HHsearch alignment of GI: 254781120 and MMDB domain: 2yx0_A_
>2yx0_A (A:) Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii}
Probab=99.88 E-value=2.2e-21 Score=178.86 Aligned_cols=307 Identities=12% Similarity=0.037 Sum_probs=232.9
Q ss_pred HHHHH-HHCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCEEEEEEECC------C
Q ss_conf 99999-8717999678334788999998620225787023465314544303775247777898155443023------4
Q gi|254781120|r 38 IWKWI-YVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP------E 110 (384)
Q Consensus 38 I~~wi-y~k~v~~f~~MtnLpk~lR~~L~e~~~i~~l~iv~~~~S~DGT~K~L~~l~d~~~~dg~~IEsVlip------~ 110 (384)
||+|+ +++++.+|++|++||+..++.|.+... .....|++.|++..+.+ ...++...+. .
T Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~~~~e~l~~~~~--------~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 67 (342)
T 2yx0_A 1 MMEMITIKPGKITVQANPNMPKEVAELFRKQHY--------EIVGRHSGVKLCHWLKK-----SLTEGRFCYKQKFYGIH 67 (342)
T ss_dssp ----------CCCCCBCCSSCHHHHHHHHHTTC--------EEEBTTEEECCCTTHHH-----HHHHCCCCHHHHHHCCC
T ss_pred CCCCEEECCCCCHHHHCCCCCHHHHHHHHHCCC--------EEEECCCCEEECHHHHH-----HHCCCCCCCCCCCCCCC
T ss_conf 965255334400353088999899999987798--------78715766677540398-----83779964550012634
Q ss_pred CCCCEEEEEECCCCHHCCCCCCCCC------CHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 6773389884065100486132244------1110278989999999999997222034444343444545861101441
Q gi|254781120|r 111 KSRGTLCVSSQVGCSLTCSFCYTGT------QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 (384)
Q Consensus 111 ~~r~T~CvSSQvGC~m~C~FCaTg~------~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~NiVf 184 (384)
..+..+++...-||+++|.||.... .+-.|..+..++++++..+.+...................+..+..+++
T Consensus 68 ~~~~~~~i~~t~gCn~~C~yC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (342)
T 2yx0_A 68 SHRCLQMTPVLAWCTHNCIFCWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKFEEAWNPTHAAI 147 (342)
T ss_dssp GGGEEEEESCSSCCSBCCTTCCCSSSSCSCSSCCSSCCCHHHHHHHHHHHHHHHHTTCC--CCSCHHHHHHHTSCCEEEE
T ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEE
T ss_conf 64448876841252777988999887777755545557989999999999999876532675302677775148757999
Q ss_pred ECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHH---CCCCCCEEEEEECCCCHHHHHHCCCCCCC
Q ss_conf 014544542899999960376845778775368885138741478860---12565179984045511344412331257
Q gi|254781120|r 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG---EEIGVMLAISLHAVSNDLRNILVPINRKY 261 (384)
Q Consensus 185 MGmGEPl~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~I~~la---~~~~~~LAiSLha~~~~~R~~lmPi~~~~ 261 (384)
.+.|||+++ ..+...++.+.. .| .++.+.|.|......... ......+.+|+.+++++.+..+.....+.
T Consensus 148 ~~~gep~~~-~~~~~~~~~~~~-~~-----~~~~~~tn~~~~~~~~~~~~~~~~~~~v~isl~~~~~~~~~~~~~~~~~~ 220 (342)
T 2yx0_A 148 SLSGEPMLY-PYMGDLVEEFHK-RG-----FTTFIVTNGTIPERLEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMIPD 220 (342)
T ss_dssp CSSSCGGGS-TTHHHHHHHHHH-TT-----CEEEEEECSCCHHHHHHHHHTTCCCSEEEEEECCSSHHHHHHHHCBSSSC
T ss_pred ECCCCCCCC-HHHHHHHHHHHH-CC-----CEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCCCCCC
T ss_conf 468775454-409999999986-39-----72899548877258999886425775799627899989999871877777
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCC-EEEEEECCCCCCCC-----CCCCCHHHHH
Q ss_conf 89999999999986258945999998726999888999999998325453-16675127788798-----8688989999
Q gi|254781120|r 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCE-----YLCSDQKDIV 335 (384)
Q Consensus 262 ~l~~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~~~-~vNLIp~N~~~~~~-----~~~~~~~~i~ 335 (384)
++++++++++.+. .. +-++.+..+++.|.||. +..++++++..+.+ .|++.||.|.++.+ ..+++.+.+.
T Consensus 221 ~~~~~~~~i~~l~-~~-g~~v~~~~~~~~g~n~~--~~~~~~~~~~~lg~~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~ 296 (342)
T 2yx0_A 221 GWERILRFLELMR-DL-PTRTVVRLTLVKGENMH--SPEKYAKLILKARPMFVEAKAYMFVGYSRNRLTINNMPSHQDIR 296 (342)
T ss_dssp HHHHHHHHHHHHT-TC-SSEEEEEEEECTTTTCC--CHHHHHHHHHHHCCSEEEEEECC------CCCCGGGSCCHHHHH
T ss_pred HHHHHHHHHHHHH-HC-CCCEEEEEEEECCCCHH--HHHHHHHHHHHCCCCEEEEECCEECCCCCHHCCCCCCCCHHHHH
T ss_conf 8999999999999-66-99889999986898878--89999999987499889986525568860112401499889999
Q ss_pred HHHHHHHHCCCEEEECCCCCCCCCCCCCCCHHH
Q ss_conf 999999987987854158777100112002102
Q gi|254781120|r 336 TFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 (384)
Q Consensus 336 ~F~~~L~~~Gi~~tiR~srG~DI~aACGQL~~~ 368 (384)
+|.+.+.+.+....++...|.++.++|++.+-.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (342)
T 2yx0_A 297 EFAEALVKHLPGYHIEDEYEPSRVVLIMRDDVD 329 (342)
T ss_dssp HHHHHHHTTCTTEEEEEEEGGGTEEEEEETTSE
T ss_pred HHHHHHHHHCCCCEEECCCCCCEEEEEEECCCC
T ss_conf 999999987269664226676518997741415