HHsearch results for GI: 254781120 and protein with PDBid: 2yx0_A
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii}
Probab=99.39 E-value=2.5e-11 Score=103.30 Aligned_cols=273 Identities=15% Similarity=0.149 Sum_probs=169.4
Q ss_pred HCCCCCHHHHCCCCHHHHHHHHHC-CCCC-CCCEEE----EEEC--CCC-CCCEEEECCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 717999678334788999998620-2257-870234----6531--454-430377524777789815544302346773
Q gi|254781120|r 44 VRGIRDFQGMSDISQEVRHLLNQH-FSII-YPEIVD----EKIS--CDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRG 114 (384)
Q Consensus 44 ~k~v~~f~~MtnLpk~lR~~L~e~-~~i~-~l~iv~----~~~S--~DG-T~K~L~~l~d~~~~dg~~IEsVlip~~~r~ 114 (384)
+-+....+.++++|+++++.|..+ |.+- .-.-|+ ...| ..| -.|.-|= | |+|= |-
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~l~k~~y~~~g~hs~vk~c~w~~~~~~~~~~cyk~~fy--------g--i~sh------~c 71 (342)
T 2yx0_A 8 KPGKITVQANPNMPKEVAELFRKQHYEIVGRHSGVKLCHWLKKSLTEGRFCYKQKFY--------G--IHSH------RC 71 (342)
T ss_dssp ---CCCCCBCCSSCHHHHHHHHHTTCEEEBTTEEECCCTTHHHHHHHCCCCHHHHHH--------C--CCGG------GE
T ss_pred CCCCCHHHCCCCCCHHHHHHHHHCCCEEEECCCCEEECHHHHHHHCCCCCCCCEEEE--------C--CCCC------CE
T ss_conf 234011312889998999999867887973354525533129885579965314330--------6--3320------45
Q ss_pred EEEEEECCCCHHCCCCCCCC---CCHHH---CCCCHHHHHHHHHHHHHH-HHHCCCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 38988406510048613224---41110---278989999999999997-222034444343444545861101441014
Q gi|254781120|r 115 TLCVSSQVGCSLTCSFCYTG---TQKLV---RNLTAEEILLQVLLARSL-LGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 (384)
Q Consensus 115 T~CvSSQvGC~m~C~FCaTg---~~G~~---RNLt~~EIv~Qv~~~~~~-l~~~~~~~~~~~~~~~~~~~~i~NiVfMGm 187 (384)
.-+-.|-..|.+.|.||... ..+.. .--.+.+|+++++-..+. +....+......... .....+++|+|-|-
T Consensus 72 ~q~tPsl~~CNlrCvfC~r~~~~~~~~~~~~~~d~pe~Ivee~i~~~~~~i~~~~g~~~~~~e~~-~Ea~~~~hvais~~ 150 (342)
T 2yx0_A 72 LQMTPVLAWCTHNCIFCWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKF-EEAWNPTHAAISLS 150 (342)
T ss_dssp EEEESCSSCCSBCCTTCCCSSSSCSCSSCCSSCCCHHHHHHHHHHHHHHHHTTCC--CCSCHHHH-HHHTSCCEEEECSS
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH-HHHCCCCEEEEECC
T ss_conf 87430415202589888998777777665444479899999999999998876426763025666-65248767999578
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHH-HHHHHC-C-CCCCEEEEEECCCCHHHHHHCCCCCCCCHH
Q ss_conf 5445428999999603768457787753688851387414-788601-2-565179984045511344412331257899
Q gi|254781120|r 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN-IARVGE-E-IGVMLAISLHAVSNDLRNILVPINRKYPLE 264 (384)
Q Consensus 188 GEPl~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~-I~~la~-~-~~~~LAiSLha~~~~~R~~lmPi~~~~~l~ 264 (384)
|||+++ +.+...++.+.. .|+ ++.+.|.|..|. +.++.. . ....+.|||.|++.+.-+++.-....-.++
T Consensus 151 GEPll~-p~l~eli~~~~~-~gi-----~~~l~TNGtl~~~~~~l~~~~~~~~~l~vSLDa~~~e~~~ki~r~~~~~~~e 223 (342)
T 2yx0_A 151 GEPMLY-PYMGDLVEEFHK-RGF-----TTFIVTNGTIPERLEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMIPDGWE 223 (342)
T ss_dssp SCGGGS-TTHHHHHHHHHH-TTC-----EEEEEECSCCHHHHHHHHHTTCCCSEEEEEECCSSHHHHHHHHCBSSSCHHH
T ss_pred CCCCCC-HHHHHHHHHHHH-CCC-----EEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCCCHHH
T ss_conf 775345-559999999986-396-----4999658866117999998747886799835789989999873766767799
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCC-CCEEEEEECCCCCCCC--C---CCCCHHHHHHHH
Q ss_conf 999999999862589459999987269998889999999983254-5316675127788798--8---688989999999
Q gi|254781120|r 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI-PAKINLIPFNPWPGCE--Y---LCSDQKDIVTFS 338 (384)
Q Consensus 265 ~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~-~~~vNLIp~N~~~~~~--~---~~~~~~~i~~F~ 338 (384)
.++++++... .. +.++.+.-+|++|+||. +..++++|++.. |..|-+-+|..+..+. . --|+.+.+.+|.
T Consensus 224 rvl~~L~~L~-~~-g~~~vir~tlv~g~N~~--ei~~~a~li~~~~pdfie~k~y~~~G~s~~~L~~~~mP~~eEv~~fa 299 (342)
T 2yx0_A 224 RILRFLELMR-DL-PTRTVVRLTLVKGENMH--SPEKYAKLILKARPMFVEAKAYMFVGYSRNRLTINNMPSHQDIREFA 299 (342)
T ss_dssp HHHHHHHHHT-TC-SSEEEEEEEECTTTTCC--CHHHHHHHHHHHCCSEEEEEECC------CCCCGGGSCCHHHHHHHH
T ss_pred HHHHHHHHHH-HC-CCCEEEEEEEECCCCHH--HHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHH
T ss_conf 9999999999-66-99889999996898766--69999999986599989996038705786546401399889999999
Q ss_pred HHHHHC
Q ss_conf 999987
Q gi|254781120|r 339 ECIKRS 344 (384)
Q Consensus 339 ~~L~~~ 344 (384)
..|...
T Consensus 300 ~~l~~~ 305 (342)
T 2yx0_A 300 EALVKH 305 (342)
T ss_dssp HHHHTT
T ss_pred HHHHHH
T ss_conf 999986