HHsearch alignment for GI: 254781120 and conserved domain: TIGR01579
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme; InterPro: IPR006467 This clade of sequences is closely related to MiaB, a modifier of isopentenylated adenosine-37 of certain eukaryotic and bacterial tRNAs (see IPR006463 from INTERPRO). Sequence alignments suggest that these sequences perform the same chemical transformation as MiaB, perhaps on a different (or differently modified) tRNA base substrate. This clade represents a subfamily that spans low GC Gram-positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium , , ..
Probab=96.55 E-value=0.049 Score=36.14 Aligned_cols=204 Identities=20% Similarity=0.299 Sum_probs=130.6
Q ss_pred CCCCCEEEEEECCCCHHCCCCC----CCCCCHHHCCCCHHHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 4677338988406510048613----22441110278989999999-999997222034444343444545861101441
Q gi|254781120|r 110 EKSRGTLCVSSQVGCSLTCSFC----YTGTQKLVRNLTAEEILLQV-LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 (384)
Q Consensus 110 ~~~r~T~CvSSQvGC~m~C~FC----aTg~~G~~RNLt~~EIv~Qv-~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVf 184 (384)
T Consensus 206 f~~~~RAFvKVQdGCn~~CsyC~IP~~RG--t~~RS~~~e~~~~~v~~Lv~~gy~Ev----------------VLTGvnl 267 (492)
T TIGR01579 206 FEERTRAFVKVQDGCNKFCSYCIIPFARG--TRSRSVPLEKILEQVKELVAKGYKEV----------------VLTGVNL 267 (492)
T ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHCCCEEE----------------EEEEECC
T ss_conf 02788625788758898844101403378--97641667899999999973775599----------------9840014
Q ss_pred ECCCCHH----HHHHHHHHHHHC-CCCCCCCCCCCCEEEEEECCC---CHHHHHH-H-C-CCCCCEEEEEECCCCHHHHH
Q ss_conf 0145445----428999999603-768457787753688851387---4147886-0-1-25651799840455113444
Q gi|254781120|r 185 MGMGEPL----CNFDNVKKSLSI-ASDSMGLSFSKRRITLSTSGF---VPNIARV-G-E-EIGVMLAISLHAVSNDLRNI 253 (384)
Q Consensus 185 MGmGEPl----~N~d~v~~ai~~-l~~~~g~~~~~r~ITvST~Gi---~p~I~~l-a-~-~~~~~LAiSLha~~~~~R~~ 253 (384)
T Consensus 268 g~Yg~d~~~~g~~L~~Ll~~i~~q~~g~~-------RiRlSS~~p~~~~~~l~~l~~s~~~l~PHlHlsLQSGsd~vL-k 339 (492)
T TIGR01579 268 GSYGDDLGENGSSLAKLLEQILKQIPGIE-------RIRLSSIDPEDIDEELLELIKSEKKLCPHLHLSLQSGSDRVL-K 339 (492)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCE-------EEEECCCCHHHHCHHHHHHHHCCCCCCCCCCEEEECCCHHHH-H
T ss_conf 44568887667608999999986468834-------676325776550489999973476416320000222773798-4
Q ss_pred HCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCC-CCCHHHHHHHHHHHCCCC-CEEEEEECCCCCC---CCCCC
Q ss_conf 123312578999999999998625894599999872699-988899999999832545-3166751277887---98868
Q gi|254781120|r 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI-NDSPRDALNLIKILKGIP-AKINLIPFNPWPG---CEYLC 328 (384)
Q Consensus 254 lmPi~~~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gv-NDs~e~a~~L~~ll~~~~-~~vNLIp~N~~~~---~~~~~ 328 (384)
T Consensus 340 rM~--R~Y~r~~~~~~v~~lr~~~--p~~~~gtD~IVGFP~E~eedFq~t~~~~~~~~~~~~HiFpyS~R~~T~A~~m~~ 415 (492)
T TIGR01579 340 RMR--RKYTRDDFLKLVQKLRSVR--PDYAFGTDVIVGFPGESEEDFQETLRIVKEIEFSGLHIFPYSARPGTPASAMDD 415 (492)
T ss_pred HCC--CCCCHHHHHHHHHHHHHCC--CCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC
T ss_conf 248--7887689999999998507--763037603740888988999999999852660213354268843281204787
Q ss_pred ---CCHHHHHHHHHHHHH
Q ss_conf ---898999999999998
Q gi|254781120|r 329 ---SDQKDIVTFSECIKR 343 (384)
Q Consensus 329 ---~~~~~i~~F~~~L~~ 343 (384)
T Consensus 416 rf~v~~~~~KeR~~~L~~ 433 (492)
T TIGR01579 416 RFKVPETIKKERVKRLKE 433 (492)
T ss_pred CCCCCCHHHHHHHHHHHH
T ss_conf 442761158899999999