HHsearch alignment for GI: 254781120 and conserved domain: TIGR02826
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein; InterPro: IPR014191 Members of this entry represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR, see IPR012837 from INTERPRO). Members of this entry are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of these proteins as RNR activating proteins is partly from pairing with the candidate RNR and further supported by the finding that upstream of these operons are examples of a conserved regulatory element that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes ..
Probab=96.50 E-value=0.0033 Score=44.79 Aligned_cols=92 Identities=24% Similarity=0.367 Sum_probs=62.5
Q ss_pred EECCCCCCCEEEEEECCCCHHC--CCCCCCCCC--HHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-
Q ss_conf 3023467733898840651004--861322441--11027898999999999999722203444434344454586110-
Q gi|254781120|r 106 VYIPEKSRGTLCVSSQVGCSLT--CSFCYTGTQ--KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS- 180 (384)
Q Consensus 106 Vlip~~~r~T~CvSSQvGC~m~--C~FCaTg~~--G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~- 180 (384)
T Consensus 8 VfqEvPde~~LA~~~~-GCp~~PKC~GCHS~~lW~~d~G~~Lt~e~~~~~l~--~y------------------~~~I~R 66 (165)
T TIGR02826 8 VFQEVPDEVSLAFNIS-GCPLGPKCKGCHSPELWHEDEGTPLTEEALAQLLD--KY------------------RSLITR 66 (165)
T ss_pred CEEECCCCEEEEEEEE-CCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHH--HH------------------CCCCCH
T ss_conf 0665087067877754-67877959888873111356798889899999998--74------------------000101
Q ss_pred -----EEEEECCCCHHH--HHHHHHHHHHCCCCC-CCCCCCCCEEEEEECCCC
Q ss_conf -----144101454454--289999996037684-577877536888513874
Q gi|254781120|r 181 -----NIVMMGMGEPLC--NFDNVKKSLSIASDS-MGLSFSKRRITLSTSGFV 225 (384)
Q Consensus 181 -----NiVfMGmGEPl~--N~d~v~~ai~~l~~~-~g~~~~~r~ITvST~Gi~ 225 (384)
T Consensus 67 YFPK~Cv~FlG-GEPLAPw~~~~l~~Ll~~~k~~~~~L~------v~LYTG~~ 112 (165)
T TIGR02826 67 YFPKVCVLFLG-GEPLAPWEPEALLSLLKLVKEEHAGLK------VCLYTGRE 112 (165)
T ss_pred HHHHHEEEECC-CCCCCCCCHHHHHHHHHHHHHHCCCCE------EEEECCCC
T ss_conf 21002020047-898873376899999999997538866------88850885