Query gi|254781120|ref|YP_003065533.1| radical SAM protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 384
No_of_seqs 137 out of 1593
Neff 5.3
Searched_HMMs 39220
Date Mon May 30 05:25:13 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781120.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11194 hypothetical protein; 100.0 0 0 1009.8 36.7 359 4-382 3-364 (372)
2 TIGR00048 TIGR00048 radical SA 100.0 0 0 998.4 28.9 347 3-370 3-370 (378)
3 COG0820 Predicted Fe-S-cluster 100.0 0 0 907.7 33.9 343 6-371 1-345 (349)
4 PRK11145 pflA pyruvate formate 99.7 4.6E-14 1.2E-18 125.2 21.1 215 103-349 10-245 (246)
5 PRK10076 pyruvate formate lyas 99.5 1.3E-11 3.3E-16 107.0 18.1 191 130-351 6-212 (213)
6 TIGR02493 PFLA pyruvate format 99.4 6.3E-11 1.6E-15 102.0 16.0 213 102-344 4-243 (243)
7 COG0731 Fe-S oxidoreductases [ 99.3 7.3E-10 1.9E-14 94.1 18.5 199 123-348 33-248 (296)
8 PRK00164 moaA molybdenum cofac 99.1 9.9E-09 2.5E-13 85.7 15.5 197 115-343 18-223 (334)
9 COG1180 PflA Pyruvate-formate 99.1 6.6E-08 1.7E-12 79.6 18.1 213 103-346 24-242 (260)
10 PRK13361 molybdenum cofactor b 99.1 3E-08 7.6E-13 82.1 16.3 195 115-343 15-217 (329)
11 cd01335 Radical_SAM Radical SA 99.0 5.5E-08 1.4E-12 80.2 16.0 178 119-327 2-187 (204)
12 TIGR02668 moaA_archaeal probab 99.0 2.9E-08 7.5E-13 82.2 13.8 199 118-352 14-233 (324)
13 COG2896 MoaA Molybdenum cofact 98.9 1.8E-07 4.6E-12 76.4 15.5 204 114-352 11-223 (322)
14 smart00729 Elp3 Elongator prot 98.9 2.4E-07 6E-12 75.5 14.7 188 118-327 5-198 (216)
15 pfam04055 Radical_SAM Radical 98.9 1.5E-07 3.8E-12 77.0 13.4 158 119-306 2-165 (165)
16 PRK05301 pyrroloquinoline quin 98.8 4.8E-07 1.2E-11 73.2 14.5 185 122-341 25-219 (375)
17 PRK13762 tRNA-modifying enzyme 98.8 9.9E-07 2.5E-11 70.9 15.4 260 52-344 3-289 (321)
18 TIGR03470 HpnH hopanoid biosyn 98.7 9.7E-07 2.5E-11 71.0 14.6 184 122-343 36-228 (318)
19 COG2100 Predicted Fe-S oxidore 98.7 2.8E-07 7.1E-12 75.0 11.3 204 112-343 105-323 (414)
20 TIGR02666 moaA molybdenum cofa 98.7 1.4E-06 3.6E-11 69.8 13.1 207 118-356 14-236 (346)
21 COG1509 KamA Lysine 2,3-aminom 98.6 8.7E-06 2.2E-10 63.9 16.8 282 36-354 13-329 (369)
22 TIGR02494 PFLE_PFLC glycyl-rad 98.6 2.1E-06 5.3E-11 68.5 12.9 186 131-345 98-305 (305)
23 PRK07094 biotin synthase; Prov 98.4 9E-05 2.3E-09 56.4 16.4 207 122-364 47-266 (323)
24 PRK13758 anaerobic sulfatase-m 98.3 5.4E-05 1.4E-09 58.0 14.0 177 115-318 6-194 (370)
25 COG1032 Fe-S oxidoreductase [E 98.3 3.9E-05 9.9E-10 59.1 13.2 195 114-330 198-405 (490)
26 COG1625 Fe-S oxidoreductase, r 98.3 3E-05 7.7E-10 59.9 11.6 206 111-349 31-254 (414)
27 TIGR03471 HpnJ hopanoid biosyn 98.2 0.00016 4.2E-09 54.5 14.8 191 116-348 198-394 (472)
28 PRK06256 biotin synthase; Vali 98.2 0.00076 1.9E-08 49.5 17.8 209 118-364 62-286 (325)
29 COG0535 Predicted Fe-S oxidore 98.1 0.00035 9E-09 52.0 15.2 177 113-322 18-199 (347)
30 TIGR01290 nifB nitrogenase cof 98.1 0.00023 5.8E-09 53.4 14.0 203 122-349 32-264 (461)
31 COG0641 AslB Arylsulfatase reg 98.1 0.00019 4.9E-09 53.9 12.9 168 124-322 18-196 (378)
32 PRK06267 hypothetical protein; 98.1 0.00043 1.1E-08 51.4 14.1 191 115-342 30-231 (324)
33 TIGR03365 Bsubt_queE 7-cyano-7 97.8 0.00085 2.2E-08 49.2 12.5 162 103-322 22-189 (238)
34 PRK13745 anaerobic sulfatase-m 97.7 0.0011 2.9E-08 48.2 11.9 183 109-319 8-204 (412)
35 TIGR03279 cyano_FeS_chp putati 97.6 0.0048 1.2E-07 43.6 13.2 86 216-307 120-205 (433)
36 COG0621 MiaB 2-methylthioadeni 97.4 0.017 4.2E-07 39.6 14.3 184 110-325 140-341 (437)
37 COG1533 SplB DNA repair photol 97.4 0.0079 2E-07 42.0 12.0 175 117-320 32-225 (297)
38 COG0502 BioB Biotin synthase a 97.3 0.027 6.9E-07 38.0 14.4 209 116-360 54-276 (335)
39 PRK08508 biotin synthase; Prov 97.2 0.03 7.6E-07 37.7 16.4 206 122-361 15-233 (279)
40 TIGR03551 F420_cofH 7,8-dideme 97.2 0.0057 1.4E-07 43.1 9.5 185 104-321 39-236 (343)
41 TIGR03278 methan_mark_10 putat 97.0 0.037 9.5E-07 37.0 12.2 185 126-344 37-239 (404)
42 PRK07360 FO synthase subunit 2 97.0 0.0077 2E-07 42.1 8.6 180 103-319 59-260 (375)
43 PRK08444 hypothetical protein; 96.7 0.0078 2E-07 42.0 7.1 169 124-319 59-244 (353)
44 COG0602 NrdG Organic radical a 96.7 0.0045 1.2E-07 43.8 5.8 83 112-226 21-111 (212)
45 COG5014 Predicted Fe-S oxidore 96.7 0.063 1.6E-06 35.3 11.5 158 119-315 46-221 (228)
46 TIGR02495 NrdG2 anaerobic ribo 96.7 0.0026 6.6E-08 45.6 4.3 176 109-310 12-207 (220)
47 TIGR01579 MiaB-like-C MiaB-lik 96.6 0.049 1.2E-06 36.1 10.2 204 110-343 206-433 (492)
48 TIGR02826 RNR_activ_nrdG3 anae 96.5 0.0033 8.4E-08 44.8 3.9 92 106-225 8-112 (165)
49 PRK06245 cofG FO synthase subu 96.2 0.091 2.3E-06 34.1 10.1 221 103-359 11-255 (336)
50 TIGR03550 F420_cofG 7,8-dideme 96.0 0.058 1.5E-06 35.6 8.0 206 124-356 14-249 (322)
51 PRK08445 hypothetical protein; 95.8 0.056 1.4E-06 35.7 7.4 171 124-319 52-237 (348)
52 TIGR02109 PQQ_syn_pqqE coenzym 95.4 0.064 1.6E-06 35.2 6.3 182 124-341 17-209 (363)
53 TIGR00238 TIGR00238 lysine 2,3 95.0 0.23 5.8E-06 31.2 8.3 203 103-341 122-337 (357)
54 KOG2876 consensus 94.8 0.16 4E-06 32.4 7.0 218 116-366 13-243 (323)
55 PRK05927 hypothetical protein; 94.2 0.56 1.4E-05 28.3 8.7 195 124-343 55-273 (350)
56 PRK11121 nrdG anaerobic ribonu 93.7 0.079 2E-06 34.6 3.6 87 113-225 18-108 (154)
57 COG2108 Uncharacterized conser 93.0 0.96 2.5E-05 26.5 9.8 204 123-375 37-271 (353)
58 PRK05926 hypothetical protein; 92.3 1.2 3.1E-05 25.8 9.1 169 124-320 79-264 (371)
59 COG1060 ThiH Thiamine biosynth 92.0 1.3 3.3E-05 25.6 12.2 213 103-353 58-295 (370)
60 PRK09234 fbiC FO synthase; Rev 91.3 0.74 1.9E-05 27.4 6.0 182 112-318 524-724 (846)
61 COG2516 Biotin synthase-relate 90.6 1.7 4.4E-05 24.7 9.0 118 239-359 145-272 (339)
62 PRK05409 hypothetical protein; 89.2 2.2 5.7E-05 23.9 7.6 121 182-313 37-172 (283)
63 PRK01254 hypothetical protein; 88.7 2.4 6E-05 23.7 13.8 189 114-312 372-588 (742)
64 PRK00955 hypothetical protein; 87.8 2.7 6.9E-05 23.2 13.5 180 116-313 293-509 (599)
65 COG1244 Predicted Fe-S oxidore 86.9 3 7.7E-05 22.9 13.8 196 124-346 61-282 (358)
66 PRK09240 thiH thiamine biosynt 86.5 3.1 8E-05 22.7 14.5 275 10-354 8-302 (371)
67 PRK11425 N-acetylgalactosamine 84.3 3.9 0.0001 22.0 7.2 111 237-356 30-148 (157)
68 TIGR02491 NrdG anaerobic ribon 83.2 1.6 4.1E-05 24.9 3.7 83 113-221 17-104 (158)
69 cd01965 Nitrogenase_MoFe_beta_ 83.1 2.6 6.7E-05 23.3 4.7 87 264-358 284-384 (428)
70 TIGR02190 GlrX-dom Glutaredoxi 81.6 0.38 9.7E-06 29.5 -0.0 23 114-140 8-30 (79)
71 TIGR00423 TIGR00423 conserved 81.0 3.7 9.5E-05 22.2 4.9 149 124-305 15-195 (331)
72 PRK09613 thiH thiamine biosynt 80.6 5.3 0.00014 21.1 15.6 210 123-354 93-322 (471)
73 COG1313 PflX Uncharacterized F 79.8 5.6 0.00014 20.9 13.1 242 63-348 72-331 (335)
74 TIGR01515 branching_enzym 1,4- 76.9 6.8 0.00017 20.3 5.2 58 296-353 151-222 (608)
75 PRK09756 N-acetylgalactosamine 76.8 6.8 0.00017 20.3 7.2 108 236-355 31-150 (158)
76 COG3444 Phosphotransferase sys 76.0 7.1 0.00018 20.1 6.8 111 237-356 29-148 (159)
77 PRK11895 ilvH acetolactate syn 75.6 4.7 0.00012 21.5 4.0 139 193-352 11-149 (161)
78 cd00001 PTS_IIB_man PTS_IIB, P 74.4 7.8 0.0002 19.8 7.0 106 239-355 29-145 (151)
79 pfam05114 DUF692 Protein of un 73.7 8 0.00021 19.7 8.0 127 183-321 35-180 (275)
80 TIGR01125 TIGR01125 MiaB-like 73.3 3.2 8.1E-05 22.7 2.7 221 104-339 151-392 (475)
81 cd06660 Aldo_ket_red Aldo-keto 73.1 8.3 0.00021 19.6 10.0 101 240-366 113-213 (285)
82 COG1242 Predicted Fe-S oxidore 71.0 9.2 0.00024 19.3 7.4 115 230-351 137-263 (312)
83 TIGR01578 MiaB-like-B MiaB-lik 64.1 12 0.00032 18.3 11.6 179 119-324 149-342 (487)
84 TIGR00089 TIGR00089 RNA modifi 53.2 19 0.00047 17.0 16.1 250 38-325 91-354 (455)
85 pfam09494 Slx4 Slx4 endonuclea 51.8 19 0.00049 16.9 4.2 12 33-44 174-185 (627)
86 pfam03830 PTSIIB_sorb PTS syst 51.5 20 0.0005 16.9 7.2 107 238-355 29-146 (151)
87 PRK08208 coproporphyrinogen II 47.8 22 0.00057 16.5 17.2 202 124-348 55-273 (436)
88 TIGR02026 BchE magnesium-proto 47.1 6.6 0.00017 20.3 0.5 181 113-325 196-387 (506)
89 KOG3040 consensus 47.0 23 0.00058 16.4 3.3 175 141-341 66-253 (262)
90 COG1031 Uncharacterized Fe-S o 46.8 23 0.00058 16.4 3.7 146 114-277 182-349 (560)
91 cd06522 GH25_AtlA-like AtlA is 46.2 23 0.0006 16.3 3.2 68 280-347 57-124 (192)
92 PRK05692 hydroxymethylglutaryl 46.2 23 0.0006 16.3 7.0 88 141-248 112-209 (287)
93 TIGR01212 TIGR01212 radical SA 45.0 8.9 0.00023 19.4 0.9 195 125-349 37-258 (307)
94 TIGR02090 LEU1_arch isopropylm 44.9 17 0.00044 17.2 2.3 117 140-278 105-248 (371)
95 PRK11347 antitoxin ChpS; Provi 44.4 15 0.00038 17.8 1.9 35 235-271 26-60 (83)
96 KOG1552 consensus 44.4 25 0.00063 16.1 4.7 110 188-309 104-221 (258)
97 PHA01745 hypothetical protein 44.2 5 0.00013 21.3 -0.5 150 194-354 28-237 (306)
98 PRK13057 putative lipid kinase 43.9 25 0.00064 16.1 4.2 52 36-90 16-67 (287)
99 PRK08599 coproporphyrinogen II 43.9 25 0.00064 16.0 16.3 200 124-348 11-232 (377)
100 COG2984 ABC-type uncharacteriz 41.6 27 0.00069 15.8 5.6 16 333-348 176-191 (322)
101 PRK08674 bifunctional phosphog 41.0 17 0.00045 17.2 1.8 28 331-358 260-287 (328)
102 PRK09912 aldo-keto reductase; 40.6 28 0.00072 15.7 8.8 85 261-360 144-231 (346)
103 COG3220 Uncharacterized protei 40.4 28 0.00072 15.7 4.8 124 182-320 35-180 (282)
104 PRK09058 coproporphyrinogen II 40.3 28 0.00073 15.7 17.3 203 124-348 66-291 (447)
105 pfam02353 CMAS Cyclopropane-fa 38.8 30 0.00076 15.5 4.3 138 148-312 95-236 (273)
106 pfam02446 Glyco_hydro_77 4-alp 38.4 30 0.00077 15.5 3.5 23 113-136 228-250 (494)
107 PRK08363 alanine aminotransfer 37.9 31 0.00079 15.4 7.4 20 336-355 343-363 (398)
108 TIGR01017 rpsD_bact ribosomal 37.3 22 0.00055 16.5 1.9 37 176-219 99-136 (217)
109 pfam00248 Aldo_ket_red Aldo/ke 37.2 32 0.0008 15.3 11.8 89 241-356 103-191 (273)
110 pfam10369 ALS_ss_C Small subun 36.9 32 0.00081 15.3 5.3 65 285-352 3-67 (75)
111 TIGR01158 SUI1_rel translation 35.6 33 0.00085 15.2 2.6 53 285-348 49-106 (111)
112 TIGR02846 spore_sigmaK RNA pol 35.4 10 0.00027 18.9 -0.0 73 217-291 79-193 (228)
113 PRK11161 fumarate/nitrate redu 34.7 23 0.0006 16.3 1.7 193 122-349 4-216 (235)
114 pfam10443 RNA12 RNA12 protein. 34.6 35 0.00088 15.0 2.6 107 248-364 256-381 (428)
115 PRK11914 diacylglycerol kinase 34.1 35 0.0009 15.0 4.7 51 38-90 29-79 (304)
116 pfam00682 HMGL-like HMGL-like. 34.0 35 0.0009 15.0 7.0 85 141-248 100-191 (237)
117 cd01830 XynE_like SGNH_hydrola 33.5 36 0.00091 14.9 6.3 38 237-274 75-112 (204)
118 pfam11995 DUF3490 Domain of un 33.0 36 0.00093 14.9 4.2 14 279-292 114-127 (165)
119 cd01320 ADA Adenosine deaminas 32.8 37 0.00094 14.8 9.9 165 139-352 101-272 (325)
120 pfam04008 Adenosine_kin Adenos 31.4 39 0.00098 14.7 3.3 71 112-204 24-96 (155)
121 TIGR01344 malate_syn_A malate 31.3 25 0.00063 16.1 1.3 63 259-343 238-302 (522)
122 PRK13337 putative lipid kinase 31.2 39 0.00099 14.7 4.5 11 80-90 65-75 (305)
123 KOG2672 consensus 31.2 16 0.0004 17.6 0.3 116 225-349 204-327 (360)
124 pfam10906 DUF2697 Protein of u 30.9 22 0.00057 16.5 1.0 43 300-342 12-61 (68)
125 PRK07379 coproporphyrinogen II 30.6 40 0.001 14.6 17.9 205 124-348 20-247 (399)
126 pfam08806 Sep15_SelM Sep15/Sel 30.4 34 0.00087 15.1 1.9 54 217-272 5-73 (77)
127 pfam08769 Spo0A_C Sporulation 30.1 40 0.001 14.5 2.3 60 16-78 1-60 (106)
128 KOG3107 consensus 29.7 41 0.001 14.5 4.3 70 216-302 373-443 (468)
129 CHL00100 ilvH acetohydroxyacid 29.5 32 0.00082 15.3 1.7 139 193-352 11-149 (172)
130 TIGR01181 dTDP_gluc_dehyt dTDP 29.4 38 0.00098 14.7 2.0 114 224-352 61-187 (340)
131 TIGR02157 PA_CoA_Oxy2 phenylac 28.9 29 0.00074 15.6 1.3 46 234-295 13-58 (90)
132 KOG0498 consensus 28.5 37 0.00094 14.8 1.8 61 13-73 360-421 (727)
133 cd00622 PLPDE_III_ODC Type III 28.2 43 0.0011 14.3 14.1 171 178-369 68-254 (362)
134 PRK09198 putative nicotinate p 27.9 22 0.00055 16.5 0.6 19 331-349 339-357 (462)
135 pfam01274 Malate_synthase Mala 27.5 40 0.001 14.5 1.9 24 204-227 159-182 (524)
136 TIGR01485 SPP_plant-cyano sucr 27.3 45 0.0011 14.2 2.5 30 330-359 134-163 (257)
137 KOG2420 consensus 27.3 40 0.001 14.6 1.8 75 36-123 111-191 (382)
138 KOG3127 consensus 26.6 20 0.00051 16.8 0.2 27 115-141 81-110 (230)
139 pfam07587 PSD1 Protein of unkn 26.4 47 0.0012 14.1 3.4 114 14-160 3-128 (258)
140 cd00480 malate_synt Malate syn 26.4 42 0.0011 14.4 1.8 18 203-220 140-157 (511)
141 PRK09358 adenosine deaminase; 26.3 47 0.0012 14.1 9.2 166 139-352 105-276 (333)
142 TIGR01983 UbiG ubiquinone bios 26.1 47 0.0012 14.0 3.8 62 282-348 162-249 (275)
143 PRK12928 lipoyl synthase; Prov 25.8 25 0.00064 16.1 0.6 189 124-349 70-275 (290)
144 TIGR02182 GRXB Glutaredoxin, G 25.5 22 0.00055 16.6 0.2 108 224-352 83-192 (212)
145 PRK07778 consensus 25.5 48 0.0012 14.0 7.1 10 59-68 71-80 (386)
146 PRK09265 aminotransferase AlaT 25.3 49 0.0012 13.9 9.2 19 336-354 350-369 (404)
147 pfam08654 DASH_Dad2 DASH compl 24.9 38 0.00096 14.8 1.3 18 189-206 49-66 (98)
148 TIGR00050 rRNA_methyl_1 RNA me 24.4 50 0.0013 13.8 2.3 56 216-271 77-157 (253)
149 TIGR00379 cobB cobyrinic acid 24.3 21 0.00053 16.7 -0.1 178 176-366 143-340 (464)
150 TIGR01706 NAPA periplasmic nit 24.3 25 0.00065 16.0 0.4 48 65-112 219-267 (930)
151 KOG0335 consensus 24.2 51 0.0013 13.8 2.6 128 224-359 272-404 (482)
152 cd00727 malate_synt_A Malate s 24.2 51 0.0013 13.8 2.5 19 203-221 140-158 (511)
153 pfam00070 Pyr_redox Pyridine n 24.1 51 0.0013 13.8 5.5 48 299-349 11-58 (82)
154 TIGR01990 bPGM beta-phosphoglu 24.0 11 0.00027 18.8 -1.6 29 217-247 88-122 (190)
155 COG1082 IolE Sugar phosphate i 23.9 51 0.0013 13.8 9.1 111 186-307 149-269 (274)
156 PRK12384 sorbitol-6-phosphate 23.8 31 0.00078 15.4 0.7 97 192-291 152-254 (259)
157 TIGR02128 G6PI_arch bifunction 23.6 34 0.00085 15.1 0.9 36 193-236 84-119 (338)
158 COG1856 Uncharacterized homolo 23.6 52 0.0013 13.7 15.5 207 116-368 12-232 (275)
159 pfam07498 Rho_N Rho terminatio 23.4 53 0.0013 13.7 3.6 39 8-47 1-39 (43)
160 TIGR03642 cas_csx13 CRISPR-ass 23.4 53 0.0013 13.7 2.4 30 339-368 82-113 (124)
161 COG1327 Predicted transcriptio 23.2 30 0.00076 15.5 0.6 13 126-138 1-13 (156)
162 pfam04690 YABBY YABBY protein. 23.0 26 0.00068 15.9 0.3 17 119-135 6-22 (170)
163 pfam01171 ATP_bind_3 PP-loop f 22.9 54 0.0014 13.6 9.0 18 328-348 146-163 (182)
164 cd01582 Homoaconitase Homoacon 22.9 54 0.0014 13.6 3.6 67 281-348 234-305 (363)
165 TIGR01083 nth endonuclease III 22.8 39 0.001 14.6 1.1 54 8-84 61-114 (192)
166 PRK07865 N-succinyldiaminopime 22.7 54 0.0014 13.6 4.9 13 336-348 318-330 (364)
167 cd01583 IPMI 3-isopropylmalate 22.3 55 0.0014 13.5 3.4 63 280-348 259-324 (382)
168 TIGR00433 bioB biotin synthase 22.3 55 0.0014 13.5 4.1 150 194-358 137-304 (350)
169 TIGR00559 pdxJ pyridoxal phosp 22.0 56 0.0014 13.5 6.1 57 296-352 73-133 (265)
170 PTZ00242 protein tyrosine phos 22.0 56 0.0014 13.5 2.8 19 326-344 76-94 (172)
171 KOG0054 consensus 22.0 30 0.00077 15.5 0.4 93 103-221 537-646 (1381)
172 PRK00129 upp uracil phosphorib 21.7 48 0.0012 14.0 1.4 113 127-274 90-205 (208)
173 cd01351 Aconitase Aconitase ca 21.7 57 0.0014 13.5 3.5 37 279-317 265-304 (389)
174 cd04708 BAH_plantDCM_II BAH, o 21.6 33 0.00085 15.2 0.5 17 349-365 186-202 (202)
175 PRK12373 NADH dehydrogenase su 21.3 56 0.0014 13.5 1.6 36 112-152 128-166 (403)
176 PRK05481 lipoyl synthase; Prov 21.2 58 0.0015 13.4 3.4 188 124-348 62-266 (289)
177 COG3460 Uncharacterized enzyme 21.2 48 0.0012 14.0 1.3 18 233-250 21-38 (117)
178 PRK09569 type I citrate syntha 21.2 27 0.00068 15.9 -0.0 73 179-257 207-284 (437)
179 PRK09622 porA pyruvate flavodo 21.1 58 0.0015 13.4 8.7 90 265-368 241-340 (407)
180 pfam07427 consensus 21.0 58 0.0015 13.4 2.4 37 86-122 37-73 (126)
181 TIGR02010 IscR iron-sulfur clu 20.9 58 0.0015 13.3 2.2 36 324-359 32-67 (140)
182 TIGR01828 pyru_phos_dikin pyru 20.8 59 0.0015 13.3 1.7 58 195-255 553-613 (920)
183 TIGR00087 surE 5'/3'-nucleotid 20.7 59 0.0015 13.3 1.7 80 183-265 105-198 (326)
184 pfam05988 DUF899 Bacterial pro 20.7 25 0.00063 16.1 -0.3 23 121-144 82-104 (211)
185 pfam04848 Pox_A22 Poxvirus A22 20.7 59 0.0015 13.3 2.3 77 286-363 54-134 (143)
186 pfam00062 Lys C-type lysozyme/ 20.4 60 0.0015 13.3 1.9 28 12-43 3-30 (125)
187 TIGR03201 dearomat_had 6-hydro 20.3 53 0.0014 13.6 1.4 26 116-142 80-105 (349)
188 PRK06620 hypothetical protein; 20.2 53 0.0014 13.6 1.3 49 235-284 136-206 (214)
No 1
>PRK11194 hypothetical protein; Provisional
Probab=100.00 E-value=0 Score=1009.76 Aligned_cols=359 Identities=45% Similarity=0.719 Sum_probs=337.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf 65857358998999999998699854577558999999987179996783347889999986202257870234653145
Q gi|254781120|r 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCD 83 (384)
Q Consensus 4 ~~K~~L~~ls~~EL~~~l~~~G~p~~~~~fRa~QI~~wiy~k~v~~f~~MtnLpk~lR~~L~e~~~i~~l~iv~~~~S~D 83 (384)
-+|+||++|+++||++|+.++|+| +|||+|||+|+|++++.+|++|||||+++|++|.++|.+..+++++.+.|+|
T Consensus 3 ~~k~~l~~l~~~eL~~~~~~~g~~----~fRa~Qi~~wiy~k~~~~f~~mtnlpk~lR~~L~e~~~i~~~~i~~~~~S~D 78 (372)
T PRK11194 3 DKKINLLDLNRQQMREFFKELGEK----PFRADQVMKWIYHFGCDDFDEMTNINKVLREKLKEVAEIRAPEVSEEQRSSD 78 (372)
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCC----HHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCEEEEEECCC
T ss_conf 878661018999999999976997----2899999999997199998991578999999997326027860578886379
Q ss_pred CCCCEEEECCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 44303775247777898155443023467733898840651004861322441110278989999999999997222034
Q gi|254781120|r 84 GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163 (384)
Q Consensus 84 GT~K~L~~l~d~~~~dg~~IEsVlip~~~r~T~CvSSQvGC~m~C~FCaTg~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~ 163 (384)
||+||||+|+ |+ .||||+||+++|.|+||||||||+|||+|||||++||.|||+++||++||++++++++...
T Consensus 79 GT~K~L~~l~-----D~-~IEtVlip~~~r~T~CvSSQVGC~m~C~FCaTG~~Gl~RNLt~~EIv~Qv~~~~~~l~~~~- 151 (372)
T PRK11194 79 GTIKWAIAVG-----DQ-EVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAK- 151 (372)
T ss_pred CEEEEEEECC-----CC-CEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHCC-
T ss_conf 8179999828-----87-2789998749976899864376368998445886443048788999999999999853201-
Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCCCCCEEEEE
Q ss_conf 44434344454586110144101454454289999996037684577877536888513874147886012565179984
Q gi|254781120|r 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 (384)
Q Consensus 164 ~~~~~~~~~~~~~~~i~NiVfMGmGEPl~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~I~~la~~~~~~LAiSL 243 (384)
....++|+|||||||||||+|||||++|+++|+|++|+++|+|||||||||++|+|++|+++++++|||||
T Consensus 152 ---------~~~~~~i~NiVfMGMGEPL~NydnV~~ai~il~~~~g~~~s~R~ITvST~Givp~I~~l~e~~~v~LAiSL 222 (372)
T PRK11194 152 ---------VTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISL 222 (372)
T ss_pred ---------CCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEE
T ss_conf ---------23666532167843784255399999999986485466777785899777872699999863156569871
Q ss_pred ECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 04551134441233125789999999999986258--9459999987269998889999999983254531667512778
Q gi|254781120|r 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPW 321 (384)
Q Consensus 244 ha~~~~~R~~lmPi~~~~~l~~l~~a~~~y~~~~~--~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N~~ 321 (384)
|||+|++|++|||+|++|||++|++|+++|+.+++ +|||||||+||+|||||++||++|++|+++++||||||||||+
T Consensus 223 HA~~de~R~~lmPin~~ypl~~L~~a~~~y~~~t~~~~~rvt~EYvLi~gvNDs~e~A~~L~~llk~~~~~VNLIp~Np~ 302 (372)
T PRK11194 223 HAPNDELRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTVEYVMLDHVNDSTEHAHQLAELLKDTPCKINLIPWNPF 302 (372)
T ss_pred CCCCHHHHHHHHCHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCCCC
T ss_conf 58986889877110315898999999999999706788528999998368789999999999997599860774568998
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCHHHHHHH-HHHHHHHHHH
Q ss_conf 879886889899999999999879878541587771001120021025655-4658988763
Q gi|254781120|r 322 PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRI-PKVPRQEMQI 382 (384)
Q Consensus 322 ~~~~~~~~~~~~i~~F~~~L~~~Gi~~tiR~srG~DI~aACGQL~~~~~r~-~~~~~~~~~~ 382 (384)
++++|++|+.+++++|+++|.++|+.||||+|+|+||+|||||||.+.... ++..+++||.
T Consensus 303 ~~~~~~~p~~~~i~~F~~~L~~~gi~vtvR~s~G~DI~AACGQLa~~~~~~~~~~~~~~~~~ 364 (372)
T PRK11194 303 PGAPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAACGQLAGDVIDRTKRTLKKRMQG 364 (372)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHCCHHHHHCCCHHHHHHHHHC
T ss_conf 99888799999999999999978991797589985333540426254526005889988652
No 2
>TIGR00048 TIGR00048 radical SAM enzyme, Cfr family; InterPro: IPR004383 This family of conserved hypothetical proteins groups bacterial proteins of unknown function..
Probab=100.00 E-value=0 Score=998.44 Aligned_cols=347 Identities=46% Similarity=0.768 Sum_probs=332.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHCC-CCHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf 66585735899899999999869985457755899999998717999678334-78899999862022578702346531
Q gi|254781120|r 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSD-ISQEVRHLLNQHFSIIYPEIVDEKIS 81 (384)
Q Consensus 3 ~~~K~~L~~ls~~EL~~~l~~~G~p~~~~~fRa~QI~~wiy~k~v~~f~~Mtn-Lpk~lR~~L~e~~~i~~l~iv~~~~S 81 (384)
.-.|.||+|++++||++|+.+.|+|+ |||+||+.|+|.++.+||++||| |||.+|++|..+|.|..+++...+.|
T Consensus 3 ~~~k~sl~dl~l~el~~~l~~~Gekp----FRA~Q~~~WlY~k~~~sf~~Mtnnl~K~lrekL~~~~~l~~~~~~~~~~S 78 (378)
T TIGR00048 3 KSEKPSLLDLTLQELRQWLKDLGEKP----FRAKQIYKWLYEKGKDSFDDMTNNLSKDLREKLNREFELRTLEIAHEQRS 78 (378)
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCC----HHHHHHHHHHHHHHHCHHHHHHHCCCHHHHHHHCCEEECCCEEEEEEECC
T ss_conf 88787421587589999998567997----24789999999974020676541258788885001051145146556116
Q ss_pred CCCCCCEEEECCCCCCCCC-EEEEEEECCCCCC--------------CEEEEEECCCCHHCCCCCCCCCCHHHCCCCHHH
Q ss_conf 4544303775247777898-1554430234677--------------338988406510048613224411102789899
Q gi|254781120|r 82 CDGTRKWLLRFPARCIGGP-VEIETVYIPEKSR--------------GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEE 146 (384)
Q Consensus 82 ~DGT~K~L~~l~d~~~~dg-~~IEsVlip~~~r--------------~T~CvSSQvGC~m~C~FCaTg~~G~~RNLt~~E 146 (384)
.|||.||||++. || ..||||+||.++| +|+||||||||+|+|.||+|++.||.|||.++|
T Consensus 79 ~DGt~Kyl~~~~-----dgn~~~EtV~~~~~~~kidaetnailerek~TvCVSsQvGC~~~C~FC~T~~gGf~RNL~~~E 153 (378)
T TIGR00048 79 VDGTIKYLFKLG-----DGNQTIETVLIPEEDRKIDAETNAILEREKATVCVSSQVGCALGCTFCATAKGGFNRNLEASE 153 (378)
T ss_pred CCCHHHHHHHHC-----CCCEEEEEEECCHHCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 871388999861-----797279987141004642135677765227626871023542255103345787521451033
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-CCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 99999999997222034444343444545861-10144101454454289999996037684577877536888513874
Q gi|254781120|r 147 ILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225 (384)
Q Consensus 147 Iv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~-i~NiVfMGmGEPl~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~ 225 (384)
||+||+.+++.++.. ..+++| |+|||||||||||+|+++|++|+++|++..||+||+||||||||||+
T Consensus 154 Ii~Qv~~~~k~~G~~-----------~~~~erP~~nvV~MGmGEPL~Nl~~vv~a~ei~n~~~g~~is~r~~T~STsGv~ 222 (378)
T TIGR00048 154 IIGQVLRVQKILGAA-----------EETGERPVSNVVFMGMGEPLLNLNEVVKALEILNDDVGLGISKRRITISTSGVV 222 (378)
T ss_pred HHHHHHHHHHHHCCC-----------CCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHH
T ss_conf 899999999983455-----------777665404788746787101179999999987422203656733788735714
Q ss_pred HHHHHHHC-CCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC---EEEEEEEEECCCCCCHHHHHH
Q ss_conf 14788601-25651799840455113444123312578999999999998625894---599999872699988899999
Q gi|254781120|r 226 PNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR---RITFEYVMLKGINDSPRDALN 301 (384)
Q Consensus 226 p~I~~la~-~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~y~~~~~~r---rit~EYvli~gvNDs~e~a~~ 301 (384)
|+|+.||+ .++|+||||||||||++|++|||+||+|+|+.|++++++|+..+ +| ||||||+||+||||+++||++
T Consensus 223 ~ki~~Lad~~l~V~lAiSLHApn~~~R~~l~P~nk~Y~ie~ll~~vr~Y~~~~-~~n~GRV~fEY~Ll~~vND~~~HA~~ 301 (378)
T TIGR00048 223 PKIDELADKMLQVALAISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLEKT-GRNQGRVTFEYVLLDGVNDQVEHAEE 301 (378)
T ss_pred HHHHHHCCCCCCEEEEEEECCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHC-CCCCCCEEEEEEECCCCCCCHHHHHH
T ss_conf 58888513211033445532887112444065001478679999998758642-76777268874200246885889999
Q ss_pred HHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCHHHHH
Q ss_conf 999832545316675127788798868898999999999998798785415877710011200210256
Q gi|254781120|r 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 (384)
Q Consensus 302 L~~ll~~~~~~vNLIp~N~~~~~~~~~~~~~~i~~F~~~L~~~Gi~~tiR~srG~DI~aACGQL~~~~~ 370 (384)
|+++|+|.+||||||||||+|+.+|.+|+.++|.+|.+.|.++|+.||||+|||.||+|||||||++..
T Consensus 302 La~lL~g~~ckvNLIP~NP~~e~~Y~R~s~~~i~~F~~~L~s~g~~v~iR~~rG~didAACGQLRa~~~ 370 (378)
T TIGR00048 302 LAELLKGVKCKVNLIPFNPFPEADYERPSNEQIDRFAKVLKSKGLTVTIRKSRGDDIDAACGQLRAKDV 370 (378)
T ss_pred HHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCHHH
T ss_conf 999856998504012137879888888808899999998620883799832325534551350000135
No 3
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=100.00 E-value=0 Score=907.74 Aligned_cols=343 Identities=52% Similarity=0.872 Sum_probs=330.4
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCC
Q ss_conf 85735899899999999869985457755899999998717999678334788999998620225787023465314544
Q gi|254781120|r 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGT 85 (384)
Q Consensus 6 K~~L~~ls~~EL~~~l~~~G~p~~~~~fRa~QI~~wiy~k~v~~f~~MtnLpk~lR~~L~e~~~i~~l~iv~~~~S~DGT 85 (384)
|.||++|+.+++++|+.++|+| +|||+|||+|+|.+++.+|++||||||.+|++|+++|.+..++++..+.|.|||
T Consensus 1 ~~~l~~l~~~~~~~~~~~~g~~----~fra~Qi~~W~y~~~~~~f~~Mtnl~k~~r~~L~~~~~~~~~~~~~~~~s~dGT 76 (349)
T COG0820 1 KRNLLDLTRAELAEWLAELGLK----KFRAKQLFKWIYQKGVDDFDEMTDLSKGLRAKLKEAFFINLLKVVEVQESSDGT 76 (349)
T ss_pred CCCHHHCCHHHHHHHHHHCCCC----CHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCC
T ss_conf 9551336988999887755762----248999999999873059778543369999999986344663278899737997
Q ss_pred CCEEEE-CCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 303775-2477778981554430234677338988406510048613224411102789899999999999972220344
Q gi|254781120|r 86 RKWLLR-FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC 164 (384)
Q Consensus 86 ~K~L~~-l~d~~~~dg~~IEsVlip~~~r~T~CvSSQvGC~m~C~FCaTg~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~ 164 (384)
+||||+ ++ ||..||||+||+++|+|+||||||||+|+|+|||||+.||.||||++||++||+.+++.+++.
T Consensus 77 ~K~l~~~l~-----dg~~iEtV~ip~~~r~tlCVSsQvGC~~~C~FCaTg~~G~~RNLs~~EIv~Qv~~~~~~~~~~--- 148 (349)
T COG0820 77 IKWLFEVLP-----DGTMIETVLIPEKDRNTLCVSSQVGCPVGCTFCATGQGGLNRNLSAGEIVEQVLLAAKALGED--- 148 (349)
T ss_pred EEEEEEECC-----CCCEEEEEEEEECCCCEEEEECCCCCCCCCCEECCCCCCCEECCCHHHHHHHHHHHHHHCCCC---
T ss_conf 789989858-----997799999983698569985677867888726456666011217999999999999861766---
Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHC-CCCCCEEEEE
Q ss_conf 443434445458611014410145445428999999603768457787753688851387414788601-2565179984
Q gi|254781120|r 165 EDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243 (384)
Q Consensus 165 ~~~~~~~~~~~~~~i~NiVfMGmGEPl~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~I~~la~-~~~~~LAiSL 243 (384)
.+++|+|||||||||||+|||||..|+++++++.|+++|+|||||||||++|+|+++++ ..+++||+||
T Consensus 149 ----------~~~~i~NVV~MGMGEPl~N~dnV~~a~~i~~~~~G~~ls~R~iTvSTsGi~~~I~~l~~~~~~v~LAiSL 218 (349)
T COG0820 149 ----------FGRRISNVVFMGMGEPLLNLDNVVKALEIINDDEGLGLSKRRITVSTSGIVPRIRKLADEQLGVALAISL 218 (349)
T ss_pred ----------CCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEEC
T ss_conf ----------5643646999647860666999999998626766666465179996588757689987516775899950
Q ss_pred ECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf 04551134441233125789999999999986258945999998726999888999999998325453166751277887
Q gi|254781120|r 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPG 323 (384)
Q Consensus 244 ha~~~~~R~~lmPi~~~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N~~~~ 323 (384)
|||+|++|++|||+|++||+++|++++++|+..+ ++||||||+||+||||+.+||++|++|+++++||||||||||+++
T Consensus 219 Ha~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t-~~rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~~VNLIP~Np~~~ 297 (349)
T COG0820 219 HAPNDELRDQLMPINKKYPIEELLEAIRYYPEKS-GRRVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNLIPYNPVPG 297 (349)
T ss_pred CCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC-CCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 6899899975332366798899999998622215-966899866204654888899999998568974499860689899
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCHHHHHH
Q ss_conf 988688989999999999987987854158777100112002102565
Q gi|254781120|r 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 (384)
Q Consensus 324 ~~~~~~~~~~i~~F~~~L~~~Gi~~tiR~srG~DI~aACGQL~~~~~r 371 (384)
++|++|+.+++.+|.++|.++||.+|||+++|.||+||||||+.+..+
T Consensus 298 ~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~g~DIdaACGQL~~~~~~ 345 (349)
T COG0820 298 SDYERSSKERIRKFLKILKKAGVLVTVRKTRGDDIDAACGQLRGKRIK 345 (349)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHH
T ss_conf 774479689999999999878846883254566311003204554101
No 4
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=99.68 E-value=4.6e-14 Score=125.16 Aligned_cols=215 Identities=17% Similarity=0.313 Sum_probs=158.9
Q ss_pred EEEEECCCCCCCEEEEEECCCCHHCCCCCCC---CCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 5443023467733898840651004861322---4411102789899999999999972220344443434445458611
Q gi|254781120|r 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYT---GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 (384)
Q Consensus 103 IEsVlip~~~r~T~CvSSQvGC~m~C~FCaT---g~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i 179 (384)
||.--+-++.+...-| ---||++.|.||.. -...=-+.+|++|+++.++..+.+.+..++
T Consensus 10 i~~~s~~DGPGiRt~v-Fl~GC~lrC~~ChNpet~~~~~g~~~t~~el~~~i~~~~~f~~~sgG---------------- 72 (246)
T PRK11145 10 FESCGTVDGPGIRFIT-FMQGCLMRCLYCHNRDTWDTHGGKEVTVEELMKEVVTYRHFMNASGG---------------- 72 (246)
T ss_pred EEEECCCCCCCEEEEE-EECCCCCCCCCCCCHHHHCCCCCEECCHHHHHHHHHHHHHHHHHCCC----------------
T ss_conf 6785737589838999-80687788998979678486799875599999999987999860596----------------
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHH----HHHHHCCCCCCEEEEEECCCCHHHHHHC
Q ss_conf 014410145445428999999603768457787753688851387414----7886012565179984045511344412
Q gi|254781120|r 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN----IARVGEEIGVMLAISLHAVSNDLRNILV 255 (384)
Q Consensus 180 ~NiVfMGmGEPl~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~----I~~la~~~~~~LAiSLha~~~~~R~~lm 255 (384)
.|.|-| |||++-++-+...++.+.. .|+ +..+-|+|.++. ++++..-.. ..-+-+-+.+++.-.++.
T Consensus 73 -GVT~SG-GEPllq~ef~~~l~~~~k~-~gi-----~taidTnG~~~~~~~~~~~ll~~~D-~vl~DiK~~d~~~h~~~t 143 (246)
T PRK11145 73 -GVTASG-GEAILQAEFVRDWFRACKK-EGI-----HTCLDTNGFVRRYDPVIDELLDVTD-LVMLDLKQMNDEIHQNLV 143 (246)
T ss_pred -EEEEEC-CCEECCHHHHHHHHHHHHH-CCC-----CEEEECCCCCCCCHHHHHHHHHHCC-EEEECCCCCCHHHHHHHH
T ss_conf -389869-9512689999999999988-799-----8999899998755799999886323-457646668989999998
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCC--CEEEEEECCC------------C
Q ss_conf 3312578999999999998625894599999872699988899999999832545--3166751277------------8
Q gi|254781120|r 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNP------------W 321 (384)
Q Consensus 256 Pi~~~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~--~~vNLIp~N~------------~ 321 (384)
=. +.+.+++-++... .. +..+.+-+++|.|+||+.+++++++++++.++ -+|+|+||++ .
T Consensus 144 G~----~n~~iL~nl~~l~-~~-~~~~~iR~pvIPg~nD~~e~i~~~a~fl~~l~~v~~v~lLPyH~~G~~Ky~~lg~~Y 217 (246)
T PRK11145 144 GV----SNHRTLEFARYLA-KR-NQKTWIRYVVVPGWTDDDDSAHRLGEFIKDMGNIEKVELLPYHELGKHKWEAMGEEY 217 (246)
T ss_pred CC----CCHHHHHHHHHHH-HC-CCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHCCCCC
T ss_conf 88----9189999999999-78-997899886779988999999999999997699763665788756654799839998
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf 8798868898999999999998798785
Q gi|254781120|r 322 PGCEYLCSDQKDIVTFSECIKRSGYSSP 349 (384)
Q Consensus 322 ~~~~~~~~~~~~i~~F~~~L~~~Gi~~t 349 (384)
+-.++.+|+.+.++++.+++++.|+.+.
T Consensus 218 ~~~~~~~~~~e~l~~~~~i~~~~Gl~vv 245 (246)
T PRK11145 218 KLDGVKPPSKETMERIKGILEQYGHNVM 245 (246)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 8889899799999999999998399886
No 5
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=99.48 E-value=1.3e-11 Score=107.03 Aligned_cols=191 Identities=17% Similarity=0.306 Sum_probs=145.7
Q ss_pred CCCCCCCHHH-CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 1322441110-278989999999999997222034444343444545861101441014544542899999960376845
Q gi|254781120|r 130 FCYTGTQKLV-RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 (384)
Q Consensus 130 FCaTg~~G~~-RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl~N~d~v~~ai~~l~~~~ 208 (384)
.|-++...+. +..|+.|++.+|..-+.+.+..++ .|-|-| ||||+-.|-+...++.+. ..
T Consensus 6 ~Cp~~A~~~~G~~~tveel~~~i~kd~~fy~~SgG-----------------GVT~SG-GEpl~Q~~F~~ellk~~k-~~ 66 (213)
T PRK10076 6 ECPSGAFERIGRDISLDALEREVMKDDIFFRTSGG-----------------GVTLSG-GEVLMQAEFATRFLQRLR-LW 66 (213)
T ss_pred HCHHHHHHHHCEEEEHHHHHHHHHHHHHHHHCCCC-----------------EEEEEC-CHHHCCHHHHHHHHHHHH-HC
T ss_conf 78778887526681099999999971999824798-----------------078607-526359999999999998-66
Q ss_pred CCCCCCCEEEEEECCCCH--HHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 778775368885138741--478860125651799840455113444123312578999999999998625894599999
Q gi|254781120|r 209 GLSFSKRRITLSTSGFVP--NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286 (384)
Q Consensus 209 g~~~~~r~ITvST~Gi~p--~I~~la~~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~y~~~~~~rrit~EY 286 (384)
|++ .+|-|||.+| .+.+++.-...-| +-+-+.+++.-.++-=. +.+.+++-++...+ . +..+.+-+
T Consensus 67 gih-----taieTsG~~~~~~~~~~~~~~Dl~L-~DiK~~d~~~h~~~TG~----~n~~il~Nl~~l~~-~-~~~v~iR~ 134 (213)
T PRK10076 67 GVS-----CAIETAGDAPASKLLPLAKLCDEVL-FDLKIMDATQARDVVKM----NLPRVLENLRLLVS-E-GVNVIPRL 134 (213)
T ss_pred CCC-----EEEECCCCCCHHHHHHHHHHCCEEE-EEECCCCHHHHHHHHCC----CHHHHHHHHHHHHH-C-CCCEEEEE
T ss_conf 998-----8997688888999999998459899-86177984899999799----93999999999996-7-99689988
Q ss_pred EEECCCCCCHHHHHHHHHHHCCCCC-EEEEEECCCC------------CCCCCCCCCHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 8726999888999999998325453-1667512778------------879886889899999999999879878541
Q gi|254781120|r 287 VMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPW------------PGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351 (384)
Q Consensus 287 vli~gvNDs~e~a~~L~~ll~~~~~-~vNLIp~N~~------------~~~~~~~~~~~~i~~F~~~L~~~Gi~~tiR 351 (384)
++|.|+||+.+++++++++++.+.+ +|+|+||++. +-.++++|+++.++.+.+++++.|+.|+|-
T Consensus 135 pvIPg~nd~~e~i~~~~~f~~~l~v~~veLLPYH~~G~~Ky~~Lg~~Y~l~~~~~p~~e~~~~~~~i~~~~G~~v~IG 212 (213)
T PRK10076 135 PLIPGFTLSRENMQQALDVLIPLNIRQIHLLPFHQYGEPKYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQVTVG 212 (213)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 677997899999999999999869977997188413079999978878778999859999999999999669858849
No 6
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme; InterPro: IPR012838 Members of this family are iron-sulphur proteins with a radical-SAM domain. A single glycine residue in 2.3.1.54 from EC, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of a proton from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue .; GO: 0043365 [formate-C-acetyltransferase]-activating enzyme activity.
Probab=99.38 E-value=6.3e-11 Score=101.96 Aligned_cols=213 Identities=21% Similarity=0.351 Sum_probs=160.5
Q ss_pred EEEEEECCCCCCCEEEEEECCCCHHCCCCCC---CCCCHHH-CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 5544302346773389884065100486132---2441110-27898999999999999722203444434344454586
Q gi|254781120|r 102 EIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLV-RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 (384)
Q Consensus 102 ~IEsVlip~~~r~T~CvSSQvGC~m~C~FCa---Tg~~G~~-RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~ 177 (384)
++||.---++-+.=.||== -||++.|.||+ |=.++-. +-.|++|++..|--.+.++...+++
T Consensus 4 S~Es~G~vDGPG~RFvvFm-qGC~lRC~YChNPDTW~~~~~G~~~t~~el~~e~~~yk~f~~~sGGG------------- 69 (243)
T TIGR02493 4 SVESMGTVDGPGIRFVVFM-QGCPLRCQYCHNPDTWDLKKGGTEVTVEELIKEVKSYKDFFKASGGG------------- 69 (243)
T ss_pred CEEECCCCCCCCCEEEEEE-CCHHHHHHHCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHCCCCC-------------
T ss_conf 2353452238850687754-35367753058987433588781207899999999899887207995-------------
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECC----CCHH----HHHHHCCCCCCEEEEEECCCCH
Q ss_conf 1101441014544542899999960376845778775368885138----7414----7886012565179984045511
Q gi|254781120|r 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG----FVPN----IARVGEEIGVMLAISLHAVSND 249 (384)
Q Consensus 178 ~i~NiVfMGmGEPl~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~G----i~p~----I~~la~~~~~~LAiSLha~~~~ 249 (384)
|=|-| ||||+=.+-|...+.......|+ |-++-|+| .+++ ++++.+..+-=| +=+=+.|++
T Consensus 70 ----vT~SG-GEPllQ~~F~~~~f~~cK~~~Gi-----HTclDT~GGCftf~~~~~~~~~~lLe~TDLvL-LDiK~~~~~ 138 (243)
T TIGR02493 70 ----VTVSG-GEPLLQPEFVLELFKACKKELGI-----HTCLDTSGGCFTFLGGFTEAADELLEVTDLVL-LDIKHIDPE 138 (243)
T ss_pred ----EEEEC-CCCCCCHHHHHHHHHHHHHHCCC-----EEEEECCCCHHHHHCCHHHHHHHHHHCCCEEE-EECCCCCHH
T ss_conf ----89868-95020169999999999985698-----38874488343341212489997510058788-623436812
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCC---EEEEEECCCC-----
Q ss_conf 34441233125789999999999986258945999998726999888999999998325453---1667512778-----
Q gi|254781120|r 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA---KINLIPFNPW----- 321 (384)
Q Consensus 250 ~R~~lmPi~~~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~---~vNLIp~N~~----- 321 (384)
.-.+|.=. -+++.-++-+++.. .. ++++.+=|||+.|-.|+.||..+|++|++.++- ||-++||..-
T Consensus 139 ~y~~LTg~---~~~~ptl~Fa~~L~-~~-~kP~WiRYVlVPGyTD~~eDi~~l~~fv~~~~~averVe~LPYH~LG~~KW 213 (243)
T TIGR02493 139 KYKKLTGV---KSLEPTLEFAKYLA-KR-NKPIWIRYVLVPGYTDSEEDIEALAEFVKTLPNAVERVEVLPYHQLGVYKW 213 (243)
T ss_pred HCCCCCCC---CCCHHHHHHHHHHH-HC-CCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHH
T ss_conf 40001456---77524589999999-65-898899998658877998999999999974699279986568860211038
Q ss_pred -------CCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf -------87988688989999999999987
Q gi|254781120|r 322 -------PGCEYLCSDQKDIVTFSECIKRS 344 (384)
Q Consensus 322 -------~~~~~~~~~~~~i~~F~~~L~~~ 344 (384)
+--+-++|+.+.++.-.++++++
T Consensus 214 e~~g~~Y~L~~~~~p~~e~~~~~~~~~~~~ 243 (243)
T TIGR02493 214 EALGIEYKLEGVKPPNKEQLERIKEIFKEY 243 (243)
T ss_pred HHCCCCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 766897588888987989999999997329
No 7
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=99.32 E-value=7.3e-10 Score=94.09 Aligned_cols=199 Identities=20% Similarity=0.328 Sum_probs=143.5
Q ss_pred CCHHCCCCCCCCCCHHHCCCC--------HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHH--
Q ss_conf 510048613224411102789--------8999999999999722203444434344454586110144101454454--
Q gi|254781120|r 123 GCSLTCSFCYTGTQKLVRNLT--------AEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC-- 192 (384)
Q Consensus 123 GC~m~C~FCaTg~~G~~RNLt--------~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl~-- 192 (384)
=|.-+|.||--| ...+.+ .+.|.+|+-....+.+ ..+.++++|-|-|-|||-+
T Consensus 33 ~Cs~~CvyC~~G---~~~~~~~~~~efi~~~~I~~~~~~~~~~~g--------------~ea~~pd~vtis~~GEPTLy~ 95 (296)
T COG0731 33 WCSYNCVYCWRG---RTKKGTPERPEFIVEESILEELKLLLGYKG--------------DEATEPDHVTISLSGEPTLYP 95 (296)
T ss_pred HHCCCCEEEECC---CCCCCCCCCCCEECHHHHHHHHHHHHCCCC--------------CCCCCCCEEEEECCCCCCCCC
T ss_conf 435777589666---777777778724158999999999842256--------------656788779993798833464
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 28999999603768457787753688851387414788601256517998404551134441233125789999999999
Q gi|254781120|r 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 (384)
Q Consensus 193 N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~I~~la~~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~ 272 (384)
|+++.+.+++-+. . ...-|=|-|..|...+=.+ .+-.|.+||.|++.++-.+|---..+-.++.+++.+..
T Consensus 96 ~L~elI~~~k~~g----~----~~tflvTNgslpdv~~~L~-~~dql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L~~ 166 (296)
T COG0731 96 NLGELIEEIKKRG----K----KTTFLVTNGSLPDVLEELK-LPDQLYVSLDAPDEKTFRRINRPHKKDSWEKILEGLEI 166 (296)
T ss_pred CHHHHHHHHHHCC----C----CEEEEEECCCHHHHHHHHC-CCCEEEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 8899999998607----9----5089993897699998740-58879998146888899983488874529999999997
Q ss_pred HHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCC-CCEEEEEECCCCCCCCCC-----CCCHHHHHHHHHHHHHC-C
Q ss_conf 9862589459999987269998889999999983254-531667512778879886-----88989999999999987-9
Q gi|254781120|r 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI-PAKINLIPFNPWPGCEYL-----CSDQKDIVTFSECIKRS-G 345 (384)
Q Consensus 273 y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~-~~~vNLIp~N~~~~~~~~-----~~~~~~i~~F~~~L~~~-G 345 (384)
+.+.-+ -+..+|-.|++|+||+.++.+++++|++.. |..|-+=-|--.+.+.|+ .|..+.+..|.+.|.+. |
T Consensus 167 ~~~~~~-~~~vir~tlvkg~N~~~e~~~~~a~ll~~~~Pd~velk~~~rpgas~~~l~~~~~p~~e~~~~f~~~l~~~~~ 245 (296)
T COG0731 167 FRSEYK-GRTVIRTTLVKGINDDEEELEEYAELLERINPDFVELKTYMRPGASRYRLPRSNMPLHEEVLEFAKELGEELG 245 (296)
T ss_pred HHHCCC-CCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 401278-7489999985264687088999999998539976998347568767605670016445999999998632357
Q ss_pred CEE
Q ss_conf 878
Q gi|254781120|r 346 YSS 348 (384)
Q Consensus 346 i~~ 348 (384)
+..
T Consensus 246 ~~~ 248 (296)
T COG0731 246 YEI 248 (296)
T ss_pred EEE
T ss_conf 455
No 8
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=99.11 E-value=9.9e-09 Score=85.71 Aligned_cols=197 Identities=20% Similarity=0.331 Sum_probs=134.7
Q ss_pred EEEEEECCCCHHCCCCCCC-CCCHH-----HCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 3898840651004861322-44111-----02789899999999999972220344443434445458611014410145
Q gi|254781120|r 115 TLCVSSQVGCSLTCSFCYT-GTQKL-----VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 (384)
Q Consensus 115 T~CvSSQvGC~m~C~FCaT-g~~G~-----~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmG 188 (384)
-+=||---=|.+.|.||.- |..+. ..-||.+||..=+-.+.+ ++ |+.|=+-| |
T Consensus 18 yLRiSvTdrCN~rC~YCmpe~~~~~~~~~~~~~Ls~eEi~~i~~~~~~-lG-------------------i~kiRlTG-G 76 (334)
T PRK00164 18 YLRLSVTDRCNFRCTYCMPEGYFGLTFLPKEELLSLEEIERLVRAFAA-LG-------------------VRKIRLTG-G 76 (334)
T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHH-CC-------------------CCEEEECC-C
T ss_conf 667885044047387789977778788873422999999999999997-09-------------------62798607-8
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCC--HHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHH
Q ss_conf 4454289999996037684577877536888513874--14788601256517998404551134441233125789999
Q gi|254781120|r 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEML 266 (384)
Q Consensus 189 EPl~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~--p~I~~la~~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l 266 (384)
|||.. ..+...++.+..-.| -..|+++|-|+. ...++|.+--=-.+-|||++-+++.-.+|-- +-.++.+
T Consensus 77 EPLlR-~di~~li~~l~~~~g----i~~v~lTTNG~lL~~~a~~Lk~aGL~riNISLDsLd~~~f~~IT~---~~~l~~V 148 (334)
T PRK00164 77 EPLLR-KDLEDIIARLAALPG----IRDLALTTNGYLLARRAAALKDAGLTRVNVSLDSLDPERFKAITG---RDRLDQV 148 (334)
T ss_pred CCCCC-CCHHHHHHHHHHCCC----CCCEEEECCHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHC---CCCHHHH
T ss_conf 84323-578999999863279----751788444889999999999859986997113189999999848---9975999
Q ss_pred HHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCC-CCCCCCCHHHHHHHHHHHHH
Q ss_conf 999999986258945999998726999888999999998325453166751277887-98868898999999999998
Q gi|254781120|r 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKR 343 (384)
Q Consensus 267 ~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N~~~~-~~~~~~~~~~i~~F~~~L~~ 343 (384)
++.++.-.+ ..-.+|-+..|+++|+||. +...|++|.+..+..|-+|-|=|+.. ..|.....-..+...+.|.+
T Consensus 149 l~gI~~A~~-~G~~~vKiN~V~~~g~N~d--Ei~~li~~~~~~~i~vRFIE~Mp~g~~~~~~~~~~~~~~~i~~~l~~ 223 (334)
T PRK00164 149 LAGIDAALA-AGLEPVKVNAVLMKGVNDD--EIPDLLRWAKDRGIQLRFIELMPTGEGNEWFRDHHLSGAEIRARLAE 223 (334)
T ss_pred HHHHHHHHH-CCCCCEEEEEEEECCCCHH--HHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHCCCCCHHHHHHHHHH
T ss_conf 999999995-8987616899963798989--99999999964696599999821677764353065489999999985
No 9
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=6.6e-08 Score=79.58 Aligned_cols=213 Identities=19% Similarity=0.325 Sum_probs=144.4
Q ss_pred EEEEECCCCCCCEEEEEECCCCHHCCCCCCCCCCHH-HCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 544302346773389884065100486132244111-0278989999999999997222034444343444545861101
Q gi|254781120|r 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKL-VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 (384)
Q Consensus 103 IEsVlip~~~r~T~CvSSQvGC~m~C~FCaTg~~G~-~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~N 181 (384)
||+.-+-+....+..+=.-.||++.|.||..=..-- -+-.+..|+...++.-.... ...+..
T Consensus 24 ie~~~~~d~~g~~~~~vf~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~~~-----------------~~~~~g 86 (260)
T COG1180 24 IEKKPLVDGPGSIRLSVFLQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKAFY-----------------SESGGG 86 (260)
T ss_pred CEEECCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHCCCCCCHHHCCHHHHHHHHHH-----------------CCCCCE
T ss_conf 506477467984499998789899899897946760656565645789899998743-----------------169988
Q ss_pred EEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHH--HHHHHCCCCCCEEEEEECCCCHHHHHHCCCCC
Q ss_conf 4410145445428999999603768457787753688851387414--78860125651799840455113444123312
Q gi|254781120|r 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN--IARVGEEIGVMLAISLHAVSNDLRNILVPINR 259 (384)
Q Consensus 182 iVfMGmGEPl~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~--I~~la~~~~~~LAiSLha~~~~~R~~lmPi~~ 259 (384)
|+|-| |||+..++-+...++...+. |+. +++.|+|..+. .+++.+-.. ...+-|-+.+++.-.++.=
T Consensus 87 vt~SG-GEP~~q~e~~~~~~~~ake~-Gl~-----~~l~TnG~~~~~~~~~l~~~~D-~v~~DlK~~~~~~yr~~tg--- 155 (260)
T COG1180 87 VTFSG-GEPTLQAEFALDLLRAAKER-GLH-----VALDTNGFLPPEALEELLPLLD-AVLLDLKAFDDELYRKLTG--- 155 (260)
T ss_pred EEEEC-CHHHHHHHHHHHHHHHHHHC-CCE-----EEEECCCCCCHHHHHHHHHHCC-CEEEECCCCCHHHHHHHHC---
T ss_conf 99989-60444399999999999987-990-----8997689988268999997423-1488406688788898756---
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCC--CCEEEEEECCCCCCCCCCC-CCHHHHHH
Q ss_conf 57899999999999862589459999987269998889999999983254--5316675127788798868-89899999
Q gi|254781120|r 260 KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI--PAKINLIPFNPWPGCEYLC-SDQKDIVT 336 (384)
Q Consensus 260 ~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~--~~~vNLIp~N~~~~~~~~~-~~~~~i~~ 336 (384)
-+.+.+++.++...+ . +..+-+-++++.|.||+.+++++++++++++ ...+-+.||.|.-...+.+ +..+.++.
T Consensus 156 -~~~~~vl~~~~~l~~-~-g~~ve~r~lviPg~~d~~e~i~~i~~~i~~~~~~~p~~~l~fhp~~~~~~~p~~~~~~le~ 232 (260)
T COG1180 156 -ADNEPVLENLELLAD-L-GVHVEIRTLVIPGYNDDEEEIRELAEFIADLGPEIPIHLLRFHPDYKLKDLPPTPVETLEE 232 (260)
T ss_pred -CCHHHHHHHHHHHHH-C-CCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCHHCCCCCCCCHHHHHH
T ss_conf -871688999999861-7-9839998873389889999999999999730866655875668740113579992888998
Q ss_pred HHHHHHHCCC
Q ss_conf 9999998798
Q gi|254781120|r 337 FSECIKRSGY 346 (384)
Q Consensus 337 F~~~L~~~Gi 346 (384)
..+.-.+.|.
T Consensus 233 ~~~~a~~~~~ 242 (260)
T COG1180 233 AKKLAKEEGL 242 (260)
T ss_pred HHHHHHHHHH
T ss_conf 8877899988
No 10
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=99.06 E-value=3e-08 Score=82.14 Aligned_cols=195 Identities=24% Similarity=0.327 Sum_probs=129.2
Q ss_pred EEEEEECCCCHHCCCCCCCCCCHH-H--CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHH
Q ss_conf 389884065100486132244111-0--2789899999999999972220344443434445458611014410145445
Q gi|254781120|r 115 TLCVSSQVGCSLTCSFCYTGTQKL-V--RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191 (384)
Q Consensus 115 T~CvSSQvGC~m~C~FCaTg~~G~-~--RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl 191 (384)
-+=||---=|.+.|.||..--..+ . .-||..||..=+-.+ ..++ |+.|=+-| ||||
T Consensus 15 yLRiSvTdrCN~rC~YCmpeg~~~~~~~~~Ls~eEi~~l~~~~-~~~G-------------------i~kvRlTG-GEPL 73 (329)
T PRK13361 15 YLRLSVTDRCDFRCVYCMSEDPCFLPRDQVLTLEELAWLAQAF-TELG-------------------VRKIRLTG-GEPL 73 (329)
T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-HHCC-------------------CEEEEEEC-CCCC
T ss_conf 6678852440583878799899878702468999999999999-9729-------------------52899627-8822
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCC--HHHHHHHCCCC-CCEEEEEECCCCHHHHHHCCCCCCCCHHHHHH
Q ss_conf 4289999996037684577877536888513874--14788601256-51799840455113444123312578999999
Q gi|254781120|r 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 (384)
Q Consensus 192 ~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~--p~I~~la~~~~-~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~ 268 (384)
.- ..+..-++.+..-. +-..|+++|-|+. ....+|.+ .+ -.+-|||++-+++.-.+|- ++-.++.+++
T Consensus 74 lR-~dl~~li~~l~~~~----gi~~islTTNG~lL~~~a~~Lk~-aGL~rvNISLDsLd~~~f~~IT---r~~~l~~Vl~ 144 (329)
T PRK13361 74 VR-TGCDQLVARLGKLP----GLEELSMTTNGSRLARFAAELAD-AGLKRLNISLDTLNPDLFAALT---RNGRLERVIA 144 (329)
T ss_pred CC-CCHHHHHHHHHHCC----CCCEEEEECCHHHHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHH---CCCCHHHHHH
T ss_conf 35-68899999986179----97718996647768999999997-7998699735779999999772---8997699999
Q ss_pred HHHHHHHHCCC-CEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCC-CCCCCCHHHHHHHHHHHHH
Q ss_conf 99999862589-459999987269998889999999983254531667512778879-8868898999999999998
Q gi|254781120|r 269 ACRHYPGLSNA-RRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKR 343 (384)
Q Consensus 269 a~~~y~~~~~~-rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N~~~~~-~~~~~~~~~i~~F~~~L~~ 343 (384)
.++.-.+ . | .+|-+..|+++|+|| ++...|+++.+..++.|.+|-|=|+.+. .|.....-..++..+.|.+
T Consensus 145 gI~aA~~-~-G~~~VKiN~V~lrg~Nd--dEi~~l~~~~~~~~~~vRFIE~MP~g~~~~~~~~~~~~~~ei~~~i~~ 217 (329)
T PRK13361 145 GIDAAKA-A-GFERIKLNAVILRGQND--DEVLDLVEFCRERGLDIAFIEEMPLGEIDERKRARHCSSDEVRAIIET 217 (329)
T ss_pred HHHHHHH-C-CCCEEEEEEEEECCCCH--HHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHCCCCCHHHHHHHHHH
T ss_conf 9999997-7-99738899998368788--899999999974898369887432687554000265679999999986
No 11
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=99.01 E-value=5.5e-08 Score=80.15 Aligned_cols=178 Identities=20% Similarity=0.295 Sum_probs=114.4
Q ss_pred EECCCCHHCCCCCCCCCCHHH---CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHH
Q ss_conf 840651004861322441110---27898999999999999722203444434344454586110144101454454289
Q gi|254781120|r 119 SSQVGCSLTCSFCYTGTQKLV---RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195 (384)
Q Consensus 119 SSQvGC~m~C~FCaTg~~G~~---RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl~N~d 195 (384)
..+-||+.+|.||......-. +.....++.+.+..... ..+ ..++.+.|||+.+.
T Consensus 2 ~~srGC~~~C~fC~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~-~~~~~~~g~~~~~~- 59 (204)
T cd01335 2 ELTRGCNLNCGFCSNPASKGRGPESPPEIEEILDIVLEAKE--------------------RGV-EVVILTGGEPLLYP- 59 (204)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH--------------------CCC-EEEEEECCCCCCCC-
T ss_conf 21637385698799875479875667889999999999987--------------------598-69997246766665-
Q ss_pred HHHHHHHCCCCCCCCCCCCCEEEEEECCCC--H-HHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 999996037684577877536888513874--1-4788601256517998404551134441233125789999999999
Q gi|254781120|r 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFV--P-NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 (384)
Q Consensus 196 ~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~--p-~I~~la~~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~ 272 (384)
.+...++.+... .+..+++++|.+.. + .++.+.+.....+.+|+.+.+++.++.+. .+..+.++.+++++.
T Consensus 60 ~~~~~l~~~~~~----~~~~~i~~~t~~~~~~~~~l~~l~~~g~~~~~i~les~~~~~~~~~~--~~~~~~~~~~~~~~~ 133 (204)
T cd01335 60 ELAELLRRLKKE----LPGFEISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKIR--GSGESFKERLEALKE 133 (204)
T ss_pred CCCHHHHHHHHC----CCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH--CCCCCHHHHHHHHHH
T ss_conf 321013545530----68717999833654769998775403754222243568999999984--889975999999999
Q ss_pred HHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCC--CCEEEEEECCCCCCCCCC
Q ss_conf 9862589459999987269998889999999983254--531667512778879886
Q gi|254781120|r 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI--PAKINLIPFNPWPGCEYL 327 (384)
Q Consensus 273 y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~--~~~vNLIp~N~~~~~~~~ 327 (384)
..+ . +-.+...+++--+. ++.++..+-.+++... +-.+++.+|.|.++.++.
T Consensus 134 ~~~-~-g~~~~~~~i~G~p~-et~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gt~~~ 187 (204)
T cd01335 134 LRE-A-GLGLSTTLLVGLGD-EDEEDDLEELELLAEFRSPDRVSLFRLLPEEGTPLE 187 (204)
T ss_pred HHH-C-CCEEEEEEEECCCC-CCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHH
T ss_conf 986-7-99899999982799-999999999999985189988989876622898033
No 12
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A; InterPro: IPR013485 This entry consists of archaeal proteins which are predicted to be functionally equivalent to MoaA (molybdenum cofactor biosynthesis protein A) from bacteria (see IPR013483 from INTERPRO).; GO: 0046872 metal ion binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=98.99 E-value=2.9e-08 Score=82.19 Aligned_cols=199 Identities=22% Similarity=0.352 Sum_probs=141.6
Q ss_pred EEECCCCHHCCCCCC-CCC------CHHHCC-CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 884065100486132-244------111027-898999999999999722203444434344454586110144101454
Q gi|254781120|r 118 VSSQVGCSLTCSFCY-TGT------QKLVRN-LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 (384)
Q Consensus 118 vSSQvGC~m~C~FCa-Tg~------~G~~RN-Lt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGE 189 (384)
||==-=|.+.|-||. =|. .|=..+ ||++||.- |.-+...++-. .-||| =||
T Consensus 14 is~T~~CN~~CfyCH~EG~~~~~~r~gp~~~~Ls~eei~~-~~~~a~~fGV~--------------kvKlT------GGE 72 (324)
T TIGR02668 14 ISVTDECNLSCFYCHREGEDESRGRQGPGGNELSPEEIER-IVRVASEFGVR--------------KVKLT------GGE 72 (324)
T ss_pred EEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHHCCCC--------------EEEEC------CCC
T ss_conf 5773423864221036788888888888644558999999-99999870883--------------27751------787
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCC------CCCEEEEEECCCCHHHHHHC--CCCCCC
Q ss_conf 4542899999960376845778775368885138741478860125------65179984045511344412--331257
Q gi|254781120|r 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI------GVMLAISLHAVSNDLRNILV--PINRKY 261 (384)
Q Consensus 190 Pl~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~I~~la~~~------~~~LAiSLha~~~~~R~~lm--Pi~~~~ 261 (384)
||+=-| +..=|+.+. +.+.+-|++.|-|+. ++++|+++ .|| |||||.+++.-.+|= +. -
T Consensus 73 PlLR~D-~~~Ii~~~~-----~~~~~~vSmTTNG~L--L~~~A~~Lk~AGLdRVN--VSLdtld~e~Y~kITG~~~---~ 139 (324)
T TIGR02668 73 PLLRKD-LIEIIRRIK-----DYGIKDVSMTTNGIL--LEKLAKKLKEAGLDRVN--VSLDTLDPEKYKKITGQSR---D 139 (324)
T ss_pred CCHHHH-HHHHHHHHC-----CCCCEEEECCCCHHH--HHHHHHHHHHHCCCEEE--ECCCCCCHHHHHHHCCCCC---C
T ss_conf 434566-999998614-----675034420303144--89899999982856131--2026788678886448998---6
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHC--CCCCEEEEEECCCCC-C--CCCCCCCHHHHHH
Q ss_conf 8999999999998625894599999872699988899999999832--545316675127788-7--9886889899999
Q gi|254781120|r 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK--GIPAKINLIPFNPWP-G--CEYLCSDQKDIVT 336 (384)
Q Consensus 262 ~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~--~~~~~vNLIp~N~~~-~--~~~~~~~~~~i~~ 336 (384)
.++++++.++.=.. ..=..|=+..|+++|+|+.. ....|.+|+. ...+.+-||-|-|.. | ++....-...+..
T Consensus 140 ~~~~Vi~GI~~A~~-~GL~PVKlN~Vvl~G~N~~~-~~~~m~~f~~~~~~g~~LQlIEl~~~~~G~~s~~~~~y~~d~~~ 217 (324)
T TIGR02668 140 ALDRVIEGIESAVD-AGLTPVKLNMVVLKGINDNE-EIPDMVEFAADYEGGAILQLIELMPPGEGENSKELKKYHIDIDP 217 (324)
T ss_pred HHHHHHHHHHHHHH-CCCCCEEEEEEEECCCCCCC-CHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHCCCHHH
T ss_conf 07899999999997-28981378888754778850-07999999987515936898611268888872211423177378
Q ss_pred HHHHHHHCCCEEEECC
Q ss_conf 9999998798785415
Q gi|254781120|r 337 FSECIKRSGYSSPIRT 352 (384)
Q Consensus 337 F~~~L~~~Gi~~tiR~ 352 (384)
..+.|.+....+..|+
T Consensus 218 ie~~l~~~A~~~~~r~ 233 (324)
T TIGR02668 218 IEEELEKRADRVETRR 233 (324)
T ss_pred HHHHHHHHCCCCHHCC
T ss_conf 9999997504110000
No 13
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=98.91 E-value=1.8e-07 Score=76.38 Aligned_cols=204 Identities=19% Similarity=0.332 Sum_probs=140.6
Q ss_pred CEEEEEECCCCHHCCCCCCCCC-CHHHC---CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 3389884065100486132244-11102---7898999999999999722203444434344454586110144101454
Q gi|254781120|r 114 GTLCVSSQVGCSLTCSFCYTGT-QKLVR---NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 (384)
Q Consensus 114 ~T~CvSSQvGC~m~C~FCaTg~-~G~~R---NLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGE 189 (384)
.-+=+|--=-|.++|.||.--- +.|.- -||.+||..=+-.+.. ++- ..-|+| =||
T Consensus 11 ~~LRiSvTdrCNfrC~YCm~eg~~~~~~~~~~Ls~eei~~~~~~~~~-~Gv--------------~kvRlT------GGE 69 (322)
T COG2896 11 RYLRISVTDRCNFRCTYCMPEGPLAFLPKEELLSLEEIRRLVRAFAE-LGV--------------EKVRLT------GGE 69 (322)
T ss_pred CEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCC--------------CEEEEE------CCC
T ss_conf 20799982673774644688886566765454899999999999997-396--------------458971------898
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCC---C-CCEEEEEECCCCHHHHHHCCCCCCCCHHH
Q ss_conf 4542899999960376845778775368885138741478860125---6-51799840455113444123312578999
Q gi|254781120|r 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI---G-VMLAISLHAVSNDLRNILVPINRKYPLEM 265 (384)
Q Consensus 190 Pl~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~I~~la~~~---~-~~LAiSLha~~~~~R~~lmPi~~~~~l~~ 265 (384)
||+. ..+..-++.+... +-+.|+++|.|+. +.+.|+++ . -.+-||||+.+++.-.+|-..+. +++
T Consensus 70 PllR-~dl~eIi~~l~~~-----~~~~islTTNG~~--L~~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT~~~~---~~~ 138 (322)
T COG2896 70 PLLR-KDLDEIIARLARL-----GIRDLSLTTNGVL--LARRAADLKEAGLDRVNVSLDSLDPEKFRKITGRDR---LDR 138 (322)
T ss_pred CHHH-CCHHHHHHHHHHC-----CCCEEEEECCHHH--HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCC---HHH
T ss_conf 3133-2799999987434-----6442887445676--799999999759868995034499899998867892---999
Q ss_pred HHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCC-CCCCCHHHHHHHHHHHHHC
Q ss_conf 999999998625894599999872699988899999999832545316675127788798-8688989999999999987
Q gi|254781120|r 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRS 344 (384)
Q Consensus 266 l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N~~~~~~-~~~~~~~~i~~F~~~L~~~ 344 (384)
+++.+++..+ ..-.+|.+.-|+++|||| .+...|++++++.+..+-+|-|=|+...+ +.....-......+.+.+.
T Consensus 139 Vl~GI~~A~~-~Gl~pVKlN~Vv~kgvNd--~ei~~l~e~~~~~~~~lrfIE~m~~g~~~~~~~~~~~~~~~i~~~l~~~ 215 (322)
T COG2896 139 VLEGIDAAVE-AGLTPVKLNTVLMKGVND--DEIEDLLEFAKERGAQLRFIELMPLGEGNSWRLDKYLSLDEILRKLEER 215 (322)
T ss_pred HHHHHHHHHH-CCCCCEEEEEEEECCCCH--HHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHCCCCHHHHHHHHHHH
T ss_conf 9999999997-699855788898469887--8999999998526984479998666865403440445499999999862
Q ss_pred CCEEEECC
Q ss_conf 98785415
Q gi|254781120|r 345 GYSSPIRT 352 (384)
Q Consensus 345 Gi~~tiR~ 352 (384)
+...-+|.
T Consensus 216 ~~~~~~~~ 223 (322)
T COG2896 216 ATLLPVRK 223 (322)
T ss_pred CCCCCCCC
T ss_conf 65334431
No 14
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=98.86 E-value=2.4e-07 Score=75.49 Aligned_cols=188 Identities=18% Similarity=0.314 Sum_probs=120.3
Q ss_pred EEECCCCHHCCCCCCCCCC-HHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHH-HH
Q ss_conf 8840651004861322441-110278989999999999997222034444343444545861101441014544542-89
Q gi|254781120|r 118 VSSQVGCSLTCSFCYTGTQ-KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN-FD 195 (384)
Q Consensus 118 vSSQvGC~m~C~FCaTg~~-G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl~N-~d 195 (384)
+-+.=||+.+|.||..+.. |-.|..+..++++.+..+.+.... . ..-.-+|++.|.+..+ ++
T Consensus 5 ~~~sRGC~~~C~fC~~~~~~~~~~~~~~~~i~~ei~~~~~~~~~---------------~-~~~~~~~~~~~~~~~~~~~ 68 (216)
T smart00729 5 YIITRGCPRRCTFCSFPSARGKLRSRYLEALVREIELLAEKGEK---------------E-ILVGTVFIGGGTPTLLSPE 68 (216)
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC---------------C-CCCEEEEECCCCCCCCCHH
T ss_conf 99987819848429817588964575999999999999970897---------------6-5300110024689888999
Q ss_pred HHHHHHHCCCCCCCCCCCCCEEEEEEC-CCC-H-HHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 999996037684577877536888513-874-1-4788601256517998404551134441233125789999999999
Q gi|254781120|r 196 NVKKSLSIASDSMGLSFSKRRITLSTS-GFV-P-NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 (384)
Q Consensus 196 ~v~~ai~~l~~~~g~~~~~r~ITvST~-Gi~-p-~I~~la~~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~ 272 (384)
.+.+.++.+....+.. ..-.+.+++. +.. + .++.+.+-.--.+.+++.+.+++.++. ++|.++.+++.++++.
T Consensus 69 ~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~e~l~~l~~~g~~~v~~giEs~~~~~l~~---i~k~~~~~~~~~~i~~ 144 (216)
T smart00729 69 QLEELLEAIREILGLA-DDVEITIETRPGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKA---INRGHTVEDVLEAVEK 144 (216)
T ss_pred HHHHHHHHHHHHCCCC-CCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHH---HCCCCCHHHHHHHHHH
T ss_conf 9999999999851435-62699997060215899999999849986666735507899987---1799999999999999
Q ss_pred HHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCC-EEEEEECCCCCCCCCC
Q ss_conf 986258945999998726999888999999998325453-1667512778879886
Q gi|254781120|r 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEYL 327 (384)
Q Consensus 273 y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~-~vNLIp~N~~~~~~~~ 327 (384)
.- ..+...+.. |.++.=-+++.++..+.++++..++. .+++-+|.|.||+++.
T Consensus 145 ~~-~~g~~~~~~-~~i~GlP~et~e~~~~t~~~~~~~~~~~i~~~~~~p~pgT~~~ 198 (216)
T smart00729 145 LR-EAGPIKVST-DLIVGLPGETEEDFEETLKLLKELGPDRVSIFPLSPRPGTPLA 198 (216)
T ss_pred HH-HHCCCEEEE-EEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCEECCCCHHH
T ss_conf 99-858936877-5786799999999999999999469198998748756998466
No 15
>pfam04055 Radical_SAM Radical SAM superfamily. Radical SAM proteins catalyse diverse reactions, including unusual methylations, isomerisation, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation.
Probab=98.86 E-value=1.5e-07 Score=76.98 Aligned_cols=158 Identities=22% Similarity=0.285 Sum_probs=109.4
Q ss_pred EECCCCHHCCCCCCCCC---CHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHH
Q ss_conf 84065100486132244---111027898999999999999722203444434344454586110144101454454289
Q gi|254781120|r 119 SSQVGCSLTCSFCYTGT---QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195 (384)
Q Consensus 119 SSQvGC~m~C~FCaTg~---~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl~N~d 195 (384)
...-||+.+|.||.... ....+.++..+|++++....+ ..+ ..++++.|||+.|.+
T Consensus 2 ~~~~gC~~~C~fC~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------------------~~~-~~i~~~gg~p~~~~~ 60 (165)
T pfam04055 2 IITPGCNLRCTYCAFPSIRARGKGRELSPEEILEEAKELAR--------------------LGV-EVVILTGGEPLLLPD 60 (165)
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH--------------------CCC-EEEEEECCCCCCCHH
T ss_conf 88937487796899978578886522699999999988874--------------------598-599993167666527
Q ss_pred HHHHHHHCCCCCCCCCCCCCEEEEEECCCCHH---HHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 99999603768457787753688851387414---788601256517998404551134441233125789999999999
Q gi|254781120|r 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPN---IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 (384)
Q Consensus 196 ~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~---I~~la~~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~ 272 (384)
.......++.... ...-++++.|.|..+. ++.|++-....+.+|+.+++++.+..+ +++.+.++.+++++.
T Consensus 61 ~~~~~~~~~~~~~---~~~~~~~~~t~~~~~~~~~~~~l~~~g~~~i~~~ie~~~~~~~~~~---~~~~~~~~~~~~i~~ 134 (165)
T pfam04055 61 LVELLERLLKLEE---LEGIRITLETNGTLLDEELLEELKEAGLDRVSISLQSGDDEVLKII---NRGHTFEEVLEALEL 134 (165)
T ss_pred HHHHHHHHHHHCC---CCCEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH---CCCCCHHHHHHHHHH
T ss_conf 7777888765314---6764899998514331045689997198522246355999999985---799998999999999
Q ss_pred HHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 9862589459999987269998889999999983
Q gi|254781120|r 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 (384)
Q Consensus 273 y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll 306 (384)
..+ . |-++ .-+.++..-+++.++...+++++
T Consensus 135 ~~~-~-gi~~-~~~~i~~~~~e~~~~~~~~~~~i 165 (165)
T pfam04055 135 LRE-A-GIPV-VVDNIVGLPGENDEDLEETLELL 165 (165)
T ss_pred HHH-C-CCCE-EEEEEEECCCCCHHHHHHHHHHC
T ss_conf 998-7-9978-89999979999999999996039
No 16
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=98.80 E-value=4.8e-07 Score=73.19 Aligned_cols=185 Identities=18% Similarity=0.280 Sum_probs=117.6
Q ss_pred CCCHHCCCCCCCCCC--HHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHH
Q ss_conf 651004861322441--110278989999999999997222034444343444545861101441014544542899999
Q gi|254781120|r 122 VGCSLTCSFCYTGTQ--KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199 (384)
Q Consensus 122 vGC~m~C~FCaTg~~--G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl~N~d~v~~ 199 (384)
--|.+.|..|..... ....-||.+|+..-+-.+... | +..|+|.| ||||+.-| ...
T Consensus 25 ~~CNL~C~hCy~~~~~~~~~~ELs~~e~~~~id~l~~~------------------G--v~~v~~tG-GEPllr~D-~~e 82 (375)
T PRK05301 25 YRCPLQCPYCSNPLDLARHGAELSTAEWIRVLREARAL------------------G--VLQLHFSG-GEPLLRKD-LEE 82 (375)
T ss_pred CHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC------------------C--CCEEEECC-CCCCCCCC-HHH
T ss_conf 40078784669850048765789999999999999986------------------9--98899618-65245668-999
Q ss_pred HHHCCCCCCCCCCCCCEEEEEECCCC--HH-HHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 96037684577877536888513874--14-7886012565179984045511344412331257899999999999862
Q gi|254781120|r 200 SLSIASDSMGLSFSKRRITLSTSGFV--PN-IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276 (384)
Q Consensus 200 ai~~l~~~~g~~~~~r~ITvST~Gi~--p~-I~~la~~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~y~~~ 276 (384)
-++... ..|+ +++++|.|.. +. +++|.+.---.+.|||++++.++-+++.=+ +-.++..+++++... .
T Consensus 83 i~~~a~-~~G~-----~~~l~TNG~lit~~~a~~L~~~gl~~v~vSlDg~~~e~hD~~rG~--~G~f~~~~~~i~~l~-~ 153 (375)
T PRK05301 83 LVAHAR-RLGL-----YTNLITSGVGLTEARLAALKAAGLDHIQLSFQDSDPELADRIAGT--RGAFAQKLEVARLVK-A 153 (375)
T ss_pred HHHHHH-HCCC-----EEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCC--CCHHHHHHHHHHHHH-H
T ss_conf 999999-7697-----589960674557999999985099889995677987787776378--862999999999999-7
Q ss_pred CCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCE-EEEEECCCC----CCCCCCCCCHHHHHHHHHHH
Q ss_conf 589459999987269998889999999983254531-667512778----87988688989999999999
Q gi|254781120|r 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPW----PGCEYLCSDQKDIVTFSECI 341 (384)
Q Consensus 277 ~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~-vNLIp~N~~----~~~~~~~~~~~~i~~F~~~L 341 (384)
. |-.+.+..++-+. | .++..++.+|+..+.+. ++|..+-+. .+....-|+.+.++.+...+
T Consensus 154 ~-Gi~v~i~~ti~r~-N--~~~l~~i~~la~~lGv~~~~l~~~~~~Gr~~~~r~~L~pt~e~~~~~~~~~ 219 (375)
T PRK05301 154 H-GYPLTLNAVIHRH-N--IDQIPRIIELAVELGADRLELANTQYYGWALLNRAALMPTREQLERAERIV 219 (375)
T ss_pred C-CCCEEEEEEECCC-C--HHHHHHHHHHHHHCCCCEEEEEEEEEECCHHCCHHHHCCCHHHHHHHHHHH
T ss_conf 4-9816999872305-6--888999999999729982898765675102116665379999999999999
No 17
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=98.77 E-value=9.9e-07 Score=70.88 Aligned_cols=260 Identities=17% Similarity=0.241 Sum_probs=161.5
Q ss_pred HHCCCCHHHHHHHHHC-CCCCC-CCEEEE----EEC--CCC-CCCEEEECCCCCCCCCEEEEEEECCCCCCCEEEEE---
Q ss_conf 8334788999998620-22578-702346----531--454-43037752477778981554430234677338988---
Q gi|254781120|r 52 GMSDISQEVRHLLNQH-FSIIY-PEIVDE----KIS--CDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS--- 119 (384)
Q Consensus 52 ~MtnLpk~lR~~L~e~-~~i~~-l~iv~~----~~S--~DG-T~K~L~~l~d~~~~dg~~IEsVlip~~~r~T~CvS--- 119 (384)
.+..++...++.|..+ |.+-. -.-|+. ..| ..| -.|.-|= | |||= -|+-
T Consensus 3 ~~~~~~~~~~~~L~KqgY~ivG~HSaVK~C~Wtk~~lrg~g~CYK~~FY--------G--I~SH---------rCmqmTP 63 (321)
T PRK13762 3 PRIMIPSEIAKLLRKQGYHLVGRHSAVKLCHWTKKALTGGRSCYKSKFY--------G--IESH---------RCVQMTP 63 (321)
T ss_pred CCCCCCHHHHHHHHHCCCEEECCCCCEEECCCHHHHHCCCCCCCCEEEE--------C--CCCC---------CCCCCCC
T ss_conf 4213799999999877987863665624644209881799967230010--------6--0201---------4204480
Q ss_pred ECCCCHHCCCCC---CCCCCHH---HCCCCHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCEEEEECCCCHHH
Q ss_conf 406510048613---2244111---0278989999999999997222034444-34344454586110144101454454
Q gi|254781120|r 120 SQVGCSLTCSFC---YTGTQKL---VRNLTAEEILLQVLLARSLLGDFPGCED-IEGMVIPSVGRKISNIVMMGMGEPLC 192 (384)
Q Consensus 120 SQvGC~m~C~FC---aTg~~G~---~RNLt~~EIv~Qv~~~~~~l~~~~~~~~-~~~~~~~~~~~~i~NiVfMGmGEPl~ 192 (384)
|-..|.-.|.|| .+.-.|. -.--.+.+|++..+-.++.+=.-..+++ ...... ......+++-+-=.|||.+
T Consensus 64 sl~~C~~~CvfCWR~~~~~~~~~~~~~~DdPe~Ive~~i~~h~~li~g~kG~p~v~~er~-~EA~~p~H~AiSL~GEPtl 142 (321)
T PRK13762 64 VLAWCNQRCLFCWRPLEEDVGLLKPPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDKEKF-EEALEPKHVAISLSGEPTL 142 (321)
T ss_pred CHHHHHCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH-HHHCCCHHEEHHHCCCCCC
T ss_conf 077774448565689988876667788889899999999999999730589999898999-8727910010220488632
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHH-HHHHHCCCCCCEEEEEECCCCHHHHHHC-CCCCCCCHHHHHHHH
Q ss_conf 28999999603768457787753688851387414-7886012565179984045511344412-331257899999999
Q gi|254781120|r 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN-IARVGEEIGVMLAISLHAVSNDLRNILV-PINRKYPLEMLIDAC 270 (384)
Q Consensus 193 N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~-I~~la~~~~~~LAiSLha~~~~~R~~lm-Pi~~~~~l~~l~~a~ 270 (384)
|...-..|+.++.. | +| .=+=|-|..|. |++| +..|.+|.|||.|||.|.-.++- |.-. --.+.+++.|
T Consensus 143 -YP~l~eLi~~~h~r-~--~s---tFLVTNg~~P~~l~~l-~~~PTQLYvSldAp~~e~~k~i~rPl~~-d~Wer~~~sL 213 (321)
T PRK13762 143 -YPRLPELIEEFHKR-G--FT---TFLVTNGTRPDVLEKL-EAEPTQLYVSLDAPDKETYNRINRPVIP-DAWERILETL 213 (321)
T ss_pred -CHHHHHHHHHHHHC-C--CC---EEEEECCCCHHHHHHC-CCCCCEEEEEEECCCHHHHHHHHCCCCH-HHHHHHHHHH
T ss_conf -02189999999857-9--83---7998289898999856-6765427998006999999986165533-1899999999
Q ss_pred HHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHC-CCCCEEEEEECCCCCCCCC-----CCCCHHHHHHHHHHHHHC
Q ss_conf 9998625894599999872699988899999999832-5453166751277887988-----688989999999999987
Q gi|254781120|r 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK-GIPAKINLIPFNPWPGCEY-----LCSDQKDIVTFSECIKRS 344 (384)
Q Consensus 271 ~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~-~~~~~vNLIp~N~~~~~~~-----~~~~~~~i~~F~~~L~~~ 344 (384)
+-...+. .|..|--+|++|+||...+ ..++|+. +.|.-|-+=-|--+..+.. .-|..+.+.+|.+.|.+.
T Consensus 214 ~~L~~~~--~RTV~R~TLVkg~Nm~~~~--~yA~Li~~~~P~FIEvK~ym~~G~Sr~rLt~~nmP~heEV~~Fa~~l~~~ 289 (321)
T PRK13762 214 ELLPSKK--TRTVIRITLVKGLNMTDPE--GYAKLIERANPDFVEVKAYMHVGYSRNRLTRDNMPSHEEVREFAKELAEH 289 (321)
T ss_pred HHHHCCC--CCEEEEEEEECCCCCCCHH--HHHHHHHHCCCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHH
T ss_conf 9754379--8759999876565767989--99999985499879871179842677767722399889999999999986
No 18
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=98.75 E-value=9.7e-07 Score=70.96 Aligned_cols=184 Identities=16% Similarity=0.279 Sum_probs=118.0
Q ss_pred CCCHHCCCCCC---CCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHH
Q ss_conf 65100486132---244111027898999999999999722203444434344454586110144101454454289999
Q gi|254781120|r 122 VGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVK 198 (384)
Q Consensus 122 vGC~m~C~FCa---Tg~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl~N~d~v~ 198 (384)
--|.+.|.+|. .-..-+.+.||.+|.+.-+- . .|-++ |.|-| ||||+.- .+.
T Consensus 36 ~rCNL~C~~C~~i~~~~~~l~~~Ls~ee~~~~~~----e-----------------~Gap~--V~itG-GEPLLr~-dl~ 90 (318)
T TIGR03470 36 FRCNLACAGCGKIQYPAEILKQRLSVEECLRAVD----E-----------------CGAPV--VSIPG-GEPLLHP-EID 90 (318)
T ss_pred CCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHH----H-----------------CCCCE--EEECC-CCCCCCC-CHH
T ss_conf 3226778899741367646544389999999999----8-----------------49978--99518-8745564-799
Q ss_pred HHHHCCCCCCCCCCCCCEEEEEECCCC--HHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 996037684577877536888513874--147886012565179984045511344412331257899999999999862
Q gi|254781120|r 199 KSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276 (384)
Q Consensus 199 ~ai~~l~~~~g~~~~~r~ITvST~Gi~--p~I~~la~~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~y~~~ 276 (384)
.-++.+.+ .| ++++++|.|.. ..|+++.+..-..+.|||-++. |.-++++=... ..+..+++++.- +
T Consensus 91 eIv~~a~~-~g-----~~v~l~TNG~Ll~k~i~~~~~~~~~~~~VsLDG~~-e~HD~~r~~~G--~Fd~av~aIr~a--k 159 (318)
T TIGR03470 91 EIVRGLVA-RK-----KFVYLCTNALLLEKKLDKFEPSPYLTFSVHLDGLR-EHHDASVCREG--VFDRAVEAIREA--K 159 (318)
T ss_pred HHHHHHHH-CC-----CEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCH-HHHHHHHCCCC--HHHHHHHHHHHH--H
T ss_conf 99999997-59-----97999775520099999985188836999801787-88668871797--799999999999--9
Q ss_pred CCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCC-EEEEEECCCCCCC---CCCCCCHHHHHHHHHHHHH
Q ss_conf 58945999998726999888999999998325453-1667512778879---8868898999999999998
Q gi|254781120|r 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGC---EYLCSDQKDIVTFSECIKR 343 (384)
Q Consensus 277 ~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~-~vNLIp~N~~~~~---~~~~~~~~~i~~F~~~L~~ 343 (384)
..|-+|++.-++.++ +.+++..++.+++..+.+ .+++.|-...+.. ..--...+.-+.|.++|+.
T Consensus 160 ~~G~~V~iN~Tvf~~--~n~~~i~~~~d~~~~lgVdgi~isp~y~Ye~ap~q~~fl~r~~~~~lfr~il~~ 228 (318)
T TIGR03470 160 ARGFRVTTNTTLFND--TDPEEVAEFFDYLTDLGVDGMTISPGYAYEKAPDQDHFLGRRQTKKLFREVLSN 228 (318)
T ss_pred HCCCCEEEEEEEECC--CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 869946799897068--999999999999987699738976653102376311115899999999999986
No 19
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=98.73 E-value=2.8e-07 Score=74.97 Aligned_cols=204 Identities=18% Similarity=0.330 Sum_probs=129.8
Q ss_pred CCCEEEEEECCCCHHCCCCCCCCCCHHHCCCCHHHHHH--HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 77338988406510048613224411102789899999--9999999722203444434344454586110144101454
Q gi|254781120|r 112 SRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL--QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 (384)
Q Consensus 112 ~r~T~CvSSQvGC~m~C~FCaTg~~G~~RNLt~~EIv~--Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGE 189 (384)
+.+-+-|--.-||.|+|-||.--.--+.|-=..+=.|+ |++-.-....+.. ++-+ -.-.=||||
T Consensus 105 GtNviqVRp~tgCnlnCIfCSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~~K-------------gkgl-EaHlDGqGE 170 (414)
T COG2100 105 GTNVIQVRPSTGCNLNCIFCSVDEGPYSRTRKLDYVVDPEYLLEWFEKVARFK-------------GKGL-EAHLDGQGE 170 (414)
T ss_pred CCEEEEECCCCCCCCEEEEEECCCCCCCCEECCCEEECHHHHHHHHHHHHHHH-------------CCCE-EEEECCCCC
T ss_conf 85179964776643205898525786433002561756899999999999640-------------7872-787537888
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCC---HHHHHHHCC-C-CCCEEEEEECCCCHHHHHHCCCCCCCCHH
Q ss_conf 454289999996037684577877536888513874---147886012-5-65179984045511344412331257899
Q gi|254781120|r 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIARVGEE-I-GVMLAISLHAVSNDLRNILVPINRKYPLE 264 (384)
Q Consensus 190 Pl~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~---p~I~~la~~-~-~~~LAiSLha~~~~~R~~lmPi~~~~~l~ 264 (384)
|++- ......++-+.+-+|.. .+++-|-|.+ ..++.|++- + .+|| |+||.++++-..||-+ +-|+++
T Consensus 171 P~lY-P~l~~lVqalk~~~~v~----vVSmQTng~~L~~~lv~eLeeAGLdRiNl--Sv~aLDpk~Ak~L~G~-~dYdv~ 242 (414)
T COG2100 171 PLLY-PHLVDLVQALKEHKGVE----VVSMQTNGVLLSKKLVDELEEAGLDRINL--SVDALDPKLAKMLAGR-KDYDVK 242 (414)
T ss_pred CCCC-HHHHHHHHHHHCCCCCE----EEEEEECCEECCHHHHHHHHHHCCCEEEE--ECCCCCHHHHHHHCCC-CCCCHH
T ss_conf 7545-33999999974389842----89985076444599999999708755886--2023798898774284-011789
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCC--------CEEEEEECCCCCCCCCCCCCHHHHHH
Q ss_conf 9999999998625894599999872699988899999999832545--------31667512778879886889899999
Q gi|254781120|r 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVT 336 (384)
Q Consensus 265 ~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~--------~~vNLIp~N~~~~~~~~~~~~~~i~~ 336 (384)
.+++..+... -+ +--+.+.=+.+.|+||. ++.+++++++.+. ---|-|||-=... ++. .+.=...+
T Consensus 243 kvle~aE~i~-~a-~idvlIaPv~lPG~ND~--E~~~iIe~A~~iGaGkk~p~lgiQkyipyk~GRk-p~~-~k~~~fke 316 (414)
T COG2100 243 KVLEVAEYIA-NA-GIDVLIAPVWLPGVNDD--EMPKIIEWAREIGAGKKWPPLGIQKYIPYKFGRK-PVI-AKVWPFKE 316 (414)
T ss_pred HHHHHHHHHH-HC-CCCEEEEEEECCCCCHH--HHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCC-CCC-CCCCCHHH
T ss_conf 9999999998-67-98889831442786817--7899999999848887799853077554020688-630-35575999
Q ss_pred HHHHHHH
Q ss_conf 9999998
Q gi|254781120|r 337 FSECIKR 343 (384)
Q Consensus 337 F~~~L~~ 343 (384)
|...|++
T Consensus 317 FYrwLre 323 (414)
T COG2100 317 FYRWLRE 323 (414)
T ss_pred HHHHHHH
T ss_conf 9999999
No 20
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A; InterPro: IPR013483 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , . In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 () of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) . This entry represents the bacterial form of MoaA (molybdenum cofactor biosynthesis protein A). The MoaA protein is a member of the wider S-adenosylmethionine(SAM)-dependent enzyme family which catalyze the formation of protein and/or substrate radicals by reductive cleavage of SAM via a [4Fe-4S] cluster. Monomeric and homodimeric forms of MoaA have been observed in vivo, and it is not clear what the physiologically relevant form of the enzyme is . The core of each monomer consists of an incomplete TIM barrel, formed by the N-terminal region of the protein, containing a [4Fe-4S] cluster. The C-terminal region of the protein, which also contains a [4Fe-4S] cluster consists of a beta-sheet covering the lateral opening of the barrel, an extended loop and three alpha helices. The N-terminal [4Fe-4S] cluster is coordinated with 3 cysteines and an exchangeable SAM molecule, while the C-terminal [4Fe-4S], also coordinated with 3 cysteines, is the binding and activation site for GTP .; GO: 0046872 metal ion binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=98.65 E-value=1.4e-06 Score=69.79 Aligned_cols=207 Identities=21% Similarity=0.343 Sum_probs=139.4
Q ss_pred EEECCCCHHCCCCCCCCC-----C-HHHC--CCCHHHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 884065100486132244-----1-1102--78989999999-9999972220344443434445458611014410145
Q gi|254781120|r 118 VSSQVGCSLTCSFCYTGT-----Q-KLVR--NLTAEEILLQV-LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 (384)
Q Consensus 118 vSSQvGC~m~C~FCaTg~-----~-G~~R--NLt~~EIv~Qv-~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmG 188 (384)
||====|.+.|.+|.-.. . -+.+ =||.+||..=+ .+++.-++ .-|+| =|
T Consensus 14 iSvTDRCNlRC~YCMP~~~FG~~~~f~~~~~~Lt~eEi~rl~~~~v~~Gv~----------------KvRlT------GG 71 (346)
T TIGR02666 14 ISVTDRCNLRCVYCMPEEGFGEGLDFLPKEELLTFEEIERLVRAFVGLGVR----------------KVRLT------GG 71 (346)
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCE----------------EEEEE------CC
T ss_conf 876164787246668865678876678755668989999999999974971----------------68752------77
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCC---C-CCEEEEEECCCCHHHHHHCCCCCCCCHH
Q ss_conf 44542899999960376845778775368885138741478860125---6-5179984045511344412331257899
Q gi|254781120|r 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI---G-VMLAISLHAVSNDLRNILVPINRKYPLE 264 (384)
Q Consensus 189 EPl~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~I~~la~~~---~-~~LAiSLha~~~~~R~~lmPi~~~~~l~ 264 (384)
|||+. .++...|+.+..-.|.. .+.|+++|-|+. +++.|+.+ + =.+=|||.|-+++.=.+|=- +.-.++
T Consensus 72 EPLlR-~~l~~lv~~~~~~~g~~--~~di~lTTNG~~--L~~~a~~L~eAGL~rvNvSLDsLd~~~F~~It~--~~~~l~ 144 (346)
T TIGR02666 72 EPLLR-KDLVELVARLAALPGIE--IEDIALTTNGLL--LERHAKDLKEAGLKRVNVSLDSLDPERFAKITR--RGGRLE 144 (346)
T ss_pred CCCCC-CCHHHHHHHHHHCCCCC--CCEEEECCCHHH--HHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHC--CCCCHH
T ss_conf 74413-67589999998427854--335541005223--588999999718880365401488899999857--899888
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCC-C-CCCCCHHHHHHHHHHHH
Q ss_conf 999999999862589459999987269998889999999983254531667512778879-8-86889899999999999
Q gi|254781120|r 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGC-E-YLCSDQKDIVTFSECIK 342 (384)
Q Consensus 265 ~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N~~~~~-~-~~~~~~~~i~~F~~~L~ 342 (384)
+++++++.=.+ .+=.+|=+.=|+++|+|| ++...|++|.+..++.|-.|-|=|+.+. . |+..+--..++..+.+.
T Consensus 145 ~Vl~Gi~aA~~-~Gl~~vKlN~V~~~G~Nd--~Ei~~l~~~~~~~~~~lRFIE~MP~G~~~~~~~~~~~~~~~~~l~~~~ 221 (346)
T TIGR02666 145 QVLAGIDAALE-AGLKPVKLNTVVLRGVND--DEIVDLAEFAKERGVTLRFIELMPLGEGGNGWRGKEFVSADEILERLE 221 (346)
T ss_pred HHHHHHHHHHH-CCCCCEEEEEEECCCCCH--HHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 99999999996-599831476676278897--789999999975796078875154676300000034535899999999
Q ss_pred HC-CCEEEECCCCCC
Q ss_conf 87-987854158777
Q gi|254781120|r 343 RS-GYSSPIRTPRGL 356 (384)
Q Consensus 343 ~~-Gi~~tiR~srG~ 356 (384)
+. |..-.+....|.
T Consensus 222 ~~~~~l~p~~~~~~~ 236 (346)
T TIGR02666 222 QAFGPLEPVPSPRGN 236 (346)
T ss_pred HHCCCCCCCCCCCCC
T ss_conf 743863445678888
No 21
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=98.64 E-value=8.7e-06 Score=63.88 Aligned_cols=282 Identities=17% Similarity=0.222 Sum_probs=157.5
Q ss_pred HHHHHHHHHCCCCCHHH---HCCCCHHHHHHHHH---CCCCCCC----CE---------EEEEE--CCCCCCCEEEECCC
Q ss_conf 99999998717999678---33478899999862---0225787----02---------34653--14544303775247
Q gi|254781120|r 36 SQIWKWIYVRGIRDFQG---MSDISQEVRHLLNQ---HFSIIYP----EI---------VDEKI--SCDGTRKWLLRFPA 94 (384)
Q Consensus 36 ~QI~~wiy~k~v~~f~~---MtnLpk~lR~~L~e---~~~i~~l----~i---------v~~~~--S~DGT~K~L~~l~d 94 (384)
-+-|.|-+++.+++.++ ..+++.+-++.++. .|.+..+ .. +.+|. +.+--.++--...|
T Consensus 13 ~~~w~~q~~~~i~~~~eL~~~~~l~~e~~e~~~~a~~~~~~ritpyy~~Lid~~np~dPirrQviP~~~El~~~~~~~~D 92 (369)
T COG1509 13 WEDWLWQLANAIRDPRELLEVLNLDEEELEGLERAAKLFALRITPYYLSLIDWGNPDDPIRRQVIPSEDELEKAPGESED 92 (369)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCHHHHHCCCCHHHHHHCCCCCCC
T ss_conf 02489999885178999998757997888889999851555588899975376789861776237988997514332468
Q ss_pred CCCCCCE--EEEEEECCCCCCCEEEEEECCCCHHCCCCCCCCCCHHHCC--CCHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 7778981--5544302346773389884065100486132244111027--89899999999999972220344443434
Q gi|254781120|r 95 RCIGGPV--EIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN--LTAEEILLQVLLARSLLGDFPGCEDIEGM 170 (384)
Q Consensus 95 ~~~~dg~--~IEsVlip~~~r~T~CvSSQvGC~m~C~FCaTg~~G~~RN--Lt~~EIv~Qv~~~~~~l~~~~~~~~~~~~ 170 (384)
.++++. .|..+.=+|++|.-+=++. +|++.|.||.--.+--..| ++..++-.++-.+++.
T Consensus 93 -pl~E~~~s~Vpgl~HrY~drvLll~t~--~C~vyCRyCfRr~~~~~~~~~~~~~~~~~al~YIa~h------------- 156 (369)
T COG1509 93 -PLGEDDSSPVPGLTHRYPDRVLLLVTG--VCAVYCRYCFRRRFVGQDNQGFNKEEWDKALDYIAAH------------- 156 (369)
T ss_pred -CCCCCCCCCCCCCEEECCCEEEEEECC--CCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCC-------------
T ss_conf -654556687887311058848999648--6645210001345556665667889999999999739-------------
Q ss_pred CCCCCCCCCCEEEEECCCCHHH----HHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCCCCCEEEEEECC
Q ss_conf 4454586110144101454454----289999996037684577877536888513874147886012565179984045
Q gi|254781120|r 171 VIPSVGRKISNIVMMGMGEPLC----NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 (384)
Q Consensus 171 ~~~~~~~~i~NiVfMGmGEPl~----N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~I~~la~~~~~~LAiSLha~ 246 (384)
..|.+|.|-| |.||. -++..++.++-+.+-+.+.|+.|-..|----|-+.+-.+..+....+.++.|.-
T Consensus 157 ------PeI~eVllSG-GDPL~ls~~~L~~ll~~L~~IpHv~iiRi~TR~pvv~P~RIt~~L~~~l~~~~~~v~~~tH~N 229 (369)
T COG1509 157 ------PEIREVLLSG-GDPLSLSDKKLEWLLKRLRAIPHVKIIRIGTRLPVVLPQRITDELCEILGKSRKPVWLVTHFN 229 (369)
T ss_pred ------CHHHEEEECC-CCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCEECHHHHCHHHHHHHHCCCCEEEEECCCC
T ss_conf ------5165177407-875636889999999987548964699862467431544406999998723586079980358
Q ss_pred CCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEC-CCCCCCC
Q ss_conf 511344412331257899999999999862589459999987269998889999999983254531667512-7788798
Q gi|254781120|r 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF-NPWPGCE 325 (384)
Q Consensus 247 ~~~~R~~lmPi~~~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~-N~~~~~~ 325 (384)
.. .+|- ++..+|+.... .. |-.+.=.=||++||||+++-..+|.+-|....++=--+-. -+++|..
T Consensus 230 Hp---~Eit--------~e~~~A~~~L~-~a-Gv~l~NQsVLLrGVND~~evl~~L~~~L~~~gV~PYYl~~~D~~~G~~ 296 (369)
T COG1509 230 HP---NEIT--------PEAREACAKLR-DA-GVPLLNQSVLLRGVNDDPEVLKELSRALFDAGVKPYYLHQLDLVQGAA 296 (369)
T ss_pred CH---HHCC--------HHHHHHHHHHH-HC-CCEEECCHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCC
T ss_conf 83---5468--------99999999999-75-956532410114667999999999999997488621785167667723
Q ss_pred -CCCCCHHHHHHHHHHHHH--CCC--EEEECCCC
Q ss_conf -868898999999999998--798--78541587
Q gi|254781120|r 326 -YLCSDQKDIVTFSECIKR--SGY--SSPIRTPR 354 (384)
Q Consensus 326 -~~~~~~~~i~~F~~~L~~--~Gi--~~tiR~sr 354 (384)
|+.|.. +-.+..+.|+. .|+ ++.++.--
T Consensus 297 hfr~~i~-~~~~i~~~lr~~~SG~~~P~~v~d~p 329 (369)
T COG1509 297 HFRVPIA-EGLQIVEELRGRTSGYAVPTLVVDIP 329 (369)
T ss_pred CEECCHH-HHHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 3514099-99999999997577766531578668
No 22
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family; InterPro: IPR012839 This subset of the radical-SAM domain includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centred radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4 from EC, IPR012838 from INTERPRO) and the anaerobic ribonucleotide reductase activating enzyme (IPR012837 from INTERPRO). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in Escherichia coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterisation and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain, which follows a conserved group of three cysteines and contains a variable pattern of 0 to 8 additional cysteines..
Probab=98.60 E-value=2.1e-06 Score=68.51 Aligned_cols=186 Identities=20% Similarity=0.426 Sum_probs=129.0
Q ss_pred CCCCCCHHHC-CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 3224411102-789899999999999972220344443434445458611014410145445428999999603768457
Q gi|254781120|r 131 CYTGTQKLVR-NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209 (384)
Q Consensus 131 CaTg~~G~~R-NLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl~N~d~v~~ai~~l~~~~g 209 (384)
|-|+-+.... ..|++||+.-|+.-+.+-+..+++ || |-| ||||.=-|-.+.-++-.. ..|
T Consensus 98 Cp~~Al~~~G~~~tV~ev~~~~~~D~~fY~~SGGG--------------vT---lSG-GEPl~Q~eF~~~LL~~c~-~~g 158 (305)
T TIGR02494 98 CPSGALEIVGKEMTVEEVMRVVLRDSIFYRNSGGG--------------VT---LSG-GEPLLQPEFALALLKACR-ERG 158 (305)
T ss_pred CCCHHHHEECCCCCHHHHHHHHHHHHHHHHHCCCE--------------EE---ECC-CCCCCCHHHHHHHHHHHH-HCC
T ss_conf 84006420245148899999998655666513990--------------67---348-711401589999999997-589
Q ss_pred CCCCCCEEEEEECCCCHH--HHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEE
Q ss_conf 787753688851387414--78860125651799840455113444123312578999999999998625-8-9459999
Q gi|254781120|r 210 LSFSKRRITLSTSGFVPN--IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS-N-ARRITFE 285 (384)
Q Consensus 210 ~~~~~r~ITvST~Gi~p~--I~~la~~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~y~~~~-~-~rrit~E 285 (384)
.. -+|=|||.+|. |.+++.....-| +=+=..+++.=.++.=+ +-+.+++=|+...+.. + |..|++=
T Consensus 159 ih-----TAvET~gft~~~~~~~~~~~~DLfL-~DiK~~D~~~H~~~tG~----~N~~IL~NL~~L~~~~~~GG~~v~iR 228 (305)
T TIGR02494 159 IH-----TAVETSGFTPWETIEKVLPYVDLFL-YDIKHLDDERHKEVTGV----DNELILENLEALLAAGKDGGKNVVIR 228 (305)
T ss_pred CC-----EEECCCCCCCHHHHHHHHHHHHHHH-HHHHHCCCHHHHHHCCC----CHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 94-----6760556888899998888776998-72641180120553389----83789999999997178899558998
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCC-C---CEEEEEECCCC-------------CCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 987269998889999999983254-5---31667512778-------------879886889899999999999879
Q gi|254781120|r 286 YVMLKGINDSPRDALNLIKILKGI-P---AKINLIPFNPW-------------PGCEYLCSDQKDIVTFSECIKRSG 345 (384)
Q Consensus 286 Yvli~gvNDs~e~a~~L~~ll~~~-~---~~vNLIp~N~~-------------~~~~~~~~~~~~i~~F~~~L~~~G 345 (384)
-=+|+|+|||.++..++++|++.. + ..|+|+||+.. +.++-..++++.++++.+++.+.|
T Consensus 229 ~PvIpG~Nds~~~i~a~~~f~~~~~~~N~~~i~LLPyH~lG~~KY~~LG~~~~~~~~~~~~~~e~~~~l~~~~~~~G 305 (305)
T TIGR02494 229 IPVIPGFNDSEENIEAIAEFLRKLLPGNVKEIDLLPYHRLGENKYRQLGREYYPDSEIPDPAEEQLLELKEIFEKKG 305 (305)
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 72048989898999999999998517897656744860556799985588677788888866678999999999629
No 23
>PRK07094 biotin synthase; Provisional
Probab=98.38 E-value=9e-05 Score=56.38 Aligned_cols=207 Identities=20% Similarity=0.250 Sum_probs=120.3
Q ss_pred CCCHHCCCCCCCCC--CHHHC-CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCC-HHHHHHHH
Q ss_conf 65100486132244--11102-7898999999999999722203444434344454586110144101454-45428999
Q gi|254781120|r 122 VGCSLTCSFCYTGT--QKLVR-NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE-PLCNFDNV 197 (384)
Q Consensus 122 vGC~m~C~FCaTg~--~G~~R-NLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGE-Pl~N~d~v 197 (384)
-.|+-+|.||+--+ .+..| .|+.+||+++...+.+. | ++.+|+. .|| |-...|.+
T Consensus 47 n~C~edC~yC~~~~~n~~~~rY~Ls~eeI~~~A~~a~~~------------------G--~~~~~lq-sG~~~~~~~e~~ 105 (323)
T PRK07094 47 NYCRRNCLYCGLRRSNKNIKRYRLSPEEILECAKKAYEL------------------G--YGTIVLQ-SGEDPYYTDEKI 105 (323)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC------------------C--CCEEEEE-CCCCCCCCHHHH
T ss_conf 899999934787667899774379999999999999986------------------9--9889996-489988669999
Q ss_pred HHHHHCCCCCCCCCCCCCEEEEEECCCCH--HHHHHHCC-C-CCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 99960376845778775368885138741--47886012-5-65179984045511344412331257899999999999
Q gi|254781120|r 198 KKSLSIASDSMGLSFSKRRITLSTSGFVP--NIARVGEE-I-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY 273 (384)
Q Consensus 198 ~~ai~~l~~~~g~~~~~r~ITvST~Gi~p--~I~~la~~-~-~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~y 273 (384)
...++.+...-++ .||+| .|..+ ..++|.+- . .++ ..+-.++++...+|-|- ++.++=++.++.-
T Consensus 106 ~~ii~~Ik~~~~l-----~i~lS-lG~l~~e~~~~Lk~AG~dry~--~nlETs~~~~y~~i~p~---~t~~~Rl~~l~~~ 174 (323)
T PRK07094 106 ADIIKEIKKELDV-----AITLS-LGERSYEEYKAWKEAGADRYL--LRHETADRELYEKLHPG---MSFENRIQCLKDL 174 (323)
T ss_pred HHHHHHHHHCCCC-----EEEEE-CCCCCHHHHHHHHHCCCCEEE--CCCCCCCHHHHCCCCCC---CCHHHHHHHHHHH
T ss_conf 9999998605994-----59975-787999999999985977441--24565698986775899---9989999999999
Q ss_pred HHHCCCCEEEEEEEEECCC-CCCHHHHHHHHHHHCCCCCE-EEEEECCCCCCCCCCCC---CHHHHHHHHHHHHHCCCEE
Q ss_conf 8625894599999872699-98889999999983254531-66751277887988688---9899999999999879878
Q gi|254781120|r 274 PGLSNARRITFEYVMLKGI-NDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEYLCS---DQKDIVTFSECIKRSGYSS 348 (384)
Q Consensus 274 ~~~~~~rrit~EYvli~gv-NDs~e~a~~L~~ll~~~~~~-vNLIp~N~~~~~~~~~~---~~~~i~~F~~~L~~~Gi~~ 348 (384)
. .. |-.++= -.|=|+ .-+.+|--.++-+++.+... |-+=||+|++|.|+... +.+.......+++=.-=.+
T Consensus 175 k-~~-G~~v~s--G~iiGlpGET~edr~~~l~~LreL~~~~v~i~~fiP~~gTPl~~~~~~~~~~~lr~iAl~Rli~P~a 250 (323)
T PRK07094 175 K-EL-GYEVGS--GFMVGLPGQTLEDLADDILFLKELDLDMIGIGPFIPHPDTPLADEKGGSLELTLKVLALARLLLPDA 250 (323)
T ss_pred H-HC-CCCCCC--EEEECCCCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9-83-981043--0277989999999999999998379988677255179999988999979999999999999978766
Q ss_pred EECCCCCCCCCCCCCC
Q ss_conf 5415877710011200
Q gi|254781120|r 349 PIRTPRGLDILAACGQ 364 (384)
Q Consensus 349 tiR~srG~DI~aACGQ 364 (384)
.|+-+-+..-.+.-||
T Consensus 251 ~Ipattal~~l~~~g~ 266 (323)
T PRK07094 251 NIPATTALGTLNPDGR 266 (323)
T ss_pred CCCCCCCHHHCCHHHH
T ss_conf 5744465322498899
No 24
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=98.31 E-value=5.4e-05 Score=58.05 Aligned_cols=177 Identities=16% Similarity=0.287 Sum_probs=98.6
Q ss_pred EEEEEECCCCHHCCCCCCCCCCHHHC-----CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 38988406510048613224411102-----7898999999999999722203444434344454586110144101454
Q gi|254781120|r 115 TLCVSSQVGCSLTCSFCYTGTQKLVR-----NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 (384)
Q Consensus 115 T~CvSSQvGC~m~C~FCaTg~~G~~R-----NLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGE 189 (384)
++.+-.--+|.++|+.|.-...+=.| .+...|.++-++ +..+.. ....+ +|+|-| ||
T Consensus 6 ~iv~~~T~~CNL~C~YCy~~~~~~~~~~~~~~~~~~e~~~~~i--~~~~~~--------------~~~~~-~i~f~G-GE 67 (370)
T PRK13758 6 LLIKPASSGCNLKCTYCFYHSLSDNRNVKSYGIMRDEVLESMV--KRVLNE--------------AEGHC-SFAFQG-GE 67 (370)
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH--HHHHHC--------------CCCCE-EEEEEC-CC
T ss_conf 9966687884889976688376886666664548299999999--999863--------------68953-899977-22
Q ss_pred HHH-HHHHHHHHHHCCCC--CCCCCCCCCEEEEEECCCC--HHHHHHHCCCCCCEEEEEECCCCHHHHHHCC-CCCCCCH
Q ss_conf 454-28999999603768--4577877536888513874--1478860125651799840455113444123-3125789
Q gi|254781120|r 190 PLC-NFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVP-INRKYPL 263 (384)
Q Consensus 190 Pl~-N~d~v~~ai~~l~~--~~g~~~~~r~ITvST~Gi~--p~I~~la~~~~~~LAiSLha~~~~~R~~lmP-i~~~~~l 263 (384)
||+ +++-+...++.... ..+..+ ..++.|-|.. +.+-++..+..+.+.|||-.|. ++-++.=| .+.+-+.
T Consensus 68 PLL~~~~~~~~~~~~~~~~~~~~~~i---~~~i~TNGtLL~~e~~~~l~~~~~~I~ISlDG~~-~~HD~~R~~~~G~Gsf 143 (370)
T PRK13758 68 PTLAGLEFFEELMELQRKHNYKNLKI---YNSLQTNGTLIDESWAKFLSENKFLVGLSMDGPK-EIHNLNRKDCCGLDTF 143 (370)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCEE---EEEEEECCEECCHHHHHHHHHCCEEEEEECCCCH-HHHHHHCCCCCCCCHH
T ss_conf 20698369999999999855689769---9998518876689999999976948999646888-8874006888997059
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCC-EEEEEEC
Q ss_conf 999999999986258945999998726999888999999998325453-1667512
Q gi|254781120|r 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPF 318 (384)
Q Consensus 264 ~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~-~vNLIp~ 318 (384)
+.++++++...+ . +-.+.+-.++-++ +.++..++.++++.+.. .+.++|.
T Consensus 144 ~~v~~~i~~l~~-~-~~~~~i~~~i~~~---~~~~~~~i~~~~~~~g~~~~~~~~~ 194 (370)
T PRK13758 144 SKVERAAELFKK-Y-KVEFNILCVVTSN---TARHVNKIYKYFKEKDFKFLQFINC 194 (370)
T ss_pred HHHHHHHHHHHH-C-CCCEEEEEEEECC---CCCCHHHHHHHHHHCCCCEEEEEEC
T ss_conf 999999999997-3-9970089999187---3118999999999769985888842
No 25
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=98.31 E-value=3.9e-05 Score=59.10 Aligned_cols=195 Identities=15% Similarity=0.171 Sum_probs=114.0
Q ss_pred CEEEEEECCCCHHCCCCCCCCCCHHHCCCCHHHHHHHHHHH-HHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHH
Q ss_conf 33898840651004861322441110278989999999999-99722203444434344454586110144101454454
Q gi|254781120|r 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLA-RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192 (384)
Q Consensus 114 ~T~CvSSQvGC~m~C~FCaTg~~G~~RNLt~~EIv~Qv~~~-~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl~ 192 (384)
....|-+.=||+-||.||..+.....|.-....+++++... ++...... -++--+|..=+.. .
T Consensus 198 ~~~~ve~~RGCp~~C~FC~~~~~~~~r~~~~~~v~~ei~~~~~~~~~~~~---------------~~~~~~f~~~~~~-~ 261 (490)
T COG1032 198 RAFSVETSRGCPRGCRFCSITKHFKYRRRRPERVVEEIKELIEEGGKRVV---------------FFVDDIFLYGSPA-L 261 (490)
T ss_pred CEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC---------------EECCCEEECCCCC-C
T ss_conf 26999997888889988888611460057889999999999998732145---------------0235577447854-3
Q ss_pred HHHHHHHHHH-CCCCCCCCCCCCCEEEEE--ECCCC--HHHHHHHCCC-CCCEEEEEECCCCHHHHHHCCCCCCCCHHHH
Q ss_conf 2899999960-376845778775368885--13874--1478860125-6517998404551134441233125789999
Q gi|254781120|r 193 NFDNVKKSLS-IASDSMGLSFSKRRITLS--TSGFV--PNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEML 266 (384)
Q Consensus 193 N~d~v~~ai~-~l~~~~g~~~~~r~ITvS--T~Gi~--p~I~~la~~~-~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l 266 (384)
|.+...+.+. .+.....-+...-+++++ ..-.+ ..+.++..+. ...+.+-+.+.++++++.++ |.+..+++
T Consensus 262 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~g~~~~~iG~Esgs~~~l~~~~---k~~~~~~~ 338 (490)
T COG1032 262 NDEKRFELLSLELIERGLRKGCRVHISAPSLRADTVTDEELLKLLREAGLRRVYIGIESGSEELLKKIN---KGITTEEV 338 (490)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHH---CCCCHHHH
T ss_conf 416788887999998630467603575230033437879999998764943699965899999999861---47886888
Q ss_pred HH-HHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHH---HHHHHCCCCCE--EEEEECCCCCCCCCCCCC
Q ss_conf 99-999998625894599999872699988899999---99983254531--667512778879886889
Q gi|254781120|r 267 ID-ACRHYPGLSNARRITFEYVMLKGINDSPRDALN---LIKILKGIPAK--INLIPFNPWPGCEYLCSD 330 (384)
Q Consensus 267 ~~-a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~---L~~ll~~~~~~--vNLIp~N~~~~~~~~~~~ 330 (384)
++ |.+--.. . +-++..-+++--+ -.+.+|.++ ++++++.+..+ +...+|-|.|++++....
T Consensus 339 ~~~a~~~~~~-~-~~~~~~~~i~G~p-get~ed~~~t~~~~~~~~~~~~~~~~~~~~~~p~p~t~~~~~~ 405 (490)
T COG1032 339 LEEAVKIAKE-H-GLRVKLYFIVGLP-GETEEDVKETIELAKFIKKLGPKLYVSPSPFVPLPGTPLQEMP 405 (490)
T ss_pred HHHHHHHHHH-C-CCCCEEEEEECCC-CCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHCC
T ss_conf 9999999986-7-9861799998279-9997999999999999987186745887641646988413224
No 26
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=98.25 E-value=3e-05 Score=59.90 Aligned_cols=206 Identities=17% Similarity=0.257 Sum_probs=116.0
Q ss_pred CCCCEEEEEECCCCHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCH
Q ss_conf 67733898840651004861322441110278989999999999997222034444343444545861101441014544
Q gi|254781120|r 111 KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 (384)
Q Consensus 111 ~~r~T~CvSSQvGC~m~C~FCaTg~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEP 190 (384)
+....=|+-+++| |.||.-...-..---..-+++.|.+. +.+ +- ..+ .+..+.-||=|.+
T Consensus 31 ~~~~~~c~~~~~~----C~~cy~~v~~~~~~~~~~~~v~~e~~--~~l----g~-------~~e---~~~~~~~~~~~d~ 90 (414)
T COG1625 31 GFGCKDCIPYRFG----CDDCYLSVNELDTGFIPPLMVEKEPD--EDL----GL-------EFE---EVLGAKQCGNGDT 90 (414)
T ss_pred CCCCCCCCCCCCC----CCCEEEEEECCCCCCCCHHHHHCCCC--CCC----CC-------CCC---CCCCEEECCCCCC
T ss_conf 7788768776435----02100588515677788767423534--332----43-------300---0112011279986
Q ss_pred HHH--HHHHHHHHHCCC-CCCCCCCCCCEEEEEECCCC--HHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCHHH
Q ss_conf 542--899999960376-84577877536888513874--1478860125651799840455113444123312578999
Q gi|254781120|r 191 LCN--FDNVKKSLSIAS-DSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEM 265 (384)
Q Consensus 191 l~N--~d~v~~ai~~l~-~~~g~~~~~r~ITvST~Gi~--p~I~~la~~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~ 265 (384)
+-- .....+..+.+. ++ -+.+| -.|++|+- ...+++.+.-=--+.+|+||+++++|.++|- .-.-++
T Consensus 91 ~c~p~le~~~~r~~~~~~d~-~~rL~----~tsG~~~~lt~~~~~i~~~gvdev~~SVhtT~p~lR~klm~---n~~A~~ 162 (414)
T COG1625 91 FCYPDLEPRGRRARLYYKDD-DIRLS----FTSGSGFTLTNRAERIIDAGVDEVYFSVHTTNPELRAKLMK---NPNAEQ 162 (414)
T ss_pred CCCCCHHHHHHHHHHHCCCC-CCEEE----EEECCCEECCCHHHHHHHCCCCEEEEEEEECCHHHHHHHHC---CCCHHH
T ss_conf 65731112666787615884-40356----53126301542689999769980699996089899999863---986778
Q ss_pred HHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHC----CCC----CEEEEEECCCCCCCCCCCCCHHHHHHH
Q ss_conf 999999998625894599999872699988899999999832----545----316675127788798868898999999
Q gi|254781120|r 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK----GIP----AKINLIPFNPWPGCEYLCSDQKDIVTF 337 (384)
Q Consensus 266 l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~----~~~----~~vNLIp~N~~~~~~~~~~~~~~i~~F 337 (384)
+++.++.+.. . .-.|--.-||+.|+||..+--+-+..|-. ... +.|-||.||+- ..+++..+.+..|
T Consensus 163 ~le~L~~f~~-~-~~~v~a~iVl~PGvNdge~L~kT~~dL~~~g~~~~~~~~~~pvGlt~~n~~---~i~~~t~~~l~~~ 237 (414)
T COG1625 163 LLELLRRFAE-R-CIEVHAQIVLCPGVNDGEELEKTLEDLEEWGAHEVILMRVVPVGLTRYNRP---GIRPPTPHELEEF 237 (414)
T ss_pred HHHHHHHHHH-H-HHHEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCEEEECCCC---CCCCCCHHHHHHH
T ss_conf 9999999997-5-311356799857857577799999999972867336898631211523777---7787787899999
Q ss_pred HHHHH----HCC-CEEE
Q ss_conf 99999----879-8785
Q gi|254781120|r 338 SECIK----RSG-YSSP 349 (384)
Q Consensus 338 ~~~L~----~~G-i~~t 349 (384)
..+.+ ..| +.++
T Consensus 238 k~i~re~~~E~~~~~V~ 254 (414)
T COG1625 238 KEIVREFDRELGSIRVT 254 (414)
T ss_pred HHHHHHHHHHCCCEEEE
T ss_conf 99999999753866983
No 27
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=98.22 E-value=0.00016 Score=54.45 Aligned_cols=191 Identities=15% Similarity=0.216 Sum_probs=128.4
Q ss_pred EEEEECCCCHHCCCCCCCCC-C-H-HHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHH
Q ss_conf 89884065100486132244-1-1-1027898999999999999722203444434344454586110144101454454
Q gi|254781120|r 116 LCVSSQVGCSLTCSFCYTGT-Q-K-LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192 (384)
Q Consensus 116 ~CvSSQvGC~m~C~FCaTg~-~-G-~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl~ 192 (384)
+=+.|-=||+.+|.||+.-+ . | -.|.=++..+++++-.+.+... .|.++.|. =..+..
T Consensus 198 ~~i~TSRGCP~~C~FC~~p~~~~Gr~~R~RSpe~VvdEIe~l~~~y~------------------gv~~~~f~-DD~Ft~ 258 (472)
T TIGR03471 198 ISLYTGRGCPSKCTFCLWPQTVGGHRYRTRSAESVIEEVKYALENFP------------------EVREFFFD-DDTFTD 258 (472)
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC------------------CCCEEEEE-CCCCCC
T ss_conf 47641799887796878821026886621599999999999998668------------------97589994-776678
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCC-EEEEEECCCCHHHHHHHCCCC-CCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 28999999603768457787753-688851387414788601256-5179984045511344412331257899999999
Q gi|254781120|r 193 NFDNVKKSLSIASDSMGLSFSKR-RITLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 (384)
Q Consensus 193 N~d~v~~ai~~l~~~~g~~~~~r-~ITvST~Gi~p~I~~la~~~~-~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~ 270 (384)
|-+.+....+.|. +.++.++.. |++ +-..+-++..+.+ ..+.+-+-|.+|+..+.+ +|...+++..+++
T Consensus 259 ~~~r~~eic~~i~-~l~i~W~~~~Rv~-----~d~E~l~~mk~AGc~~v~~GiESgsq~iL~~i---~K~~t~e~~~~av 329 (472)
T TIGR03471 259 DKPRAEEIARKLG-PLGVTWSCNARAN-----VDYETLKVMKENGLRLLLVGYESGDQQILKNI---KKGLTVEIARRFT 329 (472)
T ss_pred CHHHHHHHHHHHH-HCCCEEEEEEECC-----CCHHHHHHHHHHCCEEEEEECCCCCHHHHHHH---CCCCCHHHHHHHH
T ss_conf 9999999999998-7698278763034-----89999999998398489980375899999985---3899899999999
Q ss_pred HHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCC-CEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf 9998625894599999872699988899999999832545-31667512778879886889899999999999879878
Q gi|254781120|r 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSS 348 (384)
Q Consensus 271 ~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~-~~vNLIp~N~~~~~~~~~~~~~~i~~F~~~L~~~Gi~~ 348 (384)
+.. +.. | -.+.-+.++.-=+++.|++++-.++++.++ -.+|.-.+.|.||++ +.+.++++|...
T Consensus 330 ~~~-k~~-G-I~v~~~FIiG~PgET~Eti~~Ti~fa~~l~~d~~~~si~tPyPGT~-----------ly~~~~e~g~i~ 394 (472)
T TIGR03471 330 RDC-HKL-G-IKVHGTFILGLPGETRETIRKTIDFAKELNPHTIQVSLAAPYPGTE-----------LYDQAKQNGWIT 394 (472)
T ss_pred HHH-HHC-C-CEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCH-----------HHHHHHHCCCCC
T ss_conf 988-757-9-8799999877999988999999999997598908998725889969-----------999999839855
No 28
>PRK06256 biotin synthase; Validated
Probab=98.19 E-value=0.00076 Score=49.51 Aligned_cols=209 Identities=20% Similarity=0.233 Sum_probs=126.4
Q ss_pred EEECCCCHHCCCCCCCC---CCHHHC-C-CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCC--H
Q ss_conf 88406510048613224---411102-7-898999999999999722203444434344454586110144101454--4
Q gi|254781120|r 118 VSSQVGCSLTCSFCYTG---TQKLVR-N-LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE--P 190 (384)
Q Consensus 118 vSSQvGC~m~C~FCaTg---~~G~~R-N-Lt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGE--P 190 (384)
+|| =.|+-+|.||+=. +.+..| . |+..||+++...+... -++.+++..-|+ +
T Consensus 62 ~kn-g~C~edC~yCaqs~~~~~~~~~y~ll~~eeI~~~a~~a~~~--------------------G~~~~~lvtsg~~~~ 120 (325)
T PRK06256 62 LKS-GLCPEDCGYCSQSAGSSSPIYRYAWLDIEEIVEAAKEAIEN--------------------GAGRFCIVASGRGPS 120 (325)
T ss_pred ECC-CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC--------------------CCCEEEEEEECCCCC
T ss_conf 618-98899996298907678997412789999999999999986--------------------998899986045897
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCH--HHHHHHCCCCCC-EEEEEECCCCHHHHHHCCCCCCCCHHHHH
Q ss_conf 542899999960376845778775368885138741--478860125651-79984045511344412331257899999
Q gi|254781120|r 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP--NIARVGEEIGVM-LAISLHAVSNDLRNILVPINRKYPLEMLI 267 (384)
Q Consensus 191 l~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p--~I~~la~~~~~~-LAiSLha~~~~~R~~lmPi~~~~~l~~l~ 267 (384)
-..++.+..+++.+.+..++ .|++| .|... ..++|.+- ++. ....|- +..+...+|.| .++.++=+
T Consensus 121 ~~~~e~v~~~i~~Ik~~~~l-----~i~~s-lG~l~~e~~~~LkeA-Gvd~y~~nlE-Ts~~~f~~i~~---tht~~~Rl 189 (325)
T PRK06256 121 GREVDQVIEAVKAIKEETDL-----EICAC-LGLLTEEQAERLKEA-GVDRYNHNLE-TSRSYFPNVVT---THTYEDRV 189 (325)
T ss_pred HHHHHHHHHHHHHHHHCCCE-----EEEEE-CCCCCHHHHHHHHHC-CCCEECCCCC-CCHHHCCCCCC---CCCHHHHH
T ss_conf 67899999999998622893-----68873-488999999999986-9988866644-06876388689---98899999
Q ss_pred HHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEC---CCCCCCCCCC---CCHHHHHHHHHHH
Q ss_conf 999999862589459999987269998889999999983254531667512---7788798868---8989999999999
Q gi|254781120|r 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF---NPWPGCEYLC---SDQKDIVTFSECI 341 (384)
Q Consensus 268 ~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~---N~~~~~~~~~---~~~~~i~~F~~~L 341 (384)
+.++.-. .. |-.+.- -+|=|+.++.+|--+++-.++.+.. .-||+ ||++|.|+.. .+.+...+...++
T Consensus 190 ~ti~~a~-~a-Gi~vcs--G~i~GlGEt~edrve~l~~Lr~l~~--~sipin~l~P~~gTpl~~~~~l~~~e~lr~iAi~ 263 (325)
T PRK06256 190 DTCEMVK-AA-GIEPCS--GGIIGMGETLEDRAEHAFFLKELDA--DSIPINFLNPIKGTPLEDLPELTPLECLKTIAIF 263 (325)
T ss_pred HHHHHHH-HC-CCCCCC--CEEECCCCCHHHHHHHHHHHHCCCC--CEEECCCCEECCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 9999999-85-996466--4376689998999999999971999--8895467010699866889998999999999999
Q ss_pred HHCCCEEEECCCCCCCCCCCCCC
Q ss_conf 98798785415877710011200
Q gi|254781120|r 342 KRSGYSSPIRTPRGLDILAACGQ 364 (384)
Q Consensus 342 ~~~Gi~~tiR~srG~DI~aACGQ 364 (384)
+-.-=.+.||-+-|+.+.-.-+|
T Consensus 264 Rl~~P~~~Ir~agGr~~~~~~~~ 286 (325)
T PRK06256 264 RLINPDKEIRIAGGREIALRSLQ 286 (325)
T ss_pred HHHCCCCEEEEECCCCCCCHHHH
T ss_conf 99789954897078552255679
No 29
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=98.14 E-value=0.00035 Score=52.01 Aligned_cols=177 Identities=20% Similarity=0.309 Sum_probs=112.6
Q ss_pred CCEEEEEECCCCHHCCCCCCCCCCH-HHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHH
Q ss_conf 7338988406510048613224411-102789899999999999972220344443434445458611014410145445
Q gi|254781120|r 113 RGTLCVSSQVGCSLTCSFCYTGTQK-LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191 (384)
Q Consensus 113 r~T~CvSSQvGC~m~C~FCaTg~~G-~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl 191 (384)
...+=+..---|.+.|.||...... ...-|++.|+..++..+.. .+. ..+|.-+=||||
T Consensus 18 p~~~~~~~t~~Cnl~C~~C~~~~~~~~~~el~~~~~~~~~~~~~~------------------~g~--~~~v~~~gGEPl 77 (347)
T COG0535 18 PLVVGIELTNRCNLACKHCYAEAGKKLPGELSTEEDLRVIDELAE------------------LGE--IPVVIFTGGEPL 77 (347)
T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH------------------CCC--EEEEEECCCCCE
T ss_conf 737998558876874998772426776773568787899999987------------------188--449980798733
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCC--H-HHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHH
Q ss_conf 4289999996037684577877536888513874--1-478860125651799840455113444123312578999999
Q gi|254781120|r 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--P-NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 (384)
Q Consensus 192 ~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~--p-~I~~la~~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~ 268 (384)
++ ..+...++...+..+ -+.++||.|.. . -++++++..-..+.||+.+...+.-+.+.-. +-.++..++
T Consensus 78 l~-~~~~ei~~~~~~~~~-----~~~~~~TnG~~~~~~~~~~l~~~g~~~v~iSld~~~~e~hd~~rg~--~g~~~~~~~ 149 (347)
T COG0535 78 LR-PDLLEIVEYARKKGG-----IRVSLSTNGTLLTEEVLEKLKEAGLDYVSISLDGLDPETHDPIRGV--KGVFKRAVE 149 (347)
T ss_pred EC-CCHHHHHHHHHHCCC-----EEEEEECCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCC--CCHHHHHHH
T ss_conf 34-579999999851387-----2898826875453889998876688769999745885321400277--626999999
Q ss_pred HHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCC-CEEEEEECCCCC
Q ss_conf 999998625894599999872699988899999999832545-316675127788
Q gi|254781120|r 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP-AKINLIPFNPWP 322 (384)
Q Consensus 269 a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~-~~vNLIp~N~~~ 322 (384)
+++.... . +-.+.. -+.+.+.| .++..+++++++.+. ..+++.++.+..
T Consensus 150 ~i~~~~~-~-g~~~~~-~~~v~~~n--~~~l~~~~~~~~~~g~~~~~~~~~~~~g 199 (347)
T COG0535 150 AIKNLKE-A-GILVVI-NTTVTKIN--YDELPEIADLAAELGVDELNVFPLIPVG 199 (347)
T ss_pred HHHHHHH-H-CCEEEE-EEEEECCC--HHHHHHHHHHHHHCCCCCEEEEEEEECC
T ss_conf 9999987-3-970489-99995663--4658999999986597605767644314
No 30
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB; InterPro: IPR005980 NifB is a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack most of the C-terminal region and are excluded from this model.; GO: 0009108 coenzyme biosynthetic process, 0009399 nitrogen fixation.
Probab=98.13 E-value=0.00023 Score=53.39 Aligned_cols=203 Identities=20% Similarity=0.376 Sum_probs=147.4
Q ss_pred CCCHHCCCCCCC-------CCCHHH-CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHH
Q ss_conf 651004861322-------441110-278989999999999997222034444343444545861101441014544542
Q gi|254781120|r 122 VGCSLTCSFCYT-------GTQKLV-RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 (384)
Q Consensus 122 vGC~m~C~FCaT-------g~~G~~-RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl~N 193 (384)
-+|.+-|-||-= -+=|-. --||++.=+..+-.+...+. .++=|=.-|=|.||.|
T Consensus 32 pACNiQCNYCNRKyDC~NESRPGV~S~~LtP~qA~~k~~~VA~~i~------------------QLSVvGIAGPGDpLan 93 (461)
T TIGR01290 32 PACNIQCNYCNRKYDCANESRPGVVSELLTPEQALAKVKAVAAEIP------------------QLSVVGIAGPGDPLAN 93 (461)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC------------------CCEEEEECCCCCCCCC
T ss_conf 4334554556864166788887620134684899999999985067------------------5315632578862457
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCEEEEEECCCC--HHHHHHHCCCCCCEEEEEECCCCHHHHHHCC----CCCCCCHHHHH
Q ss_conf 89999996037684577877536888513874--1478860125651799840455113444123----31257899999
Q gi|254781120|r 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVP----INRKYPLEMLI 267 (384)
Q Consensus 194 ~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~--p~I~~la~~~~~~LAiSLha~~~~~R~~lmP----i~~~~~l~~l~ 267 (384)
.+..++.+..+.- .+.==+.=+||-|+. .-|+|++|--==+..|-+|+-|++.=++|-| -.++|.=-+=-
T Consensus 94 ~~~Tf~Tl~~v~~----~~PDvklCLSTNGL~LP~~vDrlvdlgvdHVTiTiN~iDP~vG~~IYpWv~y~G~RY~Gr~Aa 169 (461)
T TIGR01290 94 IKKTFQTLELVAR----EVPDVKLCLSTNGLALPEHVDRLVDLGVDHVTITINAIDPEVGEKIYPWVAYEGKRYTGREAA 169 (461)
T ss_pred CCCCHHHHHHHHH----HCCCEEEECCCCCCCCHHHHHHHHHCCCCCEEEEECCCCHHHHCEECCCEEECCCCCCHHHHH
T ss_conf 5000899999985----178214200126563134652464238881798831406355103065233267333548999
Q ss_pred HHHHH-----HHHHCCCCE--EEEEEEEECCCCCCHHHHHHHHHHHCCCCCE-EEEEECCCCC--CC-----CCCCCCHH
Q ss_conf 99999-----986258945--9999987269998889999999983254531-6675127788--79-----88688989
Q gi|254781120|r 268 DACRH-----YPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWP--GC-----EYLCSDQK 332 (384)
Q Consensus 268 ~a~~~-----y~~~~~~rr--it~EYvli~gvNDs~e~a~~L~~ll~~~~~~-vNLIp~N~~~--~~-----~~~~~~~~ 332 (384)
+-|-+ .-.++ .|. +=+.=|||.|||| +|.-+..+.+|++.+- =|..|.=.-| |+ +-+.|...
T Consensus 170 ~lL~erQl~G~~~L~-ergiL~KvNSvlIPGiND--~HL~eVsk~vk~~GAfLHNvmPLis~PeHGt~ygl~Gq~~P~~~ 246 (461)
T TIGR01290 170 KLLIERQLEGLEKLT-ERGILVKVNSVLIPGIND--EHLVEVSKKVKELGAFLHNVMPLISAPEHGTVYGLNGQRAPAPS 246 (461)
T ss_pred HHHHHHHHHHHHHHH-HCCCEEEECCEECCCCCC--HHHHHHHHHHHCCCCHHCCCCCCEECCCCCCCCCCCCCCCCCHH
T ss_conf 998999999999997-388548880064389881--78999877751046400054421014898831167878888989
Q ss_pred HHHHHHHHHHHC-CCEEE
Q ss_conf 999999999987-98785
Q gi|254781120|r 333 DIVTFSECIKRS-GYSSP 349 (384)
Q Consensus 333 ~i~~F~~~L~~~-Gi~~t 349 (384)
.+.+.++.|... |..+.
T Consensus 247 el~~l~~~l~~~~Gae~~ 264 (461)
T TIGR01290 247 ELKALRDRLEEGDGAETK 264 (461)
T ss_pred HHHHHHHHHCCCCCCCCC
T ss_conf 999999970788875565
No 31
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=98.09 E-value=0.00019 Score=53.91 Aligned_cols=168 Identities=19% Similarity=0.275 Sum_probs=108.6
Q ss_pred CHHCCCCCCCCCCHH----HCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHH
Q ss_conf 100486132244111----0278989999999999997222034444343444545861101441014544542899999
Q gi|254781120|r 124 CSLTCSFCYTGTQKL----VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199 (384)
Q Consensus 124 C~m~C~FCaTg~~G~----~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl~N~d~v~~ 199 (384)
|.++|..|.--.-.- .-.-+..+++++++... ...+| .|.|-| ||||++.+.+.+
T Consensus 18 CNL~C~YC~~~~~~~~~~~Ms~etle~~i~~~~~~~-------------------~~~~v-~~~w~G-GEPlL~~~~f~~ 76 (378)
T COG0641 18 CNLDCKYCFYLEKESLQRIMSDETLEEYVRQYIAAS-------------------NGDKV-TFTWQG-GEPLLAGLDFYR 76 (378)
T ss_pred CCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHCC-------------------CCCEE-EEEEEC-CCCCCCHHHHHH
T ss_conf 699888507617777778789999999999999608-------------------98747-999978-864034087999
Q ss_pred HHHCCCCCCCCCCCCCEEE--EEECCCC--HHHHHHHCCCCCCEEEEEECCCCHHHHHHCC-CCCCCCHHHHHHHHHHHH
Q ss_conf 9603768457787753688--8513874--1478860125651799840455113444123-312578999999999998
Q gi|254781120|r 200 SLSIASDSMGLSFSKRRIT--LSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVP-INRKYPLEMLIDACRHYP 274 (384)
Q Consensus 200 ai~~l~~~~g~~~~~r~IT--vST~Gi~--p~I~~la~~~~~~LAiSLha~~~~~R~~lmP-i~~~~~l~~l~~a~~~y~ 274 (384)
.+..+..... - .+.|+ +.|-|+. +.+-++..+.++..-|||-.| .|+-++.=| .|.+=+.+.++++++...
T Consensus 77 ~~~~l~~k~~--~-~~~i~~siqTNg~LL~~e~~e~l~~~~~~IgISiDGp-~eihD~~R~~~~GkgTfd~i~~~i~~L~ 152 (378)
T COG0641 77 KAVALQQKYA--N-GKTISNALQTNGTLLNDEWAEFLAEHDFLIGISIDGP-EEIHDKYRVTKSGKGTFDRVMKGLELLQ 152 (378)
T ss_pred HHHHHHHHHC--C-CCCEEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCC-HHHHCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 9999999860--5-8825789987603257999999985296699966681-7761110357899856999999999999
Q ss_pred HHCCCCEEEEEEEEECCCC-CCHHHHHHHHHHHCCCC-CEEEEEECCCCC
Q ss_conf 6258945999998726999-88899999999832545-316675127788
Q gi|254781120|r 275 GLSNARRITFEYVMLKGIN-DSPRDALNLIKILKGIP-AKINLIPFNPWP 322 (384)
Q Consensus 275 ~~~~~rrit~EYvli~gvN-Ds~e~a~~L~~ll~~~~-~~vNLIp~N~~~ 322 (384)
+ . +-.+-+-++ || ++.++..++.+++.... -.+..||.=+..
T Consensus 153 ~-~-~v~~~~~~v----v~~~n~~~~~ei~~~l~~~g~~~i~fip~~~~~ 196 (378)
T COG0641 153 A-H-GVDFNTLTV----VNRQNVLHPEEIYHFLKSEGSKFIQFIPLVESD 196 (378)
T ss_pred H-C-CCCEEEEEE----ECHHHHHCHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 7-5-884699999----764453079999999997376638988511688
No 32
>PRK06267 hypothetical protein; Provisional
Probab=98.05 E-value=0.00043 Score=51.36 Aligned_cols=191 Identities=15% Similarity=0.279 Sum_probs=119.5
Q ss_pred EEEEEECCCCHHCCCCCCC--CCCHH----HCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 3898840651004861322--44111----02789899999999999972220344443434445458611014410145
Q gi|254781120|r 115 TLCVSSQVGCSLTCSFCYT--GTQKL----VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 (384)
Q Consensus 115 T~CvSSQvGC~m~C~FCaT--g~~G~----~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmG 188 (384)
++=+|.---|.=.|.||+= ..... .-.++.+||++....+.+. | . ..+++.-|
T Consensus 30 lIefsN~C~~~~dC~YCg~sa~~~k~k~p~ryR~s~EeIl~~A~~~~~~------------------G--~-kt~vLqsG 88 (324)
T PRK06267 30 ALFLGWYCNLGDPCKFCFMSTQKDKIKDPLKARRRPESILAEAIIMKRI------------------G--W-KLEFISGG 88 (324)
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHH------------------C--C-CEEEEECC
T ss_conf 8888253589999876877777777764665528999999999999983------------------9--9-97998048
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHH-CCCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHH
Q ss_conf 44542899999960376845778775368885138741478860-12565179984045511344412331257899999
Q gi|254781120|r 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267 (384)
Q Consensus 189 EPl~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~I~~la-~~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~ 267 (384)
|- .+-+.+.+.++.+..-.+. .||+| .|....-.... ....+.. .|+.++.++.++|-|. .++++-+
T Consensus 89 ed-yt~eel~~ii~~IK~i~~~-----avtLS-lG~~s~e~~~~~~~aG~~~--~lETan~~ly~~i~p~---~s~e~Ri 156 (324)
T PRK06267 89 YG-YTTEEINDIIEMISYIQGS-----KQYLN-VGIIDFENLNLNEIEGVVG--AVETVNPKLHEELCPG---KPLDKIK 156 (324)
T ss_pred CC-CCHHHHHHHHHHHHHHCCC-----CEEEE-CCCCCHHHHHHHHHCCHHH--HHHCCCHHHHCCCCCC---CCHHHHH
T ss_conf 77-9989999999999860187-----16971-5878799997776637014--2414798887027999---9889999
Q ss_pred HHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCC-CEEEEEECCCCCCCCCCC---CCHHHHHHHHHHHH
Q ss_conf 9999998625894599999872699988899999999832545-316675127788798868---89899999999999
Q gi|254781120|r 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP-AKINLIPFNPWPGCEYLC---SDQKDIVTFSECIK 342 (384)
Q Consensus 268 ~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~-~~vNLIp~N~~~~~~~~~---~~~~~i~~F~~~L~ 342 (384)
+.++.-. .. |-.+-- -.|=|+-.+.+|...++.+++.+. -.|-+=||||++|.||+- ++...........+
T Consensus 157 ~~l~~lk-~~-G~e~gs--G~ivGlGET~ed~~~~~~~lkel~~d~I~I~~f~P~~gTP~en~p~~t~~e~lk~iA~~R 231 (324)
T PRK06267 157 EMLKKAK-DL-GLKTGI--TIILGLGETEDDIELLLNLIEELNLDRITFYSLNPQKETIFEGKPSPTTLEYMNWVSSVR 231 (324)
T ss_pred HHHHHHH-HC-CCCEEE--EEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 9999999-83-983200--468737988999999999999769997632584589999889999989999999999999
No 33
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=97.84 E-value=0.00085 Score=49.16 Aligned_cols=162 Identities=19% Similarity=0.257 Sum_probs=87.9
Q ss_pred EEEEECCCCCCCEEEEEECCCCHHCCCCCCCCCC------HHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 5443023467733898840651004861322441------1102789899999999999972220344443434445458
Q gi|254781120|r 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ------KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176 (384)
Q Consensus 103 IEsVlip~~~r~T~CvSSQvGC~m~C~FCaTg~~------G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~ 176 (384)
.-+|+++. -||.++|.||-|... .-..-+++.||++++.....
T Consensus 22 ~p~vFvR~-----------~GCnl~C~~CDT~y~~~~~~~~~~~~~~~~~i~~~~~~~~~-------------------- 70 (238)
T TIGR03365 22 QKTMFVRT-----------GGCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQELKALGG-------------------- 70 (238)
T ss_pred CEEEEEEE-----------CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC--------------------
T ss_conf 31899940-----------89898676589887617878877563789999999998348--------------------
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCCCCCEEEEEECCCCHHHHHHCC
Q ss_conf 61101441014544542899999960376845778775368885138741478860125651799840455113444123
Q gi|254781120|r 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVP 256 (384)
Q Consensus 177 ~~i~NiVfMGmGEPl~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~I~~la~~~~~~LAiSLha~~~~~R~~lmP 256 (384)
.....|++-| ||||+. .++..-++.+.+ .|+ +|+|-|.|-+| +..+.+. ..+.+|.--|+.. |+
T Consensus 71 ~~~~~V~iTG-GEPllq-~~~~~L~~~l~~-~g~-----~v~iETnGt~~-~~~~~~~--d~~~~d~K~psSg-----~~ 134 (238)
T TIGR03365 71 GTPLHVSLSG-GNPALQ-KPLGELIDLGKA-KGY-----RFALETQGSVW-QDWFRDL--DDLTLSPKPPSSG-----ME 134 (238)
T ss_pred CCCCEEEECC-CCHHHH-CCHHHHHHHHHH-CCC-----EEEEECCCCCC-CCCCCCC--CEEEEEEECCCCC-----CC
T ss_conf 9861899459-983444-189999999985-798-----49997899876-0004557--8899964779998-----96
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 312578999999999998625894599999872699988899999999832545316675127788
Q gi|254781120|r 257 INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP 322 (384)
Q Consensus 257 i~~~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N~~~ 322 (384)
.+ | ..+-+.+.. .. . ...+.|-+|+- +-+ ..+.|+++++-... +.|=|=|-|..+
T Consensus 135 ~~--~--~~~~~~l~~-~~-~-~~~~~~KFVI~-~~~-D~~~a~ei~~~~~~--~pv~l~p~~~~~ 189 (238)
T TIGR03365 135 TD--W--QALDDCIER-LD-D-GPQTSLKVVVF-DDA-DYAYAKEVHARYPD--LPFYLQPGNHTP 189 (238)
T ss_pred CC--H--HHHHHHHHH-HC-C-CCCCEEEEEEC-CHH-HHHHHHHHHHHCCC--CCEEECCCCCCC
T ss_conf 34--6--789999998-44-4-89706999976-789-99999999997479--978965688856
No 34
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=97.74 E-value=0.0011 Score=48.20 Aligned_cols=183 Identities=15% Similarity=0.249 Sum_probs=107.7
Q ss_pred CCCCCCEEEEE-ECCCCHHCCCCCCCC-CC----HHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 34677338988-406510048613224-41----1102789899999999999972220344443434445458611014
Q gi|254781120|r 109 PEKSRGTLCVS-SQVGCSLTCSFCYTG-TQ----KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 (384)
Q Consensus 109 p~~~r~T~CvS-SQvGC~m~C~FCaTg-~~----G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~Ni 182 (384)
|+.....+=+- +-.-|.++|..|.-. +. .-.+..-..|+++++ +++++... ....| ++
T Consensus 8 ~~~~p~hvm~KP~s~~CNL~C~YCyy~~~~~~~~~~~~~~Ms~e~l~~~--I~~~~~~~-------------~~~~v-~f 71 (412)
T PRK13745 8 PFAKPLYVMLKPVGAVCNLACDYCYYLEKSKLYQENPKHVMSDELLEKF--IKEYINSQ-------------TMPQV-LF 71 (412)
T ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH--HHHHHHCC-------------CCCEE-EE
T ss_conf 6667627982135587588998678816143565677578989999999--99999648-------------99858-99
Q ss_pred EEECCCCHHHH-HHHHHHHHHCCCCCCCCCCCCCEE--EEEECCCC--HHHHHHHCCCCCCEEEEEECCCCHH-HHHHCC
Q ss_conf 41014544542-899999960376845778775368--88513874--1478860125651799840455113-444123
Q gi|254781120|r 183 VMMGMGEPLCN-FDNVKKSLSIASDSMGLSFSKRRI--TLSTSGFV--PNIARVGEEIGVMLAISLHAVSNDL-RNILVP 256 (384)
Q Consensus 183 VfMGmGEPl~N-~d~v~~ai~~l~~~~g~~~~~r~I--TvST~Gi~--p~I~~la~~~~~~LAiSLha~~~~~-R~~lmP 256 (384)
+|-| ||||++ .+-..+++++.. ... ..++| ||-|-|.. +..-+|..+..+.+-|||-.|..-. |.+.-+
T Consensus 72 ~~~G-GEPlL~gl~f~~~~v~l~~-~~~---~g~~i~~siQTNGtLL~dew~~ff~~~~f~VgiSiDGp~~~HD~~R~~~ 146 (412)
T PRK13745 72 TWHG-GETLMRPLSFYKKAMELQK-KYA---RGRTIDNCIQTNGTLLTDEWCEFFRENNWLVGVSIDGPQEFHDEYRKNK 146 (412)
T ss_pred EEEC-CCCCCCCHHHHHHHHHHHH-HHC---CCCEEEEEEEECCEECCHHHHHHHHHCCCEEEEECCCCHHHHHHCCCCC
T ss_conf 9868-5445654789999999999-853---8984689998778754999999999859679996258878874027988
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCC-CHHHHHHHHHHHCCCCC-EEEEEECC
Q ss_conf 31257899999999999862589459999987269998-88999999998325453-16675127
Q gi|254781120|r 257 INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND-SPRDALNLIKILKGIPA-KINLIPFN 319 (384)
Q Consensus 257 i~~~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvND-s~e~a~~L~~ll~~~~~-~vNLIp~N 319 (384)
+.+=+.+.++++++-..+ . + +||-.|-=||+ +.++..++-++++.+.+ ++..||+=
T Consensus 147 -~G~gs~~~v~~~i~lL~~-~-~----v~fn~L~vv~~~n~~~p~~iY~f~k~lg~~~lQFiP~v 204 (412)
T PRK13745 147 -MGKPSFVKVMKGINLLKK-H-G----VEWNAMAVVNDFNADYPLDFYNFFKELDCHYIQFAPIV 204 (412)
T ss_pred -CCCCHHHHHHHHHHHHHH-C-C----CCEEEEEEEECHHHHCHHHHHHHHHHCCCCEEEEECCC
T ss_conf -998779999999999998-4-9----96469999811154588999999997599668763123
No 35
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.58 E-value=0.0048 Score=43.60 Aligned_cols=86 Identities=20% Similarity=0.249 Sum_probs=60.7
Q ss_pred EEEEEECCCCHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCC
Q ss_conf 68885138741478860125651799840455113444123312578999999999998625894599999872699988
Q gi|254781120|r 216 RITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 (384)
Q Consensus 216 ~ITvST~Gi~p~I~~la~~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs 295 (384)
=||+.--+ -..++|..+..=--|-||+||+++++|.++|- |+ --..+++.++.+.+ . |=.+--.-||-.|+||+
T Consensus 120 fiTLTNl~-e~D~~RIi~~rLSPl~ISVHaT~pelR~~mL~-n~--~ag~il~~l~~L~~-~-gI~~h~QIVLCPGiNDG 193 (433)
T TIGR03279 120 YLTLTNLP-PAEWQRIEQLRLSPLYVSVHATEPSLRARLLK-NP--RAGLILEQLKWFQE-R-RLQLHAQVVVCPGINDG 193 (433)
T ss_pred EEEEECCC-HHHHHHHHHHCCCCEEEEEECCCHHHHHHHHC-CC--CHHHHHHHHHHHHH-C-CCEEEEEEEECCCCCCH
T ss_conf 57651799-89999999825786389986399899999876-99--57899999999997-6-98798479987996766
Q ss_pred HHHHHHHHHHHC
Q ss_conf 899999999832
Q gi|254781120|r 296 PRDALNLIKILK 307 (384)
Q Consensus 296 ~e~a~~L~~ll~ 307 (384)
.+-.+-+..|.+
T Consensus 194 ~~L~rTi~DL~~ 205 (433)
T TIGR03279 194 KHLERTLRDLAQ 205 (433)
T ss_pred HHHHHHHHHHHH
T ss_conf 999989999998
No 36
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.43 E-value=0.017 Score=39.62 Aligned_cols=184 Identities=20% Similarity=0.330 Sum_probs=123.3
Q ss_pred CCCCCEEEEEECCCCHHCCCCCCCCCC-HHHCCCCHHHHHHHHHHH-HHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 467733898840651004861322441-110278989999999999-997222034444343444545861101441014
Q gi|254781120|r 110 EKSRGTLCVSSQVGCSLTCSFCYTGTQ-KLVRNLTAEEILLQVLLA-RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 (384)
Q Consensus 110 ~~~r~T~CvSSQvGC~m~C~FCaTg~~-G~~RNLt~~EIv~Qv~~~-~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGm 187 (384)
+.++.+.-|+=|-||.-.|+||.+-.. |-.|+-..++|+.|+-.+ .+- +.-|++-|.
T Consensus 140 ~~~~~~A~v~I~eGCn~~CtfCiiP~~RG~~rSr~~e~Il~ev~~Lv~~G---------------------~kEI~L~gq 198 (437)
T COG0621 140 REGGVRAFVKIQEGCNKFCTFCIIPYARGKERSRPPEDILKEVKRLVAQG---------------------VKEIVLTGQ 198 (437)
T ss_pred CCCCEEEEEEHHCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCC---------------------CEEEEEEEE
T ss_conf 67874799881208678888064053678755779899999999999889---------------------749999988
Q ss_pred -----CCH----HHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHH----HHHHHCCCCCCEEEEEECCCCHHHHHH
Q ss_conf -----544----5428999999603768457787753688851387414----788601256517998404551134441
Q gi|254781120|r 188 -----GEP----LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN----IARVGEEIGVMLAISLHAVSNDLRNIL 254 (384)
Q Consensus 188 -----GEP----l~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~----I~~la~~~~~~LAiSLha~~~~~R~~l 254 (384)
|-- -.|+..+++.+.-+ .| -.||-++|+=..+- |+.+++.. ++.=.||-|-|.-=+++
T Consensus 199 dv~aYG~D~~~~~~~l~~Ll~~l~~I---~G----~~riR~~~~~P~~~~d~lIe~~~~~~--kv~~~lHlPvQsGsd~I 269 (437)
T COG0621 199 DVNAYGKDLGGGKPNLADLLRELSKI---PG----IERIRFGSSHPLEFTDDLIEAIAETP--KVCPHLHLPVQSGSDRI 269 (437)
T ss_pred EHHHCCCCCCCCCCCHHHHHHHHHCC---CC----CEEEEEECCCCHHCCHHHHHHHHCCC--CCCCCCCCCCCCCCHHH
T ss_conf 11010446777766899999999607---99----10899935880011889999986578--41434467555698799
Q ss_pred CC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCC-CCCHHHHHHHHHHHCCC-CCEEEEEECCCCCCCC
Q ss_conf 23-312578999999999998625894599999872699-98889999999983254-5316675127788798
Q gi|254781120|r 255 VP-INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI-NDSPRDALNLIKILKGI-PAKINLIPFNPWPGCE 325 (384)
Q Consensus 255 mP-i~~~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gv-NDs~e~a~~L~~ll~~~-~~~vNLIp~N~~~~~~ 325 (384)
.- -+|+|.-++.++.++.+-+ . .--++|-=-.|=|. .-+.+|=..+.+|++.. .-++|.-+|-|-||.+
T Consensus 270 Lk~M~R~yt~e~~~~~i~k~R~-~-~Pd~~i~tDiIVGFPgETEedFe~tl~lv~e~~fd~~~~F~YSpRpGTp 341 (437)
T COG0621 270 LKRMKRGYTVEEYLEIIEKLRA-A-RPDIAISTDIIVGFPGETEEDFEETLDLVEEVRFDRLHVFKYSPRPGTP 341 (437)
T ss_pred HHHHCCCCCHHHHHHHHHHHHH-H-CCCCEEECCEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf 9973787679999999999998-6-8985675267997999999999999999997488878533048999982
No 37
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=97.36 E-value=0.0079 Score=42.01 Aligned_cols=175 Identities=18% Similarity=0.301 Sum_probs=105.6
Q ss_pred EEEECCCCHHCCCCCCCCCCHHHC-----CCCHHH-HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCH
Q ss_conf 988406510048613224411102-----789899-99999999997222034444343444545861101441014544
Q gi|254781120|r 117 CVSSQVGCSLTCSFCYTGTQKLVR-----NLTAEE-ILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 (384)
Q Consensus 117 CvSSQvGC~m~C~FCaTg~~G~~R-----NLt~~E-Iv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEP 190 (384)
-++.=+||.-||.+|.--.++..- .+..-+ +++++ .+.+.. .+.+.+-|.+-.+-+|
T Consensus 32 ~inpy~GC~h~C~YCYa~~~~~~~~~~~~~v~vk~n~~e~l---~~el~~--------------~~~k~~~i~is~~TDp 94 (297)
T COG1533 32 TLNPYRGCSHGCIYCYARPMHGYLPKSPTKVNVKENLLELL---ERELRK--------------PGPKRTVIAISSVTDP 94 (297)
T ss_pred ECCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEHHHHHHHH---HHHHHH--------------CCCCCEEEEEECCCCC
T ss_conf 33774787788841336201466567860554015699999---988752--------------4678559998546888
Q ss_pred HHH----HHHHHHHHHCCCCCCCCCCCCCEEEEEECCC-C-HHHHHHH---CCCCCCEEEEEECCCCHHHHHHCCCCCCC
Q ss_conf 542----8999999603768457787753688851387-4-1478860---12565179984045511344412331257
Q gi|254781120|r 191 LCN----FDNVKKSLSIASDSMGLSFSKRRITLSTSGF-V-PNIARVG---EEIGVMLAISLHAVSNDLRNILVPINRKY 261 (384)
Q Consensus 191 l~N----~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi-~-p~I~~la---~~~~~~LAiSLha~~~~~R~~lmPi~~~~ 261 (384)
..= +......++++. +.|+. ++|+|=.. + -.|+.|. +...+..++|+.+.+.++++.+=|-+.
T Consensus 95 yqp~E~~~~ltR~ilei~~-~~~~~-----v~I~TKS~lv~RDld~l~~~~~~~~v~V~~Sitt~d~~l~k~~EP~ap-- 166 (297)
T COG1533 95 YQPIEKEYRLTRKILEILL-KYGFP-----VSIVTKSALVLRDLDLLLELAERGKVRVAVSITTLDEELAKILEPRAP-- 166 (297)
T ss_pred CCCHHHHHHHHHHHHHHHH-HCCCC-----EEEEECCCCHHCCHHHHHHHCCCCCEEEEEEEECCCHHHHHHCCCCCC--
T ss_conf 8564778789999999988-53996-----799977741010278998401126518999951684888986589996--
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEE-EEEECCCCCCHHHHHHHHHHHCCCC---CEEEEEECCC
Q ss_conf 899999999999862589459999-9872699988899999999832545---3166751277
Q gi|254781120|r 262 PLEMLIDACRHYPGLSNARRITFE-YVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNP 320 (384)
Q Consensus 262 ~l~~l~~a~~~y~~~~~~rrit~E-Yvli~gvNDs~e~a~~L~~ll~~~~---~~vNLIp~N~ 320 (384)
+.++=++|+++..+ . |=++.+- ==+|.++|| ++..++..-+..-. +-...+.++.
T Consensus 167 sp~~Ri~al~~l~e-a-Gi~~~v~v~PIiP~~~d--~e~e~~l~~~~~ag~~~v~~~~l~~~~ 225 (297)
T COG1533 167 SPEERLEALKELSE-A-GIPVGLFVAPIIPGLND--EELERILEAAAEAGARVVVYGTLRLRL 225 (297)
T ss_pred CHHHHHHHHHHHHH-C-CCEEEEEEECCCCCCCH--HHHHHHHHHHHHCCCCEEEEEEEECCH
T ss_conf 98999999999998-7-98489998553078875--889999999997577413631330457
No 38
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=97.29 E-value=0.027 Score=38.02 Aligned_cols=209 Identities=17% Similarity=0.291 Sum_probs=125.2
Q ss_pred EEEEECCCCHHCCCCCCCC---CCHHH--CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCH
Q ss_conf 8988406510048613224---41110--278989999999999997222034444343444545861101441014544
Q gi|254781120|r 116 LCVSSQVGCSLTCSFCYTG---TQKLV--RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 (384)
Q Consensus 116 ~CvSSQvGC~m~C~FCaTg---~~G~~--RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEP 190 (384)
+=++| .||+=+|.||+-. +.|.. .=++..||++.--.+++. |--=.=+|-+|-| .
T Consensus 54 i~ikt-g~c~edC~yC~qS~~~~~~~~~~~l~~~eeIle~Ak~ak~~------------------Ga~r~c~~aagr~-~ 113 (335)
T COG0502 54 ISIKT-GCCPEDCAYCSQSARYKTGVKARKLMEVEEILEAAKKAKAA------------------GATRFCMGAAGRG-P 113 (335)
T ss_pred EEEEC-CCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHC------------------CCCEEEEEEECCC-C
T ss_conf 87334-88898898760010476798233128999999999999974------------------9950799873167-7
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCC--HHHHHHHCC-C-CCCEEEEEECCCCHHHHHHCCCCCCCCHHHH
Q ss_conf 54289999996037684577877536888513874--147886012-5-6517998404551134441233125789999
Q gi|254781120|r 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEE-I-GVMLAISLHAVSNDLRNILVPINRKYPLEML 266 (384)
Q Consensus 191 l~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~--p~I~~la~~-~-~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l 266 (384)
=...+.|..+++...+.-|+. +.-|.|.. ...++|++- . .++. -|-+ +++..++|.| ..+.++-
T Consensus 114 ~~~~~~i~~~v~~Vk~~~~le------~c~slG~l~~eq~~~L~~aGvd~ynh--NLeT-s~~~y~~I~t---t~t~edR 181 (335)
T COG0502 114 GRDMEEVVEAIKAVKEELGLE------VCASLGMLTEEQAEKLADAGVDRYNH--NLET-SPEFYENIIT---TRTYEDR 181 (335)
T ss_pred CCCHHHHHHHHHHHHHHCCCH------HHHCCCCCCHHHHHHHHHCCHHHEEC--CCCC-CHHHHCCCCC---CCCHHHH
T ss_conf 744899999999999846928------64025879999999999718113303--5556-9788756578---9888899
Q ss_pred HHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCC--CEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 99999998625894599999872699988899999999832545--3166751277887988688989999999999987
Q gi|254781120|r 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRS 344 (384)
Q Consensus 267 ~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~--~~vNLIp~N~~~~~~~~~~~~~~i~~F~~~L~~~ 344 (384)
++.++.- +.. |-. .-=-.|=|+.-+.+|--.++..|+.++ -.|-+=.+||+||.|+.....-....|.+++.-.
T Consensus 182 ~~tl~~v-k~~-Gi~--vcsGgI~GlGEs~eDri~~l~~L~~l~~pdsVPIn~l~P~~GTPle~~~~~~~~e~lk~IA~~ 257 (335)
T COG0502 182 LNTLENV-REA-GIE--VCSGGIVGLGETVEDRAELLLELANLPTPDSVPINFLNPIPGTPLENAKPLDPFEFLKTIAVA 257 (335)
T ss_pred HHHHHHH-HHC-CCC--CCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 9999999-980-985--045127618998889999999997189988542321037999866658999989999999999
Q ss_pred CC---EEEECCCCCCCCCC
Q ss_conf 98---78541587771001
Q gi|254781120|r 345 GY---SSPIRTPRGLDILA 360 (384)
Q Consensus 345 Gi---~~tiR~srG~DI~a 360 (384)
.+ ..-||.+-|.+...
T Consensus 258 Ri~~P~~~Ir~s~gr~~~~ 276 (335)
T COG0502 258 RIIMPKSMIRLSAGRETML 276 (335)
T ss_pred HHHCCCCEEECCCCCCCCC
T ss_conf 9977864567258835225
No 39
>PRK08508 biotin synthase; Provisional
Probab=97.25 E-value=0.03 Score=37.72 Aligned_cols=206 Identities=14% Similarity=0.230 Sum_probs=126.2
Q ss_pred CCCHHCCCCCCCC---CCHHHC-C-CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCCCEEEEECCCCHHHHHH
Q ss_conf 6510048613224---411102-7-89899999999999972220344443434445458-6110144101454454289
Q gi|254781120|r 122 VGCSLTCSFCYTG---TQKLVR-N-LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIVMMGMGEPLCNFD 195 (384)
Q Consensus 122 vGC~m~C~FCaTg---~~G~~R-N-Lt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~-~~i~NiVfMGmGEPl~N~d 195 (384)
-+|+-+|.||+-- +.+..| . ++.+||+++...+... | .+. -+|--|-|.+=...|
T Consensus 15 G~C~edC~yCaQs~~~~t~i~~Y~l~~~eeIl~~A~~a~~~------------------G~~rf-~lv~sg~~~~~~~~e 75 (279)
T PRK08508 15 GNCKEDCKYCTQSAHYKADIKRYKRKEIEQIVQEAKMARAN------------------GALGF-CLVTAGRGLDDKKLE 75 (279)
T ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHC------------------CCCEE-EEEEECCCCCHHHHH
T ss_conf 79998786444817679998610789999999999999975------------------99768-999823688754499
Q ss_pred HHHHHHHCCCCCCCCCCCCCEEEEEECCCCH--HHHHHHCC-C-CCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 9999960376845778775368885138741--47886012-5-651799840455113444123312578999999999
Q gi|254781120|r 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVP--NIARVGEE-I-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 (384)
Q Consensus 196 ~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p--~I~~la~~-~-~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~ 271 (384)
.|..+++.+.... .++ .++.| .|+.. ..++|.+- . .+++ -|..+ ++.-.+|.| .++.++=++.++
T Consensus 76 ~v~~~v~~Ik~~~-~~l---~~c~s-lG~l~~e~~~~LkeAGvdrY~h--NlETs-~~~y~~I~t---Thty~dRl~tl~ 144 (279)
T PRK08508 76 YVAKAAKAVKKEV-PGL---HLIAC-NGMASVEQLKELKKAGIFSYNH--NLETS-KEFFPKICT---THSWEERFQTCL 144 (279)
T ss_pred HHHHHHHHHHHCC-CCE---EEEEE-CCCCCHHHHHHHHHCCCCEECC--CCCCC-HHHHCCCCC---CCCHHHHHHHHH
T ss_conf 9999999986337-993---57611-7857999999999839712307--66767-687576589---988899999999
Q ss_pred HHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCC-EEEEEECCCCCCCCCCCC--CHHHHHHHHHHHHHCCCEE
Q ss_conf 9986258945999998726999888999999998325453-166751277887988688--9899999999999879878
Q gi|254781120|r 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEYLCS--DQKDIVTFSECIKRSGYSS 348 (384)
Q Consensus 272 ~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~-~vNLIp~N~~~~~~~~~~--~~~~i~~F~~~L~~~Gi~~ 348 (384)
.-. .. |-.|-= =.|=|+--+.+|--+++-.|+.+.+ .|-+=+|||++|.|+..+ +...+.....+.+-.-=.+
T Consensus 145 ~~k-~a-Gl~vCs--GgIiGlGEt~edrve~a~~L~eL~~dsVPIN~liPi~GTPLe~~~l~~~e~lr~iAl~RlilP~a 220 (279)
T PRK08508 145 NAK-EA-GLGLCS--GGIFGLGESWEDRISMLKSLASLSPHSTPINFFIPNPALPLDTPTLSADEALEIVRLAKEALPNA 220 (279)
T ss_pred HHH-HC-CCEEEC--CCEEECCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 999-81-994867--85447899989999999999838998751567658999988889999999999999999978987
Q ss_pred EECCCCCCCCCCC
Q ss_conf 5415877710011
Q gi|254781120|r 349 PIRTPRGLDILAA 361 (384)
Q Consensus 349 tiR~srG~DI~aA 361 (384)
.||-+-|+...-.
T Consensus 221 ~Ir~agGRe~~l~ 233 (279)
T PRK08508 221 RLMVAGGREVVFG 233 (279)
T ss_pred EEEECCCHHHHCH
T ss_conf 6562465244556
No 40
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=97.17 E-value=0.0057 Score=43.07 Aligned_cols=185 Identities=17% Similarity=0.188 Sum_probs=95.6
Q ss_pred EEEECCCCCCCEEEEEECCCCHHCCCCCCCCCCH-H--HCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4430234677338988406510048613224411-1--027898999999999999722203444434344454586110
Q gi|254781120|r 104 ETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK-L--VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 (384)
Q Consensus 104 EsVlip~~~r~T~CvSSQvGC~m~C~FCaTg~~G-~--~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~ 180 (384)
--+.||+-+ + |...|.||+=.+.- - ---|+.+||++++..+... -++
T Consensus 39 ~n~~In~TN---i-------C~~~C~fCaF~r~p~~~~ay~lt~eei~~~~~~a~~~--------------------G~~ 88 (343)
T TIGR03551 39 VNRNINFTN---V-------CYGGCGFCAFRKRKGDADAYLLSLEEIAERAAEAWKA--------------------GAT 88 (343)
T ss_pred CCCCCCHHH---H-------HHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC--------------------CCC
T ss_conf 500625526---8-------7478976778668999866007999999999999976--------------------996
Q ss_pred EEEEECCCC----HHHHHHHHHHHHHCCCCC-CCCCCCCCEEE--EEECCCCH--HHHHHHC-CCCCCEEEEEECCCCHH
Q ss_conf 144101454----454289999996037684-57787753688--85138741--4788601-25651799840455113
Q gi|254781120|r 181 NIVMMGMGE----PLCNFDNVKKSLSIASDS-MGLSFSKRRIT--LSTSGFVP--NIARVGE-EIGVMLAISLHAVSNDL 250 (384)
Q Consensus 181 NiVfMGmGE----Pl~N~d~v~~ai~~l~~~-~g~~~~~r~IT--vST~Gi~p--~I~~la~-~~~~~LAiSLha~~~~~ 250 (384)
-|.|.| |+ |+..|.+++++++--.-. .--++|+--|- ...+|+.. -+++|.+ .+..-+--+.---.++.
T Consensus 89 Ei~~~g-G~~Pel~~~~y~e~~r~ik~~~p~~~i~a~s~~Ei~~~a~~~g~~~~e~l~~Lk~AGl~s~pg~~aEil~~~v 167 (343)
T TIGR03551 89 EVCIQG-GIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDSMPGTAAEILDDEV 167 (343)
T ss_pred EEEEEC-CCCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHCCHHH
T ss_conf 899825-8687888889999999998748830102278999999998659999999999997587767886513214012
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 44412331257899999999999862589459999987269998889999999983254531667512778
Q gi|254781120|r 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPW 321 (384)
Q Consensus 251 R~~lmPi~~~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N~~ 321 (384)
|..|-| .|.|.++-++.++.--+..=.---|+=|=..+..-|..+|...|-++-.....---.||+|=.
T Consensus 168 r~~i~P--~K~~~~~wl~~~~~Ah~lGi~ttatml~G~gEt~eerv~hL~~lR~lqd~tggf~~fIp~~f~ 236 (343)
T TIGR03551 168 RKVICP--DKLSTAEWIEIIKTAHKLGIPTTATIMYGHVETPEHWVDHLLILREIQEETGGFTEFVPLPFV 236 (343)
T ss_pred HHCCCC--CCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 414696--989999999999999985997202234278899999999999999862013882699813656
No 41
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=96.98 E-value=0.037 Score=37.00 Aligned_cols=185 Identities=18% Similarity=0.252 Sum_probs=103.7
Q ss_pred HCCCCCCCCCCHHH-CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHH--HHHHHHHHHH
Q ss_conf 04861322441110-27898999999999999722203444434344454586110144101454454--2899999960
Q gi|254781120|r 126 LTCSFCYTGTQKLV-RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC--NFDNVKKSLS 202 (384)
Q Consensus 126 m~C~FCaTg~~G~~-RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl~--N~d~v~~ai~ 202 (384)
.||.+|..|-.-.- .=......++|+...-... ..+.+-|-.-|=|.|-- ++.++.+.+.
T Consensus 37 ~GCDyCt~~V~E~~~~F~pl~~v~~~v~~~L~f~-----------------~~~~~kitISgGGD~ScYP~l~eL~~~l~ 99 (404)
T TIGR03278 37 KGCDYCTRSVWEINGDFIPPQVVLGEVQTSLGFR-----------------TGRDTKVTISGGGDVSCYPELEELTKGLS 99 (404)
T ss_pred CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC-----------------CCCCEEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 7861131437865489769799999999863456-----------------77722899807988441631999999998
Q ss_pred CCCCCCCCCCCCCEEEEEECCC---CHHHHH-HHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 3768457787753688851387---414788-601256517998404551134441233125789999999999986258
Q gi|254781120|r 203 IASDSMGLSFSKRRITLSTSGF---VPNIAR-VGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN 278 (384)
Q Consensus 203 ~l~~~~g~~~~~r~ITvST~Gi---~p~I~~-la~~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~y~~~~~ 278 (384)
-+.-|- .+| -|||= -|.|-. |.+.---...+|+-|+++++|.++|- .+.| +.-++++++|.. +
T Consensus 100 ~~~lpi--HLG------YTSGKGfd~~~~a~~li~~Gv~EVtfTVFatDp~LR~ewM~--D~~p-E~SL~~L~~fc~-~- 166 (404)
T TIGR03278 100 DLGLPI--HLG------YTSGKGFDDPEIAEFLIDNGVREVSFTVFATDPELRREWMK--DPTP-EASLQCLRRFCE-S- 166 (404)
T ss_pred HCCCCE--EEC------CCCCCCCCCHHHHHHHHHCCCCEEEEEEEECCHHHHHHHCC--CCCH-HHHHHHHHHHHH-H-
T ss_conf 669835--741------23788989879999999679737999986089899998716--9986-889999999984-4-
Q ss_pred CCEEEEEEEEECCCCCCHHHHHHHHHHHC-CCCCE----------EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 94599999872699988899999999832-54531----------66751277887988688989999999999987
Q gi|254781120|r 279 ARRITFEYVMLKGINDSPRDALNLIKILK-GIPAK----------INLIPFNPWPGCEYLCSDQKDIVTFSECIKRS 344 (384)
Q Consensus 279 ~rrit~EYvli~gvNDs~e~a~~L~~ll~-~~~~~----------vNLIp~N~~~~~~~~~~~~~~i~~F~~~L~~~ 344 (384)
=-|.-.-|+|.||||...-.+-+..|-. |-+.- =-||-=|. |-.+- -....+++|.++++..
T Consensus 167 -cev~~A~ViiPGVNDGevL~kT~~~Le~wGakg~ILMRFAN~~eqGLIL~N~-Pii~g--i~~htv~EF~~lV~e~ 239 (404)
T TIGR03278 167 -CEVHAASVIIPGVNDGDVLWKTCADLESWGAKALILMRFANTEEQGLILGNA-PIIPG--IKPHTVSEFKNIVRET 239 (404)
T ss_pred -HHHEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCEEECCC-CCCCC--CCCCCHHHHHHHHHHH
T ss_conf -1113789980686856999999999998387568987405774441355687-67688--7767789999999999
No 42
>PRK07360 FO synthase subunit 2; Reviewed
Probab=96.96 E-value=0.0077 Score=42.09 Aligned_cols=180 Identities=18% Similarity=0.232 Sum_probs=92.1
Q ss_pred EEEEECCCCCCCEEEEEECCCCHHCCCCCCCCCCH---HHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 54430234677338988406510048613224411---102789899999999999972220344443434445458611
Q gi|254781120|r 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK---LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 (384)
Q Consensus 103 IEsVlip~~~r~T~CvSSQvGC~m~C~FCaTg~~G---~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i 179 (384)
+-.+.|++-+ + |..+|.||+=.+.- =---|+.+||++.+..+... -+
T Consensus 59 v~n~~In~TN---i-------C~~~C~fCaF~r~p~~~~ay~ls~eEi~~~~~~a~~~--------------------G~ 108 (375)
T PRK07360 59 VVNRNINFTN---I-------CEGHCGFCAFRRDKGDPGAFWLDIEEILEKAAEAVKA--------------------GA 108 (375)
T ss_pred EEEECCCHHH---H-------HHCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHC--------------------CC
T ss_conf 8252665617---9-------8708982734078899766027899999999999865--------------------88
Q ss_pred CEEEEECC--------CCHHHHHHHHHHHHHCCC---CCCCCCCCCCEEE--EEECCCC--HHHHHHHCC-C---CCCEE
Q ss_conf 01441014--------544542899999960376---8457787753688--8513874--147886012-5---65179
Q gi|254781120|r 180 SNIVMMGM--------GEPLCNFDNVKKSLSIAS---DSMGLSFSKRRIT--LSTSGFV--PNIARVGEE-I---GVMLA 240 (384)
Q Consensus 180 ~NiVfMGm--------GEPl~N~d~v~~ai~~l~---~~~g~~~~~r~IT--vST~Gi~--p~I~~la~~-~---~~~LA 240 (384)
|-|.|.|= .+|+.=|.++++++.--. +.++ +++--|. -..+|+. .-+.+|.+- + |-.-|
T Consensus 109 tEv~~~gG~~P~l~~~~~~~~~y~~~~~~ik~~~p~i~i~a--~s~~Ei~~~a~~~g~~~~e~l~~LkeAGl~s~pG~ga 186 (375)
T PRK07360 109 TEVCIQGGLHPAADLNGSSLDFYLEILKAIKAEFPGIHLHA--FSPQEVQFAAREDGLSYEEVLKALKDAGLDSMPGTAA 186 (375)
T ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE--CCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCC
T ss_conf 08997688783445464518999999999998689855640--8999999988664998899999999769875888762
Q ss_pred EEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 9840455113444123312578999999999998625894599999872699988899999999832545316675127
Q gi|254781120|r 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFN 319 (384)
Q Consensus 241 iSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N 319 (384)
.--+++.|..+-| .|-+.++-++.++.--+..=.---|+=|=..+...|..+|...|-+|=...+----.||+|
T Consensus 187 ---Eil~~~vr~~i~P--~K~~~~~wl~v~~~Ah~lGi~ttatmL~Gh~Et~eerv~hL~~iR~lqd~tggf~efIp~~ 260 (375)
T PRK07360 187 ---EILDDEVRRIICP--EKITTAEWIEIVKTAHKLGLPTTSTMMYGHIETPEHRIDHLSILREIQKETGGITEFIPLP 260 (375)
T ss_pred ---CCCCHHHHHCCCC--CCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf ---1034556646598--9889999999999999829970100261898999999999999998887449846997114
No 43
>PRK08444 hypothetical protein; Provisional
Probab=96.73 E-value=0.0078 Score=42.03 Aligned_cols=169 Identities=15% Similarity=0.182 Sum_probs=91.3
Q ss_pred CHHCCCCCCCCCCHH---HCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHH---HHHHH
Q ss_conf 100486132244111---027898999999999999722203444434344454586110144101454454---28999
Q gi|254781120|r 124 CSLTCSFCYTGTQKL---VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC---NFDNV 197 (384)
Q Consensus 124 C~m~C~FCaTg~~G~---~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl~---N~d~v 197 (384)
|..+|+|||=.+.-= -=-|+.+||++.+--+... -+|-|.+.|=.-|-+ =|.++
T Consensus 59 C~~~C~FCaF~r~~~~~~aY~ls~eei~~~~~ea~~~--------------------G~tev~i~GG~~P~~~~eyY~~l 118 (353)
T PRK08444 59 CADVCKFCAFSAHRKNPNPYTMSHEEILEIVKESVKR--------------------GIKEVHIVSAHNPNYGYQWYLEI 118 (353)
T ss_pred CCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHC--------------------CCCEEEEECCCCCCCCHHHHHHH
T ss_conf 5688856756168999987666999999999999975--------------------98789981475989975889999
Q ss_pred HHHHHCCCCCC--CCCCCCCEEE--EEECCCC--HHHHHHHCCCCCCEEEEEECC-----CCHHHHHHCCCCCCCCHHHH
Q ss_conf 99960376845--7787753688--8513874--147886012565179984045-----51134441233125789999
Q gi|254781120|r 198 KKSLSIASDSM--GLSFSKRRIT--LSTSGFV--PNIARVGEEIGVMLAISLHAV-----SNDLRNILVPINRKYPLEML 266 (384)
Q Consensus 198 ~~ai~~l~~~~--g~~~~~r~IT--vST~Gi~--p~I~~la~~~~~~LAiSLha~-----~~~~R~~lmPi~~~~~l~~l 266 (384)
+++++--. |. --++++--|. -..+|+. .-+.+|.+ .+.. ||+.. +|+.|+.|-| .|-+-++-
T Consensus 119 ~r~ik~~~-P~i~i~aft~~EI~~~a~~~~~s~~evL~~Lk~-AGL~---slpGggAEIl~d~VR~~I~p--~K~~~~~W 191 (353)
T PRK08444 119 FKMIKEAY-PNLHVKAMTAAEVDFLSRKFGKSYEEVLEDMLE-YGVD---SMPGGGAEIFDEEVRKKICK--GKVSSERW 191 (353)
T ss_pred HHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCHHHHHHHHHH-HCCC---CCCCCCCHHCCHHHHHHHCC--CCCCHHHH
T ss_conf 99999858-850477177899999999809999999999998-1987---57898720037778976189--98999999
Q ss_pred HHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 99999998625894599999872699988899999999832545316675127
Q gi|254781120|r 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFN 319 (384)
Q Consensus 267 ~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N 319 (384)
++..+.-.+.--+--.|.=|=-++..-|..+|...|-++=..-.--.-.||++
T Consensus 192 l~i~~~AH~lGi~ttaTmmyGhvEt~e~rv~HL~~lR~lQd~tgGF~~FIPl~ 244 (353)
T PRK08444 192 LEIHKYWHKKGKQSNATMLFGHIENREHRIDHMLRLRDLQDKTGGFNAFIPLV 244 (353)
T ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf 99999999829966414677887999999999999998365579835897656
No 44
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.0045 Score=43.78 Aligned_cols=83 Identities=31% Similarity=0.536 Sum_probs=56.3
Q ss_pred CCCEEEEEECCCCHHCCCCCCCCCC-HH-----HCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 7733898840651004861322441-11-----02789899999999999972220344443434445458611014410
Q gi|254781120|r 112 SRGTLCVSSQVGCSLTCSFCYTGTQ-KL-----VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 (384)
Q Consensus 112 ~r~T~CvSSQvGC~m~C~FCaTg~~-G~-----~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfM 185 (384)
+|-|+=|+. .||..+|.+|-|-.- .+ -+-.++.||++++-... ....+|++-
T Consensus 21 Gr~~vFVR~-~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~~---------------------~~~~~V~lT 78 (212)
T COG0602 21 GRPSVFVRF-AGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSLG---------------------YKARGVSLT 78 (212)
T ss_pred CCEEEEEEC-CCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHCC---------------------CCCCEEEEE
T ss_conf 714899976-8978878998987660633368988258999999998508---------------------887669981
Q ss_pred CCCCHHH--HHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCH
Q ss_conf 1454454--2899999960376845778775368885138741
Q gi|254781120|r 186 GMGEPLC--NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226 (384)
Q Consensus 186 GmGEPl~--N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p 226 (384)
| ||||+ |...++..++- .|+. +.+-|.|-.|
T Consensus 79 G-GEP~~~~~l~~Ll~~l~~----~g~~-----~~lETngti~ 111 (212)
T COG0602 79 G-GEPLLQPNLLELLELLKR----LGFR-----IALETNGTIP 111 (212)
T ss_pred C-CCCCCCCCHHHHHHHHHH----CCCE-----EEEECCCCCC
T ss_conf 8-864662239999999985----8840-----9983799715
No 45
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=96.68 E-value=0.063 Score=35.30 Aligned_cols=158 Identities=23% Similarity=0.442 Sum_probs=103.8
Q ss_pred EECCCCHHCCCCCCCCCCHHHCC---------CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 84065100486132244111027---------898999999999999722203444434344454586110144101454
Q gi|254781120|r 119 SSQVGCSLTCSFCYTGTQKLVRN---------LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 (384)
Q Consensus 119 SSQvGC~m~C~FCaTg~~G~~RN---------Lt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGE 189 (384)
.--|||.+.|.+|-. +.|| +++.|.++.++-+.+.-+ -.+|=..=+|
T Consensus 46 AD~VGCnl~CayCw~----y~r~~~~~rag~f~~P~eVaeRL~ei~K~~g--------------------~d~vRiSG~E 101 (228)
T COG5014 46 ADTVGCNLLCAYCWN----YFRNLRPKRAGDFLSPEEVAERLLEISKKRG--------------------CDLVRISGAE 101 (228)
T ss_pred CCCCCCCEEEHHHHH----HHHCCCCCCCCCCCCHHHHHHHHHHHHHHCC--------------------CCEEEEECCC
T ss_conf 031353312387666----6603872213021597999999999988558--------------------8689962898
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHH-----HHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCHH
Q ss_conf 4542899999960376845778775368885138741478-----86012565179984045511344412331257899
Q gi|254781120|r 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIA-----RVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLE 264 (384)
Q Consensus 190 Pl~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~I~-----~la~~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~ 264 (384)
|++--+.|+..|+++.+ +...+-|-|+.=+.+ .|+..+.+..-+|+...+++-=.+|--.+..| +.
T Consensus 102 P~l~~EHvlevIeLl~~--------~tFvlETNG~~~g~drslv~el~nr~nv~vRVsvKG~dpesF~kIT~asp~~-F~ 172 (228)
T COG5014 102 PILGREHVLEVIELLVN--------NTFVLETNGLMFGFDRSLVDELVNRLNVLVRVSVKGWDPESFEKITGASPEY-FR 172 (228)
T ss_pred CCCCHHHHHHHHHHCCC--------CEEEEEECCEEEECCHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHCCCHHH-HH
T ss_conf 64468999999986347--------6499975776883588899997137863999983579889989875689278-99
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHH-HHHHHHC---CCCCEEEE
Q ss_conf 999999999862589459999987269998889999-9999832---54531667
Q gi|254781120|r 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL-NLIKILK---GIPAKINL 315 (384)
Q Consensus 265 ~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~-~L~~ll~---~~~~~vNL 315 (384)
--++|++.... + +-+..- ...-+. +.||.. +|++-+. .+||.|..
T Consensus 173 ~QL~aLr~L~~-~-g~rf~p--A~~~~f--~~Ed~~k~Lak~Lgehp~~P~~iev 221 (228)
T COG5014 173 YQLKALRHLHG-K-GHRFWP--AVVYDF--FREDGLKELAKRLGEHPPIPCRIEV 221 (228)
T ss_pred HHHHHHHHHHH-C-CCEEEE--HHHHCC--CHHHHHHHHHHHHCCCCCCCCCEEE
T ss_conf 99999999984-6-716510--143203--5136689999875438999852455
No 46
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein; InterPro: IPR012840 This enzyme is a member of the radical-SAM family. It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, IPR009161 from INTERPRO) and presumably fulfils the identical function as NrdG , , which utilises S-adenosyl methionine, an iron-sulphur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centred radical in NrdD..
Probab=96.66 E-value=0.0026 Score=45.59 Aligned_cols=176 Identities=20% Similarity=0.285 Sum_probs=107.2
Q ss_pred CCCCCCEEEEEECCCCHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 34677338988406510048613224411102789899999999999972220344443434445458611014410145
Q gi|254781120|r 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 (384)
Q Consensus 109 p~~~r~T~CvSSQvGC~m~C~FCaTg~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmG 188 (384)
.|++.. .|+=---||+..|+||.=+.. +.--..++||-..-+ ...|+ +...-|..|||-| |
T Consensus 12 D~PG~~-a~~iF~~GCn~~CpyCHN~~~-~~~~~~~~~~~~e~~--~~~L~--------------~R~~ll~gVVitG-G 72 (220)
T TIGR02495 12 DYPGKL-AFTIFFQGCNLKCPYCHNSEL-LIPRKGSGEIELEEL--LEFLR--------------RRQGLLDGVVITG-G 72 (220)
T ss_pred EECCCE-EEEEEECCCCCCCCCCCCCCC-HHHHCCCCCCCHHHH--HHHHH--------------HCCCCEEEEEEEC-C
T ss_conf 318853-688870278899878888764-002005761027779--99987--------------3134210578728-7
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHH-HHHHHCC-CCCCEEEEEECCCCHHHHHHCCCCCCC-----
Q ss_conf 445428999999603768457787753688851387414-7886012-565179984045511344412331257-----
Q gi|254781120|r 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN-IARVGEE-IGVMLAISLHAVSNDLRNILVPINRKY----- 261 (384)
Q Consensus 189 EPl~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~-I~~la~~-~~~~LAiSLha~~~~~R~~lmPi~~~~----- 261 (384)
||++=.+++-.+++-+.+.-||.++ +-|.|.-|. +++|.++ +==..|+=+=||-+ .-.++.=..+.+
T Consensus 73 EptlQ~~eL~d~~~~v~~nlGf~vk-----LdTNG~~P~~L~~ll~~gLvD~va~D~Kap~~-~y~~~~G~~~~~~~~~t 146 (220)
T TIGR02495 73 EPTLQAGELGDFLREVRENLGFEVK-----LDTNGSNPRVLEELLEEGLVDYVAMDVKAPPE-KYGELYGREKNAAKKET 146 (220)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCEEE-----EECCCCCHHHHHHHHHCCCCCEEEEECCCCHH-HCCEEECCCCCCCCCCC
T ss_conf 5323677789999999986592785-----60678867899999860487578750147865-67400063321003532
Q ss_pred ------CH----HHHHHHHHHHHHHCCC-CEEEEEE--EEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf ------89----9999999999862589-4599999--872699988899999999832545
Q gi|254781120|r 262 ------PL----EMLIDACRHYPGLSNA-RRITFEY--VMLKGINDSPRDALNLIKILKGIP 310 (384)
Q Consensus 262 ------~l----~~l~~a~~~y~~~~~~-rrit~EY--vli~gvNDs~e~a~~L~~ll~~~~ 310 (384)
.- +.+.+.++- ...+.| --|-||. +...+.++..||+.+++.+++...
T Consensus 147 nisPsrtPe~l~~~~~~SlEi-l~~s~GCGGi~fE~RTTV~~~~~~Geed~~ei~~~i~~~~ 207 (220)
T TIGR02495 147 NISPSRTPEKLLKNILKSLEI-LLESGGCGGIEFELRTTVVRGLLDGEEDLAEIATRIKENG 207 (220)
T ss_pred CCCCCCCHHHHHHHHHHHHHH-HHHCCCCCCCCCEEECCCCHHHHCCCHHHHHHHHHHCCCC
T ss_conf 468775658999998755675-5424786886532445655254165278999997632244
No 47
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme; InterPro: IPR006467 This clade of sequences is closely related to MiaB, a modifier of isopentenylated adenosine-37 of certain eukaryotic and bacterial tRNAs (see IPR006463 from INTERPRO). Sequence alignments suggest that these sequences perform the same chemical transformation as MiaB, perhaps on a different (or differently modified) tRNA base substrate. This clade represents a subfamily that spans low GC Gram-positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium , , ..
Probab=96.55 E-value=0.049 Score=36.14 Aligned_cols=204 Identities=20% Similarity=0.299 Sum_probs=130.6
Q ss_pred CCCCCEEEEEECCCCHHCCCCC----CCCCCHHHCCCCHHHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 4677338988406510048613----22441110278989999999-999997222034444343444545861101441
Q gi|254781120|r 110 EKSRGTLCVSSQVGCSLTCSFC----YTGTQKLVRNLTAEEILLQV-LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 (384)
Q Consensus 110 ~~~r~T~CvSSQvGC~m~C~FC----aTg~~G~~RNLt~~EIv~Qv-~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVf 184 (384)
+.++.=.=|==|=||--.|+|| +=| .=.|....++|++|| .++.+...+- =+|.|=+
T Consensus 206 f~~~~RAFvKVQdGCn~~CsyC~IP~~RG--t~~RS~~~e~~~~~v~~Lv~~gy~Ev----------------VLTGvnl 267 (492)
T TIGR01579 206 FEERTRAFVKVQDGCNKFCSYCIIPFARG--TRSRSVPLEKILEQVKELVAKGYKEV----------------VLTGVNL 267 (492)
T ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHCCCEEE----------------EEEEECC
T ss_conf 02788625788758898844101403378--97641667899999999973775599----------------9840014
Q ss_pred ECCCCHH----HHHHHHHHHHHC-CCCCCCCCCCCCEEEEEECCC---CHHHHHH-H-C-CCCCCEEEEEECCCCHHHHH
Q ss_conf 0145445----428999999603-768457787753688851387---4147886-0-1-25651799840455113444
Q gi|254781120|r 185 MGMGEPL----CNFDNVKKSLSI-ASDSMGLSFSKRRITLSTSGF---VPNIARV-G-E-EIGVMLAISLHAVSNDLRNI 253 (384)
Q Consensus 185 MGmGEPl----~N~d~v~~ai~~-l~~~~g~~~~~r~ITvST~Gi---~p~I~~l-a-~-~~~~~LAiSLha~~~~~R~~ 253 (384)
=.=|+-+ .|+..++.-|.- +.+-. ||=+|..-. -+.|-++ + + .+-.+|=|||-|.+|..= +
T Consensus 268 g~Yg~d~~~~g~~L~~Ll~~i~~q~~g~~-------RiRlSS~~p~~~~~~l~~l~~s~~~l~PHlHlsLQSGsd~vL-k 339 (492)
T TIGR01579 268 GSYGDDLGENGSSLAKLLEQILKQIPGIE-------RIRLSSIDPEDIDEELLELIKSEKKLCPHLHLSLQSGSDRVL-K 339 (492)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCE-------EEEECCCCHHHHCHHHHHHHHCCCCCCCCCCEEEECCCHHHH-H
T ss_conf 44568887667608999999986468834-------676325776550489999973476416320000222773798-4
Q ss_pred HCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCC-CCCHHHHHHHHHHHCCCC-CEEEEEECCCCCC---CCCCC
Q ss_conf 123312578999999999998625894599999872699-988899999999832545-3166751277887---98868
Q gi|254781120|r 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI-NDSPRDALNLIKILKGIP-AKINLIPFNPWPG---CEYLC 328 (384)
Q Consensus 254 lmPi~~~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gv-NDs~e~a~~L~~ll~~~~-~~vNLIp~N~~~~---~~~~~ 328 (384)
.|- |+|.-+++++.+...-+.. ....|===+|=|. .-|.+|=+.=.++++.++ .+++.=||=|=|+ +.+..
T Consensus 340 rM~--R~Y~r~~~~~~v~~lr~~~--p~~~~gtD~IVGFP~E~eedFq~t~~~~~~~~~~~~HiFpyS~R~~T~A~~m~~ 415 (492)
T TIGR01579 340 RMR--RKYTRDDFLKLVQKLRSVR--PDYAFGTDVIVGFPGESEEDFQETLRIVKEIEFSGLHIFPYSARPGTPASAMDD 415 (492)
T ss_pred HCC--CCCCHHHHHHHHHHHHHCC--CCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC
T ss_conf 248--7887689999999998507--763037603740888988999999999852660213354268843281204787
Q ss_pred ---CCHHHHHHHHHHHHH
Q ss_conf ---898999999999998
Q gi|254781120|r 329 ---SDQKDIVTFSECIKR 343 (384)
Q Consensus 329 ---~~~~~i~~F~~~L~~ 343 (384)
-+...+.+=.+.|+.
T Consensus 416 rf~v~~~~~KeR~~~L~~ 433 (492)
T TIGR01579 416 RFKVPETIKKERVKRLKE 433 (492)
T ss_pred CCCCCCHHHHHHHHHHHH
T ss_conf 442761158899999999
No 48
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein; InterPro: IPR014191 Members of this entry represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR, see IPR012837 from INTERPRO). Members of this entry are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of these proteins as RNR activating proteins is partly from pairing with the candidate RNR and further supported by the finding that upstream of these operons are examples of a conserved regulatory element that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes ..
Probab=96.50 E-value=0.0033 Score=44.79 Aligned_cols=92 Identities=24% Similarity=0.367 Sum_probs=62.5
Q ss_pred EECCCCCCCEEEEEECCCCHHC--CCCCCCCCC--HHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-
Q ss_conf 3023467733898840651004--861322441--11027898999999999999722203444434344454586110-
Q gi|254781120|r 106 VYIPEKSRGTLCVSSQVGCSLT--CSFCYTGTQ--KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS- 180 (384)
Q Consensus 106 Vlip~~~r~T~CvSSQvGC~m~--C~FCaTg~~--G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~- 180 (384)
|+=-.++-.|||++-| ||+.+ |+=|.+--. -=.+++-+.|.++|.+. ++ ...||
T Consensus 8 VfqEvPde~~LA~~~~-GCp~~PKC~GCHS~~lW~~d~G~~Lt~e~~~~~l~--~y------------------~~~I~R 66 (165)
T TIGR02826 8 VFQEVPDEVSLAFNIS-GCPLGPKCKGCHSPELWHEDEGTPLTEEALAQLLD--KY------------------RSLITR 66 (165)
T ss_pred CEEECCCCEEEEEEEE-CCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHH--HH------------------CCCCCH
T ss_conf 0665087067877754-67877959888873111356798889899999998--74------------------000101
Q ss_pred -----EEEEECCCCHHH--HHHHHHHHHHCCCCC-CCCCCCCCEEEEEECCCC
Q ss_conf -----144101454454--289999996037684-577877536888513874
Q gi|254781120|r 181 -----NIVMMGMGEPLC--NFDNVKKSLSIASDS-MGLSFSKRRITLSTSGFV 225 (384)
Q Consensus 181 -----NiVfMGmGEPl~--N~d~v~~ai~~l~~~-~g~~~~~r~ITvST~Gi~ 225 (384)
=||||| ||||+ |-++++.-+.++... .+|. |.-=+|..
T Consensus 67 YFPK~Cv~FlG-GEPLAPw~~~~l~~Ll~~~k~~~~~L~------v~LYTG~~ 112 (165)
T TIGR02826 67 YFPKVCVLFLG-GEPLAPWEPEALLSLLKLVKEEHAGLK------VCLYTGRE 112 (165)
T ss_pred HHHHHEEEECC-CCCCCCCCHHHHHHHHHHHHHHCCCCE------EEEECCCC
T ss_conf 21002020047-898873376899999999997538866------88850885
No 49
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=96.23 E-value=0.091 Score=34.13 Aligned_cols=221 Identities=12% Similarity=0.098 Sum_probs=96.4
Q ss_pred EEEEECCCCCCCEEEEEECCCCHHCCCCCCCCCC-HHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 5443023467733898840651004861322441-110278989999999999997222034444343444545861101
Q gi|254781120|r 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ-KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 (384)
Q Consensus 103 IEsVlip~~~r~T~CvSSQvGC~m~C~FCaTg~~-G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~N 181 (384)
+-.|.|++-+ + |..+|.|||=-+. |--.=|+.+||++.+-.+... -.|-
T Consensus 11 ~~n~~In~TN---i-------C~~~C~fCaF~~~~~~a~~ls~eev~~~~~ea~~~--------------------G~tE 60 (336)
T PRK06245 11 SRNVFIPLTY---E-------CRNRCGYCTFRPDPGEASLLSPEEVREILERGQDA--------------------GCTE 60 (336)
T ss_pred ECCCCCCCCC---C-------CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC--------------------CCEE
T ss_conf 1862616775---4-------02688258674688756877999999999999976--------------------9839
Q ss_pred EEEECCCCHHHHHHHHHHHHHCCCC---CCCCCCCCCEE-----EEEECCCC--HHHHHHHCCCCCCEEEEEECCCCHHH
Q ss_conf 4410145445428999999603768---45778775368-----88513874--14788601256517998404551134
Q gi|254781120|r 182 IVMMGMGEPLCNFDNVKKSLSIASD---SMGLSFSKRRI-----TLSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLR 251 (384)
Q Consensus 182 iVfMGmGEPl~N~d~v~~ai~~l~~---~~g~~~~~r~I-----TvST~Gi~--p~I~~la~~~~~~LAiSLha~~~~~R 251 (384)
|-|.|=.-|=+.|+.-..-.+.--+ ++-..++..-+ .-+..|+. ..|++|.+ ....+-..+-+..+.++
T Consensus 61 vl~~gG~~P~~~~~~~~~l~~~~~~~~~~~~~~~~~~~le~gllph~n~G~ls~~el~~Lk~-v~asmG~mlE~~se~l~ 139 (336)
T PRK06245 61 ALFTFGEVPDESEEIREQLAEPGYSSWLEYLYDLCELALETGLLPHTNAGILSRAEMEALKP-VNASMGLMLEQTSPRLL 139 (336)
T ss_pred EEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC-CCCCCCCCCHHHHHHHH
T ss_conf 99805788663689999999707550778899985888763655223667678999998753-59766757123568988
Q ss_pred HHH---CCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEE--CCCCCCC
Q ss_conf 441---23312578999999999998625894--5999998726999888999999998325453166751--2778879
Q gi|254781120|r 252 NIL---VPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIP--FNPWPGC 324 (384)
Q Consensus 252 ~~l---mPi~~~~~l~~l~~a~~~y~~~~~~r--rit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp--~N~~~~~ 324 (384)
+.+ -|- |-|=.. ++.++.--+ - |= --|+=|=..+...|..+|...|.++-..-..---.|| |.|.++.
T Consensus 140 ~~~h~~~P~--K~~~~r-L~~ie~Ah~-l-gIptTatmL~G~gET~eeRi~hL~~IR~lq~~tGgfqefI~~~F~p~~~t 214 (336)
T PRK06245 140 ETVHRHSPG--KDPELR-LETIEWAGE-L-KIPFTTGLLIGIGETWEDRIESLEAIAELHERYGHIQEVIIQNFRPKPGI 214 (336)
T ss_pred HHHCCCCCC--CCHHHH-HHHHHHHHH-C-CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC
T ss_conf 763044898--788999-999999998-3-99722024520669999999999999998863497579950687789875
Q ss_pred CC---CCCCHHHHH---HHHHHHHHCCCEEEECCCCCCCCC
Q ss_conf 88---688989999---999999987987854158777100
Q gi|254781120|r 325 EY---LCSDQKDIV---TFSECIKRSGYSSPIRTPRGLDIL 359 (384)
Q Consensus 325 ~~---~~~~~~~i~---~F~~~L~~~Gi~~tiR~srG~DI~ 359 (384)
.+ ..|+..... +-.+++-.+-+++-+--..|.++.
T Consensus 215 ~m~~~~~~~~~e~l~~iAvARiiL~~~i~IQappnL~~~~~ 255 (336)
T PRK06245 215 PMENHPEPSPEEMPRVVALARLILPPDISIQVPPNLVDDTG 255 (336)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHH
T ss_conf 33469997999999999999996699857976986785578
No 50
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=95.96 E-value=0.058 Score=35.59 Aligned_cols=206 Identities=15% Similarity=0.196 Sum_probs=88.0
Q ss_pred CHHCCCCCCCCCC-HH--HCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHH
Q ss_conf 1004861322441-11--02789899999999999972220344443434445458611014410145445428999999
Q gi|254781120|r 124 CSLTCSFCYTGTQ-KL--VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKS 200 (384)
Q Consensus 124 C~m~C~FCaTg~~-G~--~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl~N~d~v~~a 200 (384)
|..+|+|||=.+. |- ---|+.+||++.+-.+... -+|-|-+.|==-|=+.|+....-
T Consensus 14 C~~~C~FCaF~r~~~~~~ay~ls~eei~~~~~ea~~~--------------------G~tEv~i~gG~~P~~~~~~~~~~ 73 (322)
T TIGR03550 14 CRNRCGYCTFRRPPGELEAALLSPEEVLEILRKGAAA--------------------GCTEALFTFGEKPEERYPEAREW 73 (322)
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC--------------------CCEEEEECCCCCHHHHHHHHHHH
T ss_conf 3176967885168999887747999999999999977--------------------98799964886800349999999
Q ss_pred HHCCCCCCC----CCCCCCE------EEEEECCCC--HHHHHHHC-C--CCCCEEEEEECCCCHHHHHHCCCCCCCCHHH
Q ss_conf 603768457----7877536------888513874--14788601-2--5651799840455113444123312578999
Q gi|254781120|r 201 LSIASDSMG----LSFSKRR------ITLSTSGFV--PNIARVGE-E--IGVMLAISLHAVSNDLRNILVPINRKYPLEM 265 (384)
Q Consensus 201 i~~l~~~~g----~~~~~r~------ITvST~Gi~--p~I~~la~-~--~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~ 265 (384)
++.+.-+.- ..++..- +--.+.|+. ..|++|.+ . +...+-..-....++.|..+-|- |.+-+.
T Consensus 74 l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~t~eel~~Lk~~~aglg~~~e~~ae~l~~~vr~~~~P~--K~~~~~ 151 (322)
T TIGR03550 74 LAEMGYDSTLEYLRELCELALEETGLLPHTNPGVMSRDELARLKPVNASMGLMLETTSERLCKGEAHYGSPG--KDPAVR 151 (322)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCC--CCHHHH
T ss_conf 998488617899999999999863356544767688999998763186266678888875322235677999--887999
Q ss_pred HHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCC----CEEEEEECC--CCCCCC---CCCCCHHHH--
Q ss_conf 999999998625894599999872699988899999999832545----316675127--788798---868898999--
Q gi|254781120|r 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP----AKINLIPFN--PWPGCE---YLCSDQKDI-- 334 (384)
Q Consensus 266 l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~----~~vNLIp~N--~~~~~~---~~~~~~~~i-- 334 (384)
++..+.--+ -.+-.-=.|+=|.-++.+|--+-...++.+. .---.||+| |-++.+ ...|+....
T Consensus 152 -l~i~~~Ah~----lGi~ttaTml~GhiEt~eeri~HL~~lR~lQdetggf~efIp~~F~p~~~~~~~~~~~~s~~e~Lr 226 (322)
T TIGR03550 152 -LETIEDAGR----LKIPFTTGILIGIGETREERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEEMLR 226 (322)
T ss_pred -HHHHHHHHH----CCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf -999999998----599615123420469999999999999987865296579962676689986455699989999999
Q ss_pred -HHHHHHHHHCCCEEEECCCCCC
Q ss_conf -9999999987987854158777
Q gi|254781120|r 335 -VTFSECIKRSGYSSPIRTPRGL 356 (384)
Q Consensus 335 -~~F~~~L~~~Gi~~tiR~srG~ 356 (384)
-+..+++-++-+++-.-...|.
T Consensus 227 ~iAvaRl~Ldn~~~Iqa~~~lg~ 249 (322)
T TIGR03550 227 TVAVARLILPPDISIQVPPNLNR 249 (322)
T ss_pred HHHHHHHHCCCCCEEEECCCCCH
T ss_conf 99999997599972860885675
No 51
>PRK08445 hypothetical protein; Provisional
Probab=95.82 E-value=0.056 Score=35.70 Aligned_cols=171 Identities=16% Similarity=0.169 Sum_probs=96.4
Q ss_pred CHHCCCCCCCCCCHHH---CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHH---HHHHHH
Q ss_conf 1004861322441110---2789899999999999972220344443434445458611014410145445---428999
Q gi|254781120|r 124 CSLTCSFCYTGTQKLV---RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL---CNFDNV 197 (384)
Q Consensus 124 C~m~C~FCaTg~~G~~---RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl---~N~d~v 197 (384)
|..+|+|||=.+..-. --|+.+||+..+-.+... .+|-|.+.|==.|= +=|.++
T Consensus 52 C~~~C~FCaF~r~~~~~~aY~ls~eei~~~~~~a~~~--------------------g~tEv~i~GG~~P~l~~~yY~~l 111 (348)
T PRK08445 52 CWVDCKFCAFYRHLKEEDAYILSFEEIDQKIEELLAI--------------------GGTQILFQGGVHPKLKIEWYENL 111 (348)
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC--------------------CCEEEEEECCCCCCCCHHHHHHH
T ss_conf 6548977757479999876227999999999999864--------------------98189982798999977799999
Q ss_pred HHHHHCCC-CCCCCCCCCCEEE--EEECCC--CHHHHHHHC----CCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHH
Q ss_conf 99960376-8457787753688--851387--414788601----25651799840455113444123312578999999
Q gi|254781120|r 198 KKSLSIAS-DSMGLSFSKRRIT--LSTSGF--VPNIARVGE----EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 (384)
Q Consensus 198 ~~ai~~l~-~~~g~~~~~r~IT--vST~Gi--~p~I~~la~----~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~ 268 (384)
+++|+--. +-.--++|+--|. -.++|+ ..-+.+|.+ .+|-.=| -=-+|+.|++|-| +|-+-++-++
T Consensus 112 ~r~ik~~~P~i~ihaft~~EI~~~a~~~~~s~~EvL~~Lk~AGL~slPGggA---EIl~d~VR~~I~p--~K~s~~~Wle 186 (348)
T PRK08445 112 VSHIAQKYPTITIHGFSAVEIDYIAKISKISLKEVLERLQAKGLSSIPGAGA---EILSDRVRDIIAP--KKLSSDRWLE 186 (348)
T ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCH---HHCCHHHHHHHCC--CCCCHHHHHH
T ss_conf 9999975775424279999999999981989999999999819887888662---6348899987488--8899999999
Q ss_pred HHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 999998625894599999872699988899999999832545316675127
Q gi|254781120|r 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFN 319 (384)
Q Consensus 269 a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N 319 (384)
..+.--++--.--.|.=|=-++..-|..+|...|-++-..-+--...||++
T Consensus 187 i~~~AH~lGi~ttaTMlyGhiEt~e~rv~HL~~lR~lQdeTgGF~~FIpl~ 237 (348)
T PRK08445 187 VHRQAHKIGMKSTATMMFGTVENDEEIIEHWEHIRDLQDETGGFRAFILWS 237 (348)
T ss_pred HHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 999999869964121362677999999999999999998619978998543
No 52
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E; InterPro: IPR011843 This entry describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.; GO: 0051539 4 iron 4 sulfur cluster binding, 0018189 pyrroloquinoline quinone biosynthetic process.
Probab=95.36 E-value=0.064 Score=35.25 Aligned_cols=182 Identities=20% Similarity=0.337 Sum_probs=115.6
Q ss_pred CHHCCCCCCCCCCHHHC---CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHH--HHH
Q ss_conf 10048613224411102---7898999999999999722203444434344454586110144101454454289--999
Q gi|254781120|r 124 CSLTCSFCYTGTQKLVR---NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD--NVK 198 (384)
Q Consensus 124 C~m~C~FCaTg~~G~~R---NLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl~N~d--~v~ 198 (384)
||+.|++|.== .-|.| =||+.|=++=+-.+++. | |=.+=|-| |||+.=-| +++
T Consensus 17 CPL~CPYCSNP-Lel~R~~~EL~T~~W~~Vl~qAa~l------------------G--vlqlHfSG-GEP~aR~DL~eLv 74 (363)
T TIGR02109 17 CPLQCPYCSNP-LELARRKAELTTEEWTDVLTQAAEL------------------G--VLQLHFSG-GEPLARPDLVELV 74 (363)
T ss_pred CCCCCCCCCCC-HHHHHHHCCCCHHHHHHHHHHHHHC------------------C--CEEEECCC-CCCCCCCCHHHHH
T ss_conf 88877798970-6888511468888999999999853------------------9--06751307-7666335779999
Q ss_pred HHHHCCCCCCCCCCCCCEEEEEECCC---CHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99603768457787753688851387---414788601256517998404551134441233125789999999999986
Q gi|254781120|r 199 KSLSIASDSMGLSFSKRRITLSTSGF---VPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275 (384)
Q Consensus 199 ~ai~~l~~~~g~~~~~r~ITvST~Gi---~p~I~~la~~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~y~~ 275 (384)
++-+ .+|+-- .+=|||| -+++..|++--=-+..||+-+++++.=++|==.-+ -.+.=+++++.- +
T Consensus 75 ~~A~------~LGlYt---NLITSGvGLt~~rl~~L~~aGLDHvQlSfQ~vd~~~a~~iaG~k~--A~~~Kl~~A~~v-~ 142 (363)
T TIGR02109 75 AHAR------RLGLYT---NLITSGVGLTEARLDALADAGLDHVQLSFQGVDEALADRIAGLKN--AFEQKLAVARAV-K 142 (363)
T ss_pred HHHH------HCCCCH---HHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHCCHHH--HHHHHHHHHHHH-H
T ss_conf 9997------758701---467763456799999997579857887641478788864125025--899999999999-9
Q ss_pred HCCCCEEEEEEEEECCCC-CCHHHHHHHHHHHCCCCCEEEEEECCCCCC--CCCCCCCHHHHHHHHHHH
Q ss_conf 258945999998726999-888999999998325453166751277887--988688989999999999
Q gi|254781120|r 276 LSNARRITFEYVMLKGIN-DSPRDALNLIKILKGIPAKINLIPFNPWPG--CEYLCSDQKDIVTFSECI 341 (384)
Q Consensus 276 ~~~~rrit~EYvli~gvN-Ds~e~a~~L~~ll~~~~~~vNLIp~N~~~~--~~~~~~~~~~i~~F~~~L 341 (384)
.. +-..|+..|+..+ | |..++.-+|+-=|.=-.+=|=-..|-=|.- ..=--|+.+.+++=.++.
T Consensus 143 ~~-g~PltLN~V~HR~-Ni~~i~~~i~La~~L~AdrvE~A~~QyYGWA~~NR~aLlPt~~Ql~~a~r~V 209 (363)
T TIGR02109 143 AA-GLPLTLNFVLHRH-NIDQIPEIIELAIELGADRVELATTQYYGWALLNRAALLPTREQLEEATRIV 209 (363)
T ss_pred HC-CCCEEEEHCCCCC-HHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 61-8981760200242-0213678999998638984888740202256774542489889999999999
No 53
>TIGR00238 TIGR00238 lysine 2,3-aminomutase YodO family protein; InterPro: IPR003739 This family represents essentially the whole of the Escherichia coli YjeK family and of some of its apparent orthologs. YodO in Bacillus subtilis, a family member which is a longer protein by an additional 100 residues, is characterised as a lysine 2,3-aminomutase with iron, sulphide and pyridoxal 5'-phosphate groups . The homologue, MJ0634 from M. jannaschii, is preceded by nearly 200 C-terminal residues. This family shows similarity to molybdenum cofactor biosynthesis protein MoaA and related proteins..
Probab=95.01 E-value=0.23 Score=31.21 Aligned_cols=203 Identities=15% Similarity=0.245 Sum_probs=117.8
Q ss_pred EEEEECCCCCCCEEEEEECCCCHHCCCCCCCCC--CHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 544302346773389884065100486132244--111027898999999999999722203444434344454586110
Q gi|254781120|r 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT--QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 (384)
Q Consensus 103 IEsVlip~~~r~T~CvSSQvGC~m~C~FCaTg~--~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~ 180 (384)
|..+.-. ....+.+...-||++.|.+|...- ..|......|.--.++-.+-.++.+. ..+.
T Consensus 122 ~p~~~~~--y~~~~~~~~~~~c~~~c~yc~~~w~~~~~~~~~~~g~p~~~~~~~~~~~~~~---------------~~~~ 184 (357)
T TIGR00238 122 VPGLTHR--YPNRALFLPKGGCAVNCRYCFRNWLVRHFPYKEGPGNPKKKWEAALDYIAEH---------------PELE 184 (357)
T ss_pred CCHHHHH--HHCEEEEEECCCCCHHHHHHHHCCHHCCCCCCCCCCCCHHHHHHHHHHHHHC---------------CCHH
T ss_conf 1024442--1001346641664022333332001100451003677367899999987404---------------1023
Q ss_pred EEEEECCCCHHHH----HHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCCCCCEEEEEECCCCHHHHHHCC
Q ss_conf 1441014544542----899999960376845778775368885138741478860125651799840455113444123
Q gi|254781120|r 181 NIVMMGMGEPLCN----FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVP 256 (384)
Q Consensus 181 NiVfMGmGEPl~N----~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~I~~la~~~~~~LAiSLha~~~~~R~~lmP 256 (384)
.++|.| |+|+.- .+-++..++-+.+-.++.++.|-..+...-+...+-.+.......+.++-|-.
T Consensus 185 ~~~~~g-gdp~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~---------- 253 (357)
T TIGR00238 185 EVLFSG-GDPLLLKDHELEWLLKELESIPHLEGLRIGTRLPVVIPQRITDELCELLGKFELPLLLVTHIN---------- 253 (357)
T ss_pred HHEEEC-CCCCCCCHHHHHHHHHHHHHCCCHHEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHEEECCC----------
T ss_conf 320107-876310057899999987533401002202322011004668999998753322110000024----------
Q ss_pred CCCCCCH-HHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCC------CCCCCCCC
Q ss_conf 3125789-9999999999862589459999987269998889999999983254531667512778------87988688
Q gi|254781120|r 257 INRKYPL-EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPW------PGCEYLCS 329 (384)
Q Consensus 257 i~~~~~l-~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N~~------~~~~~~~~ 329 (384)
..+.+ ++..+++.... .. +-.+.-+.++++|+||+.+-...|..-+... .++||--+ ....|..|
T Consensus 254 --~~~~~~~~~~~~~~~l~-~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----g~~pyy~~~~~~~~g~~~~~~~ 325 (357)
T TIGR00238 254 --HCNEITEEFAEAVEKLR-TV-GVTLLNQSVLLRGVNDSAPILAKLSDALFKV----GVLPYYLHLLDGVEGAGHFLVP 325 (357)
T ss_pred --CCHHCCHHHHHHHHHHH-HC-CCCCCCHHHHHHHHCCHHHHHHHHHHHHHHH----CCCHHHHHHHCHHHHHHHHHHH
T ss_conf --30110378999999887-52-6500001322111011157899988878763----0102322220001101122201
Q ss_pred CHHHHHHHHHHH
Q ss_conf 989999999999
Q gi|254781120|r 330 DQKDIVTFSECI 341 (384)
Q Consensus 330 ~~~~i~~F~~~L 341 (384)
..+..+.+....
T Consensus 326 ~~~~~~~~~~~~ 337 (357)
T TIGR00238 326 DAEALQIVKELA 337 (357)
T ss_pred HHHHHHHHHHHH
T ss_conf 678899998887
No 54
>KOG2876 consensus
Probab=94.80 E-value=0.16 Score=32.39 Aligned_cols=218 Identities=20% Similarity=0.304 Sum_probs=126.5
Q ss_pred EEEEECCCCHHCCCCC--CCCC--CHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHH
Q ss_conf 8988406510048613--2244--11102789899999999999972220344443434445458611014410145445
Q gi|254781120|r 116 LCVSSQVGCSLTCSFC--YTGT--QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191 (384)
Q Consensus 116 ~CvSSQvGC~m~C~FC--aTg~--~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl 191 (384)
+=+|----|.+.|.+| ++|. .-..+=|+..||+-=. ..+.. .+-|++=.--|||+
T Consensus 13 Lrislte~cnlrc~ycMpseg~~l~pk~~~lav~eilrl~----~lF~~-----------------qgv~knrLtggept 71 (323)
T KOG2876 13 LRISLTEKCNLRCQYCMPSEGVPLKPKRKLLAVSEILRLA----GLFAP-----------------QGVDKNRLTGGEPL 71 (323)
T ss_pred HHHHHHHCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHH----HHHHH-----------------HHHHHHHCCCCCCC
T ss_conf 1065552007312120120077576410000024467764----35667-----------------55015540578874
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCH--HHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 42899999960376845778775368885138741--4788601256517998404551134441233125789999999
Q gi|254781120|r 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP--NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 (384)
Q Consensus 192 ~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p--~I~~la~~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a 269 (384)
---|-|- -..-+.+-.| -|.+-|.|-|++- .+-++-+.---++-+||-. +.|.+.--+.++-....+.+.
T Consensus 72 Ir~d~~~-i~~g~~~l~g----Lks~~ITtng~vl~R~lp~lhkaglssiNiSldt---l~~aKfa~~~rr~g~v~V~~~ 143 (323)
T KOG2876 72 IRQDIVP-IVAGLSSLPG----LKSIGITTNGLVLARLLPQLHKAGLSSINISLDT---LVRAKFAKLTRRKGFVKVWAS 143 (323)
T ss_pred CCCCCCC-CCHHHHCCCH----HHHHCEECCCHHHHHHHHHHHHHCCCCHHHHHHH---HHHHHHHHHHHHCCHHHHHHH
T ss_conf 1046431-0144412300----1441501262267766178777243400035665---557777777631129999988
Q ss_pred HHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf 99998625894599999872699988899999999832545316675127788798868898999999999998798785
Q gi|254781120|r 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349 (384)
Q Consensus 270 ~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N~~~~~~~~~~~~~~i~~F~~~L~~~Gi~~t 349 (384)
++--.... .+.+-..-++.+|.|+.. .--|+.+-++.|.-|-.|.|=|..|..|+..+.-....-.+... +-....
T Consensus 144 iq~a~~lg-y~pvkvn~v~~k~~n~~e--i~Dfv~~tr~~p~DVrfIe~mpf~gn~~~t~slipy~e~l~li~-~~~d~~ 219 (323)
T KOG2876 144 IQLAIELG-YNPVKVNCVVMKGLNEDE--VFDFVLLTRMRPLDVRFIEFMPFDGNKWNTKSLIPYKEMLDLIV-KPWDFS 219 (323)
T ss_pred HHHHHHHC-CCCCCEEEEEEECCCCCC--CCCEEEECCCCCCCEEEEEECCCCCCCCCHHCCCCHHHHHHHHH-CCCCHH
T ss_conf 76776507-787412256763367870--23213306898754688994256787211101344889988772-678312
Q ss_pred ECC-------CCCCCCCCCCCCCH
Q ss_conf 415-------87771001120021
Q gi|254781120|r 350 IRT-------PRGLDILAACGQLK 366 (384)
Q Consensus 350 iR~-------srG~DI~aACGQL~ 366 (384)
+|- ++---|+++|||..
T Consensus 220 ~~l~~~~s~T~Ka~~i~g~~gqvs 243 (323)
T KOG2876 220 VRLPDEPSDTAKAYKIDGFQGQVS 243 (323)
T ss_pred HCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 017899874200212234131477
No 55
>PRK05927 hypothetical protein; Provisional
Probab=94.18 E-value=0.56 Score=28.28 Aligned_cols=195 Identities=17% Similarity=0.175 Sum_probs=105.8
Q ss_pred CHHCCCCCCCCCCHH---HCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCC---HHHHHHHH
Q ss_conf 100486132244111---027898999999999999722203444434344454586110144101454---45428999
Q gi|254781120|r 124 CSLTCSFCYTGTQKL---VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE---PLCNFDNV 197 (384)
Q Consensus 124 C~m~C~FCaTg~~G~---~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGE---Pl~N~d~v 197 (384)
|...|+|||=.+..= ---|+.+||+..+--+.+. .+|-|-+.|==- |++=|..+
T Consensus 55 C~~~C~FCaF~r~~~~~~ay~ls~eei~~~~~e~~~~--------------------G~tEv~i~GG~~P~l~~eyy~~l 114 (350)
T PRK05927 55 CKIDCTFCAFYRKPRSSDAYLLSFDEFRSLMQRYVSS--------------------GVKTVLLQGGVHPQLGIDYLEEL 114 (350)
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC--------------------CCCEEEEECCCCCCCCHHHHHHH
T ss_conf 6576934774258999875327999999999999866--------------------98389982688999986999999
Q ss_pred HHHHHCCC-CCCCCCCCCCEEE--EEECCCC--HHHHHHHC----CCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHH
Q ss_conf 99960376-8457787753688--8513874--14788601----25651799840455113444123312578999999
Q gi|254781120|r 198 KKSLSIAS-DSMGLSFSKRRIT--LSTSGFV--PNIARVGE----EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 (384)
Q Consensus 198 ~~ai~~l~-~~~g~~~~~r~IT--vST~Gi~--p~I~~la~----~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~ 268 (384)
++++.--- +-.--++|+--|. -..+|+. .-+.+|.+ .+|=.=| .=-+|+.|+.|-| .|.+-++-++
T Consensus 115 ~r~ik~~~P~i~ihafs~~Ei~~~a~~~g~s~~e~L~~Lk~AGL~slPGgGA---EIl~d~VR~~I~p--~K~s~~~Wl~ 189 (350)
T PRK05927 115 VRITVQEFPSLHPHFFSAVEIAHAAQVSGISTEQALQRLWDAGQRTIPGGGA---EILSERVRKIISP--KKMGPDGWIN 189 (350)
T ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCC---CCCCHHHHHHCCC--CCCCHHHHHH
T ss_conf 9999974888665669999999999885999999999999737676899875---0168777751488--8889999999
Q ss_pred HHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCC-------CCCCCCHH--HHHHHHH
Q ss_conf 99999862589459999987269998889999999983254531667512778879-------88688989--9999999
Q gi|254781120|r 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGC-------EYLCSDQK--DIVTFSE 339 (384)
Q Consensus 269 a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N~~~~~-------~~~~~~~~--~i~~F~~ 339 (384)
..+.--++.-+--.|.=|=-++..-|..+|...|-++=..-+--.-.||++=.|.. +..++..+ ++.+..+
T Consensus 190 i~~~AH~lGi~ttaTmlyGhiEt~e~ri~HL~~lR~lQdeTgGF~~FIpl~F~p~nt~l~~~~~~~~~~~~~Lr~~AvaR 269 (350)
T PRK05927 190 FHKLAHRLGFRSTATMMFGHVENPEDILLHLQTLRDAQDENPGFYSFIPWSYKPGNTALGRRVPQQASPELYYRILALAR 269 (350)
T ss_pred HHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 99999985997520246368799999999999999987650987999946765488746542788998457599999999
Q ss_pred HHHH
Q ss_conf 9998
Q gi|254781120|r 340 CIKR 343 (384)
Q Consensus 340 ~L~~ 343 (384)
+.-+
T Consensus 270 l~Ld 273 (350)
T PRK05927 270 IFLD 273 (350)
T ss_pred HHCC
T ss_conf 9706
No 56
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=93.70 E-value=0.079 Score=34.61 Aligned_cols=87 Identities=28% Similarity=0.398 Sum_probs=49.7
Q ss_pred CCEEEEEECCCCHHCCCCCCCCCC-HHHC-CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCH
Q ss_conf 733898840651004861322441-1102-78989999999999997222034444343444545861101441014544
Q gi|254781120|r 113 RGTLCVSSQVGCSLTCSFCYTGTQ-KLVR-NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 (384)
Q Consensus 113 r~T~CvSSQvGC~m~C~FCaTg~~-G~~R-NLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEP 190 (384)
|.++=+ -||+.+|+-|..-.. -|.. ..-..|..++++.. +.+. .-....|.|.| |||
T Consensus 18 R~~iw~---qGC~~~C~GC~Np~tw~~~~G~~~~~~~~~~ii~~---l~~~--------------~~~~~GvTisG-GEP 76 (154)
T PRK11121 18 RCTLFV---SGCVHQCPGCYNKSTWRLNSGHPFTKAMEDQIIAD---LNDT--------------RIKRQGLSLSG-GDP 76 (154)
T ss_pred EEEEEE---CCCCCCCCCCCCHHHCCCCCCEECHHHHHHHHHHH---HHHC--------------CCCCCCEEEEC-CCC
T ss_conf 999995---68877797999977858758977619999999998---7642--------------35547538868-882
Q ss_pred H--HHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 5--4289999996037684577877536888513874
Q gi|254781120|r 191 L--CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225 (384)
Q Consensus 191 l--~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~ 225 (384)
| .|.+++...++.+.... -++ .|-+-| |..
T Consensus 77 ~~q~~~~~l~~l~~~~k~~~-~~~---~I~~yT-Gyt 108 (154)
T PRK11121 77 LHPQNVPAILKLVKRVKAEC-PGK---DIWLWT-GYK 108 (154)
T ss_pred CCCCCHHHHHHHHHHHHHHC-CCC---CEEEEE-CCC
T ss_conf 65147999999999999758-998---499981-863
No 57
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=93.04 E-value=0.96 Score=26.55 Aligned_cols=204 Identities=20% Similarity=0.302 Sum_probs=117.5
Q ss_pred CCHHCCCCCCCCCCHHHCCC---------CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHH
Q ss_conf 51004861322441110278---------989999999999997222034444343444545861101441014544542
Q gi|254781120|r 123 GCSLTCSFCYTGTQKLVRNL---------TAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 (384)
Q Consensus 123 GC~m~C~FCaTg~~G~~RNL---------t~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl~N 193 (384)
=|+-+|.||--+..-+-++. +..+|+..+.... ..|--|| =||||.-
T Consensus 37 ~C~~~CfYCPvs~~r~gkdviyaNErpV~~~eDii~ea~~~~------------------a~GasiT------GGdPl~~ 92 (353)
T COG2108 37 LCNRSCFYCPVSDERKGKDVIYANERPVKSVEDIIEEAKLMD------------------ALGASIT------GGDPLLE 92 (353)
T ss_pred CCCCCCCCCCCCHHHCCCCCEEECCCCCCCHHHHHHHHHHHC------------------CCCCCCC------CCCHHHH
T ss_conf 668985257687776488633115631475788999999724------------------6665332------7874899
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHH---HHHHHC-CCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 8999999603768457787753688851387414---788601-256517998404551134441233125789999999
Q gi|254781120|r 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN---IARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 (384)
Q Consensus 194 ~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~---I~~la~-~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a 269 (384)
.+-+..-++.|.+..|-.+ ||-+=|.|..+. +++|++ .+. -|-.|-+ .|-.+ ..+.-+++
T Consensus 93 ieR~~~~ir~LK~efG~~f---HiHLYT~g~~~~~e~l~~L~eAGLD---EIRfHp~--------~~~~~--~~e~~i~~ 156 (353)
T COG2108 93 IERTVEYIRLLKDEFGEDF---HIHLYTTGILATEEALKALAEAGLD---EIRFHPP--------RPGSK--SSEKYIEN 156 (353)
T ss_pred HHHHHHHHHHHHHHHCCCE---EEEEEECCCCCCHHHHHHHHHCCCC---EEEECCC--------CCCCC--CCHHHHHH
T ss_conf 9999999999987635320---5998406656888999999867987---5994689--------72112--31899999
Q ss_pred HHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHC---CCCCEEEEEECCCC-----CCCCCCCCC---------HH
Q ss_conf 99998625894599999872699988899999999832---54531667512778-----879886889---------89
Q gi|254781120|r 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIPAKINLIPFNPW-----PGCEYLCSD---------QK 332 (384)
Q Consensus 270 ~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~---~~~~~vNLIp~N~~-----~~~~~~~~~---------~~ 332 (384)
++-- ... +.-|-+|--.+.|.-|.. .++++++- .--+.+|=.-||.. -+..|++++ .+
T Consensus 157 l~~A-~~~-g~dvG~EiPaipg~e~~i---~e~~~~~~~~~~~FlNiNELE~sE~N~~~l~~~gy~~~~~~~~av~GS~E 231 (353)
T COG2108 157 LKIA-KKY-GMDVGVEIPAIPGEEEAI---LEFAKALDENGLDFLNINELEFSENNYENLLERGYKISDDGSSAVAGSLE 231 (353)
T ss_pred HHHH-HHH-CCCCEEECCCCCCHHHHH---HHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHCCCEECCCCCCCCCCHHH
T ss_conf 9999-982-855104327886568899---99999987606653421004405211999986676132687554344589
Q ss_pred HHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 9999999999-879878541587771001120021025655465
Q gi|254781120|r 333 DIVTFSECIK-RSGYSSPIRTPRGLDILAACGQLKSLSKRIPKV 375 (384)
Q Consensus 333 ~i~~F~~~L~-~~Gi~~tiR~srG~DI~aACGQL~~~~~r~~~~ 375 (384)
....-.+.-. ..++.+..=.|.=.|. =||+++.+|..+.
T Consensus 232 ~~Lk~l~~~~~~~~l~vH~Css~~KDa----vQ~r~Rl~r~Akn 271 (353)
T COG2108 232 AALKVLKWAEENWDLTVHYCSSKFKDA----VQLRNRLKRMAKN 271 (353)
T ss_pred HHHHHHHHHHCCCCCEEEECCHHHHHH----HHHHHHHHHHHHH
T ss_conf 999999987515675489773566689----9998999999860
No 58
>PRK05926 hypothetical protein; Provisional
Probab=92.25 E-value=1.2 Score=25.83 Aligned_cols=169 Identities=11% Similarity=0.117 Sum_probs=95.1
Q ss_pred CHHCCCCCCCCCC-----HHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCC---HHHHHH
Q ss_conf 1004861322441-----11027898999999999999722203444434344454586110144101454---454289
Q gi|254781120|r 124 CSLTCSFCYTGTQ-----KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE---PLCNFD 195 (384)
Q Consensus 124 C~m~C~FCaTg~~-----G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGE---Pl~N~d 195 (384)
|..+|+|||=.+. |+ -|+.+||++.+--+. ..+|-|-+.|==- |++-|.
T Consensus 79 C~~~C~FCaF~r~~~~~~aY--~ls~eei~~~v~e~~---------------------~g~tEv~i~GG~hP~l~~~yY~ 135 (371)
T PRK05926 79 CDFNCTFCSFYAKPGDPKGW--FYTPDQLIQSIQEIK---------------------SPITETHIVAGCFPSCNLAYYE 135 (371)
T ss_pred HHCCCCCCCCCCCCCCCCCC--CCCHHHHHHHHHHHH---------------------CCCCEEEEECCCCCCCCHHHHH
T ss_conf 42679247763689997652--389999999999987---------------------5996899717889899869999
Q ss_pred HHHHHHHCCCCC-CCCCCCCCEEEE--EECCC--CHHHHHHHC----CCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHH
Q ss_conf 999996037684-577877536888--51387--414788601----256517998404551134441233125789999
Q gi|254781120|r 196 NVKKSLSIASDS-MGLSFSKRRITL--STSGF--VPNIARVGE----EIGVMLAISLHAVSNDLRNILVPINRKYPLEML 266 (384)
Q Consensus 196 ~v~~ai~~l~~~-~g~~~~~r~ITv--ST~Gi--~p~I~~la~----~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l 266 (384)
+++++++--.-. .--+||+--|.- ..+|+ ..-+.+|.+ .+|=.=|== -+|+.|+.|-| .|-+-++-
T Consensus 136 ~l~~~ik~~~P~v~ihaft~~EI~~~a~~~~~s~~EvL~~Lk~AGL~SlPGgGAEI---l~d~VR~~I~p--~K~~~~~W 210 (371)
T PRK05926 136 ELFSKIKENFPDIHIKALTAIEYAYLSKLDNLPVREVLQTLKIAGLDSIPGGGAEI---LVDEIRETLAP--GRLSSQDF 210 (371)
T ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHH---CCHHHHHHHCC--CCCCHHHH
T ss_conf 99999997589874144889999999998099999999999983877788873243---47789997588--98989999
Q ss_pred HHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 999999986258945999998726999888999999998325453166751277
Q gi|254781120|r 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 (384)
Q Consensus 267 ~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N~ 320 (384)
++..+.--++--+--.|.=|=-++..-|..+|...|-++=..-..-.-.||+.=
T Consensus 211 lei~~~AH~lGi~t~ATMmyGHiEt~~~rv~HL~~lR~lQdeTgGF~~FIpl~F 264 (371)
T PRK05926 211 LEIHKTAHSLGIPSNATMLCYHRETPEDIVTHMSKLRDLQDETLGFKNFILLKF 264 (371)
T ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 999999998699752046524669999999999999998875299429972442
No 59
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=91.98 E-value=1.3 Score=25.61 Aligned_cols=213 Identities=18% Similarity=0.181 Sum_probs=103.3
Q ss_pred EEEEECCCCCCCEEEEEECCCCHHCCCCCCCCCCH---HHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 54430234677338988406510048613224411---102789899999999999972220344443434445458611
Q gi|254781120|r 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK---LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 (384)
Q Consensus 103 IEsVlip~~~r~T~CvSSQvGC~m~C~FCaTg~~G---~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i 179 (384)
|-.+.|++-+ + |.-+|+||+=-... =---|+.+||.+++-.+.+. -+
T Consensus 58 v~n~~in~TN---~-------C~~~C~fCaF~~~~~~~~~y~Ls~eeI~~~~~~~~~~--------------------G~ 107 (370)
T COG1060 58 VVNRNINYTN---I-------CVNDCTFCAFYRKPGDPKAYTLSPEEILEEVREAVKR--------------------GI 107 (370)
T ss_pred EEEECCCCCH---H-------HCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC--------------------CC
T ss_conf 9752578532---3-------3179972623457888655316999999999999875--------------------98
Q ss_pred CEEEEECCCCHHHH---HHHHHHHHHC-CCC-------CCCCCCCCCEEEEEECCCCHHHHHHHC---C-CCCCEEEEEE
Q ss_conf 01441014544542---8999999603-768-------457787753688851387414788601---2-5651799840
Q gi|254781120|r 180 SNIVMMGMGEPLCN---FDNVKKSLSI-ASD-------SMGLSFSKRRITLSTSGFVPNIARVGE---E-IGVMLAISLH 244 (384)
Q Consensus 180 ~NiVfMGmGEPl~N---~d~v~~ai~~-l~~-------~~g~~~~~r~ITvST~Gi~p~I~~la~---~-~~~~LAiSLh 244 (384)
+.|-|-|==-|=.+ |...+++|+- .-+ +..+..-.+..-.|. ...+++|.+ + .+..-|= .
T Consensus 108 ~Evli~gG~~p~~~~~y~~~~~~~ik~~~p~~~i~a~s~~ei~~~~~~~~~s~---~E~l~~Lk~aGldsmpg~~ae-i- 182 (370)
T COG1060 108 TEVLIVGGEHPELSLEYYEELFRTIKEEFPDLHIHALSAGEILFLAREGGLSY---EEVLKRLKEAGLDSMPGGGAE-I- 182 (370)
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHCCCCCH---HHHHHHHHHCCCCCCCCCCEE-E-
T ss_conf 69998057687743679999999998857303430167888679874368889---999999997698767475411-4-
Q ss_pred CCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECC--CCC
Q ss_conf 455113444123312578999999999998625894599999872699988899999999832545316675127--788
Q gi|254781120|r 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFN--PWP 322 (384)
Q Consensus 245 a~~~~~R~~lmPi~~~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N--~~~ 322 (384)
-.++.|..+-| .|-+-++=+++.+.--+..=.---|.-|--+++.-|..+|+..+-+|=...+.-...||.| |-.
T Consensus 183 -l~e~vr~~~~p--~K~~~~~wle~~~~Ah~lGI~~tatml~Gh~E~~ed~~~hl~~ir~lQ~~~gg~~~fI~~~f~p~~ 259 (370)
T COG1060 183 -LSEEVRKIHCP--PKKSPEEWLEIHERAHRLGIPTTATMLLGHVETREDRIDHLEHIRDLQDETGGFQEFIPLRFRPEN 259 (370)
T ss_pred -CHHHHHHHHCC--CCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCC
T ss_conf -16779986379--889999999999999976998420347873288899999999999999985895799805545788
Q ss_pred CC----CC-CCCCHHHHHHHHHHHHHCCCEEEECCC
Q ss_conf 79----88-688989999999999987987854158
Q gi|254781120|r 323 GC----EY-LCSDQKDIVTFSECIKRSGYSSPIRTP 353 (384)
Q Consensus 323 ~~----~~-~~~~~~~i~~F~~~L~~~Gi~~tiR~s 353 (384)
+. .. .++..+.+..+.--.--.+..++.+.+
T Consensus 260 ~~~~~~~~~~~~~~~~l~~iAiaRi~l~~~i~~~~a 295 (370)
T COG1060 260 GPLPAEVVPEASLEQDLKAIALARIFLDNNISNIQA 295 (370)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 876666789899899999999999970676542417
No 60
>PRK09234 fbiC FO synthase; Reviewed
Probab=91.32 E-value=0.74 Score=27.39 Aligned_cols=182 Identities=17% Similarity=0.188 Sum_probs=98.3
Q ss_pred CCCEEEEEECC----CCHHCCCCCCCCCCHHH---CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 77338988406----51004861322441110---278989999999999997222034444343444545861101441
Q gi|254781120|r 112 SRGTLCVSSQV----GCSLTCSFCYTGTQKLV---RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 (384)
Q Consensus 112 ~r~T~CvSSQv----GC~m~C~FCaTg~~G~~---RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVf 184 (384)
+..|..|.-.+ =|..+|+|||=.+..-. --|+.+||...+--+... -.|-|-+
T Consensus 524 D~VTyVvNRNINyTNVC~~~C~FCAF~r~~~~~~aY~ls~eeI~~r~~EA~~~--------------------GaTEV~i 583 (846)
T PRK09234 524 DDVTYVVNRNINFTNICYTGCRFCAFAQRKGDADAYSLSLDEVADRAWEAWVA--------------------GATEVCM 583 (846)
T ss_pred CEEEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHC--------------------CCEEEEE
T ss_conf 84799840676388775517973514478899876118999999999999976--------------------9879983
Q ss_pred ECCCC---HHHHHHHHHHHHHCCC-CCCCCCCCCCEEE--EEECCCC--HHHHHHHC----CCCCCEEEEEECCCCHHHH
Q ss_conf 01454---4542899999960376-8457787753688--8513874--14788601----2565179984045511344
Q gi|254781120|r 185 MGMGE---PLCNFDNVKKSLSIAS-DSMGLSFSKRRIT--LSTSGFV--PNIARVGE----EIGVMLAISLHAVSNDLRN 252 (384)
Q Consensus 185 MGmGE---Pl~N~d~v~~ai~~l~-~~~g~~~~~r~IT--vST~Gi~--p~I~~la~----~~~~~LAiSLha~~~~~R~ 252 (384)
.|==- |+.-|..++++|+--. +-.--+||+--|. -.++|+. .-+.+|.+ .+|=.=|== -+|+.|.
T Consensus 584 qGGihP~l~~~~Y~di~r~iK~~~P~ihihAFSp~EI~~~A~~~g~s~~E~L~~LkeAGL~SlPGggAEI---L~d~VR~ 660 (846)
T PRK09234 584 QGGIDPELPGTGYADLVRAVKARVPSMHVHAFSPMEIANGATRSGLSIREWLTALREAGLDTIPGTAAEI---LDDEVRW 660 (846)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHH---CCHHHHH
T ss_conf 4787989987899999999998689870450899999999998299999999999980977799974132---5879999
Q ss_pred HHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 412331257899999999999862589459999987269998889999999983254531667512
Q gi|254781120|r 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318 (384)
Q Consensus 253 ~lmPi~~~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~ 318 (384)
.|-| .|-+-++-++..+.--+.--+---|.=|=-++..-+..+|...|-++-..-+--.-.||+
T Consensus 661 ~Icp--~K~~~~~Wlev~~~AH~lGl~TtATMmyGHvEt~e~rv~HL~~lR~lQdeTGGFteFIPL 724 (846)
T PRK09234 661 VLTK--GKLPTAEWIEVVTTAHEVGLRSSSTMMYGHVDTPRHWVAHLRVLRDIQDRTGGFTEFVPL 724 (846)
T ss_pred HHCC--CCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEC
T ss_conf 7688--888899999999999985997521243567799999999999999999875995599746
No 61
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=90.63 E-value=1.7 Score=24.68 Aligned_cols=118 Identities=15% Similarity=0.149 Sum_probs=81.3
Q ss_pred EEEEEECCCCHHHHHH-CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 7998404551134441-233125789999999999986258945999998726999888999999998325453166751
Q gi|254781120|r 239 LAISLHAVSNDLRNIL-VPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIP 317 (384)
Q Consensus 239 LAiSLha~~~~~R~~l-mPi~~~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp 317 (384)
|-|-+-|++.++=+++ ++.+--++.+.-.+.+.+-...=++-||.+.-+. |.-.|+.++-+....++.....|.|-.
T Consensus 145 l~V~~daa~~~~~e~v~~~s~s~~S~e~~~~~l~~~~~~~~k~rv~ihliV--glGesD~~~ve~~~~v~~~g~~v~Lfa 222 (339)
T COG2516 145 LGVAEDAANEELFEKVRKTSGSPHSWERYWEFLEKVAEAFGKGRVGIHLIV--GLGESDKDIVETIKRVRKRGGIVSLFA 222 (339)
T ss_pred HHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEE--CCCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 357887507778999874158987188899999999998546774515796--048756899999999985586489998
Q ss_pred CCCCCCCC---CCCCCHHH---HHHHHHHHHHCCCEE---EECCCCCCCCC
Q ss_conf 27788798---86889899---999999999879878---54158777100
Q gi|254781120|r 318 FNPWPGCE---YLCSDQKD---IVTFSECIKRSGYSS---PIRTPRGLDIL 359 (384)
Q Consensus 318 ~N~~~~~~---~~~~~~~~---i~~F~~~L~~~Gi~~---tiR~srG~DI~ 359 (384)
|-|..+.. +++++.++ ++.|. +|-.+|..- ..-.++|+=|+
T Consensus 223 f~P~~gt~me~r~~~pve~Yrk~q~a~-yli~~G~v~~~~~~fde~g~lI~ 272 (339)
T COG2516 223 FTPLKGTQMENRKPPPVERYRKIQVAR-YLIGNGEVDLEDFEFDEFGNLID 272 (339)
T ss_pred ECCCCCCCCCCCCCCCHHHHHHHHHHH-HHHHCCCCCHHHCCCCCCCCEEC
T ss_conf 646556644578998689999999999-99734865554404532135103
No 62
>PRK05409 hypothetical protein; Provisional
Probab=89.15 E-value=2.2 Score=23.87 Aligned_cols=121 Identities=16% Similarity=0.238 Sum_probs=72.8
Q ss_pred EEEECC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCC----HHHHHHHCCCC-----CCEEEEEECCCCHHH
Q ss_conf 441014-54454289999996037684577877536888513874----14788601256-----517998404551134
Q gi|254781120|r 182 IVMMGM-GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGEEIG-----VMLAISLHAVSNDLR 251 (384)
Q Consensus 182 iVfMGm-GEPl~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~----p~I~~la~~~~-----~~LAiSLha~~~~~R 251 (384)
=-||++ |.|+.-++.+..-.-+..+ |.++|- =|..++- ..+++|++..+ =+|++|-+. ...=
T Consensus 37 EN~~~~gg~~~~~L~~i~e~~Pv~~H--Gv~LSl----Gs~~~ld~~~L~~l~~l~~~~~~~~~SeHL~~s~~~--g~~l 108 (283)
T PRK05409 37 ENYMGAGGKPLAQLRAIRERYPLSLH--GVSLSL----GGAAPLDKDHLKRLKALADRYQPALVSEHLAWSSHG--GHHL 108 (283)
T ss_pred CCCCCCCCCHHHHHHHHHHHCCEEEE--CCEEEC----CCCCCCCHHHHHHHHHHHHHHCCCCEECCEEEECCC--CCCC
T ss_conf 22037799779999999960985530--121214----788989999999999999985863110413565069--8230
Q ss_pred HHHCCCCCCC-CHHHHHHHHHHHHHHCCCCEEEEE----EEEECCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 4412331257-899999999999862589459999----9872699988899999999832545316
Q gi|254781120|r 252 NILVPINRKY-PLEMLIDACRHYPGLSNARRITFE----YVMLKGINDSPRDALNLIKILKGIPAKI 313 (384)
Q Consensus 252 ~~lmPi~~~~-~l~~l~~a~~~y~~~~~~rrit~E----Yvli~gvNDs~e~a~~L~~ll~~~~~~v 313 (384)
..|+|+-..- .+..+.+-++..+..- +|++.+| |+-+.+ +...+++-|.++++.-.|.+
T Consensus 109 ~dLLPlP~T~eal~~v~~ri~~vQd~L-~r~lllEN~s~Y~~~~~--~~m~E~eFl~~l~~~tgcgL 172 (283)
T PRK05409 109 YDLLPLPYTEEALDHVAERIDQVQDIL-GRPLLLENPSSYLAFPD--SEMSEWEFLNEVAERTGCGL 172 (283)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHH-CCCEEEECHHHHCCCCC--CCCCHHHHHHHHHHHCCCEE
T ss_conf 435776778999999999999999985-99858716687547887--88799999999998639719
No 63
>PRK01254 hypothetical protein; Provisional
Probab=88.72 E-value=2.4 Score=23.66 Aligned_cols=189 Identities=15% Similarity=0.188 Sum_probs=103.5
Q ss_pred CEEEEEECCCCHHCCCCCCC-CCC-HHHCCCCHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCCCC-----------CCCC
Q ss_conf 33898840651004861322-441-11027898999999999999722203-4444343444545-----------8611
Q gi|254781120|r 114 GTLCVSSQVGCSLTCSFCYT-GTQ-KLVRNLTAEEILLQVLLARSLLGDFP-GCEDIEGMVIPSV-----------GRKI 179 (384)
Q Consensus 114 ~T~CvSSQvGC~m~C~FCaT-g~~-G~~RNLt~~EIv~Qv~~~~~~l~~~~-~~~~~~~~~~~~~-----------~~~i 179 (384)
.-.-|.|.=||-=||.||+- --+ -...+=|.+-|+..+-.++..+.++. ...+.....++=- ..+=
T Consensus 372 IkfSv~~~RGCfGgCsFCaIt~HQGR~IqSRS~eSIl~E~~~i~~k~p~FkG~IsDvGGPTANMy~~~C~~~~~~~~C~r 451 (742)
T PRK01254 372 IKFSVNIMRGCFGGCSFCSITEHEGRIIQSRSEESIINEIEAIRDKVPGFTGVISDLGGPTANMYRLGCKSPKAEQTCRR 451 (742)
T ss_pred EEEEEEECCCCCCCCCEEEEEECCCCEEEECCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHCCCCCCCCHHCCCCCC
T ss_conf 12343134854457841322301686334327899999999999648998677635887136543154798110078999
Q ss_pred CEEEEECCCCHHH----HHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCC--------HHHHHHHCC-CCCCEEEEEECC
Q ss_conf 0144101454454----289999996037684577877536888513874--------147886012-565179984045
Q gi|254781120|r 180 SNIVMMGMGEPLC----NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--------PNIARVGEE-IGVMLAISLHAV 246 (384)
Q Consensus 180 ~NiVfMGmGEPl~----N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~--------p~I~~la~~-~~~~LAiSLha~ 246 (384)
..-||=..=.-|. -|-++++.++-+ -|-+++-|+ |||- .-+++|.+. ..=.|-|-=-..
T Consensus 452 ~sCl~P~iC~nL~~dH~~~i~Llrk~R~l-------pGVKkVfI~-SGiRyDLa~~d~eylkELv~hHVsGqLKVAPEH~ 523 (742)
T PRK01254 452 LSCVYPDICPHLDTDHSPTIDLYRRARDL-------KGIKKILIA-SGVRYDLAVEDPEYVKELVTHHVGGYLKIAPEHT 523 (742)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHCC-------CCCCEEEEC-CCHHHHHHHCCHHHHHHHHHHHCCCCEEECCCCC
T ss_conf 77899877888878809999999998628-------986555531-2054555533889999999873687066576546
Q ss_pred CCHHHHHHC-CCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 511344412-331257899999999999862589459999987269998889999999983254531
Q gi|254781120|r 247 SNDLRNILV-PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312 (384)
Q Consensus 247 ~~~~R~~lm-Pi~~~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~ 312 (384)
.+..=+..| |-.. .+++..+..++|.+...++.-.+-|.+-..=..+.+|+.+|+.+++....+
T Consensus 524 ~~~vL~~M~KP~~~--~y~rF~~~F~~~sk~~GK~QyLiPYfisaHPG~t~~Dm~~LA~~lk~~~~~ 588 (742)
T PRK01254 524 EEGPLSKMMKPGMG--SYDRFKELFDKYSKEAGKEQYLIPYFISAHPGTTDEDMVNLALWLKKNRFR 588 (742)
T ss_pred CHHHHHHHCCCCHH--HHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 85899986299868--999999999999998589703687787068998999999999999973999
No 64
>PRK00955 hypothetical protein; Provisional
Probab=87.75 E-value=2.7 Score=23.24 Aligned_cols=180 Identities=16% Similarity=0.219 Sum_probs=96.6
Q ss_pred EEEEECCCCHHCCCCCCCC-C-CHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHH--
Q ss_conf 8988406510048613224-4-11102789899999999999972220344443434445458611014410145445--
Q gi|254781120|r 116 LCVSSQVGCSLTCSFCYTG-T-QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL-- 191 (384)
Q Consensus 116 ~CvSSQvGC~m~C~FCaTg-~-~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl-- 191 (384)
.-|.|.=||-=||.|||-. - --+..+=|..-|+..+-.+.+.-+..+...+..+..+ |.--|+=..++
T Consensus 293 fSit~hRGCfGgCsFCaIt~HQGr~I~sRS~~SIl~E~~~~~~~p~FkG~IsDvGGPTA--------Nmy~~~C~~~~~~ 364 (599)
T PRK00955 293 FSITSHRGCFGGCSFCAITFHQGRFIQSRSKESILREAKELTQMPDFKGYIHDVGGPTA--------NFRKMACKKQEKC 364 (599)
T ss_pred HEEEECCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHCCCCCEEECCCCCCCH--------HHCCCCCCCHHHC
T ss_conf 30102476256782102201178703444889999999999738898778713898246--------5430647980202
Q ss_pred --------------HH-------HHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCH----------HHHHHHCC-CCCCE
Q ss_conf --------------42-------899999960376845778775368885138741----------47886012-56517
Q gi|254781120|r 192 --------------CN-------FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP----------NIARVGEE-IGVML 239 (384)
Q Consensus 192 --------------~N-------~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p----------~I~~la~~-~~~~L 239 (384)
-| |-++++.++-+ -|-+|+-|+ |||-= -+++|.+. ..=.|
T Consensus 365 g~C~~~~Cl~P~~C~nL~~dh~~~~~LLrk~r~l-------pgVKkvfi~-SGiRyDl~l~d~~~~yl~eL~~~HvsGqL 436 (599)
T PRK00955 365 GACKNKQCLFPKPCKNLDVDHTEYLDLLRKVRKL-------PGVKKVFIR-SGIRYDYLLHDKNDEFFKELCEHHVSGQL 436 (599)
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC-------CCCCEEEEC-CHHHHHHHCCCCCHHHHHHHHHHHCCCEE
T ss_conf 8899967899988889878838999999998548-------997677741-22655555136886999999977078706
Q ss_pred EEE-EECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 998-40455113444123312578999999999998625894599999872699988899999999832545316
Q gi|254781120|r 240 AIS-LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313 (384)
Q Consensus 240 AiS-Lha~~~~~R~~lmPi~~~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~v 313 (384)
-|- =|..+.-++..-=|-.. -+++..+..+++.+..+++.-.+-|.+-..=-.+.+|+.+|+.+++.+..+.
T Consensus 437 KVAPEH~~~~VL~~M~KP~~~--~~~~F~~~F~~~~k~~Gk~QylvPY~issHPGct~~dm~~La~~lk~~~~~p 509 (599)
T PRK00955 437 KVAPEHISDRVLKYMGKPSRE--VYDKFVKKFDRINKKLGKKQFLVPYLMSSHPGSTLEDAIELAEYLKDLGYQP 509 (599)
T ss_pred EECCCCCCHHHHHHHCCCCHH--HHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCH
T ss_conf 757754683788974799818--9999999999999985897304777881699989999999999999739997
No 65
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=86.86 E-value=3 Score=22.89 Aligned_cols=196 Identities=19% Similarity=0.150 Sum_probs=112.9
Q ss_pred CHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHH---H-HHHHH
Q ss_conf 1004861322441110278989999999999997222034444343444545861101441014544542---8-99999
Q gi|254781120|r 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN---F-DNVKK 199 (384)
Q Consensus 124 C~m~C~FCaTg~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl~N---~-d~v~~ 199 (384)
|.+||.+|.---.+-...++..+|+.|+..+-...+.. .++. -|-.---|-=|+- - +....
T Consensus 61 ~~~gC~MCgY~~d~~~~~vs~E~l~~qfd~~~~k~~~~-------------~~~~--~vkIFTSGSFLD~~EVP~e~R~~ 125 (358)
T COG1244 61 REGGCYMCGYPADSAGEPVSEENLINQFDEAYSKYEGK-------------FDEF--VVKIFTSGSFLDPEEVPREARRY 125 (358)
T ss_pred CCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCC-------------CCCC--EEEEECCCCCCCHHHCCHHHHHH
T ss_conf 05872242655466889898899999999999972244-------------7875--49997156658924488799999
Q ss_pred HHHCCCCCCCCCCCCCEEEEEE-CCC-----CHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 9603768457787753688851-387-----4147886012565179984045511344412331257899999999999
Q gi|254781120|r 200 SLSIASDSMGLSFSKRRITLST-SGF-----VPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY 273 (384)
Q Consensus 200 ai~~l~~~~g~~~~~r~ITvST-~Gi-----~p~I~~la~~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~y 273 (384)
-++.+...+. -.++.|-| .-. +..|.+..++..+.+||-|-++||++|.. -|||.++.++.++|+..-
T Consensus 126 Il~~is~~~~----v~~vvvESRpE~I~eE~l~e~~~il~gk~~EvaIGLETanD~ire~--sINKGftF~df~~A~~~i 199 (358)
T COG1244 126 ILERISENDN----VKEVVVESRPEFIREERLEEITEILEGKIVEVAIGLETANDKIRED--SINKGFTFEDFVRAAEII 199 (358)
T ss_pred HHHHHHHCCC----EEEEEEECCCHHCCHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHH--HHHCCCCHHHHHHHHHHH
T ss_conf 9999752366----0278760471012789999999860895389997124474889987--651388689999999999
Q ss_pred HHHCCCCEEEEEEEEECCCCCCHH----HHHHHHHHHCCCCCEEEEEECCCC------------CCCCCCCCCHHHHHHH
Q ss_conf 862589459999987269998889----999999983254531667512778------------8798868898999999
Q gi|254781120|r 274 PGLSNARRITFEYVMLKGINDSPR----DALNLIKILKGIPAKINLIPFNPW------------PGCEYLCSDQKDIVTF 337 (384)
Q Consensus 274 ~~~~~~rrit~EYvli~gvNDs~e----~a~~L~~ll~~~~~~vNLIp~N~~------------~~~~~~~~~~~~i~~F 337 (384)
+.. ---+-.|+|+|-+==|.. |+..=+.-+++. .+-|-+||+ ....|+||-.=.+.+.
T Consensus 200 -r~~--g~~vktYlllKP~FlSE~eAI~D~i~Si~~~~~~---~d~iSinptnVqKgTlvE~lw~~g~YRPPwLWSivEV 273 (358)
T COG1244 200 -RNY--GAKVKTYLLLKPPFLSEKEAIEDVISSIVAAKPG---TDTISINPTNVQKGTLVEKLWRRGLYRPPWLWSIVEV 273 (358)
T ss_pred -HHC--CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC---CCEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf -974--9751578883165347688999999999974367---8758844542213109999997378789557799999
Q ss_pred HHHHHHCCC
Q ss_conf 999998798
Q gi|254781120|r 338 SECIKRSGY 346 (384)
Q Consensus 338 ~~~L~~~Gi 346 (384)
....++.+-
T Consensus 274 L~~~~~~~~ 282 (358)
T COG1244 274 LREAKKTGP 282 (358)
T ss_pred HHHHHHCCC
T ss_conf 999985088
No 66
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=86.48 E-value=3.1 Score=22.74 Aligned_cols=275 Identities=16% Similarity=0.213 Sum_probs=153.8
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHH-CCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCE
Q ss_conf 58998999999998699854577558999999987179996783-34788999998620225787023465314544303
Q gi|254781120|r 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKW 88 (384)
Q Consensus 10 ~~ls~~EL~~~l~~~G~p~~~~~fRa~QI~~wiy~k~v~~f~~M-tnLpk~lR~~L~e~~~i~~l~iv~~~~S~DGT~K~ 88 (384)
..++.++++..+.+ ..+.+|-+.+-+.. .+++++ .=|+-+.-+.|.+-+.. +..=|.++
T Consensus 8 ~~~~~~~~~~~~~~---------~t~~dV~~aL~k~~-l~~~d~~~LLsp~a~~~lE~ma~~----------A~~lt~~~ 67 (371)
T PRK09240 8 RQLDWDDIRLRIYS---------KTAADVERALNKDK-LDLEDLMALLSPAAEPYLEEMAQR----------AQALTRQR 67 (371)
T ss_pred HHCCCHHHHHHHHC---------CCHHHHHHHHHCCC-CCHHHHHHHCCCCCHHHHHHHHHH----------HHHHHHHH
T ss_conf 83880789999854---------99999999971579-998999988697478899999999----------99999987
Q ss_pred EEECCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCHHCCCCC-CCCCCHHHC-CCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 7752477778981554430234677338988406510048613-224411102-78989999999999997222034444
Q gi|254781120|r 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC-YTGTQKLVR-NLTAEEILLQVLLARSLLGDFPGCED 166 (384)
Q Consensus 89 L~~l~d~~~~dg~~IEsVlip~~~r~T~CvSSQvGC~m~C~FC-aTg~~G~~R-NLt~~EIv~Qv~~~~~~l~~~~~~~~ 166 (384)
- |+ +|.+.. -+-+|. =|.=+|.+| ....+.+.| -||.+||...+-.+.+.
T Consensus 68 f----------G~---~I~Lfa----PLYlSN--~C~N~C~YCGf~~~N~i~R~~Ls~eEI~~E~~ai~~~--------- 119 (371)
T PRK09240 68 F----------GN---TISLYT----PLYLSN--LCANDCTYCGFSMSNKIKRKTLDEEEIEREMAAIKKL--------- 119 (371)
T ss_pred C----------CC---EEEEEE----CHHHHC--CCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHC---------
T ss_conf 3----------98---589985----044022--2177887589867787630028999999999999976---------
Q ss_pred CCCCCCCCCCCCCCEEEEECCCC-H-HHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCC-CHHHHHHHCCCCCCEEEEE
Q ss_conf 34344454586110144101454-4-5428999999603768457787753688851387-4147886012565179984
Q gi|254781120|r 167 IEGMVIPSVGRKISNIVMMGMGE-P-LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF-VPNIARVGEEIGVMLAISL 243 (384)
Q Consensus 167 ~~~~~~~~~~~~i~NiVfMGmGE-P-l~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi-~p~I~~la~~~~~~LAiSL 243 (384)
| +.+| +|=+|| | ....|-+..+++.+... + ++|+|...-+ +..-++|.+----.+.+=-
T Consensus 120 ---------G--~k~I-LLvtGE~~~~~~~~Yi~~~v~~ik~~----f--~~v~iev~Pl~~eeY~~L~~aG~d~~~vyQ 181 (371)
T PRK09240 120 ---------G--FEHI-LLVTGEHEAKVGVDYIRRALPLAREY----F--SSVAIEVQPLSEEEYAELVELGLDGVTVYQ 181 (371)
T ss_pred ---------C--CCEE-EEECCCCCCCCCHHHHHHHHHHHHHH----C--CCEEEEECCCCHHHHHHHHHCCCCEEEEEE
T ss_conf ---------9--5238-85405787769889999999999975----6--740799525998999999985998699960
Q ss_pred ECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCC-------CCEEEEE
Q ss_conf 045511344412331257899999999999862589459999987269998889999999983254-------5316675
Q gi|254781120|r 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI-------PAKINLI 316 (384)
Q Consensus 244 ha~~~~~R~~lmPi~~~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~-------~~~vNLI 316 (384)
-.-+.++-.++=|..+|-+..-=+++.++-. ..+-+.|.+- .|=|++|=-.|+-.++--+..+ +..|.+=
T Consensus 182 ETY~~~~Y~~lHp~G~K~dy~~RL~a~eRa~-~aGi~~vgiG--aLlGL~dwr~e~~~~~~Ha~~L~~~y~~~~~siS~P 258 (371)
T PRK09240 182 ETYNPATYAKHHLRGPKQDFFYRLETPERAA-RAGIRKIGLG--ALLGLSDWRTDALMTALHLRYLQRKYWRARYSISFP 258 (371)
T ss_pred HHCCHHHHHHHCCCCCCCCCHHHCCCHHHHH-HCCCCEECEE--EEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 3259999998588998545254523788898-7599703611--022654689999999999999998779987576357
Q ss_pred ECCCCCCCCCCCC---CHHHHHHHHH----HHHHCCCEEEECCCC
Q ss_conf 1277887988688---9899999999----999879878541587
Q gi|254781120|r 317 PFNPWPGCEYLCS---DQKDIVTFSE----CIKRSGYSSPIRTPR 354 (384)
Q Consensus 317 p~N~~~~~~~~~~---~~~~i~~F~~----~L~~~Gi~~tiR~sr 354 (384)
+.-|..| .|.+| +++...++.- .+-..|+..+-|.|.
T Consensus 259 RlrP~~g-~~~p~~~vsD~~l~q~i~a~Rl~~P~~gi~lSTRE~~ 302 (371)
T PRK09240 259 RLRPCTG-GFEPKSIVSDRQLVQLICAFRLFLPDVEISLSTRESP 302 (371)
T ss_pred CCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCH
T ss_conf 5336889-9889865788999999999998665556168647898
No 67
>PRK11425 N-acetylgalactosamine-specific PTS system transporter subunit IIB; Provisional
Probab=84.27 E-value=3.9 Score=22.02 Aligned_cols=111 Identities=17% Similarity=0.204 Sum_probs=67.1
Q ss_pred CCEEEEEECCCCHHHHHHC----CCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 5179984045511344412----331257899999999999862589459999987269998889999999983254531
Q gi|254781120|r 237 VMLAISLHAVSNDLRNILV----PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312 (384)
Q Consensus 237 ~~LAiSLha~~~~~R~~lm----Pi~~~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~ 312 (384)
.=+.++=.+++|+.+..+| |-+-+..+-.+-++++.+.+...+.+++ ++.+ ++++|.+|++---.++ .
T Consensus 30 ~IiVvdD~~A~d~~~k~~l~ma~P~gvk~~i~~v~~ai~~~~~~~~~~~v~---ll~k----~~~d~~~l~~~g~~i~-~ 101 (157)
T PRK11425 30 LVLVANDEVAEDPVQQNLMEMVLAEGIAVRFWTLQKVIDNIHRAADRQKIL---LVCK----TPADFLTLVKGGVPVN-R 101 (157)
T ss_pred EEEEECCHHHCCHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHCCCCCCEEE---EEEC----CHHHHHHHHHCCCCCC-E
T ss_conf 999974135079999999984089986699976999999875468771699---9989----9999999997699988-8
Q ss_pred EEEEECCCCCCCC----CCCCCHHHHHHHHHHHHHCCCEEEECCCCCC
Q ss_conf 6675127788798----8688989999999999987987854158777
Q gi|254781120|r 313 INLIPFNPWPGCE----YLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 (384)
Q Consensus 313 vNLIp~N~~~~~~----~~~~~~~~i~~F~~~L~~~Gi~~tiR~srG~ 356 (384)
||+=.....+|.. .-.-+++.+++|.+ |.+.|+.+.+|..-..
T Consensus 102 lNvG~~~~~~g~~~i~~~v~l~~ee~~~lk~-l~~~Gv~v~~Q~vP~d 148 (157)
T PRK11425 102 INVGNMHYANGKQQIAKTVSVDAGDIAAFND-LKAAGVECFVQGVPTE 148 (157)
T ss_pred EEECCCCCCCCCEEEECCEEECHHHHHHHHH-HHHCCCEEEEEECCCC
T ss_conf 9989873688977982635438999999999-9977986999989599
No 68
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein; InterPro: IPR012837 This enzyme is a member of the radical-SAM protein and utilises S-adenosyl methionine, an iron-sulphur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centred radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, IPR009161 from INTERPRO). The two components form an alpha-2/beta-2 heterodimer.; GO: 0043365 [formate-C-acetyltransferase]-activating enzyme activity, 0051539 4 iron 4 sulfur cluster binding, 0005737 cytoplasm.
Probab=83.20 E-value=1.6 Score=24.87 Aligned_cols=83 Identities=28% Similarity=0.454 Sum_probs=49.0
Q ss_pred CCEEEEEECCCCHHCCCCCC---CCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 73389884065100486132---244111027898999999999999722203444434344454586110144101454
Q gi|254781120|r 113 RGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 (384)
Q Consensus 113 r~T~CvSSQvGC~m~C~FCa---Tg~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGE 189 (384)
|.++=| .||.-.|.=|. |=..---.-.| .+.+++|+ ++|.+.+ ..+..|-|-| ||
T Consensus 17 R~slfv---aGC~H~C~GC~N~~TW~~~~G~~~t-~~~~~~i~---~~l~~~~--------------~~~~G~tlsG-GD 74 (158)
T TIGR02491 17 RVSLFV---AGCKHHCEGCFNKETWNFNGGEEFT-EELEKEII---RDLNDNP--------------ILIDGLTLSG-GD 74 (158)
T ss_pred EEEEEE---CCCCCCCCCCCCCCCCCCCCCCCCC-HHHHHHHH---HHHCCCC--------------CEEEEEEECC-CC
T ss_conf 899860---4760388888783555767894203-68899999---9851288--------------1663014318-88
Q ss_pred HHH--HHHHHHHHHHCCCCCCCCCCCCCEEEEEE
Q ss_conf 454--28999999603768457787753688851
Q gi|254781120|r 190 PLC--NFDNVKKSLSIASDSMGLSFSKRRITLST 221 (384)
Q Consensus 190 Pl~--N~d~v~~ai~~l~~~~g~~~~~r~ITvST 221 (384)
||+ |.+.++..++.+... ++.+-|=+.|
T Consensus 75 PL~~~N~~~~~~l~k~~k~~----~P~kdIW~wT 104 (158)
T TIGR02491 75 PLYPANVEELIELVKKIKAE----LPEKDIWLWT 104 (158)
T ss_pred CCCCCCHHHHHHHHHHHHHH----CCCCCEEEEC
T ss_conf 88724436899999999985----7899689830
No 69
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=83.15 E-value=2.6 Score=23.31 Aligned_cols=87 Identities=16% Similarity=0.069 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEC-CCCCC-------------CCCCCC
Q ss_conf 9999999999862589459999987269998889999999983254531667512-77887-------------988688
Q gi|254781120|r 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF-NPWPG-------------CEYLCS 329 (384)
Q Consensus 264 ~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~-N~~~~-------------~~~~~~ 329 (384)
..+++++..|.....++|+.+ - -.++++-.|++++..+...+=.+-. ...+. .+..--
T Consensus 284 ~r~~d~~~d~~~~l~gkrvai-----~---~~~~~~~~l~~~L~elG~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~v~ 355 (428)
T cd01965 284 GRLLDAMLDSHFYLGGKRVAI-----A---GDPDLLLGLSRFLLEMGAEPVAAVTGTDNPPFEKRMELLASLEGIPAEVV 355 (428)
T ss_pred HHHHHHHHHHHHHCCCCEEEE-----E---CCCHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf 999999999998607978999-----8---88188999999999859956799981799247788998766507996399
Q ss_pred CHHHHHHHHHHHHHCCCEEEECCCCCCCC
Q ss_conf 98999999999998798785415877710
Q gi|254781120|r 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 (384)
Q Consensus 330 ~~~~i~~F~~~L~~~Gi~~tiR~srG~DI 358 (384)
.......+.+.+.+.+....+=.|++..+
T Consensus 356 ~~~D~~~le~~i~~~~~dliig~s~~~~~ 384 (428)
T cd01965 356 FVGDLWDLESLAKEEPVDLLIGNSHGRYL 384 (428)
T ss_pred ECCCHHHHHHHHHHCCCCEEEECHHHHHH
T ss_conf 76999999999974799999978578999
No 70
>TIGR02190 GlrX-dom Glutaredoxin-family domain; InterPro: IPR011906 Glutaredoxins , , , also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system . Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond . It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain..
Probab=81.64 E-value=0.38 Score=29.53 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=15.6
Q ss_pred CEEEEEECCCCHHCCCCCCCCCCHHHC
Q ss_conf 338988406510048613224411102
Q gi|254781120|r 114 GTLCVSSQVGCSLTCSFCYTGTQKLVR 140 (384)
Q Consensus 114 ~T~CvSSQvGC~m~C~FCaTg~~G~~R 140 (384)
-.+-|=| +.||+||+-+|.-|.-
T Consensus 8 ~~V~vfT----KpGCPFC~~AK~~L~~ 30 (79)
T TIGR02190 8 ESVSVFT----KPGCPFCAKAKAVLKE 30 (79)
T ss_pred CEEEEEE----CCCCCHHHHHHHHHHH
T ss_conf 7048984----5989644667889883
No 71
>TIGR00423 TIGR00423 conserved hypothetical protein TIGR00423; InterPro: IPR005244 This entry describes a family of conserved hypothetical proteins with no known function. .
Probab=81.01 E-value=3.7 Score=22.22 Aligned_cols=149 Identities=21% Similarity=0.331 Sum_probs=84.8
Q ss_pred CHHCCCCCC---CCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEC-------C-CCHHH
Q ss_conf 100486132---244111027898999999999999722203444434344454586110144101-------4-54454
Q gi|254781120|r 124 CSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG-------M-GEPLC 192 (384)
Q Consensus 124 C~m~C~FCa---Tg~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMG-------m-GEPl~ 192 (384)
|.-.|+||| +-+++=-==||.+||..-|--+-+. + .|-|.+-| . |--|+
T Consensus 15 C~~~C~FCAF~~~~k~~~~Y~Ls~eEI~~Kv~ea~~~-----G---------------~tE~~iQGGlnP~~~~nGssl~ 74 (331)
T TIGR00423 15 CVGKCKFCAFRRREKDKDAYVLSLEEILRKVKEAVAK-----G---------------ATEICIQGGLNPQLDINGSSLE 74 (331)
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-----C---------------CEEEEEECCCCCCCCCCCCHHH
T ss_conf 2324796331134689888140779999999999971-----9---------------8278852342788764541499
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHH------------H-HHHHCCCC-CCEEEEEEC-----CCCHHHHH
Q ss_conf 28999999603768457787753688851387414------------7-88601256-517998404-----55113444
Q gi|254781120|r 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN------------I-ARVGEEIG-VMLAISLHA-----VSNDLRNI 253 (384)
Q Consensus 193 N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~------------I-~~la~~~~-~~LAiSLha-----~~~~~R~~ 253 (384)
=|.+|+++|+--.-|+| .|++- |+.|. | +.+.+.++ -.| =||=. -+|+.|++
T Consensus 75 yy~~l~~~Ik~~~pPyG------~~hiH--afSp~Ev~f~A~~~~~~~e~EvL~~LK~aGL-~SmPGtgAEILdD~vRr~ 145 (331)
T TIGR00423 75 YYEELFRAIKQEFPPYG------DVHIH--AFSPMEVYFLAKNEGLSIEKEVLKRLKKAGL-DSMPGTGAEILDDSVRRK 145 (331)
T ss_pred HHHHHHHHHHHCCCCCC------CEEEE--CCCHHHHHHHHHHCCCCHHHHHHHHHHHHCC-CCCCCCCEEECCHHHHHH
T ss_conf 99999999974178965------24761--4686899999986189788999999888503-567776226530335875
Q ss_pred HCCCCCCCCHHHHHHHHHHHHHHCCCCE--EEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 1233125789999999999986258945--999998726999888999999998
Q gi|254781120|r 254 LVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKI 305 (384)
Q Consensus 254 lmPi~~~~~l~~l~~a~~~y~~~~~~rr--it~EYvli~gvNDs~e~a~~L~~l 305 (384)
|=| +|-+=++=++..+..-+ - |-+ -|.=|==++.--|..+|...|=++
T Consensus 146 IcP--~K~~s~eWlev~~~AH~-~-GiptTATMMfGHve~~~h~v~HL~rir~i 195 (331)
T TIGR00423 146 ICP--NKLSSDEWLEVIKTAHR-L-GIPTTATMMFGHVEEPEHRVEHLLRIRKI 195 (331)
T ss_pred HCC--CCCCHHHHHHHHHHHHH-C-CCCCCCHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 477--98872789999999986-6-69621011235527678899999999875
No 72
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=80.58 E-value=5.3 Score=21.06 Aligned_cols=210 Identities=17% Similarity=0.225 Sum_probs=127.5
Q ss_pred CCHHCCCCCCC-CCCH--HHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHH
Q ss_conf 51004861322-4411--10278989999999999997222034444343444545861101441014544542899999
Q gi|254781120|r 123 GCSLTCSFCYT-GTQK--LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199 (384)
Q Consensus 123 GC~m~C~FCaT-g~~G--~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl~N~d~v~~ 199 (384)
=|.=+|.+|.= ..+. -.+-||.+||...+-.+.+. + -++| ++.-|--......|-+..
T Consensus 93 ~C~N~C~YCGF~~~Nk~i~Rk~Lt~eEi~~E~~al~~~-G----------------~kri--lLvtGE~p~~~~~~Yi~~ 153 (471)
T PRK09613 93 YCVNNCVYCGFRRSNKELKRKKLTQEEIREEVKALESM-G----------------HKRL--ALVAGEHPVNCDIDYILE 153 (471)
T ss_pred CCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-C----------------CCEE--EEEECCCCCCCCHHHHHH
T ss_conf 33678753787477877763378999999999999976-9----------------7318--987146888798899999
Q ss_pred HHHCCCCCCCCCCCCCEEEEEECCC-CHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 9603768457787753688851387-414788601256517998404551134441233125789999999999986258
Q gi|254781120|r 200 SLSIASDSMGLSFSKRRITLSTSGF-VPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN 278 (384)
Q Consensus 200 ai~~l~~~~g~~~~~r~ITvST~Gi-~p~I~~la~~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~y~~~~~ 278 (384)
+++++.+-.--+-+-|||.|--.-+ ++.-++|.+--=-.+.+==-.=+.+.-.++-|...|-+..-=++|.++-. ..+
T Consensus 154 ~i~~iy~~~~~~g~IrrvnVei~Pl~~eeY~~L~~aGigt~~vfQETYh~~tY~~~Hp~GpK~dy~~RL~a~dRA~-~AG 232 (471)
T PRK09613 154 SIKTIYSTKNGNGEIRRVNVNIAPTTVENYKKLKEAGIGTYQLFQETYHKPTYEKMHPAGPKSNYDWRLTAMDRAM-EAG 232 (471)
T ss_pred HHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHCCCCEEEEEEEECCHHHHHHHCCCCCCCCCHHHCCCHHHHH-HCC
T ss_conf 9999987524678533688994479869999999869996999863078878998587898656333415788898-759
Q ss_pred CCEEEEEEEEECCCCCCHHHHHHHHHHHCCC-------CCEEEEEECCCCCCCCC--CC---CCHHHHHHHHHHHH----
Q ss_conf 9459999987269998889999999983254-------53166751277887988--68---89899999999999----
Q gi|254781120|r 279 ARRITFEYVMLKGINDSPRDALNLIKILKGI-------PAKINLIPFNPWPGCEY--LC---SDQKDIVTFSECIK---- 342 (384)
Q Consensus 279 ~rrit~EYvli~gvNDs~e~a~~L~~ll~~~-------~~~vNLIp~N~~~~~~~--~~---~~~~~i~~F~~~L~---- 342 (384)
-+.|.+- .|=|++|=-.|+-.|+--+..+ +..|-+=+..|..|+++ .+ .|++...+....++
T Consensus 233 i~dVGiG--aLlGL~dwr~e~~~l~~Ha~~Le~~yg~g~hTIS~PRlrPa~g~~~~~~pp~~VsD~~f~qiiaa~RL~vP 310 (471)
T PRK09613 233 IDDVGIG--VLFGLYDYRFEVLGLLMHAEHLEERFGVGPHTISVPRLEPALGSDLSENPPYLVSDEDFKKIVAILRLAVP 310 (471)
T ss_pred CCEECCH--HEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 9713600--20265368999999999999999975999856636754368999766789986798999999999998565
Q ss_pred HCCCEEEECCCC
Q ss_conf 879878541587
Q gi|254781120|r 343 RSGYSSPIRTPR 354 (384)
Q Consensus 343 ~~Gi~~tiR~sr 354 (384)
..|+..+-|.|-
T Consensus 311 ~tGiilSTRE~~ 322 (471)
T PRK09613 311 YTGMILSTRESA 322 (471)
T ss_pred CCCCEEECCCCH
T ss_conf 457368537998
No 73
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=79.78 E-value=5.6 Score=20.88 Aligned_cols=242 Identities=14% Similarity=0.244 Sum_probs=131.9
Q ss_pred HHHHCCCCCCCC-EEEEEECCCCCCCEEEE--CCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCHHCCCCCCC---CCC
Q ss_conf 986202257870-23465314544303775--247777898155443023467733898840651004861322---441
Q gi|254781120|r 63 LLNQHFSIIYPE-IVDEKISCDGTRKWLLR--FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT---GTQ 136 (384)
Q Consensus 63 ~L~e~~~i~~l~-iv~~~~S~DGT~K~L~~--l~d~~~~dg~~IEsVlip~~~r~T~CvSSQvGC~m~C~FCaT---g~~ 136 (384)
.+.+.+++..-+ -|.+..++.|-.+.-.+ ..+..+.-| -|..+-| -.|+--| ||.+.|-||.- .+.
T Consensus 72 ~~Le~C~lCerrCgVnR~~~~kG~C~v~~~~~vas~flH~G--EE~~Lvp---SgTVFFs---gCnfrCVfCQNwdISq~ 143 (335)
T COG1313 72 RILEKCTLCERRCGVNRLEGEKGFCRVKEKPYVASEFLHFG--EEPPLVP---SGTVFFS---GCNFRCVFCQNWDISQF 143 (335)
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCC--CCCCCCC---CCEEEEC---CCCEEEEEECCCCCCCC
T ss_conf 88513674630046253347776211676002310222257--6776568---7407964---76058997557652336
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCE
Q ss_conf 11027898999999999999722203444434344454586110144101454454289999996037684577877536
Q gi|254781120|r 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216 (384)
Q Consensus 137 G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl~N~d~v~~ai~~l~~~~g~~~~~r~ 216 (384)
|--+..++.+...-+...++. -..||-|-| |+|-.|..-++.+++++..+ +.
T Consensus 144 ~~g~~v~~e~La~i~~~~~~~--------------------GakNvN~Vg-g~Ptp~lp~Ile~l~~~~~~----iP--- 195 (335)
T COG1313 144 GIGKEVTPEDLAEIILELRRH--------------------GAKNVNFVG-GDPTPHLPFILEALRYASEN----IP--- 195 (335)
T ss_pred CCCEEECHHHHHHHHHHHHHH--------------------CCCCEEECC-CCCCCCHHHHHHHHHHHHCC----CC---
T ss_conf 788075699999999999982--------------------576210058-99987538999999997427----98---
Q ss_pred EEEE-ECCCC-HHHHHHHCC-CCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECC-C
Q ss_conf 8885-13874-147886012-565179984045511344412331257899999999999862589459999987269-9
Q gi|254781120|r 217 ITLS-TSGFV-PNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG-I 292 (384)
Q Consensus 217 ITvS-T~Gi~-p~I~~la~~-~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~y~~~~~~rrit~EYvli~g-v 292 (384)
.|. +.|.. +.+-++.+. .++.|. -+-=.||+--.++=-+-+=| +-+..+...-.+.- | -+-+--.++.| +
T Consensus 196 -vvwNSnmY~s~E~l~lL~gvVDiyL~-DfKYgNdeca~kySkvp~Y~--eVv~rn~~~~~~~~-g-~~iiRHLVlPghl 269 (335)
T COG1313 196 -VVWNSNMYMSEETLKLLDGVVDIYLP-DFKYGNDECAEKYSKVPNYW--EVVTRNILEAKEQV-G-GLIIRHLVLPGHL 269 (335)
T ss_pred -EEEECCCCCCHHHHHHHHCCCEEEEC-CCCCCCHHHHHHHHCCCCHH--HHHHHHHHHHHHHC-C-CEEEEEEECCCCH
T ss_conf -79706874489999986260204304-32468889999860589468--99889999999742-7-6588887348842
Q ss_pred CC-CHHHHHHHHHHHCCCCCEEEEE-ECCCC------CCCCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf 98-8899999999832545316675-12778------879886889899999999999879878
Q gi|254781120|r 293 ND-SPRDALNLIKILKGIPAKINLI-PFNPW------PGCEYLCSDQKDIVTFSECIKRSGYSS 348 (384)
Q Consensus 293 ND-s~e~a~~L~~ll~~~~~~vNLI-p~N~~------~~~~~~~~~~~~i~~F~~~L~~~Gi~~ 348 (384)
-| +..-.+-+++.+ |....||+. .|-|. |+.. ++.+.+.+++-.++-++.|+.-
T Consensus 270 ecCTkpI~~wiae~~-g~~~~vNiM~QY~P~ykA~eypeI~-R~lt~eE~e~a~~~a~~~gl~~ 331 (335)
T COG1313 270 ECCTKPILRWIAENL-GNDVRVNIMFQYRPEYKAEEYPEIN-RRLTREEYEKALEYAEKLGLTN 331 (335)
T ss_pred HHCCHHHHHHHHHHC-CCCEEEEEHHHCCCHHHHHHCHHHC-CCCCHHHHHHHHHHHHHCCCCE
T ss_conf 232589999999758-9870587532216235544244433-6589999999999999749740
No 74
>TIGR01515 branching_enzym 1,4-alpha-glucan branching enzyme; InterPro: IPR006407 This entry represents the core region of the glycogen branching enzymes, which are responsible for the transfer of chains of approximately seven alpha(1,4)-linked glucosyl residues to other similar chains (in new alpha-(1,6) linkages) in the biosynthesis of glycogen . The branching enzyme is responsible for the degree of alpha(1,6) branch linkages found in polysaccharides .; GO: 0003844 14-alpha-glucan branching enzyme activity, 0005978 glycogen biosynthetic process.
Probab=76.88 E-value=6.8 Score=20.29 Aligned_cols=58 Identities=22% Similarity=0.347 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHCCCC-CEEEEEECCCCC--CC-CCCCC----------CHHHHHHHHHHHHHCCCEEEECCC
Q ss_conf 899999999832545-316675127788--79-88688----------989999999999987987854158
Q gi|254781120|r 296 PRDALNLIKILKGIP-AKINLIPFNPWP--GC-EYLCS----------DQKDIVTFSECIKRSGYSSPIRTP 353 (384)
Q Consensus 296 ~e~a~~L~~ll~~~~-~~vNLIp~N~~~--~~-~~~~~----------~~~~i~~F~~~L~~~Gi~~tiR~s 353 (384)
-|=|++|+-.+|.+. .||-|+|.|++| || +|+.+ +.+...-|.+.+..+||.|.|=.=
T Consensus 151 ~eL~~~L~pYvK~~GFTHiELLPv~EHPFDGSWGYQ~TGyYAPTsRfG~P~Df~yfvD~~H~~giGVIlDWV 222 (608)
T TIGR01515 151 RELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDWV 222 (608)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 888631015787508712541466427887865535775527888887745689999999865895799313
No 75
>PRK09756 N-acetylgalactosamine-specific PTS system transporter subunit IIB; Provisional
Probab=76.85 E-value=6.8 Score=20.28 Aligned_cols=108 Identities=16% Similarity=0.270 Sum_probs=69.2
Q ss_pred CCCEEEEEECCCCHHHHHHCCCC-C-------CCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 65179984045511344412331-2-------578999999999998625894599999872699988899999999832
Q gi|254781120|r 236 GVMLAISLHAVSNDLRNILVPIN-R-------KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 (384)
Q Consensus 236 ~~~LAiSLha~~~~~R~~lmPi~-~-------~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~ 307 (384)
..=+.++=.+++|+.+..+|-.+ . -+++++..+.+... ....++++ +. .++++|.+|++-.-
T Consensus 31 ~~IiVvdD~vA~d~~~k~~l~maa~p~gv~v~i~~ve~a~~~l~~~---~~~~~i~v---i~----~~p~da~~l~~~g~ 100 (158)
T PRK09756 31 NLLVVVDDVVANDDIQQKLMGITAETYGFGIRFFTIEKTINVIGKA---APHQKIFL---IC----RTPQTVRKLVEGGI 100 (158)
T ss_pred CEEEEECCCCCCCHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHCC---CCCCEEEE---EE----CCHHHHHHHHHCCC
T ss_conf 9999977521279999999863489888579998799999998568---99977999---98----99999999997699
Q ss_pred CCCCEEEEEECCCCCCCC----CCCCCHHHHHHHHHHHHHCCCEEEECCCCC
Q ss_conf 545316675127788798----868898999999999998798785415877
Q gi|254781120|r 308 GIPAKINLIPFNPWPGCE----YLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 (384)
Q Consensus 308 ~~~~~vNLIp~N~~~~~~----~~~~~~~~i~~F~~~L~~~Gi~~tiR~srG 355 (384)
++ -.||+=.....+|.. .-.-+++.+++|. .|.+.|+.+.+|..-.
T Consensus 101 ~i-~~lNiG~m~~~~g~~~v~~~v~l~~ee~~~lk-~l~~~Gv~v~~Q~vP~ 150 (158)
T PRK09756 101 DL-KDVNVGNMHFSEGKKQISSKVYVDDQDLADLR-FIKQRGVNVFIQDVPG 150 (158)
T ss_pred CC-CEEEECCCCCCCCCEEEECCEEECHHHHHHHH-HHHHCCCEEEEEECCC
T ss_conf 97-67998896168997798674756899999999-9997798699998959
No 76
>COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]
Probab=76.02 E-value=7.1 Score=20.13 Aligned_cols=111 Identities=20% Similarity=0.266 Sum_probs=72.4
Q ss_pred CCEEEEEECCCCHHHHHHC----CCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 5179984045511344412----331257899999999999862-58945999998726999888999999998325453
Q gi|254781120|r 237 VMLAISLHAVSNDLRNILV----PINRKYPLEMLIDACRHYPGL-SNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311 (384)
Q Consensus 237 ~~LAiSLha~~~~~R~~lm----Pi~~~~~l~~l~~a~~~y~~~-~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~ 311 (384)
.=+.+|=-.++|+.|..+| |-+-++.+..+-.+++-|-.- ..+.++++=+ -+++|+..|++---++.
T Consensus 29 ~IiVvnD~va~D~~rk~~lk~aaP~gvk~~~~~v~k~i~~i~~~~~~~~~v~ll~-------~~p~d~~~lve~gv~I~- 100 (159)
T COG3444 29 RIIVVNDEVANDDVRKTLLKQAAPPGVKLRFFSVEKAIDVINKPKYDGQKVFLLF-------ENPQDVLRLVEGGVPIK- 100 (159)
T ss_pred EEEEECCCCCCCHHHHHHHHHHCCCCEEEEEEEHHHHHHHHCCCCCCCEEEEEEE-------CCHHHHHHHHHCCCCCC-
T ss_conf 8999745101498999999841688519999889999998628778881799997-------89899999986589971-
Q ss_pred EEEEEECCCCCCCC----CCCCCHHHHHHHHHHHHHCCCEEEECCCCCC
Q ss_conf 16675127788798----8688989999999999987987854158777
Q gi|254781120|r 312 KINLIPFNPWPGCE----YLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 (384)
Q Consensus 312 ~vNLIp~N~~~~~~----~~~~~~~~i~~F~~~L~~~Gi~~tiR~srG~ 356 (384)
.||+=..+..+|.. --.-+++.+.+|. .|.+.|+.+.+|.--..
T Consensus 101 ~iNVG~m~~~~gk~~i~k~vsl~e~D~~af~-~L~~~Gv~~~~r~vP~d 148 (159)
T COG3444 101 TINVGGMAFREGKKQITKAVSLDEKDIAAFK-KLKAKGVEVEVRKVPND 148 (159)
T ss_pred EEEECCCCCCCCCEEEECCEEECHHHHHHHH-HHHHCCCEEEEEECCCC
T ss_conf 7987476678884775041211889999999-99964907999989997
No 77
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=75.62 E-value=4.7 Score=21.48 Aligned_cols=139 Identities=17% Similarity=0.218 Sum_probs=82.6
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 28999999603768457787753688851387414788601256517998404551134441233125789999999999
Q gi|254781120|r 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 (384)
Q Consensus 193 N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~I~~la~~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~ 272 (384)
|-..|+.-+--+-+.+|||+- -+||+.+- .|++ -++.+..++.. +.-++|+- .|+.|++..+-
T Consensus 11 N~~GvL~RisglFsrRg~NI~--SL~v~~te-~~~i--------SR~Tiv~~g~~-~~i~QI~k-----QL~KLidVi~V 73 (161)
T PRK11895 11 NEPGVLSRVAGLFSRRGYNIE--SLTVAPTE-DPGL--------SRITIVTSGDE-RVLEQITK-----QLNKLIDVLKV 73 (161)
T ss_pred CCCCHHHHHHHHHHCCCCCEE--EEEEECCC-CCCC--------EEEEEEEECCH-HHHHHHHH-----HHHCCCCEEEE
T ss_conf 786799999999850686546--66650247-9981--------59999996899-99999999-----99632140346
Q ss_pred HHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECC
Q ss_conf 98625894599999872699988899999999832545316675127788798868898999999999998798785415
Q gi|254781120|r 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 (384)
Q Consensus 273 y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N~~~~~~~~~~~~~~i~~F~~~L~~~Gi~~tiR~ 352 (384)
+. .+....+.=|.+|+| |+-+.+.-.++.++++.+.++| +..++-.-.---.-+.+++++|.+.|+..|+.-.+|.
T Consensus 74 ~d-lt~~~~v~REl~LiK-v~~~~~~r~ei~~i~~~f~a~i--vd~~~~~~iiE~tG~~~kid~~i~~l~~~gI~E~~RS 149 (161)
T PRK11895 74 VD-LTEEAHVERELALVK-VRATGETRAEILRLADIFRAKI--VDVTPESLTIELTGTPDKIDAFIDLLRPFGIKEIART 149 (161)
T ss_pred EE-CCCCCEEEEEEEEEE-EECCHHHHHHHHHHHHHHCCEE--EECCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 64-588540475889999-9868532999999998707768--9716988999992998999999997515097899935
No 78
>cd00001 PTS_IIB_man PTS_IIB, PTS system, Mannose/sorbose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. The active site histidine receives a phosphate group from the IIA subunit and transfers it to the substrate.
Probab=74.40 E-value=7.8 Score=19.84 Aligned_cols=106 Identities=22% Similarity=0.361 Sum_probs=67.8
Q ss_pred EEEEEECCCCHHHHHHC----CCCCC---CCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 79984045511344412----33125---789999999999986258945999998726999888999999998325453
Q gi|254781120|r 239 LAISLHAVSNDLRNILV----PINRK---YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311 (384)
Q Consensus 239 LAiSLha~~~~~R~~lm----Pi~~~---~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~ 311 (384)
+.++=-+++|+.+..+| |-+-+ +++++..+.+.... .. ..++++ +. .++++|.+|++-.-++ -
T Consensus 29 vVvdD~~A~d~~~k~~l~mA~P~gvk~~i~sv~~a~~~l~~~~-~~-~~~ili---l~----k~~~da~~l~~~g~~i-~ 98 (151)
T cd00001 29 IVVNDEVANDELRKTLLKLAAPPGVKLRIFTVEKAIEAINSPK-YD-KQRVFL---LF----KNPQDVLRLVEGGVPI-K 98 (151)
T ss_pred EEECCHHCCCHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCCC-CC-CCEEEE---EE----CCHHHHHHHHHCCCCC-C
T ss_conf 9976223079999999997589998899987999999985666-78-966999---98----9999999999749998-8
Q ss_pred EEEEEECCCCCCCC----CCCCCHHHHHHHHHHHHHCCCEEEECCCCC
Q ss_conf 16675127788798----868898999999999998798785415877
Q gi|254781120|r 312 KINLIPFNPWPGCE----YLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 (384)
Q Consensus 312 ~vNLIp~N~~~~~~----~~~~~~~~i~~F~~~L~~~Gi~~tiR~srG 355 (384)
.||+=..+..+|.. .-.-+++.+++|. .|.+.|+.+.+|..-.
T Consensus 99 ~invG~~~~~~g~~~v~~~v~l~~ee~~~lk-~l~~~Gv~v~~q~vP~ 145 (151)
T cd00001 99 TINVGNMAFRPGKVQITKAVSLDEEDVAAFK-ELAQKGVKVEIQMVPN 145 (151)
T ss_pred EEEECCCCCCCCCEEEECCEEECHHHHHHHH-HHHHCCCEEEEEECCC
T ss_conf 7998998478997898474501899999999-9997798799998939
No 79
>pfam05114 DUF692 Protein of unknown function (DUF692). This family consists of several uncharacterized bacterial proteins.
Probab=73.71 E-value=8 Score=19.73 Aligned_cols=127 Identities=18% Similarity=0.230 Sum_probs=80.3
Q ss_pred EEECC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCC----HHHHHHHCCCC-----CCEEEEEECCCCHHHH
Q ss_conf 41014-54454289999996037684577877536888513874----14788601256-----5179984045511344
Q gi|254781120|r 183 VMMGM-GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGEEIG-----VMLAISLHAVSNDLRN 252 (384)
Q Consensus 183 VfMGm-GEPl~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~----p~I~~la~~~~-----~~LAiSLha~~~~~R~ 252 (384)
-||+. |.|+.-++.+..-.-+..+--|+++| |..++- ..+++|++..+ =+|++|=+.. .-.
T Consensus 35 N~~~~gG~~~~~L~~i~e~yPv~~HGv~LSlG------s~~~ld~~~L~~l~~l~~~~~~~~~SeHL~ws~~~g---~l~ 105 (275)
T pfam05114 35 NWMGMGGRLLAQLDRLRERLPVALHGLSLSLG------GAAPLDAELLRALKELAERHDPPLVSEHLSYCRDGG---HLY 105 (275)
T ss_pred CCCCCCCCHHHHHHHHHHHCCEECCCCCEECC------CCCCCCHHHHHHHHHHHHHHCCCEECCCEEEEECCC---CCC
T ss_conf 12477884699999999729976035640258------999879999999999999758773616325761698---435
Q ss_pred HHCCCCCCC-CHHHHHHHHHHHHHHCCCCEEEEE----EEEECCCCCCHHHHHHHHHHHCCCCCE----EEEEECCCC
Q ss_conf 412331257-899999999999862589459999----987269998889999999983254531----667512778
Q gi|254781120|r 253 ILVPINRKY-PLEMLIDACRHYPGLSNARRITFE----YVMLKGINDSPRDALNLIKILKGIPAK----INLIPFNPW 321 (384)
Q Consensus 253 ~lmPi~~~~-~l~~l~~a~~~y~~~~~~rrit~E----Yvli~gvNDs~e~a~~L~~ll~~~~~~----vNLIp~N~~ 321 (384)
.|+|+--.. .++-+.+-++..+..- +|++.+| |+-+.+ +...+++-|.++++.-.|. ||=+..|.+
T Consensus 106 dLLPlP~T~eal~~v~~ri~~vQd~L-~rplllEN~S~Y~~~~~--~~m~E~eFl~~l~~rtgC~LLLDvnNvyVna~ 180 (275)
T pfam05114 106 DLLPLPFTEEAVDHVAERIRVAQDAL-ERPLAVENISYYLHLPD--EEMNEVEFLNAVADEADCGLLLDVNNIYVNAV 180 (275)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHH-CCCEEEECHHHHCCCCC--CCCCHHHHHHHHHHHCCCCEEEEECCCEEEEE
T ss_conf 56765678999999999999999985-88679836788537887--88799999999998549718997232045300
No 80
>TIGR01125 TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125; InterPro: IPR005840 This is a family of mainly hypothetical proteins of unknown function. .
Probab=73.32 E-value=3.2 Score=22.73 Aligned_cols=221 Identities=17% Similarity=0.247 Sum_probs=125.1
Q ss_pred EEEECCC---CCCCEEEEEECCCCHHCCCCCCCCCC-HHHCCCCHHHHHHHHH-HHHHHHHHCCCCCCCCCCCCCCC--C
Q ss_conf 4430234---67733898840651004861322441-1102789899999999-99997222034444343444545--8
Q gi|254781120|r 104 ETVYIPE---KSRGTLCVSSQVGCSLTCSFCYTGTQ-KLVRNLTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPSV--G 176 (384)
Q Consensus 104 EsVlip~---~~r~T~CvSSQvGC~m~C~FCaTg~~-G~~RNLt~~EIv~Qv~-~~~~~l~~~~~~~~~~~~~~~~~--~ 176 (384)
-.|++|. ..|.=+=|---=||.-.|+||+==++ |-.|+=..++|+..+. ++.+-.. +.-..++... |
T Consensus 151 gdvf~pR~~~Tpr~YAYlKvaEGC~~~CaFCiIP~~rG~~rSR~ie~i~~Ea~~L~~~GvK------EiiliaQDTt~YG 224 (475)
T TIGR01125 151 GDVFVPRIKLTPRHYAYLKVAEGCNRRCAFCIIPSLRGKLRSRPIEEILKEAKRLVDQGVK------EIILIAQDTTAYG 224 (475)
T ss_pred CCEEECCCCCCCCCEEEEEECCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCC------EEEEEEEECCCCC
T ss_conf 6457402036877403687005778986521362336776776888899999999843983------8999964034776
Q ss_pred CCCCEEEEECCCCHHH-HHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHH-HCCCC--CCEEEEEECCCCHHHH
Q ss_conf 6110144101454454-289999996037684577877536888513874147886-01256--5179984045511344
Q gi|254781120|r 177 RKISNIVMMGMGEPLC-NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIG--VMLAISLHAVSNDLRN 252 (384)
Q Consensus 177 ~~i~NiVfMGmGEPl~-N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~I~~l-a~~~~--~~LAiSLha~~~~~R~ 252 (384)
.-+..=-=.=-|||.- .+..++..+.-+. |--| -|=.=+==-++++.|-.+ ++..+ ..|=|=|-..+|.+ -
T Consensus 225 ~DL~~R~~~~~~e~v~~~L~~Ll~~L~k~~---G~~W-iR~~YlYP~~~~~~vI~~m~~~~KvLPYlDiPLQH~sd~I-L 299 (475)
T TIGR01125 225 VDLYTRESEFDGEQVKSKLVELLEELGKLG---GIYW-IRLLYLYPDELTDDVIDLMAEGPKVLPYLDIPLQHASDRI-L 299 (475)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHHHCC---CCCE-EEEEEECCCCCCHHHHHHHHCCCCCCCEECCCCCCCCHHH-H
T ss_conf 411110552240145789999999740058---9622-7888760888866788998638980512254312387378-7
Q ss_pred HHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCC-CCHHHHHHHHHHHCCC-CCEEEEEECCCCCCC-CCCCC
Q ss_conf 41233125789999999999986258945999998726999-8889999999983254-531667512778879-88688
Q gi|254781120|r 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN-DSPRDALNLIKILKGI-PAKINLIPFNPWPGC-EYLCS 329 (384)
Q Consensus 253 ~lmPi~~~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvN-Ds~e~a~~L~~ll~~~-~~~vNLIp~N~~~~~-~~~~~ 329 (384)
++|- |.|+-+.+.+.++.+-.+- --++|==+.|=|.= -|.||=.+|.+|+... -=+|=.-.|=|.+|. .|.-|
T Consensus 300 K~M~--R~~~~~~~~~~i~~~R~~~--P~~vlRttfIVGFPGETEEdF~eL~~Fv~e~~~D~lG~F~YS~eEgt~A~~Lp 375 (475)
T TIGR01125 300 KLMR--RPGSGEEQLDLIERLREKV--PDAVLRTTFIVGFPGETEEDFQELLDFVEEGQFDRLGVFTYSPEEGTDAFALP 375 (475)
T ss_pred HCCC--CCCCHHHHHHHHHHHHHHC--CCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHCCC
T ss_conf 4278--9963889999999999755--66177224688688998788999999985202150000207832366035077
Q ss_pred C-------HHHHHHHHH
Q ss_conf 9-------899999999
Q gi|254781120|r 330 D-------QKDIVTFSE 339 (384)
Q Consensus 330 ~-------~~~i~~F~~ 339 (384)
+ .+|.+.|.+
T Consensus 376 d~vPeEVk~~R~~~Lm~ 392 (475)
T TIGR01125 376 DQVPEEVKEERRERLMA 392 (475)
T ss_pred CCCCHHHHHHHHHHHHH
T ss_conf 88788889999999999
No 81
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=73.06 E-value=8.3 Score=19.62 Aligned_cols=101 Identities=12% Similarity=0.125 Sum_probs=67.2
Q ss_pred EEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 99840455113444123312578999999999998625894599999872699988899999999832545316675127
Q gi|254781120|r 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFN 319 (384)
Q Consensus 240 AiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N 319 (384)
.+-||.++.... ...++++++.++.+ . |+ +-|+=+-+.+ .++..++.+.. ..+..++.++||
T Consensus 113 l~~lH~~~~~~~----------~~~~~~~~l~~lk~-~-G~---i~~iGvS~~~--~~~~~~~~~~~-~~~~~~vq~~~n 174 (285)
T cd06660 113 LYLLHWPDPDTP----------DIEETLRALEELVK-E-GK---IRAIGVSNFS--AEQLEEALAAA-GVPPAVNQVEYN 174 (285)
T ss_pred EEEEECCCCCCC----------CHHHHHHHHHHHHH-C-CC---EEEEEECCCC--HHHHHHHHHHC-CCCCEEEECCCC
T ss_conf 676404777889----------89999999999998-6-99---0299856899--99999999857-999167331015
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCH
Q ss_conf 78879886889899999999999879878541587771001120021
Q gi|254781120|r 320 PWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 (384)
Q Consensus 320 ~~~~~~~~~~~~~~i~~F~~~L~~~Gi~~tiR~srG~DI~aACGQL~ 366 (384)
+..... . ....+..+++|+.+..+...|+.+........
T Consensus 175 ~~~~~~-----~---~~~~~~~~~~gi~v~~~~~l~~G~l~~~~~~~ 213 (285)
T cd06660 175 LLDRQA-----E---EELLPYCREHGIGVIAYSPLAGGLLTGKYLPG 213 (285)
T ss_pred CHHCCH-----H---HHHHHHHHHCCCEEEEECCCCCCCCCCCCCCC
T ss_conf 132116-----8---99999999859889997356576047898766
No 82
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=70.96 E-value=9.2 Score=19.29 Aligned_cols=115 Identities=13% Similarity=0.147 Sum_probs=69.0
Q ss_pred HHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCC-CCHHHHHHHHHHHCC
Q ss_conf 8601256517998404551134441233125789999999999986258945999998726999-888999999998325
Q gi|254781120|r 230 RVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN-DSPRDALNLIKILKG 308 (384)
Q Consensus 230 ~la~~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvN-Ds~e~a~~L~~ll~~ 308 (384)
.+.+...+-+-+-|.++++++=.. |||.|.++...+|.+.-- +. -|-+---+|-|.- ++.++.-+-++.+..
T Consensus 137 e~~~r~~vWvELGLQT~h~~Tlk~---iNRgHd~~~y~dav~r~r-kr---gIkvc~HiI~GLPgE~~~~mleTak~v~~ 209 (312)
T COG1242 137 EYNKRYEVWVELGLQTAHDKTLKR---INRGHDFACYVDAVKRLR-KR---GIKVCTHLINGLPGETRDEMLETAKIVAE 209 (312)
T ss_pred HHHHHEEEEEEECCCHHHHHHHHH---HHCCCCHHHHHHHHHHHH-HC---CCEEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 986445788774530555899998---762454499999999999-74---97498888407988888999999999986
Q ss_pred CC---CEEEEEECCCC-------CCCCCCC-CCHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 45---31667512778-------8798868-89899999999999879878541
Q gi|254781120|r 309 IP---AKINLIPFNPW-------PGCEYLC-SDQKDIVTFSECIKRSGYSSPIR 351 (384)
Q Consensus 309 ~~---~~vNLIp~N~~-------~~~~~~~-~~~~~i~~F~~~L~~~Gi~~tiR 351 (384)
++ .|+.++..=.. ....++. +-++.++--.+.|+..-=.+.|-
T Consensus 210 ~~v~GIKlH~LhvvkgT~m~k~Y~~G~l~~ls~eeYv~~~~d~le~lpp~vviH 263 (312)
T COG1242 210 LGVDGIKLHPLHVVKGTPMEKMYEKGRLKFLSLEEYVELVCDQLEHLPPEVVIH 263 (312)
T ss_pred CCCCEEEEEEEEEECCCHHHHHHHCCCCEECCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 687538888788863875999997188655459999999999997489326999
No 83
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type; InterPro: IPR006466 This clade of sequences is closely related to MiaB, a modifier of isopentenylated adenosine-37 of certain eukaryotic and bacterial tRNAs (see IPR006463 from INTERPRO). Sequence alignments suggest that this family of sequences perform the same chemical transformation as MiaB, perhaps on a different (or differently modified) tRNA base substrate. This clade represents a subfamily that spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this group of sequences , , ..
Probab=64.13 E-value=12 Score=18.34 Aligned_cols=179 Identities=18% Similarity=0.295 Sum_probs=112.3
Q ss_pred EECCCCHHCCCCC----CCCCCHHHCCCCHHHHHHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCH-HH
Q ss_conf 8406510048613----224411102789899999999-99997222034444343444545861101441014544-54
Q gi|254781120|r 119 SSQVGCSLTCSFC----YTGTQKLVRNLTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP-LC 192 (384)
Q Consensus 119 SSQvGC~m~C~FC----aTg~~G~~RNLt~~EIv~Qv~-~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEP-l~ 192 (384)
+=--||--+|.|| |+|++ +.--++|||+|+- ++.+-..+ .+..+.| |..==|=.|+- |
T Consensus 149 pI~~GC~~~CsYCi~K~ARG~L---~S~PpEkiV~~ar~l~~~G~kE---------I~iTs~D---T~~YG~DiG~~kL- 212 (487)
T TIGR01578 149 PINQGCLGNCSYCITKIARGKL---ASYPPEKIVEKARELVAEGAKE---------IWITSQD---TAAYGKDIGERKL- 212 (487)
T ss_pred CCCCCCCCCCCEEEEEEEECCC---CCCCCHHHHHHHHHHHHCCCCE---------EEECCCC---CCCCCCCCCCCCC-
T ss_conf 4366635688754677764452---4887225689999999705312---------6513446---6634422376212-
Q ss_pred HHHHHHH-HHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHC---C-CC-CCEEEEEECCCCHHHHHHCC-CCCCCCHHH
Q ss_conf 2899999-9603768457787753688851387414788601---2-56-51799840455113444123-312578999
Q gi|254781120|r 193 NFDNVKK-SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE---E-IG-VMLAISLHAVSNDLRNILVP-INRKYPLEM 265 (384)
Q Consensus 193 N~d~v~~-ai~~l~~~~g~~~~~r~ITvST~Gi~p~I~~la~---~-~~-~~LAiSLha~~~~~R~~lmP-i~~~~~l~~ 265 (384)
.+++. .+.-+-++-.+-.|.-+ --++-+-++.|++ + .. ++ =||.|-|.-=+.+.- -+|.|..++
T Consensus 213 --PeLL~~~~t~I~g~F~~RVGMmn----P~~~~~IldeL~~v~~~h~kV~k---FLHlPvQSGsD~VL~~M~R~y~v~~ 283 (487)
T TIGR01578 213 --PELLRRLITEIPGDFRLRVGMMN----PKNVLEILDELIEVFQSHDKVYK---FLHLPVQSGSDSVLKEMKREYTVDD 283 (487)
T ss_pred --HHHHHHHHHHCCCCCEEEEECCC----CCCHHHHHHHHHHHHHCCCCEEE---ECCCCCCCCCHHHHHHCCCCCCHHH
T ss_conf --79999998625993278762588----76334788999999854882000---1154201587588974485652577
Q ss_pred HHHHHHHHHHHCCCCEEEEEEEEECCCCC-CHHHHHHHHHHHC-CCCCEEEEEECCCCCCC
Q ss_conf 99999999862589459999987269998-8899999999832-54531667512778879
Q gi|254781120|r 266 LIDACRHYPGLSNARRITFEYVMLKGIND-SPRDALNLIKILK-GIPAKINLIPFNPWPGC 324 (384)
Q Consensus 266 l~~a~~~y~~~~~~rrit~EYvli~gvND-s~e~a~~L~~ll~-~~~~~vNLIp~N~~~~~ 324 (384)
..+-...|-+ + =.-+||-==+|=|.-+ +.||=++=.+|++ -+|=+||.=.|=|=|+.
T Consensus 284 f~~Iv~~FR~-~-~~~~tl~TDiIvGFp~EtdddFE~T~~l~~k~RPe~In~~~fS~RpgT 342 (487)
T TIGR01578 284 FEDIVEKFRE-R-FPDLTLSTDIIVGFPTETDDDFEETMELLRKYRPEKINVTKFSPRPGT 342 (487)
T ss_pred HHHHHHHHHH-H-HCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf 8999999987-6-268647300167178988355899999999828983453024688887
No 84
>TIGR00089 TIGR00089 RNA modification enzyme, MiaB family; InterPro: IPR005839 This entry represents a family defined on the basis of sequence similarity. Most of these proteins are not yet characterised, but those that are include CDK5 regulatory subunit-associated protein 1, which specifically inhibits CDK5 activation by CDK5R1 . MiaB, a tRNA modification enzyme . The size of proteins in this entry ranges from 47 to 61 kDa and they contain six conserved cysteines, three of which are clustered. .
Probab=53.18 E-value=19 Score=17.05 Aligned_cols=250 Identities=17% Similarity=0.204 Sum_probs=150.0
Q ss_pred HHHHHHHCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCEEEEEECC-CCCCCEEEECCCCCCCCCEEEEEEECCCCCCCEE
Q ss_conf 999998717999678334788999998620225787023465314-5443037752477778981554430234677338
Q gi|254781120|r 38 IWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTL 116 (384)
Q Consensus 38 I~~wiy~k~v~~f~~MtnLpk~lR~~L~e~~~i~~l~iv~~~~S~-DGT~K~L~~l~d~~~~dg~~IEsVlip~~~r~T~ 116 (384)
+.+..+...+....++.++|..+.+.......-.....++...+. +-....+ .+.-+..++...
T Consensus 91 ~~~~p~~d~~~G~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~---------------~~~~~~~~~~~a 155 (455)
T TIGR00089 91 LKRIPEVDIVLGTQDVERIPELINSAEEGLREKQVVESVENISKEREEVYEEL---------------PRPRSFEGKTRA 155 (455)
T ss_pred HHHCCCEEEEECCHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHC---------------CCCCCCCCCEEE
T ss_conf 96458569998431378899999998638533355622787203454556443---------------664467775389
Q ss_pred EEEECCCCHHCCCCCCCCCC-HHHCCCCHHHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEE-CCCCHH-H
Q ss_conf 98840651004861322441-110278989999999-9999972220344443434445458611014410-145445-4
Q gi|254781120|r 117 CVSSQVGCSLTCSFCYTGTQ-KLVRNLTAEEILLQV-LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM-GMGEPL-C 192 (384)
Q Consensus 117 CvSSQvGC~m~C~FCaTg~~-G~~RNLt~~EIv~Qv-~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfM-GmGEPl-~ 192 (384)
-|+=|-||--.|+||.+=.. |-.|+=+.+.|++++ .++.+-..+-... | .|+=-= |-.-+= .
T Consensus 156 ~~~I~~GC~~~CtyCivP~~RG~~rSr~~e~Il~E~~~Lv~~G~kEi~L~-----------G---qnv~~YgG~D~~~~~ 221 (455)
T TIGR00089 156 FVKIQEGCDKFCTYCIVPYTRGRERSRPPEDILEEVKELVSKGVKEITLL-----------G---QNVNAYGGKDLEGKT 221 (455)
T ss_pred EEEECCCCCCCCCEEEECCCCCEECCCCHHHHHHHHHHHHHCCCEEEEEE-----------E---EEECCCCCCCCCCCC
T ss_conf 99840265869776881342660013588999999999984698099999-----------8---852562477888897
Q ss_pred H-HHHHHHHHHC-CCCCCCCCCCCCEEEEEECC---CCHHHHHHHCCC-CCCEEEEEECCCCHHHHHHCC-CCCCCCHHH
Q ss_conf 2-8999999603-76845778775368885138---741478860125-651799840455113444123-312578999
Q gi|254781120|r 193 N-FDNVKKSLSI-ASDSMGLSFSKRRITLSTSG---FVPNIARVGEEI-GVMLAISLHAVSNDLRNILVP-INRKYPLEM 265 (384)
Q Consensus 193 N-~d~v~~ai~~-l~~~~g~~~~~r~ITvST~G---i~p~I~~la~~~-~~~LAiSLha~~~~~R~~lmP-i~~~~~l~~ 265 (384)
| +..+++.+.- +- | +- ||=++|+= +-+.|..+-++. ..++.=+||=|-|.-=+.|.- -+|+|.-++
T Consensus 222 ~~La~LL~~l~~ki~---G--~~--RIR~~~~hP~~~~d~li~~~~~~~~~~v~~~lHlPvQSGSd~iLK~M~R~Y~~e~ 294 (455)
T TIGR00089 222 NSLADLLRELSKKID---G--IE--RIRFTSSHPDDVTDDLIELIAENKDPKVCKHLHLPVQSGSDRILKRMNRKYTREE 294 (455)
T ss_pred CCHHHHHHHHHHHCC---C--CE--EEEEECCCCCCCCHHHHHHHHHCCCCCCCCEECCCEECCCHHHHHCCCCCCCHHH
T ss_conf 647999999840059---7--02--6886046703268789999985078853520221266188699970378988899
Q ss_pred HHHHHHHHHHHCCCCEEEEEEEEECCC-CCCHHHHHHHHHHHCCC-CCEEEEEECCCCCCCC
Q ss_conf 999999998625894599999872699-98889999999983254-5316675127788798
Q gi|254781120|r 266 LIDACRHYPGLSNARRITFEYVMLKGI-NDSPRDALNLIKILKGI-PAKINLIPFNPWPGCE 325 (384)
Q Consensus 266 l~~a~~~y~~~~~~rrit~EYvli~gv-NDs~e~a~~L~~ll~~~-~~~vNLIp~N~~~~~~ 325 (384)
.++-+...-+.- -.+.|-==.|=|. +=|.||=....+|++.. .-++++=+|.|=||.+
T Consensus 295 ~~~~~~k~r~~~--P~~~i~TDiIVGFPGETeEdF~~Tl~l~~ev~F~~~~~F~YSpR~gTp 354 (455)
T TIGR00089 295 YLEIVEKLRAKV--PDAAITTDIIVGFPGETEEDFEETLDLVEEVKFDKLHSFIYSPRPGTP 354 (455)
T ss_pred HHHHHHHHHHHC--CCCEEECCEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC
T ss_conf 999999999847--881775026882899988999999999852384434312057888874
No 85
>pfam09494 Slx4 Slx4 endonuclease. The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates.
Probab=51.79 E-value=19 Score=16.89 Aligned_cols=12 Identities=17% Similarity=0.280 Sum_probs=5.6
Q ss_pred CHHHHHHHHHHH
Q ss_conf 558999999987
Q gi|254781120|r 33 MRTSQIWKWIYV 44 (384)
Q Consensus 33 fRa~QI~~wiy~ 44 (384)
-.-+.+...+|.
T Consensus 174 ~~~k~l~~~~~~ 185 (627)
T pfam09494 174 SDLKSLKNYIYG 185 (627)
T ss_pred HHHHHHHHHHHH
T ss_conf 368999998630
No 86
>pfam03830 PTSIIB_sorb PTS system sorbose subfamily IIB component.
Probab=51.47 E-value=20 Score=16.86 Aligned_cols=107 Identities=21% Similarity=0.363 Sum_probs=67.3
Q ss_pred CEEEEEECCCCHHHHHHC----CCCCC---CCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 179984045511344412----33125---78999999999998625894599999872699988899999999832545
Q gi|254781120|r 238 MLAISLHAVSNDLRNILV----PINRK---YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310 (384)
Q Consensus 238 ~LAiSLha~~~~~R~~lm----Pi~~~---~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~ 310 (384)
=+.++=.+++|+.+..+| |-+-+ +++++..+.+.... .. +.++++ +. .++++|.+|++---++
T Consensus 29 IiVvdD~~A~d~~~k~~l~ma~P~gvk~~i~sv~~a~~~l~~~~-~~-~~~v~i---l~----k~~~da~~l~~~g~~i- 98 (151)
T pfam03830 29 IIVVNDEVANDELRKTLLKMAAPAGVKVSIFSVEKAIEVIKKGK-YD-KQKVFL---LV----KNPQDALRLVEGGVPI- 98 (151)
T ss_pred EEEECCCCCCCHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCCC-CC-CCEEEE---EE----CCHHHHHHHHHCCCCC-
T ss_conf 99977522479999999996389998799987999999985767-78-966999---98----9999999999749998-
Q ss_pred CEEEEEECCCCCCCC----CCCCCHHHHHHHHHHHHHCCCEEEECCCCC
Q ss_conf 316675127788798----868898999999999998798785415877
Q gi|254781120|r 311 AKINLIPFNPWPGCE----YLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 (384)
Q Consensus 311 ~~vNLIp~N~~~~~~----~~~~~~~~i~~F~~~L~~~Gi~~tiR~srG 355 (384)
-.||+=.....+|.. .-.-+++.+++|. .|.+.|+.+.+|..-.
T Consensus 99 ~~vNvG~~~~~~g~~~v~~~v~l~~ee~~~l~-~l~~~Gv~v~~q~vP~ 146 (151)
T pfam03830 99 KELNVGNMHFKEGKKQITKSVSLDEEDIEAFK-ELKEKGVEVEIQQVPS 146 (151)
T ss_pred CEEEECCCCCCCCCEEEECCEEECHHHHHHHH-HHHHCCCEEEEEECCC
T ss_conf 87998888578996898674633899999999-9997798799998949
No 87
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=47.76 E-value=22 Score=16.46 Aligned_cols=202 Identities=17% Similarity=0.246 Sum_probs=105.6
Q ss_pred CHHCCCCCCCCCCHHHCCCCHHHHHHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCH-HHHHHHHHHHH
Q ss_conf 10048613224411102789899999999-99997222034444343444545861101441014544-54289999996
Q gi|254781120|r 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP-LCNFDNVKKSL 201 (384)
Q Consensus 124 C~m~C~FCaTg~~G~~RNLt~~EIv~Qv~-~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEP-l~N~d~v~~ai 201 (384)
|.-.|.||.- +..--...+.+++++ .+.+.+... .....+.++. -||-|=|-| ++..+.+.+-+
T Consensus 55 C~~~C~YC~f----~~~~~~~~~~~~~Y~~aL~~Ei~~~---------~~~~~~~~~~-tiy~GGGTPS~L~~~~l~~ll 120 (436)
T PRK08208 55 CESRCGFCNL----FTCTGADNEFIDSYLDALIRQARQV---------ALALGGVHFA-SFAVGGGTPTLLNIAQLEKLF 120 (436)
T ss_pred CCCCCCCCCC----CCCCCCCHHHHHHHHHHHHHHHHHH---------HHHCCCCCEE-EEEECCCHHHCCCHHHHHHHH
T ss_conf 0795889998----3766898338999999999999998---------7663898356-899679432219999999999
Q ss_pred HCCCCCCCCCCCCC--EEEEEECC--C-CHHHHHHHCCCCC-CEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 03768457787753--68885138--7-4147886012565-17998404551134441233125789999999999986
Q gi|254781120|r 202 SIASDSMGLSFSKR--RITLSTSG--F-VPNIARVGEEIGV-MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275 (384)
Q Consensus 202 ~~l~~~~g~~~~~r--~ITvST~G--i-~p~I~~la~~~~~-~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~y~~ 275 (384)
+.+... |++... -||+=.-= + ...++.+. +.+| ++-+-+.+-+|+.-+.| +|.++.+++.+|++.-.
T Consensus 121 ~~l~~~--f~~~~~~~EiTiE~nP~~~~~~~l~~l~-~~GvNRiSlGVQsf~~~~L~~l---gR~h~~~~~~~ai~~~r- 193 (436)
T PRK08208 121 FSVFDV--LGVDLWNIPKSVETSPTTTTAEKLALLN-AFGVNRVSIGVQSFHDSELHAL---HRRQNAASVHQALELIR- 193 (436)
T ss_pred HHHHHH--CCCCCCCEEEEEEECCCCCHHHHHHHHH-HCCCCEEEEECCCCCHHHHHHH---CCCCCHHHHHHHHHHHH-
T ss_conf 999985--8998467159998663636099999999-7398727874144898999984---68899999999999999-
Q ss_pred HCCCCEEEEEEEEECCCC-CCHHHHHH-HHHHHCCCCCEEEEEECCCCCCCCC----CCCCHHHHHHH---HHHHHHCCC
Q ss_conf 258945999998726999-88899999-9998325453166751277887988----68898999999---999998798
Q gi|254781120|r 276 LSNARRITFEYVMLKGIN-DSPRDALN-LIKILKGIPAKINLIPFNPWPGCEY----LCSDQKDIVTF---SECIKRSGY 346 (384)
Q Consensus 276 ~~~~rrit~EYvli~gvN-Ds~e~a~~-L~~ll~~~~~~vNLIp~N~~~~~~~----~~~~~~~i~~F---~~~L~~~Gi 346 (384)
..+-..|.+ =||=|+- .+.++-.. |.+.+.--+-||-+-++.--|+..+ .+.+++..+.| .+.|.++|+
T Consensus 194 ~~gf~nini--DLIyGlPgQt~~~~~~~l~~~l~l~p~HIS~Y~L~iep~T~l~~~~~~~~d~~~~my~~a~~~L~~~Gy 271 (436)
T PRK08208 194 AAHFPSLNI--DLIYGIPGQTHASFMESLHQALVYRPEELFLYPLYVRPLTGLGRRGTAWDDNMHSLYVLARDLLLNAGY 271 (436)
T ss_pred HCCCCEEEE--EEEECCCCCCHHHHHHHHHHHHCCCCCEEECCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 819985755--244369999999999999999827989898763304789830124798937999999999999997694
Q ss_pred EE
Q ss_conf 78
Q gi|254781120|r 347 SS 348 (384)
Q Consensus 347 ~~ 348 (384)
.-
T Consensus 272 ~~ 273 (436)
T PRK08208 272 TQ 273 (436)
T ss_pred HH
T ss_conf 43
No 88
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; InterPro: IPR011772 This entry respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions . This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This entry identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologues of this gene are not found in plants which rely solely on the aerobic cyclase.; GO: 0016709 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen NADH or NADPH as one donor and incorporation of one atom of oxygen, 0050661 NADP binding, 0015995 chlorophyll biosynthetic process.
Probab=47.15 E-value=6.6 Score=20.34 Aligned_cols=181 Identities=17% Similarity=0.230 Sum_probs=108.6
Q ss_pred CCEEEEEECCCCHHCCCCCCCCCCHHHC---CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 7338988406510048613224411102---7898999999999999722203444434344454586110144101454
Q gi|254781120|r 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVR---NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 (384)
Q Consensus 113 r~T~CvSSQvGC~m~C~FCaTg~~G~~R---NLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGE 189 (384)
.-.+-+.=-=|||.-|.|| |+-||=| .=++--.++.+...-+..+ | ..=..-==|
T Consensus 196 ~rvav~~faRGCPf~C~fC--sQwkFWrryR~RdPkKfvdEI~~L~r~hg-------------------V-gfF~LADEe 253 (506)
T TIGR02026 196 VRVAVPNFARGCPFTCNFC--SQWKFWRRYRARDPKKFVDEIEKLVREHG-------------------V-GFFILADEE 253 (506)
T ss_pred CEEEEECCCCCCCCCCCCC--CCCHHHHHHCCCCCCHHHHHHHHHHHHCC-------------------C-CEEEECCCC
T ss_conf 3698731678697655745--75204454047886138999999986318-------------------5-336632788
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCC------C-CCEEEEEECCCCHHHHHHCCCCCCCC
Q ss_conf 4542899999960376845778775368885138741478860125------6-51799840455113444123312578
Q gi|254781120|r 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI------G-VMLAISLHAVSNDLRNILVPINRKYP 262 (384)
Q Consensus 190 Pl~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~I~~la~~~------~-~~LAiSLha~~~~~R~~lmPi~~~~~ 262 (384)
|=.|=..-....+-|... ++.++- .|-+|| =+..|.|=++-+ + +++.+-.-|+++ -+|=-++|.-.
T Consensus 254 PT~Nr~~f~efCEe~Iar-~l~~~v-~~ginT--Rv~Di~RD~~~L~lyR~AGl~~i~LG~Eaaa~---~~Ld~~rK~t~ 326 (506)
T TIGR02026 254 PTVNRKKFQEFCEELIAR-NLQIKV-TWGINT--RVTDIVRDADLLKLYRRAGLVHISLGTEAAAQ---LTLDRFRKETT 326 (506)
T ss_pred CCCCHHHHHHHHHHHHHC-CCCEEE-EEEEEE--CCCHHHHHHHHHHHHHHCCEEEEHHHHHHHHH---HHHHHHCCCCC
T ss_conf 730168999999999857-895699-996511--13042402898888886060300121004665---32312136675
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHH-CCCCCEEEEEECCCCCCCC
Q ss_conf 99999999999862589459999987269998889999999983-2545316675127788798
Q gi|254781120|r 263 LEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL-KGIPAKINLIPFNPWPGCE 325 (384)
Q Consensus 263 l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll-~~~~~~vNLIp~N~~~~~~ 325 (384)
+++=.+|++=. +.+ .-++..-=..+=-|.++++..+=-+.+ ---|=.+|-.-|-|+|=.+
T Consensus 327 ~~~nkeAIrLl-r~h--~i~~~A~fi~g~e~~~~~~~~etyr~~ldw~PD~~~w~~yTPwpft~ 387 (506)
T TIGR02026 327 VSENKEAIRLL-RQH--NILSEAQFIVGLENETDETLEETYRQLLDWDPDLANWLMYTPWPFTS 387 (506)
T ss_pred CHHHHHHHHHH-HHC--CCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHH
T ss_conf 24448999999-761--84021002425435875689999999733783324214558987636
No 89
>KOG3040 consensus
Probab=46.96 E-value=23 Score=16.37 Aligned_cols=175 Identities=17% Similarity=0.189 Sum_probs=92.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCC-----CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCC---CCCCC
Q ss_conf 78989999999999997222034444343-----44454586110144101454454289999996037684---57787
Q gi|254781120|r 141 NLTAEEILLQVLLARSLLGDFPGCEDIEG-----MVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS---MGLSF 212 (384)
Q Consensus 141 NLt~~EIv~Qv~~~~~~l~~~~~~~~~~~-----~~~~~~~~~i~NiVfMGmGEPl~N~d~v~~ai~~l~~~---~g~~~ 212 (384)
+++..||..-.-.+++++.+......... .-++..+..--|-|.||.-+--.||++.-+|.++|.+. .-+.+
T Consensus 66 ~v~eeei~tsl~aa~~~~~~~~lrP~l~v~d~a~~dF~gidTs~pn~VViglape~F~y~~ln~AFrvL~e~~k~~LIai 145 (262)
T KOG3040 66 DVSEEEIFTSLPAARQYLEENQLRPYLIVDDDALEDFDGIDTSDPNCVVIGLAPEGFSYQRLNRAFRVLLEMKKPLLIAI 145 (262)
T ss_pred CCCHHHHCCCCHHHHHHHHHCCCCCEEEECCCCHHHCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 75578852753899999996587844897455053278766789983899517344668899999999970788707995
Q ss_pred CCCEEEEEECCCCHHHHHHHC--CC--CCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf 753688851387414788601--25--65179984045511344412331257899999999999862589459999987
Q gi|254781120|r 213 SKRRITLSTSGFVPNIARVGE--EI--GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVM 288 (384)
Q Consensus 213 ~~r~ITvST~Gi~p~I~~la~--~~--~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~y~~~~~~rrit~EYvl 288 (384)
++-|----+.|+.=+.--|.. +. .+. |.-+.-|+ ++=+++-+.++- ... =|-||
T Consensus 146 ~kgryykr~~Gl~lgpG~fv~aLeyatg~~-a~vvGKP~------------~~fFe~al~~~g----v~p-----~~aVM 203 (262)
T KOG3040 146 GKGRYYKRVDGLCLGPGPFVAALEYATGCE-ATVVGKPS------------PFFFESALQALG----VDP-----EEAVM 203 (262)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHCCCCE-EEEECCCC------------HHHHHHHHHHCC----CCH-----HHHEE
T ss_conf 275156413663237427777755504865-78706997------------789999997638----984-----79167
Q ss_pred E-CCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 2-6999888999999998325453166751277887988688989999999999
Q gi|254781120|r 289 L-KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341 (384)
Q Consensus 289 i-~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N~~~~~~~~~~~~~~i~~F~~~L 341 (384)
| +++||..--|.... ++++.+| -=-|-|.+...-..|.....+.|.+-+
T Consensus 204 IGDD~~dDvgGAq~~G--MrgilVk--TGK~rpsDe~k~~~~p~~~~d~f~~AV 253 (262)
T KOG3040 204 IGDDLNDDVGGAQACG--MRGILVK--TGKFRPSDEEKPPVPPDLTADNFADAV 253 (262)
T ss_pred ECCCCCCCHHHHHHHC--CEEEEEE--CCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 7562232205576616--2258853--066577544469999513566589999
No 90
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=46.82 E-value=23 Score=16.36 Aligned_cols=146 Identities=17% Similarity=0.245 Sum_probs=77.5
Q ss_pred CEEE-EEECCCCHHC----CCCCCCCCCHHHCCCCHHHHHHHHHHHHH-HHHHCCCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 3389-8840651004----86132244111027898999999999999-7222034444343444545861101441014
Q gi|254781120|r 114 GTLC-VSSQVGCSLT----CSFCYTGTQKLVRNLTAEEILLQVLLARS-LLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 (384)
Q Consensus 114 ~T~C-vSSQvGC~m~----C~FCaTg~~G~~RNLt~~EIv~Qv~~~~~-~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGm 187 (384)
+-+| +-|+=||+-. |+||-.---|-.-+=....|++.|-..-+ -... + ..||.-.=..|||-
T Consensus 182 ~vi~EiETyRGC~r~~~ggCSFCtEp~~g~~~~R~~e~Vv~EVkaLY~~Gvrh-----------F-RlGRQ~difsy~~~ 249 (560)
T COG1031 182 YVICEIETYRGCPRRVSGGCSFCTEPVRGRPEFRPPEDVVEEVKALYRAGVRH-----------F-RLGRQADIFSYGAD 249 (560)
T ss_pred EEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCE-----------E-EECCCCCEEEECCC
T ss_conf 07999851368732036887541675768846589899999999999706030-----------5-61565410112156
Q ss_pred ---C-CHHHHHHHHHHHHHCCCCCCCCCCCCCEE------EEEECCCCH---HHHH-HHC-C-CCCCEEEEEECCCCHHH
Q ss_conf ---5-44542899999960376845778775368------885138741---4788-601-2-56517998404551134
Q gi|254781120|r 188 ---G-EPLCNFDNVKKSLSIASDSMGLSFSKRRI------TLSTSGFVP---NIAR-VGE-E-IGVMLAISLHAVSNDLR 251 (384)
Q Consensus 188 ---G-EPl~N~d~v~~ai~~l~~~~g~~~~~r~I------TvST~Gi~p---~I~~-la~-~-~~~~LAiSLha~~~~~R 251 (384)
| =|--|-+++-+-.+-+.+- .-++.-=|| ||-+ .+. .|-| +.. . ..--.|+-|-++++..-
T Consensus 250 ~~g~e~P~PnPealekL~~Gir~~-AP~l~tLHiDNaNP~tIa~--yp~eSr~i~K~ivky~TpGnVaAfGlEsaDp~V~ 326 (560)
T COG1031 250 DNGGEVPRPNPEALEKLFRGIRNV-APNLKTLHIDNANPATIAR--YPEESREIAKVIVKYGTPGNVAAFGLESADPRVA 326 (560)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCHHHHC--CHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
T ss_conf 568879999989999999999861-8987266545899564415--8488999999998647987554330454687787
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 44123312578999999999998625
Q gi|254781120|r 252 NILVPINRKYPLEMLIDACRHYPGLS 277 (384)
Q Consensus 252 ~~lmPi~~~~~l~~l~~a~~~y~~~~ 277 (384)
.+ -|-.-+-+|.++|++-.-+.-
T Consensus 327 r~---NnL~~spEEvl~AV~ivn~vG 349 (560)
T COG1031 327 RK---NNLNASPEEVLEAVEIVNEVG 349 (560)
T ss_pred HH---CCCCCCHHHHHHHHHHHHHHC
T ss_conf 64---056699899999999999864
No 91
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=46.24 E-value=23 Score=16.30 Aligned_cols=68 Identities=13% Similarity=0.217 Sum_probs=36.4
Q ss_pred CEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCE
Q ss_conf 45999998726999888999999998325453166751277887988688989999999999987987
Q gi|254781120|r 280 RRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYS 347 (384)
Q Consensus 280 rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N~~~~~~~~~~~~~~i~~F~~~L~~~Gi~ 347 (384)
..=.+.|.......+..++|+-++..++.....-.+.++-+++.........+.+.+|.+.+++.|..
T Consensus 57 ~~G~YHy~~~~~~~~a~~eA~~f~~~~~~~~~~~~~~~~lD~E~~~~~~~~~~~~~~f~~~v~~~g~~ 124 (192)
T cd06522 57 KVSAYHYAHYTSAADAQAEARYFANTAKSLGLSKNTVMVADMEDSSSSGNATANVNAFWQTMKAAGYK 124 (192)
T ss_pred EEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 46899983259808999999999986464189878836998754896688999999999999985595
No 92
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=46.23 E-value=23 Score=16.30 Aligned_cols=88 Identities=19% Similarity=0.169 Sum_probs=51.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHH---HHHHHHHHHHCCCCCCCCCCCCCEE
Q ss_conf 7898999999999999722203444434344454586110144101454454---2899999960376845778775368
Q gi|254781120|r 141 NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC---NFDNVKKSLSIASDSMGLSFSKRRI 217 (384)
Q Consensus 141 NLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl~---N~d~v~~ai~~l~~~~g~~~~~r~I 217 (384)
|.|..|.++.+..+-++..+ .+.++..-+-|.-|=|.. ..+.+.+.++.+. ..|+.+|
T Consensus 112 ~~t~~e~l~~~~~~i~~a~~--------------~g~~v~~~i~~afg~p~~~~~~~~~l~~~~~~~~-----~~Ga~~I 172 (287)
T PRK05692 112 NCSIAESLARFEPVAEAAKQ--------------AGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLF-----ALGCDEI 172 (287)
T ss_pred CCCHHHHHHHHHHHHHHHHH--------------CCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHH-----HCCCCEE
T ss_conf 79999999999999999997--------------6987999874013676468648999999999998-----5799785
Q ss_pred EEE-ECCCC-H-HHHH----HHCCCCCCEEEEEECCCC
Q ss_conf 885-13874-1-4788----601256517998404551
Q gi|254781120|r 218 TLS-TSGFV-P-NIAR----VGEEIGVMLAISLHAVSN 248 (384)
Q Consensus 218 TvS-T~Gi~-p-~I~~----la~~~~~~LAiSLha~~~ 248 (384)
+++ |+|+. | .+.+ +.+..+. ..+++|.-||
T Consensus 173 ~laDT~G~a~P~~v~~~i~~v~~~~~~-~~i~~H~Hnd 209 (287)
T PRK05692 173 SLGDTIGVGTPGQVRRVLEAVLAEFPA-ERLAGHFHDT 209 (287)
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHHCCC-CCEEEEECCC
T ss_conf 447655666999999999999986688-7235674487
No 93
>TIGR01212 TIGR01212 radical SAM protein, TIGR01212 family; InterPro: IPR005911 This uncharacterised protein family shows significant similarity to IPR005910 from INTERPRO, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain..
Probab=44.97 E-value=8.9 Score=19.39 Aligned_cols=195 Identities=16% Similarity=0.215 Sum_probs=99.9
Q ss_pred HHCCCCC-CCCCCHHHCCCCHHHHH--HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHH
Q ss_conf 0048613-22441110278989999--99999999722203444434344454586110144101454454289999996
Q gi|254781120|r 125 SLTCSFC-YTGTQKLVRNLTAEEIL--LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 (384)
Q Consensus 125 ~m~C~FC-aTg~~G~~RNLt~~EIv--~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl~N~d~v~~ai 201 (384)
.=||.|| ..|+-+|..|-+..+|. +||-...+.....+. ..=+.+ +--|-|...-+
T Consensus 37 ~GGCtfC~~a~~~~f~~~~~~~~~~~~~~i~~~~~~~~k~G~---------------kkf~aY------FQ~yTnTYApv 95 (307)
T TIGR01212 37 RGGCTFCNDASKPSFADEVTQARIPIKEQIKKRKKKYKKDGI---------------KKFIAY------FQAYTNTYAPV 95 (307)
T ss_pred CCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC---------------EEEEEE------ECCCCCCCHHH
T ss_conf 577252178888852451023544689999999976531573---------------157899------73887650026
Q ss_pred HCCCCCCCCCCCCC---EEEEEECC-CCH--HHHHHHC---C-CCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 03768457787753---68885138-741--4788601---2-5651799840455113444123312578999999999
Q gi|254781120|r 202 SIASDSMGLSFSKR---RITLSTSG-FVP--NIARVGE---E-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 (384)
Q Consensus 202 ~~l~~~~g~~~~~r---~ITvST~G-i~p--~I~~la~---~-~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~ 271 (384)
+.|.+-+-..++.. .|.|+|== .+| -++=|++ . ..+-+-+=|-++++++ |--|||.|.+.+.++|..
T Consensus 96 e~Lk~~y~~aL~~~~vVGlsvgTRPDC~P~~VLDlL~ey~~~GyevWvELGLQtah~~T---L~~INRgHd~~~y~~a~~ 172 (307)
T TIGR01212 96 EVLKEMYEQALSEDDVVGLSVGTRPDCVPDEVLDLLAEYKERGYEVWVELGLQTAHDRT---LKKINRGHDFACYVDAVK 172 (307)
T ss_pred HHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCHHHHH---HHHHCCCCCHHHHHHHHH
T ss_conf 88889999876327805775368898774789999999954975899960535655899---998514378789999999
Q ss_pred HHHHHCCCCEEEEEEEE-ECCCCCCHHHHHHHHHHHCCCC---CEEEEEECCCCCCCC---------CCC-CCHHHHHHH
Q ss_conf 99862589459999987-2699988899999999832545---316675127788798---------868-898999999
Q gi|254781120|r 272 HYPGLSNARRITFEYVM-LKGINDSPRDALNLIKILKGIP---AKINLIPFNPWPGCE---------YLC-SDQKDIVTF 337 (384)
Q Consensus 272 ~y~~~~~~rrit~EYvl-i~gvNDs~e~a~~L~~ll~~~~---~~vNLIp~N~~~~~~---------~~~-~~~~~i~~F 337 (384)
.- ++. |=+|--.-++ |.| ++-++.-+=++++..++ +|+..+-. +.|+. |+. +.++.++.-
T Consensus 173 ~~-~kr-GikVC~H~I~GLPg--E~~~~~~eTak~~~~l~vdGiKiH~Lhv--vkGt~m~k~Y~~G~~~~l~~e~Y~~~~ 246 (307)
T TIGR01212 173 RA-RKR-GIKVCSHVILGLPG--EDREEMLETAKIVASLDVDGIKIHPLHV--VKGTKMAKQYEKGELKTLSLEEYISLA 246 (307)
T ss_pred HH-HHC-CCEEEEEEEECCCC--CCHHHHHHHHHHHHHCCCCEEEEEEEEE--EECCHHHHHHHCCCEEECCHHHHHHHH
T ss_conf 99-765-98899998742898--8888999999999837988488720178--735757887545740104767799999
Q ss_pred HHHHHHCCCEEE
Q ss_conf 999998798785
Q gi|254781120|r 338 SECIKRSGYSSP 349 (384)
Q Consensus 338 ~~~L~~~Gi~~t 349 (384)
.+.|+..-=.+.
T Consensus 247 ~d~le~lpP~vv 258 (307)
T TIGR01212 247 CDFLEHLPPEVV 258 (307)
T ss_pred HHHHHCCCCCEE
T ss_conf 999850898559
No 94
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases; InterPro: IPR011830 Methanogenic archaea contain three closely related homologs of the 2-isopropylmalate synthases (LeuA) represented by IPR005671 from INTERPRO. Two of these in Methanococcus janaschii (MJ1392 - CimA ; MJ0503 - AksA ) have been characterised as catalyzing alternative reactions leaving the third (MJ1195) as the presumptive LeuA enzyme. CimA is citramalate (2-methylmalate) synthase, which condenses acetyl-CoA with pyruvate. This enzyme is believed to be involved in the biosynthesis of isoleucine in methanogens and possibly other species lacking threonine dehydratase. AksA is a homocitrate synthase which also produces (homo)2-citrate and (homo)3-citrate in the biosynthesis of Coenzyme B which is restricted solely to methanogenic archaea. Methanogens, then should and apparently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea, which lack a threonine dehydratase (mainly Euryarchaeota), should contain both CimA and LeuA genes. This is true for archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in IPR005671 from INTERPRO and one in IPR005675 from INTERPRO which may fulfil these roles. Proteins from other species, which have only one hit to this entry and lack threonine dehydratase, are very likely to be LeuA enzymes.; GO: 0046912 transferase activity transferring acyl groups acyl groups converted into alkyl on transfer, 0019752 carboxylic acid metabolic process.
Probab=44.95 E-value=17 Score=17.25 Aligned_cols=117 Identities=19% Similarity=0.261 Sum_probs=76.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE
Q ss_conf 27898999999999999722203444434344454586110144101454454289999996037684577877536888
Q gi|254781120|r 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITL 219 (384)
Q Consensus 140 RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl~N~d~v~~ai~~l~~~~g~~~~~r~ITv 219 (384)
+|-|-+||++..+-+=+|..+.+.-++.-..=+..+ ..|=+++... .+-.-|+-||+|
T Consensus 105 ~~K~~devle~~veAvEYAKEHGLiVEfSAEDATRt-----------------d~dfLIk~~k-----~A~eAGADRi~~ 162 (371)
T TIGR02090 105 KNKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRT-----------------DIDFLIKVFK-----KAEEAGADRINV 162 (371)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCC-----------------CHHHHHHHHH-----HHHHCCCCEEEE
T ss_conf 887899999999998987752573553177887658-----------------6789999987-----133216777550
Q ss_pred E-ECCCC-H-HHHHHHCCC--CCC--EEEEEECCCC---HHHHHHC-----------CCC------CCCCHHHHHHHHHH
Q ss_conf 5-13874-1-478860125--651--7998404551---1344412-----------331------25789999999999
Q gi|254781120|r 220 S-TSGFV-P-NIARVGEEI--GVM--LAISLHAVSN---DLRNILV-----------PIN------RKYPLEMLIDACRH 272 (384)
Q Consensus 220 S-T~Gi~-p-~I~~la~~~--~~~--LAiSLha~~~---~~R~~lm-----------Pi~------~~~~l~~l~~a~~~ 272 (384)
. |+|+. | +...|-.++ .++ +-||.|==|| .+=+.|. -+| -.=+|||++-||..
T Consensus 163 ~DTVGV~~P~km~~l~k~~k~~~kKd~~~sVHCHNDFGlAtANsi~gv~aGA~~vH~TvNGiGERAGNAaLEEVV~AL~~ 242 (371)
T TIGR02090 163 ADTVGVLTPQKMEELIKKIKENVKKDLPVSVHCHNDFGLATANSIAGVLAGAEQVHVTVNGIGERAGNAALEEVVMALKV 242 (371)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 78556368267999999999863588705886208601889999999722835773555576101345889999999898
Q ss_pred HHHHCC
Q ss_conf 986258
Q gi|254781120|r 273 YPGLSN 278 (384)
Q Consensus 273 y~~~~~ 278 (384)
.+-..+
T Consensus 243 LYG~~~ 248 (371)
T TIGR02090 243 LYGVDT 248 (371)
T ss_pred HCCCCC
T ss_conf 714102
No 95
>PRK11347 antitoxin ChpS; Provisional
Probab=44.43 E-value=15 Score=17.77 Aligned_cols=35 Identities=29% Similarity=0.571 Sum_probs=24.9
Q ss_pred CCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 5651799840455113444123312578999999999
Q gi|254781120|r 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 (384)
Q Consensus 235 ~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~ 271 (384)
+++.=.+.+...++.+- |-|+.++|+|++|+++|+
T Consensus 26 l~~G~~v~~~v~~g~lv--i~P~~~kYtL~eLlaqcd 60 (83)
T PRK11347 26 LQPGQSVEAQVSNNQLI--LTPISRRYSLDELLAQCD 60 (83)
T ss_pred CCCCCEEEEEEECCEEE--EEECCCCCCHHHHHHCCC
T ss_conf 99999988999899699--964787778999996289
No 96
>KOG1552 consensus
Probab=44.39 E-value=25 Score=16.10 Aligned_cols=110 Identities=21% Similarity=0.342 Sum_probs=79.4
Q ss_pred CCHH--HHHHHHHHHHHCCCCCCCCCCCCCEEEEE--ECCCCHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCC-CC
Q ss_conf 5445--42899999960376845778775368885--1387414788601256517998404551134441233125-78
Q gi|254781120|r 188 GEPL--CNFDNVKKSLSIASDSMGLSFSKRRITLS--TSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRK-YP 262 (384)
Q Consensus 188 GEPl--~N~d~v~~ai~~l~~~~g~~~~~r~ITvS--T~Gi~p~I~~la~~~~~~LAiSLha~~~~~R~~lmPi~~~-~~ 262 (384)
|+|- .-|+-+..+.+.|....| .+.+|-+. ..|-+|.++-.++. + --|+=||+|.-..++-++|.-++ |-
T Consensus 104 G~psE~n~y~Di~avye~Lr~~~g---~~~~Iil~G~SiGt~~tv~Lasr~-~-~~alVL~SPf~S~~rv~~~~~~~~~~ 178 (258)
T KOG1552 104 GKPSERNLYADIKAVYEWLRNRYG---SPERIILYGQSIGTVPTVDLASRY-P-LAAVVLHSPFTSGMRVAFPDTKTTYC 178 (258)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCC---CCCEEEEEEECCCCHHHHHHHHCC-C-CCEEEEECCCHHHHHHHCCCCCEEEE
T ss_conf 975633405549999999997559---986189997468723555676218-8-72599946423325560148635786
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEEEEECCCCC---CHHHHHHHHHHHCCC
Q ss_conf 99999999999862589459999987269998---889999999983254
Q gi|254781120|r 263 LEMLIDACRHYPGLSNARRITFEYVMLKGIND---SPRDALNLIKILKGI 309 (384)
Q Consensus 263 l~~l~~a~~~y~~~~~~rrit~EYvli~gvND---s~e~a~~L~~ll~~~ 309 (384)
. +.|+...+-+.|+.--..+-|..| ...|.++|-+.+++-
T Consensus 179 ~-------d~f~~i~kI~~i~~PVLiiHgtdDevv~~sHg~~Lye~~k~~ 221 (258)
T KOG1552 179 F-------DAFPNIEKISKITCPVLIIHGTDDEVVDFSHGKALYERCKEK 221 (258)
T ss_pred E-------CCCCCCCCCEEECCCEEEEECCCCCEECCCCCHHHHHHCCCC
T ss_conf 0-------122115761350377899945667310454358899754335
No 97
>PHA01745 hypothetical protein
Probab=44.16 E-value=5 Score=21.25 Aligned_cols=150 Identities=13% Similarity=0.128 Sum_probs=83.2
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCCCCCEEEEEECC-----CC--------------HHHHHH
Q ss_conf 89999996037684577877536888513874147886012565179984045-----51--------------134441
Q gi|254781120|r 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV-----SN--------------DLRNIL 254 (384)
Q Consensus 194 ~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~I~~la~~~~~~LAiSLha~-----~~--------------~~R~~l 254 (384)
++++-=--+...|.-|+.++.+.|-+|---+..+-+.+. ..--+||.-| -+ |.-.++
T Consensus 28 ~~~i~W~NeTwVDSGGyQI~~~~ikis~e~vl~KYK~~~----a~a~~sLDiPs~~~~~~~~Nf~~FEyLYt~~e~~~~i 103 (306)
T PHA01745 28 NKKITWKNETWVDSGGYQIMLYNLKISVDDVLDKYKTYN----AYAFFSLDIPSIFEPLSRKNFEYFEYLYTKLEYIERI 103 (306)
T ss_pred CCCCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHCCC----CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCE
T ss_conf 365542465347268738985676455999999973258----1038970473234882012168999999887631215
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCH------------HHHHHHHHHHCCCCC-----------
Q ss_conf 233125789999999999986258945999998726999888------------999999998325453-----------
Q gi|254781120|r 255 VPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP------------RDALNLIKILKGIPA----------- 311 (384)
Q Consensus 255 mPi~~~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~------------e~a~~L~~ll~~~~~----------- 311 (384)
+|+-..||.+++-+|++-|.+-+ ..|.| .|+=-+. ...+.-++.++-+++
T Consensus 104 iPViH~Y~~~~vd~aiDFYsQYt--d~iAF-----GGivasSk~k~l~~a~~~y~yvRk~vk~lHvlG~~aPy~r~vF~~ 176 (306)
T PHA01745 104 IPVIHLYPVREVDEAIDFYSQYT--DYIAF-----GGIVASSKLKILIYAFPWYYYIRKYVKRLHVLGMSAPYFRQVFYD 176 (306)
T ss_pred EEEEECCCHHHHHHHHHHHHHHH--HHEEE-----CCEECHHHCCCEEEEEEHHHHHHHHHHHEEEECCCCHHHHHHHCC
T ss_conf 33674053888888887898765--65024-----546035550844677418999998755403413687258877214
Q ss_pred --------E-------EEEEECCC---CCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCC
Q ss_conf --------1-------66751277---8879886889899999999999879878541587
Q gi|254781120|r 312 --------K-------INLIPFNP---WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 (384)
Q Consensus 312 --------~-------vNLIp~N~---~~~~~~~~~~~~~i~~F~~~L~~~Gi~~tiR~sr 354 (384)
+ -=++|=-. +.+..+++-+.+..+.....|.+.+++-.++-+-
T Consensus 177 ads~DTsTy~~~~~~r~i~~pdg~~ryVgerK~R~~t~ee~E~L~~fL~kt~fpf~~d~~n 237 (306)
T PHA01745 177 ADSMDTSTYTVKAIHREIFWFDGTRRYVGERKARTLTKEEEESLKEFLDKTNFPFPYDVSN 237 (306)
T ss_pred CCCCCCHHEEEECCCCEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
T ss_conf 2214431014631451699508953661314541101777999999996089986123566
No 98
>PRK13057 putative lipid kinase; Reviewed
Probab=43.95 E-value=25 Score=16.05 Aligned_cols=52 Identities=12% Similarity=0.072 Sum_probs=20.9
Q ss_pred HHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCEEE
Q ss_conf 9999999871799967833478899999862022578702346531454430377
Q gi|254781120|r 36 SQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLL 90 (384)
Q Consensus 36 ~QI~~wiy~k~v~~f~~MtnLpk~lR~~L~e~~~i~~l~iv~~~~S~DGT~K~L~ 90 (384)
.|+-..+-+.++.--..+|.-+....+...+. . .....+- -..-|||.--..
T Consensus 16 ~~~~~~l~~~g~~~~~~~T~~~g~a~~~~~~~-~-~~~d~vv-~~GGDGTv~ev~ 67 (287)
T PRK13057 16 GAARAALEAAGLELVEPHPESPADLSEVIEAH-A-DGVDLVI-VGGGDGTLNAAA 67 (287)
T ss_pred HHHHHHHHHCCCEEEEEECCCHHHHHHHHHHH-H-CCCCEEE-EECCHHHHHHHH
T ss_conf 99999999879979999549878999999998-6-6999899-988589999999
No 99
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=43.86 E-value=25 Score=16.04 Aligned_cols=200 Identities=12% Similarity=0.219 Sum_probs=107.8
Q ss_pred CHHCCCCCCCCCCHHHCCCCHHHHHHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCH-HHHHHHHHHHH
Q ss_conf 10048613224411102789899999999-99997222034444343444545861101441014544-54289999996
Q gi|254781120|r 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP-LCNFDNVKKSL 201 (384)
Q Consensus 124 C~m~C~FCaTg~~G~~RNLt~~EIv~Qv~-~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEP-l~N~d~v~~ai 201 (384)
|.-.|.||.=-+. .+..+.++.++ .+.+.++.. .....++++ -||-|=|-| +++.+.+.+-+
T Consensus 11 C~~~C~yC~f~~~-----~~~~~~~~~Y~~aL~~Ei~~~----------~~~~~~~~~-tiy~GGGTPs~L~~~~l~~ll 74 (377)
T PRK08599 11 CEHICYYCDFNKV-----FIENQPVDEYLDALIKEMEST----------VAKYIRKLK-TIYIGGGTPTALSAEQLERLL 74 (377)
T ss_pred CCCCCCCCCCCCC-----CCCCCCHHHHHHHHHHHHHHH----------HHHCCCCEE-EEEECCCCCCCCCHHHHHHHH
T ss_conf 9986899969164-----689877999999999999976----------551499557-999799810009999999999
Q ss_pred HCCCCCCCCCCCCC-EEEEEEC--CCC-HHHHHHHCCCCC-CEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 03768457787753-6888513--874-147886012565-179984045511344412331257899999999999862
Q gi|254781120|r 202 SIASDSMGLSFSKR-RITLSTS--GFV-PNIARVGEEIGV-MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276 (384)
Q Consensus 202 ~~l~~~~g~~~~~r-~ITvST~--Gi~-p~I~~la~~~~~-~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~y~~~ 276 (384)
+.+... |++++- -||+=.. -+- .+++.+ .+.+| ++-+-+.+-+++..+.| +|.++.+++.++++.-. .
T Consensus 75 ~~i~~~--f~~~~~~EiTiE~nP~~~~~~~l~~l-~~~GvNRiSlGvQsf~~~~l~~l---gR~h~~~~~~~~i~~~r-~ 147 (377)
T PRK08599 75 NAIHRT--LPLSDLEEFTFEANPGDLTKEKLQVL-KDYGVNRISLGVQTFNDELLKKI---GRTHNEEDVYESIANAK-K 147 (377)
T ss_pred HHHHHH--CCCCCCCEEEEEECCCCCCHHHHHHH-HHCCCCEEEEECCCCCHHHHHHH---CCCCCHHHHHHHHHHHH-H
T ss_conf 999997--69776732799955151639999999-97099879996535987999986---89998999999999999-7
Q ss_pred CCCCEEEEEEEEECCCC-CCHHHHHHHHHHHCC-CCCEEEEEECCCCCCCCC---------CCCCHHHH-H---HHHHHH
Q ss_conf 58945999998726999-888999999998325-453166751277887988---------68898999-9---999999
Q gi|254781120|r 277 SNARRITFEYVMLKGIN-DSPRDALNLIKILKG-IPAKINLIPFNPWPGCEY---------LCSDQKDI-V---TFSECI 341 (384)
Q Consensus 277 ~~~rrit~EYvli~gvN-Ds~e~a~~L~~ll~~-~~~~vNLIp~N~~~~~~~---------~~~~~~~i-~---~F~~~L 341 (384)
.+-..|.+ =||=|+- -+.++...=.+.+-. -+-||-+-++.--|+.+| ..|+.+.. + .-.+.|
T Consensus 148 ~gf~~ini--DLIyGlP~Qt~~~~~~~l~~~~~l~p~hiS~Y~L~ie~~t~~~~~~~~g~~~lp~~d~~~~m~~~~~~~L 225 (377)
T PRK08599 148 AGFKNISI--DLIYALPGQTIEDVKESLDKALALDIPHYSLYSLILEPKTVFYNLMRKGKLRLPTEDLEAEMYEYLMSEM 225 (377)
T ss_pred CCCCCEEE--EEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 59974115--6542788898999999999997306363455442335887688887559878999799999999999999
Q ss_pred HHCCCEE
Q ss_conf 9879878
Q gi|254781120|r 342 KRSGYSS 348 (384)
Q Consensus 342 ~~~Gi~~ 348 (384)
.++|+.-
T Consensus 226 ~~~Gy~~ 232 (377)
T PRK08599 226 EKHGFHQ 232 (377)
T ss_pred HHCCCCC
T ss_conf 9759974
No 100
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=41.60 E-value=27 Score=15.80 Aligned_cols=16 Identities=6% Similarity=0.187 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHCCCEE
Q ss_conf 9999999999879878
Q gi|254781120|r 333 DIVTFSECIKRSGYSS 348 (384)
Q Consensus 333 ~i~~F~~~L~~~Gi~~ 348 (384)
.++.|...+++.|+.+
T Consensus 176 l~eelk~~A~~~Gl~v 191 (322)
T COG2984 176 LVEELKKEARKAGLEV 191 (322)
T ss_pred HHHHHHHHHHHCCCEE
T ss_conf 9999999998779889
No 101
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=40.97 E-value=17 Score=17.23 Aligned_cols=28 Identities=18% Similarity=0.109 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCCC
Q ss_conf 8999999999998798785415877710
Q gi|254781120|r 331 QKDIVTFSECIKRSGYSSPIRTPRGLDI 358 (384)
Q Consensus 331 ~~~i~~F~~~L~~~Gi~~tiR~srG~DI 358 (384)
..+++...+++.+.++.+..=.+.|...
T Consensus 260 ~~R~~~~~ei~~~~~~~v~~i~~~g~s~ 287 (328)
T PRK08674 260 KERVEITKEILGASVIPVVEIDPRGNSP 287 (328)
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCH
T ss_conf 9999999999843698569995899888
No 102
>PRK09912 aldo-keto reductase; Provisional
Probab=40.58 E-value=28 Score=15.69 Aligned_cols=85 Identities=25% Similarity=0.370 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEEEEEECCC-CCCHHHHHHHHHHHC--CCCCEEEEEECCCCCCCCCCCCCHHHHHHH
Q ss_conf 78999999999998625894599999872699-988899999999832--545316675127788798868898999999
Q gi|254781120|r 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGI-NDSPRDALNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTF 337 (384)
Q Consensus 261 ~~l~~l~~a~~~y~~~~~~rrit~EYvli~gv-NDs~e~a~~L~~ll~--~~~~~vNLIp~N~~~~~~~~~~~~~~i~~F 337 (384)
.|+++.++++.+..+ . | +|- |+ || |-+++++.++.++++ ++++.+|-.+||... +.... ..+
T Consensus 144 ~p~ee~~~al~~l~~-~-G-kir--~i---GvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~----r~~e~---~~l 208 (346)
T PRK09912 144 TPMEETASALAHAVQ-S-G-KAL--YV---GISSYSPERTQKMVELLREWKIPLLIHQPSYNLLN----RWVDK---SGL 208 (346)
T ss_pred CCHHHHHHHHHHHHH-C-C-CEE--EE---EECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC----CCHHH---HHH
T ss_conf 887999999999998-4-9-500--78---42367899999999999861899651422013224----32468---889
Q ss_pred HHHHHHCCCEEEECCCCCCCCCC
Q ss_conf 99999879878541587771001
Q gi|254781120|r 338 SECIKRSGYSSPIRTPRGLDILA 360 (384)
Q Consensus 338 ~~~L~~~Gi~~tiR~srG~DI~a 360 (384)
....++.|+.+..+...+..+.+
T Consensus 209 l~~~~~~gi~~ia~sPLa~GlLt 231 (346)
T PRK09912 209 LDTLQNNGVGCIAFTPLAQGLLT 231 (346)
T ss_pred HHHHHHCCCEEEEECCHHHCCCC
T ss_conf 99999859869981505522024
No 103
>COG3220 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.40 E-value=28 Score=15.68 Aligned_cols=124 Identities=23% Similarity=0.278 Sum_probs=68.2
Q ss_pred EEEECCCCHHHH-HHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCH-------HHHHHHCCC-----CCCEEEEEECCCC
Q ss_conf 441014544542-899999960376845778775368885138741-------478860125-----6517998404551
Q gi|254781120|r 182 IVMMGMGEPLCN-FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP-------NIARVGEEI-----GVMLAISLHAVSN 248 (384)
Q Consensus 182 iVfMGmGEPl~N-~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p-------~I~~la~~~-----~~~LAiSLha~~~ 248 (384)
=-+||||-|+.+ ++.+..-.-+.. .|++ .|--|-.| +|+.|.+.. .-+|++|=|-..
T Consensus 35 EN~~~~GG~~~~~f~~~rer~Pv~l--HGls-------lslgg~~~ld~~~l~~~k~li~r~~~~~~SeHL~~~~~~g~- 104 (282)
T COG3220 35 ENWMGAGGPARAAFDAVRERLPVAL--HGLS-------LSLGGQAPLDLDLLRRIKALIKRYDPAFFSEHLSYCTDDGH- 104 (282)
T ss_pred HHHHHCCCHHHHHHHHHHHCCCEEE--EEEE-------ECCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHEEEECCCCE-
T ss_conf 4543136828889999986088465--3011-------12478999899999999999987370254221146426983-
Q ss_pred HHHHHHCCCCCCC-CHHHHHHHHHHHHHHCCCCEEEEE----EEEECCCCCCHHHHHHHHHHHCCCCCE----EEEEECC
Q ss_conf 1344412331257-899999999999862589459999----987269998889999999983254531----6675127
Q gi|254781120|r 249 DLRNILVPINRKY-PLEMLIDACRHYPGLSNARRITFE----YVMLKGINDSPRDALNLIKILKGIPAK----INLIPFN 319 (384)
Q Consensus 249 ~~R~~lmPi~~~~-~l~~l~~a~~~y~~~~~~rrit~E----Yvli~gvNDs~e~a~~L~~ll~~~~~~----vNLIp~N 319 (384)
.- -|+|.-..= .++.+-+-+++.+..- +|++.+| |+..+ +....+.+.|.+++..-.|- ||=|..|
T Consensus 105 -~y-DLlPlP~teea~~~va~~I~~~Qd~L-erplllEN~s~Y~~~~--~~~m~E~~FL~al~~~~~CglLLDvNNiyVn 179 (282)
T COG3220 105 -LY-DLLPLPFTEEAVDHVAARIREVQDVL-ERPLLLENPSYYLHSP--CSAMNEVEFLNALAREAGCGLLLDVNNIYVN 179 (282)
T ss_pred -EE-CCCCCCCCHHHHHHHHHHHHHHHHHH-CCCEEECCCCCCCCCC--CCCCCHHHHHHHHHHHCCCCEEEEECCEEEE
T ss_conf -30-15667651999999999999999986-6863630730102566--5431379999999986299789961432785
Q ss_pred C
Q ss_conf 7
Q gi|254781120|r 320 P 320 (384)
Q Consensus 320 ~ 320 (384)
.
T Consensus 180 a 180 (282)
T COG3220 180 A 180 (282)
T ss_pred C
T ss_conf 0
No 104
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=40.30 E-value=28 Score=15.66 Aligned_cols=203 Identities=16% Similarity=0.216 Sum_probs=110.6
Q ss_pred CHHCCCCCCCCCCHHHCCCCHHHHHHHHHH-HHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCH-HHHHHHHHHHH
Q ss_conf 100486132244111027898999999999-9997222034444343444545861101441014544-54289999996
Q gi|254781120|r 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLL-ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP-LCNFDNVKKSL 201 (384)
Q Consensus 124 C~m~C~FCaTg~~G~~RNLt~~EIv~Qv~~-~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEP-l~N~d~v~~ai 201 (384)
|.-.|.||.--+. -+..+.++.++- +.+.++... ......+++| +-||-|=|-| ++.-+.+.+-+
T Consensus 66 C~~~C~yC~F~~~-----~~~~~~~~~Y~~aL~~Ei~~~~-------~~~~~~~~~i-~tvy~GGGTPs~L~~~~l~~l~ 132 (447)
T PRK09058 66 CRTHCTFCGFFQN-----AWNPELVARYTDALIRELAMEA-------DSPLTQSAPI-HAVYFGGGTPTALSADDLARLI 132 (447)
T ss_pred CCCCCCCCCCCCC-----CCCCCCHHHHHHHHHHHHHHHH-------CCCCCCCCEE-EEEEEECCHHHHCCHHHHHHHH
T ss_conf 1586899988484-----8881209999999999999985-------4101269816-8999808634748999999999
Q ss_pred HCCCCCCCCCCCCC-EEEEEEC--CCC-HHHHHHHCCCCC-CEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 03768457787753-6888513--874-147886012565-179984045511344412331257899999999999862
Q gi|254781120|r 202 SIASDSMGLSFSKR-RITLSTS--GFV-PNIARVGEEIGV-MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276 (384)
Q Consensus 202 ~~l~~~~g~~~~~r-~ITvST~--Gi~-p~I~~la~~~~~-~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~y~~~ 276 (384)
+.+... |.+++. -|||=.- .+- .+++.+. +.+| ++-+-+.+-+++.++.+ +|.++-+++++++....+
T Consensus 133 ~~i~~~--f~l~~d~EiTiE~nP~~~~~~~l~~l~-~~GvNRiSiGVQSf~~~vlk~l---gR~h~~~~~~~~l~~l~~- 205 (447)
T PRK09058 133 EALREY--LPLAPDCEITLEGRINGFDDEKIDAAL-DAGANRFSFGVQSFNTQVRRRA---GRKDDREEVLAFLEELVA- 205 (447)
T ss_pred HHHHHH--CCCCCCCEEEEECCCCCCCHHHHHHHH-HCCCCEEEEECCCCCHHHHHHC---CCCCCHHHHHHHHHHHHH-
T ss_conf 999976--899888469883387879999999999-6499805772544888899864---799999999999999997-
Q ss_pred CCCCEEEEEEEEECCCC-CCHHHHHH-HHHHHCCCCCEEEEEECCCCCCCCCC----------CCCHHHHHH----HHHH
Q ss_conf 58945999998726999-88899999-99983254531667512778879886----------889899999----9999
Q gi|254781120|r 277 SNARRITFEYVMLKGIN-DSPRDALN-LIKILKGIPAKINLIPFNPWPGCEYL----------CSDQKDIVT----FSEC 340 (384)
Q Consensus 277 ~~~rrit~EYvli~gvN-Ds~e~a~~-L~~ll~~~~~~vNLIp~N~~~~~~~~----------~~~~~~i~~----F~~~ 340 (384)
.....|.+ =||=|+- -+.++-.+ |-..+.--+-+|-+..++-.|+.++. +++.+.... -.+.
T Consensus 206 ~g~~~ini--DLIyGlPgQT~e~~~~dl~~~~~l~p~his~Y~L~~~~~t~~~~~~~~g~l~~~~d~~~~~~my~~a~~~ 283 (447)
T PRK09058 206 RDRAAVVC--DLIFGLPGQTPEIWQQDLAIVRDLGLDGVDLYALNVLPGTPLAKAVEKGKLPPPATPAEQADMYAYGVEF 283 (447)
T ss_pred CCCCCEEE--HHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 49963764--7642798899999999999996459986887654504897799998749999985999999999999999
Q ss_pred HHHCCCEE
Q ss_conf 99879878
Q gi|254781120|r 341 IKRSGYSS 348 (384)
Q Consensus 341 L~~~Gi~~ 348 (384)
|.++|+.-
T Consensus 284 L~~~Gy~~ 291 (447)
T PRK09058 284 LAQAGWRQ 291 (447)
T ss_pred HHHCCCEE
T ss_conf 99779908
No 105
>pfam02353 CMAS Cyclopropane-fatty-acyl-phospholipid synthase. This family consist of Cyclopropane-fatty-acyl-phospholipid synthase or CFA synthase EC:2.1.1.79 this enzyme catalyse the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid <= S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid.
Probab=38.79 E-value=30 Score=15.50 Aligned_cols=138 Identities=17% Similarity=0.089 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCC--CCCCCCCCEEEEECCCCHH--HHHHHHHHHHHCCCCCCCCCCCCCEEEEEECC
Q ss_conf 9999999997222034444343444--5458611014410145445--42899999960376845778775368885138
Q gi|254781120|r 148 LLQVLLARSLLGDFPGCEDIEGMVI--PSVGRKISNIVMMGMGEPL--CNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223 (384)
Q Consensus 148 v~Qv~~~~~~l~~~~~~~~~~~~~~--~~~~~~i~NiVfMGmGEPl--~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~G 223 (384)
.+|.-.+++.+.+.+.......... .....+-..||-.||-|-+ .||+...+.+..+..|.|.- -|-|.+
T Consensus 95 ~~Q~~~~~~r~~~~gl~~~v~v~~~Dyrd~~~~fD~IvSiem~Ehvg~~~~~~~f~~i~~~LkpgG~~------~iq~i~ 168 (273)
T pfam02353 95 KNQYKLARQRVAAEGLQRKVEVLLQDYRDFDEPFDRIVSVGMFEHVGHENYDTFFKKLYNLLPPGGLM------LLHTIT 168 (273)
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEECCHHHCCCCCCEEEEEHHHHHCCHHHHHHHHHHHHHHCCCCCEE------EEEEEE
T ss_conf 89999999999870874321200062654766666677651687628777999999999865889739------999994
Q ss_pred CCHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHH
Q ss_conf 74147886012565179984045511344412331257899999999999862589459999987269998889999999
Q gi|254781120|r 224 FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 (384)
Q Consensus 224 i~p~I~~la~~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~ 303 (384)
.+.. .... .-..+.+=+++-|-|-..--++.++++++.+ + +- .+..=.|.+...|+-|.
T Consensus 169 ~~~~-~~~~---------~~~~~~~fi~kyIFPGG~lPs~~~~~~~~~~----~-~l------~v~~~~~~g~HYa~TL~ 227 (273)
T pfam02353 169 GLHP-DETS---------ERGLPLKFIDKYIFPGGELPSISMIVESSSE----A-GF------TVEDVESLRPHYAKTLD 227 (273)
T ss_pred CCCC-CCHH---------HCCCCCCHHHHHCCCCCCCCCHHHHHHHHHH----C-CC------EEEEEEECCHHHHHHHH
T ss_conf 2573-2101---------0277420077760799878999999999986----8-94------88676767365999999
Q ss_pred HHHCCCCCE
Q ss_conf 983254531
Q gi|254781120|r 304 KILKGIPAK 312 (384)
Q Consensus 304 ~ll~~~~~~ 312 (384)
.+.+.+..+
T Consensus 228 ~W~~nf~~n 236 (273)
T pfam02353 228 LWAENLQAN 236 (273)
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 106
>pfam02446 Glyco_hydro_77 4-alpha-glucanotransferase. These enzymes EC:2.4.1.25 transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan.
Probab=38.39 E-value=30 Score=15.46 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=15.8
Q ss_pred CCEEEEEECCCCHHCCCCCCCCCC
Q ss_conf 733898840651004861322441
Q gi|254781120|r 113 RGTLCVSSQVGCSLTCSFCYTGTQ 136 (384)
Q Consensus 113 r~T~CvSSQvGC~m~C~FCaTg~~ 136 (384)
+.-.|+.-++|||=. .|..+|+.
T Consensus 228 ~~~F~l~~~~GaPPD-~Fs~~GQ~ 250 (494)
T pfam02446 228 PDLFCLNASAGAPPD-YFSETGQN 250 (494)
T ss_pred HHHHHCCCEECCCCC-CCCCCCCC
T ss_conf 978756787756998-87736577
No 107
>PRK08363 alanine aminotransferase; Validated
Probab=37.93 E-value=31 Score=15.41 Aligned_cols=20 Identities=10% Similarity=0.051 Sum_probs=10.1
Q ss_pred HHH-HHHHHCCCEEEECCCCC
Q ss_conf 999-99998798785415877
Q gi|254781120|r 336 TFS-ECIKRSGYSSPIRTPRG 355 (384)
Q Consensus 336 ~F~-~~L~~~Gi~~tiR~srG 355 (384)
+|. +.|.+.|+.++=-...|
T Consensus 343 ef~~~ll~e~gV~v~PG~~Fg 363 (398)
T PRK08363 343 EFVLDLLHEAHVLFVHGSGFG 363 (398)
T ss_pred HHHHHHHHHCCEEEECCHHHC
T ss_conf 999999985999998964328
No 108
>TIGR01017 rpsD_bact ribosomal protein S4; InterPro: IPR005709 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . The S4 domain is a small domain consisting of 60-65 amino acid residues that probably mediates binding to RNA. This family consists of organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.
Probab=37.33 E-value=22 Score=16.53 Aligned_cols=37 Identities=8% Similarity=0.301 Sum_probs=21.1
Q ss_pred CCCCCEEEE-ECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE
Q ss_conf 861101441-01454454289999996037684577877536888
Q gi|254781120|r 176 GRKISNIVM-MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITL 219 (384)
Q Consensus 176 ~~~i~NiVf-MGmGEPl~N~d~v~~ai~~l~~~~g~~~~~r~ITv 219 (384)
..|+.|||| ||| ...+.+.+=|.+.--.-+--|+++|
T Consensus 99 E~RLDNvVYRlGf-------A~Tr~~ARQLVsHGhi~vNGk~VdI 136 (217)
T TIGR01017 99 ESRLDNVVYRLGF-------APTRRAARQLVSHGHILVNGKKVDI 136 (217)
T ss_pred HCCCCCEEECCCC-------HHHHHHHHHHHHCCEEEECCEEECC
T ss_conf 1100101021271-------2007876356408807879818522
No 109
>pfam00248 Aldo_ket_red Aldo/keto reductase family. This family includes a number of K+ ion channel beta chain regulatory domains - these are reported to have oxidoreductase activity.
Probab=37.22 E-value=32 Score=15.33 Aligned_cols=89 Identities=16% Similarity=0.143 Sum_probs=45.0
Q ss_pred EEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 98404551134441233125789999999999986258945999998726999888999999998325453166751277
Q gi|254781120|r 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 (384)
Q Consensus 241 iSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N~ 320 (384)
+-||.|+. ..+++++++++.+..+.-.-|.|-+ . |-+.++..++.+. ...+..+|-++||+
T Consensus 103 ~~lH~~~~-----------~~~~~e~~~~l~~lk~~Gkir~iGv-----S--n~~~~~l~~~~~~-~~~~~~~~Q~~yn~ 163 (273)
T pfam00248 103 YLLHWPDP-----------SLPIEETLEALEELKKEGKIRHIGV-----S--NFSVEQLRKALEH-GKVPIVVVQVEYSL 163 (273)
T ss_pred HHCCCCCC-----------CCCHHHHHHHHHHHHHCCCCCEEEE-----C--CCCHHHHHHHHHH-CCCCCEEEECCCCH
T ss_conf 53168997-----------7898999999999998699887985-----7--8999999999972-89985001011021
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCC
Q ss_conf 887988688989999999999987987854158777
Q gi|254781120|r 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 (384)
Q Consensus 321 ~~~~~~~~~~~~~i~~F~~~L~~~Gi~~tiR~srG~ 356 (384)
... .+ ...+.+..+++|+.+..+.+.|+
T Consensus 164 ~~~----~~----~~~l~~~~~~~~i~v~a~spl~~ 191 (273)
T pfam00248 164 LRR----LA----EEGLLELCQENGIGIIAYSPLGG 191 (273)
T ss_pred HHH----HH----HHHHHHHHHHCCCEEEEECCCCC
T ss_conf 002----65----79999999982998999736657
No 110
>pfam10369 ALS_ss_C Small subunit of acetolactate synthase. ALS_ss_C is the C-terminal half of a family of proteins which are the small subunits of acetolactate synthase. Acetolactate synthase is a tetrameric enzyme, containing probably two large and two small subunits, which catalyses the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides.
Probab=36.93 E-value=32 Score=15.30 Aligned_cols=65 Identities=22% Similarity=0.251 Sum_probs=38.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECC
Q ss_conf 99872699988899999999832545316675127788798868898999999999998798785415
Q gi|254781120|r 285 EYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 (384)
Q Consensus 285 EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N~~~~~~~~~~~~~~i~~F~~~L~~~Gi~~tiR~ 352 (384)
|.+|+|=..+ .++-.++.+++.-+.++| |.+++-.-.---.-+.+++++|.+.|+..|+.=.+|.
T Consensus 3 El~LvKV~~~-~~~r~~i~~l~~~f~a~i--vd~~~~~~iiE~tG~~~kid~fi~~l~~~gI~EivRt 67 (75)
T pfam10369 3 ELALVKVRAT-GETRAEILRIADIFRAKI--VDVTPDSYTIELTGDPEKIDAFIDLLRPFGILEVVRT 67 (75)
T ss_pred EEEEEEEECC-HHHHHHHHHHHHHHCCEE--EEECCCEEEEEEECCHHHHHHHHHHHHHHCCEEEEEC
T ss_conf 7999999767-642999999999809899--9703888999993998999999998766097999953
No 111
>TIGR01158 SUI1_rel translation initation factor SUI1, putative; InterPro: IPR005872 This family of archaeal and bacterial proteins is homologous to the eukaryotic translation intiation factor SUI1 involved in directing the ribosome to the proper start site of translation by functioning in concert with eIF-2 and the initiator tRNA-Met.; GO: 0003743 translation initiation factor activity, 0006412 translation.
Probab=35.57 E-value=33 Score=15.15 Aligned_cols=53 Identities=21% Similarity=0.262 Sum_probs=36.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCC-----CEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf 99872699988899999999832545-----31667512778879886889899999999999879878
Q gi|254781120|r 285 EYVMLKGINDSPRDALNLIKILKGIP-----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSS 348 (384)
Q Consensus 285 EYvli~gvNDs~e~a~~L~~ll~~~~-----~~vNLIp~N~~~~~~~~~~~~~~i~~F~~~L~~~Gi~~ 348 (384)
+-++|+|++-+..+..+|++-||.+- +|=+-| +.+.-.. +...++|.+.|+.+
T Consensus 49 ~VTiI~Gld~~~~~L~~LAk~LK~~cacGGTvKdG~I--------ElQGdhr---~~~~~~L~~~GF~~ 106 (111)
T TIGR01158 49 GVTIIEGLDLSDIDLKELAKELKSKCACGGTVKDGVI--------ELQGDHR---ERVKDLLLKKGFKV 106 (111)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEECCEE--------EECCCHH---HHHHHHHHHCCCCC
T ss_conf 4788615783367899999987788468974036816--------8605527---88999999658960
No 112
>TIGR02846 spore_sigmaK RNA polymerase sigma-K factor; InterPro: IPR014209 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognized by the major sigma factors , . The sporulation-specific transcription factor sigma-K (also called sigma-27) is expressed in the mother cell compartment of endospore-forming bacteria such as Bacillus subtilis. Like its close homologue sigma-E (sigma-29, see IPR014200 from INTERPRO), also specific to the mother cell compartment, it must be activated by a proteolytic cleavage. Note: that in Bacillus subtilis (and apparently also in Clostridium tetani), but not in other endospore forming species such as Bacillus anthracis, the sigK gene is generated by a non-germline (mother cell only) chromosomal rearrangement that recombines coding regions for the N-terminal and C-terminal regions of sigma-K .; GO: 0003677 DNA binding, 0003700 transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, 0006355 regulation of transcription DNA-dependent.
Probab=35.43 E-value=10 Score=18.90 Aligned_cols=73 Identities=22% Similarity=0.357 Sum_probs=41.4
Q ss_pred EEEEECCCCHHHHHHHCCCCCCEE------------------------EEEECCCCHHH---------------HHHC-C
Q ss_conf 888513874147886012565179------------------------98404551134---------------4412-3
Q gi|254781120|r 217 ITLSTSGFVPNIARVGEEIGVMLA------------------------ISLHAVSNDLR---------------NILV-P 256 (384)
Q Consensus 217 ITvST~Gi~p~I~~la~~~~~~LA------------------------iSLha~~~~~R---------------~~lm-P 256 (384)
|+|-|+|+..+|+-|..+-+.+|| ||||-|.=--+ +.+. -
T Consensus 79 ISIGTiGLIKAidsf~~~KGt~LATYAArCiENEILM~lR~~KK~k~eV~L~DPIG~DKEGNEIsL~DiL~~~~d~v~e~ 158 (228)
T TIGR02846 79 ISIGTIGLIKAIDSFDPEKGTRLATYAARCIENEILMHLRALKKTKGEVSLQDPIGVDKEGNEISLIDILGSDEDSVIEQ 158 (228)
T ss_pred HCCCCHHEECCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCEEEEEECCCCCCCHHHHH
T ss_conf 10022010001102247877315667866534789999974367478332107888676764230000016887316888
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCE--EEEEEEEECC
Q ss_conf 3125789999999999986258945--9999987269
Q gi|254781120|r 257 INRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKG 291 (384)
Q Consensus 257 i~~~~~l~~l~~a~~~y~~~~~~rr--it~EYvli~g 291 (384)
+.++..++.|-..+..-. ..+.| |..=|=|-++
T Consensus 159 v~~~~~~~~l~~~~~~~L--~~rE~~vi~~RyGL~~~ 193 (228)
T TIGR02846 159 VEKKLEIKKLYKKLNSVL--KGREREVIEMRYGLKDG 193 (228)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHCCCCCC
T ss_conf 886445999999999874--08889999874366888
No 113
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=34.75 E-value=23 Score=16.30 Aligned_cols=193 Identities=15% Similarity=0.212 Sum_probs=84.8
Q ss_pred CCCHHCCCCCCCCCCHHHCCCCHHHHHH--HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHH-
Q ss_conf 6510048613224411102789899999--9999999722203444434344454586110144101454454289999-
Q gi|254781120|r 122 VGCSLTCSFCYTGTQKLVRNLTAEEILL--QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVK- 198 (384)
Q Consensus 122 vGC~m~C~FCaTg~~G~~RNLt~~EIv~--Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl~N~d~v~- 198 (384)
-||++.|.=|.--+..+-..|+..|.-. ++.--++.+. .+=+..-.|||..++=-|.
T Consensus 4 ~~~~~~c~~C~~r~~~~f~~L~~~el~~l~~~~~r~r~~~--------------------kGe~Lf~eGd~~~~ly~V~s 63 (235)
T PRK11161 4 GGCAIHCQDCSISQLCIPFTLNEHELDQLDNIIERKKPIQ--------------------KGQTLFKAGDELKSLYAIRS 63 (235)
T ss_pred CCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHEEEEEC--------------------CCCEEECCCCCCCEEEEEEE
T ss_conf 9987079899896456076899999999998987404568--------------------99987789598770899977
Q ss_pred HHHHCCCCCCCCCCCCCEEEEEE--CCCCHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99603768457787753688851--3874147886012565179984045511344412331257899999999999862
Q gi|254781120|r 199 KSLSIASDSMGLSFSKRRITLST--SGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276 (384)
Q Consensus 199 ~ai~~l~~~~g~~~~~r~ITvST--~Gi~p~I~~la~~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~y~~~ 276 (384)
..+++.. ..-+-|.++++- .|-+-|..-+.......-|..+..+ .--.+| .+.+.+.+..+|..
T Consensus 64 G~Vkl~~----~~~~Gke~il~~~~pGd~~G~~~l~~~~~~~~a~Al~~s----~v~~i~------~~~~~~l~~~~p~l 129 (235)
T PRK11161 64 GTIKSYT----ITEQGDEQITGFHLAGDLVGFDAIGSGHHPSFAQALETS----MVCEIP------FETLDDLSGKMPKL 129 (235)
T ss_pred CEEEEEE----ECCCCCEEEEEEECCCCEECHHHHCCCCCCCEEEEECCC----EEEEEE------HHHHHHHHHHCHHH
T ss_conf 9599999----998978899998037765020031379885304770455----089988------89999999779899
Q ss_pred CC------CCEE--EEEEEEECCCCCC-HHHHHHHHHHHCCCC------CEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 58------9459--9999872699988-899999999832545------3166751277887988688989999999999
Q gi|254781120|r 277 SN------ARRI--TFEYVMLKGINDS-PRDALNLIKILKGIP------AKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341 (384)
Q Consensus 277 ~~------~rri--t~EYvli~gvNDs-~e~a~~L~~ll~~~~------~~vNLIp~N~~~~~~~~~~~~~~i~~F~~~L 341 (384)
.. .+++ ..+.+..-+..+. ..=|..|..|..... ..+. +|+..-+-..+-..+.+.+......|
T Consensus 130 ~~~l~~~ls~rl~~~~~~i~~l~~~~~~~Rla~~Ll~L~~~~g~~~~~~~~i~-l~lt~~dLA~~lG~trEtVsR~L~~L 208 (235)
T PRK11161 130 RQQIMRLMSGEIKGDQEMILLLSKKNAEERLAAFIYNLSRRFAQRGFSPREFR-LTMTRGDIGNYLGLTVETISRLLGRF 208 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCEEE-ECCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999999999999999999983389999999999999998387788887798-23789999988789899999999999
Q ss_pred HHCCCEEE
Q ss_conf 98798785
Q gi|254781120|r 342 KRSGYSSP 349 (384)
Q Consensus 342 ~~~Gi~~t 349 (384)
++.|+...
T Consensus 209 ~~~GlI~~ 216 (235)
T PRK11161 209 QKSGMLAV 216 (235)
T ss_pred HHCCCEEE
T ss_conf 97897997
No 114
>pfam10443 RNA12 RNA12 protein. This family includes RNA12 from S. cerevisiae. That protein contains an RRM domain. This region is C-terminal to that and includes a P-loop motif suggesting this region binds to NTP. The RNA12 proteins is involved in pre-rRNA maturation.
Probab=34.60 E-value=35 Score=15.04 Aligned_cols=107 Identities=19% Similarity=0.205 Sum_probs=65.0
Q ss_pred CHHHHHHCCCCCCC-CHHHHHH----------HHHHHHHHCCCCEEEEEEEEE-----CCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 11344412331257-8999999----------999998625894599999872-----6999888999999998325453
Q gi|254781120|r 248 NDLRNILVPINRKY-PLEMLID----------ACRHYPGLSNARRITFEYVML-----KGINDSPRDALNLIKILKGIPA 311 (384)
Q Consensus 248 ~~~R~~lmPi~~~~-~l~~l~~----------a~~~y~~~~~~rrit~EYvli-----~gvNDs~e~a~~L~~ll~~~~~ 311 (384)
+++...|-|...++ .|+-+.. |+.+....+- --|+=.|++- ++-+=+.+.|=.|++.+..-+.
T Consensus 256 ~eld~~i~~LGGR~tDLe~l~rRiksGesp~~Av~~iI~Qsa-~eI~k~fl~~~~~~~~~~~Wt~eQaW~lIk~La~~~~ 334 (428)
T pfam10443 256 KELDSCIEPLGGRMTDLQALARRIKSGESPEEAVSDIISQAA-SEILKMFLGDSKGGASDLKWTREQAWELIKKLSKNGS 334 (428)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 789999997266289999999998758987999999999899-9999998068876656799889999999999713895
Q ss_pred EEEEEECCCCCCCC-CCCCCHHHHHHHHHHHHHCCCEEEECCCCCC--CCCCCCCC
Q ss_conf 16675127788798-8688989999999999987987854158777--10011200
Q gi|254781120|r 312 KINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGL--DILAACGQ 364 (384)
Q Consensus 312 ~vNLIp~N~~~~~~-~~~~~~~~i~~F~~~L~~~Gi~~tiR~srG~--DI~aACGQ 364 (384)
||||.+--++ |+...+..+. -|.++++.+..+ -+|. .|-++=--
T Consensus 335 ----v~Y~~ll~~~lFk~~~E~~l~----~LE~aeLIsv~~-~~Grp~~I~pGkPv 381 (428)
T pfam10443 335 ----IPYNELLLSPLFKGSGETALR----ALEQAELISVTR-DNGRPSKIRAGKPV 381 (428)
T ss_pred ----CCHHHHHHCCCCCCCCHHHHH----HHHHCCCEEEEE-CCCCCCCCCCCCHH
T ss_conf ----319998843102698279999----998679479982-48835665489815
No 115
>PRK11914 diacylglycerol kinase; Reviewed
Probab=34.07 E-value=35 Score=14.98 Aligned_cols=51 Identities=16% Similarity=0.163 Sum_probs=18.6
Q ss_pred HHHHHHHCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCEEE
Q ss_conf 99999871799967833478899999862022578702346531454430377
Q gi|254781120|r 38 IWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLL 90 (384)
Q Consensus 38 I~~wiy~k~v~~f~~MtnLpk~lR~~L~e~~~i~~l~iv~~~~S~DGT~K~L~ 90 (384)
+...+-++++.-....|.-+...++...+... .....+- -..-|||.--..
T Consensus 29 i~~~l~~~g~~~~~~~t~~~~~a~~la~~a~~-~g~d~vv-~~GGDGTv~ev~ 79 (304)
T PRK11914 29 AIARLHHRGVDVVEIVGTDAHHARHLVAAALA-KGTDALV-VVGGDGVISNAL 79 (304)
T ss_pred HHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH-CCCCEEE-EEECCHHHHHHH
T ss_conf 99999987990999932787899999998886-4996999-995625988987
No 116
>pfam00682 HMGL-like HMGL-like. This family contains a diverse set of enzymes. These include various aldolases and a region of pyruvate carboxylase.
Probab=34.04 E-value=35 Score=14.98 Aligned_cols=85 Identities=15% Similarity=0.187 Sum_probs=45.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEE
Q ss_conf 78989999999999997222034444343444545861101441014544542899999960376845778775368885
Q gi|254781120|r 141 NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLS 220 (384)
Q Consensus 141 NLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl~N~d~v~~ai~~l~~~~g~~~~~r~ITvS 220 (384)
|.+..|+++.+.-+-.+..+. +. .+.|..+-++-.+.+.+.+.++.+. .+|..+|.++
T Consensus 100 ~~s~~~~l~~~~~~i~~a~~~--------------g~---~v~f~~~~~~~~~~~~~~~~~~~~~-----~~G~~~i~l~ 157 (237)
T pfam00682 100 NKDREEVADRAVAAVEAARSA--------------GI---DVELGCEDAGRTDLAFLIEVVEVAQ-----EAGATRINIA 157 (237)
T ss_pred CCCHHHHHHHHHHHHHHHHHC--------------CC---EEEEEECCCCCCCHHHHHHHHHHHH-----HCCCCEEEEC
T ss_conf 789999999999999999986--------------99---0588405123247889999999998-----6198579736
Q ss_pred -ECCCC--HHHHHHH----CCCCCCEEEEEECCCC
Q ss_conf -13874--1478860----1256517998404551
Q gi|254781120|r 221 -TSGFV--PNIARVG----EEIGVMLAISLHAVSN 248 (384)
Q Consensus 221 -T~Gi~--p~I~~la----~~~~~~LAiSLha~~~ 248 (384)
|+|.. ..++.+. +..+ ...|++|.-|+
T Consensus 158 DT~G~~~P~~v~~lv~~l~~~~~-~~~i~~H~Hn~ 191 (237)
T pfam00682 158 DTVGVLTPNEAADLISALKDRVP-PVIIEVHCHND 191 (237)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCC-CCCEEEEECCC
T ss_conf 86455798999999999997089-87158874488
No 117
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=33.55 E-value=36 Score=14.93 Aligned_cols=38 Identities=21% Similarity=0.018 Sum_probs=15.5
Q ss_pred CCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 51799840455113444123312578999999999998
Q gi|254781120|r 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274 (384)
Q Consensus 237 ~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~y~ 274 (384)
+.+.+=+...||--.....+.....+.+++.+.+++..
T Consensus 75 ~~~ViI~~G~ND~~~~~~~~~~~~~~~~~~~~~y~~li 112 (204)
T cd01830 75 VRTVIILEGVNDIGASGTDFAAAPVTAEELIAGYRQLI 112 (204)
T ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 98899981453567677776666779999999999999
No 118
>pfam11995 DUF3490 Domain of unknown function (DUF3490). This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is about 160 amino acids in length. This domain is found associated with pfam00225. This domain is found associated with pfam00225. This domain has two conserved sequence motifs: EVE and ESA.
Probab=33.00 E-value=36 Score=14.86 Aligned_cols=14 Identities=14% Similarity=0.245 Sum_probs=5.6
Q ss_pred CCEEEEEEEEECCC
Q ss_conf 94599999872699
Q gi|254781120|r 279 ARRITFEYVMLKGI 292 (384)
Q Consensus 279 ~rrit~EYvli~gv 292 (384)
+||.-+.+-|.-+-
T Consensus 114 qRrLQl~~rLWtd~ 127 (165)
T pfam11995 114 RRRLQLANKLWTDP 127 (165)
T ss_pred HHHHHHHHHHHCCC
T ss_conf 77999999984795
No 119
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=32.78 E-value=37 Score=14.84 Aligned_cols=165 Identities=18% Similarity=0.192 Sum_probs=79.9
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECC-CC-HHHHHHHHHHHHHCCCC-CCCCCCCCC
Q ss_conf 0278989999999999997222034444343444545861101441014-54-45428999999603768-457787753
Q gi|254781120|r 139 VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM-GE-PLCNFDNVKKSLSIASD-SMGLSFSKR 215 (384)
Q Consensus 139 ~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGm-GE-Pl~N~d~v~~ai~~l~~-~~g~~~~~r 215 (384)
.++|+..++++-+.-.-+.... ..+-.+ ++++-.+ +. |-...+.+--|++.-.. --|++++--
T Consensus 101 ~~~l~~~~~~~a~~~~~~~a~~-------------~~~i~~-~lI~~~~R~~~~e~a~~~~~~a~~~~~~~vvGidl~G~ 166 (325)
T cd01320 101 RRGLSFDEVVEAVLRGLDEAEA-------------EFGIKA-RLILCGLRHLSPESAQETLELALKYRDKGVVGFDLAGD 166 (325)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH-------------CCCCEE-EEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 0698677779999999987650-------------079369-99875267799999999999999716787788425786
Q ss_pred EEEEEECCCCHHHHHHHC---C-CCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECC
Q ss_conf 688851387414788601---2-565179984045511344412331257899999999999862589459999987269
Q gi|254781120|r 216 RITLSTSGFVPNIARVGE---E-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291 (384)
Q Consensus 216 ~ITvST~Gi~p~I~~la~---~-~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~y~~~~~~rrit~EYvli~g 291 (384)
- .|-+ ...|+. . -.-+|-+++||.-.. +.+.+.+|+..+- -.||-=-|-++++
T Consensus 167 E-----~~~~--~~~f~~~f~~a~~~gl~~t~HaGE~~------------~~~~v~~ai~~l~----~~RIGHG~~~~~d 223 (325)
T cd01320 167 E-----VGFP--PEKFVRAFQRAREAGLRLTAHAGEAG------------GPESVRDALDLLG----AERIGHGIRAIED 223 (325)
T ss_pred C-----CCCC--HHHHHHHHHHHHHCCCEEEEECCCCC------------CHHHHHHHHHCCC----CCEECCCCCCCCC
T ss_conf 6-----7898--68999999999985984566458889------------8288999986049----8643264113469
Q ss_pred CCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECC
Q ss_conf 9988899999999832545316675127788798868898999999999998798785415
Q gi|254781120|r 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 (384)
Q Consensus 292 vNDs~e~a~~L~~ll~~~~~~vNLIp~N~~~~~~~~~~~~~~i~~F~~~L~~~Gi~~tiR~ 352 (384)
.+|.++++.....|.+-|--..--..+..... .-|. .+.+.|++++|-.
T Consensus 224 --------~~l~~~l~~~~I~lEiCptSN~~~~~v~~~~~---HPi~-~~~~~gv~v~i~T 272 (325)
T cd01320 224 --------PELVKRLAERNIPLEVCPTSNVQTGAVKSLAE---HPLR-ELLDAGVKVTINT 272 (325)
T ss_pred --------HHHHHHHHHCCCEEEECCCCCHHCCCCCCCCC---CHHH-HHHHCCCEEEEEC
T ss_conf --------99999998609727876653211057888778---7299-9998799299958
No 120
>pfam04008 Adenosine_kin Adenosine specific kinase. The structure of a member of this family from the hyperthermophilic archaeon Pyrobaculum aerophilum contains a modified histidine residue which is interpreted as stable phosphorylation. In vitro binding studies confirmed that adenosine and AMP but not ADP or ATP bind to the protein.
Probab=31.43 E-value=39 Score=14.68 Aligned_cols=71 Identities=23% Similarity=0.333 Sum_probs=40.9
Q ss_pred CCCEEEEEECCCCHHCCCCC-CCCCCHHHCCC-CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 77338988406510048613-22441110278-98999999999999722203444434344454586110144101454
Q gi|254781120|r 112 SRGTLCVSSQVGCSLTCSFC-YTGTQKLVRNL-TAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 (384)
Q Consensus 112 ~r~T~CvSSQvGC~m~C~FC-aTg~~G~~RNL-t~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGE 189 (384)
+=+-+-++|--|++.|-.|| |+|+. |.|-= +-.|.++-- +++-..- ..| -+=|+||+-|=
T Consensus 24 Dl~Ealv~s~p~ikFGiAFcEASG~~-LvR~~GnD~~L~~lA--~~na~~I-------------gAG--H~Fvi~l~~a~ 85 (155)
T pfam04008 24 DLYEALVTSVPGIKFGIAFCEASGPR-LVRYSGNDEELVELA--IENALAI-------------GAG--HTFVILLRDAY 85 (155)
T ss_pred HHHHHHHHCCCCCEEEEEEECCCCCE-EEEECCCCHHHHHHH--HHHHHHH-------------CCC--CEEEEEECCCC
T ss_conf 99999974389875899983167862-788428879999999--9999975-------------689--58999945737
Q ss_pred HHHHHHHHHHHHHCC
Q ss_conf 454289999996037
Q gi|254781120|r 190 PLCNFDNVKKSLSIA 204 (384)
Q Consensus 190 Pl~N~d~v~~ai~~l 204 (384)
|. ||+.+++-.
T Consensus 86 PI----NVLn~iK~v 96 (155)
T pfam04008 86 PI----NVLNAIKNV 96 (155)
T ss_pred CH----HHHHHHHCC
T ss_conf 73----788876147
No 121
>TIGR01344 malate_syn_A malate synthase A; InterPro: IPR006252 These sequences represent plant malate synthase and one of two bacterial forms, designated malate synthase A. This enzyme and isocitrate lyase are the two characteristic enzymes of the glyoxylate shunt. The shunt enables the cell to use acetyl-CoA to generate increased levels of TCA cycle intermediates for biosynthetic pathways such as gluconeogenesis.; GO: 0004474 malate synthase activity, 0006097 glyoxylate cycle.
Probab=31.27 E-value=25 Score=16.10 Aligned_cols=63 Identities=17% Similarity=0.340 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHH-HHHHHHHHCCC-CCEEEEEECCCCCCCCCCCCCHHHHHH
Q ss_conf 2578999999999998625894599999872699988899-99999983254-531667512778879886889899999
Q gi|254781120|r 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD-ALNLIKILKGI-PAKINLIPFNPWPGCEYLCSDQKDIVT 336 (384)
Q Consensus 259 ~~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~-a~~L~~ll~~~-~~~vNLIp~N~~~~~~~~~~~~~~i~~ 336 (384)
..|.++|++=.||++. -|.|++-+| .=..+|-|+.. +-+| .|+...-.=+..=+.+
T Consensus 238 AAFeMdEILyeLrEH~---------------~GLNCGRWDYIFS~IK~L~~~G~~~V-------LPDR~~vTM~kpFl~A 295 (522)
T TIGR01344 238 AAFEMDEILYELREHS---------------SGLNCGRWDYIFSFIKTLRKAGPEFV-------LPDRDAVTMDKPFLNA 295 (522)
T ss_pred HHHHHHHHHHHHHHHH---------------CCCCCCHHHHHHHHHHHHHHCCCCCC-------CCCCCEEECCCHHHHH
T ss_conf 2443578999887632---------------01366246788889887641688514-------6889703548476889
Q ss_pred HHHHHHH
Q ss_conf 9999998
Q gi|254781120|r 337 FSECIKR 343 (384)
Q Consensus 337 F~~~L~~ 343 (384)
+.+.|.+
T Consensus 296 Ys~lLI~ 302 (522)
T TIGR01344 296 YSKLLIQ 302 (522)
T ss_pred HHHHHHH
T ss_conf 9999974
No 122
>PRK13337 putative lipid kinase; Reviewed
Probab=31.18 E-value=39 Score=14.66 Aligned_cols=11 Identities=27% Similarity=0.284 Sum_probs=6.3
Q ss_pred ECCCCCCCEEE
Q ss_conf 31454430377
Q gi|254781120|r 80 ISCDGTRKWLL 90 (384)
Q Consensus 80 ~S~DGT~K~L~ 90 (384)
..-|||.--+.
T Consensus 65 ~GGDGTv~evv 75 (305)
T PRK13337 65 AGGDGTLNEVV 75 (305)
T ss_pred EECCHHHHHHH
T ss_conf 95762899999
No 123
>KOG2672 consensus
Probab=31.17 E-value=16 Score=17.60 Aligned_cols=116 Identities=14% Similarity=0.155 Sum_probs=60.7
Q ss_pred CHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCC--CCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHH
Q ss_conf 4147886012565179984045511344412331--25789999999999986258945999998726999888999999
Q gi|254781120|r 225 VPNIARVGEEIGVMLAISLHAVSNDLRNILVPIN--RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 (384)
Q Consensus 225 ~p~I~~la~~~~~~LAiSLha~~~~~R~~lmPi~--~~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L 302 (384)
...++.+|.. .| -..|-|=|+=.+|-|.- ++-...+-+..+++-- .+.-.-||=--+|+. .-.++|...+.
T Consensus 204 ~~~Ve~va~S---GL--DV~AHNvETVe~Ltp~VRD~RA~yrQSL~VLk~aK-~~~P~litktsiMlg-lgetdeei~~t 276 (360)
T KOG2672 204 LKAVEKVAKS---GL--DVYAHNVETVEELTPFVRDPRANYRQSLSVLKHAK-EVKPGLITKTSIMLG-LGETDEEIKQT 276 (360)
T ss_pred HHHHHHHHHC---CC--CCEECCHHHHHHCCHHHCCCCCCHHHHHHHHHHHH-HHCCCCEEHHHHHHC-CCCCHHHHHHH
T ss_conf 4799999853---74--00001114087602333185401677699999877-518870120210002-67888999999
Q ss_pred HHHHCCCCCEEE-EEECCC-CC----CCCCCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf 998325453166-751277-88----798868898999999999998798785
Q gi|254781120|r 303 IKILKGIPAKIN-LIPFNP-WP----GCEYLCSDQKDIVTFSECIKRSGYSSP 349 (384)
Q Consensus 303 ~~ll~~~~~~vN-LIp~N~-~~----~~~~~~~~~~~i~~F~~~L~~~Gi~~t 349 (384)
.+.++...+-|- +=.|-+ +. -..|..| +.-+.+..+=...|+..+
T Consensus 277 l~dLr~~~vdv~t~gqym~ptkrhl~v~eyvtp--ekf~~w~~~~~~lgf~y~ 327 (360)
T KOG2672 277 LKDLRAADVDVVTFGQYMQPTKRHLKVKEYVTP--EKFDYWKEYGEELGFLYV 327 (360)
T ss_pred HHHHHHCCCCEEECCCCCCCCCCCCEEEEEECH--HHHHHHHHHHHHCCEEEE
T ss_conf 999997197088400005775344314785387--887899997551454896
No 124
>pfam10906 DUF2697 Protein of unknown function (DUF2697). This is a eukaryotic family of proteins with unknown function.
Probab=30.91 E-value=22 Score=16.45 Aligned_cols=43 Identities=16% Similarity=0.196 Sum_probs=32.6
Q ss_pred HHHHHHHCCCCCEEEEEECCCCC-------CCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999832545316675127788-------79886889899999999999
Q gi|254781120|r 300 LNLIKILKGIPAKINLIPFNPWP-------GCEYLCSDQKDIVTFSECIK 342 (384)
Q Consensus 300 ~~L~~ll~~~~~~vNLIp~N~~~-------~~~~~~~~~~~i~~F~~~L~ 342 (384)
...-.+++.+-+|||=|++.|.. ...|+|....+..+|+-+-.
T Consensus 12 p~Fh~fVRrvy~kvNgI~~~p~~~~~~~~~~~~y~PT~~qKf~AfRiifw 61 (68)
T pfam10906 12 PGFHRFVRRVYAKVNGIKYTPEQHEETSMSEFLYKPTRLQKFNAFRIIFW 61 (68)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 77889999999997088987767754444443015650544225566648
No 125
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=30.60 E-value=40 Score=14.59 Aligned_cols=205 Identities=13% Similarity=0.239 Sum_probs=109.1
Q ss_pred CHHCCCCCC--CCCCHHHCCCCHHHHHHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHH-HHHHHHH
Q ss_conf 100486132--24411102789899999999-9999722203444434344454586110144101454454-2899999
Q gi|254781120|r 124 CSLTCSFCY--TGTQKLVRNLTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC-NFDNVKK 199 (384)
Q Consensus 124 C~m~C~FCa--Tg~~G~~RNLt~~EIv~Qv~-~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl~-N~d~v~~ 199 (384)
|.-.|.||. +-..+-.......+.++.++ .+.+.+.. ....+++| .-||.|=|-|-+ +.+.+.+
T Consensus 20 C~~~C~YCdF~~~v~~~~~~~~~~~~~~~Y~~~L~~Ei~~-----------~~~~~~~i-~tiy~GGGTPSlL~~~~l~~ 87 (399)
T PRK07379 20 CRRRCFYCDFPISVVGDRQRGGTSGLIEEYVEVLCQEIAI-----------TPSLGQPL-QTVFFGGGTPSLLPVEQLER 87 (399)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-----------HHCCCCCE-EEEEECCCHHHHCCHHHHHH
T ss_conf 6692889999751766666654057999999999999973-----------14159962-18996995567489999999
Q ss_pred HHHCCCCCCCCCCCCC-EEEEEECCCCHHHHHHH--CCCCC-CEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9603768457787753-68885138741478860--12565-17998404551134441233125789999999999986
Q gi|254781120|r 200 SLSIASDSMGLSFSKR-RITLSTSGFVPNIARVG--EEIGV-MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275 (384)
Q Consensus 200 ai~~l~~~~g~~~~~r-~ITvST~Gi~p~I~~la--~~~~~-~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~y~~ 275 (384)
-++.+.. .|++++- -|||=.-=-.-..+++. .+.+| ++-+-+.+-+|+..+. ++|.++.++..++++.-.
T Consensus 88 ll~~l~~--~f~~~~~~EiTiE~nP~~~~~~~l~~l~~~GvNRiSiGvQSf~~~~L~~---lgR~h~~~~~~~ai~~~~- 161 (399)
T PRK07379 88 ILLTLDQ--RFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELLAL---CGRSHRVKDIYQAVADIH- 161 (399)
T ss_pred HHHHHHH--HCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCHHHHHH---HCCCCCHHHHHHHHHHHH-
T ss_conf 9999998--6899988579998458989999999998569885889702386889998---489999999999999999-
Q ss_pred HCCCCEEEEEEEEECCCC-CCHHHHHH-HHHHHCCCCCEEEEEECCCCCCCC---------CCCCCHHHH----HHHHHH
Q ss_conf 258945999998726999-88899999-999832545316675127788798---------868898999----999999
Q gi|254781120|r 276 LSNARRITFEYVMLKGIN-DSPRDALN-LIKILKGIPAKINLIPFNPWPGCE---------YLCSDQKDI----VTFSEC 340 (384)
Q Consensus 276 ~~~~rrit~EYvli~gvN-Ds~e~a~~-L~~ll~~~~~~vNLIp~N~~~~~~---------~~~~~~~~i----~~F~~~ 340 (384)
..+-..|.+ =||=|+- -+.++.+. |.+.+.--+-||-+.++.--|+.+ ...|+++.. +.-.+.
T Consensus 162 ~~gf~nini--DLIyGlPgQt~~~~~~~l~~~~~l~p~hiS~Y~L~~e~~T~~~~~~~~~~~~lp~~~~~~~~~~~~~~~ 239 (399)
T PRK07379 162 QAGIENFSL--DLISGLPHQTLEDWQASLEAAIAINPTHLSCYDLVLEPVTAFGKQYQPGKAPLPSDETTAAMYRLAQEI 239 (399)
T ss_pred HCCCCCEEE--EEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 769975545--533078998899999999999733888078888896389779998605888999989999999999999
Q ss_pred HHHCCCEE
Q ss_conf 99879878
Q gi|254781120|r 341 IKRSGYSS 348 (384)
Q Consensus 341 L~~~Gi~~ 348 (384)
|.++|+.-
T Consensus 240 L~~~Gy~~ 247 (399)
T PRK07379 240 LTQAGYEH 247 (399)
T ss_pred HHHCCCCE
T ss_conf 98689887
No 126
>pfam08806 Sep15_SelM Sep15/SelM redox domain. Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum.
Probab=30.40 E-value=34 Score=15.07 Aligned_cols=54 Identities=11% Similarity=0.122 Sum_probs=25.5
Q ss_pred EEEEECCC--CHHHHHHHC-CCC--CCE----------EEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 88851387--414788601-256--517----------998404551134441233125789999999999
Q gi|254781120|r 217 ITLSTSGF--VPNIARVGE-EIG--VML----------AISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 (384)
Q Consensus 217 ITvST~Gi--~p~I~~la~-~~~--~~L----------AiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~ 272 (384)
+++++|-+ -|.|+.|.+ +.+ .+| .+-|.-.+.+.-+. ++| .+|+-+++.+-+++
T Consensus 5 le~c~CkL~~~PevkaFi~~d~~~y~nl~vk~v~Ga~P~L~L~D~~g~~~E~-i~I-ekw~~d~i~~fL~e 73 (77)
T pfam08806 5 LECCGCKLNRLPEVKAFIREDIPLFPNLEIKYVPGADPELVLLDDNGQEVER-LSI-DKWKRDEINEFLLE 73 (77)
T ss_pred EEECCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCEEEEECCCCCEEEE-EEC-CCCCHHHHHHHHHH
T ss_conf 8853521023788899885251127981699856989889997589989889-721-42879999999997
No 127
>pfam08769 Spo0A_C Sporulation initiation factor Spo0A C terminal. The response regulator Spo0A is comprised of a phophoacceptor domain and a transcription activation domain. This domain corresponds to the transcription activation domain and forms an alpha helical structure comprising of 6 alpha helices. The structure contains a helix-turn-helix and binds DNA.
Probab=30.12 E-value=40 Score=14.53 Aligned_cols=60 Identities=13% Similarity=0.232 Sum_probs=47.1
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 999999986998545775589999999871799967833478899999862022578702346
Q gi|254781120|r 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE 78 (384)
Q Consensus 16 EL~~~l~~~G~p~~~~~fRa~QI~~wiy~k~v~~f~~MtnLpk~lR~~L~e~~~i~~l~iv~~ 78 (384)
+..+++.++|.|++.+-|+. +-+.| .--+.+.+-...+.|.+.-.+.+.|...+..|.+.
T Consensus 1 ~i~~ll~~lGip~h~kGy~Y--l~~AI-~l~~~d~~~l~~itK~LYp~IA~ky~TT~s~VERa 60 (106)
T pfam08769 1 EVTDLLHEIGVPAHIKGYQY--LRDAI-EMVVEDPDYLGGVTKELYPTIAKKYNTTPSRVERA 60 (106)
T ss_pred CHHHHHHHHCCCCCCCHHHH--HHHHH-HHHHHCHHHHCCCCHHHHHHHHHHHCCCHHHHHHH
T ss_conf 98899999398954511899--99999-99985777643402898999999959988899999
No 128
>KOG3107 consensus
Probab=29.71 E-value=41 Score=14.48 Aligned_cols=70 Identities=20% Similarity=0.281 Sum_probs=46.6
Q ss_pred EEEEEECCCCHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHH-HHHHHHHHHCCCCEEEEEEEEECCCCC
Q ss_conf 6888513874147886012565179984045511344412331257899999-999999862589459999987269998
Q gi|254781120|r 216 RITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI-DACRHYPGLSNARRITFEYVMLKGIND 294 (384)
Q Consensus 216 ~ITvST~Gi~p~I~~la~~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~-~a~~~y~~~~~~rrit~EYvli~gvND 294 (384)
+|-|+|-+++|++-++.- +.| ..+.||..-|+...+- +.|-+.+...-||+ +-||.|.+=+|
T Consensus 373 nVlvTttqLipalaKvLL---~gL------------g~~fpiENIYSa~kiGKescFerI~~RFg~K--~~yvvIgdG~e 435 (468)
T KOG3107 373 NVLVTTTQLIPALAKVLL---YGL------------GSSFPIENIYSATKIGKESCFERIQSRFGRK--VVYVVIGDGVE 435 (468)
T ss_pred EEEEECCCHHHHHHHHHH---HHC------------CCCCCCHHHHHHHHCCHHHHHHHHHHHHCCC--EEEEEECCCHH
T ss_conf 899854603689999998---705------------7740000101154401889999999986784--59999668678
Q ss_pred CHHHHHHH
Q ss_conf 88999999
Q gi|254781120|r 295 SPRDALNL 302 (384)
Q Consensus 295 s~e~a~~L 302 (384)
...-|++|
T Consensus 436 ee~aAK~l 443 (468)
T KOG3107 436 EEQAAKAL 443 (468)
T ss_pred HHHHHHHH
T ss_conf 77888861
No 129
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=29.48 E-value=32 Score=15.26 Aligned_cols=139 Identities=13% Similarity=0.152 Sum_probs=72.0
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 28999999603768457787753688851387414788601256517998404551134441233125789999999999
Q gi|254781120|r 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 (384)
Q Consensus 193 N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~I~~la~~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~ 272 (384)
|-..|+.-+--+-+..||||- .+||+.+-. |++ -++.+-.++..+. =++|+- .|..|++.++-
T Consensus 11 N~pGvL~RV~glFsrRgyNIe--SL~V~~te~-~~i--------SR~Tiv~~gd~~~-ieQI~k-----QL~KLidVi~V 73 (172)
T CHL00100 11 DEAGVLTRIAGLFARRGFNIE--SLAVGPAEQ-IGI--------SRITMVVPGDNRT-IEQLTK-----QLYKLVNILKV 73 (172)
T ss_pred CCCCHHHHHHHHHHCCCCCEE--EEEEECCCC-CCE--------EEEEEEEECCHHH-HHHHHH-----HHHCCCCEEEE
T ss_conf 786799999999851786723--699721489-981--------5999999689999-999999-----99558270264
Q ss_pred HHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECC
Q ss_conf 98625894599999872699988899999999832545316675127788798868898999999999998798785415
Q gi|254781120|r 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 (384)
Q Consensus 273 y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N~~~~~~~~~~~~~~i~~F~~~L~~~Gi~~tiR~ 352 (384)
.. .+....|.=|.+|+|=- -..++-.++.++++-+.++| +..++-.-.---.-+.+++++|.+.|+..|+.=.+|.
T Consensus 74 ~d-lt~~~~v~REl~LiKV~-~~~~~r~ei~~i~~~f~akI--vdv~~~s~iiE~tG~~~kida~i~~L~~~gI~E~~RT 149 (172)
T CHL00100 74 QD-ITNIPSVERELMLIKIN-SNSQNRSEILDIVQIFRAKV--VDLSEELLILEVTGDPGKIVAIEQLLTKFGIIEIART 149 (172)
T ss_pred EE-CCCCCHHHHEEEEEEEE-CCCCCHHHHHHHHHHCCCEE--EEECCCEEEEEEECCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 30-67844564351899996-58314899999999729799--9906998999993898999999997504096899915
No 130
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase; InterPro: IPR005888 The conversion of dTDP-glucose into dTDP-4-keto-6-deoxyglucose by Escherichia coli dTDP-glucose 4,6-dehydratase) takes place in the active site in three steps: dehydrogenation to dTDP-4-ketoglucose, dehydration to dTDP-4-ketoglucose-5,6-ene, and rereduction of C6 to the methyl group. The 4,6-dehydratase makes use of tightly bound NAD^+ as the coenzyme for transiently oxidizing the substrate, activating it for the dehydration step . This and other 4,6-dehydratases catalyze the first committed step in all 6-deoxysugar biosynthetic pathways described to date. Numerous 6-deoxysugars are used in bacterial lipopolysaccharide production as well as in the biosynthesis of a diverse array of secondary metabolites.; GO: 0008460 dTDP-glucose 46-dehydratase activity, 0009225 nucleotide-sugar metabolic process.
Probab=29.36 E-value=38 Score=14.70 Aligned_cols=114 Identities=20% Similarity=0.226 Sum_probs=65.3
Q ss_pred CCHHHHHHHCCCC----CCEE------EEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHH-HHHCCCCEEEEE-EEEECC
Q ss_conf 7414788601256----5179------984045511344412331257899999999999-862589459999-987269
Q gi|254781120|r 224 FVPNIARVGEEIG----VMLA------ISLHAVSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFE-YVMLKG 291 (384)
Q Consensus 224 i~p~I~~la~~~~----~~LA------iSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~y-~~~~~~rrit~E-Yvli~g 291 (384)
-...+.++.++.+ +|+| =|+-+|-.=++.-+|= --.|+||.++| ..+....+-.|. .+=|-=
T Consensus 61 D~~lv~~~~~e~~~D~VvhFAAESHVDRSI~~P~~F~~TNv~G------T~tLLEA~R~~w~aL~e~~~a~~r~l~HiST 134 (340)
T TIGR01181 61 DRELVDRLLKEHDPDAVVHFAAESHVDRSISGPEAFIETNVVG------TYTLLEAVRKYWHALREAKKAGVRKLHHIST 134 (340)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCHHHHHCCHHH------HHHHHHHHHHHCCCCCCCCCCCCEEEEEEEC
T ss_conf 2889988840017677886222052333014541144403378------8999999974044566445131026357603
Q ss_pred CCCCHHHHHHHHHHHCCCCC-EEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECC
Q ss_conf 99888999999998325453-16675127788798868898999999999998798785415
Q gi|254781120|r 292 INDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 (384)
Q Consensus 292 vNDs~e~a~~L~~ll~~~~~-~vNLIp~N~~~~~~~~~~~~~~i~~F~~~L~~~Gi~~tiR~ 352 (384)
| +.+ ..|-++=+. -.===||+| .|||.+|....=.--+.+.+-.|++++|=+
T Consensus 135 --D---EVY--Gdl~~~~~~~ftE~tpl~P--sSPYSASKAasD~LVrAy~rTYGLp~~ITr 187 (340)
T TIGR01181 135 --D---EVY--GDLEKGDPASFTETTPLAP--SSPYSASKAASDLLVRAYHRTYGLPVLITR 187 (340)
T ss_pred --C---EEE--CCCCCCCCEEEEECCCCCC--CCCHHHHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf --0---144--0467896734423278877--872458898887898888875488605768
No 131
>TIGR02157 PA_CoA_Oxy2 phenylacetate-CoA oxygenase, PaaH subunit; InterPro: IPR009359 Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation , . Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA ..
Probab=28.87 E-value=29 Score=15.62 Aligned_cols=46 Identities=22% Similarity=0.128 Sum_probs=25.3
Q ss_pred CCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCC
Q ss_conf 25651799840455113444123312578999999999998625894599999872699988
Q gi|254781120|r 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 (384)
Q Consensus 234 ~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs 295 (384)
.++..+..|||||+++. .|..|-+.|.+...+ +.|=-|--..|.-+
T Consensus 13 gl~~~~~gSl~A~d~~~--------------AL~~A~d~y~RR~~~--~~IWVV~~~~I~a~ 58 (90)
T TIGR02157 13 GLDHKHVGSLHAPDEEM--------------ALEVARDVYTRREEG--VSIWVVKASHIVAS 58 (90)
T ss_pred CCCEEEEEEEECCCHHH--------------HHHHHHHHCCCCCCC--CEEEEEECCCCCCC
T ss_conf 86524665544611688--------------999877520355788--62788614540005
No 132
>KOG0498 consensus
Probab=28.52 E-value=37 Score=14.84 Aligned_cols=61 Identities=16% Similarity=0.415 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHCCCCCC-CCCCHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHCCCCCCC
Q ss_conf 98999999998699854-57755899999998717999678334788999998620225787
Q gi|254781120|r 13 MREELEEALLKIGIPQR-HVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYP 73 (384)
Q Consensus 13 s~~EL~~~l~~~G~p~~-~~~fRa~QI~~wiy~k~v~~f~~MtnLpk~lR~~L~e~~~i~~l 73 (384)
...+.++|+.-.-+|+. .++.|.---++|.+.+|+..=+-..+||+++|..+..+.....+
T Consensus 360 k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv 421 (727)
T KOG0498 360 KMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLV 421 (727)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 99999999986619888999999999988751168688999874779999999999729998
No 133
>cd00622 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase. This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Also members of this su
Probab=28.24 E-value=43 Score=14.31 Aligned_cols=171 Identities=12% Similarity=0.134 Sum_probs=78.5
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHC---CCCCCEEEEEECCCCHHHHHH
Q ss_conf 11014410145445428999999603768457787753688851387414788601---256517998404551134441
Q gi|254781120|r 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE---EIGVMLAISLHAVSNDLRNIL 254 (384)
Q Consensus 178 ~i~NiVfMGmGEPl~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~I~~la~---~~~~~LAiSLha~~~~~R~~l 254 (384)
+-.+|||.|-+-.- +.+..|++. +-+.|+|-+ ...++++++ +..+.|-|+...++..
T Consensus 68 ~~~~Iif~gp~K~~---~el~~a~~~---------gv~~i~vDS---~~EL~~i~~~~~~~~i~lRv~~~~~~~~----- 127 (362)
T cd00622 68 SPERIIFANPCKSI---SDIRYAAEL---------GVRLFTFDS---EDELEKIAKHAPGAKLLLRIATDDSGAL----- 127 (362)
T ss_pred CHHHEEECCCCCCH---HHHHHHHHC---------CCCEEEECC---HHHHHHHHHHCCCCCEEEEECCCCCCCC-----
T ss_conf 87895845887887---999999974---------996677278---9999999986777826999866999873-----
Q ss_pred CCCCCCC--CHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHH------HHHHHHHHHCCCCCEEEEEECCCCCCCCC
Q ss_conf 2331257--899999999999862589459999987269998889------99999998325453166751277887988
Q gi|254781120|r 255 VPINRKY--PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR------DALNLIKILKGIPAKINLIPFNPWPGCEY 326 (384)
Q Consensus 255 mPi~~~~--~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e------~a~~L~~ll~~~~~~vNLIp~N~~~~~~~ 326 (384)
.|...|+ +++++.++++.... .+-+.+-+.+=+=-+..|... .+..+.+.++....++..|-+--.=+.+|
T Consensus 128 ~~~~~KFGi~~~~~~~~l~~~~~-~~l~~~GlH~H~GS~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~idiGGG~~~~y 206 (362)
T cd00622 128 CPLSRKFGADPEEARELLRRAKE-LGLNVVGVSFHVGSQCTDPSAYVDAIADAREVFDEAAELGFKLKLLDIGGGFPGSY 206 (362)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH-CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCC
T ss_conf 35777579999999999999986-29956889987687768979999999999999999997599976798379836788
Q ss_pred C--CCCH-HHHHHHHHHHHHC--CCEEEECCCCCCCCCCCCCCCHHHH
Q ss_conf 6--8898-9999999999987--9878541587771001120021025
Q gi|254781120|r 327 L--CSDQ-KDIVTFSECIKRS--GYSSPIRTPRGLDILAACGQLKSLS 369 (384)
Q Consensus 327 ~--~~~~-~~i~~F~~~L~~~--Gi~~tiR~srG~DI~aACGQL~~~~ 369 (384)
. .++- +..+.+.+.+.+. .-.+++--.-|+-+-|-||.|-++.
T Consensus 207 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~EPGR~lva~ag~llt~V 254 (362)
T cd00622 207 DGVVPSFEEIAAVINRALDEYFPDEGVRIIAEPGRYLVASAFTLAVNV 254 (362)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHCCCEEEEEEEE
T ss_conf 889999899999999999986486797799856045201407999999
No 134
>PRK09198 putative nicotinate phosphoribosyltransferase; Provisional
Probab=27.86 E-value=22 Score=16.55 Aligned_cols=19 Identities=21% Similarity=0.417 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHCCCEEE
Q ss_conf 8999999999998798785
Q gi|254781120|r 331 QKDIVTFSECIKRSGYSSP 349 (384)
Q Consensus 331 ~~~i~~F~~~L~~~Gi~~t 349 (384)
.+++++..+.|..+|+.+.
T Consensus 339 ~~~i~~Il~~l~~~G~sa~ 357 (462)
T PRK09198 339 LERIEAILEALKAKGFAAD 357 (462)
T ss_pred HHHHHHHHHHHHHCCCCCC
T ss_conf 9999999999997598642
No 135
>pfam01274 Malate_synthase Malate synthase.
Probab=27.54 E-value=40 Score=14.55 Aligned_cols=24 Identities=8% Similarity=0.127 Sum_probs=12.7
Q ss_pred CCCCCCCCCCCCEEEEEECCCCHH
Q ss_conf 768457787753688851387414
Q gi|254781120|r 204 ASDSMGLSFSKRRITLSTSGFVPN 227 (384)
Q Consensus 204 l~~~~g~~~~~r~ITvST~Gi~p~ 227 (384)
+.-|.|+.+--+||+|--.-++.+
T Consensus 159 ~vRpRG~hl~E~hv~vdG~~i~~~ 182 (524)
T pfam01274 159 FVRPRGWHLPEKHILVDGEPISGG 182 (524)
T ss_pred EEECCCCCCCCCCEEECCCCCCCH
T ss_conf 874776578976360788436516
No 136
>TIGR01485 SPP_plant-cyano sucrose phosphatase; InterPro: IPR012847 This entry describes the sucrose phosphate phosphohydrolase from plants and cyanobacteria (SPP). However, a closely related group of sequences from bacteria and archaea may prove to catalyze the same reaction. SPP is a member of the Class IIB subfamily of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain, which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain..
Probab=27.34 E-value=45 Score=14.20 Aligned_cols=30 Identities=23% Similarity=0.290 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHHHHCCCEEEECCCCCCCCC
Q ss_conf 989999999999987987854158777100
Q gi|254781120|r 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 (384)
Q Consensus 330 ~~~~i~~F~~~L~~~Gi~~tiR~srG~DI~ 359 (384)
+.+-|....+.|.+.|+.|.|=+|-|.|.+
T Consensus 134 ~~~V~~~L~~~L~~~g~~vk~iYSsG~dlD 163 (257)
T TIGR01485 134 AAEVIKQLEEELKKSGLDVKLIYSSGKDLD 163 (257)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCEEEE
T ss_conf 468999899888742897589975882377
No 137
>KOG2420 consensus
Probab=27.29 E-value=40 Score=14.55 Aligned_cols=75 Identities=17% Similarity=0.221 Sum_probs=45.4
Q ss_pred HHHHHHHHHCCC-----CCHHHHCCCCHHHHHHHHHCCCCCCCCEEEEEEC-CCCCCCEEEECCCCCCCCCEEEEEEECC
Q ss_conf 999999987179-----9967833478899999862022578702346531-4544303775247777898155443023
Q gi|254781120|r 36 SQIWKWIYVRGI-----RDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIP 109 (384)
Q Consensus 36 ~QI~~wiy~k~v-----~~f~~MtnLpk~lR~~L~e~~~i~~l~iv~~~~S-~DGT~K~L~~l~d~~~~dg~~IEsVlip 109 (384)
--+|.|+|.-.. .|++..+||+.-+.-+|++....-.+ ..-++| +||++=-- |.+ +|..||-|=
T Consensus 111 y~lys~~Fg~NL~Ea~~pDl~hY~nlaeFF~RkLKpg~RpIdp--~~piVSPaDGkIL~f-----G~v-~~~~IEqVK-- 180 (382)
T KOG2420 111 YGLYARTFGCNLDEAADPDLTHYRNLAEFFTRKLKPGTRPIDP--ASPLVSPADGKILHF-----GVV-EDNEIEQVK-- 180 (382)
T ss_pred HHHHHHHHCCCCHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCC--CCCEECCCCCCEEEE-----EEE-CCCEEEEEC--
T ss_conf 4453675466711125830542022999975415888734687--776233788747887-----775-586256743--
Q ss_pred CCCCCEEEEEECCC
Q ss_conf 46773389884065
Q gi|254781120|r 110 EKSRGTLCVSSQVG 123 (384)
Q Consensus 110 ~~~r~T~CvSSQvG 123 (384)
+.|--|-.-.|
T Consensus 181 ---G~tYSleafLG 191 (382)
T KOG2420 181 ---GHTYSLEAFLG 191 (382)
T ss_pred ---CEEEEHHHHCC
T ss_conf ---70423899709
No 138
>KOG3127 consensus
Probab=26.62 E-value=20 Score=16.79 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=15.4
Q ss_pred EEEEEECCC-CHH--CCCCCCCCCCHHHCC
Q ss_conf 389884065-100--486132244111027
Q gi|254781120|r 115 TLCVSSQVG-CSL--TCSFCYTGTQKLVRN 141 (384)
Q Consensus 115 T~CvSSQvG-C~m--~C~FCaTg~~G~~RN 141 (384)
|=|--+||| |-+ +|.|-++|-+||-|+
T Consensus 81 SkDpntqVGaCiv~~~n~iVg~GYNgfP~g 110 (230)
T KOG3127 81 SKDPNTQVGACIVDRENRIVGTGYNGFPRG 110 (230)
T ss_pred CCCCCCCEEEEEECCCCEEEEECCCCCCCC
T ss_conf 359656602699737987999603787677
No 139
>pfam07587 PSD1 Protein of unknown function (DUF1553). A family of proteins found in Rhodopirellula baltica.
Probab=26.39 E-value=47 Score=14.08 Aligned_cols=114 Identities=23% Similarity=0.237 Sum_probs=61.4
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCC-CHHHH---CCCC--HHHHHHHHHCCCCCCCCEEEEEECCCCCCC
Q ss_conf 89999999986998545775589999999871799-96783---3478--899999862022578702346531454430
Q gi|254781120|r 14 REELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIR-DFQGM---SDIS--QEVRHLLNQHFSIIYPEIVDEKISCDGTRK 87 (384)
Q Consensus 14 ~~EL~~~l~~~G~p~~~~~fRa~QI~~wiy~k~v~-~f~~M---tnLp--k~lR~~L~e~~~i~~l~iv~~~~S~DGT~K 87 (384)
..+|.+|+.+-.-|- ..+--++-||.|++.+|+. ..|+| .|-| -+|-+.|...|.-. +-..|
T Consensus 3 R~~lA~wlt~~~Np~-far~~vNR~W~~~fG~GlV~pvdd~g~~~~~PshPeLLd~La~~f~~~-----------g~dlK 70 (258)
T pfam07587 3 RLELANWLTDPENPL-TARVIVNRVWQHLFGRGLVDTVDDFGLQGNPPSHPELLDWLAKEFVES-----------GWDLK 70 (258)
T ss_pred HHHHHHHHCCCCCCC-HHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHC-----------CCCHH
T ss_conf 899999965998750-489999999999729977388566146899999999999999999887-----------98799
Q ss_pred EEEECCCCCCCCCEEEEEEECCCCCCCEEEEEECCCC------HHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 3775247777898155443023467733898840651------004861322441110278989999999999997222
Q gi|254781120|r 88 WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC------SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160 (384)
Q Consensus 88 ~L~~l~d~~~~dg~~IEsVlip~~~r~T~CvSSQvGC------~m~C~FCaTg~~G~~RNLt~~EIv~Qv~~~~~~l~~ 160 (384)
.|.|+= +-|= |--.||+.-= +-+=-| .. -..|-|+|++|.+-++.+-..+..
T Consensus 71 ~L~R~I---------~~S~--------tYq~ss~~~~~~~~~dp~n~~f---~~-~~~rRL~AEql~Dsll~~sg~l~~ 128 (258)
T pfam07587 71 HLHRLI---------VLSR--------TYQQSSVANAENLEIDPDNRLL---AR-FPRRRLSAEVIRDSMLAVSGLLDP 128 (258)
T ss_pred HHHHHH---------HHHH--------HHHHCCCCCHHHHCCCCCHHHH---CC-CCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 999999---------9633--------1442056885653249520555---25-887277699999999998399852
No 140
>cd00480 malate_synt Malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=26.39 E-value=42 Score=14.39 Aligned_cols=18 Identities=11% Similarity=0.309 Sum_probs=11.9
Q ss_pred CCCCCCCCCCCCCEEEEE
Q ss_conf 376845778775368885
Q gi|254781120|r 203 IASDSMGLSFSKRRITLS 220 (384)
Q Consensus 203 ~l~~~~g~~~~~r~ITvS 220 (384)
++.-|.|+.+-.+||+|.
T Consensus 140 l~vRpRG~hl~E~hv~vd 157 (511)
T cd00480 140 LFVRPRGWHLTEKHILVD 157 (511)
T ss_pred EEEECCCCCCCCCCEEEC
T ss_conf 887187646798737687
No 141
>PRK09358 adenosine deaminase; Provisional
Probab=26.31 E-value=47 Score=14.07 Aligned_cols=166 Identities=16% Similarity=0.157 Sum_probs=75.5
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCC-HHHHHHHHHHHHHCCCC-CCCCCCCCCE
Q ss_conf 027898999999999999722203444434344454586110144101454-45428999999603768-4577877536
Q gi|254781120|r 139 VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE-PLCNFDNVKKSLSIASD-SMGLSFSKRR 216 (384)
Q Consensus 139 ~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGE-Pl~N~d~v~~ai~~l~~-~~g~~~~~r~ 216 (384)
.++|+..|+++-++-..+.... ..+-.+.=|+-+--.. |-...+.+.-|+....+ --|++++-.-
T Consensus 105 ~~gl~~~~~~~~i~~~~~~a~~-------------~~~i~~~lI~~~~R~~~~e~a~~~~~~a~~~~~~~vvGidl~G~E 171 (333)
T PRK09358 105 ERGLPLEEVVEAVLDGLRDAEA-------------DFGISARLILCFLRHFGEEAALETLELALRFRDRGVVGFDLAGDE 171 (333)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH-------------HCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 0588667789999999998786-------------469669999985567999999999999985347877984356876
Q ss_pred EEEEECCCCHH----HHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCC
Q ss_conf 88851387414----78860125651799840455113444123312578999999999998625894599999872699
Q gi|254781120|r 217 ITLSTSGFVPN----IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 (384)
Q Consensus 217 ITvST~Gi~p~----I~~la~~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gv 292 (384)
.|-++. .-+.|.+ ..|-+.+||.-. .+-+.+.+|+..+ . -.||-=-+-++++
T Consensus 172 -----~~~~~~~f~~~f~~ar~--~gl~~t~HaGE~------------~~~~~i~~ai~~l---~-a~RIGHGv~~~~d- 227 (333)
T PRK09358 172 -----LGFPPSKFARAFDIARD--AGLRLTAHAGEA------------GGPESIWEALDEL---G-ADRIGHGVRAIED- 227 (333)
T ss_pred -----CCCCHHHHHHHHHHHHH--CCCCEEEECCCC------------CCHHHHHHHHHHC---C-CCEECCCEECCCC-
T ss_conf -----78986879999999998--599233306888------------9849999999842---8-7642350311679-
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECC
Q ss_conf 988899999999832545316675127788798868898999999999998798785415
Q gi|254781120|r 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 (384)
Q Consensus 293 NDs~e~a~~L~~ll~~~~~~vNLIp~N~~~~~~~~~~~~~~i~~F~~~L~~~Gi~~tiR~ 352 (384)
.+|.++++..+..+.+=| +.+.--...+.-.-.-| ..+.+.|++++|-+
T Consensus 228 -------~~l~~~l~~~~I~lEiCp---tSN~~~~~v~~~~~HPi-~~~~~~gv~v~inT 276 (333)
T PRK09358 228 -------PALMDRLADRRIPLEVCP---TSNVQLGVVPSLAEHPL-KKLLDAGVRVTINT 276 (333)
T ss_pred -------HHHHHHHHHCCCEEEECC---CCHHHHCCCCCCCCCHH-HHHHHCCCEEEECC
T ss_conf -------999999986696699766---43032015787555769-99998899499808
No 142
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase; InterPro: IPR010233 This entry represents an O-methyltransferase, which is believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and mitochondria (COQ3) , . A separate methylase (MenG/UbiE) catalyses the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.; GO: 0008425 2-polyprenyl-6-methoxy-14-benzoquinone methyltransferase activity, 0006744 ubiquinone biosynthetic process.
Probab=26.08 E-value=47 Score=14.04 Aligned_cols=62 Identities=10% Similarity=0.114 Sum_probs=33.8
Q ss_pred EEEEEEEECCCCCCHHHHHHHHHHHCCCC----C------------------EEEEEECCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99999872699988899999999832545----3------------------1667512778879886889899999999
Q gi|254781120|r 282 ITFEYVMLKGINDSPRDALNLIKILKGIP----A------------------KINLIPFNPWPGCEYLCSDQKDIVTFSE 339 (384)
Q Consensus 282 it~EYvli~gvNDs~e~a~~L~~ll~~~~----~------------------~vNLIp~N~~~~~~~~~~~~~~i~~F~~ 339 (384)
|-.--=|++.|-|=..=.+.+++++|+=+ . -.+++|=.-|.=..|=.| .+..+
T Consensus 162 ~V~~mEvlEHV~dp~~f~~~c~~llkPgG~lF~STINRt~kS~~~aIvgAEYiLr~vPKGTH~~~KFi~P-----~EL~~ 236 (275)
T TIGR01983 162 VVTCMEVLEHVPDPQAFIKACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRWVPKGTHDWEKFIKP-----SELTS 236 (275)
T ss_pred EEEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH-----HHHHH
T ss_conf 3764320000278889999999850899848973000218999999999999851689872471015387-----99999
Q ss_pred HHH----HCCCEE
Q ss_conf 999----879878
Q gi|254781120|r 340 CIK----RSGYSS 348 (384)
Q Consensus 340 ~L~----~~Gi~~ 348 (384)
+|+ ++|+.+
T Consensus 237 ~l~d~N~~~~l~~ 249 (275)
T TIGR01983 237 WLEDDNRSAGLRV 249 (275)
T ss_pred HHHHCCCCCCEEE
T ss_conf 9851264676489
No 143
>PRK12928 lipoyl synthase; Provisional
Probab=25.78 E-value=25 Score=16.07 Aligned_cols=189 Identities=14% Similarity=0.184 Sum_probs=94.3
Q ss_pred CHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCC------HHHHHHHH
Q ss_conf 100486132244111027898999999999999722203444434344454586110144101454------45428999
Q gi|254781120|r 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE------PLCNFDNV 197 (384)
Q Consensus 124 C~m~C~FCaTg~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGE------Pl~N~d~v 197 (384)
|.-+|.||+..+ |----|-..|=..=--.+++ + .+..+|.-.--- --.-|.++
T Consensus 70 CTR~C~FC~V~t-g~P~~lD~~EP~rvA~av~~-m-------------------~LkyvVITSV~RDDL~DgGA~hfa~~ 128 (290)
T PRK12928 70 CTRRCAFCQVAK-GRPMPLDPDEPERVAEAVAA-L-------------------GLRYVVLTSVARDDLPDGGAAHFVAT 128 (290)
T ss_pred CCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHH-H-------------------CCCEEEEEEECCCCCCCCCHHHHHHH
T ss_conf 354898515537-99898980347999999998-3-------------------89768984123678866452999999
Q ss_pred HHHHHCCCCCCCCCCCCCEEEEEEC---CCCH-HHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCC-CCCHHHHHHHHHH
Q ss_conf 9996037684577877536888513---8741-478860125651799840455113444123312-5789999999999
Q gi|254781120|r 198 KKSLSIASDSMGLSFSKRRITLSTS---GFVP-NIARVGEEIGVMLAISLHAVSNDLRNILVPINR-KYPLEMLIDACRH 272 (384)
Q Consensus 198 ~~ai~~l~~~~g~~~~~r~ITvST~---Gi~p-~I~~la~~~~~~LAiSLha~~~~~R~~lmPi~~-~~~l~~l~~a~~~ 272 (384)
+++|+-.+-. . .|-|=|. |=.. .|+.+.+..|-- -+-|=|+=.+|-|.-+ +-..+.=++.|++
T Consensus 129 I~~Ir~~~P~----~---~iEvLiPDF~G~~~~al~~v~~a~pdV-----~nHNiETV~rL~~~VRp~A~Y~rSL~vL~~ 196 (290)
T PRK12928 129 IAAIRARNPG----T---GIEVLTPDFWGGVARALATVLAAKPDC-----FNHNLETVPRLQKAVRRGADYQRSLDLLAR 196 (290)
T ss_pred HHHHHHHCCC----C---EEEEECHHHCCCHHHHHHHHHHCCCHH-----HHCCCCCCHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 9999845998----6---799707111368789999998468546-----545501204317124885508999999999
Q ss_pred HHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEE-ECC-CC----CCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 98625894599999872699988899999999832545316675-127-78----8798868898999999999998798
Q gi|254781120|r 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLI-PFN-PW----PGCEYLCSDQKDIVTFSECIKRSGY 346 (384)
Q Consensus 273 y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLI-p~N-~~----~~~~~~~~~~~~i~~F~~~L~~~Gi 346 (384)
.-+.. ..-+|=- -++=|+-.+.++..+..+=|+...|.+=-| .|= |. |-..|-. .+.-+.|.++-.+.|+
T Consensus 197 ak~~~-~~i~TKS-giMvGLGEt~eEv~~~~~DLr~~gvdilTiGQYL~Ps~~h~pV~ryv~--P~eF~~~~~~a~~~GF 272 (290)
T PRK12928 197 AKELA-PGIPTKS-GLMLGLGETEDEVIETLRDLRAVDCDRLTIGQYLRPSLAHLPVQRYWT--PEEFEALGQIARELGF 272 (290)
T ss_pred HHHHC-CCCEEEE-EEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEECCC--HHHHHHHHHHHHHCCC
T ss_conf 99738-8852413-458860588999999999999819989982402588866688333569--8999999999997699
Q ss_pred EEE
Q ss_conf 785
Q gi|254781120|r 347 SSP 349 (384)
Q Consensus 347 ~~t 349 (384)
...
T Consensus 273 ~~V 275 (290)
T PRK12928 273 KHV 275 (290)
T ss_pred CEE
T ss_conf 679
No 144
>TIGR02182 GRXB Glutaredoxin, GrxB family; InterPro: IPR011901 Glutaredoxins , , , also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system . Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond . It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family includes the highly abundant Escherichia coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase , and may have more to do with resistance to redox stress .; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity.
Probab=25.47 E-value=22 Score=16.55 Aligned_cols=108 Identities=17% Similarity=0.140 Sum_probs=66.0
Q ss_pred CCHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHH--HHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHH
Q ss_conf 74147886012565179984045511344412331257899999--9999998625894599999872699988899999
Q gi|254781120|r 224 FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI--DACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 (384)
Q Consensus 224 i~p~I~~la~~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~--~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~ 301 (384)
.-|.|+...++. .+. .-.-+||.=-+.+|+|-- +|.++|..+. ..=+- -+=.-.|+|+.-+.+
T Consensus 83 ~s~~I~~WL~~v--------~~y---~~kL~~PR~~k~~l~EFAT~~A~~YF~~KK--E~~~G--~F~~~L~~t~~~~~~ 147 (212)
T TIGR02182 83 VSPEIEAWLRKV--------TGY---LNKLLLPRFAKLDLPEFATQSARKYFTDKK--EASAG--NFSALLNDTPNLLEE 147 (212)
T ss_pred CCHHHHHHHHHH--------CCH---HHHHCCCCHHCCCCCCCCCHHHHHHHHHHH--HHHHH--HHHHHHHCCHHHHHH
T ss_conf 877899999873--------112---322115511016886567688999998422--63053--599986134889999
Q ss_pred HHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECC
Q ss_conf 999832545316675127788798868898999999999998798785415
Q gi|254781120|r 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 (384)
Q Consensus 302 L~~ll~~~~~~vNLIp~N~~~~~~~~~~~~~~i~~F~~~L~~~Gi~~tiR~ 352 (384)
+-.++..+..-|+.=-+ |.+ ..-+.+.+.-|- .||+.-+..-|++
T Consensus 148 ~~~dLe~L~~L~~~~~~----Gvn-g~ls~dDi~vFp-~LRnLt~V~gi~w 192 (212)
T TIGR02182 148 INADLEELKSLIDGDSA----GVN-GELSVDDILVFP-LLRNLTVVKGIQW 192 (212)
T ss_pred HHHHHHHHHHHHCCCCC----CCC-CCHHHHHHHHHH-HHHHHHHHHCCCC
T ss_conf 99999999987322453----101-111045888875-7763345513757
No 145
>PRK07778 consensus
Probab=25.46 E-value=48 Score=13.96 Aligned_cols=10 Identities=20% Similarity=0.571 Sum_probs=4.2
Q ss_pred HHHHHHHHCC
Q ss_conf 9999986202
Q gi|254781120|r 59 EVRHLLNQHF 68 (384)
Q Consensus 59 ~lR~~L~e~~ 68 (384)
+||+.+.+.|
T Consensus 71 ~LR~aia~~~ 80 (386)
T PRK07778 71 ELREAIAADY 80 (386)
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 146
>PRK09265 aminotransferase AlaT; Validated
Probab=25.27 E-value=49 Score=13.94 Aligned_cols=19 Identities=11% Similarity=-0.062 Sum_probs=9.0
Q ss_pred HHH-HHHHHCCCEEEECCCC
Q ss_conf 999-9999879878541587
Q gi|254781120|r 336 TFS-ECIKRSGYSSPIRTPR 354 (384)
Q Consensus 336 ~F~-~~L~~~Gi~~tiR~sr 354 (384)
+|. +.|.+.|+.++==...
T Consensus 350 ~f~~~Ll~e~gV~v~PG~~F 369 (404)
T PRK09265 350 KFVLDLLLQEKVLLVQGTGF 369 (404)
T ss_pred HHHHHHHHHCCEEEECCCCC
T ss_conf 99999998699999778502
No 147
>pfam08654 DASH_Dad2 DASH complex subunit Dad2. The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis. In Saccharomyces cerevisiae DASH forms both rings and spiral structures on microtubules in vitro.
Probab=24.89 E-value=38 Score=14.77 Aligned_cols=18 Identities=44% Similarity=0.540 Sum_probs=14.5
Q ss_pred CHHHHHHHHHHHHHCCCC
Q ss_conf 445428999999603768
Q gi|254781120|r 189 EPLCNFDNVKKSLSIASD 206 (384)
Q Consensus 189 EPl~N~d~v~~ai~~l~~ 206 (384)
--|.||+||+++|..-+-
T Consensus 49 ~Vl~NW~~V~raIs~AS~ 66 (98)
T pfam08654 49 CVLANWDNVLRAISLASL 66 (98)
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999817999999999987
No 148
>TIGR00050 rRNA_methyl_1 RNA methyltransferase, TrmH family, group 1; InterPro: IPR004384 These proteins are part of the trmH (spoU) family of rRNA methylases. The spoU gene of Escherichia coli codes for a protein that shows strong similarities to previously characterised 2'-O-methyltransferases . TrmH is a tRNA (guanosine-2'-O-)-methyltransferase (2.1.1.34 from EC), which specifically methylates guanosine-18 in various tRNAs using S-adenosyl-L-methionine.; GO: 0008173 RNA methyltransferase activity.
Probab=24.44 E-value=50 Score=13.83 Aligned_cols=56 Identities=20% Similarity=0.251 Sum_probs=35.5
Q ss_pred EEEEEECCCCHH-HHHHHCC-------CCCCEEEEE--ECC-----------CCHHHHH----HCCCCCCCCHHHHHHHH
Q ss_conf 688851387414-7886012-------565179984--045-----------5113444----12331257899999999
Q gi|254781120|r 216 RITLSTSGFVPN-IARVGEE-------IGVMLAISL--HAV-----------SNDLRNI----LVPINRKYPLEMLIDAC 270 (384)
Q Consensus 216 ~ITvST~Gi~p~-I~~la~~-------~~~~LAiSL--ha~-----------~~~~R~~----lmPi~~~~~l~~l~~a~ 270 (384)
..+|-|||+..| -+.+... .+.-+|.|. |++ |.|+-.- =+|.+..||+=.|-.|.
T Consensus 77 ~~~vgTsGaRGGd~r~l~~~~~~P~el~~~~~~~~g~~~~A~vFGREd~GL~NEEL~~Ch~~v~iP~~~~YPslNL~~AV 156 (253)
T TIGR00050 77 DLVVGTSGARGGDSRNLQRPLLTPRELADKILAKKGWMKVAIVFGREDSGLTNEELEKCHVLVSIPTSEEYPSLNLSHAV 156 (253)
T ss_pred CEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHCCCEEECCCCCCCCHHHHHHHH
T ss_conf 70786267888754344677778366687642420672147885246888766889647815522577887411489999
Q ss_pred H
Q ss_conf 9
Q gi|254781120|r 271 R 271 (384)
Q Consensus 271 ~ 271 (384)
-
T Consensus 157 ~ 157 (253)
T TIGR00050 157 A 157 (253)
T ss_pred H
T ss_conf 9
No 149
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase; InterPro: IPR004484 This family describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of cobyrinic acid to cobyrinic acid a,c-diamide via the intermediate formation of cobyrinic acid c-monoamide or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation .; GO: 0042242 cobyrinic acid ac-diamide synthase activity, 0009236 cobalamin biosynthetic process.
Probab=24.28 E-value=21 Score=16.68 Aligned_cols=178 Identities=17% Similarity=0.227 Sum_probs=94.5
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHCCC-CCCCCCCCCCE--EEEE--ECCCCHHHHHHHCC-CCCCEEEEEECCCCH
Q ss_conf 861101441014544542899999960376-84577877536--8885--13874147886012-565179984045511
Q gi|254781120|r 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIAS-DSMGLSFSKRR--ITLS--TSGFVPNIARVGEE-IGVMLAISLHAVSND 249 (384)
Q Consensus 176 ~~~i~NiVfMGmGEPl~N~d~v~~ai~~l~-~~~g~~~~~r~--ITvS--T~Gi~p~I~~la~~-~~~~LAiSLha~~~~ 249 (384)
+.+|..|.|==.|--=| +..+..|++-|. +-.-+|.=+|. ++|- --|+||..++|-+. -++-.-+..=....=
T Consensus 143 ~V~l~GVILN~V~~~rH-~~k~k~A~e~L~Pgi~vlG~~pR~~~l~~p~RHLGLVpa~E~l~~~~~~~~~~la~~~e~~l 221 (464)
T TIGR00379 143 DVKLKGVILNRVGSERH-LEKLKTAVEKLAPGIEVLGVIPRKEDLKVPDRHLGLVPAVERLDEIIQQILDWLAEVVEKYL 221 (464)
T ss_pred CCEEEEEEEEEECCHHH-HHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 83178788731077446-89999998863689458877736753214775465316613531789999999999999744
Q ss_pred HHHHHCCCC-CCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 344412331-2578999999999998625894599999872699988899999999832545316675127788798868
Q gi|254781120|r 250 LRNILVPIN-RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 (384)
Q Consensus 250 ~R~~lmPi~-~~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N~~~~~~~~~ 328 (384)
-=++|+||. +..++..-+..+++-. .++..||.+. -=+-.| --.++-|-.| -.|...||||||..+.. -|
T Consensus 222 D~~kl~~i~~~~~~~~~~~~~~~~~~-~~~~~kiava--~D~aFn--FYY~dNld~L---~~~~a~l~ffspL~D~e-LP 292 (464)
T TIGR00379 222 DLDKLLEIAEKARELDSEMELLWEDE-NKKYVKIAVA--RDQAFN--FYYQDNLDAL---EENAAELVFFSPLEDKE-LP 292 (464)
T ss_pred CHHHHHHHHCCCCCCCCCCCCCCCCC-CCCCEEEEEE--EECCCC--HHHHHHHHHH---HHCCCEEEEECCCCCCC-CC
T ss_conf 97798887406787777521012345-6772378999--733214--0357789999---74782798517766877-97
Q ss_pred CCHHHH-------HHHHHHHHHCCCEEEECCC------CCCCCCCCCCCCH
Q ss_conf 898999-------9999999987987854158------7771001120021
Q gi|254781120|r 329 SDQKDI-------VTFSECIKRSGYSSPIRTP------RGLDILAACGQLK 366 (384)
Q Consensus 329 ~~~~~i-------~~F~~~L~~~Gi~~tiR~s------rG~DI~aACGQL~ 366 (384)
|+-+.+ +-|.+-|.+ +..+|.+ -|.=|.|=||=|=
T Consensus 293 PdvD~lYiGGGfPElFae~L~~---N~~l~~~i~~f~~~G~P~YGECGGLM 340 (464)
T TIGR00379 293 PDVDALYIGGGFPELFAEELEK---NEKLRDSIKEFIQQGRPIYGECGGLM 340 (464)
T ss_pred CCCCEEEECCCCHHHHHHHHHH---HHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf 1215765078852453653344---48999999999737883898506044
No 150
>TIGR01706 NAPA periplasmic nitrate reductase, large subunit; InterPro: IPR010051 This entry represents the large subunit of a family of nitrate reductases found in proteobacteria which are localised to the periplasm. This subunit binds molybdopterin and contains a twin-arginine motif at the N terminus. The protein associates with NapB, a soluble haem-containing protein and NapC, a membrane-bound cytochrome c. The periplasmic nitrate reductases are not involved in the assimilation of nitrogen, and are not directly involved in the formation of electrochemical gradients (i.e. respiration) either. Rather, the purpose of this enzyme is either dissimilatory (i.e. to dispose of excess reductive equivalents) or indirectly respiratory by virtue of the consumption of electrons derived from NADH via the proton translocating NADH dehydrogenase. The enzymes from Alicagenes eutrophus and Paracoccus pantotrophus have been characterised. In Escherichia coli (as well as other organisms) this gene is part of a large nitrate reduction operon (napFDAGHBC).; GO: 0008940 nitrate reductase activity, 0030151 molybdenum ion binding, 0051539 4 iron 4 sulfur cluster binding, 0042128 nitrate assimilation.
Probab=24.26 E-value=25 Score=16.03 Aligned_cols=48 Identities=13% Similarity=0.236 Sum_probs=18.5
Q ss_pred HHCCCCCCCCEEEEEEC-CCCCCCEEEECCCCCCCCCEEEEEEECCCCC
Q ss_conf 62022578702346531-4544303775247777898155443023467
Q gi|254781120|r 65 NQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKS 112 (384)
Q Consensus 65 ~e~~~i~~l~iv~~~~S-~DGT~K~L~~l~d~~~~dg~~IEsVlip~~~ 112 (384)
.|-..|.-.+|.++..| .+.+.=..+-+......|=..++-|+-|.-+
T Consensus 219 AEMHPiLW~Rv~dRrLs~~~~v~V~vLSTf~~R~~~lAD~~iiF~P~~D 267 (930)
T TIGR01706 219 AEMHPILWTRVTDRRLSNHPKVKVVVLSTFTHRSFDLADIGIIFKPQTD 267 (930)
T ss_pred HHHCCHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHCCCCEEECCCCC
T ss_conf 2204202200021003778841689863123320222277402358841
No 151
>KOG0335 consensus
Probab=24.21 E-value=51 Score=13.80 Aligned_cols=128 Identities=19% Similarity=0.202 Sum_probs=72.7
Q ss_pred CCHHHHHHHC----CCCCCEEEEEE-CCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHH
Q ss_conf 7414788601----25651799840-455113444123312578999999999998625894599999872699988899
Q gi|254781120|r 224 FVPNIARVGE----EIGVMLAISLH-AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 (384)
Q Consensus 224 i~p~I~~la~----~~~~~LAiSLh-a~~~~~R~~lmPi~~~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~ 298 (384)
.+..|.+++- +..+.|||.-- ++.+....++..+++.+....|++-+..-..-...--+++|-+|+-- -+.+-
T Consensus 272 fp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFv--Et~~~ 349 (482)
T KOG0335 272 FPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFV--ETKRG 349 (482)
T ss_pred CCHHHHHHHHHHHHHCCEEEEEEEECCCCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEE--ECCHH
T ss_conf 7756664478876415138887530466656346766421113578999886134678665776431389996--13003
Q ss_pred HHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCC
Q ss_conf 9999998325453166751277887988688989999999999987987854158777100
Q gi|254781120|r 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 (384)
Q Consensus 299 a~~L~~ll~~~~~~vNLIp~N~~~~~~~~~~~~~~i~~F~~~L~~~Gi~~tiR~srG~DI~ 359 (384)
|..|+.++...+ ++|-++.+..-+.--.+.+..|. -.....+.+|==.+||-||-
T Consensus 350 ~d~l~~~l~~~~-----~~~~sIhg~~tq~er~~al~~Fr-~g~~pvlVaT~VaaRGlDi~ 404 (482)
T KOG0335 350 ADELAAFLSSNG-----YPAKSIHGDRTQIEREQALNDFR-NGKAPVLVATNVAARGLDIP 404 (482)
T ss_pred HHHHHHHHHCCC-----CCCEEECCHHHHHHHHHHHHHHH-CCCCCEEEEEHHHHCCCCCC
T ss_conf 269999986179-----87456033255637999987764-69866798703665478876
No 152
>cd00727 malate_synt_A Malate synthase A (MSA), present in some bacteria, plants and fungi. Prokaryotic MSAs tend to be monomeric, whereas eukaryotic enzymes are homomultimers. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA, which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=24.17 E-value=51 Score=13.79 Aligned_cols=19 Identities=5% Similarity=0.265 Sum_probs=13.7
Q ss_pred CCCCCCCCCCCCCEEEEEE
Q ss_conf 3768457787753688851
Q gi|254781120|r 203 IASDSMGLSFSKRRITLST 221 (384)
Q Consensus 203 ~l~~~~g~~~~~r~ITvST 221 (384)
++.-|.|+.+-.+|++|--
T Consensus 140 L~vRpRG~HL~E~hv~vdG 158 (511)
T cd00727 140 LIVRPRGWHLPEKHVLVDG 158 (511)
T ss_pred EEEECCCCCCCCCCEEECC
T ss_conf 8861886686877755878
No 153
>pfam00070 Pyr_redox Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=24.10 E-value=51 Score=13.78 Aligned_cols=48 Identities=13% Similarity=0.121 Sum_probs=34.9
Q ss_pred HHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf 999999832545316675127788798868898999999999998798785
Q gi|254781120|r 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349 (384)
Q Consensus 299 a~~L~~ll~~~~~~vNLIp~N~~~~~~~~~~~~~~i~~F~~~L~~~Gi~~t 349 (384)
+-+++..++.+.++|.+|-..+..-. .-+.+-.+.+.+.|++.|+.+.
T Consensus 11 g~E~A~~l~~~G~~Vtiie~~~~~l~---~~d~~~~~~~~~~l~~~GV~i~ 58 (82)
T pfam00070 11 GLEFASALAKLGSKVTVVERRDRLLR---GFDEEIAKILQEKLEKNGIEVL 58 (82)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCCH---HCCHHHHHHHHHHHHHCCCEEE
T ss_conf 99999999863927899812573302---2798899999999986699997
No 154
>TIGR01990 bPGM beta-phosphoglucomutase; InterPro: IPR010972 This model represents the beta-phosphoglucomutase enzyme which catalyses the interconversion of beta-D-glucose-1-phosphate and beta-D-glucose-6-phosphate. The 6-phosphate is capable of non-enzymatic anomerization (alpha to beta or vice versa) while the 1-phosphate is not. A separate enzyme is responsible for the isomerisation of the alpha anomers. Beta-D-glucose-1-phosphate results from the phosphorolysis of maltose (2.4.1.8 from EC), trehalose (2.4.1.64 from EC) or trehalose-6-phosphate (2.4.1.216 from EC). Alternatively, these reactions can be run in the synthetic direction to create the disaccharides. All sequenced genomes which contain a member of this family also appear to contain at least one putative maltose or trehalose phosphorylase. Three species, Lactococcus, Enterococcus and Neisseria appear to contain a pair of paralogous beta-PGM's. Beta-phosphoglucomutase is a member of the haloacid dehalogenase superfamily of hydrolase enzymes. These enzymes are characterised by a series of three catalytic motifs positioned within an alpha-beta (Rossman) fold . Beta-PGM contains an inserted alpha helical domain in between the first and second conserved motifs and thus is a member of subfamily IA of the superfamily , . The third catalytic motif comes in three variants, the third of which, containing a conserved DD or ED, is the only one found here as well as in several other related enzymes. The enzyme from Lactococcus lactis has been extensively characterised including a remarkable crystal structure which traps the pentacoordinate transition state . .
Probab=24.03 E-value=11 Score=18.82 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=14.0
Q ss_pred EEEEECCCCHHHHHHHCCC-----CCCEE-EEEECCC
Q ss_conf 8885138741478860125-----65179-9840455
Q gi|254781120|r 217 ITLSTSGFVPNIARVGEEI-----GVMLA-ISLHAVS 247 (384)
Q Consensus 217 ITvST~Gi~p~I~~la~~~-----~~~LA-iSLha~~ 247 (384)
||.++ |-|||..|.+++ ++.|| .|-|||.
T Consensus 88 lTp~d--~LPGi~~lL~~Lk~~~ikialASaSkNA~~ 122 (190)
T TIGR01990 88 LTPED--VLPGIKSLLEDLKKKNIKIALASASKNAPT 122 (190)
T ss_pred CCHHH--HCCCHHHHHHHHHHCCCCEEEEEHHHHHHH
T ss_conf 89866--040189999999984894887302344899
No 155
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=23.94 E-value=51 Score=13.76 Aligned_cols=111 Identities=15% Similarity=0.168 Sum_probs=60.2
Q ss_pred CCCCHHHHHHHHHHHHHCCCCC-CCCCCCCCEEEEEECCCCHHHHHHHCCCCCCEEEEEECCCCHHH---------HHHC
Q ss_conf 1454454289999996037684-57787753688851387414788601256517998404551134---------4412
Q gi|254781120|r 186 GMGEPLCNFDNVKKSLSIASDS-MGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLR---------NILV 255 (384)
Q Consensus 186 GmGEPl~N~d~v~~ai~~l~~~-~g~~~~~r~ITvST~Gi~p~I~~la~~~~~~LAiSLha~~~~~R---------~~lm 255 (384)
.+|..+.+.+..+..+....++ -|+-+-.-|....-....+.|++.+.. -.-+|..+.... ...+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~v~~~lD~~H~~~~~~d~~~~~~~~~~r-----I~hvH~kD~~~~~~~~~~~~~~~~~ 223 (274)
T COG1082 149 HPGNVVETGADALDLLREVDSPNVGLLLDTGHAFFAGEDPLEAIRKLGDR-----IGHVHLKDADGPTLDIVNFLGQHLP 223 (274)
T ss_pred CCCCEECCHHHHHHHHHHCCCCCEEEEEEHHHHHHHCCCHHHHHHHHHCC-----EEEEEECCCCCCCCCCCCCCCCEEC
T ss_conf 77762068589999998556887799988677878477779999984270-----6799862478875544566673017
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 3312578999999999998625894599999872699988899999999832
Q gi|254781120|r 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 (384)
Q Consensus 256 Pi~~~~~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~ 307 (384)
|-...-++.+++.++++.. .+ | .+++|.-- -++..+.+..-.+.++
T Consensus 224 pG~G~id~~~i~~~L~~~g-y~-g-~~~iE~~~---~~~~~~~~~~~~~~l~ 269 (274)
T COG1082 224 PGDGDIDFKAIFSALREAG-YD-G-WLVVEVFA---PNDAEEYAREALEFLR 269 (274)
T ss_pred CCCCCCCHHHHHHHHHHCC-CC-E-EEEEEECC---CCCCHHHHHHHHHHHH
T ss_conf 8886768899999999679-96-2-69998537---6671789999999999
No 156
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=23.85 E-value=31 Score=15.44 Aligned_cols=97 Identities=14% Similarity=0.189 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHH-HHH--HHCCCCCCEEEEEECCCCHHHHH---HCCCCCCCCHHH
Q ss_conf 428999999603768457787753688851387414-788--60125651799840455113444---123312578999
Q gi|254781120|r 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN-IAR--VGEEIGVMLAISLHAVSNDLRNI---LVPINRKYPLEM 265 (384)
Q Consensus 192 ~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~-I~~--la~~~~~~LAiSLha~~~~~R~~---lmPi~~~~~l~~ 265 (384)
..|-.-..|+.-|+..-...++++.|+|-+ |.|+ +.. +.+..--..+-.+..+.++.++. -+|..|--..+|
T Consensus 152 ~~Y~asK~al~~ltk~lA~e~a~~gIrVN~--I~PG~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl~R~g~p~d 229 (259)
T PRK12384 152 SGYSAAKFGGVGLTQSLALDLAEYGITVHS--LMLGNLLKSPMFQSLLPQYAKKLGIKPDEVEQYYIDKVPLKRGCDYQD 229 (259)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCEEEEE--EECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHH
T ss_conf 067999999999999999996231979999--838871567666665587887729998999999984799899969999
Q ss_pred HHHHHHHHHHHCCCCEEEEEEEEECC
Q ss_conf 99999999862589459999987269
Q gi|254781120|r 266 LIDACRHYPGLSNARRITFEYVMLKG 291 (384)
Q Consensus 266 l~~a~~~y~~~~~~rrit~EYvli~g 291 (384)
+-+++-....-. .+.||=+-+.++|
T Consensus 230 iA~~v~fL~S~~-a~~iTG~~i~vDG 254 (259)
T PRK12384 230 VLNMLLFYASPK-ASYCTGQSINVTG 254 (259)
T ss_pred HHHHHHHHHCCH-HCCCCCCEEEECC
T ss_conf 999999995856-3380387289897
No 157
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase; InterPro: IPR011857 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyzes the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals . Three classes of PMI have been defined . These bifunctional isomerases form a distinct phylogenetic cluster within the larger phosphoglucose isomerase (PGI) superfamily . They show relatively low sequence identity to other PGIs, but contain similar structural elements and show almost complete conservation of the catalytic residues in the active site, indicating they use a similar catalytic mechanism . The family appears to have originated in the archaea, with the bacterial proteins being acquired through horizontal transfer.; GO: 0004347 glucose-6-phosphate isomerase activity, 0004476 mannose-6-phosphate isomerase activity.
Probab=23.59 E-value=34 Score=15.14 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=16.0
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCCCC
Q ss_conf 28999999603768457787753688851387414788601256
Q gi|254781120|r 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236 (384)
Q Consensus 193 N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~I~~la~~~~ 236 (384)
|..+.+.+.+..... + .++-+=||| -++.++|++..
T Consensus 84 NT~ETl~~~e~A~~~-~-----~~~~aITSG--G~L~e~A~e~g 119 (338)
T TIGR02128 84 NTEETLSAVEEAKKK-G-----AKVIAITSG--GKLEEMAKEEG 119 (338)
T ss_pred CHHHHHHHHHHHHHC-C-----CCEEEEECC--CHHHHHCCCCC
T ss_conf 668999999999865-7-----955999448--53886301148
No 158
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=23.59 E-value=52 Score=13.72 Aligned_cols=207 Identities=18% Similarity=0.232 Sum_probs=110.5
Q ss_pred EEEE-ECCCCHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEE-CC----CC
Q ss_conf 8988-406510048613224411102789899999999999972220344443434445458611014410-14----54
Q gi|254781120|r 116 LCVS-SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM-GM----GE 189 (384)
Q Consensus 116 ~CvS-SQvGC~m~C~FCaTg~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfM-Gm----GE 189 (384)
.-|| |-.=|.++|+-|+.--.--.=..|.++++....-+.+.= ...+..- || -=
T Consensus 12 ~sISVTG~yC~lnC~HCg~~~L~~Mi~vt~~~l~k~~~el~kkG--------------------y~g~llSGGm~srg~V 71 (275)
T COG1856 12 ISISVTGAYCSLNCPHCGRHYLEHMIKVTTKSLLKRCMELEKKG--------------------YEGCLLSGGMDSRGKV 71 (275)
T ss_pred CEEEEECCCEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--------------------CEEEEEECCCCCCCCC
T ss_conf 23788636357538177799998752532577888999998457--------------------6058975786879974
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCH--HHHHHHCC-CCCCEEEEEEC-CCCHHHHHHCCCCCCCCHHH
Q ss_conf 4542899999960376845778775368885138741--47886012-56517998404-55113444123312578999
Q gi|254781120|r 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP--NIARVGEE-IGVMLAISLHA-VSNDLRNILVPINRKYPLEM 265 (384)
Q Consensus 190 Pl~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p--~I~~la~~-~~~~LAiSLha-~~~~~R~~lmPi~~~~~l~~ 265 (384)
||.-|.+-++++. +..||-+ .--+|++. -.++|.++ ..+ +||.- .+++.=.++--+++ +.+.
T Consensus 72 Pl~kf~d~lK~lk---e~~~l~i------naHvGfvdE~~~eklk~~~vdv---vsLDfvgDn~vIk~vy~l~k--sv~d 137 (275)
T COG1856 72 PLWKFKDELKALK---ERTGLLI------NAHVGFVDESDLEKLKEELVDV---VSLDFVGDNDVIKRVYKLPK--SVED 137 (275)
T ss_pred CHHHHHHHHHHHH---HHHCEEE------EEEEEECCHHHHHHHHHHCCCE---EEEEECCCHHHHHHHHCCCC--CHHH
T ss_conf 2899999999987---7537489------9985100178899998716868---99861277489999976886--3777
Q ss_pred HHHHHHHHHHHCCCCEEEEEEEE---ECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCC-CCCCCCCHHHHHHHHHHH
Q ss_conf 99999999862589459999987---26999888999999998325453166751277887-988688989999999999
Q gi|254781120|r 266 LIDACRHYPGLSNARRITFEYVM---LKGINDSPRDALNLIKILKGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECI 341 (384)
Q Consensus 266 l~~a~~~y~~~~~~rrit~EYvl---i~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N~~~~-~~~~~~~~~~i~~F~~~L 341 (384)
-+..++... .++-||.+.-++ ..++.-..+..+-|++.--+-.+.+-|||+--+.- ..+.+|.++.++.|. +-
T Consensus 138 yl~~l~~L~--e~~irvvpHitiGL~~gki~~e~kaIdiL~~~~~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~-~A 214 (275)
T COG1856 138 YLRSLLLLK--ENGIRVVPHITIGLDFGKIHGEFKAIDILVNYEPDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVK-YA 214 (275)
T ss_pred HHHHHHHHH--HCCCEECEEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCHHCCCCCCCCHHHHHHHHH-HH
T ss_conf 788999999--709425305999731685233387889986079973999998138850105779769899999999-99
Q ss_pred HHCCCEEEECCCCCCCCCCCCCCCHHH
Q ss_conf 987987854158777100112002102
Q gi|254781120|r 342 KRSGYSSPIRTPRGLDILAACGQLKSL 368 (384)
Q Consensus 342 ~~~Gi~~tiR~srG~DI~aACGQL~~~ 368 (384)
++ ..-..+.-+|-|=+.+
T Consensus 215 R~---------~f~~pv~iGCmrP~Ge 232 (275)
T COG1856 215 RK---------KFPNPVSIGCMRPRGE 232 (275)
T ss_pred HH---------HCCCCEEEEECCCCCH
T ss_conf 98---------5899746741476753
No 159
>pfam07498 Rho_N Rho termination factor, N-terminal domain. The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It it thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers. This domain is found to the N-terminus of the RNA binding domain (pfam07497).
Probab=23.36 E-value=53 Score=13.68 Aligned_cols=39 Identities=23% Similarity=0.207 Sum_probs=30.9
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 7358998999999998699854577558999999987179
Q gi|254781120|r 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGI 47 (384)
Q Consensus 8 ~L~~ls~~EL~~~l~~~G~p~~~~~fRa~QI~~wiy~k~v 47 (384)
.|..+++.||.+...++|.+ +..++|=.++.-.|.+..+
T Consensus 1 eL~~~~~~eL~~iA~elgI~-~~s~~rKqeLIf~Ilk~qa 39 (43)
T pfam07498 1 ELKEKTLAELREIAKELGIE-NYSRLRKQELIFAILKAQA 39 (43)
T ss_pred CCCCCCHHHHHHHHHHCCCC-CCCCCCHHHHHHHHHHHHH
T ss_conf 93318899999999994998-7001459999999999997
No 160
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=23.35 E-value=53 Score=13.68 Aligned_cols=30 Identities=10% Similarity=-0.036 Sum_probs=22.1
Q ss_pred HHHHHCCC--EEEECCCCCCCCCCCCCCCHHH
Q ss_conf 99998798--7854158777100112002102
Q gi|254781120|r 339 ECIKRSGY--SSPIRTPRGLDILAACGQLKSL 368 (384)
Q Consensus 339 ~~L~~~Gi--~~tiR~srG~DI~aACGQL~~~ 368 (384)
..++.+|. ...+--|.|+-+.++|+.|++.
T Consensus 82 ~~~r~~~~~~ri~l~IsGGRK~Ms~~l~l~aq 113 (124)
T TIGR03642 82 KKERENYGCERIIVNISGGRKIMTIILALYAQ 113 (124)
T ss_pred HHHHHCCCCCEEEEEECCCHHHHHHHHHHHHH
T ss_conf 99996588733899952873999999999999
No 161
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=23.20 E-value=30 Score=15.51 Aligned_cols=13 Identities=31% Similarity=0.851 Sum_probs=8.9
Q ss_pred HCCCCCCCCCCHH
Q ss_conf 0486132244111
Q gi|254781120|r 126 LTCSFCYTGTQKL 138 (384)
Q Consensus 126 m~C~FCaTg~~G~ 138 (384)
|.|+||.+...-.
T Consensus 1 M~CPfC~~~~tkV 13 (156)
T COG1327 1 MKCPFCGHEDTKV 13 (156)
T ss_pred CCCCCCCCCCCEE
T ss_conf 9799879998762
No 162
>pfam04690 YABBY YABBY protein. YABBY proteins are a group of plant-specific transcription involved in the specification of abaxial polarity in lateral organs.
Probab=22.96 E-value=26 Score=15.89 Aligned_cols=17 Identities=41% Similarity=0.737 Sum_probs=11.1
Q ss_pred EECCCCHHCCCCCCCCC
Q ss_conf 84065100486132244
Q gi|254781120|r 119 SSQVGCSLTCSFCYTGT 135 (384)
Q Consensus 119 SSQvGC~m~C~FCaTg~ 135 (384)
+|-==|-+-|.||.|=.
T Consensus 6 ~sE~lCYV~CnfC~TiL 22 (170)
T pfam04690 6 SSEHVCYVHCNFCTTIL 22 (170)
T ss_pred CCCCEEEEECCCCCCEE
T ss_conf 87266631147868177
No 163
>pfam01171 ATP_bind_3 PP-loop family. This family of proteins belongs to the PP-loop superfamily.
Probab=22.94 E-value=54 Score=13.63 Aligned_cols=18 Identities=17% Similarity=0.313 Sum_probs=7.6
Q ss_pred CCCHHHHHHHHHHHHHCCCEE
Q ss_conf 889899999999999879878
Q gi|254781120|r 328 CSDQKDIVTFSECIKRSGYSS 348 (384)
Q Consensus 328 ~~~~~~i~~F~~~L~~~Gi~~ 348 (384)
.-+++.+.+| +..+|++.
T Consensus 146 ~~~k~ei~~~---a~~~~l~~ 163 (182)
T pfam01171 146 KVTKSEIEEY---LKEHGIPW 163 (182)
T ss_pred CCCHHHHHHH---HHHCCCCE
T ss_conf 4889999999---99869936
No 164
>cd01582 Homoaconitase Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase catalytic domain. Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases.
Probab=22.87 E-value=54 Score=13.62 Aligned_cols=67 Identities=16% Similarity=0.182 Sum_probs=40.9
Q ss_pred EEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHH-----HHHHHHHCCCEE
Q ss_conf 59999987269998889999999983254531667512778879886889899999-----999999879878
Q gi|254781120|r 281 RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVT-----FSECIKRSGYSS 348 (384)
Q Consensus 281 rit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N~~~~~~~~~~~~~~i~~-----F~~~L~~~Gi~~ 348 (384)
+|...|+- .=-|-+.+|.+.-+++|++...+...++.+|.-..-..|.|..-..+ ..++|.+.|..+
T Consensus 234 ~Id~a~IG-SCTNgr~eDl~~AA~iL~g~~~~~~~~~v~p~Vr~~v~PgS~~V~~~a~~~Gl~~~f~~aGa~i 305 (363)
T cd01582 234 KINKAYLV-SCTNSRASDIAAAADVVKGKKEKNGKIPVAPGVEFYVAAASSEVQAAAEKNGDWQTLLEAGATP 305 (363)
T ss_pred CEEEEEEE-ECCCCCCHHHHHHHHHHHHHHHHCCCCEECCCCEEEEECCCHHHHHHHHHCCCHHHHHHCCCEE
T ss_conf 32479997-5799998899999999986554037850189814998438488899999876098999879889
No 165
>TIGR01083 nth endonuclease III; InterPro: IPR005759 The spectrum of DNA damage caused by reactive oxygen species includes a wide variety of modifications of purine and pyrimidine bases. Among these modified bases, 7,8-dihydro-8-oxoguanine (8-oxoG) is an important mutagenic lesion. Base excision repair is a critical mechanism for preventing mutations by removing the oxidative lesion from the DNA. Escherichia coli Nth protein (endonuclease III) has an 8-oxoG DNA glycosylase/AP lyase activity which removes 8-oxoG preferentially from 8-oxoG/G mispairs. Human hNTH1 protein, a homolog of E. coli Nth protein, has similar DNA glycosylase/AP lyase activity that removes 8-oxoG from 8-oxoG/G mispairs . ; GO: 0003906 DNA-(apurinic or apyrimidinic site) lyase activity, 0006284 base-excision repair, 0005622 intracellular.
Probab=22.81 E-value=39 Score=14.63 Aligned_cols=54 Identities=26% Similarity=0.324 Sum_probs=30.3
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf 73589989999999986998545775589999999871799967833478899999862022578702346531454
Q gi|254781120|r 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDG 84 (384)
Q Consensus 8 ~L~~ls~~EL~~~l~~~G~p~~~~~fRa~QI~~wiy~k~v~~f~~MtnLpk~lR~~L~e~~~i~~l~iv~~~~S~DG 84 (384)
.|+..++|||++.+++.|+ || +.+.++- ++-..|-|.|.=..|.-.++..|=+|
T Consensus 61 ~~a~a~~eel~~~Ik~iGl------Yr----------~KAk~I~-------~~~~~LvE~y~GeVP~~~~eL~~LPG 114 (192)
T TIGR01083 61 ALAAAGLEELEEYIKSIGL------YR----------NKAKNII-------ALCRKLVERYGGEVPEDREELVKLPG 114 (192)
T ss_pred HHHCCCHHHHHHHHHCCCC------CH----------HHHHHHH-------HHHHHHHHHHCCCCCCCHHHHHCCCC
T ss_conf 9960893134776422586------45----------6899999-------99999999818987755376617899
No 166
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=22.72 E-value=54 Score=13.60 Aligned_cols=13 Identities=8% Similarity=0.033 Sum_probs=6.2
Q ss_pred HHHHHHHHCCCEE
Q ss_conf 9999999879878
Q gi|254781120|r 336 TFSECIKRSGYSS 348 (384)
Q Consensus 336 ~F~~~L~~~Gi~~ 348 (384)
.+.+.|.+.|+.+
T Consensus 318 ~~~~~l~e~gV~v 330 (364)
T PRK07865 318 DTVAWLAERGILV 330 (364)
T ss_pred HHHHHHHHCCEEE
T ss_conf 9999999799899
No 167
>cd01583 IPMI 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate. Aconatase-like catalytic domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes.
Probab=22.35 E-value=55 Score=13.55 Aligned_cols=63 Identities=21% Similarity=0.228 Sum_probs=34.8
Q ss_pred CEEEEEEEEECC-CCCCHHHHHHHHHHHCCCCCE--EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf 459999987269-998889999999983254531--667512778879886889899999999999879878
Q gi|254781120|r 280 RRITFEYVMLKG-INDSPRDALNLIKILKGIPAK--INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSS 348 (384)
Q Consensus 280 rrit~EYvli~g-vNDs~e~a~~L~~ll~~~~~~--vNLIp~N~~~~~~~~~~~~~~i~~F~~~L~~~Gi~~ 348 (384)
.+|...| |.. -|-+.+|.+.-+++++|++++ |.+|- +|+|. .--....-+-..++|.+.|..+
T Consensus 259 ~~Id~~~--IGSCTngr~~Dl~~aA~iL~g~kv~~~Vr~~v---~PgS~-~V~~~a~~~Gl~~~l~~aG~~i 324 (382)
T cd01583 259 IKIDQVF--IGSCTNGRLEDLRAAAEILKGRKVADGVRLIV---VPASQ-RVYKQAEKEGLIEIFIEAGAEV 324 (382)
T ss_pred CCCCEEE--ECCCCCCCCHHHHHHHHHHCCCCCCCCEEEEE---CCCCH-HHHHHHHHCCCHHHHHHCCCEE
T ss_conf 7356899--63366899879999999863788788624886---15878-9999999877499999779789
No 168
>TIGR00433 bioB biotin synthase; InterPro: IPR002684 Biotin synthase 2.8.1.6 from EC works with flavodoxin, S-adenosylmethionine, and possibly cysteine to catalyze the last step of the biotin biosynthetic pathway. The reaction consists of the introduction of a sulphur atom into dethiobiotin, thus requiring activation of C-H bonds . Biotin (vitamin H) is a prosthetic group in enzymes catalysing carboxylation and transcarboxylation reactions . Biotin synthase from Escherichia coli is a homodimer of 76 kDa, with each polypeptide chain carrying an oxygen-sensitive (4Fe-4S) cluster, probably ligated by three cysteines of a CXXXCXXC box conserved among all known BioB sequences and a fourth still not identified ligand. BioB displays a pyridoxal phosphate-dependent cysteine desulphurase activity, which allows mobilization of the sulphur atom from free cysteine . ; GO: 0004076 biotin synthase activity, 0009102 biotin biosynthetic process.
Probab=22.32 E-value=55 Score=13.54 Aligned_cols=150 Identities=14% Similarity=0.226 Sum_probs=97.3
Q ss_pred HHHHHHHHHCCCCC--CCCCCCCCEEEEEECCCCH--HHHHHHC-CCC-CCEEEEEECCCCHHHHHHCCCCCCCCHHHHH
Q ss_conf 89999996037684--5778775368885138741--4788601-256-5179984045511344412331257899999
Q gi|254781120|r 194 FDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVP--NIARVGE-EIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLI 267 (384)
Q Consensus 194 ~d~v~~ai~~l~~~--~g~~~~~r~ITvST~Gi~p--~I~~la~-~~~-~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~ 267 (384)
+..++.++...... .|+. +.-|.|.+. +.++|.+ .+. +|= =|.++.++.-++|+- .+..++=+
T Consensus 137 f~~~v~~~~~~~~~ee~GL~------~C~~LG~l~~eqa~~LKdAGld~YNH--Nl~~TS~~~y~~I~s---Thty~DR~ 205 (350)
T TIGR00433 137 FIEIVEAVVKIVEEEELGLK------TCATLGLLDPEQAKQLKDAGLDRYNH--NLDETSQEYYSKIIS---THTYDDRV 205 (350)
T ss_pred HHHHHHHHHHHHHHCCCCCH------HHHCCCCCCHHHHHHHHHCCCCCCCC--CHHHHHHHHCCCCEE---CCCHHHHH
T ss_conf 88999999999752003712------23203776889999888638861116--736787876687343---23077679
Q ss_pred HHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECC---CCCCCC----CCCCCHHHHH--HHH
Q ss_conf 9999998625894599999872699988899999999832545316675127---788798----8688989999--999
Q gi|254781120|r 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFN---PWPGCE----YLCSDQKDIV--TFS 338 (384)
Q Consensus 268 ~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLIp~N---~~~~~~----~~~~~~~~i~--~F~ 338 (384)
+.++.-. .+ |=.+= ===|=|.|-|.+|--.|+.-|+.++-.+.=+|.| |++|.| ..-|..+.+. .|.
T Consensus 206 ~T~~~~k-~a-Gl~~C--sGGI~GlgEt~~DrI~l~~~L~~L~p~peSvPiN~L~~~~GTP~~E~L~~~~~~~L~~~~~L 281 (350)
T TIGR00433 206 DTVKNAK-EA-GLKVC--SGGILGLGETWEDRIGLALALANLSPEPESVPINFLVKIEGTPAYEKLADGEVKKLSADDAL 281 (350)
T ss_pred HHHHHHH-HC-CCCCC--CCCEECCCCCHHHHHHHHHHHHCCCCCCCEECCCCEECCCCCCCHHHHCCCCCCCCCHHHHH
T ss_conf 9999999-73-88724--46234589888999999999752776787011132026888853443158886733889999
Q ss_pred HHHHHCCCEE---EECCCCCCCC
Q ss_conf 9999879878---5415877710
Q gi|254781120|r 339 ECIKRSGYSS---PIRTPRGLDI 358 (384)
Q Consensus 339 ~~L~~~Gi~~---tiR~srG~DI 358 (384)
+.+.-+.|.- .||-+-|+..
T Consensus 282 k~iA~ari~mP~~~iRlagGR~~ 304 (350)
T TIGR00433 282 KTIALARIIMPKAEIRLAGGREV 304 (350)
T ss_pred HHHHHHHHHCCCCEEEEECCEEE
T ss_conf 99999886543110010025145
No 169
>TIGR00559 pdxJ pyridoxal phosphate biosynthetic protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). PLP is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination , , . PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors . Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy . PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalyzed reactions, enzymatic and non-enzymatic . In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised , , . This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm.
Probab=22.04 E-value=56 Score=13.50 Aligned_cols=57 Identities=11% Similarity=0.180 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCC---CCCCCCCC-CHHHHHHHHHHHHHCCCEEEECC
Q ss_conf 89999999983254531667512778---87988688-98999999999998798785415
Q gi|254781120|r 296 PRDALNLIKILKGIPAKINLIPFNPW---PGCEYLCS-DQKDIVTFSECIKRSGYSSPIRT 352 (384)
Q Consensus 296 ~e~a~~L~~ll~~~~~~vNLIp~N~~---~~~~~~~~-~~~~i~~F~~~L~~~Gi~~tiR~ 352 (384)
.|...+++.-+|..|-+|.|.|=++- .+.+|=-+ ..+++....+.+.+.||.|++-=
T Consensus 73 ~ee~~~~~~~~knkP~~vTlVPe~r~evTtegGLDva~~~dkL~~~~~~~~~~GI~vSlFI 133 (265)
T TIGR00559 73 TEEMIEIAVEIKNKPEKVTLVPEKRDEVTTEGGLDVARLKDKLKELVKRLHEAGIEVSLFI 133 (265)
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 1899999998558997387416988603026440001104679999999986798587742
No 170
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=22.01 E-value=56 Score=13.50 Aligned_cols=19 Identities=0% Similarity=-0.043 Sum_probs=11.3
Q ss_pred CCCCCHHHHHHHHHHHHHC
Q ss_conf 8688989999999999987
Q gi|254781120|r 326 YLCSDQKDIVTFSECIKRS 344 (384)
Q Consensus 326 ~~~~~~~~i~~F~~~L~~~ 344 (384)
..+|+.+-++.|.++|...
T Consensus 76 Gs~Pp~~IV~~wl~Ll~~~ 94 (172)
T PTZ00242 76 GAPPPRDVVDNWLKLLDQE 94 (172)
T ss_pred CCCCCHHHHHHHHHHHHHH
T ss_conf 9989699999999999998
No 171
>KOG0054 consensus
Probab=22.00 E-value=30 Score=15.48 Aligned_cols=93 Identities=20% Similarity=0.277 Sum_probs=55.9
Q ss_pred EEEEECCCCCCCEEEEEECCCCH--------HCCCCCCCCCCHHHCCCCHHHHHHHH-HHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 54430234677338988406510--------04861322441110278989999999-9999972220344443434445
Q gi|254781120|r 103 IETVYIPEKSRGTLCVSSQVGCS--------LTCSFCYTGTQKLVRNLTAEEILLQV-LLARSLLGDFPGCEDIEGMVIP 173 (384)
Q Consensus 103 IEsVlip~~~r~T~CvSSQvGC~--------m~C~FCaTg~~G~~RNLt~~EIv~Qv-~~~~~~l~~~~~~~~~~~~~~~ 173 (384)
..-+-+.-+.+--+||=-.|||. +|=-.|-.|.....+... .+.|. |.....++
T Consensus 537 L~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs~a---Yv~Q~pWI~ngTvr-------------- 599 (1381)
T KOG0054 537 LKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVA---YVPQQPWIQNGTVR-------------- 599 (1381)
T ss_pred CCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEE---EECCCCHHHCCCHH--------------
T ss_conf 0141589628988999899988889999999658755675599847489---86665564178566--------------
Q ss_pred CCCCCCCEEEEECCCCHHHH--HHHHHHHHHCCCC------CCCCCCCCCEEEEEE
Q ss_conf 45861101441014544542--8999999603768------457787753688851
Q gi|254781120|r 174 SVGRKISNIVMMGMGEPLCN--FDNVKKSLSIASD------SMGLSFSKRRITLST 221 (384)
Q Consensus 174 ~~~~~i~NiVfMGmGEPl~N--~d~v~~ai~~l~~------~~g~~~~~r~ITvST 221 (384)
.||.| |+|++- |+.|++|...-.| -+.--+|.|.||+|-
T Consensus 600 ------eNILF---G~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSG 646 (1381)
T KOG0054 600 ------ENILF---GSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSG 646 (1381)
T ss_pred ------HHHCC---CCCCCHHHHHHHHHHCCCHHHHHHCCCCCCEEECCCCCCCCH
T ss_conf ------75006---870359999999997067767974689875357788627767
No 172
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=21.71 E-value=48 Score=13.96 Aligned_cols=113 Identities=19% Similarity=0.212 Sum_probs=65.4
Q ss_pred CCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHH-HHHHHHHHCCC
Q ss_conf 48613224411102789899999999999972220344443434445458611014410145445428-99999960376
Q gi|254781120|r 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF-DNVKKSLSIAS 205 (384)
Q Consensus 127 ~C~FCaTg~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl~N~-d~v~~ai~~l~ 205 (384)
-|+.|.+|..|+.||=.+.|... ++. + + |. +-.-++|+++ .|++-. ..+..|++.|.
T Consensus 90 ~~P~a~vg~Igi~Rde~T~~p~~--yy~-k-L--------------P~-~i~~~~Vlll---DPmlATG~s~~~ai~~L~ 147 (208)
T PRK00129 90 LIPSARVGHVGAYRDEETLEPVE--YLE-K-L--------------PS-DIDERTVIVV---DPMLATGGSMIAAIDLLK 147 (208)
T ss_pred HCCCCCCCEEEEEECCCCCCEEE--EHH-H-C--------------CC-CCCCCEEEEE---CCHHHCCHHHHHHHHHHH
T ss_conf 68875400588995477777067--563-2-8--------------64-4466879987---855643766999999999
Q ss_pred CCCCCCCCCCEE-EEEECCCCHHHHHHHCCC-CCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 845778775368-885138741478860125-651799840455113444123312578999999999998
Q gi|254781120|r 206 DSMGLSFSKRRI-TLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274 (384)
Q Consensus 206 ~~~g~~~~~r~I-TvST~Gi~p~I~~la~~~-~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~y~ 274 (384)
+. | .++| -||-..-..||+++.+.. .+.+ -.-+-++++-+ +.|=+.-|-+|.++|+
T Consensus 148 ~~-G----~~~I~~v~~ias~~Gi~~v~~~~P~v~I--~ta~iD~~Lne------~~yIvPGlGDaGDR~f 205 (208)
T PRK00129 148 KR-G----AKRIKVLCLVAAPEGIKALEEAHPDVEI--YTAAIDEKLNE------HGYIVPGLGDAGDRAF 205 (208)
T ss_pred HC-C----CCEEEEEEEEECHHHHHHHHHHCCCCEE--EEEEECCCCCC------CCCCCCCCCCHHHHCC
T ss_conf 66-9----9738999999648999999987879789--99983777377------8758479887144124
No 173
>cd01351 Aconitase Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Aconitase catalytic domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. Aconitase, in its active form, contains a 4Fe-4S iron-sulfur cluster; three cysteine residues have been shown to be ligands of the 4Fe-4S cluster. This is the Aconitase core domain, including structural domains 1, 2 and 3, which binds the Fe-S cluster. The aconitase family also contains the following proteins: - Iron-responsive element binding protein (IRE-BP), a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'
Probab=21.68 E-value=57 Score=13.45 Aligned_cols=37 Identities=27% Similarity=0.339 Sum_probs=26.5
Q ss_pred CCEEEEEEEEEC-CCCCCHHHHHHHHHHHCCCCCE--EEEEE
Q ss_conf 945999998726-9998889999999983254531--66751
Q gi|254781120|r 279 ARRITFEYVMLK-GINDSPRDALNLIKILKGIPAK--INLIP 317 (384)
Q Consensus 279 ~rrit~EYvli~-gvNDs~e~a~~L~~ll~~~~~~--vNLIp 317 (384)
+.+|..-| |. =-|-+.+|.+.-++++||.+++ |.+|-
T Consensus 265 ~~~Id~v~--IGSCTngr~eDl~~AA~ilkg~kv~~~vr~~V 304 (389)
T cd01351 265 GTKIDQVL--IGSCTNNRYSDMLAAAKLLKGAKVAPGVRLIV 304 (389)
T ss_pred CCCEEEEE--ECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 55558999--50546899788999999873576688258999
No 174
>cd04708 BAH_plantDCM_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=21.65 E-value=33 Score=15.17 Aligned_cols=17 Identities=41% Similarity=0.618 Sum_probs=12.7
Q ss_pred EECCCCCCCCCCCCCCC
Q ss_conf 54158777100112002
Q gi|254781120|r 349 PIRTPRGLDILAACGQL 365 (384)
Q Consensus 349 tiR~srG~DI~aACGQL 365 (384)
.+++=+-.||+|+||=|
T Consensus 186 ~~~kL~TLDIFAGCGGL 202 (202)
T cd04708 186 KENRLATLDIFAGCGGL 202 (202)
T ss_pred CCCCCCCCCCCCCCCCC
T ss_conf 44654300251576899
No 175
>PRK12373 NADH dehydrogenase subunit E; Provisional
Probab=21.31 E-value=56 Score=13.51 Aligned_cols=36 Identities=22% Similarity=0.420 Sum_probs=18.7
Q ss_pred CCCEEEEEECCCCHHCCC---CCCCCCCHHHCCCCHHHHHHHHH
Q ss_conf 773389884065100486---13224411102789899999999
Q gi|254781120|r 112 SRGTLCVSSQVGCSLTCS---FCYTGTQKLVRNLTAEEILLQVL 152 (384)
Q Consensus 112 ~r~T~CvSSQvGC~m~C~---FCaTg~~G~~RNLt~~EIv~Qv~ 152 (384)
++.|+ ..|-|-=.|. ...-+.. +--|||+.- ++|++
T Consensus 128 G~FTl---~EVECLGAC~nAPmvQIndD-yYEdLTpE~-~~~il 166 (403)
T PRK12373 128 GTLSW---EEVECLGACVNAPMVQIGKD-YYEDLTPER-LEEII 166 (403)
T ss_pred CCEEE---EEEEECCCCCCCCEEEECCC-CCCCCCHHH-HHHHH
T ss_conf 87686---88678342588983787773-235499999-99999
No 176
>PRK05481 lipoyl synthase; Provisional
Probab=21.23 E-value=58 Score=13.39 Aligned_cols=188 Identities=15% Similarity=0.176 Sum_probs=93.3
Q ss_pred CHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCC------HHHHHHHH
Q ss_conf 100486132244111027898999999999999722203444434344454586110144101454------45428999
Q gi|254781120|r 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE------PLCNFDNV 197 (384)
Q Consensus 124 C~m~C~FCaTg~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGE------Pl~N~d~v 197 (384)
|.-+|.||+..+ |--.-|-..|-..=--.++. + .+..+|.-.--- --.-|-++
T Consensus 62 CTR~C~FC~V~t-G~P~~~D~~EP~~vA~av~~-m-------------------~Lk~vViTSV~RDDL~DgGA~hfa~~ 120 (289)
T PRK05481 62 CTRRCPFCDVAT-GRPLPLDPDEPERVAEAVAR-M-------------------GLKYVVITSVDRDDLPDGGAQHFAET 120 (289)
T ss_pred CCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHH-H-------------------CCCEEEEEEECCCCCCCCCHHHHHHH
T ss_conf 657887740788-99898870307999999998-2-------------------89769996341666656554999999
Q ss_pred HHHHHCCCCCCCCCCCCCEEEEEEC---CCCHH-HHHHHCCCCCCEEEEEECCCCHHHHHHCCCCC-CCCHHHHHHHHHH
Q ss_conf 9996037684577877536888513---87414-78860125651799840455113444123312-5789999999999
Q gi|254781120|r 198 KKSLSIASDSMGLSFSKRRITLSTS---GFVPN-IARVGEEIGVMLAISLHAVSNDLRNILVPINR-KYPLEMLIDACRH 272 (384)
Q Consensus 198 ~~ai~~l~~~~g~~~~~r~ITvST~---Gi~p~-I~~la~~~~~~LAiSLha~~~~~R~~lmPi~~-~~~l~~l~~a~~~ 272 (384)
+++|+-.+-. . .|-|=|. |-.+. |+.+.+.-|- .-+-|=|+=.+|-|.-+ +-.-+.-++.|++
T Consensus 121 I~~Ir~~~P~----~---~iEvLiPDF~G~~~~~l~~v~~a~Pd-----V~nHNiETV~rL~~~VRp~a~Y~rSL~vL~~ 188 (289)
T PRK05481 121 IRAIRELSPG----T---TIEVLIPDFRGRKDAALEIVVAAPPD-----VFNHNLETVPRLYKRVRPGADYERSLELLKR 188 (289)
T ss_pred HHHHHHHCCC----C---EEEECCCCCCCCHHHHHHHHHHCCHH-----HHHCCHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 9999855999----7---79970721146999999999856717-----7643513104436233882338999999999
Q ss_pred HHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEE-ECC-CC----CCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 98625894599999872699988899999999832545316675-127-78----8798868898999999999998798
Q gi|254781120|r 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLI-PFN-PW----PGCEYLCSDQKDIVTFSECIKRSGY 346 (384)
Q Consensus 273 y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~~vNLI-p~N-~~----~~~~~~~~~~~~i~~F~~~L~~~Gi 346 (384)
.-+... .-+|=- -++=|+--+.++..+..+=|+...|.+=-| .|= |. |-..|-. .+.-+.|.++-.+.|+
T Consensus 189 ~k~~~p-~~~TKS-giMvGLGEt~eEv~~~~~DL~~~gvdilTiGQYL~Ps~~hlpV~ryv~--P~eF~~~~~~a~~~GF 264 (289)
T PRK05481 189 AKELDP-GIPTKS-GLMVGLGETDEEVLEVMDDLRAHGVDILTIGQYLQPSRKHLPVERYVT--PEEFDEYKEIALELGF 264 (289)
T ss_pred HHHHCC-CCCEEE-EEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEECCC--HHHHHHHHHHHHHCCC
T ss_conf 997489-982413-567755788999999999999819989983403588866688433569--8999999999997599
Q ss_pred EE
Q ss_conf 78
Q gi|254781120|r 347 SS 348 (384)
Q Consensus 347 ~~ 348 (384)
..
T Consensus 265 ~~ 266 (289)
T PRK05481 265 LH 266 (289)
T ss_pred CE
T ss_conf 67
No 177
>COG3460 Uncharacterized enzyme of phenylacetate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.19 E-value=48 Score=13.96 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=14.5
Q ss_pred CCCCCCEEEEEECCCCHH
Q ss_conf 125651799840455113
Q gi|254781120|r 233 EEIGVMLAISLHAVSNDL 250 (384)
Q Consensus 233 ~~~~~~LAiSLha~~~~~ 250 (384)
+.++..+..||||||.|.
T Consensus 21 ~~~p~q~vgSlhA~d~em 38 (117)
T COG3460 21 QGLPHQHVGSLHAPDEEM 38 (117)
T ss_pred CCCCCCEEEEEECCCHHH
T ss_conf 789601243021699899
No 178
>PRK09569 type I citrate synthase; Reviewed
Probab=21.15 E-value=27 Score=15.89 Aligned_cols=73 Identities=18% Similarity=0.172 Sum_probs=34.2
Q ss_pred CCEEEEE-CCCCHHHHHHHHHHHHHCCCCCCCC-CCCCC--EEEEEECCCCHHHHHHHCCCCCCEEEEEEC-CCCHHHHH
Q ss_conf 1014410-1454454289999996037684577-87753--688851387414788601256517998404-55113444
Q gi|254781120|r 179 ISNIVMM-GMGEPLCNFDNVKKSLSIASDSMGL-SFSKR--RITLSTSGFVPNIARVGEEIGVMLAISLHA-VSNDLRNI 253 (384)
Q Consensus 179 i~NiVfM-GmGEPl~N~d~v~~ai~~l~~~~g~-~~~~r--~ITvST~Gi~p~I~~la~~~~~~LAiSLha-~~~~~R~~ 253 (384)
..|...| |..+| ++.+++..-+|+.+++. |-|.- |++-|| ..+----++- -=..|+=.||. +|++.=+.
T Consensus 207 a~NFl~Ml~~~~~---~~~~~rl~liLHADHE~gN~STft~rvv~St--lsD~y~siaa-gi~aL~GPLHGgANq~vl~~ 280 (437)
T PRK09569 207 GANFAHMIGQPKP---YDDVARMYFILHSDHESGNVSAHTTHLVASA--LSDAYYAYSA-GLNGLAGPLHGLANQEVLGW 280 (437)
T ss_pred HHHHHHHCCCCCC---HHHHHHHHHHHHHCCCCCCCHHHHHHHHHCC--CCCHHHHHHH-HHHHHCCCCCCCCHHHHHHH
T ss_conf 9999998789986---5999999998972136787117888877515--8768999999-99983587656705899999
Q ss_pred HCCC
Q ss_conf 1233
Q gi|254781120|r 254 LVPI 257 (384)
Q Consensus 254 lmPi 257 (384)
|+-+
T Consensus 281 l~~~ 284 (437)
T PRK09569 281 IQQF 284 (437)
T ss_pred HHHH
T ss_conf 9999
No 179
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=21.10 E-value=58 Score=13.37 Aligned_cols=90 Identities=12% Similarity=0.177 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEEEEC-------CCCCCHHHHHHHHHHHCCCCCEEEEEE---CCCCCCCCCCCCCHHHH
Q ss_conf 99999999986258945999998726-------999888999999998325453166751---27788798868898999
Q gi|254781120|r 265 MLIDACRHYPGLSNARRITFEYVMLK-------GINDSPRDALNLIKILKGIPAKINLIP---FNPWPGCEYLCSDQKDI 334 (384)
Q Consensus 265 ~l~~a~~~y~~~~~~rrit~EYvli~-------gvNDs~e~a~~L~~ll~~~~~~vNLIp---~N~~~~~~~~~~~~~~i 334 (384)
.+-+..++|.+++.+..-.+||...+ +..-....+++-++.++.-..||.||. |.|+|.
T Consensus 241 ~i~~~~~e~~~~~gr~y~~~e~y~~eDAe~viV~~GS~~~~~~~AVd~lR~~G~KVGlir~r~~rPFP~----------- 309 (407)
T PRK09622 241 VIEEVFNDFAKLTGRQYHLVETYQMEDAEVAIFALGTTVESAIVAAKEMRKKGIKAGVATIRVLRPFPY----------- 309 (407)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCH-----------
T ss_conf 999999999998587556078717998779999807868999999999997498675899998589999-----------
Q ss_pred HHHHHHHHHCCCEEEECCCCCCCCCCCCCCCHHH
Q ss_conf 9999999987987854158777100112002102
Q gi|254781120|r 335 VTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 (384)
Q Consensus 335 ~~F~~~L~~~Gi~~tiR~srG~DI~aACGQL~~~ 368 (384)
++|.+.|+...-.+.+-++.. .|+.|.|...
T Consensus 310 ~~l~~al~~~K~V~Vldr~~~---~g~~g~l~~~ 340 (407)
T PRK09622 310 ERLGQALKNLKALAILDRSSP---AGAMGALFNE 340 (407)
T ss_pred HHHHHHHCCCCEEEEEECCCC---CCCCCHHHHH
T ss_conf 999998757998999978899---8887737999
No 180
>pfam07427 consensus
Probab=21.03 E-value=58 Score=13.36 Aligned_cols=37 Identities=30% Similarity=0.202 Sum_probs=30.0
Q ss_pred CCEEEECCCCCCCCCEEEEEEECCCCCCCEEEEEECC
Q ss_conf 3037752477778981554430234677338988406
Q gi|254781120|r 86 RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 (384)
Q Consensus 86 ~K~L~~l~d~~~~dg~~IEsVlip~~~r~T~CvSSQv 122 (384)
.+|-+.+.+-.+++|...+.+.||.+++.|+=+++.+
T Consensus 37 v~y~v~mNgv~ig~G~~~~~~~i~~~s~~tv~v~t~i 73 (126)
T pfam07427 37 LKADIYMNGVKIGEGRILKGATIQPKSRGTVKVSLTL 73 (126)
T ss_pred EEEEEEECCEEEEEEEECCCEEECCCCEEEEEEEEEE
T ss_conf 2899999999986468602189789975999999998
No 181
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR; InterPro: IPR010242 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] . FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins , . It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly . The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA . SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA , acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins . Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen . This entry describes IscR, an iron-sulphur binding transcription factor of the ISC iron-sulphur cluster assembly system.; GO: 0003690 double-stranded DNA binding, 0003700 transcription factor activity, 0006355 regulation of transcription DNA-dependent.
Probab=20.93 E-value=58 Score=13.35 Aligned_cols=36 Identities=17% Similarity=0.191 Sum_probs=25.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCC
Q ss_conf 988688989999999999987987854158777100
Q gi|254781120|r 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 (384)
Q Consensus 324 ~~~~~~~~~~i~~F~~~L~~~Gi~~tiR~srG~DI~ 359 (384)
|.=+.=|..++|+....|+++|+..+||=+.|-=+.
T Consensus 32 S~RQ~ISLSYLEQLFaKLRk~gLV~SvRGPGGGY~L 67 (140)
T TIGR02010 32 SERQNISLSYLEQLFAKLRKAGLVKSVRGPGGGYQL 67 (140)
T ss_pred HHHCCCCHHHHHHHHHHHCHHCCCEECCCCCCCCCC
T ss_conf 442161356798998863210131210177741312
No 182
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase; InterPro: IPR010121 Pyruvate phosphate dikinase (PPDK, or pyruvate orthophosphate dikinase) is found in plants, bacteria and archaea. The amino acid sequence identity between bacterial and plant enzymes is high, and they are similar in sequence to other PEP-utilizing enzymes. PPDK catalyses the reversible conversion of ATP and pyruvate to AMP and PEP (phosphoenolpyruvate). In bacteria such as Clostridium symbiosum, PPDK uses Mg2+ and NH4+ ions as cofactors . The enzyme has three domains: the N- and C-terminal domains each have an active site centre that catalyses a different step in the reaction, and the middle domain has a carrier histidine residue that moves between the two active centres. In plants, PPDK is localised predominantly in chloroplast stroma where it catalyses the rate-limiting step in the C4 photosynthetic pathway, namely the synthesis of PEP, which acts as the primary CO2 acceptor in C4 photosynthesis . PPDK activity in C4 plants is strictly regulated by light, its activity decreasing in darkness. This response is regulated by phosphorylation and dephosphorylation of the enzyme using ADP; such regulation is not seen in the bacterial form of the enzyme. PPDK is also found in C3 plants, but it is not known to have a photosynthetic role .; GO: 0050242 pyruvate phosphate dikinase activity.
Probab=20.81 E-value=59 Score=13.33 Aligned_cols=58 Identities=16% Similarity=0.204 Sum_probs=31.6
Q ss_pred HHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHCC---CCCCEEEEEECCCCHHHHHHC
Q ss_conf 9999996037684577877536888513874147886012---565179984045511344412
Q gi|254781120|r 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE---IGVMLAISLHAVSNDLRNILV 255 (384)
Q Consensus 195 d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~I~~la~~---~~~~LAiSLha~~~~~R~~lm 255 (384)
|++++|++.|.+ |+=..|++.|=+-+=-|.=-+.|-+ -++.|+=+=|==.++.|-.+|
T Consensus 553 delvravd~im~---WAD~~r~LkVRANAdTP~Da~~A~~fGAeGIGLCRTEHMFF~~~Ri~~v 613 (920)
T TIGR01828 553 DELVRAVDTIMS---WADKIRKLKVRANADTPEDAKTARKFGAEGIGLCRTEHMFFDEERIPAV 613 (920)
T ss_pred HHHHHHHHHHHH---HHHHHCCCEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 789999999999---8633311514405787789999997174740421001133720368999
No 183
>TIGR00087 surE 5'/3'-nucleotidase SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response . E. coli cells with mutations in the surE gene survive poorly in stationary phase . The structure of SurE homologues have been determined from Thermotoga maritima and the archaea Pyrobaculum aerophilum . The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity.
Probab=20.74 E-value=59 Score=13.32 Aligned_cols=80 Identities=15% Similarity=0.177 Sum_probs=45.6
Q ss_pred EEECCCCHHHH----HHHHHHHH------HCCCC--CCCCCCCCCEEEEE-ECCCCHHHHHHHCCC-CCCEEEEEECCCC
Q ss_conf 41014544542----89999996------03768--45778775368885-138741478860125-6517998404551
Q gi|254781120|r 183 VMMGMGEPLCN----FDNVKKSL------SIASD--SMGLSFSKRRITLS-TSGFVPNIARVGEEI-GVMLAISLHAVSN 248 (384)
Q Consensus 183 VfMGmGEPl~N----~d~v~~ai------~~l~~--~~g~~~~~r~ITvS-T~Gi~p~I~~la~~~-~~~LAiSLha~~~ 248 (384)
++.=+|=|=+= ...+++-+ ++..+ ..|-|+|+.-+|.| |+| +..+-+-.- -..+||||-..++
T Consensus 105 ~~~~dGTP~DcV~lG~~~~~~~~~nnitpDLV~SGiN~G~NlG~~~~~~SGTvg---AA~E~~~~Gn~paIA~S~~~~~~ 181 (326)
T TIGR00087 105 IYAVDGTPTDCVILGIHELMPEVHNNITPDLVISGINLGENLGAEDVTYSGTVG---AAMEAAIHGNVPAIAISLQIFNT 181 (326)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHCCHHH---HHHHHHHHCCCCCEEEECCCCCC
T ss_conf 899718868999999998704312344532588066688867733331025389---98886651786404641000232
Q ss_pred HHHHHHCCCCCCCCHHH
Q ss_conf 13444123312578999
Q gi|254781120|r 249 DLRNILVPINRKYPLEM 265 (384)
Q Consensus 249 ~~R~~lmPi~~~~~l~~ 265 (384)
.+...=-+....|.+..
T Consensus 182 ~~~~~~~~~~~~f~~Aa 198 (326)
T TIGR00087 182 DVKFKENSSPLDFEIAA 198 (326)
T ss_pred CCCCCCCCCCCCHHHHH
T ss_conf 00003677643766899
No 184
>pfam05988 DUF899 Bacterial protein of unknown function (DUF899). This family consists of several uncharacterized bacterial proteins of unknown function.
Probab=20.69 E-value=25 Score=16.11 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=15.3
Q ss_pred CCCCHHCCCCCCCCCCHHHCCCCH
Q ss_conf 065100486132244111027898
Q gi|254781120|r 121 QVGCSLTCSFCYTGTQKLVRNLTA 144 (384)
Q Consensus 121 QvGC~m~C~FCaTg~~G~~RNLt~ 144 (384)
.-||+ +|+|++.+-.|....|.+
T Consensus 82 ~~~C~-gCS~~~D~~~g~l~hL~~ 104 (211)
T pfam05988 82 EAGCP-GCSFLADHFDGALAHLAA 104 (211)
T ss_pred CCCCC-CCHHHHHCCCCHHHHHHH
T ss_conf 89999-722245275613778872
No 185
>pfam04848 Pox_A22 Poxvirus A22 protein.
Probab=20.69 E-value=59 Score=13.31 Aligned_cols=77 Identities=17% Similarity=0.257 Sum_probs=53.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCC--CCEEEEEECCCC-CCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCC-CCCCCC
Q ss_conf 987269998889999999983254--531667512778-8798868898999999999998798785415877-710011
Q gi|254781120|r 286 YVMLKGINDSPRDALNLIKILKGI--PAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG-LDILAA 361 (384)
Q Consensus 286 Yvli~gvNDs~e~a~~L~~ll~~~--~~~vNLIp~N~~-~~~~~~~~~~~~i~~F~~~L~~~Gi~~tiR~srG-~DI~aA 361 (384)
.|||+---..--.++ .+.+++|+ ..+..+|-++|. .|..|+.-....|+.|.+.+...|+...+.+++- .|+.-+
T Consensus 54 ~VLiEkQp~r~~~~k-~i~fi~g~fy~~~~kvi~~~p~~~g~~Y~~RKk~SI~~~~~~l~~~~~~~~~~k~kKkDDlADs 132 (143)
T pfam04848 54 VVLLERQGRRSPNIK-FIYFIKGFLYNKQTKVICVNPVMNGGSYRDRKKRSVNIFLNWMSVFGINDILPKYKKLDDVADS 132 (143)
T ss_pred EEEEEECCCCCCCEE-EHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf 899960799998476-4133565821677757870843457668888899999999999975993212111221358999
Q ss_pred CC
Q ss_conf 20
Q gi|254781120|r 362 CG 363 (384)
Q Consensus 362 CG 363 (384)
+=
T Consensus 133 ~~ 134 (143)
T pfam04848 133 FN 134 (143)
T ss_pred HH
T ss_conf 99
No 186
>pfam00062 Lys C-type lysozyme/alpha-lactalbumin family. Alpha-lactalbumin is the regulatory subunit of lactose synthase, changing the substrate specificity of galactosyltransferase from N-acetylglucosamine to glucose. C-type lysozymes are secreted bacteriolytic enzymes that cleave the peptidoglycan of bacterial cell walls. Structure is a multi-domain, mixed alpha and beta fold, containing four conserved disulfide bonds.
Probab=20.43 E-value=60 Score=13.27 Aligned_cols=28 Identities=25% Similarity=0.526 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99899999999869985457755899999998
Q gi|254781120|r 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIY 43 (384)
Q Consensus 12 ls~~EL~~~l~~~G~p~~~~~fRa~QI~~wiy 43 (384)
++.=||...|...|+|. |+..||-+||-
T Consensus 3 ~~RCeLAr~L~~~g~~~----~~~~~l~~WvC 30 (125)
T pfam00062 3 FTRCELARELKRLGMDG----YRGISLANWVC 30 (125)
T ss_pred CCHHHHHHHHHHCCCCC----CCCCCHHHHHE
T ss_conf 41839999999849985----46560311010
No 187
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=20.35 E-value=53 Score=13.64 Aligned_cols=26 Identities=27% Similarity=0.694 Sum_probs=19.2
Q ss_pred EEEEECCCCHHCCCCCCCCCCHHHCCC
Q ss_conf 898840651004861322441110278
Q gi|254781120|r 116 LCVSSQVGCSLTCSFCYTGTQKLVRNL 142 (384)
Q Consensus 116 ~CvSSQvGC~m~C~FCaTg~~G~~RNL 142 (384)
+.++..++|. .|.+|.+|...+-.+.
T Consensus 80 V~v~~~~~Cg-~C~~C~~G~~~~C~~~ 105 (349)
T TIGR03201 80 VIVPAVIPCG-ECELCKTGRGTICRAQ 105 (349)
T ss_pred EEECCCCCCC-CHHHCCCCCCCCCCCC
T ss_conf 9994411578-7042048885533455
No 188
>PRK06620 hypothetical protein; Validated
Probab=20.16 E-value=53 Score=13.64 Aligned_cols=49 Identities=27% Similarity=0.485 Sum_probs=29.2
Q ss_pred CCCCEEEEEECCCCHHHHHHCC---------------------CCCCC-CHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 5651799840455113444123---------------------31257-89999999999986258945999
Q gi|254781120|r 235 IGVMLAISLHAVSNDLRNILVP---------------------INRKY-PLEMLIDACRHYPGLSNARRITF 284 (384)
Q Consensus 235 ~~~~LAiSLha~~~~~R~~lmP---------------------i~~~~-~l~~l~~a~~~y~~~~~~rrit~ 284 (384)
+.-.+.+.++.|+|+++..+|= +.|.| .+..+++.++.+. ...+|+||+
T Consensus 136 l~~~~~~~i~~PdD~l~~~ll~k~~~~r~i~i~~~vi~yl~~ri~Rs~~~l~~~v~~ld~~s-l~~kr~Iti 206 (214)
T PRK06620 136 IKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEILENINYFA-LISKRKITI 206 (214)
T ss_pred HHCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHCCCCCCH
T ss_conf 85464433269898999999999999869988755999999985178999999999999999-983999889
Done!