HHsearch alignment for GI: 254781120 and conserved domain: TIGR03551

>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=97.17  E-value=0.0057  Score=43.07  Aligned_cols=185  Identities=17%  Similarity=0.188  Sum_probs=95.6

Q ss_pred             EEEECCCCCCCEEEEEECCCCHHCCCCCCCCCCH-H--HCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             4430234677338988406510048613224411-1--027898999999999999722203444434344454586110
Q gi|254781120|r  104 ETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK-L--VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS  180 (384)
Q Consensus       104 EsVlip~~~r~T~CvSSQvGC~m~C~FCaTg~~G-~--~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~  180 (384)
T Consensus        39 ~n~~In~TN---i-------C~~~C~fCaF~r~p~~~~ay~lt~eei~~~~~~a~~~--------------------G~~   88 (343)
T TIGR03551        39 VNRNINFTN---V-------CYGGCGFCAFRKRKGDADAYLLSLEEIAERAAEAWKA--------------------GAT   88 (343)
T ss_pred             CCCCCCHHH---H-------HHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC--------------------CCC
T ss_conf             500625526---8-------7478976778668999866007999999999999976--------------------996


Q ss_pred             EEEEECCCC----HHHHHHHHHHHHHCCCCC-CCCCCCCCEEE--EEECCCCH--HHHHHHC-CCCCCEEEEEECCCCHH
Q ss_conf             144101454----454289999996037684-57787753688--85138741--4788601-25651799840455113
Q gi|254781120|r  181 NIVMMGMGE----PLCNFDNVKKSLSIASDS-MGLSFSKRRIT--LSTSGFVP--NIARVGE-EIGVMLAISLHAVSNDL  250 (384)
Q Consensus       181 NiVfMGmGE----Pl~N~d~v~~ai~~l~~~-~g~~~~~r~IT--vST~Gi~p--~I~~la~-~~~~~LAiSLha~~~~~  250 (384)
T Consensus        89 Ei~~~g-G~~Pel~~~~y~e~~r~ik~~~p~~~i~a~s~~Ei~~~a~~~g~~~~e~l~~Lk~AGl~s~pg~~aEil~~~v  167 (343)
T TIGR03551        89 EVCIQG-GIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDSMPGTAAEILDDEV  167 (343)
T ss_pred             EEEEEC-CCCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHCCHHH
T ss_conf             899825-8687888889999999998748830102278999999998659999999999997587767886513214012


Q ss_pred             HHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf             44412331257899999999999862589459999987269998889999999983254531667512778
Q gi|254781120|r  251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPW  321 (384)
Q Consensus       251 R~~lmPi~~~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N~~  321 (384)
T Consensus       168 r~~i~P--~K~~~~~wl~~~~~Ah~lGi~ttatml~G~gEt~eerv~hL~~lR~lqd~tggf~~fIp~~f~  236 (343)
T TIGR03551       168 RKVICP--DKLSTAEWIEIIKTAHKLGIPTTATIMYGHVETPEHWVDHLLILREIQEETGGFTEFVPLPFV  236 (343)
T ss_pred             HHCCCC--CCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             414696--989999999999999985997202234278899999999999999862013882699813656