HHsearch alignment for GI: 254781120 and conserved domain: TIGR00048
>TIGR00048 TIGR00048 radical SAM enzyme, Cfr family; InterPro: IPR004383 This family of conserved hypothetical proteins groups bacterial proteins of unknown function..
Probab=100.00 E-value=0 Score=998.44 Aligned_cols=347 Identities=46% Similarity=0.768 Sum_probs=332.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHCC-CCHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf 66585735899899999999869985457755899999998717999678334-78899999862022578702346531
Q gi|254781120|r 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSD-ISQEVRHLLNQHFSIIYPEIVDEKIS 81 (384)
Q Consensus 3 ~~~K~~L~~ls~~EL~~~l~~~G~p~~~~~fRa~QI~~wiy~k~v~~f~~Mtn-Lpk~lR~~L~e~~~i~~l~iv~~~~S 81 (384)
T Consensus 3 ~~~k~sl~dl~l~el~~~l~~~Gekp----FRA~Q~~~WlY~k~~~sf~~Mtnnl~K~lrekL~~~~~l~~~~~~~~~~S 78 (378)
T TIGR00048 3 KSEKPSLLDLTLQELRQWLKDLGEKP----FRAKQIYKWLYEKGKDSFDDMTNNLSKDLREKLNREFELRTLEIAHEQRS 78 (378)
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCC----HHHHHHHHHHHHHHHCHHHHHHHCCCHHHHHHHCCEEECCCEEEEEEECC
T ss_conf 88787421587589999998567997----24789999999974020676541258788885001051145146556116
Q ss_pred CCCCCCEEEECCCCCCCCC-EEEEEEECCCCCC--------------CEEEEEECCCCHHCCCCCCCCCCHHHCCCCHHH
Q ss_conf 4544303775247777898-1554430234677--------------338988406510048613224411102789899
Q gi|254781120|r 82 CDGTRKWLLRFPARCIGGP-VEIETVYIPEKSR--------------GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEE 146 (384)
Q Consensus 82 ~DGT~K~L~~l~d~~~~dg-~~IEsVlip~~~r--------------~T~CvSSQvGC~m~C~FCaTg~~G~~RNLt~~E 146 (384)
T Consensus 79 ~DGt~Kyl~~~~-----dgn~~~EtV~~~~~~~kidaetnailerek~TvCVSsQvGC~~~C~FC~T~~gGf~RNL~~~E 153 (378)
T TIGR00048 79 VDGTIKYLFKLG-----DGNQTIETVLIPEEDRKIDAETNAILEREKATVCVSSQVGCALGCTFCATAKGGFNRNLEASE 153 (378)
T ss_pred CCCHHHHHHHHC-----CCCEEEEEEECCHHCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 871388999861-----797279987141004642135677765227626871023542255103345787521451033
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-CCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 99999999997222034444343444545861-10144101454454289999996037684577877536888513874
Q gi|254781120|r 147 ILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225 (384)
Q Consensus 147 Iv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~-i~NiVfMGmGEPl~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~ 225 (384)
T Consensus 154 Ii~Qv~~~~k~~G~~-----------~~~~erP~~nvV~MGmGEPL~Nl~~vv~a~ei~n~~~g~~is~r~~T~STsGv~ 222 (378)
T TIGR00048 154 IIGQVLRVQKILGAA-----------EETGERPVSNVVFMGMGEPLLNLNEVVKALEILNDDVGLGISKRRITISTSGVV 222 (378)
T ss_pred HHHHHHHHHHHHCCC-----------CCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHH
T ss_conf 899999999983455-----------777665404788746787101179999999987422203656733788735714
Q ss_pred HHHHHHHC-CCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC---EEEEEEEEECCCCCCHHHHHH
Q ss_conf 14788601-25651799840455113444123312578999999999998625894---599999872699988899999
Q gi|254781120|r 226 PNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR---RITFEYVMLKGINDSPRDALN 301 (384)
Q Consensus 226 p~I~~la~-~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~y~~~~~~r---rit~EYvli~gvNDs~e~a~~ 301 (384)
T Consensus 223 ~ki~~Lad~~l~V~lAiSLHApn~~~R~~l~P~nk~Y~ie~ll~~vr~Y~~~~-~~n~GRV~fEY~Ll~~vND~~~HA~~ 301 (378)
T TIGR00048 223 PKIDELADKMLQVALAISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLEKT-GRNQGRVTFEYVLLDGVNDQVEHAEE 301 (378)
T ss_pred HHHHHHCCCCCCEEEEEEECCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHC-CCCCCCEEEEEEECCCCCCCHHHHHH
T ss_conf 58888513211033445532887112444065001478679999998758642-76777268874200246885889999
Q ss_pred HHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCHHHHH
Q ss_conf 999832545316675127788798868898999999999998798785415877710011200210256
Q gi|254781120|r 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 (384)
Q Consensus 302 L~~ll~~~~~~vNLIp~N~~~~~~~~~~~~~~i~~F~~~L~~~Gi~~tiR~srG~DI~aACGQL~~~~~ 370 (384)
T Consensus 302 La~lL~g~~ckvNLIP~NP~~e~~Y~R~s~~~i~~F~~~L~s~g~~v~iR~~rG~didAACGQLRa~~~ 370 (378)
T TIGR00048 302 LAELLKGVKCKVNLIPFNPFPEADYERPSNEQIDRFAKVLKSKGLTVTIRKSRGDDIDAACGQLRAKDV 370 (378)
T ss_pred HHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCHHH
T ss_conf 999856998504012137879888888808899999998620883799832325534551350000135