HHsearch results for GI: 254781120 and protein with PDBid: 2yx0_A

>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii}
Probab=99.39  E-value=2.5e-11  Score=103.30  Aligned_cols=273  Identities=15%  Similarity=0.149  Sum_probs=169.4

Q ss_pred             HCCCCCHHHHCCCCHHHHHHHHHC-CCCC-CCCEEE----EEEC--CCC-CCCEEEECCCCCCCCCEEEEEEECCCCCCC
Q ss_conf             717999678334788999998620-2257-870234----6531--454-430377524777789815544302346773
Q gi|254781120|r   44 VRGIRDFQGMSDISQEVRHLLNQH-FSII-YPEIVD----EKIS--CDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRG  114 (384)
Q Consensus        44 ~k~v~~f~~MtnLpk~lR~~L~e~-~~i~-~l~iv~----~~~S--~DG-T~K~L~~l~d~~~~dg~~IEsVlip~~~r~  114 (384)
                      +-+....+.++++|+++++.|..+ |.+- .-.-|+    ...|  ..| -.|.-|=        |  |+|=      |-
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~l~k~~y~~~g~hs~vk~c~w~~~~~~~~~~cyk~~fy--------g--i~sh------~c   71 (342)
T 2yx0_A            8 KPGKITVQANPNMPKEVAELFRKQHYEIVGRHSGVKLCHWLKKSLTEGRFCYKQKFY--------G--IHSH------RC   71 (342)
T ss_dssp             ---CCCCCBCCSSCHHHHHHHHHTTCEEEBTTEEECCCTTHHHHHHHCCCCHHHHHH--------C--CCGG------GE
T ss_pred             CCCCCHHHCCCCCCHHHHHHHHHCCCEEEECCCCEEECHHHHHHHCCCCCCCCEEEE--------C--CCCC------CE
T ss_conf             234011312889998999999867887973354525533129885579965314330--------6--3320------45


Q ss_pred             EEEEEECCCCHHCCCCCCCC---CCHHH---CCCCHHHHHHHHHHHHHH-HHHCCCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf             38988406510048613224---41110---278989999999999997-222034444343444545861101441014
Q gi|254781120|r  115 TLCVSSQVGCSLTCSFCYTG---TQKLV---RNLTAEEILLQVLLARSL-LGDFPGCEDIEGMVIPSVGRKISNIVMMGM  187 (384)
Q Consensus       115 T~CvSSQvGC~m~C~FCaTg---~~G~~---RNLt~~EIv~Qv~~~~~~-l~~~~~~~~~~~~~~~~~~~~i~NiVfMGm  187 (384)
                      .-+-.|-..|.+.|.||...   ..+..   .--.+.+|+++++-..+. +....+......... .....+++|+|-|-
T Consensus        72 ~q~tPsl~~CNlrCvfC~r~~~~~~~~~~~~~~d~pe~Ivee~i~~~~~~i~~~~g~~~~~~e~~-~Ea~~~~hvais~~  150 (342)
T 2yx0_A           72 LQMTPVLAWCTHNCIFCWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKF-EEAWNPTHAAISLS  150 (342)
T ss_dssp             EEEESCSSCCSBCCTTCCCSSSSCSCSSCCSSCCCHHHHHHHHHHHHHHHHTTCC--CCSCHHHH-HHHTSCCEEEECSS
T ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH-HHHCCCCEEEEECC
T ss_conf             87430415202589888998777777665444479899999999999998876426763025666-65248767999578


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHH-HHHHHC-C-CCCCEEEEEECCCCHHHHHHCCCCCCCCHH
Q ss_conf             5445428999999603768457787753688851387414-788601-2-565179984045511344412331257899
Q gi|254781120|r  188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN-IARVGE-E-IGVMLAISLHAVSNDLRNILVPINRKYPLE  264 (384)
Q Consensus       188 GEPl~N~d~v~~ai~~l~~~~g~~~~~r~ITvST~Gi~p~-I~~la~-~-~~~~LAiSLha~~~~~R~~lmPi~~~~~l~  264 (384)
                      |||+++ +.+...++.+.. .|+     ++.+.|.|..|. +.++.. . ....+.|||.|++.+.-+++.-....-.++
T Consensus       151 GEPll~-p~l~eli~~~~~-~gi-----~~~l~TNGtl~~~~~~l~~~~~~~~~l~vSLDa~~~e~~~ki~r~~~~~~~e  223 (342)
T 2yx0_A          151 GEPMLY-PYMGDLVEEFHK-RGF-----TTFIVTNGTIPERLEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMIPDGWE  223 (342)
T ss_dssp             SCGGGS-TTHHHHHHHHHH-TTC-----EEEEEECSCCHHHHHHHHHTTCCCSEEEEEECCSSHHHHHHHHCBSSSCHHH
T ss_pred             CCCCCC-HHHHHHHHHHHH-CCC-----EEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCCCHHH
T ss_conf             775345-559999999986-396-----4999658866117999998747886799835789989999873766767799


Q ss_pred             HHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCC-CCEEEEEECCCCCCCC--C---CCCCHHHHHHHH
Q ss_conf             999999999862589459999987269998889999999983254-5316675127788798--8---688989999999
Q gi|254781120|r  265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI-PAKINLIPFNPWPGCE--Y---LCSDQKDIVTFS  338 (384)
Q Consensus       265 ~l~~a~~~y~~~~~~rrit~EYvli~gvNDs~e~a~~L~~ll~~~-~~~vNLIp~N~~~~~~--~---~~~~~~~i~~F~  338 (384)
                      .++++++... .. +.++.+.-+|++|+||.  +..++++|++.. |..|-+-+|..+..+.  .   --|+.+.+.+|.
T Consensus       224 rvl~~L~~L~-~~-g~~~vir~tlv~g~N~~--ei~~~a~li~~~~pdfie~k~y~~~G~s~~~L~~~~mP~~eEv~~fa  299 (342)
T 2yx0_A          224 RILRFLELMR-DL-PTRTVVRLTLVKGENMH--SPEKYAKLILKARPMFVEAKAYMFVGYSRNRLTINNMPSHQDIREFA  299 (342)
T ss_dssp             HHHHHHHHHT-TC-SSEEEEEEEECTTTTCC--CHHHHHHHHHHHCCSEEEEEECC------CCCCGGGSCCHHHHHHHH
T ss_pred             HHHHHHHHHH-HC-CCCEEEEEEEECCCCHH--HHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHH
T ss_conf             9999999999-66-99889999996898766--69999999986599989996038705786546401399889999999


Q ss_pred             HHHHHC
Q ss_conf             999987
Q gi|254781120|r  339 ECIKRS  344 (384)
Q Consensus       339 ~~L~~~  344 (384)
                      ..|...
T Consensus       300 ~~l~~~  305 (342)
T 2yx0_A          300 EALVKH  305 (342)
T ss_dssp             HHHHTT
T ss_pred             HHHHHH
T ss_conf             999986