HHsearch alignment for GI: 254781120 and conserved domain: pfam04055
>pfam04055 Radical_SAM Radical SAM superfamily. Radical SAM proteins catalyse diverse reactions, including unusual methylations, isomerisation, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation.
Probab=98.86 E-value=1.5e-07 Score=76.98 Aligned_cols=158 Identities=22% Similarity=0.285 Sum_probs=109.4
Q ss_pred EECCCCHHCCCCCCCCC---CHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHH
Q ss_conf 84065100486132244---111027898999999999999722203444434344454586110144101454454289
Q gi|254781120|r 119 SSQVGCSLTCSFCYTGT---QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195 (384)
Q Consensus 119 SSQvGC~m~C~FCaTg~---~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl~N~d 195 (384)
T Consensus 2 ~~~~gC~~~C~fC~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------------------~~~-~~i~~~gg~p~~~~~ 60 (165)
T pfam04055 2 IITPGCNLRCTYCAFPSIRARGKGRELSPEEILEEAKELAR--------------------LGV-EVVILTGGEPLLLPD 60 (165)
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH--------------------CCC-EEEEEECCCCCCCHH
T ss_conf 88937487796899978578886522699999999988874--------------------598-599993167666527
Q ss_pred HHHHHHHCCCCCCCCCCCCCEEEEEECCCCHH---HHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 99999603768457787753688851387414---788601256517998404551134441233125789999999999
Q gi|254781120|r 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPN---IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 (384)
Q Consensus 196 ~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~---I~~la~~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~ 272 (384)
T Consensus 61 ~~~~~~~~~~~~~---~~~~~~~~~t~~~~~~~~~~~~l~~~g~~~i~~~ie~~~~~~~~~~---~~~~~~~~~~~~i~~ 134 (165)
T pfam04055 61 LVELLERLLKLEE---LEGIRITLETNGTLLDEELLEELKEAGLDRVSISLQSGDDEVLKII---NRGHTFEEVLEALEL 134 (165)
T ss_pred HHHHHHHHHHHCC---CCCEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH---CCCCCHHHHHHHHHH
T ss_conf 7777888765314---6764899998514331045689997198522246355999999985---799998999999999
Q ss_pred HHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 9862589459999987269998889999999983
Q gi|254781120|r 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 (384)
Q Consensus 273 y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll 306 (384)
T Consensus 135 ~~~-~-gi~~-~~~~i~~~~~e~~~~~~~~~~~i 165 (165)
T pfam04055 135 LRE-A-GIPV-VVDNIVGLPGENDEDLEETLELL 165 (165)
T ss_pred HHH-C-CCCE-EEEEEEECCCCCHHHHHHHHHHC
T ss_conf 998-7-9978-89999979999999999996039