HHsearch alignment for GI: 254781120 and conserved domain: TIGR03551
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=97.17 E-value=0.0057 Score=43.07 Aligned_cols=185 Identities=17% Similarity=0.188 Sum_probs=95.6
Q ss_pred EEEECCCCCCCEEEEEECCCCHHCCCCCCCCCCH-H--HCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4430234677338988406510048613224411-1--027898999999999999722203444434344454586110
Q gi|254781120|r 104 ETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK-L--VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 (384)
Q Consensus 104 EsVlip~~~r~T~CvSSQvGC~m~C~FCaTg~~G-~--~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~ 180 (384)
T Consensus 39 ~n~~In~TN---i-------C~~~C~fCaF~r~p~~~~ay~lt~eei~~~~~~a~~~--------------------G~~ 88 (343)
T TIGR03551 39 VNRNINFTN---V-------CYGGCGFCAFRKRKGDADAYLLSLEEIAERAAEAWKA--------------------GAT 88 (343)
T ss_pred CCCCCCHHH---H-------HHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC--------------------CCC
T ss_conf 500625526---8-------7478976778668999866007999999999999976--------------------996
Q ss_pred EEEEECCCC----HHHHHHHHHHHHHCCCCC-CCCCCCCCEEE--EEECCCCH--HHHHHHC-CCCCCEEEEEECCCCHH
Q ss_conf 144101454----454289999996037684-57787753688--85138741--4788601-25651799840455113
Q gi|254781120|r 181 NIVMMGMGE----PLCNFDNVKKSLSIASDS-MGLSFSKRRIT--LSTSGFVP--NIARVGE-EIGVMLAISLHAVSNDL 250 (384)
Q Consensus 181 NiVfMGmGE----Pl~N~d~v~~ai~~l~~~-~g~~~~~r~IT--vST~Gi~p--~I~~la~-~~~~~LAiSLha~~~~~ 250 (384)
T Consensus 89 Ei~~~g-G~~Pel~~~~y~e~~r~ik~~~p~~~i~a~s~~Ei~~~a~~~g~~~~e~l~~Lk~AGl~s~pg~~aEil~~~v 167 (343)
T TIGR03551 89 EVCIQG-GIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDSMPGTAAEILDDEV 167 (343)
T ss_pred EEEEEC-CCCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHCCHHH
T ss_conf 899825-8687888889999999998748830102278999999998659999999999997587767886513214012
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 44412331257899999999999862589459999987269998889999999983254531667512778
Q gi|254781120|r 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPW 321 (384)
Q Consensus 251 R~~lmPi~~~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N~~ 321 (384)
T Consensus 168 r~~i~P--~K~~~~~wl~~~~~Ah~lGi~ttatml~G~gEt~eerv~hL~~lR~lqd~tggf~~fIp~~f~ 236 (343)
T TIGR03551 168 RKVICP--DKLSTAEWIEIIKTAHKLGIPTTATIMYGHVETPEHWVDHLLILREIQEETGGFTEFVPLPFV 236 (343)
T ss_pred HHCCCC--CCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 414696--989999999999999985997202234278899999999999999862013882699813656