HHsearch alignment for GI: 254781120 and conserved domain: smart00729

>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=98.86  E-value=2.4e-07  Score=75.49  Aligned_cols=188  Identities=18%  Similarity=0.314  Sum_probs=120.3

Q ss_pred             EEECCCCHHCCCCCCCCCC-HHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHH-HH
Q ss_conf             8840651004861322441-110278989999999999997222034444343444545861101441014544542-89
Q gi|254781120|r  118 VSSQVGCSLTCSFCYTGTQ-KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN-FD  195 (384)
Q Consensus       118 vSSQvGC~m~C~FCaTg~~-G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVfMGmGEPl~N-~d  195 (384)
T Consensus         5 ~~~sRGC~~~C~fC~~~~~~~~~~~~~~~~i~~ei~~~~~~~~~---------------~-~~~~~~~~~~~~~~~~~~~   68 (216)
T smart00729        5 YIITRGCPRRCTFCSFPSARGKLRSRYLEALVREIELLAEKGEK---------------E-ILVGTVFIGGGTPTLLSPE   68 (216)
T ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC---------------C-CCCEEEEECCCCCCCCCHH
T ss_conf             99987819848429817588964575999999999999970897---------------6-5300110024689888999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCEEEEEEC-CCC-H-HHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf             999996037684577877536888513-874-1-4788601256517998404551134441233125789999999999
Q gi|254781120|r  196 NVKKSLSIASDSMGLSFSKRRITLSTS-GFV-P-NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH  272 (384)
Q Consensus       196 ~v~~ai~~l~~~~g~~~~~r~ITvST~-Gi~-p-~I~~la~~~~~~LAiSLha~~~~~R~~lmPi~~~~~l~~l~~a~~~  272 (384)
T Consensus        69 ~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~e~l~~l~~~g~~~v~~giEs~~~~~l~~---i~k~~~~~~~~~~i~~  144 (216)
T smart00729       69 QLEELLEAIREILGLA-DDVEITIETRPGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKA---INRGHTVEDVLEAVEK  144 (216)
T ss_pred             HHHHHHHHHHHHCCCC-CCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHH---HCCCCCHHHHHHHHHH
T ss_conf             9999999999851435-62699997060215899999999849986666735507899987---1799999999999999


Q ss_pred             HHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCC-EEEEEECCCCCCCCCC
Q ss_conf             986258945999998726999888999999998325453-1667512778879886
Q gi|254781120|r  273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEYL  327 (384)
Q Consensus       273 y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~-~vNLIp~N~~~~~~~~  327 (384)
T Consensus       145 ~~-~~g~~~~~~-~~i~GlP~et~e~~~~t~~~~~~~~~~~i~~~~~~p~pgT~~~  198 (216)
T smart00729      145 LR-EAGPIKVST-DLIVGLPGETEEDFEETLKLLKELGPDRVSIFPLSPRPGTPLA  198 (216)
T ss_pred             HH-HHCCCEEEE-EEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCEECCCCHHH
T ss_conf             99-858936877-5786799999999999999999469198998748756998466