HHsearch alignment for GI: 254781120 and conserved domain: TIGR01290

>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB; InterPro: IPR005980 NifB is a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack most of the C-terminal region and are excluded from this model.; GO: 0009108 coenzyme biosynthetic process, 0009399 nitrogen fixation.
Probab=98.13  E-value=0.00023  Score=53.39  Aligned_cols=203  Identities=20%  Similarity=0.376  Sum_probs=147.4

Q ss_pred             CCCHHCCCCCCC-------CCCHHH-CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHH
Q ss_conf             651004861322-------441110-278989999999999997222034444343444545861101441014544542
Q gi|254781120|r  122 VGCSLTCSFCYT-------GTQKLV-RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN  193 (384)
Q Consensus       122 vGC~m~C~FCaT-------g~~G~~-RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl~N  193 (384)
T Consensus        32 pACNiQCNYCNRKyDC~NESRPGV~S~~LtP~qA~~k~~~VA~~i~------------------QLSVvGIAGPGDpLan   93 (461)
T TIGR01290        32 PACNIQCNYCNRKYDCANESRPGVVSELLTPEQALAKVKAVAAEIP------------------QLSVVGIAGPGDPLAN   93 (461)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC------------------CCEEEEECCCCCCCCC
T ss_conf             4334554556864166788887620134684899999999985067------------------5315632578862457


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCEEEEEECCCC--HHHHHHHCCCCCCEEEEEECCCCHHHHHHCC----CCCCCCHHHHH
Q ss_conf             89999996037684577877536888513874--1478860125651799840455113444123----31257899999
Q gi|254781120|r  194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVP----INRKYPLEMLI  267 (384)
Q Consensus       194 ~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~--p~I~~la~~~~~~LAiSLha~~~~~R~~lmP----i~~~~~l~~l~  267 (384)
T Consensus        94 ~~~Tf~Tl~~v~~----~~PDvklCLSTNGL~LP~~vDrlvdlgvdHVTiTiN~iDP~vG~~IYpWv~y~G~RY~Gr~Aa  169 (461)
T TIGR01290        94 IKKTFQTLELVAR----EVPDVKLCLSTNGLALPEHVDRLVDLGVDHVTITINAIDPEVGEKIYPWVAYEGKRYTGREAA  169 (461)
T ss_pred             CCCCHHHHHHHHH----HCCCEEEECCCCCCCCHHHHHHHHHCCCCCEEEEECCCCHHHHCEECCCEEECCCCCCHHHHH
T ss_conf             5000899999985----178214200126563134652464238881798831406355103065233267333548999


Q ss_pred             HHHHH-----HHHHCCCCE--EEEEEEEECCCCCCHHHHHHHHHHHCCCCCE-EEEEECCCCC--CC-----CCCCCCHH
Q ss_conf             99999-----986258945--9999987269998889999999983254531-6675127788--79-----88688989
Q gi|254781120|r  268 DACRH-----YPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWP--GC-----EYLCSDQK  332 (384)
Q Consensus       268 ~a~~~-----y~~~~~~rr--it~EYvli~gvNDs~e~a~~L~~ll~~~~~~-vNLIp~N~~~--~~-----~~~~~~~~  332 (384)
T Consensus       170 ~lL~erQl~G~~~L~-ergiL~KvNSvlIPGiND--~HL~eVsk~vk~~GAfLHNvmPLis~PeHGt~ygl~Gq~~P~~~  246 (461)
T TIGR01290       170 KLLIERQLEGLEKLT-ERGILVKVNSVLIPGIND--EHLVEVSKKVKELGAFLHNVMPLISAPEHGTVYGLNGQRAPAPS  246 (461)
T ss_pred             HHHHHHHHHHHHHHH-HCCCEEEECCEECCCCCC--HHHHHHHHHHHCCCCHHCCCCCCEECCCCCCCCCCCCCCCCCHH
T ss_conf             998999999999997-388548880064389881--78999877751046400054421014898831167878888989


Q ss_pred             HHHHHHHHHHHC-CCEEE
Q ss_conf             999999999987-98785
Q gi|254781120|r  333 DIVTFSECIKRS-GYSSP  349 (384)
Q Consensus       333 ~i~~F~~~L~~~-Gi~~t  349 (384)
T Consensus       247 el~~l~~~l~~~~Gae~~  264 (461)
T TIGR01290       247 ELKALRDRLEEGDGAETK  264 (461)
T ss_pred             HHHHHHHHHCCCCCCCCC
T ss_conf             999999970788875565