BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254781120|ref|YP_003065533.1| radical SAM protein [Candidatus Liberibacter asiaticus str. psy62] (384 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254781120|ref|YP_003065533.1| radical SAM protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040797|gb|ACT57593.1| radical SAM protein [Candidatus Liberibacter asiaticus str. psy62] Length = 384 Score = 785 bits (2027), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/384 (100%), Positives = 384/384 (100%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV Sbjct: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS Sbjct: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS Sbjct: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA Sbjct: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL Sbjct: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA Sbjct: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 Query: 361 ACGQLKSLSKRIPKVPRQEMQITG 384 ACGQLKSLSKRIPKVPRQEMQITG Sbjct: 361 ACGQLKSLSKRIPKVPRQEMQITG 384 >gi|315122584|ref|YP_004063073.1| radical SAM protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495986|gb|ADR52585.1| radical SAM protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 389 Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/383 (85%), Positives = 359/383 (93%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN +KKESLIGM REE+EE+LLKIG+P VRMRTSQIWKWIYVRG+RDF MSDIS+E+ Sbjct: 1 MNIVKKESLIGMTREEIEESLLKIGVPPIQVRMRTSQIWKWIYVRGVRDFHFMSDISKEI 60 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R LL+QHF+I+YPEIVDEKISCDGTRKWLLRFPARCIG PV+IETVYIPEKSRGTLCVSS Sbjct: 61 RCLLDQHFAIVYPEIVDEKISCDGTRKWLLRFPARCIGDPVDIETVYIPEKSRGTLCVSS 120 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGCSLTCSFCYTGTQ+LVRNLT EEILLQ+LL RSLLGDFPGCED+ MV+P VGRK+S Sbjct: 121 QVGCSLTCSFCYTGTQQLVRNLTVEEILLQILLVRSLLGDFPGCEDMTEMVVPLVGRKVS 180 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 NIVMMGMGEPLCNFDNVKK+L IASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA Sbjct: 181 NIVMMGMGEPLCNFDNVKKALLIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ISLHAV NDLRNILVPIN+KYPLEML+DACR+YPGLSN+RRITFEYVMLKGINDSPRDA+ Sbjct: 241 ISLHAVKNDLRNILVPINKKYPLEMLMDACRNYPGLSNSRRITFEYVMLKGINDSPRDAI 300 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 LIK+LKGIPAKINLIPFNPWPGC+YLCSDQKDI FSE +K+SGYSSPIRTPRGLDI A Sbjct: 301 ELIKLLKGIPAKINLIPFNPWPGCDYLCSDQKDIEIFSEYVKKSGYSSPIRTPRGLDIFA 360 Query: 361 ACGQLKSLSKRIPKVPRQEMQIT 383 ACGQLKSLSKR+P++ ++ QIT Sbjct: 361 ACGQLKSLSKRVPRISSKQAQIT 383 >gi|227823764|ref|YP_002827737.1| putative radical SAM enzyme, Cfr family [Sinorhizobium fredii NGR234] gi|259491994|sp|C3MAJ1|RLMN_RHISN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|227342766|gb|ACP26984.1| putative radical SAM enzyme, Cfr family [Sinorhizobium fredii NGR234] Length = 411 Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust. Identities = 256/373 (68%), Positives = 315/373 (84%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K SLIG++RE++ + L++ G+P+R V+MR SQ+W W+YVRG+ DF MS++S+++R +L Sbjct: 25 EKPSLIGLLREDMAKLLVEKGVPERQVKMRVSQLWHWLYVRGVSDFDQMSNVSKDMREML 84 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +HF++ PEIV+E++S DGTRKWLLRFP R G PVEIETVYIPE+ RGTLC+SSQVGC Sbjct: 85 KEHFTVARPEIVEEQVSGDGTRKWLLRFPPRGAGRPVEIETVYIPEEGRGTLCISSQVGC 144 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +LTCSFC+TGTQKLVRNLTAEEIL Q+LLAR LGDFP + +G ++P+ GRKI+NIVM Sbjct: 145 TLTCSFCHTGTQKLVRNLTAEEILAQLLLARDRLGDFPERDTPQGAIVPAEGRKITNIVM 204 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNVK +L IASD GLS SKRRITLSTSG VP I R GEEIGVMLAISLH Sbjct: 205 MGMGEPLYNFDNVKTALLIASDGDGLSLSKRRITLSTSGIVPEIYRTGEEIGVMLAISLH 264 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV+++LR++LVPIN+KYPL+ L++ACR YPGLSNARRITFEYVMLK +NDS +DA L+K Sbjct: 265 AVNDELRDMLVPINKKYPLKELMEACRAYPGLSNARRITFEYVMLKDVNDSLQDAKELVK 324 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGIPAKINLIPFNPWPG Y CSD + I F++ I ++GY+SPIRTPRG DILAACGQ Sbjct: 325 LLKGIPAKINLIPFNPWPGTNYQCSDWEQIEAFADFINQAGYASPIRTPRGRDILAACGQ 384 Query: 365 LKSLSKRIPKVPR 377 LKS S+R+ KV R Sbjct: 385 LKSESERMRKVDR 397 >gi|150398262|ref|YP_001328729.1| radical SAM protein [Sinorhizobium medicae WSM419] gi|205829889|sp|A6UE14|RLMN_SINMW RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|150029777|gb|ABR61894.1| radical SAM enzyme, Cfr family [Sinorhizobium medicae WSM419] Length = 413 Score = 546 bits (1408), Expect = e-153, Method: Compositional matrix adjust. Identities = 256/373 (68%), Positives = 313/373 (83%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K SLIG++RE++ + L++ G+P+R V+MR SQ+W W+YVRG+ DF MS++S+++R +L Sbjct: 27 EKPSLIGLLREDMAKLLVEKGVPERQVKMRVSQVWHWLYVRGVSDFNEMSNVSKDMREML 86 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + HF+I PEIV+E++S DGTRKWLLRFP R G PVEIETVYIPE+ RGTLC+SSQVGC Sbjct: 87 SAHFTIARPEIVEEQVSGDGTRKWLLRFPPRGAGRPVEIETVYIPEEGRGTLCISSQVGC 146 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +LTCSFC+TGTQKLVRNLTAEEIL Q+LLAR LGDFP + +G ++P+ GRKI+N+VM Sbjct: 147 TLTCSFCHTGTQKLVRNLTAEEILAQLLLARDRLGDFPDRDTPQGAIVPAEGRKITNVVM 206 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NF+NVK +L IASD GLS SKRRITLSTSG VP I R GEEIGVMLAISLH Sbjct: 207 MGMGEPLYNFENVKTALLIASDGDGLSLSKRRITLSTSGIVPEIYRTGEEIGVMLAISLH 266 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV +DLR++LVPIN+KYPL+ L++ACR YPGLSNARRITFEYVMLK +NDS DA L+K Sbjct: 267 AVRDDLRDMLVPINKKYPLKELMEACRAYPGLSNARRITFEYVMLKDVNDSLEDAKELVK 326 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGIPAKINLIPFNPWPG Y CSD + I F++ I ++GY+SPIRTPRG DILAACGQ Sbjct: 327 LLKGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINQAGYASPIRTPRGRDILAACGQ 386 Query: 365 LKSLSKRIPKVPR 377 LKS S+R+ KV R Sbjct: 387 LKSDSERMRKVDR 399 >gi|205829900|sp|Q2K3B1|RLMN_RHIEC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase Length = 409 Score = 545 bits (1404), Expect = e-153, Method: Compositional matrix adjust. Identities = 256/373 (68%), Positives = 309/373 (82%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K SLIG+ REE+ AL + G+P++ ++MR SQ+W WIYVRG+ DF M+++++++R +L Sbjct: 22 EKPSLIGLSREEMAAALREKGVPEKQIKMRVSQLWNWIYVRGVSDFDHMTNVAKDMREML 81 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 QHF+I PEIV+E++S DGTRKWLLRFPAR G PVEIE VYIPE+ RGTLC+SSQVGC Sbjct: 82 KQHFTIARPEIVEEQVSNDGTRKWLLRFPARGAGRPVEIEAVYIPEEGRGTLCISSQVGC 141 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR LGDFP E +G ++P+ GRK+SNIVM Sbjct: 142 TLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNIVM 201 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFD VK++L IA+D GLS SKRR+TLSTSG VP I R GEEIGVMLAISLH Sbjct: 202 MGMGEPLYNFDAVKQALLIATDGDGLSLSKRRVTLSTSGVVPEIFRTGEEIGVMLAISLH 261 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV +DLR+ILVPIN+KYPL+ LIDAC+ YPGLSNARRITFEYVMLK +NDS DA LIK Sbjct: 262 AVRDDLRDILVPINKKYPLKELIDACKAYPGLSNARRITFEYVMLKDVNDSLEDAKGLIK 321 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKG+PAKINLIPFNPWPG Y CSD + I F++ I +GY+SPIRTPRG DILAACGQ Sbjct: 322 LLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAACGQ 381 Query: 365 LKSLSKRIPKVPR 377 LKS S+R+ K R Sbjct: 382 LKSESERMRKTER 394 >gi|110635192|ref|YP_675400.1| radical SAM protein [Mesorhizobium sp. BNC1] gi|122965694|sp|Q11EE0|RLMN_MESSB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|110286176|gb|ABG64235.1| 23S rRNA m(2)A-2503 methyltransferase [Chelativorans sp. BNC1] Length = 408 Score = 543 bits (1398), Expect = e-152, Method: Compositional matrix adjust. Identities = 258/384 (67%), Positives = 313/384 (81%), Gaps = 3/384 (0%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K+ LIG+ REE+ +AL IG+P+R V MR Q+W W+YVRG+ DF M +IS+E+R Sbjct: 22 VEKKPLIGLSREEMAQALASIGVPERQVNMRVRQLWHWLYVRGVSDFSRMFNISKELRAK 81 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L++HF+I PEIV+E+IS DGTRKWLLRFP R G PVE+ETVYIPE+ RGTLC+SSQVG Sbjct: 82 LDEHFTIARPEIVEEQISQDGTRKWLLRFPPRGAGRPVEVETVYIPEEDRGTLCISSQVG 141 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+LTCSFC+TGTQK+VRNLTA EIL Q+L+AR LGDFP + +G ++P+ GRKI+NIV Sbjct: 142 CTLTCSFCHTGTQKMVRNLTAGEILDQLLIARDRLGDFPDADTPDGAIVPAEGRKITNIV 201 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL NF+NVK++L +ASD GLS SKRRITLSTSG VP I R GEEIG+MLAISL Sbjct: 202 MMGMGEPLYNFENVKQALLVASDGDGLSLSKRRITLSTSGVVPEIYRTGEEIGIMLAISL 261 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HAV ++LRN LVPIN+KYPL+ L+DACR YPGLSNARRITFEYVMLKG+NDS DA L+ Sbjct: 262 HAVRDELRNELVPINKKYPLKDLLDACRAYPGLSNARRITFEYVMLKGVNDSLDDARELV 321 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LKGIPAKINLIPFNPWPG Y CSD + I F+E + R+GY+SPIRTPRG DILAACG Sbjct: 322 RLLKGIPAKINLIPFNPWPGSAYECSDWEQIEKFAELVNRAGYASPIRTPRGRDILAACG 381 Query: 364 QLKSLSKRIPKVPR---QEMQITG 384 QLKS S+R+ K R + M I G Sbjct: 382 QLKSASERMKKTERLKLEAMMIAG 405 >gi|15966967|ref|NP_387320.1| hypothetical protein SMc03831 [Sinorhizobium meliloti 1021] gi|307301740|ref|ZP_07581499.1| radical SAM enzyme, Cfr family [Sinorhizobium meliloti BL225C] gi|307316235|ref|ZP_07595679.1| radical SAM enzyme, Cfr family [Sinorhizobium meliloti AK83] gi|81633717|sp|Q92L68|RLMN_RHIME RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|15076240|emb|CAC47793.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021] gi|306898075|gb|EFN28817.1| radical SAM enzyme, Cfr family [Sinorhizobium meliloti AK83] gi|306903438|gb|EFN34027.1| radical SAM enzyme, Cfr family [Sinorhizobium meliloti BL225C] Length = 411 Score = 542 bits (1396), Expect = e-152, Method: Compositional matrix adjust. Identities = 255/373 (68%), Positives = 312/373 (83%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K SLIG++R+++ + L + G+P+R V+MR SQ+W W+YVRG+ DF MS++S+++R +L Sbjct: 25 EKPSLIGLLRDDIAKLLAEKGVPERQVKMRVSQLWHWLYVRGVSDFDEMSNVSKDMREML 84 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +HF+I P+IV+E++S DGTRKWLLRFP R G PVEIETVYIPE+ RGTLC+SSQVGC Sbjct: 85 KEHFTIARPDIVEEQVSGDGTRKWLLRFPPRGAGRPVEIETVYIPEEGRGTLCISSQVGC 144 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +LTCSFC+TGTQKLVRNLTAEEIL Q+LLAR LGDFP + +G ++P+ GRKI+NIVM Sbjct: 145 TLTCSFCHTGTQKLVRNLTAEEILSQLLLARDRLGDFPERDTPQGAIVPAEGRKITNIVM 204 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NF+NVK +L IASD GLS SKRRITLSTSG VP I R GEEIGVMLAISLH Sbjct: 205 MGMGEPLYNFENVKTALLIASDGDGLSLSKRRITLSTSGIVPEIYRTGEEIGVMLAISLH 264 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV +DLR++LVPIN+KYPL+ L++ACR YPGLSNARRITFEYVMLK +NDS DA L+K Sbjct: 265 AVRDDLRDMLVPINKKYPLKQLMEACRAYPGLSNARRITFEYVMLKDVNDSLEDAKELVK 324 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGIPAKINLIPFNPWPG Y CSD + I F++ I ++GY+SPIRTPRG DILAACGQ Sbjct: 325 LLKGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINQAGYASPIRTPRGRDILAACGQ 384 Query: 365 LKSLSKRIPKVPR 377 LKS S+R+ KV R Sbjct: 385 LKSESERMRKVDR 397 >gi|327190218|gb|EGE57323.1| hypothetical protein RHECNPAF_44600102 [Rhizobium etli CNPAF512] Length = 411 Score = 541 bits (1394), Expect = e-152, Method: Compositional matrix adjust. Identities = 254/373 (68%), Positives = 308/373 (82%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K SLIG+ REE+ AL + G+ ++ ++MR +Q+W WIYVRG+ DF M+++++++R +L Sbjct: 24 EKPSLIGLSREEMAAALREKGVAEKQIKMRVAQLWNWIYVRGVSDFDHMTNVAKDMREML 83 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 QHF+I PEIV+E++S DGTRKWLLRFPAR G PVEIE VYIPE+ RGTLC+SSQVGC Sbjct: 84 KQHFTIARPEIVEEQVSNDGTRKWLLRFPARGAGRPVEIEAVYIPEEGRGTLCISSQVGC 143 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR LGDFP E +G ++P+ GRK+SNIVM Sbjct: 144 TLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNIVM 203 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFD VK++L IA+D GLS SKRR+TLSTSG VP I R GEEIGVMLAISLH Sbjct: 204 MGMGEPLYNFDAVKQALLIATDGDGLSLSKRRVTLSTSGVVPEIFRTGEEIGVMLAISLH 263 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV +DLR+ILVPIN+KYPL+ LIDAC+ YPGLSNARRITFEYVMLK +NDS DA LIK Sbjct: 264 AVRDDLRDILVPINKKYPLKELIDACKAYPGLSNARRITFEYVMLKDVNDSLEDAKGLIK 323 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKG+PAKINLIPFNPWPG Y CSD + I F++ I +GY+SPIRTPRG DILAACGQ Sbjct: 324 LLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAACGQ 383 Query: 365 LKSLSKRIPKVPR 377 LKS S+R+ K R Sbjct: 384 LKSESERMRKTER 396 >gi|239830929|ref|ZP_04679258.1| radical SAM enzyme, Cfr family [Ochrobactrum intermedium LMG 3301] gi|239823196|gb|EEQ94764.1| radical SAM enzyme, Cfr family [Ochrobactrum intermedium LMG 3301] Length = 411 Score = 541 bits (1394), Expect = e-152, Method: Compositional matrix adjust. Identities = 259/382 (67%), Positives = 310/382 (81%), Gaps = 3/382 (0%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIGM REE+ +AL+K+G+P+R +MR SQ+W W+YVRG+ DF M +IS+++R LL Sbjct: 27 KPSLIGMSREEMAQALIKVGVPERQTKMRISQLWHWLYVRGVSDFADMRNISKDLRALLA 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 QHF+I PE+V+E+IS DGTRKWL RFP R G PVEIE+VYIPE+ RGTLC+SSQVGC+ Sbjct: 87 QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCISSQVGCT 146 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLT+EEIL Q+L AR LGDFP + +G ++P+ GRKI+NIVMM Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V ++LR+ILVPIN+KYPLE LI ACR YPGLSNA+RITFEYVMLK INDS DA L+K+ Sbjct: 267 VRDELRDILVPINKKYPLEQLIKACREYPGLSNAKRITFEYVMLKDINDSLEDAKLLVKL 326 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+GIPAKINLIPFNPWPG Y CSD + I F++ + +GY+SPIRTPRG DILAACGQL Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386 Query: 366 KSLSKRIPKVPR---QEMQITG 384 KS S+R+ K R + M I G Sbjct: 387 KSESERMRKSERLALEAMMIAG 408 >gi|153007435|ref|YP_001368650.1| radical SAM protein [Ochrobactrum anthropi ATCC 49188] gi|205829793|sp|A6WV17|RLMN_OCHA4 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|151559323|gb|ABS12821.1| radical SAM enzyme, Cfr family [Ochrobactrum anthropi ATCC 49188] Length = 411 Score = 541 bits (1393), Expect = e-152, Method: Compositional matrix adjust. Identities = 260/382 (68%), Positives = 310/382 (81%), Gaps = 3/382 (0%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIGM REE+ EAL+K G+P+R V+MR SQ+W W+YVRG+ DF M +IS+++R +L Sbjct: 27 KPSLIGMSREEMAEALIKAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 QHF+I PE+V+E+IS DGTRKWL RFP R G PVEIE+VYIPE+ RGTLCVSSQVGC+ Sbjct: 87 QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCVSSQVGCT 146 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLT+EEIL Q+L AR LGDFP + +G ++P+ GRKI+NIVMM Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V ++LR+ILVPIN+KYPLE LI ACR YPGLSNA+RITFEYVMLK INDS DA L+K+ Sbjct: 267 VRDELRDILVPINKKYPLEQLIKACREYPGLSNAKRITFEYVMLKDINDSLEDAKLLVKL 326 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+GIPAKINLIPFNPWPG Y CS+ + I F++ + +GY+SPIRTPRG DILAACGQL Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSEWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386 Query: 366 KSLSKRIPKVPR---QEMQITG 384 KS S+R+ K R + M I G Sbjct: 387 KSESERMRKSERLALEAMMIAG 408 >gi|190893778|ref|YP_001980320.1| hypothetical protein RHECIAT_CH0004213 [Rhizobium etli CIAT 652] gi|254807196|sp|B3PQY8|RLMN_RHIE6 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|190699057|gb|ACE93142.1| hypothetical conserved protein [Rhizobium etli CIAT 652] Length = 409 Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust. Identities = 253/373 (67%), Positives = 308/373 (82%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K SLIG+ R+E+ AL + G+ ++ ++MR +Q+W WIYVRG+ DF M+++++++R +L Sbjct: 22 EKPSLIGLSRQEMAAALREKGVAEKQIKMRVAQLWNWIYVRGVSDFDHMTNVAKDMREML 81 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 QHF+I PEIV+E++S DGTRKWLLRFPAR G PVEIE VYIPE+ RGTLC+SSQVGC Sbjct: 82 KQHFTIARPEIVEEQVSNDGTRKWLLRFPARGAGRPVEIEAVYIPEEGRGTLCISSQVGC 141 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR LGDFP E +G ++P+ GRK+SNIVM Sbjct: 142 TLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNIVM 201 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFD VK++L IA+D GLS SKRR+TLSTSG VP I R GEEIGVMLAISLH Sbjct: 202 MGMGEPLYNFDAVKQALLIATDGDGLSLSKRRVTLSTSGVVPEIFRTGEEIGVMLAISLH 261 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV +DLR+ILVPIN+KYPL+ LIDAC+ YPGLSNARRITFEYVMLK +NDS DA LIK Sbjct: 262 AVRDDLRDILVPINKKYPLKELIDACKAYPGLSNARRITFEYVMLKDVNDSLEDAKGLIK 321 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKG+PAKINLIPFNPWPG Y CSD + I F++ I +GY+SPIRTPRG DILAACGQ Sbjct: 322 LLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAACGQ 381 Query: 365 LKSLSKRIPKVPR 377 LKS S+R+ K R Sbjct: 382 LKSESERMRKTER 394 >gi|116254249|ref|YP_770087.1| hypothetical protein RL4522 [Rhizobium leguminosarum bv. viciae 3841] gi|123384474|sp|Q1MAN2|RLMN_RHIL3 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|115258897|emb|CAK10006.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 408 Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust. Identities = 254/374 (67%), Positives = 308/374 (82%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 L+K SLIGM REE+ AL + G+ ++ ++MR SQ+W WIYVRG+ DF M+++++++R + Sbjct: 20 LEKPSLIGMSREEMGAALREKGVAEKQIKMRVSQLWNWIYVRGVSDFDHMTNVAKDMREM 79 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L QHF+I PEIV+E++S DGTRKWLLRFP R G PVEIE VYIPE+ RGTLC+SSQVG Sbjct: 80 LKQHFTIARPEIVEEQVSNDGTRKWLLRFPPRGAGRPVEIEAVYIPEEGRGTLCISSQVG 139 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR LGDFP E +G ++P+ GRK+SNIV Sbjct: 140 CTLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNIV 199 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL NFD VK++L IA+D GLS S+RR+TLSTSG VP I R GEEIGVMLAISL Sbjct: 200 MMGMGEPLYNFDAVKQALLIATDGDGLSLSRRRVTLSTSGVVPEIFRTGEEIGVMLAISL 259 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HAV +DLR++LVPIN+KYPL+ LI+ACR YPGLSNARRITFEYVMLK +NDS DA LI Sbjct: 260 HAVRDDLRDLLVPINKKYPLKELIEACRTYPGLSNARRITFEYVMLKDVNDSLEDAKGLI 319 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+LKG+PAKINLIPFNPWPG Y CSD + I F++ I +GY+SPIRTPRG DILAACG Sbjct: 320 KLLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAACG 379 Query: 364 QLKSLSKRIPKVPR 377 QLKS S+R+ K R Sbjct: 380 QLKSESERMRKTER 393 >gi|118592064|ref|ZP_01549458.1| hypothetical protein SIAM614_25347 [Stappia aggregata IAM 12614] gi|118435360|gb|EAV42007.1| hypothetical protein SIAM614_25347 [Stappia aggregata IAM 12614] Length = 407 Score = 539 bits (1389), Expect = e-151, Method: Compositional matrix adjust. Identities = 252/375 (67%), Positives = 310/375 (82%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +LIG+ REEL EAL IG+PQ+ RMR SQ+W W+YVRG+ DF M++I++++R L+ Sbjct: 30 KPTLIGLSREELGEALGTIGVPQKQWRMRASQLWHWLYVRGVSDFAQMTNIAKDLRQKLD 89 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + F+I PEIV E+IS DGTRKWL RFPAR G PVE+ETVYIPE+ RGTLCVSSQVGC+ Sbjct: 90 EAFTIARPEIVSEQISVDGTRKWLFRFPARGAGRPVEVETVYIPEEGRGTLCVSSQVGCT 149 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTC+FC+TGTQK+VRNLTAEEIL Q+L+AR LGDFP + +G ++PS GR ++NIVMM Sbjct: 150 LTCTFCHTGTQKMVRNLTAEEILSQILIARDRLGDFPHADTPQGAIVPSEGRLVTNIVMM 209 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNVKK+L IASD GLS SKRRITLSTSG VP I R GEEIG MLAISLHA Sbjct: 210 GMGEPLYNFDNVKKALLIASDGDGLSLSKRRITLSTSGVVPEIFRTGEEIGCMLAISLHA 269 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V ++LR++LVPIN+K+ ++ L+DACR YPGLSNA+RITFEYVMLKG+NDS +DAL L+++ Sbjct: 270 VRDELRDVLVPINKKWNIKELLDACRQYPGLSNAKRITFEYVMLKGVNDSNKDALELVRL 329 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKGIPAKINLIPFNPWPG +Y CSD + I F++ + R+GY+SPIRTPRG DI AACGQL Sbjct: 330 LKGIPAKINLIPFNPWPGTDYECSDWERIEEFADIVNRAGYASPIRTPRGRDIFAACGQL 389 Query: 366 KSLSKRIPKVPRQEM 380 KS S+R+ K R+ + Sbjct: 390 KSASERMRKKDREAL 404 >gi|241206731|ref|YP_002977827.1| radical SAM enzyme, Cfr family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860621|gb|ACS58288.1| radical SAM enzyme, Cfr family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 409 Score = 538 bits (1385), Expect = e-151, Method: Compositional matrix adjust. Identities = 253/374 (67%), Positives = 309/374 (82%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K SLIG+ REE+ AL + G+ ++ ++MR SQ+W WIYVRG+ DF M+++++++R + Sbjct: 21 VEKPSLIGLSREEMGAALREKGVAEKQIKMRVSQLWNWIYVRGVSDFDHMTNVAKDMREM 80 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L QHF+I PEIV+E++S DGTRKWLLRFPAR G PVEIE VYIPE+ RGTLC+SSQVG Sbjct: 81 LKQHFTIERPEIVEEQVSNDGTRKWLLRFPARGAGRPVEIEAVYIPEEGRGTLCLSSQVG 140 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR LGDFP E +G ++P+ GRK+SNIV Sbjct: 141 CTLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNIV 200 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL NFD VK++L IA+D GLS S+RR+TLSTSG VP I R GEEIGVMLAISL Sbjct: 201 MMGMGEPLYNFDAVKQALLIATDGDGLSLSRRRVTLSTSGVVPEIFRTGEEIGVMLAISL 260 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HAV +DLR++LVPIN+KYPL+ LI+ACR YPGLSNARRITFEYVMLK +NDS DA LI Sbjct: 261 HAVRDDLRDLLVPINKKYPLKELIEACRTYPGLSNARRITFEYVMLKDVNDSLEDAKGLI 320 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+LKG+PAKINLIPFNPWPG Y CSD + I F++ I +GY+SPIRTPRG DILAACG Sbjct: 321 KLLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAACG 380 Query: 364 QLKSLSKRIPKVPR 377 QLKS S+R+ K R Sbjct: 381 QLKSESERMRKTDR 394 >gi|260467307|ref|ZP_05813481.1| radical SAM enzyme, Cfr family [Mesorhizobium opportunistum WSM2075] gi|259028911|gb|EEW30213.1| radical SAM enzyme, Cfr family [Mesorhizobium opportunistum WSM2075] Length = 466 Score = 537 bits (1384), Expect = e-151, Method: Compositional matrix adjust. Identities = 262/384 (68%), Positives = 309/384 (80%), Gaps = 4/384 (1%) Query: 5 KKESLIGMMREELEEALLKIGI-PQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +K SLIG+ R EL EAL+ GI P+R +MR Q+W W+YVRG+ DF GM +IS+++R Sbjct: 79 EKPSLIGLTRAELGEALVASGIVPERQAKMRAQQLWHWMYVRGVSDFAGMFNISKDLRAE 138 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L++HF++ PEIV+E+IS DGTRKWL RFP R G PVEIETVYIPE+ RGTLC+SSQVG Sbjct: 139 LDKHFTVARPEIVEEQISADGTRKWLFRFPPRGAGRPVEIETVYIPEEGRGTLCISSQVG 198 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+LTCSFC+TGTQKLVRNLTAEEIL Q+L AR LGDFP + +G ++P+ GRK+SNIV Sbjct: 199 CTLTCSFCHTGTQKLVRNLTAEEILAQLLTARDRLGDFPDRDTPDGAIVPAEGRKVSNIV 258 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R GEEIGVMLAISL Sbjct: 259 MMGMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVVPEIFRTGEEIGVMLAISL 318 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA ++DLR++LVPIN+KYPL+ LI ACR YPGLSNARRITFEYVMLK +NDS DA LI Sbjct: 319 HATNDDLRDLLVPINKKYPLKDLIAACRAYPGLSNARRITFEYVMLKDVNDSIEDAKGLI 378 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+LKGIPAKINLIPFNPWPG Y CSD + I F++ I +GY+SPIRTPRG DILAACG Sbjct: 379 KLLKGIPAKINLIPFNPWPGTNYQCSDWETIEKFADYINNAGYASPIRTPRGRDILAACG 438 Query: 364 QLKSLSKRIPKVPR---QEMQITG 384 QLKS S+R+ KV R + M I G Sbjct: 439 QLKSESERMRKVDRLALEAMMIAG 462 >gi|306846345|ref|ZP_07478896.1| radical SAM enzyme, Cfr family [Brucella sp. BO1] gi|306273188|gb|EFM55079.1| radical SAM enzyme, Cfr family [Brucella sp. BO1] Length = 411 Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust. Identities = 258/382 (67%), Positives = 308/382 (80%), Gaps = 3/382 (0%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIGM REE+ AL+ G+P+R V+MR SQ+W W+YVRG+ DF M +IS+++R +L Sbjct: 27 KPSLIGMSREEMAAALIAAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 QHF+I PE+V+E+IS DGTRKWL RFP R G PVEIE+VYIPE+ RGTLC+SSQVGC+ Sbjct: 87 QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCISSQVGCT 146 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLT+EEIL Q+L AR LGDFP + +G ++P+ GRKI+NIVMM Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V ++LR+ILVPIN+KYPLE LI ACR YPGLSNA+RITFEYVMLK INDS DA L+K+ Sbjct: 267 VRDELRDILVPINKKYPLEQLIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKL 326 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+GIPAKINLIPFNPWPG Y CSD + I F++ + +GY+SPIRTPRG DILAACGQL Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386 Query: 366 KSLSKRIPKVPR---QEMQITG 384 KS S+R+ K R + M I G Sbjct: 387 KSESERLRKSERLALEAMMIAG 408 >gi|222087496|ref|YP_002546033.1| hypothetical protein Arad_4378 [Agrobacterium radiobacter K84] gi|254807146|sp|B9JCI9|RLMN_AGRRK RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|221724944|gb|ACM28100.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 411 Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust. Identities = 255/372 (68%), Positives = 306/372 (82%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIG+ REE+ AL + G+ + V+MR SQ+W WIYVRG+ DF M+++S+++R +L Sbjct: 26 KPSLIGLTREEMGAALKEKGVADKQVKMRVSQLWNWIYVRGVSDFDAMANVSKDMREMLK 85 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 HF+I PEIV+E++S DGTRKWLLRFP R G PVE+ETVYIPE+ RGTLCVSSQVGCS Sbjct: 86 AHFTIARPEIVEEQVSNDGTRKWLLRFPPRGAGRPVEVETVYIPEEGRGTLCVSSQVGCS 145 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR LGDFP E +G ++P+ GRK+SN+VMM Sbjct: 146 LTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNMVMM 205 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF++VK +L IASD GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA Sbjct: 206 GMGEPLYNFESVKTALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 265 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V +DLR++LVPIN+KYPL+ L+DACR YPGLSNARRITFEYVMLKG+NDS DA LI++ Sbjct: 266 VRDDLRDMLVPINKKYPLKELMDACRAYPGLSNARRITFEYVMLKGVNDSLEDAKGLIQL 325 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKGIP+KINLIPFNPWPG Y CSD + I F++ I +GY+SPIRTPRG DILAACGQL Sbjct: 326 LKGIPSKINLIPFNPWPGTNYQCSDWEQIEKFADFINAAGYASPIRTPRGRDILAACGQL 385 Query: 366 KSLSKRIPKVPR 377 KS S+R+ K R Sbjct: 386 KSDSERMRKTER 397 >gi|209551296|ref|YP_002283213.1| radical SAM protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|254807197|sp|B5ZTF1|RLMN_RHILW RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|209537052|gb|ACI56987.1| radical SAM enzyme, Cfr family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 408 Score = 536 bits (1381), Expect = e-150, Method: Compositional matrix adjust. Identities = 252/374 (67%), Positives = 308/374 (82%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 L+K SLIG+ REE+ AL + G+ ++ ++MR +Q+W WIYVRG+ DF M+++++++R + Sbjct: 20 LEKPSLIGLSREEMGAALRERGVAEKQIKMRVAQLWNWIYVRGVSDFDHMTNVAKDMREM 79 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L QHF+I PEIV+E++S DGTRKWLLRFP R G PVEIE VYIPE+ RGTLC+SSQVG Sbjct: 80 LKQHFTIARPEIVEEQVSNDGTRKWLLRFPPRGAGRPVEIEAVYIPEEGRGTLCISSQVG 139 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR LGDFP E +G ++P+ GRK+SNIV Sbjct: 140 CTLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNIV 199 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL NFD VK++L IA+D GLS S+RR+TLSTSG VP I R GEEIGVMLAISL Sbjct: 200 MMGMGEPLYNFDAVKQALLIATDGDGLSLSRRRVTLSTSGVVPEIFRTGEEIGVMLAISL 259 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HAV +DLR+ILVPIN+KYPL+ LI+AC+ YPGLSNARRITFEYVMLK +NDS DA LI Sbjct: 260 HAVRDDLRDILVPINKKYPLKELIEACKAYPGLSNARRITFEYVMLKDVNDSLEDAKGLI 319 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+LKG+PAKINLIPFNPWPG Y CSD + I F++ I +GY+SPIRTPRG DILAACG Sbjct: 320 KLLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAACG 379 Query: 364 QLKSLSKRIPKVPR 377 QLKS S+R+ K R Sbjct: 380 QLKSESERMRKTER 393 >gi|306842623|ref|ZP_07475272.1| radical SAM enzyme, Cfr family [Brucella sp. BO2] gi|306287268|gb|EFM58756.1| radical SAM enzyme, Cfr family [Brucella sp. BO2] Length = 411 Score = 535 bits (1379), Expect = e-150, Method: Compositional matrix adjust. Identities = 257/382 (67%), Positives = 307/382 (80%), Gaps = 3/382 (0%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIGM REE+ L+ G+P+R V+MR SQ+W W+YVRG+ DF M +IS+++R +L Sbjct: 27 KPSLIGMSREEMAATLIAAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 QHF+I PE+V+E+IS DGTRKWL RFP R G PVEIE+VYIPE+ RGTLC+SSQVGC+ Sbjct: 87 QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCISSQVGCT 146 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLT+EEIL Q+L AR LGDFP + +G ++P+ GRKI+NIVMM Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V ++LR+ILVPIN+KYPLE LI ACR YPGLSNA+RITFEYVMLK INDS DA L+K+ Sbjct: 267 VRDELRDILVPINKKYPLEQLIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKL 326 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+GIPAKINLIPFNPWPG Y CSD + I F++ + +GY+SPIRTPRG DILAACGQL Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386 Query: 366 KSLSKRIPKVPR---QEMQITG 384 KS S+R+ K R + M I G Sbjct: 387 KSESERLRKSERLALEAMMIAG 408 >gi|307942545|ref|ZP_07657893.1| radical SAM enzyme, Cfr family [Roseibium sp. TrichSKD4] gi|307774184|gb|EFO33397.1| radical SAM enzyme, Cfr family [Roseibium sp. TrichSKD4] Length = 406 Score = 535 bits (1378), Expect = e-150, Method: Compositional matrix adjust. Identities = 250/376 (66%), Positives = 308/376 (81%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+G+ RE+L EAL IGIP + RMR +Q+W W+YVRG+ DF M++I++++R L Sbjct: 30 EKPNLVGLDREQLAEALGGIGIPVKQQRMRVAQLWHWLYVRGVSDFGAMTNIAKDLRAQL 89 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 ++FSI PEIV E+IS DGTRKWL RFP R G PVE+ETVYIPE+ RGTLCVSSQVGC Sbjct: 90 EENFSIARPEIVSEQISVDGTRKWLFRFPPRGAGRPVEVETVYIPEEGRGTLCVSSQVGC 149 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +LTC+FC+TGTQKLVRNLT+EEIL Q+L+AR LLGDFP + +G ++PS GR +SNIVM Sbjct: 150 TLTCTFCHTGTQKLVRNLTSEEILAQILMARDLLGDFPEAKTPQGAIVPSEGRLVSNIVM 209 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NF+NVK++L IASD GLS SKRRITLSTSG VP IAR G+EIG MLAISLH Sbjct: 210 MGMGEPLYNFENVKRALLIASDGDGLSLSKRRITLSTSGVVPEIARTGDEIGCMLAISLH 269 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV +DLR++LVPIN+K+ LE L+D CR YPGLSNA+RITFEYVMLKG+NDS DA L++ Sbjct: 270 AVRDDLRDVLVPINKKWSLEKLLDTCRAYPGLSNAKRITFEYVMLKGVNDSNADAKQLVQ 329 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGIPAKINLIPFNPWPG +Y CSD + I F++ + R+GY+SPIRTPRG DI AACGQ Sbjct: 330 LLKGIPAKINLIPFNPWPGSDYECSDWERIEEFADIVNRAGYASPIRTPRGRDIFAACGQ 389 Query: 365 LKSLSKRIPKVPRQEM 380 LKS S+R+ K R+ + Sbjct: 390 LKSASERMRKKDREAL 405 >gi|319780692|ref|YP_004140168.1| radical SAM enzyme, Cfr family [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166580|gb|ADV10118.1| radical SAM enzyme, Cfr family [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 411 Score = 535 bits (1378), Expect = e-150, Method: Compositional matrix adjust. Identities = 259/384 (67%), Positives = 309/384 (80%), Gaps = 4/384 (1%) Query: 5 KKESLIGMMREELEEALLKIG-IPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +K+SLIG+ R EL E L+ G +P+R +MR Q+W W+YVRG+ DF GM +IS+++R Sbjct: 24 EKQSLIGLTRIELAETLVASGAVPERQAKMRAQQLWHWMYVRGVSDFAGMFNISKDLRAE 83 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L++HF++ PEIV+E+IS DGTRKWL RFP R G PVEIETVYIPE+ RGTLC+SSQVG Sbjct: 84 LDKHFTVARPEIVEEQISADGTRKWLFRFPPRGAGRPVEIETVYIPEEGRGTLCISSQVG 143 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+LTCSFC+TGTQKLVRNLTAEEIL Q+L AR LGDFP + +G ++P+ GRK+SNIV Sbjct: 144 CTLTCSFCHTGTQKLVRNLTAEEILAQLLTARDRLGDFPDRDTPDGAIVPAEGRKVSNIV 203 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R GEEIGVMLAISL Sbjct: 204 MMGMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVVPEIFRTGEEIGVMLAISL 263 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA ++DLR++LVPIN+KYPL+ LI ACR YPGLSNA+RITFEYVMLK +NDS DA LI Sbjct: 264 HATNDDLRDLLVPINKKYPLKELIAACRAYPGLSNAKRITFEYVMLKDVNDSIEDAKGLI 323 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+LKGIPAKINLIPFNPWPG Y CSD + I F++ I +GY+SPIRTPRG DILAACG Sbjct: 324 KLLKGIPAKINLIPFNPWPGTNYQCSDWETIEKFADYINNAGYASPIRTPRGRDILAACG 383 Query: 364 QLKSLSKRIPKVPR---QEMQITG 384 QLKS S+R+ KV R + M I G Sbjct: 384 QLKSDSERMRKVDRLALEAMMIAG 407 >gi|225851618|ref|YP_002731851.1| radical SAM protein [Brucella melitensis ATCC 23457] gi|256264871|ref|ZP_05467403.1| ribosomal RNA large subunit methyltransferase N [Brucella melitensis bv. 2 str. 63/9] gi|254807158|sp|C0RGD9|RLMN_BRUMB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|225639983|gb|ACN99896.1| radical SAM enzyme, Cfr family protein [Brucella melitensis ATCC 23457] gi|263095326|gb|EEZ18953.1| ribosomal RNA large subunit methyltransferase N [Brucella melitensis bv. 2 str. 63/9] gi|326408090|gb|ADZ65155.1| radical SAM protein [Brucella melitensis M28] gi|326537806|gb|ADZ86021.1| radical SAM enzyme, Cfr family protein [Brucella melitensis M5-90] Length = 411 Score = 535 bits (1377), Expect = e-150, Method: Compositional matrix adjust. Identities = 257/382 (67%), Positives = 307/382 (80%), Gaps = 3/382 (0%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIGM REE+ AL+ G+P+R V+MR SQ+W W+YVRG+ DF M +IS+++R +L Sbjct: 27 KPSLIGMSREEMAAALIAAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 QHF+I PE+V+E+IS DGTRKWL RFP R G PVEIE+VYIPE+ RGTLC+SSQVGC+ Sbjct: 87 QHFTIARPEVVEEQISQDGTRKWLFRFPPRSAGRPVEIESVYIPEEGRGTLCISSQVGCT 146 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLT+EEIL Q+L AR LGDFP + +G ++P+ GRKI+NIVMM Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V ++LR+ILVPIN+KYPL LI ACR YPGLSNA+RITFEYVMLK INDS DA L+K+ Sbjct: 267 VRDELRDILVPINKKYPLAELIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKL 326 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+GIPAKINLIPFNPWPG Y CSD + I F++ + +GY+SPIRTPRG DILAACGQL Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386 Query: 366 KSLSKRIPKVPR---QEMQITG 384 KS S+R+ K R + M I G Sbjct: 387 KSESERLRKSERLALEAMMIAG 408 >gi|256112582|ref|ZP_05453503.1| radical SAM protein [Brucella melitensis bv. 3 str. Ether] gi|265994024|ref|ZP_06106581.1| ribosomal RNA large subunit methyltransferase N [Brucella melitensis bv. 3 str. Ether] gi|262765005|gb|EEZ10926.1| ribosomal RNA large subunit methyltransferase N [Brucella melitensis bv. 3 str. Ether] Length = 411 Score = 535 bits (1377), Expect = e-150, Method: Compositional matrix adjust. Identities = 257/382 (67%), Positives = 307/382 (80%), Gaps = 3/382 (0%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIGM REE+ AL+ G+P+R V+MR SQ+W W+YVRG+ DF M +IS+++R +L Sbjct: 27 KPSLIGMSREEMAAALIAAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 QHF+I PE+V+E+IS DGTRKWL RFP R G PVEIE+VYIPE+ RGTLC+SSQVGC+ Sbjct: 87 QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCISSQVGCT 146 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLT+EEIL Q+L AR LGDFP + +G ++P+ GRKI+NIVMM Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V ++LR+ILVPIN+KYPL LI ACR YPGLSNA+RITFEYVMLK INDS DA L+K+ Sbjct: 267 VRDELRDILVPINKKYPLAELIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKL 326 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+GIPAKINLIPFNPWPG Y CSD + I F++ + +GY+SPIRTPRG DILAACGQL Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386 Query: 366 KSLSKRIPKVPR---QEMQITG 384 KS S+R+ K R + M I G Sbjct: 387 KSESERLRKSERLALEAMMIAG 408 >gi|17988150|ref|NP_540784.1| florfenicol resistance protein [Brucella melitensis bv. 1 str. 16M] gi|148559330|ref|YP_001258119.1| hypothetical protein BOV_0076 [Brucella ovis ATCC 25840] gi|161618064|ref|YP_001591951.1| radical SAM protein [Brucella canis ATCC 23365] gi|163842351|ref|YP_001626755.1| radical SAM protein [Brucella suis ATCC 23445] gi|225626623|ref|ZP_03784662.1| radical SAM enzyme, Cfr family protein [Brucella ceti str. Cudo] gi|254694877|ref|ZP_05156705.1| radical SAM protein [Brucella abortus bv. 3 str. Tulya] gi|254700891|ref|ZP_05162719.1| radical SAM protein [Brucella suis bv. 5 str. 513] gi|254705255|ref|ZP_05167083.1| radical SAM protein [Brucella suis bv. 3 str. 686] gi|254707222|ref|ZP_05169050.1| radical SAM protein [Brucella pinnipedialis M163/99/10] gi|254709233|ref|ZP_05171044.1| radical SAM protein [Brucella pinnipedialis B2/94] gi|254713344|ref|ZP_05175155.1| radical SAM protein [Brucella ceti M644/93/1] gi|254716302|ref|ZP_05178113.1| radical SAM protein [Brucella ceti M13/05/1] gi|254718297|ref|ZP_05180108.1| radical SAM protein [Brucella sp. 83/13] gi|256030756|ref|ZP_05444370.1| radical SAM protein [Brucella pinnipedialis M292/94/1] gi|256045869|ref|ZP_05448743.1| radical SAM protein [Brucella melitensis bv. 1 str. Rev.1] gi|256158774|ref|ZP_05456640.1| radical SAM protein [Brucella ceti M490/95/1] gi|256254161|ref|ZP_05459697.1| radical SAM protein [Brucella ceti B1/94] gi|256368543|ref|YP_003106049.1| radical SAM protein [Brucella microti CCM 4915] gi|260169660|ref|ZP_05756471.1| radical SAM protein [Brucella sp. F5/99] gi|260563156|ref|ZP_05833642.1| ribosomal RNA large subunit methyltransferase N [Brucella melitensis bv. 1 str. 16M] gi|260567277|ref|ZP_05837747.1| ribosomal RNA large subunit methyltransferase N [Brucella suis bv. 4 str. 40] gi|261215209|ref|ZP_05929490.1| radical SAM protein [Brucella abortus bv. 3 str. Tulya] gi|261218081|ref|ZP_05932362.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti M13/05/1] gi|261221308|ref|ZP_05935589.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti B1/94] gi|261314704|ref|ZP_05953901.1| ribosomal RNA large subunit methyltransferase N [Brucella pinnipedialis M163/99/10] gi|261316737|ref|ZP_05955934.1| ribosomal RNA large subunit methyltransferase N [Brucella pinnipedialis B2/94] gi|261321072|ref|ZP_05960269.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti M644/93/1] gi|261751404|ref|ZP_05995113.1| ribosomal RNA large subunit methyltransferase N [Brucella suis bv. 5 str. 513] gi|261755967|ref|ZP_05999676.1| ribosomal RNA large subunit methyltransferase N [Brucella suis bv. 3 str. 686] gi|261759193|ref|ZP_06002902.1| ribosomal RNA large subunit methyltransferase N [Brucella sp. F5/99] gi|265983258|ref|ZP_06095993.1| ribosomal RNA large subunit methyltransferase N [Brucella sp. 83/13] gi|265987808|ref|ZP_06100365.1| ribosomal RNA large subunit methyltransferase N [Brucella pinnipedialis M292/94/1] gi|265992284|ref|ZP_06104841.1| ribosomal RNA large subunit methyltransferase N [Brucella melitensis bv. 1 str. Rev.1] gi|265997270|ref|ZP_06109827.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti M490/95/1] gi|306838909|ref|ZP_07471737.1| radical SAM enzyme, Cfr family [Brucella sp. NF 2653] gi|81851121|sp|Q8YEL1|RLMN_BRUME RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829674|sp|A9M6S9|RLMN_BRUC2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829675|sp|A5VN22|RLMN_BRUO2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829676|sp|B0CII9|RLMN_BRUSI RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|17983908|gb|AAL53048.1| florfenicol resistance protein [Brucella melitensis bv. 1 str. 16M] gi|148370587|gb|ABQ60566.1| conserved hypothetical protein TIGR00048 [Brucella ovis ATCC 25840] gi|161334875|gb|ABX61180.1| radical SAM enzyme, Cfr family [Brucella canis ATCC 23365] gi|163673074|gb|ABY37185.1| radical SAM enzyme, Cfr family [Brucella suis ATCC 23445] gi|225618280|gb|EEH15323.1| radical SAM enzyme, Cfr family protein [Brucella ceti str. Cudo] gi|255998701|gb|ACU47100.1| radical SAM protein [Brucella microti CCM 4915] gi|260153172|gb|EEW88264.1| ribosomal RNA large subunit methyltransferase N [Brucella melitensis bv. 1 str. 16M] gi|260156795|gb|EEW91875.1| ribosomal RNA large subunit methyltransferase N [Brucella suis bv. 4 str. 40] gi|260916816|gb|EEX83677.1| radical SAM protein [Brucella abortus bv. 3 str. Tulya] gi|260919892|gb|EEX86545.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti B1/94] gi|260923170|gb|EEX89738.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti M13/05/1] gi|261293762|gb|EEX97258.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti M644/93/1] gi|261295960|gb|EEX99456.1| ribosomal RNA large subunit methyltransferase N [Brucella pinnipedialis B2/94] gi|261303730|gb|EEY07227.1| ribosomal RNA large subunit methyltransferase N [Brucella pinnipedialis M163/99/10] gi|261739177|gb|EEY27173.1| ribosomal RNA large subunit methyltransferase N [Brucella sp. F5/99] gi|261741157|gb|EEY29083.1| ribosomal RNA large subunit methyltransferase N [Brucella suis bv. 5 str. 513] gi|261745720|gb|EEY33646.1| ribosomal RNA large subunit methyltransferase N [Brucella suis bv. 3 str. 686] gi|262551738|gb|EEZ07728.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti M490/95/1] gi|263003350|gb|EEZ15643.1| ribosomal RNA large subunit methyltransferase N [Brucella melitensis bv. 1 str. Rev.1] gi|264660005|gb|EEZ30266.1| ribosomal RNA large subunit methyltransferase N [Brucella pinnipedialis M292/94/1] gi|264661850|gb|EEZ32111.1| ribosomal RNA large subunit methyltransferase N [Brucella sp. 83/13] gi|306406025|gb|EFM62276.1| radical SAM enzyme, Cfr family [Brucella sp. NF 2653] Length = 411 Score = 534 bits (1376), Expect = e-150, Method: Compositional matrix adjust. Identities = 257/382 (67%), Positives = 307/382 (80%), Gaps = 3/382 (0%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIGM REE+ AL+ G+P+R V+MR SQ+W W+YVRG+ DF M +IS+++R +L Sbjct: 27 KPSLIGMSREEMAAALIAAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 QHF+I PE+V+E+IS DGTRKWL RFP R G PVEIE+VYIPE+ RGTLC+SSQVGC+ Sbjct: 87 QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCISSQVGCT 146 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLT+EEIL Q+L AR LGDFP + +G ++P+ GRKI+NIVMM Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V ++LR+ILVPIN+KYPL LI ACR YPGLSNA+RITFEYVMLK INDS DA L+K+ Sbjct: 267 VRDELRDILVPINKKYPLAELIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKL 326 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+GIPAKINLIPFNPWPG Y CSD + I F++ + +GY+SPIRTPRG DILAACGQL Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386 Query: 366 KSLSKRIPKVPR---QEMQITG 384 KS S+R+ K R + M I G Sbjct: 387 KSESERLRKSERLALEAMMIAG 408 >gi|13473680|ref|NP_105248.1| hypothetical protein mlr4359 [Mesorhizobium loti MAFF303099] gi|81778968|sp|Q98E86|RLMN_RHILO RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|14024431|dbj|BAB51034.1| mlr4359 [Mesorhizobium loti MAFF303099] Length = 410 Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust. Identities = 260/384 (67%), Positives = 308/384 (80%), Gaps = 4/384 (1%) Query: 5 KKESLIGMMREELEEALLKIGI-PQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +K SLIG+ R EL EAL+ GI P+R +MR Q+W W+YVRG+ DF GM +IS+++R Sbjct: 23 EKPSLIGLTRAELGEALVASGIVPERQAKMRAQQLWHWMYVRGVSDFAGMFNISKDLRAE 82 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L++HF++ PEIV+E+IS DGTRKWL RFP R G PVEIETVYIPE+ RGTLC+SSQVG Sbjct: 83 LDKHFTVARPEIVEEQISSDGTRKWLFRFPPRGAGRPVEIETVYIPEEGRGTLCISSQVG 142 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+LTCSFC+TGTQKLVRNLT EEIL Q+L AR LGDFP + +G ++P+ GRK+SNIV Sbjct: 143 CTLTCSFCHTGTQKLVRNLTTEEILAQLLTARDRLGDFPDRDTPDGAIVPAEGRKVSNIV 202 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R GEEIGVMLAISL Sbjct: 203 MMGMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVVPEIFRTGEEIGVMLAISL 262 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA ++DLR++LVPIN+KYPL+ LI ACR YPGLSNA+RITFEYVMLK +NDS DA LI Sbjct: 263 HATNDDLRDLLVPINKKYPLKELIAACRAYPGLSNAKRITFEYVMLKDVNDSIEDAKGLI 322 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+LKGIPAKINLIPFNPWPG Y CSD + I F++ I +GY+SPIRTPRG DILAACG Sbjct: 323 KLLKGIPAKINLIPFNPWPGTNYQCSDWETIEKFADYINNAGYASPIRTPRGRDILAACG 382 Query: 364 QLKSLSKRIPKVPR---QEMQITG 384 QLKS S+R+ KV R + M I G Sbjct: 383 QLKSESERMRKVDRLALEAMMIAG 406 >gi|325294043|ref|YP_004279907.1| Ribosomal RNA large subunit methyltransferase N [Agrobacterium sp. H13-3] gi|325061896|gb|ADY65587.1| Ribosomal RNA large subunit methyltransferase N [Agrobacterium sp. H13-3] Length = 412 Score = 533 bits (1372), Expect = e-149, Method: Compositional matrix adjust. Identities = 252/372 (67%), Positives = 305/372 (81%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIGM REE+ EAL +IG+PQ+ V+MR SQ+W W+YVRG+ DF M+++++E+R L Sbjct: 26 KPSLIGMTREEMGEALAEIGVPQKQVKMRVSQLWNWLYVRGVSDFDNMTNVAKELREKLK 85 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F+I PEIV+E+IS DGTRKWL+RFP R G PVEIETVYIPE+ RGTLC+SSQVGCS Sbjct: 86 AAFTIARPEIVEEQISNDGTRKWLMRFPPRGAGRPVEIETVYIPEEGRGTLCISSQVGCS 145 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR LGDFP G +PS GRK+SNIVMM Sbjct: 146 LTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDGSTPVGAYVPSEGRKVSNIVMM 205 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF++VK +L IA+D GLS SKRR+TLSTSG VP I R G+EIGVMLAISLHA Sbjct: 206 GMGEPLYNFEHVKTALLIATDGDGLSLSKRRVTLSTSGVVPEIFRTGDEIGVMLAISLHA 265 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V +DLR++LVPIN+KYPL+ LI+ACR+YPG+SNARRITFEYVMLK +NDS DA L+++ Sbjct: 266 VRDDLRDMLVPINKKYPLKELIEACRNYPGVSNARRITFEYVMLKDVNDSLEDAKMLVQL 325 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G+PAKINLIPFNPWPG Y CS+ I F++ I ++GY+SPIRTPRG DILAACGQL Sbjct: 326 LRGVPAKINLIPFNPWPGTNYQCSEWAQIEKFADFINQAGYASPIRTPRGRDILAACGQL 385 Query: 366 KSLSKRIPKVPR 377 KS S+R+ K R Sbjct: 386 KSESERMRKTER 397 >gi|205829733|sp|Q7CWI1|RLMN_AGRT5 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase Length = 409 Score = 532 bits (1370), Expect = e-149, Method: Compositional matrix adjust. Identities = 252/372 (67%), Positives = 305/372 (81%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIG+ REE+ EAL +IG+PQ+ V+MR SQ+W W+YVRG+ DF M+++++E+R L Sbjct: 23 KPSLIGLTREEMGEALAEIGVPQKQVKMRVSQLWNWLYVRGVSDFDNMTNVAKELREKLK 82 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F+I PEIV+E+IS DGTRKWL+RFP R G PVEIETVYIPE+ RGTLC+SSQVGCS Sbjct: 83 AAFTIARPEIVEEQISNDGTRKWLMRFPPRGAGRPVEIETVYIPEEGRGTLCISSQVGCS 142 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR LGDFP G +PS GRK+SNIVMM Sbjct: 143 LTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDGSTPVGAYVPSEGRKVSNIVMM 202 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF++VK +L IA+D GLS SKRR+TLSTSG VP I R G+EIGVMLAISLHA Sbjct: 203 GMGEPLYNFEHVKTALLIATDGDGLSLSKRRVTLSTSGVVPEIFRTGDEIGVMLAISLHA 262 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V +DLR++LVPIN+KYPL+ LI+ACR+YPG+SNARRITFEYVMLK +NDS DA L+++ Sbjct: 263 VRDDLRDMLVPINKKYPLKELIEACRNYPGVSNARRITFEYVMLKDVNDSLEDAKMLVQL 322 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG+PAKINLIPFNPWPG Y CS+ I F++ I ++GY+SPIRTPRG DILAACGQL Sbjct: 323 LKGVPAKINLIPFNPWPGTNYQCSEWAQIEKFADFINQAGYASPIRTPRGRDILAACGQL 382 Query: 366 KSLSKRIPKVPR 377 KS S+R+ K R Sbjct: 383 KSESERMRKTER 394 >gi|294851482|ref|ZP_06792155.1| cfr family radical SAM enzyme [Brucella sp. NVSL 07-0026] gi|294820071|gb|EFG37070.1| cfr family radical SAM enzyme [Brucella sp. NVSL 07-0026] Length = 411 Score = 531 bits (1369), Expect = e-149, Method: Compositional matrix adjust. Identities = 256/382 (67%), Positives = 306/382 (80%), Gaps = 3/382 (0%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIGM REE+ A + G+P+R V+MR SQ+W W+YVRG+ DF M +IS+++R +L Sbjct: 27 KPSLIGMSREEMATARIAAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 QHF+I PE+V+E+IS DGTRKWL RFP R G PVEIE+VYIPE+ RGTLC+SSQVGC+ Sbjct: 87 QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCISSQVGCT 146 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLT+EEIL Q+L AR LGDFP + +G ++P+ GRKI+NIVMM Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V ++LR+ILVPIN+KYPL LI ACR YPGLSNA+RITFEYVMLK INDS DA L+K+ Sbjct: 267 VRDELRDILVPINKKYPLAELIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKL 326 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+GIPAKINLIPFNPWPG Y CSD + I F++ + +GY+SPIRTPRG DILAACGQL Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386 Query: 366 KSLSKRIPKVPR---QEMQITG 384 KS S+R+ K R + M I G Sbjct: 387 KSESERLRKSERLALEAMMIAG 408 >gi|159185320|ref|NP_355610.2| hypothetical protein Atu2673 [Agrobacterium tumefaciens str. C58] gi|159140577|gb|AAK88395.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 390 Score = 531 bits (1368), Expect = e-149, Method: Compositional matrix adjust. Identities = 252/372 (67%), Positives = 305/372 (81%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIG+ REE+ EAL +IG+PQ+ V+MR SQ+W W+YVRG+ DF M+++++E+R L Sbjct: 4 KPSLIGLTREEMGEALAEIGVPQKQVKMRVSQLWNWLYVRGVSDFDNMTNVAKELREKLK 63 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F+I PEIV+E+IS DGTRKWL+RFP R G PVEIETVYIPE+ RGTLC+SSQVGCS Sbjct: 64 AAFTIARPEIVEEQISNDGTRKWLMRFPPRGAGRPVEIETVYIPEEGRGTLCISSQVGCS 123 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR LGDFP G +PS GRK+SNIVMM Sbjct: 124 LTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDGSTPVGAYVPSEGRKVSNIVMM 183 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF++VK +L IA+D GLS SKRR+TLSTSG VP I R G+EIGVMLAISLHA Sbjct: 184 GMGEPLYNFEHVKTALLIATDGDGLSLSKRRVTLSTSGVVPEIFRTGDEIGVMLAISLHA 243 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V +DLR++LVPIN+KYPL+ LI+ACR+YPG+SNARRITFEYVMLK +NDS DA L+++ Sbjct: 244 VRDDLRDMLVPINKKYPLKELIEACRNYPGVSNARRITFEYVMLKDVNDSLEDAKMLVQL 303 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG+PAKINLIPFNPWPG Y CS+ I F++ I ++GY+SPIRTPRG DILAACGQL Sbjct: 304 LKGVPAKINLIPFNPWPGTNYQCSEWAQIEKFADFINQAGYASPIRTPRGRDILAACGQL 363 Query: 366 KSLSKRIPKVPR 377 KS S+R+ K R Sbjct: 364 KSESERMRKTER 375 >gi|328541802|ref|YP_004301911.1| ribosomal RNA large subunit methyltransferase N [polymorphum gilvum SL003B-26A1] gi|326411554|gb|ADZ68617.1| Ribosomal RNA large subunit methyltransferase N [Polymorphum gilvum SL003B-26A1] Length = 414 Score = 531 bits (1368), Expect = e-149, Method: Compositional matrix adjust. Identities = 249/375 (66%), Positives = 306/375 (81%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + +LIG+ R+EL +A+ +IG+P++ RMR +Q+W W+YVRG+ DF M++I++++R L+ Sbjct: 36 RPTLIGLTRDELADAMGEIGVPEKQRRMRAAQLWHWLYVRGVSDFALMTNIAKDLRQQLD 95 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F+I PEIV E+IS DGTRKWL RFP R G PVEIETVYIPE+ RGTLCVSSQVGC+ Sbjct: 96 ARFTIARPEIVSEQISVDGTRKWLFRFPPRGAGRPVEIETVYIPEEGRGTLCVSSQVGCT 155 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTC+FC+TGTQKLVRNLTAEEIL Q+L+AR LGDFP +G V+PS GR +SNIVMM Sbjct: 156 LTCTFCHTGTQKLVRNLTAEEILSQILMARDRLGDFPDAATPQGAVVPSEGRLVSNIVMM 215 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+NVKK+L IASD GLS SKRRITLSTSG VP IAR G EIG MLAISLHA Sbjct: 216 GMGEPLYNFENVKKALLIASDGDGLSLSKRRITLSTSGVVPEIARAGAEIGCMLAISLHA 275 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V++DLR++LVPINRK+ + L+DACR YPGLSNA+RITFEYVMLKG+NDS DA L+++ Sbjct: 276 VNDDLRDVLVPINRKWRIRDLLDACRAYPGLSNAKRITFEYVMLKGVNDSDADARELVRL 335 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKGIPAKINLIPFNPWPG +Y CSD + I F++ + R+GY+SPIRTPRG DI AACGQL Sbjct: 336 LKGIPAKINLIPFNPWPGSDYECSDWERIEQFADIVNRAGYASPIRTPRGRDIFAACGQL 395 Query: 366 KSLSKRIPKVPRQEM 380 KS S+R+ K R+ + Sbjct: 396 KSASERMRKKDREAV 410 >gi|23500991|ref|NP_697118.1| hypothetical protein BR0077 [Brucella suis 1330] gi|81753358|sp|Q8G374|RLMN_BRUSU RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|23346851|gb|AAN29033.1| conserved hypothetical protein TIGR00048 [Brucella suis 1330] Length = 411 Score = 531 bits (1367), Expect = e-149, Method: Compositional matrix adjust. Identities = 256/382 (67%), Positives = 306/382 (80%), Gaps = 3/382 (0%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIGM REE+ AL+ G+P+R V+MR SQ+W W+YVRG+ DF M +IS+++R +L Sbjct: 27 KPSLIGMSREEMAAALIAAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 QHF+I PE+V+E+IS DGTRKWL RFP R G PVEIE+VYIPE+ RGTLC+SSQVGC+ Sbjct: 87 QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCISSQVGCT 146 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLT+EEIL Q+L AR LGDFP + +G ++P+ GRKI+NIVMM Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+ VKK+L IASD G S SKRRITLSTSG VP I R G+EIGVMLAISLHA Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGPSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V ++LR+ILVPIN+KYPL LI ACR YPGLSNA+RITFEYVMLK INDS DA L+K+ Sbjct: 267 VRDELRDILVPINKKYPLAELIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKL 326 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+GIPAKINLIPFNPWPG Y CSD + I F++ + +GY+SPIRTPRG DILAACGQL Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386 Query: 366 KSLSKRIPKVPR---QEMQITG 384 KS S+R+ K R + M I G Sbjct: 387 KSESERLRKSERLALEAMMIAG 408 >gi|114705378|ref|ZP_01438286.1| hypothetical protein FP2506_10576 [Fulvimarina pelagi HTCC2506] gi|114540163|gb|EAU43283.1| hypothetical protein FP2506_10576 [Fulvimarina pelagi HTCC2506] Length = 407 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 246/378 (65%), Positives = 305/378 (80%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 ++ SLIGM REEL EAL +G+P + VRMRT+Q+W W+YVRG+ DF M+++S+++R+ L Sbjct: 28 ERTSLIGMSREELGEALAAVGVPAKQVRMRTAQLWHWLYVRGVSDFAHMANVSKDLRNKL 87 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + ++I PEIV E++S DGTRKW+ RFP R G PVEIETVYIPE+ RGTLCVSSQVGC Sbjct: 88 DAAYTIARPEIVTEQVSVDGTRKWVFRFPPRGAGRPVEIETVYIPEEGRGTLCVSSQVGC 147 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +LTC+FC+TGTQ+LVRNLTA EI+ QVLLAR LGDFP + G ++PS GR +SN+VM Sbjct: 148 TLTCTFCHTGTQRLVRNLTAGEIVSQVLLARERLGDFPDVDTPAGAIVPSEGRLVSNVVM 207 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV +L + SD GLS SKRRITLSTSG VP I R GEE GVMLAISLH Sbjct: 208 MGMGEPLYNFDNVATALGVISDGEGLSVSKRRITLSTSGVVPEIVRAGEETGVMLAISLH 267 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV+++LR+ LVPIN+KYPL L++ACR+YPGLSNA+RITFEYVMLKG+NDS DA NL++ Sbjct: 268 AVNDELRDELVPINKKYPLATLLEACRNYPGLSNAKRITFEYVMLKGVNDSMEDARNLVR 327 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGIPAKINLIPFNPWPG Y CSD I F++ + ++GY+SPIRTPRG DI AACGQ Sbjct: 328 MLKGIPAKINLIPFNPWPGSRYECSDWDQIERFADYVNQAGYASPIRTPRGRDIFAACGQ 387 Query: 365 LKSLSKRIPKVPRQEMQI 382 LKS S+R+ K R +++ Sbjct: 388 LKSESERMRKKDRDRIEL 405 >gi|62289063|ref|YP_220856.1| hypothetical protein BruAb1_0077 [Brucella abortus bv. 1 str. 9-941] gi|82699000|ref|YP_413574.1| hypothetical protein BAB1_0074 [Brucella melitensis biovar Abortus 2308] gi|189023336|ref|YP_001934104.1| hypothetical protein BAbS19_I00700 [Brucella abortus S19] gi|237814550|ref|ZP_04593548.1| radical SAM enzyme, Cfr family [Brucella abortus str. 2308 A] gi|254690389|ref|ZP_05153643.1| hypothetical protein Babob68_09499 [Brucella abortus bv. 6 str. 870] gi|254696506|ref|ZP_05158334.1| hypothetical protein Babob28_02005 [Brucella abortus bv. 2 str. 86/8/59] gi|254731419|ref|ZP_05189997.1| hypothetical protein Babob42_09524 [Brucella abortus bv. 4 str. 292] gi|256258643|ref|ZP_05464179.1| hypothetical protein Babob9C_15111 [Brucella abortus bv. 9 str. C68] gi|260546356|ref|ZP_05822096.1| ribosomal RNA large subunit methyltransferase N [Brucella abortus NCTC 8038] gi|260755934|ref|ZP_05868282.1| radical SAM protein [Brucella abortus bv. 6 str. 870] gi|260759158|ref|ZP_05871506.1| radical SAM protein [Brucella abortus bv. 4 str. 292] gi|260760882|ref|ZP_05873225.1| radical SAM protein [Brucella abortus bv. 2 str. 86/8/59] gi|260884958|ref|ZP_05896572.1| ribosomal RNA large subunit methyltransferase N [Brucella abortus bv. 9 str. C68] gi|297247480|ref|ZP_06931198.1| cfr family radical SAM enzyme [Brucella abortus bv. 5 str. B3196] gi|75497518|sp|Q57FT9|RLMN_BRUAB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123740915|sp|Q2YNV3|RLMN_BRUA2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807157|sp|B2S7X6|RLMN_BRUA1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|62195195|gb|AAX73495.1| conserved hypothetical protein TIGR00048 [Brucella abortus bv. 1 str. 9-941] gi|82615101|emb|CAJ10030.1| Cytochrome c heme-binding site:Conserved hypothetical protein 48:Radical SAM [Brucella melitensis biovar Abortus 2308] gi|189018908|gb|ACD71630.1| Conserved hypothetical protein 48 [Brucella abortus S19] gi|237789387|gb|EEP63597.1| radical SAM enzyme, Cfr family [Brucella abortus str. 2308 A] gi|260096463|gb|EEW80339.1| ribosomal RNA large subunit methyltransferase N [Brucella abortus NCTC 8038] gi|260669476|gb|EEX56416.1| radical SAM protein [Brucella abortus bv. 4 str. 292] gi|260671314|gb|EEX58135.1| radical SAM protein [Brucella abortus bv. 2 str. 86/8/59] gi|260676042|gb|EEX62863.1| radical SAM protein [Brucella abortus bv. 6 str. 870] gi|260874486|gb|EEX81555.1| ribosomal RNA large subunit methyltransferase N [Brucella abortus bv. 9 str. C68] gi|297174649|gb|EFH33996.1| cfr family radical SAM enzyme [Brucella abortus bv. 5 str. B3196] Length = 411 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 256/382 (67%), Positives = 306/382 (80%), Gaps = 3/382 (0%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIGM REE+ AL+ G+P+R V+MR SQ+W W+YVRG+ DF M +IS+++R +L Sbjct: 27 KPSLIGMSREEMAAALIAAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 QHF+I PE+V+E+IS DGTRKWL RFP R G PVEIE+VYIPE+ RGTLC+SSQVGC+ Sbjct: 87 QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCISSQVGCT 146 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLT+EEIL Q+L AR LGDFP + +G ++P+ GRKI+NIVMM Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+ VKK+L IASD GLS SK RITLSTSG VP I R G+EIGVMLAISLHA Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKCRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V ++LR+ILVPIN+KYPL LI ACR YPGLSNA+RITFEYVMLK INDS DA L+K+ Sbjct: 267 VRDELRDILVPINKKYPLAELIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKL 326 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+GIPAKINLIPFNPWPG Y CSD + I F++ + +GY+SPIRTPRG DILAACGQL Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386 Query: 366 KSLSKRIPKVPR---QEMQITG 384 KS S+R+ K R + M I G Sbjct: 387 KSESERLRKSERLALEAMMIAG 408 >gi|49473706|ref|YP_031748.1| hypothetical protein BQ00190 [Bartonella quintana str. Toulouse] gi|81647409|sp|Q6G1C0|RLMN_BARQU RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|49239209|emb|CAF25526.1| hypothetical protein BQ00190 [Bartonella quintana str. Toulouse] Length = 409 Score = 528 bits (1359), Expect = e-148, Method: Compositional matrix adjust. Identities = 255/376 (67%), Positives = 304/376 (80%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIG+ + E+ EAL IG+P++ RMR Q+W W+YVRG+ +F + +IS+ +R +L Sbjct: 28 KRSLIGLSQNEMAEALKAIGVPEQQTRMRVRQLWHWLYVRGVSNFDEILNISKPIREMLK 87 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 HFSI PEIV E+IS DGTRKWLLRFPAR G PVEIETVYIPE+ RGTLC+SSQVGC+ Sbjct: 88 NHFSIARPEIVGEQISKDGTRKWLLRFPAREDGRPVEIETVYIPEEGRGTLCLSSQVGCT 147 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFCYTGTQ LVRNLTAEEIL Q+L+AR LGDFP +G ++P GRKI+NIVMM Sbjct: 148 LTCSFCYTGTQVLVRNLTAEEILAQLLVARDCLGDFPNRTTPDGAIVPVEGRKITNIVMM 207 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R GEEIGVMLA+SLHA Sbjct: 208 GMGEPLYNFEVVKKALLIASDGDGLSLSKRRITLSTSGVVPEIVRAGEEIGVMLAVSLHA 267 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V + LR++LVPIN+KYPL +LIDACR+YPGLSNA+RITFEYVMLKGINDS DA LI++ Sbjct: 268 VHDTLRDMLVPINKKYPLALLIDACRNYPGLSNAKRITFEYVMLKGINDSLDDAKRLIQL 327 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKGIPAKINLIPFNPWPG Y CSD + I F++ + ++GY+SPIR PRG DILAACGQL Sbjct: 328 LKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADVVNQAGYASPIRIPRGRDILAACGQL 387 Query: 366 KSLSKRIPKVPRQEMQ 381 KS S+R+ K R +++ Sbjct: 388 KSASERLRKSGRLQIE 403 >gi|163757380|ref|ZP_02164469.1| radical SAM enzyme, Cfr family protein [Hoeflea phototrophica DFL-43] gi|162284882|gb|EDQ35164.1| radical SAM enzyme, Cfr family protein [Hoeflea phototrophica DFL-43] Length = 410 Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust. Identities = 251/382 (65%), Positives = 305/382 (79%), Gaps = 3/382 (0%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K L+GM R+EL A+ + G+P+R +MR +Q+W W+YVRG DF M IS+++R L+ Sbjct: 25 KPVLVGMDRDELIAAMAEAGVPERQRKMRVNQLWHWLYVRGSSDFADMHTISKDLRDKLD 84 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 HFS+ PEIV+E+IS DGTRKWL+RFP R G PVE+ETVYIPE+ RGTLC+SSQVGC+ Sbjct: 85 AHFSVARPEIVEEQISSDGTRKWLMRFPPRGAGRPVEVETVYIPEEGRGTLCISSQVGCT 144 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTC+FC+TGTQKLVRNLT EEIL Q+L+AR LGDFP + +G ++P+ GRK++NIVMM Sbjct: 145 LTCTFCHTGTQKLVRNLTPEEILAQLLVARDRLGDFPHKDTPQGAIVPTEGRKVTNIVMM 204 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+NVKK+L IASD GL+ S+RRITLSTSG VP I R G EIGVMLAISLHA Sbjct: 205 GMGEPLYNFENVKKALLIASDGDGLALSRRRITLSTSGVVPEITRTGTEIGVMLAISLHA 264 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V ++LR+ LVPIN+KYPL+ L+DACR YPGLSNARRITFEYVMLKG+NDS DA L+++ Sbjct: 265 VRDELRDELVPINKKYPLKQLLDACRAYPGLSNARRITFEYVMLKGVNDSLSDAKELVRL 324 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKGIPAKINLIPFNPWPG Y CSD I TF++ I +GY+SPIRTPRG DILAACGQL Sbjct: 325 LKGIPAKINLIPFNPWPGSAYECSDWDTIETFADFINANGYASPIRTPRGRDILAACGQL 384 Query: 366 KSLSKRIPKVPR---QEMQITG 384 KS S+R+ K R + M I G Sbjct: 385 KSESERMRKTERLALEAMMIAG 406 >gi|254504202|ref|ZP_05116353.1| radical SAM enzyme, Cfr family [Labrenzia alexandrii DFL-11] gi|222440273|gb|EEE46952.1| radical SAM enzyme, Cfr family [Labrenzia alexandrii DFL-11] Length = 421 Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust. Identities = 248/375 (66%), Positives = 306/375 (81%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +LIG+ REEL EAL IG+PQ+ RMR+SQ+W W+YVRG+ DF MS+I++++R L+ Sbjct: 39 KPTLIGLSREELGEALGTIGVPQKQWRMRSSQLWHWLYVRGVSDFAEMSNIAKDLRSKLD 98 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + F+I P+IV E+IS DGTRKWL +FP R G PVE+ETVYIPE+ RGTLCVSSQVGC+ Sbjct: 99 EAFTIARPKIVSEQISVDGTRKWLFQFPPRGAGNPVEVETVYIPEEGRGTLCVSSQVGCT 158 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTC+FC+TGTQKLVRNLT+EEIL Q+L+AR LGDFP +G ++PS GR ++NIVMM Sbjct: 159 LTCTFCHTGTQKLVRNLTSEEILSQILIARDRLGDFPDAHTPQGAIVPSEGRLVTNIVMM 218 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+NVKK+L IASD GLS SKRRITLSTSG VP I R G+EIG MLAISLHA Sbjct: 219 GMGEPLYNFENVKKALLIASDGDGLSLSKRRITLSTSGVVPEIFRTGDEIGCMLAISLHA 278 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V ++ R+ILVPIN+K+ ++ L+DACR+YPGLSNA+RITFEYVMLK INDS DAL L+++ Sbjct: 279 VRDEDRDILVPINKKWNIKELLDACRNYPGLSNAKRITFEYVMLKDINDSNEDALELVRL 338 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKGIPAKINLIPFNPWPG +Y CSD + I F++ + R+GY+SPIRTPRG DI AACGQL Sbjct: 339 LKGIPAKINLIPFNPWPGSQYACSDWERIEEFADIVNRAGYASPIRTPRGRDIFAACGQL 398 Query: 366 KSLSKRIPKVPRQEM 380 KS S+R+ K R + Sbjct: 399 KSTSERMRKKDRDAL 413 >gi|254472235|ref|ZP_05085635.1| radical SAM enzyme, Cfr family [Pseudovibrio sp. JE062] gi|211958518|gb|EEA93718.1| radical SAM enzyme, Cfr family [Pseudovibrio sp. JE062] Length = 420 Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust. Identities = 247/379 (65%), Positives = 305/379 (80%), Gaps = 2/379 (0%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K SLIG+ REEL AL +G+P+R +RMR +Q+W W+YVRGI DF MS++S+++R L Sbjct: 34 EKPSLIGLSREELGNALAAVGVPERQIRMRVNQLWHWLYVRGISDFSKMSNVSKDLRTKL 93 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F+I PEIV E+IS DGTRKWL RFP+R G PVE+ETVYIPE+ RGTLC+SSQVGC Sbjct: 94 DFAFTIARPEIVTEQISVDGTRKWLFRFPSRGAGKPVEVETVYIPEEDRGTLCISSQVGC 153 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG--RKISNI 182 +LTC+FC+TGTQK+VRNLTAEEIL Q++LA+ L DFP + EG + S R+I+NI Sbjct: 154 TLTCTFCHTGTQKMVRNLTAEEILAQLMLAKDRLNDFPDADAPEGGLDASTSNRRRITNI 213 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL NF+NVKK+L IASD GLS SKRRITLSTSG P IAR G+EIG MLAIS Sbjct: 214 VMMGMGEPLYNFENVKKALLIASDGDGLSLSKRRITLSTSGVTPEIARTGDEIGCMLAIS 273 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHAV+++LRN+LVPIN+KY LE L+ ACR YPGLSNA+RITFEYVMLKG+NDS DA L Sbjct: 274 LHAVNDELRNVLVPINKKYNLETLLQACRDYPGLSNAKRITFEYVMLKGVNDSLEDAKKL 333 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +++LKGIPAKINL+PFNPWPG Y CSD + I F++ + R+GY+SPIRTPRG DI AAC Sbjct: 334 VQLLKGIPAKINLLPFNPWPGSPYECSDWEQIEEFADVVNRAGYASPIRTPRGRDIFAAC 393 Query: 363 GQLKSLSKRIPKVPRQEMQ 381 GQLKS S+R+ K R+ ++ Sbjct: 394 GQLKSASERLRKSEREALE 412 >gi|222150075|ref|YP_002551032.1| Fe-S-cluster redox protein [Agrobacterium vitis S4] gi|254807147|sp|B9JU97|RLMN_AGRVS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|221737057|gb|ACM38020.1| Fe-S-cluster redox protein [Agrobacterium vitis S4] Length = 410 Score = 525 bits (1351), Expect = e-147, Method: Compositional matrix adjust. Identities = 252/387 (65%), Positives = 308/387 (79%), Gaps = 3/387 (0%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M K +LIG REE+ E L +IG+ + VRMR +Q+W WIYVRG+ DF M+++++++ Sbjct: 19 MTGATKPTLIGQTREEMGEMLREIGVADKQVRMRVAQLWNWIYVRGVSDFDQMTNVAKDM 78 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L HF+I PEIV+E++S DGTRKWLLR+P R G PVE+E VYIPE+ RGTLCVSS Sbjct: 79 REKLKAHFTIARPEIVEEQVSNDGTRKWLLRYPPRGAGRPVEVECVYIPEEGRGTLCVSS 138 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC+LTC+FC+TGTQKLVRNLTAEE+L Q+LLAR LGDFP + G ++P+ GRKI+ Sbjct: 139 QVGCTLTCTFCHTGTQKLVRNLTAEEVLSQLLLARDRLGDFPDRDAPVGAMVPNEGRKIT 198 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R G+EIGVMLA Sbjct: 199 NMVMMGMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLA 258 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ISLHAV ++LR++LVPIN+KYPL+ LI+ACR+YPGLSNARRITFEYVMLK +NDS DA Sbjct: 259 ISLHAVRDELRDLLVPINKKYPLKDLIEACRNYPGLSNARRITFEYVMLKDVNDSLEDAK 318 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 LI++LKGIP+KINLIPFNPWPG Y CSD I+ F++ I +GY+SPIRTPRG DILA Sbjct: 319 GLIQLLKGIPSKINLIPFNPWPGTNYQCSDWDQIMKFADFINSAGYASPIRTPRGRDILA 378 Query: 361 ACGQLKSLSKRIPKVPR---QEMQITG 384 ACGQLKS S+R+ K R + M I G Sbjct: 379 ACGQLKSESERMRKTERLAYEAMMIVG 405 >gi|319403510|emb|CBI77089.1| conserved hypothetical protein [Bartonella rochalimae ATCC BAA-1498] Length = 409 Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust. Identities = 250/376 (66%), Positives = 302/376 (80%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K LIG+ +E+ +AL IG+P+ +MR QIW W+YVRG+ F M +IS+ +R +L Sbjct: 28 KLPLIGLSHDEIAQALQAIGVPEHQTQMRVRQIWHWLYVRGVSHFDEMLNISKPMREMLK 87 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +HFSI PEIV E+IS DGTRKWLLRFPA G PVEIETVYIPE++RGTLC+SSQVGC+ Sbjct: 88 EHFSIARPEIVAEQISQDGTRKWLLRFPASGAGKPVEIETVYIPEEARGTLCISSQVGCT 147 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLT EEIL+Q+L+AR LGDFP + +G +IP GRKI+N+VMM Sbjct: 148 LTCSFCHTGTQKLVRNLTVEEILVQLLVARDCLGDFPDKKTPDGAIIPIEGRKITNVVMM 207 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG +P I R G+EIGVMLAISLHA Sbjct: 208 GMGEPLYNFEAVKKALLIASDGNGLSLSKRRITLSTSGVIPGIIRTGKEIGVMLAISLHA 267 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V + LR+ILVPIN+KYPL +L++ACR+YPGLSNA+RITFEYVMLK +NDS DA LI++ Sbjct: 268 VHDTLRDILVPINKKYPLALLMEACRNYPGLSNAKRITFEYVMLKNVNDSLDDARKLIQL 327 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKGIPAKINLIPFNPWPG Y CSD + I F++ I ++GY+SPIR PRG DILAACGQL Sbjct: 328 LKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADIINKAGYASPIRMPRGRDILAACGQL 387 Query: 366 KSLSKRIPKVPRQEMQ 381 KS SKR+ K R ++ Sbjct: 388 KSASKRLAKSERIRLE 403 >gi|121601967|ref|YP_989610.1| radical SAM protein [Bartonella bacilliformis KC583] gi|205829667|sp|A1UUF7|RLMN_BARBK RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|120614144|gb|ABM44745.1| radical SAM enzyme, Cfr family [Bartonella bacilliformis KC583] Length = 414 Score = 522 bits (1344), Expect = e-146, Method: Compositional matrix adjust. Identities = 252/377 (66%), Positives = 300/377 (79%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 + +SLIG+ +E+ +AL IG+P+ RMR Q+W W YVRG+ F M +IS+ +R +L Sbjct: 28 QSQSLIGLSHDEMVQALRSIGVPEHQTRMRVRQLWHWFYVRGVSSFDEMFNISKPMREML 87 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +FSI YPEIV+E+IS DGT KWLLRFPAR G PVEIETVYIP + RGTLCVSSQVGC Sbjct: 88 KDNFSIAYPEIVEEQISKDGTYKWLLRFPARGAGKPVEIETVYIPGEGRGTLCVSSQVGC 147 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +LTCSFCYTGTQKLVRNLTAEEILLQ+L AR+ LGDFPG + + + RKI+NIVM Sbjct: 148 TLTCSFCYTGTQKLVRNLTAEEILLQLLFARNRLGDFPGKDKPDHSSLSEERRKITNIVM 207 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R GEEIGVMLA+SLH Sbjct: 208 MGMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVVPEIIRAGEEIGVMLAVSLH 267 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV + LR++LVPIN+KYPL ML++ACR+YPGLSNA+RITFEYVMLK +NDS DA LIK Sbjct: 268 AVCDSLRDVLVPINKKYPLSMLMEACRNYPGLSNAKRITFEYVMLKDVNDSLDDAKKLIK 327 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGIPAKINLIPFNPWPG Y CSD + I F++ I R+GY+SPIR PRG DILAACG Sbjct: 328 LLKGIPAKINLIPFNPWPGSHYECSDWEQIERFADVINRAGYASPIRMPRGRDILAACGN 387 Query: 365 LKSLSKRIPKVPRQEMQ 381 LKS S+R+ K R +++ Sbjct: 388 LKSTSERLRKSERLQLE 404 >gi|163867325|ref|YP_001608519.1| hypothetical protein Btr_0020 [Bartonella tribocorum CIP 105476] gi|205829668|sp|A9IL44|RLMN_BART1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|161016966|emb|CAK00524.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476] Length = 408 Score = 521 bits (1343), Expect = e-146, Method: Compositional matrix adjust. Identities = 250/376 (66%), Positives = 304/376 (80%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIG+ ++E+ +AL +G+P+R RMR Q+W W+YVRG+ +F M +IS+ ++ L Sbjct: 28 KLSLIGLSQDEIVQALKTVGVPERQTRMRARQLWHWLYVRGVSNFDEMLNISKVMQETLK 87 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 HFSI PEIV E+IS DGTRKWLLRFPAR G PVEIETVYIPE+ RGTLC+SSQVGC+ Sbjct: 88 HHFSIARPEIVGEQISKDGTRKWLLRFPARGAGRPVEIETVYIPEEGRGTLCLSSQVGCT 147 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQ LVRNLTAEEIL Q+L+AR LGDFP +G ++P GRK++NIVMM Sbjct: 148 LTCSFCHTGTQMLVRNLTAEEILAQLLVARDCLGDFPDKNTPDGAIVPVEGRKVTNIVMM 207 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N++ VKK+L IASD GLS SKRRITLSTSG VP I R GEEIGVMLAISLHA Sbjct: 208 GMGEPLYNYEAVKKALLIASDGDGLSLSKRRITLSTSGVVPGIIRTGEEIGVMLAISLHA 267 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V + +R++LVPIN+KYPL +L+DACR+YPGLSNA+RITFEYVMLK INDS DA LI++ Sbjct: 268 VHDTVRDMLVPINKKYPLTLLMDACRNYPGLSNAKRITFEYVMLKDINDSLDDAKRLIQL 327 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKGIPAKINLIPFNPWPG Y CSD + I F++ + ++GY+SPIRTPRG DILAACGQL Sbjct: 328 LKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADVVNQAGYASPIRTPRGRDILAACGQL 387 Query: 366 KSLSKRIPKVPRQEMQ 381 KS S+R+ K R +++ Sbjct: 388 KSASERLRKSERLKLE 403 >gi|319406423|emb|CBI80063.1| conserved hypothetical protein [Bartonella sp. 1-1C] Length = 409 Score = 521 bits (1341), Expect = e-146, Method: Compositional matrix adjust. Identities = 250/376 (66%), Positives = 300/376 (79%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K LIG+ +E+ +AL IG+P+ +MR Q+W W+YVRGI F M +IS+ +R +L Sbjct: 28 KLPLIGLSHDEMAQALQAIGVPEHQTQMRVRQLWHWLYVRGISHFDEMLNISKPMREMLK 87 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +HFSI PEIV E+IS DGTRKWLLRFPA G PVE+ETVYIPE+ RGTLC+SSQVGC+ Sbjct: 88 EHFSIARPEIVAEQISQDGTRKWLLRFPASGAGKPVEVETVYIPEEGRGTLCISSQVGCT 147 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLT EEIL+Q+L+AR LGDFP + + +IP GRKI+NIVMM Sbjct: 148 LTCSFCHTGTQKLVRNLTVEEILVQLLVARDCLGDFPDKKTPDSAIIPIEGRKITNIVMM 207 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA Sbjct: 208 GMGEPLYNFEAVKKALLIASDGNGLSLSKRRITLSTSGVVPRIIRTGKEIGVMLAISLHA 267 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V + LR+ILVPIN+KYPL +L++ACR+YPGLSNA+RITFEYVMLK +NDS DA LI++ Sbjct: 268 VHDALRDILVPINKKYPLALLMEACRNYPGLSNAKRITFEYVMLKNVNDSLDDARRLIQL 327 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKGIPAKINLIPFNPWPG Y CSD + I F++ I ++GY+SPIR PRG DILAACGQL Sbjct: 328 LKGIPAKINLIPFNPWPGSNYQCSDWEHIERFADIINKAGYASPIRVPRGRDILAACGQL 387 Query: 366 KSLSKRIPKVPRQEMQ 381 KS SKR+ K R ++ Sbjct: 388 KSASKRLAKSERMRLE 403 >gi|49474851|ref|YP_032892.1| hypothetical protein BH00200 [Bartonella henselae str. Houston-1] gi|81648360|sp|Q6G592|RLMN_BARHE RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|49237656|emb|CAF26836.1| hypothetical protein BH00200 [Bartonella henselae str. Houston-1] Length = 408 Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust. Identities = 250/376 (66%), Positives = 301/376 (80%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIG+ ++E+ EAL IGIP+R RMR Q+W W+YVRG+ +F M +IS+ ++ + Sbjct: 28 KLSLIGLSQDEMAEALKAIGIPERQTRMRVRQLWHWLYVRGVSNFDEMLNISKPMQEIFK 87 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +HFSI PEI E+IS DGTRKWLLRFP R G PVEIETVYIPE+ RGTLC+SSQVGC+ Sbjct: 88 KHFSIARPEIAGEQISKDGTRKWLLRFPPRGAGRPVEIETVYIPEEGRGTLCLSSQVGCT 147 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFCYTGTQ LVRNLTAEEIL Q+L+AR LGDFP +G ++P GRKI+NIVMM Sbjct: 148 LTCSFCYTGTQVLVRNLTAEEILAQLLVARDCLGDFPDRNTPDGAIVPVEGRKITNIVMM 207 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP + R GEEIGVMLAISLHA Sbjct: 208 GMGEPLYNFEAVKKALLIASDGNGLSLSKRRITLSTSGVVPGMIRTGEEIGVMLAISLHA 267 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V++ LR++LVPIN+KYPL +L+DACR YPGLSNA+RITFEYVMLK +NDS DA L+++ Sbjct: 268 VNDTLRDMLVPINKKYPLALLMDACRQYPGLSNAKRITFEYVMLKDVNDSLDDAKRLVQL 327 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKGIPAKINLIPFNPWPG Y CSD + I F++ + ++GY+SPIR PRG DILAACGQL Sbjct: 328 LKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADVVNQAGYASPIRIPRGRDILAACGQL 387 Query: 366 KSLSKRIPKVPRQEMQ 381 KS S+R+ K R ++ Sbjct: 388 KSASERLRKSERLHLE 403 >gi|240849701|ref|YP_002971089.1| hypothetical protein Bgr_00190 [Bartonella grahamii as4aup] gi|240266824|gb|ACS50412.1| hypothetical protein Bgr_00190 [Bartonella grahamii as4aup] Length = 408 Score = 517 bits (1332), Expect = e-145, Method: Compositional matrix adjust. Identities = 251/376 (66%), Positives = 301/376 (80%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIG+ ++E+ +AL +G+P+ RMR Q+W W+YVRG+ +F M +IS+ ++ L Sbjct: 28 KLSLIGLSQDEMVQALKTVGVPEHQTRMRVRQLWHWLYVRGVSNFDEMLNISKAMQETLK 87 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 HFSI PEIV E+IS DGTRKWLLRFPAR G PVEIETVYIPE+ RGTLC+SSQVGC+ Sbjct: 88 CHFSIARPEIVGEQISKDGTRKWLLRFPARGAGRPVEIETVYIPEEGRGTLCLSSQVGCT 147 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQ LVRNLTAEEIL Q+L+AR LGDFP +G ++P GRKI+NIVMM Sbjct: 148 LTCSFCHTGTQMLVRNLTAEEILAQLLVARDCLGDFPDKNTPDGAIVPIEGRKITNIVMM 207 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R GEEIGVMLAISLHA Sbjct: 208 GMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVVPGIIRTGEEIGVMLAISLHA 267 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V + LR++LVPIN+KYPL +L++ACR+YPGLSNA+RITFEYVMLK INDS DA LIK+ Sbjct: 268 VHDTLRDMLVPINKKYPLALLMEACRNYPGLSNAKRITFEYVMLKDINDSLDDAKRLIKL 327 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKGIPAKINLIPFNPWPG Y CSD + I F++ + ++GY+SPIR PRG DILAACGQL Sbjct: 328 LKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADVVNQAGYASPIRIPRGRDILAACGQL 387 Query: 366 KSLSKRIPKVPRQEMQ 381 KS S+R+ K R ++ Sbjct: 388 KSASERLRKSERLRLE 403 >gi|86359510|ref|YP_471402.1| hypothetical protein RHE_CH03930 [Rhizobium etli CFN 42] gi|86283612|gb|ABC92675.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 360 Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust. Identities = 244/345 (70%), Positives = 288/345 (83%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 MR SQ+W WIYVRG+ DF M+++++++R +L QHF+I PEIV+E++S DGTRKWLLRF Sbjct: 1 MRVSQLWNWIYVRGVSDFDHMTNVAKDMREMLKQHFTIARPEIVEEQVSNDGTRKWLLRF 60 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 PAR G PVEIE VYIPE+ RGTLC+SSQVGC+LTCSFC+TGTQ+LVRNLTAEEIL Q+L Sbjct: 61 PARGAGRPVEIEAVYIPEEGRGTLCISSQVGCTLTCSFCHTGTQRLVRNLTAEEILSQLL 120 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 LAR LGDFP E +G ++P+ GRK+SNIVMMGMGEPL NFD VK++L IA+D GLS Sbjct: 121 LARDRLGDFPDREAPQGTIMPAEGRKVSNIVMMGMGEPLYNFDAVKQALLIATDGDGLSL 180 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 SKRR+TLSTSG VP I R GEEIGVMLAISLHAV +DLR+ILVPIN+KYPL+ LIDAC+ Sbjct: 181 SKRRVTLSTSGVVPEIFRTGEEIGVMLAISLHAVRDDLRDILVPINKKYPLKELIDACKA 240 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 YPGLSNARRITFEYVMLK +NDS DA LIK+LKG+PAKINLIPFNPWPG Y CSD + Sbjct: 241 YPGLSNARRITFEYVMLKDVNDSLEDAKGLIKLLKGVPAKINLIPFNPWPGTNYQCSDWE 300 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPR 377 I F++ I +GY+SPIRTPRG DILAACGQLKS S+R+ K R Sbjct: 301 QIEKFADFINSAGYASPIRTPRGRDILAACGQLKSESERMRKTER 345 >gi|319404936|emb|CBI78538.1| conserved hypothetical protein [Bartonella sp. AR 15-3] Length = 409 Score = 515 bits (1327), Expect = e-144, Method: Compositional matrix adjust. Identities = 250/376 (66%), Positives = 297/376 (78%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K LIG+ ++E+ +AL IG+P+ RMR Q+W W+YVRG+ F M +IS+ +R +L Sbjct: 28 KLPLIGLSQDEMAQALRIIGVPEHQTRMRVHQLWHWLYVRGVSHFDEMLNISKPMRKMLK 87 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 HFSI PEIV E+IS DGTRKWLLRFPA PVEIE VYIPE+ RGTLCVSSQVGC+ Sbjct: 88 DHFSIARPEIVAEQISQDGTRKWLLRFPASGTERPVEIEMVYIPEEGRGTLCVSSQVGCT 147 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLTAEEIL+Q+L+AR LGDFP G +IP GRKI+NIVMM Sbjct: 148 LTCSFCHTGTQKLVRNLTAEEILVQLLVARDCLGDFPDKNTPNGAIIPIEGRKITNIVMM 207 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+ VKK+L IASD G S SKRRITLSTSG +P I R G+EIGVMLAISLHA Sbjct: 208 GMGEPLYNFEAVKKALLIASDGNGFSLSKRRITLSTSGVIPGIIRTGKEIGVMLAISLHA 267 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V + LR+ILVPIN+KYPL +L++ACR+YPGLSNA+RITFEYVMLK +NDS DA LI++ Sbjct: 268 VHDTLRDILVPINKKYPLALLMEACRNYPGLSNAKRITFEYVMLKNVNDSLDDAKKLIQL 327 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKGIPAKINLIPFNPWPG Y CSD + I F++ I ++GY+SPIR PRG DILAACGQL Sbjct: 328 LKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADLINKAGYASPIRMPRGRDILAACGQL 387 Query: 366 KSLSKRIPKVPRQEMQ 381 KS SKR+ K R ++ Sbjct: 388 KSASKRLCKSERMRLE 403 >gi|319898214|ref|YP_004158307.1| Fe-S containing enzyme [Bartonella clarridgeiae 73] gi|319402178|emb|CBI75709.1| putative Fe-S containing enzyme [Bartonella clarridgeiae 73] Length = 411 Score = 511 bits (1317), Expect = e-143, Method: Compositional matrix adjust. Identities = 246/376 (65%), Positives = 299/376 (79%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIG+ R+E+ +AL IG+P+ MR Q+W W+YVRG+ +F M +IS+ +R + Sbjct: 28 KLSLIGLSRDEMTQALQVIGVPEHQKGMRVRQLWHWLYVRGVSNFDEMLNISKPMREMFK 87 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 HFSI P+IV E+IS DGTRKWLL+FPA PVEIE VYIPE+ RGTLC+SSQVGC+ Sbjct: 88 DHFSIARPKIVAEQISQDGTRKWLLQFPASGTERPVEIEMVYIPEERRGTLCISSQVGCT 147 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLT EEIL+Q+L+AR LGDFP +G +IP GRKI+NIVMM Sbjct: 148 LTCSFCHTGTQKLVRNLTTEEILVQLLVARDCLGDFPDKNIPDGAIIPIEGRKITNIVMM 207 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG +P I R G+EIGVMLAISLHA Sbjct: 208 GMGEPLYNFEAVKKALLIASDGNGLSLSKRRITLSTSGVIPGIIRTGKEIGVMLAISLHA 267 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V + LRNILVPIN+KYPL +L++ACR+YPGLSNA+RITFEYVMLK +NDS DA L+++ Sbjct: 268 VHDKLRNILVPINKKYPLALLMEACRNYPGLSNAKRITFEYVMLKNVNDSLGDAKRLVQL 327 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKGIPAKINLIPFNPWPG Y CSD + I F++ + ++GY+SPIR PRG DILAACGQL Sbjct: 328 LKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADIVNKAGYASPIRMPRGRDILAACGQL 387 Query: 366 KSLSKRIPKVPRQEMQ 381 KS S+R+ K R E++ Sbjct: 388 KSASERLRKSERMELE 403 >gi|319407894|emb|CBI81546.1| conserved hypothetical protein [Bartonella schoenbuchensis R1] Length = 405 Score = 509 bits (1310), Expect = e-142, Method: Compositional matrix adjust. Identities = 245/372 (65%), Positives = 295/372 (79%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIG+ +E+ +AL +IG+P+ RMR Q+W W+YVRG+ F M +I++ +R +L Sbjct: 24 KLSLIGLSHDEMVQALEEIGVPKHQTRMRVRQLWHWLYVRGVSHFDEMLNIAKPMRRMLQ 83 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 HFSI PEIV+E+ S DGT KWLLRFPAR G PVEIETVYIPE+ RGTLC+SSQVGC+ Sbjct: 84 NHFSIARPEIVEEQTSNDGTCKWLLRFPARGAGKPVEIETVYIPEEGRGTLCISSQVGCT 143 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQ LVRNLTAEEIL Q+L+AR LGDFP +G + GRK++NIVMM Sbjct: 144 LTCSFCHTGTQTLVRNLTAEEILAQLLVARDRLGDFPEKNTPDGAAVSIEGRKVTNIVMM 203 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA Sbjct: 204 GMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVVPEIIRAGKEIGVMLAISLHA 263 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V + LR+ILVPIN+KYPL +L+DACR+YPGLSNA+RITFEYVMLK +NDS DA L+++ Sbjct: 264 VHDALRDILVPINKKYPLTLLMDACRNYPGLSNAKRITFEYVMLKDVNDSLDDAKQLVQL 323 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKGIPAKINLIPFN WPG Y CSD + I F++ I ++GY+SP+R PRG DILAACGQL Sbjct: 324 LKGIPAKINLIPFNSWPGSHYQCSDWEQIERFADVINQAGYASPVRMPRGRDILAACGQL 383 Query: 366 KSLSKRIPKVPR 377 KS S+R+ K R Sbjct: 384 KSASERLRKSER 395 >gi|304392673|ref|ZP_07374613.1| radical SAM enzyme, Cfr family [Ahrensia sp. R2A130] gi|303295303|gb|EFL89663.1| radical SAM enzyme, Cfr family [Ahrensia sp. R2A130] Length = 423 Score = 508 bits (1309), Expect = e-142, Method: Compositional matrix adjust. Identities = 238/387 (61%), Positives = 300/387 (77%), Gaps = 7/387 (1%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K SLIGM R ++ AL++ GIPQ+ RMR SQ+W+WIY G DF M++I++++R L Sbjct: 26 EKPSLIGMDRADMAAALIEAGIPQKQARMRASQLWQWIYWYGHTDFAAMTNIAKDLRAKL 85 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +F++ PE+V+E IS DGTRKWL RFPAR G PVE+ETVYIPE RGTLC+SSQVGC Sbjct: 86 ADNFTLERPELVEELISTDGTRKWLFRFPARGAGAPVEVETVYIPESDRGTLCISSQVGC 145 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP-------GCEDIEGMVIPSVGR 177 +LTC+FC+TGTQKLVRNLTAEEIL+Q+++AR LGDFP ++ E IP R Sbjct: 146 TLTCTFCHTGTQKLVRNLTAEEILMQLMVARDRLGDFPDKPPVKAAAKNEEEAFIPDGDR 205 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 K+SNIVMMGMGEPL NF++VKK+L IASD+ GLS SKRRITLSTSG VP I R G+EIG Sbjct: 206 KVSNIVMMGMGEPLYNFEHVKKALLIASDNEGLSLSKRRITLSTSGVVPGIERTGDEIGC 265 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 LAISLHA +++LR++LVPIN+KYP+ L+DACR+YPG SN++RITFEYVML G+NDS Sbjct: 266 GLAISLHATNDELRDVLVPINKKYPIAKLLDACRNYPGASNSKRITFEYVMLDGVNDSLA 325 Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 DA L+++LKGIPAKINLIPFNPWPG +Y CS + I F+E + +GY+SP+RTPRG D Sbjct: 326 DAKELVRLLKGIPAKINLIPFNPWPGSQYECSSWEKIEAFAEFVNANGYASPVRTPRGRD 385 Query: 358 ILAACGQLKSLSKRIPKVPRQEMQITG 384 I AACGQLKS S+R+ K R+ + Sbjct: 386 IFAACGQLKSESERMRKKDRETAEFAA 412 >gi|90421104|ref|ZP_01229006.1| radical SAM enzyme, coproporphyrinogen III oxidase [Aurantimonas manganoxydans SI85-9A1] gi|90334596|gb|EAS48376.1| radical SAM enzyme, coproporphyrinogen III oxidase [Aurantimonas manganoxydans SI85-9A1] Length = 413 Score = 506 bits (1302), Expect = e-141, Method: Compositional matrix adjust. Identities = 230/377 (61%), Positives = 298/377 (79%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K SL+G+ R L EAL +G+P + +RMR +Q+W W+YVRG+ DF M++++ +R L Sbjct: 27 EKPSLVGLDRAALGEALSAVGVPDKQIRMRVAQLWHWLYVRGVADFSQMANVAGTLRQAL 86 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 ++ ++I PE+VDE+IS DGTRKWL RFP R G PVEIETVYIPE+ RGTLC+SSQVGC Sbjct: 87 HEAYTIARPEVVDEQISVDGTRKWLFRFPPRGAGRPVEIETVYIPEEGRGTLCISSQVGC 146 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +LTC+FC+TGTQ+LVRNL +EI+ Q+L AR LGD P G ++P+ GR ++N+V+ Sbjct: 147 TLTCTFCHTGTQRLVRNLLPDEIVGQILAARERLGDLPDAATPAGAIVPNGGRLVTNVVL 206 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N+DNV++++++ASD GLS SKRRITLSTSG VP+I + GEE+GV LAISLH Sbjct: 207 MGMGEPLYNYDNVRQAMAVASDGEGLSLSKRRITLSTSGVVPSIVKAGEEMGVSLAISLH 266 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV ++LR+ LVPIN+KYPL+ L+DACR YPGLSNARRITFEYVMLK +NDS DA L++ Sbjct: 267 AVRDELRDELVPINKKYPLKDLLDACRAYPGLSNARRITFEYVMLKDVNDSMADAKELVR 326 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 IL+GIPAKINLIPFNPWPG Y CSD I F++ + ++GY+SPIRTPRG DI AACGQ Sbjct: 327 ILRGIPAKINLIPFNPWPGSAYECSDWDQIERFADYVNQAGYASPIRTPRGRDIFAACGQ 386 Query: 365 LKSLSKRIPKVPRQEMQ 381 LKS S+R+ K R ++ Sbjct: 387 LKSESERLKKSARDRLE 403 >gi|300024847|ref|YP_003757458.1| radical SAM enzyme, Cfr family [Hyphomicrobium denitrificans ATCC 51888] gi|299526668|gb|ADJ25137.1| radical SAM enzyme, Cfr family [Hyphomicrobium denitrificans ATCC 51888] Length = 401 Score = 478 bits (1231), Expect = e-133, Method: Compositional matrix adjust. Identities = 227/376 (60%), Positives = 289/376 (76%), Gaps = 2/376 (0%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K SL G+ R L+EAL G+P++ + MR +Q+W WIYVRGI F+ M+D+S+++R L Sbjct: 20 EKRSLAGLTRARLKEALAAGGVPEKQLNMRVNQLWSWIYVRGITRFEDMTDVSKDLRRQL 79 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG-PVEIETVYIPEKSRGTLCVSSQVG 123 + +++ PEI+ E+IS DGTRKWLLR R P E+ETVYIPE RGTLC+SSQVG Sbjct: 80 DAIYTLDRPEIISEQISVDGTRKWLLRLAKRGHEARPPEVETVYIPESDRGTLCISSQVG 139 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED-IEGMVIPSVGRKISNI 182 C+LTCSFC+TGTQ+LVRNL A+EI+ Q++LAR +GD+PG + +G ++P+ RKI+N+ Sbjct: 140 CTLTCSFCHTGTQRLVRNLEAQEIVGQIMLARDRIGDWPGAKGPDDGRLLPASERKITNV 199 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 V+MGMGEPL NFDNVK ++ +ASD GL+ SKRRITLSTSG VP I R GEE MLAIS Sbjct: 200 VLMGMGEPLYNFDNVKAAMEVASDGDGLALSKRRITLSTSGVVPEIPRWGEEADTMLAIS 259 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA ++ LR+ LVPINRKYP+ L+ ACR YPGLSNARRITFEYVMLKG+NDS +A L Sbjct: 260 LHATNDALRDELVPINRKYPIAELMQACRDYPGLSNARRITFEYVMLKGVNDSLAEARAL 319 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +K+L GIPAKINLIPFNPWP Y CSD + I F+E + R+GY+SP+RTPRG DILAAC Sbjct: 320 VKLLAGIPAKINLIPFNPWPNTRYECSDWETIERFAEVVNRAGYASPVRTPRGRDILAAC 379 Query: 363 GQLKSLSKRIPKVPRQ 378 GQL+S S R+ R+ Sbjct: 380 GQLRSESLRLSASERR 395 >gi|312114859|ref|YP_004012455.1| radical SAM enzyme, Cfr family [Rhodomicrobium vannielii ATCC 17100] gi|311219988|gb|ADP71356.1| radical SAM enzyme, Cfr family [Rhodomicrobium vannielii ATCC 17100] Length = 412 Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust. Identities = 228/371 (61%), Positives = 284/371 (76%), Gaps = 6/371 (1%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SL GM R EL AL + G+P +MR +Q+W W Y RG DF +++I++ +R L+ Sbjct: 29 KPSLAGMTRPELMAALAEAGVPANQAKMRAAQLWNWTYARGATDFMALTNIAKSLRAELD 88 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRF-PARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 F++ PEI E+IS DGTRKWLLR P+ P EIETVYIPE RGTLC+SSQVGC Sbjct: 89 ARFTLARPEIAAEQISEDGTRKWLLRLAPSHPAERPPEIETVYIPEPDRGTLCISSQVGC 148 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP---GCEDIEGMVIPSVGRKISN 181 +L CSFC+TGTQ+LVRNLTA EI+ Q+L+AR +GD+P G D G IP RKI+N Sbjct: 149 TLNCSFCHTGTQRLVRNLTAAEIVGQILVARDRVGDWPDADGPADRHG--IPESERKITN 206 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 IV+MGMGEPL NF+NVK ++ +A+D+ LSFSKRR+TLSTSG VP + R GEE+GVMLAI Sbjct: 207 IVLMGMGEPLYNFENVKAAVGLATDADALSFSKRRLTLSTSGVVPMMHRAGEEMGVMLAI 266 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHAV +DLR+ LVPINRKYPL+ L+ ACR YPGLSNARR+TFEYVMLKG+NDS +A Sbjct: 267 SLHAVRDDLRDELVPINRKYPLKELLAACRAYPGLSNARRMTFEYVMLKGVNDSVAEAKE 326 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L+++LKGIP+KINLIPFNPWPG Y CSD I F++ + R+GY+SPIRTPRG DI+AA Sbjct: 327 LVRLLKGIPSKINLIPFNPWPGTAYECSDWAQIERFADVVNRAGYASPIRTPRGRDIMAA 386 Query: 362 CGQLKSLSKRI 372 CGQLKS S+++ Sbjct: 387 CGQLKSASEKL 397 >gi|209883455|ref|YP_002287312.1| radical SAM enzyme, Cfr family [Oligotropha carboxidovorans OM5] gi|209871651|gb|ACI91447.1| radical SAM enzyme, Cfr family [Oligotropha carboxidovorans OM5] Length = 404 Score = 475 bits (1222), Expect = e-132, Method: Compositional matrix adjust. Identities = 227/368 (61%), Positives = 283/368 (76%), Gaps = 6/368 (1%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K SLIG+ R+EL L ++G+ + +MR Q+W W+YVRG R F+ MS++S+++R L Sbjct: 28 EKPSLIGLSRDELMARLGELGVADKQRKMRAQQLWHWMYVRGARSFEEMSNVSKDMRAQL 87 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 HF++ PE+V E++S DGTRKWLLR P +G E+E VYIPE RGTLCVSSQVGC Sbjct: 88 AAHFTVDRPEVVAEQVSNDGTRKWLLRMPGDGVGRAHEVECVYIPETDRGTLCVSSQVGC 147 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L CSFC+TGTQ+LVRNLTA EI+ QV++AR L D+ E P+ R ++N+VM Sbjct: 148 TLNCSFCHTGTQRLVRNLTAGEIVGQVMVARDRLNDWVDRE------TPNGNRLVTNVVM 201 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFD V+ +L I SD G+ S+RRITLSTSG VPNIAR+GEE GVMLAISLH Sbjct: 202 MGMGEPLYNFDAVRDALKIMSDGEGIGLSRRRITLSTSGVVPNIARIGEETGVMLAISLH 261 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV ++LRN LVP+NRKYP+ L+DACR+YPG SNARRITFEYVMLKG+NDS DA L+K Sbjct: 262 AVRDELRNELVPLNRKYPIAQLLDACRNYPGASNARRITFEYVMLKGVNDSLDDAKLLVK 321 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGIPAKINLIPFNPWPG Y CSD + I FSE + +GYSSP+RTPRG DILAACGQ Sbjct: 322 LLKGIPAKINLIPFNPWPGSVYECSDWEQIEQFSEYVFNAGYSSPVRTPRGRDILAACGQ 381 Query: 365 LKSLSKRI 372 LKS ++++ Sbjct: 382 LKSETEKL 389 >gi|158422376|ref|YP_001523668.1| hypothetical protein AZC_0752 [Azorhizobium caulinodans ORS 571] gi|205829661|sp|A8IQ73|RLMN_AZOC5 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|158329265|dbj|BAF86750.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571] Length = 406 Score = 472 bits (1214), Expect = e-131, Method: Compositional matrix adjust. Identities = 222/367 (60%), Positives = 287/367 (78%), Gaps = 2/367 (0%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 SL G+ RE+L AL IG+P+R +MR +Q+W WIY+RG DF M+++S+ +R L +H Sbjct: 24 SLAGLDREKLGLALAAIGVPERERKMRVNQLWHWIYLRGATDFAEMTNVSKTLRTQLAEH 83 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGG-PVEIETVYIPEKSRGTLCVSSQVGCSL 126 +S+ PEIV E++S DGTRKWLLR PA G P E+E VYIPE+ RGTLCVSSQVGC+L Sbjct: 84 YSLARPEIVVEQVSQDGTRKWLLRLPAETPGERPHEVEAVYIPERDRGTLCVSSQVGCTL 143 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIVMM 185 C+FC+TGTQ+LVRNLTA EI+ QVL+AR LGD+PG E G +P+ G R ++NIV M Sbjct: 144 NCAFCHTGTQRLVRNLTAAEIVAQVLVARDRLGDYPGRERAVGPGLPTEGDRLVTNIVFM 203 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL +D+V +++ I +D GL KRRIT+STSG VP I ++G E+G MLAISLHA Sbjct: 204 GMGEPLYAYDSVAEAIEILADGDGLGLGKRRITVSTSGVVPEIEKLGREVGPMLAISLHA 263 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V +DLR++LVPIN+KYP+ L++ACR YP SNA+RITFEYVMLKG+NDSP DA L+K+ Sbjct: 264 VRDDLRDVLVPINKKYPIAELMEACRTYPAASNAKRITFEYVMLKGVNDSPADARALVKL 323 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G+PAKINLIPFNPWPG +Y CSD + I FS+ + R+GY+SP+RTPRG DILAACGQL Sbjct: 324 LEGVPAKINLIPFNPWPGTKYECSDWETIEKFSDIVFRAGYASPVRTPRGRDILAACGQL 383 Query: 366 KSLSKRI 372 KS ++++ Sbjct: 384 KSETEKL 390 >gi|296446886|ref|ZP_06888822.1| radical SAM enzyme, Cfr family [Methylosinus trichosporium OB3b] gi|296255561|gb|EFH02652.1| radical SAM enzyme, Cfr family [Methylosinus trichosporium OB3b] Length = 386 Score = 468 bits (1204), Expect = e-130, Method: Compositional matrix adjust. Identities = 228/370 (61%), Positives = 276/370 (74%), Gaps = 3/370 (0%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SL G R EL EAL I P+R +RMR +Q+W WIY RG RDF MS++S+ VR L Sbjct: 8 KPSLAGATRAELAEALRAIDTPEREIRMRVAQLWHWIYFRGARDFADMSNVSKIVRGKLA 67 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRF-PARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F + PE+V E++S DGTRKWLLR P EIE VYIPE RGTLCVSSQVGC Sbjct: 68 ERFGLALPEVVAEQVSTDGTRKWLLRLDPVDAADKGAEIECVYIPESDRGTLCVSSQVGC 127 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG--RKISNI 182 +L CSFC+TGTQKLVRNL+ EI+ Q+L+AR LGDFPG E ++PS R +SNI Sbjct: 128 TLNCSFCHTGTQKLVRNLSTREIIAQLLVARMRLGDFPGLEPPTDGLVPSGPDVRAVSNI 187 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 V MGMGEPL N + V+ ++ I SD GLS SKRRIT+STSG VP I R+G E G MLAIS Sbjct: 188 VFMGMGEPLYNLEQVENAIEILSDGDGLSLSKRRITVSTSGVVPQIERLGAECGPMLAIS 247 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHAV ++LRN LVP+N+KYP+ L+DACR YPG SNARRITFEYVMLKG+NDSP +A L Sbjct: 248 LHAVRDELRNELVPLNKKYPIRQLLDACRDYPGASNARRITFEYVMLKGVNDSPAEAREL 307 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +++LKGIPAKINLIPFNPWPG Y CSD + I FS+ + +GY+SP+RTPRG DILAAC Sbjct: 308 VRLLKGIPAKINLIPFNPWPGAPYECSDWETIERFSDIVFNAGYASPVRTPRGRDILAAC 367 Query: 363 GQLKSLSKRI 372 GQLKS ++++ Sbjct: 368 GQLKSETEKL 377 >gi|115522068|ref|YP_778979.1| radical SAM protein [Rhodopseudomonas palustris BisA53] gi|122298191|sp|Q07VN5|RLMN_RHOP5 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|115516015|gb|ABJ03999.1| radical SAM enzyme, Cfr family [Rhodopseudomonas palustris BisA53] Length = 403 Score = 468 bits (1203), Expect = e-130, Method: Compositional matrix adjust. Identities = 234/385 (60%), Positives = 283/385 (73%), Gaps = 14/385 (3%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 L K SLIG+ R EL E L IG+ +MR Q+W WIYVRG DF M+ IS+E+R Sbjct: 20 LAKPSLIGLSRPELMERLGGIGVAAAQRKMRAQQLWHWIYVRGATDFAQMTSISKELRAQ 79 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPV-EIETVYIPEKSRGTLCVSSQV 122 L +HF++ PE+V E+IS DGTRKWLLR P+ G E+E VYIPE RGTLCVSSQV Sbjct: 80 LAEHFTVDRPEVVTEQISNDGTRKWLLRLPSGQAGERAHEVECVYIPETDRGTLCVSSQV 139 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV------G 176 GC+L CSFC+TGTQKLVRNLTA EI+ QV++A+ LGD+P M + S Sbjct: 140 GCTLNCSFCHTGTQKLVRNLTAGEIVGQVMVAKDRLGDWP-------MAVASTQDAGENN 192 Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236 R I+N+VMMGMGEPL NF+ V+ +L I SD+ G+ S+RRITLSTSG VPNI R G+EIG Sbjct: 193 RLITNVVMMGMGEPLYNFEAVRDALLIVSDNEGIGLSRRRITLSTSGVVPNIFRTGDEIG 252 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 VMLAISLHAV ++LRN LVP+N+KYPL+ L+ ACR YPG SNARRITFEYVMLKG+NDS Sbjct: 253 VMLAISLHAVRDELRNELVPLNKKYPLKELLQACRDYPGASNARRITFEYVMLKGVNDSL 312 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 DA L+K+LKG+PAKINLIPFNPWPG Y CSD I FSE I +GYSSP+RTPRG Sbjct: 313 DDAKLLVKLLKGVPAKINLIPFNPWPGSAYQCSDWDQIEKFSEYIFNAGYSSPVRTPRGR 372 Query: 357 DILAACGQLKSLSKRIPKVPRQEMQ 381 DILAACGQLKS ++++ R ++ Sbjct: 373 DILAACGQLKSETEKLSARERDALR 397 >gi|182677752|ref|YP_001831898.1| radical SAM protein [Beijerinckia indica subsp. indica ATCC 9039] gi|205829669|sp|B2IGZ5|RLMN_BEII9 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|182633635|gb|ACB94409.1| radical SAM enzyme, Cfr family [Beijerinckia indica subsp. indica ATCC 9039] Length = 391 Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust. Identities = 223/369 (60%), Positives = 286/369 (77%), Gaps = 6/369 (1%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 SL+G REEL +AL IG+P+R +RMRT+Q+W WIY GIR F M ++ + +R L H Sbjct: 15 SLLGATREELGDALAAIGVPEREIRMRTAQVWHWIYFHGIRSFDTMLNVGKGLRTTLAAH 74 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFP---ARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +S+ P++V E++S DGTRKWL+R P A+ G E+E VYIPE RGTLC+SSQVGC Sbjct: 75 YSLERPQVVSEQVSVDGTRKWLIRLPPVDAQDRGA--EVECVYIPESDRGTLCISSQVGC 132 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIV 183 +LTCSFC+TGTQKLVRNL+A EI+ Q+++AR LGDFPG + ++P+ G R I+NIV Sbjct: 133 TLTCSFCHTGTQKLVRNLSAREIVSQLVVAREKLGDFPGLVPPKDGLLPTEGNRPITNIV 192 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MGMGEPL NFDNV+K++S+ SD GLS S+RRIT+ST+G VP + +G E G MLA+SL Sbjct: 193 FMGMGEPLYNFDNVRKAVSVLSDGEGLSLSRRRITVSTAGVVPQMEALGREAGSMLAVSL 252 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HAV +DLR+ LVP+N+KYP++ L++ACR YPG SNARRITFEYVMLK INDSP +A LI Sbjct: 253 HAVRDDLRDKLVPLNKKYPIKTLLEACRTYPGASNARRITFEYVMLKDINDSPAEARELI 312 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LKGIPAKINLIPFNPWPG Y CSD I FS+ + +GY+SP+RTPRG DILAACG Sbjct: 313 RLLKGIPAKINLIPFNPWPGAPYDCSDWDRIERFSDIVFNAGYASPVRTPRGRDILAACG 372 Query: 364 QLKSLSKRI 372 QLKS ++++ Sbjct: 373 QLKSETEKL 381 >gi|299133126|ref|ZP_07026321.1| radical SAM enzyme, Cfr family [Afipia sp. 1NLS2] gi|298593263|gb|EFI53463.1| radical SAM enzyme, Cfr family [Afipia sp. 1NLS2] Length = 403 Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust. Identities = 222/367 (60%), Positives = 283/367 (77%), Gaps = 6/367 (1%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + SLIG+ R EL L ++G+P++ +MR Q+W W+YVRG + F M+++S+++R L Sbjct: 28 RPSLIGLSRAELMACLGELGVPEKQRKMRAQQLWHWMYVRGAQTFADMTNVSKDMRTQLE 87 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F++ PE+V E+IS DGTRKWLLR P +G E+E VYIPE RGTLCVSSQVGC+ Sbjct: 88 ARFTVDRPEVVAEQISNDGTRKWLLRLPGDGVGRAHEVECVYIPETDRGTLCVSSQVGCT 147 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC+TGTQ+LVRNLTA EI+ QV++AR L D+ E P+ R ++N+VMM Sbjct: 148 LNCSFCHTGTQRLVRNLTAGEIVGQVMVARDRLNDWVDRE------TPNGNRLVTNVVMM 201 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFD V+ +L+I D+ G++ S+RRITLSTSG VPNI R+GEE GVMLAISLHA Sbjct: 202 GMGEPLYNFDAVRDALNIVMDNEGIALSRRRITLSTSGVVPNIGRMGEETGVMLAISLHA 261 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V ++LRN LVP+N+KYPL L+DACR+YPG SN+RRITFEYVMLKG+NDS DA L+K+ Sbjct: 262 VRDELRNELVPLNKKYPLAQLLDACRNYPGASNSRRITFEYVMLKGVNDSLDDAKLLVKL 321 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKGIPAKINLIPFNPWPG +Y CSD + I FSE + +GYSSP+RTPRG DILAACGQL Sbjct: 322 LKGIPAKINLIPFNPWPGSKYECSDWEQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQL 381 Query: 366 KSLSKRI 372 KS ++++ Sbjct: 382 KSETEKL 388 >gi|90421563|ref|YP_529933.1| hypothetical protein RPC_0035 [Rhodopseudomonas palustris BisB18] gi|122995691|sp|Q21DC2|RLMN_RHOPB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|90103577|gb|ABD85614.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18] Length = 399 Score = 465 bits (1196), Expect = e-129, Method: Compositional matrix adjust. Identities = 228/377 (60%), Positives = 280/377 (74%), Gaps = 7/377 (1%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + SLIG+ R EL EAL IG+ +MR Q+W W+Y RG+++F M+ IS+E+R L Sbjct: 23 RPSLIGLSRAELAEALGGIGVAASQRKMRAQQLWHWMYFRGVQEFAEMTSISKEMRSQLA 82 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPV-EIETVYIPEKSRGTLCVSSQVGC 124 +HF++ PE+V E+IS DGTRKWLLR P+ G E+E VYIPE RGTLCVSSQVGC Sbjct: 83 EHFTVARPEVVAEQISNDGTRKWLLRLPSGVSGEKAHEVECVYIPETDRGTLCVSSQVGC 142 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L CSFC+TGTQKLVRNLTA EI+ QV++AR L D+ E P+ R ++N+VM Sbjct: 143 TLNCSFCHTGTQKLVRNLTAGEIVGQVMVARDRLNDWADRE------TPNGNRLVTNVVM 196 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFD V+ +L I SD+ G+ S+RR+TLSTSG VPNI R GEEIGVMLAISLH Sbjct: 197 MGMGEPLYNFDAVRDALLIVSDNEGIGISRRRVTLSTSGVVPNIVRAGEEIGVMLAISLH 256 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV ++LR+ LVP+NRKYPL L+ ACR YPG SNARRITFEYVMLK +NDS DA L+K Sbjct: 257 AVRDELRDELVPLNRKYPLAELLQACRDYPGASNARRITFEYVMLKDVNDSLDDAKLLVK 316 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L GIPAKINLIPFNPWPG Y CSD I FSE I +GYSSP+RTPRG DILAACGQ Sbjct: 317 LLSGIPAKINLIPFNPWPGTAYKCSDWDQIEKFSEYIFNAGYSSPVRTPRGRDILAACGQ 376 Query: 365 LKSLSKRIPKVPRQEMQ 381 LKS ++++ R+ ++ Sbjct: 377 LKSETEKLTAREREALR 393 >gi|205829897|sp|Q6NCS3|RLMN_RHOPA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase Length = 399 Score = 464 bits (1194), Expect = e-129, Method: Compositional matrix adjust. Identities = 227/368 (61%), Positives = 281/368 (76%), Gaps = 7/368 (1%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIG+ R +L + L +G+ +MR Q+W W+YVRG RDF M+++S+E+R +L Sbjct: 23 KPSLIGLSRAQLCDRLGDVGVAPPQRKMRAQQLWHWMYVRGARDFSEMTNVSKEMRAMLA 82 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPV-EIETVYIPEKSRGTLCVSSQVGC 124 +HF++ PE+V E+IS DGTRKWLLR P+ G E+E VYIPE RGTLCVSSQVGC Sbjct: 83 EHFTVDRPEVVAEQISADGTRKWLLRLPSGGDGQKAHEVECVYIPETDRGTLCVSSQVGC 142 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC+TGTQ+LVRNLTA EI+ QV++AR LGD+ E P+ R I+NIVM Sbjct: 143 TLNCAFCHTGTQRLVRNLTAGEIVGQVMVARDRLGDWIDRE------TPNGNRLITNIVM 196 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFD V+ +L I SD+ G+ S+RRITLSTSG VPNI R G+EIGVMLAISLH Sbjct: 197 MGMGEPLYNFDAVRDALLIVSDNEGIGISRRRITLSTSGVVPNIKRTGDEIGVMLAISLH 256 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV ++LR+ LVP+NRKYPL+ L+ ACR YPG SNARRITFEYVMLKG+NDS DA L++ Sbjct: 257 AVRDELRDELVPLNRKYPLKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDARKLVQ 316 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGIPAKINLIPFNPWPG Y CSD I FSE + +GYSSP+RTPRG DILAACGQ Sbjct: 317 LLKGIPAKINLIPFNPWPGSNYECSDWDQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 376 Query: 365 LKSLSKRI 372 LKS ++++ Sbjct: 377 LKSETEKL 384 >gi|39933473|ref|NP_945749.1| hypothetical protein RPA0396 [Rhodopseudomonas palustris CGA009] gi|39647319|emb|CAE25840.1| Cfr family protein [Rhodopseudomonas palustris CGA009] Length = 424 Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust. Identities = 227/368 (61%), Positives = 281/368 (76%), Gaps = 7/368 (1%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIG+ R +L + L +G+ +MR Q+W W+YVRG RDF M+++S+E+R +L Sbjct: 48 KPSLIGLSRAQLCDRLGDVGVAPPQRKMRAQQLWHWMYVRGARDFSEMTNVSKEMRAMLA 107 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPV-EIETVYIPEKSRGTLCVSSQVGC 124 +HF++ PE+V E+IS DGTRKWLLR P+ G E+E VYIPE RGTLCVSSQVGC Sbjct: 108 EHFTVDRPEVVAEQISADGTRKWLLRLPSGGDGQKAHEVECVYIPETDRGTLCVSSQVGC 167 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC+TGTQ+LVRNLTA EI+ QV++AR LGD+ E P+ R I+NIVM Sbjct: 168 TLNCAFCHTGTQRLVRNLTAGEIVGQVMVARDRLGDWIDRE------TPNGNRLITNIVM 221 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFD V+ +L I SD+ G+ S+RRITLSTSG VPNI R G+EIGVMLAISLH Sbjct: 222 MGMGEPLYNFDAVRDALLIVSDNEGIGISRRRITLSTSGVVPNIKRTGDEIGVMLAISLH 281 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV ++LR+ LVP+NRKYPL+ L+ ACR YPG SNARRITFEYVMLKG+NDS DA L++ Sbjct: 282 AVRDELRDELVPLNRKYPLKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDARKLVQ 341 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGIPAKINLIPFNPWPG Y CSD I FSE + +GYSSP+RTPRG DILAACGQ Sbjct: 342 LLKGIPAKINLIPFNPWPGSNYECSDWDQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 401 Query: 365 LKSLSKRI 372 LKS ++++ Sbjct: 402 LKSETEKL 409 >gi|148251858|ref|YP_001236443.1| putative pyruvate formate lyase activating enzyme 2 (yfgB) [Bradyrhizobium sp. BTAi1] gi|205829672|sp|A5E8P3|RLMN_BRASB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|146404031|gb|ABQ32537.1| 23S rRNA m(2)A-2503 methyltransferase [Bradyrhizobium sp. BTAi1] Length = 403 Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust. Identities = 229/377 (60%), Positives = 279/377 (74%), Gaps = 7/377 (1%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIG+ R EL L +G+P+R +MR Q+W WIY RG R F MS +S++ R L Sbjct: 27 KPSLIGLSRAELAARLGDVGVPERQQKMRVQQLWHWIYFRGARSFDEMSSVSKDTRTALA 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPA-RCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F++ PE+V E+IS DGTRKWLLR P+ + E+E VYIPE RGTLCVSSQVGC Sbjct: 87 ERFTVDRPEVVAEQISNDGTRKWLLRLPSGDDLQKAHEVECVYIPETDRGTLCVSSQVGC 146 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC+TGTQ+LVRNLTA EI+ QV++AR L D+ E P R I+NIVM Sbjct: 147 TLNCAFCHTGTQRLVRNLTAGEIVGQVMVARDRLNDWADRE------TPHGNRLITNIVM 200 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFD V+ +L I SD+ G+ S+RRITLSTSG VPNI R GEEIGVMLAISLH Sbjct: 201 MGMGEPLYNFDAVRDALLIVSDNEGIGISRRRITLSTSGVVPNIKRAGEEIGVMLAISLH 260 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV ++LR+ LVP+NRKYP+ L+ ACR YPG SNARRITFEYVMLKG+NDS DA L+K Sbjct: 261 AVRDELRDELVPLNRKYPIAELLQACRDYPGASNARRITFEYVMLKGVNDSLDDARLLVK 320 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGIPAKINLIPFNPWPG Y CSD + I FSE + +GYSSP+RTPRG DILAACGQ Sbjct: 321 LLKGIPAKINLIPFNPWPGSAYECSDWEQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 380 Query: 365 LKSLSKRIPKVPRQEMQ 381 LKS ++++ RQ ++ Sbjct: 381 LKSETEKLSARERQALR 397 >gi|323136337|ref|ZP_08071419.1| radical SAM enzyme, Cfr family [Methylocystis sp. ATCC 49242] gi|322398411|gb|EFY00931.1| radical SAM enzyme, Cfr family [Methylocystis sp. ATCC 49242] Length = 392 Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust. Identities = 225/371 (60%), Positives = 278/371 (74%), Gaps = 3/371 (0%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K SL GM R E+ + L G+P+R +RMR SQ+W WIY RG RDF M +IS+ +R L Sbjct: 13 EKPSLAGMTRAEIADTLRAFGLPEREIRMRVSQLWHWIYFRGARDFGEMLNISKSLRLTL 72 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRF-PARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + F + +PEIV+E++S DGTRKWLLR P E+E VYIPE RGTLCVSSQVG Sbjct: 73 DGAFGLRHPEIVEEQVSVDGTRKWLLRLAPVDAQDKGAEVECVYIPESDRGTLCVSSQVG 132 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG--RKISN 181 C+L CSFC+TGTQKLVRNLT+ EI+ Q+L+AR LGDFP E ++PS R +SN Sbjct: 133 CTLNCSFCHTGTQKLVRNLTSAEIIGQLLVARQRLGDFPDRERPTDGLVPSGEGVRAVSN 192 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 IV MGMGEPL N DNV ++ + +D GLS SKRRIT+STSG VP I R+G E G LAI Sbjct: 193 IVFMGMGEPLYNIDNVMAAIEVMADGDGLSLSKRRITVSTSGVVPQIERLGAECGPALAI 252 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHAV +DLRN LVP+NRKYP++ L+ ACR YPG SNARRITFEYVMLKG+NDSP +A Sbjct: 253 SLHAVRDDLRNELVPLNRKYPIKELLQACRDYPGASNARRITFEYVMLKGVNDSPAEARE 312 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L+++LKG+PAKINLIPFNPWPG Y CSD + I FS+ + +GY+SP+RTPRG DILAA Sbjct: 313 LVRLLKGVPAKINLIPFNPWPGAPYECSDWETIERFSDIVFNAGYASPVRTPRGRDILAA 372 Query: 362 CGQLKSLSKRI 372 CGQLKS ++++ Sbjct: 373 CGQLKSETEKL 383 >gi|192288832|ref|YP_001989437.1| radical SAM enzyme, Cfr family [Rhodopseudomonas palustris TIE-1] gi|254807199|sp|B3Q9D7|RLMN_RHOPT RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|192282581|gb|ACE98961.1| radical SAM enzyme, Cfr family [Rhodopseudomonas palustris TIE-1] Length = 399 Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust. Identities = 227/368 (61%), Positives = 280/368 (76%), Gaps = 7/368 (1%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIG+ R +L + L +G+ +MR Q+W W+YVRG RDF M+++S+E+R L Sbjct: 23 KPSLIGLSRAQLCDRLGDVGVAPPQRKMRAQQLWHWMYVRGARDFSEMTNVSKEMRATLA 82 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPV-EIETVYIPEKSRGTLCVSSQVGC 124 +HF++ PE+V E+IS DGTRKWLLR P+ G E+E VYIPE RGTLCVSSQVGC Sbjct: 83 EHFTVDRPEVVAEQISADGTRKWLLRLPSGGDGQKAHEVECVYIPETDRGTLCVSSQVGC 142 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC+TGTQ+LVRNLTA EI+ QV++AR LGD+ E P+ R I+NIVM Sbjct: 143 TLNCAFCHTGTQRLVRNLTAGEIVGQVMVARDRLGDWIDRE------TPNGNRLITNIVM 196 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFD V+ +L I SD+ G+ S+RRITLSTSG VPNI R G+EIGVMLAISLH Sbjct: 197 MGMGEPLYNFDAVRDALLIVSDNEGIGISRRRITLSTSGVVPNIKRTGDEIGVMLAISLH 256 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV ++LR+ LVP+NRKYPL+ L+ ACR YPG SNARRITFEYVMLKG+NDS DA L++ Sbjct: 257 AVRDELRDELVPLNRKYPLKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDARKLVQ 316 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGIPAKINLIPFNPWPG Y CSD I FSE + +GYSSP+RTPRG DILAACGQ Sbjct: 317 LLKGIPAKINLIPFNPWPGSNYECSDWDQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 376 Query: 365 LKSLSKRI 372 LKS ++++ Sbjct: 377 LKSETEKL 384 >gi|86747220|ref|YP_483716.1| hypothetical protein RPB_0093 [Rhodopseudomonas palustris HaA2] gi|123293381|sp|Q2J405|RLMN_RHOP2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|86570248|gb|ABD04805.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2] Length = 399 Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust. Identities = 225/368 (61%), Positives = 281/368 (76%), Gaps = 7/368 (1%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIG+ R EL E L IG+ +MR Q+W W+YVRG RDF M+++S+E+R L Sbjct: 23 KPSLIGLSRAELAERLGAIGVAPAQRKMRAQQLWHWMYVRGARDFAEMTNVSKEMRATLA 82 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPA-RCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +H ++ PE+V E+IS DGTRKWLLR P+ + E+E VYIPE RGTLCVSSQVGC Sbjct: 83 EHCTVDRPEVVAEQISADGTRKWLLRLPSGDDVQKAHEVECVYIPETDRGTLCVSSQVGC 142 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L CSFC+TGTQ+LVRNLTA EI+ QV++AR LGD+ E P+ R ++N+VM Sbjct: 143 TLNCSFCHTGTQRLVRNLTAGEIVGQVMVARDRLGDWIDRE------TPNGNRLVTNVVM 196 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NF+ V+ +L I +D+ G+ S+RR+TLSTSG VPNIAR G+EIGVMLAISLH Sbjct: 197 MGMGEPLYNFEAVRDALLIVTDNEGIGISRRRVTLSTSGVVPNIARTGDEIGVMLAISLH 256 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV ++LR+ LVP+NRKYPL+ L+ ACR YPG SNARRITFEYVMLKG+NDS DA L++ Sbjct: 257 AVRDELRDELVPLNRKYPLKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDARRLVQ 316 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGIPAKINLIPFNPWPG +Y CSD I FSE + +GYSSP+RTPRG DILAACGQ Sbjct: 317 LLKGIPAKINLIPFNPWPGSKYECSDWDQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 376 Query: 365 LKSLSKRI 372 LKS ++++ Sbjct: 377 LKSETEKL 384 >gi|298293307|ref|YP_003695246.1| radical SAM enzyme, Cfr family [Starkeya novella DSM 506] gi|296929818|gb|ADH90627.1| radical SAM enzyme, Cfr family [Starkeya novella DSM 506] Length = 409 Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust. Identities = 217/369 (58%), Positives = 283/369 (76%), Gaps = 2/369 (0%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + SL G+ R L EAL +IG+ +R RMR +Q+W WIY+RG+ F M+++ + +R L Sbjct: 25 RRSLAGLDRAGLAEALAEIGVSEREQRMRVAQLWHWIYLRGVTSFDEMTNVGKGLRAKLE 84 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG-PVEIETVYIPEKSRGTLCVSSQVGC 124 + F++ PE+V E++S DGTRKWLLR P G P ++E VYIPE RGTLCVSSQVGC Sbjct: 85 EAFTLARPEVVVEQVSNDGTRKWLLRLPPDIAGDKPHDVEMVYIPESDRGTLCVSSQVGC 144 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIV 183 +L CSFC+TGTQ+LVRNLTA EI+ QV++AR LGD+PG E G +P+ G R ++NIV Sbjct: 145 TLNCSFCHTGTQRLVRNLTAAEIVAQVMVARDRLGDYPGQERAVGPGLPTEGDRLVTNIV 204 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MGMGEPL +D+V +++ + +D GL KRRIT+STSG VP I ++G E+G MLAISL Sbjct: 205 FMGMGEPLYAYDSVARAIEVLADGEGLGIGKRRITVSTSGVVPEIEKLGREVGPMLAISL 264 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HAV ++LR++LVPIN+KYPL+ L+DACR YP SNA+RITFEYVMLKG+NDSP DA L+ Sbjct: 265 HAVRDELRDVLVPINKKYPLKDLLDACRTYPAASNAKRITFEYVMLKGVNDSPADAKALV 324 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++L GIPAKINLIPFNPWPG +Y CSD + I FS+ + R+GYSSP+RTPRG DILAACG Sbjct: 325 RLLAGIPAKINLIPFNPWPGTKYECSDWETIERFSDIVFRAGYSSPVRTPRGRDILAACG 384 Query: 364 QLKSLSKRI 372 QLKS ++++ Sbjct: 385 QLKSETEKL 393 >gi|217979092|ref|YP_002363239.1| radical SAM enzyme, Cfr family [Methylocella silvestris BL2] gi|254807188|sp|B8EIR0|RLMN_METSB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|217504468|gb|ACK51877.1| radical SAM enzyme, Cfr family [Methylocella silvestris BL2] Length = 399 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 219/366 (59%), Positives = 278/366 (75%), Gaps = 1/366 (0%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 SL G+ R+ L ALL+IG P+R +RMRT+Q+W WIY RG F M ++S+ +R L + Sbjct: 24 SLAGLTRDGLAAALLEIGAPERELRMRTAQLWHWIYHRGAGSFDDMLNVSKVLRTQLAEK 83 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRF-PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 F++ P+IV E++S DGTRKWL+RF P+ E+E VYIP+ RGTLCVSSQVGC+L Sbjct: 84 FTLARPQIVTEQVSTDGTRKWLIRFAPSAESDRLAEVECVYIPDVDRGTLCVSSQVGCTL 143 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 TCSFC+TGTQK VRNLTA+EI+ Q+++AR +GDFPG +G S R ++NIV MG Sbjct: 144 TCSFCHTGTQKFVRNLTAQEIIAQLIIARDRIGDFPGLAPRDGKGSNSGSRLVTNIVFMG 203 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N DNV ++S+ SD GLS S+RRIT+ST+G VP + +GE+ G MLAISLHAV Sbjct: 204 MGEPLYNLDNVVDAVSVLSDGDGLSLSRRRITVSTAGVVPKLPELGEKTGAMLAISLHAV 263 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++LRN LVP+N+KYP+ L+ ACR YPG SNARRITFEYVMLKGINDSP DA L+++L Sbjct: 264 RDELRNTLVPLNKKYPIAALLQACRDYPGASNARRITFEYVMLKGINDSPSDARELVRLL 323 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 KGIPAKINLIPFNPWPG Y CSD I FS+ + +GY+SP+RTPRG DILAACGQLK Sbjct: 324 KGIPAKINLIPFNPWPGTAYECSDDAVIEKFSDIVFNAGYASPVRTPRGRDILAACGQLK 383 Query: 367 SLSKRI 372 S ++++ Sbjct: 384 SETEKL 389 >gi|154244355|ref|YP_001415313.1| radical SAM protein [Xanthobacter autotrophicus Py2] gi|205829935|sp|A7ICB3|RLMN_XANP2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|154158440|gb|ABS65656.1| radical SAM enzyme, Cfr family [Xanthobacter autotrophicus Py2] Length = 414 Score = 462 bits (1188), Expect = e-128, Method: Compositional matrix adjust. Identities = 223/367 (60%), Positives = 282/367 (76%), Gaps = 2/367 (0%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 SLIG+ R++L AL IG+ RMR +Q+W WIY+RG DF M+++S+ +R L Sbjct: 32 SLIGLDRDKLGAALDAIGVRGSDRRMRVNQLWHWIYLRGATDFAEMTNVSKHLRADLAAA 91 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGG-PVEIETVYIPEKSRGTLCVSSQVGCSL 126 +S+ PEIV E++S DGTRKWLLRFPA G P +IETVYIPE RGTLCVSSQVGC+L Sbjct: 92 YSLARPEIVMEQVSQDGTRKWLLRFPADHPGERPHDIETVYIPESDRGTLCVSSQVGCTL 151 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIVMM 185 CSFC+TGTQ+LVRNLTA EI+ QV++AR LGD+PG + G +P+ G R ++NIV M Sbjct: 152 NCSFCHTGTQRLVRNLTAAEIVAQVMVARDRLGDYPGRDRATGPGLPTEGDRLVTNIVFM 211 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL +D+VK+++ SD GL KRRIT+STSG VP I R+G E+G MLAISLHA Sbjct: 212 GMGEPLYAYDSVKEAIETLSDGDGLGLGKRRITVSTSGVVPEIERLGAEVGPMLAISLHA 271 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V + LR+ LVPIN+KYP+ L++ACR YP SNA+RITFEYVMLKG+NDSP DA L+K+ Sbjct: 272 VRDKLRDELVPINKKYPIAELMEACRTYPAASNAKRITFEYVMLKGVNDSPADARALVKL 331 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G+PAKINLIPFNPWPG +Y CSD + I FS+ + R+GY+SP+RTPRG DILAACGQL Sbjct: 332 LEGVPAKINLIPFNPWPGTQYECSDWETIERFSDIVFRAGYASPVRTPRGRDILAACGQL 391 Query: 366 KSLSKRI 372 KS S+++ Sbjct: 392 KSESEKL 398 >gi|85714487|ref|ZP_01045475.1| hypothetical protein NB311A_16087 [Nitrobacter sp. Nb-311A] gi|85698934|gb|EAQ36803.1| hypothetical protein NB311A_16087 [Nitrobacter sp. Nb-311A] Length = 423 Score = 462 bits (1188), Expect = e-128, Method: Compositional matrix adjust. Identities = 224/377 (59%), Positives = 277/377 (73%), Gaps = 7/377 (1%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIG+ R E+ E L IG+P+ RMR Q+W W+YVRG + F M+ +S+++ L Sbjct: 47 KPSLIGLSRAEIAERLAAIGVPREQRRMRVQQLWHWMYVRGAQSFSEMTSVSKDMHTELE 106 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPA-RCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +H ++ PE+V E+IS DGTRKWLLR P+ + P E+E VYIPE RGTLC+SSQVGC Sbjct: 107 KHVTVDRPEVVAEQISSDGTRKWLLRLPSGNDLEKPHEVECVYIPETDRGTLCISSQVGC 166 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L CSFC+TGTQ+LVRNLTA EI+ Q+++AR L D+ E P R ++NIVM Sbjct: 167 TLNCSFCHTGTQRLVRNLTAGEIVGQIMVARDRLNDWADRE------TPHGNRLVTNIVM 220 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFD V+ L I +D+ G+ SKRRITLSTSG VPNI R GEEIGVMLAISLH Sbjct: 221 MGMGEPLYNFDAVRDGLLIVADNEGIGISKRRITLSTSGVVPNIVRAGEEIGVMLAISLH 280 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV ++LRN LVP+NRKYP+ L+ ACR YP SNA+RITFEYVMLKG+NDS DA L+K Sbjct: 281 AVRDELRNELVPLNRKYPIAELMQACRDYPAASNAKRITFEYVMLKGVNDSLEDAKRLVK 340 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGI AKINLIPFNPWPG Y CSD I FSE + +GYSSP+RTPRG DILAACGQ Sbjct: 341 LLKGIHAKINLIPFNPWPGTRYECSDWDQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 400 Query: 365 LKSLSKRIPKVPRQEMQ 381 LKS ++++ RQ ++ Sbjct: 401 LKSETEKLSARERQALR 417 >gi|240138201|ref|YP_002962673.1| putative Fe-S containing enzyme (yfgB) [Methylobacterium extorquens AM1] gi|254560761|ref|YP_003067856.1| Fe-S containing enzyme [Methylobacterium extorquens DM4] gi|240008170|gb|ACS39396.1| putative Fe-S containing enzyme (yfgB) [Methylobacterium extorquens AM1] gi|254268039|emb|CAX23910.1| putative Fe-S containing enzyme (yfgB) [Methylobacterium extorquens DM4] Length = 425 Score = 461 bits (1187), Expect = e-128, Method: Compositional matrix adjust. Identities = 221/371 (59%), Positives = 281/371 (75%), Gaps = 5/371 (1%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K SL+G+ RE L++AL+ IG+P+R RMR SQ+W WIYVRG R+F M+++ + ++ L Sbjct: 34 RKASLVGLTREGLKQALIGIGVPERETRMRVSQVWHWIYVRGAREFSEMTNVGKGLKAQL 93 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFP---ARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 HF++ PE+V E++S DGTRKWLLR A EIE VYIP RGTLCVSSQ Sbjct: 94 ADHFTLERPEVVTEQVSRDGTRKWLLRMAPTGAHDHNRGAEIECVYIPGDDRGTLCVSSQ 153 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC+LTCSFC+TGTQ+LVRNL+ EI+ Q+++AR LGDF G + G GR ++N Sbjct: 154 VGCTLTCSFCHTGTQRLVRNLSTAEIVAQLVVARDALGDFTG--QMPGKDGGEPGRLVTN 211 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 IV MGMGEPL N D V ++++ SD GL+ S+RRIT+STSG VP I R+G E MLAI Sbjct: 212 IVFMGMGEPLYNLDAVIDAIAVMSDQEGLALSRRRITVSTSGVVPQIERLGLEANAMLAI 271 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHAV +DLR+ LVP+NRKYP+ L+DACR+YPGLSNARRITFEYVMLKG+NDS DA Sbjct: 272 SLHAVRDDLRDELVPLNRKYPIAQLLDACRNYPGLSNARRITFEYVMLKGVNDSDADARA 331 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L+++LKGIPAKINLIPFNPWPG +Y CSD + I FSE + +GY+SP+RTPRG DILAA Sbjct: 332 LVRLLKGIPAKINLIPFNPWPGSKYECSDWERIERFSEIVFTAGYASPVRTPRGRDILAA 391 Query: 362 CGQLKSLSKRI 372 CGQLKS ++++ Sbjct: 392 CGQLKSETEKL 402 >gi|91975189|ref|YP_567848.1| hypothetical protein RPD_0709 [Rhodopseudomonas palustris BisB5] gi|123763075|sp|Q13D92|RLMN_RHOPS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|91681645|gb|ABE37947.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5] Length = 398 Score = 461 bits (1187), Expect = e-128, Method: Compositional matrix adjust. Identities = 226/368 (61%), Positives = 279/368 (75%), Gaps = 7/368 (1%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIG+ R EL E L IG+ +MR Q+W W+Y+RG RDF M+++S+E+R L+ Sbjct: 22 KPSLIGLSRAELAERLGHIGVAPAQRKMRAQQLWNWMYLRGARDFSEMTNVSKEMRAQLS 81 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPA-RCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 HF++ PE+V E+IS DGTRKWLLR P+ + E+E VYIPE RGTLCVSSQVGC Sbjct: 82 DHFTVDRPEVVAEQISNDGTRKWLLRLPSGDDVQKAHEVECVYIPETDRGTLCVSSQVGC 141 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L CSFC+TGTQ+LVRNLTA EI+ QV++AR L D+ E P+ R ++NIVM Sbjct: 142 TLNCSFCHTGTQRLVRNLTAGEIIGQVMVARDRLNDWVDRE------TPNGNRLVTNIVM 195 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NF+ V+ +L I +D+ G+ S+RR+TLSTSG VPNI R GEEIGVMLAISLH Sbjct: 196 MGMGEPLYNFEAVRDALLIVTDNEGIGISRRRVTLSTSGVVPNIIRTGEEIGVMLAISLH 255 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV ++LR+ LVP+NRKYPL+ L+ ACR YPG SNARRITFEYVMLKG+NDS DA L++ Sbjct: 256 AVRDELRDELVPLNRKYPLKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDARRLVQ 315 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGIPAKINLIPFNPWPG Y CSD I FSE I +GYSSP+RTPRG DILAACGQ Sbjct: 316 LLKGIPAKINLIPFNPWPGSAYECSDWDQIEKFSEYIFNAGYSSPVRTPRGRDILAACGQ 375 Query: 365 LKSLSKRI 372 LKS ++++ Sbjct: 376 LKSETEKL 383 >gi|146337410|ref|YP_001202458.1| putative pyruvate formate lyase activating enzyme 2 (yfgB) [Bradyrhizobium sp. ORS278] gi|205829673|sp|A4YJY2|RLMN_BRASO RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|146190216|emb|CAL74208.1| putative pyruvate formate lyase activating enzyme 2 (yfgB) [Bradyrhizobium sp. ORS278] Length = 403 Score = 461 bits (1186), Expect = e-128, Method: Compositional matrix adjust. Identities = 227/377 (60%), Positives = 280/377 (74%), Gaps = 7/377 (1%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIG+ R EL L IG+P+R +MR Q+W W+Y RG R F M+ +S++ R+ L Sbjct: 27 KPSLIGLSRAELAARLGDIGVPERQQKMRVQQLWHWLYFRGARSFDEMTSVSKDTRNGLA 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPA-RCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F++ PE+V E+IS DGTRKWLLR P+ + E+E VYIPE RGTLCVSSQVGC Sbjct: 87 ERFTVDRPEVVAEQISNDGTRKWLLRLPSGDDLQKAHEVECVYIPETDRGTLCVSSQVGC 146 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC+TGTQ+LVRNLTA EI+ Q+++AR L D+ E P R I+NIVM Sbjct: 147 TLNCAFCHTGTQRLVRNLTAGEIVGQIMVARDRLNDWADRE------TPHGNRLITNIVM 200 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NF+ V+ +L I SD+ G+ S+RRITLSTSG VPNI R GEEIGVMLAISLH Sbjct: 201 MGMGEPLYNFEAVRDALLIVSDNEGIGISRRRITLSTSGVVPNIKRAGEEIGVMLAISLH 260 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV ++LRN LVP+NRKYP+ L+ ACR YPG SNARRITFEYVMLKG+NDS DA L+K Sbjct: 261 AVRDELRNELVPLNRKYPIAELLQACRDYPGASNARRITFEYVMLKGVNDSLDDARLLVK 320 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGIPAKINLIPFNPWPG Y CSD + I FSE + +GYSSP+RTPRG DILAACGQ Sbjct: 321 LLKGIPAKINLIPFNPWPGSAYECSDWEQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 380 Query: 365 LKSLSKRIPKVPRQEMQ 381 LKS ++++ RQ ++ Sbjct: 381 LKSETEKLSARERQALR 397 >gi|23012331|ref|ZP_00052443.1| COG0820: Predicted Fe-S-cluster redox enzyme [Magnetospirillum magnetotacticum MS-1] Length = 425 Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust. Identities = 221/371 (59%), Positives = 282/371 (76%), Gaps = 5/371 (1%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K SL+G RE L++AL+ IG+P+R RMRTSQIW W+YVRG R+F M+++ + ++ L Sbjct: 34 RKASLVGQTREGLKQALIGIGVPEREARMRTSQIWHWLYVRGAREFSEMTNVGKGLKAQL 93 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFP---ARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 QHF++ PE+V E++S DGTRKWLLR A EIE VYIP RGTLCVSSQ Sbjct: 94 AQHFTLDRPEVVTEQVSRDGTRKWLLRMAPTGAHDHNRGAEIECVYIPGDDRGTLCVSSQ 153 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC+LTCSFC+TGTQ+LVRNL+ EI+ Q+++AR LGDF G + G GR ++N Sbjct: 154 VGCTLTCSFCHTGTQRLVRNLSTAEIVSQLVVARDALGDFTG--QMPGKDGGEAGRLVTN 211 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 IV MGMGEPL N D V ++++ SD GL+ S+RRIT+STSG VP I R+G E MLAI Sbjct: 212 IVFMGMGEPLYNLDAVIDAIAVMSDPEGLALSRRRITVSTSGVVPQIERLGLEANAMLAI 271 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHAV ++LR+ LVP+NRKYP+ L++ACR+YPGLSNARRITFEYVMLKG+NDS DA Sbjct: 272 SLHAVRDELRDELVPLNRKYPIAQLLEACRNYPGLSNARRITFEYVMLKGVNDSDADARA 331 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L+++LKGIPAKINLIPFNPWPG +Y CSD + I FSE + +GY+SP+RTPRG DILAA Sbjct: 332 LVRLLKGIPAKINLIPFNPWPGSKYECSDWERIERFSEFVFNAGYASPVRTPRGRDILAA 391 Query: 362 CGQLKSLSKRI 372 CGQLKS ++++ Sbjct: 392 CGQLKSETEKL 402 >gi|188580846|ref|YP_001924291.1| radical SAM enzyme, Cfr family [Methylobacterium populi BJ001] gi|205829790|sp|B1ZG98|RLMN_METPB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|179344344|gb|ACB79756.1| radical SAM enzyme, Cfr family [Methylobacterium populi BJ001] Length = 425 Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust. Identities = 220/371 (59%), Positives = 283/371 (76%), Gaps = 5/371 (1%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K SL+G+ RE L++AL+ IG+P+R RMR SQIW W+YVRG R+F M+++ + ++ L Sbjct: 34 RKASLVGLTREGLKQALIGIGVPERETRMRVSQIWHWLYVRGAREFSEMTNVGKGLKAQL 93 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFP---ARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 +HF++ PE+V E++S DGTRKWLLR A EIE VYIP RGTLCVSSQ Sbjct: 94 AEHFTLDRPEVVTEQVSRDGTRKWLLRMAPTGAHDHNRGAEIECVYIPGDDRGTLCVSSQ 153 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC+LTCSFC+TGTQ+LVRNL+ EI+ Q+++AR LGDF G + G VGR ++N Sbjct: 154 VGCTLTCSFCHTGTQRLVRNLSTAEIVSQLVVARDALGDFTG--QMPGKDGGEVGRLVTN 211 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 IV MGMGEPL N D V ++++ SD GL+ S+RRIT+STSG VP I R+G E MLAI Sbjct: 212 IVFMGMGEPLYNLDAVIDAIAVMSDQEGLALSRRRITVSTSGVVPQIERLGLEANAMLAI 271 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHAV ++LR+ LVP+NRKYP+ L++ACR+YPGLSNARRITFEYVMLKG+NDS DA Sbjct: 272 SLHAVRDELRDELVPLNRKYPIAQLLEACRNYPGLSNARRITFEYVMLKGVNDSDADARA 331 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L+++LKGIPAKINLIPFNPWPG +Y CSD + I FSE + +GY+SP+RTPRG DILAA Sbjct: 332 LVRLLKGIPAKINLIPFNPWPGSKYECSDWERIERFSEFVFNAGYASPVRTPRGRDILAA 391 Query: 362 CGQLKSLSKRI 372 CGQLKS ++++ Sbjct: 392 CGQLKSETEKL 402 >gi|75676990|ref|YP_319411.1| hypothetical protein Nwi_2806 [Nitrobacter winogradskyi Nb-255] gi|74421860|gb|ABA06059.1| 23S rRNA m(2)A-2503 methyltransferase [Nitrobacter winogradskyi Nb-255] Length = 427 Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust. Identities = 226/377 (59%), Positives = 277/377 (73%), Gaps = 7/377 (1%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIG+ R E+ E L IGIP+ RMR Q+W W+YVRG R F M+ +S+++R L Sbjct: 51 KPSLIGLSRAEMAERLAAIGIPREQRRMRVQQLWHWMYVRGARTFAEMTSVSKDMRAELE 110 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPA-RCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +H ++ PE+V E+IS DGTRKWLLR P+ + P E+E VYIPE RGTLCVSSQVGC Sbjct: 111 KHVTLDRPEVVAEQISSDGTRKWLLRLPSGDDLEKPHEVECVYIPETDRGTLCVSSQVGC 170 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L CSFC+TGTQ+LVRNLTA EI+ Q+++AR L D+ E P R ++NIVM Sbjct: 171 TLNCSFCHTGTQRLVRNLTAGEIVGQIMVARDRLNDWADRE------TPHGNRLVTNIVM 224 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFD V+ L I +D+ G+ SKRRITLSTSG VPNI R GEEIGVMLAISLH Sbjct: 225 MGMGEPLYNFDAVRDGLLIVADNEGIGISKRRITLSTSGVVPNIVRAGEEIGVMLAISLH 284 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV ++LR+ LVP+NRKYP+ L+ ACR YP SNA+RITFEYVMLKG+NDS DA L+K Sbjct: 285 AVRDELRDELVPLNRKYPIAELMQACRDYPAASNAKRITFEYVMLKGVNDSLDDARRLVK 344 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L GI AKINLIPFNPWPG Y CSD I FSE + +GYSSP+RTPRG DILAACGQ Sbjct: 345 LLNGIHAKINLIPFNPWPGTRYECSDWDQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 404 Query: 365 LKSLSKRIPKVPRQEMQ 381 LKS ++++ RQ ++ Sbjct: 405 LKSETEKLSARERQALR 421 >gi|218529897|ref|YP_002420713.1| radical SAM enzyme, Cfr family [Methylobacterium chloromethanicum CM4] gi|218522200|gb|ACK82785.1| radical SAM enzyme, Cfr family [Methylobacterium chloromethanicum CM4] Length = 425 Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust. Identities = 220/371 (59%), Positives = 281/371 (75%), Gaps = 5/371 (1%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K SL+G+ RE L++AL+ IG+P+R RMR SQ+W WIYVRG R+F M+++ + ++ L Sbjct: 34 RKASLVGLTREGLKQALIGIGVPERETRMRVSQVWHWIYVRGAREFSEMTNVGKGLKAQL 93 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFP---ARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 HF++ PE+V E++S DGTRKWLLR A EIE VYIP RGTLCVSSQ Sbjct: 94 ADHFTLERPEVVTEQVSRDGTRKWLLRMAPTGAHDHNRGAEIECVYIPGDDRGTLCVSSQ 153 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC+LTCSFC+TGTQ+LVRNL+ EI+ Q+++AR LGDF G + G GR ++N Sbjct: 154 VGCTLTCSFCHTGTQRLVRNLSTAEIVAQLVVARDALGDFTG--QMPGKDGGEPGRLVTN 211 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 IV MGMGEPL N D V ++++ SD GL+ S+RRIT+STSG VP I R+G E MLAI Sbjct: 212 IVFMGMGEPLYNLDAVIDAIAVMSDQEGLALSRRRITVSTSGVVPQIERLGLEANAMLAI 271 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHAV ++LR+ LVP+NRKYP+ L+DACR+YPGLSNARRITFEYVMLKG+NDS DA Sbjct: 272 SLHAVRDELRDELVPLNRKYPIAQLLDACRNYPGLSNARRITFEYVMLKGVNDSDADARA 331 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L+++LKGIPAKINLIPFNPWPG +Y CSD + I FSE + +GY+SP+RTPRG DILAA Sbjct: 332 LVRLLKGIPAKINLIPFNPWPGSKYECSDWERIERFSEIVFTAGYASPVRTPRGRDILAA 391 Query: 362 CGQLKSLSKRI 372 CGQLKS ++++ Sbjct: 392 CGQLKSETEKL 402 >gi|205829850|sp|Q3SNT2|RLMN_NITWN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase Length = 397 Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust. Identities = 226/377 (59%), Positives = 277/377 (73%), Gaps = 7/377 (1%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIG+ R E+ E L IGIP+ RMR Q+W W+YVRG R F M+ +S+++R L Sbjct: 21 KPSLIGLSRAEMAERLAAIGIPREQRRMRVQQLWHWMYVRGARTFAEMTSVSKDMRAELE 80 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPA-RCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +H ++ PE+V E+IS DGTRKWLLR P+ + P E+E VYIPE RGTLCVSSQVGC Sbjct: 81 KHVTLDRPEVVAEQISSDGTRKWLLRLPSGDDLEKPHEVECVYIPETDRGTLCVSSQVGC 140 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L CSFC+TGTQ+LVRNLTA EI+ Q+++AR L D+ E P R ++NIVM Sbjct: 141 TLNCSFCHTGTQRLVRNLTAGEIVGQIMVARDRLNDWADRE------TPHGNRLVTNIVM 194 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFD V+ L I +D+ G+ SKRRITLSTSG VPNI R GEEIGVMLAISLH Sbjct: 195 MGMGEPLYNFDAVRDGLLIVADNEGIGISKRRITLSTSGVVPNIVRAGEEIGVMLAISLH 254 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV ++LR+ LVP+NRKYP+ L+ ACR YP SNA+RITFEYVMLKG+NDS DA L+K Sbjct: 255 AVRDELRDELVPLNRKYPIAELMQACRDYPAASNAKRITFEYVMLKGVNDSLDDARRLVK 314 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L GI AKINLIPFNPWPG Y CSD I FSE + +GYSSP+RTPRG DILAACGQ Sbjct: 315 LLNGIHAKINLIPFNPWPGTRYECSDWDQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 374 Query: 365 LKSLSKRIPKVPRQEMQ 381 LKS ++++ RQ ++ Sbjct: 375 LKSETEKLSARERQALR 391 >gi|316931629|ref|YP_004106611.1| radical SAM protein [Rhodopseudomonas palustris DX-1] gi|315599343|gb|ADU41878.1| radical SAM enzyme, Cfr family [Rhodopseudomonas palustris DX-1] Length = 399 Score = 458 bits (1179), Expect = e-127, Method: Compositional matrix adjust. Identities = 226/368 (61%), Positives = 280/368 (76%), Gaps = 7/368 (1%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIG+ R +L + L +IG+ +MR Q+W W+YVRG RDF M+++S+E+R L Sbjct: 23 KPSLIGLSRAQLCDRLGEIGVAPPQRKMRAQQLWHWMYVRGARDFSEMTNVSKEMRATLA 82 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPV-EIETVYIPEKSRGTLCVSSQVGC 124 +H ++ PE+V E+IS DGTRKWLLR P+ G E+E VYIPE RGTLCVSSQVGC Sbjct: 83 EHVTVDRPEVVAEQISADGTRKWLLRLPSGGDGQKAHEVECVYIPETDRGTLCVSSQVGC 142 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC+TGTQ+LVRNLTA EI+ QV++AR L D+ E P+ R I+NIVM Sbjct: 143 TLNCAFCHTGTQRLVRNLTAGEIVGQVMVARDRLNDWIDRE------TPNGNRLITNIVM 196 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFD V+ +L I SD+ G+ S+RRITLSTSG VPNI R G+EIGVMLAISLH Sbjct: 197 MGMGEPLYNFDAVRDALLIVSDNEGIGISRRRITLSTSGVVPNIKRTGDEIGVMLAISLH 256 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV ++LR+ LVP+NRKYPL+ L+ ACR YPG SNARRITFEYVMLKG+ND+ DA L++ Sbjct: 257 AVRDELRDELVPLNRKYPLKELLQACRDYPGASNARRITFEYVMLKGVNDTIDDARKLVQ 316 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGIPAKINLIPFNPWPG +Y CSD I FSE I +GYSSP+RTPRG DILAACGQ Sbjct: 317 LLKGIPAKINLIPFNPWPGSKYECSDWDQIEKFSEYIFNAGYSSPVRTPRGRDILAACGQ 376 Query: 365 LKSLSKRI 372 LKS ++++ Sbjct: 377 LKSETEKL 384 >gi|163851067|ref|YP_001639110.1| radical SAM protein [Methylobacterium extorquens PA1] gi|205829789|sp|A9W383|RLMN_METEP RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|163662672|gb|ABY30039.1| radical SAM enzyme, Cfr family [Methylobacterium extorquens PA1] Length = 425 Score = 458 bits (1179), Expect = e-127, Method: Compositional matrix adjust. Identities = 219/371 (59%), Positives = 281/371 (75%), Gaps = 5/371 (1%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K SL+G+ RE L++AL+ IG+P+R RMR SQ+W WIYVRG R+F M+++ + ++ L Sbjct: 34 RKASLVGLTREGLKQALIGIGVPERETRMRVSQVWHWIYVRGAREFSEMTNVGKGLKAQL 93 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFP---ARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 HF++ PE+V E++S DGTRKWLLR A EIE VYIP RGTLCVSSQ Sbjct: 94 ADHFTLERPEVVTEQVSRDGTRKWLLRMAPTGAHDHNRGAEIECVYIPGDDRGTLCVSSQ 153 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC+LTCSFC+TGTQ+LVRNL+ EI+ Q+++AR LGDF G + G GR ++N Sbjct: 154 VGCTLTCSFCHTGTQRLVRNLSTAEIVAQLVVARDALGDFTG--QMPGKDGGEPGRLVTN 211 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 IV MGMGEPL N D V ++++ SD GL+ S+RRIT+STSG VP + R+G E MLAI Sbjct: 212 IVFMGMGEPLYNLDAVIDAIAVMSDQEGLALSRRRITVSTSGVVPQMERLGLEANAMLAI 271 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHAV ++LR+ LVP+NRKYP+ L+DACR+YPGLSNARRITFEYVMLKG+NDS DA Sbjct: 272 SLHAVRDELRDELVPLNRKYPIAQLLDACRNYPGLSNARRITFEYVMLKGVNDSDADARA 331 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L+++LKGIPAKINLIPFNPWPG +Y CSD + I FSE + +GY+SP+RTPRG DILAA Sbjct: 332 LVRLLKGIPAKINLIPFNPWPGSKYECSDWERIERFSEIVFTAGYASPVRTPRGRDILAA 391 Query: 362 CGQLKSLSKRI 372 CGQLKS ++++ Sbjct: 392 CGQLKSETEKL 402 >gi|27375636|ref|NP_767165.1| hypothetical protein bll0525 [Bradyrhizobium japonicum USDA 110] gi|81740269|sp|Q89X03|RLMN_BRAJA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|27348773|dbj|BAC45790.1| bll0525 [Bradyrhizobium japonicum USDA 110] Length = 400 Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust. Identities = 228/377 (60%), Positives = 279/377 (74%), Gaps = 9/377 (2%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIG+ R EL + L +IG+ +MR Q+W W+Y RG ++F M+ IS+ +R L Sbjct: 26 KPSLIGLSRNELADRLGEIGVAPAQRKMRVQQLWHWMYFRGAQNFDEMTSISKGIRAELA 85 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPA-RCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 QHF++ PE+V E+IS DGTRKWLLR P+ + E+E VYIPE RGTLCVSSQVGC Sbjct: 86 QHFTVDRPEVVAEQISNDGTRKWLLRLPSGDNVEKAHEVECVYIPETDRGTLCVSSQVGC 145 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L CSFC+TGTQ+LVRNLTA EI+ QV++AR L D+ ED R+++NIVM Sbjct: 146 TLNCSFCHTGTQRLVRNLTAGEIVGQVMVARDRLNDWADRED--------GTRRVTNIVM 197 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFD V+ +L I D+ G+ S+RRITLSTSG VPNI R GEEIGVMLAISLH Sbjct: 198 MGMGEPLYNFDAVRDALLIVGDNEGIGISRRRITLSTSGVVPNIVRAGEEIGVMLAISLH 257 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV ++LRN LVP+NRKYP++ L+ ACR YPG SNARRITFEYVMLKG+NDS DA L+K Sbjct: 258 AVRDELRNELVPLNRKYPIKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDAKLLVK 317 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGI AKINLIPFNPWPG Y CSD I FSE I +GYSSP+RTPRG DILAACGQ Sbjct: 318 LLKGIHAKINLIPFNPWPGTAYECSDWDQIEKFSEYIFNAGYSSPVRTPRGRDILAACGQ 377 Query: 365 LKSLSKRIPKVPRQEMQ 381 LKS ++++ RQ ++ Sbjct: 378 LKSETEKLSARERQTLR 394 >gi|92119085|ref|YP_578814.1| hypothetical protein Nham_3626 [Nitrobacter hamburgensis X14] gi|123386907|sp|Q1QHE3|RLMN_NITHX RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|91801979|gb|ABE64354.1| 23S rRNA m(2)A-2503 methyltransferase [Nitrobacter hamburgensis X14] Length = 397 Score = 456 bits (1172), Expect = e-126, Method: Compositional matrix adjust. Identities = 224/377 (59%), Positives = 278/377 (73%), Gaps = 7/377 (1%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIG+ R E+ E L IG+ RMR Q+W W+YVRG + M+++S+++R L Sbjct: 21 KPSLIGLSRAEISERLAAIGVAPAQRRMRVQQLWHWMYVRGAKTVGEMTNVSKDMRAELE 80 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPA-RCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +H ++ PE+V E+IS DGTRKWLLR P+ + P E+E VYIPE RGTLCVSSQVGC Sbjct: 81 KHVTVDRPEVVAEQISNDGTRKWLLRLPSGNTLEKPHEVECVYIPETDRGTLCVSSQVGC 140 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L CSFC+TGTQ+LVRNLTA EI+ Q+++AR L D+ E P R ++NIVM Sbjct: 141 TLNCSFCHTGTQRLVRNLTAGEIVGQIMVARDRLNDWADRE------TPHGNRLVTNIVM 194 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFD V+ +L I +D+ G+ SKRRITLSTSG VPNI R GEEIGVMLAISLH Sbjct: 195 MGMGEPLYNFDAVRDALLIVADNEGIGISKRRITLSTSGVVPNIVRTGEEIGVMLAISLH 254 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV ++LRN LVP+NRKYP+ L+ ACR YP SNA+RITFEYVMLKG+NDS DA L+K Sbjct: 255 AVRDELRNELVPLNRKYPIAELMQACRDYPAASNAKRITFEYVMLKGVNDSLDDAKLLVK 314 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGI AKINLIPFNPWPG Y CSD + I FSE + +GYSSP+RTPRG DILAACGQ Sbjct: 315 LLKGIHAKINLIPFNPWPGTRYECSDWEQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 374 Query: 365 LKSLSKRIPKVPRQEMQ 381 LKS ++++ RQ ++ Sbjct: 375 LKSETEKLSARERQALR 391 >gi|220924357|ref|YP_002499659.1| radical SAM enzyme, Cfr family [Methylobacterium nodulans ORS 2060] gi|219948964|gb|ACL59356.1| radical SAM enzyme, Cfr family [Methylobacterium nodulans ORS 2060] Length = 431 Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust. Identities = 216/371 (58%), Positives = 277/371 (74%), Gaps = 4/371 (1%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + SL+G+ R L E L IG+P+R RMRT Q+W WI VRG F+ M+++ + ++ L Sbjct: 37 RPSLVGLTRNALRERLAAIGVPEREQRMRTGQLWHWINVRGASSFEAMTNVGKALKAELE 96 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPA---RCIGGPVEIETVYIPEKSRGTLCVSSQV 122 Q +++ PE+V E++S DGTRKWLLR P EIE VYIP RGTLCVSSQV Sbjct: 97 QVYTLDRPEVVSEQVSRDGTRKWLLRMPPTGRHDHNRGAEIECVYIPANDRGTLCVSSQV 156 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISN 181 GC+LTCSFC+TGTQ+LVRNL+A+EI Q+++AR LGD+PG +G +P G R +SN Sbjct: 157 GCTLTCSFCHTGTQRLVRNLSAQEITAQLVVARDRLGDWPGQSPPKGTFVPVDGSRFVSN 216 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 +V MGMGEPL N DNV ++ + SD+ GL S+RRIT+STSG VP R+G + MLAI Sbjct: 217 VVFMGMGEPLYNVDNVIDAIGVMSDNEGLGLSRRRITVSTSGVVPQFERLGIDANAMLAI 276 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHAV +DLRN+LVP+NRKYP+ L+DACR+YPG+SNARRITFEYVMLKG+NDS +A Sbjct: 277 SLHAVRDDLRNVLVPLNRKYPIRELLDACRNYPGVSNARRITFEYVMLKGVNDSDAEARE 336 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L+++LKGIPAKINLIPFNPWPG Y CSD + I FSE + +GY+SP+RTPRG DILAA Sbjct: 337 LVRLLKGIPAKINLIPFNPWPGSSYECSDWERIERFSEIVFNAGYASPVRTPRGRDILAA 396 Query: 362 CGQLKSLSKRI 372 CGQLKS ++++ Sbjct: 397 CGQLKSETEKL 407 >gi|154251833|ref|YP_001412657.1| radical SAM protein [Parvibaculum lavamentivorans DS-1] gi|205829796|sp|A7HSW7|RLMN_PARL1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|154155783|gb|ABS63000.1| radical SAM enzyme, Cfr family [Parvibaculum lavamentivorans DS-1] Length = 399 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 224/361 (62%), Positives = 272/361 (75%), Gaps = 9/361 (2%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L G+ R L +AL G+P +RMR QIW +Y RG DF+ M+ +S+E+R L F Sbjct: 24 LAGLTRPLLMDALKAFGLPDNQLRMRAGQIWNGLYNRGFTDFERMTTLSKELRGKLADAF 83 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGP-VEIETVYIPEKSRGTLCVSSQVGCSLT 127 I EIV E+ S DGTRKWLLR P+ G P E+ETVYIPE+ RGTLCVSSQVGC+LT Sbjct: 84 DISRLEIVTEQKSVDGTRKWLLRLPSGIPGVPGPEVETVYIPEEGRGTLCVSSQVGCTLT 143 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP-GCEDIEGMVIPSVGRKISNIVMMG 186 C+FC+TGTQKLVRNLTA EI+ Q+LLAR LG++P G + E R I+NIVMMG Sbjct: 144 CTFCHTGTQKLVRNLTAGEIVGQILLARDALGEWPDGGRNSED-------RLITNIVMMG 196 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL NF+NV+ +L + SD GLS SKRRITLSTSG VP I R GEEIG MLAISLHAV Sbjct: 197 MGEPLYNFENVRDALEVVSDGEGLSLSKRRITLSTSGVVPMIERAGEEIGCMLAISLHAV 256 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ RN LVP+N+KYP+ L++ACR+YPG+SNARRITFEYVMLKG+NDS DA L+++L Sbjct: 257 DDETRNRLVPLNKKYPIAELLEACRNYPGVSNARRITFEYVMLKGVNDSLEDAKALVRLL 316 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 K IPAKINLIPFNPWPG Y CSD + I F++ + R+GY+SP+RTPRG DI+AACGQLK Sbjct: 317 KHIPAKINLIPFNPWPGSPYECSDWEQIEKFADVVNRAGYASPVRTPRGRDIMAACGQLK 376 Query: 367 S 367 S Sbjct: 377 S 377 >gi|170742676|ref|YP_001771331.1| radical SAM protein [Methylobacterium sp. 4-46] gi|205829810|sp|B0UQR1|RLMN_METS4 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|168196950|gb|ACA18897.1| radical SAM enzyme, Cfr family [Methylobacterium sp. 4-46] Length = 431 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 214/371 (57%), Positives = 276/371 (74%), Gaps = 4/371 (1%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + SL+G+ R L E L IG+P+R RMRT Q+W WI VRG F+ M+++ + ++ L Sbjct: 37 RPSLVGLTRGALRERLAAIGVPEREQRMRTGQLWHWINVRGAASFEAMTNVGKGLKAQLE 96 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPA---RCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + +++ PE+V E++S DGTRKWLLR P EIE VYIP RGTLCVSSQV Sbjct: 97 EAYTLDRPEVVSEQVSRDGTRKWLLRMPPTGRHDHNRGAEIECVYIPANDRGTLCVSSQV 156 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISN 181 GC+LTCSFC+TGTQ+LVRNL+A+EI Q+++AR LGD+PG +G +P G R +SN Sbjct: 157 GCTLTCSFCHTGTQRLVRNLSAQEITAQLVVARDRLGDWPGQVPPKGTFVPVDGSRFVSN 216 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 IV MGMGEPL N DNV ++ + SD+ GL S+RRIT+STSG VP R+G + MLAI Sbjct: 217 IVFMGMGEPLYNVDNVVDAVGVMSDNEGLGLSRRRITVSTSGVVPQFERLGIDANAMLAI 276 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHAV +DLR+ LVP+NRKYP+ L++ACR+YPG+SNARRITFEYVMLKG+NDS +A Sbjct: 277 SLHAVRDDLRDELVPLNRKYPIRTLLEACRNYPGVSNARRITFEYVMLKGVNDSDSEARE 336 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L+++LKGIPAKINLIPFNPWPG Y CSD + I FSE + +GY+SP+RTPRG DILAA Sbjct: 337 LVRLLKGIPAKINLIPFNPWPGSRYECSDWERIERFSEIVFNAGYASPVRTPRGRDILAA 396 Query: 362 CGQLKSLSKRI 372 CGQLKS ++++ Sbjct: 397 CGQLKSETEKL 407 >gi|170747554|ref|YP_001753814.1| radical SAM protein [Methylobacterium radiotolerans JCM 2831] gi|170654076|gb|ACB23131.1| radical SAM enzyme, Cfr family [Methylobacterium radiotolerans JCM 2831] Length = 430 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 212/374 (56%), Positives = 271/374 (72%), Gaps = 8/374 (2%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 ++ SL+G+ R+ L+ L+ +G+P+R RMR Q+W W+ RG DF M+++ + ++ L Sbjct: 36 RRPSLVGLTRDALKAQLIGMGVPERESRMRAGQVWHWVNFRGASDFAEMTNVGKALKAQL 95 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPA---RCIGGPVEIETVYIPEKSRGTLCVSSQ 121 +HF++ PE+ ++S DGTRKWLLR + EIE VYIP RGTLCVSSQ Sbjct: 96 AEHFTLERPEVASRQVSRDGTRKWLLRMAPTNRQEHNRGAEIECVYIPGPDRGTLCVSSQ 155 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPG---CEDIEGMVIPSVGRK 178 VGC+LTCSFC+TGTQ+LVRNL+A EI+ Q++ AR LGD+PG D G VGR Sbjct: 156 VGCTLTCSFCHTGTQRLVRNLSAAEIVQQLVTARDELGDWPGQMPSRDAGGS--GEVGRL 213 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238 ++NIV MGMGEPL N D V ++ + SD GL S+RRIT+STSG VP I R+GE+ M Sbjct: 214 VTNIVFMGMGEPLYNLDAVVDAVGVMSDQEGLGLSRRRITVSTSGVVPQIPRLGEQANAM 273 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LAISLHAV +DLR+ LVP+NRKYP+ L+ ACR YPGLSNARRITFEYVMLKG+NDS D Sbjct: 274 LAISLHAVRDDLRDELVPLNRKYPIAELLAACRAYPGLSNARRITFEYVMLKGVNDSDAD 333 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L+++LKGIPAKINLIPFNPWPG Y CSD I FSE + +GY+SP+RTPRG DI Sbjct: 334 ARELVRLLKGIPAKINLIPFNPWPGSRYECSDWDRIERFSEIVFNAGYASPVRTPRGRDI 393 Query: 359 LAACGQLKSLSKRI 372 LAACGQLKS ++++ Sbjct: 394 LAACGQLKSETEKL 407 >gi|205829854|sp|B1M1U6|RLMN_METRJ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase Length = 424 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 212/374 (56%), Positives = 271/374 (72%), Gaps = 8/374 (2%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 ++ SL+G+ R+ L+ L+ +G+P+R RMR Q+W W+ RG DF M+++ + ++ L Sbjct: 30 RRPSLVGLTRDALKAQLIGMGVPERESRMRAGQVWHWVNFRGASDFAEMTNVGKALKAQL 89 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPA---RCIGGPVEIETVYIPEKSRGTLCVSSQ 121 +HF++ PE+ ++S DGTRKWLLR + EIE VYIP RGTLCVSSQ Sbjct: 90 AEHFTLERPEVASRQVSRDGTRKWLLRMAPTNRQEHNRGAEIECVYIPGPDRGTLCVSSQ 149 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPG---CEDIEGMVIPSVGRK 178 VGC+LTCSFC+TGTQ+LVRNL+A EI+ Q++ AR LGD+PG D G VGR Sbjct: 150 VGCTLTCSFCHTGTQRLVRNLSAAEIVQQLVTARDELGDWPGQMPSRDAGGS--GEVGRL 207 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238 ++NIV MGMGEPL N D V ++ + SD GL S+RRIT+STSG VP I R+GE+ M Sbjct: 208 VTNIVFMGMGEPLYNLDAVVDAVGVMSDQEGLGLSRRRITVSTSGVVPQIPRLGEQANAM 267 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LAISLHAV +DLR+ LVP+NRKYP+ L+ ACR YPGLSNARRITFEYVMLKG+NDS D Sbjct: 268 LAISLHAVRDDLRDELVPLNRKYPIAELLAACRAYPGLSNARRITFEYVMLKGVNDSDAD 327 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L+++LKGIPAKINLIPFNPWPG Y CSD I FSE + +GY+SP+RTPRG DI Sbjct: 328 ARELVRLLKGIPAKINLIPFNPWPGSRYECSDWDRIERFSEIVFNAGYASPVRTPRGRDI 387 Query: 359 LAACGQLKSLSKRI 372 LAACGQLKS ++++ Sbjct: 388 LAACGQLKSETEKL 401 >gi|146276099|ref|YP_001166258.1| radical SAM protein [Rhodobacter sphaeroides ATCC 17025] gi|205829868|sp|A4WNI9|RLMN_RHOS5 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|145554340|gb|ABP68953.1| radical SAM enzyme, Cfr family [Rhodobacter sphaeroides ATCC 17025] Length = 392 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 211/377 (55%), Positives = 276/377 (73%), Gaps = 10/377 (2%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +++G+ REEL AL+ G P+R RMR Q+W+W+Y G+RDF M++++++ R LL +H Sbjct: 25 NIVGLTREELMAALVAAGTPERQARMRMGQVWQWVYHWGVRDFAQMTNLAKDYRALLAEH 84 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F+I+ PE+V +IS DGTRK+L+R I G E+ETVYIPE+ RGTLCVSSQVGC+LT Sbjct: 85 FAIVLPEVVTRQISADGTRKYLIR-----IAGGHEVETVYIPEEGRGTLCVSSQVGCTLT 139 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 CSFC+TGTQKLVRNLTA EI+ QV+L R LG++P E R +SN+V+MGM Sbjct: 140 CSFCHTGTQKLVRNLTAGEIVGQVMLVRDDLGEWP-----ERGAPKDETRLVSNLVLMGM 194 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL NF+NV+ ++ + D GLS S+RRITLSTSG VP IAR EEIG LAIS HA + Sbjct: 195 GEPLYNFENVRNAMKVVMDGEGLSLSRRRITLSTSGVVPEIARTAEEIGCQLAISFHATT 254 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 +++R+ILVPIN+++ + L+D+ R YP LSN+ RITFEYVML GINDS DA L+K++ Sbjct: 255 DEVRDILVPINKRWNIRTLLDSLRDYPRLSNSERITFEYVMLDGINDSDADARRLVKLIS 314 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 GIP+KINLIPFN WPG Y S + I F++ I ++GY+SPIRTPRG DI+AACGQLKS Sbjct: 315 GIPSKINLIPFNEWPGAPYRRSTPERIAAFADIIYKAGYASPIRTPRGEDIMAACGQLKS 374 Query: 368 LSKRIPKVPRQEMQITG 384 ++R K Q TG Sbjct: 375 ATERARKSRAQIAAETG 391 >gi|119385232|ref|YP_916288.1| radical SAM protein [Paracoccus denitrificans PD1222] gi|205829795|sp|A1B4Z8|RLMN_PARDP RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|119374999|gb|ABL70592.1| 23S rRNA m(2)A-2503 methyltransferase [Paracoccus denitrificans PD1222] Length = 391 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 207/366 (56%), Positives = 276/366 (75%), Gaps = 14/366 (3%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L+G+ RE+L EAL++ G P+R RMR QIW+WIY G+RDF M++++++ R LL ++ Sbjct: 24 NLVGLTREQLHEALIQAGTPERQARMRVGQIWQWIYHWGVRDFAQMTNLAKDYRALLAEN 83 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F I PEIV +IS DGTRK+LLR I G E+ETVYIPE++RGTLC+SSQVGC+LT Sbjct: 84 FEIALPEIVTRQISADGTRKYLLR-----ISGGHEVETVYIPEENRGTLCISSQVGCTLT 138 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP--GCEDIEGMVIPSVGRKISNIVMM 185 CSFC+TGTQKLVRNLTA EI+ QV++AR LG++P G E R +SN+V+M Sbjct: 139 CSFCHTGTQKLVRNLTAGEIVGQVMVARDDLGEWPKPGAPKDET-------RLVSNVVLM 191 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV+ ++ + D G+S S+RRITLSTSG VP IA+ EEIG +LA+S HA Sbjct: 192 GMGEPLYNFDNVRDAMKVVMDGEGISLSRRRITLSTSGIVPEIAKTAEEIGCLLAVSFHA 251 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +++ R+ LVP+NRK+ +E L++A R YP LSN+ RITFEYVML G+NDS DA L+++ Sbjct: 252 TTDETRDKLVPVNRKWNIETLLNALREYPRLSNSERITFEYVMLDGVNDSDEDARRLVRL 311 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 ++GIPAK+NLIPFN WPG Y S + I F++ + ++GY+SPIRTPRG DI+AACGQL Sbjct: 312 IRGIPAKVNLIPFNEWPGSPYRRSGWERIEAFADIVHKAGYASPIRTPRGEDIMAACGQL 371 Query: 366 KSLSKR 371 KS ++R Sbjct: 372 KSATER 377 >gi|77464959|ref|YP_354463.1| radical SAM superfamily protein [Rhodobacter sphaeroides 2.4.1] gi|126460828|ref|YP_001041942.1| radical SAM protein [Rhodobacter sphaeroides ATCC 17029] gi|221640880|ref|YP_002527142.1| Radical SAM enzyme, Cfr family [Rhodobacter sphaeroides KD131] gi|332559858|ref|ZP_08414180.1| Radical SAM enzyme, Cfr family protein [Rhodobacter sphaeroides WS8N] gi|123757738|sp|Q3IY22|RLMN_RHOS4 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829867|sp|A3PFQ4|RLMN_RHOS1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807200|sp|B9KQP1|RLMN_RHOSK RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|77389377|gb|ABA80562.1| radical SAM superfamily protein [Rhodobacter sphaeroides 2.4.1] gi|126102492|gb|ABN75170.1| radical SAM enzyme, Cfr family [Rhodobacter sphaeroides ATCC 17029] gi|221161661|gb|ACM02641.1| Radical SAM enzyme, Cfr family [Rhodobacter sphaeroides KD131] gi|332277570|gb|EGJ22885.1| Radical SAM enzyme, Cfr family protein [Rhodobacter sphaeroides WS8N] Length = 392 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 207/377 (54%), Positives = 276/377 (73%), Gaps = 10/377 (2%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +++G+ REEL AL+ G P+R +MR Q+W+W+Y G+RDF M++++++ R LL +H Sbjct: 25 NIVGLTREELLAALVAAGTPERQAKMRAGQVWQWVYHWGVRDFAQMTNLAKDYRALLAEH 84 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F+I+ PE+V +IS DGTRK+L+R I G E+ETVYIPE+ RGTLCVSSQVGC+LT Sbjct: 85 FAIVLPEVVTRQISADGTRKYLIR-----IAGGHEVETVYIPEEGRGTLCVSSQVGCTLT 139 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 CSFC+TGTQKLVRNLTA EI+ Q++L R LG++P E R +SN+V+MGM Sbjct: 140 CSFCHTGTQKLVRNLTAAEIVGQLMLVRDDLGEWP-----ERGAPKDETRLVSNLVLMGM 194 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL NF+NV+ ++ + D GLS S+RRITLSTSG VP IAR EEIG LAIS HA + Sbjct: 195 GEPLYNFENVRNAMKVVMDGEGLSLSRRRITLSTSGVVPEIARTAEEIGCQLAISFHATT 254 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 +++R+ILVPIN+++ + L+D+ R YP LSN+ RITFEYVML G+ND+ DA L+K++ Sbjct: 255 DEVRDILVPINKRWNIRTLLDSLRDYPRLSNSERITFEYVMLDGVNDTDADARRLVKLIS 314 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 GIP+KINLIPFN WPG Y S + I F++ I ++GY+SPIRTPRG DI+AACGQLKS Sbjct: 315 GIPSKINLIPFNEWPGAPYRRSTPERIAAFADIIYKAGYASPIRTPRGEDIMAACGQLKS 374 Query: 368 LSKRIPKVPRQEMQITG 384 ++R K Q TG Sbjct: 375 ATERARKSRAQIAAETG 391 >gi|84683986|ref|ZP_01011888.1| radical SAM superfamily protein [Maritimibacter alkaliphilus HTCC2654] gi|84667739|gb|EAQ14207.1| radical SAM superfamily protein [Rhodobacterales bacterium HTCC2654] Length = 394 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 210/371 (56%), Positives = 272/371 (73%), Gaps = 9/371 (2%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 L K +L+G+ R+ L +AL+ G P++ +MR Q+W+WIY +G+RDF M+++S++ R L Sbjct: 22 LGKPNLVGLTRDGLRDALIAAGTPEKQAKMRVGQVWQWIYQKGVRDFADMTNLSKDYRAL 81 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L+QHF I PE+V +++S DGTRK+L+R I G E+E VYIPE+ RGTLCVSSQVG Sbjct: 82 LDQHFEIRVPELVSKQVSTDGTRKYLVR-----IAGGHEVEVVYIPEEDRGTLCVSSQVG 136 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+LTCSFC+TGTQKLVRNLTA EI+ Q+++AR L D+ G + R +SNIV Sbjct: 137 CTLTCSFCHTGTQKLVRNLTAGEIVGQIMMARDDLEDWVPA----GKGMGERPRLVSNIV 192 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 +MGMGEPL NFD V+ ++ IA D G+S S+RRITLSTSG VP IAR G EIG MLAIS Sbjct: 193 LMGMGEPLYNFDAVRDAMKIAMDGEGISLSRRRITLSTSGVVPEIARAGAEIGCMLAISF 252 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA ++ R+ LVPIN+K+ +E L+ A + YP LSN+ RITFEYVML G+NDS DA LI Sbjct: 253 HATDDETRDKLVPINKKWNIEKLLAALKEYPKLSNSERITFEYVMLDGVNDSDEDARRLI 312 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+++GIPAKINLIPFN WPG Y S I F+ I ++GY+SPIRTPRG DI+AACG Sbjct: 313 KLIEGIPAKINLIPFNEWPGAPYKRSSNNRIRAFANIIYQAGYASPIRTPRGEDIMAACG 372 Query: 364 QLKSLSKRIPK 374 QLKS ++R K Sbjct: 373 QLKSETERARK 383 >gi|288957012|ref|YP_003447353.1| radical SAM enzyme [Azospirillum sp. B510] gi|288909320|dbj|BAI70809.1| radical SAM enzyme [Azospirillum sp. B510] Length = 396 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 211/367 (57%), Positives = 268/367 (73%), Gaps = 18/367 (4%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 +++L+G+ REELE +L +G+ + R Q+W WIY RG DF M+ +++ VR L Sbjct: 27 RKNLVGLSREELEAEMLAVGLE----KFRARQLWHWIYHRGSTDFAEMTTLAKPVREKLA 82 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + P +V + S DGTRKWLLR P E+E+V+IPE+ RGTLCVSSQVGC+ Sbjct: 83 DTHIVARPTVVTDLKSADGTRKWLLRMP-----DGQEVESVHIPEEDRGTLCVSSQVGCT 137 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTC FC+TGTQ+LVRNL A EI+ QV+LAR +LG++P P GR +SNIVMM Sbjct: 138 LTCRFCHTGTQRLVRNLDAAEIVAQVMLARDMLGEWPA---------PPDGRMLSNIVMM 188 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N+DNV K+L I D G+S SKRRITLSTSG VP + R G+E+ V LA+SLHA Sbjct: 189 GMGEPLFNYDNVAKALKIVMDGDGISISKRRITLSTSGVVPMMERCGQELNVNLAVSLHA 248 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V+++LRNI++PINRKYPL L++ACR YPGLSNARRITFEYVMLKG+ND+P DA L+K+ Sbjct: 249 VTDELRNIIMPINRKYPLRELMEACRTYPGLSNARRITFEYVMLKGVNDTPADARALVKL 308 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+GIPAKINLIPFN WPG Y S + I F + + +GY+SP+RTPRG DI+AACGQL Sbjct: 309 LEGIPAKINLIPFNEWPGAPYERSTARAIQLFGDIVNNAGYASPVRTPRGEDIMAACGQL 368 Query: 366 KSLSKRI 372 KS S R+ Sbjct: 369 KSASLRL 375 >gi|126729978|ref|ZP_01745790.1| hypothetical protein SSE37_16408 [Sagittula stellata E-37] gi|126709358|gb|EBA08412.1| hypothetical protein SSE37_16408 [Sagittula stellata E-37] Length = 394 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 210/376 (55%), Positives = 281/376 (74%), Gaps = 9/376 (2%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ R L +ALL +G P++ V+MR +Q+W+W+Y G+RDF M++++++ R L+ Sbjct: 22 KINLVGLTRAGLRDALLAMGTPEKQVKMRVNQVWQWVYFWGVRDFDSMTNLAKDYRAKLD 81 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F I PEIV +++S DGTRK+L+R I G E+ETVYIPE+ RGTLCVSSQVGC+ Sbjct: 82 ATFEIALPEIVSKQVSADGTRKYLVR-----IAGGHEVETVYIPEEDRGTLCVSSQVGCT 136 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLTA EI+ Q++LAR LG++P G P R +SNIV+M Sbjct: 137 LTCSFCHTGTQKLVRNLTAGEIVGQIMLARDDLGEWPEPGTGTGEQGP---RLLSNIVLM 193 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV+ ++ IA D GLS S+RRITLSTSG VP IA+ EEIG ++A+S HA Sbjct: 194 GMGEPLYNFDNVRDAMKIAMDHEGLSMSRRRITLSTSGVVPEIAKCAEEIGCLMAVSFHA 253 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++RN LVPIN+++ + L+DA R YP LSN+ RITFEYVMLK +NDS DA L+++ Sbjct: 254 TTDEVRNKLVPINKRWNIATLLDALREYPRLSNSERITFEYVMLKDVNDSDEDARRLVRL 313 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + GIPAKINLIPFN WPG Y SD I F++ + ++GY+SPIRTPRG DI+AACGQL Sbjct: 314 IAGIPAKINLIPFNEWPGSPYERSDWSRIERFADIVYKAGYASPIRTPRGEDIMAACGQL 373 Query: 366 KSLSKRIPKVPRQEMQ 381 KS ++R K R+E++ Sbjct: 374 KSATERSRK-SRKEIE 388 >gi|294675798|ref|YP_003576413.1| radical SAM family protein [Rhodobacter capsulatus SB 1003] gi|294474618|gb|ADE84006.1| radical SAM family protein [Rhodobacter capsulatus SB 1003] Length = 393 Score = 432 bits (1110), Expect = e-119, Method: Compositional matrix adjust. Identities = 203/369 (55%), Positives = 280/369 (75%), Gaps = 10/369 (2%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ R++L +AL+ G P++ +MR Q+W+WIY G+RDF M++++++ R LL+ Sbjct: 24 KVNLVGLTRDQLRDALIAAGTPEKQAKMRVGQVWQWIYHWGVRDFGAMTNLAKDYRALLD 83 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +HF I PE+V ++S DGTRK+LLR I G E+E VYIPE++RGTLC+SSQVGC+ Sbjct: 84 RHFEIALPEVVTCQVSMDGTRKYLLR-----IAGGHEVEAVYIPEENRGTLCISSQVGCT 138 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLTA EI+ QV++AR LG++P + + R ISN+V+M Sbjct: 139 LTCSFCHTGTQKLVRNLTAGEIVGQVMVARDDLGEWPVPGEPKDET-----RLISNVVLM 193 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+NV+ ++ + D+ GL+ S+RRITLSTSG VP IAR EEIG +LAIS HA Sbjct: 194 GMGEPLYNFENVRDAMQVVMDNEGLTLSRRRITLSTSGVVPEIARTAEEIGCLLAISFHA 253 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ +R+ LVP+N+K+ ++ L+DA R YP LSN+ RITFEYVMLKG+NDS DA L+++ Sbjct: 254 TTDAVRDKLVPVNKKWNIKTLLDALRDYPRLSNSERITFEYVMLKGVNDSDDDARRLVRL 313 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 ++GIPAKINLIPFN WPG Y SD + I F++ + ++GY++PIRTPRG DI+AACGQL Sbjct: 314 IQGIPAKINLIPFNEWPGSPYKRSDWERIEAFADIVYKAGYAAPIRTPRGEDIMAACGQL 373 Query: 366 KSLSKRIPK 374 KS ++R K Sbjct: 374 KSATERARK 382 >gi|260429104|ref|ZP_05783081.1| radical SAM enzyme, Cfr family [Citreicella sp. SE45] gi|260419727|gb|EEX12980.1| radical SAM enzyme, Cfr family [Citreicella sp. SE45] Length = 398 Score = 431 bits (1109), Expect = e-119, Method: Compositional matrix adjust. Identities = 208/379 (54%), Positives = 279/379 (73%), Gaps = 8/379 (2%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +++G+ R+ L AL+++G P++ +MR +Q+W+WIY G+RDF M++++++ R L Sbjct: 23 KLNIVGLTRDALRAALIEMGTPEKQAKMRVNQVWQWIYHWGVRDFSVMTNLAKDYRAKLE 82 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 HF I PEIV +++S DGTRK+L+R I G E+ETVYIPE+ RGTLC+SSQVGC+ Sbjct: 83 AHFEIALPEIVSKQVSADGTRKYLVR-----IAGGHEVETVYIPEEGRGTLCISSQVGCT 137 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLTA EI+ QV+LAR L ++P G P R +SNIV+M Sbjct: 138 LTCSFCHTGTQKLVRNLTAGEIVGQVMLARDDLDEWPAPGTGTGEDGP---RLLSNIVLM 194 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV+ ++ I D G++ S+RRITLSTSG VP IAR EEIG ++A+S HA Sbjct: 195 GMGEPLYNFDNVRDAMKIVMDGEGIALSRRRITLSTSGVVPEIARCAEEIGCLMAVSFHA 254 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++RN LVPIN+++ +E L++A R YP LSN+ RITFEYVMLK +NDS DA L+ + Sbjct: 255 TTDEVRNRLVPINKRWNIEELLNALREYPRLSNSERITFEYVMLKDVNDSDADARRLVNL 314 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +KGIPAKINLIPFN WPG Y SD + I F++ + ++GY+SPIRTPRG DI+AACGQL Sbjct: 315 IKGIPAKINLIPFNEWPGAPYERSDWERIERFADIVHKAGYASPIRTPRGEDIMAACGQL 374 Query: 366 KSLSKRIPKVPRQEMQITG 384 KS ++R K Q TG Sbjct: 375 KSATERARKSRAQIAAETG 393 >gi|119713561|gb|ABL97613.1| radical SAM superfamily protein [uncultured marine bacterium EB0_39F01] Length = 390 Score = 431 bits (1109), Expect = e-119, Method: Compositional matrix adjust. Identities = 207/371 (55%), Positives = 279/371 (75%), Gaps = 13/371 (3%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 ++IG+ R+ L AL +IG P + ++MRT+QIW+W+YV+G ++F+ M+++S++ R+LL Q+ Sbjct: 25 NIIGLQRKALANALNEIGTPAKQIKMRTAQIWQWLYVKGAQNFEEMTNLSKDFRNLLVQN 84 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F+I PEIV +IS DGTRK+LLR + G E+E VYIPEK RGTLC+SSQ+GC+LT Sbjct: 85 FAITRPEIVTRQISKDGTRKYLLR-----VTGGHEVEAVYIPEKDRGTLCISSQIGCTLT 139 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C+FC+TGTQKLVRNLT EI+ Q+L+AR L ++ G + R +SNIV+MGM Sbjct: 140 CTFCHTGTQKLVRNLTPAEIVGQILIARDDLDEW-GKD-------AGQKRNVSNIVLMGM 191 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL N DNV+ ++ IA D+ G++ S+RRITLSTSG VP I R G EIG MLAIS HA + Sbjct: 192 GEPLYNTDNVRDAMLIAMDNEGIALSRRRITLSTSGVVPEIIRTGSEIGCMLAISFHATT 251 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 +++R++LVPINRK+ + L++ACR+YP LSN+ RITFEYVMLK INDS DA L+ ++ Sbjct: 252 DEVRDVLVPINRKHKIAELLEACRNYPKLSNSERITFEYVMLKNINDSDEDARRLVDLIS 311 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 GIPAKINLIPFNPWPG Y SD I F + + ++GY+SPIR PRG DI+AACGQLKS Sbjct: 312 GIPAKINLIPFNPWPGSGYERSDWNRIEAFGDIVNKAGYASPIRRPRGEDIMAACGQLKS 371 Query: 368 LSKRIPKVPRQ 378 ++R+ K +Q Sbjct: 372 ETQRVRKSAKQ 382 >gi|114769816|ref|ZP_01447426.1| radical SAM superfamily protein [alpha proteobacterium HTCC2255] gi|114549521|gb|EAU52403.1| radical SAM superfamily protein [alpha proteobacterium HTCC2255] Length = 390 Score = 431 bits (1108), Expect = e-119, Method: Compositional matrix adjust. Identities = 207/371 (55%), Positives = 279/371 (75%), Gaps = 13/371 (3%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 ++IG+ R+ L AL +IG P + ++MRT+QIW+W+YV+G ++F+ M+++S++ R+LL Q+ Sbjct: 25 NIIGLQRKALANALNEIGTPAKQIKMRTAQIWQWLYVKGAQNFEEMTNLSKDFRNLLVQN 84 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F+I PEIV +IS DGTRK+LLR + G E+E VYIPEK RGTLC+SSQ+GC+LT Sbjct: 85 FAITRPEIVTRQISKDGTRKYLLR-----VTGGHEVEAVYIPEKDRGTLCISSQIGCTLT 139 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C+FC+TGTQKLVRNLT EI+ Q+L+AR L ++ G + R +SNIV+MGM Sbjct: 140 CTFCHTGTQKLVRNLTPAEIVGQILIARDDLDEW-GKD-------AGQKRNVSNIVLMGM 191 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL N DNV+ ++ IA D+ G++ S+RRITLSTSG VP I R G EIG MLAIS HA + Sbjct: 192 GEPLYNTDNVRDAMLIAMDNEGIALSRRRITLSTSGVVPEIIRTGSEIGCMLAISFHATT 251 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 +++R++LVPINRK+ + L++ACR+YP LSN+ RITFEYVMLK INDS DA L+ ++ Sbjct: 252 DEVRDVLVPINRKHKIAELLEACRNYPKLSNSERITFEYVMLKNINDSDEDARRLVDLIS 311 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 GIPAKINLIPFNPWPG Y SD I F + + ++GY+SPIR PRG DI+AACGQLKS Sbjct: 312 GIPAKINLIPFNPWPGSGYERSDWNRIEAFGDIVNKAGYASPIRRPRGEDIMAACGQLKS 371 Query: 368 LSKRIPKVPRQ 378 ++R+ K +Q Sbjct: 372 ETQRVRKSAKQ 382 >gi|126733857|ref|ZP_01749604.1| hypothetical protein RCCS2_06859 [Roseobacter sp. CCS2] gi|126716723|gb|EBA13587.1| hypothetical protein RCCS2_06859 [Roseobacter sp. CCS2] Length = 391 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 207/378 (54%), Positives = 273/378 (72%), Gaps = 10/378 (2%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++LIG+ R+++ +AL+ +G ++ +MR QIW+WIY G+RDF M+++S++ R +L + Sbjct: 23 QNLIGLSRDQMRDALIAVGTAEKQAKMRVGQIWQWIYHWGVRDFSAMTNLSKDYRAMLAE 82 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 F I PE+V ++S DGTRK+L+R I G E+E VYIPE RGTLC+SSQVGC+L Sbjct: 83 TFVIALPEVVTRQVSDDGTRKYLVR-----IAGGHEVEVVYIPETDRGTLCISSQVGCTL 137 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 TCSFC+TGTQKLVRNLTA EI+ QV++AR L ++P E R +SNIV+MG Sbjct: 138 TCSFCHTGTQKLVRNLTAAEIIGQVMIARDDLDEWP-----EPGTRTEDTRLLSNIVLMG 192 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL NF+NV+ ++ IA D G+S S+RRITLSTSG VP IAR +EIG LA+S HA Sbjct: 193 MGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAQEIGCQLAVSFHAT 252 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 +ND+R+ LVPIN+++P+ L+DA R YP +SN+ RITFEYVML G+NDS DA LIK++ Sbjct: 253 TNDVRDRLVPINKRWPISDLLDALREYPKVSNSERITFEYVMLDGVNDSDEDAHRLIKLI 312 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +GIPAKINLIPFN WPG Y S I FSE I ++GY+SP+R PRG DI+AACGQLK Sbjct: 313 EGIPAKINLIPFNEWPGAPYKRSSNNRIRKFSEIIYQAGYASPVRKPRGEDIMAACGQLK 372 Query: 367 SLSKRIPKVPRQEMQITG 384 S ++R K Q Q G Sbjct: 373 SATERARKSKAQIAQEAG 390 >gi|84515768|ref|ZP_01003129.1| radical SAM superfamily protein [Loktanella vestfoldensis SKA53] gi|84510210|gb|EAQ06666.1| radical SAM superfamily protein [Loktanella vestfoldensis SKA53] Length = 392 Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust. Identities = 207/377 (54%), Positives = 274/377 (72%), Gaps = 10/377 (2%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L+GM R+ + +AL+ G P++ +MR QIW+W+Y G+RDF M++++++ R +L + Sbjct: 25 NLVGMTRDGMRDALIAAGTPEKQAKMRVGQIWQWVYHWGVRDFAKMTNLAKDYRAMLADN 84 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F + PE+V ++S DGTRK+L+R I G E+E VYIPE RGTLC+SSQVGC+LT Sbjct: 85 FVVALPEVVTRQVSGDGTRKYLVR-----IAGGHEVEVVYIPETDRGTLCISSQVGCTLT 139 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 CSFC+TGTQKLVRNLTA EI+ QVL+AR LG++P ++G V R +SNIV+MGM Sbjct: 140 CSFCHTGTQKLVRNLTAAEIIGQVLVARDDLGEWP----VQGTPKDEV-RLLSNIVLMGM 194 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL NF+NV+ ++ IA D G+ S+RRITLSTSG VP IAR +EIG LAIS HA + Sbjct: 195 GEPLYNFENVRDAMKIAMDPDGIQLSRRRITLSTSGVVPEIARTAQEIGCQLAISFHATT 254 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 +++R+ LVPIN+++PL L+DA R YP +SN+ RITFEYVML G+NDS DA LIK++ Sbjct: 255 DEVRDKLVPINKRWPLADLLDALRTYPKVSNSERITFEYVMLDGVNDSDADAHRLIKLID 314 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 GIPAKINLIPFN WPG Y S I F++ I ++GY+SPIRTPRG DI+AACGQLKS Sbjct: 315 GIPAKINLIPFNEWPGAPYKRSSNNRIRAFADIIYKAGYASPIRTPRGEDIMAACGQLKS 374 Query: 368 LSKRIPKVPRQEMQITG 384 ++R K Q Q G Sbjct: 375 ATERARKSKAQIAQEAG 391 >gi|149201312|ref|ZP_01878287.1| hypothetical protein RTM1035_16842 [Roseovarius sp. TM1035] gi|149145645|gb|EDM33671.1| hypothetical protein RTM1035_16842 [Roseovarius sp. TM1035] Length = 392 Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust. Identities = 203/364 (55%), Positives = 271/364 (74%), Gaps = 9/364 (2%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L+G+ R+ L E L+ G P++ +MR +QIW+WIY G+RDF M+++++ R L ++ Sbjct: 24 NLVGLTRDALREVLIAHGTPEKQAKMRVNQIWQWIYQWGVRDFHAMTNLAKAYRAQLAEN 83 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F + PE+V +++S DGTRK+L+R I G E+E VYIPE RGTLC+SSQVGC+LT Sbjct: 84 FVVTIPEVVSKQVSADGTRKYLVR-----IAGGHEVEVVYIPETDRGTLCISSQVGCTLT 138 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 CSFC+TGTQKLVRNLTA EI+ QV+LAR L ++P + G R ISNIV+MGM Sbjct: 139 CSFCHTGTQKLVRNLTAGEIIGQVMLARDDLNEWPKPGEPAG----ERPRLISNIVLMGM 194 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL NFDNV+ ++ IA D G+S S+RRITLSTSG VP IA+ EEIG +LA+S HA + Sbjct: 195 GEPLYNFDNVRDAMKIAMDGEGISLSRRRITLSTSGVVPEIAKTAEEIGCLLAVSFHATT 254 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 +++R+ LVPIN+++ + L+D R YP LSN+ RITFEYVMLKG+NDS DA L++++K Sbjct: 255 DEVRDTLVPINKRWNIATLLDTLREYPRLSNSERITFEYVMLKGVNDSDADARRLVQLIK 314 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 GIPAKINLIPFN WPG Y SD + I F++ I ++GY+SPIRTPRG DI+AACGQLKS Sbjct: 315 GIPAKINLIPFNEWPGSPYQRSDWERIERFADIIYKAGYASPIRTPRGEDIMAACGQLKS 374 Query: 368 LSKR 371 ++R Sbjct: 375 ATER 378 >gi|114762064|ref|ZP_01441532.1| radical SAM superfamily protein [Pelagibaca bermudensis HTCC2601] gi|114545088|gb|EAU48091.1| radical SAM superfamily protein [Roseovarius sp. HTCC2601] Length = 398 Score = 428 bits (1100), Expect = e-118, Method: Compositional matrix adjust. Identities = 205/379 (54%), Positives = 278/379 (73%), Gaps = 8/379 (2%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ RE L AL+++G P++ +MR +QIW+W+Y G+RDF M+++++E R L+ Sbjct: 23 KLNLVGLTREALRAALIEMGTPEKQAKMRVNQIWQWVYHWGVRDFAEMTNLAKEYRAKLD 82 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 HF I+ PEIV + +S DGTRK+L+R I G E+E VYIPE+ RGTLC+SSQVGC+ Sbjct: 83 AHFEILLPEIVSKNVSVDGTRKYLVR-----IAGGHEVEVVYIPEEGRGTLCISSQVGCT 137 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLTA EI+ Q++LAR L ++ + R +SNIV+M Sbjct: 138 LTCSFCHTGTQKLVRNLTAGEIVGQIMLARDDLDEW---PEPGTGTGEGGPRLLSNIVLM 194 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV+ ++ IA D G++ S+RRITLSTSG VP IA+ +EIG ++A+S HA Sbjct: 195 GMGEPLYNFDNVRDAMKIAMDGEGIALSRRRITLSTSGVVPEIAKCAKEIGCLMAVSFHA 254 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++RN LVPIN+++ +E L++A R YP LSN+ RITFEYVMLK +NDS DA L+ + Sbjct: 255 TTDEVRNKLVPINKRWNIETLLNALREYPRLSNSERITFEYVMLKDVNDSDADARRLVNL 314 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +KGIPAKINLIPFN WPG Y SD + I F++ + ++GY+SPIRTPRG DI+AACGQL Sbjct: 315 IKGIPAKINLIPFNEWPGAPYQRSDWERIERFADIVYKAGYASPIRTPRGEDIMAACGQL 374 Query: 366 KSLSKRIPKVPRQEMQITG 384 KS ++R K Q TG Sbjct: 375 KSATERARKSRAQIAAETG 393 >gi|161170314|gb|ABX59284.1| predicted FeS cluster redox protein [uncultured marine bacterium EB000_55B11] gi|297183841|gb|ADI19964.1| hypothetical protein [uncultured marine bacterium EB000_55B11] Length = 390 Score = 427 bits (1099), Expect = e-118, Method: Compositional matrix adjust. Identities = 206/371 (55%), Positives = 278/371 (74%), Gaps = 13/371 (3%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 ++IG+ R+ L AL +IG P + ++MRT+QIW+W+YV+G ++F+ M+++S++ R+LL Q+ Sbjct: 25 NIIGLQRKALANALNEIGTPAKQIKMRTAQIWQWLYVKGAQNFEEMTNLSKDFRNLLVQN 84 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F+I PEIV +IS DGTRK+LLR + G E+E VYIPEK RGTLC+SSQ+GC+LT Sbjct: 85 FAITRPEIVTRQISKDGTRKYLLR-----VTGGHEVEAVYIPEKDRGTLCISSQIGCTLT 139 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C+FC+TGTQKLVRNLT EI+ Q+L+AR L ++ G + R +SNIV+MGM Sbjct: 140 CTFCHTGTQKLVRNLTPAEIVGQILIARDDLDEW-GKD-------AGQKRNVSNIVLMGM 191 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL N DNV+ ++ IA D+ G++ S+RRITLSTSG VP I R G EIG MLAIS HA + Sbjct: 192 GEPLYNTDNVRDAMLIAMDNEGIALSRRRITLSTSGVVPEIIRTGSEIGCMLAISFHATT 251 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 +++R++LVPINRK+ + L++ACR+YP LSN+ RITFEYVMLK INDS DA L+ ++ Sbjct: 252 DEVRDVLVPINRKHKIAELLEACRNYPKLSNSERITFEYVMLKNINDSDEDARRLVDLIS 311 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 GIPAKINLIPFNPWPG Y SD I F + + ++GY+SPIR PRG DI+AA GQLKS Sbjct: 312 GIPAKINLIPFNPWPGSGYERSDWNRIEAFGDIVNKAGYASPIRRPRGEDIMAAXGQLKS 371 Query: 368 LSKRIPKVPRQ 378 ++R+ K +Q Sbjct: 372 ETQRVRKSAKQ 382 >gi|84500532|ref|ZP_00998781.1| radical SAM superfamily protein [Oceanicola batsensis HTCC2597] gi|84391485|gb|EAQ03817.1| radical SAM superfamily protein [Oceanicola batsensis HTCC2597] Length = 398 Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust. Identities = 201/370 (54%), Positives = 277/370 (74%), Gaps = 18/370 (4%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +++G+ RE L +AL+ +G P++ RMR +Q+W+WIY G+RDF M++++++ R L Sbjct: 24 KPNIVGLTREALRQALIDMGTPEKQARMRVNQVWQWIYHWGVRDFSQMTNLARDYRGKLT 83 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + F I PE+V +++S DGTRK+L+R I G E+ETVYIPE RGTLC+SSQVGC+ Sbjct: 84 ETFRIDLPEMVSKQVSADGTRKYLMR-----IAGGHEVETVYIPEADRGTLCISSQVGCT 138 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK----ISN 181 LTCSFC+TGTQ+LVRNL+A+EI+ Q+++AR LG++P +P ++ +SN Sbjct: 139 LTCSFCHTGTQRLVRNLSADEIVGQIMVARDDLGEWP---------VPGAPKREERLLSN 189 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 IV+MGMGEPL NFDNV+ ++ IA D G+S S+RRITLSTSG VP IAR EEIG +LA+ Sbjct: 190 IVLMGMGEPLYNFDNVRDAMKIAMDGEGISLSRRRITLSTSGVVPEIARCAEEIGCLLAV 249 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 S HA ++++R+ LVPIN+++ +E L+ A R YP LSN+ RITFEYVMLK +NDS DA Sbjct: 250 SFHATTDEVRDRLVPINKRWNIETLLTALRDYPRLSNSERITFEYVMLKDVNDSDADARR 309 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L+K++ GIPAKINLIPFN WPG Y SD I +F++ + ++GY+SPIRTPRG DI+AA Sbjct: 310 LVKLISGIPAKINLIPFNEWPGAPYERSDWSRIESFADIVHKAGYASPIRTPRGEDIMAA 369 Query: 362 CGQLKSLSKR 371 CGQLKS ++R Sbjct: 370 CGQLKSATER 379 >gi|310817045|ref|YP_003965009.1| Ribosomal RNA large subunit methyltransferase N [Ketogulonicigenium vulgare Y25] gi|308755780|gb|ADO43709.1| Ribosomal RNA large subunit methyltransferase N [Ketogulonicigenium vulgare Y25] Length = 409 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 199/368 (54%), Positives = 274/368 (74%), Gaps = 10/368 (2%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L+GM R+++ +A++ IG+P++ +MR Q+W+WIYV G+RDF M+++++++R L + Sbjct: 38 NLVGMTRDQMRQAMIDIGVPEKQAKMRMGQLWQWIYVWGVRDFALMTNLAKDLRAKLAET 97 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 + + PE+V ++S DGTRK+L+R I G E+E VYIPE RGTLCVSSQVGC+LT Sbjct: 98 YVLAVPEVVTRQVSEDGTRKYLVR-----IAGGHEVEVVYIPETDRGTLCVSSQVGCTLT 152 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIVMMG 186 CSFC+TGTQKLVRNLT EI+ QV++AR LG++P G + +G R++SNIV+MG Sbjct: 153 CSFCHTGTQKLVRNLTTAEIVGQVMVARDDLGEWPH----PGQDVSELGPRRLSNIVLMG 208 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL NF+NV+ ++ I D G+ S+RRITLSTSG VP IAR EIG LA+S HA Sbjct: 209 MGEPLYNFENVRDAMKICMDPEGIQLSRRRITLSTSGIVPEIARTAVEIGCQLAVSFHAT 268 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++D+RN+LVP+NRK+ +E L+ A R YP LSN+ RITFEYVML+G+NDS DA L++++ Sbjct: 269 TDDVRNVLVPVNRKWNIEALLTALREYPALSNSERITFEYVMLRGVNDSDDDARRLVELI 328 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +GIPAKINLIPFN WPG Y S + I F + + R+GY+SP+R PRG DI+AACGQLK Sbjct: 329 RGIPAKINLIPFNEWPGSPYQRSTKARIEAFGDIVNRAGYASPVRRPRGEDIMAACGQLK 388 Query: 367 SLSKRIPK 374 S ++R K Sbjct: 389 SATERARK 396 >gi|86139440|ref|ZP_01058009.1| radical SAM enzyme, Cfr family protein [Roseobacter sp. MED193] gi|85823943|gb|EAQ44149.1| radical SAM enzyme, Cfr family protein [Roseobacter sp. MED193] Length = 395 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 203/373 (54%), Positives = 272/373 (72%), Gaps = 9/373 (2%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+GM R+ + +AL+ IG+P++ +MR QIW+WIY G RDF M+++S+ +R L Sbjct: 23 KTNLVGMTRDAMRQALVGIGVPEKQAKMRVGQIWQWIYQWGKRDFSEMTNLSKALRAQLE 82 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + F I PE+V +++S DGTRK+L+R I G E+E VYIPE RGTLC+SSQVGC+ Sbjct: 83 EGFEIAIPEVVSKQVSEDGTRKYLVR-----IAGGHEVEVVYIPETDRGTLCISSQVGCT 137 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLTA EI+ QV++AR L ++P + G P R +SNIV+M Sbjct: 138 LTCSFCHTGTQKLVRNLTAAEIIGQVMMARDDLDEWP----VPGTRNPDEARLLSNIVLM 193 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV+ ++ IA D G+ S+RRITLSTSG VP IAR +EIG +LA+S HA Sbjct: 194 GMGEPLYNFDNVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAQEIGCLLAVSFHA 253 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++R+ LVPIN+++ +E L++A R YP L+N+ RITFEYVML +NDS DA L+K+ Sbjct: 254 TTDEVRDKLVPINKRWNIEALLEALRAYPRLANSERITFEYVMLDHVNDSKEDAHRLVKL 313 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 ++GIPAKINLIPFN WPG Y S I F++ I +GY+SPIR PRG DI+AACGQL Sbjct: 314 IEGIPAKINLIPFNEWPGSPYQRSSNNRIHAFADIIHDAGYASPIRKPRGEDIMAACGQL 373 Query: 366 KSLSKRIPKVPRQ 378 KS ++R K +Q Sbjct: 374 KSATERARKSRKQ 386 >gi|85706112|ref|ZP_01037207.1| radical SAM superfamily protein [Roseovarius sp. 217] gi|85669276|gb|EAQ24142.1| radical SAM superfamily protein [Roseovarius sp. 217] Length = 392 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 204/367 (55%), Positives = 271/367 (73%), Gaps = 9/367 (2%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L+G+ R+ L EAL+ G P++ +MR +QIW+WIY G+RDF M+++++ R L ++ Sbjct: 24 NLVGLTRDALREALIAHGTPEKQAKMRVNQIWQWIYQWGVRDFHAMTNLAKAYRAQLAEN 83 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F + PE+V +++S DGTRK+L+R I G E+E VYIPE RGTLC+SSQVGC+LT Sbjct: 84 FVVTIPEVVSKQVSTDGTRKYLVR-----IAGGHEVEVVYIPETDRGTLCISSQVGCTLT 138 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 CSFC+TGTQKLVRNLTA EI+ QV+LAR L ++P G + R ISNIV+MGM Sbjct: 139 CSFCHTGTQKLVRNLTAGEIIGQVMLARDDLNEWPR----PGEPVGERPRLISNIVLMGM 194 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL NFDNV+ ++ IA D G+S S+RRITLSTSG VP IA+ +EIG +LA+S HA + Sbjct: 195 GEPLYNFDNVRDAMKIAMDGEGISLSRRRITLSTSGVVPEIAKTAQEIGCLLAVSFHATT 254 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 + +R+ LVPIN+K+ + L+D R YP LSN+ RITFEYVMLK +NDS DA L++++K Sbjct: 255 DAVRDALVPINKKWNIATLLDTLRDYPRLSNSERITFEYVMLKDVNDSDADARRLVQLIK 314 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 GIPAKINLIPFN WPG Y SD+ I F++ I ++GY+SPIRTPRG DI+AACGQLKS Sbjct: 315 GIPAKINLIPFNEWPGSPYERSDRDRIQRFADIIYKAGYASPIRTPRGEDIMAACGQLKS 374 Query: 368 LSKRIPK 374 ++R K Sbjct: 375 ATERARK 381 >gi|315497788|ref|YP_004086592.1| radical sam enzyme, cfr family [Asticcacaulis excentricus CB 48] gi|315415800|gb|ADU12441.1| radical SAM enzyme, Cfr family [Asticcacaulis excentricus CB 48] Length = 411 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 205/381 (53%), Positives = 277/381 (72%), Gaps = 16/381 (4%) Query: 6 KESLIGMMREELEEALLKIGI-PQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K ++ G+ R+ L AL + G+ +R +MR QIW+W++ G DF M+DI ++ R L Sbjct: 16 KVNITGLTRDGLIAALKESGVVEERKAKMRAQQIWRWVHHYGFTDFDKMTDIGKDQRGPL 75 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVG 123 ++ F++ PE+V+ ++S DGTRKWL+R + +E+ETVYIP+ R G LCVSSQVG Sbjct: 76 SEKFTLARPEVVERQVSKDGTRKWLIR-----MAPGIEVETVYIPDVGRSGALCVSSQVG 130 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L CSFC+TGTQ+LVRNLTA EI+ QV +AR LG++P P R++SNIV Sbjct: 131 CTLNCSFCHTGTQRLVRNLTAAEIVAQVQVARDDLGEWPS---------PKEDRRLSNIV 181 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MGMGEPL N DNV ++ I SD+ G++ S+RRIT+STSG VP + +G+ MLAISL Sbjct: 182 FMGMGEPLYNLDNVADAIDIISDNEGIAISRRRITVSTSGVVPELDALGKRTAAMLAISL 241 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++LR++LVPIN+KYPL+ L+ A R YP LSNARR+TFEYVMLKG+NDSP +A LI Sbjct: 242 HATNDELRDVLVPINKKYPLKDLMAAIRAYPDLSNARRVTFEYVMLKGVNDSPAEARELI 301 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K++KGIPAKINLIPFNPWPG +Y CSD + I F+ + ++GY+SPIRTPRG DILAACG Sbjct: 302 KLIKGIPAKINLIPFNPWPGTDYQCSDWRTIEAFAAILNKAGYASPIRTPRGRDILAACG 361 Query: 364 QLKSLSKRIPKVPRQEMQITG 384 QLKS S+++ ++ Q+ G Sbjct: 362 QLKSESEKVRASALRKAQVEG 382 >gi|209965840|ref|YP_002298755.1| radical SAM enzyme, Cfr family [Rhodospirillum centenum SW] gi|209959306|gb|ACI99942.1| radical SAM enzyme, Cfr family [Rhodospirillum centenum SW] Length = 399 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 205/364 (56%), Positives = 268/364 (73%), Gaps = 17/364 (4%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L+G+ RE+LE + G + R Q+W+WIY RG+ DF M+++++ R L +H Sbjct: 20 NLVGLSREDLEAEFARAGFE----KFRARQVWQWIYNRGVTDFAAMTNLAKPARERLAEH 75 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 + I P V + S DGTRKWL R PA EIETV+IPE+ RGTLCVSSQVGC++T Sbjct: 76 YVIERPLAVKDLQSDDGTRKWLCRMPA----DGQEIETVHIPEEDRGTLCVSSQVGCTMT 131 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC+TGTQ+LVRNLT+ EI+ QV+LAR LG++P P+ GR +SNIVMMGM Sbjct: 132 CRFCHTGTQRLVRNLTSAEIVGQVMLARDHLGEWPS---------PAEGRMLSNIVMMGM 182 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL N++NV ++L I D G++ SKRRITLSTSG VP + R G E+GV LA+SLHAV+ Sbjct: 183 GEPLFNYENVARALKIVMDGEGIAISKRRITLSTSGVVPMMRRCGAELGVNLAVSLHAVT 242 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 ++LRN +VPIN+KYP+ L+DA R YPGL+NARR+T+EYVMLKG+NDS DA L+++++ Sbjct: 243 DELRNRIVPINKKYPIAELMDAVRTYPGLNNARRVTWEYVMLKGVNDSLADARALVRLIR 302 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 GIP+KINLIPFNPWPG + CSD IV FS+ + +GY+SPIR PRG DI+AACGQLKS Sbjct: 303 GIPSKINLIPFNPWPGAPFECSDWDQIVRFSDFVNDAGYASPIRAPRGKDIMAACGQLKS 362 Query: 368 LSKR 371 S+R Sbjct: 363 ESQR 366 >gi|89070636|ref|ZP_01157916.1| radical SAM superfamily protein [Oceanicola granulosus HTCC2516] gi|89043783|gb|EAR49985.1| radical SAM superfamily protein [Oceanicola granulosus HTCC2516] Length = 392 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 206/369 (55%), Positives = 272/369 (73%), Gaps = 8/369 (2%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + +L+G+ R L EAL G P + VRMR +Q+W+WIY G+RDF+ M+++++ R LL Sbjct: 23 RTNLVGLTRPALAEALRAAGTPDKQVRMRVNQVWQWIYHWGVRDFEAMTNLAKPYRALLA 82 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++F I PEIV ++S DGTRK+L+R I G E+ETVYIPE+ RGTLC+SSQVGC+ Sbjct: 83 ENFEIALPEIVSRQVSNDGTRKYLVR-----IAGGHEVETVYIPEEDRGTLCISSQVGCT 137 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLT EI+ Q++LAR LG++P G P R +SNIV+M Sbjct: 138 LTCSFCHTGTQKLVRNLTPAEIVGQIMLARDDLGEWPAPGTGTGESGP---RLLSNIVLM 194 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFD V+ ++ IA D G++ S+RRITLSTSG V IAR EEIG MLA+S HA Sbjct: 195 GMGEPLYNFDAVRDAMKIAMDGEGIALSRRRITLSTSGVVAEIARCAEEIGCMLAVSFHA 254 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++R+ LVPIN+K+ +E L+++ + YP LSN+ RITFEYVMLK +NDS DA L+K+ Sbjct: 255 TTDEVRDRLVPINKKWNIETLLESLKAYPKLSNSERITFEYVMLKDVNDSDDDARRLVKL 314 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 ++GIPAKINLIPFN WPG Y S I F++ I ++GY+SPIRTPRG DI+AACGQL Sbjct: 315 IEGIPAKINLIPFNEWPGAPYERSSNNRIRAFADIIYKAGYASPIRTPRGEDIMAACGQL 374 Query: 366 KSLSKRIPK 374 KS ++R K Sbjct: 375 KSATERARK 383 >gi|205829857|sp|Q28VS6|RLMN_JANSC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase Length = 392 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 205/372 (55%), Positives = 274/372 (73%), Gaps = 11/372 (2%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +LIG+ R+ L AL++ G P++ +MRT QIW+W+Y +G+RDF M+++S++ R +L + Sbjct: 24 NLIGLTRDGLRAALIEAGTPEKQAKMRTGQIWQWLYQKGVRDFASMTNLSKDYRAMLAET 83 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F PE+V ++S DGTRK+L+R I G E+E VYIPE RGTLC+SSQVGC+LT Sbjct: 84 FVADVPEVVSRQVSADGTRKYLVR-----IAGGHEVEVVYIPEVDRGTLCISSQVGCTLT 138 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF-PGCEDIEGMVIPSVGRKISNIVMMG 186 CSFC+TGTQKLVRNLTA EI+ QV+LAR L ++ P E + R +SNIV+MG Sbjct: 139 CSFCHTGTQKLVRNLTAGEIIGQVMLARDDLDEWVPTGEGSDAK-----PRLVSNIVLMG 193 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL NF+NV+ ++ IA D G+S S+RRITLSTSG VP IA+ +EIG LA+S HA Sbjct: 194 MGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIAKTAQEIGCQLAVSFHAT 253 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++D+R+ LVPIN+++P+ L+DA R YP +SN+ RITFEYVMLK +NDS DA L++++ Sbjct: 254 TDDVRDKLVPINKRWPIADLLDALRDYPRVSNSERITFEYVMLKDVNDSDADARRLVQLI 313 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 KGIPAKINLIPFN WPG Y SD I F++ I ++GY+SPIRTPRG DI+AACGQLK Sbjct: 314 KGIPAKINLIPFNEWPGAPYERSDWARIEAFADIIYKAGYASPIRTPRGEDIMAACGQLK 373 Query: 367 SLSKRIPKVPRQ 378 S ++R K +Q Sbjct: 374 SATERARKSRKQ 385 >gi|329890963|ref|ZP_08269306.1| radical SAM superfamily protein [Brevundimonas diminuta ATCC 11568] gi|328846264|gb|EGF95828.1| radical SAM superfamily protein [Brevundimonas diminuta ATCC 11568] Length = 387 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 204/367 (55%), Positives = 270/367 (73%), Gaps = 16/367 (4%) Query: 8 SLIGMMREELEEALLKIGI-PQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L G+ R+EL +AL+ I P +MR SQ+W+WI+ G+ DF MSD++++ R L + Sbjct: 19 NLSGLTRDELRQALIDAEICPPEKAKMRASQVWRWIHHYGVTDFALMSDVAKDTRAKLAE 78 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCS 125 F++ PEIV+ ++S DGTRKWL+R +EIETVYIP+ R G LCVSSQVGC+ Sbjct: 79 AFTLARPEIVERQVSKDGTRKWLIR-----TAPGIEIETVYIPDVGRAGALCVSSQVGCT 133 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC+TGTQKLVRNLT EI+ QV +AR L ++P P R++SNIV M Sbjct: 134 LNCTFCHTGTQKLVRNLTTAEIVAQVQVARDDLDEWPS---------PKEDRRLSNIVFM 184 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N D+V ++ I SD+ G++ S+RRIT+STSG VP + +GE MLAISLHA Sbjct: 185 GMGEPLYNLDHVANAIDIISDNEGIALSRRRITVSTSGVVPQLNALGERTAAMLAISLHA 244 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ LR+ LVP+N+KYPL+ L+ A R YPGLSNARR+TFEYVMLKG+NDSP +A LIK+ Sbjct: 245 TNDPLRDQLVPLNKKYPLDQLMAAIRAYPGLSNARRVTFEYVMLKGVNDSPAEARALIKL 304 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 ++GIP+K+NLIPFNPWPG +Y CSD K I TF+ + ++GY+SPIRTPRG DILAACGQL Sbjct: 305 IEGIPSKVNLIPFNPWPGTDYQCSDWKTIETFAAILNKAGYASPIRTPRGRDILAACGQL 364 Query: 366 KSLSKRI 372 KS S+++ Sbjct: 365 KSESEKL 371 >gi|149913266|ref|ZP_01901800.1| hypothetical protein RAZWK3B_04720 [Roseobacter sp. AzwK-3b] gi|149813672|gb|EDM73498.1| hypothetical protein RAZWK3B_04720 [Roseobacter sp. AzwK-3b] Length = 382 Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust. Identities = 203/371 (54%), Positives = 275/371 (74%), Gaps = 9/371 (2%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L+G+ R+ L E L++ G P++ +MR +QIW+W+Y G+RDF M+++S+ R +L ++ Sbjct: 13 NLVGLTRDRLREVLIEAGTPEKQAKMRVNQIWQWLYQWGVRDFHAMTNLSKTYRQMLAEN 72 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F I PE+V +++S DGTRK+L+R I G E+E VYIPE RGTLC+SSQVGC+LT Sbjct: 73 FVIEIPEMVSKQVSADGTRKYLVR-----IAGGHEVEVVYIPETDRGTLCISSQVGCTLT 127 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 CSFC+TGTQKLVRNL+A EI+ QV++AR L ++P + G R +SNIV+MGM Sbjct: 128 CSFCHTGTQKLVRNLSAGEIVGQVMMARDDLDEWPRPGEGAG----ERPRLLSNIVLMGM 183 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL NFDNV+ ++ IA D G+S S+RRITLSTSG VP IA+ EEIG MLA+S HA + Sbjct: 184 GEPLYNFDNVRDAMKIAMDGEGISLSRRRITLSTSGVVPEIAKTAEEIGCMLAVSFHATT 243 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 +++R+ LVPIN+K+ +E L+ A R YP LSN+ RITFEYVMLK +NDS DA L++++K Sbjct: 244 DEVRDKLVPINKKWNIETLLGALREYPRLSNSERITFEYVMLKDVNDSDADARRLVQLIK 303 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 GIPAKINLIPFN WPG + SD I F++ + ++GY+SPIRTPRG DI+AACGQLKS Sbjct: 304 GIPAKINLIPFNEWPGAPHQRSDWDRIEKFADIVYKAGYASPIRTPRGEDIMAACGQLKS 363 Query: 368 LSKRIPKVPRQ 378 ++R K +Q Sbjct: 364 ATERARKSRKQ 374 >gi|89052760|ref|YP_508211.1| hypothetical protein Jann_0269 [Jannaschia sp. CCS1] gi|88862309|gb|ABD53186.1| 23S rRNA m(2)A-2503 methyltransferase [Jannaschia sp. CCS1] Length = 410 Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust. Identities = 205/372 (55%), Positives = 274/372 (73%), Gaps = 11/372 (2%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +LIG+ R+ L AL++ G P++ +MRT QIW+W+Y +G+RDF M+++S++ R +L + Sbjct: 42 NLIGLTRDGLRAALIEAGTPEKQAKMRTGQIWQWLYQKGVRDFASMTNLSKDYRAMLAET 101 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F PE+V ++S DGTRK+L+R I G E+E VYIPE RGTLC+SSQVGC+LT Sbjct: 102 FVADVPEVVSRQVSADGTRKYLVR-----IAGGHEVEVVYIPEVDRGTLCISSQVGCTLT 156 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF-PGCEDIEGMVIPSVGRKISNIVMMG 186 CSFC+TGTQKLVRNLTA EI+ QV+LAR L ++ P E + R +SNIV+MG Sbjct: 157 CSFCHTGTQKLVRNLTAGEIIGQVMLARDDLDEWVPTGEGSDAK-----PRLVSNIVLMG 211 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL NF+NV+ ++ IA D G+S S+RRITLSTSG VP IA+ +EIG LA+S HA Sbjct: 212 MGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIAKTAQEIGCQLAVSFHAT 271 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++D+R+ LVPIN+++P+ L+DA R YP +SN+ RITFEYVMLK +NDS DA L++++ Sbjct: 272 TDDVRDKLVPINKRWPIADLLDALRDYPRVSNSERITFEYVMLKDVNDSDADARRLVQLI 331 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 KGIPAKINLIPFN WPG Y SD I F++ I ++GY+SPIRTPRG DI+AACGQLK Sbjct: 332 KGIPAKINLIPFNEWPGAPYERSDWARIEAFADIIYKAGYASPIRTPRGEDIMAACGQLK 391 Query: 367 SLSKRIPKVPRQ 378 S ++R K +Q Sbjct: 392 SATERARKSRKQ 403 >gi|163738104|ref|ZP_02145520.1| hypothetical protein RGBS107_06819 [Phaeobacter gallaeciensis BS107] gi|161388720|gb|EDQ13073.1| hypothetical protein RGBS107_06819 [Phaeobacter gallaeciensis BS107] Length = 394 Score = 424 bits (1091), Expect = e-117, Method: Compositional matrix adjust. Identities = 204/375 (54%), Positives = 274/375 (73%), Gaps = 14/375 (3%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ R++L E L+ G P++ +MR QIW+WIY G RDF M+++++ R L+ Sbjct: 23 KINLVGLTRDQLRETLIAHGTPEKQAKMRVGQIWQWIYQWGKRDFAEMTNLAKAYRADLD 82 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +HF I PE+V +++S DGTRK+L+R I G E+E VYIPE+ RGTLC+SSQVGC+ Sbjct: 83 EHFEIATPEVVSKQVSTDGTRKYLVR-----IAGGHEVEVVYIPEEGRGTLCISSQVGCT 137 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP--GCEDIEGMVIPSVGRKISNIV 183 LTCSFC+TGTQKLVRNLTA EI+ Q+++AR L ++P G E R +SNIV Sbjct: 138 LTCSFCHTGTQKLVRNLTAAEIVGQIMMARDDLDEWPVPGAPKDET-------RLLSNIV 190 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 +MGMGEPL NF+NV+ ++ IA D G+S S+RRITLSTSG VP IAR EEIG +LA+S Sbjct: 191 LMGMGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCLLAVSF 250 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA ++++R+ LVPIN+++ +E L++A R YP L+N+ RITFEYVML G+NDS DA L+ Sbjct: 251 HATTDEVRDKLVPINKRWNIEALLEALRAYPRLTNSERITFEYVMLNGVNDSDEDAHRLV 310 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +++KGIPAK+NLIPFN WPG Y S I F+ I ++GY+SPIRTPRG DILAACG Sbjct: 311 ELIKGIPAKVNLIPFNEWPGSPYTRSSNNRIHAFANIIYQAGYASPIRTPRGEDILAACG 370 Query: 364 QLKSLSKRIPKVPRQ 378 QLKS ++R K +Q Sbjct: 371 QLKSATERARKSRKQ 385 >gi|163742501|ref|ZP_02149887.1| radical SAM enzyme, Cfr family protein [Phaeobacter gallaeciensis 2.10] gi|161384086|gb|EDQ08469.1| radical SAM enzyme, Cfr family protein [Phaeobacter gallaeciensis 2.10] Length = 394 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 203/375 (54%), Positives = 274/375 (73%), Gaps = 14/375 (3%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ R++L E L+ G P++ +MR QIW+WIY G RDF M+++++ R L+ Sbjct: 23 KINLVGLTRDQLRETLIAHGTPEKQAKMRVGQIWQWIYQWGKRDFAEMTNLAKAYRADLD 82 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +HF I PE++ +++S DGTRK+L+R I G E+E VYIPE+ RGTLC+SSQVGC+ Sbjct: 83 EHFEIATPEVMSKQVSTDGTRKYLVR-----IAGGHEVEVVYIPEEGRGTLCISSQVGCT 137 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP--GCEDIEGMVIPSVGRKISNIV 183 LTCSFC+TGTQKLVRNLTA EI+ Q+++AR L ++P G E R +SNIV Sbjct: 138 LTCSFCHTGTQKLVRNLTAAEIVGQIMMARDDLDEWPVPGAPKDET-------RLLSNIV 190 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 +MGMGEPL NF+NV+ ++ IA D G+S S+RRITLSTSG VP IAR EEIG +LA+S Sbjct: 191 LMGMGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCLLAVSF 250 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA ++++R+ LVPIN+++ +E L++A R YP L+N+ RITFEYVML G+NDS DA L+ Sbjct: 251 HATTDEVRDKLVPINKRWNIEALLEALRAYPRLTNSERITFEYVMLNGVNDSDEDAHRLV 310 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +++KGIPAK+NLIPFN WPG Y S I F+ I ++GY+SPIRTPRG DILAACG Sbjct: 311 ELIKGIPAKVNLIPFNEWPGSPYTRSSNNRIHAFANIIYQAGYASPIRTPRGEDILAACG 370 Query: 364 QLKSLSKRIPKVPRQ 378 QLKS ++R K +Q Sbjct: 371 QLKSATERARKSRKQ 385 >gi|126727284|ref|ZP_01743120.1| radical SAM enzyme, Cfr family protein [Rhodobacterales bacterium HTCC2150] gi|126703493|gb|EBA02590.1| radical SAM enzyme, Cfr family protein [Rhodobacterales bacterium HTCC2150] Length = 392 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 207/370 (55%), Positives = 272/370 (73%), Gaps = 11/370 (2%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ R+ + +AL+ G+P++ +MRT QIW WIY +G+R F M+++S+ R L Sbjct: 22 KINLVGLTRDGMRDALIAAGLPEKQGKMRTGQIWAWIYEKGVRTFDVMTNLSKGYRAELA 81 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + F I PE+V +IS DGTRK+L+R I G E+E VYIPEK RGTLC+SSQVGC+ Sbjct: 82 ESFEIAVPEVVTRQISEDGTRKYLVR-----IAGGHEVEVVYIPEKDRGTLCISSQVGCT 136 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV-GRKISNIVM 184 LTCSFC+TGTQKLVRNLTA EI+ QV++AR LG++P E P+V R +SNIV+ Sbjct: 137 LTCSFCHTGTQKLVRNLTAGEIIGQVMIARDDLGEWP-----ELAQSPNVEARLLSNIVL 191 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NF++V+ ++ IA D G+S S+RRITLSTSG VP IAR +EIG MLA+S H Sbjct: 192 MGMGEPLYNFESVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTADEIGCMLAVSFH 251 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++D+R+ LVPIN+K+ +E L+DA R YP SN+ RITFEYVML G+NDS DA L++ Sbjct: 252 ATTDDVRDKLVPINKKWNIEALLDALRAYPKASNSERITFEYVMLNGVNDSDEDAHRLVE 311 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 ++KGIPAKINLIPFN WPG Y S I F++ + +GYSSP+R PRG DI+AACGQ Sbjct: 312 LIKGIPAKINLIPFNEWPGAPYQRSSNNRIRAFADIVFNAGYSSPVRRPRGEDIMAACGQ 371 Query: 365 LKSLSKRIPK 374 LKS ++R K Sbjct: 372 LKSETERARK 381 >gi|254439770|ref|ZP_05053264.1| radical SAM enzyme, Cfr family [Octadecabacter antarcticus 307] gi|198255216|gb|EDY79530.1| radical SAM enzyme, Cfr family [Octadecabacter antarcticus 307] Length = 394 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 202/371 (54%), Positives = 274/371 (73%), Gaps = 8/371 (2%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +++G+ R++L +AL+ +G+ ++ +MR +Q+W+W+Y G+RDF+ M+++S++ R L +H Sbjct: 25 NIVGLTRDQLRDALIGVGVTEKQAKMRVNQVWQWLYHWGVRDFEVMTNLSKDFRTTLAEH 84 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F I PE+V + +S DGTRK+L+R I G E+E VYIPEK RGTLC+SSQVGC+LT Sbjct: 85 FKIELPEVVTKDVSTDGTRKYLVR-----IAGGHEVEVVYIPEKDRGTLCISSQVGCTLT 139 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 CSFC+TGTQKLVRNLTA EI+ QV+LAR L ++P G P R +SNIV+MGM Sbjct: 140 CSFCHTGTQKLVRNLTAGEIIGQVMLARDDLNEWPEPGQGTGENGP---RLLSNIVLMGM 196 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL NF+NV+ ++ IA D G++ S+RRITLSTSG VP I R +EIG MLAIS H + Sbjct: 197 GEPLYNFENVRDAMKIAMDGEGIALSRRRITLSTSGVVPEIHRTADEIGCMLAISFHGTT 256 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 +++R+ LVPIN+K+ LE L++A YP +SN+ RITFEYVMLK +NDS DA L+K+++ Sbjct: 257 DEIRDKLVPINKKWNLEKLLEALAAYPKVSNSERITFEYVMLKDVNDSDEDARRLVKLIE 316 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 GIPAKINLIPFN WPG Y SD I F++ I +GY+SPIR PRG DI+AACGQLKS Sbjct: 317 GIPAKINLIPFNEWPGAPYKRSDADRIKAFADIIYNAGYASPIRRPRGEDIMAACGQLKS 376 Query: 368 LSKRIPKVPRQ 378 ++R K +Q Sbjct: 377 ATERSRKSRKQ 387 >gi|205829860|sp|A8LNF0|RLMN_DINSH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase Length = 394 Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust. Identities = 211/379 (55%), Positives = 275/379 (72%), Gaps = 9/379 (2%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ R EL EAL G P++ V+MR +QIW+W+Y RG+RDF M+++++ R LL Sbjct: 23 KRNLVGLTRPELAEALAAAGTPEKQVKMRVNQIWQWLYERGVRDFNDMTNLAKPYRALLA 82 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F I PE+V +S DGTRK+L+R I G E+E VYIPE+ RGTLCVSSQVGC+ Sbjct: 83 DQFEIAVPEVVSRHVSEDGTRKYLVR-----IAGGHEVEVVYIPEEDRGTLCVSSQVGCT 137 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLTA EI+ Q+++AR LG++P + G + R +SNIV+M Sbjct: 138 LTCSFCHTGTQKLVRNLTAGEIVGQIMIARDDLGEWP----LPGRNPKNETRLLSNIVLM 193 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+ V+ ++ IA D G+S S+RRITLSTSG VP IAR EEIG MLA+S HA Sbjct: 194 GMGEPLYNFEAVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCMLAVSFHA 253 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++R+ LVPIN+++ + L+DA R YP SN+ RITFEYVMLKG+NDS DA L+++ Sbjct: 254 TTDEVRDKLVPINKRWNIATLLDALRDYPKASNSERITFEYVMLKGVNDSDEDARRLVEL 313 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +KGIPAKINLIPFN WPG Y S I F++ I ++GY+SPIRTPRG DI+AACGQL Sbjct: 314 IKGIPAKINLIPFNEWPGAPYERSSNNRIRAFADIIYKAGYASPIRTPRGEDIMAACGQL 373 Query: 366 KSLSKRIPKVPRQEMQITG 384 KS ++R K Q TG Sbjct: 374 KSATERARKSRAQIAAETG 392 >gi|159045851|ref|YP_001534645.1| radical SAM enzyme [Dinoroseobacter shibae DFL 12] gi|157913611|gb|ABV95044.1| radical SAM enzyme [Dinoroseobacter shibae DFL 12] Length = 406 Score = 422 bits (1084), Expect = e-116, Method: Compositional matrix adjust. Identities = 211/379 (55%), Positives = 275/379 (72%), Gaps = 9/379 (2%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ R EL EAL G P++ V+MR +QIW+W+Y RG+RDF M+++++ R LL Sbjct: 35 KRNLVGLTRPELAEALAAAGTPEKQVKMRVNQIWQWLYERGVRDFNDMTNLAKPYRALLA 94 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F I PE+V +S DGTRK+L+R I G E+E VYIPE+ RGTLCVSSQVGC+ Sbjct: 95 DQFEIAVPEVVSRHVSEDGTRKYLVR-----IAGGHEVEVVYIPEEDRGTLCVSSQVGCT 149 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLTA EI+ Q+++AR LG++P + G + R +SNIV+M Sbjct: 150 LTCSFCHTGTQKLVRNLTAGEIVGQIMIARDDLGEWP----LPGRNPKNETRLLSNIVLM 205 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+ V+ ++ IA D G+S S+RRITLSTSG VP IAR EEIG MLA+S HA Sbjct: 206 GMGEPLYNFEAVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCMLAVSFHA 265 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++R+ LVPIN+++ + L+DA R YP SN+ RITFEYVMLKG+NDS DA L+++ Sbjct: 266 TTDEVRDKLVPINKRWNIATLLDALRDYPKASNSERITFEYVMLKGVNDSDEDARRLVEL 325 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +KGIPAKINLIPFN WPG Y S I F++ I ++GY+SPIRTPRG DI+AACGQL Sbjct: 326 IKGIPAKINLIPFNEWPGAPYERSSNNRIRAFADIIYKAGYASPIRTPRGEDIMAACGQL 385 Query: 366 KSLSKRIPKVPRQEMQITG 384 KS ++R K Q TG Sbjct: 386 KSATERARKSRAQIAAETG 404 >gi|260574031|ref|ZP_05842036.1| radical SAM enzyme, Cfr family [Rhodobacter sp. SW2] gi|259023497|gb|EEW26788.1| radical SAM enzyme, Cfr family [Rhodobacter sp. SW2] Length = 429 Score = 421 bits (1082), Expect = e-116, Method: Compositional matrix adjust. Identities = 200/369 (54%), Positives = 270/369 (73%), Gaps = 10/369 (2%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +++G+ R++L AL+ G P+R +MR Q+W+W+Y G RDF MS+++++ R L Sbjct: 23 KINIVGLTRDQLHAALVAAGTPERQAKMRVGQVWQWVYHWGKRDFALMSNLAKDYRAFLA 82 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +HF I P++V ++S DGTRK+L+R I G E+E VYIPE RGTLC+SSQVGC+ Sbjct: 83 EHFVIELPQVVTRQLSDDGTRKYLVR-----IAGGHEVEVVYIPEDGRGTLCISSQVGCT 137 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTC+FC+TGTQ LVRNLTA EI+ QV+LAR LG++P ++G R ISN+V+M Sbjct: 138 LTCTFCHTGTQVLVRNLTAAEIVGQVMLARDDLGEWP----VQGAPKDET-RLISNVVLM 192 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV+ ++ + D+ G++ +RRITLSTSG VP IAR EIG +LA+SLHA Sbjct: 193 GMGEPLYNFDNVRDAMKVVMDNEGIALGRRRITLSTSGVVPEIARTAREIGCLLAVSLHA 252 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++R+ LVPINRK+ + L+D R YPGL+N+ RITFEYVML+G+NDS DA L+++ Sbjct: 253 TTDEVRDKLVPINRKWNIAALMDELRAYPGLTNSERITFEYVMLQGVNDSKEDAYRLVEL 312 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +KGIPAKINLIPFN WPG Y S I F++ I +GY+SPIRTPRG DI+AACGQL Sbjct: 313 IKGIPAKINLIPFNEWPGAPYKRSSGNRIHAFADIIYNAGYASPIRTPRGEDIMAACGQL 372 Query: 366 KSLSKRIPK 374 KS ++R K Sbjct: 373 KSATERARK 381 >gi|254451490|ref|ZP_05064927.1| radical SAM enzyme, Cfr family [Octadecabacter antarcticus 238] gi|198265896|gb|EDY90166.1| radical SAM enzyme, Cfr family [Octadecabacter antarcticus 238] Length = 399 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 201/371 (54%), Positives = 272/371 (73%), Gaps = 8/371 (2%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +++G+ R++L +AL+ +G+ ++ +MR +Q+W+W+Y G+R+F M+++S++ R L +H Sbjct: 30 NIVGLTRDQLRDALIGVGVTEKQAKMRVNQVWQWLYHWGVREFDVMTNLSKDFRATLAEH 89 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F I PE+V + +S DGTRK+L+R I G E+E VYIPEK RGTLC+SSQVGC+LT Sbjct: 90 FKIELPEVVTKDVSTDGTRKYLVR-----IAGGHEVEVVYIPEKDRGTLCISSQVGCTLT 144 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 CSFC+TGTQKLVRNLTA EI+ QV+LAR L ++P G P R +SNIV+MGM Sbjct: 145 CSFCHTGTQKLVRNLTAGEIIGQVMLARDDLNEWPEPGQGTGDNGP---RLLSNIVLMGM 201 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL NF+NV+ ++ IA D G++ S+RRITLSTSG VP I R EIG MLAIS H + Sbjct: 202 GEPLYNFENVRDAMKIAMDGEGIALSRRRITLSTSGVVPEIHRTANEIGCMLAISFHGTT 261 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 +++R+ LVPIN+K+ LE L++A YP +SN+ RITFEYVMLK +NDS DA L+K+++ Sbjct: 262 DEIRDKLVPINKKWNLEKLLEALAAYPKVSNSERITFEYVMLKDVNDSDEDARRLVKLIE 321 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 GIPAKINLIPFN WPG Y SD I F++ I +GY+SPIR PRG DI+AACGQLKS Sbjct: 322 GIPAKINLIPFNEWPGAPYKRSDSDRIKAFADIIYNAGYASPIRRPRGEDIMAACGQLKS 381 Query: 368 LSKRIPKVPRQ 378 ++R K +Q Sbjct: 382 ATERARKSRKQ 392 >gi|197106949|ref|YP_002132326.1| predicted Fe-S-cluster redox enzyme [Phenylobacterium zucineum HLK1] gi|254807192|sp|B4RCA4|RLMN_PHEZH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|196480369|gb|ACG79897.1| predicted Fe-S-cluster redox enzyme [Phenylobacterium zucineum HLK1] Length = 385 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 202/382 (52%), Positives = 277/382 (72%), Gaps = 18/382 (4%) Query: 6 KESLIGMMREELEEALLKIGI--PQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + +L GM R EL L+++G+ P++ +MR SQ+W+W++ G+ DF+ M+D+++E R Sbjct: 19 RPNLSGMTRAELAACLVELGVVRPEK-AKMRASQLWRWMHHYGVTDFEKMTDVAKETRAA 77 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQV 122 L + +I P++V+ ++S DGTRKWL+R + +E+ETVYIP+ R G LCVSSQV Sbjct: 78 LAEVCAISRPQVVERQVSKDGTRKWLIR-----MAPGIEVETVYIPDVGRAGALCVSSQV 132 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L C+FC+TGTQ LVRNLTA EI+ QV +AR LG++P P R++SNI Sbjct: 133 GCTLNCTFCHTGTQALVRNLTAAEIVAQVQVARDDLGEWPS---------PKEDRRLSNI 183 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 V MGMGEPL N DNV ++ I +D+ G++ S+RRIT+STSG VP +A +GE MLAIS Sbjct: 184 VFMGMGEPLYNLDNVAAAIDIIADNEGIAISRRRITVSTSGVVPELAALGERTQAMLAIS 243 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +++LR LVP+NRKYP+ L+ A R YPGLSN++R+TFEYVMLKG+NDSP +A L Sbjct: 244 LHATNDELREKLVPLNRKYPIAELMAAIRAYPGLSNSKRVTFEYVMLKGVNDSPAEAKAL 303 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + +LKG+PAKINLIPFNPWPG +Y CSD I F+ + R+GY+SPIRTPRG DILAAC Sbjct: 304 VNLLKGVPAKINLIPFNPWPGSQYECSDWGTIERFAAVLNRAGYASPIRTPRGRDILAAC 363 Query: 363 GQLKSLSKRIPKVPRQEMQITG 384 GQLKS S+++ R+++ G Sbjct: 364 GQLKSESEKLRASARRKLAAGG 385 >gi|254418192|ref|ZP_05031916.1| radical SAM enzyme, Cfr family [Brevundimonas sp. BAL3] gi|196184369|gb|EDX79345.1| radical SAM enzyme, Cfr family [Brevundimonas sp. BAL3] Length = 390 Score = 418 bits (1075), Expect = e-115, Method: Compositional matrix adjust. Identities = 199/367 (54%), Positives = 267/367 (72%), Gaps = 16/367 (4%) Query: 8 SLIGMMREELEEALLKIGI-PQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L G+ R L +AL+ + P +MR SQ+W WI+ G+ +F MS+++++++ L + Sbjct: 21 NLSGLTRAGLRQALIDANVCPPEKAKMRASQVWSWIHHYGVTEFSAMSNVAKDMQAKLAE 80 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCS 125 HF++ PEIV+ ++S DGTRKWL+R +EIETVYIP+ R G LCVSSQVGC+ Sbjct: 81 HFTLARPEIVERQVSKDGTRKWLIR-----TAPGIEIETVYIPDVGRAGALCVSSQVGCT 135 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC+TGTQKLVRNLTA EI+ QV +AR L ++P P R++SNIV M Sbjct: 136 LNCTFCHTGTQKLVRNLTAAEIVAQVQVARDDLEEWPS---------PKEDRRLSNIVFM 186 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N D+V ++ I SD+ G++ S+RRIT+STSG P + +G MLAISLHA Sbjct: 187 GMGEPLYNLDHVADAIDIISDNEGIALSRRRITVSTSGVAPQLDALGTRTAAMLAISLHA 246 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ LR++LVP+N+KYPL+ L+ R YPGLSNARR+TFEYVMLKG+NDSP +A L+K+ Sbjct: 247 TNDALRDVLVPLNKKYPLDQLMAGIRAYPGLSNARRVTFEYVMLKGVNDSPEEARALLKL 306 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 ++GIPAKINLIPFNPWPG EY CSD K I F+ + ++GY+SPIRTPRG DILAACGQL Sbjct: 307 IEGIPAKINLIPFNPWPGVEYECSDWKTIERFAAILNKAGYASPIRTPRGRDILAACGQL 366 Query: 366 KSLSKRI 372 KS S+++ Sbjct: 367 KSESEKV 373 >gi|110677600|ref|YP_680607.1| hypothetical protein RD1_0192 [Roseobacter denitrificans OCh 114] gi|123066012|sp|Q16DM2|RLMN_ROSDO RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|109453716|gb|ABG29921.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114] Length = 394 Score = 418 bits (1074), Expect = e-115, Method: Compositional matrix adjust. Identities = 203/377 (53%), Positives = 270/377 (71%), Gaps = 10/377 (2%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L+G+ R + +AL+ G P++ +MR QIW+WIY G+RDF M+++S+ R L + Sbjct: 24 NLVGLTRAAMRDALIAEGTPEKQAKMRVGQIWQWIYQWGVRDFDLMTNLSKAYRAQLKEK 83 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F + PE+V ++S DGTRK+L+R I G E+E VYIP++ RGTLCVSSQVGC+LT Sbjct: 84 FVVEVPEVVTRQVSEDGTRKYLVR-----IAGGHEVEVVYIPDEGRGTLCVSSQVGCTLT 138 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 CSFC+TGTQKLVRNLTA EI+ QV++AR LG++P E R +SNIV+MGM Sbjct: 139 CSFCHTGTQKLVRNLTAAEIIGQVMVARDDLGEWP-----EIGAPKDETRLLSNIVLMGM 193 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL NF+NV+ ++ IA D G+ S+RRITLSTSG VP IAR EIG LA+S HA + Sbjct: 194 GEPLYNFENVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAVEIGCQLAVSFHATT 253 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 +D+R+ LVPIN+++ +E+L++A R YP +SN+ RITFEYVML G+NDS DA L+K++ Sbjct: 254 DDVRDTLVPINKRWNIEVLLEALRAYPKVSNSERITFEYVMLHGVNDSDEDARRLVKLID 313 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 GIPAKINLIPFN WPG Y S I F++ I ++GY+SPIRTPRG DI+AACGQLKS Sbjct: 314 GIPAKINLIPFNEWPGAPYKRSSNNRIRAFADIIYKAGYASPIRTPRGEDIMAACGQLKS 373 Query: 368 LSKRIPKVPRQEMQITG 384 ++R K +Q TG Sbjct: 374 ATERARKSRKQIAAETG 390 >gi|329848315|ref|ZP_08263343.1| radical SAM superfamily protein [Asticcacaulis biprosthecum C19] gi|328843378|gb|EGF92947.1| radical SAM superfamily protein [Asticcacaulis biprosthecum C19] Length = 405 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 208/377 (55%), Positives = 272/377 (72%), Gaps = 17/377 (4%) Query: 8 SLIGMMREELEEALLKIGI-PQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++ G+ R+ L ALL+ G+ +R +MR QIW+WI+ G+ DF M+DI+++ R L Sbjct: 19 NITGLTRDGLVRALLESGVVEERKAKMRMQQIWRWIHHYGVTDFDLMTDIAKDQRALFAD 78 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCS 125 F++ PEIV+ +IS DGTRK+L+R +G +E+E+V+IP R G LCVSSQVGC+ Sbjct: 79 RFTLARPEIVERQISRDGTRKYLIR-----MGPGIEVESVFIPSVGRAGALCVSSQVGCT 133 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC+TGTQKLVRNLTA EI+ QV +AR LG++P P R++SNIV M Sbjct: 134 LNCTFCHTGTQKLVRNLTAAEIVAQVQVARDDLGEWPS---------PKEDRQLSNIVFM 184 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N DNV ++ I SD+ G++ S+RRIT+STSG VP + +G MLAISLHA Sbjct: 185 GMGEPLYNLDNVADAIDIISDNEGIALSRRRITVSTSGVVPELEALGNRTAAMLAISLHA 244 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ LR+ +VP+N+KY +E L+ R YPGLSNARR+TFEYVMLKG+NDSP +A LIK+ Sbjct: 245 TNDTLRDEIVPLNKKYNIEALMAGIRAYPGLSNARRVTFEYVMLKGVNDSPAEARALIKL 304 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKGIPAKINLIPFNPWPG +Y CSD I TF+ + ++GY+SPIRTPRG DILAACGQL Sbjct: 305 LKGIPAKINLIPFNPWPGTDYQCSDWTAIETFAAILNKAGYASPIRTPRGRDILAACGQL 364 Query: 366 KSLS-KRIPKVPRQEMQ 381 KS S K+ V R+E Q Sbjct: 365 KSDSEKKRASVLRREAQ 381 >gi|83941897|ref|ZP_00954359.1| radical SAM enzyme, Cfr family protein [Sulfitobacter sp. EE-36] gi|83847717|gb|EAP85592.1| radical SAM enzyme, Cfr family protein [Sulfitobacter sp. EE-36] Length = 391 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 203/371 (54%), Positives = 268/371 (72%), Gaps = 10/371 (2%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L+G+ R+ + AL+ G P++ +MR QIW+WIY G RDF M+++S+ R L + Sbjct: 24 NLVGLTRDAMRAALIAEGTPEKQAKMRVGQIWQWIYQWGTRDFADMTNLSKAFRAELAEK 83 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F I PE+V +++S DGTRK+L+R I G E+E VYIPE+ RGTLCVSSQVGC+LT Sbjct: 84 FVIEVPEVVTKQVSEDGTRKYLVR-----IAGGHEVEVVYIPEEGRGTLCVSSQVGCTLT 138 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 CSFC+TGTQKLVRNLTA EI+ QV++AR LG++P + G + R +SNIV+MGM Sbjct: 139 CSFCHTGTQKLVRNLTAAEIIGQVMVARDDLGEWP----VPG-TLTDAPRLLSNIVLMGM 193 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL NF+NV+ ++ IA D G+ S+RRITLSTSG VP IAR EEIG LA+S HA + Sbjct: 194 GEPLYNFENVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAEEIGCQLAVSFHATT 253 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 +++RN LVPIN+++ + LI A R YP +SN+ RITFEYVML G+NDS DA LI++++ Sbjct: 254 DEVRNKLVPINKRWNIAELIKALRAYPKVSNSERITFEYVMLDGVNDSDADAHRLIELIR 313 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 GIPAKINLIPFN WPG Y S I FSE + ++GY+SP+R PRG DI+AACGQLKS Sbjct: 314 GIPAKINLIPFNEWPGAPYKRSSNNRIRAFSEIVYQAGYASPVRKPRGEDIMAACGQLKS 373 Query: 368 LSKRIPKVPRQ 378 ++R K +Q Sbjct: 374 ATERERKSRKQ 384 >gi|255261946|ref|ZP_05341288.1| radical SAM enzyme, Cfr family [Thalassiobium sp. R2A62] gi|255104281|gb|EET46955.1| radical SAM enzyme, Cfr family [Thalassiobium sp. R2A62] Length = 395 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 200/373 (53%), Positives = 273/373 (73%), Gaps = 14/373 (3%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L+G+ R+ + + L++ G P++ +MR QIW+WIYV+G+R F M+++S++ R L ++ Sbjct: 24 NLVGLRRDAMRDVLIEHGTPEKQAKMRVGQIWQWIYVKGLRSFDEMTNLSKDYRAKLAEN 83 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F I PE+V +++S DGTRK+L+R I G E+E VYIPE+ RGTLC+SSQVGC+LT Sbjct: 84 FVIEVPEVVTKQVSEDGTRKYLVR-----IAGGHEVEVVYIPEEGRGTLCISSQVGCTLT 138 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP--GCEDIEGMVIPSVGRKISNIVMM 185 CSFC+TGTQKLVRNLT EI+ QV++AR LG++P G + E R +SNIV+M Sbjct: 139 CSFCHTGTQKLVRNLTPAEIIGQVMVARDDLGEWPEPGTPNDEA-------RLLSNIVLM 191 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+ V+ ++ IA D G+S S+RRITLSTSG VP IA+ EEIG MLA+S HA Sbjct: 192 GMGEPLYNFEGVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIAKTAEEIGCMLAVSFHA 251 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++D+R+ LVPIN+++ + L+DA R YP +SN+ RITFEYVML G+ND+ DA L+++ Sbjct: 252 TTDDVRDKLVPINKRWNIAELLDALRAYPKVSNSERITFEYVMLDGVNDTDEDAHRLVEL 311 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +KGIPAKINLIPFN WPG Y S I F+ I ++GY+SPIR PRG DI+AACGQL Sbjct: 312 IKGIPAKINLIPFNEWPGAPYKRSSNNRIRAFAHIIYKAGYASPIRKPRGEDIMAACGQL 371 Query: 366 KSLSKRIPKVPRQ 378 KS ++R K +Q Sbjct: 372 KSATERARKSRKQ 384 >gi|83855374|ref|ZP_00948904.1| radical SAM enzyme, Cfr family protein [Sulfitobacter sp. NAS-14.1] gi|83843217|gb|EAP82384.1| radical SAM enzyme, Cfr family protein [Sulfitobacter sp. NAS-14.1] Length = 391 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 202/371 (54%), Positives = 269/371 (72%), Gaps = 10/371 (2%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L+G+ R+ + AL+ G P++ +MR QIW+WIY G RDF M+++S+ R L + Sbjct: 24 NLVGLTRDAMRAALIAEGTPEKQAKMRVGQIWQWIYQWGTRDFADMTNLSKAFRAELAEK 83 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F I PE+V +++S DGTRK+L+R I G E+E VYIPE+ RGTLCVSSQVGC+LT Sbjct: 84 FVIEVPEVVTKQVSEDGTRKYLVR-----IAGGHEVEVVYIPEEGRGTLCVSSQVGCTLT 138 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 CSFC+TGTQKLVRNLTA EI+ QV++AR LG++P + G + R +SNIV+MGM Sbjct: 139 CSFCHTGTQKLVRNLTAAEIIGQVMVARDDLGEWP----VPG-TLTDAPRLLSNIVLMGM 193 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL NF+NV+ ++ IA D G+ S+RRITLSTSG VP IAR EEIG LA+S HA + Sbjct: 194 GEPLYNFENVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAEEIGCQLAVSFHATT 253 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 +++R+ LVPIN+++ + LI+A R YP +SN+ RITFEYVML G+NDS DA LI++++ Sbjct: 254 DEVRDKLVPINKRWNIAELIEALRAYPKVSNSERITFEYVMLDGVNDSDADAHRLIELIR 313 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 GIPAKINLIPFN WPG Y S I FSE + ++GY+SP+R PRG DI+AACGQLKS Sbjct: 314 GIPAKINLIPFNEWPGAPYKRSSNNRIRAFSEIVYQAGYASPVRKPRGEDIMAACGQLKS 373 Query: 368 LSKRIPKVPRQ 378 ++R K +Q Sbjct: 374 ATERERKSRKQ 384 >gi|254486932|ref|ZP_05100137.1| radical SAM enzyme, Cfr family [Roseobacter sp. GAI101] gi|214043801|gb|EEB84439.1| radical SAM enzyme, Cfr family [Roseobacter sp. GAI101] Length = 391 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 203/371 (54%), Positives = 267/371 (71%), Gaps = 10/371 (2%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L+G+ R+ + E L+ G P++ +MR QIW+WIY G RDF M+++S+ R L + Sbjct: 24 NLVGLTRDAMREVLIAQGTPEKQAKMRVGQIWQWIYQWGTRDFAEMTNLSKAFRAELAEK 83 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F I PE+V +++S DGTRK+L+R I G E+E VYIPE RGTLCVSSQVGC+LT Sbjct: 84 FVIEVPEVVTKQVSEDGTRKYLVR-----IAGGHEVEVVYIPEDGRGTLCVSSQVGCTLT 138 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 CSFC+TGTQKLVRNLTA EI+ QV++AR L ++P + G I R +SNIV+MGM Sbjct: 139 CSFCHTGTQKLVRNLTAAEIIGQVMVARDDLDEWP----VPG-TITEAPRLLSNIVLMGM 193 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL NF+NV+ ++ IA D G+ S+RRITLSTSG VP IAR EEIG LA+S HA + Sbjct: 194 GEPLYNFENVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAEEIGCQLAVSFHATT 253 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 +++R+ LVPIN+++ + LI+A R YP +SN+ RITFEYVML G+NDS DA LI++++ Sbjct: 254 DEVRDKLVPINKRWNIAELIEALRSYPKVSNSERITFEYVMLNGVNDSDADAYRLIELIR 313 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 GIPAKINLIPFN WPG Y S I FSE I ++GY+SP+R PRG DI+AACGQLKS Sbjct: 314 GIPAKINLIPFNEWPGAPYTRSSNNRIRAFSEIIYKAGYASPVRKPRGEDIMAACGQLKS 373 Query: 368 LSKRIPKVPRQ 378 ++R K +Q Sbjct: 374 ATERARKSRKQ 384 >gi|83952609|ref|ZP_00961339.1| radical SAM enzyme, Cfr family protein [Roseovarius nubinhibens ISM] gi|83835744|gb|EAP75043.1| radical SAM enzyme, Cfr family protein [Roseovarius nubinhibens ISM] Length = 395 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 202/373 (54%), Positives = 269/373 (72%), Gaps = 12/373 (3%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L+G+ R+++ + L+ G P++ +MR SQIW+WIY G+RDF M+++++ R L + Sbjct: 24 NLVGLTRDKMRDVLIAHGTPEKQAKMRVSQIWQWIYQWGVRDFDAMTNLAKAYRAELAEK 83 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F I PE+V +++S DGTRK+L+R I G E+E VYIPE+ RGTLCVSSQVGC+LT Sbjct: 84 FVIEIPEVVSKQVSSDGTRKYLVR-----IAGGHEVEVVYIPEEDRGTLCVSSQVGCTLT 138 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 CSFC+TGTQKLVRNLTA EI+ QV++AR LG++P E R +SNIV+MGM Sbjct: 139 CSFCHTGTQKLVRNLTAGEIIGQVMMARDDLGEWP-----EQGAPKDETRLLSNIVLMGM 193 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL NFDNV+ ++ IA D+ G+ S+RRITLSTSG VP IAR +EIG LAIS HA + Sbjct: 194 GEPLYNFDNVRDAMKIAMDAEGIQLSRRRITLSTSGVVPEIARTAQEIGCQLAISFHATT 253 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 ++ RN LVPIN+++ +E L+ A YP +SN+ RITFEYVML G+ND+ DA LI+++K Sbjct: 254 DETRNKLVPINKRWNIEELLQALASYPKVSNSERITFEYVMLDGVNDTDDDARRLIQMIK 313 Query: 308 --GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 IPAKINLIPFN WPG Y S I F++ I ++GY+SPIRTPRG DI+AACGQL Sbjct: 314 DHAIPAKINLIPFNEWPGAPYKRSSNNRIRAFADIIYKAGYASPIRTPRGEDIMAACGQL 373 Query: 366 KSLSKRIPKVPRQ 378 KS ++R K R+ Sbjct: 374 KSATERARKSRRE 386 >gi|163733192|ref|ZP_02140636.1| hypothetical protein RLO149_11040 [Roseobacter litoralis Och 149] gi|161393727|gb|EDQ18052.1| hypothetical protein RLO149_11040 [Roseobacter litoralis Och 149] Length = 394 Score = 415 bits (1066), Expect = e-114, Method: Compositional matrix adjust. Identities = 202/371 (54%), Positives = 267/371 (71%), Gaps = 10/371 (2%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L+G+ R + + L+ G P++ +MR QIW+WIY G+RDF M+++S+ R L + Sbjct: 24 NLVGLTRAAMRDVLIAEGTPEKQAKMRVGQIWQWIYQWGVRDFDLMTNLSKAYRAELKEK 83 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F + PE+V ++S DGTRK+L+R I G E+E VYIPE RGTLCVSSQVGC+LT Sbjct: 84 FVVEVPEVVTRQVSEDGTRKYLVR-----IAGGHEVEVVYIPEDGRGTLCVSSQVGCTLT 138 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 CSFC+TGTQKLVRNLTA EI+ QV++AR LG++P E R +SNIV+MGM Sbjct: 139 CSFCHTGTQKLVRNLTAAEIIGQVIIARDDLGEWP-----EIGAPKDETRLLSNIVLMGM 193 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL NF+NV+ ++ IA D G+ S+RRITLSTSG VP IAR EIG LAIS HA + Sbjct: 194 GEPLYNFENVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAVEIGCQLAISFHATT 253 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 +D+R+ LVPIN+++ +E+L++A R YP +SN+ RITFEYVML G+NDS DA L+K+++ Sbjct: 254 DDVRDKLVPINKRWNIEVLLEALRVYPKVSNSERITFEYVMLHGVNDSDEDARRLVKLIE 313 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 GIPAKINLIPFN WPG Y S I F++ I ++GY+SPIRTPRG DI+AACGQLKS Sbjct: 314 GIPAKINLIPFNEWPGAPYKRSSNNRIRAFADIIYKAGYASPIRTPRGEDIMAACGQLKS 373 Query: 368 LSKRIPKVPRQ 378 ++R K +Q Sbjct: 374 ATERARKSRKQ 384 >gi|163793899|ref|ZP_02187873.1| radical SAM family enzyme [alpha proteobacterium BAL199] gi|159181010|gb|EDP65527.1| radical SAM family enzyme [alpha proteobacterium BAL199] Length = 389 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 202/369 (54%), Positives = 262/369 (71%), Gaps = 18/369 (4%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + L+G+ R+ L L IG+P RT QIW W+Y RG DFQ M+ +++ +R L Sbjct: 30 RPDLLGLERDALAAVLDGIGLPA----FRTGQIWHWLYHRGATDFQTMTTLAKPLRARLA 85 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + F I P +V + S DGT KWLLRF E E V+IPE+ RGTLCVSSQVGC+ Sbjct: 86 ETFRISRPSVVTRQDSIDGTIKWLLRF-----ADGNEAEAVFIPEEDRGTLCVSSQVGCT 140 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQ+LVRNLT+ EI+ QV++A LG +P R ++NIV+M Sbjct: 141 LTCSFCHTGTQRLVRNLTSAEIVGQVMVALDHLGAYP---------TGGPNRPLTNIVLM 191 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ I D G++ SKRRITLSTSG VP +A+ G ++GV LAISLHA Sbjct: 192 GMGEPLYNFDNVASAMRIIMDGEGVALSKRRITLSTSGVVPMMAQCGADLGVNLAISLHA 251 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ +R+ LVPINRK+P+ L+DACR YPGL+NARRITFEYVML G+ND+P DA L+ + Sbjct: 252 TTDTVRDDLVPINRKWPIAELLDACRRYPGLNNARRITFEYVMLAGVNDAPADARRLVAL 311 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 ++GIPAKINLIPFNPWPG +Y+CSD I F++ + +GY+SP+RTPRG DILAACGQL Sbjct: 312 IEGIPAKINLIPFNPWPGSKYVCSDPDTIERFAQIVLAAGYASPVRTPRGRDILAACGQL 371 Query: 366 KSLSKRIPK 374 KS S ++ + Sbjct: 372 KSESAKLTR 380 >gi|294084982|ref|YP_003551742.1| hypothetical protein SAR116_1415 [Candidatus Puniceispirillum marinum IMCC1322] gi|292664557|gb|ADE39658.1| hypothetical protein SAR116_1415 [Candidatus Puniceispirillum marinum IMCC1322] Length = 372 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 203/367 (55%), Positives = 262/367 (71%), Gaps = 18/367 (4%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L+G+ + LEE ++ G+P + R QIW+W++ G+ +F MSD+ + VR L Sbjct: 12 NLLGLSQTALEEQIIAAGLP----KFRAKQIWRWVWRHGLTNFDEMSDLGKPVREQLATM 67 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 + P + S DGT KWLLRFP E E VYIP+K+RGTLC+SSQVGC+LT Sbjct: 68 YKADRPAVSQRLNSKDGTIKWLLRFP-----DGNEAEAVYIPDKTRGTLCISSQVGCTLT 122 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 CSFC+TGTQKLVRNLT +EI QV+LA L D+P + GR+++NIV+MGM Sbjct: 123 CSFCHTGTQKLVRNLTVDEICGQVMLAMDELADWPAGRN---------GRRLTNIVLMGM 173 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL N++NV +++ I G++ SKRRITLSTSG VP I R GEE+GV LAISLHA Sbjct: 174 GEPLFNYENVAEAMRIIMSGEGVAVSKRRITLSTSGVVPEIKRAGEELGVNLAISLHATR 233 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 ++LR+ LVPINRKY L LI+ACR+YPGLSNARRIT+EYVML GINDS D L+ ++K Sbjct: 234 DELRDELVPINRKYKLAALIEACRNYPGLSNARRITWEYVMLDGINDSDEDCRQLLALIK 293 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 GIP+K+NLIPFNPWPG Y+CS I F++ + ++GY+SP+RTPRG DILAACGQLKS Sbjct: 294 GIPSKLNLIPFNPWPGSPYVCSKGDRIDAFAKRVLKAGYASPVRTPRGRDILAACGQLKS 353 Query: 368 LSKRIPK 374 S+RIP+ Sbjct: 354 ASQRIPR 360 >gi|83945705|ref|ZP_00958050.1| hypothetical protein OA2633_10954 [Oceanicaulis alexandrii HTCC2633] gi|83850906|gb|EAP88766.1| hypothetical protein OA2633_10954 [Oceanicaulis alexandrii HTCC2633] Length = 391 Score = 411 bits (1057), Expect = e-113, Method: Compositional matrix adjust. Identities = 196/367 (53%), Positives = 266/367 (72%), Gaps = 16/367 (4%) Query: 8 SLIGMMREELEEALLKIG-IPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+GM R +L +AL++ G + ++ +MR Q+W+WIY G+ +F M+++S+++R L Sbjct: 19 ALVGMTRPQLRDALVEHGLVDEKKAKMRAEQLWRWIYHYGVTEFDQMTNVSKDLRQQLEA 78 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCS 125 F++ PEI + ++S DGTRK+L+R + VE+ETV+IP +R G LCVSSQVGC+ Sbjct: 79 KFTLARPEITERQVSVDGTRKYLIR-----MASGVEVETVFIPAVARSGALCVSSQVGCT 133 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC+TGTQ LVRNLTA EI+ QV++AR LG++P + R+I+NIV M Sbjct: 134 LNCTFCHTGTQPLVRNLTAAEIVAQVMIARDDLGEWPTSNE---------DRQITNIVFM 184 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N D+V S+ + SD G+ +RR T+STSG VP I +GE MLAISLHA Sbjct: 185 GMGEPLYNLDHVSDSIDVISDHEGIGIGRRRTTVSTSGVVPKIPELGERTRSMLAISLHA 244 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +++LRN LVP+N+KYP+ L+DA R YP LSN++R+TFEYVMLKG+NDS +A L+K+ Sbjct: 245 TNDELRNELVPLNKKYPIAELMDAIRAYPDLSNSKRVTFEYVMLKGVNDSLAEARALVKL 304 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKGIPAKINLIPFNPWPG Y CSD I F++ + R+GY+SPIRTPRG DI AACGQL Sbjct: 305 LKGIPAKINLIPFNPWPGSPYECSDWDQIEAFADVVNRAGYASPIRTPRGRDIFAACGQL 364 Query: 366 KSLSKRI 372 KS S++I Sbjct: 365 KSESQKI 371 >gi|163745013|ref|ZP_02152373.1| hypothetical protein OIHEL45_05480 [Oceanibulbus indolifex HEL-45] gi|161381831|gb|EDQ06240.1| hypothetical protein OIHEL45_05480 [Oceanibulbus indolifex HEL-45] Length = 393 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 198/371 (53%), Positives = 264/371 (71%), Gaps = 10/371 (2%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L+G+ R+ + + L+ G P++ +MR QIW+WIY G+RDF M+++++ R L + Sbjct: 24 NLVGLTRDAMRDVLIANGTPEKQAKMRVGQIWQWIYQWGVRDFDSMTNLAKGYRAELAEK 83 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F I PE+V + S DGTRK+L+R I G E+E VYIPE+ RGTLCVSSQVGC+LT Sbjct: 84 FVIEVPEVVTRQESEDGTRKYLVR-----IAGGHEVEVVYIPEEGRGTLCVSSQVGCTLT 138 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 CSFC+TGTQKLVRNLTA EI+ QV++AR L ++P E R +SNIV+MGM Sbjct: 139 CSFCHTGTQKLVRNLTAAEIIGQVMVARDDLDEWP-----ETGTRTEEARLLSNIVLMGM 193 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL NF+NV+ ++ IA D G+ S+RRITLSTSG VP I R EIG LA+S HA + Sbjct: 194 GEPLYNFENVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIHRTAAEIGCQLAVSFHATT 253 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 +++RN LVPIN+++ +E L+DA R YP +SN+ RITFEYVMLKG+NDS DA L++++K Sbjct: 254 DEVRNKLVPINKRWNIEELLDALRAYPKVSNSERITFEYVMLKGVNDSDEDAHRLVELIK 313 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 GIPAKINLIPFN WPG Y S I F++ + +GY+SP+R PRG DI+AACGQLKS Sbjct: 314 GIPAKINLIPFNEWPGSPYERSSNNRIRAFADIVYNAGYASPVRKPRGEDIMAACGQLKS 373 Query: 368 LSKRIPKVPRQ 378 ++R K +Q Sbjct: 374 ATERARKSRKQ 384 >gi|260432258|ref|ZP_05786229.1| radical SAM enzyme, Cfr family [Silicibacter lacuscaerulensis ITI-1157] gi|260416086|gb|EEX09345.1| radical SAM enzyme, Cfr family [Silicibacter lacuscaerulensis ITI-1157] Length = 395 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 205/377 (54%), Positives = 267/377 (70%), Gaps = 16/377 (4%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ R+ L E L++ G P++ +MR +QIW+WIY G+RDF M+++++ R L Sbjct: 22 KINLVGLTRDRLREVLIEHGTPEKQAKMRVNQIWQWIYQWGVRDFDQMTNLAKAYRAQLA 81 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +HF I PE+V +IS DGTRK+L+R I G E+E VYIPE+ RGTLC+SSQVGC+ Sbjct: 82 EHFVIEIPEVVTRQISSDGTRKYLVR-----IAGGHEVEVVYIPEEDRGTLCISSQVGCT 136 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP--GCEDIEGMVIPSVGRKISNIV 183 LTCSFC+TGTQKLVRNLTA EI+ QV++AR L ++P G E R +SNIV Sbjct: 137 LTCSFCHTGTQKLVRNLTAAEIIGQVMMARDDLDEWPTPGAPKNET-------RLLSNIV 189 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 +MGMGEPL NF+NV+ ++ IA D G+S S+RRITLSTSG VP IAR EEIG +LAIS Sbjct: 190 LMGMGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCLLAISF 249 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA ++++R++LVPIN+++ +E L+ A YP SN+ RITFEYVML G+NDS DA LI Sbjct: 250 HATTDEVRDVLVPINKRWNIEELLQALASYPNASNSERITFEYVMLDGVNDSDEDAHRLI 309 Query: 304 KILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +K IPAKINLIPFN WPG Y S I F+ I ++GY+SPIR RG DI+AA Sbjct: 310 DHIKRHNIPAKINLIPFNEWPGAPYKRSSNNRIRAFANIIYQAGYASPIRKTRGEDIMAA 369 Query: 362 CGQLKSLSKRIPKVPRQ 378 CGQLKS ++R K RQ Sbjct: 370 CGQLKSATERARKSRRQ 386 >gi|167644157|ref|YP_001681820.1| radical SAM protein [Caulobacter sp. K31] gi|205829696|sp|B0T387|RLMN_CAUSK RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|167346587|gb|ABZ69322.1| radical SAM enzyme, Cfr family [Caulobacter sp. K31] Length = 404 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 197/367 (53%), Positives = 267/367 (72%), Gaps = 16/367 (4%) Query: 8 SLIGMMREELEEALLKIGIPQR-HVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L G+ R +L AL + G+ + +MR +QI++W++ RG+ DF M+D+++E R L + Sbjct: 27 NLSGLTRAQLLVALTESGVAEHGKAKMRATQIFRWMHHRGVTDFALMTDVAKETRARLAE 86 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCS 125 F++ PE+V+ ++S DGTRKWL+R + +E+ETVYIP R G LCVSSQVGC+ Sbjct: 87 RFTVSRPEVVERQVSKDGTRKWLIR-----MAPGIEVETVYIPSVGRAGALCVSSQVGCT 141 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC+TGTQ LVRNLTA EI+ QV +A+ L ++P ++ R +SNIV M Sbjct: 142 LNCSFCHTGTQALVRNLTAAEIVAQVQIAKDDLAEWPSDKE---------DRLLSNIVFM 192 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +V ++ I SD+ G+ S+RRIT+STSG VP + +G++ MLAISLHA Sbjct: 193 GMGEPLYNLGHVADAIEIISDNEGIGISRRRITVSTSGVVPQLEALGDKTQAMLAISLHA 252 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ LR++LVP+N+KYPLE L+ R YPGLSNARR+TFEYVMLKG+NDSP +A L+K+ Sbjct: 253 TNDALRDVLVPLNKKYPLEDLMAGVRAYPGLSNARRVTFEYVMLKGVNDSPDEARALVKL 312 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +KGIPAKINLIPFNPWPG +Y+CSD I F + ++GYSSPIRTPRG DILAACGQL Sbjct: 313 IKGIPAKINLIPFNPWPGTDYVCSDWAAIEAFGAILNKAGYSSPIRTPRGRDILAACGQL 372 Query: 366 KSLSKRI 372 KS S+++ Sbjct: 373 KSESEKV 379 >gi|16124389|ref|NP_418953.1| hypothetical protein CC_0134 [Caulobacter crescentus CB15] gi|221233072|ref|YP_002515508.1| radical SAM family enzyme [Caulobacter crescentus NA1000] gi|81621310|sp|Q9ABT6|RLMN_CAUCR RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807161|sp|B8GXM4|RLMN_CAUCN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|13421243|gb|AAK22121.1| conserved hypothetical protein [Caulobacter crescentus CB15] gi|220962244|gb|ACL93600.1| radical SAM family enzyme [Caulobacter crescentus NA1000] Length = 404 Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust. Identities = 197/367 (53%), Positives = 267/367 (72%), Gaps = 16/367 (4%) Query: 8 SLIGMMREELEEALLKIGIPQR-HVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L G+ R +L AL++ G+ + +MR +QI++W++ RG+ DF MSD+++E R L + Sbjct: 26 NLSGLTRPQLVAALVESGVVEHGKAKMRATQIFRWMHHRGVTDFADMSDVAKETRARLAE 85 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCS 125 F+I PEIV+ ++S DGTRKWL+R + +E+E+VYIP R G LCVSSQVGC+ Sbjct: 86 AFTIARPEIVERQVSKDGTRKWLIR-----MAPGIEVESVYIPGVGRAGALCVSSQVGCT 140 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC+TGTQ LVRNLTA EI+ QV +A+ L ++P ++ R++SNIV M Sbjct: 141 LNCSFCHTGTQPLVRNLTAAEIVAQVQVAKDDLAEWPSDKE---------DRQLSNIVFM 191 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N V ++ I SD+ G++ S+RRIT+STSG VP + ++G MLAISLHA Sbjct: 192 GMGEPLYNLGQVADAIEIISDNEGIAISRRRITVSTSGVVPMLEKLGSTTQAMLAISLHA 251 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ LR++LVP+N+KYP+ L+ R YPGLSNARR+TFEYVMLKG+NDSP +A L+K+ Sbjct: 252 TNDPLRDVLVPLNKKYPIAELMAGIRAYPGLSNARRVTFEYVMLKGVNDSPEEARALVKL 311 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +KGIPAKINLIPFNPWPG +Y CSD I F+ + ++GYSSPIRTPRG DILAACGQL Sbjct: 312 IKGIPAKINLIPFNPWPGSDYQCSDWATIEAFAAILNKAGYSSPIRTPRGRDILAACGQL 371 Query: 366 KSLSKRI 372 KS S+++ Sbjct: 372 KSESEKV 378 >gi|254462169|ref|ZP_05075585.1| radical SAM enzyme, Cfr family [Rhodobacterales bacterium HTCC2083] gi|206678758|gb|EDZ43245.1| radical SAM enzyme, Cfr family [Rhodobacteraceae bacterium HTCC2083] Length = 391 Score = 408 bits (1049), Expect = e-112, Method: Compositional matrix adjust. Identities = 200/371 (53%), Positives = 267/371 (71%), Gaps = 10/371 (2%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L+G+ R+ + +AL++ G P++ +MR QIW+WIY G RDF M+++S+ R L + Sbjct: 24 NLVGLTRDGMRDALIENGTPEKQAKMRVGQIWQWIYQWGKRDFDEMTNLSKTYRAELGEK 83 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F I PE+V ++S DGTRK+L++ I G E+E VYIPE RGTLCVSSQVGC+LT Sbjct: 84 FVIEVPEVVTRQVSEDGTRKYLVK-----IAGGHEVEVVYIPEDGRGTLCVSSQVGCTLT 138 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 CSFC+TGTQKLVRNLTA EI+ QV++AR L ++P E R +SNIV+MGM Sbjct: 139 CSFCHTGTQKLVRNLTAGEIIGQVMIARDDLNEWP-----EQGAPKDEIRLLSNIVLMGM 193 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL NF+NV+ ++ IA D+ G+ S+RRITLSTSG VP IAR EEIG LAIS HA + Sbjct: 194 GEPLYNFENVRDAMKIAMDAEGIQLSRRRITLSTSGVVPEIARTAEEIGCQLAISFHATT 253 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 +++R+ LVPIN+++ + L++A R YP +SN+ RITFEYVML G+ND+ DA LIK+++ Sbjct: 254 DEVRDKLVPINKRWNIAELVEALRAYPRVSNSERITFEYVMLDGVNDTDADAHRLIKLIE 313 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 GIPAKINLIPFN WPG Y S I F++ I ++GY+SPIR PRG DI+AACGQLKS Sbjct: 314 GIPAKINLIPFNEWPGAPYKRSSGNRIHRFADIIYKAGYASPIRKPRGEDIMAACGQLKS 373 Query: 368 LSKRIPKVPRQ 378 ++R K +Q Sbjct: 374 ATERARKSRKQ 384 >gi|148555870|ref|YP_001263452.1| radical SAM protein [Sphingomonas wittichii RW1] gi|205829890|sp|A5VAJ8|RLMN_SPHWW RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|148501060|gb|ABQ69314.1| radical SAM enzyme, Cfr family [Sphingomonas wittichii RW1] Length = 402 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 196/366 (53%), Positives = 261/366 (71%), Gaps = 16/366 (4%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 L+G+ R++L AL + R ++R Q+W WIY RG DF M+DI++++R L+Q Sbjct: 33 DLLGLSRDDLRMALETAQLEPRQAKLRAKQLWHWIYNRGATDFAVMTDIAKDMRGWLDQR 92 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F + PE+V+ ++S DGTRKWLLR + E V+IP+ RGTLCVSSQVGC+L Sbjct: 93 FVVSRPEVVEAQVSTDGTRKWLLRS-----DDGQDYEMVFIPDADRGTLCVSSQVGCTLN 147 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC+TGT KLVRNLT EI+ QV+LAR LG++P + GR ++NIVMMGM Sbjct: 148 CRFCHTGTMKLVRNLTPAEIVGQVMLARDALGEWPSQPE---------GRMLTNIVMMGM 198 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL NFDNV+ +L + D GL+ SKRRITLST+G VP +AR GEEIGV LA+SLHA++ Sbjct: 199 GEPLYNFDNVRDALKLVMDGDGLALSKRRITLSTAGVVPMMARAGEEIGVNLAVSLHAIT 258 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 ++R+ +VP+NRKY +E L+ AC YPG +NARRITFEYVMLK ND DAL L+++++ Sbjct: 259 KEVRDEIVPLNRKYGIEDLLQACADYPGANNARRITFEYVMLKDKNDRDEDALELVRLIR 318 Query: 308 G--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +PAK+NLIPFNPWPG Y CSD + FS+ I ++G S+P+RTPRG DI+AACGQL Sbjct: 319 KYRLPAKVNLIPFNPWPGAPYECSDPDRVARFSDLIFKAGISAPVRTPRGRDIMAACGQL 378 Query: 366 KSLSKR 371 KS +++ Sbjct: 379 KSAAEK 384 >gi|254512050|ref|ZP_05124117.1| radical SAM enzyme, Cfr family [Rhodobacteraceae bacterium KLH11] gi|221535761|gb|EEE38749.1| radical SAM enzyme, Cfr family [Rhodobacteraceae bacterium KLH11] Length = 397 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 205/377 (54%), Positives = 266/377 (70%), Gaps = 16/377 (4%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ R+ L AL++ G P++ +MRT QIW+WIY G+RDF M+++++ R L Sbjct: 22 KVNLVGLTRDALRAALIEHGTPEKQAKMRTGQIWQWIYQWGVRDFAEMTNLAKAYRAQLA 81 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +HF I PE+V ++S DGTRK+L R I G E+E VYIPE RGTLC+SSQVGC+ Sbjct: 82 EHFVIEIPEVVTRQVSEDGTRKYLCR-----IAGGHEVEVVYIPEDDRGTLCISSQVGCT 136 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP--GCEDIEGMVIPSVGRKISNIV 183 LTCSFC+TGTQKLVRNLTA EI+ QV++AR L ++P G E R +SNIV Sbjct: 137 LTCSFCHTGTQKLVRNLTAAEIVGQVMMARDDLEEWPTPGAPKDET-------RLLSNIV 189 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 +MGMGEPL NFDNV+ ++ IA D G+S S+RRITLSTSG VP IAR EEIG +LAIS Sbjct: 190 LMGMGEPLYNFDNVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCLLAISF 249 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++ R++LVPIN+++ +E L+ A YP +SN+ RITFEYVML G+NDS DA LI Sbjct: 250 HATTDETRDMLVPINKRWNIEELLQALASYPKVSNSERITFEYVMLDGVNDSDADAHRLI 309 Query: 304 KILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 + +K IPAKINLIPFN WPG Y S I F+ I ++GY+SPIR RG DI+AA Sbjct: 310 EHIKRHNIPAKINLIPFNEWPGAPYKRSSNNRIRAFANIIYQAGYASPIRKTRGEDIMAA 369 Query: 362 CGQLKSLSKRIPKVPRQ 378 CGQLKS ++R K +Q Sbjct: 370 CGQLKSATERARKSRKQ 386 >gi|302381137|ref|YP_003816960.1| radical SAM protein [Brevundimonas subvibrioides ATCC 15264] gi|302191765|gb|ADK99336.1| radical SAM enzyme, Cfr family [Brevundimonas subvibrioides ATCC 15264] Length = 385 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 196/367 (53%), Positives = 265/367 (72%), Gaps = 16/367 (4%) Query: 8 SLIGMMREELEEALLKIGI-PQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L G+ R L +AL+ I P +MR SQ+W WI+ G+ DF M++++++ + + Sbjct: 20 NLSGLTRAGLRQALIDADICPPEKAKMRASQVWGWIHHFGVTDFDAMTNMAKDAKAKMAA 79 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCS 125 F++ PEIV+ ++S DGTRKWL+R +EIETVYIP+ R G LCVSSQVGC+ Sbjct: 80 AFTLARPEIVERQVSADGTRKWLIR-----TAPGIEIETVYIPDVGRAGALCVSSQVGCT 134 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC+TGTQ LVRNLTA EI+ QV +AR L ++P P R++SNIV M Sbjct: 135 LNCTFCHTGTQALVRNLTAAEIVAQVQVARDDLNEWPS---------PKEDRRLSNIVFM 185 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N D+V ++ I SD+ G++ S+RRIT+STSG VP + +G MLAISLHA Sbjct: 186 GMGEPLYNLDHVSDAIDIISDNEGIALSRRRITVSTSGVVPQLEPLGTRTQAMLAISLHA 245 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ LR++LVP+N+KYPL+ L+D R YPG+SNARR+TFEYVMLKG+NDSP +A L+K+ Sbjct: 246 TNDALRDVLVPLNKKYPLQQLMDGIRAYPGISNARRVTFEYVMLKGVNDSPDEARALVKL 305 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 ++GIPAK+NLIPFNPWPG +Y CSD K I F+ + ++GY+SPIRTPRG DILAACGQL Sbjct: 306 IEGIPAKVNLIPFNPWPGTDYECSDWKTIERFAAILNKAGYASPIRTPRGRDILAACGQL 365 Query: 366 KSLSKRI 372 KS S+++ Sbjct: 366 KSESEKV 372 >gi|295691362|ref|YP_003595055.1| radical SAM enzyme, Cfr family [Caulobacter segnis ATCC 21756] gi|295433265|gb|ADG12437.1| radical SAM enzyme, Cfr family [Caulobacter segnis ATCC 21756] Length = 403 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 196/367 (53%), Positives = 266/367 (72%), Gaps = 16/367 (4%) Query: 8 SLIGMMREELEEALLKIGIPQR-HVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L G+ R +L AL++ G+ + +MR +QI++W++ RG+ DF MSD+++E R L + Sbjct: 26 NLSGLTRPQLIAALVESGVVEHGKAKMRATQIFRWMHHRGVTDFASMSDVAKETRARLAE 85 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCS 125 F+I PEIV+ ++S DGTRKWL+R + +E+E+V+IP R G LCVSSQVGC+ Sbjct: 86 AFTIARPEIVERQVSQDGTRKWLIR-----MAPGIEVESVFIPGVGRAGALCVSSQVGCT 140 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC+TGTQ LVRNLTA EI+ QV +A+ LG++P ++ R++SNIV M Sbjct: 141 LNCSFCHTGTQPLVRNLTAAEIVAQVQVAKDDLGEWPSDKE---------DRQLSNIVFM 191 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N V ++ I SD+ G+ S+RRIT+STSG VP + ++G MLAISLHA Sbjct: 192 GMGEPLYNLGQVADAIEIISDNEGIGISRRRITVSTSGVVPMLEKLGSTTQAMLAISLHA 251 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ LR++LVP+N+KYP+ L+ R YPGLSNARR+TFEYVMLKG+NDSP +A L+ + Sbjct: 252 TNDALRDVLVPLNKKYPIAELMAGIRAYPGLSNARRVTFEYVMLKGVNDSPPEARALVNL 311 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +KGIPAKINLIPFNPWPG +Y CSD I F+ + ++GYSSPIRTPRG DILAACGQL Sbjct: 312 IKGIPAKINLIPFNPWPGSDYQCSDWATIEAFAAILNKAGYSSPIRTPRGRDILAACGQL 371 Query: 366 KSLSKRI 372 KS S+++ Sbjct: 372 KSESEKV 378 >gi|56698170|ref|YP_168542.1| radical SAM protein [Ruegeria pomeroyi DSS-3] gi|81348990|sp|Q5LN66|RLMN_SILPO RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|56679907|gb|AAV96573.1| radical SAM enzyme, Cfr family [Ruegeria pomeroyi DSS-3] Length = 393 Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust. Identities = 200/381 (52%), Positives = 268/381 (70%), Gaps = 16/381 (4%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L+G+ R+ + E L+ G P++ +MR QIW+WIY G+RDF+ M+++++ R L +H Sbjct: 24 NLVGLTRDRMREVLIDHGTPEKQAKMRVGQIWQWIYQWGVRDFEAMTNLAKAYRAQLAEH 83 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F+I PE++ +S DGTRK+L+R I G E+E VYIPE+ RGTLC+SSQVGC+LT Sbjct: 84 FTIEIPEVITRLVSEDGTRKYLVR-----IAGGHEVEVVYIPEEDRGTLCISSQVGCTLT 138 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP--GCEDIEGMVIPSVGRKISNIVMM 185 CSFC+TGTQKLVRNLTA EI+ QV++AR LG++P G E R +SNIV+M Sbjct: 139 CSFCHTGTQKLVRNLTAAEIVGQVMMARDDLGEWPVPGAPKDET-------RLLSNIVLM 191 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV+ ++ IA D G+ S+RRITLSTSG VP IAR EEIG +LAIS HA Sbjct: 192 GMGEPLYNFDNVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAEEIGCLLAISFHA 251 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++R++LVPIN+++ +E L+ A YP +SN+ RITFEYVML G+NDS DA L+ Sbjct: 252 TTDEVRDVLVPINKRWNIEELLSALAAYPKVSNSERITFEYVMLDGVNDSDADAHRLLDH 311 Query: 306 LK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++ IPAKINLIPFN WPG Y S I F+ I ++GY++PIR RG DI+AACG Sbjct: 312 IRRYKIPAKINLIPFNEWPGAPYKRSSNNRIRAFANIIYQAGYAAPIRKTRGDDIMAACG 371 Query: 364 QLKSLSKRIPKVPRQEMQITG 384 QLKS ++R K +Q TG Sbjct: 372 QLKSATERARKSKKQIEAETG 392 >gi|126738619|ref|ZP_01754324.1| radical SAM enzyme, Cfr family protein [Roseobacter sp. SK209-2-6] gi|126720418|gb|EBA17124.1| radical SAM enzyme, Cfr family protein [Roseobacter sp. SK209-2-6] Length = 396 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 199/379 (52%), Positives = 267/379 (70%), Gaps = 20/379 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ R+++ E L++ G P++ +MR QIW+WIY G RDF M+++++ R L+ Sbjct: 23 KINLVGLTRDKMREVLIEHGTPEKQAKMRVGQIWQWIYQWGKRDFADMTNLAKAYRAQLD 82 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +HF I PE+V +++S DGTRK+L+R I G E+E VYIPE+ RGTLC+SSQVGC+ Sbjct: 83 EHFEIRIPEVVSKQVSTDGTRKYLVR-----IAGGHEVEVVYIPEEDRGTLCISSQVGCT 137 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV----GRKISN 181 LTCSFC+TGTQKLVRNLT E++ QV++AR L ++P IP R +SN Sbjct: 138 LTCSFCHTGTQKLVRNLTPGEVIGQVMMARDDLEEWP---------IPGAPKDETRLLSN 188 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 IV+MGMGEPL NF+NV+ ++ IA D G+ S+RRITLSTSG VP IAR +EIG +LAI Sbjct: 189 IVLMGMGEPLYNFENVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAQEIGCLLAI 248 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 S HA +ND+R++LVPIN+++ ++ L+ A YP SN+ RITFEYVMLK +NDS DA Sbjct: 249 SFHATTNDVRDVLVPINKRWNIDALLQALADYPKASNSERITFEYVMLKDVNDSDEDAHR 308 Query: 302 LIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 LI+ +K IPAKINLIPFN WPG Y S I F+ I ++GY+SPIR RG DI+ Sbjct: 309 LIEHIKRYNIPAKINLIPFNEWPGSPYQRSSNNRIRAFANIIYQAGYASPIRKTRGDDIM 368 Query: 360 AACGQLKSLSKRIPKVPRQ 378 AACGQLKS ++R K +Q Sbjct: 369 AACGQLKSATERARKSRKQ 387 >gi|99082854|ref|YP_615008.1| hypothetical protein TM1040_3014 [Ruegeria sp. TM1040] gi|122984035|sp|Q1GC70|RLMN_SILST RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|99039134|gb|ABF65746.1| hypothetical protein TM1040_3014 [Ruegeria sp. TM1040] Length = 397 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 200/377 (53%), Positives = 264/377 (70%), Gaps = 16/377 (4%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ R+ + L++ G P++ +MR QIW+WIY G+RDF M+++++ R L Sbjct: 23 KINLVGLTRDRMRAVLIENGTPEKQAKMRVGQIWQWIYQWGVRDFAEMTNLAKAYRAQLE 82 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + F I PE+V +++S DGTRK+L+R I G E+E VYIPE RGTLC+SSQVGC+ Sbjct: 83 ETFEIRIPEVVSKQVSTDGTRKYLVR-----INGGHEVEVVYIPEDDRGTLCISSQVGCT 137 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP--GCEDIEGMVIPSVGRKISNIV 183 LTCSFC+TGTQKLVRNLT EI+ QV++AR L ++P G E R +SNIV Sbjct: 138 LTCSFCHTGTQKLVRNLTPAEIIGQVMMARDDLEEWPTPGAPKDET-------RLLSNIV 190 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 +MGMGEPL NFDNV+ ++ IA D G+S S+RRITLSTSG VP IAR EEIG +LAIS Sbjct: 191 LMGMGEPLYNFDNVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCLLAISF 250 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +N++R++LVPINR++ ++ L+ A YP +SN+ RITFEYVML G+NDS DA L+ Sbjct: 251 HATTNEVRDVLVPINRRWNIDELLQALADYPKVSNSERITFEYVMLDGVNDSDEDAHRLL 310 Query: 304 KILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +K IPAKINLIPFN WPG Y S I F+ I ++GY+SPIR RG DI+AA Sbjct: 311 DHIKRHNIPAKINLIPFNEWPGAPYKRSSNNRIRAFANIIYQAGYASPIRKTRGDDIMAA 370 Query: 362 CGQLKSLSKRIPKVPRQ 378 CGQLKS ++R K +Q Sbjct: 371 CGQLKSATERARKSRKQ 387 >gi|332187261|ref|ZP_08389000.1| radical SAM superfamily protein [Sphingomonas sp. S17] gi|332012682|gb|EGI54748.1| radical SAM superfamily protein [Sphingomonas sp. S17] Length = 394 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 198/366 (54%), Positives = 259/366 (70%), Gaps = 16/366 (4%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 LIG+ +++L EALL G+ + ++R+ QIW W+Y RG F M+DI++ L + Sbjct: 25 DLIGLTKDQLREALLSAGMELKQAKLRSKQIWHWLYNRGAVRFADMTDIAKAQHPWLEER 84 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F I PE+V+ ++S DGTRKWLLR P + E V+IP+ RGTLCVSSQVGC+L Sbjct: 85 FVIGRPEVVEAQVSSDGTRKWLLRSP-----DGQDYEMVFIPDADRGTLCVSSQVGCTLN 139 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC+TGT +LVRNLTA EI+ QV+LAR LG++P + GR ++NIVMMGM Sbjct: 140 CRFCHTGTMRLVRNLTAGEIVGQVMLARDSLGEWPSQPE---------GRMLTNIVMMGM 190 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL NFD V+ +L + D GL+ SKRRITLSTSG VP +AR GEEIGV LA+SLHAV+ Sbjct: 191 GEPLYNFDAVRDALKLVMDGDGLALSKRRITLSTSGVVPMMARAGEEIGVNLAVSLHAVT 250 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 D+R+ +VP+N+KY +E L+ AC YPG +NARRITFEYVMLK NDS DA L+++L+ Sbjct: 251 KDVRDEIVPLNKKYGIEELLQACADYPGANNARRITFEYVMLKDKNDSDADAHELVRLLR 310 Query: 308 --GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +PAK+NLIPFNPWPG Y CSD + I FS+ + G S+P+RTPRG DI AACGQL Sbjct: 311 HYKLPAKVNLIPFNPWPGAAYECSDPERIRRFSDIVFEGGISAPVRTPRGRDIDAACGQL 370 Query: 366 KSLSKR 371 K+ +++ Sbjct: 371 KTAAEK 376 >gi|114568582|ref|YP_755262.1| radical SAM protein [Maricaulis maris MCS10] gi|122317061|sp|Q0ATR3|RLMN_MARMM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|114339044|gb|ABI64324.1| 23S rRNA m(2)A-2503 methyltransferase [Maricaulis maris MCS10] Length = 396 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 191/366 (52%), Positives = 261/366 (71%), Gaps = 15/366 (4%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 SL GM REEL + G+ ++ +MR Q+W+WIY G+ F M++IS+++R ++ Sbjct: 27 SLAGMTREELRLVAIDCGVEEKKAKMRAEQLWRWIYHYGVTSFDEMTNISKDLRAVIADK 86 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCSL 126 +++ P+++D ++S DGTRK+L+ + VE ETV+IP+ +R G LCVSSQVGC+L Sbjct: 87 YALHRPKLIDRQVSVDGTRKYLIE-----LAPGVECETVFIPDVARSGALCVSSQVGCTL 141 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC+TGTQ LVRNLTA EI+ QV++AR L ++P + RKI+NIV MG Sbjct: 142 NCTFCHTGTQALVRNLTAAEIVAQVMIARDDLDEWPTSNE---------NRKITNIVFMG 192 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N D+V S+ I SD G++ S+RR T+STSG VP I +G G MLAISLHA Sbjct: 193 MGEPLYNLDHVATSIDIISDGEGIAISRRRTTVSTSGVVPKIEELGARTGTMLAISLHAT 252 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ LR+ LVP+N+KYPL L++A R YPGL N++R+TFEYVMLKG+NDS +A L+K+L Sbjct: 253 NDTLRDELVPLNKKYPLVELMNAIRAYPGLGNSKRVTFEYVMLKGVNDSLAEAKALVKLL 312 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 KGIPAKINLIPFNPWP Y CSD I F++ + ++GY+SPIRTPRG DI AACGQL+ Sbjct: 313 KGIPAKINLIPFNPWPKSPYECSDWDQIEAFADVVNKAGYASPIRTPRGRDIFAACGQLR 372 Query: 367 SLSKRI 372 S S+++ Sbjct: 373 SESQKV 378 >gi|114797352|ref|YP_762004.1| radical SAM protein [Hyphomonas neptunium ATCC 15444] gi|122942041|sp|Q0BWY9|RLMN_HYPNA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|114737526|gb|ABI75651.1| radical SAM enzyme, Cfr family [Hyphomonas neptunium ATCC 15444] Length = 387 Score = 401 bits (1030), Expect = e-110, Method: Compositional matrix adjust. Identities = 194/368 (52%), Positives = 260/368 (70%), Gaps = 15/368 (4%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ L G+ L+ + +G+ + MR QI +WI+ G DF M+DI++++R L Sbjct: 17 KKRLTGLSVPALKAEMEALGLEPKAANMRARQIRRWIHHFGTTDFAAMTDIAKDLRAQLA 76 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGC 124 + F + PEI D ++S DGT+KWL R+ G +E E+VYIP+ + G LCVSSQVGC Sbjct: 77 EKFEVERPEIADHQVSRDGTQKWLTRY-----GPGIEGESVYIPDVGKAGALCVSSQVGC 131 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC+TGTQ LVRNLTA EI+ QV++AR L ++P IE R+++NIV Sbjct: 132 TLNCTFCHTGTQALVRNLTAAEIVQQVIIARDALSEWPSS--IEE-------RRLTNIVF 182 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N DNV +++ SD G++ +RRIT+ST+G P I +GE G MLAISLH Sbjct: 183 MGMGEPLYNLDNVAEAIDTISDGDGMAIGRRRITVSTAGVAPKIPELGERTGAMLAISLH 242 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +NDLRN LVP+NRKY ++ L DA R YPGL NA+R+TFEYVMLKGIND+ +A +L+K Sbjct: 243 ATNNDLRNELVPLNRKYDIQTLFDAIRAYPGLGNAKRVTFEYVMLKGINDTLAEARDLVK 302 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 ++KG+P+KINLIPFNPWPG Y CSD + I F+E + R+GY+SPIRTPRG DILAACGQ Sbjct: 303 LMKGVPSKINLIPFNPWPGSPYECSDWETIEEFAEVLNRAGYASPIRTPRGRDILAACGQ 362 Query: 365 LKSLSKRI 372 L+S S ++ Sbjct: 363 LRSESVKV 370 >gi|259417568|ref|ZP_05741487.1| radical SAM enzyme, Cfr family [Silicibacter sp. TrichCH4B] gi|259346474|gb|EEW58288.1| radical SAM enzyme, Cfr family [Silicibacter sp. TrichCH4B] Length = 397 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 198/377 (52%), Positives = 267/377 (70%), Gaps = 16/377 (4%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ R+ + E L++ G P++ +MR QIW+WIY G+R+F M+++++ R L Sbjct: 23 KINLVGLTRDRMREVLMEHGTPEKQAKMRVGQIWQWIYQWGVRNFSEMTNLAKAYRAQLE 82 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + F I PE+V +++S DGTRK+L+R I G E+E VYIPE RGTLC+SSQVGC+ Sbjct: 83 ETFEIRIPEVVSKQVSTDGTRKYLVR-----INGGHEVEVVYIPEDDRGTLCISSQVGCT 137 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP--GCEDIEGMVIPSVGRKISNIV 183 LTCSFC+TGTQKLVRNLT EI+ QV++AR L ++P G E R +SNIV Sbjct: 138 LTCSFCHTGTQKLVRNLTPAEIIGQVMMARDDLEEWPTPGAPKDET-------RLLSNIV 190 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 +MGMGEPL NF+NV+ ++ IA D G+S S+RRITLSTSG VP IAR EEIG +LAIS Sbjct: 191 LMGMGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCLLAISF 250 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +N++R++LVPINR++ ++ L+ + +YP +SN+ RITFEYVML G+NDS DA L+ Sbjct: 251 HATTNEVRDVLVPINRRWNIDELLQSLANYPKVSNSERITFEYVMLDGVNDSDEDAHRLL 310 Query: 304 KILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 + +K IPAKINLIPFN WPG Y S I F+ I ++GY+SPIR RG DI+AA Sbjct: 311 EHIKRYDIPAKINLIPFNEWPGAPYKRSSNNRIRAFANIIYQAGYASPIRKTRGDDIMAA 370 Query: 362 CGQLKSLSKRIPKVPRQ 378 CGQLKS ++R K +Q Sbjct: 371 CGQLKSATERARKSRKQ 387 >gi|254477449|ref|ZP_05090835.1| radical SAM enzyme, Cfr family [Ruegeria sp. R11] gi|214031692|gb|EEB72527.1| radical SAM enzyme, Cfr family [Ruegeria sp. R11] Length = 396 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 200/377 (53%), Positives = 265/377 (70%), Gaps = 16/377 (4%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ RE++ + L++ G P++ +MR QIW+WIY G RDF+ M+++++ R L Sbjct: 23 KINLVGLTREQMRDVLIENGTPEKQAKMRVGQIWQWIYQWGKRDFEEMTNLAKGYRAQLA 82 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + F I PE+V +++S DGTRK+L+R I G E+E VYIPE RGTLCVSSQVGC+ Sbjct: 83 ETFEISVPEVVSKQVSTDGTRKYLVR-----IAGGHEVEVVYIPEDDRGTLCVSSQVGCT 137 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP--GCEDIEGMVIPSVGRKISNIV 183 LTCSFC+TGTQKLVRNLT EI+ QV++AR L ++P G E R +SNIV Sbjct: 138 LTCSFCHTGTQKLVRNLTPGEIIGQVMMARDDLEEWPTPGAPKDET-------RLLSNIV 190 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 +MGMGEPL NF+NV+ ++ IA D G+S S+RRITLSTSG VP IAR +EIG +LAIS Sbjct: 191 LMGMGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAQEIGCLLAISF 250 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +N++R++LVPIN+++ ++ L+ A YP SN+ RITFEYVML G+NDS DA LI Sbjct: 251 HATTNEVRDVLVPINKRWNIDELLQALADYPKASNSERITFEYVMLDGVNDSDEDAHRLI 310 Query: 304 KILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +K IPAKINLIPFN WPG Y S I F+ I ++GY+SPIR RG DI+AA Sbjct: 311 DHIKRYKIPAKINLIPFNEWPGSPYKRSSNNRIRAFANIIYQAGYASPIRKTRGDDIMAA 370 Query: 362 CGQLKSLSKRIPKVPRQ 378 CGQLKS ++R K +Q Sbjct: 371 CGQLKSATERARKSRKQ 387 >gi|254292458|ref|YP_003058481.1| radical SAM enzyme, Cfr family [Hirschia baltica ATCC 49814] gi|254040989|gb|ACT57784.1| radical SAM enzyme, Cfr family [Hirschia baltica ATCC 49814] Length = 390 Score = 398 bits (1022), Expect = e-109, Method: Compositional matrix adjust. Identities = 193/363 (53%), Positives = 262/363 (72%), Gaps = 15/363 (4%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L G+ +L E + +IGI ++ +MR +Q+ W++ G+ DF M++I++++R L ++ Sbjct: 21 NLSGLSLVKLRERMEEIGIDKKKAKMRANQVSHWMHNFGVTDFDDMTNIAKDMRAKLVEN 80 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCSL 126 I P+I + K+S DGT+KWL RF G +E E+V+IP+ +R G LCVSSQVGC+L Sbjct: 81 HIIARPDITEHKVSVDGTQKWLSRF-----GPGIEAESVFIPDVARSGALCVSSQVGCTL 135 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 +C+FC+TGTQK+VRNLTA+EI+ QVL+AR LG++P PS RK++NIV MG Sbjct: 136 SCTFCHTGTQKMVRNLTAQEIVAQVLVARDTLGEWP---------TPSENRKLTNIVFMG 186 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N DNV +++ SD G+S +RRIT+ST+G P I +G MLAISLHA Sbjct: 187 MGEPLYNLDNVVEAIDTISDCEGISIGRRRITVSTAGVAPKIPELGARTNAMLAISLHAT 246 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++DLR+ +VPIN+KY LE L DA R YP L N++R+TFEYVMLK +NDS +A++LIK+L Sbjct: 247 NDDLRDEIVPINKKYNLECLFDAIRSYPDLGNSKRVTFEYVMLKDVNDSLAEAVDLIKLL 306 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 KG+PAKINLIPFNPWPG Y CSD I TF+E + R+G S+PIRTPRG DI AACGQL+ Sbjct: 307 KGLPAKINLIPFNPWPGSPYECSDWDKIETFAEVLNRAGLSAPIRTPRGRDIFAACGQLR 366 Query: 367 SLS 369 S S Sbjct: 367 SES 369 >gi|144899244|emb|CAM76108.1| conserved hypothetical protein [Magnetospirillum gryphiswaldense MSR-1] Length = 380 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 201/369 (54%), Positives = 257/369 (69%), Gaps = 19/369 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +LIG+ R++L + IG R Q+W W+Y RG DF M+ IS+ ++ L Sbjct: 6 QKTNLIGLSRDQLTAEMASIG----EKPFRAKQLWHWLYNRGETDFLKMTSISKVMQERL 61 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS--RGTLCVSSQV 122 + + + P + E S D TRKWLL+F E ETVYIP++ RG +C+SSQV Sbjct: 62 AERYVVRRPLVERELTSVDTTRKWLLKF-----DDGNEAETVYIPDEDEQRGAVCISSQV 116 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+LTC FC+TGTQ LVRNLTA EI+ Q +LAR G++P +D R +SNI Sbjct: 117 GCTLTCKFCHTGTQLLVRNLTAAEIVGQFMLARDSYGEWPTPDD--------TTRLLSNI 168 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL NFDNV +L I D G+ S+RRITLSTSG VP + R G E+GV LAIS Sbjct: 169 VMMGMGEPLYNFDNVATALKIIMDGEGIGISRRRITLSTSGVVPMMGRAGAELGVNLAIS 228 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHAV++++RN ++PIN+KYPL+ L+ ACR YPG SNARRITFEYVMLKGINDS DA L Sbjct: 229 LHAVTDEVRNQIMPINKKYPLKELMQACRDYPGASNARRITFEYVMLKGINDSLADAREL 288 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++++KG+PAK NLIPFNPWPG +Y CS +DI FS+ I+ +GYS+PIR RG DILAAC Sbjct: 289 LRLVKGLPAKFNLIPFNPWPGSDYECSSMRDIRAFSDLIQDNGYSAPIRKSRGADILAAC 348 Query: 363 GQLKSLSKR 371 GQL+S S+R Sbjct: 349 GQLRSESQR 357 >gi|296534699|ref|ZP_06897089.1| cfr family radical SAM enzyme [Roseomonas cervicalis ATCC 49957] gi|296264972|gb|EFH11207.1| cfr family radical SAM enzyme [Roseomonas cervicalis ATCC 49957] Length = 409 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 195/368 (52%), Positives = 254/368 (69%), Gaps = 18/368 (4%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + L+G+ REEL ++ IG R Q+W WIY +G+ DF MS I++ ++ L Sbjct: 41 RRDLVGLSREELVAEMVAIG----EKPFRAKQLWHWIYHQGVTDFSQMSTIAKAMQGKLA 96 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP--EKSRGTLCVSSQVG 123 + F + P + E+ S DGTRKWL F ++ETVYIP E+ RG +CVS+QVG Sbjct: 97 ERFVVGRPGVTTEQTSTDGTRKWLFGF-----RDGQQVETVYIPDPEEDRGAVCVSTQVG 151 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L+C FC+TGTQKLVRNL A EI+ Q + AR G++P D R +S IV Sbjct: 152 CTLSCKFCHTGTQKLVRNLGAAEIVGQFMAARDSYGEWPSPTD-------GTPRLLSTIV 204 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 +MGMGEPL N++NV K++ I D G++ S+RRITLSTSG VP + R G E+GV LA+SL Sbjct: 205 IMGMGEPLYNYENVAKAMRIIMDGEGIALSRRRITLSTSGVVPMMDRCGAELGVGLAVSL 264 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HAV ND+R+ +VP+NRKYP+E L+ ACR YPG SNARRITFEYVMLKG+NDS DA L+ Sbjct: 265 HAVRNDIRDEIVPLNRKYPIEELMAACRRYPGASNARRITFEYVMLKGVNDSEADARELV 324 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++L+GIPAK+NLIPFNPWPG Y S I F+ ++ +GY+SPIRTPRG DILAACG Sbjct: 325 RLLQGIPAKVNLIPFNPWPGSPYETSSNNAIHRFARIVQEAGYASPIRTPRGRDILAACG 384 Query: 364 QLKSLSKR 371 QLK+ S+R Sbjct: 385 QLKTESER 392 >gi|297183711|gb|ADI19836.1| predicted Fe-S cluster redox enzyme [uncultured alpha proteobacterium EB000_37G09] Length = 388 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 191/369 (51%), Positives = 260/369 (70%), Gaps = 18/369 (4%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 L + SL+ + LE ++ +G+P + R Q+W W++ G+ DF M+D+ + ++ L Sbjct: 22 LLRRSLLSFEPDALEAEMIALGLP----KFRARQLWGWVWRHGVTDFSDMTDLGKPLQAL 77 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L++ F + P + + S DGT KWL++ + E ETVYIP+ RGTLC+SSQ+G Sbjct: 78 LSERFHVDRPAVSRRQDSSDGTIKWLIK-----LSDGQEAETVYIPDDGRGTLCISSQIG 132 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+LTCSFC+TGTQ+LVRNL+ +EI Q+LLA LGD+P GR+++NIV Sbjct: 133 CTLTCSFCHTGTQRLVRNLSVDEICGQILLAMDELGDWPATRP---------GRRLTNIV 183 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 +MGMGEPL N+D V ++ I + G+ SKRRITLSTSG VP I R G ++GV LAISL Sbjct: 184 LMGMGEPLYNYDYVASAMRIIMSNEGVGVSKRRITLSTSGIVPEITRCGNDLGVNLAISL 243 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HAV ++LRN LVPINRKY L+ LID R YPGLSNARR+T+EYVM+ G+NDS DA L+ Sbjct: 244 HAVRDELRNTLVPINRKYNLKTLIDTVRAYPGLSNARRVTWEYVMIDGVNDSEADARALV 303 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +++ GIP+KINLIPFNPWPG +Y CS+ + I F++ + ++GY+SP+RTPRG DILAACG Sbjct: 304 RLISGIPSKINLIPFNPWPGTDYKCSNDETIDKFAKIVMKAGYASPVRTPRGRDILAACG 363 Query: 364 QLKSLSKRI 372 QLKS S R+ Sbjct: 364 QLKSDSVRL 372 >gi|87199457|ref|YP_496714.1| hypothetical protein Saro_1436 [Novosphingobium aromaticivorans DSM 12444] gi|123749853|sp|Q2G8E3|RLMN_NOVAD RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|87135138|gb|ABD25880.1| 23S rRNA m(2)A-2503 methyltransferase [Novosphingobium aromaticivorans DSM 12444] Length = 429 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 197/380 (51%), Positives = 260/380 (68%), Gaps = 21/380 (5%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 LIG+ R+++ E + G+ + ++R Q++ W+Y RG+ DF M+DI++ +R L + Sbjct: 37 DLIGLPRKQIAELFAQAGLDAKAAKLRAKQVFHWLYHRGVTDFDAMTDIAKTMRPWLAER 96 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F I PEIV+ ++S DGTRKWLLR + + E V+IP+ RGTLCVSSQVGC+L Sbjct: 97 FVIGRPEIVEAQVSTDGTRKWLLRTADKH-----DFEMVFIPDADRGTLCVSSQVGCTLN 151 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP--------------GCEDIEGMVIP 173 C FC+TGT +LVRNLT EI+ QV+LAR LG++P +D + Sbjct: 152 CRFCHTGTMRLVRNLTPGEIVGQVMLARDALGEWPKGANDSRVATMAGLDFDDEDEGSYT 211 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233 S GR ++NIVMMGMGEPL NFDNV+ +L + D GL+ SKRRITLSTSG VP + R GE Sbjct: 212 SDGRLLTNIVMMGMGEPLYNFDNVRDALKLVMDGDGLALSKRRITLSTSGVVPMMERCGE 271 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 EIGV LA+SLHAV+ D+R+ +VPINRKY +E L+ AC YPG SNARRITFEYVMLK N Sbjct: 272 EIGVNLAVSLHAVTKDVRDEIVPINRKYGIEELLQACADYPGASNARRITFEYVMLKDKN 331 Query: 294 DSPRDALNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351 DS A L+++++ +PAK+NLIPFNPWPG Y CS I +F+ + +G S+P+R Sbjct: 332 DSDDHARELVRLIRQYKLPAKVNLIPFNPWPGAPYECSSPDRIKSFANIVFEAGISAPVR 391 Query: 352 TPRGLDILAACGQLKSLSKR 371 TPRG DI AACGQLK+ S+R Sbjct: 392 TPRGRDIDAACGQLKTASER 411 >gi|218461404|ref|ZP_03501495.1| hypothetical protein RetlK5_18727 [Rhizobium etli Kim 5] Length = 278 Score = 395 bits (1015), Expect = e-108, Method: Compositional matrix adjust. Identities = 192/263 (73%), Positives = 221/263 (84%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 TLC+SSQVGC+LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR LGDFP E +G ++P+ Sbjct: 1 TLCISSQVGCTLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPA 60 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234 GRK+SNIVMMGMGEPL NFD VK++L IA+D GLS SKRR+TLSTSG VP I R GEE Sbjct: 61 EGRKVSNIVMMGMGEPLYNFDAVKQALLIATDGDGLSLSKRRVTLSTSGVVPEIFRTGEE 120 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 IGVMLAISLHAV +DLR+ILVPIN+KYPL+ LIDAC+ YPGLSNARRITFEYVMLK +ND Sbjct: 121 IGVMLAISLHAVRDDLRDILVPINKKYPLKELIDACKAYPGLSNARRITFEYVMLKDVND 180 Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 S DA LIK+LKG+PAKINLIPFNPWPG Y CSD + I F++ I +GY+SPIRTPR Sbjct: 181 SLEDARGLIKLLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPR 240 Query: 355 GLDILAACGQLKSLSKRIPKVPR 377 G DILAACGQLKS S+R+ K R Sbjct: 241 GRDILAACGQLKSESERMRKTER 263 >gi|103486196|ref|YP_615757.1| hypothetical protein Sala_0703 [Sphingopyxis alaskensis RB2256] gi|122985201|sp|Q1GV98|RLMN_SPHAL RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|98976273|gb|ABF52424.1| conserved hypothetical protein [Sphingopyxis alaskensis RB2256] Length = 420 Score = 395 bits (1014), Expect = e-108, Method: Compositional matrix adjust. Identities = 201/385 (52%), Positives = 257/385 (66%), Gaps = 27/385 (7%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 L+G+ R+ + L++ G+ + ++R QIW WIY RG+ DF GM+DI++ +R L Sbjct: 24 DLVGLSRDAIGGVLVEAGLDAKAAKLRAKQIWHWIYHRGVTDFMGMTDIAKAMRPWLTDR 83 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F I P + + ++S DGTRKWLL E E V+IP+ RGTLCVSSQVGC+L Sbjct: 84 FIIGRPTVREAQVSSDGTRKWLL-----AAADGQEYEMVFIPDADRGTLCVSSQVGCTLN 138 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV------------ 175 C FC+TGT +LVRNL A EI+ QVLLAR LG++P ++ G S Sbjct: 139 CRFCHTGTMRLVRNLGAGEIVGQVLLARDALGEWPKG-NMAGFGAGSDADPEDDDADDDA 197 Query: 176 -------GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228 GR ++NIVMMGMGEPL NFD VK +L I D GL+ SKRRITLSTSG VP + Sbjct: 198 VGHYTADGRMLTNIVMMGMGEPLYNFDEVKAALKIVMDGDGLALSKRRITLSTSGVVPMM 257 Query: 229 ARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVM 288 AR GEEIGV LA+SLHAVS ++R+ +VP+NRKY +E L+ AC YPG +NARRITFEYVM Sbjct: 258 ARAGEEIGVNLAVSLHAVSKEIRDEIVPLNRKYGIEELLQACADYPGANNARRITFEYVM 317 Query: 289 LKGINDSPRDALNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGY 346 LK ND DA L++++K +PAK+NLIPFNPWPG Y CS + + FS I ++G Sbjct: 318 LKDKNDRDEDARELVRLIKQYKLPAKVNLIPFNPWPGAPYECSTPERVRAFSNLIFKAGI 377 Query: 347 SSPIRTPRGLDILAACGQLKSLSKR 371 S+PIRTPRG DI+AACGQLKS + R Sbjct: 378 SAPIRTPRGRDIMAACGQLKSAATR 402 >gi|85708979|ref|ZP_01040045.1| predicted Fe-S-cluster redox enzyme [Erythrobacter sp. NAP1] gi|85690513|gb|EAQ30516.1| predicted Fe-S-cluster redox enzyme [Erythrobacter sp. NAP1] Length = 416 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 195/372 (52%), Positives = 261/372 (70%), Gaps = 13/372 (3%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 LIG+ R + E + G+ +R ++R Q++ W+Y RG+ DF+ M+DIS+ +R L + Sbjct: 31 DLIGLPRPRIRELFAEAGLDERQAKLRAKQVFHWLYHRGVTDFEAMTDISKTMRPWLAER 90 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F I P IV+ + S DGTRKWLL+ + E V+IP+ RGTLCVSSQVGC+L Sbjct: 91 FVIGRPNIVEAQHSSDGTRKWLLQ-----TDDGHDFEMVFIPDADRGTLCVSSQVGCTLN 145 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP-----GCEDIEGM-VIPSVGRKISN 181 C+FC+TGT +LVRNLT EI+ QV+LAR LG++P G ++ E + + GR ++N Sbjct: 146 CTFCHTGTMRLVRNLTPGEIVGQVMLARDALGEWPKGVMDGLDEAEDVGHYTADGRLLTN 205 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 IVMMGMGEPL NFD+V+ +L++ D GL+ SKRRITLSTSG VP + R GEEIGV LA+ Sbjct: 206 IVMMGMGEPLYNFDHVRDALNLVMDGDGLALSKRRITLSTSGVVPAMERCGEEIGVNLAV 265 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHAV+ D+R+ +VP+N+KY +E L+ AC YPG SNARRITFEYVMLK NDS DA Sbjct: 266 SLHAVTKDVRDEIVPLNKKYGIEELLQACADYPGASNARRITFEYVMLKDKNDSDEDARE 325 Query: 302 LIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L+++L+ +PAK+NLIPFNPWPG Y CS + I FS + G S+P+RTPRG DI Sbjct: 326 LVRLLRKFDLPAKVNLIPFNPWPGANYECSTPERIKAFSNIVFEGGISAPVRTPRGRDID 385 Query: 360 AACGQLKSLSKR 371 AACGQLK+ +++ Sbjct: 386 AACGQLKTAAQK 397 >gi|307295042|ref|ZP_07574884.1| radical SAM enzyme, Cfr family [Sphingobium chlorophenolicum L-1] gi|306879516|gb|EFN10734.1| radical SAM enzyme, Cfr family [Sphingobium chlorophenolicum L-1] Length = 419 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 192/374 (51%), Positives = 262/374 (70%), Gaps = 15/374 (4%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 L+G+ R +++ AL + G+ + ++R+ Q++ W+Y RG DF M+D+++ +R + + Sbjct: 33 DLMGLSRPQIKSALEEAGLDVKQAKLRSKQLFHWLYHRGETDFDAMTDLAKPMRGWMAER 92 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F + PE+V+ ++S DGTRKWLLR + E V+IP+ RGTLCVSSQVGC+L Sbjct: 93 FVVGRPEVVEAQVSSDGTRKWLLRS-----DDGQDYEMVFIPDADRGTLCVSSQVGCTLN 147 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP--------GCEDIEGMVIPSVGRKI 179 C FC+TGT +LVRNLT EI+ QV+LAR LG++P E + GR + Sbjct: 148 CRFCHTGTMRLVRNLTPGEIVGQVMLARDALGEWPKGSMASVNDDEADDASQYSPDGRML 207 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 +NIVMMGMGEPL NFD+V+ +L + D GL+ SKRRITLSTSG VP +AR GEEIGV L Sbjct: 208 TNIVMMGMGEPLYNFDHVRDALKVVMDGDGLALSKRRITLSTSGVVPMMARAGEEIGVNL 267 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHAV+ D+R+ LVP+NRKY +E L+ AC YPG +NARRITFEYVM++ NDS DA Sbjct: 268 AVSLHAVTKDVRDELVPLNRKYGIEDLLQACADYPGANNARRITFEYVMIRDKNDSDDDA 327 Query: 300 LNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 L+++L+ +PAK+NLIPFNPWPG +Y CS + I FS+ + G S+P+RTPRG D Sbjct: 328 RELVRLLRQYKLPAKVNLIPFNPWPGTDYECSTPERIRRFSDIVFEGGISAPVRTPRGRD 387 Query: 358 ILAACGQLKSLSKR 371 I+AACGQLKS S++ Sbjct: 388 IMAACGQLKSASEK 401 >gi|326387224|ref|ZP_08208834.1| hypothetical protein Y88_1274 [Novosphingobium nitrogenifigens DSM 19370] gi|326208405|gb|EGD59212.1| hypothetical protein Y88_1274 [Novosphingobium nitrogenifigens DSM 19370] Length = 421 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 199/379 (52%), Positives = 258/379 (68%), Gaps = 20/379 (5%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 L+G+ R+ + E G+ R ++R Q++ WIY RG+ DF M+DI++ +R L++ Sbjct: 30 DLVGLPRKAITELFATAGLDARAAKLRAKQVFHWIYHRGVTDFDAMTDIAKTMRPWLSER 89 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F I P IV + S DGTRKWLLR + E V+IP+ RGTLCVSSQVGC+L Sbjct: 90 FVIDRPSIVTAQASSDGTRKWLLR-----TADNHDFEMVFIPDADRGTLCVSSQVGCTLN 144 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC------------EDIEG-MVIPS 174 C FC+TGT +LVRNLT EI+ QV+LAR LG++P +D EG + Sbjct: 145 CRFCHTGTMRLVRNLTPGEIVGQVMLARDALGEWPKGGGTMAGLDEDPEDDPEGAQAYTA 204 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234 GR ++NIVMMGMGEPL NFDNV+ +L I D GL+ SKRRITLSTSG VP + R G+E Sbjct: 205 DGRLLTNIVMMGMGEPLYNFDNVRDALKIVMDGDGLALSKRRITLSTSGVVPMMDRCGDE 264 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 IGV LA+SLHAV+ ++R+ +VPINRKY LE L+ AC YPG SNARRITFEYVMLK ND Sbjct: 265 IGVNLAVSLHAVTKEVRDEIVPINRKYGLEELLSACAAYPGASNARRITFEYVMLKDKND 324 Query: 295 SPRDALNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 S DA L+++++ +PAK+NLIPFNPWPG Y CS + I FS+ + +G S+P+RT Sbjct: 325 SDEDARELVRLIRKYKLPAKVNLIPFNPWPGAPYECSTPERIKRFSDIVFEAGISAPVRT 384 Query: 353 PRGLDILAACGQLKSLSKR 371 PRG DI AACGQLK+ ++R Sbjct: 385 PRGRDIDAACGQLKTAAER 403 >gi|94495790|ref|ZP_01302369.1| hypothetical protein SKA58_14447 [Sphingomonas sp. SKA58] gi|94424482|gb|EAT09504.1| hypothetical protein SKA58_14447 [Sphingomonas sp. SKA58] Length = 420 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 193/379 (50%), Positives = 264/379 (69%), Gaps = 16/379 (4%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 L+G+ R +++ + G+ + ++R+ QI+ W+Y RG DF M+D+++ +R + + Sbjct: 33 DLMGLSRAQIKSVFEEAGLDAKAAKLRSKQIFHWLYHRGETDFDAMTDLAKPMRGWMAER 92 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F + P++V+ ++S DGTRKWLLR + E V+IP+ RGTLCVSSQVGC+L Sbjct: 93 FVVGRPQVVEAQVSSDGTRKWLLRS-----DDGQDYEMVFIPDADRGTLCVSSQVGCTLN 147 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP------GCEDIEG---MVIPSVGRK 178 CSFC+TGT +LVRNLT EI+ QV+LAR LG++P +D EG S GR Sbjct: 148 CSFCHTGTMRLVRNLTPGEIVGQVMLARDALGEWPKGSMASANDDDEGDEASHYTSDGRM 207 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238 ++NIVMMGMGEPL NFD+V+ +L + D GL+ SKRRITLSTSG +P +AR GEEIGV Sbjct: 208 LTNIVMMGMGEPLYNFDHVRDALKVVMDGDGLALSKRRITLSTSGVIPMMARAGEEIGVN 267 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLH V+ D+R+ LVP+NRK+ +E L+ AC YPG +NARRITFEYVM+K NDS D Sbjct: 268 LAVSLHGVTKDVRDELVPLNRKFGIEELLAACAAYPGANNARRITFEYVMIKDKNDSDAD 327 Query: 299 ALNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 A L+++L+ +PAK+NLIPFNPWPG +Y CS + I FS+ + G S+P+RTPRG Sbjct: 328 ARELVRLLRHYKLPAKVNLIPFNPWPGTDYECSTPERIRRFSDIVFEGGISAPVRTPRGR 387 Query: 357 DILAACGQLKSLSKRIPKV 375 DI+AACGQLKS S++ K Sbjct: 388 DIMAACGQLKSASEKKSKA 406 >gi|294010894|ref|YP_003544354.1| hypothetical protein SJA_C1-09080 [Sphingobium japonicum UT26S] gi|292674224|dbj|BAI95742.1| conserved hypothetical protein [Sphingobium japonicum UT26S] Length = 419 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 192/374 (51%), Positives = 262/374 (70%), Gaps = 15/374 (4%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 L+G+ R ++ AL + G+ + ++R+ Q++ W+Y RG DF M+D+++ +R + + Sbjct: 33 DLMGLSRPQIRGALEEAGLDVKQAKLRSKQLFHWLYHRGETDFDAMTDLAKPMRGWMAER 92 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F + PE+V+ ++S DGTRKWLLR + E V+IP+ RGTLCVSSQVGC+L Sbjct: 93 FVVGRPEVVEAQVSSDGTRKWLLRS-----DDGQDYEMVFIPDADRGTLCVSSQVGCTLN 147 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP--------GCEDIEGMVIPSVGRKI 179 C FC+TGT +LVRNLT EI+ QV+LAR LG++P E + + GR + Sbjct: 148 CRFCHTGTMRLVRNLTPGEIVGQVMLARDALGEWPKGSMASANDDEADDASQYSTDGRML 207 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 +NIVMMGMGEPL NFD+V+ +L + D GL+ SKRRITLSTSG VP +AR GEEIGV L Sbjct: 208 TNIVMMGMGEPLYNFDHVRDALKVVMDGDGLALSKRRITLSTSGVVPMMARAGEEIGVNL 267 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHAV+ D+R+ LVP+N+KY +E L+ AC YPG +NARRITFEYVM+K NDS DA Sbjct: 268 AVSLHAVTKDVRDELVPLNKKYGIEDLLQACADYPGANNARRITFEYVMIKDKNDSDADA 327 Query: 300 LNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 L+++L+ +PAK+NLIPFNPWPG +Y CS + I FS+ + G S+P+RTPRG D Sbjct: 328 RELVRLLRQYKLPAKVNLIPFNPWPGTDYECSTPERIRRFSDIVFEGGISAPVRTPRGRD 387 Query: 358 ILAACGQLKSLSKR 371 I+AACGQLKS S++ Sbjct: 388 IMAACGQLKSASEK 401 >gi|260752519|ref|YP_003225412.1| radical SAM enzyme, Cfr family [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551882|gb|ACV74828.1| radical SAM enzyme, Cfr family [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 391 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 190/369 (51%), Positives = 258/369 (69%), Gaps = 16/369 (4%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 L+G+ RE++ AL G+ ++ ++RT Q+W W+Y RG F GM+DI++ +R L +H Sbjct: 29 DLLGLSREDIRAALKSKGLDEKQAKLRTKQLWHWMYNRGAVAFDGMTDIAKTMRPWLAEH 88 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F+I PE+V +IS DGTRKWLL+ + E V+IP+ RGTLC+SSQ+GC+L Sbjct: 89 FAISRPEVVTMQISTDGTRKWLLK-----TDDGYDYEMVFIPDADRGTLCISSQIGCTLN 143 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC TGT +LVRNLT EI+ Q++LAR L ++P + GR ++N+VMMGM Sbjct: 144 CRFCNTGTMRLVRNLTVGEIVGQIMLARDSLDEWPSKPE---------GRLLTNVVMMGM 194 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL NFDNV+ +L + D G++ S+RRITLSTSG VP +AR GEEIGV LA+SLHAV+ Sbjct: 195 GEPLYNFDNVRDALKLVMDGDGIALSRRRITLSTSGVVPMMARAGEEIGVNLAVSLHAVT 254 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 +R+ +VPIN+KY ++ L+ AC YPG++NARRITFEYVMLK NDS DA L+++L+ Sbjct: 255 KAVRDEIVPINKKYGIDELLAACAAYPGVNNARRITFEYVMLKDKNDSEEDAHELVRLLQ 314 Query: 308 --GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +PAK+NLIPFNPWP Y CS + I FSE + +G S+P+R RG DI+AACGQL Sbjct: 315 YYRLPAKVNLIPFNPWPNSPYECSTPERIARFSEIVFNAGISAPVRRTRGQDIMAACGQL 374 Query: 366 KSLSKRIPK 374 KS ++R K Sbjct: 375 KSAAERQSK 383 >gi|241761759|ref|ZP_04759845.1| radical SAM enzyme, Cfr family [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373673|gb|EER63233.1| radical SAM enzyme, Cfr family [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 391 Score = 391 bits (1005), Expect = e-107, Method: Compositional matrix adjust. Identities = 190/369 (51%), Positives = 258/369 (69%), Gaps = 16/369 (4%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 L+G+ RE++ AL G+ ++ ++RT Q+W W+Y RG F GM+DI++ +R L +H Sbjct: 29 DLLGLSREDIRAALKSKGLDEKQAKLRTKQLWHWMYNRGAVAFDGMTDIAKTMRPWLAEH 88 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F+I PE+V +IS DGTRKWLL+ + E V+IP+ RGTLC+SSQ+GC+L Sbjct: 89 FAISRPEVVTMQISTDGTRKWLLK-----TDDGYDYEMVFIPDADRGTLCISSQIGCTLN 143 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC TGT +LVRNLT EI+ Q++LAR L ++P + GR ++N+VMMGM Sbjct: 144 CRFCNTGTMRLVRNLTVGEIVGQIMLARDSLDEWPSKPE---------GRLLTNVVMMGM 194 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL NFDNV+ +L + D G++ S+RRITLSTSG VP +AR GEEIGV LA+SLHAV+ Sbjct: 195 GEPLYNFDNVRDALKLVMDGDGIALSRRRITLSTSGVVPMMARAGEEIGVNLAVSLHAVT 254 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 +R+ +VPIN+KY ++ L+ AC YPG++NARRITFEYVMLK NDS DA L+++L+ Sbjct: 255 KAVRDEIVPINKKYGIDELLAACAAYPGVNNARRITFEYVMLKDKNDSEEDAHELVRLLQ 314 Query: 308 --GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +PAK+NLIPFNPWP Y CS + I FSE + +G S+P+R RG DI+AACGQL Sbjct: 315 YYRLPAKVNLIPFNPWPNSPYECSTPERIARFSEIVFNAGISAPVRRTRGQDIMAACGQL 374 Query: 366 KSLSKRIPK 374 KS ++R K Sbjct: 375 KSAAERQSK 383 >gi|85374384|ref|YP_458446.1| Fe-S-cluster redox protein [Erythrobacter litoralis HTCC2594] gi|123409605|sp|Q2N9J2|RLMN_ERYLH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|84787467|gb|ABC63649.1| predicted Fe-S-cluster redox enzyme [Erythrobacter litoralis HTCC2594] Length = 418 Score = 391 bits (1005), Expect = e-107, Method: Compositional matrix adjust. Identities = 192/372 (51%), Positives = 259/372 (69%), Gaps = 13/372 (3%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 L+G+ + ++E + G+ + ++R+ Q++ W+Y RG+ DF+ M+DI++ +R L + Sbjct: 31 DLMGLPKARIQELFAEAGLDAKQAKLRSKQVYHWLYHRGVTDFEAMTDIAKTMRPWLAER 90 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F + P +V+ + S DGTRKWLL+ + E V+IP+ RGTLCVSSQVGC+L Sbjct: 91 FIVGRPNVVEAQHSTDGTRKWLLQ-----TDDGHDFEMVFIPDADRGTLCVSSQVGCTLN 145 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP-----GCEDIEGMVIPSV-GRKISN 181 C FC+TGT +LVRNLT EI+ QV+LAR LG++P G +D+E S GR ++N Sbjct: 146 CRFCHTGTMRLVRNLTPGEIVGQVMLARDALGEWPKGRMDGLDDVEDTGHYSADGRLLTN 205 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 IVMMGMGEPL NFDNV+ +L + D GL+ SKRRITLSTSG VP + R GEEIGV LA+ Sbjct: 206 IVMMGMGEPLYNFDNVRDALKLVMDGEGLALSKRRITLSTSGVVPMMERCGEEIGVNLAV 265 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHAV+ D+R+ +VPIN+KY +E L+ AC YPG SNARRITFEYVMLK ND+ A Sbjct: 266 SLHAVTKDIRDEIVPINKKYGIEELLQACADYPGASNARRITFEYVMLKDKNDTDEHARE 325 Query: 302 LIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L+++LK +PAK+NLIPFNPWPG Y CS + I FS + G S+P+RTPRG DI Sbjct: 326 LVRLLKQYNLPAKVNLIPFNPWPGAAYECSTPERIRAFSNIVFEGGISAPVRTPRGRDID 385 Query: 360 AACGQLKSLSKR 371 AACGQLK+ +++ Sbjct: 386 AACGQLKTAAQK 397 >gi|56551928|ref|YP_162767.1| Cfr family radical SAM enzyme [Zymomonas mobilis subsp. mobilis ZM4] gi|81355066|sp|Q5NNQ4|RLMN_ZYMMO RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|56543502|gb|AAV89656.1| radical SAM enzyme, Cfr family [Zymomonas mobilis subsp. mobilis ZM4] Length = 391 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 190/369 (51%), Positives = 258/369 (69%), Gaps = 16/369 (4%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 L+G+ RE++ AL G+ ++ ++RT Q+W W+Y RG F GM+DI++ +R L +H Sbjct: 29 DLLGLSREDIRAALKSKGLDEKQAKLRTKQLWHWMYNRGAVAFDGMTDIAKTMRPWLAEH 88 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F+I PE+V +IS DGTRKWLL+ + E V+IP+ RGTLC+SSQ+GC+L Sbjct: 89 FAISRPEVVTMQISTDGTRKWLLK-----TDDGYDYEMVFIPDADRGTLCISSQIGCTLN 143 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC TGT +LVRNLT EI+ Q++LAR L ++P + GR ++N+VMMGM Sbjct: 144 CRFCNTGTMRLVRNLTVGEIVGQIMLARDSLDEWPSKPE---------GRLLTNVVMMGM 194 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL NFDNV+ +L + D G++ S+RRITLSTSG VP +AR GEEIGV LA+SLHAV+ Sbjct: 195 GEPLYNFDNVRDALKLVMDGDGIALSRRRITLSTSGVVPMMARAGEEIGVNLAVSLHAVT 254 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 +R+ +VPIN+KY ++ L+ AC YPG++NARRITFEYVMLK NDS DA L+++L+ Sbjct: 255 KVVRDEIVPINKKYGIDELLAACAAYPGVNNARRITFEYVMLKDKNDSEEDAHELVRLLQ 314 Query: 308 --GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +PAK+NLIPFNPWP Y CS + I FSE + +G S+P+R RG DI+AACGQL Sbjct: 315 YYRLPAKVNLIPFNPWPNSPYECSTPERIARFSEIVFNAGISAPVRRTRGQDIMAACGQL 374 Query: 366 KSLSKRIPK 374 KS ++R K Sbjct: 375 KSAAERQSK 383 >gi|83310223|ref|YP_420487.1| Fe-S-cluster redox protein [Magnetospirillum magneticum AMB-1] gi|82945064|dbj|BAE49928.1| Predicted Fe-S-cluster redox enzyme [Magnetospirillum magneticum AMB-1] Length = 546 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 195/368 (52%), Positives = 256/368 (69%), Gaps = 19/368 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +LIG+ R++L + IG R Q+W W+Y RG DF M+ IS+ + L Sbjct: 176 KTNLIGLSRDQLIAEMASIG----EKPFRAKQLWHWMYNRGETDFAKMTSISKSMHGALA 231 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE--KSRGTLCVSSQVG 123 + + + P + E IS D TRKWLL+F E ETVYIP+ + RG +C+S+QVG Sbjct: 232 ERYVVRRPGVTKELISADTTRKWLLKFD-----DGHEAETVYIPDADEERGAVCISTQVG 286 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+LTC FC+TGTQ LVRNL+A EI+ Q ++AR G++P +D GR++SNIV Sbjct: 287 CTLTCRFCHTGTQLLVRNLSAAEIVGQFMVARDSYGEWPTPDD--------GGRQLSNIV 338 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 +MGMGEPL NF+NV +L IA D G+ SKRRITLSTSG VP + GE +GV LA+SL Sbjct: 339 VMGMGEPLYNFENVATALEIAMDGEGIGISKRRITLSTSGVVPMMKECGERLGVNLAVSL 398 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HAV++++R+ ++PIN+KYPL+ L+ ACR YPG SNARRITFEY+MLKGINDS DA L+ Sbjct: 399 HAVTDEIRDRIMPINKKYPLKELMQACREYPGASNARRITFEYIMLKGINDSAADARALL 458 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K++KG+PAK NLIPFNPWPG E+ D K FS+ ++ +GYS+PIR PRG DILAACG Sbjct: 459 KLVKGLPAKFNLIPFNPWPGSEFDTPDIKTTKAFSDILQDAGYSAPIRMPRGRDILAACG 518 Query: 364 QLKSLSKR 371 QL+S S+R Sbjct: 519 QLRSESQR 526 >gi|205829855|sp|Q2W897|RLMN_MAGMM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase Length = 456 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 195/368 (52%), Positives = 256/368 (69%), Gaps = 19/368 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +LIG+ R++L + IG R Q+W W+Y RG DF M+ IS+ + L Sbjct: 86 KTNLIGLSRDQLIAEMASIG----EKPFRAKQLWHWMYNRGETDFAKMTSISKSMHGALA 141 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE--KSRGTLCVSSQVG 123 + + + P + E IS D TRKWLL+F E ETVYIP+ + RG +C+S+QVG Sbjct: 142 ERYVVRRPGVTKELISADTTRKWLLKFD-----DGHEAETVYIPDADEERGAVCISTQVG 196 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+LTC FC+TGTQ LVRNL+A EI+ Q ++AR G++P +D GR++SNIV Sbjct: 197 CTLTCRFCHTGTQLLVRNLSAAEIVGQFMVARDSYGEWPTPDD--------GGRQLSNIV 248 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 +MGMGEPL NF+NV +L IA D G+ SKRRITLSTSG VP + GE +GV LA+SL Sbjct: 249 VMGMGEPLYNFENVATALEIAMDGEGIGISKRRITLSTSGVVPMMKECGERLGVNLAVSL 308 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HAV++++R+ ++PIN+KYPL+ L+ ACR YPG SNARRITFEY+MLKGINDS DA L+ Sbjct: 309 HAVTDEIRDRIMPINKKYPLKELMQACREYPGASNARRITFEYIMLKGINDSAADARALL 368 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K++KG+PAK NLIPFNPWPG E+ D K FS+ ++ +GYS+PIR PRG DILAACG Sbjct: 369 KLVKGLPAKFNLIPFNPWPGSEFDTPDIKTTKAFSDILQDAGYSAPIRMPRGRDILAACG 428 Query: 364 QLKSLSKR 371 QL+S S+R Sbjct: 429 QLRSESQR 436 >gi|46201028|ref|ZP_00207935.1| COG0820: Predicted Fe-S-cluster redox enzyme [Magnetospirillum magnetotacticum MS-1] Length = 375 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 195/368 (52%), Positives = 257/368 (69%), Gaps = 19/368 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +LIG+ R++L + IG R Q+W W+Y RG DF M+ IS+ + L Sbjct: 5 KINLIGLSRDQLIAEMAAIG----EKPFRAKQLWHWMYNRGETDFAKMTSISKSMHGALA 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE--KSRGTLCVSSQVG 123 + + + P++ E IS D TRKWLL+F E ETVYIP+ + RG +C+S+QVG Sbjct: 61 ERYVVRRPQMTKELISADTTRKWLLKFD-----DGHEAETVYIPDADEDRGAVCISTQVG 115 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+LTC FC+TGTQ LVRNLTA EI+ Q ++AR G++P +D GR++SNIV Sbjct: 116 CTLTCRFCHTGTQLLVRNLTAAEIVGQFMVARDSYGEWPTPDD--------GGRQLSNIV 167 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 +MGMGEPL NF+NV +L IA D G+ SKRRITLSTSG VP + GE +GV LA+SL Sbjct: 168 VMGMGEPLYNFENVATALEIAMDGEGIGISKRRITLSTSGVVPMMKICGERLGVNLAVSL 227 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HAV++++R+ ++PIN+KYPL+ L+ ACR YPG SNARRITFEY+MLKG+NDS DA L+ Sbjct: 228 HAVTDEIRDRIMPINKKYPLKELMQACRDYPGASNARRITFEYIMLKGVNDSAADARALL 287 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K++KG+PAK NLIPFNPWPG E+ D K FS+ ++ +GYS+PIR PRG DILAACG Sbjct: 288 KLIKGLPAKFNLIPFNPWPGSEFETPDIKTTKAFSDILQDAGYSAPIRMPRGRDILAACG 347 Query: 364 QLKSLSKR 371 QL+S S+R Sbjct: 348 QLRSESQR 355 >gi|83594658|ref|YP_428410.1| hypothetical protein Rru_A3329 [Rhodospirillum rubrum ATCC 11170] gi|123753053|sp|Q2RP22|RLMN_RHORT RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|83577572|gb|ABC24123.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170] Length = 428 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 196/364 (53%), Positives = 248/364 (68%), Gaps = 17/364 (4%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L+G+ REE+ L +G R Q+W W+Y RG DF M+ + +R L + Sbjct: 49 NLVGLSREEIAALLRDMG----EKPFRAKQLWHWVYHRGETDFSAMTTLGTPLRAKLAET 104 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 + P +V E+ S DGTRKWLLRFP E ETVYIPE RG LCVSSQVGC+LT Sbjct: 105 CVVARPHVVREQRSEDGTRKWLLRFP-----DGNEAETVYIPEDDRGALCVSSQVGCTLT 159 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC+TGTQ LVRNLTA EI+ Q + AR G++P D R++SNIV+MGM Sbjct: 160 CRFCHTGTQLLVRNLTAHEIVGQFMAARDAYGEWPSPTD--------ESRQLSNIVLMGM 211 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL N+DNV K++ I D+ G++ S+RRITLSTSG VP I R G E+GV LA+SLHA Sbjct: 212 GEPLYNYDNVAKAIGILLDNEGIAVSRRRITLSTSGVVPMIRRCGAELGVNLAVSLHAAR 271 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 +++R+ ++PINRKYPL L+ ACR YPG SNARRITFEYVMLKG+NDS DA LIK+++ Sbjct: 272 DEIRDEIMPINRKYPLAELMAACREYPGASNARRITFEYVMLKGVNDSEADARALIKLVE 331 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 G+P K NLIPFNPWPG + C + I F+ + +GY++PIR PRG DILAACGQL+S Sbjct: 332 GVPCKFNLIPFNPWPGSGFECPPIRHIERFANILFEAGYTAPIRMPRGRDILAACGQLRS 391 Query: 368 LSKR 371 S R Sbjct: 392 DSLR 395 >gi|304320170|ref|YP_003853813.1| hypothetical protein PB2503_02977 [Parvularcula bermudensis HTCC2503] gi|303299073|gb|ADM08672.1| hypothetical protein PB2503_02977 [Parvularcula bermudensis HTCC2503] Length = 382 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 188/367 (51%), Positives = 254/367 (69%), Gaps = 16/367 (4%) Query: 5 KKESLIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++ L G+ R L+ +G+ + +MR SQ+W+WIY G+R+F M++I + +R Sbjct: 15 QRRRLFGLSRAALQSLFAADLGLAPKAAKMRASQVWQWIYSHGVREFDQMTNIGKALRAQ 74 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQV 122 ++ + + PE+ + ++S DGTRK+L+RF +E E V+IP R G LCVSSQV Sbjct: 75 MDALYDLSRPEVAERQVSQDGTRKYLIRF-----APGIEAEAVFIPGVGRAGALCVSSQV 129 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L C+FC+TGTQ LVRNLTAEEI+ Q+++ + LG++P D R++SNI Sbjct: 130 GCTLNCTFCHTGTQALVRNLTAEEIIAQIIVCKDDLGEWPSSRD---------DRQLSNI 180 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 V MGMGEPL N D V +++ I +D G+S S+RRIT+STSG V + +GE MLAIS Sbjct: 181 VFMGMGEPLYNLDAVAQAIDIIADGEGISISRRRITVSTSGVVSQMRALGERTEAMLAIS 240 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA + LRN LVPIN+K+PL+ L+ ACR YPG SNA+RITFEYVMLKGINDS +A L Sbjct: 241 LHATHDALRNELVPINKKWPLDALLAACRDYPGTSNAKRITFEYVMLKGINDSDAEAREL 300 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +++L+GIPAKINLIPFNPWP Y CS I F++ + ++GY+SPIRTPRG DI AAC Sbjct: 301 VRLLRGIPAKINLIPFNPWPDSPYECSSWDRIERFADIVNQAGYASPIRTPRGRDISAAC 360 Query: 363 GQLKSLS 369 GQLKS S Sbjct: 361 GQLKSES 367 >gi|149184387|ref|ZP_01862705.1| predicted Fe-S-cluster redox enzyme [Erythrobacter sp. SD-21] gi|148831707|gb|EDL50140.1| predicted Fe-S-cluster redox enzyme [Erythrobacter sp. SD-21] Length = 421 Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust. Identities = 197/386 (51%), Positives = 260/386 (67%), Gaps = 22/386 (5%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 LIG+ +E + E G+ + ++R Q++ W+Y RG+ DF+ M+DI++ +R L + Sbjct: 31 DLIGLPKERIRELFETAGLQPKQAKLRAKQVFHWLYHRGVTDFEAMTDIAKTMRPWLAER 90 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F I PE+V+ + S DGTRKWLL+ E E V+IP+ RGTLCVSSQVGC+L Sbjct: 91 FVIGRPEVVEAQHSTDGTRKWLLK-----TADGHEFEMVFIPDADRGTLCVSSQVGCTLN 145 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP-------------GCEDIEGMVIPS 174 C FC+TGT KLVRNLT EI+ QV+LAR LG++P ED EG S Sbjct: 146 CRFCHTGTMKLVRNLTPGEIVGQVMLARDALGEWPKGNMNFDYGADLDDAED-EGHYT-S 203 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234 GR ++NIVMMGMGEPL NFDNVK +L + D GL+ SKRRITLSTSG VP + R GEE Sbjct: 204 DGRLLTNIVMMGMGEPLYNFDNVKGALKLVMDGDGLALSKRRITLSTSGVVPAMERCGEE 263 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 IGV LA+SLHAV+ ++R+ +VP+N+KY +E L++AC YPG SNARRITFEYVMLK ND Sbjct: 264 IGVNLAVSLHAVTKEIRDEIVPLNKKYGIEELLEACAAYPGASNARRITFEYVMLKDKND 323 Query: 295 SPRDALNLIKILKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 + A L+++LK +PAK+NLIPFNPWPG Y S + + FS+ + G S+P+RT Sbjct: 324 TDEHARELVRLLKHYKLPAKVNLIPFNPWPGAAYDTSTPERVKRFSDIVFEGGISAPVRT 383 Query: 353 PRGLDILAACGQLKSLSKRIPKVPRQ 378 PRG DI AACGQLK+ +++ + R Sbjct: 384 PRGRDIDAACGQLKTAAEKKSRAQRD 409 >gi|296282660|ref|ZP_06860658.1| Fe-S-cluster redox protein [Citromicrobium bathyomarinum JL354] Length = 417 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 190/379 (50%), Positives = 260/379 (68%), Gaps = 13/379 (3%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 LIG+ + + E G+ + ++R+ Q++ W+Y RG+ +F+ M+DI++ +R L + Sbjct: 31 DLIGLPKARIRELFEAAGLDAKAAKLRSKQVFHWLYHRGVTEFEAMTDIAKTMRPWLTER 90 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F I PE+V+ S DGTRKW+LR + E V+IP+ RGTLC+SSQVGC+L Sbjct: 91 FVIGRPEVVEAHHSTDGTRKWVLR-----TADGNDFEMVFIPDADRGTLCISSQVGCTLN 145 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP-----GCEDIEGMV-IPSVGRKISN 181 C FC+TGT +LVRNLT EI+ QV+LAR LG++P G +++E S GR ++N Sbjct: 146 CRFCHTGTMRLVRNLTPGEIVGQVMLARDSLGEWPKGSMAGLDEVEDSAEYTSDGRLLTN 205 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 IV+MGMGEPL NFDNV+ ++ + D GL+ SKRRITLSTSG VP + R GEEIGV LA+ Sbjct: 206 IVLMGMGEPLYNFDNVRDAMKLVMDGDGLALSKRRITLSTSGVVPMMERCGEEIGVNLAV 265 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHAV D+R+ +VP+N+KY +E L+ AC YPG SNARRITFEY+MLK NDS DA Sbjct: 266 SLHAVRKDIRDEIVPLNKKYGIEELLQACADYPGASNARRITFEYIMLKDKNDSDEDARE 325 Query: 302 LIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L+++LK +PAK+NLIPFNPWPG +Y S + I FS+ + G S+P+RTPRG DI Sbjct: 326 LVRLLKQYDLPAKVNLIPFNPWPGSDYETSLPERIRAFSDIVFEGGISAPVRTPRGRDIG 385 Query: 360 AACGQLKSLSKRIPKVPRQ 378 AACGQLK+ +++ + R Sbjct: 386 AACGQLKTAAEKKSRAQRD 404 >gi|258542583|ref|YP_003188016.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus IFO 3283-01] gi|256633661|dbj|BAH99636.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus IFO 3283-01] gi|256636720|dbj|BAI02689.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus IFO 3283-03] gi|256639773|dbj|BAI05735.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus IFO 3283-07] gi|256642829|dbj|BAI08784.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus IFO 3283-22] gi|256645884|dbj|BAI11832.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus IFO 3283-26] gi|256648937|dbj|BAI14878.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus IFO 3283-32] gi|256651924|dbj|BAI17858.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654981|dbj|BAI20908.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus IFO 3283-12] Length = 408 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 190/368 (51%), Positives = 255/368 (69%), Gaps = 18/368 (4%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + L+G+ R+EL + L +IG RT Q+W WIY +G+ DF MS I++ ++ L Sbjct: 47 RRDLVGLSRDELTDILTEIG----EKPFRTKQLWHWIYHQGVTDFSRMSTIAKPLQQKLA 102 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK--SRGTLCVSSQVG 123 + F I PE + S D TRK+L RF E ETVYIP++ RG +C+SSQVG Sbjct: 103 ERFIIGRPEAATVQTSSDETRKFLFRF-----RDGQEAETVYIPDRREDRGAVCISSQVG 157 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L+C+FC+TGTQKLVRNL A EI+ Q + AR G++P + R +S IV Sbjct: 158 CTLSCTFCHTGTQKLVRNLGAAEIVSQFMAARDSYGEWPSPKG-------ETPRLLSTIV 210 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 +MGMGEPL N++NV K++ I D G+ S+RRITLSTSG VP + R G+E+G+ LA+SL Sbjct: 211 LMGMGEPLYNYENVAKAMKIIMDGEGIGLSRRRITLSTSGVVPLMDRCGDELGINLAVSL 270 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HAV NDLR+ +VP+NRKYP+E ++ ACR YP SNARRITFEY+ML+GINDS DA L+ Sbjct: 271 HAVRNDLRDEIVPLNRKYPIEEVLAACRRYPAASNARRITFEYIMLRGINDSEADARELV 330 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +++ GIPAK+NLIPFNPWPG +Y S ++ F+E + +G++SPIRTPRG DILAACG Sbjct: 331 RLISGIPAKVNLIPFNPWPGSDYKPSTREQQNRFAEIVMNAGFASPIRTPRGRDILAACG 390 Query: 364 QLKSLSKR 371 QLK+ S+R Sbjct: 391 QLKTASER 398 >gi|329115338|ref|ZP_08244092.1| Ribosomal RNA large subunit methyltransferase N [Acetobacter pomorum DM001] gi|326695317|gb|EGE47004.1| Ribosomal RNA large subunit methyltransferase N [Acetobacter pomorum DM001] Length = 408 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 189/368 (51%), Positives = 255/368 (69%), Gaps = 18/368 (4%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + L+G+ R+EL + L++IG RT Q+W WIY +G+ DF MS I++ ++ L Sbjct: 47 RRDLVGLSRDELTDILIEIG----EKPFRTKQLWHWIYHQGVTDFSRMSTIAKPLQQKLA 102 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK--SRGTLCVSSQVG 123 + F I PE + S D TRK+L RF E ETVYIP++ RG +C+SSQVG Sbjct: 103 ERFIIGRPEAATVQTSSDSTRKFLFRF-----RDGQEAETVYIPDRREDRGAVCISSQVG 157 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L+C+FC+TGTQKLVRNL A EI+ Q + AR G++P + R +S IV Sbjct: 158 CTLSCTFCHTGTQKLVRNLGAAEIVSQFMAARDSYGEWPSPKG-------ETPRLLSTIV 210 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 +MGMGEPL N++NV K++ I D G+ S+RRITLSTSG VP + R G+E+G+ LA+SL Sbjct: 211 LMGMGEPLYNYENVAKAMKIIMDGEGIGLSRRRITLSTSGVVPLMDRCGDELGINLAVSL 270 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HAV NDLR+ +VP+NRKYP+E ++ ACR YP SNARRITFEY+ML+G+NDS DA L+ Sbjct: 271 HAVRNDLRDEIVPLNRKYPIEEVLAACRRYPAASNARRITFEYIMLRGVNDSEADARELV 330 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +++ GIPAK+NLIPFNPWPG Y S ++ F+E + +G++SPIRTPRG DILAACG Sbjct: 331 RLISGIPAKVNLIPFNPWPGSAYKPSTREQQNRFAEIVMNAGFASPIRTPRGRDILAACG 390 Query: 364 QLKSLSKR 371 QLK+ S+R Sbjct: 391 QLKTASER 398 >gi|254464850|ref|ZP_05078261.1| radical SAM enzyme, Cfr family [Rhodobacterales bacterium Y4I] gi|206685758|gb|EDZ46240.1| radical SAM enzyme, Cfr family [Rhodobacterales bacterium Y4I] Length = 413 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 192/362 (53%), Positives = 253/362 (69%), Gaps = 16/362 (4%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ R+ + E L++ G P++ +MR QIW+WIY G RDF M+++++ R L Sbjct: 23 KINLVGLTRDRMREVLMEHGTPEKQAKMRVGQIWQWIYQWGKRDFAEMTNLAKAYRAQLA 82 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + F I PE+V +++S DGTRK+L+R I G E+E VYIPE+ RGTLC+SSQVGC+ Sbjct: 83 ETFEIRIPEVVSKQVSTDGTRKYLVR-----IAGGHEVEVVYIPEEDRGTLCISSQVGCT 137 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP--GCEDIEGMVIPSVGRKISNIV 183 LTCSFC+TGTQKLVRNLT EI+ QV++AR L ++P G E R +SNIV Sbjct: 138 LTCSFCHTGTQKLVRNLTPAEIVGQVMMARDDLEEWPVPGAPKEET-------RLLSNIV 190 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 +MGMGEPL NFDNV+ ++ IA D G+S S+RRITLSTSG VP IAR +EIG +LAIS Sbjct: 191 LMGMGEPLYNFDNVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAQEIGCLLAISF 250 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +N+ R++LVPIN+++ ++ L+ A YP SN+ RITFEYVML G+ND+ DA LI Sbjct: 251 HATTNETRDVLVPINKRWNIDELLQALADYPKASNSERITFEYVMLDGVNDTDEDAHRLI 310 Query: 304 KILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +K IPAKINLIPFN WPG Y S I F+ I ++GY+SPIR RG DI+AA Sbjct: 311 DHIKRYNIPAKINLIPFNEWPGSPYKRSSNNRIRAFANIIYQAGYASPIRKTRGDDIMAA 370 Query: 362 CG 363 CG Sbjct: 371 CG 372 >gi|326405176|ref|YP_004285258.1| ribosomal RNA large subunit methyltransferase N [Acidiphilium multivorum AIU301] gi|325052038|dbj|BAJ82376.1| ribosomal RNA large subunit methyltransferase N [Acidiphilium multivorum AIU301] Length = 394 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 186/364 (51%), Positives = 249/364 (68%), Gaps = 18/364 (4%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + L+G+ REEL A+ +IG R Q+W WIY +G+ DF M++I++ +R L Sbjct: 41 RRDLVGLSREELAAAMAEIG----EQPFRAKQLWHWIYHQGVTDFAAMANIAKPLRAKLA 96 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE--KSRGTLCVSSQVG 123 + F+I PE+ + +S D TRK L RF +ETVYIP+ + RG +C+SSQVG Sbjct: 97 ERFAIGRPEVAADHLSADETRKMLFRFRDH-----EAVETVYIPDVTEDRGAVCLSSQVG 151 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L+C FC+TGTQ+L RNL+A EI+ Q + R G++P + R +S IV Sbjct: 152 CTLSCRFCHTGTQRLTRNLSAAEIVGQFMAMRDAYGEWPSPKG-------ETPRLLSTIV 204 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 +MGMGEPL N++NV K++ I D G+ S+RRITLSTSG VP + R G E+GV LA+SL Sbjct: 205 LMGMGEPLYNYENVAKAMKIVMDGEGIGLSRRRITLSTSGVVPMMDRAGAELGVNLAVSL 264 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HAV++D+R+++VP+NRKY + LI ACR YPG SNARRITFEYVMLKGINDS DA L+ Sbjct: 265 HAVTDDVRDVIVPLNRKYNIAELIAACRRYPGASNARRITFEYVMLKGINDSEADARRLV 324 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +++ GIPAK+NLIPFNPWPG Y S I F+ + +GY++P+RTPRG DILAACG Sbjct: 325 ELIDGIPAKVNLIPFNPWPGSTYETSSGNAIRRFANIVMDAGYAAPVRTPRGQDILAACG 384 Query: 364 QLKS 367 QLKS Sbjct: 385 QLKS 388 >gi|148261683|ref|YP_001235810.1| radical SAM protein [Acidiphilium cryptum JF-5] gi|205829703|sp|A5G209|RLMN_ACICJ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|146403364|gb|ABQ31891.1| 23S rRNA m(2)A-2503 methyltransferase [Acidiphilium cryptum JF-5] Length = 390 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 186/364 (51%), Positives = 249/364 (68%), Gaps = 18/364 (4%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + L+G+ REEL A+ +IG R Q+W WIY +G+ DF M++I++ +R L Sbjct: 37 RRDLVGLSREELAAAMAEIG----EQPFRAKQLWHWIYHQGVTDFAAMANIAKPLRAKLA 92 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE--KSRGTLCVSSQVG 123 + F+I PE+ + +S D TRK L RF +ETVYIP+ + RG +C+SSQVG Sbjct: 93 ERFAIGRPEVAADHLSADETRKMLFRFRDH-----EAVETVYIPDVTEDRGAVCLSSQVG 147 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L+C FC+TGTQ+L RNL+A EI+ Q + R G++P + R +S IV Sbjct: 148 CTLSCRFCHTGTQRLTRNLSAAEIVGQFMAMRDAYGEWPSPKG-------ETPRLLSTIV 200 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 +MGMGEPL N++NV K++ I D G+ S+RRITLSTSG VP + R G E+GV LA+SL Sbjct: 201 LMGMGEPLYNYENVAKAMKIVMDGEGIGLSRRRITLSTSGVVPMMDRAGAELGVNLAVSL 260 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HAV++D+R+++VP+NRKY + LI ACR YPG SNARRITFEYVMLKGINDS DA L+ Sbjct: 261 HAVTDDVRDVIVPLNRKYNIAELIAACRRYPGASNARRITFEYVMLKGINDSEADARRLV 320 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +++ GIPAK+NLIPFNPWPG Y S I F+ + +GY++P+RTPRG DILAACG Sbjct: 321 ELIDGIPAKVNLIPFNPWPGSTYETSSGNAIRRFANIVMDAGYAAPVRTPRGQDILAACG 380 Query: 364 QLKS 367 QLKS Sbjct: 381 QLKS 384 >gi|58038729|ref|YP_190693.1| putative Fe-S-cluster redox protein [Gluconobacter oxydans 621H] gi|81352583|sp|Q5FUA9|RLMN_GLUOX RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|58001143|gb|AAW60037.1| Putative Fe-S-cluster redox enzyme [Gluconobacter oxydans 621H] Length = 407 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 185/370 (50%), Positives = 255/370 (68%), Gaps = 22/370 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + L+G+ REEL + +IG R Q+W WIY +G DF M+ I++ ++ L Sbjct: 47 RRDLVGLSREELAALMTEIG----EKPFRAKQLWHWIYHQGATDFSAMTTIAKPMQAKLA 102 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK--SRGTLCVSSQVG 123 +HF + P E+ S D TRK+L RF E ETVYIP++ RG +C+SSQVG Sbjct: 103 EHFVVSRPTTATEQTSVDETRKFLFRF-----RDGQEAETVYIPDRREDRGAVCISSQVG 157 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG--RKISN 181 C+L+C+FC+TGTQKLVRNL EI+ Q + AR G++P PS R +S Sbjct: 158 CTLSCTFCHTGTQKLVRNLGPAEIVGQFMAARDSYGEWPS---------PSADMPRYLST 208 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 IV+MGMGEPL N++NV K++ I D G++ S+RRITLSTSG VP + R G+E+G+ LAI Sbjct: 209 IVLMGMGEPLYNYENVAKAMRIIMDGEGIALSRRRITLSTSGVVPMMDRCGDELGINLAI 268 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHAV+N+LR+ +VP+NRKYP+E LI ACR YP SN+RRITFEY+ML+G+NDS DA Sbjct: 269 SLHAVTNELRDQIVPLNRKYPIEELIAACRRYPAASNSRRITFEYIMLRGVNDSEADARE 328 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L+++++ +PAK+NLIPFNPWPG ++ S ++ + F+ + +G++SPIRTPRG DILAA Sbjct: 329 LVRLIRDLPAKVNLIPFNPWPGSDFQPSTRQQLTKFANIVMDAGFASPIRTPRGQDILAA 388 Query: 362 CGQLKSLSKR 371 CGQLK+ S+R Sbjct: 389 CGQLKTESER 398 >gi|114327110|ref|YP_744267.1| radical SAM protein [Granulibacter bethesdensis CGDNIH1] gi|122327908|sp|Q0BV08|RLMN_GRABC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|114315284|gb|ABI61344.1| radical SAM family enzyme [Granulibacter bethesdensis CGDNIH1] Length = 397 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 190/368 (51%), Positives = 251/368 (68%), Gaps = 18/368 (4%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 ++ L+G+ RE+L EAL +IG P R Q+W WIY RG DF+ MS I++ + L Sbjct: 41 RKDLVGLSREQLTEALAEIGFPA----FRAKQLWHWIYHRGETDFRVMSSIAKPQQETLA 96 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE--KSRGTLCVSSQVG 123 + F I P + + S D TRKWL RF E ETVYIP+ + RG +C+SSQVG Sbjct: 97 ERFVISRPAVTECLTSVDETRKWLFRF-----RDGQEAETVYIPDPVEDRGAVCISSQVG 151 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L+C FC+TGTQ LVRNL EI+ Q + AR G++P + R +S IV Sbjct: 152 CTLSCRFCHTGTQPLVRNLGPAEIVGQFMAARDAYGEWPSPKG-------ETPRLLSTIV 204 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 +MGMGEPL N++NVK+++ I D G++ S+RRITLSTSG VP + R G E+ V LAISL Sbjct: 205 LMGMGEPLYNYENVKQAMRIVMDGDGIALSRRRITLSTSGVVPMMDRCGTELAVNLAISL 264 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HAV+++LR+ LVP+NRKYP+ LI ACR YP SNARRITFEY+ML GINDS +A L+ Sbjct: 265 HAVTDELRDELVPLNRKYPIRELIAACRRYPAASNARRITFEYIMLDGINDSEAEARELV 324 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +++ GIPAK+NLIPFNPWPG +Y S K + FS + +G++SPIRTPRG DILAACG Sbjct: 325 RLIAGIPAKVNLIPFNPWPGSQYTPSRPKALERFSRIVMEAGFASPIRTPRGRDILAACG 384 Query: 364 QLKSLSKR 371 QL++ S++ Sbjct: 385 QLRTESRK 392 >gi|162147642|ref|YP_001602103.1| hypothetical protein GDI_1858 [Gluconacetobacter diazotrophicus PAl 5] gi|209542271|ref|YP_002274500.1| radical SAM enzyme, Cfr family [Gluconacetobacter diazotrophicus PAl 5] gi|161786219|emb|CAP55801.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus PAl 5] gi|209529948|gb|ACI49885.1| radical SAM enzyme, Cfr family [Gluconacetobacter diazotrophicus PAl 5] Length = 404 Score = 378 bits (971), Expect = e-103, Method: Compositional matrix adjust. Identities = 185/368 (50%), Positives = 255/368 (69%), Gaps = 18/368 (4%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + L+G+ REEL +AL++IG RT Q+W WIY +G+ DF MS I++ ++ L Sbjct: 46 RRELVGLSREELTQALVEIG----EKPFRTKQLWHWIYHQGVTDFARMSSIAKPLQAKLA 101 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK--SRGTLCVSSQVG 123 + F + P+ + S D TRK+L RF E ETVYIP++ RG +C+SSQVG Sbjct: 102 ERFVVGRPDAAMVQTSTDETRKFLFRF-----RDGQEAETVYIPDRREDRGAVCISSQVG 156 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L+C+FC+TGTQKLVRNL A EI+ Q + AR G++P + R +S IV Sbjct: 157 CTLSCTFCHTGTQKLVRNLGAAEIVGQFMAARDSYGEWPSPKG-------DTPRLLSTIV 209 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 +MGMGEPL N++N+ K++ I D G+ S+RRITLSTSG +P + + G E+G+ LAISL Sbjct: 210 LMGMGEPLYNYENIAKAMKIIMDGEGIGLSRRRITLSTSGVIPMMDQCGSELGINLAISL 269 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HAV NDLR+ +VP+NRKYP+E LI ACR YP SNARRITFEY+ML+G+NDS +A L+ Sbjct: 270 HAVRNDLRDEIVPLNRKYPIEDLIAACRRYPTASNARRITFEYIMLRGVNDSEAEARELV 329 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +++ GIPAK+NLIPFNPWPG Y S ++ + F++ + +G++SPIR PRG DILAACG Sbjct: 330 RLIAGIPAKVNLIPFNPWPGSAYKPSTREQLAKFAQIVMDAGFASPIRMPRGRDILAACG 389 Query: 364 QLKSLSKR 371 QL++ S+R Sbjct: 390 QLRTESER 397 >gi|330994687|ref|ZP_08318610.1| Ribosomal RNA large subunit methyltransferase N [Gluconacetobacter sp. SXCC-1] gi|329758328|gb|EGG74849.1| Ribosomal RNA large subunit methyltransferase N [Gluconacetobacter sp. SXCC-1] Length = 412 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 186/376 (49%), Positives = 256/376 (68%), Gaps = 18/376 (4%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + L+G+ REEL + +++IG RT Q+W WIY +G DF MS I++ ++ L Sbjct: 46 RRDLVGLSREELTDIMVEIG----EKPFRTKQLWHWIYHQGATDFSRMSSIARPLQEKLA 101 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK--SRGTLCVSSQVG 123 + F + P +V E+ S D TRK+L RF E ETVYIP++ RG +C+SSQVG Sbjct: 102 ERFVVGRPGVVTEQTSQDSTRKFLFRF-----RDGQEAETVYIPDRQEDRGAVCISSQVG 156 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L+C+FC+TGTQ LVRNL A EI+ Q + AR G++P + R +S IV Sbjct: 157 CTLSCTFCHTGTQALVRNLGAAEIVGQFMAARDSYGEWPSPKG-------DTPRLLSTIV 209 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 +MGMGEPL N+DNV K++ I D G+ S+RRITLSTSG VP + + G E+G+ LA+SL Sbjct: 210 LMGMGEPLYNYDNVAKAMRIIMDGEGIGLSRRRITLSTSGVVPMMDQCGAELGINLAVSL 269 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HAV +DLR+ +VP+NRKYP+ +I ACR YP SNARRITFEY+ML+GINDS DA L+ Sbjct: 270 HAVRDDLRDEIVPLNRKYPIRDVIAACRRYPAASNARRITFEYIMLRGINDSEADARELV 329 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +++ GIPAK+NLIPFNPWPG Y S ++ + F+ + +G++SPIR PRG DILAACG Sbjct: 330 RLISGIPAKVNLIPFNPWPGSSYRPSTREQLERFANIVMDAGFASPIRMPRGRDILAACG 389 Query: 364 QLKSLSKRIPKVPRQE 379 QL++ S+R+ + R + Sbjct: 390 QLRTESQRLRRASRPD 405 >gi|296116218|ref|ZP_06834836.1| radical SAM enzyme, Cfr family protein [Gluconacetobacter hansenii ATCC 23769] gi|295977324|gb|EFG84084.1| radical SAM enzyme, Cfr family protein [Gluconacetobacter hansenii ATCC 23769] Length = 410 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 186/373 (49%), Positives = 252/373 (67%), Gaps = 18/373 (4%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + L+G+ REEL E LL+IG RT Q+W WIY +G DF MS I++ ++ L Sbjct: 47 RRELVGLSREELTEILLEIG----EKPFRTKQLWHWIYHQGATDFSCMSSIAKPLQEKLA 102 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK--SRGTLCVSSQVG 123 + F I P+ + S D TRK+L RF E ETVYIP++ RG +C+SSQVG Sbjct: 103 ERFVISRPQAATVQTSSDETRKFLFRF-----RDGQEAETVYIPDRREDRGAVCISSQVG 157 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L+C+FC+TGTQ LVRNL A EI+ Q + AR G++P R +S IV Sbjct: 158 CTLSCTFCHTGTQGLVRNLGAAEIVGQFMAARDSYGEWPSPRG-------ETPRLLSTIV 210 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 +MGMGEPL N++N+ K++ I D G+ S+RRITLSTSG +P + + G+E+G+ LAISL Sbjct: 211 LMGMGEPLYNYENIAKAMKIIMDGEGIGLSRRRITLSTSGVIPMMDQCGDELGINLAISL 270 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HAV +DLR+ LVP+NRKYP+ LI ACR YP SNARRITFEY+ML+G+NDS DA L+ Sbjct: 271 HAVRDDLRDELVPLNRKYPIADLIAACRRYPAASNARRITFEYIMLRGVNDSEADARELV 330 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +++ GIPAK+NLIPFNPWPG + S ++ + F+ + +G++SPIR PRG DILAACG Sbjct: 331 RLIAGIPAKVNLIPFNPWPGSRFQPSTREQLDRFANIVMDAGFASPIRMPRGRDILAACG 390 Query: 364 QLKSLSKRIPKVP 376 QL++ S+R + P Sbjct: 391 QLRTESQRARRQP 403 >gi|294661183|ref|YP_003573058.1| hypothetical protein Aasi_1616 [Candidatus Amoebophilus asiaticus 5a2] gi|227336333|gb|ACP20930.1| hypothetical protein Aasi_1616 [Candidatus Amoebophilus asiaticus 5a2] Length = 339 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 180/337 (53%), Positives = 234/337 (69%), Gaps = 14/337 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+W+W+Y G + F M+++ R L H+S+ + IS D T KWLL F Sbjct: 9 FRADQVWRWVYQLGAQSFSTMNNVPLLFRETLGLHYSLERTQEHQVLISKDKTIKWLLAF 68 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 E+ETV+IPE++R TLC+SSQVGC+L C FC+TGTQ LVRNL A EI+ Q+L Sbjct: 69 -----SDANEVETVWIPEQTRSTLCISSQVGCTLNCKFCHTGTQPLVRNLRAGEIVAQLL 123 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A+ +L D+P + RKI+NIVMMGMGEPL N++ V K++ I GL Sbjct: 124 HAKDVLQDWPS---------HAPTRKINNIVMMGMGEPLLNYEQVAKAIQIMMHPQGLDI 174 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+++ITLSTSG VP I R EE+GV LAISLHAV+++LRN LVPIN+KYP+ L+ ACR Sbjct: 175 SRKKITLSTSGIVPQIKRCAEELGVNLAISLHAVTDELRNHLVPINKKYPINELLQACRD 234 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y ++ R+ITFEYVMLKG+NDSP DA L+ ++KGIPAKINLIPFNPWPG E CS + Sbjct: 235 YASITGCRKITFEYVMLKGVNDSPADAKKLVDLIKGIPAKINLIPFNPWPGTELECSTES 294 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369 +I F+ I+++GY +P+RTPRG DI+AACGQLKS S Sbjct: 295 NIKQFAAIIEKAGYIAPVRTPRGEDIMAACGQLKSAS 331 >gi|328866638|gb|EGG15021.1| putative ribosomal RNA large subunit methyltransferase N [Dictyostelium fasciculatum] Length = 432 Score = 347 bits (890), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 176/381 (46%), Positives = 255/381 (66%), Gaps = 24/381 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K++LIG+ +EE+E +G+ + R Q+WKWIY +G ++ + ++S++ R +L+ Sbjct: 57 KKNLIGLSKEEIETQFETLGLE----KYRAKQVWKWIYNKGTKNIDHIDNLSKKHRDILS 112 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + ++I + + + +S DGTRK L+ F E+ETV+IPE++RGTLC+SSQVGC+ Sbjct: 113 EVYNIDHGVVNKDSLSIDGTRKLLVEFKGD------EVETVFIPERNRGTLCISSQVGCT 166 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI-SNIVM 184 C+FC+TGTQKLVRNLTA EI+ QV ARSL+ DF P+ +++ +N+V+ Sbjct: 167 FQCTFCHTGTQKLVRNLTAGEIVSQVFTARSLMHDFG----------PTTNKRLLTNVVL 216 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243 MG GEPL N+ NV K+L I +D G+S SK +ITLSTSG VP I R+G++ G+ LAISL Sbjct: 217 MGQGEPLYNYRNVSKALKILTDGEGISISKSKITLSTSGVVPLIERLGQDFPGIGLAISL 276 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +N R+ +VPIN+++P+E L+ AC ++ RIT EYVMLKGIND+ +DA NLI Sbjct: 277 HASNNKTRSEIVPINQQWPIEELVQACINFTQKYTKDRITIEYVMLKGINDAKQDAYNLI 336 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++ P+ INLIPFNPWPG Y C+ I +F+ ++R G +R PRG DILAACG Sbjct: 337 QLASQFPSLINLIPFNPWPGTIYECTPIDQIESFARILERGGLKVTVRQPRGTDILAACG 396 Query: 364 QLKSLSKRIPK--VPRQEMQI 382 QL S S++ +P QE ++ Sbjct: 397 QLVSSSQKKKGIIIPEQEGEV 417 >gi|66806177|ref|XP_636811.1| hypothetical protein DDB_G0288255 [Dictyostelium discoideum AX4] gi|60465214|gb|EAL63309.1| hypothetical protein DDB_G0288255 [Dictyostelium discoideum AX4] Length = 407 Score = 331 bits (849), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 169/381 (44%), Positives = 242/381 (63%), Gaps = 21/381 (5%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 + +KK +LIG+ ++ELE+ +LK+G P + + QIW ++Y +GI D +S+E R Sbjct: 44 DIIKKINLIGIQKDELEDKVLKLGYP----KYLSEQIWAFMYNKGIVDINSFERVSKEKR 99 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 + + + EI ++S DGTRK L+ F E+E+V+IPE RGTLCVSSQ Sbjct: 100 EEIKSKYEVNIGEITKHQLSVDGTRKLLISFDG------AEVESVFIPEGKRGTLCVSSQ 153 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC+ C+FC+TGTQK +RNLTA EI+ QV+ R +L DF S+ R ++N Sbjct: 154 VGCTFACTFCHTGTQKFIRNLTASEIVSQVIATRHVLNDFTDS---------SIKRTLTN 204 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLA 240 IV MG GEP N+ NV K++ I +D GL+ K +IT+STSG VP I R+G + G+ LA Sbjct: 205 IVFMGQGEPFYNYRNVSKAIKIITDPNGLAIGKSKITVSTSGVVPLIDRLGSDFPGIGLA 264 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ISLH+ ++ R+ +VP NR++P+ L++AC + + RIT EYVMLKG+NDS +DA Sbjct: 265 ISLHSANDKTRSEIVPANRQWPISELVEACIKFSK-NCKERITIEYVMLKGVNDSEQDAY 323 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 +L+K+ K P+ +NLIPFNPWPG +Y S ++ I FS+ + G IR PRG DILA Sbjct: 324 DLVKLSKSFPSFVNLIPFNPWPGSQYKSSSKETISQFSKILDDKGIKVTIRQPRGRDILA 383 Query: 361 ACGQLKSLSKRIPKVPRQEMQ 381 ACGQL + S + P Q ++ Sbjct: 384 ACGQLNTESIKEINKPIQPLE 404 >gi|71738083|ref|YP_273575.1| radical SAM protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|257487201|ref|ZP_05641242.1| radical SAM protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|298486020|ref|ZP_07004094.1| 23S rRNA m(2)A2503 methyltransferase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|123761313|sp|Q48LZ7|RLMN_PSE14 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|71558636|gb|AAZ37847.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv. phaseolicola 1448A] gi|298159497|gb|EFI00544.1| 23S rRNA m(2)A2503 methyltransferase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320322924|gb|EFW79014.1| radical SAM protein [Pseudomonas syringae pv. glycinea str. B076] gi|320329953|gb|EFW85941.1| radical SAM protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330874705|gb|EGH08854.1| radical SAM protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330985011|gb|EGH83114.1| radical SAM protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009183|gb|EGH89239.1| radical SAM protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 382 Score = 327 bits (839), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 170/361 (47%), Positives = 225/361 (62%), Gaps = 20/361 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ ++E+E+ IG R R Q+ KWI+ G+ DF M+++S+ +R L Sbjct: 7 KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 63 ACAEVRGPEVVSEDISSDGTRKWVVRVESGSC-----VETVYIPQGKRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV +A G P +V R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPA----------TVDRAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304 ++ LRN LVPIN+KYPL+ML+D+CR Y L R +T EY MLK IND A+ +I+ Sbjct: 228 PNDALRNQLVPINKKYPLQMLLDSCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK P KINLIPFNP+P Y I F + + ++GY+ +RT RG DI AACGQ Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347 Query: 365 L 365 L Sbjct: 348 L 348 >gi|289626156|ref|ZP_06459110.1| radical SAM protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649062|ref|ZP_06480405.1| radical SAM protein [Pseudomonas syringae pv. aesculi str. 2250] gi|330869580|gb|EGH04289.1| radical SAM protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 382 Score = 327 bits (838), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 170/361 (47%), Positives = 225/361 (62%), Gaps = 20/361 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ ++E+E+ IG R R Q+ KWI+ G+ DF M+++S+ +R L Sbjct: 7 KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 63 ACAEVRGPEVVSEDISSDGTRKWVVRVESGSC-----VETVYIPQGKRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV +A G P +V R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPA----------TVDRAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304 ++ LRN LVPIN+KYPL+ML+D+CR Y L R +T EY MLK IND A+ +I+ Sbjct: 228 PNDALRNQLVPINKKYPLQMLLDSCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK P KINLIPFNP+P Y I F + + ++GY+ +RT RG DI AACGQ Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347 Query: 365 L 365 L Sbjct: 348 L 348 >gi|237800040|ref|ZP_04588501.1| radical SAM protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022895|gb|EGI02952.1| radical SAM protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 382 Score = 325 bits (833), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 169/361 (46%), Positives = 225/361 (62%), Gaps = 20/361 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ ++E+E+ IG R R Q+ KWI+ G+ DF M+++S+ +R L Sbjct: 7 KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 63 ACAEVRGPEVVSEDISSDGTRKWVVRVESGSC-----VETVYIPQGKRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV +A G P +V R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPA----------TVDRAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304 ++ LRN LVPIN+KYPL+ML+++CR Y L R +T EY MLK IND A+ +I+ Sbjct: 228 PNDALRNQLVPINKKYPLQMLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK P KINLIPFNP+P Y I F + + ++GY+ +RT RG DI AACGQ Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347 Query: 365 L 365 L Sbjct: 348 L 348 >gi|330872882|gb|EGH07031.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330965912|gb|EGH66172.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 382 Score = 325 bits (833), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 169/361 (46%), Positives = 225/361 (62%), Gaps = 20/361 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ ++E+E+ IG R R Q+ KWI+ G+ DF M+++S+ +R L Sbjct: 7 KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 63 ACAEVRGPEVVSEDISTDGTRKWVVRVESGSC-----VETVYIPQGKRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV +A G P +V R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPA----------TVDRAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304 ++ LRN LVPIN+KYPL+ML+++CR Y L R +T EY MLK IND A+ +I+ Sbjct: 228 PNDALRNQLVPINKKYPLQMLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK P KINLIPFNP+P Y I F + + ++GY+ +RT RG DI AACGQ Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347 Query: 365 L 365 L Sbjct: 348 L 348 >gi|66044493|ref|YP_234334.1| hypothetical protein Psyr_1245 [Pseudomonas syringae pv. syringae B728a] gi|75503082|sp|Q4ZX26|RLMN_PSEU2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|63255200|gb|AAY36296.1| Conserved hypothetical protein 48 [Pseudomonas syringae pv. syringae B728a] Length = 382 Score = 325 bits (832), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 169/361 (46%), Positives = 225/361 (62%), Gaps = 20/361 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ ++E+E+ IG R R Q+ KWI+ G+ DF M+++S+ +R L Sbjct: 7 KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 63 ACAEVRGPEVVSEDISSDGTRKWVVRVESGSC-----VETVYIPQGKRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV +A G P +V R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPA----------TVDRAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304 ++ LRN LVPIN+KYPL+ML+++CR Y L R +T EY MLK IND A+ +I+ Sbjct: 228 PNDALRNQLVPINKKYPLKMLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK P KINLIPFNP+P Y I F + + ++GY+ +RT RG DI AACGQ Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347 Query: 365 L 365 L Sbjct: 348 L 348 >gi|330969073|gb|EGH69139.1| hypothetical protein PSYAR_01077 [Pseudomonas syringae pv. aceris str. M302273PT] Length = 382 Score = 325 bits (832), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 169/361 (46%), Positives = 225/361 (62%), Gaps = 20/361 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ ++E+E+ IG R R Q+ KWI+ G+ DF M+++S+ +R L Sbjct: 7 KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 63 ACAEVRGPEVVSEDISSDGTRKWVVRVESGSC-----VETVYIPQGKRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV +A G P +V R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPA----------TVDRAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304 ++ LRN LVPIN+KYPL+ML+++CR Y L R +T EY MLK IND A+ +I+ Sbjct: 228 PNDALRNQLVPINKKYPLKMLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK P KINLIPFNP+P Y I F + + ++GY+ +RT RG DI AACGQ Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347 Query: 365 L 365 L Sbjct: 348 L 348 >gi|213971521|ref|ZP_03399632.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv. tomato T1] gi|301386126|ref|ZP_07234544.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv. tomato Max13] gi|302060174|ref|ZP_07251715.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv. tomato K40] gi|302135117|ref|ZP_07261107.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213923713|gb|EEB57297.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv. tomato T1] Length = 382 Score = 324 bits (831), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 169/361 (46%), Positives = 224/361 (62%), Gaps = 20/361 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ ++E+E+ IG R R Q+ KWI+ G+ DF M+++S+ +R L Sbjct: 7 KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 63 ACAEVRGPEVVSEDISTDGTRKWVVRVESGSC-----VETVYIPQGKRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV +A G P +V R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPA----------TVDRAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVIAAMRLMMDDLGYGISKRRVTLSTSGVVPMIDELSRHIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304 ++ LRN LVPIN+KYPL+ML+++CR Y L R +T EY MLK IND A+ +I+ Sbjct: 228 PNDALRNQLVPINKKYPLQMLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK P KINLIPFNP+P Y I F + + ++GY+ +RT RG DI AACGQ Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347 Query: 365 L 365 L Sbjct: 348 L 348 >gi|15599001|ref|NP_252495.1| hypothetical protein PA3806 [Pseudomonas aeruginosa PAO1] gi|107103326|ref|ZP_01367244.1| hypothetical protein PaerPA_01004395 [Pseudomonas aeruginosa PACS2] gi|116051831|ref|YP_789326.1| hypothetical protein PA14_14830 [Pseudomonas aeruginosa UCBPP-PA14] gi|296387679|ref|ZP_06877154.1| hypothetical protein PaerPAb_05972 [Pseudomonas aeruginosa PAb1] gi|313109224|ref|ZP_07795192.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa 39016] gi|3287987|sp|Q51385|RLMN_PSEAE RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|122260978|sp|Q02RW0|RLMN_PSEAB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|9949979|gb|AAG07193.1|AE004798_16 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|1162959|gb|AAB40948.1| homologous to HI0365 in Haemophilus influenzae; ORF1 [Pseudomonas aeruginosa PAO1] gi|115587052|gb|ABJ13067.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa UCBPP-PA14] gi|310881694|gb|EFQ40288.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa 39016] Length = 379 Score = 324 bits (830), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 169/361 (46%), Positives = 223/361 (61%), Gaps = 20/361 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ + +LE+ IG R R Q+ KWI+ G+ DF M+++ + +R L Sbjct: 8 KVNLLGLTQPQLEQFFESIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVGKALREKLK 63 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I PEIV + IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 64 ASAEIRGPEIVSQDISADGTRKWVVRVASGSC-----VETVYIPQGGRGTLCVSSQAGCA 118 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q +LTA E++ QV +A G P + R I+N+VMM Sbjct: 119 LDCSFCSTGKQGFNSDLTAAEVIGQVWIANKSFGTVPA----------KIDRAITNVVMM 168 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV +++I D +G SKR++TLSTSG VP I ++GE I V LA+SLHA Sbjct: 169 GMGEPLLNFDNVVAAMNIMMDDLGYGISKRKVTLSTSGVVPMIDKLGEVIDVSLALSLHA 228 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304 +++LRN LVPIN+KYPL ML+DACR Y L R +T EY +LK +ND P A +I Sbjct: 229 PNDELRNKLVPINKKYPLGMLLDACRRYISRLGEKRVLTVEYTLLKDVNDQPEHAEQMIA 288 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK P KINLIPFNP+P Y I F + + + G++ +RT RG DI AACGQ Sbjct: 289 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDMLHKGGFNVTVRTTRGDDIDAACGQ 348 Query: 365 L 365 L Sbjct: 349 L 349 >gi|218889910|ref|YP_002438774.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa LESB58] gi|218770133|emb|CAW25895.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa LESB58] Length = 379 Score = 323 bits (829), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 169/361 (46%), Positives = 223/361 (61%), Gaps = 20/361 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ + +LE+ IG R R Q+ KWI+ G+ DF M+++ + +R L Sbjct: 8 KVNLLGLTQPQLEQFFESIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVGKALREKLK 63 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I PEIV + IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 64 ASAEIRGPEIVSQDISADGTRKWVVRVASGSC-----VETVYIPQGGRGTLCVSSQAGCA 118 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q +LTA E++ QV +A G P + R I+N+VMM Sbjct: 119 LDCSFCSTGKQGFNSDLTAAEVIGQVWIANKSFGTVPA----------KIDRAITNVVMM 168 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV +++I D +G SKR++TLSTSG VP I ++GE I V LA+SLHA Sbjct: 169 GMGEPLLNFDNVVAAMNIMMDDLGYGISKRKVTLSTSGVVPMIDKLGEVIDVSLALSLHA 228 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304 +++LRN LVPIN+KYPL ML+DACR Y L R +T EY +LK +ND P A +I Sbjct: 229 PNDELRNKLVPINKKYPLGMLLDACRRYISRLGEKRVLTVEYTLLKDVNDQPEHAEQMIA 288 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK P KINLIPFNP+P Y I F + + + G++ +RT RG DI AACGQ Sbjct: 289 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDMLHKGGFNVTVRTTRGDDIDAACGQ 348 Query: 365 L 365 L Sbjct: 349 L 349 >gi|152989129|ref|YP_001346692.1| hypothetical protein PSPA7_1308 [Pseudomonas aeruginosa PA7] gi|205829634|sp|A6V0V7|RLMN_PSEA7 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|150964287|gb|ABR86312.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7] Length = 378 Score = 322 bits (826), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 168/361 (46%), Positives = 223/361 (61%), Gaps = 20/361 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ + +LE+ IG R R Q+ KWI+ G+ DF M+++ + +R L Sbjct: 7 KVNLLGLTQPQLEQFFESIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVGKALREKLK 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I PEIV + IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 63 AFAEIRGPEIVSQDISADGTRKWVVRVASGSC-----VETVYIPQGGRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q +L+A E++ QV +A G P + R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSDLSAAEVIGQVWIANKSFGTVPA----------KIDRAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV +++I D +G SKR++TLSTSG VP I ++GE I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVVAAMNIMMDDLGYGISKRKVTLSTSGVVPMIDKLGEVIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304 +++LRN LVPIN+KYPL ML+DACR Y L R +T EY +LK +ND P A +I Sbjct: 228 PNDELRNRLVPINKKYPLTMLLDACRRYISRLGEKRVLTVEYTLLKDVNDQPEHAEQMIA 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK P KINLIPFNP+P Y I F + + + G++ +RT RG DI AACGQ Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHKGGFNVTVRTTRGDDIDAACGQ 347 Query: 365 L 365 L Sbjct: 348 L 348 >gi|146308518|ref|YP_001188983.1| radical SAM protein [Pseudomonas mendocina ymp] gi|205829652|sp|A4XY35|RLMN_PSEMY RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|145576719|gb|ABP86251.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudomonas mendocina ymp] Length = 382 Score = 322 bits (826), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 167/365 (45%), Positives = 224/365 (61%), Gaps = 20/365 (5%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 N K +L+G+ + E+E+ IG R R Q+ KWI+ G+ DF M+++ + +R Sbjct: 3 NTTGKINLLGLTQPEMEQFFESIG----EKRFRAGQVMKWIHHFGVDDFAAMTNVGKALR 58 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L I PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ Sbjct: 59 EKLEASAEIRGPEVVSENISADGTRKWVVRVASGSC-----VETVYIPQNGRGTLCVSSQ 113 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC+L CSFC TG Q +LT+ EI+ QV +A G P + R I+N Sbjct: 114 AGCALDCSFCSTGKQGFNSDLTSAEIIGQVWIANKSFGTVPA----------KIDRAITN 163 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 +VMMGMGEPL NFDNV ++ I D +G SKR++TLSTSG VP I ++ E I V LA+ Sbjct: 164 VVMMGMGEPLLNFDNVVSAMQIMMDDLGYGISKRKVTLSTSGVVPMIDKLAEVIDVSLAL 223 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDAL 300 SLHA +++LRN LVPIN+KYPL+ML+ AC+ Y L R +T EY +LKG+ND P A Sbjct: 224 SLHAPNDELRNQLVPINKKYPLDMLLAACKRYVAKLGEKRVLTIEYTLLKGVNDQPEHAE 283 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 +I +L +P KINLIPFNP+P Y I F + + ++G++ +RT RG DI A Sbjct: 284 QMIALLADVPCKINLIPFNPFPFSGYERPSNNAIRRFQDLLHKAGHNVTVRTTRGDDIDA 343 Query: 361 ACGQL 365 ACGQL Sbjct: 344 ACGQL 348 >gi|83647153|ref|YP_435588.1| Fe-S-cluster redox protein [Hahella chejuensis KCTC 2396] gi|123753570|sp|Q2SDW1|RLMN_HAHCH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|83635196|gb|ABC31163.1| predicted Fe-S-cluster redox enzyme [Hahella chejuensis KCTC 2396] Length = 378 Score = 322 bits (826), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 169/384 (44%), Positives = 240/384 (62%), Gaps = 25/384 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+GM R +LE +G + R +Q+ KW+Y G+ DF M+++S+ +R L Sbjct: 7 KINLLGMNRSDLETFFESLG----EKKFRATQLMKWMYHLGVSDFDLMTNMSKALREKLK 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + PE++ E IS DGTRKW++R + G IETVYIP+ RGTLCVSSQ+GCS Sbjct: 63 EVAEVSVPEVIYEDISADGTRKWVMR-----LAGGNSIETVYIPDNGRGTLCVSSQIGCS 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q RNL++ EI+ Q+ +A GD+ ++ R ++NIV M Sbjct: 118 LDCSFCSTGKQGFNRNLSSAEIIGQLWIAARSFGDYDLSKE----------RYVTNIVFM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ + D G SKRR+T+STSG VP + ++G+ V LAISLHA Sbjct: 168 GMGEPLLNFDNVVRACDVMMDDFGFGISKRRLTVSTSGLVPALDKLGDVTDVSLAISLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALNLIK 304 +N LR++LVP+N+KYP+E L+ AC Y G LS+ RRIT EY ++ G+NDS A L Sbjct: 228 PNNSLRDVLVPVNKKYPIEELLAACHRYLGKLSDKRRITVEYTLIAGVNDSETHAHELRD 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L+ +P KINLIPFNP+P Y + + F + + +GY + +RT RG DI AACGQ Sbjct: 288 LLRDLPCKINLIPFNPFPNSGYERPSRNATLRFQKVLSDAGYVATVRTTRGDDIDAACGQ 347 Query: 365 L----KSLSKRIPK-VPRQEMQIT 383 L + ++R K +P Q + ++ Sbjct: 348 LVGRVEDRTRRSQKYIPLQNINVS 371 >gi|226946070|ref|YP_002801143.1| hypothetical protein Avin_40320 [Azotobacter vinelandii DJ] gi|226720997|gb|ACO80168.1| Conserved hypothetical protein [Azotobacter vinelandii DJ] Length = 381 Score = 322 bits (826), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 169/366 (46%), Positives = 223/366 (60%), Gaps = 20/366 (5%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN K +L+G+ + +LE IG R R Q+ KWI+ G+ DF MS+I + + Sbjct: 1 MNETTKANLLGLTQPQLESFFESIG----EKRFRAGQVMKWIHHFGVDDFDAMSNIGKAL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L I PE+V + IS DGTRKW++R + +ETVYIP+ RGTLCVSS Sbjct: 57 REKLKACAEIRGPEVVSQDISGDGTRKWVVRVASGSC-----VETVYIPQAGRGTLCVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GCSL CSFC TG Q +LTA EI+ QV +A G PG + R I+ Sbjct: 112 QAGCSLDCSFCSTGKQGFNSDLTAAEIIGQVWIANKSFGTVPG----------KIDRAIT 161 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL NFDN ++ I D +G SKR++TLSTSG P I +G+ I V LA Sbjct: 162 NVVMMGMGEPLMNFDNAVAAMQIMMDDLGYGISKRKVTLSTSGVAPMIDELGKIIDVSLA 221 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDA 299 +SLHA +++LRN LVPINRKYPL ++DACR Y L R +T EY +LK +ND P A Sbjct: 222 LSLHAPNDELRNRLVPINRKYPLAQVLDACRRYISRLGEKRVLTVEYTLLKDVNDQPEHA 281 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++++L+ +P KINLIPFNP+P Y I F + + ++G++ +RT RG DI Sbjct: 282 AQMVELLRDVPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHKAGHNVTVRTTRGEDID 341 Query: 360 AACGQL 365 AACGQL Sbjct: 342 AACGQL 347 >gi|330957524|gb|EGH57784.1| radical SAM protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 382 Score = 322 bits (826), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 169/361 (46%), Positives = 224/361 (62%), Gaps = 20/361 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ + E+E+ IG R R Q+ KWI+ G+ DF M+++S+ +R L Sbjct: 7 KTNLLGLTQPEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDVMTNVSKALREKLK 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 63 ACAEVRGPEVVSEDISSDGTRKWVVRVESGSC-----VETVYIPQGKRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV +A G P +V R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPA----------TVDRAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304 ++ LRN LVPIN+KYPL+ML+++CR Y L R +T EY MLK IND A+ +I+ Sbjct: 228 PNDALRNQLVPINKKYPLQMLLESCRRYMSSLGEKRVLTIEYTMLKDINDQVEHAVEMIE 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK P KINLIPFNP+P Y I F + + ++GY+ +RT RG DI AACGQ Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347 Query: 365 L 365 L Sbjct: 348 L 348 >gi|28868638|ref|NP_791257.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv. tomato str. DC3000] gi|81732046|sp|Q886Z3|RLMN_PSESM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|28851876|gb|AAO54952.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv. tomato str. DC3000] gi|331019383|gb|EGH99439.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 382 Score = 322 bits (825), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 167/361 (46%), Positives = 225/361 (62%), Gaps = 20/361 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ ++E+E+ IG R R Q+ KWI+ G+ DF M+++S+ +R L Sbjct: 7 KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 63 ACAEVRGPEVVSEDISSDGTRKWVVRVESGSC-----VETVYIPQGKRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV +A G P +V R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPA----------TVDRAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304 ++ LRN LVP+N+KYPL++L+++CR Y L R +T EY MLK IND A+ +I+ Sbjct: 228 PNDALRNQLVPLNKKYPLKVLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK P KINLIPFNP+P Y I F + + ++GY+ +RT RG DI AACGQ Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347 Query: 365 L 365 L Sbjct: 348 L 348 >gi|289677951|ref|ZP_06498841.1| hypothetical protein PsyrpsF_31988 [Pseudomonas syringae pv. syringae FF5] gi|302185748|ref|ZP_07262421.1| hypothetical protein Psyrps6_05363 [Pseudomonas syringae pv. syringae 642] gi|330895885|gb|EGH28170.1| hypothetical protein PSYJA_03834 [Pseudomonas syringae pv. japonica str. M301072PT] Length = 382 Score = 322 bits (824), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 167/361 (46%), Positives = 225/361 (62%), Gaps = 20/361 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ ++E+E+ IG R R Q+ KWI+ G+ DF M+++S+ +R L Sbjct: 7 KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 63 ACAEVRGPEVVSEDISSDGTRKWVVRVESGSC-----VETVYIPQGKRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV +A G P +V R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPA----------TVDRAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304 ++ LRN LVP+N+KYPL++L+++CR Y L R +T EY MLK IND A+ +I+ Sbjct: 228 PNDALRNQLVPLNKKYPLKVLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK P KINLIPFNP+P Y I F + + ++GY+ +RT RG DI AACGQ Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347 Query: 365 L 365 L Sbjct: 348 L 348 >gi|254236710|ref|ZP_04930033.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126168641|gb|EAZ54152.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] Length = 379 Score = 321 bits (823), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 168/361 (46%), Positives = 222/361 (61%), Gaps = 20/361 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ + +LE+ IG R R Q+ KWI+ G+ DF M+++ + +R L Sbjct: 8 KVNLLGLTQPQLEQFFESIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVGKALREKLK 63 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I PEIV + IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 64 ASAEIRGPEIVSQDISADGTRKWVVRVASGSC-----VETVYIPQGGRGTLCVSSQAGCA 118 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q +LTA E++ QV +A G P + R I+N+VMM Sbjct: 119 LDCSFCSTGKQGFNSDLTAAEVIGQVWIANKSFGTVPA----------KIDRAITNVVMM 168 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GM EPL NFDNV +++I D +G SKR++TLSTSG VP I ++GE I V LA+SLHA Sbjct: 169 GMSEPLLNFDNVVAAMNIMMDDLGYGISKRKVTLSTSGVVPMIDKLGEVIDVSLALSLHA 228 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304 +++LRN LVPIN+KYPL ML+DACR Y L R +T EY +LK +ND P A +I Sbjct: 229 PNDELRNKLVPINKKYPLGMLLDACRRYISRLGEKRVLTVEYTLLKDVNDQPEHAEQMIA 288 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK P KINLIPFNP+P Y I F + + + G++ +RT RG DI AACGQ Sbjct: 289 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDMLHKGGFNVTVRTTRGDDIDAACGQ 348 Query: 365 L 365 L Sbjct: 349 L 349 >gi|307822494|ref|ZP_07652725.1| radical SAM enzyme, Cfr family [Methylobacter tundripaludum SV96] gi|307736098|gb|EFO06944.1| radical SAM enzyme, Cfr family [Methylobacter tundripaludum SV96] Length = 370 Score = 321 bits (823), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 160/333 (48%), Positives = 220/333 (66%), Gaps = 20/333 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R +Q+ KWIY G+ DF M+++S+ +R L ++ I PEIV EK++ DGT KW+++ Sbjct: 35 FRATQLLKWIYQEGVEDFDLMTNLSKSLRAYLTENCYIATPEIVLEKVATDGTCKWVMQ- 93 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G IETV+IPE+ RGTLCVSSQ+GC+L C+FC T Q RNLT EI+ Q+ Sbjct: 94 ----TGCGNRIETVFIPEEGRGTLCVSSQIGCALACTFCSTAQQGFNRNLTTAEIIGQLF 149 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 +A+ LG G +I+N+VMMGMGEPL NFDNV ++++ D Sbjct: 150 VAQKRLGP---------------GNRITNVVMMGMGEPLLNFDNVVAAMNLMMDDFTFGL 194 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 SKRR+T+STSG VP + R+ + V LA+SLHAV+++LR+ LVPIN+KYPL+ L++ACR Sbjct: 195 SKRRVTISTSGVVPAMYRLTQVCDVSLAVSLHAVTDELRDELVPINKKYPLKELMEACRD 254 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 ++ R +TFEYVML GINDS +DA L+K+LK +P+KINLIPFNP+P Y CS ++ Sbjct: 255 NAKIAPRRTVTFEYVMLDGINDSLQDARGLVKLLKTVPSKINLIPFNPFPNSAYRCSSKE 314 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F + +G + +R RG DI AACGQL Sbjct: 315 AINCFKTLLNDAGIVTTVRKTRGEDIDAACGQL 347 >gi|229592444|ref|YP_002874563.1| hypothetical protein PFLU5060 [Pseudomonas fluorescens SBW25] gi|259491993|sp|C3K1L7|RLMN_PSEFS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|229364310|emb|CAY52051.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25] Length = 382 Score = 321 bits (823), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 168/361 (46%), Positives = 224/361 (62%), Gaps = 20/361 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ + E+E+ IG R R Q+ KWI+ G+ DF M+++S+ +R L Sbjct: 7 KTNLLGLTQPEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALRDKLK 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 63 AIAEVRGPEVVSEDISSDGTRKWVVRVASGSC-----VETVYIPQGKRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV +A G P +V R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPA----------TVDRAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304 ++ LRN LVPIN+KYPL+ML+++C+ Y L R +T EY MLK IND A+ +I+ Sbjct: 228 PNDALRNQLVPINKKYPLKMLLESCQRYMATLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK P KINLIPFNP+P Y I F + + ++GY+ +RT RG DI AACGQ Sbjct: 288 LLKNTPCKINLIPFNPFPHSGYERPSNNAIRRFQDQLHQAGYNVTVRTTRGEDIDAACGQ 347 Query: 365 L 365 L Sbjct: 348 L 348 >gi|289207917|ref|YP_003459983.1| radical SAM enzyme, Cfr family [Thioalkalivibrio sp. K90mix] gi|288943548|gb|ADC71247.1| radical SAM enzyme, Cfr family [Thioalkalivibrio sp. K90mix] Length = 377 Score = 321 bits (822), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 168/359 (46%), Positives = 225/359 (62%), Gaps = 21/359 (5%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L+G R +L E L + G P R R +Q+ KW++ RG+ DF M+D+S+ +R L + Sbjct: 10 NLLGYSRSQLTELLAQWGEP----RFRATQLVKWMHQRGVTDFDAMTDVSRTLRERLARE 65 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 I PEI EK S DGT KW+LR + IETV+IPE RGTLC+SSQVGC+L Sbjct: 66 TEIALPEIALEKASGDGTVKWVLR-----LADGNAIETVFIPESGRGTLCISSQVGCALD 120 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C+FC T Q RNLTA EI+ QV LA L P E + R +SN+V+MGM Sbjct: 121 CTFCSTAQQGFNRNLTAAEIIGQVWLAMQRL---PAPEGRQ--------RAVSNVVLMGM 169 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL N+D V + + +D S+RR+TLSTSG VP + R+ E V LA+SLHA + Sbjct: 170 GEPLANYDAVVAACQLMTDDNAYGLSRRRVTLSTSGLVPALDRLSEHTDVALAVSLHAPN 229 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALNLIKIL 306 ++LR+ LVPINRKYP+ L+++CR Y + A +TFEYV+L G+ND P A L +L Sbjct: 230 DELRDRLVPINRKYPIARLMESCRRYVEATGAHSGVTFEYVLLAGVNDRPEHANQLAGVL 289 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +GIP KINLIPFNP+PG + + DI F ++++GY + +R RG DI AACGQL Sbjct: 290 RGIPGKINLIPFNPFPGAPFDRPAEGDIERFERQLQKAGYVTTVRRTRGDDIDAACGQL 348 >gi|77460825|ref|YP_350332.1| hypothetical protein Pfl01_4604 [Pseudomonas fluorescens Pf0-1] gi|123772061|sp|Q3K7B3|RLMN_PSEPF RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|77384828|gb|ABA76341.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudomonas fluorescens Pf0-1] Length = 382 Score = 320 bits (821), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 165/361 (45%), Positives = 225/361 (62%), Gaps = 20/361 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ + E+E+ IG R R Q+ KWI+ G+ DF M+++S+ +R L Sbjct: 7 KNNLLGLTQPEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 63 AVAEVRGPEVVSEDISSDGTRKWVVRVASGSC-----VETVYIPQGKRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV +A G P ++ R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPA----------TIDRAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVVAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304 ++ LRN LVPIN+KYPL+ML+++C+ Y L R +T EY +LK +ND A+ +I+ Sbjct: 228 PNDALRNQLVPINKKYPLKMLLESCQRYMSALGEKRVLTIEYTLLKDVNDKLEHAVEMIE 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK IP KINLIPFNP+P Y I F + + ++G++ +RT RG DI AACGQ Sbjct: 288 LLKDIPCKINLIPFNPFPHSGYERPSNNAIRRFQDQLHQAGFNVTVRTTRGEDIDAACGQ 347 Query: 365 L 365 L Sbjct: 348 L 348 >gi|218682815|ref|ZP_03530416.1| radical SAM enzyme, Cfr family protein [Rhizobium etli CIAT 894] Length = 240 Score = 320 bits (820), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 155/220 (70%), Positives = 181/220 (82%) Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217 LGDFP E +G ++P+ GRK+SNIVMMGMGEPL NFD VK++L IA+D GLS S+RR+ Sbjct: 6 LGDFPDREAPQGTIMPAEGRKVSNIVMMGMGEPLYNFDAVKQALLIATDGDGLSLSRRRV 65 Query: 218 TLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277 TLSTSG VP I R GEEIGVMLAISLHAV +DLR+ILVPIN+KYPL+ LI+AC+ YPGLS Sbjct: 66 TLSTSGVVPEIFRTGEEIGVMLAISLHAVRDDLRDILVPINKKYPLKELIEACKAYPGLS 125 Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTF 337 NARRITFEYVMLK +NDS DA LIK+LKG+PAKINLIPFNPWPG Y CSD + I F Sbjct: 126 NARRITFEYVMLKDVNDSLEDAKGLIKLLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKF 185 Query: 338 SECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPR 377 ++ I +GY+SPIRTPRG DILAACGQLKS S+R+ K R Sbjct: 186 ADFINSAGYASPIRTPRGRDILAACGQLKSESERMRKTER 225 >gi|312962908|ref|ZP_07777395.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas fluorescens WH6] gi|311282935|gb|EFQ61529.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas fluorescens WH6] Length = 382 Score = 320 bits (820), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 168/361 (46%), Positives = 224/361 (62%), Gaps = 20/361 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ + E+E+ IG R R Q+ KWI+ GI DF M+++S+ +R L Sbjct: 7 KTNLLGLTQPEMEKFFDSIG----EKRFRAGQVMKWIHHFGIDDFDAMTNVSKALRDKLK 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 63 TIAEVRGPEVVSEDISSDGTRKWVVRVASGSC-----VETVYIPQGKRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV +A G P +V R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPA----------TVDRAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVISAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304 ++ LRN LVPIN+KYPL+ML+++C+ Y L R +T EY +LK IND A+ +I+ Sbjct: 228 PNDALRNQLVPINKKYPLKMLLESCQRYMATLGEKRVLTIEYTLLKDINDKVEHAIEMIE 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK P KINLIPFNP+P Y I F + + ++GY+ +RT RG DI AACGQ Sbjct: 288 LLKNTPCKINLIPFNPFPHSGYERPSNNAIRRFQDQLHQAGYNVTVRTTRGEDIDAACGQ 347 Query: 365 L 365 L Sbjct: 348 L 348 >gi|220935219|ref|YP_002514118.1| radical SAM protein [Thioalkalivibrio sp. HL-EbGR7] gi|219996529|gb|ACL73131.1| radical SAM protein [Thioalkalivibrio sp. HL-EbGR7] Length = 376 Score = 320 bits (819), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 175/369 (47%), Positives = 227/369 (61%), Gaps = 32/369 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+GM R++LE +G R Q+ KWI+ + DFQ M+D+S+ +R L Sbjct: 6 KTNLLGMTRQQLEGFFTAMG----EKPFRAVQVLKWIHQHWVEDFQDMTDLSKALRERLA 61 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFP-ARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q I PE+V ++ S DGT KWLLR CI ETV+IPEK RGTLCVSSQVGC Sbjct: 62 QVAEIRAPEVVYDQASADGTHKWLLRLDDGNCI------ETVFIPEKDRGTLCVSSQVGC 115 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLA-------RSLLGDFPGCEDIEGMVIPSVGR 177 +L C+FC T Q RNL++ EI+ Q+ LA R++ G P R Sbjct: 116 ALDCTFCSTARQGFNRNLSSAEIVGQLWLANRRLAPERTVAGKAPE-------------R 162 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 +SN+V+MGMGEPL NFDNV ++ + D SKRR+TLSTSG VP + R+ E + V Sbjct: 163 VVSNVVLMGMGEPLLNFDNVVDAMRLMLDDNAYGLSKRRVTLSTSGIVPAMDRLKETLDV 222 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS-NARRITFEYVMLKGINDSP 296 LA+SLHA ++ LR+ LVPINRKYP+ L+DACR Y + +RITFEYVML+G+NDSP Sbjct: 223 ALAVSLHAPNDALRDELVPINRKYPIAELLDACRRYVREERHHQRITFEYVMLEGVNDSP 282 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 A LI +L+ +P KINLIPFNP+P Y S I F E + +GY++ R RG Sbjct: 283 EHARQLIALLRDVPCKINLIPFNPFPETRYRRSGDAAIRRFQEMLANAGYTTITRRTRGD 342 Query: 357 DILAACGQL 365 DI AACGQL Sbjct: 343 DIDAACGQL 351 >gi|330936987|gb|EGH41085.1| hypothetical protein PSYPI_01075 [Pseudomonas syringae pv. pisi str. 1704B] Length = 382 Score = 319 bits (818), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 166/361 (45%), Positives = 224/361 (62%), Gaps = 20/361 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ ++E+E+ IG R R Q+ KWI+ G+ DF M+++S+ + L Sbjct: 7 KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALSEKLK 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 63 ACAEVRGPEVVSEDISSDGTRKWVVRVESGSC-----VETVYIPQGKRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV +A G P +V R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPA----------TVDRAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304 ++ LRN LVP+N+KYPL++L+++CR Y L R +T EY MLK IND A+ +I+ Sbjct: 228 PNDALRNQLVPLNKKYPLKVLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK P KINLIPFNP+P Y I F + + ++GY+ +RT RG DI AACGQ Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347 Query: 365 L 365 L Sbjct: 348 L 348 >gi|330807644|ref|YP_004352106.1| hypothetical protein PSEBR_a933 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375752|gb|AEA67102.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 382 Score = 318 bits (816), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 165/361 (45%), Positives = 223/361 (61%), Gaps = 20/361 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ + E+E+ IG R R Q+ KWI+ G+ DF M+++ + +R L Sbjct: 7 KTNLLGLTQPEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVGKALREKLK 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I PE+V + IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 63 AVAEIRGPEVVSQDISSDGTRKWVVRVASGSC-----VETVYIPQGKRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV +A G P +V R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPA----------TVDRAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVVSAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304 ++ LRN LVPIN+KYPL+ML+++C+ Y L R +T EY +LK +ND A+ +I+ Sbjct: 228 PNDALRNQLVPINKKYPLKMLLESCQRYMSSLGEKRVLTIEYTLLKDVNDKVEHAVEMIE 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK IP KINLIPFNP+P Y I F + + +G++ +RT RG DI AACGQ Sbjct: 288 LLKNIPCKINLIPFNPFPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQ 347 Query: 365 L 365 L Sbjct: 348 L 348 >gi|70732281|ref|YP_262037.1| radical SAM protein [Pseudomonas fluorescens Pf-5] gi|123748356|sp|Q4K6U6|RLMN_PSEF5 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|68346580|gb|AAY94186.1| radical SAM enzyme, Cfr family [Pseudomonas fluorescens Pf-5] Length = 382 Score = 318 bits (816), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 165/361 (45%), Positives = 223/361 (61%), Gaps = 20/361 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ + E+E+ IG R R Q+ KWI+ G+ DF M+++ + +R L Sbjct: 7 KTNLLGLTQPEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVGKALREKLK 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 63 AVAEIRGPEVVSEDISSDGTRKWVVRVASGSC-----VETVYIPQGKRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV +A G P +V R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPA----------TVDRAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304 ++ LRN LVPIN+KYPL+ML+++C+ Y L R +T EY +LK +ND A+ +I+ Sbjct: 228 PNDALRNQLVPINKKYPLKMLLESCQRYMSALGEKRVLTIEYTLLKDVNDKLEHAVEMIE 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK +P KINLIPFNP+P Y I F + + +G++ +RT RG DI AACGQ Sbjct: 288 LLKDVPCKINLIPFNPFPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQ 347 Query: 365 L 365 L Sbjct: 348 L 348 >gi|148359081|ref|YP_001250288.1| Cfr family transporter radical SAM protein [Legionella pneumophila str. Corby] gi|296107129|ref|YP_003618829.1| radical SAM enzyme, Cfr family [Legionella pneumophila 2300/99 Alcoy] gi|205829782|sp|A5IC42|RLMN_LEGPC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|148280854|gb|ABQ54942.1| radical SAM enzyme, Cfr family [Legionella pneumophila str. Corby] gi|295649030|gb|ADG24877.1| radical SAM enzyme, Cfr family [Legionella pneumophila 2300/99 Alcoy] Length = 382 Score = 318 bits (815), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 167/334 (50%), Positives = 216/334 (64%), Gaps = 17/334 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+++WI+ GIRDF M+++ + +R+ L+Q I PEIV + S DGT KWLL+ Sbjct: 28 FRAQQLFQWIHQVGIRDFAQMTNLGKVLRNKLSQLACIDLPEIVACQKSADGTHKWLLKL 87 Query: 93 P-ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 CI ETV+IPE +RGTLCVSSQVGC+L CSFC T Q RNL+ EI+ QV Sbjct: 88 ECGNCI------ETVFIPEANRGTLCVSSQVGCALNCSFCSTAKQGFNRNLSTAEIIGQV 141 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 LA L D G D +KI+N+VMMGMGEPL NFDNV ++SI D + Sbjct: 142 WLAARELSDNNGAHD----------KKITNVVMMGMGEPLLNFDNVVSAMSIMMDDLAYG 191 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 SKRR+TLSTSG +P + R+ E V LA+SLHA +++LRN LVPIN+KYPL LI C+ Sbjct: 192 LSKRRVTLSTSGVLPEMERLREVSPVALAVSLHAPTDELRNELVPINKKYPLSQLISLCK 251 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 Y R++TFEYVMLKG+ND P A LIK+L +PAK+NLIPFNP+P +Y S + Sbjct: 252 RYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKLLHNVPAKVNLIPFNPFPLTQYQRSSR 311 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + I F + + + G ++ R RG DI AACGQL Sbjct: 312 ETIDAFRDKLIKHGINTITRKTRGDDIDAACGQL 345 >gi|54294410|ref|YP_126825.1| hypothetical protein lpl1479 [Legionella pneumophila str. Lens] gi|81368632|sp|Q5WWH4|RLMN_LEGPL RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|53754242|emb|CAH15719.1| hypothetical protein lpl1479 [Legionella pneumophila str. Lens] Length = 382 Score = 318 bits (814), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 166/334 (49%), Positives = 216/334 (64%), Gaps = 17/334 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+++WI+ GIRDF M+++ + +R+ L+Q I PEIV + S DGT KWLL+ Sbjct: 28 FRAQQLFQWIHQVGIRDFAQMTNLGKVLRNKLSQLACIDLPEIVACQKSADGTHKWLLKL 87 Query: 93 P-ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 CI ETV+IPE +RGTLCVSSQVGC+L CSFC T Q RNL+ EI+ QV Sbjct: 88 ECGNCI------ETVFIPEANRGTLCVSSQVGCALNCSFCSTAKQGFNRNLSTAEIIGQV 141 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 LA L D G D +KI+N+VMMGMGEPL NFDNV +++I D + Sbjct: 142 WLAARELSDNDGTHD----------KKITNVVMMGMGEPLLNFDNVVSAMNIMMDDLAYG 191 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 SKRR+TLSTSG +P + R+ E V LA+SLHA +++LRN LVPIN+KYPL LI C+ Sbjct: 192 LSKRRVTLSTSGVIPEMERLREVSPVALAVSLHAPTDELRNELVPINKKYPLSQLISLCK 251 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 Y R++TFEYVMLKG+ND P A LIK+L +PAK+NLIPFNP+P +Y S + Sbjct: 252 RYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKLLHNVPAKVNLIPFNPFPLTQYQRSSR 311 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + I F + + + G ++ R RG DI AACGQL Sbjct: 312 ETIDAFRDKLMKHGINTITRKTRGDDIDAACGQL 345 >gi|330813248|ref|YP_004357487.1| ribosomal RNA large subunit methyltransferase N [Candidatus Pelagibacter sp. IMCC9063] gi|327486343|gb|AEA80748.1| ribosomal RNA large subunit methyltransferase N [Candidatus Pelagibacter sp. IMCC9063] Length = 356 Score = 318 bits (814), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 156/351 (44%), Positives = 229/351 (65%), Gaps = 18/351 (5%) Query: 24 IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCD 83 + ++ MRT+QIWK++Y +G+R+ S+IS E+++ + + F+ I ++KIS D Sbjct: 22 FSLEKKKTSMRTNQIWKFVYKKGLRETSKFSNISSELKYNIEKSFNFNRTNIAEKKISKD 81 Query: 84 GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLT 143 GT KWLL+ + +ETV+IP RGTLCVSSQVGC+L C FC+TGTQ +V+NLT Sbjct: 82 GTIKWLLKLSDNNL-----VETVFIPSGKRGTLCVSSQVGCTLNCKFCHTGTQLMVKNLT 136 Query: 144 AEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI 203 EI+ Q+L+A+ L D+ +KI+NIV MGMGEP N+DNVKKS+SI Sbjct: 137 THEIINQILVAKDELNDWGS------------QKKITNIVYMGMGEPFYNYDNVKKSISI 184 Query: 204 ASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPL 263 + GL +S ++IT+ST+G I + +EIG LA+SLHA +++LR ++PIN+K+ + Sbjct: 185 LRERNGLDYSAKKITVSTAGISNEIMKAADEIGTYLALSLHAPTDELREKIMPINKKFKI 244 Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPG 323 + LI++C +Y + N +I EYV+LK IND+ A L+K++ P+K+NLI FN WPG Sbjct: 245 KDLIESCSYYSKI-NKEKIFLEYVLLKDINDTDSCAQQLVKLMSKFPSKLNLIEFNAWPG 303 Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPK 374 Y SD + + F E IK+SG+ +R RG DIL ACGQLK+ S++ K Sbjct: 304 VGYEPSDSETVQKFYEKIKKSGHIVTLRKSRGEDILGACGQLKTDSEKKRK 354 >gi|325272138|ref|ZP_08138570.1| radical SAM protein [Pseudomonas sp. TJI-51] gi|324102734|gb|EGC00149.1| radical SAM protein [Pseudomonas sp. TJI-51] Length = 381 Score = 317 bits (813), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 166/361 (45%), Positives = 219/361 (60%), Gaps = 20/361 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ + E+E+ IG R R Q+ KWI+ G+ DF M+++ + +R L Sbjct: 7 KINLLGLTQPEMEQFFDSIG----EKRFRAGQVMKWIHHFGVSDFAAMTNVGKALREKLE 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I PE+V E IS DGTRKW++R + +ETVYIP RGTLCVSSQ GC+ Sbjct: 63 AVAEIRPPEVVSEDISADGTRKWVIRVASGSC-----VETVYIPTDDRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV LA G P + R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWLANKSFGTVPA----------KIDRAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ I D +G SKRR+TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVIAAMKIMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304 +++LRN LVPIN+KYPL+ML+++C Y L R +T EY +LK +ND P A +I+ Sbjct: 228 PNDELRNKLVPINKKYPLKMLLESCMGYMATLGGKRVLTIEYTLLKDVNDQPEHAAQMIE 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L+ +P KINLIPFNP+P Y I F + + G++ RT RG DI AACGQ Sbjct: 288 LLRDVPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQ 347 Query: 365 L 365 L Sbjct: 348 L 348 >gi|218660671|ref|ZP_03516601.1| hypothetical protein RetlI_14322 [Rhizobium etli IE4771] Length = 245 Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 145/224 (64%), Positives = 184/224 (82%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K SLIG+ REE+ AL + G+ ++ ++MR +Q+W WIYVRG+ DF M+++++++R +L Sbjct: 22 EKPSLIGLSREEMAAALREKGVAEKQIKMRVAQLWNWIYVRGVSDFDHMTNVAKDMREML 81 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 QHF+I PEIV+E++S DGTRKWLLRFPAR G PVEIE VYIPE+ RGTLC+SSQVGC Sbjct: 82 KQHFTIARPEIVEEQVSNDGTRKWLLRFPARGAGRPVEIEAVYIPEEGRGTLCISSQVGC 141 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR LGDFP E +G ++P+ GRK+SNIVM Sbjct: 142 TLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNIVM 201 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228 MGMGEPL NFD VK++L IA+D GLS SKRR+TLSTSG VP I Sbjct: 202 MGMGEPLYNFDAVKQALLIATDGDGLSLSKRRVTLSTSGVVPEI 245 >gi|52841777|ref|YP_095576.1| radical SAM protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628888|gb|AAU27629.1| radical SAM enzyme, Cfr family [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 386 Score = 317 bits (812), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 166/334 (49%), Positives = 216/334 (64%), Gaps = 17/334 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+++WI+ GIRDF M+++ + +R+ L+Q I PEIV + S DGT KWLL+ Sbjct: 32 FRAQQLFQWIHQVGIRDFAQMTNLGKVLRNKLSQLACIDLPEIVACQKSADGTHKWLLKL 91 Query: 93 P-ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 CI ETV+IPE +RGTLCVSSQVGC+L CSFC T Q RNL+ EI+ QV Sbjct: 92 ECGNCI------ETVFIPEANRGTLCVSSQVGCALNCSFCSTAKQGFNRNLSTAEIIGQV 145 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 LA L D G D +KI+N+VMMGMGEPL NFDNV +++I D + Sbjct: 146 WLAARELSDNNGTHD----------KKITNVVMMGMGEPLLNFDNVVSAMNIMMDDLAYG 195 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 SKRR+TLSTSG +P + R+ E V LA+SLHA +++LRN LVPIN+KYPL LI C+ Sbjct: 196 LSKRRVTLSTSGVLPEMERLREVSPVALAVSLHAPTDELRNELVPINKKYPLSQLISLCK 255 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 Y R++TFEYVMLKG+ND P A LIK+L +PAK+NLIPFNP+P +Y S + Sbjct: 256 RYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKLLHNVPAKVNLIPFNPFPLTQYQRSSR 315 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + I F + + + G ++ R RG DI AACGQL Sbjct: 316 ETIDAFRDKLMKHGINTITRKTRGDDIDAACGQL 349 >gi|170723489|ref|YP_001751177.1| radical SAM protein [Pseudomonas putida W619] gi|205829826|sp|B1JDQ5|RLMN_PSEPW RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|169761492|gb|ACA74808.1| radical SAM enzyme, Cfr family [Pseudomonas putida W619] Length = 381 Score = 317 bits (812), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 166/361 (45%), Positives = 219/361 (60%), Gaps = 20/361 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ + E+E+ IG R R Q+ KWI+ G+ DF M+++ + +R L Sbjct: 7 KINLLGLTQPEMEQFFDSIG----EKRFRAGQVMKWIHHFGVDDFAAMTNVGKALREKLE 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I PE+V E IS DGTRKW++R + +ETVYIP RGTLCVSSQ GC+ Sbjct: 63 AVAEIRPPEVVSEDISADGTRKWVIRVASGSC-----VETVYIPTDDRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV LA G P + R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWLANKSFGTVPA----------KIDRAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ I D +G SKRR+TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVIAAMKIMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304 +++LRN LVPIN+KYPL+ML+++C Y L R +T EY +LK +ND P A +I+ Sbjct: 228 PNDELRNQLVPINKKYPLKMLLESCMGYMATLGGKRVLTVEYTLLKDVNDQPEHAAQMIE 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L+ +P KINLIPFNP+P Y I F + + G++ RT RG DI AACGQ Sbjct: 288 LLRDVPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQ 347 Query: 365 L 365 L Sbjct: 348 L 348 >gi|205829856|sp|Q5ZV93|RLMN_LEGPH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|307610246|emb|CBW99808.1| hypothetical protein LPW_15701 [Legionella pneumophila 130b] Length = 382 Score = 317 bits (812), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 166/334 (49%), Positives = 216/334 (64%), Gaps = 17/334 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+++WI+ GIRDF M+++ + +R+ L+Q I PEIV + S DGT KWLL+ Sbjct: 28 FRAQQLFQWIHQVGIRDFAQMTNLGKVLRNKLSQLACIDLPEIVACQKSADGTHKWLLKL 87 Query: 93 P-ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 CI ETV+IPE +RGTLCVSSQVGC+L CSFC T Q RNL+ EI+ QV Sbjct: 88 ECGNCI------ETVFIPEANRGTLCVSSQVGCALNCSFCSTAKQGFNRNLSTAEIIGQV 141 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 LA L D G D +KI+N+VMMGMGEPL NFDNV +++I D + Sbjct: 142 WLAARELSDNNGTHD----------KKITNVVMMGMGEPLLNFDNVVSAMNIMMDDLAYG 191 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 SKRR+TLSTSG +P + R+ E V LA+SLHA +++LRN LVPIN+KYPL LI C+ Sbjct: 192 LSKRRVTLSTSGVLPEMERLREVSPVALAVSLHAPTDELRNELVPINKKYPLSQLISLCK 251 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 Y R++TFEYVMLKG+ND P A LIK+L +PAK+NLIPFNP+P +Y S + Sbjct: 252 RYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKLLHNVPAKVNLIPFNPFPLTQYQRSSR 311 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + I F + + + G ++ R RG DI AACGQL Sbjct: 312 ETIDAFRDKLMKHGINTITRKTRGDDIDAACGQL 345 >gi|330504682|ref|YP_004381551.1| radical SAM protein [Pseudomonas mendocina NK-01] gi|328918968|gb|AEB59799.1| radical SAM protein [Pseudomonas mendocina NK-01] Length = 382 Score = 317 bits (811), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 165/365 (45%), Positives = 222/365 (60%), Gaps = 20/365 (5%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 N K +L+G+ + E+E+ IG R R Q+ KWI+ G+ DF M+++ + +R Sbjct: 3 NTTGKINLLGLTQPEMEQFFESIG----EKRFRAGQVMKWIHHFGVDDFAAMTNVGKALR 58 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L I PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ Sbjct: 59 EKLEASAEIRGPEVVSENISADGTRKWVVRVASGSC-----VETVYIPQNGRGTLCVSSQ 113 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC+L CSFC TG Q +LT+ EI+ QV +A G P + R I+N Sbjct: 114 AGCALDCSFCSTGKQGFNSDLTSAEIIGQVWIANKSFGTVPA----------KIDRAITN 163 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 +VMMGMGEPL NFDNV ++ I D +G SKR++TLSTSG VP I ++ E I V LA+ Sbjct: 164 VVMMGMGEPLLNFDNVVSAMQIMMDDLGYGISKRKVTLSTSGVVPMIDKLAEVIDVSLAL 223 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDAL 300 SLHA +++LRN LVPIN+KYPL+ML+ AC+ Y L R +T EY +LKG+ND A Sbjct: 224 SLHAPNDELRNQLVPINKKYPLDMLLAACKRYVSKLGEKRVLTIEYTLLKGVNDQLEHAE 283 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 +I +L +P KINLIPFNP+P Y I F + + ++G++ +R RG DI A Sbjct: 284 QMIALLADVPCKINLIPFNPFPFSGYERPSNNAIRRFQDLLHKAGHNVTVRATRGDDIDA 343 Query: 361 ACGQL 365 ACGQL Sbjct: 344 ACGQL 348 >gi|87118480|ref|ZP_01074379.1| radical SAM enzyme, Cfr family protein [Marinomonas sp. MED121] gi|86166114|gb|EAQ67380.1| radical SAM enzyme, Cfr family protein [Marinomonas sp. MED121] Length = 378 Score = 316 bits (810), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 168/366 (45%), Positives = 224/366 (61%), Gaps = 18/366 (4%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +KK +L+G+ +++ E IG + R +Q+ KWI+ +G DF M+D+S+ + Sbjct: 8 MTDVKKVNLLGLPPKKMIEFFESIG----EKKFRATQVLKWIHQKGADDFDQMTDVSKAL 63 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 RH L I PE+V + IS DGTRKW++R GG +ETV IP+ R TLCVSS Sbjct: 64 RHKLKDISEIRAPEVVSQNISNDGTRKWIIRTEG---GGNNCVETVLIPDGDRATLCVSS 120 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGCSL CSFC TG Q RNLT E++ QV +A G F P+ R+++ Sbjct: 121 QVGCSLDCSFCSTGKQGFNRNLTPSEVIGQVWVAIKSFGPFD----------PNGPRRVT 170 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL NF+ V ++++ D SKRR+TLSTSG VP I + E V LA Sbjct: 171 NVVMMGMGEPLMNFEPVVDAMTLMMDDNAYGMSKRRVTLSTSGVVPKIYELAERTDVSLA 230 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDA 299 ISLHA +N+LR++LVPIN+KYP+ L+ AC+HY L + R IT EY M+ G+NDS A Sbjct: 231 ISLHAPTNELRDVLVPINKKYPINELLGACQHYLTSLPDKRHITIEYTMMAGVNDSEEQA 290 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L K+LK + KINLIPFNP+P Y + F + + GY+ +RT RG DI Sbjct: 291 RALSKLLKTLECKINLIPFNPFPNSGYDKPSNNQVRRFQKVLADDGYTVTVRTTRGDDID 350 Query: 360 AACGQL 365 AACGQL Sbjct: 351 AACGQL 356 >gi|160871646|ref|ZP_02061778.1| radical SAM enzyme, Cfr family [Rickettsiella grylli] gi|159120445|gb|EDP45783.1| radical SAM enzyme, Cfr family [Rickettsiella grylli] Length = 372 Score = 315 bits (808), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 177/356 (49%), Positives = 218/356 (61%), Gaps = 23/356 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q KWI+ GI D MS+ S+ +R L I PEI+ EK S DGT+KWLLR Sbjct: 28 FRAQQALKWIHQEGITDIDKMSNFSKSLRSRLKTIAQIDLPEIIIEKKSEDGTKKWLLRL 87 Query: 93 P-ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 A C+ ETV+IPE+ RGTLCVSSQVGC+L CSFC T Q RNLT EI+ QV Sbjct: 88 TDANCV------ETVFIPERGRGTLCVSSQVGCALNCSFCSTAQQGFNRNLTVAEIIGQV 141 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 LA L D +SNIVMMGMGEPL NFD+V K++++ D G Sbjct: 142 WLAVRCLSRDSLRHD----------HTVSNIVMMGMGEPLLNFDSVVKAMNLMMDDFGYG 191 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 FSKRR+TLSTSG VP + R+ + V LAISLHA +++LR+ LVPIN+KYPL L++ CR Sbjct: 192 FSKRRVTLSTSGVVPALRRLSKASEVSLAISLHAPNDELRDRLVPINKKYPLSELLEVCR 251 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 +Y + RR+T EYVML+GIND P A LIKIL+GIP KINLIPFNP+P Y S Q Sbjct: 252 NYFRSEHRRRVTMEYVMLEGINDQPEHARQLIKILEGIPVKINLIPFNPFPFARYRRSSQ 311 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL------KSLSKRIPKVPRQEMQ 381 I F + ++G ++ R RG DI AACGQL +S KR K +Q Sbjct: 312 ITIERFKSILVKAGLNTITRKTRGEDIDAACGQLVGYVHDRSYHKRHQKAVSTSIQ 367 >gi|117926273|ref|YP_866890.1| radical SAM protein [Magnetococcus sp. MC-1] gi|205829786|sp|A0LBZ1|RLMN_MAGSM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|117610029|gb|ABK45484.1| 23S rRNA m(2)A-2503 methyltransferase [Magnetococcus sp. MC-1] Length = 356 Score = 315 bits (808), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 165/363 (45%), Positives = 225/363 (61%), Gaps = 31/363 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 L +E+L ++ E+L E R Q+W W++V+ + MSD+S + R Sbjct: 11 LTREALTSLVVEQLGEK-----------PFRARQLWSWLHVKLAQHLDEMSDLSIDFRRK 59 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L+ + + PE+ +IS DGT KWLLR + +IETVYIPE RGTLC+SSQVG Sbjct: 60 LSALSTPLRPEVSTHQISRDGTEKWLLR-----LSDGQQIETVYIPEDERGTLCISSQVG 114 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L+C FC+TG Q RNLT EI+ QVL AR L + ++++NIV Sbjct: 115 CTLSCPFCHTGAQGFARNLTPSEIVQQVLFARRTLA--------------ARDKRVTNIV 160 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 +MGMGEPL N++ V+ ++ I D GL+F R++TLST+G +P + + G E+GV LAISL Sbjct: 161 LMGMGEPLYNYEAVRDAVLILLDDSGLAFGTRKVTLSTAGLLPKMEQAGRELGVNLAISL 220 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HAV + LR+ LVP+N+KY L+ L A YP L + RR+T+EYVML G+NDS DA + Sbjct: 221 HAVRDTLRDELVPLNKKYNLQALRAATLRYP-LKSGRRVTWEYVMLHGVNDSEDDARLFV 279 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 LK IP+KINLIPFNPWPG Y S I F + + ++G+ + IR RG DI AACG Sbjct: 280 SFLKDIPSKINLIPFNPWPGVPYQSSSMTRIAAFQKILYQAGFVTVIRDRRGEDIDAACG 339 Query: 364 QLK 366 QLK Sbjct: 340 QLK 342 >gi|167031908|ref|YP_001667139.1| radical SAM protein [Pseudomonas putida GB-1] gi|205829825|sp|B0KPI4|RLMN_PSEPG RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|166858396|gb|ABY96803.1| radical SAM enzyme, Cfr family [Pseudomonas putida GB-1] Length = 381 Score = 315 bits (807), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 166/361 (45%), Positives = 219/361 (60%), Gaps = 20/361 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ + E+E+ IG R R Q+ KWI+ G+ DF M+++ + +R L Sbjct: 7 KINLLGLTQPEMEQFFDSIG----EKRFRAGQVMKWIHHFGVSDFAAMTNVGKVLREKLE 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I PE+V E IS DGTRKW++R + +ETVYIP RGTLCVSSQ GC+ Sbjct: 63 AVAEIRPPEVVSEDISADGTRKWVIRVASGSC-----VETVYIPTDDRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV LA G P V R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWLANKSFGTVPA----------KVDRAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ I D +G SKRR+TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVIAAMKIMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304 +++LRN LVPIN+KYPL++L+++C Y L R +T EY +LK +ND P A +I+ Sbjct: 228 PNDELRNKLVPINKKYPLKVLLESCMGYMSTLGGKRVLTVEYTLLKDVNDQPEHAAQMIE 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L+ +P KINLIPFNP+P Y I F + + G++ RT RG DI AACGQ Sbjct: 288 LLRDVPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQ 347 Query: 365 L 365 L Sbjct: 348 L 348 >gi|26987586|ref|NP_743011.1| radical SAM enzyme, Cfr family [Pseudomonas putida KT2440] gi|148546124|ref|YP_001266226.1| radical SAM protein [Pseudomonas putida F1] gi|81586431|sp|Q88PK0|RLMN_PSEPK RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829824|sp|A5VYT2|RLMN_PSEP1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|24982262|gb|AAN66475.1|AE016276_10 conserved hypothetical protein TIGR00048 [Pseudomonas putida KT2440] gi|148510182|gb|ABQ77042.1| radical SAM enzyme, Cfr family [Pseudomonas putida F1] gi|313497219|gb|ADR58585.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas putida BIRD-1] Length = 381 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 166/361 (45%), Positives = 219/361 (60%), Gaps = 20/361 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ + E+E+ IG R R Q+ KWI+ G+ DF M+++ + +R L Sbjct: 7 KINLLGLTQPEMEQFFDSIG----EKRFRAGQVMKWIHHFGVSDFAAMTNVGKVLREKLE 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I PE+V E IS DGTRKW++R + +ETVYIP RGTLCVSSQ GC+ Sbjct: 63 AVAEIRPPEVVSEDISADGTRKWVIRVASGSC-----VETVYIPTDDRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV LA G P V R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWLANKSFGTVPA----------KVDRAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ I D +G SKRR+TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVIAAMKIMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304 +++LRN LVPIN+KYPL++L+++C Y L R +T EY +LK +ND P A +I+ Sbjct: 228 PNDELRNKLVPINKKYPLKVLLESCMGYMSTLGGKRVLTVEYTLLKDVNDQPEHAAQMIE 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L+ +P KINLIPFNP+P Y I F + + G++ RT RG DI AACGQ Sbjct: 288 LLRDVPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQ 347 Query: 365 L 365 L Sbjct: 348 L 348 >gi|327481756|gb|AEA85066.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas stutzeri DSM 4166] Length = 382 Score = 314 bits (805), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 167/361 (46%), Positives = 219/361 (60%), Gaps = 20/361 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ + +LE IG R R Q+ KWI+ G+ DF MS++ + +R L Sbjct: 7 KVNLLGLTQPQLESFFESIG----EKRFRAGQVMKWIHHFGVDDFDAMSNLGKALREKLK 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I PEIV E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 63 ACAEIRGPEIVSEDISSDGTRKWVVRVASGSC-----VETVYIPQGGRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV +A G P + R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGTVPA----------KIDRAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ I D +G SKR++TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVVAAMQIMMDDLGYGISKRKVTLSTSGVVPMIDELAKVIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALNLIK 304 ++ LR+ LVPIN+KYPL++L+ AC+ Y L R +T EY +LKG+ND P A +I Sbjct: 228 PNDALRDQLVPINKKYPLDVLLAACKRYVSRLGEKRVLTIEYTLLKGVNDQPEHAEQMIA 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L IP KINLIPFNP+P Y I F + + + G++ +RT RG DI AACGQ Sbjct: 288 LLADIPCKINLIPFNPFPHSGYERPSNNAIRRFQDILHKGGHNVTVRTTRGEDIDAACGQ 347 Query: 365 L 365 L Sbjct: 348 L 348 >gi|205829717|sp|A4VNX4|RLMN_PSEU5 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase Length = 382 Score = 313 bits (803), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 167/361 (46%), Positives = 218/361 (60%), Gaps = 20/361 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ + +LE IG R R Q+ KWI+ G+ DF MS++ + +R L Sbjct: 7 KVNLLGLTQPQLESFFESIG----EKRFRAGQVMKWIHHFGVDDFDAMSNLGKALREKLK 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I PEIV E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 63 ACAEIRGPEIVSEDISSDGTRKWVVRVASGSC-----VETVYIPQGGRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV +A G P + R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGTVPA----------KIDRAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ I D +G SKR++TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVVAAMQIMMDDLGYGISKRKVTLSTSGVVPMIDELAKVIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALNLIK 304 + LR+ LVPIN+KYPL++L+ AC+ Y L R +T EY +LKG+ND P A +I Sbjct: 228 PNEALRDQLVPINKKYPLDVLLAACKRYVSRLGEKRVLTIEYTLLKGVNDQPEHAEQMIA 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L IP KINLIPFNP+P Y I F + + + G++ +RT RG DI AACGQ Sbjct: 288 LLADIPCKINLIPFNPFPHSGYERPSNNAIRRFQDILHKGGHNVTVRTTRGEDIDAACGQ 347 Query: 365 L 365 L Sbjct: 348 L 348 >gi|304311805|ref|YP_003811403.1| hypothetical protein HDN1F_21750 [gamma proteobacterium HdN1] gi|301797538|emb|CBL45758.1| Conserved hypothetical protein [gamma proteobacterium HdN1] Length = 410 Score = 313 bits (803), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 167/363 (46%), Positives = 231/363 (63%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+GM R ELE+ + +G R Q+ KWI+ G+ DF M+++S+++R L Sbjct: 6 EKANLLGMTRRELEDFFVSLG----EKPFRAHQVMKWIHFFGVDDFDQMTNVSRDLREKL 61 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I P I E IS DGTRKW++R + +ETV+IP+ +RGTLCVSSQVGC Sbjct: 62 KAVAVIPAPAISYENISKDGTRKWVIR-----LDNGNAVETVFIPDGNRGTLCVSSQVGC 116 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLA-RSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 SL CSFC TG Q R+LTA EI+ Q+ +A RS G D +G R I+N+V Sbjct: 117 SLDCSFCSTGKQGFQRDLTAAEIIAQLWVANRSF-----GVPDNKGH------RNITNVV 165 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N DNV ++ I D +G +++R+TLSTSG VP + + + I V LA+SL Sbjct: 166 MMGMGEPLLNLDNVVSAMEIMKDDLGYGVARKRVTLSTSGVVPKMYELFDRIDVSLAVSL 225 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNL 302 HA ++ LR+ L+PINRKYPL L+ ACR+Y ++ RR+T EYV+L GIND+ A L Sbjct: 226 HAPNDTLRDELMPINRKYPLAELLKACRYYVDKYNDGRRVTMEYVLLDGINDTFAHAAEL 285 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +++L+ +P+KINLIPFNP+P Y + + F E + ++ Y + IRT RG DI AAC Sbjct: 286 VELLRDVPSKINLIPFNPFPHAPYKRPNGYRVKAFQEVLLKADYVTTIRTTRGDDIDAAC 345 Query: 363 GQL 365 GQL Sbjct: 346 GQL 348 >gi|332678238|gb|AEE87367.1| radical SAM superfamily protein [Francisella cf. novicida Fx1] Length = 370 Score = 313 bits (802), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 161/362 (44%), Positives = 229/362 (63%), Gaps = 22/362 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ ++ +E+ + IG + H R Q++KWI+ +G+ DF M+D+ + +RH L Sbjct: 5 KVNLLGLNQKAIEDFFISIGEKKFHAR----QVFKWIHKKGVIDFDAMTDLGKNLRHKLK 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I P++V K S DGT KWL+ +GG +ETV+IPE+ RGTLCVSSQVGC+ Sbjct: 61 EKAQITIPKVVFSKASKDGTHKWLID-----VGGSA-VETVFIPEEGRGTLCVSSQVGCT 114 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q RNL+A E++ Q+ +A L G D ++NIVMM Sbjct: 115 LNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDF----------TVTNIVMM 164 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+NV ++ I D + S+R++TLSTSG VP I + E+ GV LA+SLHA Sbjct: 165 GMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHA 224 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ LRN +VPIN+KY ++ L++AC+ Y + ITFEY +++ IND+ DA L+ + Sbjct: 225 PNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEINDNLSDAEQLVAL 284 Query: 306 LKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 LK +PAKINLIPFNP+PG Y I F E ++ +G+ + +R RG DI AACG Sbjct: 285 LKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAACG 344 Query: 364 QL 365 QL Sbjct: 345 QL 346 >gi|325915372|ref|ZP_08177689.1| 23S rRNA m(2)A-2503 methyltransferase [Xanthomonas vesicatoria ATCC 35937] gi|325538419|gb|EGD10098.1| 23S rRNA m(2)A-2503 methyltransferase [Xanthomonas vesicatoria ATCC 35937] Length = 401 Score = 313 bits (802), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 164/373 (43%), Positives = 229/373 (61%), Gaps = 28/373 (7%) Query: 4 LKKESLIGMMREELEEALLK-IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 ++K++L+ + RE LE + +G R R Q+ KWI+ R + DF M+D+ + +R Sbjct: 20 MRKQNLLDLDREGLERFFAETLG----EARYRAHQVMKWIHHRYVTDFDQMTDLGKALRA 75 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L+QH ++ P +V +K S DGT KWLL A G +ETVYIP+KSRGTLCVSSQV Sbjct: 76 KLHQHAEVLVPNVVFDKPSTDGTHKWLL---AMGTDGKNAVETVYIPDKSRGTLCVSSQV 132 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C+FC T TQ RNLT EI+ QV +A LG+ +P R+++N+ Sbjct: 133 GCGLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNV 181 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+S Sbjct: 182 VMMGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSAESDVSLAVS 241 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALN 301 LHA ++ LR LVP+N+KYP+ L+++C Y S R +TFEY ++KGIND P A Sbjct: 242 LHAANDSLRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQ 301 Query: 302 LIKILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353 L ++++ K+NLIPFNP+PG Y S + +I F + + + + +R Sbjct: 302 LARLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRT 361 Query: 354 RGLDILAACGQLK 366 RG DI AACGQLK Sbjct: 362 RGDDIDAACGQLK 374 >gi|54297459|ref|YP_123828.1| hypothetical protein lpp1504 [Legionella pneumophila str. Paris] gi|81370554|sp|Q5X516|RLMN_LEGPA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|53751244|emb|CAH12655.1| hypothetical protein lpp1504 [Legionella pneumophila str. Paris] Length = 382 Score = 313 bits (802), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 165/334 (49%), Positives = 215/334 (64%), Gaps = 17/334 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+++WI+ GI DF M+++ + +R+ L+Q I PEIV + S DGT KWLL+ Sbjct: 28 FRAQQLFQWIHQVGICDFAQMTNLGKVLRNKLSQLACIDLPEIVACQKSADGTHKWLLKL 87 Query: 93 P-ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 CI ETV+IPE +RGTLCVSSQVGC+L CSFC T Q RNL+ EI+ QV Sbjct: 88 ECGNCI------ETVFIPEANRGTLCVSSQVGCALNCSFCSTAKQGFNRNLSTAEIIGQV 141 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 LA L D G D +KI+N+VMMGMGEPL NFDNV +++I D + Sbjct: 142 WLAARELSDNNGTHD----------KKITNVVMMGMGEPLLNFDNVVSAMNIMMDDLAYG 191 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 SKRR+TLSTSG +P + R+ E V LA+SLHA +++LRN LVPIN+KYPL LI C+ Sbjct: 192 LSKRRVTLSTSGVLPEMERLREVSPVALAVSLHAPTDELRNELVPINKKYPLSQLISLCK 251 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 Y R++TFEYVMLKG+ND P A LIK+L +PAK+NLIPFNP+P +Y S + Sbjct: 252 RYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKLLHNVPAKVNLIPFNPFPLTQYQRSSR 311 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + I F + + + G ++ R RG DI AACGQL Sbjct: 312 ETIDAFRDKLMKHGINTITRKTRGDDIDAACGQL 345 >gi|254374354|ref|ZP_04989836.1| hypothetical protein FTDG_00521 [Francisella novicida GA99-3548] gi|151572074|gb|EDN37728.1| hypothetical protein FTDG_00521 [Francisella novicida GA99-3548] Length = 370 Score = 313 bits (802), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 161/362 (44%), Positives = 229/362 (63%), Gaps = 22/362 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ ++ +E+ + IG + H R Q++KWI+ +G+ DF M+D+ + +RH L Sbjct: 5 KVNLLGLNQKAIEDFFISIGEKKFHAR----QVFKWIHKKGVIDFDAMTDLGKNLRHKLK 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I P++V K S DGT KWL+ +GG +ETV+IPE+ RGTLCVSSQVGC+ Sbjct: 61 EKAQITIPKVVFSKASKDGTHKWLID-----VGGSA-VETVFIPEEGRGTLCVSSQVGCT 114 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q RNL+A E++ Q+ +A L G D ++NIVMM Sbjct: 115 LNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDF----------TVTNIVMM 164 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+NV ++ I D + S+R++TLSTSG VP I + E+ GV LA+SLHA Sbjct: 165 GMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHA 224 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ LRN +VPIN+KY ++ L++AC+ Y + ITFEY +++ IND+ DA L+ + Sbjct: 225 PNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEINDNLSDAEELVAL 284 Query: 306 LKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 LK +PAKINLIPFNP+PG Y I F E ++ +G+ + +R RG DI AACG Sbjct: 285 LKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAACG 344 Query: 364 QL 365 QL Sbjct: 345 QL 346 >gi|104780237|ref|YP_606735.1| radical SAM protein [Pseudomonas entomophila L48] gi|122985951|sp|Q1IEI4|RLMN_PSEE4 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|95109224|emb|CAK13921.1| putative radical SAM enzyme, Cfr family [Pseudomonas entomophila L48] Length = 379 Score = 313 bits (802), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 165/361 (45%), Positives = 218/361 (60%), Gaps = 20/361 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ E+E+ IG R R Q+ KWI+ G+ DF M+++ + +R L Sbjct: 7 KINLLGLTLAEMEQFFDSIG----EKRFRAGQVMKWIHHFGVDDFAAMTNVGKVLREKLE 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I PE+V E IS DGTRKW++R + +ETVYIP RGTLCVSSQ GC+ Sbjct: 63 AVAEIRGPEVVSEDISADGTRKWVVRVASGSC-----VETVYIPTDDRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV LA G P + R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWLANKSFGTVPA----------KIDRAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ I + +G SKRR+TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVIAAMKIMMEDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304 +++LRN LVPIN+KYPL+ML+++C Y L R +T EY +LK +ND P A +I+ Sbjct: 228 PNDELRNKLVPINKKYPLKMLLESCMGYMSTLGGKRVLTIEYTLLKDVNDQPEHAAQMIE 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L+ +P KINLIPFNP+P Y I F + + G++ RT RG DI AACGQ Sbjct: 288 LLRDVPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQ 347 Query: 365 L 365 L Sbjct: 348 L 348 >gi|254369341|ref|ZP_04985353.1| radical SAM superfamily protein [Francisella tularensis subsp. holarctica FSC022] gi|157122291|gb|EDO66431.1| radical SAM superfamily protein [Francisella tularensis subsp. holarctica FSC022] Length = 370 Score = 313 bits (801), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 159/362 (43%), Positives = 229/362 (63%), Gaps = 22/362 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ ++ +E+ + IG + H R Q++KWI+ +G+ DF M+D+ + +RH L Sbjct: 5 KVNLLGLNQKAIEDFFISIGKKKFHAR----QVFKWIHKKGVIDFDAMTDLGKNLRHKLK 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I P++V K+S DGT KWL+ +GG +ETV+IPE+ RGTLCVSSQ+GC+ Sbjct: 61 DKAQITIPKVVFSKVSKDGTHKWLID-----VGGSA-VETVFIPEEGRGTLCVSSQIGCT 114 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q RNL+A E++ Q+ +A L G D ++NIVMM Sbjct: 115 LNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFT----------VTNIVMM 164 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+NV ++ I D + S+R++TLSTSG VP I + E+ GV LA+SLHA Sbjct: 165 GMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHA 224 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ LRN +VPIN+KY ++ L++AC+ Y + ITFEY +++ +ND+ DA L+ + Sbjct: 225 PNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEVNDNLSDAEELVAL 284 Query: 306 LKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 LK +PAKINLIPFNP+PG Y I F E ++ +G+ + +R RG DI AACG Sbjct: 285 LKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAACG 344 Query: 364 QL 365 QL Sbjct: 345 QL 346 >gi|285018369|ref|YP_003376080.1| hypothetical protein XALc_1591 [Xanthomonas albilineans GPE PC73] gi|283473587|emb|CBA16090.1| conserved hypothetical protein 48 [Xanthomonas albilineans] Length = 401 Score = 313 bits (801), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 167/372 (44%), Positives = 228/372 (61%), Gaps = 30/372 (8%) Query: 6 KESLIGMMREELEEALLK-IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +++L+ + RE LE + +G R R Q+ KWI+ R + DF+ M+D+ + +R L Sbjct: 22 RQNLLDLDREGLERFFAETLG----EARYRAHQVMKWIHHRYVTDFEQMTDLGKALRAKL 77 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 QH +I P IV +K S DGT KWLL A + G IETVYIP+K RGTLCVSSQVGC Sbjct: 78 QQHAEVIVPNIVFDKPSADGTHKWLL---AMGVDGKNAIETVYIPDKGRGTLCVSSQVGC 134 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 L CSFC T TQ RNL+ EI+ QV +A LG+ +P R+++N+VM Sbjct: 135 GLNCSFCSTATQGFNRNLSTAEIVGQVWVAARHLGN-----------VPHQQRRLTNVVM 183 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SLH Sbjct: 184 MGMGEPLMNFDNVVRAMSVMRDDLGYGLANKRVTLSTSGLVPQIDRLSGESDVSLAVSLH 243 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNL 302 A ++ LR LVP+N+KYP+ L+ AC Y +N RR +TFEY ++KGIND P A L Sbjct: 244 APNDTLRETLVPLNKKYPIAELMAACARYL-RANKRRESVTFEYTLMKGINDQPEHARQL 302 Query: 303 IKILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 ++++ K+NLIPFNP+PG Y S + +I F + + + + +R R Sbjct: 303 ARLMRQFDNAVQAANAGKVNLIPFNPFPGTRYARSGETEIRAFQKILLDAQVLTMVRRTR 362 Query: 355 GLDILAACGQLK 366 G DI AACGQLK Sbjct: 363 GDDIDAACGQLK 374 >gi|118497539|ref|YP_898589.1| radical SAM superfamily protein [Francisella tularensis subsp. novicida U112] gi|195536235|ref|ZP_03079242.1| radical SAM enzyme, Cfr family [Francisella tularensis subsp. novicida FTE] gi|208779338|ref|ZP_03246684.1| radical SAM enzyme, Cfr family [Francisella novicida FTG] gi|254372900|ref|ZP_04988389.1| hypothetical protein FTCG_00471 [Francisella tularensis subsp. novicida GA99-3549] gi|205829766|sp|A0Q6H0|RLMN_FRATN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|118423445|gb|ABK89835.1| radical SAM superfamily protein [Francisella novicida U112] gi|151570627|gb|EDN36281.1| hypothetical protein FTCG_00471 [Francisella novicida GA99-3549] gi|194372712|gb|EDX27423.1| radical SAM enzyme, Cfr family [Francisella tularensis subsp. novicida FTE] gi|208745138|gb|EDZ91436.1| radical SAM enzyme, Cfr family [Francisella novicida FTG] Length = 370 Score = 313 bits (801), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 160/362 (44%), Positives = 229/362 (63%), Gaps = 22/362 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ ++ +E+ + IG + H R Q++KWI+ +G+ DF M+D+ + +RH L Sbjct: 5 KVNLLGLNQKAIEDFFISIGEKKFHAR----QVFKWIHKKGVIDFDAMTDLGKNLRHKLK 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I P++V K S DGT KWL+ +GG +ETV+IPE+ RGTLCVSSQVGC+ Sbjct: 61 EKAQITIPKVVFSKASKDGTHKWLID-----VGGSA-VETVFIPEEGRGTLCVSSQVGCT 114 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q RNL+A E++ Q+ +A L G D ++NIVMM Sbjct: 115 LNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDF----------TVTNIVMM 164 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+NV ++ I D + S+R++TLSTSG VP I + E+ GV LA+SLHA Sbjct: 165 GMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHA 224 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ LRN +VPIN+KY ++ L++AC+ Y + ITFEY +++ +ND+ DA L+ + Sbjct: 225 PNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEVNDNLSDAEELVAL 284 Query: 306 LKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 LK +PAKINLIPFNP+PG Y I F E ++ +G+ + +R RG DI AACG Sbjct: 285 LKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAACG 344 Query: 364 QL 365 QL Sbjct: 345 QL 346 >gi|187931627|ref|YP_001891611.1| radical SAM enzyme domain, Cfr family [Francisella tularensis subsp. mediasiatica FSC147] gi|205829765|sp|B2SGH6|RLMN_FRATM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|187712536|gb|ACD30833.1| radical SAM enzyme domain, Cfr family [Francisella tularensis subsp. mediasiatica FSC147] Length = 370 Score = 312 bits (800), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 160/362 (44%), Positives = 229/362 (63%), Gaps = 22/362 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ ++ +E+ + IG + H R Q++KWI+ +G+ DF M+D+ + +RH L Sbjct: 5 KVNLLGLNQKAIEDFFISIGEKKFHAR----QVFKWIHKKGVIDFDAMTDLGKNLRHKLK 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I P++V K S DGT KWL+ +GG +ETV+IPE+ RGTLCVSSQVGC+ Sbjct: 61 EKAQITIPKVVFSKASKDGTHKWLID-----VGGSA-VETVFIPEEGRGTLCVSSQVGCT 114 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q RNL+A E++ Q+ +A L G D ++NIVMM Sbjct: 115 LNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDF----------TVTNIVMM 164 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+NV ++ I D + S+R++TLSTSG VP I + E+ GV LA+SLHA Sbjct: 165 GMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHA 224 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ LRN +VPIN+KY ++ L++AC+ Y + ITFEY +++ +ND+ DA L+ + Sbjct: 225 PNDMLRNEIVPINKKYNIDELLEACKLYAQNGPHKHITFEYTLMEEVNDNLSDAEELVAL 284 Query: 306 LKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 LK +PAKINLIPFNP+PG Y I F E ++ +G+ + +R RG DI AACG Sbjct: 285 LKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAACG 344 Query: 364 QL 365 QL Sbjct: 345 QL 346 >gi|254490112|ref|ZP_05103304.1| radical SAM enzyme, Cfr family [Methylophaga thiooxidans DMS010] gi|224464700|gb|EEF80957.1| radical SAM enzyme, Cfr family [Methylophaga thiooxydans DMS010] Length = 367 Score = 312 bits (799), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 165/376 (43%), Positives = 234/376 (62%), Gaps = 24/376 (6%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L+G+ + LE +++G R Q+ +WI+ + DF M+++S+ +R L Sbjct: 6 NLLGLDLKGLEAFFVELG----EKPFRARQLLQWIHKYRVVDFAEMTNLSKALREKLQAV 61 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 I PE++ E IS DGTRKW+++ C IETV+IPE RGTLCVSSQVGC+LT Sbjct: 62 SDIRLPEVLHEHISTDGTRKWIIKLS--CGNA---IETVFIPEGGRGTLCVSSQVGCALT 116 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C+FC T Q RNL A EI+ Q+ +A LG P R ++N+VMMGM Sbjct: 117 CTFCSTAQQGFNRNLDAAEIIAQLWIANEALGK-----------DPKGNRVVTNVVMMGM 165 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL N++NV ++++ D G S RR+TLSTSG VP I ++ E+ V LAISLHA + Sbjct: 166 GEPLANYNNVVTAMNLMRDDYGYGISWRRLTLSTSGIVPMIDKLREDCHVSLAISLHAAN 225 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 ++LR+ +VPIN+KYP++ L+ AC+ Y R IT EYVML GINDS +DA +L++ILK Sbjct: 226 DELRDQIVPINQKYPIKELLAACKRYVVGQQRRHITVEYVMLDGINDSMQDAKDLVRILK 285 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL-- 365 +P KIN+IPFNP+PG +Y CS + I F + G + +R RG DI+AACGQL Sbjct: 286 DLPTKINMIPFNPFPGTDYTCSSRNQIKRFQNYLIEQGMVATVRKTRGDDIVAACGQLAG 345 Query: 366 --KSLSKRIPKVPRQE 379 + S+R ++ +Q+ Sbjct: 346 EVQDKSRRAERMAKQQ 361 >gi|58582157|ref|YP_201173.1| hypothetical protein XOO2534 [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624049|ref|YP_451421.1| hypothetical protein XOO_2392 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|75435230|sp|Q5GZT3|RLMN_XANOR RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123521888|sp|Q2P2T0|RLMN_XANOM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829944|sp|B2SMB3|RLMN_XANOP RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|58426751|gb|AAW75788.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84367989|dbj|BAE69147.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 401 Score = 311 bits (797), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 165/372 (44%), Positives = 226/372 (60%), Gaps = 28/372 (7%) Query: 5 KKESLIGMMREELEEALLK-IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +K++L+ + RE LE +G R R Q+ KWI+ R + DF M+D+ + +R Sbjct: 21 RKQNLLDLDREGLERFFADTLG----EARYRAHQVMKWIHHRYVTDFDHMTDLGKALRAK 76 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L+QH ++ P +V +K S DGT KWLL A G IETVYIP+K RGTLCVSSQVG Sbjct: 77 LHQHAEVLVPNVVFDKPSTDGTHKWLL---AMGTDGKNAIETVYIPDKGRGTLCVSSQVG 133 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C L CSFC T TQ RNLT EI+ QV +A LG+ +P R+++N+V Sbjct: 134 CGLNCSFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVV 182 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SL Sbjct: 183 MMGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSL 242 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNL 302 HA ++ LR LVP+N+KYP+ L+++C Y S R +TFEY ++KGIND P A L Sbjct: 243 HAANDALRETLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQL 302 Query: 303 IKILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 ++++ K+NLIPFNP+PG Y S + +I F + + + + +R R Sbjct: 303 ARLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTIVRRTR 362 Query: 355 GLDILAACGQLK 366 G DI AACGQLK Sbjct: 363 GDDIDAACGQLK 374 >gi|188576716|ref|YP_001913645.1| radical SAM enzyme, Cfr family [Xanthomonas oryzae pv. oryzae PXO99A] gi|188576907|ref|YP_001913836.1| radical SAM enzyme, Cfr family [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521168|gb|ACD59113.1| radical SAM enzyme, Cfr family [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521359|gb|ACD59304.1| radical SAM enzyme, Cfr family [Xanthomonas oryzae pv. oryzae PXO99A] Length = 393 Score = 311 bits (797), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 165/372 (44%), Positives = 226/372 (60%), Gaps = 28/372 (7%) Query: 5 KKESLIGMMREELEEALLK-IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +K++L+ + RE LE +G R R Q+ KWI+ R + DF M+D+ + +R Sbjct: 13 RKQNLLDLDREGLERFFADTLG----EARYRAHQVMKWIHHRYVTDFDHMTDLGKALRAK 68 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L+QH ++ P +V +K S DGT KWLL A G IETVYIP+K RGTLCVSSQVG Sbjct: 69 LHQHAEVLVPNVVFDKPSTDGTHKWLL---AMGTDGKNAIETVYIPDKGRGTLCVSSQVG 125 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C L CSFC T TQ RNLT EI+ QV +A LG+ +P R+++N+V Sbjct: 126 CGLNCSFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVV 174 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SL Sbjct: 175 MMGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSL 234 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNL 302 HA ++ LR LVP+N+KYP+ L+++C Y S R +TFEY ++KGIND P A L Sbjct: 235 HAANDALRETLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQL 294 Query: 303 IKILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 ++++ K+NLIPFNP+PG Y S + +I F + + + + +R R Sbjct: 295 ARLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTIVRRTR 354 Query: 355 GLDILAACGQLK 366 G DI AACGQLK Sbjct: 355 GDDIDAACGQLK 366 >gi|166712105|ref|ZP_02243312.1| hypothetical protein Xoryp_11775 [Xanthomonas oryzae pv. oryzicola BLS256] Length = 393 Score = 311 bits (797), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 165/372 (44%), Positives = 226/372 (60%), Gaps = 28/372 (7%) Query: 5 KKESLIGMMREELEEALLK-IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +K++L+ + RE LE +G R R Q+ KWI+ R + DF M+D+ + +R Sbjct: 13 RKQNLLDLDREGLERFFADTLG----EARYRAHQVMKWIHHRYVTDFDHMTDLGKALRAK 68 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L+QH ++ P +V +K S DGT KWLL A G IETVYIP+K RGTLCVSSQVG Sbjct: 69 LHQHAEVLVPNVVFDKPSTDGTHKWLL---AMGTDGKNAIETVYIPDKGRGTLCVSSQVG 125 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C L CSFC T TQ RNLT EI+ QV +A LG+ +P R+++N+V Sbjct: 126 CGLNCSFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVV 174 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SL Sbjct: 175 MMGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSL 234 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNL 302 HA ++ LR LVP+N+KYP+ L+++C Y S R +TFEY ++KGIND P A L Sbjct: 235 HAANDALRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQL 294 Query: 303 IKILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 ++++ K+NLIPFNP+PG Y S + +I F + + + + +R R Sbjct: 295 ARLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTR 354 Query: 355 GLDILAACGQLK 366 G DI AACGQLK Sbjct: 355 GDDIDAACGQLK 366 >gi|205829947|sp|Q8PKZ1|RLMN_XANAC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase Length = 401 Score = 311 bits (797), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 165/372 (44%), Positives = 226/372 (60%), Gaps = 28/372 (7%) Query: 5 KKESLIGMMREELEEALLK-IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +K++L+ + RE LE +G R R Q+ KWI+ R + DF M+D+ + +R Sbjct: 21 RKQNLLDLDREGLERFFADTLG----EARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAK 76 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L+QH ++ P +V +K S DGT KWLL A G IETVYIP+K RGTLCVSSQVG Sbjct: 77 LHQHAEVLVPNVVFDKPSADGTHKWLL---AMGTDGKNAIETVYIPDKGRGTLCVSSQVG 133 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C L CSFC T TQ RNLT EI+ QV +A LG+ +P R+++N+V Sbjct: 134 CGLNCSFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVV 182 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SL Sbjct: 183 MMGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSL 242 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNL 302 HA ++ LR LVP+N+KYP+ L+++C Y S R +TFEY ++KGIND P A L Sbjct: 243 HAANDALRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQL 302 Query: 303 IKILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 ++++ K+NLIPFNP+PG Y S + +I F + + + + +R R Sbjct: 303 ARLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTR 362 Query: 355 GLDILAACGQLK 366 G DI AACGQLK Sbjct: 363 GDDIDAACGQLK 374 >gi|300113467|ref|YP_003760042.1| radical SAM enzyme, Cfr family [Nitrosococcus watsonii C-113] gi|299539404|gb|ADJ27721.1| radical SAM enzyme, Cfr family [Nitrosococcus watsonii C-113] Length = 372 Score = 311 bits (796), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 165/333 (49%), Positives = 210/333 (63%), Gaps = 16/333 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WIY R + DF M+D+++ +R L + I PEIV + S DGTRKWLLR Sbjct: 28 FRARQVLRWIYQRFVTDFSAMTDLNKSLRKRLAESAVISLPEIVQQHRSADGTRKWLLR- 86 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 I G IETV+IPE+ RGTLC+SSQVGC L CSFC TG Q RNL EI+ Q+ Sbjct: 87 ----IHGNNCIETVFIPEEDRGTLCISSQVGCILDCSFCATGKQGFNRNLAISEIIGQLW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 LA +LG P E I I+N+VMMGMGEPL NF+NV ++++ D Sbjct: 143 LANKILGRTPKGERI-----------ITNVVMMGMGEPLANFNNVVAAMNLMLDDFSYGL 191 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S RR+TLST+G VP I R+ V LA+SLHA ++ LR+ LVP+N+KYPLE L+ ACR Sbjct: 192 SWRRVTLSTAGMVPAIDRLRAVCPVSLAVSLHAPTDKLRDELVPLNKKYPLEDLLSACRR 251 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y R +TFEYVML +NDS A L+++L+G+PAK+NLIPFNP+PG Y SD + Sbjct: 252 YVAGDRRRAVTFEYVMLADVNDSFSHARALLRLLQGLPAKVNLIPFNPFPGSVYRRSDAE 311 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F E + R G + R RG DI AACGQL Sbjct: 312 TIDRFREKLLRGGIMTVTRKTRGDDIAAACGQL 344 >gi|21242760|ref|NP_642342.1| hypothetical protein XAC2016 [Xanthomonas axonopodis pv. citri str. 306] gi|21108240|gb|AAM36878.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 405 Score = 311 bits (796), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 165/372 (44%), Positives = 226/372 (60%), Gaps = 28/372 (7%) Query: 5 KKESLIGMMREELEEALLK-IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +K++L+ + RE LE +G R R Q+ KWI+ R + DF M+D+ + +R Sbjct: 25 RKQNLLDLDREGLERFFADTLG----EARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAK 80 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L+QH ++ P +V +K S DGT KWLL A G IETVYIP+K RGTLCVSSQVG Sbjct: 81 LHQHAEVLVPNVVFDKPSADGTHKWLL---AMGTDGKNAIETVYIPDKGRGTLCVSSQVG 137 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C L CSFC T TQ RNLT EI+ QV +A LG+ +P R+++N+V Sbjct: 138 CGLNCSFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVV 186 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SL Sbjct: 187 MMGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSL 246 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNL 302 HA ++ LR LVP+N+KYP+ L+++C Y S R +TFEY ++KGIND P A L Sbjct: 247 HAANDALRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQL 306 Query: 303 IKILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 ++++ K+NLIPFNP+PG Y S + +I F + + + + +R R Sbjct: 307 ARLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTR 366 Query: 355 GLDILAACGQLK 366 G DI AACGQLK Sbjct: 367 GDDIDAACGQLK 378 >gi|262276957|ref|ZP_06054750.1| radical SAM enzyme, Cfr family [alpha proteobacterium HIMB114] gi|262224060|gb|EEY74519.1| radical SAM enzyme, Cfr family [alpha proteobacterium HIMB114] Length = 357 Score = 311 bits (796), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 152/348 (43%), Positives = 223/348 (64%), Gaps = 18/348 (5%) Query: 24 IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCD 83 + ++ MR +Q+WK+ Y +G D S+++Q +R L + + P+I ++++S D Sbjct: 20 FNLDKKKSSMRANQVWKFYYQKGYSDPNLFSNLTQSLRDELLKIVNFSRPKIKNKQVSKD 79 Query: 84 GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLT 143 GT KWLL + + +ETVYIP ++ TLC+SSQVGC+L C FC+TG Q LV+NL+ Sbjct: 80 GTIKWLLELNDKNL-----VETVYIPSETHSTLCISSQVGCTLNCKFCHTGIQPLVKNLS 134 Query: 144 AEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI 203 + EI+ Q+L+A+ L D+ +KI+NIV MGMGEP NF+N+KKS+ I Sbjct: 135 SNEIISQILIAKDELNDWKE------------QKKINNIVYMGMGEPFYNFENIKKSVEI 182 Query: 204 ASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPL 263 D GL+FS ++IT+STSG PNI + EIG LA+SLHA +N++RN ++PIN+KY + Sbjct: 183 LKDENGLNFSNKKITVSTSGISPNIKKAANEIGTYLALSLHAPNNEIRNEIMPINKKYNI 242 Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPG 323 E +I+ C Y N +I EYV+LK +ND+ + A L KI+ P K+NLI FNPWPG Sbjct: 243 ENIIEHCSQYAK-ENGEKIFIEYVLLKDVNDTEQCAKELSKIMSQFPCKLNLIQFNPWPG 301 Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 +Y + ++ F E IK++G+ +R RG DIL ACGQLK+ S+R Sbjct: 302 VKYKTATKEQTSKFIEIIKKNGHVVTLRKSRGDDILGACGQLKTASER 349 >gi|296314505|ref|ZP_06864446.1| radical SAM enzyme, Cfr family [Neisseria polysaccharea ATCC 43768] gi|296838812|gb|EFH22750.1| radical SAM enzyme, Cfr family [Neisseria polysaccharea ATCC 43768] Length = 364 Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 156/333 (46%), Positives = 217/333 (65%), Gaps = 16/333 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +W++ G ++F M+D+++ +RH LN+ SI P+++ + S DGTRKWLL Sbjct: 25 FRAKQVMRWMHQSGAQNFDEMTDLAKSLRHKLNEQASIEIPKLMMSQESSDGTRKWLLD- 83 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE RGTLC+SSQVGC+L C+FC TG Q RNLTA EI+ Q+ Sbjct: 84 ----VGTGNGVETVFIPESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLW 139 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A +G V P R ISN+VMMGMGEP+ NFDNV +LSI D G Sbjct: 140 WANKAMG-----------VTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGL 188 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+T+STSG VP + R+ + + V LA+SLHA ++++RN +VP+N+KYPL+ L+ ACR Sbjct: 189 SRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACRR 248 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + ITFEYVML GIND + A LI+++K +P K NLIPFNP+P Y S + Sbjct: 249 YLVKAPRDFITFEYVMLDGINDRAQHARELIELVKDVPCKFNLIPFNPFPNSGYERSSNE 308 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +I F + ++++G+ +R RG DI AACGQL Sbjct: 309 NIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341 >gi|325927620|ref|ZP_08188849.1| 23S rRNA m(2)A-2503 methyltransferase family [Xanthomonas perforans 91-118] gi|325541987|gb|EGD13500.1| 23S rRNA m(2)A-2503 methyltransferase family [Xanthomonas perforans 91-118] Length = 401 Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 164/372 (44%), Positives = 226/372 (60%), Gaps = 28/372 (7%) Query: 5 KKESLIGMMREELEEALLK-IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +K++L+ + RE LE +G R R Q+ KWI+ R + DF M+D+ + +R Sbjct: 21 RKQNLLDLDREGLERFFADTLG----EARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAK 76 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L+QH ++ P +V +K S DGT KWLL A G IETVYIP+K RGTLCVSSQVG Sbjct: 77 LHQHAEVLVPNVVFDKPSADGTHKWLLAMGA---DGKNAIETVYIPDKGRGTLCVSSQVG 133 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C L C+FC T TQ RNLT EI+ QV +A LG+ +P R+++N+V Sbjct: 134 CGLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVV 182 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SL Sbjct: 183 MMGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSL 242 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNL 302 HA ++ LR LVP+N+KYP+ L+++C Y S R +TFEY ++KGIND P A L Sbjct: 243 HAANDTLRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQL 302 Query: 303 IKILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 ++++ K+NLIPFNP+PG Y S + +I F + + + + +R R Sbjct: 303 ARLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTR 362 Query: 355 GLDILAACGQLK 366 G DI AACGQLK Sbjct: 363 GDDIDAACGQLK 374 >gi|325919431|ref|ZP_08181457.1| 23S rRNA m(2)A-2503 methyltransferase [Xanthomonas gardneri ATCC 19865] gi|325550097|gb|EGD20925.1| 23S rRNA m(2)A-2503 methyltransferase [Xanthomonas gardneri ATCC 19865] Length = 401 Score = 310 bits (794), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 164/373 (43%), Positives = 227/373 (60%), Gaps = 28/373 (7%) Query: 4 LKKESLIGMMREELEEALLK-IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 L+K++L+ + RE LE +G R R Q+ KWI+ R + DF M+D+ + +R Sbjct: 20 LRKQNLLDLDREGLERFFADTLG----EARYRAHQVMKWIHHRYVTDFDQMTDLGKALRA 75 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L+QH ++ P +V +K S DGT KWLL A G IETVYIP+K RGTLCVSSQV Sbjct: 76 KLHQHAEVLVPTVVFDKPSTDGTHKWLL---AMGTDGKNAIETVYIPDKGRGTLCVSSQV 132 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C+FC T TQ RNLT EI+ QV +A LG+ +P R+++N+ Sbjct: 133 GCGLNCTFCSTATQGFNRNLTTAEIVGQVWVAARHLGN-----------VPHQQRRLTNV 181 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+S Sbjct: 182 VMMGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVS 241 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDAC-RHYPGLSNARRITFEYVMLKGINDSPRDALN 301 LHA ++ LR LVP+N+KYP+ L+++C R+ G +TFEY ++KGIND P A Sbjct: 242 LHAANDALRESLVPLNKKYPIAELMESCARYLRGNKKRDSVTFEYTLMKGINDQPEHARQ 301 Query: 302 LIKILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353 L ++++ K+NLIPFNP+PG Y S + +I F + + + + +R Sbjct: 302 LARLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRT 361 Query: 354 RGLDILAACGQLK 366 RG DI AACGQLK Sbjct: 362 RGDDIDAACGQLK 374 >gi|156502452|ref|YP_001428517.1| radical SAM enzyme, Cfr family protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|205829764|sp|A7NC58|RLMN_FRATF RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|156253055|gb|ABU61561.1| radical SAM enzyme, Cfr family protein [Francisella tularensis subsp. holarctica FTNF002-00] Length = 370 Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 158/362 (43%), Positives = 227/362 (62%), Gaps = 22/362 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ ++ +E+ + IG + H R Q++KWI+ +G+ DF M+D+ + +RH L Sbjct: 5 KVNLLGLNQKAIEDFFISIGKKKFHAR----QVFKWIHKKGVIDFDAMTDLGKNLRHKLK 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I P++V K S DGT KWL+ +GG +ETV+IPE+ RGTLCVSSQ+GC+ Sbjct: 61 DKAQITIPKVVFSKASKDGTHKWLID-----VGGSA-VETVFIPEEGRGTLCVSSQIGCT 114 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q RNL+A E++ Q+ +A L G D ++NIVMM Sbjct: 115 LNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFT----------VTNIVMM 164 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+NV ++ I D + S+R++TLSTSG VP I + E+ GV LA+SLH Sbjct: 165 GMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHT 224 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ LRN +VPIN+KY ++ L++AC+ Y + ITFEY +++ +ND+ DA L+ + Sbjct: 225 PNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEVNDNLSDAEELVAL 284 Query: 306 LKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 LK +PAKINLIPFNP+PG Y I F E ++ +G+ + +R RG DI AACG Sbjct: 285 LKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAACG 344 Query: 364 QL 365 QL Sbjct: 345 QL 346 >gi|89256367|ref|YP_513729.1| radical SAM superfamily protein [Francisella tularensis subsp. holarctica LVS] gi|115314812|ref|YP_763535.1| Fe-S-cluster oxidoreductase [Francisella tularensis subsp. holarctica OSU18] gi|167010712|ref|ZP_02275643.1| probable Fe-S-cluster oxidoreductase [Francisella tularensis subsp. holarctica FSC200] gi|254367703|ref|ZP_04983724.1| radical SAM superfamily protein; probable Fe-S-cluster oxidoreductase [Francisella tularensis subsp. holarctica 257] gi|122325172|sp|Q0BLY6|RLMN_FRATO RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|122999743|sp|Q2A3H3|RLMN_FRATH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|89144198|emb|CAJ79467.1| Radical SAM superfamily protein [Francisella tularensis subsp. holarctica LVS] gi|115129711|gb|ABI82898.1| probable Fe-S-cluster oxidoreductase [Francisella tularensis subsp. holarctica OSU18] gi|134253514|gb|EBA52608.1| radical SAM superfamily protein; probable Fe-S-cluster oxidoreductase [Francisella tularensis subsp. holarctica 257] Length = 370 Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 158/362 (43%), Positives = 227/362 (62%), Gaps = 22/362 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ ++ +E+ + IG + H R Q++KWI+ +G+ DF M+D+ + +RH L Sbjct: 5 KVNLLGLNQKAIEDFFISIGKKKFHAR----QVFKWIHKKGVIDFDAMTDLGKNLRHKLK 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I P++V K S DGT KWL+ +GG +ETV+IPE+ RGTLCVSSQ+GC+ Sbjct: 61 DKAQITIPKVVFSKASKDGTHKWLID-----VGGSA-VETVFIPEEGRGTLCVSSQIGCT 114 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q RNL+A E++ Q+ +A L G D ++NIVMM Sbjct: 115 LNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFT----------VTNIVMM 164 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+NV ++ I D + S+R++TLSTSG VP I + E+ GV LA+SLH Sbjct: 165 GMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHT 224 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ LRN +VPIN+KY ++ L++AC+ Y + ITFEY +++ +ND+ DA L+ + Sbjct: 225 PNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEVNDNLSDAEELVAL 284 Query: 306 LKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 LK +PAKINLIPFNP+PG Y I F E ++ +G+ + +R RG DI AACG Sbjct: 285 LKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAACG 344 Query: 364 QL 365 QL Sbjct: 345 QL 346 >gi|270156690|ref|ZP_06185347.1| Cfr family radical SAM enzyme [Legionella longbeachae D-4968] gi|289164863|ref|YP_003455001.1| Fe-S containing enzyme [Legionella longbeachae NSW150] gi|269988715|gb|EEZ94969.1| Cfr family radical SAM enzyme [Legionella longbeachae D-4968] gi|288858036|emb|CBJ11896.1| putative Fe-S containing enzyme [Legionella longbeachae NSW150] Length = 376 Score = 310 bits (793), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 164/333 (49%), Positives = 212/333 (63%), Gaps = 17/333 (5%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93 R QI +WI+ G+ DF M+++ + +R L+Q I PEI+ + S DGT KWLL+ Sbjct: 29 RAQQIIQWIHQAGLTDFAKMTNLGKTLREKLSQLSCIKLPEIIACQKSNDGTHKWLLKLE 88 Query: 94 -ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 CI ETV+IPE +RGTLCVSSQVGC+L CSFC T Q RNLT EI+ QV Sbjct: 89 CGNCI------ETVFIPEANRGTLCVSSQVGCALNCSFCSTAKQGFNRNLTTAEIIGQVW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 LA L G D ++++N+VMMGMGEPL NFDNV ++ I D Sbjct: 143 LAVRELSQSQGNHD----------KRVTNVVMMGMGEPLLNFDNVVSAMDIMMDDFAYGL 192 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 SKRR+TLSTSG +P++ R+ E V LA+SLHA +++LRN LVPIN+KYPL L+ C+ Sbjct: 193 SKRRVTLSTSGVLPDLERLREVSPVALAVSLHAPNDELRNELVPINKKYPLAQLMALCKI 252 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y R++TFEYVMLKG+ND P A+ LIK+L+ IPAK+NLIPFNP+P +Y S Q+ Sbjct: 253 YFKNEPRRKVTFEYVMLKGVNDQPEHAIQLIKLLRNIPAKVNLIPFNPFPMTQYERSSQE 312 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F E + G ++ R RG DI AACGQL Sbjct: 313 TIDAFREKLMAHGINTITRKTRGDDIDAACGQL 345 >gi|294625018|ref|ZP_06703668.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600693|gb|EFF44780.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 405 Score = 310 bits (793), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 164/372 (44%), Positives = 226/372 (60%), Gaps = 28/372 (7%) Query: 5 KKESLIGMMREELEEALLK-IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +K++L+ + RE LE +G R R Q+ KWI+ R + DF M+D+ + +R Sbjct: 25 RKQNLLDLDREGLERFFADTLG----EARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAK 80 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L+QH ++ P +V +K S DGT KWLL A G IETVYIP+K RGTLCVSSQVG Sbjct: 81 LHQHAEVLVPNVVFDKPSADGTHKWLL---AMGTDGKNAIETVYIPDKGRGTLCVSSQVG 137 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C L C+FC T TQ RNLT EI+ QV +A LG+ +P R+++N+V Sbjct: 138 CGLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVV 186 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SL Sbjct: 187 MMGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSL 246 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNL 302 HA ++ LR LVP+N+KYP+ L+++C Y S R +TFEY ++KGIND P A L Sbjct: 247 HAANDALRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQL 306 Query: 303 IKILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 ++++ K+NLIPFNP+PG Y S + +I F + + + + +R R Sbjct: 307 ARLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTR 366 Query: 355 GLDILAACGQLK 366 G DI AACGQLK Sbjct: 367 GDDIDAACGQLK 378 >gi|78047623|ref|YP_363798.1| radical SAM superfamily protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036053|emb|CAJ23744.1| radical SAM superfamily protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 405 Score = 310 bits (793), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 164/372 (44%), Positives = 226/372 (60%), Gaps = 28/372 (7%) Query: 5 KKESLIGMMREELEEALLK-IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +K++L+ + RE LE +G R R Q+ KWI+ R + DF M+D+ + +R Sbjct: 25 RKQNLLDLDREGLERFFADTLG----EARYRAHQVMKWIHHRYVTDFDQMTDLCKALRAK 80 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L+QH ++ P +V +K S DGT KWLL A G IETVYIP+K RGTLCVSSQVG Sbjct: 81 LHQHAEVLVPNVVFDKPSADGTHKWLLAMGA---DGKNAIETVYIPDKGRGTLCVSSQVG 137 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C L C+FC T TQ RNLT EI+ QV +A LG+ +P R+++N+V Sbjct: 138 CGLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVV 186 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SL Sbjct: 187 MMGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSL 246 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNL 302 HA ++ LR LVP+N+KYP+ L+++C Y S R +TFEY ++KGIND P A L Sbjct: 247 HAANDTLRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQL 306 Query: 303 IKILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 ++++ K+NLIPFNP+PG Y S + +I F + + + + +R R Sbjct: 307 ARLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTR 366 Query: 355 GLDILAACGQLK 366 G DI AACGQLK Sbjct: 367 GDDIDAACGQLK 378 >gi|261401249|ref|ZP_05987374.1| radical SAM enzyme, Cfr family [Neisseria lactamica ATCC 23970] gi|269208732|gb|EEZ75187.1| radical SAM enzyme, Cfr family [Neisseria lactamica ATCC 23970] Length = 364 Score = 310 bits (793), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 156/333 (46%), Positives = 217/333 (65%), Gaps = 16/333 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ G ++F M+D+++ +RH LN+ +I P+++ + S DGTRKWLL Sbjct: 25 FRAKQVMRWIHQSGAQNFDEMTDLAKSLRHKLNEQANIGIPKLMMSQESSDGTRKWLLD- 83 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE RGTLC+SSQVGC+L C+FC TG Q RNLTA EI+ Q+ Sbjct: 84 ----VGTGNGVETVFIPESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLW 139 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A +G V P R ISN+VMMGMGEP+ NFDNV SLSI D G Sbjct: 140 WANKAMG-----------VTPKNERVISNVVMMGMGEPMANFDNVVTSLSIMLDDHGYGL 188 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+T+STSG VP + R+ + + V LA+SLHA ++++R+ +VP+N+KYPL+ L+ ACR Sbjct: 189 SRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRDQIVPLNKKYPLKELMAACRR 248 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + ITFEYVML GIND + A LI ++K +P K NLIPFNP+P Y S ++ Sbjct: 249 YLVKAPRDFITFEYVMLDGINDKAQHAHELINLVKDVPCKFNLIPFNPFPNSGYERSSKE 308 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +I F + ++++G+ +R RG DI AACGQL Sbjct: 309 NIRVFKDILQQAGFVVTVRKTRGDDIDAACGQL 341 >gi|205829948|sp|Q3BTW5|RLMN_XANC5 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase Length = 401 Score = 310 bits (793), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 164/372 (44%), Positives = 226/372 (60%), Gaps = 28/372 (7%) Query: 5 KKESLIGMMREELEEALLK-IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +K++L+ + RE LE +G R R Q+ KWI+ R + DF M+D+ + +R Sbjct: 21 RKQNLLDLDREGLERFFADTLG----EARYRAHQVMKWIHHRYVTDFDQMTDLCKALRAK 76 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L+QH ++ P +V +K S DGT KWLL A G IETVYIP+K RGTLCVSSQVG Sbjct: 77 LHQHAEVLVPNVVFDKPSADGTHKWLLAMGA---DGKNAIETVYIPDKGRGTLCVSSQVG 133 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C L C+FC T TQ RNLT EI+ QV +A LG+ +P R+++N+V Sbjct: 134 CGLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVV 182 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SL Sbjct: 183 MMGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSL 242 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNL 302 HA ++ LR LVP+N+KYP+ L+++C Y S R +TFEY ++KGIND P A L Sbjct: 243 HAANDTLRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQL 302 Query: 303 IKILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 ++++ K+NLIPFNP+PG Y S + +I F + + + + +R R Sbjct: 303 ARLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTR 362 Query: 355 GLDILAACGQLK 366 G DI AACGQLK Sbjct: 363 GDDIDAACGQLK 374 >gi|167627914|ref|YP_001678414.1| radical SAM superfamily protein [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|205829762|sp|B0U083|RLMN_FRAP2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|167597915|gb|ABZ87913.1| radical SAM superfamily protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 370 Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 158/362 (43%), Positives = 232/362 (64%), Gaps = 22/362 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ ++ +E+ + IG + H R Q++KWI+ +G+ DF M+D+ + +R+ L Sbjct: 5 KINLLGLNQKAIEDFFISIGEKKFHAR----QVFKWIHKKGVIDFDSMTDLGKNLRNKLK 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++ I+ P++V K S DGT KWL+ +GG +ETV+IPE+ RGTLCVSSQVGC+ Sbjct: 61 ENAEIVIPKVVFNKASKDGTHKWLID-----VGGSA-VETVFIPEEGRGTLCVSSQVGCT 114 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q RNL++ E++ Q+ +A L G D ++NIVMM Sbjct: 115 LNCSFCSTGKQGFNRNLSSAEVISQLWIAARTLSKNNGEHDFS----------VTNIVMM 164 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+NV ++ I D + S+R++TLSTSG VP I + E+ GV LA+SLHA Sbjct: 165 GMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHA 224 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ LRN +VPIN+KY ++ L++AC+ Y + ITFEY +++ +ND+ DA LI++ Sbjct: 225 PTDSLRNEIVPINKKYNIDELLEACKLYAEKGPHKHITFEYTLMEEVNDNLSDAEQLIEL 284 Query: 306 LKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 L+ +PAKINLIPFNP+PG Y I F E ++ +G+ + +R RG DI AACG Sbjct: 285 LRSREVPAKINLIPFNPYPGTPYRKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAACG 344 Query: 364 QL 365 QL Sbjct: 345 QL 346 >gi|90021078|ref|YP_526905.1| Crp/FNR family transcriptional regulator [Saccharophagus degradans 2-40] gi|123090598|sp|Q21KT6|RLMN_SACD2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|89950678|gb|ABD80693.1| transcriptional regulator, Crp/Fnr family [Saccharophagus degradans 2-40] Length = 398 Score = 309 bits (792), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 170/364 (46%), Positives = 227/364 (62%), Gaps = 25/364 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ + +LE +G R R +Q+ KWI+ G+ DF+ M++IS+ +R L+ Sbjct: 11 KVNLMGLSQAKLEAFFDSLG----EKRFRATQVLKWIHQMGVTDFEQMTNISKPLRDKLS 66 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 Q + PE+V++ S DGTRK+L+R +GG +ETVYIP+ RGTLCVSSQVGCS Sbjct: 67 QVAEAVAPEVVNQWDSSDGTRKFLIR-----VGGGNAVETVYIPDGDRGTLCVSSQVGCS 121 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG--RKISNIV 183 L CSFC TG Q R+LTA EI+ QV A F VG RKI+N+V Sbjct: 122 LDCSFCATGKQGFNRDLTAAEIIGQVWQAAKSFNQF------------GVGAQRKITNVV 169 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL NFDNV S+++ SKRR+TLSTSG VP + ++GE LAISL Sbjct: 170 MMGMGEPLLNFDNVVDSMNLMMHDNCYGLSKRRVTLSTSGVVPALDKLGEYTDACLAISL 229 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARR-ITFEYVMLKGINDSPRDALN 301 HA +N LRN LVPIN+KYP+EML+ + + Y GL + RR +T EY ++ +ND P A Sbjct: 230 HAPNNALRNELVPINKKYPIEMLLASAKRYIDGLPDVRRKMTIEYTLIDQVNDRPEHAHE 289 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++LK IP KINLIPFNP+ Y + F + + +GY++ +RT RG DI AA Sbjct: 290 LAELLKDIPVKINLIPFNPFNLSNYKRVSNNALRRFQQILIDAGYTTTVRTTRGDDIDAA 349 Query: 362 CGQL 365 CGQL Sbjct: 350 CGQL 353 >gi|294666609|ref|ZP_06731848.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603629|gb|EFF47041.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 405 Score = 309 bits (792), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 164/372 (44%), Positives = 226/372 (60%), Gaps = 28/372 (7%) Query: 5 KKESLIGMMREELEEALLK-IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +K++L+ + RE LE +G R R Q+ KWI+ R + DF M+D+ + +R Sbjct: 25 RKQNLLDLDREGLERFFADTLG----EARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAK 80 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L+QH ++ P +V +K S DGT KWLL A G IETVYIP+K RGTLCVSSQVG Sbjct: 81 LHQHAEVLVPNVVFDKPSSDGTHKWLL---AMGTDGKNAIETVYIPDKGRGTLCVSSQVG 137 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C L C+FC T TQ RNLT EI+ QV +A LG+ +P R+++N+V Sbjct: 138 CGLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVV 186 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SL Sbjct: 187 MMGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSL 246 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNL 302 HA ++ LR LVP+N+KYP+ L+++C Y S R +TFEY ++KGIND P A L Sbjct: 247 HAANDALRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQL 306 Query: 303 IKILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 ++++ K+NLIPFNP+PG Y S + +I F + + + + +R R Sbjct: 307 ARLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTR 366 Query: 355 GLDILAACGQLK 366 G DI AACGQLK Sbjct: 367 GDDIDAACGQLK 378 >gi|332184101|gb|AEE26355.1| radical SAM superfamily protein [Francisella cf. novicida 3523] Length = 370 Score = 309 bits (792), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 160/362 (44%), Positives = 228/362 (62%), Gaps = 22/362 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ ++ +E+ + IG + H R Q++KWI+ +G+ DF M+D+ + +R+ L Sbjct: 5 KVNLLGLNQKAIEDFFISIGEKKFHAR----QVFKWIHKKGVIDFDAMTDLGKNLRNKLK 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I P++V K S DGT KWL+ +GG +ETV+IPE+ RGTLCVSSQVGC+ Sbjct: 61 EKTEITIPKVVFSKASKDGTHKWLID-----VGGSA-VETVFIPEEGRGTLCVSSQVGCT 114 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q RNL+A E++ Q+ +A L G D ++NIVMM Sbjct: 115 LNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDF----------TVTNIVMM 164 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+NV ++ I D + S+R++TLSTSG VP I + E+ GV LA+SLHA Sbjct: 165 GMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHA 224 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ LRN +VPIN+KY ++ L+ AC+ Y + ITFEY +++ IND+ DA L+ + Sbjct: 225 PNDMLRNEIVPINKKYNIDELLKACKLYAEKGPHKHITFEYTLMEEINDNLSDAEELVAL 284 Query: 306 LKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 LK +PAKINLIPFNP+PG Y I F E ++ +G+ + +R RG DI AACG Sbjct: 285 LKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAACG 344 Query: 364 QL 365 QL Sbjct: 345 QL 346 >gi|188991676|ref|YP_001903686.1| Radical SAM superfamily protein, probable [Xanthomonas campestris pv. campestris str. B100] gi|205829934|sp|B0RT51|RLMN_XANCB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|167733436|emb|CAP51637.1| Radical SAM superfamily protein, probable [Xanthomonas campestris pv. campestris] Length = 401 Score = 309 bits (791), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 163/373 (43%), Positives = 226/373 (60%), Gaps = 28/373 (7%) Query: 4 LKKESLIGMMREELEEALLK-IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 + K++L+ + RE LE +G R R Q+ KWI+ R + DF M+D+ + +R Sbjct: 20 VHKQNLLDLDREGLEHFFADTLG----EARYRAHQMMKWIHHRYVTDFDQMTDLGKALRA 75 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L+QH ++ P +V +K S DGT KWLL A G IETVYIP+K RGTLCVSSQV Sbjct: 76 KLHQHAEVLVPNVVFDKPSTDGTHKWLL---AMGTDGKNAIETVYIPDKGRGTLCVSSQV 132 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C+FC T TQ RNLT EI+ QV +A LG+ +P R+++N+ Sbjct: 133 GCGLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNV 181 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+S Sbjct: 182 VMMGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLATESDVSLAVS 241 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDAC-RHYPGLSNARRITFEYVMLKGINDSPRDALN 301 LHA ++ LR LVP+N+KYP+ L+++C R+ G +TFEY ++KGIND P A Sbjct: 242 LHAANDALRESLVPLNKKYPIAELMESCARYLRGNKKRDSVTFEYTLMKGINDQPEHARQ 301 Query: 302 LIKILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353 L ++++ K+NLIPFNP+PG Y S + +I F + + + + +R Sbjct: 302 LARLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRT 361 Query: 354 RGLDILAACGQLK 366 RG DI AACGQLK Sbjct: 362 RGDDIDAACGQLK 374 >gi|289670467|ref|ZP_06491542.1| hypothetical protein XcampmN_18763 [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 401 Score = 309 bits (791), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 164/372 (44%), Positives = 226/372 (60%), Gaps = 28/372 (7%) Query: 5 KKESLIGMMREELEEALLK-IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +K++L+ + RE LE +G R R Q+ KWI+ R + DF M+D+ + +R Sbjct: 21 RKQNLLDLDREGLERFFADTLG----EARYRAHQVMKWIHRRYVTDFDQMTDLGKPLRAK 76 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L+QH ++ P +V +K S DGT KWLL A G IETVYIP+K RGTLCVSSQVG Sbjct: 77 LHQHAEVLVPNVVFDKPSTDGTHKWLL---AMGTDGKNAIETVYIPDKGRGTLCVSSQVG 133 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C L C+FC T TQ RNLT EI+ QV +A LG+ +P R+++N+V Sbjct: 134 CGLNCTFCSTATQGFNRNLTTAEIVGQVWVAARHLGN-----------VPHQQRRLTNVV 182 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SL Sbjct: 183 MMGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSL 242 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNL 302 HA ++ LR LVP+N+KYP+ L+++C Y S R +TFEY ++KGIND P A L Sbjct: 243 HAANDALRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQL 302 Query: 303 IKILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 ++++ K+NLIPFNP+PG Y S + +I F + + + + +R R Sbjct: 303 ARLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTR 362 Query: 355 GLDILAACGQLK 366 G DI AACGQLK Sbjct: 363 GDDIDAACGQLK 374 >gi|289666007|ref|ZP_06487588.1| hypothetical protein XcampvN_23775 [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 401 Score = 309 bits (791), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 164/372 (44%), Positives = 226/372 (60%), Gaps = 28/372 (7%) Query: 5 KKESLIGMMREELEEALLK-IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +K++L+ + RE LE +G R R Q+ KWI+ R + DF M+D+ + +R Sbjct: 21 RKQNLLDLDREGLERFFADTLG----EARYRAHQVMKWIHHRYVTDFDQMTDLGKPLRAK 76 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L+QH ++ P +V +K S DGT KWLL A G IETVYIP+K RGTLCVSSQVG Sbjct: 77 LHQHAEVLVPNVVFDKPSTDGTHKWLL---AMGTDGKNAIETVYIPDKGRGTLCVSSQVG 133 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C L C+FC T TQ RNLT EI+ QV +A LG+ +P R+++N+V Sbjct: 134 CGLNCTFCSTATQGFNRNLTTAEIVGQVWVAARHLGN-----------VPHQQRRLTNVV 182 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SL Sbjct: 183 MMGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSL 242 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNL 302 HA ++ LR LVP+N+KYP+ L+++C Y S R +TFEY ++KGIND P A L Sbjct: 243 HAANDALRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQL 302 Query: 303 IKILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 ++++ K+NLIPFNP+PG Y S + +I F + + + + +R R Sbjct: 303 ARLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTR 362 Query: 355 GLDILAACGQLK 366 G DI AACGQLK Sbjct: 363 GDDIDAACGQLK 374 >gi|134301956|ref|YP_001121925.1| radical SAM protein [Francisella tularensis subsp. tularensis WY96-3418] gi|205829767|sp|A4IY03|RLMN_FRATW RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|134049733|gb|ABO46804.1| radical SAM enzyme, Cfr family [Francisella tularensis subsp. tularensis WY96-3418] Length = 370 Score = 309 bits (791), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 159/362 (43%), Positives = 228/362 (62%), Gaps = 22/362 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ ++ +E+ + IG + H R Q++KWI+ +G+ DF M+D+ + +RH L Sbjct: 5 KVNLLGLNQKAIEDFFISIGEKKFHAR----QVFKWIHKKGVIDFDAMTDLGKNLRHKLK 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I P++V K S DGT KWL+ +GG +ETV+I E+ RGTLCVSSQVGC+ Sbjct: 61 EKAQITIPKVVFSKASKDGTHKWLID-----VGGSA-VETVFILEEGRGTLCVSSQVGCT 114 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q RNL+A E++ Q+ +A L G D ++NIVMM Sbjct: 115 LNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDF----------TVTNIVMM 164 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+NV ++ I D + S+R++TLSTSG VP I + E+ GV LA+SLHA Sbjct: 165 GMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHA 224 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ LRN +VPIN+KY ++ L++AC+ Y + ITFEY +++ +ND+ DA L+ + Sbjct: 225 PNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEVNDNLSDAEELVAL 284 Query: 306 LKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 LK +PAKINLIPFNP+PG Y I F E ++ +G+ + +R RG DI AACG Sbjct: 285 LKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAACG 344 Query: 364 QL 365 QL Sbjct: 345 QL 346 >gi|161870181|ref|YP_001599351.1| hypothetical protein NMCC_1221 [Neisseria meningitidis 053442] gi|205829821|sp|A9LZN6|RLMN_NEIM0 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|161595734|gb|ABX73394.1| conserved hypothetical protein [Neisseria meningitidis 053442] Length = 364 Score = 309 bits (791), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 155/333 (46%), Positives = 217/333 (65%), Gaps = 16/333 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +W++ G ++F M+D+++ +RH LN+ SI P+++ + S DGTRKWLL Sbjct: 25 FRAKQVMRWMHQSGAQNFNEMTDLAKSLRHKLNEQASIEIPKLMMSQESSDGTRKWLLD- 83 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE RGTLC+SSQVGC+L C+FC TG Q RNLTA EI+ Q+ Sbjct: 84 ----VGTGNGVETVFIPESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLW 139 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A +G V P R ISN+VMMGMGEP+ NFDNV +LSI D G Sbjct: 140 WANKAMG-----------VTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGL 188 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+T+STSG VP + R+ + + V LA+SLHA ++++RN +VP+N+KYPL+ L+ AC+ Sbjct: 189 SRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACQR 248 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + ITFEYVML GIND + A LI+++K +P K NLIPFNP+P Y S + Sbjct: 249 YLVKAPRDFITFEYVMLDGINDRAQHARELIELVKDVPCKFNLIPFNPFPNSGYERSSNE 308 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +I F + ++++G+ +R RG DI AACGQL Sbjct: 309 NIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341 >gi|241668466|ref|ZP_04756044.1| radical SAM superfamily protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877000|ref|ZP_05249710.1| radical SAM family protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843021|gb|EET21435.1| radical SAM family protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 370 Score = 309 bits (791), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 157/362 (43%), Positives = 232/362 (64%), Gaps = 22/362 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ ++ +E+ + IG + H R Q++KWI+ +G+ DF M+D+ + +R+ L Sbjct: 5 KINLLGLNQKAIEDFFISIGEKKFHAR----QVFKWIHKKGVIDFDSMTDLGKNLRNKLR 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++ I+ P++V K S DGT KWL+ +GG +ETV+IPE+ RGTLCVSSQVGC+ Sbjct: 61 ENAEIVIPKVVFNKASKDGTHKWLID-----VGGSA-VETVFIPEEGRGTLCVSSQVGCT 114 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q RNL++ E++ Q+ +A L G D ++NIVMM Sbjct: 115 LNCSFCSTGKQGFNRNLSSAEVISQLWIAARTLSKNNGEHDFS----------VTNIVMM 164 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+NV ++ I D + S+R++TLSTSG VP I + E+ GV LA+SLHA Sbjct: 165 GMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHA 224 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ LRN +VPIN+KY ++ L++AC+ Y + ITFEY +++ +ND+ DA L+++ Sbjct: 225 PTDSLRNEIVPINKKYNIDELLEACKLYAEKGPHKHITFEYTLMEEVNDNLSDAEQLVEL 284 Query: 306 LKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 L+ +PAKINLIPFNP+PG Y I F E ++ +G+ + +R RG DI AACG Sbjct: 285 LRSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAACG 344 Query: 364 QL 365 QL Sbjct: 345 QL 346 >gi|313668447|ref|YP_004048731.1| hypothetical protein NLA_11430 [Neisseria lactamica ST-640] gi|313005909|emb|CBN87365.1| conserved hypothetical protein [Neisseria lactamica 020-06] Length = 364 Score = 308 bits (790), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 155/333 (46%), Positives = 217/333 (65%), Gaps = 16/333 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ G ++F M+D+++ +RH LN+ +I P+++ + S DGTRKWLL Sbjct: 25 FRAKQVMRWIHQSGAQNFDEMTDLAKSLRHKLNEQANIGIPKLMMSQESSDGTRKWLLD- 83 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE RGTLC+SSQVGC+L C+FC TG Q RNLTA EI+ Q+ Sbjct: 84 ----VGTGNGVETVFIPESERGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLW 139 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A +G V P R ISN+VMMGMGEP+ NFDNV +LSI D G Sbjct: 140 WANKAMG-----------VTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGL 188 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+T+STSG VP + R+ + + V LA+SLHA ++++R+ +VP+N+KYPL+ L+ ACR Sbjct: 189 SRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRDQIVPLNKKYPLKELMAACRR 248 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + ITFEYVML GIND + A LI ++K +P K NLIPFNP+P Y S ++ Sbjct: 249 YLVKAPRDFITFEYVMLDGINDKAQHAHELINLVKDVPCKFNLIPFNPFPNSGYERSSKE 308 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +I F + ++++G+ +R RG DI AACGQL Sbjct: 309 NIRVFKDILQQAGFVVTVRKTRGDDIDAACGQL 341 >gi|21231430|ref|NP_637347.1| hypothetical protein XCC1982 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768516|ref|YP_243278.1| hypothetical protein XC_2202 [Xanthomonas campestris pv. campestris str. 8004] gi|81305512|sp|Q4UUL5|RLMN_XANC8 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|81794005|sp|Q8P984|RLMN_XANCP RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|21113100|gb|AAM41271.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573848|gb|AAY49258.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] Length = 401 Score = 308 bits (790), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 163/373 (43%), Positives = 226/373 (60%), Gaps = 28/373 (7%) Query: 4 LKKESLIGMMREELEEALLK-IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 + K++L+ + RE LE +G R R Q+ KWI+ R + DF M+D+ + +R Sbjct: 20 VHKQNLLDLDREGLEHFFADTLG----EARYRAHQVMKWIHHRYVTDFDQMTDLGKALRA 75 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L+QH ++ P +V +K S DGT KWLL A G IETVYIP+K RGTLCVSSQV Sbjct: 76 KLHQHAEVLVPNVVFDKPSTDGTHKWLL---AMGTDGKNAIETVYIPDKGRGTLCVSSQV 132 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C+FC T TQ RNLT EI+ QV +A LG+ +P R+++N+ Sbjct: 133 GCGLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNV 181 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+S Sbjct: 182 VMMGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLATESDVSLAVS 241 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDAC-RHYPGLSNARRITFEYVMLKGINDSPRDALN 301 LHA ++ LR LVP+N+KYP+ L+++C R+ G +TFEY ++KGIND P A Sbjct: 242 LHAANDVLRESLVPLNKKYPIAELMESCARYLRGNKKRDSVTFEYTLMKGINDQPEHARQ 301 Query: 302 LIKILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353 L ++++ K+NLIPFNP+PG Y S + +I F + + + + +R Sbjct: 302 LARLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRT 361 Query: 354 RGLDILAACGQLK 366 RG DI AACGQLK Sbjct: 362 RGDDIDAACGQLK 374 >gi|255021262|ref|ZP_05293311.1| Ribosomal RNA large subunit methyltransferase N [Acidithiobacillus caldus ATCC 51756] gi|254969273|gb|EET26786.1| Ribosomal RNA large subunit methyltransferase N [Acidithiobacillus caldus ATCC 51756] Length = 357 Score = 308 bits (790), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 170/357 (47%), Positives = 217/357 (60%), Gaps = 26/357 (7%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+G+ R L L + G P R SQI +W++ R + DF MS+IS+ +R L Sbjct: 4 LLGLDRAGLVALLQEWGEPP----FRASQILQWLHQRQVDDFAAMSNISKALRARLMAET 59 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 PE++ ++++ D TRKWLLR P IETV+IPE+ RGTLC+SSQVGCSL C Sbjct: 60 RWDEPEVIADQLARDETRKWLLRLP-----DGNAIETVFIPEEDRGTLCISSQVGCSLAC 114 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 SFC TG Q L RNL++ EI+ QV +AR LG I+N+V MGMG Sbjct: 115 SFCATGAQGLNRNLSSHEIVAQVRVARRHLG----------------LDAITNVVFMGMG 158 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN 248 EPL N V + + D S RR+T+ST+G +P + ++G E V LAISLHA N Sbjct: 159 EPLLNLKQVIPVIRLLLDDFAYGLSSRRVTVSTAGVLPGLEQLGRETPVNLAISLHASRN 218 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 DLR+ LVPINR YPL L+ ACR YP L RRITFEYVML G+NDS DA L+++L+G Sbjct: 219 DLRDELVPINRHYPLAQLMAACRSYP-LPPRRRITFEYVMLDGVNDSDADARALVRLLRG 277 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +PA +NLIPFNP+PG Y S I F E + +G + R PRG DI AACGQL Sbjct: 278 LPALVNLIPFNPFPGSPYRRSSLARIDAFREIVLSAGIMTVTRRPRGDDIAAACGQL 334 >gi|53802993|ref|YP_115280.1| hypothetical protein MCA2887 [Methylococcus capsulatus str. Bath] gi|81680833|sp|Q603C0|RLMN_METCA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|53756754|gb|AAU91045.1| conserved hypothetical protein TIGR00048 [Methylococcus capsulatus str. Bath] Length = 366 Score = 308 bits (790), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 160/358 (44%), Positives = 221/358 (61%), Gaps = 24/358 (6%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L+ + RE +E +++G R SQ+ +WI+ RG+ DF M+++S+ +R L Sbjct: 15 NLLDLDREGMEAFFVRLG----EKPFRASQLLQWIHQRGVTDFGLMTNLSKTLRSRLEAV 70 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 I PE+V E+ S DGTRKW+L+ + +ETV IP++ R TLCVSSQVGCSL Sbjct: 71 SEIRPPELVLEQRSADGTRKWVLQ-----VDAVNRVETVLIPDEGRNTLCVSSQVGCSLE 125 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 CSFC T Q RNLT EI+ Q+ +A+ L + ++ISN+V+MGM Sbjct: 126 CSFCSTARQGFNRNLTTAEIIGQLWVAQHRLDE---------------EQRISNVVLMGM 170 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL NF NV + + D SKRR+TLSTSG VP + R+ E + LA+SLHA Sbjct: 171 GEPLLNFGNVVAATRLMMDDFAYGLSKRRVTLSTSGIVPALDRLAEVSDISLAVSLHAPD 230 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 + LRN LVPINRKYP+ L+ AC+ Y G N R++TFEYVML G+ND P A L+++L Sbjct: 231 DTLRNELVPINRKYPIRELLAACKRYVGTENRRKVTFEYVMLDGVNDRPEHARALVRLLS 290 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +P+K+NLIPFNP+P Y CS + I F++ ++ +G + R RG DI AACGQL Sbjct: 291 HVPSKVNLIPFNPFPNSAYRCSHPETIARFAQTLQDAGLITTTRKTRGRDIDAACGQL 348 >gi|319786998|ref|YP_004146473.1| radical SAM enzyme, Cfr family [Pseudoxanthomonas suwonensis 11-1] gi|317465510|gb|ADV27242.1| radical SAM enzyme, Cfr family [Pseudoxanthomonas suwonensis 11-1] Length = 418 Score = 308 bits (790), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 163/370 (44%), Positives = 224/370 (60%), Gaps = 26/370 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K++L+ + RE LE + +R+ R Q+ KWI+ R + DF M+D+ + +R L+ Sbjct: 35 KQNLLELDREGLERFFEETLGEKRY---RAHQVMKWIHHRYVTDFDQMTDLGKALRAKLH 91 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 H ++ P +V +K S DGT KWLL A G IETVYIP+K RGTLCVSSQVGC Sbjct: 92 AHAEVVVPNVVFDKPSADGTHKWLLAMGA---DGKNAIETVYIPDKGRGTLCVSSQVGCG 148 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC T TQ RNLT EI+ QV +A LG+ +P R+++N+VMM Sbjct: 149 LNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVVMM 197 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SLHA Sbjct: 198 GMGEPLMNFDNVVRAMSVMRDDLGYGLANKRVTLSTSGLVPQIDRLSVESDVSLAVSLHA 257 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALNLIK 304 ++ LR LVP+NRKYP+ L+ +C Y + R +TFEY ++KG+ND P A L + Sbjct: 258 PNDALRETLVPLNRKYPIAELMASCARYLRANKKRESVTFEYTLMKGVNDQPEHARQLAR 317 Query: 305 ILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 +++ K+NLIPFNP+PG Y SD+ I F + + S + +R RG Sbjct: 318 LMRQFDNAVQARDSGKVNLIPFNPFPGTRYERSDEATIRAFQKILLDSQVLTMVRRTRGD 377 Query: 357 DILAACGQLK 366 DI AACGQLK Sbjct: 378 DIDAACGQLK 387 >gi|121635020|ref|YP_975265.1| hypothetical protein NMC1245 [Neisseria meningitidis FAM18] gi|254805109|ref|YP_003083330.1| hypothetical protein NMO_1149 [Neisseria meningitidis alpha14] gi|205829823|sp|A1KUD6|RLMN_NEIMF RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|120866726|emb|CAM10479.1| conserved hypothetical protein [Neisseria meningitidis FAM18] gi|254668651|emb|CBA06309.1| conserved hypothetical protein [Neisseria meningitidis alpha14] gi|325132491|gb|EGC55184.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M6190] gi|325138265|gb|EGC60834.1| radical SAM enzyme, Cfr family [Neisseria meningitidis ES14902] gi|325142519|gb|EGC64920.1| radical SAM enzyme, Cfr family [Neisseria meningitidis 961-5945] gi|325198460|gb|ADY93916.1| radical SAM enzyme, Cfr family [Neisseria meningitidis G2136] Length = 364 Score = 308 bits (788), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 154/333 (46%), Positives = 216/333 (64%), Gaps = 16/333 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +W++ G ++F M+D+++ +RH LN+ I P+++ + S DGTRKWLL Sbjct: 25 FRAKQVMRWMHQSGAQNFNEMTDLAKSLRHKLNEQAGIEIPKLMMSQKSSDGTRKWLLD- 83 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE RGTLC+SSQVGC+L C+FC TG Q RNLTA EI+ Q+ Sbjct: 84 ----VGTGNGVETVFIPESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLW 139 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A +G V P R ISN+VMMGMGEP+ NFDNV +LSI D G Sbjct: 140 WANKAMG-----------VTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGL 188 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+T+STSG VP + R+ + + V LA+SLHA ++++RN +VP+N+KYPL+ L+ AC+ Sbjct: 189 SRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACQR 248 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + ITFEYVML GIND + A LI+++K +P K NLIPFNP+P Y S + Sbjct: 249 YLVKAPRDFITFEYVMLDGINDKAQHARELIELVKDVPCKFNLIPFNPFPNSGYERSSNE 308 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +I F + ++++G+ +R RG DI AACGQL Sbjct: 309 NIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341 >gi|190574019|ref|YP_001971864.1| putative SAM methylase protein [Stenotrophomonas maltophilia K279a] gi|254524361|ref|ZP_05136416.1| radical SAM enzyme, Cfr family [Stenotrophomonas sp. SKA14] gi|205829904|sp|B2FNQ6|RLMN_STRMK RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|190011941|emb|CAQ45562.1| putative SAM methylase protein [Stenotrophomonas maltophilia K279a] gi|219721952|gb|EED40477.1| radical SAM enzyme, Cfr family [Stenotrophomonas sp. SKA14] Length = 401 Score = 307 bits (787), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 163/371 (43%), Positives = 228/371 (61%), Gaps = 28/371 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K++L+ + R LE+ +++ ++ R Q+ KWI+ R + DF M+D+ + +R L Sbjct: 22 KQNLLDLDRAGLEKFFVEVLGEKK---FRAHQVMKWIHHRYVTDFDEMTDLGKVLRAKLQ 78 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 H ++ P IV +K S DGT KWLL A + G IETVYIP+K+RGTLCVSSQVGC Sbjct: 79 AHAEVLVPNIVFDKPSADGTHKWLL---AMGVDGKNAIETVYIPDKTRGTLCVSSQVGCG 135 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC T TQ RNLT EI+ QV +A LG+ +P R+++N+VMM Sbjct: 136 LNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQMRRLTNVVMM 184 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SLHA Sbjct: 185 GMGEPLMNFDNVVRAMSVMRDDLGYGLANKRVTLSTSGLVPQIDRLSAESDVSLAVSLHA 244 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNLI 303 ++ LR LVP+N+KYP+ L+ +C Y +N RR +TFEY ++KGIND P A L Sbjct: 245 PNDALRETLVPLNKKYPIAELMASCARYL-RANKRRESVTFEYTLMKGINDKPEHARELA 303 Query: 304 KILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 ++++ K+NLIPFNP+PG Y S++ I F + + S + +R RG Sbjct: 304 RLMRQFDNAVQAKDSGKVNLIPFNPFPGTRYERSEEAHIRAFQKILLDSNVLTMVRRTRG 363 Query: 356 LDILAACGQLK 366 DI AACGQLK Sbjct: 364 DDIDAACGQLK 374 >gi|325205918|gb|ADZ01371.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M04-240196] Length = 364 Score = 307 bits (787), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 154/333 (46%), Positives = 216/333 (64%), Gaps = 16/333 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +W++ G ++F M+D+++ +RH LN+ I P+++ + S DGTRKWLL Sbjct: 25 FRAKQVMRWMHQSGAQNFDEMTDLAKSLRHKLNEQAGIEIPKLMMSQKSSDGTRKWLLD- 83 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE RGTLC+SSQVGC+L C+FC TG Q RNLTA EI+ Q+ Sbjct: 84 ----VGTGNGVETVFIPESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLW 139 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A +G V P R ISN+VMMGMGEP+ NFDNV +LSI D G Sbjct: 140 WANKAMG-----------VTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGL 188 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+T+STSG VP + R+ + + V LA+SLHA ++++RN +VP+N+KYPL+ L+ AC+ Sbjct: 189 SRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACQR 248 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + ITFEYVML GIND + A LI+++K +P K NLIPFNP+P Y S + Sbjct: 249 YLVKAPRDFITFEYVMLDGINDKAQHARELIELVKDVPCKFNLIPFNPFPNSGYERSSNE 308 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +I F + ++++G+ +R RG DI AACGQL Sbjct: 309 NIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341 >gi|256823058|ref|YP_003147021.1| radical SAM enzyme, Cfr family [Kangiella koreensis DSM 16069] gi|256796597|gb|ACV27253.1| radical SAM enzyme, Cfr family [Kangiella koreensis DSM 16069] Length = 374 Score = 307 bits (786), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 172/377 (45%), Positives = 229/377 (60%), Gaps = 24/377 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+E+ E +++G R Q+ KW++ G+ DF M++IS+ R L Sbjct: 4 EKTNLLNLTRDEMVEFFVELG----EKPFRAQQVMKWVHQFGVEDFDEMTNISKVCRERL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE++ + S DGT KW L+ P G +E V+IPE+ RGTLCVSSQVGC Sbjct: 60 KDVAEIKGPEVLSVQESKDGTVKWALKIP-----GGQAVEMVFIPERHRGTLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQV-LLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 +L C+FC TG Q RNLT EI+ QV L AR L G E R ++N+V Sbjct: 115 ALECTFCSTGYQGFNRNLTTAEIIGQVWLAARYLHGKHKSDE-----------RVVTNVV 163 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL NFD V KS+ + D + SKRR+TLSTSG VP + R+ +E+ V LAISL Sbjct: 164 MMGMGEPLANFDPVVKSMQLMMDDLAYGLSKRRVTLSTSGMVPQLDRLIDEVDVALAISL 223 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN-ARRITFEYVMLKGINDSPRDALNL 302 HA ++ LR++LVPIN+KYP++ L+ + Y SN AR+ T EYVMLK +ND+ + A L Sbjct: 224 HAPNDALRDVLVPINKKYPIKELMASVHRYLDRSNAARKATIEYVMLKDVNDTLQHAKEL 283 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIPFNP+P Y S Q+ I FS+ + + GY R RG DI AAC Sbjct: 284 AELLKNTPCKINLIPFNPFPQANYQTSTQEAIDLFSDYLIKKGYVVVTRRTRGDDIDAAC 343 Query: 363 GQLKSLSKRIPKVPRQE 379 GQL K K RQE Sbjct: 344 GQLA--GKINDKTKRQE 358 >gi|307543979|ref|YP_003896458.1| hypothetical protein HELO_1390 [Halomonas elongata DSM 2581] gi|307216003|emb|CBV41273.1| K06941 [Halomonas elongata DSM 2581] Length = 378 Score = 306 bits (785), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 164/364 (45%), Positives = 228/364 (62%), Gaps = 22/364 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 ++ +L+GM REE+E L IG + R +Q+ KWI+ G DF M+++S+ +R L Sbjct: 11 QRPNLLGMTREEMEAFFLSIG----EKKFRAAQVMKWIHQEGCSDFASMTNLSKALRAQL 66 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS--RGTLCVSSQV 122 ++ I P +V E S DGTRKW+L + +ETV IP + R TLCVSSQV Sbjct: 67 SEVAEIRGPSVVYEGTSSDGTRKWVLE-----VEDGSYVETVLIPADNGKRRTLCVSSQV 121 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GCSL CSFC TG Q RNLTA EI+ QV +A + G P + + R ++N+ Sbjct: 122 GCSLDCSFCSTGKQGFQRNLTAAEIIGQVWVASNSFG--PRHD--------TANRPVTNV 171 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL N+DNV ++ + D G S SKRR+TLSTSG VP + R+G+E+ V LAIS Sbjct: 172 VMMGMGEPLLNYDNVVPAMKLMLDDNGYSLSKRRVTLSTSGVVPMLDRLGDELDVSLAIS 231 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALN 301 LHA +++LR+ LVP+NRKY + L+DAC+ Y + R +T EY ++K +ND A Sbjct: 232 LHAANDELRSELVPLNRKYNIRTLLDACQRYLAKCDDTRMVTIEYTLIKDVNDQQEHARQ 291 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++L+ +P+KINLIPFNP+P Y + + F + + GY++PIR+ RG DI AA Sbjct: 292 LAELLQELPSKINLIPFNPFPHSGYETPSRNQVKRFQQWLADLGYTAPIRSTRGDDIDAA 351 Query: 362 CGQL 365 CGQL Sbjct: 352 CGQL 355 >gi|255321140|ref|ZP_05362306.1| radical SAM enzyme, Cfr family [Acinetobacter radioresistens SK82] gi|262380171|ref|ZP_06073326.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter radioresistens SH164] gi|255301694|gb|EET80945.1| radical SAM enzyme, Cfr family [Acinetobacter radioresistens SK82] gi|262298365|gb|EEY86279.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter radioresistens SH164] Length = 411 Score = 306 bits (785), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 172/371 (46%), Positives = 228/371 (61%), Gaps = 25/371 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 LKK +L+GM R ELE K+G + R Q+ KW++ + DF M++IS ++R Sbjct: 28 LKKVNLLGMSRAELENFFEKLG----EKKFRAGQVMKWMHQYFVTDFAEMTNISGKLRAK 83 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGTLCVS 119 L Q I PE+V S DGTRKW+ R G +ETV IP + R TLC+S Sbjct: 84 LEQLCEIKAPEVVHRHYSKDGTRKWVFRVGD---GAGSLVETVLIPAEDKTGLRKTLCIS 140 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLA-RSLLGDFPGCEDIEGMVIPSVGRK 178 SQVGC+L CSFC TG Q R+LT +EI+ Q+ +A +S + D P E R Sbjct: 141 SQVGCALDCSFCSTGKQGFQRDLTPDEIIGQLWVANQSYMEDVPVAERT---------RS 191 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238 ++N+VMMGMGEPL N+D V S+ I D SKRR+TLSTSG VP I ++ ++I V Sbjct: 192 VTNVVMMGMGEPLLNYDAVLSSMYIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDIDVA 251 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY---PGLSNARR-ITFEYVMLKGIND 294 LAISLHA +++LRN LVPIN+KYPL LI AC+ Y G +AR+ +T EYVML G+ND Sbjct: 252 LAISLHAPNDELRNELVPINKKYPLAQLIAACQRYINKDGNESARKHVTIEYVMLDGVND 311 Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 S A +I++LK +P+KINLIPFNP+P Y S + I+ F + + +G+ IR R Sbjct: 312 SLEHAQQMIRLLKNLPSKINLIPFNPFPHAPYGRSSRNRIIAFQKALSDAGFVCTIRQTR 371 Query: 355 GLDILAACGQL 365 G DI AACGQL Sbjct: 372 GDDIDAACGQL 382 >gi|194365435|ref|YP_002028045.1| radical SAM enzyme, Cfr family [Stenotrophomonas maltophilia R551-3] gi|254807214|sp|B4SSW3|RLMN_STRM5 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|194348239|gb|ACF51362.1| radical SAM enzyme, Cfr family [Stenotrophomonas maltophilia R551-3] Length = 401 Score = 306 bits (785), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 162/371 (43%), Positives = 229/371 (61%), Gaps = 28/371 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K++L+ + R LE+ +++ ++ R Q+ KWI+ R + +F M+D+ + +R L Sbjct: 22 KQNLLDLDRAGLEKFFVEVLGEKK---FRAHQVMKWIHHRYVTEFDEMTDLGKVLRAKLQ 78 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +H ++ P IV +K S DGT KWLL A + G IETVYIP+K+RGTLCVSSQVGC Sbjct: 79 EHAEVLVPNIVFDKPSADGTHKWLL---AMGVDGKNAIETVYIPDKTRGTLCVSSQVGCG 135 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC T TQ RNLT EI+ QV +A LG+ +P R+++N+VMM Sbjct: 136 LNCTFCSTATQGFNRNLTTAEIIGQVWIAARHLGN-----------VPHQMRRLTNVVMM 184 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SLHA Sbjct: 185 GMGEPLMNFDNVVRAMSVMRDDLGYGLANKRVTLSTSGLVPQIDRLSTESDVSLAVSLHA 244 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNLI 303 ++ LR LVP+N+KYP+ L+ +C Y +N RR +TFEY ++KGIND P A L Sbjct: 245 PNDALRETLVPLNKKYPIAELMASCARYL-RANKRRESVTFEYTLMKGINDKPEHARELA 303 Query: 304 KILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 ++++ K+NLIPFNP+PG Y S++ I F + + S + +R RG Sbjct: 304 RLMRQFDNAVQAKDSGKVNLIPFNPFPGTRYERSEEAHIRAFQKILLDSNVLTMVRRTRG 363 Query: 356 LDILAACGQLK 366 DI AACGQLK Sbjct: 364 DDIDAACGQLK 374 >gi|255292044|dbj|BAH90525.1| conserved hypothetical protein [uncultured bacterium] gi|255292512|dbj|BAH89627.1| radical SAM enzyme [uncultured bacterium] gi|255293032|dbj|BAH90127.1| radical SAM enzyme [uncultured bacterium] Length = 364 Score = 306 bits (784), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 159/360 (44%), Positives = 212/360 (58%), Gaps = 20/360 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ R LE +G R Q+ +W++ G DF M+++S+ +R L Sbjct: 7 KTNLLGLDRPGLEGLFASLG----EKPFRAGQVLQWLHAHGCEDFAAMTNLSKALRERLA 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 Q I P++ + ++ DGTRKWL + P G IETVYIPE RGTLCVSSQVGC Sbjct: 63 QESQIAAPQVQADHLASDGTRKWLFQLP-----GGSAIETVYIPETRRGTLCVSSQVGCQ 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC T Q RNL +EI+ Q+ A LL P E + I+N+V M Sbjct: 118 LNCSFCQTARQGFNRNLGVDEIVGQIWAASRLLPPHPARE-----------KPITNVVFM 166 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ + D + S RR+T+STSG VP I R+ EE V LA+SLHA Sbjct: 167 GMGEPLLNFDNVVAAIRVMLDDLAYGLSWRRVTVSTSGVVPMIDRLREECPVALAVSLHA 226 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + LR LVP+NR+YP+++L+DACR Y RRITFEY +L G+ND P A L K+ Sbjct: 227 PDDALRAELVPLNRRYPIDVLLDACRRYVAGDQRRRITFEYTLLAGVNDHPGQAKALAKL 286 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L +P+K+NLIP+NP G Y S + + F + + R G + +R RG DI ACGQL Sbjct: 287 LARVPSKVNLIPYNPVAGLPYATSPPQAVAQFRDELLRHGLVATVRKTRGDDIAGACGQL 346 >gi|56708143|ref|YP_170039.1| radical SAM superfamily protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110670614|ref|YP_667171.1| radical SAM superfamily protein [Francisella tularensis subsp. tularensis FSC198] gi|224457239|ref|ZP_03665712.1| radical SAM superfamily protein [Francisella tularensis subsp. tularensis MA00-2987] gi|254370628|ref|ZP_04986633.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254874946|ref|ZP_05247656.1| radical SAM superfamily protein [Francisella tularensis subsp. tularensis MA00-2987] gi|81597446|sp|Q5NG03|RLMN_FRATT RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123063459|sp|Q14HF5|RLMN_FRAT1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|54112615|gb|AAV28941.1| NT02FT0031 [synthetic construct] gi|56604635|emb|CAG45691.1| Radical SAM superfamily protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110320947|emb|CAL09074.1| Radical SAM superfamily protein [Francisella tularensis subsp. tularensis FSC198] gi|151568871|gb|EDN34525.1| hypothetical protein FTBG_00416 [Francisella tularensis subsp. tularensis FSC033] gi|254840945|gb|EET19381.1| radical SAM superfamily protein [Francisella tularensis subsp. tularensis MA00-2987] gi|282159349|gb|ADA78740.1| Radical SAM superfamily protein [Francisella tularensis subsp. tularensis NE061598] Length = 370 Score = 306 bits (784), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 158/362 (43%), Positives = 227/362 (62%), Gaps = 22/362 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ ++ +E+ + IG + H R Q++KWI+ +G+ DF M+D+ + +RH L Sbjct: 5 KVNLLGLNQKAIEDFFISIGEKKFHAR----QVFKWIHKKGVIDFDAMTDLGKNLRHKLK 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I P++V K S DGT KWL+ +GG +ETV+I + RGTLCVSSQVGC+ Sbjct: 61 EKAQITIPKVVFSKASKDGTHKWLID-----VGGSA-VETVFILAEGRGTLCVSSQVGCT 114 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q RNL+A E++ Q+ +A L G D ++NIVMM Sbjct: 115 LNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDF----------TVTNIVMM 164 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+NV ++ I D + S+R++TLSTSG VP I + E+ GV LA+SLHA Sbjct: 165 GMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHA 224 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ LRN +VPIN+KY ++ L++AC+ Y + ITFEY +++ +ND+ DA L+ + Sbjct: 225 PNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLIEEVNDNLSDAEELVAL 284 Query: 306 LKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 LK +PAKINLIPFNP+PG Y I F E ++ +G+ + +R RG DI AACG Sbjct: 285 LKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAACG 344 Query: 364 QL 365 QL Sbjct: 345 QL 346 >gi|304387385|ref|ZP_07369577.1| cfr family radical SAM enzyme [Neisseria meningitidis ATCC 13091] gi|304338636|gb|EFM04754.1| cfr family radical SAM enzyme [Neisseria meningitidis ATCC 13091] Length = 364 Score = 306 bits (783), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 153/333 (45%), Positives = 215/333 (64%), Gaps = 16/333 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +W++ G ++F M+D+++ +RH LN+ I P+++ + S DGTRKWLL Sbjct: 25 FRAKQVMRWMHQSGAQNFNEMTDLAKSLRHKLNEQAGIEIPKLMMSQESSDGTRKWLLD- 83 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE RGTLC+SSQVGC+L C+FC TG Q RNLTA EI+ Q+ Sbjct: 84 ----VGTGNGVETVFIPESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLW 139 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A +G V P R ISN+VMMGMGEP+ NFDNV +LSI D G Sbjct: 140 WANKAMG-----------VTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGL 188 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+T+STSG VP + R+ + + V LA+SLHA ++++RN +VP+N+KYPL+ L+ AC+ Sbjct: 189 SRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACQR 248 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + ITFEYVML GIND + A LI+++ +P K NLIPFNP+P Y S + Sbjct: 249 YLVKAPRDFITFEYVMLDGINDKAQHARELIELVTDVPCKFNLIPFNPFPNSRYERSSNE 308 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +I F + ++++G+ +R RG DI AACGQL Sbjct: 309 NIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341 >gi|62260668|gb|AAX77923.1| unknown protein [synthetic construct] Length = 405 Score = 306 bits (783), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 158/362 (43%), Positives = 227/362 (62%), Gaps = 22/362 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ ++ +E+ + IG + H R Q++KWI+ +G+ DF M+D+ + +RH L Sbjct: 31 KVNLLGLNQKAIEDFFISIGEKKFHAR----QVFKWIHKKGVIDFDAMTDLGKNLRHKLK 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I P++V K S DGT KWL+ +GG +ETV+I + RGTLCVSSQVGC+ Sbjct: 87 EKAQITIPKVVFSKASKDGTHKWLID-----VGGSA-VETVFILAEGRGTLCVSSQVGCT 140 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q RNL+A E++ Q+ +A L G D ++NIVMM Sbjct: 141 LNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDF----------TVTNIVMM 190 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+NV ++ I D + S+R++TLSTSG VP I + E+ GV LA+SLHA Sbjct: 191 GMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHA 250 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ LRN +VPIN+KY ++ L++AC+ Y + ITFEY +++ +ND+ DA L+ + Sbjct: 251 PNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLIEEVNDNLSDAEELVAL 310 Query: 306 LKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 LK +PAKINLIPFNP+PG Y I F E ++ +G+ + +R RG DI AACG Sbjct: 311 LKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAACG 370 Query: 364 QL 365 QL Sbjct: 371 QL 372 >gi|59801026|ref|YP_207738.1| hypothetical protein NGO0596 [Neisseria gonorrhoeae FA 1090] gi|194098883|ref|YP_002001947.1| hypothetical protein NGK_1322 [Neisseria gonorrhoeae NCCP11945] gi|239999168|ref|ZP_04719092.1| hypothetical protein Ngon3_06775 [Neisseria gonorrhoeae 35/02] gi|240013924|ref|ZP_04720837.1| hypothetical protein NgonD_04618 [Neisseria gonorrhoeae DGI18] gi|240016366|ref|ZP_04722906.1| hypothetical protein NgonFA_04214 [Neisseria gonorrhoeae FA6140] gi|240080485|ref|ZP_04725028.1| hypothetical protein NgonF_04112 [Neisseria gonorrhoeae FA19] gi|240113147|ref|ZP_04727637.1| hypothetical protein NgonM_06171 [Neisseria gonorrhoeae MS11] gi|240118201|ref|ZP_04732263.1| hypothetical protein NgonPID_07036 [Neisseria gonorrhoeae PID1] gi|240121493|ref|ZP_04734455.1| hypothetical protein NgonPI_06948 [Neisseria gonorrhoeae PID24-1] gi|240123749|ref|ZP_04736705.1| hypothetical protein NgonP_07399 [Neisseria gonorrhoeae PID332] gi|240125940|ref|ZP_04738826.1| hypothetical protein NgonSK_06937 [Neisseria gonorrhoeae SK-92-679] gi|240128452|ref|ZP_04741113.1| hypothetical protein NgonS_07451 [Neisseria gonorrhoeae SK-93-1035] gi|254493940|ref|ZP_05107111.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268594999|ref|ZP_06129166.1| ribosomal RNA large subunit methyltransferase N [Neisseria gonorrhoeae 35/02] gi|268596621|ref|ZP_06130788.1| ribosomal RNA large subunit methyltransferase N [Neisseria gonorrhoeae FA19] gi|268599227|ref|ZP_06133394.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268603913|ref|ZP_06138080.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268682376|ref|ZP_06149238.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268684534|ref|ZP_06151396.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|268686844|ref|ZP_06153706.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|293398890|ref|ZP_06643055.1| cfr family radical SAM enzyme [Neisseria gonorrhoeae F62] gi|75356171|sp|Q5F911|RLMN_NEIG1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807190|sp|B4RMG2|RLMN_NEIG2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|59717921|gb|AAW89326.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090] gi|193934173|gb|ACF29997.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945] gi|226512980|gb|EEH62325.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268548388|gb|EEZ43806.1| ribosomal RNA large subunit methyltransferase N [Neisseria gonorrhoeae 35/02] gi|268550409|gb|EEZ45428.1| ribosomal RNA large subunit methyltransferase N [Neisseria gonorrhoeae FA19] gi|268583358|gb|EEZ48034.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268588044|gb|EEZ52720.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268622660|gb|EEZ55060.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268624818|gb|EEZ57218.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|268627128|gb|EEZ59528.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|291610304|gb|EFF39414.1| cfr family radical SAM enzyme [Neisseria gonorrhoeae F62] gi|317164455|gb|ADV07996.1| hypothetical protein NGTW08_1028 [Neisseria gonorrhoeae TCDC-NG08107] Length = 364 Score = 306 bits (783), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 153/333 (45%), Positives = 216/333 (64%), Gaps = 16/333 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +W++ G ++F M+D+++ +RH LN+ SI P+++ + S DGTRKWLL Sbjct: 25 FRAKQVMRWMHQSGAQNFDEMTDLAKSLRHKLNEQASIEIPKLMMSQESSDGTRKWLLD- 83 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE RGTLC+SSQVGC+L C+FC TG Q RNLTA EI+ Q+ Sbjct: 84 ----VGTGNGVETVFIPESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLW 139 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A +G V P R ISN+VMMGMGEP+ NFDNV +LSI D G Sbjct: 140 WANKAMG-----------VTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGL 188 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+T+STSG VP + R+ + + V LA+SLHA ++++RN +VP+N+KYPL+ L+ AC+ Sbjct: 189 SRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACQR 248 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + ITFEYVML G+ND + A LI+++K +P K NLIPFNP+P Y S + Sbjct: 249 YLVKAPRDFITFEYVMLDGVNDKAQHAYELIELVKDVPCKFNLIPFNPFPNSGYERSSNE 308 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +I F + ++++ + +R RG DI AACGQL Sbjct: 309 NIRIFRDILQQAEFVVTVRKTRGDDIDAACGQL 341 >gi|309379239|emb|CBX22196.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 364 Score = 305 bits (782), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 153/333 (45%), Positives = 216/333 (64%), Gaps = 16/333 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ G ++F M+D+++ +RH LN+ +I P+++ + S DGTRKWLL Sbjct: 25 FRAKQVMRWIHQSGAQNFDEMTDLAKSLRHKLNEQANIGIPKLMMSQESSDGTRKWLLD- 83 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE RGTLC+SSQVGC+L C+FC TG Q RNLTA EI+ Q+ Sbjct: 84 ----VGTGNGVETVFIPESERGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLW 139 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A +G V P R ISN+VMMGMGEP+ NFDNV +LSI D G Sbjct: 140 WANKAMG-----------VTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDYGYGL 188 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+T+STSG V + R+ + + V LA+SLHA ++++R+ +VP+N+KYPL+ L+ ACR Sbjct: 189 SRRRVTVSTSGMVSQMDRLRDVMPVALAVSLHASNDEVRDQIVPLNKKYPLKELMAACRR 248 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + ITFEYVML G+ND + A LI ++K +P K NLIPFNP+P Y S ++ Sbjct: 249 YLVKAPRDFITFEYVMLDGVNDKAQHAHELINLVKDVPCKFNLIPFNPFPNSGYERSSKE 308 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +I F + ++++G+ +R RG DI AACGQL Sbjct: 309 NIRVFKDILQQAGFVVTVRKTRGDDIDAACGQL 341 >gi|218768330|ref|YP_002342842.1| hypothetical protein NMA1522 [Neisseria meningitidis Z2491] gi|205829822|sp|A1ISB3|RLMN_NEIMA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|121052338|emb|CAM08669.1| conserved hypothetical protein [Neisseria meningitidis Z2491] gi|261392411|emb|CAX49953.1| conserved hypothetical protein [Neisseria meningitidis 8013] gi|319410575|emb|CBY90944.1| conserved hypothetical protein [Neisseria meningitidis WUE 2594] gi|325134450|gb|EGC57095.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M13399] Length = 364 Score = 305 bits (781), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 153/333 (45%), Positives = 215/333 (64%), Gaps = 16/333 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +W++ G ++F M+D+++ +RH LN+ I P+++ + S DGTRKWLL Sbjct: 25 FRAKQVMRWMHQSGAQNFNEMTDLAKSLRHKLNEQAGIEIPKLMMSQKSSDGTRKWLLD- 83 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE RGTLC+SSQVGC+L C+FC TG Q RNLTA EI+ Q+ Sbjct: 84 ----VGTGNGVETVFIPESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLW 139 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A +G V P R ISN+VMMGMGEP+ NFDNV +LSI D G Sbjct: 140 WANKAMG-----------VTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGL 188 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+T+STSG VP + R+ + + V LA+SLHA ++++RN +VP+N+KYPL+ L+ AC+ Sbjct: 189 SRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACQR 248 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + ITFEYVML GIND + A LI+++ +P K NLIPFNP+P Y S + Sbjct: 249 YLVKAPRDFITFEYVMLDGINDKAQHARELIELVTDVPCKFNLIPFNPFPNSGYERSSNE 308 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +I F + ++++G+ +R RG DI AACGQL Sbjct: 309 NIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341 >gi|15677174|ref|NP_274327.1| hypothetical protein NMB1308 [Neisseria meningitidis MC58] gi|81784539|sp|Q9JZ42|RLMN_NEIMB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|7226549|gb|AAF41683.1| conserved hypothetical protein [Neisseria meningitidis MC58] gi|316984107|gb|EFV63085.1| radical SAM enzyme, Cfr family [Neisseria meningitidis H44/76] gi|325130328|gb|EGC53094.1| radical SAM enzyme, Cfr family [Neisseria meningitidis OX99.30304] gi|325136188|gb|EGC58796.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M0579] gi|325140467|gb|EGC62988.1| radical SAM enzyme, Cfr family [Neisseria meningitidis CU385] gi|325200066|gb|ADY95521.1| radical SAM enzyme, Cfr family [Neisseria meningitidis H44/76] gi|325201981|gb|ADY97435.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M01-240149] gi|325208268|gb|ADZ03720.1| radical SAM enzyme, Cfr family [Neisseria meningitidis NZ-05/33] Length = 364 Score = 305 bits (781), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 153/333 (45%), Positives = 215/333 (64%), Gaps = 16/333 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +W++ G ++F M+D+++ +RH LN+ I P+++ + S DGTRKWLL Sbjct: 25 FRAKQVMRWMHQSGAQNFDEMTDLAKSLRHKLNEQAGIEIPKLMMSQKSSDGTRKWLLD- 83 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE RGTLC+SSQVGC+L C+FC TG Q RNLTA EI+ Q+ Sbjct: 84 ----VGTGNGVETVFIPESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLW 139 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A +G V P R ISN+VMMGMGEP+ NFDNV +LSI D G Sbjct: 140 WANKAMG-----------VTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGL 188 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+T+STSG VP + R+ + + V LA+SLHA ++++RN +VP+N+KYPL+ L+ AC+ Sbjct: 189 SRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACQR 248 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + ITFEYVML GIND + A LI+++ +P K NLIPFNP+P Y S + Sbjct: 249 YLVKAPRDFITFEYVMLDGINDKAQHARELIELVTDVPCKFNLIPFNPFPNSGYERSSNE 308 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +I F + ++++G+ +R RG DI AACGQL Sbjct: 309 NIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341 >gi|254670500|emb|CBA06240.1| conserved hypothetical protein [Neisseria meningitidis alpha153] gi|325128395|gb|EGC51278.1| radical SAM enzyme, Cfr family [Neisseria meningitidis N1568] Length = 364 Score = 305 bits (781), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 153/333 (45%), Positives = 215/333 (64%), Gaps = 16/333 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +W++ G ++F M+D+++ +RH LN+ I P+++ + S DGTRKWLL Sbjct: 25 FRAKQVMRWMHQSGAQNFNEMTDLAKSLRHKLNEQAGIEIPKLMMSQESSDGTRKWLLD- 83 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE RGTLC+SSQVGC+L C+FC TG Q RNLTA EI+ Q+ Sbjct: 84 ----VGTGNGVETVFIPESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLW 139 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A +G V P R ISN+VMMGMGEP+ NFDNV +LSI D G Sbjct: 140 WANKAMG-----------VTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGL 188 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+T+STSG VP + R+ + + V LA+SLHA ++++RN +VP+N+KYPL+ L+ AC+ Sbjct: 189 SRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACQR 248 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + ITFEYVML GIND + A LI+++ +P K NLIPFNP+P Y S + Sbjct: 249 YLVKAPRDFITFEYVMLDGINDKAQHARELIELVTDVPCKFNLIPFNPFPNSGYERSSNE 308 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +I F + ++++G+ +R RG DI AACGQL Sbjct: 309 NIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341 >gi|299771620|ref|YP_003733646.1| UPF0063 protein yfgB [Acinetobacter sp. DR1] gi|298701708|gb|ADI92273.1| UPF0063 protein yfgB [Acinetobacter sp. DR1] Length = 411 Score = 305 bits (781), Expect = 9e-81, Method: Compositional matrix adjust. Identities = 170/369 (46%), Positives = 224/369 (60%), Gaps = 25/369 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+GM R ELE+ IG + R Q+ KWI+ I DF M++IS ++R L Sbjct: 30 KVNLLGMSRTELEKFFEDIG----EKKFRAGQVMKWIHQYFITDFAEMTNISGKLRAKLE 85 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGTLCVSSQ 121 Q I PE+V S DGTRKW+ R G +ETV IP + R TLC+SSQ Sbjct: 86 QICEIKAPEVVHRHYSKDGTRKWVFRVGD---GAGSLVETVLIPAEDKTGLRKTLCISSQ 142 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR-SLLGDFPGCEDIEGMVIPSVGRKIS 180 VGC+L CSFC TG Q R+LT +EI+ Q+ +A S + + P E R ++ Sbjct: 143 VGCALDCSFCSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPVAER---------ERSVT 193 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+D V S+ I D SKRR+TLSTSG VP I ++ ++I V LA Sbjct: 194 NVVMMGMGEPLLNYDAVLSSMQIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALA 253 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHY----PGLSNARRITFEYVMLKGINDSP 296 ISLHA +++LRN LVPIN+KYPL LI AC+ Y S + +T EYVML+G+ND P Sbjct: 254 ISLHAPNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESTRKHVTIEYVMLEGVNDQP 313 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 A +IK+LK +P+KINLIPFNP+P Y S + I++F + + +G+ IR RG Sbjct: 314 EHAQQMIKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGD 373 Query: 357 DILAACGQL 365 DI AACGQL Sbjct: 374 DIDAACGQL 382 >gi|94501127|ref|ZP_01307650.1| hypothetical protein RED65_06057 [Oceanobacter sp. RED65] gi|94426703|gb|EAT11688.1| hypothetical protein RED65_06057 [Oceanobacter sp. RED65] Length = 378 Score = 305 bits (780), Expect = 9e-81, Method: Compositional matrix adjust. Identities = 165/362 (45%), Positives = 225/362 (62%), Gaps = 20/362 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+G+ +++++ +++G R QI KWI+ GI +F M+++S+ +R L Sbjct: 6 EKVNLLGLSPKKMKDFFVELG----EKPFRAQQILKWIHQVGIDNFDDMTNVSKVMREKL 61 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 ++ YPE+V IS DGT+KW++R P G +ETVYIPE RGTLCVSSQ+GC Sbjct: 62 KDVATVQYPEVVFHDISKDGTKKWVMRMP-----GGSSVETVYIPEGDRGTLCVSSQIGC 116 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 SL CSFC TG Q R+L+ EI+ QV +A D PG E E RKI+N+VM Sbjct: 117 SLDCSFCSTGKQGFNRDLSVAEIIGQVYVAAKSF-DKPG-EKRE--------RKITNVVM 166 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV ++ + D SKRR+TLSTSG VP + + + V LA+SLH Sbjct: 167 MGMGEPLMNFDNVVDAMDLMMDDFCYGLSKRRVTLSTSGVVPKLYDLADVSDVSLAVSLH 226 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALNLI 303 A +++LRN LVPIN+KYP++ L+ AC HY G LS+ R++T EY ++ +ND A L Sbjct: 227 APNDELRNELVPINKKYPIKDLMAACNHYMGSLSDRRKLTVEYTLINKVNDELEHAQQLA 286 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+LK P KINLIPFNP+P Y + F + + G+ IRT RG DI AACG Sbjct: 287 KLLKDTPCKINLIPFNPFPNSGYERPSNNRVYKFRDYLHSQGFIVTIRTTRGDDIDAACG 346 Query: 364 QL 365 QL Sbjct: 347 QL 348 >gi|241758847|ref|ZP_04756960.1| radical SAM enzyme, Cfr family [Neisseria flavescens SK114] gi|261380196|ref|ZP_05984769.1| radical SAM enzyme, Cfr family [Neisseria subflava NJ9703] gi|241321055|gb|EER57268.1| radical SAM enzyme, Cfr family [Neisseria flavescens SK114] gi|284797045|gb|EFC52392.1| radical SAM enzyme, Cfr family [Neisseria subflava NJ9703] Length = 362 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 155/346 (44%), Positives = 221/346 (63%), Gaps = 21/346 (6%) Query: 25 GIPQRHVRM-----RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEK 79 G+ Q M R Q+ +W++ G ++F+ M+D+++ +R LN+ +I P+++ + Sbjct: 12 GLTQHFAEMGEKPFRAKQVMRWMHQAGAQNFEEMTDLAKSLRAKLNEQATIEVPKLMMAQ 71 Query: 80 ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV 139 S DGTRKWLL +G +ETV+IPE RGTLC+SSQVGC+L C+FC TG Q Sbjct: 72 ESTDGTRKWLLD-----VGTGNGVETVFIPEAERGTLCISSQVGCALECTFCSTGRQGFN 126 Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199 RNLTA EI+ Q+ A +G V P R ISN+VMMGMGEP+ NFDNV Sbjct: 127 RNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMMGMGEPMANFDNVVT 175 Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINR 259 +LSI D G S+RR+T+STSG VP + R+ + + V LA+SLHA ++++R+ +VP+N+ Sbjct: 176 ALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDAMPVALAVSLHASNDEVRDQIVPLNK 235 Query: 260 KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFN 319 KYPL+ L+ AC+ Y + ITFEYVML GIND + A LI+++K +P K NLIPFN Sbjct: 236 KYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIELVKDVPCKFNLIPFN 295 Query: 320 PWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 P+P Y S ++I F + ++++G+ +R RG DI AACGQL Sbjct: 296 PFPNSGYERSTNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341 >gi|254673132|emb|CBA07913.1| conserved hypothetical protein [Neisseria meningitidis alpha275] gi|325144551|gb|EGC66850.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M01-240013] Length = 364 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 152/333 (45%), Positives = 215/333 (64%), Gaps = 16/333 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +W++ G ++F M+D+++ +RH LN+ I P+++ + S DGTRKWLL Sbjct: 25 FRAKQVMRWMHQSGAQNFNEMTDLAKSLRHKLNEQAGIEIPKLMMSQKSSDGTRKWLLD- 83 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE RGTLC+SSQVGC+L C+FC TG Q RNLTA EI+ Q+ Sbjct: 84 ----VGTGNGVETVFIPESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLW 139 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A +G V P R ISN+VMMGMGEP+ NFDNV +LSI D G Sbjct: 140 WANKAMG-----------VTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGL 188 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+T+STSG +P + R+ + + V LA+SLHA ++++RN +VP+N+KYPL+ L+ AC+ Sbjct: 189 SRRRVTVSTSGMIPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACQR 248 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + ITFEYVML GIND + A LI+++ +P K NLIPFNP+P Y S + Sbjct: 249 YLVKAPRDFITFEYVMLDGINDKAQHARELIELVTDVPCKFNLIPFNPFPNSGYERSSNE 308 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +I F + ++++G+ +R RG DI AACGQL Sbjct: 309 NIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341 >gi|110834724|ref|YP_693583.1| Fe-S-cluster redox protein [Alcanivorax borkumensis SK2] gi|123050394|sp|Q0VND7|RLMN_ALCBS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|110647835|emb|CAL17311.1| conserved Fe-S-cluster redox protein, putative [Alcanivorax borkumensis SK2] Length = 381 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 163/373 (43%), Positives = 226/373 (60%), Gaps = 33/373 (8%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +K +L+G+ R ++EE L +G + R Q+ KWI+ F+ M+D+ + + Sbjct: 1 MTAQQKVNLLGLSRPQMEEFFLTMG----EKKFRAQQVLKWIHHHQADSFEQMTDVGKAL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L++ I P++ E IS DGTRKW+ GG VE TV+IP+ RGTLCVSS Sbjct: 57 RQKLSEVAEIRGPKVTHESISRDGTRKWVFEMDN---GGAVE--TVFIPDGRRGTLCVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLA------RSLLGDFPGCEDIEGMVIPS 174 QVGC++ CSFC TG Q R++T+ EI+ QV A R LG P Sbjct: 112 QVGCAVDCSFCSTGKQGFQRDMTSAEIIGQVWQASRAFGPRRNLGQHP------------ 159 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234 I+N+VMMGMGEPL N+D V ++ I D +G K+RIT+STSG +P + ++ E+ Sbjct: 160 ----ITNVVMMGMGEPLLNYDKVLTAMRIMKDDLGYGIGKKRITVSTSGVIPKMNQLSED 215 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGI 292 + V LA+SLHA +++LRN LVP+NRKYPL+ L+ AC+ Y R IT EYVML+ + Sbjct: 216 LDVSLAVSLHAPNDELRNQLVPLNRKYPLKDLMAACKRYSKNITHRHNTITMEYVMLRDV 275 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 ND P A L+K+L GIP K+NLIPFNP+P Y S + DI+ F + + +G + +RT Sbjct: 276 NDKPEHARQLVKLLNGIPVKVNLIPFNPFPHAGYERSRKNDILEFHKYLNDNGVMTTVRT 335 Query: 353 PRGLDILAACGQL 365 RG DI AACGQL Sbjct: 336 TRGDDIDAACGQL 348 >gi|120554052|ref|YP_958403.1| radical SAM protein [Marinobacter aquaeolei VT8] gi|205829787|sp|A1TZP7|RLMN_MARAV RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|120323901|gb|ABM18216.1| 23S rRNA m(2)A-2503 methyltransferase [Marinobacter aquaeolei VT8] Length = 369 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 160/362 (44%), Positives = 225/362 (62%), Gaps = 21/362 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+GM + +LE +G R R Q+ +W++ RG+ DF M+++S+ +R L Sbjct: 6 EKVNLLGMPKAKLEAFFETLG----EKRFRAQQVLQWMHQRGVDDFDQMTNMSKSLREQL 61 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PE+V ++ S DGTRKW++R + +ETV IP+ RGTLCVSSQ+GC Sbjct: 62 KEVAEIRGPEVVYDETSKDGTRKWVMR-----MDNGNSVETVLIPDGERGTLCVSSQIGC 116 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 SL C+FC TG + RNLTA EI+ QV +AR F + R I+N+VM Sbjct: 117 SLDCTFCSTGKRGFNRNLTAAEIIGQVWVARRAFMPFDPND-----------RPITNVVM 165 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NF+NV ++++ + + SKRR+TLSTSG VP + R+GE V LAISLH Sbjct: 166 MGMGEPLLNFENVVDAMNLMMEDLAYGISKRRVTLSTSGVVPALDRLGEVTDVSLAISLH 225 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLI 303 A +++LRN LVP+N+KYP+ L+ A R Y L + R+ T EY +++G+ND P A L+ Sbjct: 226 APNDELRNQLVPLNKKYPIAELLAATRRYLSRLPDKRKATIEYTVIEGVNDQPEHARELV 285 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LKG+P KINLIPFNP+P ++ F + +GY + IRT RG DI AACG Sbjct: 286 VLLKGLPCKINLIPFNPFPESDFRRPSMNATRRFQTVLNEAGYVTTIRTTRGDDIDAACG 345 Query: 364 QL 365 QL Sbjct: 346 QL 347 >gi|319638408|ref|ZP_07993170.1| ribosomal RNA large subunit methyltransferase N [Neisseria mucosa C102] gi|317400157|gb|EFV80816.1| ribosomal RNA large subunit methyltransferase N [Neisseria mucosa C102] Length = 362 Score = 304 bits (779), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 155/346 (44%), Positives = 221/346 (63%), Gaps = 21/346 (6%) Query: 25 GIPQRHVRM-----RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEK 79 G+ Q M R Q+ +W++ G ++F+ M+D+++ +R LN+ +I P+++ + Sbjct: 12 GLTQHFAEMGEKPFRAKQVMRWMHQAGAQNFEEMTDLAKSLRAKLNEQATIEVPKLMMAQ 71 Query: 80 ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV 139 S DGTRKWLL +G +ETV+IPE RGTLC+SSQVGC+L C+FC TG Q Sbjct: 72 ESTDGTRKWLLD-----VGTGNGVETVFIPEAERGTLCISSQVGCALECTFCSTGRQGFN 126 Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199 RNLTA EI+ Q+ A +G V P R ISN+VMMGMGEP+ NFDNV Sbjct: 127 RNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMMGMGEPMANFDNVVT 175 Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINR 259 +LSI D G S+RR+T+STSG VP + R+ + + V LA+SLHA ++++R+ +VP+N+ Sbjct: 176 ALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDAMPVALAVSLHASNDEVRDQIVPLNK 235 Query: 260 KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFN 319 KYPL+ L+ AC+ Y + ITFEYVML GIND + A LI+++K +P K NLIPFN Sbjct: 236 KYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIELVKDVPCKFNLIPFN 295 Query: 320 PWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 P+P Y S ++I F + ++++G+ +R RG DI AACGQL Sbjct: 296 PFPNSGYERSTNENIRIFRDILQQAGFVVTVRKTRGDDIDAACGQL 341 >gi|254427443|ref|ZP_05041150.1| radical SAM enzyme, Cfr family [Alcanivorax sp. DG881] gi|196193612|gb|EDX88571.1| radical SAM enzyme, Cfr family [Alcanivorax sp. DG881] Length = 380 Score = 304 bits (779), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 163/373 (43%), Positives = 226/373 (60%), Gaps = 33/373 (8%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +K +L+G+ R ++EE L +G + R Q+ KWI+ F+ M+D+ + + Sbjct: 1 MTAQQKVNLLGLSRPQMEEFFLTMG----EKKFRAQQVLKWIHHHQADSFEQMTDVGKAL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L++ I P++ E IS DGTRKW+ GG VE TV+IP+ RGTLCVSS Sbjct: 57 RQKLSEVAEIRGPKVTHESISRDGTRKWVFEMDN---GGAVE--TVFIPDGRRGTLCVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLA------RSLLGDFPGCEDIEGMVIPS 174 QVGC++ CSFC TG Q R++T+ EI+ QV A R LG P Sbjct: 112 QVGCAVDCSFCSTGKQGFQRDMTSAEIIGQVWQASRAFGPRRNLGQHP------------ 159 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234 I+N+VMMGMGEPL N+D V ++ I D +G K+RIT+STSG +P + ++ E+ Sbjct: 160 ----ITNVVMMGMGEPLLNYDKVLTAMRIMKDDLGYGIGKKRITVSTSGVIPKMNQLSED 215 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGI 292 + V LA+SLHA +++LRN LVP+NRKYPL+ L+ AC+ Y R IT EYVML+ + Sbjct: 216 LDVSLAVSLHAPNDELRNQLVPLNRKYPLKDLMAACKSYSKNITHRHNTITMEYVMLRDV 275 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 ND P A L+K+L GIP K+NLIPFNP+P Y S + DI+ F + + +G + +RT Sbjct: 276 NDKPEHARQLVKLLNGIPVKVNLIPFNPFPHAGYERSRKNDILEFHKYLNDNGVMTTVRT 335 Query: 353 PRGLDILAACGQL 365 RG DI AACGQL Sbjct: 336 TRGDDIDAACGQL 348 >gi|254499335|ref|ZP_05112006.1| radical SAM protein [Legionella drancourtii LLAP12] gi|254351440|gb|EET10304.1| radical SAM protein [Legionella drancourtii LLAP12] Length = 378 Score = 304 bits (779), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 161/333 (48%), Positives = 212/333 (63%), Gaps = 17/333 (5%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93 R QI +WI+ G+ DF M+++ + +R L+Q I PEIV + S DGT KWLL+ Sbjct: 29 RAQQIIQWIHQSGLVDFAQMTNLGKALREKLSQLSYIKVPEIVTCQKSSDGTHKWLLKLD 88 Query: 94 -ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 CI ETV+IPE +RGTLCVSSQVGC+L CSFC T Q RNL+ EI+ QV Sbjct: 89 CGNCI------ETVFIPEANRGTLCVSSQVGCALNCSFCSTAKQGFNRNLSTAEIIGQVW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 LA L G D ++++N+VMMGMGEPL NFDNV +++I D Sbjct: 143 LAVRELSTNQGVHD----------KRLTNVVMMGMGEPLLNFDNVVSAMNIMMDDFAYGL 192 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 SKRR+TLSTSG +P++ R+ + V LA+SLHA +++LRN LVPIN+KYPL L+ C+ Sbjct: 193 SKRRVTLSTSGVLPDLERLRQVSPVALAVSLHAPNDELRNELVPINKKYPLAQLMALCKI 252 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y R++TFEYVMLKG+ND P A LIK+L+ +PAK+NLIPFNP+P +Y S Q Sbjct: 253 YFKDEPRRKVTFEYVMLKGVNDQPEHATQLIKLLRDVPAKVNLIPFNPFPMTQYQRSSQA 312 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F + + +G ++ R RG DI AACGQL Sbjct: 313 AIDAFRDKLIANGINTITRKTRGDDIDAACGQL 345 >gi|308389428|gb|ADO31748.1| hypothetical protein NMBB_1442 [Neisseria meningitidis alpha710] Length = 364 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 152/333 (45%), Positives = 215/333 (64%), Gaps = 16/333 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +W++ G ++F M+D+++ +RH LN+ I P+++ + S DGTRKWLL Sbjct: 25 FRAKQVMRWMHQSGAQNFDEMTDLAKSLRHKLNEQAGIEIPKLMMSQKSSDGTRKWLLD- 83 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE RGTLC+SSQVGC+L C+FC TG Q RNLT+ EI+ Q+ Sbjct: 84 ----VGTGNGVETVFIPESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTSAEIIGQLW 139 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A +G V P R ISN+VMMGMGEP+ NFDNV +LSI D G Sbjct: 140 WANKAMG-----------VTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGL 188 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+T+STSG VP + R+ + + V LA+SLHA ++++RN +VP+N+KYPL+ L+ AC+ Sbjct: 189 SRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACQR 248 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + ITFEYVML GIND + A LI+++ +P K NLIPFNP+P Y S + Sbjct: 249 YLVKAPRDFITFEYVMLDGINDKAQHARELIELVTDVPCKFNLIPFNPFPNSGYERSSNE 308 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +I F + ++++G+ +R RG DI AACGQL Sbjct: 309 NIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341 >gi|325204309|gb|ADY99762.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M01-240355] Length = 364 Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 152/333 (45%), Positives = 215/333 (64%), Gaps = 16/333 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +W++ G ++F M+D+++ +RH LN+ I P+++ + S DGTRKWLL Sbjct: 25 FRAKQVMRWMHQSGAQNFNEMTDLAKSLRHKLNEQAGIEIPKLMMSQKSSDGTRKWLLD- 83 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE RGTLC+SSQVGC+L C+FC TG Q RNLT+ EI+ Q+ Sbjct: 84 ----VGTGNGVETVFIPESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTSAEIIGQLW 139 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A +G V P R ISN+VMMGMGEP+ NFDNV +LSI D G Sbjct: 140 WANKAMG-----------VTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGL 188 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+T+STSG VP + R+ + + V LA+SLHA ++++RN +VP+N+KYPL+ L+ AC+ Sbjct: 189 SRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACQR 248 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + ITFEYVML GIND + A LI+++ +P K NLIPFNP+P Y S + Sbjct: 249 YLVKAPRDFITFEYVMLDGINDKAQHARELIELVTDVPCKFNLIPFNPFPNSGYERSSNE 308 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +I F + ++++G+ +R RG DI AACGQL Sbjct: 309 NIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341 >gi|240115903|ref|ZP_04729965.1| hypothetical protein NgonPID1_06609 [Neisseria gonorrhoeae PID18] gi|260440282|ref|ZP_05794098.1| hypothetical protein NgonDG_04176 [Neisseria gonorrhoeae DGI2] gi|268601574|ref|ZP_06135741.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|291043577|ref|ZP_06569293.1| ribosomal RNA large subunit methyltransferase N [Neisseria gonorrhoeae DGI2] gi|268585705|gb|EEZ50381.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|291012040|gb|EFE04029.1| ribosomal RNA large subunit methyltransferase N [Neisseria gonorrhoeae DGI2] Length = 364 Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 152/333 (45%), Positives = 216/333 (64%), Gaps = 16/333 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +W++ G ++F M+D+++ +RH LN+ SI P+++ + S DGTRKWLL Sbjct: 25 FRAKQVMRWMHQSGAQNFDEMTDLAKSLRHKLNEQASIEIPKLMMSQESSDGTRKWLLD- 83 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE RGTLC+SSQVGC+L C+FC TG Q RNLTA EI+ Q+ Sbjct: 84 ----VGTGNGVETVFIPESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLW 139 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A +G V P R ISN+VMMGMGEP+ NFDNV +LSI + G Sbjct: 140 WANKAMG-----------VTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLNDHGYGL 188 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+T+STSG VP + R+ + + V LA+SLHA ++++RN +VP+N+KYPL+ L+ AC+ Sbjct: 189 SRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACQR 248 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + ITFEYVML G+ND + A LI+++K +P K NLIPFNP+P Y S + Sbjct: 249 YLVKAPRDFITFEYVMLDGVNDKAQHAYELIELVKDVPCKFNLIPFNPFPNSGYERSSNE 308 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +I F + ++++ + +R RG DI AACGQL Sbjct: 309 NIRIFRDILQQAEFVVTVRKTRGDDIDAACGQL 341 >gi|262280923|ref|ZP_06058706.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter calcoaceticus RUH2202] gi|262257823|gb|EEY76558.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter calcoaceticus RUH2202] Length = 411 Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 169/369 (45%), Positives = 225/369 (60%), Gaps = 25/369 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+GM R ELE+ IG + R Q+ KW++ I DF M++IS ++R L Sbjct: 30 KVNLLGMSRTELEKFFEDIG----EKKFRAGQVMKWMHQYFITDFAEMTNISGKLREKLE 85 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGTLCVSSQ 121 Q I PE+V S DGTRKW+ R G +ETV IP + R TLC+SSQ Sbjct: 86 QICEIKAPEVVHRHYSKDGTRKWVFRVGD---GAGSLVETVLIPAEDKTGLRKTLCISSQ 142 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR-SLLGDFPGCEDIEGMVIPSVGRKIS 180 VGC+L CSFC TG Q R+LT +EI+ Q+ +A S + + P E R ++ Sbjct: 143 VGCALDCSFCSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPVAER---------ERSVT 193 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+D V S+ I D SKRR+TLSTSG VP I ++ ++I V LA Sbjct: 194 NVVMMGMGEPLLNYDAVLSSMQIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALA 253 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHY----PGLSNARRITFEYVMLKGINDSP 296 ISLHA +++LRN LVPIN+KYPL LI AC+ Y S+ + +T EYVML+G+ND P Sbjct: 254 ISLHAPNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESSRKHVTIEYVMLEGVNDHP 313 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 A +IK+LK +P+KINLIPFNP+P Y S + I++F + + +G+ IR RG Sbjct: 314 EHAQQMIKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGD 373 Query: 357 DILAACGQL 365 DI AACGQL Sbjct: 374 DIDAACGQL 382 >gi|293610293|ref|ZP_06692594.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827525|gb|EFF85889.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325124474|gb|ADY83997.1| putative Fe-S-cluster redox enzyme [Acinetobacter calcoaceticus PHEA-2] Length = 411 Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 169/369 (45%), Positives = 224/369 (60%), Gaps = 25/369 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+GM R ELE+ IG + R Q+ KWI+ + DF M++IS ++R L Sbjct: 30 KVNLLGMSRPELEKFFEDIG----EKKFRAGQVMKWIHQYFVTDFAEMTNISGKLRAKLE 85 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGTLCVSSQ 121 Q I PE+V S DGTRKW+ R G +ETV IP + R TLC+SSQ Sbjct: 86 QICEIKAPEVVHRHYSKDGTRKWVFRVGE---GAGSLVETVLIPAEDKTGLRKTLCISSQ 142 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR-SLLGDFPGCEDIEGMVIPSVGRKIS 180 VGC+L CSFC TG Q R+LT +EI+ Q+ +A S + + P E R ++ Sbjct: 143 VGCALDCSFCSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPVAER---------ERSVT 193 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+D V S+ I D SKRR+TLSTSG VP I ++ ++I V LA Sbjct: 194 NVVMMGMGEPLLNYDAVLSSMQIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALA 253 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHY----PGLSNARRITFEYVMLKGINDSP 296 ISLHA +++LRN LVPIN+KYPL LI AC+ Y S + +T EYVML+G+ND P Sbjct: 254 ISLHAPNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESTRKHVTIEYVMLEGVNDQP 313 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 A +IK+LK +P+KINLIPFNP+P Y S + I++F + + +G+ IR RG Sbjct: 314 EHAQQMIKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGD 373 Query: 357 DILAACGQL 365 DI AACGQL Sbjct: 374 DIDAACGQL 382 >gi|50083794|ref|YP_045304.1| putative Fe-S-cluster redox enzyme [Acinetobacter sp. ADP1] gi|81393776|sp|Q6FEM6|RLMN_ACIAD RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|49529770|emb|CAG67482.1| conserved hypothetical protein; putative Fe-S-cluster redox enzyme [Acinetobacter sp. ADP1] Length = 414 Score = 303 bits (777), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 175/369 (47%), Positives = 225/369 (60%), Gaps = 25/369 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+GM R ELE+ +IG + R QI KWI+ + D M++IS ++R L Sbjct: 33 KVNLLGMSRIELEQFFEQIG----EKKFRAGQIMKWIHQYFVTDLAEMTNISGKLRTKLE 88 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK----SRGTLCVSSQ 121 Q I PE+V S DGTRKW+ R G +ETV IP + SR TLC+SSQ Sbjct: 89 QVCEIKAPEVVHRHYSKDGTRKWVFRVGE---GSGSLVETVLIPAEDKTGSRKTLCISSQ 145 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLA-RSLLGDFPGCEDIEGMVIPSVGRKIS 180 VGC+L CSFC TG Q R+LT EI+ Q+ +A +S + D P E R ++ Sbjct: 146 VGCALDCSFCSTGKQGFQRDLTPAEIIGQLWVANQSYVEDVPVAERT---------RAVT 196 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL NF V S+SI D SKRR+TLSTSG VP I ++ EE+ V LA Sbjct: 197 NVVMMGMGEPLLNFKPVVHSMSIMLDDYAYGMSKRRVTLSTSGVVPMIDKLAEELDVALA 256 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHY---PGLSNARR-ITFEYVMLKGINDSP 296 ISLHA +N LR+ LVPIN+KYPLE LI A + Y G +AR+ +T EYVML G+ND P Sbjct: 257 ISLHAPNNPLRDELVPINKKYPLEQLIAAAQRYITKDGNESARKHVTIEYVMLDGVNDHP 316 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 A L+K+LK +P+KINLIPFNP+P Y S + I+ F + + +G+ IR RG Sbjct: 317 EHAQQLVKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIMAFQKTLSDAGFVCTIRQTRGD 376 Query: 357 DILAACGQL 365 DI AACGQL Sbjct: 377 DIDAACGQL 385 >gi|261365781|ref|ZP_05978664.1| radical SAM enzyme, Cfr family [Neisseria mucosa ATCC 25996] gi|288565687|gb|EFC87247.1| radical SAM enzyme, Cfr family [Neisseria mucosa ATCC 25996] Length = 364 Score = 303 bits (777), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 153/333 (45%), Positives = 215/333 (64%), Gaps = 16/333 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ G + F M+D+++ +R LN+ S+ P+++ + S DGTRKWLL Sbjct: 25 FRAKQVMRWIHQAGAQSFDEMTDLAKSLRLKLNEQASVDVPKLMMAQESSDGTRKWLLD- 83 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE RGTLC+SSQVGC+L C+FC TG Q RNLTA EI+ Q+ Sbjct: 84 ----VGTGNGVETVFIPEAERGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLW 139 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A +G V P R ISN+VMMGMGEP+ NFDNV +LSI D G Sbjct: 140 WANKAMG-----------VTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGL 188 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+T+STSG VP + R+ + + V LA+SLHA ++++R+ +VP+N+KYPL+ L+ AC+ Sbjct: 189 SRRRVTVSTSGMVPQMDRLRDAMPVALAVSLHASNDEVRDQIVPLNKKYPLKELMAACQR 248 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + ITFEYVML GIND + A LI+++K +P K NLIPFNP+P Y S + Sbjct: 249 YLVKAPRDFITFEYVMLDGINDKAQHARELIELVKDVPCKFNLIPFNPFPNSGYERSTNE 308 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +I F + ++++G+ +R RG DI AACGQL Sbjct: 309 NIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341 >gi|261377750|ref|ZP_05982323.1| radical SAM enzyme, Cfr family [Neisseria cinerea ATCC 14685] gi|269146035|gb|EEZ72453.1| radical SAM enzyme, Cfr family [Neisseria cinerea ATCC 14685] Length = 366 Score = 303 bits (776), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 151/333 (45%), Positives = 218/333 (65%), Gaps = 16/333 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ G ++F M+D+++ +R+ LN+ SI P+++ + S DGTRKWLL Sbjct: 25 FRAKQVMRWIHQSGAQNFGEMTDLAKSLRYKLNEQASIDIPKLMMSQESSDGTRKWLLD- 83 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE RGTLC+SSQVGC+L C+FC TG Q RNL+A EI+ Q+ Sbjct: 84 ----VGTGNGVETVFIPESERGTLCISSQVGCALECTFCSTGRQGFNRNLSAAEIIGQLW 139 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A +G V P R ISN+VMMGMGEP+ NF+NV +LSI D G Sbjct: 140 WANKAMG-----------VTPKNERVISNVVMMGMGEPMANFENVVTALSIMLDDHGYGL 188 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+T+STSG VP + ++ + + V LA+SLHA ++++RN +VP+N+KYPL+ L+ AC+ Sbjct: 189 SRRRVTVSTSGMVPQMDKLRDTMPVALAVSLHASNDEVRNKIVPLNKKYPLKELMAACQR 248 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + ITFEYVML G+ND + A LI+++K +P K NLIPFNP+P Y S+ + Sbjct: 249 YLVKAPRDFITFEYVMLDGVNDKAQHAYELIELVKDVPCKFNLIPFNPFPNSGYERSNNE 308 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +I F + ++++G+ +R RG DI AACGQL Sbjct: 309 NIRIFIDILQQAGFVVTVRKTRGDDIDAACGQL 341 >gi|225075197|ref|ZP_03718396.1| hypothetical protein NEIFLAOT_00197 [Neisseria flavescens NRL30031/H210] gi|224953372|gb|EEG34581.1| hypothetical protein NEIFLAOT_00197 [Neisseria flavescens NRL30031/H210] Length = 398 Score = 303 bits (776), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 155/346 (44%), Positives = 220/346 (63%), Gaps = 21/346 (6%) Query: 25 GIPQRHVRM-----RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEK 79 G+ Q M R Q+ +W++ G ++F+ M+D+++ +R LN+ +I P+++ + Sbjct: 48 GLTQHFAEMGEKPFRAKQVMRWMHQAGAQNFEEMTDLAKSLRAKLNEQATIEVPKLMMAQ 107 Query: 80 ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV 139 S DGTRKWLL +G +ETV+IPE RGTLC+SSQVGC+L C+FC TG Q Sbjct: 108 ESTDGTRKWLLD-----VGTGNGVETVFIPEAERGTLCISSQVGCALECTFCSTGRQGFN 162 Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199 RNLTA EI+ Q+ A +G V P R ISN+VMMGMGEP+ NFDNV Sbjct: 163 RNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMMGMGEPMANFDNVVT 211 Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINR 259 +LSI D G S+RR+T+STSG VP + R+ + + V LA+SLHA ++++R+ +VP+N+ Sbjct: 212 ALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDAMPVALAVSLHASNDEVRDQIVPLNK 271 Query: 260 KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFN 319 KYPL+ L+ AC+ Y + ITFEYVML GIND + A LI+++K +P K NLIPFN Sbjct: 272 KYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIELVKDVPCKFNLIPFN 331 Query: 320 PWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 P+P Y S ++I F + +++ G+ +R RG DI AACGQL Sbjct: 332 PFPNSGYERSTNENIRVFRDILQQVGFVVTVRKTRGDDIDAACGQL 377 >gi|311694381|gb|ADP97254.1| conserved hypothetical protein [marine bacterium HP15] Length = 370 Score = 303 bits (776), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 159/362 (43%), Positives = 223/362 (61%), Gaps = 20/362 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+GM + +LE +G R R +Q+ +WI+ RG DF M+++S+ +R L Sbjct: 6 EKTNLLGMPKAKLEAFFESLG----EKRFRATQVLQWIHQRGADDFDQMTNMSKALREKL 61 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q I PE+V ++ S DGTRKW++R + +ETV IP+ RGTLCVSSQ+GC Sbjct: 62 KQVAEIRGPEVVYDETSKDGTRKWVMR-----MDNGNSVETVLIPDGERGTLCVSSQIGC 116 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 SL C+FC TG + RNLTA E++ QV +AR F P R I+N+VM Sbjct: 117 SLDCTFCSTGKRGFNRNLTAAEVIGQVWVARKAFMPFE----------PGPDRPITNVVM 166 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV ++++ + + SKRR+TLSTSG VP + R+ E V LAISLH Sbjct: 167 MGMGEPLLNFDNVVDAMNLMMEDLAYGISKRRVTLSTSGVVPALDRLSEVTDVSLAISLH 226 Query: 245 AVSNDLRNILVPINRKYPL-EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 A +++LRN LVP+N+KYP+ E+L R++ L + R+ T EY +++G+ND P A L Sbjct: 227 APNDELRNKLVPLNKKYPISELLAATKRYFARLPDKRKATIEYTVIEGMNDQPEHARELA 286 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +L+ +P KINLIPFNP+P ++ F + +GY + IRT RG DI AACG Sbjct: 287 VLLRDLPCKINLIPFNPFPESDFRRPSMNATRRFQNVLNEAGYITTIRTTRGDDIDAACG 346 Query: 364 QL 365 QL Sbjct: 347 QL 348 >gi|88812659|ref|ZP_01127906.1| hypothetical protein NB231_00700 [Nitrococcus mobilis Nb-231] gi|88790075|gb|EAR21195.1| hypothetical protein NB231_00700 [Nitrococcus mobilis Nb-231] Length = 378 Score = 303 bits (776), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 159/360 (44%), Positives = 220/360 (61%), Gaps = 21/360 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ R+ L+E L ++G P R Q+ KWI+ R + DF M+D+ + +R L Sbjct: 17 KANLLNFDRQALQEWLAQLGEPP----FRAVQLIKWIHQRRVFDFDRMTDLGKPLRARLA 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I P V ++ S DG RKWLL + G IETV+IPE RGTLCVSSQ+GC Sbjct: 73 EIAEIRLPSAVFDRTSADGVRKWLL-----TLDGDNAIETVFIPEPGRGTLCVSSQLGCP 127 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC TG Q RNLTA EI+ Q+L + + V +++N+V M Sbjct: 128 LACTFCSTGQQGFNRNLTAAEIVGQLLFV------------TQALAADGVAGRVTNVVFM 175 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF +V K+ ++ D + S+RR+TLSTSG VP + R+ E + LA+SLHA Sbjct: 176 GMGEPLANFASVLKASNLMVDEHAYNLSRRRVTLSTSGIVPALYRLAEVSRISLAVSLHA 235 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + LR+ LVPINRKYP+ L+ ACR+Y + RIT+EYVML +ND+ A L ++ Sbjct: 236 PDDALRDELVPINRKYPIAELLAACRNYVECTPHHRITWEYVMLDAVNDTDGHAQALARL 295 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG+P+KINLIPFN +PG Y S + + F+E ++R+GY + +R RG DI ACGQL Sbjct: 296 LKGVPSKINLIPFNAFPGAPYRSSPPQRVARFTEILQRAGYITTVRKTRGDDIDGACGQL 355 >gi|330790726|ref|XP_003283447.1| hypothetical protein DICPUDRAFT_25816 [Dictyostelium purpureum] gi|325086712|gb|EGC40098.1| hypothetical protein DICPUDRAFT_25816 [Dictyostelium purpureum] Length = 390 Score = 303 bits (775), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 156/358 (43%), Positives = 230/358 (64%), Gaps = 22/358 (6%) Query: 11 GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70 G+ + +L E K+ P+ V Q+WK +Y +GI + + IS+E + ++ ++F + Sbjct: 54 GLPKLDLIEKFEKLNFPKYSV----DQVWKLMYNKGIDQIKDFNLISKERKSIMEENFKL 109 Query: 71 IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130 I ++S DGTRK+L+ F E+E+V+IPE SRGTLCVSSQVGC+ C+F Sbjct: 110 DTGTITKHQLSVDGTRKFLISFDGD------EVESVFIPESSRGTLCVSSQVGCTFACTF 163 Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 C+TGTQK RNLTA EI+ QV+ AR LL DF E+ R ++NIV MG GEP Sbjct: 164 CFTGTQKFKRNLTANEIVAQVVAARKLLNDFNASEE----------RLLTNIVFMGQGEP 213 Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSND 249 N+ NVKK++SI +DS GL+ K +IT+STSG VP I R+G + G+ LAISLH+ +++ Sbjct: 214 FYNYRNVKKAISIITDSNGLAIGKSKITVSTSGVVPIIERLGTDFPGIGLAISLHSPNDE 273 Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309 +R+ +V NR++P+E L+ +C + + + RIT EYV L+ ++D+ +DAL+LI + K Sbjct: 274 VRSKIVTANRQWPIEELVQSCIKFSKTTKS-RITLEYVPLQDVHDTEQDALDLIPLCKRF 332 Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 P+ +N+IPFNPWPG + S I F+ ++ + + IR RG DI+AACGQLKS Sbjct: 333 PSLVNIIPFNPWPGSPHESSTNNQIQIFANILESNNVKTTIRQSRGRDIMAACGQLKS 390 >gi|149375014|ref|ZP_01892787.1| predicted Fe-S-cluster redox enzyme [Marinobacter algicola DG893] gi|149360903|gb|EDM49354.1| predicted Fe-S-cluster redox enzyme [Marinobacter algicola DG893] Length = 370 Score = 303 bits (775), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 160/379 (42%), Positives = 231/379 (60%), Gaps = 20/379 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+GM + ++E +G R R +Q+ +WI+ RG DF M+++S+ +R L Sbjct: 6 EKTNLLGMPKAKMEAFFESLG----EKRFRATQVLQWIHQRGADDFDQMTNMSKVLREKL 61 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+V ++ S DGTRKW++R + +ETV IP+ RGTLCVSSQ+GC Sbjct: 62 KAVAEIRGPEVVYDESSKDGTRKWVMR-----MDNGNSVETVLIPDGERGTLCVSSQIGC 116 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 SL C+FC TG + RNLTA EI+ QV +AR F P R I+N+VM Sbjct: 117 SLDCTFCSTGKRGFNRNLTAAEIIGQVWVARKAFMPFE----------PGPDRPITNVVM 166 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV ++++ + + SKRR+T+STSG VP + ++GE V LAISLH Sbjct: 167 MGMGEPLLNFDNVVDAMNLMMEDLAYGISKRRVTVSTSGVVPALDKLGEVTDVSLAISLH 226 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALNLI 303 A +++LRN LVP+N+KYP+ L+ A R Y L + R+ T EY +++G+ND P A L Sbjct: 227 APNDELRNQLVPLNKKYPIAELLAATRRYLARLPDKRKATIEYTVIEGVNDQPEHARELA 286 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +L+G+P KINLIPFNP+P ++ F + +GY + +RT RG DI AACG Sbjct: 287 VVLRGLPCKINLIPFNPFPESDFRRPSMNATRRFQSVLNEAGYIATVRTTRGDDIDAACG 346 Query: 364 QLKSLSKRIPKVPRQEMQI 382 QL + + K ++ +Q+ Sbjct: 347 QLVGMVEDRTKRSQRYIQV 365 >gi|126668577|ref|ZP_01739531.1| predicted Fe-S-cluster redox enzyme [Marinobacter sp. ELB17] gi|126626982|gb|EAZ97625.1| predicted Fe-S-cluster redox enzyme [Marinobacter sp. ELB17] Length = 370 Score = 302 bits (774), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 159/362 (43%), Positives = 222/362 (61%), Gaps = 20/362 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+GM + +LE +G R R +Q+ +W++ RG+ DF M+++S+ +R L Sbjct: 6 EKTNLLGMPKAKLEAYFESLG----EKRFRATQVLQWVHQRGVGDFDEMTNMSKPLRDKL 61 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + PE+V ++++ DGTRKW++R + IETV IP+ RGTLCVSSQ+GC Sbjct: 62 KLIAEVRGPEVVYDELAKDGTRKWVMR-----MDNGNNIETVLIPDGERGTLCVSSQIGC 116 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 SL CSFC TG + RNLT+ EI+ QV AR + P R I+N+VM Sbjct: 117 SLDCSFCSTGKRGFNRNLTSAEIIGQVWAARKTFMPY----------APGPDRPITNVVM 166 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV ++++ + + SKRR+TLSTSG VP I ++GE V LAISLH Sbjct: 167 MGMGEPLLNFDNVVDAMNLMMEDLAYGISKRRVTLSTSGVVPAIDKLGEVTDVSLAISLH 226 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLI 303 A +++LRN LVPIN+KYP+ L+ A R Y L + R+ T EY ++ G+ND A L Sbjct: 227 AANDELRNQLVPINKKYPIAELLAATRRYLSRLPDKRKATIEYTLMAGVNDHVDQARELA 286 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++L+G+P KINLIPFNP+P Y F + +GY + +R PRG DI AACG Sbjct: 287 EVLRGLPCKINLIPFNPFPESGYERPSMNATRRFQTVLNEAGYIATVRMPRGDDIDAACG 346 Query: 364 QL 365 QL Sbjct: 347 QL 348 >gi|332971507|gb|EGK10457.1| cfr family radical SAM enzyme [Kingella kingae ATCC 23330] Length = 364 Score = 302 bits (773), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 158/347 (45%), Positives = 213/347 (61%), Gaps = 18/347 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ G +F+ M+D+++ +R L Q + P ++ + S DGTRKWLL Sbjct: 25 FRAKQVMRWIHQGGAENFEQMTDLAKSLRAKLEQQAEVGIPALMTSQESKDGTRKWLLD- 83 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE RGTLC+SSQVGC+L C+FC TG Q RNL+A EI+ Q+ Sbjct: 84 ----VGTGNGVETVFIPETERGTLCISSQVGCALECTFCSTGRQGFNRNLSAAEIIGQLW 139 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A LG V P R ISN+VMMGMGEPL N+DNV +LSI D G Sbjct: 140 WANKALG-----------VTPKNERVISNVVMMGMGEPLANYDNVITALSIMLDDHGYGL 188 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+T+STSG VP + R+ E++ V LA+SLHA ++ +R+ +VP+N+KYPL+ L+ AC Sbjct: 189 SRRRVTVSTSGMVPQMDRLKEDMPVALAVSLHASNDKVRDEIVPLNKKYPLKELMAACNR 248 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + ITFEYVML G+ND P A L++++K P K NLIPFNP+P Y S K Sbjct: 249 YLVKAPRDFITFEYVMLDGVNDKPEHARELVELVKDTPCKFNLIPFNPFPNSGYERSSNK 308 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQE 379 +I F E + + + +R RG DI AACGQL K K RQE Sbjct: 309 NINIFKEILMEADLVTTVRKTRGDDIDAACGQLAGQVK--DKTKRQE 353 >gi|262371087|ref|ZP_06064409.1| cfr family radical SAM enzyme [Acinetobacter johnsonii SH046] gi|262313973|gb|EEY95018.1| cfr family radical SAM enzyme [Acinetobacter johnsonii SH046] Length = 411 Score = 302 bits (773), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 169/373 (45%), Positives = 228/373 (61%), Gaps = 25/373 (6%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 N + K +L+GM R +LE+ +G + R Q+ KWI+ + DF M++IS ++R Sbjct: 26 NSVAKVNLLGMSRPQLEKFFEDMG----EKKFRAGQVMKWIHQFFVTDFAEMTNISGKLR 81 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG----TLC 117 L + I PE+V + S DGTRKW+ R G +ETV IP + R TLC Sbjct: 82 EKLEKLCEIKAPEVVHKNYSKDGTRKWVFRVGE---GEGSLVETVLIPAEHRSGLRRTLC 138 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR-SLLGDFPGCEDIEGMVIPSVG 176 +SSQVGC+L CSFC TG Q R+L +EI+ Q+ +A S + D P E Sbjct: 139 ISSQVGCALDCSFCSTGKQGFQRDLNPDEIIGQLWVANYSYMEDVPVAER---------E 189 Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236 R ++N+VMMGMGEPL N+D V S+ I D SKRR+TLSTSG VP I ++ ++I Sbjct: 190 RSVTNVVMMGMGEPLLNYDAVLSSMRIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDID 249 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY---PGLSNARR-ITFEYVMLKGI 292 V LAISLHA +++LRN LVPIN+KYPL LI AC+ Y G +AR+ +T EYVML G+ Sbjct: 250 VALAISLHAPNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESARKHVTIEYVMLDGV 309 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 ND P A +IK+LK +P+KINLIPFNP+P Y S + I++F + + +G+ IR Sbjct: 310 NDHPEHAQQMIKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQ 369 Query: 353 PRGLDILAACGQL 365 RG DI AACGQL Sbjct: 370 TRGDDIDAACGQL 382 >gi|262374935|ref|ZP_06068169.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter lwoffii SH145] gi|262309948|gb|EEY91077.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter lwoffii SH145] Length = 411 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 168/373 (45%), Positives = 228/373 (61%), Gaps = 25/373 (6%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 N ++K +L+GM R ++E+ +G + R Q+ KWI+ + DF M++IS ++R Sbjct: 26 NTVEKVNLLGMSRPQMEKFFEDMG----EKKFRAGQVMKWIHQFFVTDFAEMTNISGKLR 81 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG----TLC 117 L + I PE+V + S DGTRKW+ R G +ETV IP + R TLC Sbjct: 82 EKLEKICEIKAPEVVHKNYSKDGTRKWVFRVGD---GEGSLVETVLIPAEHRSGLRRTLC 138 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR-SLLGDFPGCEDIEGMVIPSVG 176 +SSQVGC+L CSFC TG Q R+LT EI+ Q+ +A S + D P E Sbjct: 139 ISSQVGCALDCSFCSTGKQGFQRDLTQAEIIGQLWMANYSYMEDVPVLER---------E 189 Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236 R ++N+VMMGMGEPL N+D V S+ I D SKRR+TLSTSG VP I ++ ++I Sbjct: 190 RSVTNVVMMGMGEPLLNYDAVLNSMRIMLDDFAYGMSKRRVTLSTSGVVPKIDQMVKDID 249 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY----PGLSNARRITFEYVMLKGI 292 V LAISLHA +++LRN LVPIN+KYPLE LI AC+ Y S+ + +T EYVML G+ Sbjct: 250 VALAISLHAPNDELRNELVPINKKYPLEQLIAACQRYIAKDGNESSRKHVTIEYVMLDGV 309 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 ND P A +IK+LK +P+KINLIPFNP+P Y S + I++F + + +G+ IR Sbjct: 310 NDHPEHAQQMIKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQ 369 Query: 353 PRGLDILAACGQL 365 RG DI AACGQL Sbjct: 370 TRGDDIDAACGQL 382 >gi|255067157|ref|ZP_05319012.1| radical SAM enzyme, Cfr family [Neisseria sicca ATCC 29256] gi|255048525|gb|EET43989.1| radical SAM enzyme, Cfr family [Neisseria sicca ATCC 29256] Length = 364 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 151/333 (45%), Positives = 215/333 (64%), Gaps = 16/333 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ G + F M+D+++ +R LN+ S+ P+++ + S DGTRKWLL Sbjct: 25 FRAKQVMRWIHQAGAQSFDEMTDLAKSLRLKLNEQASVDVPKLMMAQESTDGTRKWLLD- 83 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE RGTLC+SSQVGC+L C+FC TG Q RNLTA EI+ Q+ Sbjct: 84 ----VGTGNGVETVFIPEAERGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLW 139 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A +G V P R ISN+VMMGMGEP+ NF+NV +LSI D G Sbjct: 140 WANKAMG-----------VTPKNERVISNVVMMGMGEPMANFENVVTALSIMLDDHGYGL 188 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+T+STSG VP + R+ + + V LA+SLHA ++++R+ +VP+N+KYPL+ L+ AC+ Sbjct: 189 SRRRVTVSTSGMVPQMDRLRDAMPVALAVSLHASNDEVRDQIVPLNKKYPLKELMAACQR 248 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + ITFEYVML G+ND + A LI+++K +P K NLIPFNP+P Y S + Sbjct: 249 YLVKAPRDFITFEYVMLDGVNDKAQHARELIELVKDVPCKFNLIPFNPFPNSGYERSTNE 308 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +I F + ++++G+ +R RG DI AACGQL Sbjct: 309 NIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341 >gi|34498996|ref|NP_903211.1| hypothetical protein CV_3541 [Chromobacterium violaceum ATCC 12472] gi|81654669|sp|Q7NS85|RLMN_CHRVO RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|34104846|gb|AAQ61203.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 364 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 156/360 (43%), Positives = 216/360 (60%), Gaps = 20/360 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ ++L + ++G R Q+ +W++ DF M+D+++ +R L+ Sbjct: 2 KTNLLDFNLDQLTQHFAEMG----EKPFRAKQVMRWMHQMAEDDFDAMTDLAKSLRAKLH 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + P ++ + S DGTRKWLL +G +ETV+IPE RGTLCVSSQVGC+ Sbjct: 58 ERAEVRVPSLMTGQASSDGTRKWLLD-----VGTGNGVETVFIPEDDRGTLCVSSQVGCA 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC TG Q RNL+ EI+ Q+ A +G V P R +SN+VMM Sbjct: 113 LECTFCSTGRQGFNRNLSTAEIIGQLWWANKAMG-----------VTPKNERVVSNVVMM 161 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ I D G S+RR+TLSTSG VP + R+ EE V LA+SLHA Sbjct: 162 GMGEPLANFDNVVSAMQIMLDDHGYGLSRRRVTLSTSGLVPQMDRLREECPVALAVSLHA 221 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ +R+++VPIN+KYPL L+ ACR Y + ITFEYVML G+ND P A L+++ Sbjct: 222 PNDAIRDVIVPINKKYPLSELMAACRRYLEKAPRDFITFEYVMLDGVNDRPEHARQLLEL 281 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 ++ +P K NLIPFNP+P Y S I F E ++ GY +R RG DI AACGQL Sbjct: 282 VRDVPCKFNLIPFNPFPNSGYDRSSNNAIRIFREILQEQGYVVTVRKTRGDDIDAACGQL 341 >gi|146283364|ref|YP_001173517.1| radical SAM protein [Pseudomonas stutzeri A1501] gi|145571569|gb|ABP80675.1| radical SAM enzyme, Cfr family [Pseudomonas stutzeri A1501] Length = 347 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 157/327 (48%), Positives = 202/327 (61%), Gaps = 16/327 (4%) Query: 40 KWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG 99 KWI+ G+ DF MS++ + +R L I PEIV E IS DGTRKW++R + Sbjct: 2 KWIHHFGVDDFDAMSNLGKALREKLKACAEIRGPEIVSEDISSDGTRKWVVRVASGSC-- 59 Query: 100 PVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLG 159 +ETVYIP+ RGTLCVSSQ GC+L CSFC TG Q NLTA E++ QV +A G Sbjct: 60 ---VETVYIPQGGRGTLCVSSQAGCALDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFG 116 Query: 160 DFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITL 219 P + R I+N+VMMGMGEPL NFDNV ++ I D +G SKR++TL Sbjct: 117 TVPA----------KIDRAITNVVMMGMGEPLLNFDNVVAAMQIMMDDLGYGISKRKVTL 166 Query: 220 STSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG-LSN 278 STSG VP I + + I V LA+SLHA + LR+ LVPIN+KYPL++L+ AC+ Y L Sbjct: 167 STSGVVPMIDELAKVIDVSLALSLHAPNEALRDQLVPINKKYPLDVLLAACKRYVSRLGE 226 Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFS 338 R +T EY +LKG+ND P A +I +L IP KINLIPFNP+P Y I F Sbjct: 227 KRVLTIEYTLLKGVNDQPEHAEQMIALLADIPCKINLIPFNPFPHSGYERPSNNAIRRFQ 286 Query: 339 ECIKRSGYSSPIRTPRGLDILAACGQL 365 + + + G++ +RT RG DI AACGQL Sbjct: 287 DILHKGGHNVTVRTTRGEDIDAACGQL 313 >gi|294789305|ref|ZP_06754543.1| radical SAM enzyme, Cfr family [Simonsiella muelleri ATCC 29453] gi|294482730|gb|EFG30419.1| radical SAM enzyme, Cfr family [Simonsiella muelleri ATCC 29453] Length = 363 Score = 301 bits (770), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 157/347 (45%), Positives = 212/347 (61%), Gaps = 18/347 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ G +F M+D+++ +R LN + + P ++ + S DGTRKWLL Sbjct: 25 FRAKQVMRWIHQSGAENFDQMTDLAKSLRAKLNDNAQVGIPALITSQESKDGTRKWLLD- 83 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE RGTLC+SSQVGC+L C+FC TG Q RNL+ EI+ Q+ Sbjct: 84 ----VGTGNGVETVFIPETERGTLCISSQVGCALECTFCSTGRQGFNRNLSTAEIIGQLW 139 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A LG V P R ISN+VMMGMGEPL N+DNV +LSI D G Sbjct: 140 WANKALG-----------VTPKNERVISNVVMMGMGEPLANYDNVINALSIMLDDHGYGL 188 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+T+STSG VP + R+ E++ V LA+SLHA ++ +R+ +VP+N+KYPL+ L+ AC Sbjct: 189 SRRRVTVSTSGMVPQMDRLKEDMPVALAVSLHASNDQVRDKIVPLNKKYPLKELMAACNR 248 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + ITFEYVML GIND P A L++++K P K NLIPFNP+P Y S K Sbjct: 249 YLMKAPRDFITFEYVMLDGINDKPEHAHELVQLVKDTPCKFNLIPFNPFPNSGYERSSNK 308 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQE 379 +I F E + + + +R RG DI AACGQL + K RQE Sbjct: 309 NINIFKEILMEADLVTTVRKTRGDDIDAACGQLAGQVQ--DKTKRQE 353 >gi|292491212|ref|YP_003526651.1| radical SAM protein [Nitrosococcus halophilus Nc4] gi|291579807|gb|ADE14264.1| radical SAM enzyme, Cfr family [Nitrosococcus halophilus Nc4] Length = 372 Score = 301 bits (770), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 163/358 (45%), Positives = 220/358 (61%), Gaps = 20/358 (5%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L+ + R LE ++G R Q+ +W++ + + DF M+D+S+ +R L + Sbjct: 8 NLLNLDRVGLEAFFARLG----EKPFRARQMLRWLHQQFVTDFSAMTDLSKSLRARLAET 63 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 I PE+V + S DGT KWLLR + G IETV+IPE+ RGTLCVSSQVGC L Sbjct: 64 AVIALPEVVHQHHSTDGTYKWLLR-----VSGGNCIETVFIPEEDRGTLCVSSQVGCILD 118 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 CSFC TG Q RNL EI+ Q+ LA LG P E I I+N+VMMGM Sbjct: 119 CSFCATGKQGFNRNLGVSEIIGQLWLANKALGRDPKGERI-----------ITNVVMMGM 167 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL NF+NV ++++ D S RR+TLST+G VP + R+ V LA+SLHA + Sbjct: 168 GEPLANFNNVVAAMNLMLDDFSYGLSWRRVTLSTAGMVPAMDRLRAICPVSLAVSLHAPT 227 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 ++LR+ LVP+N++YP+ L+ ACR Y R +TFEYVML G+NDS + A L+++L+ Sbjct: 228 DELRDELVPLNKRYPIGELLAACRRYVAGDRRRAVTFEYVMLAGVNDSLQHARALLRLLQ 287 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 G+PAK+NLIPFNP+PG Y SD + I F E + R G + R RG DI AACGQL Sbjct: 288 GLPAKVNLIPFNPFPGSLYRRSDTETIDRFREELLRGGLMTVTRKTRGDDIAAACGQL 345 >gi|224826446|ref|ZP_03699548.1| radical SAM enzyme, Cfr family [Lutiella nitroferrum 2002] gi|224601547|gb|EEG07728.1| radical SAM enzyme, Cfr family [Lutiella nitroferrum 2002] Length = 364 Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 153/333 (45%), Positives = 207/333 (62%), Gaps = 16/333 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +W++ G DF M+DI++ +R L++ + P+++ E+ S DGTRKWLL Sbjct: 25 FRAKQVMRWMHQMGEADFDAMTDIAKSLRCKLHESAEVRVPDLMVEQASSDGTRKWLLD- 83 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE RGTLC+SSQVGC+L C+FC TG Q RNL+ EI+ Q+ Sbjct: 84 ----VGTGNGVETVFIPEDDRGTLCISSQVGCALECTFCSTGRQGFNRNLSTAEIIGQLW 139 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A +G V P R ISN+VMMGMGEPL NFDNV +L I D G Sbjct: 140 WANKAMG-----------VTPKNERVISNVVMMGMGEPLANFDNVVSALQIMLDDHGYGL 188 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+T+STSG VP + R+ E V LA+SLHA ++ +R+++VPIN+KYPL L+ AC+ Sbjct: 189 SRRRVTVSTSGMVPQMDRLREACPVALAVSLHAPNDAIRDVIVPINKKYPLRELMAACQR 248 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + +TFEYVML +ND P A LI+++K +P K NLIPFNP+P Y S Sbjct: 249 YLEKAPRDFVTFEYVMLDDVNDRPEHARQLIELVKDVPCKFNLIPFNPFPNSGYERSSNN 308 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F E ++ +GY +R RG DI AACGQL Sbjct: 309 AIHRFREILQEAGYVVTVRKTRGDDIDAACGQL 341 >gi|119476380|ref|ZP_01616731.1| predicted Fe-S-cluster redox enzyme [marine gamma proteobacterium HTCC2143] gi|119450244|gb|EAW31479.1| predicted Fe-S-cluster redox enzyme [marine gamma proteobacterium HTCC2143] Length = 386 Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 170/382 (44%), Positives = 231/382 (60%), Gaps = 22/382 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+G+ RE++E + +G R Q+ KWI+ +G+ +F M++IS+ +R L Sbjct: 16 EKTNLLGLSREKMEAFCVSLG----EKPFRAQQLLKWIHHQGVDNFDAMTNISKALRSRL 71 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q I PEIV + S DGTRKW +R I G +ETV IP+ RGTLCVSSQVGC Sbjct: 72 IQCAEIRPPEIVSQNDSVDGTRKWAIR-----IAGGGLVETVLIPDGDRGTLCVSSQVGC 126 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 SL CSFC TG Q R+L+A EI+ QV LA + FP R I+N+VM Sbjct: 127 SLDCSFCSTGKQGFQRDLSAAEIIGQVWLAINSYDAFPSTNK----------RIITNVVM 176 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV +S+S+ D G SKRR+TLSTSG VP + ++G+ V LAISLH Sbjct: 177 MGMGEPLLNFDNVVQSMSLMMDDFGYGISKRRVTLSTSGVVPALDKLGDVSEVSLAISLH 236 Query: 245 AVSNDLRNILVPINRKYPLEMLIDAC-RHYPGLSNARRI-TFEYVMLKGINDSPRDALNL 302 A +++LR+ LVPIN+KYP+ L+ AC R++ ++ R+ T EY ++ G+NDS A L Sbjct: 237 APNDELRSQLVPINKKYPIAELLAACGRYWAKQTDTHRVTTVEYTLIAGVNDSREHAKEL 296 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K+LK P KINLIPFNP+ +Y +K I F + + S + +R RG DI AAC Sbjct: 297 AKLLKDFPCKINLIPFNPFSLSDYQRPSKKTIDQFWQVLSNSSIVTTVRNTRGDDIDAAC 356 Query: 363 GQL-KSLSKRIPKVPRQEMQIT 383 GQL ++ R + R T Sbjct: 357 GQLVGQVADRTKRSERHRTNYT 378 >gi|91792611|ref|YP_562262.1| hypothetical protein Sden_1253 [Shewanella denitrificans OS217] gi|123356968|sp|Q12PT7|RLMN_SHEDO RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|91714613|gb|ABE54539.1| conserved hypothetical protein [Shewanella denitrificans OS217] Length = 373 Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 170/385 (44%), Positives = 227/385 (58%), Gaps = 25/385 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+ L ++G R Q+ KWIY G+ DF+ M++I++ +R L Sbjct: 4 KKINLLDLDRKGLRALFTEMG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRSKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I+ PEI + S DGT K+ + +G E+ETVYIPE R TLCVSSQVGC Sbjct: 60 AERCVIVAPEIASFQKSADGTIKFAIN-----VGQGQEVETVYIPEDDRATLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC TG Q RNLT EI+ Q+ LG V + R I+N+VM Sbjct: 115 ALECTFCSTGQQGFNRNLTVSEIVGQIWRVAQFLG----------FVKTTGERPITNVVM 164 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + +G+ I V LA+S+H Sbjct: 165 MGMGEPLLNLKNVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDILGDSIDVALAVSIH 224 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ILVP+N+KYPL + R Y SNA R+T EYVML INDS A L Sbjct: 225 APNDELRDILVPVNKKYPLAEFLGGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHEL 284 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K++K P K+NLIPFNP+PG Y S I FS+ + G++ +R RG DI AAC Sbjct: 285 AKLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAAC 344 Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383 GQL + +KR+ K QE QI+ Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369 >gi|329120380|ref|ZP_08249047.1| cfr family radical SAM enzyme [Neisseria bacilliformis ATCC BAA-1200] gi|327462335|gb|EGF08661.1| cfr family radical SAM enzyme [Neisseria bacilliformis ATCC BAA-1200] Length = 362 Score = 300 bits (768), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 155/347 (44%), Positives = 217/347 (62%), Gaps = 18/347 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +W++ G DF M+D+++ +R L +H + P ++ + S DGTRKWLL Sbjct: 25 FRAKQVMRWMHWGGAADFAEMTDLAKSLRAKLEEHACVGAPALMASQESRDGTRKWLLD- 83 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE RGTLC+SSQVGC+L C+FC TG Q RNLT EI+ Q+ Sbjct: 84 ----VGTGNGVETVFIPESERGTLCISSQVGCALECTFCSTGRQGFNRNLTTAEIVGQLW 139 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A LG P E R ISN+VMMGMGEPL N+DNV +SLS+ D G Sbjct: 140 WANKALGATPKDE-----------RVISNVVMMGMGEPLANYDNVVRSLSVMLDDHGYGL 188 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+T+STSG VP + R+ E++ V LA+SLHA ++ +R+ +VP+N+KYPL+ L+ ACR Sbjct: 189 SRRRVTVSTSGMVPQMDRLKEDMPVALAVSLHASNDHVRDQIVPLNKKYPLKDLMAACRR 248 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + +TFEYVML G+ND A L+K+++ +P K NLIPFNP+P Y S + Sbjct: 249 YLVKAPRDFVTFEYVMLDGVNDKAEHARELLKLVEDVPCKFNLIPFNPFPHSGYERSSAE 308 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQE 379 +I F + ++++G+ +R RG DI AACGQL K K RQ+ Sbjct: 309 NIRIFRDILQQAGFVVTVRKTRGDDIDAACGQLAGQVK--DKTRRQQ 353 >gi|160876257|ref|YP_001555573.1| ribosomal RNA large subunit methyltransferase N [Shewanella baltica OS195] gi|217972550|ref|YP_002357301.1| ribosomal RNA large subunit methyltransferase N [Shewanella baltica OS223] gi|304410038|ref|ZP_07391657.1| radical SAM enzyme, Cfr family [Shewanella baltica OS183] gi|307302249|ref|ZP_07582007.1| radical SAM enzyme, Cfr family [Shewanella baltica BA175] gi|205829880|sp|A9KXL1|RLMN_SHEB9 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807210|sp|B8E9S4|RLMN_SHEB2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|160861779|gb|ABX50313.1| radical SAM enzyme, Cfr family [Shewanella baltica OS195] gi|217497685|gb|ACK45878.1| radical SAM enzyme, Cfr family [Shewanella baltica OS223] gi|304351447|gb|EFM15846.1| radical SAM enzyme, Cfr family [Shewanella baltica OS183] gi|306914287|gb|EFN44708.1| radical SAM enzyme, Cfr family [Shewanella baltica BA175] gi|315268446|gb|ADT95299.1| radical SAM enzyme, Cfr family [Shewanella baltica OS678] Length = 373 Score = 300 bits (767), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 168/385 (43%), Positives = 226/385 (58%), Gaps = 25/385 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+ + +G R Q+ KW+Y G+ DF+ M++I++ +R L Sbjct: 4 KKINLLDLDRKAMRALFADMG----EKPFRADQLMKWLYHFGVSDFEEMTNINKVLRQKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I+ PEI + S DGT K+ + +G E+ETVYIPE R TLCVSSQVGC Sbjct: 60 AARCEIVAPEISSFQKSTDGTIKFAIN-----VGQGQEVETVYIPEDDRATLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC TG Q RNLT EI+ Q+ LG + R I+N+VM Sbjct: 115 ALECTFCSTGQQGFNRNLTVSEIVGQIWRVSHFLG----------FAKDTGERPITNVVM 164 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + ++G+ I V LA+S+H Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDAIDVALAVSIH 224 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ILVPIN+KYPL+ + R Y SNA R+T EYVML INDS A L Sbjct: 225 APNDELRDILVPINKKYPLDEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHEL 284 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K++K P K+NLIPFNP+PG Y S I FS+ + G++ +R RG DI AAC Sbjct: 285 AKLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAAC 344 Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383 GQL + +KR+ K QE QI+ Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369 >gi|304415499|ref|ZP_07396137.1| hypothetical protein in radical SAM superfamily [Candidatus Regiella insecticola LSR1] gi|304282648|gb|EFL91173.1| hypothetical protein in radical SAM superfamily [Candidatus Regiella insecticola LSR1] Length = 378 Score = 300 bits (767), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 168/381 (44%), Positives = 227/381 (59%), Gaps = 33/381 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R++L +++G R Q+ KWIY DF+ MSDI++ +R L Sbjct: 10 KVNLLDLNRQQLRHFFIEMG----EKPFRADQVMKWIYHYCYDDFEQMSDINKVLRTKLQ 65 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 Q I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC+ Sbjct: 66 QIAEIRAPEVAQEQRSADGTIKWAIKV------GDQQVETVYIPEADRATLCVSSQVGCA 119 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVM 184 L C+FC T Q RNL EI+ QV A ++G + S GR+ I+N+VM Sbjct: 120 LECTFCSTAQQGFSRNLRVAEIIGQVWRAAKIIGS-----------LKSSGRRPITNVVM 168 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 169 MGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 228 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++++R+ +VPINRKY ++ + A R Y SNA R+T EYVML INDSP A L Sbjct: 229 APTDEIRDEIVPINRKYNIDTFLAAVRRYLAKSNANQGRVTVEYVMLDHINDSPEQAHQL 288 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + LK P KINLIP+NP+PG Y S + FS+ + + G+++ +R RG DI AAC Sbjct: 289 AECLKNTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLIQYGFTTIVRKTRGDDIDAAC 348 Query: 363 GQL---------KSLSKRIPK 374 GQL ++L KRI K Sbjct: 349 GQLAGEVIDRTKRTLKKRIAK 369 >gi|88858483|ref|ZP_01133125.1| putative pyruvate formate lyase activating enzyme 2; Fe-S cluster domain [Pseudoalteromonas tunicata D2] gi|88820100|gb|EAR29913.1| putative pyruvate formate lyase activating enzyme 2; Fe-S cluster domain [Pseudoalteromonas tunicata D2] Length = 392 Score = 300 bits (767), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 167/379 (44%), Positives = 231/379 (60%), Gaps = 21/379 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + RE + E + G R Q+ KWIY G+ +F MS+I+++++ L Sbjct: 18 KKINLLDLNREGMRELFVSFG----EKPFRGDQVMKWIYHFGVDNFDEMSNINKKLKARL 73 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I+ PEI ++++ DGT K+ L + G E+ETV+IPEK R TLCVSSQVGC Sbjct: 74 ERECEIVAPEISAKQVAADGTIKYAL-----LLEGGQEVETVWIPEKERATLCVSSQVGC 128 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNL EI+ QV +DI G+ S R ++N+VM Sbjct: 129 ALECTFCSTAQQGFNRNLKVSEIIGQVWRV---------AKDI-GLYGDSTRRPVTNVVM 178 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ + D SKRR+TLSTSG VP + + E I V LAISLH Sbjct: 179 MGMGEPLLNINNVVPAMELMMDDWAFGLSKRRVTLSTSGVVPALDILKERIDVALAISLH 238 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALNLI 303 A N LR++LVPIN+KYP+E + ACR Y S A + +T EYVML GINDS A L+ Sbjct: 239 APDNALRDVLVPINKKYPIEEFLAACRRYIDGSKANKDVTVEYVMLDGINDSMEQAHQLV 298 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 + LKG P+K+NLIPFNP+PG EY S I FS+ ++ +G + +R RG DI AACG Sbjct: 299 ETLKGTPSKVNLIPFNPFPGNEYGRSSNSRIDRFSKILQAAGITCIVRRTRGDDIDAACG 358 Query: 364 QL-KSLSKRIPKVPRQEMQ 381 QL + R ++ ++++Q Sbjct: 359 QLVGDVVDRTKRLAKRQLQ 377 >gi|325265757|ref|ZP_08132444.1| cfr family radical SAM enzyme [Kingella denitrificans ATCC 33394] gi|324982740|gb|EGC18365.1| cfr family radical SAM enzyme [Kingella denitrificans ATCC 33394] Length = 364 Score = 300 bits (767), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 160/349 (45%), Positives = 215/349 (61%), Gaps = 22/349 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ G F M+D+++ +R L + + P ++ + S DGTRKWLL Sbjct: 25 FRAKQVMRWIHQGGAESFDEMTDLAKSLRAKLQEKAVVGIPVLMAAQESRDGTRKWLLD- 83 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE RGTLC+SSQVGC+L C+FC TG Q RNLTA EI+ Q+ Sbjct: 84 ----VGTGNGVETVFIPETERGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLW 139 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A LG V P R ISN+VMMGMGEP+ N+DNV +LSI D G Sbjct: 140 WANKALG-----------VTPKNERVISNVVMMGMGEPMANYDNVVTALSIMLDDHGYGL 188 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+T+STSG VP + R+ E++ V LA+SLHA ++ +R+ +VP+N+KYPL+ L+ AC Sbjct: 189 SRRRVTVSTSGMVPQMDRLKEDMPVALAVSLHASNDKVRDEIVPLNKKYPLKELMAACNR 248 Query: 273 YPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 Y L+ A R ITFEYVML G+ND P A L++++K P K NLIPFNP+P Y S Sbjct: 249 Y--LTKAPRDFITFEYVMLDGVNDKPEHAHELVQLVKDTPCKFNLIPFNPFPNSGYERSS 306 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQE 379 K+I F E + +G + +R RG DI AACGQL + K RQE Sbjct: 307 NKNINIFKEILMEAGLVTTVRKTRGDDIDAACGQLAGQVQ--DKTKRQE 353 >gi|238897947|ref|YP_002923627.1| radical SAM domain protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465705|gb|ACQ67479.1| radical SAM domain protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 393 Score = 299 bits (766), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 167/363 (46%), Positives = 220/363 (60%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ R++L + +KIG R QI KWIY DF M+DI++++R L Sbjct: 33 KKINLLDFNRQKLRDFFVKIG----EKPFRADQIMKWIYHYCYDDFSLMTDINKQLRDKL 88 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC Sbjct: 89 QKIAEIRAPEVAKEQSSSDGTIKWAIKV------GDQQVETVYIPESDRATLCVSSQVGC 142 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNL+ EI+ QV A ++G +G R I+N+VM Sbjct: 143 ALECRFCSTAQQGFNRNLSVSEIIGQVWRAAKIIGSLKS----KGQ------RPITNVVM 192 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV +++I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 193 MGMGEPLLNINNVVPAMAIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 252 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++D+RN LVPINRKY +E L+ A R Y SNA R+T EYVML +NDS + A L Sbjct: 253 APTDDIRNELVPINRKYNIETLLAAVRRYLTKSNANQGRVTIEYVMLNHVNDSLKQAHQL 312 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 LK P KINLIP+NP+PG +Y S I F++ + + +++ IR RG DI AAC Sbjct: 313 ADCLKNTPCKINLIPWNPFPGADYGRSSNSRIDRFAKVLMQYDFTTIIRKTRGNDIDAAC 372 Query: 363 GQL 365 GQL Sbjct: 373 GQL 375 >gi|153001521|ref|YP_001367202.1| ribosomal RNA large subunit methyltransferase N [Shewanella baltica OS185] gi|205829879|sp|A6WQQ0|RLMN_SHEB8 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|151366139|gb|ABS09139.1| radical SAM enzyme, Cfr family [Shewanella baltica OS185] Length = 373 Score = 299 bits (766), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 168/385 (43%), Positives = 226/385 (58%), Gaps = 25/385 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+ + +G R Q+ KW+Y G+ DF+ M++I++ +R L Sbjct: 4 KKINLLDLDRKAMRALFADMG----EKPFRADQLMKWLYHFGVSDFEEMTNINKVLRQKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I+ PEI + S DGT K+ + +G E+ETVYIPE R TLCVSSQVGC Sbjct: 60 AARCEIVAPEISSFQKSTDGTIKFAIN-----VGQGQEVETVYIPEDDRATLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC TG Q RNLT EI+ Q+ LG + R I+N+VM Sbjct: 115 ALECTFCSTGQQGFNRNLTVSEIVGQIWRVSHFLG----------FAKDTGERPITNVVM 164 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + ++G+ + V LA+S+H Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIH 224 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ILVPIN+KYPL+ + R Y SNA R+T EYVML INDS A L Sbjct: 225 APNDELRDILVPINKKYPLDEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHEL 284 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K++K P KINLIPFNP+PG Y S I FS+ + G++ +R RG DI AAC Sbjct: 285 AKLMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAAC 344 Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383 GQL + +KR+ K QE QI+ Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369 >gi|331005925|ref|ZP_08329273.1| transcriptional regulator, Crp/Fnr family [gamma proteobacterium IMCC1989] gi|330420281|gb|EGG94599.1| transcriptional regulator, Crp/Fnr family [gamma proteobacterium IMCC1989] Length = 403 Score = 298 bits (764), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 160/363 (44%), Positives = 220/363 (60%), Gaps = 21/363 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+G+ +L IG + R Q+ KWI+ G+ DF MS+IS+ +R L Sbjct: 18 EKINLLGLSTSKLTAFFESIG----EKKFRAIQVQKWIHQNGVDDFSAMSNISKPLREKL 73 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 ++ I PE++ + S DGTRK+L++ + G +ETV+IP+ RGTLCVSSQVGC Sbjct: 74 SRIAEIRAPEVIKQLDSVDGTRKFLIK-----VSGDNVVETVFIPDGDRGTLCVSSQVGC 128 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 SL CSFC TG Q R+LTA EI+ QV +A G P R ++N+VM Sbjct: 129 SLDCSFCATGKQGFNRDLTAAEIIGQVWIAAKSYGQLD----------PKADRTVTNVVM 178 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV S+++ D SKRR+TLSTSG VP + R+GE V LA+SLH Sbjct: 179 MGMGEPLLNFDNVVDSMNLMMDDNAYGLSKRRVTLSTSGVVPALDRLGEHCDVSLAVSLH 238 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHY-PGL-SNARRITFEYVMLKGINDSPRDALNL 302 A ++ LRN LVPIN+KYP+ +L+ + + Y GL N R++T EY ++ +ND P A L Sbjct: 239 APNDALRNELVPINKKYPIAVLLASAKRYIDGLPDNRRKMTIEYTLIDQVNDRPHHAYEL 298 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++L+ IP KINLIPFNP+ Y + F + G+++ +RT RG DI AAC Sbjct: 299 AELLREIPVKINLIPFNPFDLVNYKRVSNNALRNFQNILINEGFTTTVRTTRGDDIDAAC 358 Query: 363 GQL 365 GQL Sbjct: 359 GQL 361 >gi|298368581|ref|ZP_06979899.1| radical SAM enzyme, Cfr family [Neisseria sp. oral taxon 014 str. F0314] gi|298282584|gb|EFI24071.1| radical SAM enzyme, Cfr family [Neisseria sp. oral taxon 014 str. F0314] Length = 364 Score = 298 bits (764), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 152/350 (43%), Positives = 222/350 (63%), Gaps = 16/350 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +W++ G ++F M+D+++ +R L + +I P+++ + S DGTRKWLL Sbjct: 25 FRAKQVMRWMHQAGAQNFDEMTDLAKSLRQKLIEGATIEVPKLMAAQESSDGTRKWLLD- 83 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE RGTLC+SSQVGC+L C+FC TG Q RNLTA EI+ Q+ Sbjct: 84 ----VGTGNGVETVFIPETDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLW 139 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A +G V P R ISN+VMMGMGEP+ NFDNV +LSI D+ G Sbjct: 140 WANKAMG-----------VTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDNHGYGL 188 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+T+STSG VP + R+ + + V LA+SLHA ++++R+ +VP+N+KYPL+ L+ AC+ Sbjct: 189 SRRRVTVSTSGMVPQMDRLRDAMPVALAVSLHASNDEVRDKIVPLNKKYPLKELMAACQR 248 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + ITFEYVML G+ND+ + A LI +++ +P K NLIPFNP+P Y S + Sbjct: 249 YLVKAPRDFITFEYVMLDGVNDNAQHARELIDLVRDVPCKFNLIPFNPFPHSGYERSSAE 308 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQI 382 +I F + ++++G+ +R RG DI AACGQL K + ++ QI Sbjct: 309 NIRVFRDILQQAGFVVTVRKTRGDDIDAACGQLAGQVKDKTRRQQKWQQI 358 >gi|118594986|ref|ZP_01552333.1| hypothetical protein MB2181_04920 [Methylophilales bacterium HTCC2181] gi|118440764|gb|EAV47391.1| hypothetical protein MB2181_04920 [Methylophilales bacterium HTCC2181] Length = 363 Score = 298 bits (764), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 161/359 (44%), Positives = 217/359 (60%), Gaps = 14/359 (3%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++L+ EL E L K G H R Q+ KWIY G DF M+D+++ R L Sbjct: 2 DNLLDFNLRELTEYLEKFG----HKPYRAKQLLKWIYQSGEHDFSQMTDLAKSFRQSLQT 57 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I P I + +S DGTRKWLL +G IE V+IPE RGTLC+SSQVGC+L Sbjct: 58 TSEIATPSIQLDHLSTDGTRKWLLD-----VGAKNGIEAVFIPETDRGTLCISSQVGCAL 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC TG Q RNLT+ EI+ Q+ LA +L E ++ R I+N+VMMG Sbjct: 113 ECTFCSTGRQGFNRNLTSGEIVGQLWLANKMLR-----EQANYRLLAHEDRIITNVVMMG 167 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N+++V +L + D S+RR+TLSTSG +P I ++ ++ V LAISLHA Sbjct: 168 MGEPLTNYNHVVHALEMMLDDHVYGLSRRRVTLSTSGLIPAIDKLRDDCPVSLAISLHAP 227 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 + LR+ +VPIN+KYPL+ L+ AC Y + +TFEYVML+G+NDS A L+K++ Sbjct: 228 DDKLRDEIVPINKKYPLQDLMAACIRYIEKAPRDFVTFEYVMLEGVNDSVDQAKALVKLV 287 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 K +P K NLIPFNP+P YLCS + I F + + +G + +R RG DI AACGQL Sbjct: 288 KNVPCKFNLIPFNPFPNSGYLCSSRSVINAFKQVLMDAGLVATVRKTRGDDIDAACGQL 346 >gi|332141967|ref|YP_004427705.1| ribosomal RNA large subunit methyltransferase N [Alteromonas macleodii str. 'Deep ecotype'] gi|327551989|gb|AEA98707.1| ribosomal RNA large subunit methyltransferase N [Alteromonas macleodii str. 'Deep ecotype'] Length = 372 Score = 298 bits (764), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 161/364 (44%), Positives = 218/364 (59%), Gaps = 21/364 (5%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K +L+ + RE L ++G R Q+ KWIY G+ DF+ MS++++ +R + Sbjct: 1 MAKTNLLNLNREGLRNFFKEMG----EKPFRADQVMKWIYQHGVSDFEEMSNLNKNLRAM 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L ++ I PEI + + DGT K+ L + G E+E+V+IPE R TLCVSSQVG Sbjct: 57 LIENCEIKAPEIAYFQEASDGTIKFAL-----TLEGGQEVESVWIPETDRATLCVSSQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L C+FC T Q RNL+ EI+ QV + LG + S R I+N+V Sbjct: 112 CALECTFCSTAQQGFNRNLSVSEIIGQVWRVATFLG----------LSKDSSKRPITNVV 161 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + +G++I V LAISL Sbjct: 162 MMGMGEPLLNLKNVVPAMDIMLDDFGFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISL 221 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALN 301 HA +++LRN +VP+N+KY +E + R Y S A R+T EYVML INDS A Sbjct: 222 HAPTDELRNEIVPVNKKYNIEAFLAGVRRYLAKSKANQGRVTVEYVMLSNINDSTEQAHQ 281 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L K+LK P+KINLIPFNP+PG Y CS I FS+ + G+++ +R RG DI AA Sbjct: 282 LAKVLKDTPSKINLIPFNPYPGSPYTCSSNSRIDRFSKVLMEYGFTTVVRKTRGDDIDAA 341 Query: 362 CGQL 365 CGQL Sbjct: 342 CGQL 345 >gi|153208845|ref|ZP_01947069.1| radical SAM enzyme, Cfr family [Coxiella burnetii 'MSU Goat Q177'] gi|165921447|ref|ZP_02219635.1| radical SAM enzyme, Cfr family [Coxiella burnetii RSA 334] gi|212218666|ref|YP_002305453.1| radical SAM family enzyme [Coxiella burnetii CbuK_Q154] gi|254807166|sp|B6J7Q9|RLMN_COXB1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|120575696|gb|EAX32320.1| radical SAM enzyme, Cfr family [Coxiella burnetii 'MSU Goat Q177'] gi|165916762|gb|EDR35366.1| radical SAM enzyme, Cfr family [Coxiella burnetii RSA 334] gi|212012928|gb|ACJ20308.1| radical SAM family enzyme [Coxiella burnetii CbuK_Q154] Length = 370 Score = 298 bits (763), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 157/361 (43%), Positives = 221/361 (61%), Gaps = 24/361 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + EL+ + G P R +Q+ +WI+ RG+ DF M+D+S+ R L Sbjct: 3 EKINLLNLSETELQGFIASQGQPL----YRATQLLQWIHQRGVTDFSLMTDLSKPFRQQL 58 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 ++ + PE+ E++S DGT KWL R + +IETV+IP++ RGTLCVSSQVGC Sbjct: 59 SEASFVRVPELALERVSADGTHKWLFR-----LADNNKIETVFIPDRKRGTLCVSSQVGC 113 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L CSFC TG + RNLT EI+ QV LA LL KI+N+VM Sbjct: 114 ALNCSFCATGKEGFNRNLTLAEIIGQVWLAARLLKS---------------PYKITNVVM 158 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N++ V ++ + SK R+TLSTSG +P + R+ EE V LA+SLH Sbjct: 159 MGMGEPLLNYEAVVAAMHLMMHDHAYGLSKYRVTLSTSGVIPAMRRLREESPVSLAVSLH 218 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++ LRN+L+P+N+KY L+ LI CR Y + R +TFEYVM++G+ND DA LI+ Sbjct: 219 APNDALRNVLIPLNKKYSLDQLIPLCRDYYSRGSKRCVTFEYVMIEGMNDRLIDAKQLIR 278 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L +P KINLIPFN + G Y CS + I F +C+ +G+++ +R RG DI ACGQ Sbjct: 279 LLADVPCKINLIPFNSFQGTAYRCSTESAISVFQKCLMDAGFNTRVRRTRGDDIAGACGQ 338 Query: 365 L 365 L Sbjct: 339 L 339 >gi|239997032|ref|ZP_04717556.1| hypothetical protein AmacA2_21513 [Alteromonas macleodii ATCC 27126] Length = 372 Score = 298 bits (763), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 162/364 (44%), Positives = 218/364 (59%), Gaps = 21/364 (5%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K +L+ + RE L ++G R Q+ KWIY GI DF+ MS++++ +R + Sbjct: 1 MAKTNLLNLNREGLRNFFKEMG----EKPFRADQVMKWIYQHGISDFEEMSNLNKNLRAM 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L ++ I PEI + + DGT K+ L + G E+E+V+IPE R TLCVSSQVG Sbjct: 57 LIENCEIKAPEIAYFQEASDGTIKFAL-----TLEGGQEVESVWIPETDRATLCVSSQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L C+FC T Q RNL+ EI+ QV + LG + S R I+N+V Sbjct: 112 CALECTFCSTAQQGFNRNLSVSEIIGQVWRVATFLG----------LSKDSSKRPITNVV 161 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + +G++I V LAISL Sbjct: 162 MMGMGEPLLNLKNVVPAMDIMLDDFGFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISL 221 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALN 301 HA +++LRN +VPIN+KY +E + R Y S A R+T EYVML INDS A Sbjct: 222 HAPTDELRNEIVPINKKYNIEAFLAGVRRYLAKSKANQGRVTVEYVMLSNINDSTEQAHQ 281 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L K+LK P+KINLIPFNP+PG Y CS I F++ + G+++ +R RG DI AA Sbjct: 282 LAKVLKDTPSKINLIPFNPYPGSPYTCSSNSRIDRFAKVLMEYGFTTVVRKTRGDDIDAA 341 Query: 362 CGQL 365 CGQL Sbjct: 342 CGQL 345 >gi|167623296|ref|YP_001673590.1| ribosomal RNA large subunit methyltransferase N [Shewanella halifaxensis HAW-EB4] gi|205829881|sp|B0TLI1|RLMN_SHEHH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|167353318|gb|ABZ75931.1| radical SAM enzyme, Cfr family [Shewanella halifaxensis HAW-EB4] Length = 373 Score = 298 bits (762), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 168/385 (43%), Positives = 226/385 (58%), Gaps = 25/385 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+ L ++G R Q+ KWIY G+ DF+ M++I++ +R L Sbjct: 4 KKINLLDLDRKALRVLFTEMG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRAKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I+ PEI + S DGT K+ + +G E+ETVYIPE R TLCVSSQVGC Sbjct: 60 AAKCEIVAPEISSYQKSVDGTIKFAIN-----VGDGQEVETVYIPEDDRATLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ Q+ D G V + R I+N+VM Sbjct: 115 ALECTFCSTAQQGFNRNLTVAEIVGQIWR----------VADFIGFVKDTGERPITNVVM 164 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + ++G+ + V LA+S+H Sbjct: 165 MGMGEPLLNLKNVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIH 224 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR++LVP+N+KYPLE + R Y SNA R+T EYVML INDS A L Sbjct: 225 APNDELRDVLVPVNKKYPLEEFLGGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHEL 284 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K++K P K+NLIPFNP+PG Y S I FS+ + G + +R RG DI AAC Sbjct: 285 AKLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344 Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383 GQL + +KR+ K QE QI+ Sbjct: 345 GQLAGDIRDRTKRLAKKQMQESQIS 369 >gi|163749560|ref|ZP_02156807.1| hypothetical protein KT99_16109 [Shewanella benthica KT99] gi|161330670|gb|EDQ01607.1| hypothetical protein KT99_16109 [Shewanella benthica KT99] Length = 373 Score = 298 bits (762), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 169/385 (43%), Positives = 226/385 (58%), Gaps = 25/385 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+ L +G R Q+ KWIY G+ DF+ M++I++ +R L Sbjct: 4 KKINLLDLDRKGLRALFTDMG----EKPFRADQLMKWIYHFGVSDFEVMTNINKVLRAKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PEI + S DGT K+ + +G E+ETVYIPE R TLCVSSQVGC Sbjct: 60 AASCEIKAPEISSYQKSADGTIKFSIN-----VGDGQEVETVYIPEGDRATLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV D G + + R I+N+VM Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIIGQVWR----------VADFIGFIKKTGERPITNVVM 164 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + ++G+ I V LA+S+H Sbjct: 165 MGMGEPLLNLKNVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDAIDVALAVSIH 224 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR++LVP+N+KYPL+ + + R Y SNA R+T EYVML INDS A L Sbjct: 225 AANDELRDVLVPVNKKYPLQEFLASIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHEL 284 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K++K P KINLIPFNP+PG Y S I FS+ + G++ +R RG DI AAC Sbjct: 285 AKLMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGEDIDAAC 344 Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383 GQL + +KR+ K QE QI+ Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369 >gi|15837061|ref|NP_297749.1| hypothetical protein XF0459 [Xylella fastidiosa 9a5c] gi|81623829|sp|Q9PG43|RLMN_XYLFA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|9105305|gb|AAF83269.1|AE003896_6 conserved hypothetical protein [Xylella fastidiosa 9a5c] Length = 406 Score = 298 bits (762), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 160/371 (43%), Positives = 224/371 (60%), Gaps = 26/371 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K++L+ + RE LE + +R+ R Q+ KWI+ R + DF+ M+D+ + +R L Sbjct: 26 RKQNLLELNREGLERFFENVLGEKRY---RAHQVMKWIHHRYVSDFEQMTDVGKALRARL 82 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + P +V +K S DGT KWLL A IETVYIP+K RGTLCVSSQ+GC Sbjct: 83 QACAEVRVPCVVFDKHSADGTHKWLL---AMDTDSKNAIETVYIPDKGRGTLCVSSQIGC 139 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 L C+FC T TQ RNLT EI+ QV +A LG+ +P R+++N+VM Sbjct: 140 GLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVVM 188 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV +++S+ D +G S +R+TLSTSG VP I R+ E V LA+SLH Sbjct: 189 MGMGEPLMNFDNVVRAMSVMRDDLGYGLSNKRVTLSTSGLVPMIDRLSTESDVSLAVSLH 248 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNLI 303 A ++ LR LVP+N+KYP+ L+ +C Y ++ R +TFEY ++KG+ND A L+ Sbjct: 249 APNDKLREQLVPLNKKYPIAELMASCERYLSVNRKRDSVTFEYTLMKGVNDKQEHAHELV 308 Query: 304 KILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 K+++ AK+NLIPFNP+PG Y S + DI F + + + + +R RG Sbjct: 309 KLMRQFDCAMQVKGAAKVNLIPFNPFPGTYYERSTEVDIRAFQKILLDAQILAMVRRTRG 368 Query: 356 LDILAACGQLK 366 DI AACGQLK Sbjct: 369 DDIDAACGQLK 379 >gi|238020955|ref|ZP_04601381.1| hypothetical protein GCWU000324_00852 [Kingella oralis ATCC 51147] gi|237867935|gb|EEP68941.1| hypothetical protein GCWU000324_00852 [Kingella oralis ATCC 51147] Length = 366 Score = 298 bits (762), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 153/333 (45%), Positives = 207/333 (62%), Gaps = 16/333 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ G + F M+D+++ +R L + I P ++ + S DGTRKWLL Sbjct: 25 FRAKQVMRWIHQSGAQTFDEMTDLAKALRAKLEDNAVIGIPALMTSQESRDGTRKWLLD- 83 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE RGTLC+SSQVGC+L C+FC TG Q RNLTA EI+ Q+ Sbjct: 84 ----VGTGNGVETVFIPEAERGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLW 139 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A LG V P R ISN+VMMGMGEP+ N+DNV +LSI D G Sbjct: 140 WANKALG-----------VTPKNERVISNVVMMGMGEPMANYDNVITALSIMLDDHGYGL 188 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+T+STSG VP + R+ +++ V LA+SLHA ++ +R+ +VP+N+KYPL+ L+ AC Sbjct: 189 SRRRVTVSTSGMVPQMDRLKDDMPVALAVSLHASNDKVRDEIVPLNKKYPLKELMAACNR 248 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + ITFEYVML GIND P A L++++K P K NLIPFNP+P Y S K Sbjct: 249 YLAKAPRDFITFEYVMLDGINDKPEHARELVQLVKDTPCKFNLIPFNPFPNSGYERSSNK 308 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +I F E + + + +R RG DI AACGQL Sbjct: 309 NINIFKEILMEADLVTTVRKTRGDDIDAACGQL 341 >gi|29654554|ref|NP_820246.1| radical SAM protein [Coxiella burnetii RSA 493] gi|154706747|ref|YP_001424689.1| radical SAM family enzyme [Coxiella burnetii Dugway 5J108-111] gi|161830060|ref|YP_001597102.1| radical SAM protein [Coxiella burnetii RSA 331] gi|81628860|sp|Q83C77|RLMN_COXBU RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829741|sp|A9KFV0|RLMN_COXBN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829742|sp|A9NDW2|RLMN_COXBR RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|29541821|gb|AAO90760.1| radical SAM family enzyme [Coxiella burnetii RSA 493] gi|154356033|gb|ABS77495.1| radical SAM family enzyme [Coxiella burnetii Dugway 5J108-111] gi|161761927|gb|ABX77569.1| radical SAM enzyme, Cfr family [Coxiella burnetii RSA 331] Length = 370 Score = 297 bits (761), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 157/361 (43%), Positives = 221/361 (61%), Gaps = 24/361 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + EL+ + G P R +Q+ +WI+ RG+ DF M+D+S+ R L Sbjct: 3 EKINLLNLSEPELQGFIASQGQPL----YRATQLLQWIHQRGVTDFSLMTDLSKPFRQQL 58 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 ++ + PE+ E++S DGT KWL R + +IETV+IP++ RGTLCVSSQVGC Sbjct: 59 SEASFVRVPELALERVSADGTHKWLFR-----LADNNKIETVFIPDRKRGTLCVSSQVGC 113 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L CSFC TG + RNLT EI+ QV LA LL KI+N+VM Sbjct: 114 ALNCSFCATGKEGFNRNLTLAEIIGQVWLAARLLKS---------------PYKITNVVM 158 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N++ V ++ + SK R+TLSTSG +P + R+ EE V LA+SLH Sbjct: 159 MGMGEPLLNYEAVVAAMHLMMHDHAYGLSKYRVTLSTSGVIPAMRRLREESPVSLAVSLH 218 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++ LRN+L+P+N+KY L+ LI CR Y + R +TFEYVM++G+ND DA LI+ Sbjct: 219 APNDALRNVLIPLNKKYSLDQLIPLCRDYYSRGSKRCVTFEYVMIEGMNDRLIDAKQLIR 278 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L +P KINLIPFN + G Y CS + I F +C+ +G+++ +R RG DI ACGQ Sbjct: 279 LLADVPCKINLIPFNSFQGTAYRCSTESAISVFQKCLMDAGFNTRVRRTRGDDIAGACGQ 338 Query: 365 L 365 L Sbjct: 339 L 339 >gi|170725898|ref|YP_001759924.1| ribosomal RNA large subunit methyltransferase N [Shewanella woodyi ATCC 51908] gi|205829887|sp|B1KKI9|RLMN_SHEWM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|169811245|gb|ACA85829.1| radical SAM enzyme, Cfr family [Shewanella woodyi ATCC 51908] Length = 373 Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 169/385 (43%), Positives = 226/385 (58%), Gaps = 25/385 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+ L ++G R Q+ KWIY G+ DF M++I++ +R L Sbjct: 4 KKINLLDLDRKGLRALFTEMG----EKPFRADQLMKWIYHFGVSDFDEMNNINKALRAKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 N I+ PEI + S DGT K+ + +G E+ETVYIPE R TLCVSSQVGC Sbjct: 60 NARCEIVAPEISSFQKSEDGTIKFAIN-----VGQGQEVETVYIPEDDRATLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV D G V + R I+N+VM Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIIGQVWR----------VADFIGFVKETGERPITNVVM 164 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G S SKRR+T+STSG VP + ++G+ + V LA+S+H Sbjct: 165 MGMGEPLLNLKNVIPAMDIMLDDFGFSLSKRRVTVSTSGVVPALDKLGDALDVALAVSIH 224 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR++LVP+N+KYPLE + R Y SNA R+T EYVML INDS A L Sbjct: 225 APNDELRDVLVPVNKKYPLEEFLGGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHEL 284 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K++K P KINLIPFNP+PG Y S I FS+ + G + +R RG DI AAC Sbjct: 285 AKLMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344 Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383 GQL + +KR+ K Q+ QI+ Sbjct: 345 GQLAGDIRDRTKRLAKKRMQDSQIS 369 >gi|114320405|ref|YP_742088.1| radical SAM protein [Alkalilimnicola ehrlichii MLHE-1] gi|122941195|sp|Q0A989|RLMN_ALHEH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|114226799|gb|ABI56598.1| 23S rRNA m(2)A-2503 methyltransferase [Alkalilimnicola ehrlichii MLHE-1] Length = 360 Score = 297 bits (760), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 155/356 (43%), Positives = 218/356 (61%), Gaps = 23/356 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R +Q+ KW++ R + F+ M+DIS+ +R L + ++ PE++ E++S DGTRKWLLR Sbjct: 23 FRATQVLKWVHQRRVTGFEEMTDISKALRARLAERVALRLPEVLAEQVSEDGTRKWLLR- 81 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + G IETV+IP+ RGTLCVSSQVGC+L CSFC T Q RNL+ EI+ Q Sbjct: 82 ----VDGGQAIETVFIPDSGRGTLCVSSQVGCALDCSFCSTAQQGFNRNLSTAEIIGQYY 137 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 +A L G +I+N+V MGMGEPL N + V ++ + +D Sbjct: 138 VAYDQL--------------TGTGEQITNVVFMGMGEPLLNLEAVIPAVRLMTDDDAYGL 183 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 SKR++T+STSG V + R+ E+ V LA+SLHA +N LR+ LVPINRK+PLE LI AC Sbjct: 184 SKRKVTISTSGVVTMLERMREQTDVSLAVSLHAPNNALRDELVPINRKHPLERLIPACAA 243 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y RRIT+EYVML G+ND A L ++L IP+K+NLIPFNP+PG Y CS + Sbjct: 244 YIADKPHRRITWEYVMLDGVNDQDHHAHELARLLGDIPSKVNLIPFNPFPGARYRCSPRG 303 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL----KSLSKRIPKVPRQEMQITG 384 I+ F ++ G ++ R RG DI ACGQL + ++R ++ ++E++ G Sbjct: 304 RILRFVRILQSHGLTATTRVTRGQDIDGACGQLVGKVQDRTRRQQRLVQRELRREG 359 >gi|212212364|ref|YP_002303300.1| radical SAM family enzyme [Coxiella burnetii CbuG_Q212] gi|254807167|sp|B6IZM7|RLMN_COXB2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|212010774|gb|ACJ18155.1| radical SAM family enzyme [Coxiella burnetii CbuG_Q212] Length = 370 Score = 297 bits (760), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 157/361 (43%), Positives = 221/361 (61%), Gaps = 24/361 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + EL+ + G P R +Q+ +WI+ RG+ DF M+D+S+ R L Sbjct: 3 EKINLLNLSEPELQGFIASQGQPL----YRATQLLQWIHQRGVTDFSLMTDLSKPFRQQL 58 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 ++ + PE+ E++S DGT KWL R + +IETV+IP++ RGTLCVSSQVGC Sbjct: 59 SEASFVRVPELALERVSADGTHKWLFR-----LADNNKIETVFIPDRKRGTLCVSSQVGC 113 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L CSFC TG + RNLT EI+ QV LA LL KI+N+VM Sbjct: 114 ALNCSFCATGKEGFNRNLTLAEIIGQVWLAARLLKS---------------PYKITNVVM 158 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N++ V ++ + SK R+TLSTSG +P + R+ EE V LA+SLH Sbjct: 159 MGMGEPLLNYEAVVAAMHLMMHDHAYGLSKYRVTLSTSGVIPAMRRLREESPVSLAVSLH 218 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++ LRN+L+P+N+KY L+ LI CR Y + R +TFEYVM++G+ND DA LI+ Sbjct: 219 APNDALRNVLIPLNKKYSLDQLIPLCRDYYSRGSKRCVTFEYVMIEGMNDRLIDAKRLIR 278 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L +P KINLIPFN + G Y CS + I F +C+ +G+++ +R RG DI ACGQ Sbjct: 279 LLADVPCKINLIPFNSFQGTAYRCSTESAISVFQKCLMDAGFNTRVRRTRGDDIAGACGQ 338 Query: 365 L 365 L Sbjct: 339 L 339 >gi|126175195|ref|YP_001051344.1| ribosomal RNA large subunit methyltransferase N [Shewanella baltica OS155] gi|205829878|sp|A3D6W2|RLMN_SHEB5 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|125998400|gb|ABN62475.1| radical SAM enzyme, Cfr family [Shewanella baltica OS155] Length = 373 Score = 297 bits (760), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 168/385 (43%), Positives = 225/385 (58%), Gaps = 25/385 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+ + +G R Q+ KW+Y G+ DF+ M++I++ +R L Sbjct: 4 KKINLLDLDRKAMRALFADMG----EKPFRADQLMKWLYHFGVSDFEEMTNINKVLRQKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I+ PEI + S DGT K+ + +G E+ETVYIPE R TLCVSSQVGC Sbjct: 60 AARCEIVAPEISSFQKSTDGTIKFAIN-----VGQGQEVETVYIPEDDRATLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC TG Q RNLT EI+ Q+ LG + R I+N+VM Sbjct: 115 ALECTFCSTGQQGFNRNLTVSEIVGQIWRVSHFLG----------FAKDTGERPITNVVM 164 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + ++G+ I V LA+S+H Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDAIDVALAVSIH 224 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ILVPIN+KY L+ + R Y SNA R+T EYVML INDS A L Sbjct: 225 APNDELRDILVPINKKYQLDEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHEL 284 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K++K P KINLIPFNP+PG Y S I FS+ + G++ +R RG DI AAC Sbjct: 285 AKLMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAAC 344 Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383 GQL + +KR+ K QE QI+ Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369 >gi|119505391|ref|ZP_01627465.1| hypothetical protein MGP2080_14284 [marine gamma proteobacterium HTCC2080] gi|119458846|gb|EAW39947.1| hypothetical protein MGP2080_14284 [marine gamma proteobacterium HTCC2080] Length = 388 Score = 297 bits (760), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 154/362 (42%), Positives = 220/362 (60%), Gaps = 21/362 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ R++LE+ +G R R Q+ KW++ +G+ DF MS++ + +R L Sbjct: 16 KVNLLGLSRQQLEDFFTDLG----EKRFRAQQVMKWMHHQGVIDFAAMSNLGKGLREKLE 71 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +I PEI D++ S DGTRKW +R + G +E V IPE R TLCVSSQVGCS Sbjct: 72 TLATITPPEIADQQDSADGTRKWAVR-----VAGGALVEAVLIPEAGRATLCVSSQVGCS 126 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC TG Q R+LTA EI+ QV LA + + G + GR ++N+VMM Sbjct: 127 LDCKFCSTGKQGFQRDLTAAEIIGQVWLA---INSYSGWQ-------SGKGRIVTNVVMM 176 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++S+ +D + SKR++TLSTSG VP + R+ E V LA+SLHA Sbjct: 177 GMGEPLLNFDNVVSAMSLMTDDLAYGLSKRKVTLSTSGVVPALDRLAEFSDVSLAVSLHA 236 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNLI 303 ++++RN +VPINR+YP++ L+ + + Y + R+ +T EY +L G+ND P A L Sbjct: 237 PNDEIRNKIVPINRRYPIQQLLQSAKSYIDAQSDRKRVVTIEYTLLAGVNDQPEHARELS 296 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LK P KINLIPFN +P + + F + + +G+ +R+ RG DI AACG Sbjct: 297 TLLKDFPCKINLIPFNHFPNSGFDRPSGNAVSRFWQVLVDAGFIVTVRSTRGDDIDAACG 356 Query: 364 QL 365 QL Sbjct: 357 QL 358 >gi|205829898|sp|A1RHQ0|RLMN_SHESW RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|319427125|gb|ADV55199.1| radical SAM enzyme, Cfr family [Shewanella putrefaciens 200] Length = 373 Score = 297 bits (760), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 167/385 (43%), Positives = 224/385 (58%), Gaps = 25/385 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+ + +G R Q+ KWIY G+ DF+ M++I++ +R L Sbjct: 4 KKINLLDLDRKAMRALFADLG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I+ PEI + S DGT K+ + +G E+ETVYIPE R TLCVSSQVGC Sbjct: 60 AARCEIVAPEISSFQKSTDGTIKFAIH-----VGEGQEVETVYIPEDDRATLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ Q+ LG D R I+N+VM Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLGFAKDTGD----------RPITNVVM 164 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + ++G+ + V LA+S+H Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIH 224 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ILVP+N+KYPL+ + R Y SNA R+T EYVML INDS A L Sbjct: 225 APNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHEL 284 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K++K P K+NLIPFNP+PG Y S I FS+ + G + +R RG DI AAC Sbjct: 285 AKLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344 Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383 GQL + +KR+ K QE QI+ Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369 >gi|294140143|ref|YP_003556121.1| hypothetical protein SVI_1372 [Shewanella violacea DSS12] gi|293326612|dbj|BAJ01343.1| conserved hypothetical protein [Shewanella violacea DSS12] Length = 379 Score = 296 bits (759), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 171/386 (44%), Positives = 225/386 (58%), Gaps = 27/386 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+ L +G R Q+ KWIY G+ DF+ M++I++ +R L Sbjct: 10 KKINLLDLDRKGLRALFTDMG----EKPFRADQLMKWIYHFGVSDFELMTNINKGLRAKL 65 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I P+I + S DGT K+ + +G E+ETVYIPE R TLCVSSQVGC Sbjct: 66 AARCEITAPQISSYQKSEDGTIKFAIN-----VGDGQEVETVYIPEGDRATLCVSSQVGC 120 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIV 183 +L C+FC T Q RNLT EI+ QV +G I G R I+N+V Sbjct: 121 ALECTFCSTAQQGFNRNLTVSEIIGQVWRVADFIG-----------FIKDTGERPITNVV 169 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + +G+ I V LA+S+ Sbjct: 170 MMGMGEPLLNLKNVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDILGDAIDVALAVSI 229 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALN 301 HA +++LR++LVP+N+KYPLE + A R Y SNA R+T EYVML INDS A Sbjct: 230 HAANDELRDVLVPVNKKYPLEEFLAAIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHE 289 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L K++K P KINLIPFNP+PG Y S I FS+ + G++ +R RG DI AA Sbjct: 290 LAKLMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAA 349 Query: 362 CGQL----KSLSKRIPKVPRQEMQIT 383 CGQL + +KR+ K QE QI+ Sbjct: 350 CGQLAGDIRDRTKRLAKKRMQENQIS 375 >gi|157961130|ref|YP_001501164.1| ribosomal RNA large subunit methyltransferase N [Shewanella pealeana ATCC 700345] gi|205829883|sp|A8H242|RLMN_SHEPA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|157846130|gb|ABV86629.1| radical SAM enzyme, Cfr family [Shewanella pealeana ATCC 700345] Length = 373 Score = 296 bits (759), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 167/385 (43%), Positives = 226/385 (58%), Gaps = 25/385 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+ L ++G R Q+ KWIY G+ DF+ M++I++ +R L Sbjct: 4 KKINLLDLDRKALRALFTEMG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRAKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I+ PEI + S DGT K+ + +G E+ETVYIPE R TLCVSSQVGC Sbjct: 60 AAKCEIVAPEISSYQKSVDGTIKFAIN-----VGDGQEVETVYIPEDDRATLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ Q+ D G V + R I+N+VM Sbjct: 115 ALECTFCSTAQQGFNRNLTVAEIVGQIWR----------VADFIGFVKDTGERPITNVVM 164 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + ++G+ + V LA+S+H Sbjct: 165 MGMGEPLLNLKNVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDVLDVALAVSIH 224 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR++LVP+N+KYPLE + R Y SNA R+T EYVML INDS A L Sbjct: 225 APNDELRDVLVPVNKKYPLEEFLGGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHEL 284 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K++K P K+NLIPFNP+PG Y S I FS+ + G + +R RG DI AAC Sbjct: 285 AKLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344 Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383 GQL + +KR+ K Q+ QI+ Sbjct: 345 GQLAGDIRDRTKRLAKKQMQQNQIS 369 >gi|198283710|ref|YP_002220031.1| radical SAM enzyme, Cfr family [Acidithiobacillus ferrooxidans ATCC 53993] gi|198248231|gb|ACH83824.1| radical SAM enzyme, Cfr family [Acidithiobacillus ferrooxidans ATCC 53993] Length = 363 Score = 296 bits (759), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 169/361 (46%), Positives = 219/361 (60%), Gaps = 26/361 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 ++ L+G+ R+ L + L G R +QI +W++ R + DF M+DIS+ +R L Sbjct: 12 ERPHLLGLGRQSLAKLLRTWG----ESPFRANQILQWLHTRQVTDFAAMTDISKTLRARL 67 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PEI+ ++ + D TRKWLLR P IETV+IP + RGTLC+SSQVGC Sbjct: 68 AAETRIDMPEIIADQTAADCTRKWLLRLP-----DGNAIETVFIPGEDRGTLCISSQVGC 122 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 SL CSFC TG Q L RNL EI+ QV +AR DF G + I+NIV Sbjct: 123 SLACSFCATGAQGLSRNLETHEIIAQVRVAR----DFLGLD------------AITNIVF 166 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEP+ N V +L + D F RRIT+ST+G VP + R+G E V LAISLH Sbjct: 167 MGMGEPMLNLREVLPALDLLRDDYAYGFGARRITVSTAGVVPGMDRLGAESPVNLAISLH 226 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +++R+ILVP+NR YPL L+ ACR Y L RRITFEYVML+G+ND+ A L++ Sbjct: 227 ASRDEIRDILVPVNRHYPLAELLAACRRY-PLPPRRRITFEYVMLEGVNDADSHARELLR 285 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L+ IPA +NLIPFNP+PG +Y S Q I F + I R + R PRG DI AACGQ Sbjct: 286 LLRDIPAMVNLIPFNPFPGSDYKRSPQVRIDAFRDIILRGNVMTVTRRPRGDDIAAACGQ 345 Query: 365 L 365 L Sbjct: 346 L 346 >gi|332992286|gb|AEF02341.1| ribosomal RNA large subunit methyltransferase N [Alteromonas sp. SN2] Length = 372 Score = 296 bits (759), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 161/364 (44%), Positives = 218/364 (59%), Gaps = 21/364 (5%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K +L+ + RE L + G R Q+ KWIY +G DF+ MS++++ +R + Sbjct: 1 MAKTNLLNLNREGLRNFFKEKG----EKPFRADQVMKWIYQQGESDFEKMSNLNKNLRAM 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +H + PEI + + DGT K+ L + G E+ETV+IPE R TLCVSSQVG Sbjct: 57 LIEHCEVKAPEIAYFQEASDGTIKFAL-----ALEGGQEVETVWIPEADRATLCVSSQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L C+FC T Q RNL+ EI+ QV + LG + + R I+N+V Sbjct: 112 CALECTFCSTAQQGFNRNLSVSEIIGQVWRVATFLG----------LSKDTSKRPITNVV 161 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N NV +++I D G SKRR+TLSTSG VP + +G++I V LAISL Sbjct: 162 MMGMGEPLLNLKNVVPAMNIMLDDFGFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISL 221 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHY--PGLSNARRITFEYVMLKGINDSPRDALN 301 HA +++LRN +VP+N+KY +E + R Y +N R+T EYVML INDS A Sbjct: 222 HAPNDELRNEIVPVNKKYNIEAFLAGVRRYLEKSKANQGRVTVEYVMLSHINDSTDQAHE 281 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L K+LK P KINLIPFNP+PG YLCS I FS+ + G+++ +R RG DI AA Sbjct: 282 LAKVLKDTPCKINLIPFNPYPGSPYLCSSNSRIDRFSKVLMDYGFTTVVRKTRGDDIDAA 341 Query: 362 CGQL 365 CGQL Sbjct: 342 CGQL 345 >gi|253996236|ref|YP_003048300.1| radical SAM enzyme, Cfr family [Methylotenera mobilis JLW8] gi|253982915|gb|ACT47773.1| radical SAM enzyme, Cfr family [Methylotenera mobilis JLW8] Length = 367 Score = 296 bits (758), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 150/333 (45%), Positives = 208/333 (62%), Gaps = 10/333 (3%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +W++ G+ DF+ M+DI++ +R L I P + ++S DGTRKWL+ Sbjct: 24 FRAKQLMRWMHHFGVHDFEQMTDIAKNLREKLAVDAEITLPTVQLAQVSNDGTRKWLI-- 81 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 IETV+IPE RGTLCVSSQVGC+L C+FC TG Q RNL+ EI+ QV Sbjct: 82 ---GTDTANSIETVFIPEDDRGTLCVSSQVGCALECTFCSTGRQGFNRNLSVAEIIGQVA 138 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 +A L PG + ++P+ R ISN+VMMGMGEPL N+DNV ++ I D Sbjct: 139 IANQTLRQEPGYD-----MLPANDRIISNVVMMGMGEPLANYDNVVTAMQIMLDDSAYGL 193 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+TLSTSG VP + R+ E+ V LA+SLHA ++ LR+++VPIN+KYPL+ L+ AC Sbjct: 194 SRRRVTLSTSGMVPAMDRLKEDCPVALAVSLHAPNDALRDVIVPINKKYPLKELMAACNR 253 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + +TFEYVML G+ND+ A L++++K + K NLIPFNP+P Y S Sbjct: 254 YLEKAPRDFVTFEYVMLDGVNDTVEHAHQLLELVKNVSCKFNLIPFNPFPNSGYDTSKPN 313 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + F + + ++GY +R RG DI AACGQL Sbjct: 314 HVRVFRDILMQAGYVVTVRKTRGDDIDAACGQL 346 >gi|218666070|ref|YP_002426339.1| radical SAM enzyme, Cfr family [Acidithiobacillus ferrooxidans ATCC 23270] gi|218518283|gb|ACK78869.1| radical SAM enzyme, Cfr family [Acidithiobacillus ferrooxidans ATCC 23270] Length = 362 Score = 296 bits (758), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 169/361 (46%), Positives = 219/361 (60%), Gaps = 26/361 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 ++ L+G+ R+ L + L G R +QI +W++ R + DF M+DIS+ +R L Sbjct: 11 ERPHLLGLGRQSLAKLLRTWG----ESPFRANQILQWLHTRQVTDFAAMTDISKTLRARL 66 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PEI+ ++ + D TRKWLLR P IETV+IP + RGTLC+SSQVGC Sbjct: 67 AAETRIDMPEIIADQTAADCTRKWLLRLP-----DGNAIETVFIPGEDRGTLCISSQVGC 121 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 SL CSFC TG Q L RNL EI+ QV +AR DF G + I+NIV Sbjct: 122 SLACSFCATGAQGLSRNLETHEIIAQVRVAR----DFLGLD------------AITNIVF 165 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEP+ N V +L + D F RRIT+ST+G VP + R+G E V LAISLH Sbjct: 166 MGMGEPMLNLREVLPALDLLRDDYAYGFGARRITVSTAGVVPGMDRLGAESPVNLAISLH 225 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +++R+ILVP+NR YPL L+ ACR Y L RRITFEYVML+G+ND+ A L++ Sbjct: 226 ASRDEIRDILVPVNRHYPLAELLAACRRY-PLPPRRRITFEYVMLEGVNDADSHARELLR 284 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L+ IPA +NLIPFNP+PG +Y S Q I F + I R + R PRG DI AACGQ Sbjct: 285 LLRDIPAMVNLIPFNPFPGSDYKRSPQVRIDAFRDIILRGNVMTVTRRPRGDDIAAACGQ 344 Query: 365 L 365 L Sbjct: 345 L 345 >gi|326794512|ref|YP_004312332.1| ribosomal RNA large subunit methyltransferase N [Marinomonas mediterranea MMB-1] gi|326545276|gb|ADZ90496.1| Ribosomal RNA large subunit methyltransferase N [Marinomonas mediterranea MMB-1] Length = 373 Score = 296 bits (758), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 164/367 (44%), Positives = 221/367 (60%), Gaps = 20/367 (5%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M+ +K +L+G+ E+L E IG + R +Q+ KWI+ +G F+ M+D+S+++ Sbjct: 1 MSATQKVNLLGLSPEKLVEFFESIG----EKKFRATQVMKWIHQKGAESFEEMTDVSKKL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVE-IETVYIPEKSRGTLCVS 119 R L I PEIV++ IS DGTRKW++R GG + +ETV IP+ R TLCVS Sbjct: 57 RAKLEGICEIRAPEIVEQNISTDGTRKWIIRTE----GGMNDCVETVLIPDGDRATLCVS 112 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 SQVGCSL CSFC TG Q RNLT EI+ Q+ +A G P+ R++ Sbjct: 113 SQVGCSLDCSFCSTGKQGFNRNLTPAEIIGQLWIAIKSFGPMD----------PNGPRRV 162 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 +N+VMMGMGEPL NF+ V ++ + SKRR+TLSTSG VP I + + V L Sbjct: 163 TNVVMMGMGEPLMNFEPVVDAMILMMHDNAYGLSKRRVTLSTSGVVPKIYELVKRTDVSL 222 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRD 298 AISLHA +N LR+ LVPINRKYP+E L++AC+HY L + R IT EY M+ G+ND + Sbjct: 223 AISLHAPNNPLRDELVPINRKYPIEELLEACQHYLDNLPDKRHITIEYTMMAGVNDQEQH 282 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L +LK + K+NLIPFNP+P Y F + + GY+ +RT RG DI Sbjct: 283 ARELAHLLKDLECKVNLIPFNPFPHSGYEKPSNNQTRRFQKILADDGYTVTVRTTRGDDI 342 Query: 359 LAACGQL 365 AACGQL Sbjct: 343 DAACGQL 349 >gi|114562291|ref|YP_749804.1| hypothetical protein Sfri_1113 [Shewanella frigidimarina NCIMB 400] gi|122300423|sp|Q085U9|RLMN_SHEFN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|114333584|gb|ABI70966.1| radical SAM enzyme, Cfr family protein [Shewanella frigidimarina NCIMB 400] Length = 373 Score = 296 bits (758), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 169/386 (43%), Positives = 227/386 (58%), Gaps = 25/386 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +KK +L+ + R+ L ++G R Q+ KW+Y G+ DF+ M++I++ +R Sbjct: 3 VKKINLLDLDRKGLRALFSEMG----EKPFRADQLMKWVYHFGVTDFEEMNNINKVLRTK 58 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L I+ PEI + S DGT K+ + +G E+ETVYIPE+ R TLCVSSQVG Sbjct: 59 LAAKCEIVAPEIASFQKSNDGTIKFAIN-----VGQGQEVETVYIPEEDRATLCVSSQVG 113 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L C+FC TG Q RNLT EI+ QV LG D R ISN+V Sbjct: 114 CALECTFCSTGQQGFNRNLTVSEIIGQVWRVSQFLGFHKDTGD----------RPISNVV 163 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + ++G+ I V LA+S+ Sbjct: 164 MMGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDAIDVALAVSI 223 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALN 301 HA +++LR++LVP+N+KYPL+ + R Y SNA R+T EYVML INDS A Sbjct: 224 HAPNDELRDVLVPVNKKYPLQEFLAGIRRYLEKSNANRGRVTVEYVMLDHINDSTDQAHE 283 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++K P KINLIPFNP+PG Y S I FS+ + G + +R RG DI AA Sbjct: 284 LAILMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEHGLTVIVRKTRGDDIDAA 343 Query: 362 CGQL----KSLSKRIPKVPRQEMQIT 383 CGQL + +KR+ K Q+ QI+ Sbjct: 344 CGQLAGDIRDRTKRLAKKQMQQNQIS 369 >gi|221133865|ref|ZP_03560170.1| hypothetical protein GHTCC_02964 [Glaciecola sp. HTCC2999] Length = 389 Score = 295 bits (756), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 159/363 (43%), Positives = 214/363 (58%), Gaps = 21/363 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R + E L IG R QI +WIY G+ MS+I+++++ L Sbjct: 18 KKTNLLDLTRSGMREFLSSIG----EKPFRADQIMQWIYHHGVSSVDEMSNINKQLKAKL 73 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 N H I+ PEI ++ + DGT K+ L + G E+E V+IPE R TLCVSSQVGC Sbjct: 74 NTHAEIVAPEIAYQQNATDGTIKFAL-----TLNGGQEVEAVWIPETDRATLCVSSQVGC 128 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNL+ EI+ QV + +G + + R I+N+VM Sbjct: 129 ALECTFCSTAQQGFNRNLSVSEIIGQVWRVATTIG----------LSKDTAKRPITNVVM 178 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ + D G SKRR+TLSTSG VP + +G++I V LAISLH Sbjct: 179 MGMGEPLLNLKNVVPAMELMMDDYGFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISLH 238 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++ LR+ +VP+N+KY +E + R Y S A ++T EYVML INDS A L Sbjct: 239 APNDTLRDEIVPVNKKYNIETFLAGVRRYLDKSKANQGKVTVEYVMLSHINDSTDQAHEL 298 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K+L G P KINLIPFNP+PG Y CS I FS+ + +GY+ +R RG DI AAC Sbjct: 299 AKVLSGTPCKINLIPFNPYPGSPYTCSSNSRIDRFSKVLMAAGYTVMVRKTRGDDIDAAC 358 Query: 363 GQL 365 GQL Sbjct: 359 GQL 361 >gi|332288518|ref|YP_004419370.1| ribosomal RNA large subunit methyltransferase N [Gallibacterium anatis UMN179] gi|330431414|gb|AEC16473.1| ribosomal RNA large subunit methyltransferase N [Gallibacterium anatis UMN179] Length = 372 Score = 295 bits (756), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 165/363 (45%), Positives = 217/363 (59%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+E+ L +G R QI KWIY G +F M++I++ +R L Sbjct: 4 EKTNLLNLTRQEMRHFLADLG----EKPFRADQIMKWIYHYGEDNFDNMTNINKVLREKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q I PEI E+ S DGT KW ++ G +IE+VYIPE R TLCVSSQVGC Sbjct: 60 KQVAEIKAPEIAVEQRSFDGTIKWAMQV------GDQQIESVYIPEADRATLCVSSQVGC 113 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G F E V P I+N+VM Sbjct: 114 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKVIGAFG-----ETKVRP-----ITNVVM 163 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++GE I V LAISLH Sbjct: 164 MGMGEPLLNVSNVVPAMEIMLDDFGYGLSKRRVTLSTSGVVPALDKLGEMIDVALAISLH 223 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LRN +VP+N+KY +EML+D+ Y +SNA ++T EYVML +ND A L Sbjct: 224 APNDELRNEIVPLNKKYNIEMLMDSVNRYLKISNANHGKVTIEYVMLDHVNDEVEHAHQL 283 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K+LK P KINLIP+NP+P Y S I F + + G++ +R RG DI AAC Sbjct: 284 AKVLKNTPCKINLIPWNPFPEAPYNKSSNTRIDRFQKTLMEYGFTVIVRKTRGDDIDAAC 343 Query: 363 GQL 365 GQL Sbjct: 344 GQL 346 >gi|92114968|ref|YP_574896.1| hypothetical protein Csal_2851 [Chromohalobacter salexigens DSM 3043] gi|123387343|sp|Q1QTL1|RLMN_CHRSD RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|91798058|gb|ABE60197.1| 23S rRNA m(2)A-2503 methyltransferase [Chromohalobacter salexigens DSM 3043] Length = 375 Score = 295 bits (756), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 157/363 (43%), Positives = 221/363 (60%), Gaps = 22/363 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + +L+G+ REE+E + +G + R +Q+ KWI+ G DF M+++S+ +R L Sbjct: 9 RTNLLGLTREEMESFFVSLG----EKKFRAAQVMKWIHHEGCADFASMTNLSKALRTRLE 64 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK--SRGTLCVSSQVG 123 + I P +V E S DGTRKW+L + +ETV IP + R TLCVSSQVG Sbjct: 65 ELAEIRGPRVVYEGTSQDGTRKWVLE-----VEDGSYVETVLIPAEGGKRRTLCVSSQVG 119 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 CSL CSFC TG Q RNLT+ EI+ QV +A + G + R ++N+V Sbjct: 120 CSLDCSFCSTGKQGFQRNLTSAEIIGQVWVASNSFG----------ARRDTTNRPVTNVV 169 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N+DNV ++ + D G SKRR+TLSTSG VP + ++G+E+ V LA+SL Sbjct: 170 MMGMGEPLLNYDNVVPAMKLMLDDNGYGLSKRRVTLSTSGVVPKLDQLGDELDVSLAVSL 229 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNL 302 HA +++LRN LVP+NRKY + L+DACR Y + R +T EY ++K +ND A L Sbjct: 230 HAANDELRNELVPLNRKYNIATLLDACRRYLAKCDDTRMLTIEYTLIKDVNDQQHHAEEL 289 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +L +P+KINLIPFNP+P Y + ++ F + + GY++ +RT RG DI AAC Sbjct: 290 AALLADLPSKINLIPFNPFPHSGYEKPSRNQVMRFQQWLYDLGYTALVRTTRGDDIDAAC 349 Query: 363 GQL 365 GQL Sbjct: 350 GQL 352 >gi|197285703|ref|YP_002151575.1| ribosomal RNA large subunit methyltransferase N [Proteus mirabilis HI4320] gi|227356214|ref|ZP_03840603.1| Fe-S-cluster oxidoreductase [Proteus mirabilis ATCC 29906] gi|254807194|sp|B4EZT6|RLMN_PROMH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|194683190|emb|CAR43831.1| radical SAM superfamily protein [Proteus mirabilis HI4320] gi|227163678|gb|EEI48594.1| Fe-S-cluster oxidoreductase [Proteus mirabilis ATCC 29906] Length = 393 Score = 295 bits (756), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 166/388 (42%), Positives = 225/388 (57%), Gaps = 33/388 (8%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 +N K +L+ + R+++ E + +G R QI KWIY DF M+DI++ + Sbjct: 21 VNQKTKINLLDLNRKQMRELFVSMG----EKPFRADQIMKWIYHYCYDDFDQMTDINKVL 76 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L + I PE+ +E+ S DGT KW ++ G ++ETVYIPE R TLCVSS Sbjct: 77 RAKLKEIAEIKAPEVSEEQRSADGTIKWAIKV------GSQQVETVYIPEDDRATLCVSS 130 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK-I 179 QVGC+L C FC T Q RNL EI+ QV A ++G + GR+ I Sbjct: 131 QVGCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAKIIG-----------ALKETGRRPI 179 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 +N+VMMGMGEPL N +NV +L I D G SKRR+T+STSG VP + ++ + + V L Sbjct: 180 TNVVMMGMGEPLLNLNNVIPALEIMMDDFGFGLSKRRVTVSTSGVVPALDKLADAVDVAL 239 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPR 297 AISLHA ++D+R+ +VPIN+KY +EM +D R Y SNA R+T EYVML INDS Sbjct: 240 AISLHAPTDDIRDEIVPINKKYNIEMFLDGVRRYIAKSNANQGRVTVEYVMLDHINDSTE 299 Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 A L + LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG D Sbjct: 300 QAHQLAECLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDD 359 Query: 358 ILAACGQL---------KSLSKRIPKVP 376 I AACGQL ++L KR+ P Sbjct: 360 IDAACGQLAGDVIDRTKRTLKKRLQGEP 387 >gi|120598175|ref|YP_962749.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp. W3-18-1] gi|120558268|gb|ABM24195.1| radical SAM enzyme, Cfr family [Shewanella sp. W3-18-1] Length = 399 Score = 295 bits (756), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 167/385 (43%), Positives = 224/385 (58%), Gaps = 25/385 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+ + +G R Q+ KWIY G+ DF+ M++I++ +R L Sbjct: 30 KKINLLDLDRKAMRALFADLG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKL 85 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I+ PEI + S DGT K+ + +G E+ETVYIPE R TLCVSSQVGC Sbjct: 86 AARCEIVAPEISSFQKSTDGTIKFAIH-----VGEGQEVETVYIPEDDRATLCVSSQVGC 140 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ Q+ LG D R I+N+VM Sbjct: 141 ALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLGFAKDTGD----------RPITNVVM 190 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + ++G+ + V LA+S+H Sbjct: 191 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIH 250 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ILVP+N+KYPL+ + R Y SNA R+T EYVML INDS A L Sbjct: 251 APNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHEL 310 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K++K P K+NLIPFNP+PG Y S I FS+ + G + +R RG DI AAC Sbjct: 311 AKLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 370 Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383 GQL + +KR+ K QE QI+ Sbjct: 371 GQLAGDIRDRTKRLAKKRMQENQIS 395 >gi|91775976|ref|YP_545732.1| hypothetical protein Mfla_1623 [Methylobacillus flagellatus KT] gi|123078840|sp|Q1H0U6|RLMN_METFK RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|91709963|gb|ABE49891.1| 23S rRNA m(2)A-2503 methyltransferase [Methylobacillus flagellatus KT] Length = 362 Score = 295 bits (756), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 153/333 (45%), Positives = 207/333 (62%), Gaps = 16/333 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +W++ G+ DF M+DI++ +R L + + P + E+IS DGTRKWL+ Sbjct: 25 FRAKQMMRWMHHFGVSDFGEMTDIAKALREKLAKEAVVAPPSVHLEQISEDGTRKWLID- 83 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE RGTLCVSSQVGC+L C+FC TG Q RNL+ EI+ Q+ Sbjct: 84 ----VGAGNGVETVFIPEDDRGTLCVSSQVGCALDCTFCSTGRQGFNRNLSVSEIIGQLW 139 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 +A LG P + R ISN+VMMGMGEPL NFDNV +++I D Sbjct: 140 VANKALGRDPKGD-----------RIISNVVMMGMGEPLANFDNVVAAMNIMLDDSAYGL 188 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+TLSTSG VP + R+ EE V LA+SLHA ++ LR+ +VPINRKYP+ L+ AC+ Sbjct: 189 SRRRVTLSTSGMVPAMDRLREECPVALAVSLHAPNDALRDEIVPINRKYPIAQLMAACQR 248 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + +TFEYVML G+ND+ A L+ I++ +P K NLIPFNP+P Y S Sbjct: 249 YLEKAPRDFVTFEYVMLDGVNDTAEHARQLLNIVQDVPCKFNLIPFNPFPNSGYDTSKPD 308 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +I F + + ++GY R RG DI AACGQL Sbjct: 309 NIRRFRDILMQAGYVVTTRKTRGEDIDAACGQL 341 >gi|146293751|ref|YP_001184175.1| ribosomal RNA large subunit methyltransferase N [Shewanella putrefaciens CN-32] gi|205829884|sp|A4Y8U3|RLMN_SHEPC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|145565441|gb|ABP76376.1| radical SAM enzyme, Cfr family [Shewanella putrefaciens CN-32] Length = 373 Score = 295 bits (756), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 166/385 (43%), Positives = 224/385 (58%), Gaps = 25/385 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+ + +G R Q+ KWIY G+ DF+ M++I++ +R L Sbjct: 4 KKINLLDLDRKAMRALFADLG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I+ PEI + S DGT K+ + +G E+ETVYIPE R TLCVSSQVGC Sbjct: 60 AARCEIVAPEISSFQKSTDGTIKFAIH-----VGEGQEVETVYIPEDDRATLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ Q+ LG D R I+N+VM Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLGFAKDTGD----------RPITNVVM 164 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + ++G+ + V LA+S+H Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIH 224 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ILVP+N+KYPL+ + R Y SNA R+T EYVML INDS A L Sbjct: 225 APNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHEL 284 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K+++ P K+NLIPFNP+PG Y S I FS+ + G + +R RG DI AAC Sbjct: 285 AKLMEDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344 Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383 GQL + +KR+ K QE QI+ Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369 >gi|182682234|ref|YP_001830394.1| radical SAM protein [Xylella fastidiosa M23] gi|182632344|gb|ACB93120.1| radical SAM enzyme, Cfr family [Xylella fastidiosa M23] Length = 401 Score = 295 bits (756), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 160/374 (42%), Positives = 224/374 (59%), Gaps = 26/374 (6%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 + +K++L+ + RE LE + +R+ R Q+ KWI+ R + DF+ M+D+ + +R Sbjct: 18 DVARKQNLLELDREGLERFFEDVLGEKRY---RAHQVMKWIHHRYVADFEQMTDVGKALR 74 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L + P +V +K S DGT KWLL A IETVYIP+K RGTLCVSSQ Sbjct: 75 TRLQACAEVRVPRVVFDKHSADGTHKWLL---AMGTDRKNAIETVYIPDKGRGTLCVSSQ 131 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 +GC L C+FC T TQ RNLT EI+ QV +A LG+ +P R+++N Sbjct: 132 IGCGLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTN 180 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 +VMMGMGEPL NFDNV +++S+ D +G S +R+TLSTSG VP I R+ E V LA+ Sbjct: 181 VVMMGMGEPLMNFDNVVRAMSVMRDDLGYGLSNKRVTLSTSGLVPMIDRLSTESDVSLAV 240 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDAL 300 SLHA ++ LR LVP+N+KYP+ L+ +C Y ++ R +TFEY ++KG+ND A Sbjct: 241 SLHAPNDKLREQLVPLNKKYPIVELMASCERYLSVNRKRDSVTFEYTLMKGVNDKQEHAH 300 Query: 301 NLIKILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 L K+++ AK+NLIPFNP+PG Y S + DI F + + + + +R Sbjct: 301 ELAKLMRQFDCAMQVKGAAKVNLIPFNPFPGTCYERSTEVDIRAFQKILLDAQILAMVRR 360 Query: 353 PRGLDILAACGQLK 366 RG DI AACGQLK Sbjct: 361 TRGDDIDAACGQLK 374 >gi|28199501|ref|NP_779815.1| hypothetical protein PD1624 [Xylella fastidiosa Temecula1] gi|81585666|sp|Q87B36|RLMN_XYLFT RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829942|sp|B2I7V5|RLMN_XYLF2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|28057616|gb|AAO29464.1| conserved hypothetical protein [Xylella fastidiosa Temecula1] gi|307578508|gb|ADN62477.1| hypothetical protein XFLM_02390 [Xylella fastidiosa subsp. fastidiosa GB514] Length = 406 Score = 295 bits (755), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 160/374 (42%), Positives = 224/374 (59%), Gaps = 26/374 (6%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 + +K++L+ + RE LE + +R+ R Q+ KWI+ R + DF+ M+D+ + +R Sbjct: 23 DVARKQNLLELDREGLERFFEDVLGEKRY---RAHQVMKWIHHRYVADFEQMTDVGKALR 79 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L + P +V +K S DGT KWLL A IETVYIP+K RGTLCVSSQ Sbjct: 80 TRLQACAEVRVPRVVFDKHSADGTHKWLL---AMGTDRKNAIETVYIPDKGRGTLCVSSQ 136 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 +GC L C+FC T TQ RNLT EI+ QV +A LG+ +P R+++N Sbjct: 137 IGCGLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTN 185 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 +VMMGMGEPL NFDNV +++S+ D +G S +R+TLSTSG VP I R+ E V LA+ Sbjct: 186 VVMMGMGEPLMNFDNVVRAMSVMRDDLGYGLSNKRVTLSTSGLVPMIDRLSTESDVSLAV 245 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDAL 300 SLHA ++ LR LVP+N+KYP+ L+ +C Y ++ R +TFEY ++KG+ND A Sbjct: 246 SLHAPNDKLREQLVPLNKKYPIVELMASCERYLSVNRKRDSVTFEYTLMKGVNDKQEHAH 305 Query: 301 NLIKILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 L K+++ AK+NLIPFNP+PG Y S + DI F + + + + +R Sbjct: 306 ELAKLMRQFDCAMQVKGAAKVNLIPFNPFPGTCYERSTEVDIRAFQKILLDAQILAMVRR 365 Query: 353 PRGLDILAACGQLK 366 RG DI AACGQLK Sbjct: 366 TRGDDIDAACGQLK 379 >gi|225024692|ref|ZP_03713884.1| hypothetical protein EIKCOROL_01574 [Eikenella corrodens ATCC 23834] gi|224942581|gb|EEG23790.1| hypothetical protein EIKCOROL_01574 [Eikenella corrodens ATCC 23834] Length = 363 Score = 295 bits (755), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 150/333 (45%), Positives = 210/333 (63%), Gaps = 16/333 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +W++ DF M+D+++ +R LN+ + P ++ + S DGTRKWLL Sbjct: 25 FRARQVMRWMHQGAAGDFDEMTDLAKSLRAKLNESAQVGVPALMAAQESRDGTRKWLLD- 83 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE RGTLC+SSQVGC+L C+FC TG Q RNL+ EI+ Q+ Sbjct: 84 ----VGTGNGVETVFIPETDRGTLCISSQVGCALECTFCSTGRQGFNRNLSTAEIIGQLW 139 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A LG P E R ISN+VMMGMGEPL N+DNV +LSI D G + Sbjct: 140 WANKALGATPKDE-----------RVISNVVMMGMGEPLANYDNVVTALSIMLDDHGYAL 188 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+T+STSG VP + R+ E++ V LA+SLHA ++ +RN +VP+N+KYPL+ L+ AC+ Sbjct: 189 SRRRVTVSTSGMVPQMDRLKEDMPVALAVSLHAPNDAIRNEIVPLNKKYPLKELMAACQR 248 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + +TFEYVML G+ND P A L++++K +P K NLIPFNP+P Y S + Sbjct: 249 YLVKAPRDFVTFEYVMLDGVNDKPEHARELLELVKDVPCKFNLIPFNPFPNSGYNRSSDE 308 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +I F + + ++G +R RG DI AACGQL Sbjct: 309 NIRVFRDILYQAGLVVTVRKTRGDDIDAACGQL 341 >gi|113969569|ref|YP_733362.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp. MR-4] gi|122943998|sp|Q0HKW2|RLMN_SHESM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|113884253|gb|ABI38305.1| radical SAM enzyme, Cfr family [Shewanella sp. MR-4] Length = 373 Score = 295 bits (755), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 165/385 (42%), Positives = 224/385 (58%), Gaps = 25/385 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+ + +G R Q+ KWIY G+ DF+ M++I++ +R L Sbjct: 4 KKINLLDLDRKAMRALFADLG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I+ PEI + S DGT K+ + +G E+ETVYIPE R TLCVSSQVGC Sbjct: 60 AARCEIVAPEISSYQKSADGTIKFAIH-----VGEGQEVETVYIPEDDRATLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ Q+ LG + R I+N+VM Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLG----------FAKDTGERPITNVVM 164 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + ++G+ + V LA+S+H Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIH 224 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ILVP+N+KYPL+ + R Y SNA R+T EYVML INDS A L Sbjct: 225 APNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHEL 284 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +++K P K+NLIPFNP+PG Y S I FS+ + G + +R RG DI AAC Sbjct: 285 AQLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344 Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383 GQL + +KR+ K QE QI+ Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369 >gi|296113393|ref|YP_003627331.1| Cfr family radical SAM protein [Moraxella catarrhalis RH4] gi|295921087|gb|ADG61438.1| Cfr family radical SAM protein [Moraxella catarrhalis RH4] gi|326559237|gb|EGE09668.1| Cfr family radical SAM protein [Moraxella catarrhalis 46P47B1] gi|326560775|gb|EGE11142.1| Cfr family radical SAM protein [Moraxella catarrhalis 103P14B1] gi|326563516|gb|EGE13775.1| Cfr family radical SAM protein [Moraxella catarrhalis 12P80B1] gi|326570119|gb|EGE20164.1| Cfr family radical SAM protein [Moraxella catarrhalis BC8] gi|326570857|gb|EGE20881.1| Cfr family radical SAM protein [Moraxella catarrhalis BC7] gi|326574406|gb|EGE24348.1| Cfr family radical SAM protein [Moraxella catarrhalis 101P30B1] gi|326576000|gb|EGE25923.1| Cfr family radical SAM protein [Moraxella catarrhalis CO72] gi|326576412|gb|EGE26321.1| Cfr family radical SAM protein [Moraxella catarrhalis O35E] Length = 395 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 163/370 (44%), Positives = 225/370 (60%), Gaps = 27/370 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+GM ++EL + +G R +Q+ KWIY G+ DF M++IS++++H L Sbjct: 18 KKVNLLGMSKDELSAFFVSLG----EKSFRATQVMKWIYQFGVTDFFEMTNISKKLQHKL 73 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVS 119 ++ ++ P + ++ S DGTRKW+ + G +ETV IP R TLC+S Sbjct: 74 HEVACVVPPTVKYKEFSQDGTRKWVFE-----VAGGSLVETVLIPADDGKQFGRKTLCIS 128 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLA-RSLLGDFPGCEDIEGMVIPSVGRK 178 SQVGC+L CSFC TG Q R+LT EI+ Q+ +A +S + + P E + Sbjct: 129 SQVGCALDCSFCSTGKQGFERDLTPSEIIGQLWVANQSYMENVPPTER---------ENR 179 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238 ++N+VMMGMGEPL N+D V S+S+ D SKRR+TLSTSG VP + + ++I V Sbjct: 180 VTNVVMMGMGEPLLNYDPVVASMSLMLDDHAFGLSKRRVTLSTSGVVPKMYDLAKDIDVA 239 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR---RITFEYVMLKGINDS 295 LAISLHA +++LRN LVPIN+KYPL+ LI A + Y N R IT EYVML G+NDS Sbjct: 240 LAISLHAPNDELRNELVPINKKYPLKDLIKAAKSYVYDENPRHKKHITIEYVMLAGVNDS 299 Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 A L+ +LK +P+KINLIPFNP+P Y S I FS + ++G+ IR RG Sbjct: 300 DEHAHQLVDLLKDLPSKINLIPFNPFPHAPYGRSSNNRIHAFSHILNQAGFVCTIRQTRG 359 Query: 356 LDILAACGQL 365 DI AACGQL Sbjct: 360 DDIDAACGQL 369 >gi|114046802|ref|YP_737352.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp. MR-7] gi|123326715|sp|Q0HX60|RLMN_SHESR RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|113888244|gb|ABI42295.1| radical SAM enzyme, Cfr family [Shewanella sp. MR-7] Length = 373 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 165/385 (42%), Positives = 224/385 (58%), Gaps = 25/385 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+ + +G R Q+ KWIY G+ DF+ M++I++ +R L Sbjct: 4 KKINLLDLDRKAMRALFADLG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I+ PEI + S DGT K+ + +G E+ETVYIPE R TLCVSSQVGC Sbjct: 60 AARCEIVAPEISSYQKSTDGTIKFAIH-----VGEGQEVETVYIPEDDRATLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ Q+ LG + R I+N+VM Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLG----------FAKDTGERPITNVVM 164 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + ++G+ + V LA+S+H Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIH 224 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ILVP+N+KYPL+ + R Y SNA R+T EYVML INDS A L Sbjct: 225 APNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHEL 284 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +++K P K+NLIPFNP+PG Y S I FS+ + G + +R RG DI AAC Sbjct: 285 AQLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344 Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383 GQL + +KR+ K QE QI+ Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369 >gi|71274608|ref|ZP_00650896.1| Conserved hypothetical protein 48 [Xylella fastidiosa Dixon] gi|170730870|ref|YP_001776303.1| hypothetical protein Xfasm12_1780 [Xylella fastidiosa M12] gi|205829927|sp|B0U494|RLMN_XYLFM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|71164340|gb|EAO14054.1| Conserved hypothetical protein 48 [Xylella fastidiosa Dixon] gi|167965663|gb|ACA12673.1| conserved hypothetical protein [Xylella fastidiosa M12] Length = 406 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 160/374 (42%), Positives = 224/374 (59%), Gaps = 26/374 (6%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 + +K++L+ + RE LE + +R+ R Q+ KWI+ R + DF+ M+D+ + +R Sbjct: 23 DVARKQNLLELDREGLERFFEDVLGEKRY---RAHQVMKWIHHRYVADFEQMTDVGKALR 79 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L + P +V +K S DGT KWLL A IETVYIP+K RGTLCVSSQ Sbjct: 80 TRLQACAEVRVPRVVFDKHSADGTHKWLL---AMGTDRKNAIETVYIPDKGRGTLCVSSQ 136 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 +GC L C+FC T TQ RNLT EI+ QV +A LG+ +P R+++N Sbjct: 137 IGCGLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQRRRLTN 185 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 +VMMGMGEPL NFDNV +++S+ D +G S +R+TLSTSG VP I R+ E V LA+ Sbjct: 186 VVMMGMGEPLMNFDNVVRAMSVMRDDLGYGLSNKRVTLSTSGLVPMIDRLSTESDVSLAV 245 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDAL 300 SLHA ++ LR LVP+N+KYP+ L+ +C Y ++ R +TFEY ++KG+ND A Sbjct: 246 SLHAPNDKLREQLVPLNKKYPIVELMASCERYLSVNRKRDSVTFEYTLMKGVNDKQEHAH 305 Query: 301 NLIKILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 L K+++ AK+NLIPFNP+PG Y S + DI F + + + + +R Sbjct: 306 ELAKLMRQFDCAMQVKGAAKVNLIPFNPFPGTCYERSTEVDIRAFQKILLDAQILAMVRR 365 Query: 353 PRGLDILAACGQLK 366 RG DI AACGQLK Sbjct: 366 TRGDDIDAACGQLK 379 >gi|24374826|ref|NP_718869.1| hypothetical protein SO_3315 [Shewanella oneidensis MR-1] gi|81589118|sp|Q8EC29|RLMN_SHEON RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|24349512|gb|AAN56313.1|AE015769_9 conserved hypothetical protein TIGR00048 [Shewanella oneidensis MR-1] Length = 373 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 165/385 (42%), Positives = 224/385 (58%), Gaps = 25/385 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+ + +G R Q+ KWIY G+ DF+ M++I++ +R L Sbjct: 4 KKINLLDLDRKAMRALFADLG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I+ PEI + S DGT K+ + +G E+ETVYIPE R TLCVSSQVGC Sbjct: 60 AARCEIVAPEISGYQKSADGTIKFAIH-----VGEGQEVETVYIPEDDRATLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ Q+ LG + R I+N+VM Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLG----------FAKETGERPITNVVM 164 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + ++G+ + V LA+S+H Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIH 224 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ILVP+N+KYPL+ + R Y SNA R+T EYVML INDS A L Sbjct: 225 APNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHEL 284 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +++K P K+NLIPFNP+PG Y S I FS+ + G + +R RG DI AAC Sbjct: 285 AQLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344 Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383 GQL + +KR+ K QE QI+ Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369 >gi|169634407|ref|YP_001708143.1| hypothetical protein ABSDF3005 [Acinetobacter baumannii SDF] gi|169797246|ref|YP_001715039.1| hypothetical protein ABAYE3266 [Acinetobacter baumannii AYE] gi|184156828|ref|YP_001845167.1| Fe-S-cluster redox protein [Acinetobacter baumannii ACICU] gi|213155960|ref|YP_002318005.1| radical SAM enzyme, Cfr family [Acinetobacter baumannii AB0057] gi|215484687|ref|YP_002326922.1| UPF0063 protein yfgB [Acinetobacter baumannii AB307-0294] gi|239500768|ref|ZP_04660078.1| UPF0063 protein yfgB [Acinetobacter baumannii AB900] gi|260556128|ref|ZP_05828347.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter baumannii ATCC 19606] gi|301346479|ref|ZP_07227220.1| UPF0063 protein yfgB [Acinetobacter baumannii AB056] gi|301510159|ref|ZP_07235396.1| UPF0063 protein yfgB [Acinetobacter baumannii AB058] gi|301594216|ref|ZP_07239224.1| UPF0063 protein yfgB [Acinetobacter baumannii AB059] gi|332851249|ref|ZP_08433322.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii 6013150] gi|332866104|ref|ZP_08436832.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii 6013113] gi|332873243|ref|ZP_08441200.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii 6014059] gi|205829659|sp|B2I3E2|RLMN_ACIBC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829701|sp|B0V4U0|RLMN_ACIBY RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829716|sp|A3M208|RLMN_ACIBT RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807143|sp|B7H072|RLMN_ACIB3 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807144|sp|B7I5G4|RLMN_ACIB5 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807145|sp|B0VKS2|RLMN_ACIBS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|169150173|emb|CAM88067.1| conserved hypothetical protein [Acinetobacter baumannii AYE] gi|169153199|emb|CAP02291.1| conserved hypothetical protein [Acinetobacter baumannii] gi|183208422|gb|ACC55820.1| predicted Fe-S-cluster redox enzyme [Acinetobacter baumannii ACICU] gi|193076307|gb|ABO10952.2| putative Fe-S-cluster redox enzyme [Acinetobacter baumannii ATCC 17978] gi|213055120|gb|ACJ40022.1| radical SAM enzyme, Cfr family [Acinetobacter baumannii AB0057] gi|213987723|gb|ACJ58022.1| UPF0063 protein yfgB [Acinetobacter baumannii AB307-0294] gi|260410183|gb|EEX03482.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter baumannii ATCC 19606] gi|332730129|gb|EGJ61456.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii 6013150] gi|332734850|gb|EGJ65943.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii 6013113] gi|332738755|gb|EGJ69625.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii 6014059] Length = 410 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 172/370 (46%), Positives = 229/370 (61%), Gaps = 25/370 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+GM R ELE+ IG + R Q+ KWI+ + DF M++IS ++R L Sbjct: 28 EKVNLLGMSRAELEKFFEDIG----EKKFRAGQVMKWIHQYFVTDFAEMTNISGKLRAKL 83 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK----SRGTLCVSS 120 Q I PE+V S DGTRKW+ R G +ETV IP + SR TLC+SS Sbjct: 84 EQICEIKAPEVVHRHYSKDGTRKWVFRVGE---GSGSLVETVLIPAEDKTGSRKTLCISS 140 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR-SLLGDFPGCEDIEGMVIPSVGRKI 179 QVGC+L CSFC TG Q R+LT +EI+ Q+ +A S + + P E R + Sbjct: 141 QVGCALDCSFCSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPVAER---------ERSV 191 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 +N+VMMGMGEPL N+D V S+ I D SKRR+TLSTSG VP I ++ ++I V L Sbjct: 192 TNVVMMGMGEPLLNYDAVLSSMHIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVAL 251 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHY---PGLSNARR-ITFEYVMLKGINDS 295 AISLHA +++LRN LVPIN+KYPL LI AC+ Y G +AR+ +T EYVML+G+ND Sbjct: 252 AISLHAPNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESARKHVTIEYVMLEGVNDQ 311 Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 P A L+K+LK +P+KINLIPFNP+P Y S + I++F + + +G+ IR RG Sbjct: 312 PEHAQQLLKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRG 371 Query: 356 LDILAACGQL 365 DI AACGQL Sbjct: 372 DDIDAACGQL 381 >gi|117919675|ref|YP_868867.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp. ANA-3] gi|205829885|sp|A0KUJ2|RLMN_SHESA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|117612007|gb|ABK47461.1| radical SAM enzyme, Cfr family [Shewanella sp. ANA-3] Length = 373 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 165/385 (42%), Positives = 224/385 (58%), Gaps = 25/385 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+ + +G R Q+ KWIY G+ DF+ M++I++ +R L Sbjct: 4 KKINLLDLDRKAMRALFADLG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I+ PEI + S DGT K+ + +G E+ETVYIPE R TLCVSSQVGC Sbjct: 60 AARCEIVAPEISSYQKSTDGTIKFAIH-----VGEGQEVETVYIPEDDRATLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ Q+ LG + R I+N+VM Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLG----------FAKETGERPITNVVM 164 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + ++G+ + V LA+S+H Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIH 224 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ILVP+N+KYPL+ + R Y SNA R+T EYVML INDS A L Sbjct: 225 APNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHEL 284 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +++K P K+NLIPFNP+PG Y S I FS+ + G + +R RG DI AAC Sbjct: 285 AQLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344 Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383 GQL + +KR+ K QE QI+ Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369 >gi|121998570|ref|YP_001003357.1| radical SAM protein [Halorhodospira halophila SL1] gi|205829772|sp|A1WXZ3|RLMN_HALHL RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|121589975|gb|ABM62555.1| 23S rRNA m(2)A-2503 methyltransferase [Halorhodospira halophila SL1] Length = 359 Score = 294 bits (753), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 159/358 (44%), Positives = 212/358 (59%), Gaps = 27/358 (7%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+G+ R L +G R R QI +W++ R + DF M+D+S+ +R L +H Sbjct: 12 LLGLDRPRLAAFFDTLG----EKRFRARQIMQWLHQRHVYDFDEMTDLSKALRQRLREHA 67 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFP-ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 + PE+ ++ + DGTRKW++R C+ E VYIPE RGTLC+SSQ GC + Sbjct: 68 RVGLPEVAADQQASDGTRKWVVRLADGNCV------EAVYIPEPKRGTLCISSQAGCPMG 121 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C+FC TG RNLTA EI+ QV +AR L EG I+NIV MGM Sbjct: 122 CTFCATGEGGFSRNLTAAEIVGQVHVARQHLP--------EGA--------ITNIVFMGM 165 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL NFD V + + +D G SKRR+T+STSG V I R+ V LA+SLHA + Sbjct: 166 GEPLLNFDPVISASRVFTDDYGFVLSKRRVTISTSGVVHAIERMQRVTDVSLAVSLHAPN 225 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 N+LRN LVP+NRK PLE L+ AC Y RRIT+EYVML G+ND A L++ L+ Sbjct: 226 NELRNQLVPLNRKNPLERLLPACHAYIAEKPHRRITWEYVMLDGVNDQDEHARELLQRLR 285 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 GIP+K+NLIPFNP+PG Y + + + F++ + G ++ IR RG DI ACGQL Sbjct: 286 GIPSKVNLIPFNPYPGARYGRTPDRQVRRFADRLLEHGLTATIRETRGDDIDGACGQL 343 >gi|322506720|gb|ADX02174.1| Fe-S-cluster redox protein [Acinetobacter baumannii 1656-2] gi|323516594|gb|ADX90975.1| Fe-S-cluster redox protein [Acinetobacter baumannii TCDC-AB0715] Length = 406 Score = 294 bits (753), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 172/370 (46%), Positives = 229/370 (61%), Gaps = 25/370 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+GM R ELE+ IG + R Q+ KWI+ + DF M++IS ++R L Sbjct: 24 EKVNLLGMSRAELEKFFEDIG----EKKFRAGQVMKWIHQYFVTDFAEMTNISGKLRAKL 79 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK----SRGTLCVSS 120 Q I PE+V S DGTRKW+ R G +ETV IP + SR TLC+SS Sbjct: 80 EQICEIKAPEVVHRHYSKDGTRKWVFRVGE---GSGSLVETVLIPAEDKTGSRKTLCISS 136 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR-SLLGDFPGCEDIEGMVIPSVGRKI 179 QVGC+L CSFC TG Q R+LT +EI+ Q+ +A S + + P E R + Sbjct: 137 QVGCALDCSFCSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPVAER---------ERSV 187 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 +N+VMMGMGEPL N+D V S+ I D SKRR+TLSTSG VP I ++ ++I V L Sbjct: 188 TNVVMMGMGEPLLNYDAVLSSMHIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVAL 247 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHY---PGLSNARR-ITFEYVMLKGINDS 295 AISLHA +++LRN LVPIN+KYPL LI AC+ Y G +AR+ +T EYVML+G+ND Sbjct: 248 AISLHAPNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESARKHVTIEYVMLEGVNDQ 307 Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 P A L+K+LK +P+KINLIPFNP+P Y S + I++F + + +G+ IR RG Sbjct: 308 PEHAQQLLKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRG 367 Query: 356 LDILAACGQL 365 DI AACGQL Sbjct: 368 DDIDAACGQL 377 >gi|261324195|ref|ZP_05963392.1| ribosomal RNA large subunit methyltransferase N [Brucella neotomae 5K33] gi|261300175|gb|EEY03672.1| ribosomal RNA large subunit methyltransferase N [Brucella neotomae 5K33] Length = 307 Score = 294 bits (753), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 136/207 (65%), Positives = 168/207 (81%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIGM REE+ AL+ G+P+R V+MR SQ+W W+YVRG+ DF M +IS+++R +L Sbjct: 27 KPSLIGMSREEMAAALIAAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 QHF+I PE+V+E+IS DGTRKWL RFP R G PVEIE+VYIPE+ RGTLC+SSQVGC+ Sbjct: 87 QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCISSQVGCT 146 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLT+EEIL Q+L AR LGDFP + +G ++P+ GRKI+NIVMM Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSF 212 GMGEPL NF+ VKK+L IASD GLSF Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSF 233 >gi|261820570|ref|YP_003258676.1| ribosomal RNA large subunit methyltransferase N [Pectobacterium wasabiae WPP163] gi|261604583|gb|ACX87069.1| radical SAM enzyme, Cfr family [Pectobacterium wasabiae WPP163] Length = 400 Score = 294 bits (753), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 164/363 (45%), Positives = 217/363 (59%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+++ E + +G R Q+ KWIY DF M+DI++ R L Sbjct: 32 EKINLLDLNRQQMRELFMSMG----EKPFRADQVMKWIYHYCCDDFNQMTDINKVFRSKL 87 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PE+VDE+ S DGT KW + +GG +ETVYIPE+ R TLCVSSQVGC Sbjct: 88 QEIAEIRAPEVVDEQRSSDGTIKWAI-----LVGGQ-RVETVYIPEEDRATLCVSSQVGC 141 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNL EI+ QV A ++G F + G R I+N+VM Sbjct: 142 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFK----VTGQ------RPITNVVM 191 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 192 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 251 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++D+RN ++PIN+KY +EM + A R Y SNA R+T EYVML IND A L Sbjct: 252 APTDDIRNEIMPINKKYNIEMFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQL 311 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AAC Sbjct: 312 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 371 Query: 363 GQL 365 GQL Sbjct: 372 GQL 374 >gi|71898147|ref|ZP_00680333.1| Conserved hypothetical protein 48 [Xylella fastidiosa Ann-1] gi|71732121|gb|EAO34177.1| Conserved hypothetical protein 48 [Xylella fastidiosa Ann-1] Length = 401 Score = 294 bits (753), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 160/374 (42%), Positives = 224/374 (59%), Gaps = 26/374 (6%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 + +K++L+ + RE LE + +R+ R Q+ KWI+ R + DF+ M+D+ + +R Sbjct: 18 DVARKQNLLELDREGLERFFEDVLGEKRY---RAHQVMKWIHHRYVADFEQMTDVGKALR 74 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L + P +V +K S DGT KWLL A IETVYIP+K RGTLCVSSQ Sbjct: 75 TRLQACAEVRVPRVVFDKHSVDGTHKWLLAMGADRKNA---IETVYIPDKGRGTLCVSSQ 131 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 +GC L C+FC T TQ RNLT EI+ QV +A LG+ +P R+++N Sbjct: 132 IGCGLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTN 180 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 +VMMGMGEPL NFDNV +++S+ D +G S +R+TLSTSG VP I R+ E V LA+ Sbjct: 181 VVMMGMGEPLMNFDNVVRAMSVMRDDLGYGLSNKRVTLSTSGLVPMIDRLSTESDVSLAV 240 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDAL 300 SLHA ++ LR LVP+N+KYP+ L+ +C Y ++ R +TFEY ++KG+ND A Sbjct: 241 SLHAPNDKLREQLVPLNKKYPIVELMASCERYLSVNPKRDSVTFEYTLMKGVNDKQEHAH 300 Query: 301 NLIKILKGI--------PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 L K+++ AK+NLIPFNP+PG Y S + DI F + + + + +R Sbjct: 301 ELAKLMRQFDCAMQVKGAAKVNLIPFNPFPGTCYERSTEVDIRAFQKILLDAQILAMVRR 360 Query: 353 PRGLDILAACGQLK 366 RG DI AACGQLK Sbjct: 361 TRGDDIDAACGQLK 374 >gi|226939612|ref|YP_002794685.1| hypothetical protein LHK_00683 [Laribacter hongkongensis HLHK9] gi|254807186|sp|C1DD41|RLMN_LARHH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|226714538|gb|ACO73676.1| Radical SAM domain containing protein [Laribacter hongkongensis HLHK9] Length = 366 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 148/333 (44%), Positives = 204/333 (61%), Gaps = 16/333 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +W++ G DF M+D+++ +R L+ ++ P ++ E+ S DGTRKWLL Sbjct: 25 FRAKQVMRWMHQMGQNDFDAMTDLAKSLRAKLHDTATVTVPSLMLEQASSDGTRKWLLD- 83 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE RGTLCVSSQVGC+L C+FC TG Q RNL+ EI+ Q+ Sbjct: 84 ----VGTGNRVETVFIPEDDRGTLCVSSQVGCALECTFCSTGRQGFNRNLSTAEIIGQLW 139 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A +G V P R ISN+VMMGMGEPL N+DNV ++ I D G Sbjct: 140 WANKSMG-----------VTPKNERVISNVVMMGMGEPLANYDNVVAAMRIMLDDHGYGL 188 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+TLSTSG VP + R+ E+ V LA+SLHA ++ +R+ +VPIN+KYPL L+ AC Sbjct: 189 SRRRVTLSTSGLVPAMDRLREDCPVALAVSLHAPNDRIRDEIVPINKKYPLRELLAACER 248 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + +TFEYVML IND P A L+ +++ +P K NLIPFNP+P Y + Sbjct: 249 YLEKAPRDFVTFEYVMLDQINDRPEHARELVALVRDVPCKFNLIPFNPFPNSGYGRASNN 308 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + F + + +GY + +R RG DI AACGQL Sbjct: 309 AVRAFRDILAEAGYITTVRKTRGEDIDAACGQL 341 >gi|90417489|ref|ZP_01225412.1| hypothetical protein GB2207_07422 [marine gamma proteobacterium HTCC2207] gi|90330730|gb|EAS46009.1| hypothetical protein GB2207_07422 [marine gamma proteobacterium HTCC2207] Length = 392 Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 157/362 (43%), Positives = 218/362 (60%), Gaps = 21/362 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ + + L +G R R +QI KWI+ GI D M++IS+ +R L Sbjct: 19 KTNLLGLSASRIGDFLESLG----EKRFRGTQILKWIHQYGIDDLNEMTNISKSLRESLA 74 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++ PE+V + S DGTRKWL++ + G IE VYIPE+ RGTLCVSSQ+GC+ Sbjct: 75 DVAEVVMPEVVSCQDSVDGTRKWLIK-----VDGGSCIEMVYIPERDRGTLCVSSQIGCA 129 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q R+LT EI+ Q+ +A F R+++N+VMM Sbjct: 130 LDCSFCATGKQGFARDLTTAEIIGQLWIAAKSFDQFD----------TKNPRRVTNVVMM 179 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+NV ++S+ D SKRR+TLST+G VP + ++G+ V LAISLHA Sbjct: 180 GMGEPLMNFNNVVDAMSLMMDDNAYGLSKRRVTLSTAGVVPELDKLGDVSDVSLAISLHA 239 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGL--SNARRITFEYVMLKGINDSPRDALNLI 303 +++LRN LVPINRKYPL I + + Y N R++T EY ++ +ND A L Sbjct: 240 PNDELRNQLVPINRKYPLVDFIGSAKRYLDKMPDNRRKVTVEYTLMDRVNDRDEHAKELS 299 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +L+ +P KINLIPFNP+PG EY + + F + ++ GY+ +RT RG DI AACG Sbjct: 300 VLLRDLPCKINLIPFNPFPGSEYKKVTKVALNRFRDILQNDGYTVTVRTTRGDDIAAACG 359 Query: 364 QL 365 QL Sbjct: 360 QL 361 >gi|260549076|ref|ZP_05823297.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter sp. RUH2624] gi|260407804|gb|EEX01276.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter sp. RUH2624] Length = 410 Score = 294 bits (752), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 171/370 (46%), Positives = 229/370 (61%), Gaps = 25/370 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+GM R +LE+ IG + R Q+ KWI+ + DF M++IS ++R L Sbjct: 28 EKVNLLGMSRAQLEKFFEDIG----EKKFRAGQVMKWIHQYFVTDFAEMTNISGKLRAKL 83 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK----SRGTLCVSS 120 Q I PE+V S DGTRKW+ R G +ETV IP + SR TLC+SS Sbjct: 84 EQICEIKAPEVVHRHYSKDGTRKWVFRVGE---GSGSLVETVLIPAEDKTGSRKTLCISS 140 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR-SLLGDFPGCEDIEGMVIPSVGRKI 179 QVGC+L CSFC TG Q R+LT +EI+ Q+ +A S + + P E R + Sbjct: 141 QVGCALDCSFCSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPVAER---------ERSV 191 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 +N+VMMGMGEPL N+D V S+ I D SKRR+TLSTSG VP I ++ ++I V L Sbjct: 192 TNVVMMGMGEPLLNYDAVLSSMHIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDIDVAL 251 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHY---PGLSNARR-ITFEYVMLKGINDS 295 AISLHA +++LRN LVPIN+KYPL LI AC+ Y G +AR+ +T EYVML+G+ND Sbjct: 252 AISLHAPNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESARKHVTIEYVMLEGVNDQ 311 Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 P A L+K+LK +P+KINLIPFNP+P Y S + I++F + + +G+ IR RG Sbjct: 312 PEHAQQLLKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRG 371 Query: 356 LDILAACGQL 365 DI AACGQL Sbjct: 372 DDIDAACGQL 381 >gi|260913157|ref|ZP_05919639.1| cfr family radical SAM enzyme [Pasteurella dagmatis ATCC 43325] gi|260632744|gb|EEX50913.1| cfr family radical SAM enzyme [Pasteurella dagmatis ATCC 43325] Length = 391 Score = 294 bits (752), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 160/363 (44%), Positives = 220/363 (60%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+++ E ++G R Q+ KWIY G DF M++I++++R L Sbjct: 23 KKINLMNLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDDFDNMTNINKKLRDKL 78 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC Sbjct: 79 KQVAEIKAPEVAVEQRSADGTIKWAMQV------GDQQVETVYIPEADRATLCVSSQVGC 132 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F + G+ R I+N+VM Sbjct: 133 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 182 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+TLSTSG VP + ++ E I V LAISLH Sbjct: 183 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKLSEMIDVALAISLH 242 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ +VPIN+KY ++ LID+ Y +SNA ++T EYVML +NDS A L Sbjct: 243 APNDELRDEIVPINKKYNIKALIDSVNRYLSVSNANHGKVTIEYVMLDHVNDSVEHAHQL 302 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P+KINLIP+NP+P Y S I F + + G++ +R RG DI AAC Sbjct: 303 AQVLKNTPSKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIVRKTRGDDIDAAC 362 Query: 363 GQL 365 GQL Sbjct: 363 GQL 365 >gi|262371647|ref|ZP_06064926.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter junii SH205] gi|262311672|gb|EEY92757.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter junii SH205] Length = 411 Score = 294 bits (752), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 171/370 (46%), Positives = 227/370 (61%), Gaps = 25/370 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+GM R ELE ++G + R Q+ KWI+ + DF M++IS ++R L Sbjct: 29 KKVNLLGMSRTELEAFFEELG----EKKFRAGQVMKWIHQYFVTDFAEMTNISGKLREKL 84 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK----SRGTLCVSS 120 + I PE+V S DGTRKW+ R G +ETV IP + +R TLC+SS Sbjct: 85 EKICEIKAPEVVHRNYSKDGTRKWVFRVGD---GEGSLVETVLIPAEDKTGARKTLCISS 141 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR-SLLGDFPGCEDIEGMVIPSVGRKI 179 QVGC+L CSFC TG Q R+LT EI+ Q+ +A S + D P E R + Sbjct: 142 QVGCALDCSFCSTGKQGFQRDLTPAEIIGQLWMANYSYMEDVPVAER---------ERTV 192 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 +N+VMMGMGEPL N+D V S+ + D SKRR+TLSTSG VP I ++ ++I V L Sbjct: 193 TNVVMMGMGEPLLNYDAVLSSMQLMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDIDVAL 252 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHY---PGLSNARR-ITFEYVMLKGINDS 295 AISLHA +++LRN LVPIN+KYPL LI AC+ Y G +ARR +T EYVML+G+ND Sbjct: 253 AISLHAPNDELRNELVPINKKYPLAQLIAACQRYLAKDGNESARRHVTIEYVMLEGVNDQ 312 Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 P A L+K+LK +P+KINLIPFNP+P Y S + I+ F + + +G+ IR RG Sbjct: 313 PEHAQQLLKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIIAFQKTLSDAGFVCTIRQTRG 372 Query: 356 LDILAACGQL 365 DI AACGQL Sbjct: 373 DDIDAACGQL 382 >gi|183599740|ref|ZP_02961233.1| hypothetical protein PROSTU_03244 [Providencia stuartii ATCC 25827] gi|188022000|gb|EDU60040.1| hypothetical protein PROSTU_03244 [Providencia stuartii ATCC 25827] Length = 393 Score = 294 bits (752), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 166/387 (42%), Positives = 226/387 (58%), Gaps = 33/387 (8%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 N +K +L+ + R+++ E ++G R Q+ KWIY DF M+DI++ +R Sbjct: 22 NNTQKINLLDLNRKQMREFFAQMG----EKPFRADQVMKWIYHYCYDDFDQMTDINKALR 77 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L + I PE+ +E+ S DGT KW + G ++ETVYIPE R TLCVSSQ Sbjct: 78 AKLKEVAEIRAPEVAEEQRSADGTIKWAITV------GDQQVETVYIPEDDRATLCVSSQ 131 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK-IS 180 VGC+L C FC T Q RNL EI+ QV A ++G + S GR+ I+ Sbjct: 132 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGS-----------LKSSGRRPIT 180 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LA Sbjct: 181 NVVMMGMGEPLLNLNNVVPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALA 240 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRD 298 ISLHA ++D+R+ +VPIN+KY +E + + R Y SNA R+T EYVML INDS Sbjct: 241 ISLHAPTDDIRDDIVPINKKYNIETFLSSVRRYLSKSNANGGRVTVEYVMLDHINDSIEQ 300 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L + LK P+KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI Sbjct: 301 AHQLAECLKDTPSKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDI 360 Query: 359 LAACGQL---------KSLSKRIPKVP 376 AACGQL ++L KR+ P Sbjct: 361 DAACGQLAGEVIDRTKRTLKKRMAGEP 387 >gi|39996213|ref|NP_952164.1| ribosomal RNA large subunit methyltransferase N [Geobacter sulfurreducens PCA] gi|81702805|sp|Q74E53|RLMN_GEOSL RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|39982978|gb|AAR34437.1| conserved hypothetical protein TIGR00048 [Geobacter sulfurreducens PCA] gi|307634805|gb|ADI83948.2| 23S rRNA (2-methyl-A2503)-methyltransferase [Geobacter sulfurreducens KN400] Length = 360 Score = 293 bits (751), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 162/358 (45%), Positives = 217/358 (60%), Gaps = 33/358 (9%) Query: 11 GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ--HF 68 G+ +ELE LL G R R QI+KW+Y RG F M+D+++E+R L + Sbjct: 9 GLSIDELERFLLGKG----KERYRARQIFKWLYQRGATSFAEMTDLAKELRRDLEETARI 64 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 S + PE ++ IS DGTRK+L R C +E+V IPE+ R TLC+SSQVGC++ C Sbjct: 65 STLSPEALE--ISRDGTRKYLFRLDDGC-----SVESVLIPEEDRNTLCISSQVGCAMAC 117 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TGT +L RNLT EI+ QV + D P + NIV MGMG Sbjct: 118 EFCLTGTFRLTRNLTTAEIVNQVCAVQR---DVP----------------VRNIVFMGMG 158 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN 248 EPL N DNV ++L I GL FS RRIT+ST+G VP + R+G + V LA+SL+A ++ Sbjct: 159 EPLANLDNVIRALQIMLHDDGLQFSTRRITVSTAGLVPEMERLGRSVTVNLAVSLNATTD 218 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 +LR+ ++PINRKYPL +L+DACR +P L R+IT EYV+L G+ND+ DA L+++L Sbjct: 219 ELRDRIMPINRKYPLAVLLDACRRFP-LPGRRKITIEYVLLGGVNDTLDDAKRLVRLLSD 277 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 IP+KINLIPFN GC + Q I F + ++ R+ RG DI AACGQLK Sbjct: 278 IPSKINLIPFNEHEGCSFRSPSQDAIDRFHRYLLDKHFTVITRSSRGADISAACGQLK 335 >gi|146329686|ref|YP_001209425.1| hypothetical protein DNO_0514 [Dichelobacter nodosus VCS1703A] gi|205829748|sp|A5EVN1|RLMN_DICNV RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|146233156|gb|ABQ14134.1| conserved hypothetical protein [Dichelobacter nodosus VCS1703A] Length = 364 Score = 293 bits (751), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 159/369 (43%), Positives = 226/369 (61%), Gaps = 23/369 (6%) Query: 19 EALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE 78 +AL + Q R Q+ KW+Y + DF+ M+D+S+++R +L++ +I P+++ + Sbjct: 13 KALADWFVAQGEQPFRAKQVLKWLYHERVYDFERMTDLSKKLRAMLSEKACVILPQVIAD 72 Query: 79 KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKL 138 K + DGTRKW+ ++ C IE V+IPE RGTLC+SSQ GC+L C FC T Sbjct: 73 KTARDGTRKWVFQYA--CTNS---IEAVFIPEDDRGTLCISSQAGCALACPFCSTARAGF 127 Query: 139 VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVK 198 RNLT EI++QV LA+ L+ CE R I+N+V+MGMGEPL NF+ V Sbjct: 128 NRNLTTGEIVVQVWLAKELVH----CER------NGNSRLITNVVLMGMGEPLINFNQVL 177 Query: 199 KSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPIN 258 + I G SKRR+TLSTSG VP I ++ E + LA+SLHA +++LRN +VPIN Sbjct: 178 PATEIFMSDWGFGLSKRRVTLSTSGVVPAIHKLREVTDLSLAVSLHAPNDELRNKIVPIN 237 Query: 259 RKYPLEMLIDACRHYPGLSNARR---ITFEYVMLKGINDSPRDALNLIKILKGIPAKINL 315 ++Y L+ LI+AC Y N ++ IT+EYVMLKG+ND+ A L +L+ +P KINL Sbjct: 238 QRYGLKALIEACALYA--ENNKQHGGITWEYVMLKGVNDTLEHAQQLADLLRNVPGKINL 295 Query: 316 IPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKV 375 IPFN +P + CS +DIV F + ++++GY + IR RG DI AACGQL R+ Sbjct: 296 IPFNEFPNSPFQCSSWEDIVRFQQFLQKAGYIATIRKTRGDDIDAACGQLVG---RVNDR 352 Query: 376 PRQEMQITG 384 R+E Q G Sbjct: 353 IRRERQFQG 361 >gi|157374568|ref|YP_001473168.1| hypothetical protein Ssed_1429 [Shewanella sediminis HAW-EB3] gi|205829886|sp|A8FT67|RLMN_SHESH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|157316942|gb|ABV36040.1| radical SAM enzyme, Cfr family [Shewanella sediminis HAW-EB3] Length = 373 Score = 293 bits (750), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 167/385 (43%), Positives = 228/385 (59%), Gaps = 25/385 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+ L ++G R Q+ KWIY G DF M++I++ +R L Sbjct: 4 KKINLLDLDRKGLRALFTEMG----EKPFRADQLMKWIYHFGETDFDAMNNINKVLRAKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + ++ PEI + S DGT K+ + +G E+ETVYIPE+ R TLCVSSQVGC Sbjct: 60 SARCEVVAPEISSYQKSADGTIKFAIN-----VGQGQEVETVYIPEEDRATLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV + +F G + G R I+N+VM Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIIGQVWR----VANFIGFQKETGE------RPITNVVM 164 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G S SKRR+T+STSG VP + ++G+ + V LA+S+H Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTVSTSGVVPALDKLGDALDVALAVSIH 224 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR++LVP+N+KYPLE + R Y SNA R+T EYVML INDS A L Sbjct: 225 APNDELRDVLVPVNKKYPLEEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHEL 284 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K++K P KINLIPFNP+PG Y S I FS+ + G + +R RG DI AAC Sbjct: 285 AKLMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344 Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383 GQL + +KR+ K Q+ QI+ Sbjct: 345 GQLAGDIRDRTKRLAKKRMQDSQIS 369 >gi|253689386|ref|YP_003018576.1| radical SAM enzyme, Cfr family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755964|gb|ACT14040.1| radical SAM enzyme, Cfr family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 419 Score = 293 bits (750), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 163/363 (44%), Positives = 217/363 (59%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+++ + + +G R Q+ KWIY DF M+DI++ R L Sbjct: 51 EKINLLDLNRQQMRDLFISMG----EKPFRADQVMKWIYHYCCDDFNQMTDINKVFRSKL 106 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PE+VDE+ S DGT KW + +GG +ETVYIPE+ R TLCVSSQVGC Sbjct: 107 QEIAEIRAPEVVDEQRSSDGTIKWAI-----LVGGQ-RVETVYIPEEDRATLCVSSQVGC 160 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNL EI+ QV A ++G F + G R I+N+VM Sbjct: 161 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFK----VTGQ------RPITNVVM 210 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 211 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 270 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++D+RN ++PIN+KY +EM + A R Y SNA R+T EYVML IND A L Sbjct: 271 APTDDIRNEIMPINKKYNIEMFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQL 330 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AAC Sbjct: 331 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 390 Query: 363 GQL 365 GQL Sbjct: 391 GQL 393 >gi|293394872|ref|ZP_06639162.1| cfr family radical SAM enzyme [Serratia odorifera DSM 4582] gi|291422623|gb|EFE95862.1| cfr family radical SAM enzyme [Serratia odorifera DSM 4582] Length = 398 Score = 293 bits (750), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 160/362 (44%), Positives = 218/362 (60%), Gaps = 22/362 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R++L E ++G R Q+ KW+Y DF+ M+DI++ +R+ L Sbjct: 31 KINLLDLNRQQLREFFAELG----EKPFRADQVMKWMYHYCCDDFEQMTDINKVLRNKLQ 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I PE+ +E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC+ Sbjct: 87 SIAEIRAPEVAEEQRSADGTIKWAIKV------GDQQVETVYIPEADRATLCVSSQVGCA 140 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + + G R I+N+VMM Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----AQKVTGQ------RPITNVVMM 190 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 191 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++ +R+ +VPINRKY +E + + R Y SNA R+T EYVML INDS DA L Sbjct: 251 PNDTIRDEIVPINRKYNIETFLSSVRRYLEKSNANQGRVTVEYVMLDHINDSTDDAHQLA 310 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AACG Sbjct: 311 EVLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 370 Query: 364 QL 365 QL Sbjct: 371 QL 372 >gi|157371847|ref|YP_001479836.1| ribosomal RNA large subunit methyltransferase N [Serratia proteamaculans 568] gi|205829876|sp|A8GHW8|RLMN_SERP5 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|157323611|gb|ABV42708.1| radical SAM enzyme, Cfr family [Serratia proteamaculans 568] Length = 398 Score = 293 bits (749), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 160/364 (43%), Positives = 217/364 (59%), Gaps = 22/364 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K +L+ + R++L E K+G R Q+ KW+Y DF+ M+DI++ +R+ Sbjct: 29 VAKINLLDLNRQQLREFFAKMG----EKPFRADQVMKWMYHYCCDDFEQMTDINKVLRNK 84 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L I PE+ +E+ S DGT KW ++ G ++ETVYIP+ R TLCVSSQVG Sbjct: 85 LQSVAEIRAPEVAEEQRSADGTIKWAIKV------GDQQVETVYIPDGDRATLCVSSQVG 138 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L C FC T Q RNL EI+ QV A ++G + R I+N+V Sbjct: 139 CALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGALKVTGE----------RPITNVV 188 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISL Sbjct: 189 MMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISL 248 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALN 301 HA ++ +R+ +VPINRKY +E + A R Y SNA R+T EYVML INDS DA Sbjct: 249 HAPNDKIRDDIVPINRKYNIETFLAAVRRYLAKSNANQGRVTVEYVMLDHINDSTDDAHQ 308 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AA Sbjct: 309 LAEVLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAA 368 Query: 362 CGQL 365 CGQL Sbjct: 369 CGQL 372 >gi|288941010|ref|YP_003443250.1| radical SAM enzyme, Cfr family [Allochromatium vinosum DSM 180] gi|288896382|gb|ADC62218.1| radical SAM enzyme, Cfr family [Allochromatium vinosum DSM 180] Length = 365 Score = 293 bits (749), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 155/348 (44%), Positives = 211/348 (60%), Gaps = 26/348 (7%) Query: 18 EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD 77 E + +G H R ++KW++ G+ DF M+D+ + +R +L + I P I+ Sbjct: 19 ESLVTALGFKAFHGR----NLFKWMHKHGVVDFDAMTDLPKSLRTVLLETVEIRLPRILQ 74 Query: 78 EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137 S DGT KW++ + G +ETV+IPE R T+CVSSQVGC+L C+FC T Q Sbjct: 75 THPSADGTVKWVMEL----VDGQ-RVETVFIPEGKRSTICVSSQVGCALECAFCATARQG 129 Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197 RNL+ EI+ QV A LG P +N+VMMGMGEPL NF+ Sbjct: 130 FNRNLSVAEIIGQVWHAARQLGAAP-----------------TNVVMMGMGEPLANFEAA 172 Query: 198 KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPI 257 K++ + D + +K+R+TLSTSG VPNI R+ E V LA+SLHA +++LR+ LVPI Sbjct: 173 VKAMDVMQDDLAYMLAKQRVTLSTSGIVPNIYRLREVSDVSLAVSLHAPNDELRDELVPI 232 Query: 258 NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIP 317 NRKYPL LI AC+HY R+IT+EYVML GINDSP A LI++L+G+P+K+NLIP Sbjct: 233 NRKYPLAELIPACKHYVAGDKRRKITWEYVMLDGINDSPAHAKQLIRLLEGVPSKVNLIP 292 Query: 318 FNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 FNP+ G ++ S + TF E + RSG + R RG +I AACGQL Sbjct: 293 FNPFTGSDFGTSPPDRVETFRERLARSGIFAMTRKTRGDEIAAACGQL 340 >gi|332162639|ref|YP_004299216.1| hypothetical protein YE105_C3019 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666869|gb|ADZ43513.1| hypothetical protein YE105_C3019 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330859271|emb|CBX69621.1| ribosomal RNA large subunit methyltransferase N [Yersinia enterocolitica W22703] Length = 397 Score = 293 bits (749), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 161/363 (44%), Positives = 217/363 (59%), Gaps = 24/363 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E ++G R Q+ KW+Y DF+ M+DI++ +R L Sbjct: 30 KINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCFDDFEQMTDINKVLRAKLQ 85 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+ +E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC+ Sbjct: 86 RVAEIRAPEVAEEQRSTDGTIKWAIKV------GDQQVETVYIPEGDRATLCVSSQVGCA 139 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIVM 184 L C FC T Q RNL EI+ QV A ++G + S G R I+N+VM Sbjct: 140 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGS-----------LKSTGTRPITNVVM 188 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 189 MGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 248 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++D+R+ +VPINRKY +E + A R Y SNA R+T EYVML INDS A L Sbjct: 249 APTDDIRDEIVPINRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQL 308 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AAC Sbjct: 309 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 368 Query: 363 GQL 365 GQL Sbjct: 369 GQL 371 >gi|258545517|ref|ZP_05705751.1| Cfr family radical SAM enzyme [Cardiobacterium hominis ATCC 15826] gi|258519217|gb|EEV88076.1| Cfr family radical SAM enzyme [Cardiobacterium hominis ATCC 15826] Length = 367 Score = 292 bits (748), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 155/348 (44%), Positives = 208/348 (59%), Gaps = 16/348 (4%) Query: 19 EALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE 78 EA+ I R Q+ KWIY + DF M+D+S+ +R L + +P I+ + Sbjct: 13 EAMTAWFIDNGEKPFRAKQLLKWIYHERVTDFDAMTDLSKPLREKLKNIAELRFPTIIAD 72 Query: 79 KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKL 138 K + DGTRKW+ R+ IE V+IPE RGTLC+SSQ GC+L C FC TG Sbjct: 73 KTASDGTRKWIFRYDC-----GNSIEAVFIPEDDRGTLCISSQAGCALACPFCSTGHAGF 127 Query: 139 VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVK 198 RNLT EI++QV LA+ +L C D G R ++N+V+MGMGEPL NF+NV Sbjct: 128 NRNLTTGEIIVQVWLAKDILN----C-DRHGN-----NRVVTNVVLMGMGEPLVNFNNVL 177 Query: 199 KSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPIN 258 + + D SKRR+TLSTSG VP I + E + LA+SLHA +++LRN +VP+N Sbjct: 178 PATRLMMDDHAFGLSKRRVTLSTSGIVPAIHALREVTDLSLAVSLHAPNDELRNQIVPVN 237 Query: 259 RKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIP 317 +Y L L+DAC Y + +T+EYVML+ +NDS A L ++L+GIP KINLIP Sbjct: 238 ARYGLAALLDACHQYVRHNGQHGGVTWEYVMLRDVNDSLEHARQLAELLRGIPGKINLIP 297 Query: 318 FNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 FN +PG Y CS + DI+ F + +GY + IR RG DI AACGQL Sbjct: 298 FNAFPGSRYQCSRRSDILAFQRYLTENGYVATIRKTRGEDIDAACGQL 345 >gi|238763546|ref|ZP_04624507.1| Ribosomal RNA large subunit methyltransferase N [Yersinia kristensenii ATCC 33638] gi|238698178|gb|EEP90934.1| Ribosomal RNA large subunit methyltransferase N [Yersinia kristensenii ATCC 33638] Length = 398 Score = 292 bits (748), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 160/363 (44%), Positives = 217/363 (59%), Gaps = 24/363 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E ++G R Q+ KW+Y DF+ M+DI++ +R L Sbjct: 31 KINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKVLRAKLQ 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+ +E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC+ Sbjct: 87 RVAEIRAPEVAEEQRSTDGTIKWAIKV------GDQQVETVYIPEGDRATLCVSSQVGCA 140 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIVM 184 L C FC T Q RNL EI+ QV A ++G + + G R I+N+VM Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG-----------AVKATGIRPITNVVM 189 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 190 MGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 249 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++D+R+ +VPINRKY +E + A R Y SNA R+T EYVML INDS A L Sbjct: 250 APTDDIRDEIVPINRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQL 309 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AAC Sbjct: 310 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 369 Query: 363 GQL 365 GQL Sbjct: 370 GQL 372 >gi|332970237|gb|EGK09230.1| cfr family radical SAM enzyme [Psychrobacter sp. 1501(2011)] Length = 403 Score = 292 bits (748), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 160/368 (43%), Positives = 222/368 (60%), Gaps = 25/368 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +++GM +E+L + +IG R +Q+ KWIY G+ DF M+++S+ +R L+ Sbjct: 25 KTNILGMSQEQLGDYFKQIG----EKPFRATQVMKWIYQHGVTDFAQMTNLSKGLREKLS 80 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVSS 120 + + PE+V ++ S DGTRKW+ + + G +ETV IP R TLC+SS Sbjct: 81 EKACVETPEVVHKEFSEDGTRKWVFK-----VAGGSLVETVLIPADDSKVNGRKTLCISS 135 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC+L CSFC TG Q R+LTA EI+ Q+ +A + +EG+ ++ Sbjct: 136 QVGCALDCSFCSTGKQGFERDLTAAEIIGQLWVANASY--------MEGVDSSEWQNNVT 187 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+ V S+S+ SKRR+TLSTSG VP + + ++I V LA Sbjct: 188 NVVMMGMGEPLLNYKPVVSSMSLMLSDHAYGLSKRRVTLSTSGVVPKMYDLYKDIDVALA 247 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR---RITFEYVMLKGINDSPR 297 ISLHA +++LRN LVPIN+KYPL LI A + Y +N R +T EYVML G+NDS Sbjct: 248 ISLHAPNDELRNELVPINKKYPLSELIAAAKAYVHDNNPRHKKHVTIEYVMLAGVNDSDE 307 Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 A L+ +L+G+P+KINLIPFNP+P Y S I FS + +G+ IR RG D Sbjct: 308 HAHQLVALLEGLPSKINLIPFNPFPHAPYDRSSNNRIHAFSNILNNAGFVCTIRQTRGDD 367 Query: 358 ILAACGQL 365 I AACGQL Sbjct: 368 IDAACGQL 375 >gi|326559876|gb|EGE10276.1| Cfr family radical SAM protein [Moraxella catarrhalis 7169] gi|326569638|gb|EGE19690.1| Cfr family radical SAM protein [Moraxella catarrhalis BC1] Length = 395 Score = 292 bits (748), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 162/370 (43%), Positives = 225/370 (60%), Gaps = 27/370 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+GM ++EL + +G R +Q+ KWIY G+ DF M++IS+++++ L Sbjct: 18 KKVNLLGMSKDELSAFFVSLG----EKSFRATQVMKWIYQFGVTDFFEMTNISKKLQYKL 73 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVS 119 ++ ++ P + ++ S DGTRKW+ + G +ETV IP R TLC+S Sbjct: 74 HEVACVVPPTVKYKEFSQDGTRKWVFE-----VAGGSLVETVLIPADDGKQFGRKTLCIS 128 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLA-RSLLGDFPGCEDIEGMVIPSVGRK 178 SQVGC+L CSFC TG Q R+LT EI+ Q+ +A +S + + P E + Sbjct: 129 SQVGCALDCSFCSTGKQGFERDLTPSEIIGQLWVANQSYMENVPPTER---------ENR 179 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238 ++N+VMMGMGEPL N+D V S+S+ D SKRR+TLSTSG VP + + ++I V Sbjct: 180 VTNVVMMGMGEPLLNYDPVVASMSLMLDDHAFGLSKRRVTLSTSGVVPKMYDLAKDIDVA 239 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR---RITFEYVMLKGINDS 295 LAISLHA +++LRN LVPIN+KYPL+ LI A + Y N R IT EYVML G+NDS Sbjct: 240 LAISLHAPNDELRNELVPINKKYPLKDLIKAAKSYVYDENPRHKKHITIEYVMLAGVNDS 299 Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 A L+ +LK +P+KINLIPFNP+P Y S I FS + ++G+ IR RG Sbjct: 300 DEHAHQLVDLLKDLPSKINLIPFNPFPHAPYGRSSNNRIHAFSHILNQAGFVCTIRQTRG 359 Query: 356 LDILAACGQL 365 DI AACGQL Sbjct: 360 DDIDAACGQL 369 >gi|238753878|ref|ZP_04615238.1| Ribosomal RNA large subunit methyltransferase N [Yersinia ruckeri ATCC 29473] gi|238707866|gb|EEQ00224.1| Ribosomal RNA large subunit methyltransferase N [Yersinia ruckeri ATCC 29473] Length = 398 Score = 292 bits (748), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 161/363 (44%), Positives = 217/363 (59%), Gaps = 24/363 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E ++G R Q+ KW+Y DF+ M+DI++ +R L Sbjct: 31 KINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKVLRAKLQ 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+ +E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC+ Sbjct: 87 RVAEIRAPEVAEEQRSTDGTIKWAIKV------GDQQVETVYIPEGDRATLCVSSQVGCA 140 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIVM 184 L C FC T Q RNL EI+ QV A ++G + S G R I+N+VM Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGS-----------LKSTGTRPITNVVM 189 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 190 MGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 249 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++D+R+ +VPINRKY +E + A R Y SNA R+T EYVML INDS A L Sbjct: 250 APTDDIRDEIVPINRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQL 309 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AAC Sbjct: 310 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 369 Query: 363 GQL 365 GQL Sbjct: 370 GQL 372 >gi|253988864|ref|YP_003040220.1| ribosomal RNA large subunit methyltransferase N [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780314|emb|CAQ83475.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 392 Score = 292 bits (748), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 161/363 (44%), Positives = 217/363 (59%), Gaps = 24/363 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ + + +G R Q+ KWIY DF+ M+DI++ +R L Sbjct: 25 KINLLDLDRKQMRQFFVDMG----EKPFRADQVMKWIYHYCYDDFEQMTDINKTLRAKLQ 80 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 Q I PE+ +E+ S DGT KW + G ++ETVYIPE R TLCVSSQVGC+ Sbjct: 81 QVAEIRAPEVAEEQRSADGTIKWAISV------GDQQVETVYIPEDDRATLCVSSQVGCA 134 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVM 184 L C FC T Q RNL EI+ QV A ++G + S GR+ I+N+VM Sbjct: 135 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGS-----------LKSSGRRPITNVVM 183 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 184 MGMGEPLLNLNNVVPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 243 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++D+R+ +VPINRKY +E + R Y SNA R+T EYVML INDS A L Sbjct: 244 APTDDIRDDIVPINRKYNIEQFLAGVRRYLAKSNANQGRVTVEYVMLDHINDSVEQAHQL 303 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + LK P+KINLIP+NP+PG Y S I F++ + G+++ +R RG DI AAC Sbjct: 304 AECLKDTPSKINLIPWNPFPGAPYGRSSNSRIDRFAKVLMGYGFTTIVRKTRGDDIDAAC 363 Query: 363 GQL 365 GQL Sbjct: 364 GQL 366 >gi|127512219|ref|YP_001093416.1| hypothetical protein Shew_1287 [Shewanella loihica PV-4] gi|205829882|sp|A3QCF9|RLMN_SHELP RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|126637514|gb|ABO23157.1| radical SAM enzyme, Cfr family [Shewanella loihica PV-4] Length = 373 Score = 292 bits (748), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 164/385 (42%), Positives = 226/385 (58%), Gaps = 25/385 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+ L ++G R Q+ KW+Y G+ DF+ M++I++ +R L Sbjct: 4 KKINLLDLDRKGLRALFTEMG----EKPFRADQLMKWLYHFGVSDFEQMTNINKVLRAKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 ++ PEI + S DGT K+ + +G E+ETVYIPE+ R TLCVSSQVGC Sbjct: 60 AARCEVVAPEISSYQKSADGTIKFAIN-----VGNGQEVETVYIPEEDRATLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ Q+ LG + R ISN+VM Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLG----------FQKETGERPISNVVM 164 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G S SKRR+T+STSG VP + +G+ + V LA+S+H Sbjct: 165 MGMGEPLLNLKNVMPAIDIMLDDFGFSLSKRRVTVSTSGVVPALDILGDNLDVALAVSIH 224 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR++LVP+N+KYPL+ + A R Y SNA R+T EYVML INDS A L Sbjct: 225 APNDELRDVLVPVNKKYPLQEFLAAIRRYLAKSNANRGRVTLEYVMLDHINDSTDQAHEL 284 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +++K P KINLIPFNP+PG Y S I FS+ + G + +R RG DI AAC Sbjct: 285 AELMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344 Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383 GQL + +KR+ K Q+ QI+ Sbjct: 345 GQLAGDIRDRTKRLAKKRMQDSQIS 369 >gi|186896255|ref|YP_001873367.1| ribosomal RNA large subunit methyltransferase N [Yersinia pseudotuberculosis PB1/+] gi|205829930|sp|B2K9Q3|RLMN_YERPB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|186699281|gb|ACC89910.1| radical SAM enzyme, Cfr family [Yersinia pseudotuberculosis PB1/+] Length = 398 Score = 292 bits (748), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 160/363 (44%), Positives = 217/363 (59%), Gaps = 24/363 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E ++G R Q+ KW+Y DF+ M+DI++ +R L Sbjct: 31 KINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKGLRAKLQ 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+ +E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC+ Sbjct: 87 RVAEIRAPEVAEEQRSVDGTIKWAIKV------GDQQVETVYIPEADRATLCVSSQVGCA 140 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIVM 184 L C FC T Q RNL EI+ QV A ++G + S G R I+N+VM Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGS-----------LKSTGTRPITNVVM 189 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 190 MGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 249 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHY--PGLSNARRITFEYVMLKGINDSPRDALNL 302 A ++D+R+ +VPINRKY +EM + A R Y +N R+T EYVML INDS A L Sbjct: 250 APTDDIRDEIVPINRKYNIEMFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSTEQAHQL 309 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AAC Sbjct: 310 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 369 Query: 363 GQL 365 GQL Sbjct: 370 GQL 372 >gi|119775502|ref|YP_928242.1| ribosomal RNA large subunit methyltransferase N [Shewanella amazonensis SB2B] gi|205829877|sp|A1S866|RLMN_SHEAM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|119768002|gb|ABM00573.1| conserved hypothetical protein [Shewanella amazonensis SB2B] Length = 373 Score = 292 bits (748), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 162/357 (45%), Positives = 213/357 (59%), Gaps = 21/357 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI +WIY G+ DF+ M++I++ +R L I+ PEI + S DGT K+ + Sbjct: 28 FRAQQIMQWIYHFGVSDFEQMTNINKAMRAKLAARCEIVAPEITSYQKSSDGTIKFAIN- 86 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G E+ETVYIPE R TLCVSSQVGC+L C+FC T Q RNLT EI+ Q+ Sbjct: 87 ----VGQGQEVETVYIPEDDRATLCVSSQVGCALECTFCSTAQQGFNRNLTVSEIVGQIW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 LG + R ISN+VMMGMGEPL N NV +++I D G Sbjct: 143 RVSHFLG----------FQKETGERPISNVVMMGMGEPLLNLANVVPAMNIMLDDYGFGL 192 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 SKRR+TLSTSG VP + ++G+ I V LA+S+HA +++LR++LVPIN+KYPL+ + A R Sbjct: 193 SKRRVTLSTSGVVPALDKLGDVIDVALAVSIHAPNDELRDVLVPINKKYPLQEFLAAIRR 252 Query: 273 YPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 Y SNA R+T EYVML INDS A L K++K P KINLIPFNP+PG Y S Sbjct: 253 YLEKSNANRGRVTLEYVMLDHINDSTDQAHELAKLMKDTPCKINLIPFNPYPGSPYGRSS 312 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL----KSLSKRIPKVPRQEMQIT 383 I F++ + + +R RG DI AACGQL + +KR+ K QE QI+ Sbjct: 313 NSRIDRFAKVLMEYDLTVIVRKTRGDDIDAACGQLAGDIRDRTKRLAKKRMQESQIS 369 >gi|308187773|ref|YP_003931904.1| UPF0063 protein yfgB [Pantoea vagans C9-1] gi|308058283|gb|ADO10455.1| UPF0063 protein yfgB [Pantoea vagans C9-1] Length = 389 Score = 292 bits (747), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 166/379 (43%), Positives = 225/379 (59%), Gaps = 23/379 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+++ E L +G R Q+ KWIY DF+ M+DI++++R+ L Sbjct: 21 QKINLLDLNRQQMREFFLSLG----EKPFRADQVMKWIYHYCCDDFEQMTDINKKLRNRL 76 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PE+ +E S DGT KW +R G +ETVYIPE R TLCVSSQVGC Sbjct: 77 MELTEIRAPEVAEEMRSTDGTIKWAIRV------GDQLVETVYIPEGDRATLCVSSQVGC 130 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNL EI+ QV A ++G I G R I+N+VM Sbjct: 131 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKITGQ------RPITNVVM 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 181 MGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 240 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++ LR+ +VPIN+KY +E + A + Y G SNA R+T EYV+L +NDS DA L Sbjct: 241 APNDKLRDDIVPINKKYNIETFLAAVKRYIGKSNANQGRVTIEYVLLDHVNDSTDDAHEL 300 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AAC Sbjct: 301 AALLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTTIVRKTRGDDIDAAC 360 Query: 363 GQLK-SLSKRIPKVPRQEM 380 GQL + R + R++M Sbjct: 361 GQLAGEVIDRTKRTLRKKM 379 >gi|253999428|ref|YP_003051491.1| radical SAM enzyme, Cfr family [Methylovorus sp. SIP3-4] gi|253986107|gb|ACT50964.1| radical SAM enzyme, Cfr family [Methylovorus sp. SIP3-4] Length = 367 Score = 292 bits (747), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 154/333 (46%), Positives = 205/333 (61%), Gaps = 16/333 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +W++ G+ DF M+DI++ +R L I P I E+IS DGTRKWL+ Sbjct: 25 FRAKQLMRWMHHFGVHDFDQMTDIAKSLRDKLKDQAEITPPGIKLEQISEDGTRKWLID- 83 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G +ETV+IPE RGTLCVSSQVGC+L C+FC TG Q RNLT EI+ Q+ Sbjct: 84 ----AGTGNGVETVFIPEAERGTLCVSSQVGCALECTFCSTGRQGFNRNLTVSEIIGQLW 139 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 +A LG P + R ISN+VMMGMGEPL NFDNV +L+I D Sbjct: 140 VANKALGRDPKGD-----------RIISNVVMMGMGEPLANFDNVVTALNIMLDDSAYGL 188 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+T+STSG VP + R+ E V LA+SLHA ++ LR+++VPIN+KYP++ L+ AC+ Sbjct: 189 SRRRVTVSTSGMVPAMDRLREACPVALAVSLHAPNDALRDVIVPINKKYPIKELMAACQR 248 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + +TFEYVML G+NDS A L+ I++ +P K NLIPFNP+P Y S + Sbjct: 249 YLEKAPRDFVTFEYVMLDGVNDSVEHARQLLDIVRDVPCKFNLIPFNPFPNSGYDTSKPE 308 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F + + ++ Y R RG DI AACGQL Sbjct: 309 AIRRFRDVLMQADYVVTTRKTRGDDIDAACGQL 341 >gi|227112689|ref|ZP_03826345.1| hypothetical protein PcarbP_06994 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 418 Score = 292 bits (747), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 162/363 (44%), Positives = 216/363 (59%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+++ + + +G R Q+ KWIY DF M+DI++ R L Sbjct: 50 EKINLLDLNRQQMRDLFMSMG----EKPFRADQVMKWIYHYCCDDFNQMTDINKVFRSKL 105 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PE+VDE+ S DGT KW + +GG +ETVYIPE+ R TLCVSSQVGC Sbjct: 106 QEIAEIRAPEVVDEQRSSDGTIKWAI-----LVGGQ-RVETVYIPEEDRATLCVSSQVGC 159 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNL EI+ QV A ++G F + G R I+N+VM Sbjct: 160 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFK----VTGQ------RPITNVVM 209 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 210 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 269 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++D+RN ++PIN+KY +E + A R Y SNA R+T EYVML IND A L Sbjct: 270 APTDDIRNEIMPINKKYNIETFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQL 329 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AAC Sbjct: 330 AECLKNTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 389 Query: 363 GQL 365 GQL Sbjct: 390 GQL 392 >gi|123441415|ref|YP_001005402.1| ribosomal RNA large subunit methyltransferase N [Yersinia enterocolitica subsp. enterocolitica 8081] gi|205829928|sp|A1JKR9|RLMN_YERE8 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|122088376|emb|CAL11167.1| conserved hypothetical protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 398 Score = 292 bits (747), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 160/363 (44%), Positives = 217/363 (59%), Gaps = 24/363 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E ++G R Q+ KW+Y DF+ M+DI++ +R L Sbjct: 31 KINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKGLRAKLQ 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+ +E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC+ Sbjct: 87 RVAEIRAPEVAEEQRSTDGTIKWAIKV------GDQQVETVYIPEGDRATLCVSSQVGCA 140 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIVM 184 L C FC T Q RNL EI+ QV A ++G + + G R I+N+VM Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG-----------AVKATGIRPITNVVM 189 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 190 MGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 249 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++D+R+ +VPINRKY +E + A R Y SNA R+T EYVML INDS A L Sbjct: 250 APTDDIRDEIVPINRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQL 309 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AAC Sbjct: 310 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 369 Query: 363 GQL 365 GQL Sbjct: 370 GQL 372 >gi|119897215|ref|YP_932428.1| hypothetical protein azo0924 [Azoarcus sp. BH72] gi|205829650|sp|A1K3Y6|RLMN_AZOSB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|119669628|emb|CAL93541.1| conserved hypothetical protein [Azoarcus sp. BH72] Length = 375 Score = 292 bits (747), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 156/334 (46%), Positives = 208/334 (62%), Gaps = 7/334 (2%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +W++ G DF M+D+++ +R L + I P V + +S DGTRKWLL Sbjct: 27 FRARQVMRWMHREGCDDFDQMTDVAKSLRAKLKEIAVIRPPVPVRDSVSSDGTRKWLLD- 85 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE +RGTLCVSSQ GC+L C+FC TG Q RNLTA EI+ Q+ Sbjct: 86 ----VGNANAVETVFIPETNRGTLCVSSQAGCALDCAFCSTGKQGFNRNLTAAEIIGQLW 141 Query: 153 LARSLLGDF-PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 LA LLG D+E + GR ISN+VMMGMGEPL NFDNV +L + D Sbjct: 142 LANKLLGAARDAAADLEAGEKDN-GRIISNVVMMGMGEPLANFDNVVTALRLMLDDHAYG 200 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S+RR+T+STSG VP I R+ +E V LA+SLHA ++ LR+ LVPIN+KYPL L+ AC+ Sbjct: 201 LSRRRVTVSTSGIVPAIDRLRDECPVALAVSLHASNDALRDRLVPINQKYPLRELMAACQ 260 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 Y + ITFEYVML G+ND A LI +++ +P K NLIPFNP+P + S+ Sbjct: 261 RYLERAPRDFITFEYVMLDGVNDQEAHARELIALVRDVPCKFNLIPFNPFPNSGFQRSNA 320 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + I F+ + +G + R RG D+ AACGQL Sbjct: 321 ERIRRFAGILLDAGIVTTTRKTRGDDVDAACGQL 354 >gi|254786618|ref|YP_003074047.1| 23S rRNA m2A2503 methyltransferase [Teredinibacter turnerae T7901] gi|237685384|gb|ACR12648.1| 23S rRNA m2A2503 methyltransferase [Teredinibacter turnerae T7901] Length = 399 Score = 292 bits (747), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 159/362 (43%), Positives = 226/362 (62%), Gaps = 18/362 (4%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+GM + LE +G + R +Q+ KW++ G+ DF M++IS+ +R L Sbjct: 19 KVNLLGMSQGRLEAFFESLG----EKKFRATQVLKWVHQLGVTDFAQMTNISKALRERLA 74 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + PE++++ S DGTRK+L+R +GG IETV+IP+ RGTLCVSSQVGCS Sbjct: 75 DIAEVRIPEVIEQWDSTDGTRKFLIR-----VGGGNAIETVFIPDGERGTLCVSSQVGCS 129 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q R+LT++EI+ QV +A G EG RK++N+V+M Sbjct: 130 LDCSFCATGKQGFNRDLTSDEIIGQVWIAAKSFGQLQ-----EGGARGD--RKVTNVVLM 182 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+NV +++ + SKRR+TLSTSG VP + R+G+ LAISLHA Sbjct: 183 GMGEPLLNFENVVEAMHLMMHDNCYGISKRRVTLSTSGVVPQLDRLGKYTDACLAISLHA 242 Query: 246 VSNDLRNILVPINRKYPL-EMLIDACRHYPGLSNA-RRITFEYVMLKGINDSPRDALNLI 303 +++LRN LVPIN+KYP+ ++L A R+ GL +A R+IT EY ++ +ND A L+ Sbjct: 243 PNDELRNQLVPINKKYPIAQLLASAKRYIEGLPDAHRKITIEYTLIDQVNDRIEHAHELV 302 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK +P KINLIPFNP+ Y + F + + +GY++ +RT RG DI AACG Sbjct: 303 ELLKDVPVKINLIPFNPFGLSNYKKVSNNALRRFQQILIDAGYTATVRTTRGDDIDAACG 362 Query: 364 QL 365 QL Sbjct: 363 QL 364 >gi|227328680|ref|ZP_03832704.1| hypothetical protein PcarcW_15616 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 418 Score = 292 bits (747), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 162/363 (44%), Positives = 216/363 (59%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+++ + + +G R Q+ KWIY DF M+DI++ R L Sbjct: 50 EKINLLDLNRQQMRDLFMSMG----EKPFRADQVMKWIYHYCCDDFNQMTDINKVFRSKL 105 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PE+VDE+ S DGT KW + +GG +ETVYIPE+ R TLCVSSQVGC Sbjct: 106 QEIAEIRAPEVVDEQRSSDGTIKWAI-----LVGGQ-RVETVYIPEEDRATLCVSSQVGC 159 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNL EI+ QV A ++G F + G R I+N+VM Sbjct: 160 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFK----VTGQ------RPITNVVM 209 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 210 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 269 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++D+RN ++PIN+KY +E + A R Y SNA R+T EYVML IND A L Sbjct: 270 APTDDIRNEIMPINKKYNIETFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQL 329 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AAC Sbjct: 330 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 389 Query: 363 GQL 365 GQL Sbjct: 390 GQL 392 >gi|238752478|ref|ZP_04613954.1| Ribosomal RNA large subunit methyltransferase N [Yersinia rohdei ATCC 43380] gi|238709327|gb|EEQ01569.1| Ribosomal RNA large subunit methyltransferase N [Yersinia rohdei ATCC 43380] Length = 398 Score = 292 bits (747), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 161/363 (44%), Positives = 216/363 (59%), Gaps = 24/363 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E K+G R Q+ KW+Y DF+ M+DI++ +R L Sbjct: 31 KINLLDLNRQQMREFFAKMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKGLRAKLQ 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+ +E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC+ Sbjct: 87 RVAEIRAPEVAEEQRSTDGTIKWAIKV------GDQQVETVYIPEGERATLCVSSQVGCA 140 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIVM 184 L C FC T Q RNL EI+ QV A ++G + S G R I+N+VM Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG-----------ALKSTGTRPITNVVM 189 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 190 MGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 249 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPRDALNL 302 A ++D+R+ +VPINRKY +E + A R Y S N R+T EYVML INDS A L Sbjct: 250 APTDDIRDEIVPINRKYNIETFLAAVRRYLAKSKANGGRVTVEYVMLDHINDSTEQAHQL 309 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AAC Sbjct: 310 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 369 Query: 363 GQL 365 GQL Sbjct: 370 GQL 372 >gi|74316609|ref|YP_314349.1| hypothetical protein Tbd_0591 [Thiobacillus denitrificans ATCC 25259] gi|123773051|sp|Q3SL73|RLMN_THIDA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|74056104|gb|AAZ96544.1| Conserved hypothetical protein [Thiobacillus denitrificans ATCC 25259] Length = 372 Score = 291 bits (746), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 155/335 (46%), Positives = 202/335 (60%), Gaps = 9/335 (2%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q++ WI+ G+ DF M+DI++ +R L + P I +S DGTRKWL Sbjct: 25 FRARQVFHWIHQAGVTDFAQMTDIAKSLREKLQNEAVVQAPAINFAHLSADGTRKWLFD- 83 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G IETV+IPE RGTLCVSSQVGC+L C+FC TG Q RNLT EI+ Q+ Sbjct: 84 ----VGVGNGIETVFIPEDDRGTLCVSSQVGCALECTFCSTGRQGFNRNLTVAEIVGQLW 139 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 +A+ L P + R ++N+VMMGMGEPL NF+NV +L + D Sbjct: 140 VAQHSLKREPNRTASDHGAGEIAERPVTNVVMMGMGEPLANFENVVTALGVMLDDHAYGL 199 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+T+STSG VP + R+ E V LA+SLHA ++ LR+ +VPINRKYPL L+ ACR Sbjct: 200 SRRRVTVSTSGLVPAMDRLAERCPVALAVSLHAPNDALRDQIVPINRKYPLAELMAACRR 259 Query: 273 YPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 Y L +A R ITFEYVML G+ND P A LI + + +P K NLIPFNP+P Y Sbjct: 260 Y--LVHAPRDFITFEYVMLAGVNDQPEHARQLIALTRDVPCKFNLIPFNPFPDSGYEKPR 317 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + + F E ++ +GY R RG DI AACGQL Sbjct: 318 AEAMRVFREILQDAGYVVTTRKTRGDDIDAACGQL 352 >gi|238788173|ref|ZP_04631968.1| Ribosomal RNA large subunit methyltransferase N [Yersinia frederiksenii ATCC 33641] gi|238723760|gb|EEQ15405.1| Ribosomal RNA large subunit methyltransferase N [Yersinia frederiksenii ATCC 33641] Length = 398 Score = 291 bits (746), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 161/363 (44%), Positives = 217/363 (59%), Gaps = 24/363 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E ++G R Q+ KW+Y DF+ M+DI++ +R L Sbjct: 31 KINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKGLRAKLQ 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+ +E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC+ Sbjct: 87 RVAEIRAPEVAEEQRSIDGTIKWAIKV------GDQQVETVYIPEGDRATLCVSSQVGCA 140 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIVM 184 L C FC T Q RNL EI+ QV A ++G + S G R I+N+VM Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGS-----------LKSTGTRPITNVVM 189 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 190 MGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 249 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++D+R+ +VPINRKY +E + A R Y SNA R+T EYVML INDS A L Sbjct: 250 APTDDIRDEIVPINRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQL 309 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AAC Sbjct: 310 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 369 Query: 363 GQL 365 GQL Sbjct: 370 GQL 372 >gi|88799903|ref|ZP_01115475.1| radical SAM enzyme, Cfr family protein [Reinekea sp. MED297] gi|88777334|gb|EAR08537.1| radical SAM enzyme, Cfr family protein [Reinekea sp. MED297] Length = 386 Score = 291 bits (746), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 152/336 (45%), Positives = 208/336 (61%), Gaps = 18/336 (5%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R R +Q+ KWI+ RG+ DF M+D+S+ +R L I PE+ +K S DGTRKW+++ Sbjct: 30 RFRATQVLKWIHQRGVDDFDDMTDVSKSLREKLKAVAVIDAPEVTFKKFSKDGTRKWVMK 89 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 P G +ETVYIPE RGTLCVSSQ+GC+L CSFC TG Q R+L+A EI+ Q+ Sbjct: 90 MP-----GGSAVETVYIPEDDRGTLCVSSQIGCALDCSFCSTGKQGFNRDLSAAEIIGQL 144 Query: 152 -LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210 + ARS D PG R ++N+VMMGMGEPL N+DNV +++++ + Sbjct: 145 WVAARSW--DEPG---------KKRERHVTNVVMMGMGEPLLNYDNVVEAMNLMMEDNAY 193 Query: 211 SFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 SKRR+TLSTSG VP I + EE V +A+SLHA ++ LRN LVP+N++Y L+ +DA Sbjct: 194 GLSKRRVTLSTSGVVPRILDLAEETDVSMALSLHAPNDALRNELVPLNKRYGLKQTLDAV 253 Query: 271 RHY-PGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 Y L + R T EY ++ +ND P A L+ +L+ P KINLIPFNP+P Y Sbjct: 254 NTYFARLPDKRVPTIEYTLINEVNDKPEHAHELVDLLRETPCKINLIPFNPFPNSGYERP 313 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F + + ++GY+ +R RG DI AACGQL Sbjct: 314 SNNRIHRFKDILHQAGYNVTVRKTRGDDIDAACGQL 349 >gi|317049139|ref|YP_004116787.1| radical SAM enzyme, Cfr family [Pantoea sp. At-9b] gi|316950756|gb|ADU70231.1| radical SAM enzyme, Cfr family [Pantoea sp. At-9b] Length = 389 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 163/379 (43%), Positives = 225/379 (59%), Gaps = 23/379 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+++ E + +G R Q+ KW+Y DF+ M+DI++ +R L Sbjct: 21 EKINLLDLNRQQMREFFVSLG----EKPFRADQVMKWMYHYCCDDFEQMTDINKVLRGKL 76 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q I PE+ +EK S DGT KW +R G +ETVYIPE R TLCVSSQVGC Sbjct: 77 MQLTEIRAPEVAEEKRSSDGTIKWAIRV------GDQLVETVYIPEDDRATLCVSSQVGC 130 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNL EI+ QV A ++G + G R I+N+VM Sbjct: 131 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----AAKVTGQ------RPITNVVM 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 181 MGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 240 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++ LR+ +VPIN+KY +E + A + Y SNA R+T EYV+L +NDS DA L Sbjct: 241 APNDKLRDDIVPINKKYNIETFLAAVKRYLAKSNANQGRVTIEYVLLDHVNDSTDDAHQL 300 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P+KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AAC Sbjct: 301 AELLKDTPSKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 360 Query: 363 GQLK-SLSKRIPKVPRQEM 380 GQL + R + R++M Sbjct: 361 GQLAGDVIDRTKRTMRKKM 379 >gi|50122145|ref|YP_051312.1| ribosomal RNA large subunit methyltransferase N [Pectobacterium atrosepticum SCRI1043] gi|81644326|sp|Q6D273|RLMN_ERWCT RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|49612671|emb|CAG76121.1| conserved hypothetical protein [Pectobacterium atrosepticum SCRI1043] Length = 398 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 162/362 (44%), Positives = 216/362 (59%), Gaps = 22/362 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ + + +G R Q+ KW+Y DF M+DI++ R L Sbjct: 31 KINLLDLNRQQMRDLFMSMG----EKPFRADQVMKWMYHYCCDDFNQMTDINKVFRTKLQ 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+VDE+ S DGT KW + +GG +ETVYIPE+ R TLCVSSQVGC+ Sbjct: 87 EIAEIRAPEVVDEQRSSDGTIKWAI-----LVGGQ-RVETVYIPEEERATLCVSSQVGCA 140 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G F + G R I+N+VMM Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFK----VTGQ------RPITNVVMM 190 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 191 GMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++D+RN ++PIN+KY +EM + A R Y SNA R+T EYVML IND A L Sbjct: 251 PTDDIRNEIMPINKKYNIEMFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQLA 310 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AACG Sbjct: 311 ECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 370 Query: 364 QL 365 QL Sbjct: 371 QL 372 >gi|290476003|ref|YP_003468899.1| putative pyruvate formate lyase activating enzyme 2 [Xenorhabdus bovienii SS-2004] gi|289175332|emb|CBJ82135.1| putative pyruvate formate lyase activating enzyme 2 [Xenorhabdus bovienii SS-2004] Length = 392 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 164/385 (42%), Positives = 225/385 (58%), Gaps = 33/385 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ + + +G R Q+ KW+Y DF+ M+DI++ +R L Sbjct: 25 KINLLDLNRKQMRQFFIDMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKVLRMKLQ 80 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 Q I PE+ +E+ S DGT KW + G ++ETVYIPE R TLCVSSQVGC+ Sbjct: 81 QVAEIKAPEVAEEQRSADGTIKWAITV------GDQQVETVYIPEDERATLCVSSQVGCA 134 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVM 184 L C FC T Q RNL EI+ QV A ++G + S GR+ I+N+VM Sbjct: 135 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGS-----------LKSSGRRPITNVVM 183 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ + V LAISLH Sbjct: 184 MGMGEPLLNLNNVVPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMVDVALAISLH 243 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++D+R+ +VPINRKY +E + R Y SNA R+T EYVML +NDS A L Sbjct: 244 APTDDVRDEIVPINRKYNIEEFLAGVRRYLAKSNANQGRVTVEYVMLDHVNDSVEQAHQL 303 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + LK P+KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AAC Sbjct: 304 AECLKDTPSKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAAC 363 Query: 363 GQL---------KSLSKRIPKVPRQ 378 GQL ++L KR+ P Q Sbjct: 364 GQLAGDVIDRTKRTLKKRLAGEPIQ 388 >gi|291613878|ref|YP_003524035.1| radical SAM enzyme, Cfr family [Sideroxydans lithotrophicus ES-1] gi|291583990|gb|ADE11648.1| radical SAM enzyme, Cfr family [Sideroxydans lithotrophicus ES-1] Length = 359 Score = 291 bits (745), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 154/351 (43%), Positives = 216/351 (61%), Gaps = 16/351 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WIY G DF MSD++ +R L I P+++ E+ + DGTRKWLL Sbjct: 24 FRARQVLRWIYKGGESDFDAMSDLAISLREKLKLIACIQSPKVMREETASDGTRKWLLD- 82 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE+ RGTLCVS+Q GC+L C+FC TG Q RNL+ EI+ QV Sbjct: 83 ----VGTGNAVETVFIPEEGRGTLCVSTQAGCALDCAFCSTGKQGFNRNLSTAEIIGQVW 138 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A LG +D +G ++N+V+MGMGEPL NFDN +L + D Sbjct: 139 WANRELG-----KDADG------NWPVTNVVLMGMGEPLLNFDNTVNALRLMLDDNAYGL 187 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+T+STSG VP + R+ +E V LAISLHA ++ LRN+LVPIN+KYPL+ L+ AC+ Sbjct: 188 SRRRVTVSTSGVVPAMDRLRDECPVALAISLHAPNDALRNVLVPINQKYPLQELMAACQR 247 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + +TFEYVML G+NDS + A LI++++ +P K NLIPFNP+P Y SD Sbjct: 248 YLEKAPRDFVTFEYVMLAGVNDSVQHARELIELVRDVPCKFNLIPFNPFPQAPYQRSDMP 307 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQIT 383 ++ F + + ++G + IR RG DI AACGQL + K + M+++ Sbjct: 308 TVLRFRDVLMQAGIVTTIRKVRGDDIAAACGQLAGQVQDKTKRTHRLMEVS 358 >gi|261345336|ref|ZP_05972980.1| radical SAM enzyme, Cfr family [Providencia rustigianii DSM 4541] gi|282566377|gb|EFB71912.1| radical SAM enzyme, Cfr family [Providencia rustigianii DSM 4541] Length = 393 Score = 291 bits (745), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 165/386 (42%), Positives = 226/386 (58%), Gaps = 33/386 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+++ E ++G R Q+ KWIY DF M+DI++ +R L Sbjct: 25 QKINLLDLNRKQMREFFAELG----EKPFRADQVMKWIYHYCYDDFDQMTDINKVLRTKL 80 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PE+ DE+ S DGT KW ++ G +ETVYIPE R TLCVSSQVGC Sbjct: 81 KEVAEIRAPEVADEQRSSDGTIKWAIKV------GDQLVETVYIPEADRATLCVSSQVGC 134 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK-ISNIV 183 +L C FC T Q RNL EI+ QV A ++G + S GR+ I+N+V Sbjct: 135 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGS-----------LKSTGRRPITNVV 183 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N +NV ++ I D G SKRR+T+STSG VP + ++G+ I V LAISL Sbjct: 184 MMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTISTSGVVPALDKLGDMIDVALAISL 243 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALN 301 HA ++D+R+ +VPIN+KY +E +++ Y SNA R+T EYVML INDS A Sbjct: 244 HAPTDDVRDEIVPINKKYNIETFLNSVNRYLTKSNANAGRVTVEYVMLDHINDSVEQAHQ 303 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L + LK P+KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AA Sbjct: 304 LAECLKNTPSKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAA 363 Query: 362 CGQL---------KSLSKRIPKVPRQ 378 CGQL ++L KR+ P Q Sbjct: 364 CGQLAGDVIDRTKRTLKKRLAGEPIQ 389 >gi|93005478|ref|YP_579915.1| hypothetical protein Pcryo_0648 [Psychrobacter cryohalolentis K5] gi|123264706|sp|Q1QD22|RLMN_PSYCK RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|92393156|gb|ABE74431.1| conserved hypothetical protein [Psychrobacter cryohalolentis K5] Length = 413 Score = 291 bits (744), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 160/370 (43%), Positives = 225/370 (60%), Gaps = 22/370 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+GM + +L + IG R++Q+ KWIY +G+ DF+ M+++S+ +R L+ Sbjct: 32 KTNLLGMTQAQLADYFKSIG----EKPFRSTQVIKWIYQQGVTDFEQMTNLSKSLRDKLS 87 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVSS 120 + +I P+++ + S DGTRKW+ GG + +ETV IP R TLCVSS Sbjct: 88 ANACVIPPKVIHRQYSDDGTRKWVFE----VTGGSL-VETVLIPADDSKLNGRKTLCVSS 142 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARS--LLGDFPGCEDIEGMVIPSVGRK 178 QVGC+L CSFC TG Q R+LTA EIL Q+ +A + + + E+++ + + Sbjct: 143 QVGCALDCSFCSTGKQGFERDLTAAEILGQLWVANASYMTDENDSLENVDHSLWEN---N 199 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238 ++N+VMMGMGEPL N+ V S+ + SKRR+TLSTSG VP + + +E+ V Sbjct: 200 VTNVVMMGMGEPLLNYRPVVSSMELMLSDHAYGLSKRRVTLSTSGVVPKMYELAQELDVA 259 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR---RITFEYVMLKGINDS 295 LAISLHA +++LRN LVPIN+KYPLE L+ A R+Y N R +T EYVML G+NDS Sbjct: 260 LAISLHAPNDELRNELVPINKKYPLEQLMAAARNYVFDVNPRHKKHVTIEYVMLDGVNDS 319 Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 A L+ +L +P+KINLIPFNP+P Y S I FS + +G+ IR RG Sbjct: 320 NEHAEQLVALLGNLPSKINLIPFNPFPHANYDKSSNNRIHAFSNILSEAGFVCTIRQTRG 379 Query: 356 LDILAACGQL 365 DI AACGQL Sbjct: 380 DDIDAACGQL 389 >gi|257465082|ref|ZP_05629453.1| hypothetical protein AM202_01135 [Actinobacillus minor 202] gi|257450742|gb|EEV24785.1| hypothetical protein AM202_01135 [Actinobacillus minor 202] Length = 386 Score = 291 bits (744), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 163/363 (44%), Positives = 217/363 (59%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ M R ++ E L +G R Q+ KWIY G +F MS+I++ +R L Sbjct: 18 EKVNLMNMTRPQMREFLASLG----EKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKL 73 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q I PE+ E+ S DGT KW ++ G +IETVYIPE R TLCVSSQVGC Sbjct: 74 KQVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQIETVYIPEADRATLCVSSQVGC 127 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNL EI+ QV A ++G+F + G+ R I+N+VM Sbjct: 128 ALACTFCSTAQQGFNRNLNVAEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 177 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D SKRR+TLSTSG VP + + E+I V LAISLH Sbjct: 178 MGMGEPLLNVNNVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDGLREKIDVALAISLH 237 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++++R+ +VPIN+KY +EMLI++ Y +SNA ++T EYVML IND A L Sbjct: 238 APNDEIRDEIVPINKKYNIEMLINSVNKYLEVSNANHGKVTIEYVMLDHINDEVDHAHQL 297 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K+LK P KINLIP+NP+P Y S I F + + G++ IR RG DI AAC Sbjct: 298 AKVLKNTPCKINLIPWNPFPEAPYAKSSNSRIDRFQKALMEYGFTVTIRKTRGDDIDAAC 357 Query: 363 GQL 365 GQL Sbjct: 358 GQL 360 >gi|152995382|ref|YP_001340217.1| radical SAM protein [Marinomonas sp. MWYL1] gi|205829788|sp|A6VV03|RLMN_MARMS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|150836306|gb|ABR70282.1| radical SAM enzyme, Cfr family [Marinomonas sp. MWYL1] Length = 371 Score = 291 bits (744), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 163/367 (44%), Positives = 220/367 (59%), Gaps = 20/367 (5%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +KK +L+G+ E+L E IG + R +Q+ KWI+ +G F+ M+D+S+ + Sbjct: 1 MTDIKKVNLLGLSPEKLIEFFESIG----EKKFRATQVIKWIHQKGAESFEEMTDVSKAL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVE-IETVYIPEKSRGTLCVS 119 R L Q I PE+V + IS DGTRKW++R GG + +ETV IP+ R TLCVS Sbjct: 57 RAKLEQICEIRGPEVVSQNISTDGTRKWIIRTE----GGKNDCVETVLIPDGDRATLCVS 112 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 SQVGCSL CSFC TG Q RNLT EI+ QV +A G P+ R++ Sbjct: 113 SQVGCSLDCSFCSTGKQGFNRNLTPAEIIGQVWIAIKSFGPMD----------PNGPRRV 162 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 +N+VMMGMGEPL NF+ V ++ + SKRR+TLSTSG VP I + + V L Sbjct: 163 TNVVMMGMGEPLMNFEPVVDAMILMMHDHAYGLSKRRVTLSTSGVVPKIYELVKRTDVSL 222 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRD 298 AISLHA ++ LRN LVPIN+KYP+ L++AC+ Y L + R IT EY ++ G+ND+ Sbjct: 223 AISLHAPNDALRNELVPINKKYPIAELLEACQFYLENLPDKRHITIEYTLMSGVNDNEEQ 282 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L ++LK + KINLIPFNP+P Y F + + +GY+ +RT RG DI Sbjct: 283 AHELAELLKVLECKINLIPFNPFPHSGYEKPSNNRTRRFQKILADAGYTVTVRTTRGDDI 342 Query: 359 LAACGQL 365 AACGQL Sbjct: 343 DAACGQL 349 >gi|77362060|ref|YP_341634.1| ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas haloplanktis TAC125] gi|123757670|sp|Q3ID16|RLMN_PSEHT RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|76876971|emb|CAI89188.1| putative pyruvate formate lyase activating enzyme 2; Fe-S cluster domain [Pseudoalteromonas haloplanktis TAC125] Length = 376 Score = 291 bits (744), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 167/383 (43%), Positives = 229/383 (59%), Gaps = 21/383 (5%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M KK +L+ + RE + E G R+ Q+ KWIY G+ +F MS++++++ Sbjct: 1 MTEQKKINLLDLNREGMRELFASFG----EKPFRSDQVMKWIYHFGVDNFDDMSNVNKKL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 + L I+ PEI + + DGT K+ L + G E+E V+IPEK R TLCVSS Sbjct: 57 KEKLKAECEIVAPEISVRQQAKDGTIKYAL-----VLEGGQEVEAVWIPEKERATLCVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC+L C+FC T Q RNL EI+ QV +G ++G S R ++ Sbjct: 112 QVGCALECTFCSTAQQGFNRNLKVSEIIGQVWRVAKDIG-------LDGH---SEKRPVT 161 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N NV ++ + D G SKRR+TLSTSG VP + + E+I V LA Sbjct: 162 NVVMMGMGEPLLNVKNVVPAMELMLDDWGFGLSKRRVTLSTSGVVPALDLLKEKIDVALA 221 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDA 299 ISLHA N LR+ILVP+N+KYP+E + ACR Y S A + +T EYVML GINDS A Sbjct: 222 ISLHAPDNALRDILVPVNKKYPIEEFLAACRRYIDGSKANKDVTVEYVMLNGINDSTDQA 281 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L++ LKG P K+NLIPFNP+PG EY S I FS+ ++ +G + +R PRG DI Sbjct: 282 HALVQTLKGTPCKVNLIPFNPFPGNEYTRSSNSRIDRFSKVLQAAGITCIVRRPRGDDID 341 Query: 360 AACGQLK-SLSKRIPKVPRQEMQ 381 AACGQL + R ++ +++M+ Sbjct: 342 AACGQLAGDVVDRTKRLAKKKMR 364 >gi|304398588|ref|ZP_07380460.1| radical SAM enzyme, Cfr family [Pantoea sp. aB] gi|304353799|gb|EFM18174.1| radical SAM enzyme, Cfr family [Pantoea sp. aB] Length = 389 Score = 291 bits (744), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 162/363 (44%), Positives = 217/363 (59%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+++ E L +G R Q+ KWIY DF+ M+DI++++R+ L Sbjct: 21 QKINLLDLNRQQMREFFLSLG----EKPFRADQVMKWIYHYCCDDFEQMTDINKKLRNRL 76 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PE+ +E S DGT KW +R G +ETVYIPE R TLCVSSQVGC Sbjct: 77 MELTEIRAPEVAEEMRSTDGTIKWAIRV------GDQLVETVYIPEGDRATLCVSSQVGC 130 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNL EI+ QV A ++G I G R I+N+VM Sbjct: 131 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKITGQ------RPITNVVM 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 181 MGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 240 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++ LR+ +VPIN+KY +E + A + Y SNA R+T EYV+L +NDS DA L Sbjct: 241 AANDKLRDDIVPINKKYNIETFLAAVKRYIAKSNANQGRVTIEYVLLDHVNDSTDDAHEL 300 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AAC Sbjct: 301 AALLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTTIVRKTRGDDIDAAC 360 Query: 363 GQL 365 GQL Sbjct: 361 GQL 363 >gi|78223881|ref|YP_385628.1| ribosomal RNA large subunit methyltransferase N [Geobacter metallireducens GS-15] gi|123742801|sp|Q39S71|RLMN_GEOMG RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|78195136|gb|ABB32903.1| 23S rRNA m(2)A-2503 methyltransferase [Geobacter metallireducens GS-15] Length = 346 Score = 291 bits (744), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 157/337 (46%), Positives = 211/337 (62%), Gaps = 29/337 (8%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH--FSIIYPEIVDEKISCDGTRKWL 89 R R QI+KW+Y + R F M+D+++++R L + S + PE ++ +S DGTRK+L Sbjct: 27 RYRARQIFKWLYQKDARSFAEMTDLAKDLRRDLEETAVISDLEPEAME--VSRDGTRKYL 84 Query: 90 LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149 R G VE +V IPE+ R TLC+SSQVGC++ C FC TGT +L RNLTA EI+ Sbjct: 85 FRLED---GNTVE--SVLIPEEDRTTLCISSQVGCAMACEFCLTGTFRLTRNLTAGEIVN 139 Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209 Q+ R D P + NIV MGMGEPL N DNV K+L I G Sbjct: 140 QICAVRR---DVP----------------VRNIVFMGMGEPLANLDNVVKALKIILHDDG 180 Query: 210 LSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 L FS RR+T+STSG VP + R+G E+ V LA+SL+A ++++R+ ++P+NR+YPL +L+DA Sbjct: 181 LQFSTRRVTVSTSGLVPEMERLGREVTVNLAVSLNATTDEVRDRIMPVNRRYPLRLLLDA 240 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 CR YP L R+IT EYVM+KG+NDS DA L+K+L I +KINLIPFN GC + Sbjct: 241 CRSYP-LPGRRKITIEYVMIKGLNDSLEDAKRLVKLLSDISSKINLIPFNEHDGCSFKSP 299 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 DQ I F + ++ R+ RG DI AACGQLK Sbjct: 300 DQGAIDVFHSYLLSKHFTVITRSSRGSDISAACGQLK 336 >gi|37525329|ref|NP_928673.1| hypothetical protein plu1373 [Photorhabdus luminescens subsp. laumondii TTO1] gi|81419944|sp|Q7N709|RLMN_PHOLL RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|36784756|emb|CAE13666.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 392 Score = 291 bits (744), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 161/363 (44%), Positives = 217/363 (59%), Gaps = 24/363 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ + + +G R Q+ KWIY DF+ M+DI++ +R L Sbjct: 25 KINLLDLNRKQMRQFFIDMG----EKPFRADQVMKWIYHYCYDDFEQMTDINKILRAKLQ 80 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 Q I PE+ +E+ S DGT KW + G ++ETVYIPE R TLCVSSQVGC+ Sbjct: 81 QVAEIRAPEVAEEQRSADGTIKWAITV------GDQQVETVYIPEDDRATLCVSSQVGCA 134 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVM 184 L C FC T Q RNL EI+ QV A ++G + S GR+ I+N+VM Sbjct: 135 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGS-----------LKSSGRRPITNVVM 183 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 184 MGMGEPLLNLNNVVPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 243 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++D+R+ +VPINRKY +E + R Y SNA R+T EYVML INDS A L Sbjct: 244 APTDDVRDDIVPINRKYNIEQFLAGVRRYLTKSNANQGRVTVEYVMLDHINDSVEQAHQL 303 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + LK P+KINLIP+NP+PG Y S I F++ + G+++ +R RG DI AAC Sbjct: 304 AECLKETPSKINLIPWNPFPGAPYGRSSNSRIDRFAKVLMEYGFTTIVRKTRGDDIDAAC 363 Query: 363 GQL 365 GQL Sbjct: 364 GQL 366 >gi|284006771|emb|CBA72033.1| radical SAM superfamily protein [Arsenophonus nasoniae] Length = 389 Score = 291 bits (744), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 161/363 (44%), Positives = 217/363 (59%), Gaps = 24/363 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ M R+++ + G R Q+ KWIY DF M+DI++ +R+ L Sbjct: 22 KVNLLDMDRKQMRQFFSDTG----EKPFRADQVMKWIYHHCYDDFDLMTDINKVLRNKLK 77 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 Q I PEI E+ S DGT KW + G ++ETVYIPE R TLCVSSQVGC+ Sbjct: 78 QAAEIRAPEIAQEQRSTDGTIKWAITV------GEQQVETVYIPEDDRATLCVSSQVGCA 131 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVM 184 L C FC T Q RNL EI+ QV A ++G + S GR+ I+N+VM Sbjct: 132 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKVIGS-----------LKSSGRRPITNVVM 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 181 MGMGEPLLNLNNVIPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 240 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++++R+ +VPIN+KY +E + + R Y SNA R+T EYVML G+NDS A L Sbjct: 241 APTDEIRDEIVPINKKYNIETFLASVRRYLTKSNANQGRVTVEYVMLNGVNDSIEHAHQL 300 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + LK P+KINLIP+NP+PG Y S I F++ + + G+++ +R RG DI AAC Sbjct: 301 AECLKHTPSKINLIPWNPFPGAPYSRSSNSRIDRFAKVLMKYGFTTIVRKTRGDDIDAAC 360 Query: 363 GQL 365 GQL Sbjct: 361 GQL 363 >gi|238797961|ref|ZP_04641451.1| Ribosomal RNA large subunit methyltransferase N [Yersinia mollaretii ATCC 43969] gi|238718166|gb|EEQ09992.1| Ribosomal RNA large subunit methyltransferase N [Yersinia mollaretii ATCC 43969] Length = 398 Score = 291 bits (744), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 160/363 (44%), Positives = 216/363 (59%), Gaps = 24/363 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E K+G R Q+ KW+Y DF+ M+DI++ +R L Sbjct: 31 KINLLDLNRQQMREFFAKMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKVLRAKLQ 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+ +E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC+ Sbjct: 87 RVAEIRAPEVAEEQRSTDGTIKWAIKV------GDQQVETVYIPEADRATLCVSSQVGCA 140 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIVM 184 L C FC T Q RNL EI+ QV A ++G + S G R I+N+VM Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGS-----------LKSTGTRPITNVVM 189 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 190 MGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 249 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHY--PGLSNARRITFEYVMLKGINDSPRDALNL 302 A ++D+R+ +VPINRKY +E + A R Y +N R+T EYVML INDS A L Sbjct: 250 APTDDIRDEIVPINRKYNIETFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSTEQAHQL 309 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AAC Sbjct: 310 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMDYGFTTIVRKTRGDDIDAAC 369 Query: 363 GQL 365 GQL Sbjct: 370 GQL 372 >gi|240950291|ref|ZP_04754566.1| hypothetical protein AM305_03483 [Actinobacillus minor NM305] gi|240295193|gb|EER46001.1| hypothetical protein AM305_03483 [Actinobacillus minor NM305] Length = 386 Score = 291 bits (744), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 163/363 (44%), Positives = 217/363 (59%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ M R ++ E L +G R Q+ KWIY G +F MS+I++ +R L Sbjct: 18 EKVNLMNMTRPQMREFLASLG----EKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKL 73 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q I PE+ E+ S DGT KW ++ G +IETVYIPE R TLCVSSQVGC Sbjct: 74 KQVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQIETVYIPEADRATLCVSSQVGC 127 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNL EI+ QV A ++G+F + G+ R I+N+VM Sbjct: 128 ALACTFCSTAQQGFNRNLNVAEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 177 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D SKRR+TLSTSG VP + + E+I V LAISLH Sbjct: 178 MGMGEPLLNVNNVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDGLREKIDVALAISLH 237 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++++R+ +VPIN+KY ++MLID+ Y +SNA ++T EYVML IND A L Sbjct: 238 APNDEIRDEIVPINKKYNIKMLIDSVNKYLEVSNANHGKVTIEYVMLDHINDEVDHAHQL 297 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K+LK P KINLIP+NP+P Y S I F + + G++ IR RG DI AAC Sbjct: 298 AKVLKNTPCKINLIPWNPFPEAPYAKSSNSRIDRFQKALMEYGFTVTIRKTRGDDIDAAC 357 Query: 363 GQL 365 GQL Sbjct: 358 GQL 360 >gi|313201450|ref|YP_004040108.1| radical sam enzyme, cfr family [Methylovorus sp. MP688] gi|312440766|gb|ADQ84872.1| radical SAM enzyme, Cfr family [Methylovorus sp. MP688] Length = 367 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 153/333 (45%), Positives = 205/333 (61%), Gaps = 16/333 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +W++ G+ DF M+DI++ +R L I P I E+IS DGTRKWL+ Sbjct: 25 FRAKQLMRWMHHFGVHDFDQMTDIAKSLRDKLKDQAEITPPGIKLEQISEDGTRKWLID- 83 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G +ETV+IPE RGTLCVSSQVGC+L C+FC TG Q RNL+ EI+ Q+ Sbjct: 84 ----AGTGNGVETVFIPEAERGTLCVSSQVGCALECTFCSTGRQGFNRNLSVSEIIGQLW 139 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 +A LG P + R ISN+VMMGMGEPL NFDNV +L+I D Sbjct: 140 VANKALGRDPKGD-----------RIISNVVMMGMGEPLANFDNVVTALNIMLDDSAYGL 188 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+T+STSG VP + R+ E V LA+SLHA ++ LR+++VPIN+KYP++ L+ AC+ Sbjct: 189 SRRRVTVSTSGMVPAMDRLREACPVALAVSLHAPNDALRDVIVPINKKYPIKELMAACQR 248 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + +TFEYVML G+NDS A L+ I++ +P K NLIPFNP+P Y S + Sbjct: 249 YLEKAPRDFVTFEYVMLDGVNDSVEHARQLLDIVRDVPCKFNLIPFNPFPNSGYDTSKPE 308 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F + + ++ Y R RG DI AACGQL Sbjct: 309 AIRRFRDVLMQADYVVTTRKTRGDDIDAACGQL 341 >gi|318606744|emb|CBY28242.1| ribosomal RNA large subunit methyltransferase N [Yersinia enterocolitica subsp. palearctica Y11] Length = 397 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 160/363 (44%), Positives = 216/363 (59%), Gaps = 24/363 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E ++G R Q+ KW+Y DF+ M+DI++ +R L Sbjct: 30 KINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCFDDFEQMTDINKVLRAKLQ 85 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+ +E+ S DG KW ++ G ++ETVYIPE R TLCVSSQVGC+ Sbjct: 86 RVAEIRAPEVAEEQRSTDGAIKWAIKV------GDQQVETVYIPEGDRATLCVSSQVGCA 139 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIVM 184 L C FC T Q RNL EI+ QV A ++G + S G R I+N+VM Sbjct: 140 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGS-----------LKSTGTRPITNVVM 188 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 189 MGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 248 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++D+R+ +VPINRKY +E + A R Y SNA R+T EYVML INDS A L Sbjct: 249 APTDDIRDEIVPINRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQL 308 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AAC Sbjct: 309 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 368 Query: 363 GQL 365 GQL Sbjct: 369 GQL 371 >gi|291618414|ref|YP_003521156.1| YfgB [Pantoea ananatis LMG 20103] gi|291153444|gb|ADD78028.1| YfgB [Pantoea ananatis LMG 20103] gi|327394806|dbj|BAK12228.1| radical SAM Cfr family YfgB [Pantoea ananatis AJ13355] Length = 389 Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 164/379 (43%), Positives = 225/379 (59%), Gaps = 23/379 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+++ E + +G R Q+ KWIY DF+ M+DI++++R+ L Sbjct: 21 QKINLLDLNRQQMREFFVSLG----EKPFRADQVMKWIYHYCCDDFEQMTDINKKLRNRL 76 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PE+ +E S DGT KW +R G +ETVYIPE R TLCVSSQVGC Sbjct: 77 MELTEIRAPEVAEEMRSTDGTIKWAIRV------GDQLVETVYIPEGDRATLCVSSQVGC 130 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNL EI+ QV A ++G + G R I+N+VM Sbjct: 131 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITNVVM 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 181 MGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 240 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++ LR+ +VPIN+KY +E + A + Y G SNA R+T EYV+L +NDS DA L Sbjct: 241 APNDKLRDDIVPINKKYNIETFLAAVKRYIGKSNANQGRVTIEYVLLDHVNDSTDDAHEL 300 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AAC Sbjct: 301 AALLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTTIVRKTRGDDIDAAC 360 Query: 363 GQLK-SLSKRIPKVPRQEM 380 GQL + R + R++M Sbjct: 361 GQLAGEVIDRTKRTLRKKM 379 >gi|119471078|ref|ZP_01613637.1| predicted enzyme [Alteromonadales bacterium TW-7] gi|119445918|gb|EAW27199.1| predicted enzyme [Alteromonadales bacterium TW-7] Length = 377 Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 165/379 (43%), Positives = 228/379 (60%), Gaps = 21/379 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+ + E + G R Q+ KWIY G+ +F MS+++++++ L Sbjct: 6 KKINLLDLNRDAMRELFVSFG----EKPFRGDQVMKWIYHFGVDNFDEMSNVNKKLKEKL 61 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I+ PEI + + DGT K+ L + G E+E V+IPEK R TLCVSSQVGC Sbjct: 62 KAECEIVAPEISVRQQASDGTIKYAL-----VLEGGQEVEAVWIPEKERATLCVSSQVGC 116 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNL EI+ QV +G ++G S R ++N+VM Sbjct: 117 ALECTFCSTAQQGFNRNLKVSEIIGQVWRVAKDIG-------LDG---NSEKRPVTNVVM 166 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ + D G SKRR+TLSTSG VP + + E+I V LAISLH Sbjct: 167 MGMGEPLLNVKNVVPAMELMMDDWGFGLSKRRVTLSTSGVVPALDLLKEKIDVALAISLH 226 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALNLI 303 A N LR+ILVPIN+KYP+E + ACR Y S A + +T EYVML G+NDS A L+ Sbjct: 227 APDNALRDILVPINKKYPIEEFLAACRRYIDGSKANKDVTIEYVMLNGVNDSTDQAHELV 286 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K LKG P+K+NLIPFNP+PG EY S I FS+ ++ +G + +R RG DI AACG Sbjct: 287 KTLKGTPSKVNLIPFNPFPGNEYTRSSNSRIDRFSKVLQAAGITCIVRRTRGDDIDAACG 346 Query: 364 QLK-SLSKRIPKVPRQEMQ 381 QL + R ++ +++M+ Sbjct: 347 QLAGDVVDRTKRMAKKKMR 365 >gi|325981894|ref|YP_004294296.1| ribosomal RNA large subunit methyltransferase N [Nitrosomonas sp. AL212] gi|325531413|gb|ADZ26134.1| Ribosomal RNA large subunit methyltransferase N [Nitrosomonas sp. AL212] Length = 366 Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 157/353 (44%), Positives = 215/353 (60%), Gaps = 15/353 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ GI DF MSD+++ +R L I P I+ + ++ DGTRKWLL Sbjct: 25 FRARQLLRWIHQFGIADFDLMSDLAKGLREKLATQAVIELPTIMSDYVAADGTRKWLLS- 83 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G IETV+IPE SRGTLC+SSQVGC+L C+FC TG Q RNLT EI+ Q+ Sbjct: 84 ----VGAGNGIETVFIPEISRGTLCISSQVGCALACTFCSTGKQGFNRNLTVAEIIGQLW 139 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 +A +L C D + R ++N+VMMGMGEPL NF+NV +L + D Sbjct: 140 IANKML---ETCGDDTKL---QTKRAVTNVVMMGMGEPLANFENVVTALDLMLDDHAYGL 193 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+T+STSG VP I R+ E V LA+SLHA ++ LR+ LVPIN+KYP++ L+ AC+ Sbjct: 194 SRRRVTVSTSGLVPAIDRLRERCPVALAVSLHAPNDTLRDQLVPINKKYPIKELLAACQR 253 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + ITFEYVML GINDS A L+K+++ IP K NLIPFN + Y S + Sbjct: 254 YLSAAPRDFITFEYVMLDGINDSVAHACELVKLVQDIPCKFNLIPFNSFSDSGYKRSSTE 313 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL----KSLSKRIPKVPRQEMQ 381 I F + + +G + +R RG DI AACGQL K + R+ ++ + +Q Sbjct: 314 AIRVFRDVLVHAGLITTVRKTRGDDIAAACGQLAGQVKDKTHRLTRLKIETIQ 366 >gi|15603872|ref|NP_246946.1| hypothetical protein PM2007 [Pasteurella multocida subsp. multocida str. Pm70] gi|81636369|sp|Q9CJJ8|RLMN_PASMU RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|12722449|gb|AAK04091.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 394 Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 158/363 (43%), Positives = 219/363 (60%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L Sbjct: 26 KKINLMNLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLRDKL 81 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC Sbjct: 82 KQVAEIKAPEVAVEQRSADGTIKWAMQV------GDQQVETVYIPEADRATLCVSSQVGC 135 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F + G+ R I+N+VM Sbjct: 136 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 185 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+TLSTSG VP + ++ E I V LAISLH Sbjct: 186 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKLSEMIDVALAISLH 245 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ +VPIN+KY ++ML+D+ Y +SNA ++T EYVML +ND A L Sbjct: 246 APNDELRDEIVPINKKYNIKMLMDSVNRYLSVSNANHGKVTIEYVMLDHVNDGVEHAHQL 305 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+P Y S I F + + G++ +R RG DI AAC Sbjct: 306 AQVLKNTPCKINLIPWNPFPEAPYAKSSNSRIDRFQKTLMEYGFTVIVRKTRGDDIDAAC 365 Query: 363 GQL 365 GQL Sbjct: 366 GQL 368 >gi|226954474|ref|ZP_03824938.1| radical SAM protein [Acinetobacter sp. ATCC 27244] gi|294651490|ref|ZP_06728803.1| Fe-S-cluster oxidoreductase [Acinetobacter haemolyticus ATCC 19194] gi|226834823|gb|EEH67206.1| radical SAM protein [Acinetobacter sp. ATCC 27244] gi|292822640|gb|EFF81530.1| Fe-S-cluster oxidoreductase [Acinetobacter haemolyticus ATCC 19194] Length = 413 Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 169/369 (45%), Positives = 226/369 (61%), Gaps = 25/369 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+GM R ELE+ +G + R Q+ KWI+ + DF M++IS ++R L Sbjct: 32 KVNLLGMSRAELEKFFEDLG----EKKFRAGQVMKWIHQYFVTDFAEMTNISGKLREKLE 87 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK----SRGTLCVSSQ 121 + I PE+V S DGTRKW+ R G +ETV IP + +R TLC+SSQ Sbjct: 88 KICEIKAPEVVHRNYSKDGTRKWVFRVGD---GEGSLVETVLIPAEDKTGARKTLCISSQ 144 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR-SLLGDFPGCEDIEGMVIPSVGRKIS 180 VGC+L CSFC TG Q R+LT EI+ Q+ +A S + + P E R ++ Sbjct: 145 VGCALDCSFCSTGKQGFQRDLTPAEIIGQLWMANYSYMEEVPVAER---------ERTVT 195 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+D V S+ + D SKRR+TLSTSG VP I ++ ++I V LA Sbjct: 196 NVVMMGMGEPLLNYDAVLSSMQLMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDIDVALA 255 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHY---PGLSNARR-ITFEYVMLKGINDSP 296 ISLHA +++LRN LVPIN+KYPL+ LI AC+ Y G +ARR +T EYVML G+ND P Sbjct: 256 ISLHAPNDELRNELVPINKKYPLQQLIAACQRYLAKDGNESARRHVTIEYVMLDGVNDQP 315 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 A L+K+LK +P+KINLIPFNP+P Y S + I+ F + + +G+ IR RG Sbjct: 316 EHAQQLLKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIIAFQKTLSDAGFVCTIRQTRGD 375 Query: 357 DILAACGQL 365 DI AACGQL Sbjct: 376 DIDAACGQL 384 >gi|259907715|ref|YP_002648071.1| ribosomal RNA large subunit methyltransferase N [Erwinia pyrifoliae Ep1/96] gi|224963337|emb|CAX54822.1| conserved uncharacterized protein YfgB [Erwinia pyrifoliae Ep1/96] gi|283477569|emb|CAY73485.1| UPF0063 protein yfgB [Erwinia pyrifoliae DSM 12163] gi|310764777|gb|ADP09727.1| ribosomal RNA large subunit methyltransferase N [Erwinia sp. Ejp617] Length = 389 Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 162/363 (44%), Positives = 217/363 (59%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+++ E +G R Q+ KWIY DF M+DI++ R+ L Sbjct: 21 EKINLLDLNRQQMREFFASLG----EKPFRADQVMKWIYHYCCDDFDEMTDINKVFRNRL 76 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PE+ +E+ S DGT KW ++ +GG ++ETVYIPEK R TLCVSSQVGC Sbjct: 77 KELAEIRAPEVAEEQRSADGTIKWAIQ-----VGGQ-QVETVYIPEKDRATLCVSSQVGC 130 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNL EI+ QV A ++G + G R I+N+VM Sbjct: 131 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----AAKVTGQ------RPITNVVM 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 181 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 240 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++ +RN +VPIN+KY +E + + Y G SNA R+T EYVML INDS +A L Sbjct: 241 APNDSIRNEIVPINKKYNIETFLASVSRYIGKSNANQGRVTIEYVMLDHINDSTDNAHEL 300 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AAC Sbjct: 301 AALLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAAC 360 Query: 363 GQL 365 GQL Sbjct: 361 GQL 363 >gi|238758832|ref|ZP_04620005.1| Ribosomal RNA large subunit methyltransferase N [Yersinia aldovae ATCC 35236] gi|238702940|gb|EEP95484.1| Ribosomal RNA large subunit methyltransferase N [Yersinia aldovae ATCC 35236] Length = 398 Score = 290 bits (742), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 159/363 (43%), Positives = 215/363 (59%), Gaps = 24/363 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E ++G R Q+ KW+Y DF+ M+DI++ +R L Sbjct: 31 KINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCFDDFEQMTDINKGLRTKLQ 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+ +E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC+ Sbjct: 87 RVAEIRAPEVAEEQRSTDGTIKWAIKV------GDQQVETVYIPEGDRATLCVSSQVGCA 140 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIVM 184 L C FC T Q RNL EI+ QV A ++G + + G R I+N+VM Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG-----------AVKATGIRPITNVVM 189 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 190 MGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 249 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPRDALNL 302 A ++D+R+ +VPINRKY +E + A R Y S N R+T EYVML INDS A L Sbjct: 250 APTDDIRDDIVPINRKYNIETFLAAVRRYLAKSKANGGRVTVEYVMLDHINDSTEQAHQL 309 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AAC Sbjct: 310 AACLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 369 Query: 363 GQL 365 GQL Sbjct: 370 GQL 372 >gi|82703494|ref|YP_413060.1| hypothetical protein Nmul_A2379 [Nitrosospira multiformis ATCC 25196] gi|123768149|sp|Q2Y6F3|RLMN_NITMU RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|82411559|gb|ABB75668.1| 23S rRNA m(2)A-2503 methyltransferase [Nitrosospira multiformis ATCC 25196] Length = 365 Score = 290 bits (742), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 159/355 (44%), Positives = 213/355 (60%), Gaps = 17/355 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ G DF MSD+++ +R L I P+++ + + DGTRKWLL Sbjct: 25 FRARQLLRWIHRTGEADFDAMSDLAKGLREKLAAAAVIEPPKVISDHTASDGTRKWLL-- 82 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G IETVYIPE SRGTLC+SSQVGC+L C+FC TG Q RNLT EI+ Q+ Sbjct: 83 ---SVGAGNGIETVYIPETSRGTLCISSQVGCALACAFCSTGRQGFNRNLTVAEIIGQLW 139 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A L + E R I+NIVMMGMGEPL NF+NV SL + D Sbjct: 140 WANKALTETFTSE-------AGRERPITNIVMMGMGEPLTNFENVVTSLDLMLDDNAYGL 192 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+T+STSG +P + R+ E V LA+SLHA ++ LR+ LVPINRKYP+ L+ AC Sbjct: 193 SRRRVTVSTSGIIPAMDRLRERCPVALAVSLHAPNDALRDQLVPINRKYPIRELLGACER 252 Query: 273 YPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 Y L +A R ITFEYVML G+NDS A L+++++ IP K+NLIPFNP+P + S Sbjct: 253 Y--LQSAPRDFITFEYVMLDGVNDSVAQARELVQLVRDIPCKLNLIPFNPFPDSGFRRSS 310 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS-LSKRIPKVPRQEMQITG 384 + F + + +G + +R RG DI AACGQL + + +VPR + G Sbjct: 311 ANAVSRFRDVLMEAGLVTTVRKTRGDDIAAACGQLAGKVLDKTRRVPRNIAEAAG 365 >gi|153948736|ref|YP_001400164.1| ribosomal RNA large subunit methyltransferase N [Yersinia pseudotuberculosis IP 31758] gi|170023536|ref|YP_001720041.1| ribosomal RNA large subunit methyltransferase N [Yersinia pseudotuberculosis YPIII] gi|205829929|sp|A7FFY6|RLMN_YERP3 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829933|sp|B1JS02|RLMN_YERPY RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|152960231|gb|ABS47692.1| radical SAM domain protein, Cfr family [Yersinia pseudotuberculosis IP 31758] gi|169750070|gb|ACA67588.1| radical SAM enzyme, Cfr family [Yersinia pseudotuberculosis YPIII] Length = 398 Score = 290 bits (742), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 159/363 (43%), Positives = 216/363 (59%), Gaps = 24/363 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E ++G R Q+ KW+Y DF+ M+DI++ +R L Sbjct: 31 KINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKGLRAKLQ 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+ +E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC+ Sbjct: 87 RVAEIRAPEVAEEQRSVDGTIKWAIKV------GDQQVETVYIPEADRATLCVSSQVGCA 140 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIVM 184 L C FC T Q RNL EI+ QV A ++G + S G R I+N+VM Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGS-----------LKSTGTRPITNVVM 189 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 190 MGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 249 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHY--PGLSNARRITFEYVMLKGINDSPRDALNL 302 A ++D+R+ +VPINRKY +E + A R Y +N R+T EYVML INDS A L Sbjct: 250 APTDDIRDEIVPINRKYNIETFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSTEQAHQL 309 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AAC Sbjct: 310 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 369 Query: 363 GQL 365 GQL Sbjct: 370 GQL 372 >gi|300724166|ref|YP_003713483.1| putative pyruvate formate lyase activating enzyme 2 [Xenorhabdus nematophila ATCC 19061] gi|297630700|emb|CBJ91365.1| putative pyruvate formate lyase activating enzyme 2 [Xenorhabdus nematophila ATCC 19061] Length = 392 Score = 290 bits (742), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 164/383 (42%), Positives = 224/383 (58%), Gaps = 33/383 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ + + +G R Q+ KW+Y DF+ M+DI++ +R L Sbjct: 25 KINLLDLNRKQMRQFFIDMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKVLRAKLQ 80 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 Q I PE+ +E+ S DGT KW + G ++ETVYIPE R TLCVSSQVGC+ Sbjct: 81 QVAEIKAPEVAEEQRSSDGTIKWAITV------GDQQVETVYIPEDDRATLCVSSQVGCA 134 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVM 184 L C FC T Q RNL EI+ QV A ++G + S GR+ I+N+VM Sbjct: 135 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGS-----------LKSSGRRPITNVVM 183 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 184 MGMGEPLLNLNNVVPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 243 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++D+R+ +VPINRKY +E + R Y SNA R+T EYVML +NDS A L Sbjct: 244 APTDDIRDEIVPINRKYNIEEFLAGVRRYLTKSNANQGRVTVEYVMLDHVNDSVEQAHQL 303 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + LK P+KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AAC Sbjct: 304 AECLKDTPSKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAAC 363 Query: 363 GQL---------KSLSKRIPKVP 376 GQL ++L KR+ P Sbjct: 364 GQLAGDVIDRTKRTLKKRLTGEP 386 >gi|238785318|ref|ZP_04629307.1| Ribosomal RNA large subunit methyltransferase N [Yersinia bercovieri ATCC 43970] gi|238713771|gb|EEQ05794.1| Ribosomal RNA large subunit methyltransferase N [Yersinia bercovieri ATCC 43970] Length = 398 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 164/383 (42%), Positives = 221/383 (57%), Gaps = 33/383 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E ++G R Q+ KW+Y DF+ M+DI++ +R L Sbjct: 31 KINLLDLNRQQMREFFAQMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKALRAKLQ 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+ E+ S DGT KW + G ++ETVYIPE R TLCVSSQVGC+ Sbjct: 87 RVAEIRAPEVAQEQRSADGTIKWAITV------GDQQVETVYIPEADRATLCVSSQVGCA 140 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIVM 184 L C FC T Q RNL EI+ QV A ++G + S G R I+N+VM Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGS-----------LKSTGTRPITNVVM 189 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 190 MGMGEPLLNLNNVVPAMDIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 249 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHY--PGLSNARRITFEYVMLKGINDSPRDALNL 302 A ++D+RN +VPINRKY +E + A R Y +N R+T EYVML INDS A L Sbjct: 250 APTDDIRNEIVPINRKYNIETFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSVEQAHQL 309 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AAC Sbjct: 310 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 369 Query: 363 GQL---------KSLSKRIPKVP 376 GQL ++L KR+ P Sbjct: 370 GQLAGEVIDRTKRTLKKRMAGEP 392 >gi|315123120|ref|YP_004065126.1| hypothetical protein PSM_B0177 [Pseudoalteromonas sp. SM9913] gi|315016880|gb|ADT70217.1| hypothetical protein PSM_B0177 [Pseudoalteromonas sp. SM9913] Length = 376 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 166/383 (43%), Positives = 229/383 (59%), Gaps = 21/383 (5%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M KK +L+ + R+ + E + G R Q+ KWIY G+ +F MS++++++ Sbjct: 1 MTEQKKINLLDLNRDAMRELFVSFG----EKPFRGDQVMKWIYHFGVDNFDEMSNVNKKL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 + L I+ PEI + + DGT K+ L + G E+E V+IPEK R TLCVSS Sbjct: 57 KEKLKNECEIVAPEISVRQQASDGTIKYAL-----VLEGGQEVEAVWIPEKDRATLCVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC+L C+FC T Q RNL EI+ QV +G ++G S R ++ Sbjct: 112 QVGCALECTFCSTAQQGFNRNLKVSEIIGQVWRVAKDIG-------LDG---NSEKRPVT 161 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N NV ++ + D G SKRR+TLSTSG VP + + E+I V LA Sbjct: 162 NVVMMGMGEPLLNVKNVVPAMELMMDDWGFGLSKRRVTLSTSGVVPALDLLKEKIDVALA 221 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDA 299 ISLHA N LR+ILVPIN+KYP+E + ACR Y S A + +T EYVML G+NDS A Sbjct: 222 ISLHAPDNALRDILVPINKKYPIEEFLAACRRYIDGSKANKDVTIEYVMLNGVNDSTDQA 281 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L+K LKG P+K+NLIPFNP+PG EY S I FS+ ++ +G + +R RG DI Sbjct: 282 HELVKTLKGTPSKVNLIPFNPFPGNEYTRSSNSRIDRFSKVLQAAGITCIVRRTRGDDID 341 Query: 360 AACGQLK-SLSKRIPKVPRQEMQ 381 AACGQL + R ++ +++M+ Sbjct: 342 AACGQLAGDVVDRTKRMAKKKMR 364 >gi|22125249|ref|NP_668672.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis KIM 10] gi|45442520|ref|NP_994059.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis biovar Microtus str. 91001] gi|51597160|ref|YP_071351.1| ribosomal RNA large subunit methyltransferase N [Yersinia pseudotuberculosis IP 32953] gi|108808316|ref|YP_652232.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis Antiqua] gi|108811419|ref|YP_647186.1| hypothetical protein YPN_1256 [Yersinia pestis Nepal516] gi|145599499|ref|YP_001163575.1| hypothetical protein YPDSF_2227 [Yersinia pestis Pestoides F] gi|149365342|ref|ZP_01887377.1| hypothetical protein YPE_0496 [Yersinia pestis CA88-4125] gi|162419386|ref|YP_001605027.1| hypothetical protein YpAngola_A0421 [Yersinia pestis Angola] gi|165926002|ref|ZP_02221834.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar Orientalis str. F1991016] gi|165937119|ref|ZP_02225684.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar Orientalis str. IP275] gi|166008394|ref|ZP_02229292.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar Antiqua str. E1979001] gi|166212301|ref|ZP_02238336.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar Antiqua str. B42003004] gi|167399541|ref|ZP_02305065.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421243|ref|ZP_02312996.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423347|ref|ZP_02315100.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|218929942|ref|YP_002347817.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis CO92] gi|229838462|ref|ZP_04458621.1| predicted enzyme [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895163|ref|ZP_04510339.1| predicted enzyme [Yersinia pestis Pestoides A] gi|229899029|ref|ZP_04514173.1| predicted enzyme [Yersinia pestis biovar Orientalis str. India 195] gi|229901676|ref|ZP_04516798.1| predicted enzyme [Yersinia pestis Nepal516] gi|270489871|ref|ZP_06206945.1| radical SAM enzyme, Cfr family [Yersinia pestis KIM D27] gi|294504556|ref|YP_003568618.1| hypothetical protein YPZ3_2446 [Yersinia pestis Z176003] gi|81638860|sp|Q667Z6|RLMN_YERPS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123372276|sp|Q1C5I5|RLMN_YERPA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123373337|sp|Q1CK94|RLMN_YERPN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123776892|sp|Q7CJM9|RLMN_YERPE RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829931|sp|A9R805|RLMN_YERPG RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829932|sp|A4TMU0|RLMN_YERPP RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|21958119|gb|AAM84923.1|AE013737_5 hypothetical protein y1350 [Yersinia pestis KIM 10] gi|45437385|gb|AAS62936.1| Predicted Fe-S-cluster redox enzyme [Yersinia pestis biovar Microtus str. 91001] gi|51590442|emb|CAH22082.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP 32953] gi|108775067|gb|ABG17586.1| hypothetical protein YPN_1256 [Yersinia pestis Nepal516] gi|108780229|gb|ABG14287.1| hypothetical protein YPA_2322 [Yersinia pestis Antiqua] gi|115348553|emb|CAL21493.1| conserved hypothetical protein [Yersinia pestis CO92] gi|145211195|gb|ABP40602.1| hypothetical protein YPDSF_2227 [Yersinia pestis Pestoides F] gi|149291755|gb|EDM41829.1| hypothetical protein YPE_0496 [Yersinia pestis CA88-4125] gi|162352201|gb|ABX86149.1| radical SAM domain protein, Cfr family [Yersinia pestis Angola] gi|165914982|gb|EDR33594.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar Orientalis str. IP275] gi|165922206|gb|EDR39383.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar Orientalis str. F1991016] gi|165992776|gb|EDR45077.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar Antiqua str. E1979001] gi|166206232|gb|EDR50712.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar Antiqua str. B42003004] gi|166960732|gb|EDR56753.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167052045|gb|EDR63453.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057517|gb|EDR67263.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229681605|gb|EEO77699.1| predicted enzyme [Yersinia pestis Nepal516] gi|229687974|gb|EEO80046.1| predicted enzyme [Yersinia pestis biovar Orientalis str. India 195] gi|229694828|gb|EEO84875.1| predicted enzyme [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701925|gb|EEO89948.1| predicted enzyme [Yersinia pestis Pestoides A] gi|262362449|gb|ACY59170.1| hypothetical protein YPD4_2263 [Yersinia pestis D106004] gi|262366544|gb|ACY63101.1| hypothetical protein YPD8_2426 [Yersinia pestis D182038] gi|270338375|gb|EFA49152.1| radical SAM enzyme, Cfr family [Yersinia pestis KIM D27] gi|294355015|gb|ADE65356.1| hypothetical protein YPZ3_2446 [Yersinia pestis Z176003] gi|320016019|gb|ADV99590.1| putative enzyme [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 398 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 159/363 (43%), Positives = 216/363 (59%), Gaps = 24/363 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E ++G R Q+ KW+Y DF+ M+DI++ +R L Sbjct: 31 KINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKGLRAKLQ 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+ +E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC+ Sbjct: 87 RVAEIRAPEVAEEQRSVDGTIKWAIKV------GDQQVETVYIPEADRATLCVSSQVGCA 140 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIVM 184 L C FC T Q RNL EI+ QV A ++G + S G R I+N+VM Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGS-----------LKSTGTRPITNVVM 189 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 190 MGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 249 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHY--PGLSNARRITFEYVMLKGINDSPRDALNL 302 A ++D+R+ +VPINRKY +E + A R Y +N R+T EYVML INDS A L Sbjct: 250 APTDDIRDEIVPINRKYNIETFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSTEQAHQL 309 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AAC Sbjct: 310 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 369 Query: 363 GQL 365 GQL Sbjct: 370 GQL 372 >gi|261494121|ref|ZP_05990624.1| radical SAM enzyme, Cfr family [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496038|ref|ZP_05992448.1| radical SAM enzyme, Cfr family [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308288|gb|EEY09581.1| radical SAM enzyme, Cfr family [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310287|gb|EEY11487.1| radical SAM enzyme, Cfr family [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 415 Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 159/363 (43%), Positives = 221/363 (60%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+E+ E ++G R Q+ KWIY G +F MS+I++ +R L Sbjct: 47 EKINLLNLNRQEMRELFAEMG----EKPFRADQLMKWIYHFGEENFDNMSNINKVLREKL 102 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PE+ E+ S DGT KW ++ G +IETVYIPE R TLCVSSQVGC Sbjct: 103 KRIAEIKAPEVAVEQRSADGTIKWAMQV------GDQQIETVYIPEDDRATLCVSSQVGC 156 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNL+ EI+ QV A ++G+F + G+ R I+N+VM Sbjct: 157 ALACTFCSTAQQGFNRNLSVAEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 206 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D SKRR+TLSTSG VP + ++ E+I V LAISLH Sbjct: 207 MGMGEPLLNMNNVIPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKMREQIDVALAISLH 266 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ LVPIN+KY ++ML+D+ Y +SNA ++T EYVML +NDS A L Sbjct: 267 APNDELRDELVPINKKYNIKMLMDSVNKYLEVSNANHGKVTIEYVMLDHVNDSTDHAHQL 326 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+P Y S + F + + G++ +R RG DI AAC Sbjct: 327 AEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVTVRKTRGDDIDAAC 386 Query: 363 GQL 365 GQL Sbjct: 387 GQL 389 >gi|295676905|ref|YP_003605429.1| radical SAM enzyme, Cfr family [Burkholderia sp. CCGE1002] gi|295436748|gb|ADG15918.1| radical SAM enzyme, Cfr family [Burkholderia sp. CCGE1002] Length = 383 Score = 290 bits (741), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 150/341 (43%), Positives = 208/341 (60%), Gaps = 10/341 (2%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ DF GM+D+++ +R L +I P +V + IS DGTRKWL+ Sbjct: 29 FRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRATITMPGVVSDHISSDGTRKWLID- 87 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETVYIPE++RGTLCVSSQ GC++ C FC TG Q RNLT EI+ Q+ Sbjct: 88 ----VGNGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLTTGEIIGQLR 143 Query: 153 LARSLLGDFPGCEDIEGMVIPSVG---RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209 +A L G D G I G R ++N+VMMGMGEPL N+D V ++ + D Sbjct: 144 MAEFALRASRG--DAGGRAIGGDGKGERVVTNVVMMGMGEPLLNYDAVVPAMRLMLDDNA 201 Query: 210 LSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 S+RR+TLSTSG VP + R+G ++ V LA+SLHA ++ LR++LVP+N+KYPL L+ A Sbjct: 202 YGLSRRRVTLSTSGVVPMMDRLGADVPVALAVSLHASNDALRDVLVPLNKKYPLRELMAA 261 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 C Y ++ ITFEY ML G+NDS A L+ + + +P K NLIPFNP+P + S Sbjct: 262 CERYLKVAPRDFITFEYCMLDGVNDSEAHARELLAVTRDVPCKFNLIPFNPFPESGLIRS 321 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 + I F++ + +G + +R RG DI AACGQL K Sbjct: 322 KPEQIKRFAQVLIDAGVVTTVRKTRGDDIDAACGQLAGAVK 362 >gi|89095332|ref|ZP_01168250.1| hypothetical protein MED92_00580 [Oceanospirillum sp. MED92] gi|89080407|gb|EAR59661.1| hypothetical protein MED92_00580 [Oceanospirillum sp. MED92] Length = 371 Score = 290 bits (741), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 156/362 (43%), Positives = 221/362 (61%), Gaps = 20/362 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+G+ ++E +IG + R +Q+ KWI+ G F M++IS+ +R L Sbjct: 6 KKVNLLGLSPAKMEAFFDEIG----EKKFRATQVLKWIHQLGATSFDEMTNISKALRAKL 61 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PE++ EK S DGTRKW++R + +E V IP+ R TLCVSSQVGC Sbjct: 62 EEVAEIREPEVLLEKTSKDGTRKWVIRTDSGS-----SVEAVLIPDGERKTLCVSSQVGC 116 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 SL CSFC TG Q NLT EI+ Q+ +A G++ R +SN+V+ Sbjct: 117 SLDCSFCSTGKQGFNSNLTTAEIIGQLRIAIRSYGEYNTTSQ----------RVVSNVVL 166 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV ++++ + SKRR+TLST+G VP I ++ E V LAISLH Sbjct: 167 MGMGEPLMNFDNVVDAITLMMEDNAYCLSKRRVTLSTAGVVPAIDKLREVTDVSLAISLH 226 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLI 303 A ++DLR+ILVPIN++YP++ L+ AC Y L++ R IT EY ++ G+ND P A L+ Sbjct: 227 APNDDLRDILVPINKRYPIKELVAACNRYLDNLNDKRVITVEYTLINGVNDKPEHAKQLL 286 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 KIL+ +P+K+N+IPFNP+P Y ++ I+ F E I G + +R RG +I AACG Sbjct: 287 KILRRMPSKLNIIPFNPFPNSGYERPSEERILAFKEIIVHGGIVTTVRRTRGDEIDAACG 346 Query: 364 QL 365 QL Sbjct: 347 QL 348 >gi|212710618|ref|ZP_03318746.1| hypothetical protein PROVALCAL_01684 [Providencia alcalifaciens DSM 30120] gi|212686699|gb|EEB46227.1| hypothetical protein PROVALCAL_01684 [Providencia alcalifaciens DSM 30120] Length = 399 Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 165/386 (42%), Positives = 225/386 (58%), Gaps = 33/386 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+++ E ++G R Q+ KWIY DF M+DI++ +R L Sbjct: 31 QKINLLDLNRKQMREFFAELG----EKPFRADQVMKWIYHYCFDDFDQMTDINKVLRAKL 86 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PE+ DE+ S DGT KW ++ G +ETVYIPE R TLCVSSQVGC Sbjct: 87 KEVAEIRAPEVADEQRSSDGTIKWAIKV------GDQLVETVYIPEADRATLCVSSQVGC 140 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK-ISNIV 183 +L C FC T Q RNL EI+ QV A ++G + S GR+ I+N+V Sbjct: 141 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGS-----------LKSSGRRPITNVV 189 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N +NV ++ I D G SKRR+T+STSG VP + ++G+ I V LAISL Sbjct: 190 MMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTISTSGVVPALDKLGDMIDVALAISL 249 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALN 301 HA ++D+R+ +VPIN+KY +E + + Y SNA R+T EYVML INDS A Sbjct: 250 HAPTDDVRDEIVPINKKYNIETFLASVNRYLTKSNANAGRVTVEYVMLDHINDSVEQAHQ 309 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L + LK P+KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AA Sbjct: 310 LAECLKNTPSKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAA 369 Query: 362 CGQL---------KSLSKRIPKVPRQ 378 CGQL ++L KR+ P Q Sbjct: 370 CGQLAGDVIDRTKRTLKKRLAGEPIQ 395 >gi|302878623|ref|YP_003847187.1| radical SAM enzyme, Cfr family [Gallionella capsiferriformans ES-2] gi|302581412|gb|ADL55423.1| radical SAM enzyme, Cfr family [Gallionella capsiferriformans ES-2] Length = 363 Score = 289 bits (740), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 155/333 (46%), Positives = 205/333 (61%), Gaps = 16/333 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WIY G DF M+DI+ +R+ L Q I P+IV E++S DGTRKWLL Sbjct: 24 FRAKQLLRWIYQVGESDFAAMTDIAAVLRNKLAQSACITVPDIVREELSDDGTRKWLL-- 81 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +E VYIPE +RGTLC+SSQ GC+L CSFC TG Q RNLT EI+ Q+ Sbjct: 82 ---SVGSGNAVEAVYIPESARGTLCISSQAGCALDCSFCSTGKQGFNRNLTVAEIIGQLW 138 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A LG ++ EG +SN+VMMGMGEPL NFDN +L + D Sbjct: 139 WANHQLG-----KNSEG------NWPVSNVVMMGMGEPLLNFDNTVSALRLMLDDQAYGL 187 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+T+STSG VP + R+ EE V LA+SLHA ++ LR+ LVP+N+KYPL+ L+ AC+ Sbjct: 188 SRRRVTVSTSGIVPAMDRLREECPVALAVSLHAPNDALRDKLVPVNQKYPLKELLGACQR 247 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + ITFEYVML G+ND+ + A L++++K P K NLIPFNP+P Y S Sbjct: 248 YLEKAPRDFITFEYVMLDGVNDTVQHAHELVRLVKDTPCKFNLIPFNPFPLSPYKRSRPD 307 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F + + ++ + R RG DI AACGQL Sbjct: 308 AIQRFRDVLMQADIITTTRKTRGDDIAAACGQL 340 >gi|192359958|ref|YP_001981965.1| radical SAM enzyme, Cfr family [Cellvibrio japonicus Ueda107] gi|190686123|gb|ACE83801.1| radical SAM enzyme, Cfr family [Cellvibrio japonicus Ueda107] Length = 402 Score = 289 bits (739), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 160/362 (44%), Positives = 215/362 (59%), Gaps = 21/362 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+GM +L IG + R Q+ KWI+ G +F MS++S+ +R L Sbjct: 32 KVNLLGMPEAKLIAFFESIG----EKKFRAIQVMKWIHQLGADNFDDMSNVSKALRAKLK 87 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I PE+V + S DGTRK+L+R GG V +ETV+IP+ RGTLCVSSQVGCS Sbjct: 88 DCAEIYAPEVVRQLDSADGTRKFLIRVA----GGNV-VETVFIPDGDRGTLCVSSQVGCS 142 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q R+LTA EI+ QV +A G + R ++N+VMM Sbjct: 143 LDCSFCATGKQGFNRDLTAAEIIGQVWIAAKSFGQLQA----------NGPRTVTNVVMM 192 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++++ SKRR+TLSTSG VP + R+ + LAISLHA Sbjct: 193 GMGEPLLNFDNVVDAMNLMMHDNAYGISKRRVTLSTSGVVPQLDRLSQYTDACLAISLHA 252 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY--PGLSNARRITFEYVMLKGINDSPRDALNLI 303 +++LRN LVPINRKYP+ ML+D+ R Y R+IT EY ++ +ND P+ A L Sbjct: 253 PNDELRNELVPINRKYPIAMLLDSARRYIQSMPDTHRKITIEYTLIDQVNDRPQHAQQLA 312 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++L+ +P KINLIPFNP+ Y + F + + + GY + +RT RG DI AACG Sbjct: 313 ELLRDVPVKINLIPFNPFNLSNYKRVSNNALRKFQDILMQEGYITTVRTTRGDDIDAACG 372 Query: 364 QL 365 QL Sbjct: 373 QL 374 >gi|71065245|ref|YP_263972.1| hypothetical protein Psyc_0679 [Psychrobacter arcticus 273-4] gi|123748144|sp|Q4FTX0|RLMN_PSYA2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|71038230|gb|AAZ18538.1| conserved hypothetical protein [Psychrobacter arcticus 273-4] Length = 409 Score = 289 bits (739), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 161/369 (43%), Positives = 223/369 (60%), Gaps = 20/369 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+GM + +L + IG R++Q+ KWIY +G+ DF+ M+++S+ +R L+ Sbjct: 28 KTNLLGMTQAQLADYFKSIG----EKPFRSTQVIKWIYQQGVTDFEQMTNLSKSLRDKLS 83 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVSS 120 + +I P+++ + S DGTRKW+ GG + +ETV IP R TLC+SS Sbjct: 84 ANACVIPPKVIHRQYSDDGTRKWVFE----VTGGSL-VETVLIPADDSKLNGRKTLCISS 138 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR-SLLGDFPGCEDIEGMVIPSVGRKI 179 QVGC+L CSFC TG Q R+LTA EIL Q+ +A S + D + +E + + Sbjct: 139 QVGCALDCSFCSTGKQGFERDLTAAEILGQLWVANASYMSD--ENDSLENIDHSLWENNV 196 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 +N+VMMGMGEPL N+ V S+ + SKRR+TLSTSG VP + + +E+ V L Sbjct: 197 TNVVMMGMGEPLLNYRPVVSSMELMLSDHAYGLSKRRVTLSTSGVVPKMYELAKELDVAL 256 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR---RITFEYVMLKGINDSP 296 AISLHA +++LRN LVPIN+KYPLE L+ A R+Y N R +T EYVML G+NDS Sbjct: 257 AISLHAPNDELRNELVPINKKYPLEQLMAAARNYVFDVNPRHKKHVTIEYVMLDGVNDSN 316 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 A L+ +L +P+KINLIPFNP+P Y S I FS + +G+ IR RG Sbjct: 317 EHAEQLVALLGDLPSKINLIPFNPFPHANYDKSSNNRIHAFSNILSEAGFVCTIRQTRGD 376 Query: 357 DILAACGQL 365 DI AACGQL Sbjct: 377 DIDAACGQL 385 >gi|167854516|ref|ZP_02477297.1| hypothetical protein HPS_02019 [Haemophilus parasuis 29755] gi|167854271|gb|EDS25504.1| hypothetical protein HPS_02019 [Haemophilus parasuis 29755] Length = 386 Score = 289 bits (739), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 158/363 (43%), Positives = 218/363 (60%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+++ E ++G R Q+ KWIY G +F M++I++ +R L Sbjct: 18 EKINLLNLNRQQMRELFAEMG----EKPFRADQLMKWIYHFGEDNFDNMTNINKVLREKL 73 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PE+ E+ S DGT KW + G +IETVYIPE R TLCVSSQVGC Sbjct: 74 KRIAEIKAPEVAVEQRSADGTIKWAMWV------GDQQIETVYIPEDDRATLCVSSQVGC 127 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNL+ EI+ QV A ++G+F G I R I+N+VM Sbjct: 128 ALACTFCSTAQQGFNRNLSVSEIIGQVWRASKIIGNF-GVTGI---------RPITNVVM 177 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D SKRR+TLSTSG VP + ++ E+I V LAISLH Sbjct: 178 MGMGEPLLNMNNVIPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKMREQIDVALAISLH 237 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LRN L+P+N+KY ++MLID+ Y +SNA ++T EYVML +ND A L Sbjct: 238 APNDELRNELIPLNKKYNIKMLIDSVNKYLEVSNANHGKVTIEYVMLSHVNDDVEHAHQL 297 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK P+KINLIP+NP+P Y S I F + + G++ +R RG DI AAC Sbjct: 298 ADVLKNTPSKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVTVRKTRGDDIHAAC 357 Query: 363 GQL 365 GQL Sbjct: 358 GQL 360 >gi|209521129|ref|ZP_03269857.1| radical SAM enzyme, Cfr family [Burkholderia sp. H160] gi|209498439|gb|EDZ98566.1| radical SAM enzyme, Cfr family [Burkholderia sp. H160] Length = 383 Score = 289 bits (739), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 150/341 (43%), Positives = 208/341 (60%), Gaps = 10/341 (2%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ DF GM+D+++ +R L +I P +V + IS DGTRKWL+ Sbjct: 29 FRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRATITMPGVVSDHISSDGTRKWLID- 87 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETVYIPE++RGTLCVSSQ GC++ C FC TG Q RNLT EI+ Q+ Sbjct: 88 ----VGNGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLTTGEIIGQLR 143 Query: 153 LARSLLGDFPGCEDIEGMVIPSVG---RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209 +A L G D G + G R ++N+VMMGMGEPL N+D V ++ + D Sbjct: 144 MAEFALRASRG--DAGGRAMGGDGKGERVVTNVVMMGMGEPLLNYDAVVPAMRLMLDDNA 201 Query: 210 LSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 S+RR+TLSTSG VP + R+G ++ V LA+SLHA ++ LR+ LVP+N+KYPL L+ A Sbjct: 202 YGLSRRRVTLSTSGVVPMMDRLGADLPVALAVSLHAPNDALRDELVPLNKKYPLRELMAA 261 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 C Y ++ ITFEY ML G+NDS A L+ + + +P K NLIPFNP+P + S Sbjct: 262 CERYLKVAPRDFITFEYCMLDGVNDSEAHARQLLAVTRDVPCKFNLIPFNPFPESGLIRS 321 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 Q+ I F++ + +G + +R RG DI AACGQL K Sbjct: 322 KQEQIKRFAQVLIDAGVVTTVRKTRGDDIDAACGQLAGAVK 362 >gi|148653702|ref|YP_001280795.1| radical SAM protein [Psychrobacter sp. PRwf-1] gi|205829828|sp|A5WGQ4|RLMN_PSYWF RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|148572786|gb|ABQ94845.1| radical SAM enzyme, Cfr family [Psychrobacter sp. PRwf-1] Length = 403 Score = 289 bits (739), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 160/372 (43%), Positives = 219/372 (58%), Gaps = 25/372 (6%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 N K +++GM +E+L IG R +Q+ KWIY G+ DF M+++S+ +R Sbjct: 19 NAPTKTNILGMNQEQLGAYFKHIG----EKPFRATQVMKWIYQHGVTDFAQMTNLSKGLR 74 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE-----KSRGTL 116 L++ I PE++ ++ S DGTRKW+ + + G +ETV IP R TL Sbjct: 75 EKLSEQACIELPEVMHKEFSEDGTRKWVFK-----VAGGSLVETVLIPADDSKVNGRKTL 129 Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176 C+SSQVGC+L CSFC TG Q R+LTA EI+ Q+ +A + +EG+ Sbjct: 130 CISSQVGCALDCSFCSTGKQGFERDLTAAEIIGQLWVANASY--------MEGVDSTEWQ 181 Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236 ++N+VMMGMGEPL N+ V S+ + SKRR+TLSTSG VP + + ++I Sbjct: 182 NNVTNVVMMGMGEPLLNYTPVVSSMGLMLSDHAYGLSKRRVTLSTSGVVPKMYELYKDID 241 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR---RITFEYVMLKGIN 293 V LAISLHA +++LRN LVPIN+KYPL LI A + Y +N R +T EYVML G+N Sbjct: 242 VALAISLHAPNDELRNELVPINKKYPLSELIAAAKAYVHDNNPRHKKHVTIEYVMLAGVN 301 Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353 DS A L+ +L G+P+KINLIPFNP+P Y S I FS + +G+ IR Sbjct: 302 DSDEHAQQLVALLDGLPSKINLIPFNPFPHAPYDRSSNNRIHAFSNILNNAGFVCTIRQT 361 Query: 354 RGLDILAACGQL 365 RG DI AACGQL Sbjct: 362 RGDDIDAACGQL 373 >gi|270264732|ref|ZP_06192997.1| hypothetical protein SOD_i01490 [Serratia odorifera 4Rx13] gi|270041415|gb|EFA14514.1| hypothetical protein SOD_i01490 [Serratia odorifera 4Rx13] Length = 398 Score = 288 bits (738), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 159/362 (43%), Positives = 215/362 (59%), Gaps = 22/362 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E K+G R Q+ KWIY DF+ M+DI++ +R+ L Sbjct: 31 KINLLDLNRQQMREFFAKMG----EKPFRADQVMKWIYHYCCDDFEQMTDINKVLRNKLQ 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I PE+ +E+ S DGT KW + G ++ETV+IP+ R TLCVSSQVGC+ Sbjct: 87 SVAEIRAPEVAEEQRSADGTIKWAITV------GDQQVETVFIPDGDRATLCVSSQVGCA 140 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + R I+N+VMM Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGALKVTGE----------RPITNVVMM 190 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 191 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++ +R+ +VPINRKY +E + A R Y SNA R+T EYVML INDS DA L Sbjct: 251 PNDKIRDEIVPINRKYNIETFLAAVRRYLEKSNANQGRVTVEYVMLDHINDSTDDAHQLA 310 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AACG Sbjct: 311 EVLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 370 Query: 364 QL 365 QL Sbjct: 371 QL 372 >gi|153873084|ref|ZP_02001783.1| conserved hypothetical protein [Beggiatoa sp. PS] gi|152070449|gb|EDN68216.1| conserved hypothetical protein [Beggiatoa sp. PS] Length = 358 Score = 288 bits (738), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 155/337 (45%), Positives = 204/337 (60%), Gaps = 19/337 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R +Q+ KWI+ + + DF M+++S+ +R L + I P++ +IS D TRKWLL+ Sbjct: 15 FRATQVMKWIHQQAVLDFDAMTNLSKTLRQRLKEIACISLPQVYKTQISQDDTRKWLLQ- 73 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + IE V+IPE RGTLC+SSQ+GC+L CSFC T Q RNL EI+ Q+ Sbjct: 74 ----LDNGNSIEMVFIPEDGRGTLCISSQIGCALDCSFCATAQQGFNRNLNTAEIIAQLW 129 Query: 153 LARSLL----GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 LA L D P + R ISN+VMMGMGEPL N +NV K++ I D Sbjct: 130 LAEHQLCSTKDDRPK----------NYQRTISNVVMMGMGEPLTNLNNVIKAIKIMKDDF 179 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 G S +RITLST+G VP R+ E+ V LA+SLHA + LR+ LVPIN+KYP+ L+ Sbjct: 180 GYGLSWQRITLSTAGIVPAFKRLKEQCPVSLAVSLHAPDDALRDQLVPINKKYPINELLA 239 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 ACR Y R ITFEY+MLK INDS A L+K+++GIPAK+NLIPFN +P Y Sbjct: 240 ACRAYVKGEPRRTITFEYIMLKNINDSQSHAHALVKLIQGIPAKVNLIPFNTFPDTPYQS 299 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 S K I F + + ++G + R RG DI AACGQL Sbjct: 300 SSIKTIDDFRDILLKAGLITITRKTRGDDIDAACGQL 336 >gi|332534669|ref|ZP_08410500.1| ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas haloplanktis ANT/505] gi|332035881|gb|EGI72363.1| ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas haloplanktis ANT/505] Length = 376 Score = 288 bits (738), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 162/366 (44%), Positives = 220/366 (60%), Gaps = 20/366 (5%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M KK +L+ + R+ + E G R+ Q+ KWIY G+ +F M+++++++ Sbjct: 1 MTEQKKINLLDLNRDAMRELFASFG----EKPFRSDQVMKWIYHFGVDNFDEMTNVNKKL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 + L I+ PEI + + DGT K+ L + G E+E V+IPEK R TLCVSS Sbjct: 57 KEKLKAECEIVAPEITVRQQASDGTIKYAL-----ILEGGQEVEAVWIPEKERATLCVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC+L C+FC T Q RNL EI+ QV +G ++G S R ++ Sbjct: 112 QVGCALECTFCSTAQQGFNRNLKVSEIIGQVWRVAKDIG-------LDGH---SEKRPVT 161 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N NV ++ + D G SKRR+TLSTSG VP + + E+I V LA Sbjct: 162 NVVMMGMGEPLLNLKNVVPAMELMMDDWGFGLSKRRVTLSTSGVVPALDLLKEKIDVALA 221 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDA 299 ISLHA N LR+ILVP+N+KYP+E + ACR Y S A + +T EYVML GINDS A Sbjct: 222 ISLHAPDNALRDILVPVNKKYPIEEFLAACRRYIDGSKANKDVTVEYVMLNGINDSTDQA 281 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L++ LKG P+K+NLIPFNP+PG EY S I FS+ ++ +G + +R RG DI Sbjct: 282 HALVQTLKGTPSKVNLIPFNPFPGNEYTRSSNSRIDRFSKVLQAAGVTCIVRRTRGDDID 341 Query: 360 AACGQL 365 AACGQL Sbjct: 342 AACGQL 347 >gi|238794833|ref|ZP_04638434.1| Ribosomal RNA large subunit methyltransferase N [Yersinia intermedia ATCC 29909] gi|238725846|gb|EEQ17399.1| Ribosomal RNA large subunit methyltransferase N [Yersinia intermedia ATCC 29909] Length = 398 Score = 288 bits (738), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 158/363 (43%), Positives = 216/363 (59%), Gaps = 24/363 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ + ++G R Q+ KWIY DF+ M+DI++ +R L Sbjct: 31 KINLLDLNRQQMRQFFAEMG----EKPFRADQVMKWIYHYCFDDFEQMTDINKVLRAKLQ 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+ +E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC+ Sbjct: 87 RVAEIRAPEVTEEQRSTDGTIKWAIKV------GDQQVETVYIPEGDRATLCVSSQVGCA 140 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIVM 184 L C FC T Q RNL EI+ QV A ++G + + G R I+N+VM Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG-----------AVKATGIRPITNVVM 189 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 190 MGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 249 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHY--PGLSNARRITFEYVMLKGINDSPRDALNL 302 A ++D+R+ +VPINRKY +E + A R Y +N R+T EYVML INDS A L Sbjct: 250 APTDDIRDEIVPINRKYNIEAFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSVEQAHQL 309 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AAC Sbjct: 310 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 369 Query: 363 GQL 365 GQL Sbjct: 370 GQL 372 >gi|292489050|ref|YP_003531937.1| hypothetical protein EAMY_2582 [Erwinia amylovora CFBP1430] gi|292900179|ref|YP_003539548.1| hypothetical protein EAM_2478 [Erwinia amylovora ATCC 49946] gi|291200027|emb|CBJ47152.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946] gi|291554484|emb|CBA22015.1| UPF0063 protein yfgB [Erwinia amylovora CFBP1430] gi|312173205|emb|CBX81460.1| UPF0063 protein yfgB [Erwinia amylovora ATCC BAA-2158] Length = 388 Score = 288 bits (738), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 163/365 (44%), Positives = 218/365 (59%), Gaps = 24/365 (6%) Query: 5 KKE--SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 KKE +L+ + R+++ E +G R Q+ KWIY DF M+DI++ R+ Sbjct: 18 KKEKINLLDLNRQQMREFFASLG----EKPFRADQVMKWIYHYCCDDFNEMTDINKVFRN 73 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L + I PE+ +E+ S DGT KW ++ +GG ++ETVYIPEK R TLCVSSQV Sbjct: 74 RLQELAEIRAPEVAEEQRSADGTIKWAIQ-----VGGQ-QVETVYIPEKDRATLCVSSQV 127 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L C FC T Q RNL EI+ QV A ++G + G R I+N+ Sbjct: 128 GCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----AAKVTGQ------RPITNV 177 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAIS Sbjct: 178 VMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAIS 237 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDAL 300 LHA ++ +R+ +VPIN+KY +E + + Y G SNA R+T EYVML INDS +A Sbjct: 238 LHAPNDTIRDEIVPINKKYNIETFLASVSRYIGKSNANQGRVTIEYVMLDHINDSTDNAH 297 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L +LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI A Sbjct: 298 ELAALLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDA 357 Query: 361 ACGQL 365 ACGQL Sbjct: 358 ACGQL 362 >gi|254513997|ref|ZP_05126058.1| radical SAM enzyme, Cfr family [gamma proteobacterium NOR5-3] gi|219676240|gb|EED32605.1| radical SAM enzyme, Cfr family [gamma proteobacterium NOR5-3] Length = 381 Score = 288 bits (738), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 154/360 (42%), Positives = 213/360 (59%), Gaps = 21/360 (5%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L+GM R +LE+ L +G R R Q+ KW++ +G DF MS++ + +R L Sbjct: 15 NLLGMSRTQLEDFFLGLG----EKRFRAQQLMKWMHHQGECDFSAMSNLGKALRERLAAI 70 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 + P + + S DGTRKWL+R + G +ETV IP+ +R TLCVSSQVGCSL Sbjct: 71 AEVRPPPVESQHDSSDGTRKWLVR-----VDGGGLVETVLIPDGNRATLCVSSQVGCSLD 125 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 CSFC TG Q R+L+A EI+ QV LA + F GR ++N+VMMGM Sbjct: 126 CSFCSTGKQGFQRDLSAAEIIGQVWLAINSYDAFKSGN----------GRVVTNVVMMGM 175 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL NFDNV ++ + D +G SKRR+TLSTSG VP + ++ E LA+SLHA + Sbjct: 176 GEPLLNFDNVVTAMDLMMDDLGYGISKRRVTLSTSGVVPALDKLAEVSEASLAVSLHAPN 235 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKI 305 ++LRN LVP+NR+YP+ L+D+ R Y ++ +T EY ++ G+ND P A L + Sbjct: 236 DELRNQLVPVNRRYPIAQLLDSARRYIDAQKDKKRVVTIEYTLMAGVNDQPDQARELATL 295 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L P KINLIPFNP+P Y + F + + +G+ +RT RG DI AACGQL Sbjct: 296 LADFPCKINLIPFNPFPNSGYERPSGNAVSRFWQVLVDAGFVVTVRTTRGDDIDAACGQL 355 >gi|296158994|ref|ZP_06841822.1| radical SAM enzyme, Cfr family [Burkholderia sp. Ch1-1] gi|295890869|gb|EFG70659.1| radical SAM enzyme, Cfr family [Burkholderia sp. Ch1-1] Length = 383 Score = 288 bits (737), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 149/339 (43%), Positives = 207/339 (61%), Gaps = 6/339 (1%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ DF GM+D+++ +R L +I P IV + IS DGTRKWL+ Sbjct: 29 FRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRATISMPGIVSDHISTDGTRKWLID- 87 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETVYIPE++RGTLCVSSQ GC++ C FC TG Q RNLT EI+ Q+ Sbjct: 88 ----VGNSNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLTTGEIIGQLR 143 Query: 153 LARSLLGDFPGCEDIEGMVIPSVG-RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 +A L G + G R ++N+VMMGMGEPL N+D V ++ + D Sbjct: 144 MAEFALRASRGVDGGRATGGDGKGERVVTNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYG 203 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S+RR+TLSTSG VP + R+G ++ V LA+SLHA S+ LR++LVP+N+KYPL L+ AC+ Sbjct: 204 LSRRRVTLSTSGVVPMMDRLGADLPVALAVSLHAPSDPLRDMLVPLNKKYPLRELMAACQ 263 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 Y ++ ITFEY ML G+NDS A L+ + + +P K NLIPFNP+P + S Sbjct: 264 RYLKVAPRDFITFEYCMLDGVNDSEAQARELLAVTRDVPCKFNLIPFNPFPESGLIRSKP 323 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 + I F++ + +G + +R RG DI AACGQL K Sbjct: 324 EQIKRFAQVLMDAGVVTTVRKTRGDDIDAACGQLAGAVK 362 >gi|126640570|ref|YP_001083554.1| putative Fe-S-cluster redox enzyme [Acinetobacter baumannii ATCC 17978] Length = 376 Score = 288 bits (737), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 169/363 (46%), Positives = 223/363 (61%), Gaps = 25/363 (6%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 M R ELE+ IG + R Q+ KWI+ + DF M++IS ++R L Q I Sbjct: 1 MSRAELEKFFEDIG----EKKFRAGQVMKWIHQYFVTDFAEMTNISGKLRAKLEQICEIK 56 Query: 72 YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK----SRGTLCVSSQVGCSLT 127 PE+V S DGTRKW+ R G +ETV IP + SR TLC+SSQVGC+L Sbjct: 57 APEVVHRHYSKDGTRKWVFRVGE---GSGSLVETVLIPAEDKTGSRKTLCISSQVGCALD 113 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLAR-SLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 CSFC TG Q R+LT +EI+ Q+ +A S + + P E R ++N+VMMG Sbjct: 114 CSFCSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPVAER---------ERSVTNVVMMG 164 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N+D V S+ I D SKRR+TLSTSG VP I ++ ++I V LAISLHA Sbjct: 165 MGEPLLNYDAVLSSMHIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALAISLHAP 224 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHY---PGLSNARR-ITFEYVMLKGINDSPRDALNL 302 +++LRN LVPIN+KYPL LI AC+ Y G +AR+ +T EYVML+G+ND P A L Sbjct: 225 NDELRNELVPINKKYPLAQLIAACQRYIAKDGNESARKHVTIEYVMLEGVNDQPEHAQQL 284 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +K+LK +P+KINLIPFNP+P Y S + I++F + + +G+ IR RG DI AAC Sbjct: 285 LKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGDDIDAAC 344 Query: 363 GQL 365 GQL Sbjct: 345 GQL 347 >gi|187924520|ref|YP_001896162.1| radical SAM enzyme, Cfr family [Burkholderia phytofirmans PsJN] gi|205829686|sp|B2SXT2|RLMN_BURPP RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|187715714|gb|ACD16938.1| radical SAM enzyme, Cfr family [Burkholderia phytofirmans PsJN] Length = 383 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 149/339 (43%), Positives = 207/339 (61%), Gaps = 6/339 (1%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ DF GM+D+++ +R L +I P IV + IS DGTRKWL+ Sbjct: 29 FRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRATISMPGIVSDNISTDGTRKWLID- 87 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETVYIPE++RGTLCVSSQ GC++ C FC TG Q RNLT EI+ Q+ Sbjct: 88 ----VGNSNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLTTAEIIGQLR 143 Query: 153 LARSLLGDFPGCEDIEGMVIPSVG-RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 +A L G + G R ++N+VMMGMGEPL N+D V ++ + D Sbjct: 144 MAEFALRASRGIDGGRATGGDGKGERVVTNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYG 203 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S+RR+TLSTSG VP + R+G ++ V LA+SLHA S+ LR++LVP+N+KYPL L+ AC+ Sbjct: 204 LSRRRVTLSTSGVVPMMDRLGADLPVALAVSLHAPSDPLRDMLVPLNKKYPLRELMAACQ 263 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 Y ++ ITFEY ML G+NDS A L+ + + +P K NLIPFNP+P + S Sbjct: 264 RYLKVAPRDFITFEYCMLDGVNDSEAQARELLALTRDVPCKFNLIPFNPFPESGLIRSKP 323 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 + I F++ + +G + +R RG DI AACGQL K Sbjct: 324 EQIKRFAQVLMDAGVVTTVRKTRGDDIDAACGQLAGAVK 362 >gi|237654050|ref|YP_002890364.1| radical SAM protein [Thauera sp. MZ1T] gi|237625297|gb|ACR01987.1| radical SAM enzyme, Cfr family [Thauera sp. MZ1T] Length = 382 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 155/339 (45%), Positives = 211/339 (62%), Gaps = 13/339 (3%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI-VDEKISCDGTRKWLLR 91 R Q+ +W++ G DF M+D+++ +R L + ++I P + V + IS DGTRKWLL Sbjct: 29 FRARQVMRWMHHEGCDDFDAMTDVAKSLRAKL-KDLAVIRPPVPVRDSISADGTRKWLLD 87 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 +G +ETV+IPE SRGTLCVSSQ GC+L C+FC TG Q RNL+A EI+ Q+ Sbjct: 88 -----VGNANAVETVFIPETSRGTLCVSSQAGCALDCAFCSTGKQGFNRNLSAAEIIGQL 142 Query: 152 LLARSLLGDFPG-----CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD 206 LA LLG D+E + GR ISN+VMMGMGEPL NFDNV +L + D Sbjct: 143 WLANKLLGAARADAEEHATDLEAGEKDN-GRIISNVVMMGMGEPLANFDNVVTALRLMLD 201 Query: 207 SMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEML 266 S+RR+T+STSG VP + R+ +E V LA+SLHA ++ LR+ LVPIN+KYPL L Sbjct: 202 DHAYGLSRRRVTVSTSGIVPAMDRLRDECPVALAVSLHASNDALRDRLVPINQKYPLREL 261 Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 + AC+ Y + +TFEYVML+G+NDS A L+ +++ P K NLIPFNP+P + Sbjct: 262 MAACQRYLERAPRDFVTFEYVMLEGVNDSDAHARELVALVRDTPCKFNLIPFNPFPDSGF 321 Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 S + I F+ + +G + R RG D+ AACGQL Sbjct: 322 QRSPAERIRRFAGILIDAGIVTTTRKTRGDDVDAACGQL 360 >gi|78484965|ref|YP_390890.1| hypothetical protein Tcr_0620 [Thiomicrospira crunogena XCL-2] gi|123741643|sp|Q31I07|RLMN_THICR RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|78363251|gb|ABB41216.1| radical SAM enzyme, Cfr family [Thiomicrospira crunogena XCL-2] Length = 370 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 162/361 (44%), Positives = 214/361 (59%), Gaps = 21/361 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K L+GM R EL E IG R +Q+ KWI+ G+ DF+ M++IS+ +R L+ Sbjct: 8 KVDLLGMDRAELTEFFASIG----EKPFRAAQVMKWIHQFGVSDFEEMTNISKSLREKLS 63 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I P+IV E+ S DGT KWLL +E V+IPEKSRGTLC+SSQVGC+ Sbjct: 64 KTALIRTPKIVSEQRSADGTIKWLLEVDNHNC-----VEAVFIPEKSRGTLCISSQVGCA 118 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q RNL EI+ Q+ +A LG C+ P R ISN+V M Sbjct: 119 LECSFCSTGQQGFNRNLENWEIVAQMWVANKALG----CK-------PKEERIISNVVFM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N + + I D SKRR+T+ST+G VP I ++ E + V LAISLHA Sbjct: 168 GMGEPLLNVKHTFPTARILMDDNAYGLSKRRVTISTAGVVPAIDKIKESLDVSLAISLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304 +N LR+ LVPIN+KYPLE+L+ A Y G + + +T EYVML +ND A LI+ Sbjct: 228 PNNALRDELVPINKKYPLEVLMPALHRYVEGGHSKKHVTVEYVMLDHVNDRLEHAQQLIE 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L +P K+NLIPFNP+P +Y S + F + + +G + +R RG DI AACGQ Sbjct: 288 LLGDLPCKVNLIPFNPFPNTDYKRSSNNAVHRFKDALMEAGVNCTVRRTRGDDIDAACGQ 347 Query: 365 L 365 L Sbjct: 348 L 348 >gi|297538107|ref|YP_003673876.1| radical SAM enzyme, Cfr family [Methylotenera sp. 301] gi|297257454|gb|ADI29299.1| radical SAM enzyme, Cfr family [Methylotenera sp. 301] Length = 374 Score = 288 bits (736), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 151/349 (43%), Positives = 211/349 (60%), Gaps = 18/349 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +W++ G+ DF+ M+DI++ +R L I P + E++S DGTRKWL+ Sbjct: 31 FRAKQLMRWMHHFGVYDFEQMTDIAKVLREKLVVDAEITLPNVQLEQVSNDGTRKWLI-- 88 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 IETV+IPE RGTLC+SSQVGC+L C+FC TG Q RNL+ EI+ Q+ Sbjct: 89 ---GTDTANSIETVFIPEDDRGTLCISSQVGCALECTFCSTGRQGFNRNLSVSEIIGQLA 145 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 +A L G + ++ + R ISN+VMMGMGEPL N+DNV ++ I D Sbjct: 146 IANQSLRQESGYD-----LLSANDRIISNVVMMGMGEPLANYDNVVTAMQIMLDDNAYGL 200 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+TLSTSG VP + R+ E+ V LA+SLHA ++ LR+++VPIN+KYPL+ L+ AC Sbjct: 201 SRRRVTLSTSGMVPAMDRLKEDCPVALAVSLHAPNDALRDVIVPINKKYPLKELMAACNR 260 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + +TFEYVML G+ND+ A L+ +++ + K NLIPFNP+P Y S Sbjct: 261 YLEKAPRDFVTFEYVMLDGVNDTVEHAHQLLDLVRNVSCKFNLIPFNPFPNSGYDTSKAS 320 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--------KSLSKRIP 373 I F + + ++GY +R RG DI AACGQL K + RIP Sbjct: 321 HIRVFRDILMQAGYVVTVRKTRGEDIDAACGQLAGKVLDKTKRTANRIP 369 >gi|308050460|ref|YP_003914026.1| 23S rRNA m(2)A-2503 methyltransferase [Ferrimonas balearica DSM 9799] gi|307632650|gb|ADN76952.1| 23S rRNA m(2)A-2503 methyltransferase [Ferrimonas balearica DSM 9799] Length = 372 Score = 288 bits (736), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 158/355 (44%), Positives = 210/355 (59%), Gaps = 18/355 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ KWIY G DF+ M++I++ +R L + I+ PEI + S DGT K+ + Sbjct: 27 FRADQVMKWIYHFGADDFEQMTNINKALRAKLAERAVIVAPEISTSQHSSDGTIKFAID- 85 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G E+ETVYIPE R TLCVSSQVGC+L CSFC T Q RNL+ EI+ QV Sbjct: 86 ----VGNGQEVETVYIPESDRATLCVSSQVGCALECSFCSTAQQGFNRNLSVAEIIGQVW 141 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 LG + + R ISN+VMMGMGEPL N NV ++ I D G Sbjct: 142 RVAKYLG----------LKNETGERPISNVVMMGMGEPLLNLSNVVPAMDIMLDDFGFGL 191 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 SKRR+TLSTSG VP + ++G+ I V LAISLHA +++LR++LVP+N+KY +E + + R Sbjct: 192 SKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDELRDVLVPVNKKYNIETFLASVRT 251 Query: 273 Y--PGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 Y +N R+T EYVML INDS A L K++K P KINLIPFNP+PG Y S Sbjct: 252 YLTKSYANKGRVTVEYVMLDHINDSTDQAHELAKVMKDTPCKINLIPFNPYPGSPYGKSS 311 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL-KSLSKRIPKVPRQEMQITG 384 I F++ + G + +R RG DI AACGQL + R ++ ++ MQ G Sbjct: 312 NSRIDRFAKVLMEYGMTVIVRKTRGDDIDAACGQLVGDVRDRTKRMLKKRMQEDG 366 >gi|91784209|ref|YP_559415.1| hypothetical protein Bxe_A1592 [Burkholderia xenovorans LB400] gi|123358658|sp|Q13X26|RLMN_BURXL RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|91688163|gb|ABE31363.1| 23S rRNA m(2)A-2503 methyltransferase [Burkholderia xenovorans LB400] Length = 383 Score = 288 bits (736), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 149/339 (43%), Positives = 207/339 (61%), Gaps = 6/339 (1%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ DF GM+D+++ +R L +I P IV + IS DGTRKWL+ Sbjct: 29 FRARQLQRWIHQYNAADFDGMTDLAKSLREKLKGRATISMPGIVSDHISTDGTRKWLID- 87 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETVYIPE++RGTLCVSSQ GC++ C FC TG Q RNLT EI+ Q+ Sbjct: 88 ----VGNSNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLTTGEIIGQLR 143 Query: 153 LARSLLGDFPGCEDIEGMVIPSVG-RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 +A L G + G R ++N+VMMGMGEPL N+D V ++ + D Sbjct: 144 MAEFALRASRGVDGGRATGGDGKGERVVTNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYG 203 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S+RR+TLSTSG VP + R+G ++ V LA+SLHA S+ LR++LVP+N+KYPL L+ AC+ Sbjct: 204 LSRRRVTLSTSGVVPMMDRLGADLPVALAVSLHAPSDPLRDMLVPLNKKYPLRELMAACQ 263 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 Y ++ ITFEY ML G+NDS A L+ + + +P K NLIPFNP+P + S Sbjct: 264 RYLKVAPRDFITFEYCMLDGVNDSEAQARELLAVTRDVPCKFNLIPFNPFPESGLIRSKP 323 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 + I F++ + +G + +R RG DI AACGQL K Sbjct: 324 EQIKRFAQVLMDAGVITTVRKTRGDDIDAACGQLAGAVK 362 >gi|291327220|ref|ZP_06127407.2| radical SAM enzyme, Cfr family [Providencia rettgeri DSM 1131] gi|291311232|gb|EFE51685.1| radical SAM enzyme, Cfr family [Providencia rettgeri DSM 1131] Length = 426 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 162/384 (42%), Positives = 224/384 (58%), Gaps = 33/384 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+++ E ++G R Q+ KWIY DF M+DI++ +R L Sbjct: 58 QKTNLLDLNRKQMREFFAQMG----EKPFRADQVMKWIYHYCYDDFDQMTDINKVLRAKL 113 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PE+ DE+ S DGT KW ++ G +ETVYIPE R TLCVSSQVGC Sbjct: 114 KEVAEIRAPEVADEQRSSDGTIKWAIKV------GDQLVETVYIPEADRATLCVSSQVGC 167 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK-ISNIV 183 +L C FC T Q RNL EI+ QV A ++G + S GR+ I+N+V Sbjct: 168 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGS-----------LKSSGRRPITNVV 216 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N +NV ++ I D G SKRR+T+STSG VP + ++G+ I V LAISL Sbjct: 217 MMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTISTSGVVPALDKLGDMIDVALAISL 276 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALN 301 HA ++D+R+ +VPIN+KY +E +++ Y SNA R+T EYVML +NDS A Sbjct: 277 HAPTDDIRDDIVPINKKYNIETFLNSVNRYLTKSNANAGRVTVEYVMLDHVNDSVEQAHQ 336 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L + LK P+KINLIP+NP+PG Y S I F + + G+++ +R RG DI AA Sbjct: 337 LAECLKNTPSKINLIPWNPFPGAPYGRSSNSRIDRFCKVLMGYGFTTIVRKTRGDDIDAA 396 Query: 362 CGQL---------KSLSKRIPKVP 376 CGQL ++L KR+ P Sbjct: 397 CGQLAGDVIDRTKRTLKKRLAGEP 420 >gi|157144549|ref|YP_001451868.1| ribosomal RNA large subunit methyltransferase N [Citrobacter koseri ATCC BAA-895] gi|205829699|sp|A8AD69|RLMN_CITK8 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|157081754|gb|ABV11432.1| hypothetical protein CKO_00268 [Citrobacter koseri ATCC BAA-895] Length = 388 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 164/379 (43%), Positives = 221/379 (58%), Gaps = 23/379 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E ++G R Q+ KW+Y +F M+DI++ +R L Sbjct: 21 KINLLDLNRQQMREFFKELG----EKPFRADQVMKWMYHYCSDNFDEMTDINKVLRGKLK 76 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + G +ETVYIPE R TLCVSSQVGC+ Sbjct: 77 EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 130 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + G R I+N+VMM Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITNVVMM 180 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 181 GMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 240 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPINRKY +E +DA R Y SNA R+T EYVML IND A L Sbjct: 241 PNDEIRDEIVPINRKYNIETFLDAVRRYLQKSNANQGRVTIEYVMLDHINDGTEHAHQLA 300 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 360 Query: 364 QLK-SLSKRIPKVPRQEMQ 381 QL + R + R+ MQ Sbjct: 361 QLAGDVIDRTKRTLRKRMQ 379 >gi|329297584|ref|ZP_08254920.1| ribosomal RNA large subunit methyltransferase N [Plautia stali symbiont] Length = 376 Score = 287 bits (734), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 163/379 (43%), Positives = 222/379 (58%), Gaps = 23/379 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+++ E +++G R Q+ KW+Y DF+ M+DI++ +R L Sbjct: 8 EKINLLDLNRQQMREFFVEMG----EKPFRADQVMKWMYHYCCDDFEQMTDINKVLRGKL 63 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q I PE+ +E S DGT KW +R G +ETVYIPE R TLCVSSQVGC Sbjct: 64 MQRAEIRAPEVAEEMRSSDGTIKWAIRV------GDQLVETVYIPEADRATLCVSSQVGC 117 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNL EI+ QV A ++G + G R I+N+VM Sbjct: 118 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----AAKVTGQ------RPITNVVM 167 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 168 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 227 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++ +R+ +VPIN+KY +E + A + Y G SNA R+T EYVML +NDS A L Sbjct: 228 APNDTIRDDIVPINKKYNIEAFLAAVKRYIGKSNANQGRVTIEYVMLDHVNDSTEHAHEL 287 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AAC Sbjct: 288 AALLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAAC 347 Query: 363 GQLK-SLSKRIPKVPRQEM 380 GQL + R + R++M Sbjct: 348 GQLAGDVIDRTKRTLRKKM 366 >gi|33151554|ref|NP_872907.1| hypothetical protein HD0319 [Haemophilus ducreyi 35000HP] gi|81423849|sp|Q7VNZ4|RLMN_HAEDU RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|33147774|gb|AAP95296.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP] Length = 393 Score = 287 bits (734), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 160/363 (44%), Positives = 217/363 (59%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ M R+E+ E L +G R Q+ KWIY G +F MS+I++ +R L Sbjct: 25 EKVNLMNMTRQEMREFLANLG----EKPFRADQLMKWIYHFGEDEFDNMSNINKVLREKL 80 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I P I E+ S DGT KW ++ G +IETVYIPE R TLCVSSQVGC Sbjct: 81 KKVAEIKAPAIAIEQRSSDGTIKWAMQV------GNQQIETVYIPEGDRATLCVSSQVGC 134 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNLT EI+ QV A ++G+F I G+ R I+N+VM Sbjct: 135 ALECKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GITGV------RPITNVVM 184 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D SKRR+TLST+G VP + + E+I V LAISLH Sbjct: 185 MGMGEPLLNMNNVIPAMQIMLDDFAYGLSKRRVTLSTAGVVPALDLMREKIDVALAISLH 244 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +N+LRN ++PIN+KY ++ML+D+ Y +SNA ++T EYV+L +ND A L Sbjct: 245 APNNELRNEIMPINKKYNIKMLMDSVAKYLAVSNANHGKVTIEYVLLDHVNDGTEHAHQL 304 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+P Y S + F + + G++ +R RG DI AAC Sbjct: 305 AEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAAC 364 Query: 363 GQL 365 GQL Sbjct: 365 GQL 367 >gi|254283024|ref|ZP_04957992.1| radical SAM enzyme, Cfr family [gamma proteobacterium NOR51-B] gi|219679227|gb|EED35576.1| radical SAM enzyme, Cfr family [gamma proteobacterium NOR51-B] Length = 380 Score = 287 bits (734), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 156/362 (43%), Positives = 213/362 (58%), Gaps = 21/362 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+GM R ++E +G R R Q+ KWI+ G+ D + M+ + + +R L+ Sbjct: 16 KVNLLGMSRAQMEVFFTDLG----EKRFRAGQVMKWIHHHGVSDIEAMTTLGKALRERLS 71 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + PEI D+K S DGTRKW +R + G +E V IPE SR TLCVSSQVGCS Sbjct: 72 SIAEVRPPEIADQKDSADGTRKWAIR-----VDGGALVEAVLIPEGSRATLCVSSQVGCS 126 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC TG Q R+LT+ EI+ QV LA F + GR ++N+VMM Sbjct: 127 LDCKFCSTGKQGFQRDLTSAEIIGQVWLAIKSYDAFQSGK----------GRVVTNVVMM 176 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV S+S+ +D SKRR+TLSTSG VP + ++ E V LAISLH Sbjct: 177 GMGEPLLNFDNVVSSMSLMTDDWAYGLSKRRVTLSTSGVVPALDKLAECSDVSLAISLHG 236 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARR-ITFEYVMLKGINDSPRDALNLI 303 ++++RN +VPIN++YP+ L+ + R+Y S+ +R +T EY +L G+ND A L Sbjct: 237 PTDEIRNRIVPINKRYPIAELLRSARNYIDAQSDTKRVVTIEYTLLAGVNDQVEHARQLA 296 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LK P KINLIPFN +P + + F + + +GY +RT RG DI AACG Sbjct: 297 VLLKDFPCKINLIPFNDFPHSGFTRPSGNAVSRFWQVLIDAGYVVTVRTTRGDDIDAACG 356 Query: 364 QL 365 QL Sbjct: 357 QL 358 >gi|146312652|ref|YP_001177726.1| hypothetical protein Ent638_3011 [Enterobacter sp. 638] gi|205829755|sp|A4WD95|RLMN_ENT38 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|145319528|gb|ABP61675.1| 23S rRNA m(2)A-2503 methyltransferase [Enterobacter sp. 638] Length = 388 Score = 286 bits (733), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 161/379 (42%), Positives = 222/379 (58%), Gaps = 23/379 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E L++G R Q+ KW+Y +F M+DI++ +R+ L Sbjct: 21 KINLLDLNRQQMREFFLEMG----EKPFRADQVMKWMYHYCSDNFDDMTDINKVLRNKLK 76 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I PE+V+E+ S DGT KW + G +ETVYIPE+ R TLCVSSQVGC+ Sbjct: 77 DVAEIRAPEVVEEQRSADGTIKWAIAV------GDQRVETVYIPEEDRATLCVSSQVGCA 130 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + G R I+N+VMM Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGT------RPITNVVMM 180 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 181 GMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 240 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VP+N+KY +E + A R Y SNA R+T EYVML +ND A L Sbjct: 241 PNDEIRDEIVPVNKKYNIETFLAAVRRYLAKSNANQGRVTIEYVMLDHVNDETDHAHQLA 300 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTTIVRKTRGDDIDAACG 360 Query: 364 QLK-SLSKRIPKVPRQEMQ 381 QL + R + R+ MQ Sbjct: 361 QLAGDVIDRTKRTLRKRMQ 379 >gi|323526580|ref|YP_004228733.1| radical SAM enzyme, Cfr family [Burkholderia sp. CCGE1001] gi|323383582|gb|ADX55673.1| radical SAM enzyme, Cfr family [Burkholderia sp. CCGE1001] Length = 383 Score = 286 bits (733), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 145/339 (42%), Positives = 206/339 (60%), Gaps = 6/339 (1%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ DF GM+D+++ +R L ++ P IV + +S DGTRKWL+ Sbjct: 29 FRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRATLTMPGIVSDHVSADGTRKWLID- 87 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q RNLT EI+ Q+ Sbjct: 88 ----VGNSNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLTTGEIIGQLR 143 Query: 153 LAR-SLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 +A +L R ++N+VMMGMGEPL N+D V ++ + D Sbjct: 144 MAEFALRASLGAAGGRATGGEGKGERVVTNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYG 203 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S+RR+TLSTSG VP + R+G ++ V LA+SLHA S+ LR++LVP+N+KYPL L+ AC+ Sbjct: 204 LSRRRVTLSTSGVVPMMDRLGADLPVALAVSLHAPSDPLRDMLVPLNKKYPLRELMAACQ 263 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 Y ++ ITFEY ML G+NDS A L+ + + +P K NLIPFNP+P + S Q Sbjct: 264 RYLKVAPRDFITFEYCMLDGVNDSEAQARELLALTRDVPCKFNLIPFNPFPESGLVRSKQ 323 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 + I F++ + +G + +R RG DI AACGQL K Sbjct: 324 EQIKRFAQVLMDAGVVTTVRKTRGDDIDAACGQLAGAVK 362 >gi|156932938|ref|YP_001436854.1| ribosomal RNA large subunit methyltransferase N [Cronobacter sakazakii ATCC BAA-894] gi|205829756|sp|A7MGV3|RLMN_ENTS8 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|156531192|gb|ABU76018.1| hypothetical protein ESA_00741 [Cronobacter sakazakii ATCC BAA-894] Length = 388 Score = 286 bits (733), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 163/380 (42%), Positives = 220/380 (57%), Gaps = 23/380 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+ + E +G R Q+ KW+Y DF M+DI++ +R L Sbjct: 20 EKINLLDLNRQAMREFFKTLG----EKPFRADQVMKWMYHYCCDDFDEMTDINKVLRGKL 75 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PE+V+E+ S DGT KW + G +ETVYIPE R TLCVSSQVGC Sbjct: 76 KEVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGC 129 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNL EI+ QV A ++G + G R I+N+VM Sbjct: 130 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----AAKVTGQ------RPITNVVM 179 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 180 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 239 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++++R+ +VPIN+KY +E + A R Y G SNA R+T EYVML +ND A L Sbjct: 240 APNDEIRDEIVPINKKYNIETFLAAVRRYIGKSNANQGRVTIEYVMLDHVNDGTEHAHQL 299 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AAC Sbjct: 300 AELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAAC 359 Query: 363 GQLK-SLSKRIPKVPRQEMQ 381 GQL + R + R+ MQ Sbjct: 360 GQLAGDVIDRTKRTMRKRMQ 379 >gi|219872161|ref|YP_002476536.1| ribosomal RNA large subunit methyltransferase N [Haemophilus parasuis SH0165] gi|219692365|gb|ACL33588.1| predicted Fe-S-cluster redox enzyme [Haemophilus parasuis SH0165] Length = 386 Score = 286 bits (733), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 157/363 (43%), Positives = 218/363 (60%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+++ E ++G R Q+ KWIY G +F M++I++ +R L Sbjct: 18 EKINLLNLNRQQMRELFAEMG----EKPFRADQLMKWIYHFGEDNFDNMTNINKVLREKL 73 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PE+ E+ S DGT KW + G +IETVYIP+ R TLCVSSQVGC Sbjct: 74 KRIAEIKAPEVAVEQRSADGTIKWAMWV------GDQQIETVYIPKDDRATLCVSSQVGC 127 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNL+ EI+ QV A ++G+F G I R I+N+VM Sbjct: 128 ALACTFCSTAQQGFNRNLSVSEIIGQVWRASKIIGNF-GVTGI---------RPITNVVM 177 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D SKRR+TLSTSG VP + ++ E+I V LAISLH Sbjct: 178 MGMGEPLLNMNNVIPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKMREQIDVALAISLH 237 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LRN L+P+N+KY ++MLID+ Y +SNA ++T EYVML +ND A L Sbjct: 238 APNDELRNELIPLNKKYNIKMLIDSVNKYLEVSNANHGKVTIEYVMLSHVNDDVEHAHQL 297 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK P+KINLIP+NP+P Y S I F + + G++ +R RG DI AAC Sbjct: 298 ADVLKNTPSKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVTVRKTRGDDIDAAC 357 Query: 363 GQL 365 GQL Sbjct: 358 GQL 360 >gi|149926356|ref|ZP_01914617.1| hypothetical protein LMED105_13193 [Limnobacter sp. MED105] gi|149824719|gb|EDM83933.1| hypothetical protein LMED105_13193 [Limnobacter sp. MED105] Length = 379 Score = 286 bits (732), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 148/333 (44%), Positives = 203/333 (60%), Gaps = 12/333 (3%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ KWI+ G+ +F M+D+++ R LN I P I+ + +S DGTRKWL Sbjct: 28 FRAKQLAKWIHQSGMDNFDSMTDLAKSFRQNLNSRACIKAPSIISDNVSKDGTRKWLFD- 86 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE+ RGTLCVSSQ GC++ C FC TG Q RNL+ EI+ Q+ Sbjct: 87 ----VGNGDAVETVFIPEERRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTAEIVAQLW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A LL + G + + R ++N+VMMGMGEPL N+D + +L + D Sbjct: 143 KANVLLRE-------AGDRVYAQERPVTNVVMMGMGEPLLNYDALVPALQLMLDDTAYGL 195 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+T+STSG VP + R+ ++ V LA+SLHA ++ LR+ LVP+N+KYPL L+DAC Sbjct: 196 SRRRVTVSTSGVVPFMDRLSQDCPVALAVSLHAPNDALRDHLVPLNKKYPLRELLDACLR 255 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + ITFEYVML G+ND P A L++I K +P K NLIPFNP+P L S Sbjct: 256 YLKFAPRDFITFEYVMLDGVNDKPEHAQQLLEIAKIVPCKFNLIPFNPFPESGLLKSTSP 315 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I TF + + +G + +R RG DI AACGQL Sbjct: 316 AIKTFVDILGGAGVVTTVRKTRGDDIDAACGQL 348 >gi|71908601|ref|YP_286188.1| hypothetical protein Daro_2988 [Dechloromonas aromatica RCB] gi|123760407|sp|Q47BR3|RLMN_DECAR RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|71848222|gb|AAZ47718.1| 23S rRNA m(2)A-2503 methyltransferase [Dechloromonas aromatica RCB] Length = 364 Score = 286 bits (732), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 147/333 (44%), Positives = 206/333 (61%), Gaps = 16/333 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ G+ DF M+DI++ +R L + P +V +K+S DGTRK+L+ Sbjct: 25 FRAKQVLRWIHRSGVADFDAMTDIAKSLREKLKAKAVVAPPAVVSDKLSDDGTRKFLID- 83 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE RGTLC+S+Q GC+L C+FC TG Q RNL+ EI+ Q+ Sbjct: 84 ----VGNGNAVETVFIPEDDRGTLCISTQAGCALDCAFCSTGKQGFNRNLSVAEIIGQLW 139 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A LG G E R ISN+V+MGMGEPL NF+N +L + D Sbjct: 140 QANHALGAVHGDE-----------RVISNVVLMGMGEPLANFENSVAALKLMLDDNAYGL 188 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RRIT+STSG VP + R+G+E V LA+SLHA ++ LR+ LVPIN+KYPL+ L+ AC+ Sbjct: 189 SRRRITVSTSGLVPVMDRLGDECPVALAVSLHAPNDKLRDQLVPINQKYPLKELMAACQR 248 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + ITFEY+ML GIND+ A L+ ++K + K NLIPFNP+PG + S + Sbjct: 249 YLEKAPRDFITFEYIMLDGINDTDAHARELLALVKSVHCKFNLIPFNPFPGSPFRRSPAE 308 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + F++ + ++G + R RG DI AACGQL Sbjct: 309 RVRHFADILMQAGIVTTTRKTRGDDIDAACGQL 341 >gi|206560249|ref|YP_002231013.1| radical SAM superfamily protein [Burkholderia cenocepacia J2315] gi|254807159|sp|B4EAX1|RLMN_BURCJ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|198036290|emb|CAR52186.1| radical SAM superfamily protein [Burkholderia cenocepacia J2315] Length = 379 Score = 286 bits (732), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 147/342 (42%), Positives = 208/342 (60%), Gaps = 16/342 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ DF GM+D+++ +R L SI+ PEI + +S DGTRKWL+ Sbjct: 29 FRAKQLQRWIHQYNAGDFDGMTDLAKSLREKLKGRASIVMPEIASDHVSTDGTRKWLID- 87 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q RNL+ EI+ Q+ Sbjct: 88 ----VGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLR 143 Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 +A R+ LG PG R ++N+VMMGMGEPL N+ V ++ + D Sbjct: 144 MAEFALRASLGRAPGPNG-------KAERVVTNVVMMGMGEPLLNYSAVVPAMRLMLDDN 196 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S+RR+TLSTSG VP + R+G E+ V LA+SLHA ++ LR+ LVP+N+KYPL L+ Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNKKYPLRELMA 256 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 AC+ Y ++ ITFEY ML G+ND+ A L+ + + +P K NLIPFNP+P + Sbjct: 257 ACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRDVPCKFNLIPFNPFPESGLIR 316 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 S + I F++ + +G + +R RG DI AACGQL K Sbjct: 317 SKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDAACGQLAGAVK 358 >gi|260598903|ref|YP_003211474.1| ribosomal RNA large subunit methyltransferase N [Cronobacter turicensis z3032] gi|260218080|emb|CBA32831.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter turicensis z3032] Length = 388 Score = 286 bits (731), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 163/380 (42%), Positives = 220/380 (57%), Gaps = 23/380 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+E+ E +G R Q+ KW+Y DF M+DI++ +R L Sbjct: 20 EKINLLDLNRQEMREFFKTLG----EKPFRADQVMKWMYHYCSDDFDEMTDINKVLRGKL 75 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PE+V+E+ S DGT KW + G +ETVYIPE R TLCVSSQVGC Sbjct: 76 KEVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGC 129 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNL EI+ QV A ++G + G R I+N+VM Sbjct: 130 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----AAKVTGQ------RPITNVVM 179 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 180 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 239 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L Sbjct: 240 APNDEIRDEIVPINKKYNIETFLAAVRRYLDKSNANQGRVTIEYVMLDHVNDGTEHAHQL 299 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AAC Sbjct: 300 AELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAAC 359 Query: 363 GQLK-SLSKRIPKVPRQEMQ 381 GQL + R + R+ MQ Sbjct: 360 GQLAGDVIDRTKRTMRKRMQ 379 >gi|285808444|gb|ADC35970.1| conserved hypothetical protein [uncultured bacterium 98] Length = 358 Score = 286 bits (731), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 155/351 (44%), Positives = 210/351 (59%), Gaps = 26/351 (7%) Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75 ELE AL G + H R QI++W+Y RG+ D Q M+D+S+ +R +L+ F+ P + Sbjct: 14 ELEAALDARGFERFHAR----QIYRWVYKRGVTDLQRMTDLSRALRGVLDTDFTASSPRV 69 Query: 76 VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135 V +++S DGTRK+LL + IE V+IP+ T C+S+QVGC++ C FC TG Sbjct: 70 VTDELSVDGTRKFLL-----ALADGKRIEAVFIPDTPAMTFCISTQVGCAMACGFCLTGK 124 Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195 LVRNLTA EI QV +L G D + NIV+MGMGEPL N+D Sbjct: 125 MGLVRNLTAGEIAGQV----RVLAAATGLAD-----------QAFNIVLMGMGEPLHNYD 169 Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNIL 254 N K+L + GLS S RR+TLST G VP + R+ E + LA+SLHA +++ R+ L Sbjct: 170 NTMKALRMLHSEHGLSISPRRVTLSTVGIVPGLERLAREPLMPNLAVSLHATTDEQRSAL 229 Query: 255 VPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKIN 314 VP NRKYPL +I AC+ +P L RITFEYV+L G+NDSP DA L+++L GI AK+N Sbjct: 230 VPPNRKYPLADIIAACQRFP-LKQRSRITFEYVLLDGVNDSPEDARRLVRLLAGIRAKVN 288 Query: 315 LIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LIP NP PG + + F++ + + +R RG DI AACGQL Sbjct: 289 LIPLNPAPGIPFERPSDARVDRFAQILADRHLTVSVRKSRGQDIRAACGQL 339 >gi|26248881|ref|NP_754921.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli CFT073] gi|227887552|ref|ZP_04005357.1| Fe-S-cluster oxidoreductase [Escherichia coli 83972] gi|300981979|ref|ZP_07175825.1| radical SAM enzyme, Cfr family [Escherichia coli MS 45-1] gi|301047150|ref|ZP_07194245.1| radical SAM enzyme, Cfr family [Escherichia coli MS 185-1] gi|81475264|sp|Q8FF55|RLMN_ECOL6 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|26109287|gb|AAN81489.1|AE016764_171 Hypothetical protein yfgB [Escherichia coli CFT073] gi|227835902|gb|EEJ46368.1| Fe-S-cluster oxidoreductase [Escherichia coli 83972] gi|300300936|gb|EFJ57321.1| radical SAM enzyme, Cfr family [Escherichia coli MS 185-1] gi|300408874|gb|EFJ92412.1| radical SAM enzyme, Cfr family [Escherichia coli MS 45-1] gi|307554540|gb|ADN47315.1| radical SAM enzyme [Escherichia coli ABU 83972] gi|315292442|gb|EFU51794.1| radical SAM enzyme, Cfr family [Escherichia coli MS 153-1] Length = 384 Score = 286 bits (731), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 162/379 (42%), Positives = 221/379 (58%), Gaps = 23/379 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + G +ETVYIPE R TLCVSSQVGC+ Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 126 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + G R I+N+VMM Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITNVVMM 176 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+KY +E + A R Y G SNA R+T EYVML +ND A L Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLGKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356 Query: 364 QLK-SLSKRIPKVPRQEMQ 381 QL + R + R+ MQ Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375 >gi|226328008|ref|ZP_03803526.1| hypothetical protein PROPEN_01899 [Proteus penneri ATCC 35198] gi|225203712|gb|EEG86066.1| hypothetical protein PROPEN_01899 [Proteus penneri ATCC 35198] Length = 357 Score = 286 bits (731), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 153/336 (45%), Positives = 203/336 (60%), Gaps = 20/336 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI KW+Y DF M+DI++ +R+ L + I PE+ +E+ S DGT KW ++ Sbjct: 13 FRADQIMKWMYHYCYDDFDQMTDINKVLRNKLKEIAEIKAPEVSEEQRSTDGTIKWAIKV 72 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G ++ETVYIPE R TLCVSSQVGC+L C FC T Q RNL EI+ QV Sbjct: 73 ------GDQQVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVW 126 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A ++G + GR+ I+N+VMMGMGEPL N +NV +L I D G Sbjct: 127 RAAKIIGS-----------LKETGRRPITNVVMMGMGEPLLNLNNVIPALEIMMDDFGFG 175 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 SKRR+T+STSG VP + ++ + + V LAISLHA ++D+R+ +VPIN+KY + M ++ R Sbjct: 176 LSKRRVTVSTSGVVPALDKLADAVDVALAISLHAPTDDIRDEIVPINKKYNIAMFLEGVR 235 Query: 272 HYPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 Y SNA R+T EYVML INDS A L + LK P KINLIP+NP+PG Y S Sbjct: 236 RYIAKSNANQGRVTVEYVMLDHINDSTEQAHQLAECLKDTPCKINLIPWNPFPGAPYGRS 295 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I FS+ + G+++ +R RG DI AACGQL Sbjct: 296 SNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQL 331 >gi|329897039|ref|ZP_08271811.1| Radical SAM superfamily protein [gamma proteobacterium IMCC3088] gi|328921479|gb|EGG28865.1| Radical SAM superfamily protein [gamma proteobacterium IMCC3088] Length = 383 Score = 286 bits (731), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 157/380 (41%), Positives = 220/380 (57%), Gaps = 22/380 (5%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L+G+ R ++E + G R Q+ KWI+ G+ DF+ M+++S+ +R L++ Sbjct: 15 NLLGLTRAQMEAFFAECG----EKSFRAQQVMKWIHHHGVCDFEAMTNLSKSLRAKLSER 70 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 + PE+V S DGTRKWL+R I G + +E+V IP+ R TLCVSSQVGCSL Sbjct: 71 ACVRPPEVVSRHDSADGTRKWLVR----SIEGGL-VESVLIPDGDRATLCVSSQVGCSLD 125 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 CSFC TG Q R+LTA +I+ QV LA F P R ++N+VMMGM Sbjct: 126 CSFCSTGKQGFERDLTASDIIGQVWLAIDSFDAFQ----------PGKDRVVTNVVMMGM 175 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL NFD V ++ + D + SKRR+TLSTSG VP + ++ E V LA+SLHA + Sbjct: 176 GEPLLNFDAVVSAMDLMMDDLAYGLSKRRVTLSTSGVVPALDKLAEVSCVSLAVSLHAPN 235 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKI 305 + LRN LVPIN+KYP+ L+ + + Y N R+ +T EY ++ G+ND P A L + Sbjct: 236 DALRNQLVPINKKYPIAELLASAQRYLDAQNDRKRVVTIEYTLIAGVNDQPEHARELAVL 295 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LK P KINLIPFN +PG Y + F + + +G+ +RT RG DI AACGQL Sbjct: 296 LKNFPCKINLIPFNAFPGSSYQRPSGNAVSRFWQVLIDAGFIVTVRTTRGDDISAACGQL 355 Query: 366 -KSLSKRIPKVPRQEMQITG 384 + R + R + + G Sbjct: 356 VGDVVDRTKRSQRHKAALEG 375 >gi|238027069|ref|YP_002911300.1| hypothetical protein bglu_1g14480 [Burkholderia glumae BGR1] gi|237876263|gb|ACR28596.1| Hypothetical protein bglu_1g14480 [Burkholderia glumae BGR1] Length = 378 Score = 286 bits (731), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 149/342 (43%), Positives = 206/342 (60%), Gaps = 16/342 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ DF GM+D+++ +R L I PEI + +S DGTRKWL+ Sbjct: 29 FRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRAVIGMPEIASDHVSSDGTRKWLID- 87 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q RNL+ EI+ Q+ Sbjct: 88 ----VGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTAEIVGQLR 143 Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 +A R LG PG R ++N+VMMGMGEPL N+ V ++ + D Sbjct: 144 MAEFALRESLGRAPGPNG-------KAERVVTNVVMMGMGEPLLNYSAVVPAMRLMLDDN 196 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S+RR+TLSTSG VP + R+G E+ V LA+SLHA ++ LR++LVP+N+KYPL L+ Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDMLVPLNKKYPLRELMA 256 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 AC+ Y ++ ITFEY ML GIND+ A L+ + + +P K NLIPFNP+P L Sbjct: 257 ACQRYLAVAPRDFITFEYCMLDGINDTDAHARELLAVTRDVPCKFNLIPFNPFPESGLLR 316 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 S + I FS+ + +G + +R RG DI AACGQL K Sbjct: 317 SKNERIKQFSQILIEAGVVTTVRKTRGDDIDAACGQLAGAVK 358 >gi|320539274|ref|ZP_08038944.1| putative 23S rRNA m(2)A2503 methyltransferase, SAM-dependen [Serratia symbiotica str. Tucson] gi|320030666|gb|EFW12675.1| putative 23S rRNA m(2)A2503 methyltransferase, SAM-dependen [Serratia symbiotica str. Tucson] Length = 399 Score = 285 bits (730), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 157/364 (43%), Positives = 216/364 (59%), Gaps = 22/364 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K +L+ + R+++ E ++G R Q+ KW+Y DF+ M++I++ +R+ Sbjct: 30 VAKINLLDLNRQQMREFFSQMG----EKPFRADQVMKWMYHYCCDDFEQMTEINKVLRNK 85 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L + I PE+ +E+ S DGT KW ++ G ++ETVYIP+ R TLCVSSQVG Sbjct: 86 LQRVAEIRAPEVAEEQCSADGTIKWAIKV------GDQQVETVYIPDGDRATLCVSSQVG 139 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L C FC T Q RNL EI+ QV A ++G I G R I+N+V Sbjct: 140 CALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGALK----IAG------ERPITNVV 189 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISL Sbjct: 190 MMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISL 249 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALN 301 HA ++ +RN +VPINR Y +E + A R Y SNA R+T EYVML INDS DA Sbjct: 250 HAPNDKIRNEIVPINRNYNIESFLAAVRRYLAKSNANQGRVTVEYVMLDHINDSTDDAHQ 309 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L +LK P KINLIP+NP+P Y S + F++ + G+++ +R RG DI AA Sbjct: 310 LANVLKNTPCKINLIPWNPFPAAPYGRSSNSRVDRFAKVLMEYGFTTIVRRTRGDDIDAA 369 Query: 362 CGQL 365 CGQL Sbjct: 370 CGQL 373 >gi|188533171|ref|YP_001906968.1| hypothetical protein ETA_10250 [Erwinia tasmaniensis Et1/99] gi|254807181|sp|B2VE98|RLMN_ERWT9 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|188028213|emb|CAO96071.1| Conserved hypothetical protein YfgB [Erwinia tasmaniensis Et1/99] Length = 389 Score = 285 bits (730), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 161/364 (44%), Positives = 217/364 (59%), Gaps = 24/364 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+++ E +G R Q+ KWIY DF M+DI++ R+ L Sbjct: 21 EKINLLDLNRQQMREFFAGLG----EKPFRADQVMKWIYHYCCDDFDEMTDINKVFRNRL 76 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PE+ +E+ S DGT KW ++ +GG ++ETVYIPEK R TLCVSSQVGC Sbjct: 77 KELAEIRAPEVAEEQRSSDGTIKWAIQ-----VGGQ-QVETVYIPEKDRATLCVSSQVGC 130 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIV 183 +L C FC T Q RNL EI+ QV A ++G +G R I+N+V Sbjct: 131 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG-----------ATKVIGQRPITNVV 179 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISL Sbjct: 180 MMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISL 239 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALN 301 HA ++ +R+ +VPIN+KY +E + + Y G SNA R+T EYVML INDS +A Sbjct: 240 HAPNDTIRDEIVPINKKYNIETFLASVSRYIGKSNANQGRVTIEYVMLDHINDSTDNAHE 299 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L +LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AA Sbjct: 300 LAALLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAA 359 Query: 362 CGQL 365 CGQL Sbjct: 360 CGQL 363 >gi|167587047|ref|ZP_02379435.1| radical SAM enzyme, Cfr family protein [Burkholderia ubonensis Bu] Length = 379 Score = 285 bits (730), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 146/342 (42%), Positives = 210/342 (61%), Gaps = 16/342 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ DF GM+D+++ +R L SI+ P+IV + +S DGTRKWL+ Sbjct: 29 FRAKQLQRWIHQYNAGDFDGMTDLAKSLREKLKGRASIVMPDIVSDHVSTDGTRKWLID- 87 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q RNL+ EI+ Q+ Sbjct: 88 ----VGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLR 143 Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 +A R+ LG PG R ++N+VMMGMGEPL N+ V ++ + D Sbjct: 144 MAEFALRASLGRAPGPNG-------KAERVVTNVVMMGMGEPLLNYSAVVPAMRLMLDDN 196 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S+RR+TLSTSG VP + R+G E+ V LA+SLHA ++ LR++LVP+N+K+PL L+ Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDMLVPLNKKHPLRELMA 256 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 AC+ Y ++ ITFEY ML G+ND+ A L+ + + +P K NLIPFNP+P + Sbjct: 257 ACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRDVPCKFNLIPFNPFPESGLIR 316 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 S + I F++ + +G + +R RG DI AACGQL K Sbjct: 317 SKPEQIKRFAQILIDAGVVTTVRKTRGDDIDAACGQLAGAVK 358 >gi|319790295|ref|YP_004151928.1| radical SAM enzyme, Cfr family [Thermovibrio ammonificans HB-1] gi|317114797|gb|ADU97287.1| radical SAM enzyme, Cfr family [Thermovibrio ammonificans HB-1] Length = 345 Score = 285 bits (730), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 154/356 (43%), Positives = 217/356 (60%), Gaps = 26/356 (7%) Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75 EL+E + +G R QI +W+Y + + F M+++S+E R LL++ I ++ Sbjct: 11 ELKEFVTSLGFEP----YRAKQIAQWLYKKRVSSFDQMTNLSKEARKLLSEKAQIDLLKL 66 Query: 76 VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135 V + S DGTRK+L + IE+V+IPEK TLCVS+QVGC C FC T Sbjct: 67 VKVEESKDGTRKYLFE-----LEDGSRIESVFIPEKDWNTLCVSTQVGCPAGCRFCLTAK 121 Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195 RNLTA EI+ Q + + +G+ R+ISN+V MGMGEPL NFD Sbjct: 122 DGFTRNLTAGEIVDQYIQVQRDVGE---------------NRRISNVVFMGMGEPLLNFD 166 Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDLRNIL 254 NVKK++ I + L S R++T+ST G VP I R+ +E+ V LA+SLHA ++++RN+L Sbjct: 167 NVKKAVEIMTHRDMLDLSTRKVTVSTVGIVPGIDRMAKEMNKVKLAVSLHATTDEVRNML 226 Query: 255 VPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKIN 314 VP+NRKYP+ ++ A R YP N RRI EYVMLKG+NDS DA L+K++KGIP K+N Sbjct: 227 VPLNRKYPIGEIMAALRRYPA-DNNRRIMIEYVMLKGVNDSLEDARRLVKLVKGIPVKVN 285 Query: 315 LIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 LIPFNP+PG E+ + ++ I F + + ++ IR RG DI AACG L++ K Sbjct: 286 LIPFNPYPGAEFEPTPREQIEAFQKVLWDHNIAAFIRDSRGQDISAACGMLRTKEK 341 >gi|152979682|ref|YP_001345311.1| hypothetical protein Asuc_2030 [Actinobacillus succinogenes 130Z] gi|205829707|sp|A6VQX9|RLMN_ACTSZ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|150841405|gb|ABR75376.1| radical SAM enzyme, Cfr family [Actinobacillus succinogenes 130Z] Length = 371 Score = 285 bits (730), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 155/363 (42%), Positives = 217/363 (59%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L Sbjct: 3 EKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 58 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC Sbjct: 59 KQVAEIKAPEVAVEQRSSDGTIKWAMQV------GDQQVETVYIPEADRATLCVSSQVGC 112 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F G I R I+N+VM Sbjct: 113 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF-GVTGI---------RPITNVVM 162 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+T+STSG VP + ++ E I V LAISLH Sbjct: 163 MGMGEPLLNMANVVPAMEIMLDDFAYGLSKRRVTISTSGVVPALDKLPEMIDVALAISLH 222 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ +VPIN+KY ++ML+D+ Y +SNA ++T EYV+L +ND A L Sbjct: 223 APNDELRDEIVPINKKYNIKMLMDSVNRYLSVSNANHGKVTIEYVLLDHVNDGTEHAHQL 282 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK P KINLIP+NP+P Y S + F + + G++ +R RG DI AAC Sbjct: 283 ADVLKNTPCKINLIPWNPFPEAPYAKSSNSRVDRFQKTLMEYGFTVTVRKTRGDDIDAAC 342 Query: 363 GQL 365 GQL Sbjct: 343 GQL 345 >gi|172060774|ref|YP_001808426.1| radical SAM protein [Burkholderia ambifaria MC40-6] gi|205829677|sp|B1YR46|RLMN_BURA4 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|171993291|gb|ACB64210.1| radical SAM enzyme, Cfr family [Burkholderia ambifaria MC40-6] Length = 379 Score = 285 bits (730), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 146/342 (42%), Positives = 209/342 (61%), Gaps = 16/342 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ DF GM+D+++ +R L SI+ PEI + +S DGTRKWL+ Sbjct: 29 FRAKQLQRWIHQYNAGDFDGMTDLAKSLREKLKGRASIVMPEIASDHVSADGTRKWLID- 87 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q RNL+ EI+ Q+ Sbjct: 88 ----VGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLR 143 Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 +A R+ LG PG R ++N+VMMGMGEPL N++ V ++ + D Sbjct: 144 MAEFALRASLGRAPGPNG-------KAERVVTNVVMMGMGEPLLNYNAVVPAMRLMLDDN 196 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S+RR+TLSTSG VP + R+G E+ V LA+SLHA ++ LR+ LVP+N+K+PL L+ Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNKKHPLRELMA 256 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 AC+ Y ++ ITFEY ML G+ND+ A L+ + + +P K NLIPFNP+P + Sbjct: 257 ACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRDVPCKFNLIPFNPFPESGLIR 316 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 S + I F++ + +G + +R RG DI AACGQL K Sbjct: 317 SKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDAACGQLAGAVK 358 >gi|257093692|ref|YP_003167333.1| radical SAM enzyme, Cfr family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046216|gb|ACV35404.1| radical SAM enzyme, Cfr family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 373 Score = 285 bits (730), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 152/335 (45%), Positives = 202/335 (60%), Gaps = 15/335 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +W++ G DF M+DI++ +R L ++ P ++ +++S DGTRK+L Sbjct: 25 FRARQVLRWLHRFGQLDFDAMTDIARSLREKLRATAQVLPPVVIADRLSDDGTRKFLFD- 83 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +GG +E V+IPE RGTLC+S+Q GC+L CSFC TG Q RNLT EI+ Q+ Sbjct: 84 ----VGGGNAVEAVFIPEAERGTLCISTQAGCALDCSFCSTGKQGFNRNLTVAEIVGQLW 139 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 AR LG + E G R ISN+V+MGMGEPL N DN +L + D Sbjct: 140 QARHSLGAYAAGETAGGE------RVISNVVLMGMGEPLANLDNTVTALRLMLDDNAYGL 193 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+T+STSG VP + R+ E V LA+SLHA ++ LR+ LVPINRKYPL L+ AC Sbjct: 194 SRRRVTVSTSGLVPAMDRLRNECPVALAVSLHAPNDRLRDELVPINRKYPLHELMSACLR 253 Query: 273 YPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 Y L A R +TFEYVML G+NDS A L+ + + +P K NLIPFNP+PG Y S Sbjct: 254 Y--LEKAPRDFVTFEYVMLAGVNDSDAQAHELLALTRDVPCKFNLIPFNPFPGSPYHRSS 311 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F+E + +G + R RG DI AACGQL Sbjct: 312 APRIRQFAETLIDAGVVTTTRKTRGDDIDAACGQL 346 >gi|152971378|ref|YP_001336487.1| ribosomal RNA large subunit methyltransferase N [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238895973|ref|YP_002920709.1| ribosomal RNA large subunit methyltransferase N [Klebsiella pneumoniae NTUH-K2044] gi|262040254|ref|ZP_06013505.1| cfr family radical SAM enzyme [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330007776|ref|ZP_08306073.1| 23S rRNA m2A2503 methyltransferase [Klebsiella sp. MS 92-3] gi|205829779|sp|A6TCD6|RLMN_KLEP7 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|150956227|gb|ABR78257.1| putative pyruvate formate lyase activating enzyme 2 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238548291|dbj|BAH64642.1| putative pyruvate formate lyase activating enzyme 2 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259042363|gb|EEW43383.1| cfr family radical SAM enzyme [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328535320|gb|EGF61805.1| 23S rRNA m2A2503 methyltransferase [Klebsiella sp. MS 92-3] Length = 388 Score = 285 bits (730), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 161/380 (42%), Positives = 221/380 (58%), Gaps = 25/380 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E +G R Q+ KW+Y DF M+DI++ +R L Sbjct: 21 KINLLDLNRQQMREFFKNMG----EKPFRADQVMKWMYHYCCDDFDEMTDINKVLRSKLK 76 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + G +ETVYIPE+ R TLCVSSQVGC+ Sbjct: 77 EVAEIRAPEVVEEQRSTDGTIKWAIAV------GDQRVETVYIPEEDRATLCVSSQVGCA 130 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIVM 184 L C FC T Q RNL EI+ QV A ++G + + G R I+N+VM Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG-----------AVKTTGVRPITNVVM 179 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 180 MGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 239 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++ +R+ +VPIN+KY +E +++ R Y SNA R+T EYVML +ND A L Sbjct: 240 APNDTIRDEIVPINKKYNIETFLNSVRGYISKSNANQGRVTIEYVMLDHVNDGTEHAHEL 299 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AAC Sbjct: 300 AALLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAAC 359 Query: 363 GQLK-SLSKRIPKVPRQEMQ 381 GQL + R + R+ MQ Sbjct: 360 GQLAGDVIDRTKRTLRKRMQ 379 >gi|257453867|ref|ZP_05619145.1| radical SAM enzyme, Cfr family [Enhydrobacter aerosaccus SK60] gi|257448794|gb|EEV23759.1| radical SAM enzyme, Cfr family [Enhydrobacter aerosaccus SK60] Length = 399 Score = 285 bits (729), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 155/372 (41%), Positives = 221/372 (59%), Gaps = 25/372 (6%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 + K +L+GM + EL + +G R +Q+ KWIY G+ DF M+++S++++ Sbjct: 17 DLTAKTNLLGMSKAELGQFFADLG----EKPFRATQVMKWIYQFGVTDFYQMTNLSKKLQ 72 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTL 116 L++ ++ P + ++ S DGTRKW+ + G +ETV IP R TL Sbjct: 73 ETLDEVATVSPPTVKFKQFSEDGTRKWVFE-----VAGGSLVETVLIPADDNKQFGRKTL 127 Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176 C+SSQVGC+L CSFC TG Q R+L+ EI+ Q+ +A +E + + Sbjct: 128 CISSQVGCALDCSFCSTGKQGFERDLSPSEIIGQLWVANQSY--------MENVPVTERE 179 Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236 +++N+VMMGMGEPL N++ V S+S+ D G SKRR+TLSTSG VP + + ++I Sbjct: 180 NRVTNVVMMGMGEPLLNYEPVVASMSLMLDDFGFGLSKRRVTLSTSGIVPKMYELAKDID 239 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR---RITFEYVMLKGIN 293 V LAISLHA +++LRN LVPIN+KYPL+ LI A + Y N R +T EYVMLK +N Sbjct: 240 VALAISLHAPNDELRNELVPINKKYPLKELIAAAKSYVYDENPRHKKHVTIEYVMLKDVN 299 Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353 D+ A L+ +LK +P KINLIPFNP+P Y S I FS + ++G+ IR Sbjct: 300 DTDEHARQLVNLLKDLPCKINLIPFNPFPHAPYGRSSNNRIHAFSNILNQAGFVCTIRQT 359 Query: 354 RGLDILAACGQL 365 RG DI AACGQL Sbjct: 360 RGDDIDAACGQL 371 >gi|206580011|ref|YP_002237132.1| radical SAM enzyme, Cfr family [Klebsiella pneumoniae 342] gi|288934092|ref|YP_003438151.1| radical SAM enzyme, Cfr family [Klebsiella variicola At-22] gi|290508289|ref|ZP_06547660.1| cfr family radical SAM enzyme [Klebsiella sp. 1_1_55] gi|254807185|sp|B5XNL2|RLMN_KLEP3 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|206569069|gb|ACI10845.1| radical SAM enzyme, Cfr family [Klebsiella pneumoniae 342] gi|288888821|gb|ADC57139.1| radical SAM enzyme, Cfr family [Klebsiella variicola At-22] gi|289777683|gb|EFD85680.1| cfr family radical SAM enzyme [Klebsiella sp. 1_1_55] Length = 388 Score = 285 bits (729), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 161/380 (42%), Positives = 221/380 (58%), Gaps = 25/380 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E +G R Q+ KW+Y DF M+DI++ +R L Sbjct: 21 KINLLDLNRQQMREFFKNMG----EKPFRADQVMKWMYHYCCDDFDEMTDINKVLRGKLK 76 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + G +ETVYIPE+ R TLCVSSQVGC+ Sbjct: 77 EVAEIRAPEVVEEQRSTDGTIKWAIAV------GDQRVETVYIPEEDRATLCVSSQVGCA 130 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIVM 184 L C FC T Q RNL EI+ QV A ++G + + G R I+N+VM Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG-----------AVKTTGVRPITNVVM 179 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 180 MGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 239 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++ +R+ +VPIN+KY +E +++ R Y SNA R+T EYVML +ND A L Sbjct: 240 APNDTIRDEIVPINKKYNIETFLNSVRGYISKSNANQGRVTIEYVMLDHVNDGTEHAHEL 299 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AAC Sbjct: 300 AALLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAAC 359 Query: 363 GQLK-SLSKRIPKVPRQEMQ 381 GQL + R + R+ MQ Sbjct: 360 GQLAGDVIDRTKRTLRKRMQ 379 >gi|56461137|ref|YP_156418.1| ribosomal RNA large subunit methyltransferase N [Idiomarina loihiensis L2TR] gi|81363032|sp|Q5QYC0|RLMN_IDILO RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|56180147|gb|AAV82869.1| Predicted Fe-S-cluster redox enzyme [Idiomarina loihiensis L2TR] Length = 378 Score = 285 bits (729), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 166/385 (43%), Positives = 229/385 (59%), Gaps = 26/385 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + RE ++E ++G R Q+ KW+Y + DF M+++++ +R L Sbjct: 7 KKVNLLDLNREGIKEFFREMG----EKPFRAEQVMKWLYHFCVDDFDEMTNLNKALREKL 62 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q I PE+ +++ S DGT ++F G ++ETV+IPE R TLCVSSQVGC Sbjct: 63 KQVAEIRAPEVREQQQSSDGT----IKFAMTLFDGQ-DVETVWIPEGDRATLCVSSQVGC 117 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC TG Q RNL+ EI+ QV LLG + G I + ++N+VM Sbjct: 118 ALECTFCSTGAQGFNRNLSVAEIIGQVWRVNQLLGAY-GKTGI---------KPVTNVVM 167 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ + D +G SKRR+TLSTSG VP + ++ E I VMLAISLH Sbjct: 168 MGMGEPLLNLNNVVPAMELMLDDLGFGLSKRRVTLSTSGVVPALEKLRERIDVMLAISLH 227 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA-RRITFEYVMLKGINDSPRDALNLI 303 A ++LRN +VPIN+KY +E + + R Y S A R++T EYVML +NDS A L Sbjct: 228 APDDELRNEIVPINKKYNIEEFLASSRRYVEQSKAQRKVTVEYVMLDHVNDSTDQAHALA 287 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K LK P+KINLIPFNP+PG +Y S I F++ + G + +R RG DI AACG Sbjct: 288 KTLKDTPSKINLIPFNPFPGSDYGRSSNSRIDRFAKVLMEYGLTVMVRKTRGDDIDAACG 347 Query: 364 QLK----SLSKRIPKVPRQEMQITG 384 QL +KRI K RQ+ Q G Sbjct: 348 QLVGDVIDRTKRILK--RQQKQRGG 370 >gi|115351803|ref|YP_773642.1| radical SAM protein [Burkholderia ambifaria AMMD] gi|122323090|sp|Q0BEW5|RLMN_BURCM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|115281791|gb|ABI87308.1| 23S rRNA m(2)A-2503 methyltransferase [Burkholderia ambifaria AMMD] Length = 379 Score = 285 bits (729), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 146/342 (42%), Positives = 209/342 (61%), Gaps = 16/342 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ DF GM+D+++ +R L SI+ PEI + +S DGTRKWL+ Sbjct: 29 FRAKQLQRWIHQYNAGDFDGMTDLAKSLREKLKGRASIVMPEIASDHVSTDGTRKWLID- 87 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q RNL+ EI+ Q+ Sbjct: 88 ----VGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLR 143 Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 +A R+ LG PG R ++N+VMMGMGEPL N++ V ++ + D Sbjct: 144 MAEFALRASLGRAPGPNG-------KAERVVTNVVMMGMGEPLLNYNAVVPAMRLMLDDN 196 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S+RR+TLSTSG VP + R+G E+ V LA+SLHA ++ LR+ LVP+N+K+PL L+ Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNKKHPLRELMA 256 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 AC+ Y ++ ITFEY ML G+ND+ A L+ + + +P K NLIPFNP+P + Sbjct: 257 ACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRDVPCKFNLIPFNPFPESGLIR 316 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 S + I F++ + +G + +R RG DI AACGQL K Sbjct: 317 SKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDAACGQLAGAVK 358 >gi|237732496|ref|ZP_04562977.1| 23S rRNA methyltransferase [Citrobacter sp. 30_2] gi|226908035|gb|EEH93953.1| 23S rRNA methyltransferase [Citrobacter sp. 30_2] Length = 388 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 162/380 (42%), Positives = 222/380 (58%), Gaps = 25/380 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E ++G R Q+ KW+Y +F M+DI++ +R+ L Sbjct: 21 KINLLDLNRQQMREFFKEMG----EKPFRADQVMKWMYHYCSDNFDDMTDINKVLRNKLK 76 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + G +ETVYIPE R TLCVSSQVGC+ Sbjct: 77 EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 130 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIVM 184 L C FC T Q RNL EI+ QV A ++G + + G R I+N+VM Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG-----------AVKATGVRPITNVVM 179 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 180 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 239 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML IND A L Sbjct: 240 APNDEIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHINDGTEHAHQL 299 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AAC Sbjct: 300 AELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAAC 359 Query: 363 GQLK-SLSKRIPKVPRQEMQ 381 GQL + R + R+ MQ Sbjct: 360 GQLAGDVIDRTKRTLRKRMQ 379 >gi|21672555|ref|NP_660622.1| hypothetical protein BUsg275 [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25091617|sp|Q8K9P5|RLMN_BUCAP RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|21623181|gb|AAM67833.1| hypothetical 43.1 kDa protein [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 363 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 156/362 (43%), Positives = 217/362 (59%), Gaps = 24/362 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+E+E LL +G + T Q+ KWIY R +F MS++ +++R LN Sbjct: 14 KINLLDLNRKEIEIFLLSLGAK----KFVTDQLMKWIYNRHCNNFNLMSNLKKDIRKKLN 69 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I ++EKIS DGT KW+ + +IET+YIPEK R TLCVSSQ+GCS Sbjct: 70 ERSYIFASNFIEEKISYDGTVKWITSIDKQ------KIETIYIPEKKRATLCVSSQIGCS 123 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC TG Q RNL EI+ Q+ A +L + I+NIV M Sbjct: 124 LKCKFCATGQQGFNRNLKVSEIISQIWQANKILKE------------KKNNSTITNIVFM 171 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRRITLSTSG VP + ++ ++I V LAISLHA Sbjct: 172 GMGEPLLNLNNVISAIKIILDKNGFGLSKRRITLSTSGIVPALNKLIKKIDVSLAISLHA 231 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNLI 303 ++ +RN ++PIN KY ++ +++ Y S+A R +T EYVML+GIND A L Sbjct: 232 PNDFIRNSIMPINMKYNIKSFLNSVSKYLKHSHANRGGVTVEYVMLRGINDLNEHAEELG 291 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ILK IP+KINLIP+N + ++CS + I F+ +++ G+++ IR RG DI AACG Sbjct: 292 NILKKIPSKINLIPWNFFKNANFICSSKNRINIFANILRKKGFNTTIRKNRGQDIGAACG 351 Query: 364 QL 365 QL Sbjct: 352 QL 353 >gi|317490866|ref|ZP_07949302.1| cfr family radical SAM enzyme [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920413|gb|EFV41736.1| cfr family radical SAM enzyme [Enterobacteriaceae bacterium 9_2_54FAA] Length = 419 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 159/366 (43%), Positives = 216/366 (59%), Gaps = 22/366 (6%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 N +K +L+ + R+++ E K+G R Q+ KW+Y +F M+DI++ +R Sbjct: 48 NTSEKINLLDLDRQQMREFFAKLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLR 103 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 + L + I PE+ +E+ S DGT KW ++ G +ETVYIPE R TLCVSSQ Sbjct: 104 NKLKEIAEIRAPEVAEEQRSTDGTIKWAIQV------GDQRVETVYIPEDDRATLCVSSQ 157 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC+L C FC T Q RNL EI+ QV A ++G + G R I+N Sbjct: 158 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----AHKVTGQ------RPITN 207 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 +VMMGMGEPL N +NV +++I D G SKRR+TLSTSG VP + ++G+ I V LAI Sbjct: 208 VVMMGMGEPLLNLNNVVPAMNIMLDDFGFGLSKRRVTLSTSGVVPALEKLGDMIDVALAI 267 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299 SLHA ++++R+ +VPINRKY +E + A R Y SNA R+T EYVML IND A Sbjct: 268 SLHAPTDEIRDEIVPINRKYNIETFLGAVRRYLEKSNANQGRVTVEYVMLDHINDGMEHA 327 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L + LK P KINLIP+NP+PG Y S + FS+ + G++ +R RG DI Sbjct: 328 HQLAECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTVIVRKTRGDDID 387 Query: 360 AACGQL 365 AACGQL Sbjct: 388 AACGQL 393 >gi|51245787|ref|YP_065671.1| hypothetical protein DP1935 [Desulfotalea psychrophila LSv54] gi|81641926|sp|Q6ALW1|RLMN_DESPS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|50876824|emb|CAG36664.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54] Length = 362 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 160/365 (43%), Positives = 221/365 (60%), Gaps = 21/365 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K L + +++L E K+G P R QI W+Y +RDF+ M+D+++ R LL Sbjct: 10 EKIDLKNLSQDQLVEFAEKLGQPA----FRGRQIMSWLYRPEVRDFEQMTDLAKVFRKLL 65 Query: 65 --NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 N FS I++ + ++F R G V IETV IPE R TLC+SSQV Sbjct: 66 AENSFFSHFDDPIIER------AKDGCVKFGFRLHDGHV-IETVLIPEPDRNTLCISSQV 118 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC++ C+FC TG RNLT EI+ QV AR L + P + ++ P +++N+ Sbjct: 119 GCAMKCTFCMTGGMGFTRNLTPSEIVNQVCAARDFLANEPA----DKLIGPD---RVTNV 171 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 V MGMGEPL N +NV S+SI ++ GL + RRIT+ST G V N+AR+G+E V LAIS Sbjct: 172 VYMGMGEPLNNLENVLTSISILTEQKGLDLTGRRITVSTCGIVANMARLGQEAPVNLAIS 231 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHAV + R++L+P+N +YPL+ L++ACR YP + RRI FEY+ML GINDS +A L Sbjct: 232 LHAVDDKTRDMLMPVNNRYPLDELLEACRTYP-MGKRRRIMFEYIMLAGINDSDTEARTL 290 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + L+ IP KINLIP+N PG Y K I++F ++ + YS IR RG DI AAC Sbjct: 291 ARKLQEIPCKINLIPYNESPGLPYKSPGMKRILSFQNILREANYSVFIRNSRGEDIAAAC 350 Query: 363 GQLKS 367 GQL + Sbjct: 351 GQLAT 355 >gi|107029007|ref|YP_626102.1| hypothetical protein Bcen_6265 [Burkholderia cenocepacia AU 1054] gi|116689835|ref|YP_835458.1| radical SAM protein [Burkholderia cenocepacia HI2424] gi|170733174|ref|YP_001765121.1| radical SAM protein [Burkholderia cenocepacia MC0-3] gi|123179922|sp|Q1BGX6|RLMN_BURCA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829678|sp|B1JT94|RLMN_BURCC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829679|sp|A0K7T8|RLMN_BURCH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|105898171|gb|ABF81129.1| 23S rRNA m(2)A-2503 methyltransferase [Burkholderia cenocepacia AU 1054] gi|116647924|gb|ABK08565.1| 23S rRNA m(2)A-2503 methyltransferase [Burkholderia cenocepacia HI2424] gi|169816416|gb|ACA90999.1| radical SAM enzyme, Cfr family [Burkholderia cenocepacia MC0-3] Length = 379 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 146/342 (42%), Positives = 208/342 (60%), Gaps = 16/342 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ DF GM+D+++ +R L SI+ P+I + +S DGTRKWL+ Sbjct: 29 FRAKQLQRWIHQYNAGDFDGMTDLAKSLREKLKGRASIVMPDIASDHVSTDGTRKWLID- 87 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q RNL+ EI+ Q+ Sbjct: 88 ----VGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLR 143 Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 +A R+ LG PG R ++N+VMMGMGEPL N+ V ++ + D Sbjct: 144 MAEFALRASLGRAPGPNG-------KAERVVTNVVMMGMGEPLLNYSAVVPAMRLMLDDN 196 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S+RR+TLSTSG VP + R+G E+ V LA+SLHA ++ LR+ LVP+N+KYPL L+ Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNKKYPLRELMA 256 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 AC+ Y ++ ITFEY ML G+ND+ A L+ + + +P K NLIPFNP+P + Sbjct: 257 ACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRDVPCKFNLIPFNPFPESGLIR 316 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 S + I F++ + +G + +R RG DI AACGQL K Sbjct: 317 SKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDAACGQLAGAVK 358 >gi|145631818|ref|ZP_01787577.1| hypothetical protein CGSHi22421_06593 [Haemophilus influenzae R3021] gi|144982537|gb|EDJ90091.1| hypothetical protein CGSHi22421_06593 [Haemophilus influenzae R3021] Length = 383 Score = 284 bits (727), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 158/363 (43%), Positives = 216/363 (59%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L Sbjct: 14 KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 69 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC Sbjct: 70 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F + G+ R I+N+VM Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ +VPINRKY ++MLID+ Y +SNA ++T EYVML +ND A L Sbjct: 234 APNDELRDEIVPINRKYNIQMLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+P Y S I F + + ++ IR RG DI AAC Sbjct: 294 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAAC 353 Query: 363 GQL 365 GQL Sbjct: 354 GQL 356 >gi|170703874|ref|ZP_02894562.1| radical SAM enzyme, Cfr family [Burkholderia ambifaria IOP40-10] gi|171321348|ref|ZP_02910305.1| radical SAM enzyme, Cfr family [Burkholderia ambifaria MEX-5] gi|170131219|gb|EDS99858.1| radical SAM enzyme, Cfr family [Burkholderia ambifaria IOP40-10] gi|171093366|gb|EDT38556.1| radical SAM enzyme, Cfr family [Burkholderia ambifaria MEX-5] Length = 379 Score = 284 bits (727), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 146/342 (42%), Positives = 208/342 (60%), Gaps = 16/342 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ DF GM+D+++ +R L SI+ PEI + +S DGTRKWL+ Sbjct: 29 FRAKQLQRWIHQYNAGDFDGMTDLAKSLREKLKGRASIVMPEIASDHVSTDGTRKWLID- 87 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q RNL+ EI+ Q+ Sbjct: 88 ----VGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLR 143 Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 +A R+ LG PG R ++N+VMMGMGEPL N+ V ++ + D Sbjct: 144 MAEFALRASLGRAPGPNG-------KAERVVTNVVMMGMGEPLLNYSAVVPAMRLMLDDN 196 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S+RR+TLSTSG VP + R+G E+ V LA+SLHA ++ LR+ LVP+N+K+PL L+ Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNKKHPLRELMA 256 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 AC+ Y ++ ITFEY ML G+ND+ A L+ + + +P K NLIPFNP+P + Sbjct: 257 ACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRDVPCKFNLIPFNPFPESGLIR 316 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 S + I F++ + +G + +R RG DI AACGQL K Sbjct: 317 SKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDAACGQLAGAVK 358 >gi|17545931|ref|NP_519333.1| hypothetical protein RSc1212 [Ralstonia solanacearum GMI1000] gi|81505540|sp|Q8Y032|RLMN_RALSO RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|17428226|emb|CAD14914.1| conserved hypothetical protein 48 [Ralstonia solanacearum GMI1000] Length = 383 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 147/337 (43%), Positives = 207/337 (61%), Gaps = 20/337 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ G DF M+D+++ +R L +I P ++ + +S DGTRKWL+ Sbjct: 27 FRAKQLQRWIHQSGAADFGEMTDLAKSLREKLATRATIQAPAVISDHLSSDGTRKWLVD- 85 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETVYIPE++RGTLCVSSQ GC++ C FC TG Q RNL+ EI+ Q+ Sbjct: 86 ----VGAGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLW 141 Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 +A R LG P + R I+N+VMMGMGEPL N+D V ++ + D Sbjct: 142 MAEFAMRKQLGRGPKDD-----------RVITNVVMMGMGEPLLNYDAVVPAMRLMLDDN 190 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S+RR+TLSTSG VP + R+ +++ V LA+SLHA ++ LR++LVP+N+KYPL L+ Sbjct: 191 AYGLSRRRVTLSTSGVVPMMDRLSQDLPVALAVSLHASNDALRDVLVPLNKKYPLAELMA 250 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 ACR Y + ITFEY ML G+NDS A L++++ +P K NLIPFNP+P Sbjct: 251 ACRRYLEFAPRDFITFEYCMLDGVNDSVEHARELLRVVADVPCKFNLIPFNPFPESGLKR 310 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 S+ + I FS+ + +G + IR RG DI AACGQL Sbjct: 311 SNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDAACGQL 347 >gi|299067263|emb|CBJ38460.1| conserved protein of unknown function, predicted radical SAM enzyme [Ralstonia solanacearum CMR15] Length = 383 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 147/337 (43%), Positives = 206/337 (61%), Gaps = 20/337 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ G DF M+D+++ +R L +I P ++ + +S DGTRKWL+ Sbjct: 27 FRAKQLQRWIHQSGAADFGEMTDLAKSLREKLATRATIQAPAVISDNLSSDGTRKWLVD- 85 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETVYIPE++RGTLCVSSQ GC++ C FC TG Q RNL+ EI+ Q+ Sbjct: 86 ----VGAGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLW 141 Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 +A R LG P + R I+N+VMMGMGEPL N+D V ++ + D Sbjct: 142 MAEFAMRKQLGRGPKDD-----------RVITNVVMMGMGEPLLNYDAVVPAMRLMLDDN 190 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S+RR+TLSTSG VP + R+ ++ V LA+SLHA ++ LR++LVP+N+KYPL L+ Sbjct: 191 AYGLSRRRVTLSTSGVVPMMDRLSHDLPVALAVSLHASNDALRDVLVPLNKKYPLAELVA 250 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 ACR Y + ITFEY ML G+NDS A L++++ +P K NLIPFNP+P Sbjct: 251 ACRRYLEFAPRDFITFEYCMLDGVNDSVEHARELLRVVADVPCKFNLIPFNPFPESGLKR 310 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 S+ + I FS+ + +G + IR RG DI AACGQL Sbjct: 311 SNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDAACGQL 347 >gi|300717954|ref|YP_003742757.1| Fe-S containing enzyme [Erwinia billingiae Eb661] gi|299063790|emb|CAX60910.1| putative Fe-S containing enzyme [Erwinia billingiae Eb661] Length = 389 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 161/379 (42%), Positives = 222/379 (58%), Gaps = 23/379 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+++ E +G R Q+ KW+Y DF M+DI++ R+ L Sbjct: 21 EKINLLDLNRQQMREFFASMG----EKPFRADQVMKWMYHYCCDDFDEMTDINKVFRNRL 76 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PE+ E+ S DGT KW + +GG ++ETVYIPEK R TLCVSSQVGC Sbjct: 77 KEVAEIRAPEVATEQRSTDGTIKWAI-----TVGGQ-QVETVYIPEKDRATLCVSSQVGC 130 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNL EI+ QV A ++G I G R I+N+VM Sbjct: 131 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----ASKITGT------RPITNVVM 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 181 MGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 240 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++ +R+ +VP+N+KY +E + + Y SNA R+T EYVML +NDS +A L Sbjct: 241 APNDTIRDEIVPVNKKYNIETFLASVSRYIAKSNANQGRVTIEYVMLDHVNDSTDNAHEL 300 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AAC Sbjct: 301 AALLKNTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTTIVRKTRGDDIDAAC 360 Query: 363 GQLK-SLSKRIPKVPRQEM 380 GQL + R + R++M Sbjct: 361 GQLAGEVIDRTKRTLRKKM 379 >gi|303252097|ref|ZP_07338266.1| hypothetical protein APP2_1072 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307248296|ref|ZP_07530322.1| hypothetical protein appser2_12750 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302649079|gb|EFL79266.1| hypothetical protein APP2_1072 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855230|gb|EFM87407.1| hypothetical protein appser2_12750 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 393 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 157/363 (43%), Positives = 218/363 (60%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+E+ E ++G R Q+ KWIY G +F MS+I++ +R L Sbjct: 25 EKINLMNLTRKEMRELFAEMG----EKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKL 80 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q I PE+ E+ S DGT KW ++ G +IETVYIPE R TLCVSSQVGC Sbjct: 81 KQIAEIKAPEVSVEQRSSDGTIKWAMQV------GDQQIETVYIPEDDRATLCVSSQVGC 134 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNLT EI+ QV A ++G+F + G+ R I+N+VM Sbjct: 135 ALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 184 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D SKRR+TLST+G VP + + E+I V LAISLH Sbjct: 185 MGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKIDVALAISLH 244 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ ++PIN+KY +EML+D+ Y +SNA ++T EYV+L +ND A L Sbjct: 245 APNDELRDEIMPINKKYNIEMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQL 304 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+P Y S + F + + G++ +R RG DI AAC Sbjct: 305 AEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAAC 364 Query: 363 GQL 365 GQL Sbjct: 365 GQL 367 >gi|251788745|ref|YP_003003466.1| ribosomal RNA large subunit methyltransferase N [Dickeya zeae Ech1591] gi|247537366|gb|ACT05987.1| radical SAM enzyme, Cfr family [Dickeya zeae Ech1591] Length = 392 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 162/383 (42%), Positives = 220/383 (57%), Gaps = 23/383 (6%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 N +K +L+ R+++ ++G R Q+ KWIY DF M+DI++ +R Sbjct: 21 NSNEKINLLDFNRQQMRAFFAELG----EKPFRADQVMKWIYHYCCDDFNQMTDINKVLR 76 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L I PE+VDE+ S DGT KW + + +ETVYIPE+ R TLCVSSQ Sbjct: 77 GKLQAIAEIRAPEVVDEQRSSDGTIKWAILVDGQ------RVETVYIPEEDRATLCVSSQ 130 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC+L C FC T Q RNL EI+ QV A ++G + G R I+N Sbjct: 131 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----AAKVTGQ------RPITN 180 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 +VMMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAI Sbjct: 181 VVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAI 240 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299 SLHA ++++RN ++PIN+KY +E + A R Y SNA R+T EYVML IND A Sbjct: 241 SLHAPTDEIRNEIMPINKKYDIETFLAAVRRYLDKSNANQGRVTVEYVMLDHINDGTEHA 300 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI Sbjct: 301 HQLAECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDID 360 Query: 360 AACGQLK-SLSKRIPKVPRQEMQ 381 AACGQL + R + +++MQ Sbjct: 361 AACGQLAGEVVDRTKRTLKKKMQ 383 >gi|283832102|ref|ZP_06351843.1| radical SAM enzyme, Cfr family [Citrobacter youngae ATCC 29220] gi|291071728|gb|EFE09837.1| radical SAM enzyme, Cfr family [Citrobacter youngae ATCC 29220] Length = 388 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 161/380 (42%), Positives = 222/380 (58%), Gaps = 25/380 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E ++G R Q+ KW+Y +F M+DI++ +R+ L Sbjct: 21 KINLLDLNRQQMREFFKEMG----EKPFRADQVMKWMYHYCSDNFDDMTDINKVLRNKLK 76 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + G +ETVYIPE R TLCVSSQVGC+ Sbjct: 77 EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 130 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIVM 184 L C FC T Q RNL EI+ QV A ++G + + G R I+N+VM Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG-----------AVKATGVRPITNVVM 179 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 180 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 239 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L Sbjct: 240 APNDEIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQL 299 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AAC Sbjct: 300 AELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMGYGFTTIVRKTRGDDIDAAC 359 Query: 363 GQLK-SLSKRIPKVPRQEMQ 381 GQL + R + R+ MQ Sbjct: 360 GQLAGDVIDRTKRTLRKRMQ 379 >gi|296104196|ref|YP_003614342.1| 23S rRNA methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058655|gb|ADF63393.1| 23S rRNA methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 388 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 161/379 (42%), Positives = 220/379 (58%), Gaps = 23/379 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E ++G R Q+ KW+Y +F M+DI++ +R+ L Sbjct: 21 KINLLDLNRQQMREFFKELG----EKPFRADQVMKWMYHYCSDNFDDMTDINKVLRNKLK 76 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + G +ETVYIPE R TLCVSSQVGC+ Sbjct: 77 EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 130 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + G R I+N+VMM Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGT------RPITNVVMM 180 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 181 GMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 240 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L Sbjct: 241 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHELA 300 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG Sbjct: 301 ALLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACG 360 Query: 364 QLK-SLSKRIPKVPRQEMQ 381 QL + R + R+ MQ Sbjct: 361 QLAGDVIDRTKRTLRKRMQ 379 >gi|170718501|ref|YP_001783713.1| ribosomal RNA large subunit methyltransferase N [Haemophilus somnus 2336] gi|205829771|sp|B0UWR0|RLMN_HAES2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829859|sp|Q0I3U8|RLMN_HAES1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|168826630|gb|ACA32001.1| radical SAM enzyme, Cfr family [Haemophilus somnus 2336] Length = 372 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 157/362 (43%), Positives = 216/362 (59%), Gaps = 22/362 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ ++G R Q+ KWIY G +F M++I++++R L Sbjct: 4 KINLMNLTRQQMRAFFQELG----EKPFRADQLVKWIYHFGEDNFDHMTNINKKLREKLK 59 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I PEI E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC+ Sbjct: 60 TVAEIKAPEIAVEQRSADGTIKWAMQV------GDQQVETVYIPETDRATLCVSSQVGCA 113 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC T Q RNLT EI+ QV A ++G+F + G+ R I+N+VMM Sbjct: 114 LACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVMM 163 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N NV ++ I D SKRR+TLSTSG VP + ++ E I V LAISLHA Sbjct: 164 GMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKLSEMIDVALAISLHA 223 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 +++LRN +VPIN+KY ++ML+++ Y +SNA ++T EYVML IND A L Sbjct: 224 PNDELRNEIVPINKKYNIKMLMESVNRYLNVSNANHGKVTIEYVMLDHINDGTEHAHQLA 283 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+P Y S I F + + G++ +R RG DI AACG Sbjct: 284 EVLKNTPCKINLIPWNPFPDAPYAKSSNTRIDRFQKTLMEYGFTVILRKTRGDDIDAACG 343 Query: 364 QL 365 QL Sbjct: 344 QL 345 >gi|145589473|ref|YP_001156070.1| radical SAM protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|205829801|sp|A4SYE2|RLMN_POLSQ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|145047879|gb|ABP34506.1| 23S rRNA m(2)A-2503 methyltransferase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 402 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 148/337 (43%), Positives = 205/337 (60%), Gaps = 9/337 (2%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ RG+ D MSD+++ R L ++ ++ ++ + DGTRKWLL Sbjct: 28 FRAKQLMQWIHQRGVSDINDMSDLAKSFRATLLDKVEVLSLPVIKDEHATDGTRKWLLD- 86 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +E+V+IPE RGTLC+SSQ GC++ C FC TG Q RNLT+ EI+ Q+ Sbjct: 87 ----VGAGNAVESVFIPEDDRGTLCISSQAGCAVNCRFCSTGRQGFSRNLTSGEIIGQLW 142 Query: 153 LARSLLGDFP-GCEDIEGMVIPS---VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 A LL + P IE P GR ISN+VMMGMGEPL N+DNV +L + D Sbjct: 143 FAEHLLRNDPEAIRRIEKYPTPGWEHTGRVISNVVMMGMGEPLLNYDNVVSALRLMLDDR 202 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S+RR+T+STSG VP I R+ ++ V LA+SLHA ++ LR+ LVP+N+KYPL L+D Sbjct: 203 AYGLSRRRVTVSTSGVVPMIDRLAQDCPVALAVSLHAPNDALRDQLVPLNQKYPLRELLD 262 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 AC Y + +TFEY ML G+NDS A L+++L+ I KINLIPFNP+P Sbjct: 263 ACERYLPFAPRDFLTFEYCMLDGVNDSDIQAKELVRLLRNIKCKINLIPFNPFPESGLKR 322 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 S + + F+ + +G + +R RG DI AACGQL Sbjct: 323 SSAQRVNAFAGILLDAGMVATVRKTRGDDIAAACGQL 359 >gi|333000705|gb|EGK20281.1| hypothetical protein SFVA6_3397 [Shigella flexneri VA-6] gi|333002312|gb|EGK21876.1| hypothetical protein SFK272_3309 [Shigella flexneri K-272] gi|333016135|gb|EGK35467.1| hypothetical protein SFK227_3146 [Shigella flexneri K-227] Length = 384 Score = 283 bits (725), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 161/379 (42%), Positives = 220/379 (58%), Gaps = 23/379 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKTFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + G +ETVYIPE R TLCVSSQVGC+ Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 126 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + G R I+N+VMM Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITNVVMM 176 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356 Query: 364 QLK-SLSKRIPKVPRQEMQ 381 QL + R + R+ MQ Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375 >gi|68248968|ref|YP_248080.1| ribosomal RNA large subunit methyltransferase N [Haemophilus influenzae 86-028NP] gi|81336620|sp|Q4QNH7|RLMN_HAEI8 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|68057167|gb|AAX87420.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae 86-028NP] Length = 390 Score = 283 bits (725), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 157/363 (43%), Positives = 216/363 (59%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L Sbjct: 21 KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 76 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC Sbjct: 77 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 130 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F + G+ R I+N+VM Sbjct: 131 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH Sbjct: 181 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 240 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ +VPIN+KY ++ LID+ Y +SNA ++T EYVML +ND A L Sbjct: 241 APNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGIEHAHQL 300 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+P Y S I F + + G++ IR RG DI AAC Sbjct: 301 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAAC 360 Query: 363 GQL 365 GQL Sbjct: 361 GQL 363 >gi|300691809|ref|YP_003752804.1| hypothetical protein RPSI07_2165 [Ralstonia solanacearum PSI07] gi|299078869|emb|CBJ51530.1| conserved protein of unknown function, predicted radical SAM enzyme [Ralstonia solanacearum PSI07] Length = 383 Score = 283 bits (725), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 147/337 (43%), Positives = 206/337 (61%), Gaps = 20/337 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ G DF M+D+++ +R L +I P ++ + +S DGTRKWL+ Sbjct: 27 FRAKQLQRWIHQSGAADFGEMTDLAKSLREKLATRATIQAPAVISDHLSSDGTRKWLVD- 85 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETVYIPE++RGTLCVSSQ GC++ C FC TG Q RNL+ EI+ Q+ Sbjct: 86 ----VGAGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIIGQLW 141 Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 +A R LG P + R I+N+VMMGMGEPL N+D V ++ + D Sbjct: 142 MAEFAVRKQLGRGPKDD-----------RVITNVVMMGMGEPLLNYDAVVPAMRLMLDDN 190 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S+RR+TLSTSG VP + R+ ++ V LA+SLHA ++ LR++LVP+N+KYPL L+ Sbjct: 191 AYGLSRRRVTLSTSGVVPMMDRLSRDLPVALAVSLHASNDALRDVLVPLNKKYPLAELMA 250 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 ACR Y + ITFEY ML G+NDS A L++++ +P K NLIPFNP+P Sbjct: 251 ACRRYLEFAPRDFITFEYCMLDGVNDSVEHARELLRVIADVPCKFNLIPFNPFPESGLKR 310 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 S+ + I FS+ + +G + IR RG DI AACGQL Sbjct: 311 SNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDAACGQL 347 >gi|83747944|ref|ZP_00944975.1| Radical SAM family enzyme [Ralstonia solanacearum UW551] gi|207743447|ref|YP_002259839.1| hypothetical protein 48 [Ralstonia solanacearum IPO1609] gi|83725362|gb|EAP72509.1| Radical SAM family enzyme [Ralstonia solanacearum UW551] gi|206594844|emb|CAQ61771.1| conserved hypothetical protein 48 [Ralstonia solanacearum IPO1609] Length = 383 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 147/337 (43%), Positives = 206/337 (61%), Gaps = 20/337 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ G DF M+D+++ +R L +I P ++ + +S DGTRKWL+ Sbjct: 27 FRAKQLQRWIHQSGAADFGEMTDLAKSLREKLATRATIQAPAVISDHLSSDGTRKWLVD- 85 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETVYIPE++RGTLCVSSQ GC++ C FC TG Q RNL+ EI+ Q+ Sbjct: 86 ----VGAGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLW 141 Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 +A R LG P + R I+N+VMMGMGEPL N+D V ++ + D Sbjct: 142 MAEFAMRKQLGRGPKDD-----------RVITNVVMMGMGEPLLNYDAVVPAMRLMLDDN 190 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S+RR+TLSTSG VP + R+ ++ V LA+SLHA ++ LR++LVP+N+KYPL L+ Sbjct: 191 AYGLSRRRVTLSTSGVVPMMDRLSRDLPVALAVSLHASNDALRDVLVPLNKKYPLAELMA 250 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 ACR Y + ITFEY ML G+NDS A L++++ +P K NLIPFNP+P Sbjct: 251 ACRRYLEFAPRDFITFEYCMLDGVNDSVEHARELLRVIADVPCKFNLIPFNPFPESGLKR 310 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 S+ + I FS+ + +G + IR RG DI AACGQL Sbjct: 311 SNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDAACGQL 347 >gi|300704417|ref|YP_003746020.1| hypothetical protein RCFBP_20221 [Ralstonia solanacearum CFBP2957] gi|299072081|emb|CBJ43413.1| conserved protein of unknown function, predicted radical SAM enzyme [Ralstonia solanacearum CFBP2957] Length = 383 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 147/337 (43%), Positives = 206/337 (61%), Gaps = 20/337 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ G DF M+D+++ +R L +I P ++ + +S DGTRKWL+ Sbjct: 27 FRAKQLQRWIHQSGAADFGEMTDLAKSLREKLATRATIQAPAVISDHLSSDGTRKWLVD- 85 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETVYIPE++RGTLCVSSQ GC++ C FC TG Q RNL+ EI+ Q+ Sbjct: 86 ----VGAGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLW 141 Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 +A R LG P + R I+N+VMMGMGEPL N+D V ++ + D Sbjct: 142 MAEFAMRKQLGRGPKDD-----------RVITNVVMMGMGEPLLNYDAVVPAMRLMLDDN 190 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S+RR+TLSTSG VP + R+ ++ V LA+SLHA ++ LR++LVP+N+KYPL L+ Sbjct: 191 AYGLSRRRVTLSTSGVVPMMDRLSHDLPVALAVSLHASNDALRDVLVPLNKKYPLAELMA 250 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 ACR Y + ITFEY ML G+NDS A L++++ +P K NLIPFNP+P Sbjct: 251 ACRRYLEFAPRDFITFEYCMLDGVNDSVEHARELLRVVADVPCKFNLIPFNPFPESGLKR 310 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 S+ + I FS+ + +G + IR RG DI AACGQL Sbjct: 311 SNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDAACGQL 347 >gi|260869206|ref|YP_003235608.1| putative enzyme [Escherichia coli O111:H- str. 11128] gi|257765562|dbj|BAI37057.1| predicted enzyme [Escherichia coli O111:H- str. 11128] gi|323177359|gb|EFZ62947.1| hypothetical protein ECOK1180_3845 [Escherichia coli 1180] Length = 384 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 161/379 (42%), Positives = 220/379 (58%), Gaps = 23/379 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRDKLK 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + G +ETVYIPE R TLCVSSQVGC+ Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 126 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + G R I+N+VMM Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITNVVMM 176 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356 Query: 364 QLK-SLSKRIPKVPRQEMQ 381 QL + R + R+ MQ Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375 >gi|221198083|ref|ZP_03571129.1| radical SAM enzyme, Cfr family [Burkholderia multivorans CGD2M] gi|221204358|ref|ZP_03577375.1| radical SAM enzyme, Cfr family [Burkholderia multivorans CGD2] gi|221212767|ref|ZP_03585743.1| radical SAM enzyme, Cfr family [Burkholderia multivorans CGD1] gi|221166980|gb|EED99450.1| radical SAM enzyme, Cfr family [Burkholderia multivorans CGD1] gi|221175215|gb|EEE07645.1| radical SAM enzyme, Cfr family [Burkholderia multivorans CGD2] gi|221182015|gb|EEE14416.1| radical SAM enzyme, Cfr family [Burkholderia multivorans CGD2M] Length = 378 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 146/342 (42%), Positives = 209/342 (61%), Gaps = 16/342 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ DF GM+D+++ +R L SI P+IV + +S DGTRKWL+ Sbjct: 29 FRAKQLQRWIHQYNAGDFDGMTDLAKSLREKLKGRASITMPDIVSDHVSADGTRKWLVD- 87 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q RNL+ EI+ Q+ Sbjct: 88 ----VGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLR 143 Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 +A R+ LG PG R ++N+VMMGMGEPL N++ V ++ + D Sbjct: 144 MAEFALRASLGRAPGPNG-------KAERVVTNVVMMGMGEPLLNYNAVVPAMRLMLDDN 196 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S+RR+TLSTSG VP + R+G E+ V LA+SLHA ++ LR+ LVP+N+K+PL L+ Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNKKHPLRELMA 256 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 AC+ Y ++ ITFEY ML G+ND+ A L+ + + +P K NLIPFNP+P + Sbjct: 257 ACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRDVPCKFNLIPFNPFPESGLIR 316 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 S + I F++ + +G + +R RG DI AACGQL K Sbjct: 317 SKPEQIKRFAQILIDAGVVTTVRKTRGDDIDAACGQLAGAVK 358 >gi|238921042|ref|YP_002934557.1| ribosomal RNA large subunit methyltransferase N [Edwardsiella ictaluri 93-146] gi|259491987|sp|C5BET4|RLMN_EDWI9 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|238870611|gb|ACR70322.1| radical SAM enzyme, Cfr family [Edwardsiella ictaluri 93-146] Length = 390 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 161/363 (44%), Positives = 212/363 (58%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R ++ E +++G R QI KWIY DF M+DI++ +R L Sbjct: 22 EKINLLDLDRRQMREFFVQMG----EKPFRADQIMKWIYHYCCDDFDAMTDINKVLRARL 77 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q I PE+ E+ S DGT KW L+ G +ETVYIPE R TLCVSSQVGC Sbjct: 78 KQVAEIRAPEVAVEQRSSDGTIKWALQV------GDQRVETVYIPEDDRATLCVSSQVGC 131 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNL EI+ QV A ++G + + G R I+N+VM Sbjct: 132 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----AQKVTG------NRPITNVVM 181 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 182 MGMGEPLLNLTNVIPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDTIDVALAISLH 241 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++ +R+ +VPINRKY ++M + + R Y SNA R+T EYVML IND A L Sbjct: 242 APNDTIRDEIVPINRKYNIDMFLGSVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQL 301 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + LK P KINLIP+NP+PG + S I FS+ + G++ +R RG DI AAC Sbjct: 302 AECLKDTPCKINLIPWNPFPGAPFGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAAC 361 Query: 363 GQL 365 GQL Sbjct: 362 GQL 364 >gi|88703674|ref|ZP_01101390.1| Radical SAM superfamily protein [Congregibacter litoralis KT71] gi|88702388|gb|EAQ99491.1| Radical SAM superfamily protein [Congregibacter litoralis KT71] Length = 381 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 153/364 (42%), Positives = 214/364 (58%), Gaps = 21/364 (5%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K +L GM R +LE L++G R R Q+ KW++ +G DF MS++ + +R Sbjct: 11 VEKVNLFGMSRTQLEAFFLEMG----EKRFRAQQLMKWMHHQGECDFSAMSNLGKALRER 66 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L+ + P + + S DGTRKWL+ + G +ETV IP+ +R TLCVSSQVG Sbjct: 67 LSAIAEVRPPVVESQHDSSDGTRKWLVH-----VDGGGLVETVLIPDGNRATLCVSSQVG 121 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 CSL CSFC TG Q R+L+A EI+ QV LA F GR ++N+V Sbjct: 122 CSLDCSFCSTGKQGFQRDLSAAEIIGQVWLAIKSYDAFQSGN----------GRVVTNVV 171 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL NFDNV ++++ D +G SKRR+TLSTSG VP + ++ E LA+SL Sbjct: 172 MMGMGEPLLNFDNVVTAMNLMMDDLGYGISKRRVTLSTSGVVPALDKLAEVSEASLAVSL 231 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALN 301 HA +++LRN LVP+NR+YP+ L+ + + Y ++ +T EY ++ GIND P A Sbjct: 232 HAPNDELRNQLVPVNRRYPIAQLLASAQRYIDAQKDKKRVVTIEYTLMAGINDQPEQARE 291 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L +L P KINLIPFNP+P Y + F + + +G+ +RT RG DI AA Sbjct: 292 LALLLADFPCKINLIPFNPFPNSGYERPSGNAVSRFWQVLVDAGFVVTVRTTRGDDIDAA 351 Query: 362 CGQL 365 CGQL Sbjct: 352 CGQL 355 >gi|330817169|ref|YP_004360874.1| hypothetical protein bgla_1g22910 [Burkholderia gladioli BSR3] gi|327369562|gb|AEA60918.1| hypothetical protein bgla_1g22910 [Burkholderia gladioli BSR3] Length = 378 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 148/342 (43%), Positives = 205/342 (59%), Gaps = 16/342 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ DF GM+D+++ +R L I PEI + +S DGTRKWL+ Sbjct: 29 FRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRAMIGMPEIASDHVSSDGTRKWLID- 87 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q RNL+ EI+ Q+ Sbjct: 88 ----VGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTAEIVGQLR 143 Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 +A R LG PG R ++N+VMMGMGEPL N+ V ++ + D Sbjct: 144 MAEFALRESLGRAPGPNG-------KADRVVTNVVMMGMGEPLLNYSAVVPAMRLMLDDN 196 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S+RR+TLSTSG VP + R+G E+ V LA+SLHA ++ LR+ LVP+N+KYPL L+ Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNKKYPLRELMA 256 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 AC+ Y ++ ITFEY ML G+ND+ A L+ + + +P K NLIPFNP+P L Sbjct: 257 ACQRYLTVAPRDFITFEYCMLDGVNDTDAHARELLAVTRDVPCKFNLIPFNPFPESGLLR 316 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 S + I FS+ + +G + +R RG DI AACGQL K Sbjct: 317 SKNERIKQFSQILIDAGVVTTVRKTRGDDIDAACGQLAGAVK 358 >gi|307250523|ref|ZP_07532468.1| hypothetical protein appser4_13040 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307257327|ref|ZP_07539097.1| hypothetical protein appser10_13250 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306857465|gb|EFM89576.1| hypothetical protein appser4_13040 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306864177|gb|EFM96090.1| hypothetical protein appser10_13250 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 393 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 157/363 (43%), Positives = 218/363 (60%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+E+ E ++G R Q+ KWIY G +F MS+I++ +R L Sbjct: 25 EKINLMNLTRQEMRELFAEMG----EKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKL 80 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q I PE+ E+ S DGT KW ++ G +IETVYIPE R TLCVSSQVGC Sbjct: 81 KQIAEIKAPEVSVEQRSSDGTIKWAMQV------GDQQIETVYIPEDDRATLCVSSQVGC 134 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNLT EI+ QV A ++G+F I G+ R I+N+VM Sbjct: 135 ALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GITGV------RPITNVVM 184 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D SKRR+TLST+G VP + + E+I V LAISLH Sbjct: 185 MGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKIDVALAISLH 244 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ ++PIN+KY ++ML+D+ Y +SNA ++T EYV+L +ND A L Sbjct: 245 APNDELRDEIMPINKKYNIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQL 304 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+P Y S + F + + G++ +R RG DI AAC Sbjct: 305 AEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAAC 364 Query: 363 GQL 365 GQL Sbjct: 365 GQL 367 >gi|329123609|ref|ZP_08252169.1| cfr family radical SAM enzyme [Haemophilus aegyptius ATCC 11116] gi|327469808|gb|EGF15273.1| cfr family radical SAM enzyme [Haemophilus aegyptius ATCC 11116] Length = 390 Score = 283 bits (724), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 157/363 (43%), Positives = 216/363 (59%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L Sbjct: 21 KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 76 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC Sbjct: 77 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 130 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F + G+ R I+N+VM Sbjct: 131 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH Sbjct: 181 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 240 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ +VPIN+KY ++ LID+ Y +SNA ++T EYVML +ND A L Sbjct: 241 APNDELRDEIVPINKKYNIKTLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQL 300 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+P Y S I F + + G++ IR RG DI AAC Sbjct: 301 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAAC 360 Query: 363 GQL 365 GQL Sbjct: 361 GQL 363 >gi|319775768|ref|YP_004138256.1| Fe-S-cluster redox enzyme [Haemophilus influenzae F3047] gi|317450359|emb|CBY86575.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae F3047] Length = 383 Score = 283 bits (724), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 157/363 (43%), Positives = 216/363 (59%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L Sbjct: 14 KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 69 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC Sbjct: 70 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F + G+ R I+N+VM Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ +VPIN+KY ++ LID+ Y +SNA ++T EYVML +ND A L Sbjct: 234 APNDELRDEIVPINKKYNIKTLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+P Y S I F + + G++ IR RG DI AAC Sbjct: 294 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAAC 353 Query: 363 GQL 365 GQL Sbjct: 354 GQL 356 >gi|319896694|ref|YP_004134887.1| fe-s-cluster redox enzyme [Haemophilus influenzae F3031] gi|317432196|emb|CBY80548.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae F3031] Length = 383 Score = 283 bits (724), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 157/363 (43%), Positives = 216/363 (59%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L Sbjct: 14 KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 69 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC Sbjct: 70 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F + G+ R I+N+VM Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ +VPIN+KY ++ LID+ Y +SNA ++T EYVML +ND A L Sbjct: 234 APNDELRDEIVPINKKYNIKTLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+P Y S I F + + G++ IR RG DI AAC Sbjct: 294 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAAC 353 Query: 363 GQL 365 GQL Sbjct: 354 GQL 356 >gi|78066584|ref|YP_369353.1| hypothetical protein Bcep18194_A5115 [Burkholderia sp. 383] gi|123770007|sp|Q39FQ7|RLMN_BURS3 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|77967329|gb|ABB08709.1| 23S rRNA m(2)A-2503 methyltransferase [Burkholderia sp. 383] Length = 379 Score = 283 bits (724), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 147/342 (42%), Positives = 207/342 (60%), Gaps = 16/342 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ DF GM+D+++ +R L SI PEI + +S DGTRKWL+ Sbjct: 29 FRAKQLQRWIHQYNAGDFDGMTDLAKSLREKLKGRASIGMPEIASDHVSTDGTRKWLID- 87 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q RNL+ EI+ Q+ Sbjct: 88 ----VGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLR 143 Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 +A R+ LG PG R ++N+VMMGMGEPL N+ V ++ + D Sbjct: 144 MAEFALRASLGRAPGPNG-------KAERVVTNVVMMGMGEPLLNYSAVVPAMRLMLDDN 196 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S+RR+TLSTSG VP + R+G E+ V LA+SLHA ++ LR+ LVP+N+KYPL L+ Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDPLRDELVPLNKKYPLRELMA 256 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 AC+ Y ++ ITFEY ML G+ND+ A L+ + + +P K NLIPFNP+P + Sbjct: 257 ACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRDVPCKFNLIPFNPFPESGLIR 316 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 S + I F++ + +G + +R RG DI AACGQL K Sbjct: 317 SKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDAACGQLAGAVK 358 >gi|145640315|ref|ZP_01795899.1| hypothetical protein CGSHiR3021_09660 [Haemophilus influenzae R3021] gi|145274901|gb|EDK14763.1| hypothetical protein CGSHiR3021_09660 [Haemophilus influenzae 22.4-21] Length = 383 Score = 283 bits (724), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 157/363 (43%), Positives = 216/363 (59%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L Sbjct: 14 KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 69 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC Sbjct: 70 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F + G+ R I+N+VM Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ +VPIN+KY ++MLID+ Y +SNA ++T EYVML +ND A L Sbjct: 234 APNDELRDEIVPINKKYNIQMLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+P Y S I F + + ++ IR RG DI AAC Sbjct: 294 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAAC 353 Query: 363 GQL 365 GQL Sbjct: 354 GQL 356 >gi|145628721|ref|ZP_01784521.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae 22.1-21] gi|144979191|gb|EDJ88877.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae 22.1-21] Length = 383 Score = 283 bits (724), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 157/363 (43%), Positives = 216/363 (59%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L Sbjct: 14 KKINLMDLTRQQMREFFKQLG----EKPFRADQLVKWIYHFGEDNFDKMTNINKKLREKL 69 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC Sbjct: 70 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F + G+ R I+N+VM Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ +VPIN+KY ++ LID+ Y +SNA ++T EYVML +ND A L Sbjct: 234 APNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGIEHAHQL 293 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+P Y S I F + + G++ IR RG DI AAC Sbjct: 294 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAAC 353 Query: 363 GQL 365 GQL Sbjct: 354 GQL 356 >gi|283786133|ref|YP_003365998.1| radical SAM superfamily protein [Citrobacter rodentium ICC168] gi|282949587|emb|CBG89205.1| radical SAM superfamily protein [Citrobacter rodentium ICC168] Length = 388 Score = 283 bits (724), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 161/379 (42%), Positives = 221/379 (58%), Gaps = 23/379 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E ++G R Q+ KW+Y +F M+DI++ +R+ L Sbjct: 21 KINLLDLNRQQMREFFKEMG----EKPFRADQVMKWMYHYCSDNFDEMTDINKVLRNKLK 76 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + G +ETVYIPE R TLCVSSQVGC+ Sbjct: 77 EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 130 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + G R I+N+VMM Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITNVVMM 180 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 181 GMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 240 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L Sbjct: 241 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 360 Query: 364 QLK-SLSKRIPKVPRQEMQ 381 QL + R + R+ MQ Sbjct: 361 QLAGDVIDRTKRTLRKRMQ 379 >gi|332639897|pdb|3RF9|A Chain A, X-Ray Structure Of Rlmn From Escherichia Coli gi|332639898|pdb|3RF9|B Chain B, X-Ray Structure Of Rlmn From Escherichia Coli Length = 404 Score = 283 bits (724), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 161/379 (42%), Positives = 220/379 (58%), Gaps = 23/379 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + G +ETVYIPE R TLCVSSQVGC+ Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 126 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + G R I+N+VMM Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITNVVMM 176 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356 Query: 364 QLK-SLSKRIPKVPRQEMQ 381 QL + R + R+ MQ Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375 >gi|194432102|ref|ZP_03064391.1| radical SAM enzyme, Cfr family [Shigella dysenteriae 1012] gi|194419631|gb|EDX35711.1| radical SAM enzyme, Cfr family [Shigella dysenteriae 1012] gi|332089738|gb|EGI94839.1| hypothetical protein SD15574_2919 [Shigella dysenteriae 155-74] Length = 384 Score = 283 bits (724), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 161/379 (42%), Positives = 220/379 (58%), Gaps = 23/379 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + G +ETVYIPE R TLCVSSQVGC+ Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 126 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + G R I+N+VMM Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITNVVMM 176 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYERSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356 Query: 364 QLK-SLSKRIPKVPRQEMQ 381 QL + R + R+ MQ Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375 >gi|52425971|ref|YP_089108.1| hypothetical protein MS1916 [Mannheimia succiniciproducens MBEL55E] gi|81386653|sp|Q65R87|RLMN_MANSM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|52308023|gb|AAU38523.1| unknown [Mannheimia succiniciproducens MBEL55E] Length = 371 Score = 283 bits (724), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 158/363 (43%), Positives = 216/363 (59%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L Sbjct: 3 EKINLMNLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLRDKL 58 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PEI E+ S DGT KW ++ G +IETVYIPE R TLCVSSQVGC Sbjct: 59 KAVAEIKAPEIAVEQRSADGTIKWAMQV------GDQQIETVYIPEADRATLCVSSQVGC 112 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F G I R I+N+VM Sbjct: 113 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKVIGEF-GVTGI---------RPITNVVM 162 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ + D SKRR+TLSTSG VP + + I V LAISLH Sbjct: 163 MGMGEPLLNVANVVPAMELMLDDFAYGLSKRRVTLSTSGVVPALDNLSGMIDVALAISLH 222 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ +VPIN+KY ++MLID+ Y +SNA ++T EYVML +NDS A L Sbjct: 223 APNDELRDEIVPINKKYNIKMLIDSVNRYLSVSNANHGKVTIEYVMLDHVNDSIEHAHQL 282 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+P Y S + F + + G++ +R RG DI AAC Sbjct: 283 AEVLKNTPCKINLIPWNPFPQAPYGKSSNTRVDKFQKTLMEYGFTVIVRKTRGDDIDAAC 342 Query: 363 GQL 365 GQL Sbjct: 343 GQL 345 >gi|307729247|ref|YP_003906471.1| radical SAM enzyme, Cfr family [Burkholderia sp. CCGE1003] gi|307583782|gb|ADN57180.1| radical SAM enzyme, Cfr family [Burkholderia sp. CCGE1003] Length = 383 Score = 283 bits (724), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 146/339 (43%), Positives = 205/339 (60%), Gaps = 6/339 (1%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ DF GM+D+++ +R L +I P IV + IS DGTRKWL+ Sbjct: 29 FRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRATISMPGIVSDHISADGTRKWLID- 87 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q RNLT EI+ Q+ Sbjct: 88 ----VGNSNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLTTGEIIGQLR 143 Query: 153 LAR-SLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 +A +L R ++N+VMMGMGEPL N+D V ++ + D Sbjct: 144 MAEFALRASLGAAGGRATGGEGKGERVVTNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYG 203 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S+RR+TLSTSG VP + R+G ++ V LA+SLHA S+ LR++LVP+N+KYPL L+ AC+ Sbjct: 204 LSRRRVTLSTSGVVPMMDRLGADLPVALAVSLHAPSDPLRDMLVPLNKKYPLRELMAACQ 263 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 Y ++ ITFEY ML G+NDS A L+ + + +P K NLIPFNP+P + S Sbjct: 264 RYLKVAPRDFITFEYCMLDGVNDSEAQARELLALTRDVPCKFNLIPFNPFPESGLVRSRP 323 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 + I F++ + +G + +R RG DI AACGQL K Sbjct: 324 EQIKRFAQVLVDAGVVTTVRKTRGDDIDAACGQLAGAVK 362 >gi|300920672|ref|ZP_07137083.1| radical SAM enzyme, Cfr family [Escherichia coli MS 115-1] gi|300412353|gb|EFJ95663.1| radical SAM enzyme, Cfr family [Escherichia coli MS 115-1] Length = 384 Score = 283 bits (724), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 161/379 (42%), Positives = 220/379 (58%), Gaps = 23/379 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + G +ETVYIPE R TLCVSSQVGC+ Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 126 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + G R I+N+VMM Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITNVVMM 176 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDDTEHAHQLA 296 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356 Query: 364 QLK-SLSKRIPKVPRQEMQ 381 QL + R + R+ MQ Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375 >gi|332305581|ref|YP_004433432.1| radical SAM enzyme, Cfr family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172910|gb|AEE22164.1| radical SAM enzyme, Cfr family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 380 Score = 283 bits (724), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 156/362 (43%), Positives = 208/362 (57%), Gaps = 21/362 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ R L E IG R Q+ KWIY G+ DF M+++++ +R L Sbjct: 11 KINLLNFNRAGLREYFSSIG----EKPFRADQVMKWIYQAGVSDFDQMTNLNKALREKLK 66 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + PEI ++ + DGT K+ LR G E+ETV+IP+ R TLCVSSQVGC+ Sbjct: 67 MQCEVKAPEIAYQQGATDGTIKFALRLE-----GGQEVETVWIPDADRATLCVSSQVGCA 121 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC T Q RNL+ EI+ QV + +G + S R I+N+VMM Sbjct: 122 LECTFCSTAQQGFNRNLSVAEIIGQVWRVATTIG----------LSNDSAKRPITNVVMM 171 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N NV ++ + D + SKRR+TLSTSG VP + +G++I V LAISLHA Sbjct: 172 GMGEPLLNLKNVVPAMDLMLDDLAFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISLHA 231 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 + LR+ +VPIN+KYP++ + R Y SNA ++T EYVML GINDS A L Sbjct: 232 PDDTLRDEIVPINKKYPIQEFLAGVRRYLAKSNANQGKVTVEYVMLNGINDSTDQAHALA 291 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+L P+KINLIPFNP+PG Y S I F++ + G +R RG DI AACG Sbjct: 292 KVLADTPSKINLIPFNPYPGSPYSRSSNSRIDRFAKVLSSYGLMVVVRKTRGDDIDAACG 351 Query: 364 QL 365 QL Sbjct: 352 QL 353 >gi|170694776|ref|ZP_02885927.1| radical SAM enzyme, Cfr family [Burkholderia graminis C4D1M] gi|170140407|gb|EDT08584.1| radical SAM enzyme, Cfr family [Burkholderia graminis C4D1M] Length = 383 Score = 283 bits (724), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 145/339 (42%), Positives = 204/339 (60%), Gaps = 6/339 (1%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ DF GM+D+++ +R L +I P IV + IS DGTRKWL+ Sbjct: 29 FRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRATISMPGIVSDHISTDGTRKWLIE- 87 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q RNLT EI+ Q+ Sbjct: 88 ----VGNSNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLTTGEIIGQLR 143 Query: 153 LAR-SLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 +A +L R ++N+VMMGM EPL N+D V ++ + D Sbjct: 144 MAEFALRASLGAAGGRAVGGEGKGERVVTNVVMMGMAEPLLNYDAVVPAMRLMLDDNAYG 203 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S+RR+TLSTSG VP + R+G ++ V LA+SLHA S+ LR++LVP+N+KYPL L+ AC+ Sbjct: 204 LSRRRVTLSTSGVVPMMDRLGADLPVALAVSLHAPSDPLRDMLVPLNKKYPLRELMAACQ 263 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 Y ++ ITFEY ML G+NDS A L+ + + +P K NLIPFNP+P + S Sbjct: 264 RYLKVAPRDFITFEYCMLDGVNDSEAQARELLALTRDVPCKFNLIPFNPFPESGLVRSKS 323 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 + I F++ + +G + +R RG DI AACGQL K Sbjct: 324 EQIKRFAQVLMDAGVVTTVRKTRGDDIDAACGQLAGAVK 362 >gi|325526956|gb|EGD04412.1| radical SAM superfamily protein [Burkholderia sp. TJI49] Length = 379 Score = 283 bits (724), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 146/342 (42%), Positives = 207/342 (60%), Gaps = 16/342 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ DF GM+D+++ +R L +I PEI + +S DGTRKWL+ Sbjct: 29 FRAKQLQRWIHQYNAGDFDGMTDLAKSLREKLKGRATISMPEIASDHVSADGTRKWLID- 87 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q RNL+ EI+ Q+ Sbjct: 88 ----VGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLR 143 Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 +A R+ LG PG R ++N+VMMGMGEPL N+ V ++ + D Sbjct: 144 MAEFALRASLGRAPGPNG-------KAERVVTNVVMMGMGEPLLNYSAVVPAMRLMLDDN 196 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S+RR+TLSTSG VP + R+G E+ V LA+SLHA ++ LR+ LVP+N+KYPL L+ Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNKKYPLRELMA 256 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 AC+ Y ++ ITFEY ML G+ND+ A L+ + + +P K NLIPFNP+P + Sbjct: 257 ACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRDVPCKFNLIPFNPFPESGLIR 316 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 S + I F++ + +G + +R RG DI AACGQL K Sbjct: 317 SKPEQIKRFAQILIDAGVVTTVRKTRGDDIDAACGQLAGAVK 358 >gi|170767629|ref|ZP_02902082.1| radical SAM enzyme, Cfr family [Escherichia albertii TW07627] gi|170123963|gb|EDS92894.1| radical SAM enzyme, Cfr family [Escherichia albertii TW07627] Length = 384 Score = 283 bits (723), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 161/379 (42%), Positives = 220/379 (58%), Gaps = 23/379 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + G +ETVYIPE R TLCVSSQVGC+ Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 126 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + G R I+N+VMM Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITNVVMM 176 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356 Query: 364 QLK-SLSKRIPKVPRQEMQ 381 QL + R + R+ MQ Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375 >gi|32035054|ref|ZP_00135120.1| COG0820: Predicted Fe-S-cluster redox enzyme [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208740|ref|YP_001053965.1| hypothetical protein APL_1274 [Actinobacillus pleuropneumoniae L20] gi|205829705|sp|A3N1S4|RLMN_ACTP2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|126097532|gb|ABN74360.1| hypothetical protein APL_1274 [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 393 Score = 283 bits (723), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 157/363 (43%), Positives = 218/363 (60%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+E+ E ++G R Q+ KWIY G +F MS+I++ +R L Sbjct: 25 EKINLMNLTRKEMRELFAEMG----EKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKL 80 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q I PE+ E+ S DGT KW ++ G +IETVYIPE R TLCVSSQVGC Sbjct: 81 KQIAEIKAPEVSVEQRSSDGTIKWAMQV------GDQQIETVYIPEDDRATLCVSSQVGC 134 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNLT EI+ QV A ++G+F I G+ R I+N+VM Sbjct: 135 ALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GITGV------RPITNVVM 184 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D SKRR+TLST+G VP + + E+I V LAISLH Sbjct: 185 MGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKIDVALAISLH 244 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ ++PIN+KY ++ML+D+ Y +SNA ++T EYV+L +ND A L Sbjct: 245 APNDELRDEIMPINKKYNIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQL 304 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+P Y S + F + + G++ +R RG DI AAC Sbjct: 305 AEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAAC 364 Query: 363 GQL 365 GQL Sbjct: 365 GQL 367 >gi|165976692|ref|YP_001652285.1| hypothetical protein APJL_1285 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303250645|ref|ZP_07336842.1| hypothetical protein APP6_0233 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252906|ref|ZP_07534795.1| hypothetical protein appser6_14180 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307261750|ref|ZP_07543416.1| hypothetical protein appser12_13090 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307263937|ref|ZP_07545541.1| hypothetical protein appser13_13460 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|205829706|sp|B0BQK6|RLMN_ACTPJ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|165876793|gb|ABY69841.1| hypothetical protein APJL_1285 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302650633|gb|EFL80792.1| hypothetical protein APP6_0233 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859695|gb|EFM91719.1| hypothetical protein appser6_14180 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306868568|gb|EFN00379.1| hypothetical protein appser12_13090 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306870802|gb|EFN02542.1| hypothetical protein appser13_13460 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 393 Score = 283 bits (723), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 156/363 (42%), Positives = 218/363 (60%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+E+ E ++G R Q+ KWIY G +F MS+I++ +R L Sbjct: 25 EKINLMNLTRQEMRELFAEMG----EKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKL 80 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q I PE+ E+ S DGT KW ++ G +IETVYIPE R TLCVSSQVGC Sbjct: 81 KQIAEIKAPEVSVEQRSSDGTIKWAMQV------GDQQIETVYIPEDDRATLCVSSQVGC 134 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNLT EI+ QV A ++G+F + G+ R I+N+VM Sbjct: 135 ALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 184 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D SKRR+TLST+G VP + + E+I V LAISLH Sbjct: 185 MGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKIDVALAISLH 244 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ ++PIN+KY ++ML+D+ Y +SNA ++T EYV+L +ND A L Sbjct: 245 APNDELRDEIMPINKKYNIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQL 304 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+P Y S + F + + G++ +R RG DI AAC Sbjct: 305 AEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAAC 364 Query: 363 GQL 365 GQL Sbjct: 365 GQL 367 >gi|32491320|ref|NP_871574.1| hypothetical protein WGLp571 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|81741588|sp|Q8D1Y5|RLMN_WIGBR RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|25166527|dbj|BAC24717.1| yfgB [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 382 Score = 283 bits (723), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 156/363 (42%), Positives = 218/363 (60%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +++G REEL + +KIG + R QI KWIY R D M+D S+ +++ L Sbjct: 24 KKINILGKTREELYDFFIKIG----EEKFRAEQIMKWIYKRYCDDVSLMTDFSKNLKNKL 79 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I + +I E IS DGT KW+L+ + IETVYIPE +R TLC+SSQ+GC Sbjct: 80 KNIIKIDHLDIESENISQDGTIKWVLKINDQ------NIETVYIPEINRATLCISSQIGC 133 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNL + EI+ Q+ A ++ D + +KI+NIVM Sbjct: 134 ALNCKFCATSYQGFNRNLNSYEIISQIWYAMKIINDRNNFK----------LKKITNIVM 183 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N N+ ++ I D+ G SKRRIT+ST+G P I ++G+ I V LAISLH Sbjct: 184 MGMGEPLLNLKNLVPAIKIILDNYGFGLSKRRITISTAGISPVIKKLGKLIDVKLAISLH 243 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++ +RN ++PIN+KY ++ ++ + + Y S A +I+ EY+ML IND A L Sbjct: 244 APNDIIRNKIMPINKKYNIKSILLSAKKYISTSKANKGKISIEYIMLNEINDKTEHAYQL 303 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 I LK IP KINLIP+NP+P +Y CS+ I F + + + G ++ IR RG+DI AAC Sbjct: 304 INCLKNIPCKINLIPWNPFPYVKYKCSNFNKINNFYKILIKHGITTTIRKQRGIDIKAAC 363 Query: 363 GQL 365 GQL Sbjct: 364 GQL 366 >gi|16130442|ref|NP_417012.1| 23S rRNA m(2)A2503 methyltransferase, SAM-dependen [Escherichia coli str. K-12 substr. MG1655] gi|74313043|ref|YP_311462.1| ribosomal RNA large subunit methyltransferase N [Shigella sonnei Ss046] gi|82544966|ref|YP_408913.1| ribosomal RNA large subunit methyltransferase N [Shigella boydii Sb227] gi|82777902|ref|YP_404251.1| hypothetical protein SDY_2713 [Shigella dysenteriae Sd197] gi|89109323|ref|AP_003103.1| hypothetical protein [Escherichia coli str. K-12 substr. W3110] gi|91211843|ref|YP_541829.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli UTI89] gi|110642682|ref|YP_670412.1| hypothetical protein ECP_2522 [Escherichia coli 536] gi|117624746|ref|YP_853659.1| hypothetical protein APECO1_4007 [Escherichia coli APEC O1] gi|157157838|ref|YP_001463839.1| hypothetical protein EcE24377A_2801 [Escherichia coli E24377A] gi|170019200|ref|YP_001724154.1| hypothetical protein EcolC_1160 [Escherichia coli ATCC 8739] gi|170082127|ref|YP_001731447.1| hypothetical protein ECDH10B_2683 [Escherichia coli str. K-12 substr. DH10B] gi|170683806|ref|YP_001744705.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli SMS-3-5] gi|187731368|ref|YP_001881308.1| ribosomal RNA large subunit methyltransferase N [Shigella boydii CDC 3083-94] gi|188491812|ref|ZP_02999082.1| radical SAM enzyme, Cfr family [Escherichia coli 53638] gi|191167679|ref|ZP_03029488.1| radical SAM enzyme, Cfr family [Escherichia coli B7A] gi|191172618|ref|ZP_03034157.1| radical SAM enzyme, Cfr family [Escherichia coli F11] gi|193064109|ref|ZP_03045194.1| radical SAM enzyme, Cfr family [Escherichia coli E22] gi|194427328|ref|ZP_03059878.1| radical SAM enzyme, Cfr family [Escherichia coli B171] gi|194437563|ref|ZP_03069659.1| radical SAM enzyme, Cfr family [Escherichia coli 101-1] gi|209919994|ref|YP_002294078.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli SE11] gi|215487867|ref|YP_002330298.1| hypothetical protein E2348C_2800 [Escherichia coli O127:H6 str. E2348/69] gi|218555042|ref|YP_002387955.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli IAI1] gi|218559443|ref|YP_002392356.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli S88] gi|218690637|ref|YP_002398849.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli ED1a] gi|218696144|ref|YP_002403811.1| hypothetical protein EC55989_2802 [Escherichia coli 55989] gi|218701027|ref|YP_002408656.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli IAI39] gi|237705027|ref|ZP_04535508.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp. 3_2_53FAA] gi|238901682|ref|YP_002927478.1| putative enzyme [Escherichia coli BW2952] gi|253772589|ref|YP_003035420.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162491|ref|YP_003045599.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli B str. REL606] gi|256017335|ref|ZP_05431200.1| hypothetical protein ShiD9_00370 [Shigella sp. D9] gi|256021797|ref|ZP_05435662.1| hypothetical protein E4_00375 [Escherichia sp. 4_1_40B] gi|260845147|ref|YP_003222925.1| putative enzyme [Escherichia coli O103:H2 str. 12009] gi|260856611|ref|YP_003230502.1| putative enzyme [Escherichia coli O26:H11 str. 11368] gi|293410931|ref|ZP_06654507.1| cfr family radical SAM enzyme [Escherichia coli B354] gi|293446870|ref|ZP_06663292.1| cfr family radical SAM enzyme [Escherichia coli B088] gi|300817713|ref|ZP_07097928.1| radical SAM enzyme, Cfr family [Escherichia coli MS 107-1] gi|300820813|ref|ZP_07100963.1| radical SAM enzyme, Cfr family [Escherichia coli MS 119-7] gi|300904309|ref|ZP_07122166.1| radical SAM enzyme, Cfr family [Escherichia coli MS 84-1] gi|300927120|ref|ZP_07142868.1| radical SAM enzyme, Cfr family [Escherichia coli MS 182-1] gi|300930157|ref|ZP_07145578.1| radical SAM enzyme, Cfr family [Escherichia coli MS 187-1] gi|300940232|ref|ZP_07154830.1| radical SAM enzyme, Cfr family [Escherichia coli MS 21-1] gi|300951778|ref|ZP_07165593.1| radical SAM enzyme, Cfr family [Escherichia coli MS 116-1] gi|300958853|ref|ZP_07170961.1| radical SAM enzyme, Cfr family [Escherichia coli MS 175-1] gi|300998073|ref|ZP_07181933.1| radical SAM enzyme, Cfr family [Escherichia coli MS 200-1] gi|301022377|ref|ZP_07186264.1| radical SAM enzyme, Cfr family [Escherichia coli MS 196-1] gi|301024749|ref|ZP_07188389.1| radical SAM enzyme, Cfr family [Escherichia coli MS 69-1] gi|301302874|ref|ZP_07209002.1| radical SAM enzyme, Cfr family [Escherichia coli MS 124-1] gi|301330392|ref|ZP_07223034.1| radical SAM enzyme, Cfr family [Escherichia coli MS 78-1] gi|301648272|ref|ZP_07248015.1| radical SAM enzyme, Cfr family [Escherichia coli MS 146-1] gi|306814413|ref|ZP_07448575.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli NC101] gi|307139152|ref|ZP_07498508.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli H736] gi|307312488|ref|ZP_07592121.1| radical SAM enzyme, Cfr family [Escherichia coli W] gi|309784732|ref|ZP_07679365.1| UPF0063 protein yfgB [Shigella dysenteriae 1617] gi|309794436|ref|ZP_07688859.1| radical SAM enzyme, Cfr family [Escherichia coli MS 145-7] gi|312965433|ref|ZP_07779665.1| UPF0063 protein yfgB [Escherichia coli 2362-75] gi|331643137|ref|ZP_08344272.1| radical SAM enzyme, Cfr family [Escherichia coli H736] gi|331648214|ref|ZP_08349304.1| radical SAM enzyme, Cfr family [Escherichia coli M605] gi|331653945|ref|ZP_08354946.1| radical SAM enzyme, Cfr family [Escherichia coli M718] gi|331658662|ref|ZP_08359606.1| radical SAM enzyme, Cfr family [Escherichia coli TA206] gi|331664080|ref|ZP_08364990.1| radical SAM enzyme, Cfr family [Escherichia coli TA143] gi|331669263|ref|ZP_08370111.1| radical SAM enzyme, Cfr family [Escherichia coli TA271] gi|331673972|ref|ZP_08374735.1| radical SAM enzyme, Cfr family [Escherichia coli TA280] gi|331678508|ref|ZP_08379183.1| radical SAM enzyme, Cfr family [Escherichia coli H591] gi|331684165|ref|ZP_08384761.1| radical SAM enzyme, Cfr family [Escherichia coli H299] gi|332278330|ref|ZP_08390743.1| ribosomal RNA large subunit methyltransferase N [Shigella sp. D9] gi|549552|sp|P36979|RLMN_ECOLI RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123084401|sp|Q1R8L6|RLMN_ECOUT RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123147826|sp|Q0TEW8|RLMN_ECOL5 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123728531|sp|Q32D45|RLMN_SHIDS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123755559|sp|Q31XX3|RLMN_SHIBS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123773477|sp|Q3YZ35|RLMN_SHISS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829749|sp|A7ZPW0|RLMN_ECO24 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829750|sp|B1XAZ2|RLMN_ECODH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829752|sp|A1AE55|RLMN_ECOK1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829753|sp|B1IWE4|RLMN_ECOLC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829754|sp|B1LNH2|RLMN_ECOSM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829888|sp|B2TXU2|RLMN_SHIB3 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807172|sp|B7UGW3|RLMN_ECO27 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807173|sp|B7MI02|RLMN_ECO45 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807174|sp|B7LDA9|RLMN_ECO55 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807176|sp|B7NRG7|RLMN_ECO7I RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807177|sp|B7N304|RLMN_ECO81 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807178|sp|B7M7M1|RLMN_ECO8A RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807180|sp|B6I589|RLMN_ECOSE RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|259491986|sp|C4ZX92|RLMN_ECOBW RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|493519|gb|AAA21359.1| unknown [Escherichia coli] gi|1788865|gb|AAC75570.1| 23S rRNA m(2)A2503 methyltransferase, SAM-dependen [Escherichia coli str. K-12 substr. MG1655] gi|1799916|dbj|BAA16404.1| hypothetical protein [Escherichia coli str. K12 substr. W3110] gi|73856520|gb|AAZ89227.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|81242050|gb|ABB62760.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|81246377|gb|ABB67085.1| conserved hypothetical protein [Shigella boydii Sb227] gi|91073417|gb|ABE08298.1| hypothetical protein UTI89_C2838 [Escherichia coli UTI89] gi|110344274|gb|ABG70511.1| hypothetical protein YfgB (putative Fe-S-cluster redox enzyme) [Escherichia coli 536] gi|115513870|gb|ABJ01945.1| putative Fe-S-cluster redox enzyme [Escherichia coli APEC O1] gi|157079868|gb|ABV19576.1| radical SAM enzyme, Cfr family [Escherichia coli E24377A] gi|169754128|gb|ACA76827.1| radical SAM enzyme, Cfr family [Escherichia coli ATCC 8739] gi|169889962|gb|ACB03669.1| predicted enzyme [Escherichia coli str. K-12 substr. DH10B] gi|170521524|gb|ACB19702.1| radical SAM enzyme, Cfr family [Escherichia coli SMS-3-5] gi|187428360|gb|ACD07634.1| radical SAM enzyme, Cfr family [Shigella boydii CDC 3083-94] gi|188487011|gb|EDU62114.1| radical SAM enzyme, Cfr family [Escherichia coli 53638] gi|190902278|gb|EDV62018.1| radical SAM enzyme, Cfr family [Escherichia coli B7A] gi|190907091|gb|EDV66691.1| radical SAM enzyme, Cfr family [Escherichia coli F11] gi|192929344|gb|EDV82953.1| radical SAM enzyme, Cfr family [Escherichia coli E22] gi|194414649|gb|EDX30921.1| radical SAM enzyme, Cfr family [Escherichia coli B171] gi|194423369|gb|EDX39360.1| radical SAM enzyme, Cfr family [Escherichia coli 101-1] gi|209913253|dbj|BAG78327.1| conserved hypothetical protein [Escherichia coli SE11] gi|215265939|emb|CAS10348.1| predicted enzyme [Escherichia coli O127:H6 str. E2348/69] gi|218352876|emb|CAU98675.1| putative Fe-S containing enzyme [Escherichia coli 55989] gi|218361810|emb|CAQ99409.1| putative Fe-S containing enzyme [Escherichia coli IAI1] gi|218366212|emb|CAR03960.1| putative Fe-S containing enzyme [Escherichia coli S88] gi|218371013|emb|CAR18841.1| putative Fe-S containing enzyme [Escherichia coli IAI39] gi|218428201|emb|CAV17847.1| putative Fe-S containing enzyme [Escherichia coli ED1a] gi|222034228|emb|CAP76969.1| UPF0063 protein yfgB [Escherichia coli LF82] gi|226901393|gb|EEH87652.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp. 3_2_53FAA] gi|238862352|gb|ACR64350.1| predicted enzyme [Escherichia coli BW2952] gi|242378115|emb|CAQ32888.1| 23S rRNA m[2]A2503 methyltransferase [Escherichia coli BL21(DE3)] gi|253323633|gb|ACT28235.1| radical SAM enzyme, Cfr family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974392|gb|ACT40063.1| predicted enzyme [Escherichia coli B str. REL606] gi|253978559|gb|ACT44229.1| predicted enzyme [Escherichia coli BL21(DE3)] gi|257755260|dbj|BAI26762.1| predicted enzyme [Escherichia coli O26:H11 str. 11368] gi|257760294|dbj|BAI31791.1| predicted enzyme [Escherichia coli O103:H2 str. 12009] gi|260448403|gb|ACX38825.1| radical SAM enzyme, Cfr family [Escherichia coli DH1] gi|281179571|dbj|BAI55901.1| conserved hypothetical protein [Escherichia coli SE15] gi|284922467|emb|CBG35554.1| radical SAM superfamily protein [Escherichia coli 042] gi|291323700|gb|EFE63128.1| cfr family radical SAM enzyme [Escherichia coli B088] gi|291471399|gb|EFF13883.1| cfr family radical SAM enzyme [Escherichia coli B354] gi|294492482|gb|ADE91238.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli IHE3034] gi|299881276|gb|EFI89487.1| radical SAM enzyme, Cfr family [Escherichia coli MS 196-1] gi|300304052|gb|EFJ58572.1| radical SAM enzyme, Cfr family [Escherichia coli MS 200-1] gi|300314505|gb|EFJ64289.1| radical SAM enzyme, Cfr family [Escherichia coli MS 175-1] gi|300396418|gb|EFJ79956.1| radical SAM enzyme, Cfr family [Escherichia coli MS 69-1] gi|300403741|gb|EFJ87279.1| radical SAM enzyme, Cfr family [Escherichia coli MS 84-1] gi|300416890|gb|EFK00201.1| radical SAM enzyme, Cfr family [Escherichia coli MS 182-1] gi|300448975|gb|EFK12595.1| radical SAM enzyme, Cfr family [Escherichia coli MS 116-1] gi|300454928|gb|EFK18421.1| radical SAM enzyme, Cfr family [Escherichia coli MS 21-1] gi|300461963|gb|EFK25456.1| radical SAM enzyme, Cfr family [Escherichia coli MS 187-1] gi|300526566|gb|EFK47635.1| radical SAM enzyme, Cfr family [Escherichia coli MS 119-7] gi|300529701|gb|EFK50763.1| radical SAM enzyme, Cfr family [Escherichia coli MS 107-1] gi|300841809|gb|EFK69569.1| radical SAM enzyme, Cfr family [Escherichia coli MS 124-1] gi|300843621|gb|EFK71381.1| radical SAM enzyme, Cfr family [Escherichia coli MS 78-1] gi|301073659|gb|EFK88465.1| radical SAM enzyme, Cfr family [Escherichia coli MS 146-1] gi|305851807|gb|EFM52259.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli NC101] gi|306907411|gb|EFN37915.1| radical SAM enzyme, Cfr family [Escherichia coli W] gi|307625927|gb|ADN70231.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli UM146] gi|308121892|gb|EFO59154.1| radical SAM enzyme, Cfr family [Escherichia coli MS 145-7] gi|308927102|gb|EFP72576.1| UPF0063 protein yfgB [Shigella dysenteriae 1617] gi|309702849|emb|CBJ02180.1| radical SAM superfamily protein [Escherichia coli ETEC H10407] gi|312289853|gb|EFR17741.1| UPF0063 protein yfgB [Escherichia coli 2362-75] gi|312947094|gb|ADR27921.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli O83:H1 str. NRG 857C] gi|315061836|gb|ADT76163.1| radical SAM protein [Escherichia coli W] gi|315137141|dbj|BAJ44300.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli DH1] gi|315256537|gb|EFU36505.1| radical SAM enzyme, Cfr family [Escherichia coli MS 85-1] gi|315288069|gb|EFU47469.1| radical SAM enzyme, Cfr family [Escherichia coli MS 110-3] gi|315300476|gb|EFU59705.1| radical SAM enzyme, Cfr family [Escherichia coli MS 16-3] gi|315615776|gb|EFU96408.1| UPF0063 protein yfgB [Escherichia coli 3431] gi|320175080|gb|EFW50193.1| Ribosomal RNA large subunit methyltransferase N [Shigella dysenteriae CDC 74-1112] gi|320180507|gb|EFW55438.1| Ribosomal RNA large subunit methyltransferase N [Shigella boydii ATCC 9905] gi|320185217|gb|EFW59997.1| Ribosomal RNA large subunit methyltransferase N [Shigella flexneri CDC 796-83] gi|320196354|gb|EFW70978.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli WV_060327] gi|320200081|gb|EFW74670.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli EC4100B] gi|323156172|gb|EFZ42331.1| hypothetical protein ECEPECA14_1949 [Escherichia coli EPECa14] gi|323159387|gb|EFZ45372.1| hypothetical protein ECE128010_4438 [Escherichia coli E128010] gi|323169039|gb|EFZ54716.1| hypothetical protein SS53G_0580 [Shigella sonnei 53G] gi|323170210|gb|EFZ55863.1| hypothetical protein ECLT68_5098 [Escherichia coli LT-68] gi|323184422|gb|EFZ69797.1| hypothetical protein ECOK1357_2143 [Escherichia coli 1357] gi|323188365|gb|EFZ73657.1| hypothetical protein ECRN5871_3471 [Escherichia coli RN587/1] gi|323377583|gb|ADX49851.1| radical SAM enzyme, Cfr family [Escherichia coli KO11] gi|323936410|gb|EGB32700.1| cfr family protein radical SAM enzyme [Escherichia coli E1520] gi|323941221|gb|EGB37406.1| cfr family protein radical SAM enzyme [Escherichia coli E482] gi|323944739|gb|EGB40806.1| cfr family protein radical SAM enzyme [Escherichia coli H120] gi|323949177|gb|EGB45068.1| cfr family protein radical SAM enzyme [Escherichia coli H252] gi|323955758|gb|EGB51516.1| cfr family protein radical SAM enzyme [Escherichia coli H263] gi|323961333|gb|EGB56945.1| cfr family protein radical SAM enzyme [Escherichia coli H489] gi|323967965|gb|EGB63377.1| cfr family protein radical SAM enzyme [Escherichia coli M863] gi|323971070|gb|EGB66318.1| cfr family protein radical SAM enzyme [Escherichia coli TA007] gi|323977300|gb|EGB72386.1| cfr family protein radical SAM enzyme [Escherichia coli TW10509] gi|324008525|gb|EGB77744.1| radical SAM enzyme, Cfr family [Escherichia coli MS 57-2] gi|324011226|gb|EGB80445.1| radical SAM enzyme, Cfr family [Escherichia coli MS 60-1] gi|324020077|gb|EGB89296.1| radical SAM enzyme, Cfr family [Escherichia coli MS 117-3] gi|324118139|gb|EGC12036.1| cfr family protein radical SAM enzyme [Escherichia coli E1167] gi|327252224|gb|EGE63896.1| hypothetical protein ECSTEC7V_3072 [Escherichia coli STEC_7v] gi|330912292|gb|EGH40802.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli AA86] gi|331039935|gb|EGI12155.1| radical SAM enzyme, Cfr family [Escherichia coli H736] gi|331043074|gb|EGI15214.1| radical SAM enzyme, Cfr family [Escherichia coli M605] gi|331048794|gb|EGI20870.1| radical SAM enzyme, Cfr family [Escherichia coli M718] gi|331054327|gb|EGI26354.1| radical SAM enzyme, Cfr family [Escherichia coli TA206] gi|331059879|gb|EGI31856.1| radical SAM enzyme, Cfr family [Escherichia coli TA143] gi|331064457|gb|EGI36368.1| radical SAM enzyme, Cfr family [Escherichia coli TA271] gi|331069245|gb|EGI40637.1| radical SAM enzyme, Cfr family [Escherichia coli TA280] gi|331074968|gb|EGI46288.1| radical SAM enzyme, Cfr family [Escherichia coli H591] gi|331079117|gb|EGI50319.1| radical SAM enzyme, Cfr family [Escherichia coli H299] gi|332092803|gb|EGI97872.1| hypothetical protein SB359474_2930 [Shigella boydii 3594-74] gi|332100682|gb|EGJ04028.1| ribosomal RNA large subunit methyltransferase N [Shigella sp. D9] gi|332344389|gb|AEE57723.1| conserved hypothetical protein [Escherichia coli UMNK88] Length = 384 Score = 283 bits (723), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 161/379 (42%), Positives = 220/379 (58%), Gaps = 23/379 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + G +ETVYIPE R TLCVSSQVGC+ Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 126 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + G R I+N+VMM Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITNVVMM 176 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356 Query: 364 QLK-SLSKRIPKVPRQEMQ 381 QL + R + R+ MQ Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375 >gi|218548046|ref|YP_002381837.1| ribosomal RNA large subunit methyltransferase N [Escherichia fergusonii ATCC 35469] gi|254807182|sp|B7LKC1|RLMN_ESCF3 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|218355587|emb|CAQ88198.1| putative Fe-S containing enzyme [Escherichia fergusonii ATCC 35469] gi|324113011|gb|EGC06987.1| cfr family protein radical SAM enzyme [Escherichia fergusonii B253] gi|325496450|gb|EGC94309.1| ribosomal RNA large subunit methyltransferase N [Escherichia fergusonii ECD227] Length = 384 Score = 283 bits (723), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 161/379 (42%), Positives = 220/379 (58%), Gaps = 23/379 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + G +ETVYIPE R TLCVSSQVGC+ Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 126 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + G R I+N+VMM Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITNVVMM 176 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356 Query: 364 QLK-SLSKRIPKVPRQEMQ 381 QL + R + R+ MQ Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375 >gi|307132063|ref|YP_003884079.1| 23S rRNA m(2)A2503 methyltransferase [Dickeya dadantii 3937] gi|306529592|gb|ADM99522.1| 23S rRNA m(2)A2503 methyltransferase [Dickeya dadantii 3937] Length = 392 Score = 283 bits (723), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 161/383 (42%), Positives = 220/383 (57%), Gaps = 23/383 (6%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 N +K +L+ R+++ ++G R Q+ KW+Y DF M+DI++ +R Sbjct: 21 NSNEKINLLDFNRQQMRAFFAELG----EKPFRADQVMKWMYHYCCDDFNQMTDINKVLR 76 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L I PE+VDE+ S DGT KW + + +ETVYIPE+ R TLCVSSQ Sbjct: 77 GKLQAIAEIRAPEVVDEQRSSDGTIKWAILVDGQ------RVETVYIPEEDRATLCVSSQ 130 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC+L C FC T Q RNL EI+ QV A ++G + G R I+N Sbjct: 131 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----AAKVTGQ------RPITN 180 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 +VMMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAI Sbjct: 181 VVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAI 240 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299 SLHA ++++RN ++PIN+KY +E + A R Y SNA R+T EYVML IND A Sbjct: 241 SLHAPTDEIRNEIMPINKKYDIETFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHA 300 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI Sbjct: 301 HQLAECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDID 360 Query: 360 AACGQLK-SLSKRIPKVPRQEMQ 381 AACGQL + R + +++MQ Sbjct: 361 AACGQLAGEVVDRTKRTLKKKMQ 383 >gi|303257588|ref|ZP_07343600.1| radical SAM enzyme, Cfr family [Burkholderiales bacterium 1_1_47] gi|302859558|gb|EFL82637.1| radical SAM enzyme, Cfr family [Burkholderiales bacterium 1_1_47] Length = 384 Score = 282 bits (722), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 151/335 (45%), Positives = 206/335 (61%), Gaps = 16/335 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ RG RDF M+D+++ R L + I PEI+ +K + DGTRKWLL Sbjct: 27 FRAKQLERWIHRRGARDFSEMTDLAKSFRAKLEKVAEIRGPEIIRDKTAADGTRKWLLD- 85 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +E VYIP+ RGTLCVSSQ GC++ C FC TG Q RNL A EI+ Q+ Sbjct: 86 ----VGSGNAVEMVYIPQDGRGTLCVSSQAGCAMNCLFCSTGKQGFNRNLKASEIIGQLR 141 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A L G D R ISN+VMMGMGEPL N D V SL + D Sbjct: 142 HAEHTLRKDLGITD-------ENERVISNVVMMGMGEPLQNLDAVIPSLKLMLDDNAYGL 194 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+T+STSG V + ++ E+ V LA+SLHA +N+LR+ ++P+NRK+PLE L+ AC+ Sbjct: 195 SRRRVTVSTSGLVRQMDKLAEQCPVALAVSLHAPNNELRDKIMPVNRKHPLEQLLAACKR 254 Query: 273 YPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 Y L +A R ITFEY+++ G+NDS A LI +++ IP K NLIPFNP+PG S Sbjct: 255 Y--LEHAPRDFITFEYILIGGVNDSLAQAKELITLVQDIPCKFNLIPFNPFPGSGLERSK 312 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +++ F++ + +G + +R RG DI AACGQL Sbjct: 313 PEEVKAFADRLNGAGIVTTVRKVRGDDIDAACGQL 347 >gi|312796090|ref|YP_004029012.1| radical SAM protein [Burkholderia rhizoxinica HKI 454] gi|312167865|emb|CBW74868.1| Radical SAM family enzyme [Burkholderia rhizoxinica HKI 454] Length = 391 Score = 282 bits (722), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 149/333 (44%), Positives = 201/333 (60%), Gaps = 12/333 (3%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ G+ DF M+D+++ +R L SI +P ++ + S DGTRKWLL Sbjct: 41 FRARQLQRWIHHGGVSDFDAMTDLAKSLRDKLKTRASIRHPAVLQDHTSADGTRKWLLD- 99 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETVYIPE+ RGTLCVSSQ GC++ C FC TG Q RNL EI+ Q+ Sbjct: 100 ----VGEGNAVETVYIPEQGRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLGVGEIIGQLW 155 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 +A L G + P R I+N+VMMGMGEPL NFD V ++ + D Sbjct: 156 MAEFAL------RAARGGLAPGE-RVITNVVMMGMGEPLLNFDAVVPAMRLMLDDHAYGL 208 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+TLSTSG VP I R+ E+ V LA+SLHA ++ LR+ LVP+NRKYPL L+ AC Sbjct: 209 SRRRVTLSTSGVVPMIDRLAAELPVALAVSLHAPNDALRDELVPLNRKYPLAELMAACNR 268 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y ++ ITFEY ML G+ND A L+ + + +P K NLIPFNP+P L S + Sbjct: 269 YLRVAPRDFITFEYCMLDGVNDRDEHARQLLALTRDVPCKFNLIPFNPFPESGLLRSHPE 328 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F++ + +G + +R RG DI AACGQL Sbjct: 329 RIKQFAQILIDAGVVTTVRRTRGDDIDAACGQL 361 >gi|301169067|emb|CBW28664.1| predicted enzyme [Haemophilus influenzae 10810] Length = 383 Score = 282 bits (722), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 157/363 (43%), Positives = 215/363 (59%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L Sbjct: 14 KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 69 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC Sbjct: 70 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F I G+ R I+N+VM Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GITGV------RPITNVVM 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ +VPIN+KY ++ LID+ Y +SNA ++T EYVML +ND A L Sbjct: 234 APNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++L P KINLIP+NP+P Y S I F + + G++ IR RG DI AAC Sbjct: 294 AEVLNNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAAC 353 Query: 363 GQL 365 GQL Sbjct: 354 GQL 356 >gi|241662752|ref|YP_002981112.1| radical SAM enzyme, Cfr family [Ralstonia pickettii 12D] gi|240864779|gb|ACS62440.1| radical SAM enzyme, Cfr family [Ralstonia pickettii 12D] Length = 383 Score = 282 bits (722), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 146/337 (43%), Positives = 207/337 (61%), Gaps = 20/337 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ G DF M+D+++ +R L +I P ++ + +S DGTRKWL+ Sbjct: 27 FRAKQLQRWIHQSGASDFGEMTDLAKSLREKLATRANIQAPAVITDHLSSDGTRKWLVD- 85 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETVYIPE++RGTLCVSSQ GC++ C FC TG Q RNL+ EI+ Q+ Sbjct: 86 ----VGQGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIIGQLW 141 Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 +A R LG P + R I+N+VMMGMGEPL N+D V +L++ D Sbjct: 142 MAEFAMRKQLGRGPKDD-----------RVITNVVMMGMGEPLLNYDAVVPALALMLDDN 190 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S+RR+T+STSG VP + R+ ++ V LA+SLHA ++ LR++LVP+N+KYPL L+ Sbjct: 191 AYGLSRRRVTVSTSGVVPMMDRLARDVPVALAVSLHASNDALRDVLVPLNKKYPLAELMA 250 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 ACR Y + ITFEY ML G+ND+ A L++++ +P K NLIPFNP+P Sbjct: 251 ACRRYLEFAPRDFITFEYCMLDGVNDTVEHARELLRVVADVPCKFNLIPFNPFPESGLKR 310 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 S+ + I FS+ + +G + IR RG DI AACGQL Sbjct: 311 SNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDAACGQL 347 >gi|113461341|ref|YP_719410.1| ribosomal RNA large subunit methyltransferase N [Haemophilus somnus 129PT] gi|112823384|gb|ABI25473.1| 23S rRNA m(2)A-2503 methyltransferase [Haemophilus somnus 129PT] Length = 365 Score = 282 bits (722), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 153/335 (45%), Positives = 204/335 (60%), Gaps = 18/335 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ KWIY G +F M++I++++R L I PEI E+ S DGT KW ++ Sbjct: 20 FRADQLVKWIYHFGEDNFDHMTNINKKLREKLKTVAEIKAPEIAVEQRSADGTIKWAMQV 79 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G ++ETVYIPE R TLCVSSQVGC+L C+FC T Q RNLT EI+ QV Sbjct: 80 ------GDQQVETVYIPETDRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVW 133 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A ++G+F + G+ R I+N+VMMGMGEPL N NV ++ I D Sbjct: 134 RASKIIGNF----GVTGV------RPITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGL 183 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 SKRR+TLSTSG VP + ++ E I V LAISLHA +++LRN +VPIN+KY ++ML+++ Sbjct: 184 SKRRVTLSTSGVVPALDKLSEMIDVALAISLHAPNDELRNEIVPINKKYNIKMLMESVNR 243 Query: 273 YPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 Y +SNA ++T EYVML IND A L ++LK P KINLIP+NP+P Y S Sbjct: 244 YLNVSNANHGKVTIEYVMLDHINDGTEHAHQLAEVLKNTPCKINLIPWNPFPDAPYAKSS 303 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F + + G++ +R RG DI AACGQL Sbjct: 304 NTRIDRFQKTLMEYGFTVILRKTRGDDIDAACGQL 338 >gi|330999629|ref|ZP_08323338.1| 23S rRNA m2A2503 methyltransferase [Parasutterella excrementihominis YIT 11859] gi|329574135|gb|EGG55711.1| 23S rRNA m2A2503 methyltransferase [Parasutterella excrementihominis YIT 11859] Length = 389 Score = 282 bits (722), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 151/335 (45%), Positives = 206/335 (61%), Gaps = 16/335 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ RG RDF M+D+++ R L + I PEI+ +K + DGTRKWLL Sbjct: 32 FRAKQLERWIHRRGARDFSEMTDLAKSFRAKLEKVAEIRGPEIIRDKTAADGTRKWLLD- 90 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +E VYIP+ RGTLCVSSQ GC++ C FC TG Q RNL A EI+ Q+ Sbjct: 91 ----VGSGNAVEMVYIPQDGRGTLCVSSQAGCAMNCLFCSTGKQGFNRNLKASEIIGQLR 146 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A L G D R ISN+VMMGMGEPL N D V SL + D Sbjct: 147 HAEHTLRKDLGITD-------ENERVISNVVMMGMGEPLQNLDAVIPSLKLMLDDNAYGL 199 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+T+STSG V + ++ E+ V LA+SLHA +N+LR+ ++P+NRK+PLE L+ AC+ Sbjct: 200 SRRRVTVSTSGLVRQMDKLAEQCPVALAVSLHAPNNELRDKIMPVNRKHPLEQLLAACKR 259 Query: 273 YPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 Y L +A R ITFEY+++ G+NDS A LI +++ IP K NLIPFNP+PG S Sbjct: 260 Y--LEHAPRDFITFEYILIGGVNDSLAQAKELITLVQDIPCKFNLIPFNPFPGSGLERSK 317 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +++ F++ + +G + +R RG DI AACGQL Sbjct: 318 PEEVKAFADRLNGAGIVTTVRKVRGDDIDAACGQL 352 >gi|307246190|ref|ZP_07528272.1| hypothetical protein appser1_13950 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255171|ref|ZP_07536989.1| hypothetical protein appser9_14070 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259608|ref|ZP_07541333.1| hypothetical protein appser11_14070 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853125|gb|EFM85348.1| hypothetical protein appser1_13950 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862044|gb|EFM94020.1| hypothetical protein appser9_14070 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866544|gb|EFM98407.1| hypothetical protein appser11_14070 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 393 Score = 282 bits (722), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 156/363 (42%), Positives = 218/363 (60%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+E+ E ++G R Q+ KWIY G +F MS+I++ +R L Sbjct: 25 EKINLMNLTRKEMRELFAEMG----EKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKL 80 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q I PE+ E+ S DGT KW ++ G +IETVYIPE R TLCVSSQVGC Sbjct: 81 KQIAEIKAPEVSVEQRSSDGTIKWAMQV------GDQQIETVYIPEDDRATLCVSSQVGC 134 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNLT EI+ QV A ++G+F + G+ R I+N+VM Sbjct: 135 ALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 184 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D SKRR+TLST+G VP + + E+I V LAISLH Sbjct: 185 MGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKIDVALAISLH 244 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ ++PIN+KY ++ML+D+ Y +SNA ++T EYV+L +ND A L Sbjct: 245 APNDELRDEIMPINKKYNIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQL 304 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+P Y S + F + + G++ +R RG DI AAC Sbjct: 305 AEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAAC 364 Query: 363 GQL 365 GQL Sbjct: 365 GQL 367 >gi|109899434|ref|YP_662689.1| hypothetical protein Patl_3129 [Pseudoalteromonas atlantica T6c] gi|109701715|gb|ABG41635.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudoalteromonas atlantica T6c] Length = 380 Score = 282 bits (722), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 156/362 (43%), Positives = 208/362 (57%), Gaps = 21/362 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ R L E IG R Q+ KWIY G+ DF M+++++ +R L Sbjct: 11 KINLLNFNRAGLREYFSSIG----EKPFRADQMMKWIYQAGVSDFDQMTNLNKALREKLK 66 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + PEI ++ + DGT K+ LR G E+ETV+IP++ R TLCVSSQVGC+ Sbjct: 67 AQCEVKAPEIAYQQGASDGTIKFALRLE-----GGQEVETVWIPDEDRATLCVSSQVGCA 121 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC T Q RNL+ EI+ QV + +G + S R I+N+VMM Sbjct: 122 LECTFCSTAQQGFNRNLSVSEIIGQVWRVATTIG----------LSNDSAKRPITNVVMM 171 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N NV ++ + D + SKRR+TLSTSG VP + +G++I V LAISLHA Sbjct: 172 GMGEPLLNLKNVVPAMDLMLDDLAFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISLHA 231 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 + LR+ +VPIN+KYP++ + R Y SNA ++T EYVML GINDS A L Sbjct: 232 PDDKLRDEIVPINKKYPIQEFLAGVRRYLAKSNANQGKVTVEYVMLNGINDSTDQAHELA 291 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+L P KINLIPFNP+PG Y S I F++ + G +R RG DI AACG Sbjct: 292 KVLADTPCKINLIPFNPYPGSPYSRSSNSRIDRFAKVLSSYGLMVVVRKTRGDDIDAACG 351 Query: 364 QL 365 QL Sbjct: 352 QL 353 >gi|205829853|sp|Q15R53|RLMN_PSEA6 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase Length = 376 Score = 282 bits (722), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 156/362 (43%), Positives = 208/362 (57%), Gaps = 21/362 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ R L E IG R Q+ KWIY G+ DF M+++++ +R L Sbjct: 7 KINLLNFNRAGLREYFSSIG----EKPFRADQMMKWIYQAGVSDFDQMTNLNKALREKLK 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + PEI ++ + DGT K+ LR G E+ETV+IP++ R TLCVSSQVGC+ Sbjct: 63 AQCEVKAPEIAYQQGASDGTIKFALRLE-----GGQEVETVWIPDEDRATLCVSSQVGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC T Q RNL+ EI+ QV + +G + S R I+N+VMM Sbjct: 118 LECTFCSTAQQGFNRNLSVSEIIGQVWRVATTIG----------LSNDSAKRPITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N NV ++ + D + SKRR+TLSTSG VP + +G++I V LAISLHA Sbjct: 168 GMGEPLLNLKNVVPAMDLMLDDLAFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 + LR+ +VPIN+KYP++ + R Y SNA ++T EYVML GINDS A L Sbjct: 228 PDDKLRDEIVPINKKYPIQEFLAGVRRYLAKSNANQGKVTVEYVMLNGINDSTDQAHELA 287 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+L P KINLIPFNP+PG Y S I F++ + G +R RG DI AACG Sbjct: 288 KVLADTPCKINLIPFNPYPGSPYSRSSNSRIDRFAKVLSSYGLMVVVRKTRGDDIDAACG 347 Query: 364 QL 365 QL Sbjct: 348 QL 349 >gi|254252255|ref|ZP_04945573.1| hypothetical protein BDAG_01475 [Burkholderia dolosa AUO158] gi|124894864|gb|EAY68744.1| hypothetical protein BDAG_01475 [Burkholderia dolosa AUO158] Length = 379 Score = 282 bits (722), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 146/342 (42%), Positives = 208/342 (60%), Gaps = 16/342 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ DF GM+D+++ +R L SI P+IV + +S DGTRKWL+ Sbjct: 29 FRAKQLQRWIHQYNASDFDGMTDLAKSLREKLKGRASIAMPDIVSDHVSADGTRKWLID- 87 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE +RGTLCVSSQ GC++ C FC TG Q RNL+ EI+ Q+ Sbjct: 88 ----VGNGNAVETVFIPEGTRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIIGQLR 143 Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 +A R+ LG PG R ++N+VMMGMGEPL N++ V ++ + D Sbjct: 144 MAEFALRASLGRAPGPNG-------KAERVVTNVVMMGMGEPLLNYNAVVPAMRLMLDDN 196 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S+RR+TLSTSG VP + R+G E+ V LA+SLHA ++ LR+ LVP+N+K+PL L+ Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNKKHPLRELMA 256 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 AC+ Y ++ ITFEY ML G+ND+ A L+ + + +P K NLIPFNP+P + Sbjct: 257 ACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRDVPCKFNLIPFNPFPESGLIR 316 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 S + I F++ + +G + +R RG DI AACGQL K Sbjct: 317 SKPEQIKRFAQILIDAGIVTTVRKTRGDDIDAACGQLAGAVK 358 >gi|145638726|ref|ZP_01794335.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae PittII] gi|145272321|gb|EDK12229.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae PittII] Length = 383 Score = 282 bits (722), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 156/363 (42%), Positives = 215/363 (59%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L Sbjct: 14 KKINLMDLTRQQMREFFKQLG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 69 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC Sbjct: 70 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F + G+ R I+N+VM Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ +VPIN+KY ++ LID+ Y +SNA ++T EYVML +ND A L Sbjct: 234 APNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++L P KINLIP+NP+P Y S I F + + G++ IR RG DI AAC Sbjct: 294 AEVLNNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAAC 353 Query: 363 GQL 365 GQL Sbjct: 354 GQL 356 >gi|309750216|gb|ADO80200.1| 23S rRNA m(2)A2503 methyltransferase, SAM-dependent [Haemophilus influenzae R2866] Length = 390 Score = 282 bits (721), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 156/363 (42%), Positives = 215/363 (59%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L Sbjct: 21 KKINLMDLTRQQMREFFKQLG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 76 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC Sbjct: 77 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 130 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F + G+ R I+N+VM Sbjct: 131 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH Sbjct: 181 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 240 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ +VPIN+KY ++ LID+ Y +SNA ++T EYVML +ND A L Sbjct: 241 APNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGVEHAHQL 300 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++L P KINLIP+NP+P Y S I F + + G++ IR RG DI AAC Sbjct: 301 AEVLNNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAAC 360 Query: 363 GQL 365 GQL Sbjct: 361 GQL 363 >gi|311278552|ref|YP_003940783.1| radical SAM enzyme, Cfr family [Enterobacter cloacae SCF1] gi|308747747|gb|ADO47499.1| radical SAM enzyme, Cfr family [Enterobacter cloacae SCF1] Length = 388 Score = 282 bits (721), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 161/379 (42%), Positives = 219/379 (57%), Gaps = 23/379 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R++L E +G R Q+ KW+Y +F M+DI++ +R L Sbjct: 21 KINLLDLNRQQLREFFHNLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 76 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I P++V+E+ S DGT KW + G +ETVYIPE R TLCVSSQVGC+ Sbjct: 77 EVAEIRAPDVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 130 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + G R I+N+VMM Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----AAKVTGQ------RPITNVVMM 180 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 181 GMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 240 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L Sbjct: 241 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMNYGFTTIVRKTRGDDIDAACG 360 Query: 364 QLK-SLSKRIPKVPRQEMQ 381 QL + R + R+ MQ Sbjct: 361 QLAGDVIDRTKRTMRKRMQ 379 >gi|186476180|ref|YP_001857650.1| radical SAM protein [Burkholderia phymatum STM815] gi|205829685|sp|B2JIV3|RLMN_BURP8 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|184192639|gb|ACC70604.1| radical SAM enzyme, Cfr family [Burkholderia phymatum STM815] Length = 382 Score = 282 bits (721), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 148/339 (43%), Positives = 204/339 (60%), Gaps = 6/339 (1%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ DF GM+D+++ +R L SI P +V + IS DGTRKWL+ Sbjct: 29 FRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRASITMPPVVSDHISSDGTRKWLVD- 87 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETVYIPE++RGTLCVSSQ GC++ C FC TG Q RNL EI+ Q+ Sbjct: 88 ----VGNGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLGTGEIIGQLR 143 Query: 153 LARSLLGDFPGCEDIEGMVIPSVG-RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 +A L G G R ++N+VMMGMGEPL N+D V ++ + D Sbjct: 144 MAEFALRASRGTAGGRATGGDGKGERVVTNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYG 203 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S+RR+TLSTSG VP + R+G ++ V LA+SLHA ++ LR+ LVP+N+KYPL L+ AC+ Sbjct: 204 LSRRRVTLSTSGVVPMMDRLGADLPVALAVSLHAPNDALRDELVPLNKKYPLRELMAACQ 263 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 Y ++ ITFEY ML G+NDS A L+ + + +P K NLIPFNP+P L S Sbjct: 264 RYLKVAPRDFITFEYCMLDGVNDSEAHARELLAVTRDVPCKFNLIPFNPFPESGLLRSKS 323 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 + I F++ + +G + +R RG DI AACGQL K Sbjct: 324 EQIKRFAQVLMDAGVVTTVRKTRGDDIDAACGQLAGAVK 362 >gi|94311047|ref|YP_584257.1| hypothetical protein Rmet_2109 [Cupriavidus metallidurans CH34] gi|123260051|sp|Q1LLI8|RLMN_RALME RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|93354899|gb|ABF08988.1| Radical SAM enzyme, Cfr family [Cupriavidus metallidurans CH34] Length = 384 Score = 282 bits (721), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 149/337 (44%), Positives = 202/337 (59%), Gaps = 20/337 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ G F M+D+++ +R L I P + + S DGTRKWLL Sbjct: 27 FRARQLQRWIHQFGASHFDAMTDLAKSLREKLATRAEIRSPAAISDHTSSDGTRKWLLD- 85 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETVYIPE +RGTLCVSSQ GC++ C FC TG Q RNL+ EI+ Q+ Sbjct: 86 ----VGAGNAVETVYIPEDTRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIIGQLW 141 Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 +A R+ LG P E R ISN+VMMGMGEPL N+D V ++ + D Sbjct: 142 MAEFAMRAQLGRGPKDE-----------RVISNVVMMGMGEPLLNYDAVVPAMRLMLDDN 190 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S+RR+TLSTSG VP + R+ +++ V LA+SLHA ++ LR++LVP+NRKYPL L+ Sbjct: 191 AYGLSRRRVTLSTSGVVPMMDRLSKDLPVALAVSLHASNDALRDVLVPLNRKYPLAELMA 250 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 ACR Y + ITFEY ML G+ND A L+K++ +P K NLIPFNP+P Sbjct: 251 ACRRYLEFAPRDFITFEYCMLDGVNDGVEHARELLKLVADVPCKFNLIPFNPFPESGLKR 310 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 S+ + I F++ + +G + IR RG DI AACGQL Sbjct: 311 SNNEQIRRFAQVLMDAGIVTTIRKTRGDDIDAACGQL 347 >gi|332087964|gb|EGI93089.1| hypothetical protein SB521682_2897 [Shigella boydii 5216-82] Length = 384 Score = 282 bits (721), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 161/379 (42%), Positives = 220/379 (58%), Gaps = 23/379 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + G +ETVYIPE R TLCVSSQVGC+ Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAV------GYQRVETVYIPEDDRATLCVSSQVGCA 126 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + G R I+N+VMM Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITNVVMM 176 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356 Query: 364 QLK-SLSKRIPKVPRQEMQ 381 QL + R + R+ MQ Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375 >gi|289612225|emb|CBI60152.1| unnamed protein product [Sordaria macrospora] Length = 278 Score = 282 bits (721), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 138/270 (51%), Positives = 183/270 (67%), Gaps = 14/270 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + L+G+ + E+ AL G R ++R QIW WIY RG +F M+DI++ L+ Sbjct: 23 RTDLVGLSKPEIRAALEAAGFDARQAKLRAKQIWHWIYNRGATEFSAMTDIAKAQHPTLD 82 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +HF I P + + ++S DGTRKWLL P + E V+IP+ RGTLCVSSQVGC+ Sbjct: 83 KHFVIGRPNVKEAQVSTDGTRKWLLTSPDG-----QDYEMVFIPDADRGTLCVSSQVGCT 137 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC+TGT +LVRNLT EI+ QV+LAR LG++P + GR ++NIVMM Sbjct: 138 LNCTFCHTGTMRLVRNLTPGEIVGQVMLARDALGEWPSQPE---------GRMLTNIVMM 188 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFD V+ +LS+ D GL+ SKRRITLSTSG VP +AR GEEIGV LA+SLHA Sbjct: 189 GMGEPLYNFDAVRDALSVVMDGDGLALSKRRITLSTSGVVPMMARAGEEIGVNLAVSLHA 248 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPG 275 V+ ++R+ +VP+NRKY +E L+ AC YPG Sbjct: 249 VTKEVRDEIVPLNRKYGIEELLQACADYPG 278 >gi|134295845|ref|YP_001119580.1| radical SAM protein [Burkholderia vietnamiensis G4] gi|205829687|sp|A4JEP2|RLMN_BURVG RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|134139002|gb|ABO54745.1| 23S rRNA m(2)A-2503 methyltransferase [Burkholderia vietnamiensis G4] Length = 379 Score = 282 bits (721), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 145/342 (42%), Positives = 208/342 (60%), Gaps = 16/342 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ DF GM+D+++ +R L +I PEI + +S DGTRKWL+ Sbjct: 29 FRAKQLQRWIHQYNAGDFDGMTDLAKSLREKLKGRATIGMPEIASDHVSADGTRKWLID- 87 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q RNL+ EI+ Q+ Sbjct: 88 ----VGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLR 143 Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 +A R+ LG PG R ++N+VMMGMGEPL N++ V ++ + D Sbjct: 144 MAEFALRASLGRAPGPNG-------KAERVVTNVVMMGMGEPLLNYNAVVPAMRLMLDDN 196 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S+RR+TLSTSG VP + R+G E+ V LA+SLHA ++ LR+ LVP+N+K+PL L+ Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNKKHPLRELMA 256 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 AC+ Y ++ ITFEY ML G+ND+ A L+ + + +P K NLIPFNP+P + Sbjct: 257 ACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRDVPCKFNLIPFNPFPESGLIR 316 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 S + I F++ + +G + +R RG DI AACGQL K Sbjct: 317 SKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDAACGQLAGAVK 358 >gi|325577793|ref|ZP_08148068.1| cfr family radical SAM enzyme [Haemophilus parainfluenzae ATCC 33392] gi|325160538|gb|EGC72664.1| cfr family radical SAM enzyme [Haemophilus parainfluenzae ATCC 33392] Length = 382 Score = 282 bits (721), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 154/363 (42%), Positives = 217/363 (59%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L Sbjct: 13 KKINLMDLTRQQMREFFAELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 68 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC Sbjct: 69 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 122 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F + G+ R I+N+VM Sbjct: 123 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 172 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + ++I V LAISLH Sbjct: 173 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDMLRDKIDVALAISLH 232 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ ++PIN+KY + ML+D+ Y +SNA ++T EYV+L +ND A L Sbjct: 233 APNDELRDEIMPINKKYNIRMLMDSVHRYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQL 292 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K+LK P KINLIP+NP+P Y S + F + + G++ +R RG DI AAC Sbjct: 293 AKVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAAC 352 Query: 363 GQL 365 GQL Sbjct: 353 GQL 355 >gi|194290009|ref|YP_002005916.1| hypothetical protein RALTA_A1912 [Cupriavidus taiwanensis LMG 19424] gi|193223844|emb|CAQ69853.1| Conserved hypothetical protein; radical SAM enzyme, Cfr family domain; putative iron binding enzyme [Cupriavidus taiwanensis LMG 19424] Length = 384 Score = 282 bits (721), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 147/333 (44%), Positives = 204/333 (61%), Gaps = 12/333 (3%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ G F MSD+++ +R L I P ++ + +S DGTRKWLL Sbjct: 27 FRARQLQRWIHHYGASRFDAMSDLAKSLREKLATRAEIRAPAVITDNLSADGTRKWLLD- 85 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETVYIPE++RGTLCVSSQ GC++ C FC TG Q RNL+ EI+ Q+ Sbjct: 86 ----VGEGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIIGQLW 141 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 +A + + G G P R ISN+VMMGMGEPL N+D V ++ + D Sbjct: 142 MAEFAMREQLG----RG---PKDDRVISNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGL 194 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+TLSTSG VP + R+ +++ V LA+SLHA ++ LR++LVP+N+KYPL L+ ACR Sbjct: 195 SRRRVTLSTSGVVPMMDRLSKDLPVALAVSLHASNDALRDVLVPLNKKYPLAELMAACRR 254 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + ITFEY ML G+ND A L+K++ +P K NLIPFNP+P S+ + Sbjct: 255 YLEFAPRDFITFEYCMLDGVNDGVEHARELLKLVADVPCKFNLIPFNPFPESGLKRSNNE 314 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F++ + +G + IR RG DI AACGQL Sbjct: 315 QIRRFAQVLMDAGVVTTIRKTRGDDIDAACGQL 347 >gi|269140148|ref|YP_003296849.1| hypothetical protein ETAE_2805 [Edwardsiella tarda EIB202] gi|267985809|gb|ACY85638.1| hypothetical protein ETAE_2805 [Edwardsiella tarda EIB202] gi|304559982|gb|ADM42646.1| Ribosomal RNA large subunit methyltransferase N [Edwardsiella tarda FL6-60] Length = 411 Score = 282 bits (721), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 161/363 (44%), Positives = 213/363 (58%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+++ E +++G R QI KWIY DF M+DI++ +R L Sbjct: 43 EKINLLDLDRKQMREFFIQMG----EKPFRADQIMKWIYHYCCDDFDVMTDINKVLRAKL 98 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q I PE+ E+ S DGT KW L+ G +ETVYIPE R TLCVSSQVGC Sbjct: 99 KQVAEIRAPEVAVEQRSSDGTIKWALQV------GDQRVETVYIPEDDRATLCVSSQVGC 152 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNL EI+ QV A ++G + + G R I+N+VM Sbjct: 153 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----AQKVTG------NRPITNVVM 202 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 203 MGMGEPLLNLTNVIPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 262 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++ +R+ +VPINRKY ++M + + R Y SNA R+T EYVML IND A L Sbjct: 263 APNDAIRDEIVPINRKYNIDMFLGSVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQL 322 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + LK P KINLIP+NP+PG + S I FS+ + G++ +R RG DI AAC Sbjct: 323 AECLKDTPCKINLIPWNPFPGAPFGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAAC 382 Query: 363 GQL 365 GQL Sbjct: 383 GQL 385 >gi|157161992|ref|YP_001459310.1| hypothetical protein EcHS_A2668 [Escherichia coli HS] gi|205829751|sp|A8A323|RLMN_ECOHS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|157067672|gb|ABV06927.1| radical SAM enzyme, Cfr family [Escherichia coli HS] Length = 384 Score = 281 bits (720), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 161/379 (42%), Positives = 220/379 (58%), Gaps = 23/379 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + G +ETVYIPE R TLCVSSQVGC+ Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEVDRATLCVSSQVGCA 126 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + G R I+N+VMM Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITNVVMM 176 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356 Query: 364 QLK-SLSKRIPKVPRQEMQ 381 QL + R + R+ MQ Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375 >gi|73541777|ref|YP_296297.1| hypothetical protein Reut_A2089 [Ralstonia eutropha JMP134] gi|123732898|sp|Q46ZI0|RLMN_RALEJ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|72119190|gb|AAZ61453.1| Conserved hypothetical protein 48 [Ralstonia eutropha JMP134] Length = 384 Score = 281 bits (720), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 148/333 (44%), Positives = 202/333 (60%), Gaps = 12/333 (3%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ G F MSD+++ +R L I P + + +S DGTRKWLL Sbjct: 27 FRARQLQRWIHQFGASRFDAMSDLAKSLREKLATRAEIRSPAAITDNLSADGTRKWLLD- 85 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETVYIPE++RGTLCVSSQ GC++ C FC TG Q RNLT EI+ Q+ Sbjct: 86 ----VGNGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLTTGEIIGQLW 141 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 +A + + G G P R ISN+VMMGMGEPL N+D V ++ + D Sbjct: 142 MAEFAMREQLG----RG---PKDDRVISNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGL 194 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+TLSTSG VP + R+ +++ V LA+SLHA ++ LR++LVP+N+KYPL L+ ACR Sbjct: 195 SRRRVTLSTSGVVPMMDRLSKDLPVALAVSLHASNDALRDVLVPLNKKYPLAELMAACRR 254 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + ITFEY ML G+ND A L+K++ +P K NLIPFNP+P S+ Sbjct: 255 YLEFAPRDFITFEYCMLDGVNDGVEHARELLKLVADVPCKFNLIPFNPFPESGLKRSNND 314 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F++ + +G + IR RG DI AACGQL Sbjct: 315 QIRRFAQVLMDAGIVTTIRKTRGDDIDAACGQL 347 >gi|209763358|gb|ACI79991.1| hypothetical protein ECs3379 [Escherichia coli] gi|320646304|gb|EFX15231.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli O157:H- str. 493-89] gi|320651809|gb|EFX20189.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli O157:H- str. H 2687] Length = 384 Score = 281 bits (720), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 160/379 (42%), Positives = 219/379 (57%), Gaps = 23/379 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKTFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + G +ETVYIPE R TLCVSSQVGC+ Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 126 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + G R I+N+VMM Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITNVVMM 176 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+P Y S I FS+ + G+++ +R RG DI AACG Sbjct: 297 ELLKDTPCKINLIPWNPFPAAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356 Query: 364 QLK-SLSKRIPKVPRQEMQ 381 QL + R + R+ MQ Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375 >gi|308274581|emb|CBX31180.1| Ribosomal RNA large subunit methyltransferase N [uncultured Desulfobacterium sp.] Length = 347 Score = 281 bits (720), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 159/368 (43%), Positives = 227/368 (61%), Gaps = 25/368 (6%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN K+++I + ++E L ++GI RT QI+KWIY + + F+ M+DI E+ Sbjct: 1 MNSESKKNIIELTKDEFSFWLKEMGIEA----YRTHQIFKWIYSKQVDTFEEMTDIGLEL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R LL H++I +IS DG++K+L + IE+V IPEK+ TLC+SS Sbjct: 57 RKLLLNHYTINRLNKQKVEISSDGSKKYLF-----GLTDGNYIESVLIPEKNHYTLCISS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC+ C FC T RNLT EI+ QV R + D G E + ++S Sbjct: 112 QVGCAQGCRFCLTAKGGFARNLTKAEIVSQV---RDIQNDVAG----EKL-------RLS 157 Query: 181 NIVMMGMGEPLCNFDNVKKSL-SIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 NIV MGMGEPL N+ NV K++ +I++ GL FSKR+IT+ST+G VP + +G++ GV L Sbjct: 158 NIVFMGMGEPLANYKNVIKAIDTISAKDTGLGFSKRKITISTAGLVPFLKDLGKDAGVNL 217 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 AISL+A N R++L+PINRKYP++ LI+ACR Y L RITFEY+++KG+NDSP DA Sbjct: 218 AISLNAADNSTRDMLMPINRKYPVKELIEACRTYD-LKPRNRITFEYILIKGVNDSPADA 276 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L K+L+ + +KINLIPFN + E+ ++ I F + Y++ IR +G DI Sbjct: 277 NRLAKLLRPVKSKINLIPFNEYETSEFKRPEESVIHHFLNILLNENYTAVIRNSKGQDIS 336 Query: 360 AACGQLKS 367 AACGQL++ Sbjct: 337 AACGQLRA 344 >gi|161524634|ref|YP_001579646.1| radical SAM protein [Burkholderia multivorans ATCC 17616] gi|189350610|ref|YP_001946238.1| Cfr family radical SAM enzyme [Burkholderia multivorans ATCC 17616] gi|160342063|gb|ABX15149.1| radical SAM enzyme, Cfr family [Burkholderia multivorans ATCC 17616] gi|189334632|dbj|BAG43702.1| Cfr family radical SAM enzyme [Burkholderia multivorans ATCC 17616] Length = 378 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 145/342 (42%), Positives = 209/342 (61%), Gaps = 16/342 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ +F GM+D+++ +R L SI P+IV + +S DGTRKWL+ Sbjct: 29 FRAKQLQRWIHQYNAGNFDGMTDLAKSLREKLKGRASITMPDIVSDHVSADGTRKWLVD- 87 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q RNL+ EI+ Q+ Sbjct: 88 ----VGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLR 143 Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 +A R+ LG PG R ++N+VMMGMGEPL N++ V ++ + D Sbjct: 144 MAEFALRASLGRAPGPNG-------KAERVVTNVVMMGMGEPLLNYNAVVPAMRLMLDDN 196 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S+RR+TLSTSG VP + R+G E+ V LA+SLHA ++ LR+ LVP+N+K+PL L+ Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNKKHPLRELMA 256 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 AC+ Y ++ ITFEY ML G+ND+ A L+ + + +P K NLIPFNP+P + Sbjct: 257 ACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRDVPCKFNLIPFNPFPESGLIR 316 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 S + I F++ + +G + +R RG DI AACGQL K Sbjct: 317 SKPEQIKRFAQILIDAGVVTTVRKTRGDDIDAACGQLAGAVK 358 >gi|229846452|ref|ZP_04466560.1| hypothetical protein CGSHi7P49H1_07265 [Haemophilus influenzae 7P49H1] gi|229810545|gb|EEP46263.1| hypothetical protein CGSHi7P49H1_07265 [Haemophilus influenzae 7P49H1] Length = 383 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 156/363 (42%), Positives = 215/363 (59%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L Sbjct: 14 KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 69 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC Sbjct: 70 KTVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F + G+ R I+N+VM Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ +VPIN+KY ++ LID+ Y +SNA ++T EYVML +ND A L Sbjct: 234 APNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+P Y S I F + + ++ IR RG DI AAC Sbjct: 294 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAAC 353 Query: 363 GQL 365 GQL Sbjct: 354 GQL 356 >gi|149908872|ref|ZP_01897532.1| Hypothetical protein yfgB [Moritella sp. PE36] gi|149808146|gb|EDM68087.1| Hypothetical protein yfgB [Moritella sp. PE36] Length = 371 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 160/380 (42%), Positives = 219/380 (57%), Gaps = 25/380 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+ + + IG R Q+ KWIY G D M+++++++R L Sbjct: 4 KKINLLDLDRKAMRQYFADIG----EKPFRADQVMKWIYHEGCDDINEMTNLNKKLREKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PEI E+ S DGT KW L+ + E ETVYIP+ R TLCVSSQVGC Sbjct: 60 LRETVIQAPEISKEQRSADGTIKWALKVDGQ------EYETVYIPDGDRATLCVSSQVGC 113 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNL EI+ QV A ++G + R I+N+VM Sbjct: 114 ALECTFCSTAQQGFNRNLRVSEIIGQVWRASQVIG------------FNNKKRAITNVVM 161 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N N+ +L+I D G SKRR+T+STSG VP + ++ + I V LAISLH Sbjct: 162 MGMGEPLLNMTNLVPALNIMLDDYGFGLSKRRVTVSTSGVVPALDKLADSIDVALAISLH 221 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNL 302 A ++ LR+ LVPIN+KY +EML+ + ++Y G SNA R +T EYV+L +NDS A L Sbjct: 222 ASNDTLRDELVPINKKYNIEMLLASVKNYIGKSNANRKKVTIEYVLLDHVNDSTDQAHEL 281 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK P KINLIPFNP+PG +Y I F++ + + IR RG DI AAC Sbjct: 282 AHLLKDTPCKINLIPFNPFPGSDYGKPSNSRIDRFNKVLMEYENTVTIRKTRGDDIDAAC 341 Query: 363 GQLK-SLSKRIPKVPRQEMQ 381 GQL + R + ++ MQ Sbjct: 342 GQLAGDVIDRTKRTLKKRMQ 361 >gi|261340821|ref|ZP_05968679.1| radical SAM enzyme, Cfr family [Enterobacter cancerogenus ATCC 35316] gi|288317247|gb|EFC56185.1| radical SAM enzyme, Cfr family [Enterobacter cancerogenus ATCC 35316] Length = 388 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 160/379 (42%), Positives = 219/379 (57%), Gaps = 23/379 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E ++G R Q+ KW+Y +F M+DI++ +R+ L Sbjct: 21 KINLLDLNRQQMREFFKEMG----EKPFRADQVMKWMYHYCSDNFDDMTDINKVLRNKLK 76 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + G +ETVYIPE R TLCVSSQVGC+ Sbjct: 77 EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 130 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + G R I+N+VMM Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGT------RPITNVVMM 180 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 181 GMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 240 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++ +R+ +VPIN+KY +E + R Y SNA R+T EYVML +ND A L Sbjct: 241 PNDAIRDEIVPINKKYNIETFLAGVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHELA 300 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACG 360 Query: 364 QLK-SLSKRIPKVPRQEMQ 381 QL + R + R+ MQ Sbjct: 361 QLAGDVIDRTKRTLRKRMQ 379 >gi|16272313|ref|NP_438526.1| ribosomal RNA large subunit methyltransferase N [Haemophilus influenzae Rd KW20] gi|260580572|ref|ZP_05848400.1| ribosomal RNA large subunit methyltransferase N [Haemophilus influenzae RdAW] gi|1175973|sp|P44665|RLMN_HAEIN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|1573332|gb|AAC22023.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] gi|260092914|gb|EEW76849.1| ribosomal RNA large subunit methyltransferase N [Haemophilus influenzae RdAW] Length = 390 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 156/363 (42%), Positives = 215/363 (59%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L Sbjct: 21 KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 76 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC Sbjct: 77 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 130 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F + G+ R I+N+VM Sbjct: 131 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH Sbjct: 181 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 240 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ +VPIN+KY ++ LID+ Y +SNA ++T EYVML +ND A L Sbjct: 241 APNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGVEHAHQL 300 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+P Y S I F + + ++ IR RG DI AAC Sbjct: 301 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAAC 360 Query: 363 GQL 365 GQL Sbjct: 361 GQL 363 >gi|167823864|ref|ZP_02455335.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei 9] gi|226197115|ref|ZP_03792692.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei Pakistan 9] gi|237812551|ref|YP_002897002.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei MSHR346] gi|225930494|gb|EEH26504.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei Pakistan 9] gi|237502725|gb|ACQ95043.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei MSHR346] Length = 378 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 147/342 (42%), Positives = 208/342 (60%), Gaps = 16/342 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ DF GM+D+++ +R L I P+I+ + +S DGTRKWL+ Sbjct: 29 FRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRAVIGTPDILSDHVSADGTRKWLIN- 87 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q RNL+ EI+ Q+ Sbjct: 88 ----VGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLR 143 Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 +A R+ LG PG V R I+N+VMMGMGEPL N+ V ++ + D Sbjct: 144 MAEFALRASLGRAPGPNG-------KVERVITNVVMMGMGEPLLNYSAVVPAMRLMLDDN 196 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S+RR+TLSTSG VP + R+G E+ V LA+SLHA ++ LR+ LVP+N+K+PL L+ Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNKKHPLRELMA 256 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 AC+ Y ++ ITFEY ML G+ND+ A L+ + + +P K NLIPFNP+P + Sbjct: 257 ACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRDVPCKFNLIPFNPFPESGLVR 316 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 S + I F++ + +G + IR RG DI AACGQL K Sbjct: 317 SKTEQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLAGAVK 358 >gi|85712740|ref|ZP_01043785.1| Predicted Fe-S-cluster redox enzyme [Idiomarina baltica OS145] gi|85693472|gb|EAQ31425.1| Predicted Fe-S-cluster redox enzyme [Idiomarina baltica OS145] Length = 378 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 162/385 (42%), Positives = 231/385 (60%), Gaps = 26/385 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+ ++ ++G R Q+ KW+Y + DF M+++++ +R L Sbjct: 7 KKVNLLNLNRDGMKAFFKEMG----EKPFRADQVMKWLYHFCVDDFDEMTNLNKGLREKL 62 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q I PEI +++ S DGT K+++ + ++ETV+IPE+ R TLCVSSQVGC Sbjct: 63 KQCAEIRAPEIREQQQSSDGTIKFVM-----TLFDGQDVETVWIPERDRATLCVSSQVGC 117 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC TG Q RNL EI+ QV LLG + G I + ++N+VM Sbjct: 118 ALECTFCSTGQQGFNRNLNVAEIIGQVWRVNQLLGAY-GKTGI---------KPVTNVVM 167 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ + D G SKRR+TLSTSG VP + ++ E+I VMLAISLH Sbjct: 168 MGMGEPLLNLNNVVPAMDLMMDDYGFGLSKRRVTLSTSGVVPALDKLREQIDVMLAISLH 227 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNLI 303 A +++LRN +VPIN+KY +E + + R Y S A+ ++T EYVML +NDS A L Sbjct: 228 APNDELRNEIVPINKKYNIEQFLASSRKYVEQSKAQHKVTVEYVMLDHVNDSMDQAHELA 287 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 + LK P+KINLIPFNP+PG +Y S I F++ + G++ +R RG DI AACG Sbjct: 288 RTLKDTPSKINLIPFNPFPGSDYGRSSNSRIDRFAKVLMDYGFTVMVRKTRGDDIDAACG 347 Query: 364 QLK----SLSKRIPKVPRQEMQITG 384 QL +KRI K RQ+ Q G Sbjct: 348 QLVGDVIDRTKRILK--RQQAQRGG 370 >gi|218706020|ref|YP_002413539.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli UMN026] gi|293405958|ref|ZP_06649950.1| hypothetical protein ECGG_01315 [Escherichia coli FVEC1412] gi|298381759|ref|ZP_06991358.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli FVEC1302] gi|300898379|ref|ZP_07116722.1| radical SAM enzyme, Cfr family [Escherichia coli MS 198-1] gi|254807179|sp|B7N6A5|RLMN_ECOLU RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|218433117|emb|CAR14014.1| putative Fe-S containing enzyme [Escherichia coli UMN026] gi|291428166|gb|EFF01193.1| hypothetical protein ECGG_01315 [Escherichia coli FVEC1412] gi|298279201|gb|EFI20715.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli FVEC1302] gi|300357919|gb|EFJ73789.1| radical SAM enzyme, Cfr family [Escherichia coli MS 198-1] Length = 384 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 161/379 (42%), Positives = 220/379 (58%), Gaps = 23/379 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + G +ETVYIPE R TLCVSSQVGC+ Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 126 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + G R I+N+VMM Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITNVVMM 176 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRCYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356 Query: 364 QLK-SLSKRIPKVPRQEMQ 381 QL + R + R+ MQ Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375 >gi|295097942|emb|CBK87032.1| 23S rRNA m(2)A-2503 methyltransferase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 388 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 160/379 (42%), Positives = 219/379 (57%), Gaps = 23/379 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E ++G R Q+ KW+Y +F M+DI++ +R+ L Sbjct: 21 KINLLDLNRQQMREFFKEMG----EKPFRADQVMKWMYHYCSDNFDDMTDINKVLRNKLK 76 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + G +ETVYIPE R TLCVSSQVGC+ Sbjct: 77 EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 130 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + G R I+N+VMM Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGT------RPITNVVMM 180 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 181 GMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 240 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++ +R+ +VPIN+KY +E + R Y SNA R+T EYVML +ND A L Sbjct: 241 PNDAIRDEIVPINKKYNIETFLAGVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHELA 300 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACG 360 Query: 364 QLK-SLSKRIPKVPRQEMQ 381 QL + R + R+ MQ Sbjct: 361 QLAGDVIDRTKRTLRKRMQ 379 >gi|213580692|ref|ZP_03362518.1| hypothetical protein SentesTyph_05537 [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 386 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 162/384 (42%), Positives = 220/384 (57%), Gaps = 23/384 (5%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 +N K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ + Sbjct: 16 LNNETKINLLDLNRQQMREFFKNLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVL 71 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L + I PE+V+E+ S DGT KW + G +ETVYIPE R TLCVSS Sbjct: 72 RGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSS 125 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC+L C FC T Q RNL EI+ QV A ++G + G R I+ Sbjct: 126 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPIT 175 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LA Sbjct: 176 NVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALA 235 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRD 298 ISLHA ++ +R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND Sbjct: 236 ISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEH 295 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI Sbjct: 296 AHQLAELLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDI 355 Query: 359 LAACGQLK-SLSKRIPKVPRQEMQ 381 AACGQL + R + R+ MQ Sbjct: 356 DAACGQLAGDVIDRTKRTLRKRMQ 379 >gi|30248171|ref|NP_840241.1| hypothetical protein NE0145 [Nitrosomonas europaea ATCC 19718] gi|30180056|emb|CAD84056.1| Conserved hypothetical protein 48 [Nitrosomonas europaea ATCC 19718] Length = 361 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 151/337 (44%), Positives = 204/337 (60%), Gaps = 10/337 (2%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93 R Q+ +W++ G DF MSD+++ RH L + + PEIV + + DGTRKWLL Sbjct: 7 RARQLLRWVHQSGKTDFMEMSDLAKGFRHKLMECAVVQLPEIVSDHTAGDGTRKWLL--- 63 Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153 G +E V+IPE SRGTLCVSSQVGC+L CSFC TG Q RNL+ EI+ Q+ Sbjct: 64 --STGAGNAVEMVFIPEPSRGTLCVSSQVGCALACSFCSTGRQGFNRNLSVAEIIGQLWW 121 Query: 154 ARSLL-----GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 A LL FP P R ++N+VMMGMGEPL NF+N+ +L + Sbjct: 122 ANRLLEAGSHDPFPLDTTRVQTDKPETRRPVTNVVMMGMGEPLANFENLVTALDLMLSDD 181 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S+RR+T+STSG VP + R+ E V LA+SLHA ++ LR+ LVPIN+KYP+ L+ Sbjct: 182 AYGLSRRRVTVSTSGLVPALDRLRERCPVALAVSLHAPNDALRDQLVPINKKYPIRDLLA 241 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 AC Y + ITFEYVMLKG+NDS A L+++++ +P K+NLIPFN + G Y Sbjct: 242 ACERYLPAAPRDFITFEYVMLKGVNDSVALARELVQLVRNVPCKLNLIPFNAFSGSGYER 301 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 S + I F + + ++G + +R RG DI AACGQL Sbjct: 302 SGAEAIGNFRDVLMQAGIVTTVRKTRGDDIAAACGQL 338 >gi|24113846|ref|NP_708356.1| hypothetical protein SF2563 [Shigella flexneri 2a str. 301] gi|30063909|ref|NP_838080.1| hypothetical protein S2735 [Shigella flexneri 2a str. 2457T] gi|110806448|ref|YP_689968.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri 5 str. 8401] gi|81723142|sp|Q83K42|RLMN_SHIFL RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123342626|sp|Q0T202|RLMN_SHIF8 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|24052937|gb|AAN44063.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|30042165|gb|AAP17890.1| hypothetical protein S2735 [Shigella flexneri 2a str. 2457T] gi|110615996|gb|ABF04663.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] gi|313651003|gb|EFS15403.1| UPF0063 protein yfgB [Shigella flexneri 2a str. 2457T] gi|332754204|gb|EGJ84572.1| hypothetical protein SF434370_2731 [Shigella flexneri 4343-70] gi|332755567|gb|EGJ85931.1| hypothetical protein SFK671_3114 [Shigella flexneri K-671] gi|332756478|gb|EGJ86829.1| hypothetical protein SF274771_3067 [Shigella flexneri 2747-71] gi|332766350|gb|EGJ96560.1| 23S rRNA methyltransferase [Shigella flexneri 2930-71] gi|333016202|gb|EGK35533.1| hypothetical protein SFK304_3333 [Shigella flexneri K-304] Length = 384 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 160/379 (42%), Positives = 219/379 (57%), Gaps = 23/379 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKTFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + G +ETVYIPE R TLCVSSQVGC+ Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 126 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + G R I+N+VMM Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITNVVMM 176 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+P Y S I FS+ + G+++ +R RG DI AACG Sbjct: 297 ELLKDTPCKINLIPWNPFPDAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356 Query: 364 QLK-SLSKRIPKVPRQEMQ 381 QL + R + R+ MQ Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375 >gi|301154683|emb|CBW14146.1| predicted enzyme [Haemophilus parainfluenzae T3T1] Length = 382 Score = 281 bits (718), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 153/363 (42%), Positives = 218/363 (60%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L Sbjct: 13 KKINLMDLTRQQMREFFAELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 68 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC Sbjct: 69 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 122 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F + G+ R I+N+VM Sbjct: 123 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 172 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + ++I V LAISLH Sbjct: 173 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDMLRDKIDVALAISLH 232 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ ++PIN+KY ++ML+D+ Y +SNA ++T EYV+L +ND A L Sbjct: 233 APNDELRDEIMPINKKYNIKMLMDSVHRYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQL 292 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+P Y S + F + + G++ +R RG DI AAC Sbjct: 293 AQVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAAC 352 Query: 363 GQL 365 GQL Sbjct: 353 GQL 355 >gi|15832633|ref|NP_311406.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli O157:H7 str. Sakai] gi|168748424|ref|ZP_02773446.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4113] gi|168756289|ref|ZP_02781296.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4401] gi|168761127|ref|ZP_02786134.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4501] gi|168768609|ref|ZP_02793616.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4486] gi|168773569|ref|ZP_02798576.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4196] gi|168778483|ref|ZP_02803490.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4076] gi|168787863|ref|ZP_02812870.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC869] gi|168798888|ref|ZP_02823895.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC508] gi|195936659|ref|ZP_03082041.1| hypothetical protein EscherichcoliO157_09385 [Escherichia coli O157:H7 str. EC4024] gi|208808631|ref|ZP_03250968.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4206] gi|208814380|ref|ZP_03255709.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4045] gi|208820776|ref|ZP_03261096.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4042] gi|209400754|ref|YP_002271987.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4115] gi|217327135|ref|ZP_03443218.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. TW14588] gi|254794463|ref|YP_003079300.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli O157:H7 str. TW14359] gi|261223051|ref|ZP_05937332.1| predicted enzyme [Escherichia coli O157:H7 str. FRIK2000] gi|261259398|ref|ZP_05951931.1| predicted enzyme [Escherichia coli O157:H7 str. FRIK966] gi|291283738|ref|YP_003500556.1| Radical SAM enzyme, Cfr family [Escherichia coli O55:H7 str. CB9615] gi|205829862|sp|Q8XAA4|RLMN_ECO57 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807175|sp|B5Z0Y6|RLMN_ECO5E RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|13362849|dbj|BAB36802.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|187770632|gb|EDU34476.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4196] gi|188017093|gb|EDU55215.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4113] gi|189003147|gb|EDU72133.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4076] gi|189356574|gb|EDU74993.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4401] gi|189362276|gb|EDU80695.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4486] gi|189368421|gb|EDU86837.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4501] gi|189372335|gb|EDU90751.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC869] gi|189378598|gb|EDU97014.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC508] gi|208728432|gb|EDZ78033.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4206] gi|208735657|gb|EDZ84344.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4045] gi|208740899|gb|EDZ88581.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4042] gi|209162154|gb|ACI39587.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4115] gi|209763360|gb|ACI79992.1| hypothetical protein ECs3379 [Escherichia coli] gi|209763362|gb|ACI79993.1| hypothetical protein ECs3379 [Escherichia coli] gi|209763364|gb|ACI79994.1| hypothetical protein ECs3379 [Escherichia coli] gi|209763366|gb|ACI79995.1| hypothetical protein ECs3379 [Escherichia coli] gi|217319502|gb|EEC27927.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. TW14588] gi|254593863|gb|ACT73224.1| predicted enzyme [Escherichia coli O157:H7 str. TW14359] gi|290763611|gb|ADD57572.1| Radical SAM enzyme, Cfr family [Escherichia coli O55:H7 str. CB9615] gi|320188850|gb|EFW63509.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli O157:H7 str. EC1212] gi|320640861|gb|EFX10349.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli O157:H7 str. G5101] gi|320657195|gb|EFX25004.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662801|gb|EFX30133.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli O55:H7 str. USDA 5905] gi|320667605|gb|EFX34520.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli O157:H7 str. LSU-61] gi|326340315|gb|EGD64119.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli O157:H7 str. 1125] gi|326344999|gb|EGD68743.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli O157:H7 str. 1044] Length = 384 Score = 281 bits (718), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 160/379 (42%), Positives = 219/379 (57%), Gaps = 23/379 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + G +ETVYIPE R TLCVSSQVGC+ Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 126 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + G R I+N+VMM Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITNVVMM 176 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+P Y S I FS+ + G+++ +R RG DI AACG Sbjct: 297 ELLKDTPCKINLIPWNPFPAAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356 Query: 364 QLK-SLSKRIPKVPRQEMQ 381 QL + R + R+ MQ Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375 >gi|271501574|ref|YP_003334600.1| radical SAM enzyme, Cfr family [Dickeya dadantii Ech586] gi|270345129|gb|ACZ77894.1| radical SAM enzyme, Cfr family [Dickeya dadantii Ech586] Length = 392 Score = 281 bits (718), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 159/380 (41%), Positives = 218/380 (57%), Gaps = 23/380 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ R+++ ++G R Q+ KW+Y DF M+DI++ +R L Sbjct: 24 EKINLLDFNRQQMRAFFAQLG----EKPFRADQVMKWMYHYCCDDFNQMTDINKVLRGKL 79 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+VDE+ S DGT KW + + +ETVYIPE R TLCVSSQVGC Sbjct: 80 QAIAEIRAPEVVDEQRSSDGTIKWAILVDGQ------RVETVYIPEDDRATLCVSSQVGC 133 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNL EI+ QV A ++G + G R I+N+VM Sbjct: 134 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----AAKVTGQ------RPITNVVM 183 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 184 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 243 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++++RN ++PIN+KY +E + A R Y SNA R+T EYVML IND A L Sbjct: 244 APTDEIRNEIMPINKKYDIETFLAAVRRYLDKSNANQGRVTVEYVMLDHINDGTEHAHQL 303 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AAC Sbjct: 304 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 363 Query: 363 GQLK-SLSKRIPKVPRQEMQ 381 GQL + R + +++M+ Sbjct: 364 GQLAGEVVDRTKRTLKKKME 383 >gi|145632612|ref|ZP_01788346.1| hypothetical protein CGSHi3655_02319 [Haemophilus influenzae 3655] gi|144986807|gb|EDJ93359.1| hypothetical protein CGSHi3655_02319 [Haemophilus influenzae 3655] Length = 383 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 157/363 (43%), Positives = 214/363 (58%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+++ E ++G R Q+ KWIY G +F M +I++++R L Sbjct: 14 KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMININKKLREKL 69 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC Sbjct: 70 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F + G+ R I+N+VM Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ +VPIN+KY ++MLID+ Y +SNA ++T EYVML +ND A L Sbjct: 234 APNDELRDEIVPINKKYNIKMLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK P KINLIP+NP+P Y S I F + + ++ IR RG DI AAC Sbjct: 294 ADVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAAC 353 Query: 363 GQL 365 GQL Sbjct: 354 GQL 356 >gi|16761440|ref|NP_457057.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29140863|ref|NP_804205.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56412596|ref|YP_149671.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62181092|ref|YP_217509.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161612716|ref|YP_001586681.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167549454|ref|ZP_02343213.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168232093|ref|ZP_02657151.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168238262|ref|ZP_02663320.1| radical SAM enzyme, Cfr family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168243305|ref|ZP_02668237.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261436|ref|ZP_02683409.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168466724|ref|ZP_02700578.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168821500|ref|ZP_02833500.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194444721|ref|YP_002041783.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448097|ref|YP_002046583.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469426|ref|ZP_03075410.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194738017|ref|YP_002115587.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197361531|ref|YP_002141167.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198245006|ref|YP_002216589.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388216|ref|ZP_03214828.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204929473|ref|ZP_03220547.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353624|ref|YP_002227425.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857933|ref|YP_002244584.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213161946|ref|ZP_03347656.1| hypothetical protein Salmoneentericaenterica_18887 [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425329|ref|ZP_03358079.1| hypothetical protein SentesTyphi_06363 [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213649661|ref|ZP_03379714.1| hypothetical protein SentesTy_21620 [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213857325|ref|ZP_03384296.1| hypothetical protein SentesT_19305 [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224582938|ref|YP_002636736.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|289825424|ref|ZP_06544661.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|75481689|sp|Q57LI4|RLMN_SALCH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|81362045|sp|Q5PNI4|RLMN_SALPA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|81628152|sp|Q8Z4P2|RLMN_SALTI RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829875|sp|A9N1Z8|RLMN_SALPB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807202|sp|B5FR66|RLMN_SALDC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807203|sp|B5R584|RLMN_SALEP RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807204|sp|B5RCZ4|RLMN_SALG2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807205|sp|B4TD95|RLMN_SALHS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807206|sp|B4T0Q1|RLMN_SALNS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807207|sp|C0PYM8|RLMN_SALPC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807208|sp|B5BAY3|RLMN_SALPK RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807209|sp|B4TR97|RLMN_SALSV RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|25320182|pir||AD0822 conserved hypothetical protein STY2770 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503740|emb|CAD02728.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29136488|gb|AAO68054.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56126853|gb|AAV76359.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62128725|gb|AAX66428.1| putative Fe-S-cluster redox enzyme [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161362080|gb|ABX65848.1| hypothetical protein SPAB_00414 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403384|gb|ACF63606.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406401|gb|ACF66620.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194455790|gb|EDX44629.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194713519|gb|ACF92740.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630780|gb|EDX49372.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197093007|emb|CAR58440.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197288805|gb|EDY28178.1| radical SAM enzyme, Cfr family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197939522|gb|ACH76855.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605314|gb|EDZ03859.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321192|gb|EDZ06392.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205273405|emb|CAR38380.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205325472|gb|EDZ13311.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205333531|gb|EDZ20295.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205337567|gb|EDZ24331.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205342014|gb|EDZ28778.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349318|gb|EDZ35949.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709736|emb|CAR34088.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224467465|gb|ACN45295.1| hypothetical protein SPC_1129 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|320087020|emb|CBY96789.1| Ribosomal RNA large subunit methyltransferase N 23S rRNA m2A2503 methyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322613730|gb|EFY10669.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619527|gb|EFY16403.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625032|gb|EFY21861.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629525|gb|EFY26301.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634044|gb|EFY30781.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635518|gb|EFY32229.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639806|gb|EFY36485.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644428|gb|EFY40969.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648573|gb|EFY45022.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655207|gb|EFY51516.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658254|gb|EFY54520.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664255|gb|EFY60452.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669422|gb|EFY65571.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673149|gb|EFY69255.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676541|gb|EFY72609.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683291|gb|EFY79305.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685823|gb|EFY81816.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715579|gb|EFZ07150.1| Ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323194766|gb|EFZ79954.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199546|gb|EFZ84637.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204679|gb|EFZ89677.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208127|gb|EFZ93072.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210149|gb|EFZ95050.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217017|gb|EGA01739.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221815|gb|EGA06219.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225006|gb|EGA09261.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229295|gb|EGA13419.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235390|gb|EGA19474.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237424|gb|EGA21487.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245178|gb|EGA29179.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248881|gb|EGA32807.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253168|gb|EGA37000.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255402|gb|EGA39170.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262039|gb|EGA45604.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266350|gb|EGA49838.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269819|gb|EGA53269.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624345|gb|EGE30690.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628724|gb|EGE35067.1| Ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 388 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 162/384 (42%), Positives = 220/384 (57%), Gaps = 23/384 (5%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 +N K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ + Sbjct: 16 LNNETKINLLDLNRQQMREFFKNLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVL 71 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L + I PE+V+E+ S DGT KW + G +ETVYIPE R TLCVSS Sbjct: 72 RGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSS 125 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC+L C FC T Q RNL EI+ QV A ++G + G R I+ Sbjct: 126 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPIT 175 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LA Sbjct: 176 NVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALA 235 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRD 298 ISLHA ++ +R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND Sbjct: 236 ISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEH 295 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI Sbjct: 296 AHQLAELLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDI 355 Query: 359 LAACGQLK-SLSKRIPKVPRQEMQ 381 AACGQL + R + R+ MQ Sbjct: 356 DAACGQLAGDVIDRTKRTLRKRMQ 379 >gi|242240158|ref|YP_002988339.1| ribosomal RNA large subunit methyltransferase N [Dickeya dadantii Ech703] gi|242132215|gb|ACS86517.1| radical SAM enzyme, Cfr family [Dickeya dadantii Ech703] Length = 393 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 157/362 (43%), Positives = 209/362 (57%), Gaps = 22/362 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ +G R Q+ KWIY DF M+DI++ +R L Sbjct: 25 KINLLDLNRQQMRAFFAALG----EKPFRADQVMKWIYHYCCDDFNQMTDINKALRTRLQ 80 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I P++VDE+ S DGT KW + + +ETVYIPE R TLCVSSQVGC+ Sbjct: 81 AIAEIRAPDVVDEQRSSDGTIKWAILVDGQ------RVETVYIPEDDRATLCVSSQVGCA 134 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + G R I+N+VMM Sbjct: 135 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----AAKVTGQ------RPITNVVMM 184 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 185 GMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 244 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++RN ++PIN+KY +E + A R Y SNA R+T EYVML IND A L Sbjct: 245 PTDEIRNEIMPINKKYDIETFLAAVRRYLDKSNANQGRVTVEYVMLDHINDGTEHAHQLA 304 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AACG Sbjct: 305 ECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 364 Query: 364 QL 365 QL Sbjct: 365 QL 366 >gi|260582543|ref|ZP_05850333.1| ribosomal RNA large subunit methyltransferase N [Haemophilus influenzae NT127] gi|260094354|gb|EEW78252.1| ribosomal RNA large subunit methyltransferase N [Haemophilus influenzae NT127] Length = 390 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 156/363 (42%), Positives = 214/363 (58%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L Sbjct: 21 KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 76 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC Sbjct: 77 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 130 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F + G+ R I+N+VM Sbjct: 131 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH Sbjct: 181 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 240 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ +VPIN+KY ++ LID+ Y +SNA ++T EYVML +ND A L Sbjct: 241 APNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGVEHAHQL 300 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK P KINLIP+NP+P Y S I F + + ++ IR RG DI AAC Sbjct: 301 ADVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAAC 360 Query: 363 GQL 365 GQL Sbjct: 361 GQL 363 >gi|85059741|ref|YP_455443.1| hypothetical protein SG1763 [Sodalis glossinidius str. 'morsitans'] gi|123752598|sp|Q2NS37|RLMN_SODGM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|84780261|dbj|BAE75038.1| conserved hypothetical protein [Sodalis glossinidius str. 'morsitans'] Length = 393 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 159/363 (43%), Positives = 210/363 (57%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ M R++L E +G R Q+ KWIY DF M+DI++ +R L Sbjct: 25 QKLNLLDMNRQQLREFFSSMG----EKPFRADQVMKWIYHYCCDDFDQMTDINKHLRARL 80 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+ +E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC Sbjct: 81 KALAEIRAPEVAEEQRSADGTIKWAIKV------GDQQVETVYIPEDDRATLCVSSQVGC 134 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNL EI+ QV A ++G + G R I+N+VM Sbjct: 135 ALQCTFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----AAKVTGQ------RPITNVVM 184 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 185 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALEKLGDMIDVALAISLH 244 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++ +R+ +VPINRKY +E + A R Y SNA R+T EYVML IND A L Sbjct: 245 APNDTIRDEIVPINRKYNIETFLSAVRCYLDKSNANKGRVTVEYVMLDHINDGTEHAHQL 304 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 LK P KINLIP+NP+PG Y S + F++ + +++ +R RG DI AAC Sbjct: 305 AACLKYTPCKINLIPWNPFPGAPYGRSSNSRVDRFAKVLMGYEFTTIVRKTRGDDIDAAC 364 Query: 363 GQL 365 GQL Sbjct: 365 GQL 367 >gi|205829851|sp|Q82XV4|RLMN_NITEU RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase Length = 379 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 151/337 (44%), Positives = 204/337 (60%), Gaps = 10/337 (2%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93 R Q+ +W++ G DF MSD+++ RH L + + PEIV + + DGTRKWLL Sbjct: 25 RARQLLRWVHQSGKTDFMEMSDLAKGFRHKLMECAVVQLPEIVSDHTAGDGTRKWLL--- 81 Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153 G +E V+IPE SRGTLCVSSQVGC+L CSFC TG Q RNL+ EI+ Q+ Sbjct: 82 --STGAGNAVEMVFIPEPSRGTLCVSSQVGCALACSFCSTGRQGFNRNLSVAEIIGQLWW 139 Query: 154 ARSLL-----GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 A LL FP P R ++N+VMMGMGEPL NF+N+ +L + Sbjct: 140 ANRLLEAGSHDPFPLDTTRVQTDKPETRRPVTNVVMMGMGEPLANFENLVTALDLMLSDD 199 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S+RR+T+STSG VP + R+ E V LA+SLHA ++ LR+ LVPIN+KYP+ L+ Sbjct: 200 AYGLSRRRVTVSTSGLVPALDRLRERCPVALAVSLHAPNDALRDQLVPINKKYPIRDLLA 259 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 AC Y + ITFEYVMLKG+NDS A L+++++ +P K+NLIPFN + G Y Sbjct: 260 ACERYLPAAPRDFITFEYVMLKGVNDSVALARELVQLVRNVPCKLNLIPFNAFSGSGYER 319 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 S + I F + + ++G + +R RG DI AACGQL Sbjct: 320 SGAEAIGNFRDVLMQAGIVTTVRKTRGDDIAAACGQL 356 >gi|187928149|ref|YP_001898636.1| radical SAM enzyme, Cfr family [Ralstonia pickettii 12J] gi|254807195|sp|B2U9U6|RLMN_RALPJ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|187725039|gb|ACD26204.1| radical SAM enzyme, Cfr family [Ralstonia pickettii 12J] Length = 383 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 145/337 (43%), Positives = 207/337 (61%), Gaps = 20/337 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ G +F M+D+++ +R L +I P ++ + +S DGTRKWL+ Sbjct: 27 FRAKQLQRWIHQSGASEFGEMTDLAKSLREKLATRANIQAPAVISDHLSSDGTRKWLVD- 85 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETVYIPE++RGTLCVSSQ GC++ C FC TG Q RNL+ EI+ Q+ Sbjct: 86 ----VGQGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIIGQLW 141 Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 +A R LG P + R I+N+VMMGMGEPL N+D V +L++ D Sbjct: 142 MAEFAMRKQLGRGPKDD-----------RVITNVVMMGMGEPLLNYDAVVPALALMLDDN 190 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S+RR+T+STSG VP + R+ ++ V LA+SLHA ++ LR++LVP+N+KYPL L+ Sbjct: 191 AYGLSRRRVTVSTSGVVPMMDRLARDVPVALAVSLHASNDALRDVLVPLNKKYPLAELMA 250 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 ACR Y + ITFEY ML G+ND+ A L++++ +P K NLIPFNP+P Sbjct: 251 ACRRYLEFAPRDFITFEYCMLDGVNDTVEHARELLRVVADVPCKFNLIPFNPFPESGLKR 310 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 S+ + I FS+ + +G + IR RG DI AACGQL Sbjct: 311 SNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDAACGQL 347 >gi|193068396|ref|ZP_03049359.1| radical SAM enzyme, Cfr family [Escherichia coli E110019] gi|192958348|gb|EDV88788.1| radical SAM enzyme, Cfr family [Escherichia coli E110019] Length = 384 Score = 280 bits (717), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 156/352 (44%), Positives = 208/352 (59%), Gaps = 19/352 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ KW+Y +F M+DI++ +R L + I PE+V+E+ S DGT KW + Sbjct: 40 FRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAV 99 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G +ETVYIPE R TLCVSSQVGC+L C FC T Q RNL EI+ QV Sbjct: 100 ------GDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVW 153 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A ++G + G R I+N+VMMGMGEPL N +NV ++ I D G Sbjct: 154 RAAKIVG----AAKVTGQ------RPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGL 203 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 SKRR+TLSTSG VP + ++G+ I V LAISLHA ++++R+ +VPIN+KY +E + A R Sbjct: 204 SKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRR 263 Query: 273 YPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 Y SNA R+T EYVML +ND A L ++LK P KINLIP+NP+PG Y S Sbjct: 264 YLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFPGAPYGRSS 323 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK-SLSKRIPKVPRQEMQ 381 I FS+ + G+++ +R RG DI AACGQL + R + R+ MQ Sbjct: 324 NSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKRMQ 375 >gi|294637694|ref|ZP_06715971.1| radical SAM enzyme, Cfr family [Edwardsiella tarda ATCC 23685] gi|291089124|gb|EFE21685.1| radical SAM enzyme, Cfr family [Edwardsiella tarda ATCC 23685] Length = 411 Score = 280 bits (717), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 160/363 (44%), Positives = 210/363 (57%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+++ E +G R QI KWIY DF M+DI++ +R L Sbjct: 43 EKINLLDLNRKQMREFFAAMG----EKPFRADQIMKWIYHYCCDDFDAMTDINKVLRAKL 98 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q I PE+ E+ S DGT KW L+ G +ETVYIPE R TLCVSSQVGC Sbjct: 99 KQVAEIRAPEVAVEQRSSDGTIKWALQV------GDQRVETVYIPEDDRATLCVSSQVGC 152 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNL EI+ QV A ++G + + G R I+N+VM Sbjct: 153 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----AQKVTG------NRPITNVVM 202 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 203 MGMGEPLLNMTNVIPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 262 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++ +R+ +VPINRKY +E + + R Y SNA R+T EYVML +ND A L Sbjct: 263 APNDAIRDQIVPINRKYNIETFLASVRRYLEKSNANQGRVTVEYVMLDHVNDGTEHAHQL 322 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + LK P KINLIP+NP+PG + S I FS+ + G++ +R RG DI AAC Sbjct: 323 AECLKDTPCKINLIPWNPFPGAPFGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAAC 382 Query: 363 GQL 365 GQL Sbjct: 383 GQL 385 >gi|315634916|ref|ZP_07890198.1| cfr family radical SAM enzyme [Aggregatibacter segnis ATCC 33393] gi|315476468|gb|EFU67218.1| cfr family radical SAM enzyme [Aggregatibacter segnis ATCC 33393] Length = 384 Score = 280 bits (717), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 154/363 (42%), Positives = 214/363 (58%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R ++ E ++G R Q+ KWIY G +F M+++++++R L Sbjct: 16 KKVNLMNLTRAQMREFFAELG----EKPFRADQLVKWIYHFGEDNFDNMTNLNKKLREKL 71 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC Sbjct: 72 KSVAEIKAPEVAVEQRSADGTIKWAMQV------GDQQVETVYIPEADRATLCVSSQVGC 125 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F + G+ R I+N+VM Sbjct: 126 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 175 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH Sbjct: 176 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 235 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ +VP+N+KY ++ LID+ Y +SNA ++T EYVML +ND A L Sbjct: 236 APNDELRDEIVPLNKKYNIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHVNDHVEHAHQL 295 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+P Y S I F + + G + +R RG DI AAC Sbjct: 296 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGLTVIVRKTRGDDIDAAC 355 Query: 363 GQL 365 GQL Sbjct: 356 GQL 358 >gi|260221248|emb|CBA29622.1| Ribosomal RNA large subunit methyltransferase N [Curvibacter putative symbiont of Hydra magnipapillata] Length = 466 Score = 280 bits (717), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 147/336 (43%), Positives = 200/336 (59%), Gaps = 17/336 (5%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 + R +Q+++W++ +G F MSD+++ +R L H + ++ + IS DGT KWL Sbjct: 24 KFRATQLFRWVHQKGASQFDDMSDLAKSLRDKLRGHAEVRALPVITQHISADGTIKWLFD 83 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 +G +ETV+IPE RGTLC+SSQ GC++ C FC TG Q RNL EIL Q+ Sbjct: 84 -----VGNGDAVETVFIPESDRGTLCISSQAGCAVGCRFCSTGHQGFSRNLKTWEILAQL 138 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A L G D R ISN+VMMGMGEPL N+ + +L + D G Sbjct: 139 WFAEHFLRSHLGVSD----------RVISNVVMMGMGEPLQNYVALVPALKVMLDDHGYG 188 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S+RR+T+STSG VP + R+GE+ V LA+SLHA + LR+ LVP+NRKYPL+ L++ACR Sbjct: 189 LSRRRVTVSTSGVVPMMDRLGEDCPVALAVSLHAPEDSLRDNLVPLNRKYPLKELMEACR 248 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK--GIPAKINLIPFNPWPGCEYLCS 329 Y + ITFEY ML G+ND P A L++++K G+P K NLIPFNP+P L S Sbjct: 249 RYLAHAPRDFITFEYCMLDGVNDHPEHAKLLLQLVKESGVPCKFNLIPFNPFPASGLLRS 308 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + F+ + G + IR RG DI AACGQL Sbjct: 309 SNNAVQAFARILVDGGLVTTIRKTRGDDIDAACGQL 344 >gi|83720408|ref|YP_442753.1| radical SAM protein [Burkholderia thailandensis E264] gi|167619819|ref|ZP_02388450.1| radical SAM enzyme, Cfr family protein [Burkholderia thailandensis Bt4] gi|123753780|sp|Q2SWE6|RLMN_BURTA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|83654233|gb|ABC38296.1| radical SAM enzyme, Cfr family [Burkholderia thailandensis E264] Length = 378 Score = 280 bits (717), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 147/342 (42%), Positives = 207/342 (60%), Gaps = 16/342 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ DF GM+D+++ +R L I P+I+ + +S DGTRKWL+ Sbjct: 29 FRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRAVIGTPDILSDHVSADGTRKWLIN- 87 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q RNL+ EI+ Q+ Sbjct: 88 ----VGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLR 143 Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 +A R+ LG PG R I+N+VMMGMGEPL N+ V ++ + D Sbjct: 144 MAEFALRASLGRAPGPNG-------KAERVITNVVMMGMGEPLLNYSAVVPAMRLMLDDN 196 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S+RR+TLSTSG VP + R+G E+ V LA+SLHA ++ LR+ LVP+N+K+PL L+ Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNKKHPLRELMA 256 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 AC+ Y ++ ITFEY ML G+ND+ A L+ + + +P K NLIPFNP+P L Sbjct: 257 ACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLALTRDVPCKFNLIPFNPFPESGLLR 316 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 S + I F++ + +G + IR RG DI AACGQL K Sbjct: 317 SKTEQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLAGAVK 358 >gi|197249479|ref|YP_002147478.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|254807201|sp|B5F1A0|RLMN_SALA4 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|197213182|gb|ACH50579.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 388 Score = 280 bits (717), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 162/383 (42%), Positives = 219/383 (57%), Gaps = 23/383 (6%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 N K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R Sbjct: 17 NKEAKINLLDLNRQQMREFFKNLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLR 72 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L + I PE+V+E+ S DGT KW + G +ETVYIPE R TLCVSSQ Sbjct: 73 GKLKEVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQ 126 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC+L C FC T Q RNL EI+ QV A ++G + G R I+N Sbjct: 127 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITN 176 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 +VMMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAI Sbjct: 177 VVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAI 236 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299 SLHA ++ +R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A Sbjct: 237 SLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHA 296 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI Sbjct: 297 HQLAELLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDID 356 Query: 360 AACGQLK-SLSKRIPKVPRQEMQ 381 AACGQL + R + R+ MQ Sbjct: 357 AACGQLAGDVIDRTKRTLRKRMQ 379 >gi|167581703|ref|ZP_02374577.1| radical SAM enzyme, Cfr family protein [Burkholderia thailandensis TXDOH] Length = 378 Score = 280 bits (717), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 147/342 (42%), Positives = 207/342 (60%), Gaps = 16/342 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ DF GM+D+++ +R L I P+I+ + +S DGTRKWL+ Sbjct: 29 FRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRAVIGTPDILSDHVSADGTRKWLIN- 87 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q RNL+ EI+ Q+ Sbjct: 88 ----VGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLR 143 Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 +A R+ LG PG R I+N+VMMGMGEPL N+ V ++ + D Sbjct: 144 MAEFALRASLGRAPGPNG-------KAERVITNVVMMGMGEPLLNYSAVVPAMRLMLDDN 196 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S+RR+TLSTSG VP + R+G E+ V LA+SLHA ++ LR+ LVP+N+K+PL L+ Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNKKHPLRELMA 256 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 AC+ Y ++ ITFEY ML G+ND+ A L+ + + +P K NLIPFNP+P L Sbjct: 257 ACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLALTRDVPCKFNLIPFNPFPESGLLR 316 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 S + I F++ + +G + IR RG DI AACGQL K Sbjct: 317 SKTEQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLAGAVK 358 >gi|16765845|ref|NP_461460.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167991834|ref|ZP_02572933.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|197263041|ref|ZP_03163115.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|81594911|sp|Q8ZN52|RLMN_SALTY RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|16421069|gb|AAL21419.1| putative Fe-S-cluster redox enzyme [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197241296|gb|EDY23916.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205329931|gb|EDZ16695.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261247721|emb|CBG25549.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994643|gb|ACY89528.1| hypothetical protein STM14_3097 [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159074|emb|CBW18588.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913512|dbj|BAJ37486.1| 23S rRNA methyltransferase N [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321222774|gb|EFX47845.1| Ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323130853|gb|ADX18283.1| radical SAM superfamily protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332989452|gb|AEF08435.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 388 Score = 280 bits (717), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 162/383 (42%), Positives = 219/383 (57%), Gaps = 23/383 (6%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 N K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R Sbjct: 17 NKETKINLLDLNRQQMREFFKNLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLR 72 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L + I PE+V+E+ S DGT KW + G +ETVYIPE R TLCVSSQ Sbjct: 73 GKLKEVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQ 126 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC+L C FC T Q RNL EI+ QV A ++G + G R I+N Sbjct: 127 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITN 176 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 +VMMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAI Sbjct: 177 VVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAI 236 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299 SLHA ++ +R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A Sbjct: 237 SLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHA 296 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI Sbjct: 297 HQLAELLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDID 356 Query: 360 AACGQLK-SLSKRIPKVPRQEMQ 381 AACGQL + R + R+ MQ Sbjct: 357 AACGQLAGDVIDRTKRTLRKRMQ 379 >gi|31789482|gb|AAP58595.1| conserved hypothetical protein [uncultured Acidobacteria bacterium] Length = 396 Score = 280 bits (717), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 146/335 (43%), Positives = 204/335 (60%), Gaps = 22/335 (6%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R +QI++WI+ R +GM+D+S+ +R L+ F++ P IV ++ S DGTRK +L Sbjct: 63 RFHATQIYRWIHRRAATSVEGMTDLSKALRTRLDHEFTLSTPRIVGDETSADGTRKLVLE 122 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 R IE+V+IP+ T CVS+QVGC++ C FC TG LVR+LTA EI QV Sbjct: 123 LADR-----RRIESVFIPDTPAMTFCVSTQVGCAMACGFCLTGKMGLVRHLTAGEIAGQV 177 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 +L G D + NIV+MGMGEPL N+DN K+L + GL+ Sbjct: 178 ----RVLASATGLLD-----------QSFNIVLMGMGEPLHNYDNTMKALRMLHAEAGLA 222 Query: 212 FSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 S RR+TLST G VP + R+ +E + LA+SLHA +++ R LVP NRKYPL ++DAC Sbjct: 223 VSPRRVTLSTVGIVPGLERLAKESLMPNLAVSLHATTDEQRTALVPPNRKYPLAAILDAC 282 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 R +P L RITFEYV+L+G+ND+P DA L+++L GI +K+NLIP NP PG + Sbjct: 283 RAFP-LKKRNRITFEYVLLEGVNDTPEDAKRLVRLLSGIKSKVNLIPLNPAPGIPFSRPP 341 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + F++ + R+ + +R RG DI AACGQL Sbjct: 342 DARVDRFADVLARAHLTVSVRKSRGRDIRAACGQL 376 >gi|115377093|ref|ZP_01464309.1| radical SAM enzyme, Cfr family [Stigmatella aurantiaca DW4/3-1] gi|310821316|ref|YP_003953674.1| ribosomal RNA large subunit methyltransferase n 2 [Stigmatella aurantiaca DW4/3-1] gi|115365932|gb|EAU64951.1| radical SAM enzyme, Cfr family [Stigmatella aurantiaca DW4/3-1] gi|309394388|gb|ADO71847.1| Ribosomal RNA large subunit methyltransferase N 2 [Stigmatella aurantiaca DW4/3-1] Length = 381 Score = 280 bits (717), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 153/338 (45%), Positives = 211/338 (62%), Gaps = 17/338 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD-EKISCDGTRKWLLR 91 R Q+++W++ RG+ F M+D+S+ +R L + I+ P + D E++S DGT K+ R Sbjct: 46 FRAGQVYRWLHQRGVTSFDEMTDLSKALRQKLKEQAEIV-PLVKDLEQVSIDGTIKY--R 102 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 F R G IE+VY+P + R TLCVS+QVGC++ CSFC TGT L RNLT EI+ QV Sbjct: 103 FKTR--DGRF-IESVYMPSEDRKTLCVSTQVGCAMKCSFCMTGTLGLKRNLTPGEIVAQV 159 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 + G E R +SN+V MGMGEPL NF+N+K +LSI G + Sbjct: 160 HTVNREVRAREGLETY---------RPLSNLVFMGMGEPLHNFENLKTALSILQSQDGPN 210 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 FS R IT+ST G VP I R G+E V LAISL+A +++ RN +P+NRK+ +E L++ACR Sbjct: 211 FSHRHITVSTVGLVPMIERFGQETDVKLAISLNASTDEQRNQTMPVNRKWNIEALLEACR 270 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 +P L RRITFEYV+L+G NDS DA LI++L+GIPAK+NLIP+N PG + + + Sbjct: 271 KFP-LRQGRRITFEYVLLRGFNDSDEDAYRLIELLRGIPAKVNLIPYNENPGLGFHTTGE 329 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369 + F + ++ IR RG DI ACGQL + S Sbjct: 330 ERAEQFRAILAEGHIAAFIRQNRGRDIAGACGQLANRS 367 >gi|145636367|ref|ZP_01792036.1| hypothetical protein CGSHiHH_07816 [Haemophilus influenzae PittHH] gi|148825353|ref|YP_001290106.1| ribosomal RNA large subunit methyltransferase N [Haemophilus influenzae PittEE] gi|145270532|gb|EDK10466.1| hypothetical protein CGSHiHH_07816 [Haemophilus influenzae PittHH] gi|148715513|gb|ABQ97723.1| hypothetical protein CGSHiEE_01185 [Haemophilus influenzae PittEE] Length = 383 Score = 280 bits (717), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 156/363 (42%), Positives = 214/363 (58%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L Sbjct: 14 KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 69 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC Sbjct: 70 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F + G+ R I+N+VM Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ +VPIN+KY ++ LID+ Y +SNA ++T EYVML +ND A L Sbjct: 234 APNDELRDEIVPINKKYNIKTLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK P KINLIP+NP+P Y S I F + + ++ IR RG DI AAC Sbjct: 294 ADVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAAC 353 Query: 363 GQL 365 GQL Sbjct: 354 GQL 356 >gi|205829858|sp|A5UAC2|RLMN_HAEIE RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|309972476|gb|ADO95677.1| 23S rRNA m(2)A2503 methyltransferase, SAM-dependent [Haemophilus influenzae R2846] Length = 390 Score = 280 bits (717), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 156/363 (42%), Positives = 214/363 (58%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L Sbjct: 21 KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 76 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC Sbjct: 77 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 130 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F + G+ R I+N+VM Sbjct: 131 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH Sbjct: 181 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 240 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ +VPIN+KY ++ LID+ Y +SNA ++T EYVML +ND A L Sbjct: 241 APNDELRDEIVPINKKYNIKTLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQL 300 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK P KINLIP+NP+P Y S I F + + ++ IR RG DI AAC Sbjct: 301 ADVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAAC 360 Query: 363 GQL 365 GQL Sbjct: 361 GQL 363 >gi|161502321|ref|YP_001569433.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|205829874|sp|A9MHL3|RLMN_SALAR RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|160863668|gb|ABX20291.1| hypothetical protein SARI_00353 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 388 Score = 280 bits (716), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 162/383 (42%), Positives = 219/383 (57%), Gaps = 23/383 (6%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 N K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R Sbjct: 17 NNEAKINLLDLNRQQMREFFKNLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLR 72 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L + I PE+V+E+ S DGT KW + G +ETVYIPE R TLCVSSQ Sbjct: 73 GKLKEVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQ 126 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC+L C FC T Q RNL EI+ QV A ++G + G R I+N Sbjct: 127 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITN 176 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 +VMMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAI Sbjct: 177 VVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAI 236 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299 SLHA ++ +R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A Sbjct: 237 SLHAPNDAIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHA 296 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI Sbjct: 297 HQLAELLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDID 356 Query: 360 AACGQLK-SLSKRIPKVPRQEMQ 381 AACGQL + R + R+ MQ Sbjct: 357 AACGQLAGDVIDRTKRTLRKRMQ 379 >gi|332284656|ref|YP_004416567.1| hypothetical protein PT7_1403 [Pusillimonas sp. T7-7] gi|330428609|gb|AEC19943.1| hypothetical protein PT7_1403 [Pusillimonas sp. T7-7] Length = 386 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 153/353 (43%), Positives = 209/353 (59%), Gaps = 19/353 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +W++ RG F M+D+++E R L +H SI P + E+ S DGTRKWL Sbjct: 29 FRAKQLQRWVHQRGADSFDDMTDLAREFRLQLAEHCSIAAPPVSIEQRSADGTRKWLFD- 87 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +E V+IPE RGTLC+SSQ GC++ C FC TG Q RNLT EI+ Q+ Sbjct: 88 ----VGKNNAVEAVFIPEDDRGTLCISSQAGCTVACPFCSTGYQGFNRNLTTAEIIGQLW 143 Query: 153 LARSLL-GDFPGCEDI--EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209 AR +L D + E P R ISN+VMMGMGEPL N+D V +L + D Sbjct: 144 HARRVLQSDMQSARTVSTETQTAPDPARVISNVVMMGMGEPLLNYDQVLGALRLMLDDNA 203 Query: 210 LSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 S+RR+T+STSG VP + R+G + V LA+SLHA ++ LR+ LVP+NRK+PL L+ A Sbjct: 204 YGLSRRRVTVSTSGVVPMMDRLGRDCPVALAVSLHAPNDALRDKLVPLNRKHPLAELLAA 263 Query: 270 CRHYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL 327 C Y L +A R ITFEY+ML G+ND+ + A LI I + + K NLIPFNP+P Sbjct: 264 CNRY--LEHAPRDFITFEYIMLDGVNDTDQHARELITIAQQVRCKFNLIPFNPFPQSGLK 321 Query: 328 CSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS-------LSKRIP 373 S + F++ + +G + +R RG DI AACGQL +S+R+P Sbjct: 322 RSPAARVRLFAQRLMDAGIVTTVRKTRGDDIAAACGQLAGDVKDRTRISQRLP 374 >gi|77164417|ref|YP_342942.1| hypothetical protein Noc_0900 [Nitrosococcus oceani ATCC 19707] gi|254434279|ref|ZP_05047787.1| radical SAM enzyme, Cfr family [Nitrosococcus oceani AFC27] gi|123744359|sp|Q3JCN4|RLMN_NITOC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|76882731|gb|ABA57412.1| 23S rRNA m(2)A-2503 methyltransferase [Nitrosococcus oceani ATCC 19707] gi|207090612|gb|EDZ67883.1| radical SAM enzyme, Cfr family [Nitrosococcus oceani AFC27] Length = 372 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 161/349 (46%), Positives = 212/349 (60%), Gaps = 19/349 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ R + DF M+D+++ +R L + I PEI+ + S DGT KWLLR Sbjct: 28 FRARQVLRWIHQRFVTDFSAMTDLNKSLRERLTESAVISLPEIIKQHRSADGTHKWLLR- 86 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + G IETV+IPE RGTLC+SSQ+GC L CSFC TG Q RNL EI+ Q+ Sbjct: 87 ----MHGNNCIETVFIPEGDRGTLCISSQIGCILDCSFCATGKQGFNRNLAVSEIIGQLW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 LA LG P E I I+N+VMMGMGEPL NF+NV ++++ D Sbjct: 143 LANKTLGRDPKGERI-----------ITNVVMMGMGEPLANFNNVVTAMNLMLDDFSYGL 191 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S RR+TLST+G VP + R+ V LA+SLHA ++ LR+ LVP+N+KYPL+ L+ ACR Sbjct: 192 SWRRVTLSTAGMVPAMDRLRAVCPVNLAVSLHAPTDKLRDELVPLNKKYPLQDLLSACRR 251 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y R +TFEYVML G+NDS A L+++L+G+PAK+NLIPFNP+ G Y SD Sbjct: 252 YVAGDRRRAVTFEYVMLAGVNDSLPHARALLRLLRGLPAKVNLIPFNPFSGSVYRRSDAA 311 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQ 381 I F E + R G + R RG DI AACGQ L+ R+ R+ M Sbjct: 312 TIDRFREELLRGGIMTVTRKTRGDDIAAACGQ---LAGRVQDRTRRTMD 357 >gi|293391771|ref|ZP_06636105.1| cfr family radical SAM enzyme [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952305|gb|EFE02424.1| cfr family radical SAM enzyme [Aggregatibacter actinomycetemcomitans D7S-1] Length = 379 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 155/363 (42%), Positives = 213/363 (58%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R ++ E ++G R Q+ KWIY G +F M+++++ +R L Sbjct: 11 KKVNLMNLTRAQMREFFAELG----EKPFRADQLVKWIYHFGEDNFDNMTNLNKALREKL 66 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC Sbjct: 67 KTMAEIKAPEVAVEQRSADGTIKWAMQV------GDQQVETVYIPEADRATLCVSSQVGC 120 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F + G+ R I+N+VM Sbjct: 121 ALACTFCSTAQQGFNRNLTVAEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 170 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH Sbjct: 171 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 230 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ +VP+N+KY ++ LID+ Y +SNA ++T EYVML IND A L Sbjct: 231 APNDELRDEIVPLNKKYNIKNLIDSVNRYLSVSNANHGKVTIEYVMLDHINDHVEHAHQL 290 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+P Y S I F + + G + +R RG DI AAC Sbjct: 291 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGLTVIVRKTRGDDIDAAC 350 Query: 363 GQL 365 GQL Sbjct: 351 GQL 353 >gi|167893945|ref|ZP_02481347.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei 7894] gi|167918665|ref|ZP_02505756.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei BCC215] Length = 378 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 146/342 (42%), Positives = 207/342 (60%), Gaps = 16/342 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ DF GM+D+++ +R L I P+I+ + +S DGTRKWL+ Sbjct: 29 FRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRAVIGTPDILSDHVSADGTRKWLIN- 87 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q RNL+ EI+ Q+ Sbjct: 88 ----VGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLR 143 Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 +A R+ LG PG R I+N+VMMGMGEPL N+ V ++ + D Sbjct: 144 MAEFALRASLGRAPGPNG-------KAERVITNVVMMGMGEPLLNYSAVVPAMRLMLDDN 196 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S+RR+TLSTSG VP + R+G E+ V LA+SLHA ++ LR+ LVP+N+K+PL L+ Sbjct: 197 AYGLSRRRVTLSTSGVVPMMERLGAELPVALAVSLHAPNDALRDELVPLNKKHPLRELMA 256 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 AC+ Y ++ ITFEY ML G+ND+ A L+ + + +P K NLIPFNP+P + Sbjct: 257 ACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRDVPCKFNLIPFNPFPESGLVR 316 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 S + I F++ + +G + IR RG DI AACGQL K Sbjct: 317 SKTEQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLAGAVK 358 >gi|322515331|ref|ZP_08068328.1| cfr family radical SAM enzyme [Actinobacillus ureae ATCC 25976] gi|322118707|gb|EFX90919.1| cfr family radical SAM enzyme [Actinobacillus ureae ATCC 25976] Length = 393 Score = 280 bits (715), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 155/363 (42%), Positives = 216/363 (59%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+E+ E ++ R Q+ KWIY G +F MS+I++ +R L Sbjct: 25 EKINLMNLTRQEMRELFAEMD----EKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKL 80 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q I PE+ E+ S DGT KW ++ G +IETVYIPE R TLCVSSQVGC Sbjct: 81 KQIAEIKAPEVSVEQRSSDGTIKWAMQV------GDQQIETVYIPEADRATLCVSSQVGC 134 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNLT EI+ QV A ++G+F + G+ R I+N+VM Sbjct: 135 ALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 184 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D SKRR+TLST+G VP + E+I V LAISLH Sbjct: 185 MGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPAFDIMREKIDVALAISLH 244 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ ++PIN+KY ++ML+D+ Y +SNA ++T EYV+L +ND A L Sbjct: 245 APNDELRDEIMPINKKYNIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQL 304 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+P Y S + F + + G++ +R RG DI AAC Sbjct: 305 AEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAAC 364 Query: 363 GQL 365 GQL Sbjct: 365 GQL 367 >gi|158522322|ref|YP_001530192.1| radical SAM protein [Desulfococcus oleovorans Hxd3] gi|205829745|sp|A8ZV25|RLMN_DESOH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|158511148|gb|ABW68115.1| radical SAM enzyme, Cfr family [Desulfococcus oleovorans Hxd3] Length = 371 Score = 280 bits (715), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 153/339 (45%), Positives = 207/339 (61%), Gaps = 22/339 (6%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93 R Q++KW++V F M++IS+ VR LL + F I +I + S DGTRK+L Sbjct: 49 RADQVFKWLFVHRAESFDQMTNISKPVRTLLAESFIIGRLKIARTQQSADGTRKYLFE-- 106 Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153 + IE+V IPE+ TLCVS+QVGC+ C+FC T + VRNLT EI QVL Sbjct: 107 ---LSDGEHIESVLIPEEDHFTLCVSTQVGCAQGCAFCMTAKKGFVRNLTPAEITGQVLG 163 Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL-SIASDSMGLSF 212 A L P +++NIV+MGMGEPL N+DNV SL +I GL F Sbjct: 164 ALKTLA-------------PE--ERLTNIVLMGMGEPLANYDNVITSLDTICDGDCGLQF 208 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S RR+TLSTSG VP +A +G V LA+SL+A N R++L+PIN+ YP+E+L++ACR Sbjct: 209 STRRVTLSTSGLVPRMAPLGLATTVNLAVSLNATDNKTRDMLMPINKTYPIEVLLEACRT 268 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 YP LSN R+ITFEY+++ G+NDS +DAL L+K+L+ I AK+NLIPFN G + D Sbjct: 269 YP-LSNRRKITFEYILMAGVNDSEKDALRLVKLLRSIKAKVNLIPFNEHEGAAFKRPDDA 327 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 I F + + Y+ R +G DI AACGQL + K+ Sbjct: 328 AIERFKQILHDRQYTVMTRQSKGADISAACGQLAADIKK 366 >gi|113868341|ref|YP_726830.1| Fe-S-cluster redox protein [Ralstonia eutropha H16] gi|123032871|sp|Q0K959|RLMN_RALEH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|113527117|emb|CAJ93462.1| Predicted Fe-S-cluster redox enzyme [Ralstonia eutropha H16] Length = 384 Score = 280 bits (715), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 147/333 (44%), Positives = 202/333 (60%), Gaps = 12/333 (3%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ G F MSD+++ +R L I P + + +S DGTRKWLL Sbjct: 27 FRARQLQRWIHHYGASRFDAMSDLAKSLREKLATRAEIRAPAAITDHLSADGTRKWLLD- 85 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETVYIPE++RGTLCVSSQ GC++ C FC TG Q RNL+ EI+ Q+ Sbjct: 86 ----VGQGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIIGQLW 141 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 +A + + G G P R ISN+VMMGMGEPL N+D V ++ + D Sbjct: 142 MAEFAMREQLG----RG---PKDDRVISNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGL 194 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+TLSTSG VP + R+ +++ V LA+SLHA ++ LR++LVP+N+KYPL L+ ACR Sbjct: 195 SRRRVTLSTSGVVPMMDRLSKDLPVALAVSLHASNDALRDVLVPLNKKYPLAELMAACRR 254 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + ITFEY ML G+ND A L+K++ +P K NLIPFNP+P S+ Sbjct: 255 YLEFAPRDFITFEYCMLDGVNDGVEHARELLKLVADVPCKFNLIPFNPFPESGLKRSNND 314 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F++ + +G + IR RG DI AACGQL Sbjct: 315 QIRRFAQVLMDAGIVTTIRKTRGDDIDAACGQL 347 >gi|53719145|ref|YP_108131.1| hypothetical protein BPSL1511 [Burkholderia pseudomallei K96243] gi|53723553|ref|YP_103007.1| radical SAM protein [Burkholderia mallei ATCC 23344] gi|67639886|ref|ZP_00438715.1| radical SAM enzyme, Cfr family [Burkholderia mallei GB8 horse 4] gi|76811596|ref|YP_333752.1| radical SAM protein [Burkholderia pseudomallei 1710b] gi|121600638|ref|YP_993156.1| radical SAM protein [Burkholderia mallei SAVP1] gi|124383540|ref|YP_001026069.1| radical SAM protein [Burkholderia mallei NCTC 10229] gi|126440813|ref|YP_001059227.1| radical SAM protein [Burkholderia pseudomallei 668] gi|126450494|ref|YP_001080663.1| radical SAM protein [Burkholderia mallei NCTC 10247] gi|126453816|ref|YP_001066494.1| radical SAM protein [Burkholderia pseudomallei 1106a] gi|134277659|ref|ZP_01764374.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 305] gi|167002245|ref|ZP_02268035.1| radical SAM enzyme, Cfr family [Burkholderia mallei PRL-20] gi|167738262|ref|ZP_02411036.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei 14] gi|167815452|ref|ZP_02447132.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei 91] gi|167845403|ref|ZP_02470911.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei B7210] gi|167902394|ref|ZP_02489599.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei NCTC 13177] gi|167910636|ref|ZP_02497727.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei 112] gi|217421523|ref|ZP_03453027.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 576] gi|242316984|ref|ZP_04816000.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1106b] gi|254177964|ref|ZP_04884619.1| radical SAM enzyme, Cfr family [Burkholderia mallei ATCC 10399] gi|254179549|ref|ZP_04886148.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1655] gi|254189060|ref|ZP_04895571.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei Pasteur 52237] gi|254197853|ref|ZP_04904275.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei S13] gi|254199953|ref|ZP_04906319.1| radical SAM enzyme, Cfr family [Burkholderia mallei FMH] gi|254206286|ref|ZP_04912638.1| radical SAM enzyme, Cfr family [Burkholderia mallei JHU] gi|254259301|ref|ZP_04950355.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1710a] gi|254297426|ref|ZP_04964879.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 406e] gi|81379862|sp|Q63UT5|RLMN_BURPS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|81604959|sp|Q62JW2|RLMN_BURMA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123744447|sp|Q3JRQ1|RLMN_BURP1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829680|sp|A3MK77|RLMN_BURM7 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829681|sp|A2S2A0|RLMN_BURM9 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829682|sp|A1V4K3|RLMN_BURMS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829683|sp|A3NVX3|RLMN_BURP0 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829684|sp|A3NA56|RLMN_BURP6 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|52209559|emb|CAH35512.1| conserved hypothetical protein [Burkholderia pseudomallei K96243] gi|52426976|gb|AAU47569.1| radical SAM enzyme, Cfr family [Burkholderia mallei ATCC 23344] gi|76581049|gb|ABA50524.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1710b] gi|121229448|gb|ABM51966.1| radical SAM enzyme, Cfr family [Burkholderia mallei SAVP1] gi|124291560|gb|ABN00829.1| radical SAM enzyme, Cfr family [Burkholderia mallei NCTC 10229] gi|126220306|gb|ABN83812.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 668] gi|126227458|gb|ABN90998.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1106a] gi|126243364|gb|ABO06457.1| radical SAM enzyme, Cfr family [Burkholderia mallei NCTC 10247] gi|134251309|gb|EBA51388.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 305] gi|147749549|gb|EDK56623.1| radical SAM enzyme, Cfr family [Burkholderia mallei FMH] gi|147753729|gb|EDK60794.1| radical SAM enzyme, Cfr family [Burkholderia mallei JHU] gi|157807225|gb|EDO84395.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 406e] gi|157936739|gb|EDO92409.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei Pasteur 52237] gi|160699003|gb|EDP88973.1| radical SAM enzyme, Cfr family [Burkholderia mallei ATCC 10399] gi|169654594|gb|EDS87287.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei S13] gi|184210089|gb|EDU07132.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1655] gi|217395265|gb|EEC35283.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 576] gi|238520497|gb|EEP83956.1| radical SAM enzyme, Cfr family [Burkholderia mallei GB8 horse 4] gi|242140223|gb|EES26625.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1106b] gi|243062062|gb|EES44248.1| radical SAM enzyme, Cfr family [Burkholderia mallei PRL-20] gi|254217990|gb|EET07374.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1710a] Length = 378 Score = 280 bits (715), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 146/342 (42%), Positives = 207/342 (60%), Gaps = 16/342 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ DF GM+D+++ +R L I P+I+ + +S DGTRKWL+ Sbjct: 29 FRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRAVIGTPDILSDHVSADGTRKWLIN- 87 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q RNL+ EI+ Q+ Sbjct: 88 ----VGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLR 143 Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 +A R+ LG PG R I+N+VMMGMGEPL N+ V ++ + D Sbjct: 144 MAEFALRASLGRAPGPNG-------KAERVITNVVMMGMGEPLLNYSAVVPAMRLMLDDN 196 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S+RR+TLSTSG VP + R+G E+ V LA+SLHA ++ LR+ LVP+N+K+PL L+ Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNKKHPLRELMA 256 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 AC+ Y ++ ITFEY ML G+ND+ A L+ + + +P K NLIPFNP+P + Sbjct: 257 ACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRDVPCKFNLIPFNPFPESGLVR 316 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 S + I F++ + +G + IR RG DI AACGQL K Sbjct: 317 SKTEQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLAGAVK 358 >gi|167836392|ref|ZP_02463275.1| radical SAM enzyme, Cfr family protein [Burkholderia thailandensis MSMB43] Length = 378 Score = 280 bits (715), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 145/337 (43%), Positives = 206/337 (61%), Gaps = 16/337 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ DF GM+D+++ +R L I P+I+ + +S DGTRKWL+ Sbjct: 29 FRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRAVIGTPDILSDHVSADGTRKWLIN- 87 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q RNL+ EI+ Q+ Sbjct: 88 ----VGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLR 143 Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 +A R+ LG PG R ++N+VMMGMGEPL N+ V ++ + D Sbjct: 144 MAEFALRASLGRAPGPNG-------KAERVVTNVVMMGMGEPLLNYSAVVPAMRLMLDDN 196 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S+RR+TLSTSG VP + R+G E+ V LA+SLHA ++ LR+ LVP+NRK+PL L+ Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNRKHPLRELMA 256 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 AC+ Y ++ ITFEY ML G+ND+ A L+ + + +P K NLIPFNP+P + Sbjct: 257 ACQRYLKVAPRDFITFEYCMLDGVNDTQAHARELLALTRDVPCKFNLIPFNPFPESGLVR 316 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 S + I F++ + +G + IR RG DI AACGQL Sbjct: 317 SKTEQIKRFAQVLIDAGIVTTIRKTRGDDIDAACGQL 353 >gi|254358299|ref|ZP_04974572.1| radical SAM enzyme, Cfr family [Burkholderia mallei 2002721280] gi|148027426|gb|EDK85447.1| radical SAM enzyme, Cfr family [Burkholderia mallei 2002721280] Length = 378 Score = 280 bits (715), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 146/342 (42%), Positives = 207/342 (60%), Gaps = 16/342 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ DF GM+D+++ +R L I P+I+ + +S DGTRKWL+ Sbjct: 29 FRAKQLQRWIHQYNADDFDGMTDLAKSLREKLKGRAVIGTPDILSDHVSADGTRKWLIN- 87 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q RNL+ EI+ Q+ Sbjct: 88 ----VGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLR 143 Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 +A R+ LG PG R I+N+VMMGMGEPL N+ V ++ + D Sbjct: 144 MAEFALRASLGRAPGPNG-------KAERVITNVVMMGMGEPLLNYSAVVPAMRLMLDDN 196 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S+RR+TLSTSG VP + R+G E+ V LA+SLHA ++ LR+ LVP+N+K+PL L+ Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNKKHPLRELMA 256 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 AC+ Y ++ ITFEY ML G+ND+ A L+ + + +P K NLIPFNP+P + Sbjct: 257 ACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRDVPCKFNLIPFNPFPESGLVR 316 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 S + I F++ + +G + IR RG DI AACGQL K Sbjct: 317 SKTEQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLAGAVK 358 >gi|261868678|ref|YP_003256600.1| ribosomal RNA large subunit methyltransferase N [Aggregatibacter actinomycetemcomitans D11S-1] gi|261414010|gb|ACX83381.1| hypothetical protein D11S_2027 [Aggregatibacter actinomycetemcomitans D11S-1] Length = 379 Score = 279 bits (714), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 155/363 (42%), Positives = 212/363 (58%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R ++ E ++G R Q+ KWIY G +F M+++++ +R L Sbjct: 11 KKVNLMNLTRAQMREFFAELG----EKPFRADQLVKWIYHFGEDNFDNMTNLNKALREKL 66 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC Sbjct: 67 KTMAEIKAPEVAVEQRSADGTIKWAMQV------GDQQVETVYIPEADRTTLCVSSQVGC 120 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F + G+ R I+N+VM Sbjct: 121 ALACTFCSTAQQGFNRNLTVAEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 170 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH Sbjct: 171 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 230 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ +VP+N+KY ++ LID+ Y +SNA ++T EYVML IND A L Sbjct: 231 APNDELRDEIVPLNKKYNIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHINDHVEHAHQL 290 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK P KINLIP+NP+P Y S I F + + G + +R RG DI AAC Sbjct: 291 AAVLKNTPCKINLIPWNPFPQAPYAKSSNTRIDRFQKTLMEYGLTVIVRKTRGDDIDAAC 350 Query: 363 GQL 365 GQL Sbjct: 351 GQL 353 >gi|293415781|ref|ZP_06658424.1| cfr family radical SAM enzyme [Escherichia coli B185] gi|291433429|gb|EFF06408.1| cfr family radical SAM enzyme [Escherichia coli B185] Length = 384 Score = 279 bits (714), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 160/379 (42%), Positives = 219/379 (57%), Gaps = 23/379 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + G +ETVYIPE R TLCVSSQVGC+ Sbjct: 73 EMAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 126 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + G R I+N+VMM Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITNVVMM 176 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+ G Y S I FS+ + G+++ +R RG DI AACG Sbjct: 297 ELLKDTPCKINLIPWNPFLGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356 Query: 364 QLK-SLSKRIPKVPRQEMQ 381 QL + R + R+ MQ Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375 >gi|332639899|pdb|3RFA|A Chain A, X-Ray Structure Of Rlmn From Escherichia Coli In Complex With S- Adenosylmethionine gi|332639900|pdb|3RFA|B Chain B, X-Ray Structure Of Rlmn From Escherichia Coli In Complex With S- Adenosylmethionine Length = 404 Score = 279 bits (714), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 160/379 (42%), Positives = 219/379 (57%), Gaps = 23/379 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + G +ETVYIPE R TLCVSSQVGC+ Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 126 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + G R I+N+VMM Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITNVVMM 176 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AA G Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAAXG 356 Query: 364 QLK-SLSKRIPKVPRQEMQ 381 QL + R + R+ MQ Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375 >gi|145634639|ref|ZP_01790348.1| hypothetical protein CGSHiAA_05421 [Haemophilus influenzae PittAA] gi|229844547|ref|ZP_04464687.1| hypothetical protein CGSHi6P18H1_09535 [Haemophilus influenzae 6P18H1] gi|145268184|gb|EDK08179.1| hypothetical protein CGSHiAA_05421 [Haemophilus influenzae PittAA] gi|229812796|gb|EEP48485.1| hypothetical protein CGSHi6P18H1_09535 [Haemophilus influenzae 6P18H1] Length = 383 Score = 279 bits (714), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 156/363 (42%), Positives = 214/363 (58%), Gaps = 22/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L Sbjct: 14 KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 69 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC Sbjct: 70 KVVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F + G+ R I+N+VM Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ +VPIN+KY ++ LID+ Y +SNA ++T EYVML +ND A L Sbjct: 234 APNDELRDEIVPINKKYNIKTLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK P KINLIP+NP+P Y S I F + + ++ IR RG DI AAC Sbjct: 294 ADVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAAC 353 Query: 363 GQL 365 GQL Sbjct: 354 GQL 356 >gi|167719265|ref|ZP_02402501.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei DM98] Length = 378 Score = 279 bits (714), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 146/342 (42%), Positives = 207/342 (60%), Gaps = 16/342 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ DF GM+D+++ +R L I P+I+ + +S DGTRKWL+ Sbjct: 29 FRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRAVIGTPDILSDHVSADGTRKWLIN- 87 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q RNL+ EI+ Q+ Sbjct: 88 ----VGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLR 143 Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 +A R+ LG PG R I+N+VMMGMGEPL N+ V ++ + D Sbjct: 144 MAEFALRASLGRAPGPNG-------KAERVITNVVMMGMGEPLLNYSAVVPAMRLMLDDN 196 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S+RR+TLSTSG VP + R+G E+ V LA+SLHA ++ LR+ LVP+N+K+PL L+ Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNKKHPLRELMA 256 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 AC+ Y ++ ITFEY ML G+ND+ A L+ + + +P K NLIPFNP+P + Sbjct: 257 ACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRDVPCKFNLIPFNPFPESGLVR 316 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 S + I F++ + +G + IR RG DI AACGQL K Sbjct: 317 SKTEQIKRFAQILIDAGVVTTIRKTRGDDIDAACGQLAGAVK 358 >gi|238912645|ref|ZP_04656482.1| hypothetical protein SentesTe_16142 [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 388 Score = 279 bits (714), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 162/384 (42%), Positives = 219/384 (57%), Gaps = 23/384 (5%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 +N K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ + Sbjct: 16 LNNETKINLLDLNRQQMREFFKNLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVL 71 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L + I PE+V+E+ S DGT KW + G +ETVYIPE R TLCVSS Sbjct: 72 RGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSS 125 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC+L C FC T Q RNL EI+ QV A ++G + G R I+ Sbjct: 126 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPIT 175 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G I V LA Sbjct: 176 NVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGYMIDVALA 235 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRD 298 ISLHA ++ +R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND Sbjct: 236 ISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEH 295 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI Sbjct: 296 AHQLAELLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDI 355 Query: 359 LAACGQLK-SLSKRIPKVPRQEMQ 381 AACGQL + R + R+ MQ Sbjct: 356 DAACGQLAGDVIDRTKRTLRKRMQ 379 >gi|322831763|ref|YP_004211790.1| radical SAM enzyme, Cfr family [Rahnella sp. Y9602] gi|321166964|gb|ADW72663.1| radical SAM enzyme, Cfr family [Rahnella sp. Y9602] Length = 399 Score = 279 bits (713), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 157/362 (43%), Positives = 214/362 (59%), Gaps = 22/362 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E + +G R Q+ KW+Y DF+ M+DI++ +R L Sbjct: 31 KINLLDLNRKQMREFFINMG----EKPFRADQVMKWMYHYCSDDFEQMTDINKALREKLA 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+ E+ S DGT KW ++ +GG + +ETVYIP+ R TLCVSSQVGC+ Sbjct: 87 RVAEIRAPEVASEQRSTDGTIKWAIQ-----VGGQL-VETVYIPDGDRATLCVSSQVGCA 140 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC T Q RNL EI+ QV A ++G + G R I+N+VMM Sbjct: 141 LECTFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----AAKVAGT------RPITNVVMM 190 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 191 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++ +R+ +VPINRKY ++ + A Y SNA R+T EYVML IND A L Sbjct: 251 PNDAIRDEIVPINRKYNIDTFLAAVERYISKSNANQGRVTIEYVMLDHINDGTEHAHELA 310 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 + LK P KINLIP+NP+PG Y S I FS+ + G++ +R RG DI AACG Sbjct: 311 ERLKNTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTVIVRKTRGDDIDAACG 370 Query: 364 QL 365 QL Sbjct: 371 QL 372 >gi|148244511|ref|YP_001219205.1| Fe-S-cluster redox enzyme [Candidatus Vesicomyosocius okutanii HA] gi|205829924|sp|A5CX33|RLMN_VESOH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|146326338|dbj|BAF61481.1| Fe-S-cluster redox enzyme [Candidatus Vesicomyosocius okutanii HA] Length = 356 Score = 279 bits (713), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 153/363 (42%), Positives = 215/363 (59%), Gaps = 24/363 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K++L+ + ++ L + + +G ++H R T QI +WIY DF M + S+ +R Sbjct: 1 MNKQNLLSLNQDALNDFFVCLG--EKHYR--TKQIMQWIYKVHEFDFDKMFNFSKSLREE 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 LN+ I +P++V +K + D KW+L + IE VYIPEK RGTLC+SSQVG Sbjct: 57 LNKIACIEFPKVVKQKFALDKVIKWVL-----ALSEDNYIEMVYIPEKDRGTLCISSQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L C+FC TG Q +NLT EI+ QVL+A L S ++ISNIV Sbjct: 112 CALACTFCSTGMQGFNKNLTTAEIIAQVLIANKYLN--------------SKTKRISNIV 157 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MGMGEPL N V + + D + S+R++T+STSG VP+I R+ + V LAISL Sbjct: 158 FMGMGEPLLNEQAVYNACDLLLDDLAFGLSRRKVTISTSGIVPSILRMSKRTPVSLAISL 217 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGL-SNARRITFEYVMLKGINDSPRDALNL 302 HA +N LR+ LVP+N+KY +E L+ AC+ Y + R I FEYVMLK +NDS A L Sbjct: 218 HAPNNQLRDKLVPVNQKYSIEELLKACKVYLNAGTQERHILFEYVMLKDVNDSTEHANKL 277 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K+LK I AK+NLIPFN + +Y S+ + I F + + + G + +R RG DI AC Sbjct: 278 AKLLKAISAKVNLIPFNSFERTQYQSSNAQTIEKFQDILYQQGIRTMMRRTRGEDIDGAC 337 Query: 363 GQL 365 GQL Sbjct: 338 GQL 340 >gi|117619957|ref|YP_856292.1| hypothetical protein AHA_1756 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|205829708|sp|A0KJ41|RLMN_AERHH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|117561364|gb|ABK38312.1| radical SAM enzyme, Cfr family [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 367 Score = 278 bits (712), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 161/382 (42%), Positives = 218/382 (57%), Gaps = 28/382 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+ + +++G R Q+ KWIY G DF M+++++ +R L Sbjct: 5 KTNLLDLDRDAMRAFFVELG----EKPFRADQVMKWIYHFGCDDFDQMNNVNKVLRERLK 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I PE+ E+ S DGT KW L+ +GG E+ETVYIPE+ R TLCVSSQVGC+ Sbjct: 61 AIAEIRAPEVSREQRSSDGTIKWALQ-----VGGQ-EVETVYIPEEDRATLCVSSQVGCA 114 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G R I+N+VMM Sbjct: 115 LECKFCSTAQQGFNRNLKVSEIIGQVWRAAKIVGG---------------KRPITNVVMM 159 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N NV ++ + D G SKRR+T+STSG VP + +G++I V LAISLHA Sbjct: 160 GMGEPLLNLANVVPAMRLMMDDFGYGISKRRVTISTSGVVPALDMLGDQIDVALAISLHA 219 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++ LR+ ++PIN KY +E + R Y G SNA R+T EYV+L IND + A L Sbjct: 220 PNDKLRSEIMPINDKYNIEEFLAGVRRYLGKSNANGGRVTVEYVLLDHINDDMQHAHELA 279 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+LK P+KINLIPFNP+PG Y I FS+ + G++ +R RG DI AACG Sbjct: 280 KVLKDTPSKINLIPFNPFPGNPYGKPSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAACG 339 Query: 364 QL-KSLSKRIPKVPRQEMQITG 384 QL + R + + MQ G Sbjct: 340 QLVGEVIDRTKRTMKNRMQQDG 361 >gi|309782324|ref|ZP_07677051.1| radical SAM enzyme, Cfr family [Ralstonia sp. 5_7_47FAA] gi|308918942|gb|EFP64612.1| radical SAM enzyme, Cfr family [Ralstonia sp. 5_7_47FAA] Length = 383 Score = 278 bits (712), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 145/337 (43%), Positives = 206/337 (61%), Gaps = 20/337 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ G DF M+D+++ +R L +I P ++ + +S DGTRKWL+ Sbjct: 27 FRAKQLQRWIHQSGASDFGEMTDLAKSLREKLATRANIQAPAVITDHLSSDGTRKWLVD- 85 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETVYIPE++RGTLCVSSQ GC++ C FC TG Q RNL+ EI+ Q+ Sbjct: 86 ----VGQGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIIGQLW 141 Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 +A R LG P + R I+N+VMMGMGEPL N+D V +L++ D Sbjct: 142 MAEFAMRKQLGRGPKDD-----------RVITNVVMMGMGEPLLNYDAVVPALALMLDDN 190 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S+RR+T+STSG VP + R+ ++ V LA+SLHA ++ LR++LVP+N+KYPL L+ Sbjct: 191 AYGLSRRRVTVSTSGVVPMMDRLARDVPVALAVSLHASNDALRDVLVPLNKKYPLAELMA 250 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 AC Y + ITFEY ML G+ND+ A L++++ +P K NLIPFNP+P Sbjct: 251 ACCRYLEFAPRDFITFEYCMLDGVNDTVEHARELLRVVADVPCKFNLIPFNPFPESGLKR 310 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 S+ + I FS+ + +G + IR RG DI AACGQL Sbjct: 311 SNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDAACGQL 347 >gi|237807659|ref|YP_002892099.1| ribosomal RNA large subunit methyltransferase N [Tolumonas auensis DSM 9187] gi|259491997|sp|C4LC34|RLMN_TOLAT RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|237499920|gb|ACQ92513.1| radical SAM enzyme, Cfr family [Tolumonas auensis DSM 9187] Length = 373 Score = 278 bits (712), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 158/357 (44%), Positives = 210/357 (58%), Gaps = 22/357 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI KWIY G DF M+++++ +R L + I PEI E+ S DGT KW +R Sbjct: 29 FRADQIMKWIYHFGCDDFSQMTNVNKALREKLARIAEIRAPEISTEQRSSDGTIKWAMRV 88 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G E+ETVYIPE R TLCVSSQVGC+L C FC TG Q RNLT EI+ QV Sbjct: 89 ------GDQEVETVYIPEADRATLCVSSQVGCALECKFCSTGQQGFNRNLTVSEIIGQVW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A ++G FP + R I+N+VMMGMGEPL N N+ +LS+ + G Sbjct: 143 RAAQVVG-FPK---------DTGKRVITNVVMMGMGEPLLNLSNLVPALSLMMEDFGFGL 192 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 SKRR+T+STSG VP + ++G+ I V LAISLHA ++ LR+ ++PIN KY ++ + + + Sbjct: 193 SKRRVTVSTSGVVPALDKLGDMIDVALAISLHAPNDKLRSEIMPINDKYNIQEFLGSVQR 252 Query: 273 YPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 Y SNA R+T EYV+L +ND A L ++LK P+KINLIPFNP+P Y Sbjct: 253 YLSKSNANHGRVTVEYVLLDHVNDDMEHARELAELLKDTPSKINLIPFNPFPSNPYGKPS 312 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK----SLSKRIPKVPRQEMQIT 383 + FS+ + GY+ +R RG DI AACGQL +KR K QE +I+ Sbjct: 313 NSRVDRFSKVLMEYGYTVIVRKTRGDDIDAACGQLVGDVIDRTKRTMKKRMQEQEIS 369 >gi|95929456|ref|ZP_01312199.1| conserved hypothetical protein [Desulfuromonas acetoxidans DSM 684] gi|95134572|gb|EAT16228.1| conserved hypothetical protein [Desulfuromonas acetoxidans DSM 684] Length = 342 Score = 278 bits (712), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 160/366 (43%), Positives = 218/366 (59%), Gaps = 34/366 (9%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K L +EL E L +G R R Q+ +WIY RG+ D M+D+S+ +R Sbjct: 1 MEKLDLKNFSPDELLEFLSGMG----KERFRCEQLLRWIYKRGVTDLDEMTDLSKTLRAE 56 Query: 64 LNQ--HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSS 120 L + + S PE+V+ S DGTRK+L R + IETV IP + R TLC+SS Sbjct: 57 LKEKSYISDWQPEVVE--TSADGTRKYLFR-----LDDGQSIETVRIPMDNDRSTLCISS 109 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC++ C FC TG+ +RNLTA EI+ QV EG I+ Sbjct: 110 QVGCAMDCDFCVTGSFGFIRNLTAAEIVNQVCAVAK-----------EG--------SIN 150 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 NIV+MGMGEPL N DNV ++L I + G +S R++TLST G VP + +GE I V LA Sbjct: 151 NIVLMGMGEPLHNLDNVVRALKIFYAAAGFDYSSRKVTLSTCGLVPQMKELGERIVVNLA 210 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SL+A +N++R+ L+PINR+YPLE L+DACR +P +++ RRITFEY++++ +NDS DA Sbjct: 211 VSLNATTNEVRDKLMPINRRYPLEELMDACRRFP-MASHRRITFEYILIRDLNDSLADAK 269 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L+K++ GI KINLIPFN G Y C DQ I F + + R +G DI A Sbjct: 270 RLVKLMHGIRGKINLIPFNEHEGSPYRCPDQATIEAFQTYLLNRDIVAIRRASKGQDISA 329 Query: 361 ACGQLK 366 ACGQLK Sbjct: 330 ACGQLK 335 >gi|167569729|ref|ZP_02362603.1| radical SAM enzyme, Cfr family protein [Burkholderia oklahomensis C6786] Length = 378 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 146/342 (42%), Positives = 206/342 (60%), Gaps = 16/342 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ DF GM+D+++ +R L I P+I+ + +S DGTRKWL+ Sbjct: 29 FRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRAVIGTPDILSDHVSADGTRKWLIN- 87 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q RNL+ EI+ Q+ Sbjct: 88 ----VGSGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLR 143 Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 +A R+ LG PG R I+N+VMMGMGEPL N+ V ++ + D Sbjct: 144 MAEFALRASLGREPGPNG-------RADRVITNVVMMGMGEPLLNYSAVVPAMRLMLDDN 196 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S+RR+TLSTSG VP + ++G E+ V LA+SLHA ++ LR+ LVP+NRK+PL L+ Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDKLGAELPVALAVSLHAPNDALRDELVPLNRKHPLRELMA 256 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 AC+ Y ++ ITFEY ML G+ND+ A L+ + + +P K NLIPFNP+P + Sbjct: 257 ACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLALTRDVPCKFNLIPFNPFPESGLVR 316 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 S I F++ + +G + IR RG DI AACGQL K Sbjct: 317 SKPDQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLAGAVK 358 >gi|15616897|ref|NP_240110.1| hypothetical protein BU286 [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681651|ref|YP_002468037.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471340|ref|ZP_05635339.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11387286|sp|P57373|RLMN_BUCAI RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|25320166|pir||D84963 hypothetical protein [imported] - Buchnera sp. (strain APS) gi|10038961|dbj|BAB12996.1| hypothetical protein [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219624494|gb|ACL30649.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 363 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 157/364 (43%), Positives = 213/364 (58%), Gaps = 24/364 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K +L+ + R+ L+ L+ +G T Q+ WIY DF M +IS + R Sbjct: 12 ISKINLLDLNRQNLKYFLISLGAKN----FCTEQVMSWIYNYYCDDFNKMLNISIKTRKK 67 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L + I E ++EKIS DGT KW+ + +IETVY+PEK R TLCVSSQ+G Sbjct: 68 LYEKSYIFASEFIEEKISYDGTIKWITDINNQ------KIETVYMPEKKRSTLCVSSQIG 121 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 CSL C FC TG + RNL EI+ Q+ A L + ++ + I+NIV Sbjct: 122 CSLKCHFCATGQEGFQRNLKVSEIIAQIWQANKRLKE------------KNIKKNITNIV 169 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MGMGEPL N NV +L+I D G SKRR+TLSTSG VP + ++ I V LAISL Sbjct: 170 FMGMGEPLLNLKNVVSALTIILDEYGFGLSKRRVTLSTSGIVPALDKLRNMIDVSLAISL 229 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALN 301 HA ++ +RNI++PINRKY + ++ + Y SNA R IT EYVML INDS +A Sbjct: 230 HAPNDFIRNIIMPINRKYNISSVLSSALKYFKYSNANRGGITIEYVMLDRINDSNENARQ 289 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L +L IP+KINLIP+N + G +LCS+ I F+ +++ G+++ IR RG DI AA Sbjct: 290 LSVLLSKIPSKINLIPWNSFSGPSFLCSNTDRINMFANILRKKGFTTTIRKNRGEDINAA 349 Query: 362 CGQL 365 CGQL Sbjct: 350 CGQL 353 >gi|213028233|ref|ZP_03342680.1| hypothetical protein Salmonelentericaenterica_40390 [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 356 Score = 278 bits (710), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 156/352 (44%), Positives = 206/352 (58%), Gaps = 19/352 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ KW+Y +F M+DI++ +R L + I PE+V+E+ S DGT KW + Sbjct: 12 FRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAV 71 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G +ETVYIPE R TLCVSSQVGC+L C FC T Q RNL EI+ QV Sbjct: 72 ------GDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVW 125 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A ++G + G R I+N+VMMGMGEPL N NV ++ I D G Sbjct: 126 RAAKIVG----AAKVTGQ------RPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGL 175 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 SKRR+TLSTSG VP + ++G+ I V LAISLHA ++ +R+ +VPIN+KY +E + A R Sbjct: 176 SKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKYNIETFLGAVRR 235 Query: 273 YPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 Y SNA R+T EYVML +ND A L ++LK P KINLIP+NP+PG Y S Sbjct: 236 YLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKETPCKINLIPWNPFPGAPYGRSS 295 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK-SLSKRIPKVPRQEMQ 381 I FS+ + G+++ +R RG DI AACGQL + R + R+ MQ Sbjct: 296 NSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKRMQ 347 >gi|319779677|ref|YP_004130590.1| Ribosomal RNA large subunit methyltransferase N [Taylorella equigenitalis MCE9] gi|317109701|gb|ADU92447.1| Ribosomal RNA large subunit methyltransferase N [Taylorella equigenitalis MCE9] Length = 378 Score = 278 bits (710), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 151/365 (41%), Positives = 217/365 (59%), Gaps = 14/365 (3%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M L+K++LIG+ L E + K G H R Q+ WI+ +G +F M++++ + Sbjct: 1 MTILEKQNLIGLDYTVLTELVAKWG----HKPFRAKQLMNWIHQKGESNFSNMTNLANDF 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L + I P+ + +++S DGT KWL + IETV+IPE RGTLC+SS Sbjct: 57 RKNLAEFAEISVPKELTKQVSTDGTTKWLFD-----VQNNNAIETVFIPEDDRGTLCISS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC++ C FC TG Q RNLT EI+ QV LAR + DI+ + P R IS Sbjct: 112 QAGCTVACRFCSTGHQGFNRNLTTSEIIGQVWLARKEI--LNSSTDIQKL--PG-DRVIS 166 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+V MGMGEPL N+D V ++ + D S+RR+T+STSG +P + ++ ++ V LA Sbjct: 167 NVVFMGMGEPLLNYDQVLPAVKMLVDQNAYGLSRRRVTVSTSGVIPFMDKLSQDCPVALA 226 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++ LRN L+P+N+KYPL+ LIDAC Y + ITFEY+ML+ +ND+ A Sbjct: 227 VSLHAPNDALRNQLIPLNKKYPLKELIDACNRYIEFAPRDFITFEYIMLEDVNDTDIHAN 286 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 LI+I + + +K+NLIPFNP+P S + + FS + +G + R RG DI A Sbjct: 287 QLIEICREVKSKVNLIPFNPFPESGLKRSSSQRVKAFSAILNDAGIVATTRKTRGDDIDA 346 Query: 361 ACGQL 365 ACGQL Sbjct: 347 ACGQL 351 >gi|320353873|ref|YP_004195212.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfobulbus propionicus DSM 2032] gi|320122375|gb|ADW17921.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfobulbus propionicus DSM 2032] Length = 371 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 156/361 (43%), Positives = 218/361 (60%), Gaps = 23/361 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK L + +E+L + +G P R QI WIY GI DF M+D+++E R +L Sbjct: 6 KKTDLKNLTQEQLVRFVESLGQPA----FRGRQILAWIYRPGIIDFTQMTDLAKEFRAIL 61 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q S D + C +R ++F R G + IE+V IPE+ R TLCVSSQVGC Sbjct: 62 TQ--SAFMSRFDDCMVEC--SRDGAVKFAFRLDDGQI-IESVLIPEEDRNTLCVSSQVGC 116 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 ++ CSFC TG RNLT EI+ QV R D+ D +G+ ++NIV Sbjct: 117 AMGCSFCLTGAMGFCRNLTTAEIVNQVCAVR----DWTLAHD-KGL--------LTNIVF 163 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDN+ +++I ++ GL FS RRIT+ST G VP + R+GEE V LA+SLH Sbjct: 164 MGMGEPLANFDNLLDAIAILTEQRGLDFSNRRITVSTCGLVPQMRRLGEETDVNLAVSLH 223 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV++++R+ L+P+N++YP+ LI+ CR Y +RI FEY +L+GINDS DA+ L + Sbjct: 224 AVNDEVRSRLMPVNKRYPIAELIEVCRTYRQ-KRRKRIMFEYTLLQGINDSDADAVQLAE 282 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L+ +P KINL+ NP G Y ++ ++ F ++ GY+ IRT RG DI AACGQ Sbjct: 283 LLREVPCKINLLAVNPGSGSAYQSPGEERVLCFQRILRDRGYTVFIRTSRGEDISAACGQ 342 Query: 365 L 365 L Sbjct: 343 L 343 >gi|219682208|ref|YP_002468592.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219621941|gb|ACL30097.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311086023|gb|ADP66105.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086597|gb|ADP66678.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087180|gb|ADP67260.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087708|gb|ADP67787.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 363 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 157/364 (43%), Positives = 212/364 (58%), Gaps = 24/364 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K +L+ + R+ L+ L+ +G T Q+ WIY DF M +IS + R Sbjct: 12 ISKINLLDLNRQNLKYFLISLGAKN----FCTEQVMSWIYNYYCDDFNKMLNISIKTRKK 67 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L + I E ++EKIS DGT KW+ + +IETVY+PEK R TLCVSSQ+G Sbjct: 68 LYEKSYIFASEFIEEKISYDGTIKWITDINNQ------KIETVYMPEKKRSTLCVSSQIG 121 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 CSL C FC TG + RNL EI+ Q+ A L + ++ + I+NIV Sbjct: 122 CSLKCHFCATGQEGFQRNLKVSEIIAQIWQANKRLKE------------KNIKKNITNIV 169 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MGMGEPL N NV +L+I D G SKRR+TLSTSG VP + ++ I V LAISL Sbjct: 170 FMGMGEPLLNLKNVVSALTIILDEYGFGLSKRRVTLSTSGIVPALDKLRNMIDVSLAISL 229 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALN 301 HA ++ +RNI++PINRKY + ++ + Y SNA R IT EYVML INDS A Sbjct: 230 HAPNDFIRNIIMPINRKYNISSVLSSALKYFKYSNANRGGITIEYVMLDRINDSNEHARQ 289 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L +L IP+KINLIP+N + G +LCS+ I F+ +++ G+++ IR RG DI AA Sbjct: 290 LSVLLSKIPSKINLIPWNSFSGPSFLCSNTDRINMFANILRKKGFTTTIRKNRGEDINAA 349 Query: 362 CGQL 365 CGQL Sbjct: 350 CGQL 353 >gi|171463401|ref|YP_001797514.1| radical SAM enzyme, Cfr family [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192939|gb|ACB43900.1| radical SAM enzyme, Cfr family [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 383 Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 147/338 (43%), Positives = 205/338 (60%), Gaps = 11/338 (3%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ RG+ D MSD+++ R L ++ ++ ++ + DGTRKWLL Sbjct: 13 FRAKQLMQWIHQRGVSDINHMSDLAKSFRATLLDKTEVLSLPVIKDEHALDGTRKWLLD- 71 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +E+V+IPE RGTLC+SSQ GC++ C FC TG Q RNLT+ EI+ Q+ Sbjct: 72 ----VGAGNAVESVFIPEDDRGTLCISSQAGCAVNCRFCSTGHQGFARNLTSGEIIGQLW 127 Query: 153 LARSLLGDFPG--CEDIEGMVIPS---VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207 A LL + P C IE + P GR ISN+VMMGMGEPL N+DNV +L + D Sbjct: 128 FAEHLLRNDPEAVCR-IEKFLTPGWEHTGRVISNVVMMGMGEPLLNYDNVVSALRLMLDD 186 Query: 208 MGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267 S+RR+T+STSG VP I R+ ++ V LA+SLHA ++ LR+ LVP+N+KY L L+ Sbjct: 187 RAYGLSRRRVTVSTSGVVPMIDRLAQDCPVALAVSLHAPNDALRDQLVPLNQKYLLRELL 246 Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL 327 DAC Y + +TFEY ML +NDS A L+++L+ I KINLIPFNP+P Sbjct: 247 DACERYLPFAPRDFLTFEYCMLDSVNDSDIQAKELVRLLRNIKCKINLIPFNPFPESGLK 306 Query: 328 CSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 S + + F+ + +G + +R RG DI AACGQL Sbjct: 307 RSPAQRVNAFAGILLDAGMVATVRKTRGDDIAAACGQL 344 >gi|254480238|ref|ZP_05093486.1| radical SAM enzyme, Cfr family [marine gamma proteobacterium HTCC2148] gi|214039800|gb|EEB80459.1| radical SAM enzyme, Cfr family [marine gamma proteobacterium HTCC2148] Length = 391 Score = 276 bits (707), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 154/363 (42%), Positives = 216/363 (59%), Gaps = 21/363 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+G+ +E+ L++G + R Q+ KWI+ G+ D MS++ + +R L Sbjct: 17 EKVNLLGLPLAAMEQYFLELG----EKKFRAQQVLKWIHHHGVTDIDEMSNLGKVLREKL 72 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PEIV + S DGTRKW +R GG + +E V IP+ R TLCVSSQVGC Sbjct: 73 KSVAEIKPPEIVSQHDSNDGTRKWAIRVE----GGGL-VEAVLIPDGKRATLCVSSQVGC 127 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 SL CSFC TG Q R+L+A EI+ QV LA F + GR ++N+VM Sbjct: 128 SLDCSFCSTGKQGFQRDLSAAEIIGQVWLAIKSYDAFQSAK----------GRIVTNVVM 177 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV ++ + + SKRR+TLSTSG VP + ++ + V LA+SLH Sbjct: 178 MGMGEPLLNFDNVVAAMDLMMEDNAYGISKRRVTLSTSGVVPALDKLAKVSEVSLAVSLH 237 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARR-ITFEYVMLKGINDSPRDALNL 302 A ++ LR+ LVPINRKYP+ +L+++ R+Y S+ +R +T EY ++ G+ND A L Sbjct: 238 APNDALRSELVPINRKYPIAVLLESARNYIDAQSDKKRVVTIEYTLIAGVNDQREHAQEL 297 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LKG P KINLIPFN + +Y + F + + +GY +RT RG DI AAC Sbjct: 298 AQLLKGYPCKINLIPFNTFDQSDYRRPSGNAVSRFWQVLVDAGYIVTVRTTRGDDIDAAC 357 Query: 363 GQL 365 GQL Sbjct: 358 GQL 360 >gi|167562546|ref|ZP_02355462.1| radical SAM enzyme, Cfr family protein [Burkholderia oklahomensis EO147] Length = 378 Score = 276 bits (707), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 145/342 (42%), Positives = 206/342 (60%), Gaps = 16/342 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ DF GM+D+++ +R L I P+I+ + +S DGTRKWL+ Sbjct: 29 FRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRAVIGTPDILSDHVSADGTRKWLIN- 87 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q RNL+ EI+ Q+ Sbjct: 88 ----VGSGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLR 143 Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 +A R+ LG PG R I+N+VMMGMGEPL N+ V ++ + D Sbjct: 144 MAEFALRASLGREPGPNG-------RADRVITNVVMMGMGEPLLNYSAVVPAMRLMLDDN 196 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S+RR+TLSTSG VP + ++G E+ V LA+SLHA ++ LR+ LVP+N+K+PL L+ Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDKLGAELPVALAVSLHAPNDALRDELVPLNKKHPLRELMA 256 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 AC+ Y ++ ITFEY ML G+ND+ A L+ + + +P K NLIPFNP+P + Sbjct: 257 ACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLALTRDVPCKFNLIPFNPFPESGLVR 316 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 S I F++ + +G + IR RG DI AACGQL K Sbjct: 317 SKPDQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLAGAVK 358 >gi|254449223|ref|ZP_05062672.1| radical SAM enzyme, Cfr family [gamma proteobacterium HTCC5015] gi|198261200|gb|EDY85496.1| radical SAM enzyme, Cfr family [gamma proteobacterium HTCC5015] Length = 380 Score = 276 bits (707), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 146/339 (43%), Positives = 202/339 (59%), Gaps = 18/339 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R +Q+ KWI+ R + DF M+D+S+ +R +L + + PE+V E+ S DGTRKW+L Sbjct: 29 FRATQVTKWIHHRCVDDFDEMTDLSKSLREMLKRDAEVRAPEVVLEQKSADGTRKWVLDL 88 Query: 93 PARCIGGPV------EIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEE 146 + ++E V+IPE RGTLCVSSQVGCSL CSFC T Q RNL+ E Sbjct: 89 DNQATASRTTPAIGNKVEMVFIPEDGRGTLCVSSQVGCSLDCSFCSTARQGFSRNLSVAE 148 Query: 147 ILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD 206 I+ QV A+ L + E +++N+VMMGMGEPL N+ V ++++ D Sbjct: 149 IIGQVWQAKRTLLELGEDE------------RLTNVVMMGMGEPLMNYRPVIQAVNTMMD 196 Query: 207 SMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEML 266 MG SKR++T+STSG VP + R+ E+ LA+SLHA ++ LR+ LVPIN+K+PL L Sbjct: 197 DMGYGLSKRKVTISTSGMVPAMERMIEDTQCALAVSLHAPNDSLRDELVPINKKHPLNEL 256 Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 + C + R +T+EYVML+G+ND+ A L K+LK AK+NLIPFNP+P Y Sbjct: 257 MGVCDRWVEAGPKRNVTYEYVMLEGVNDNREQAHELGKLLKAREAKVNLIPFNPFPNSGY 316 Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 S + I F + G + R RG DI AACGQL Sbjct: 317 KRSSEARIKEFKRILNSYGVFTFPRKTRGDDIDAACGQL 355 >gi|145299533|ref|YP_001142374.1| ribosomal RNA large subunit methyltransferase N [Aeromonas salmonicida subsp. salmonicida A449] gi|205829709|sp|A4SP04|RLMN_AERS4 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|142852305|gb|ABO90626.1| predicted Fe-S-cluster redox enzyme [Aeromonas salmonicida subsp. salmonicida A449] Length = 368 Score = 276 bits (706), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 161/382 (42%), Positives = 217/382 (56%), Gaps = 28/382 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+ + +++G R QI KWIY G DF M+++++ +R L Sbjct: 6 KTNLLDLDRDAMRAFFVELG----EKPFRADQIMKWIYHFGCDDFDQMNNVNKVLRERLK 61 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I PE+ E+ S DGT KW L+ +GG E+ETVYIPE+ R TLCVSSQVGC+ Sbjct: 62 AIAEIRAPEVSREQRSSDGTIKWALQ-----VGGQ-EVETVYIPEEDRATLCVSSQVGCA 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G R I+N+VMM Sbjct: 116 LACKFCSTAQQGFNRNLKVSEIIGQVWRAAKIVGG---------------KRPITNVVMM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N NV ++ + D G SKRR+T+STSG VP + +G++I V LAISLHA Sbjct: 161 GMGEPLLNLANVIPAMRLMMDDFGYGISKRRVTISTSGVVPALDILGDQIDVALAISLHA 220 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++ LR+ ++PIN KY +E + R Y SNA R+T EYV+L IND + A L Sbjct: 221 PNDKLRSEIMPINDKYNIEDFLAGVRRYLAKSNANGGRVTVEYVLLDHINDDMQHAHELA 280 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+LK P+KINLIPFNP+PG Y I FS+ + G++ +R RG DI AACG Sbjct: 281 KVLKDTPSKINLIPFNPFPGNPYGKPSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAACG 340 Query: 364 QL-KSLSKRIPKVPRQEMQITG 384 QL + R + + MQ G Sbjct: 341 QLVGEVIDRTKRTMKNRMQQDG 362 >gi|56476113|ref|YP_157702.1| Fe-S-cluster redox protein [Aromatoleum aromaticum EbN1] gi|81358332|sp|Q5P7B0|RLMN_AZOSE RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|56312156|emb|CAI06801.1| predicted Fe-S-cluster redox enzyme [Aromatoleum aromaticum EbN1] Length = 408 Score = 276 bits (706), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 153/366 (41%), Positives = 209/366 (57%), Gaps = 38/366 (10%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +W++ G DF M+D+++ +R L + I P + + +S DGTRKWLL Sbjct: 27 FRARQVMRWMHRFGETDFGNMTDVAKSLRAKLAEEACIRAPRAIRDAVSVDGTRKWLLD- 85 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +E V+IPE +RGTLC+SSQ GC+L C+FC TG Q RNL+A EI+ Q+ Sbjct: 86 ----VGSANAVEAVFIPETNRGTLCISSQAGCALDCAFCSTGKQGFNRNLSAAEIIGQLW 141 Query: 153 LARSLLG---------DFPG--------------CEDIEGMVIPSV----------GRKI 179 LA LLG D G D +G+ S GR I Sbjct: 142 LANRLLGGSASPAGSKDGDGGPDHASRATKLDHRAADAKGVQSDSWRSSDPEEDHNGRVI 201 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 SN+VMMGMGEPL NFDNV +L + D S+RR+T+STSG VP + R+ +E V L Sbjct: 202 SNVVMMGMGEPLANFDNVVTALRLMLDDHAYGLSRRRVTVSTSGIVPAMDRLRDECPVAL 261 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA + LR+ LVPINRKYPL L+ AC+ Y + +TFEYVML +NDS A Sbjct: 262 AVSLHAPDDALRDRLVPINRKYPLRELMAACQRYLERAPRDFVTFEYVMLDDVNDSDAHA 321 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L+++++ +P K NLIPFNP+P + S + I F+ + +G + R RG D+ Sbjct: 322 RALVELVRDVPCKFNLIPFNPFPNSGFDRSPAERIRRFAAILIDAGIVTTTRKTRGDDVN 381 Query: 360 AACGQL 365 AACGQL Sbjct: 382 AACGQL 387 >gi|330830071|ref|YP_004393023.1| ribosomal RNA large subunit methyltransferase N [Aeromonas veronii B565] gi|328805207|gb|AEB50406.1| Ribosomal RNA large subunit methyltransferase N [Aeromonas veronii B565] Length = 367 Score = 276 bits (706), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 159/382 (41%), Positives = 215/382 (56%), Gaps = 28/382 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+ + +++G R Q+ KWIY G DF M+++++ ++ L Sbjct: 5 KINLLDLDRDAMRAFFVELG----EKPFRADQVMKWIYHFGCDDFDQMTNVNKVLKERLK 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I PEI E+ S DGT KW L+ G E+ETVYIPE R TLCVSSQVGC+ Sbjct: 61 AIAEIKAPEISREQRSADGTIKWALQV------GDQEVETVYIPEDDRATLCVSSQVGCA 114 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G R I+N+VMM Sbjct: 115 LECKFCSTAQQGFNRNLKVSEIIGQVWRAARVVGG---------------KRPITNVVMM 159 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N NV ++ + D G SKRR+T+STSG VP + ++G++I V LAISLHA Sbjct: 160 GMGEPLLNLANVVPAMRLMMDDYGFGISKRRVTISTSGVVPALDKLGDQIDVALAISLHA 219 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++ LR+ ++PIN KY +E + R Y SNA R+T EYV+L IND + A L Sbjct: 220 PNDKLRSEIMPINDKYNIEEFLAGVRRYLAKSNANGGRVTVEYVLLDHINDDMQHAHELA 279 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+LK P+KINLIPFNP+PG Y I FS+ + G++ +R RG DI AACG Sbjct: 280 KVLKDTPSKINLIPFNPFPGNPYGKPSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAACG 339 Query: 364 QL-KSLSKRIPKVPRQEMQITG 384 QL + R + + MQ G Sbjct: 340 QLVGDVIDRTKRTIKNRMQQDG 361 >gi|269468799|gb|EEZ80403.1| hypothetical protein Sup05_0839 [uncultured SUP05 cluster bacterium] Length = 358 Score = 276 bits (706), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 160/375 (42%), Positives = 219/375 (58%), Gaps = 26/375 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K++L G+ + EL+ K+G RT Q KWIY + DF M ++S+E+R L Sbjct: 4 KQNLFGLSQSELDTFFSKLG----EKPYRTKQFMKWIYHQHEFDFNQMLNLSKELRQKLL 59 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 Q ++ P+I + + DG KWL+ +G IE VYIPEK RGTLC+SSQVGCS Sbjct: 60 QVATLELPKISSQNFASDGLIKWLID-----LGSDNHIEMVYIPEKDRGTLCISSQVGCS 114 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC TG Q RNLT EI+ Q+++A L +KISN+V M Sbjct: 115 LACTFCSTGMQGFNRNLTTAEIIAQIIIANEHLS--------------HENKKISNVVFM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +V + + D + S+R++T+STSG VP + R+ + V LAISLHA Sbjct: 161 GMGEPLLNEKSVYSACDLLLDDLAFGLSRRKVTISTSGVVPALYRMAQTTPVSLAISLHA 220 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIK 304 ++LR+ LVPIN+KYP+E L+ AC++Y + R I FEYVML G+ND+ A L K Sbjct: 221 PDDELRDELVPINQKYPIEELMAACKNYLTSGTQERHILFEYVMLDGVNDTMEHAKKLAK 280 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L+GI AK+NLIPFNP+P +Y S I F + + ++G + R RG D+ ACGQ Sbjct: 281 LLRGISAKVNLIPFNPFPKTQYKTSKAFTIKQFQDVLFQAGIRTMTRRTRGEDVDGACGQ 340 Query: 365 LKSLSKRIPKVPRQE 379 L K I K R E Sbjct: 341 LA--GKVIDKTRRTE 353 >gi|134094488|ref|YP_001099563.1| hypothetical protein HEAR1261 [Herminiimonas arsenicoxydans] gi|205829776|sp|A4G4J9|RLMN_HERAR RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|133738391|emb|CAL61436.1| putative Fe-S-cluster redox enzyme [Herminiimonas arsenicoxydans] Length = 386 Score = 276 bits (706), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 140/333 (42%), Positives = 202/333 (60%), Gaps = 10/333 (3%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ G DF M+D+++ +R L I P ++ + S DGTRKWL+ Sbjct: 28 FRAKQLQRWIHQFGASDFDAMTDLAKSLRDKLKTRAMIAAPAVISDHTSSDGTRKWLID- 86 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE++RGTLC+S+Q GC++ C FC TG Q RNL+ EI+ Q+ Sbjct: 87 ----VGQGNAVETVFIPEENRGTLCISTQAGCAVNCRFCSTGKQGFNRNLSVGEIIGQLW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 +A L G E P R+I+N+VMMGMGEPL N++ +L + D Sbjct: 143 MAEFELRRTKGIEPG-----PKGERQITNVVMMGMGEPLLNYEPTVTALKLMLDDNAYGL 197 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+TLSTSG VP I ++ ++ V LA+SLHA ++ LR+ LVP+N+KYPL+ L+ AC+ Sbjct: 198 SRRRVTLSTSGVVPMIDKLSQDCAVALAVSLHASNDALRDGLVPLNKKYPLQELMAACKR 257 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + +TFEY ML G+NDS + A L+ +++ +P K NLIPFNP+P S+ Sbjct: 258 YLEFAPRDFVTFEYCMLDGVNDSDQHARELLTLVRDVPCKFNLIPFNPFPESGLTRSNNP 317 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F++ + G + IR RG DI AACGQL Sbjct: 318 RIKAFAQVLMDGGLVTTIRKTRGDDIDAACGQL 350 >gi|90408602|ref|ZP_01216757.1| hypothetical protein PCNPT3_04766 [Psychromonas sp. CNPT3] gi|90310294|gb|EAS38424.1| hypothetical protein PCNPT3_04766 [Psychromonas sp. CNPT3] Length = 372 Score = 275 bits (704), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 155/364 (42%), Positives = 213/364 (58%), Gaps = 22/364 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +KK +L+ + RE L + +G R Q+ KWIY G DF MS+I++++R Sbjct: 3 IKKVNLLNLNREGLRAFFVDMG----EKAFRAEQVMKWIYHYGCDDFSEMSNINKKLREK 58 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L I+ PE+ E+ S DGT KW+++ G +IETVYIPEK R TLCVSSQVG Sbjct: 59 LTLCAEIVAPEVRVEQRSKDGTIKWVMKV------GDQDIETVYIPEKDRATLCVSSQVG 112 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L C+FC T Q RNLT EI+ QV A ++G ++ S R I+N+V Sbjct: 113 CALACNFCSTAQQGFNRNLTVSEIIGQVWRAAKIVG----------VMGESGKRPITNVV 162 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N +NV ++ + D G + SKRR+T+STSG VP + +G+ I V LAISL Sbjct: 163 MMGMGEPLLNLNNVIPAMELMLDDFGYALSKRRVTISTSGVVPALDILGDRIDVALAISL 222 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALN 301 HA +++LR+ ++PIN KY + + + Y S A R +T EY++L NDS A Sbjct: 223 HASNDELRSQMMPINDKYNIADFLAGVKRYIAKSKANRGKVTIEYLLLDHFNDSTDQAHE 282 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L +LK P KINLIPFNP+P Y + F++ + GY+ +R RG DI AA Sbjct: 283 LAILLKDTPCKINLIPFNPFPDNSYKKPSNSRVDRFNKVLMEYGYTVIVRKTRGDDIDAA 342 Query: 362 CGQL 365 CGQL Sbjct: 343 CGQL 346 >gi|325294881|ref|YP_004281395.1| ribosomal RNA large subunit methyltransferase N [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065329|gb|ADY73336.1| Ribosomal RNA large subunit methyltransferase N [Desulfurobacterium thermolithotrophum DSM 11699] Length = 345 Score = 275 bits (704), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 147/357 (41%), Positives = 214/357 (59%), Gaps = 26/357 (7%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 EEL+ + +G R QI +WIY + ++ F M++IS+ R +L+++ I + Sbjct: 10 EELQNFVQSLGFEN----YRAKQIAQWIYKKRVKSFDEMTNISKAARKVLSENAKIDVLK 65 Query: 75 IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134 +V + S DGT+K+L + +E+V+IPEK TLCVS+QVGC + C FC T Sbjct: 66 LVKVEKSMDGTKKYLFE-----LEDGNRVESVFIPEKDWNTLCVSTQVGCPVGCKFCLTA 120 Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194 RNLTA EI+ Q + + +G+ ++ISN+V MGMGEP NF Sbjct: 121 KDGFTRNLTAAEIVDQYIHVQRDVGE---------------DKRISNVVFMGMGEPFLNF 165 Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDLRNI 253 +NVKK++ I +D L S R+IT+ST G VP I R+ +E+ V LAISLHA ++++R Sbjct: 166 ENVKKAVEIMTDKNMLDLSTRKITISTVGVVPGIDRMAKEMNKVKLAISLHATTDEVREK 225 Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313 +VP+NRKYP+ ++ A R YP N RRI EYVML+G+NDS DA L+K++KGIP K+ Sbjct: 226 IVPLNRKYPISEIMAALRRYPA-DNIRRIMIEYVMLEGVNDSVEDAKRLVKLVKGIPVKV 284 Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 NLIPFN +PG + S ++ F + + ++ IR RG DI AACG L++ K Sbjct: 285 NLIPFNSYPGAPFKPSSKEQTEKFQKVLWDHNIAAFIRDSRGQDISAACGMLRTKEK 341 >gi|319943743|ref|ZP_08018024.1| cfr family radical SAM enzyme [Lautropia mirabilis ATCC 51599] gi|319742976|gb|EFV95382.1| cfr family radical SAM enzyme [Lautropia mirabilis ATCC 51599] Length = 460 Score = 275 bits (704), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 150/343 (43%), Positives = 203/343 (59%), Gaps = 15/343 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +W++ RG+ D+ M+D+++ R L I P ++ + + D TRKWL Sbjct: 86 FRAHQLMRWVHQRGVADWSAMTDLARSFRERLQDKALIQAPSVLKDHTAPDATRKWLFD- 144 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +E V+IPE RGTLCVSSQ GC++ CSFC TG Q RNL EIL Q+ Sbjct: 145 ----VGAGNAVEAVFIPEARRGTLCVSSQAGCAVNCSFCSTGKQGFSRNLNTAEILGQIW 200 Query: 153 LARSLL---GDFP---GCEDI----EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS 202 LA LL G P G +D+ E + R ISNIV MGMGEPL N++ + +L Sbjct: 201 LANQLLRQPGAQPRWGGADDMAQLDEDVDDAGALRPISNIVFMGMGEPLLNYNALLPALR 260 Query: 203 IASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYP 262 D G S+RR+T+STSG VP I R+ E+ V LA+SLHA ++ LR+ LVP+NRKYP Sbjct: 261 ALLDDHGYGLSRRRVTVSTSGVVPLIDRLSEDCPVALAVSLHASNDTLRDQLVPLNRKYP 320 Query: 263 LEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP 322 L+ L+ AC+ Y ++ ITFEYVMLK INDS A L ++ +P K NLIPFNP+P Sbjct: 321 LKELLAACQRYLKVAPRDFITFEYVMLKDINDSVAHARELAALVADVPCKFNLIPFNPFP 380 Query: 323 GCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 S + I F + + R+G + +R RG +I AACGQL Sbjct: 381 NSGLSRSSDRTIRQFGDVLLRAGIVTTVRRTRGDEIDAACGQL 423 >gi|312973242|ref|ZP_07787414.1| UPF0063 protein yfgB [Escherichia coli 1827-70] gi|310331837|gb|EFP99072.1| UPF0063 protein yfgB [Escherichia coli 1827-70] Length = 339 Score = 275 bits (704), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 154/345 (44%), Positives = 205/345 (59%), Gaps = 19/345 (5%) Query: 40 KWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG 99 KW+Y +F M+DI++ +R L + I PE+V+E+ S DGT KW + G Sbjct: 2 KWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAV------G 55 Query: 100 PVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLG 159 +ETVYIPE R TLCVSSQVGC+L C FC T Q RNL EI+ QV A ++G Sbjct: 56 DQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG 115 Query: 160 DFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITL 219 + G R I+N+VMMGMGEPL N +NV ++ I D G SKRR+TL Sbjct: 116 ----AAKVTGQ------RPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTL 165 Query: 220 STSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279 STSG VP + ++G+ I V LAISLHA ++++R+ +VPIN+KY +E + A R Y SNA Sbjct: 166 STSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNA 225 Query: 280 R--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTF 337 R+T EYVML +ND A L ++LK P KINLIP+NP+PG Y S I F Sbjct: 226 NQGRVTIEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRF 285 Query: 338 SECIKRSGYSSPIRTPRGLDILAACGQLK-SLSKRIPKVPRQEMQ 381 S+ + G+++ +R RG DI AACGQL + R + R+ MQ Sbjct: 286 SKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKRMQ 330 >gi|221066031|ref|ZP_03542136.1| radical SAM enzyme, Cfr family [Comamonas testosteroni KF-1] gi|220711054|gb|EED66422.1| radical SAM enzyme, Cfr family [Comamonas testosteroni KF-1] Length = 373 Score = 275 bits (703), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 146/339 (43%), Positives = 197/339 (58%), Gaps = 20/339 (5%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R R +Q+++WI+ RG DF M+D+++ +R L I +V E +S DGT KWL Sbjct: 24 RFRATQLFRWIHQRGASDFDQMTDLAKSLREKLKSRAHITALPVVTEHVSADGTVKWLFD 83 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 +G +E+V+IPE RGTLCVSSQ GC++ C FC TG Q RNL EIL Q+ Sbjct: 84 -----VGDGNAVESVFIPEDDRGTLCVSSQAGCAVGCRFCSTGHQGFSRNLDTGEILAQL 138 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A L G ED R ISN+VMMGMGEPL N+ + +L + D G Sbjct: 139 WYAEHSLRKRFGTED----------RIISNVVMMGMGEPLQNYSALVPALRVMLDDHGYG 188 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S+RR+T+STSG VP + R+ ++ V LA+SLHA ++ LR+ LVP+NRKYP+ L+DAC Sbjct: 189 LSRRRVTVSTSGVVPMMDRLSQDCAVALAVSLHAPNDPLRDNLVPLNRKYPIAELLDACE 248 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP-----AKINLIPFNPWPGCEY 326 Y + ITFEY ML G+ND P A LI++++ K NLIPFNP+P Sbjct: 249 RYLEFAPRDFITFEYCMLDGVNDQPEHARQLIELVRARGDGKSWCKFNLIPFNPFPASGL 308 Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L S + F+ + +G + +R RG DI AACGQL Sbjct: 309 LRSSAARVTEFATMLSNAGIVTTVRKTRGDDIDAACGQL 347 >gi|319763716|ref|YP_004127653.1| radical sam enzyme, cfr family [Alicycliphilus denitrificans BC] gi|317118277|gb|ADV00766.1| radical SAM enzyme, Cfr family [Alicycliphilus denitrificans BC] Length = 374 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 154/352 (43%), Positives = 207/352 (58%), Gaps = 25/352 (7%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R R +Q+++WI+ RG DF MSD+++ +R L + + + E S DGT KWL Sbjct: 24 RFRATQLFRWIHQRGASDFDQMSDLAKSLREKLKGCAHVSGLQAISEHASADGTVKWLFD 83 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 +GG +ETV+IPE RGTLC+SSQ GC++ C FC TG Q RNLT EI+ Q+ Sbjct: 84 -----VGGGNAVETVFIPEDDRGTLCISSQAGCAVGCRFCSTGHQGFSRNLTTGEIVAQL 138 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A +L G D E R ISN+VMMGMGEPL N+ + +L I D G Sbjct: 139 WHAEHVLRQRRG--DGE--------RVISNVVMMGMGEPLQNYSALVPALRIMLDDHGYG 188 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S+RR+T+STSG VP + R+G + V LA+SLHA +++LR+ LVP+NRKYPL+ L+ ACR Sbjct: 189 LSRRRVTVSTSGVVPMMDRLGRDCPVALAVSLHAPNDELRDNLVPLNRKYPLQELLAACR 248 Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILK------GIPAKINLIPFNPWPG 323 Y L +A R ITFEY ML G+ND P A LI ++ G+ K NLIPFNP+P Sbjct: 249 RY--LEHAPRDFITFEYCMLDGVNDQPEHARELIALVSRKAADGGVSCKFNLIPFNPFPA 306 Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKV 375 S + F++ + +G + +R RG DI AACGQL K +V Sbjct: 307 SGLRRSPAAAVSAFAKLLSDAGIVTTVRKTRGDDIDAACGQLAGDVKDRTRV 358 >gi|329912290|ref|ZP_08275720.1| hypothetical protein IMCC9480_747 [Oxalobacteraceae bacterium IMCC9480] gi|327545652|gb|EGF30807.1| hypothetical protein IMCC9480_747 [Oxalobacteraceae bacterium IMCC9480] Length = 388 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 146/353 (41%), Positives = 211/353 (59%), Gaps = 15/353 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ G DF M+D+++ +R L + P ++ + S DGTRKWLL Sbjct: 26 FRAKQLQRWIHQFGASDFTAMTDLAKSLRDKLATRAVVQSPAVISDHTSTDGTRKWLLD- 84 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE++RGTLC+S+Q GC++ C FC TG Q RNLT EI+ Q+ Sbjct: 85 ----VGQGNAVETVFIPEENRGTLCISTQAGCAVNCRFCSTGKQGFNRNLTVGEIIGQLW 140 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 +A L G E P R+I+N+VMMGMGEPL N++ +L + D Sbjct: 141 MAEFELRKTKGIEPG-----PKGERQITNVVMMGMGEPLLNYEPTVTALKLMLDDNAYGL 195 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+TLSTSG VPNI ++G++ V LA+SLHA ++ LR+ LVP+N+KYPL+ L+ AC Sbjct: 196 SRRRVTLSTSGVVPNIDKLGQDCPVALAVSLHASNDALRDSLVPLNKKYPLKELMAACVR 255 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG----IPAKINLIPFNPWPGCEYLC 328 Y + +TFEY ML G+ND+ + A L+ +++ +P K NLIPFNP+P Sbjct: 256 YLEFAPRDFVTFEYCMLDGVNDTEQHARELVALVRHGAQLVPCKFNLIPFNPFPESGLTR 315 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQ 381 S+ I F++ + +G + IR RG DI AACGQL + KV ++ MQ Sbjct: 316 SNNPQIKLFAQVLMDAGIVTTIRKTRGDDIDAACGQLAGEVQDRTKV-QERMQ 367 >gi|15803040|ref|NP_289070.1| hypothetical protein Z3780 [Escherichia coli O157:H7 EDL933] gi|12516911|gb|AAG57627.1|AE005481_3 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] Length = 384 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 158/379 (41%), Positives = 216/379 (56%), Gaps = 23/379 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + G +ETVYIPE R TLCVSSQVGC+ Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 126 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + G R I+N+VMM Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITNVVMM 176 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+ E + A R Y SNA R+T EYVML +ND A L Sbjct: 237 PNDEIRDEIVPINKXXNXETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+P Y S I FS+ + G+++ +R RG DI AACG Sbjct: 297 ELLKDTPCKINLIPWNPFPAAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356 Query: 364 QLK-SLSKRIPKVPRQEMQ 381 QL + R + R+ MQ Sbjct: 357 QLAGDVIDRTKRTLRKRMQ 375 >gi|261856771|ref|YP_003264054.1| radical SAM enzyme, Cfr family [Halothiobacillus neapolitanus c2] gi|261837240|gb|ACX97007.1| radical SAM enzyme, Cfr family [Halothiobacillus neapolitanus c2] Length = 392 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 156/365 (42%), Positives = 219/365 (60%), Gaps = 26/365 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K +L+G+ ++L++ +++G R +Q+ KW++ R + F M+D+++ +R L Sbjct: 21 NKINLLGLTPQQLKDWFVELG----EKPFRATQLLKWVHQRRVDSFDDMTDLAKSLRDKL 76 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I P I ++ S DGTRK+LL GG VE+ VYIPE R TLC+SSQVGC Sbjct: 77 RDLACIRAPAIRLDQQSSDGTRKFLLELDG---GGSVEM--VYIPEDDRATLCISSQVGC 131 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG--RKISNI 182 SL C+FC TG Q RNLT EI+ Q+ LA E M+ +V R ISN+ Sbjct: 132 SLACTFCSTGRQGFNRNLTTAEIVGQLWLA-------------ERMIDRAVNHNRAISNV 178 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 V MGMGEPL NF++V + +I D S+RR+T+STSG +P I R+ E + V LAIS Sbjct: 179 VFMGMGEPLLNFESVVDAATIMLDDNAYGLSRRRVTISTSGIIPAIDRLAERLPVALAIS 238 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA ++ LR++LVPIN+KYPL+ L+ AC Y + I +EYVML+G+ND P A + Sbjct: 239 LHAPNDALRDVLVPINQKYPLDDLMAACDRYAKVVPHGAIIYEYVMLEGVNDEPVHAEEM 298 Query: 303 IKIL--KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 I++L + K+NLIPFNP+P Y S + I F +K +G ++ R RG DI A Sbjct: 299 IRLLAPRKDAVKVNLIPFNPFPSSGYKRSSRNRIERFRATLKAAGINTVPRKTRGDDIDA 358 Query: 361 ACGQL 365 ACGQL Sbjct: 359 ACGQL 363 >gi|330824021|ref|YP_004387324.1| ribosomal RNA large subunit methyltransferase N [Alicycliphilus denitrificans K601] gi|329309393|gb|AEB83808.1| Ribosomal RNA large subunit methyltransferase N [Alicycliphilus denitrificans K601] Length = 374 Score = 274 bits (700), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 154/352 (43%), Positives = 207/352 (58%), Gaps = 25/352 (7%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R R +Q+++WI+ RG DF MSD+++ +R L + + + E S DGT KWL Sbjct: 24 RFRATQLFRWIHQRGASDFDQMSDLAKSLREKLKGCAHVSGLQAISEHASADGTVKWLFD 83 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 +GG +ETV+IPE RGTLC+SSQ GC++ C FC TG Q RNLT EI+ Q+ Sbjct: 84 -----VGGGNAVETVFIPEDDRGTLCISSQAGCAVGCRFCSTGHQGFSRNLTTGEIVAQL 138 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A +L G D E R ISN+VMMGMGEPL N+ + +L I D G Sbjct: 139 WHAEHVLRQRRG--DGE--------RVISNVVMMGMGEPLQNYSALVPALRIMLDDHGYG 188 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S+RR+T+STSG VP + R+G + V LA+SLHA +++LR+ LVP+NRKYPL+ L+ ACR Sbjct: 189 LSRRRVTVSTSGVVPMMDRLGRDCPVALAVSLHAPNDELRDNLVPLNRKYPLQELLAACR 248 Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILK------GIPAKINLIPFNPWPG 323 Y L +A R ITFEY ML G+ND P A LI ++ G+ K NLIPFNP+P Sbjct: 249 RY--LEHAPRDFITFEYCMLDGVNDQPEHARELIALVSRKAADGGVSCKFNLIPFNPFPA 306 Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKV 375 S + F++ + +G + +R RG DI AACGQL K +V Sbjct: 307 SGLRRSPAVAVSAFAKLLSDAGIVTTVRKTRGDDIDAACGQLAGDVKDRTRV 358 >gi|94264318|ref|ZP_01288111.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93455284|gb|EAT05494.1| conserved hypothetical protein [delta proteobacterium MLMS-1] Length = 345 Score = 274 bits (700), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 150/338 (44%), Positives = 200/338 (59%), Gaps = 23/338 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI+ W+Y DF M+DI++ VR LL + + E E+ S DGT K+ R Sbjct: 28 FRARQIFSWLYRPDFSDFAQMTDIAKHVRALLAEKATFSRLEAAKEEHSTDGTVKFAFRL 87 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + IE+V IPE+ R TLCVSSQVGC++ C+FC TGT +RNLT E++ QV Sbjct: 88 SDGHL-----IESVLIPEEDRHTLCVSSQVGCAMGCNFCLTGTMGFIRNLTVAEMVGQVD 142 Query: 153 LARSLL---GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209 A L G G +++N+V MGMGEPL NFDN+ K+++I + G Sbjct: 143 QAAHWLWQRGAGSG--------------RLNNLVFMGMGEPLLNFDNLIKAINILMEQRG 188 Query: 210 LSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 S RRIT+ST G VP + +GE++ V LA+SLHA + R L+P+NR YPL L+ A Sbjct: 189 HDLSGRRITVSTCGIVPRMKELGEKVPVNLAVSLHAADHATREQLMPVNRTYPLAELLQA 248 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 CR YP L RRI EY +L GINDSP A L+K L GI KIN++PFN P Y C Sbjct: 249 CRQYP-LPPRRRIMIEYALLAGINDSPAAARLLVKQLHGIRCKINILPFNETPAFPYRCP 307 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 D I F + ++R+G+++ +RT RG DI AACGQL + Sbjct: 308 DPATIEAFRQILRRAGHTTLLRTSRGADIAAACGQLAA 345 >gi|300312259|ref|YP_003776351.1| Fe-S-cluster redox enzyme protein [Herbaspirillum seropedicae SmR1] gi|300075044|gb|ADJ64443.1| Fe-S-cluster redox enzyme protein [Herbaspirillum seropedicae SmR1] Length = 390 Score = 273 bits (699), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 150/353 (42%), Positives = 210/353 (59%), Gaps = 15/353 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ G+ DF M+D+++ +R L + P I+ + S DGTRKWL+ Sbjct: 28 FRAKQLQRWIHQFGVADFDQMTDLAKSLRDKLKTRAEVRAPAIISDHTSTDGTRKWLVD- 86 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE++RGTLCVS+Q GC++ C FC TG Q RNL+ EI+ Q+ Sbjct: 87 ----VGQGNAVETVFIPEENRGTLCVSTQAGCAVNCRFCSTGKQGFNRNLSVAEIIGQLW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 +A L G IEG P R+I+N+VMMGMGEPL NF+ +L + D Sbjct: 143 MAEFELRKTKG---IEGG--PKGERQITNVVMMGMGEPLLNFEPTVTALRLMLDDNAYGL 197 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+TLSTSG VP I ++ +E V LA+SLHA ++ LR+ L+P+NRK+PL L+ AC+ Sbjct: 198 SRRRVTLSTSGVVPMIGKLSQECPVALAVSLHASNDALRDSLIPLNRKHPLRELMLACKR 257 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILK----GIPAKINLIPFNPWPGCEYLC 328 Y + ITFEY ML G+ND+ A L+ ++K IP K NLIPFNP+P Sbjct: 258 YLEFAPRDFITFEYCMLDGVNDTDTHARELVALVKEGETAIPCKFNLIPFNPFPESGLKR 317 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQ 381 S I F++ + +G + IR RG DI AACGQL K +V ++ MQ Sbjct: 318 SHNPRIKAFAQILMDAGIVTTIRKTRGDDIDAACGQLAGEVKDRTRV-QERMQ 369 >gi|116751471|ref|YP_848158.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|205829911|sp|A0LQM1|RLMN_SYNFM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|116700535|gb|ABK19723.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB] Length = 342 Score = 273 bits (699), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 151/350 (43%), Positives = 215/350 (61%), Gaps = 25/350 (7%) Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75 ELEE + IG +R R R Q+++ +Y RG+R + SD+S+ R L + + Sbjct: 13 ELEEWVQGIG--ERSFRAR--QLFRHVYGRGVRSWSECSDLSRMFRVQLEHGVELDALSV 68 Query: 76 VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135 + ++ + DGT K+L + IE V IP+ R TLCVSSQVGC+L C FC TG+ Sbjct: 69 LKKEQADDGTSKYLF-----GLRDGHSIEAVLIPDLPRSTLCVSSQVGCALGCKFCLTGS 123 Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195 RNL+A EI+ QV + LG +I+NIV MGMGEPL N D Sbjct: 124 LGFKRNLSAAEIVDQVCQVQRDLGSRS---------------RITNIVFMGMGEPLANLD 168 Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILV 255 +V +++ + ++ G++FS RRITLST+G VP + R+G E V LA+SLHA N+LR L+ Sbjct: 169 SVLRAIRVIAEPNGMAFSHRRITLSTAGLVPQLRRLGRESPVNLAVSLHAAENELRAELM 228 Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINL 315 P+NR YPLE+L+ ACR YP L +RITFEY++L GIND P+ A L+K+L GI AK+NL Sbjct: 229 PVNRTYPLEVLMAACREYP-LPPRKRITFEYILLDGINDDPKQAKQLVKLLHGIRAKVNL 287 Query: 316 IPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +PFNP PG + ++ ++ F E ++ + ++ +R RG +I AACGQL Sbjct: 288 MPFNPHPGSVFRKPSEQRVLAFQEALQNARITTHVRRSRGGEIGAACGQL 337 >gi|264679426|ref|YP_003279333.1| radical SAM enzyme, Cfr family [Comamonas testosteroni CNB-2] gi|262209939|gb|ACY34037.1| radical SAM enzyme, Cfr family [Comamonas testosteroni CNB-2] Length = 369 Score = 273 bits (699), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 145/339 (42%), Positives = 197/339 (58%), Gaps = 20/339 (5%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R R +Q+++WI+ RG DF M+D+++ +R L I +V E +S DGT KWL Sbjct: 20 RFRATQLFRWIHQRGASDFDQMTDLAKSLREKLKSRAHITALPVVTEHVSADGTVKWLFD 79 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 +G +E+V+IPE RGTLCVSSQ GC++ C FC TG Q RNL EIL Q+ Sbjct: 80 -----VGDGNAVESVFIPEDDRGTLCVSSQAGCAVGCRFCSTGHQGFSRNLNTGEILAQL 134 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A L G ED R ISN+VMMGMGEPL N+ + +L + D G Sbjct: 135 WYAEHSLRKRFGTED----------RIISNVVMMGMGEPLQNYSALVPALRVMLDDHGYG 184 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S+RR+T+STSG VP + R+ ++ V LA+SLHA ++ LR+ LVP+N+KYP+ L+DAC Sbjct: 185 LSRRRVTVSTSGVVPMMDRLSQDCAVALAVSLHAPNDPLRDNLVPLNKKYPIAELLDACE 244 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP-----AKINLIPFNPWPGCEY 326 Y + ITFEY ML G+ND P A LI++++ K NLIPFNP+P Sbjct: 245 RYLEFAPRDFITFEYCMLDGVNDQPEHARQLIELVRARGDGKSWCKFNLIPFNPFPASGL 304 Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L S + F+ + +G + +R RG DI AACGQL Sbjct: 305 LRSPSARVTEFATLLSNAGIVTTVRKTRGDDIDAACGQL 343 >gi|120610108|ref|YP_969786.1| radical SAM protein [Acidovorax citrulli AAC00-1] gi|205829658|sp|A1TM24|RLMN_ACIAC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|120588572|gb|ABM32012.1| 23S rRNA m(2)A-2503 methyltransferase [Acidovorax citrulli AAC00-1] Length = 373 Score = 273 bits (698), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 148/358 (41%), Positives = 211/358 (58%), Gaps = 28/358 (7%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R R Q+++WI+ RG DF MSD+++ +R L+ + ++ E +S DGT KWL Sbjct: 24 RFRAVQLFRWIHQRGASDFARMSDLAKSLREKLSGCAHVAALPVISEHVSADGTVKWLFD 83 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 +G +E+V+IPE RGTLC+SSQ GC++ C FC TG Q RNLT+ EI+ Q+ Sbjct: 84 -----VGDGNAVESVFIPEDDRGTLCISSQAGCAVGCRFCSTGHQGFSRNLTSGEIVAQL 138 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A L G ++ R ISN+VMMGMGEPL N+ + +L D G Sbjct: 139 WFAEHALRARLGTQE----------RVISNVVMMGMGEPLQNYTALVPALRTMLDDHGYG 188 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S+RR+T+STSG VP + R+ ++ V +A+SLHA ++ LR+ LVP+NRKYPL L+DAC Sbjct: 189 LSRRRLTVSTSGVVPMMDRLSQDCAVAMAVSLHAPNDALRDQLVPLNRKYPLRELLDACT 248 Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILK-----GIPAKINLIPFNPWPGC 324 Y L +A R ITFEY ML G+ND P A LI +++ G+ K NLIPFNP+P Sbjct: 249 RY--LEHAPRDFITFEYCMLDGVNDQPEHARQLIDLVRPRGGEGVRCKFNLIPFNPFPAS 306 Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL----KSLSKRIPKVPRQ 378 S+ + + F++ + +G + +R RG DI AACGQL K ++ ++ RQ Sbjct: 307 GLHRSNPQQVAAFAKMLSDAGIVTTVRKTRGDDIDAACGQLAGDVKDRTRAAERMARQ 364 >gi|294340470|emb|CAZ88851.1| putative radical SAM enzyme, Cfr family, yfgB [Thiomonas sp. 3As] Length = 379 Score = 273 bits (698), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 151/368 (41%), Positives = 211/368 (57%), Gaps = 27/368 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 L +L+ R+ L E + G H R Q+++W++ +G+ DF+ MSD+++ +R Sbjct: 5 LTSTNLLQFDRDGLVEWFGRHG----HAAFRARQVFRWMHQKGVADFEAMSDLAKPLRQF 60 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +H I ++ E+ S DGT KWL +G +E V+IPE R TLCVSSQ G Sbjct: 61 LREHAHIAALPVLSEQRSADGTVKWLFD-----VGQGNAVEAVFIPEAQRNTLCVSSQAG 115 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLA----RSLLGDFPGCEDIEGMVIPSVGRKI 179 C++ C FC TG Q RNL EIL Q+ A R LG PG E R I Sbjct: 116 CAVNCKFCSTGHQGFSRNLQTWEILAQLWHAEFTMRRELG-LPGGE-----------RAI 163 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 SN+VMMGMGEPL N+ + +L D G S+RR+T+STSG VP I R+ ++ V L Sbjct: 164 SNVVMMGMGEPLQNYSALVPALRTMLDDDGYGLSRRRVTVSTSGVVPMIDRLSQDCPVAL 223 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA + LR+ LVP+NRKYPL L+ AC+ Y + ITFEY ML G+ND+P A Sbjct: 224 AVSLHAPVDALRDELVPLNRKYPLHELLAACKRYLDFAPRDFITFEYCMLDGVNDTPALA 283 Query: 300 LNLIKILKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 +L+++++ + K NLIPFNP+P S + F++ + +G + +R RG D Sbjct: 284 QDLVRLVRAAQVNCKFNLIPFNPFPQSGLKRSSAARVAAFAQVLLDAGLVTTVRKTRGDD 343 Query: 358 ILAACGQL 365 I AACGQL Sbjct: 344 IDAACGQL 351 >gi|152989809|ref|YP_001355531.1| hypothetical protein NIS_0057 [Nitratiruptor sp. SB155-2] gi|205829830|sp|A6Q115|RLMN_NITSB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|151421670|dbj|BAF69174.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2] Length = 355 Score = 273 bits (698), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 153/377 (40%), Positives = 228/377 (60%), Gaps = 42/377 (11%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++++ + +EEL++ + + R +QI++WIY +G +DF+ MS++ + +R L + Sbjct: 2 KNILDLTKEELQQEVTP--------KFRANQIYQWIYQKGAKDFESMSNLPKSMREELKE 53 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-------------SR 113 F+I P+I++ ++S DG++K+LL + +E+V +P K +R Sbjct: 54 KFTITPPKILNVEVSKDGSKKYLL-----GLQDGHTVESVLLPMKKEERDEKGNILKEAR 108 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 T+CVSSQVGC + C FC T VRNLT EI+ QVL R E IP Sbjct: 109 YTVCVSSQVGCKVGCEFCLTAKGGFVRNLTPGEIVEQVLTIR------------EDNNIP 156 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233 + R++ NIV MGMGEPL N +NV K++ I SD G+S S RR T+STSG P I ++GE Sbjct: 157 A-NRRV-NIVYMGMGEPLDNLENVAKAVKIFSDEHGMSISPRRQTISTSGLAPKIKKLGE 214 Query: 234 -EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 +GV+LAISLHAV ++LR L+PIN+ Y +E +I A + +P + +R+ FEY+M+K + Sbjct: 215 MNLGVLLAISLHAVDDELRQKLMPINKAYNIESVIQAVKEFP-IDQRKRVMFEYLMIKNL 273 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 ND + A L+K+L GI AK+NLI FNP+PG + + KD+ F + + G IR Sbjct: 274 NDDLKAAKKLVKLLHGIKAKVNLIYFNPYPGSPFQRPEPKDVEAFQKYLLDHGVLCTIRE 333 Query: 353 PRGLDILAACGQLKSLS 369 +GLDI AACGQLK S Sbjct: 334 SKGLDISAACGQLKEKS 350 >gi|220917417|ref|YP_002492721.1| radical SAM enzyme, Cfr family [Anaeromyxobacter dehalogenans 2CP-1] gi|219955271|gb|ACL65655.1| radical SAM enzyme, Cfr family [Anaeromyxobacter dehalogenans 2CP-1] Length = 372 Score = 273 bits (698), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 145/348 (41%), Positives = 210/348 (60%), Gaps = 17/348 (4%) Query: 20 ALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEK 79 A L G+ ++ R R Q+++W+++RG + ++D+ + +R L + + E E+ Sbjct: 20 AALIAGLGEKPFRAR--QVYRWLHLRGAASLEELTDVPRALRERLAEGTRLTTLERATEQ 77 Query: 80 ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV 139 S DGT KW R G IE+VY+PE R TLCVS+QVGC++ C+FC TGT L Sbjct: 78 RSADGTIKWTWR-----TGDGKLIESVYMPETDRKTLCVSTQVGCAVGCTFCMTGTMGLA 132 Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199 RNLT EI+ QV A L + E R ++N+V MGMGEPL N+ ++K Sbjct: 133 RNLTPGEIVDQVHRANRRLIELGEGEGP---------RPLTNLVFMGMGEPLANYRSLKV 183 Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINR 259 +L + G +FS R +T+STSG VP + R+GEE V LA+SL+A ++ R+ ++PINR Sbjct: 184 ALDLLLSEDGPNFSHRHVTVSTSGLVPVMRRLGEETQVKLAVSLNATTDAQRDAIMPINR 243 Query: 260 KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFN 319 +YPL L+ ACR +P + RRITFEYVML G+ND+P DA L ++L+GIPAK+NLIP+N Sbjct: 244 RYPLAELLRACREFP-MKQGRRITFEYVMLGGVNDAPEDAERLARLLRGIPAKVNLIPYN 302 Query: 320 PWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 PG + + F + + ++ +R RG DI AACGQL + Sbjct: 303 ENPGLGFAAPAPSAVERFRDLLVARNVTAVVRKNRGTDIAAACGQLAA 350 >gi|311105357|ref|YP_003978210.1| radical SAM superfamily protein 2 [Achromobacter xylosoxidans A8] gi|310760046|gb|ADP15495.1| radical SAM superfamily protein 2 [Achromobacter xylosoxidans A8] Length = 384 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 151/365 (41%), Positives = 213/365 (58%), Gaps = 9/365 (2%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +++ +L+G+ L E + K G R Q+ +W++ RG F M+D++++ Sbjct: 1 METVERINLLGLDGSALSELVGKWGGKP----FRARQLQRWMHQRGADSFDAMTDLARDF 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L QH I + E+ S DGTRKWL +G IETV+IPE RGTLC+SS Sbjct: 57 RGQLAQHCRIEALPVNIEQRSTDGTRKWLFD-----VGQGNAIETVFIPEDDRGTLCISS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC + C FC TG Q RNL EI+ Q+ A+ +L G +E R IS Sbjct: 112 QAGCVVNCRFCSTGHQGFNRNLKTSEIIGQLWWAKRVLEADIGTARLESARATEDTRVIS 171 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+D V +L + D S+RR+T+STSG VP + R+ ++ V LA Sbjct: 172 NVVMMGMGEPLLNYDQVLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPVALA 231 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++ LR+ LVP+N+KYPL+ L+ AC Y + ITFEY ML GIND+ + A Sbjct: 232 VSLHAPNDALRDELVPLNKKYPLKELLAACERYLAFAPRDFITFEYCMLDGINDTDQHAK 291 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 LI+I + + K+NLIPFNP+P S+ + F++ + +G + +R RG DI A Sbjct: 292 ELIQIARQLRCKLNLIPFNPFPESGLKRSNSARVKVFAQRLMDAGIITTVRKTRGDDIDA 351 Query: 361 ACGQL 365 ACGQL Sbjct: 352 ACGQL 356 >gi|296136235|ref|YP_003643477.1| radical SAM enzyme, Cfr family [Thiomonas intermedia K12] gi|295796357|gb|ADG31147.1| radical SAM enzyme, Cfr family [Thiomonas intermedia K12] Length = 379 Score = 273 bits (697), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 151/368 (41%), Positives = 211/368 (57%), Gaps = 27/368 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 L +L+ R+ L E + G H R Q+++W++ +G+ DF+ MSD+++ +R Sbjct: 5 LTSTNLLQFDRDGLVEWFGRHG----HAAFRARQVFRWMHQKGVADFEAMSDLAKPLRQF 60 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +H I ++ E+ S DGT KWL +G +E V+IPE R TLCVSSQ G Sbjct: 61 LREHAHIAALPVLSEQRSADGTVKWLFD-----VGQGNAVEAVFIPEAQRNTLCVSSQAG 115 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLA----RSLLGDFPGCEDIEGMVIPSVGRKI 179 C++ C FC TG Q RNL EIL Q+ A R LG PG E R I Sbjct: 116 CAVNCKFCSTGHQGFSRNLQTWEILAQLWHAEFTMRRELG-LPGGE-----------RAI 163 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 SN+VMMGMGEPL N+ + +L D G S+RR+T+STSG VP I R+ ++ V L Sbjct: 164 SNVVMMGMGEPLQNYSALVPALRTMLDDDGYGLSRRRVTVSTSGVVPMIDRLSQDCPVAL 223 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA + LR+ LVP+NRKYPL L+ AC+ Y + ITFEY ML G+ND+P A Sbjct: 224 AVSLHAPVDALRDELVPLNRKYPLHELLAACKRYLDFAPRDFITFEYCMLDGVNDTPALA 283 Query: 300 LNLIKILKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 +L+++++ + K NLIPFNP+P S + F++ + +G + +R RG D Sbjct: 284 EDLVRLVRAAQVNCKFNLIPFNPFPQSGLKRSSAARVAAFAQVLLDAGLVTTVRKTRGDD 343 Query: 358 ILAACGQL 365 I AACGQL Sbjct: 344 IDAACGQL 351 >gi|77919618|ref|YP_357433.1| ribosomal RNA large subunit methyltransferase N [Pelobacter carbinolicus DSM 2380] gi|123729427|sp|Q3A2Z4|RLMN_PELCD RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|77545701|gb|ABA89263.1| 23S rRNA m(2)A-2503 methyltransferase [Pelobacter carbinolicus DSM 2380] Length = 371 Score = 273 bits (697), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 153/355 (43%), Positives = 217/355 (61%), Gaps = 34/355 (9%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI--IY 72 EEL E L +G R R Q+ +W+Y R + DF MSD+S+ +R L+Q I + Sbjct: 19 EELTEFLAGMG----KERFRAGQVMRWMYHRLVDDFDAMSDLSKVLRAELHQRARISRLT 74 Query: 73 PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSFC 131 PE ++ S DGTRK+L R IE+V IP + +R TLC+S+QVGC++ C FC Sbjct: 75 PEATED--SRDGTRKYLFRLE-----DGETIESVRIPMDDNRATLCISTQVGCAMGCVFC 127 Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191 +TG+ LVRNLT EI+ QV A L D P ++NIV+MGMGEPL Sbjct: 128 HTGSFGLVRNLTPGEIVNQVCAA---LADGP----------------VNNIVLMGMGEPL 168 Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLR 251 N DNV K+L I GL +S R++TLST+G VP + +G+ + V LA+SL+A ++++R Sbjct: 169 HNLDNVVKALQILYMPQGLDYSPRKVTLSTAGLVPQMQELGKRVRVNLAVSLNATTDEVR 228 Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311 N L+P+N++YPL+ L+ ACR YP L +RITFEY++++ +NDS +DA L+K+L GI A Sbjct: 229 NRLMPVNQRYPLQQLMAACRQYP-LHAKKRITFEYILIRDVNDSDQDARRLVKLLHGIKA 287 Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 K+N+IPFN E+ ++ I F + G + R +G DI AACGQLK Sbjct: 288 KVNIIPFNEHSASEFRAPTEERISRFQGYLLDHGMVAIRRASKGQDISAACGQLK 342 >gi|27904760|ref|NP_777886.1| hypothetical protein bbp265 [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|46397192|sp|Q89AK8|RLMN_BUCBP RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|27904157|gb|AAO26991.1| conserved hypothetical protein [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 373 Score = 273 bits (697), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 154/365 (42%), Positives = 212/365 (58%), Gaps = 22/365 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + +++ IG + R Q+ KWIY DF M++IS ++R L+ Sbjct: 16 KTNLLNFDLQSMKKFFCSIG----ELEFRAQQVMKWIYQHYCDDFNKMTNISLQLRKKLS 71 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I P+ ++ K+S DGT KW + +CI ETV IP+ R TLC+SSQ+GCS Sbjct: 72 TLCCITPPKFLNHKVSVDGTMKWSVVIGNQCI------ETVCIPKNQRTTLCISSQLGCS 125 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q +NL EI+ QV + L+ F ++ KI+N+V+M Sbjct: 126 LACSFCLTGQQGFNKNLNVSEIIGQVWYIQKLIY-FSK---------INITNKITNVVLM 175 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N NV +L I D GL+ SK ITLST+G VP + ++ I V LA+SLHA Sbjct: 176 GMGEPLLNLSNVVHALRIMLDEFGLNMSKNHITLSTAGIVPALKKLHTMIDVSLAVSLHA 235 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA--RRITFEYVMLKGINDSPRDALNLI 303 +N +RN L+PIN+KY +E ++ A + Y SNA +R+T EYVML GIND+ A L Sbjct: 236 SNNTIRNQLMPINKKYNIESVLCAIKKYLYYSNANKKRVTIEYVMLSGINDAAYHAEELF 295 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LK IP KINLIP+N + G Y+CS+ I F+ + + G IR RG DI AACG Sbjct: 296 NLLKSIPHKINLIPWNHFSGSNYICSNDITINNFANILIKKGCIVTIRKIRGYDINAACG 355 Query: 364 QLKSL 368 QL + Sbjct: 356 QLSGI 360 >gi|241764492|ref|ZP_04762513.1| radical SAM enzyme, Cfr family [Acidovorax delafieldii 2AN] gi|241366076|gb|EER60673.1| radical SAM enzyme, Cfr family [Acidovorax delafieldii 2AN] Length = 373 Score = 273 bits (697), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 154/360 (42%), Positives = 209/360 (58%), Gaps = 25/360 (6%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R R +Q+++WI+ RG DF MSD++ +R L + ++ E +S DGT KWL Sbjct: 24 RFRATQLFRWIHQRGASDFDAMSDLAVALRTKLKGCAFVQALPVISEHVSADGTVKWLFD 83 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 +G +E+V+IPE RGTLCVSSQ GC++ C FC TG Q RNLT EI+ Q+ Sbjct: 84 -----VGDGNAVESVFIPEDDRGTLCVSSQAGCAVGCRFCSTGHQGFSRNLTTGEIVAQL 138 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A L + + R ISN+VMMGMGEPL N+ + +L + D G Sbjct: 139 WFAEHALRK----------RLATQSRVISNVVMMGMGEPLQNYTALVPALRVMLDDHGYG 188 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S+RR+T+STSG VP + R+ ++ V LA+SLHA ++ LR+ LVP+NRKYPLE L+DACR Sbjct: 189 LSRRRVTVSTSGVVPMMDRLSQDCPVALAVSLHAPNDALRDNLVPLNRKYPLEELLDACR 248 Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKIL---KGIP--AKINLIPFNPWPGC 324 Y L +A R ITFEY ML G+ND A LI ++ +G+P K NLIPFNP+P Sbjct: 249 RY--LEHAPRDFITFEYCMLDGVNDQVEHARQLIALVNPAQGVPIRCKFNLIPFNPFPAS 306 Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK-SLSKRIPKVPRQEMQIT 383 L S + F++ + +G + +R RG DI AACGQL + R V R Q T Sbjct: 307 GLLRSPSAQVAMFAKVLSDAGIVTTVRKTRGDDIDAACGQLAGDVKDRTRAVERMAKQRT 366 >gi|281601919|gb|ADA74903.1| protein yfgB [Shigella flexneri 2002017] Length = 340 Score = 273 bits (697), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 153/345 (44%), Positives = 204/345 (59%), Gaps = 19/345 (5%) Query: 40 KWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG 99 KW+Y +F M+DI++ +R L + I PE+V+E+ S DGT KW + G Sbjct: 3 KWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAV------G 56 Query: 100 PVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLG 159 +ETVYIPE R TLCVSSQVGC+L C FC T Q RNL EI+ QV A ++G Sbjct: 57 DQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG 116 Query: 160 DFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITL 219 + G R I+N+VMMGMGEPL N +NV ++ I D G SKRR+TL Sbjct: 117 ----AAKVTGQ------RPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTL 166 Query: 220 STSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279 STSG VP + ++G+ I V LAISLHA ++++R+ +VPIN+KY +E + A R Y SNA Sbjct: 167 STSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNA 226 Query: 280 R--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTF 337 R+T EYVML +ND A L ++LK P KINLIP+NP+P Y S I F Sbjct: 227 NQGRVTIEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFPDAPYGRSSNSRIDRF 286 Query: 338 SECIKRSGYSSPIRTPRGLDILAACGQLK-SLSKRIPKVPRQEMQ 381 S+ + G+++ +R RG DI AACGQL + R + R+ MQ Sbjct: 287 SKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKRMQ 331 >gi|118578868|ref|YP_900118.1| ribosomal RNA large subunit methyltransferase N [Pelobacter propionicus DSM 2379] gi|205829797|sp|A1AL40|RLMN_PELPD RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|118501578|gb|ABK98060.1| 23S rRNA m(2)A-2503 methyltransferase [Pelobacter propionicus DSM 2379] Length = 347 Score = 273 bits (697), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 149/342 (43%), Positives = 209/342 (61%), Gaps = 30/342 (8%) Query: 28 QRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ--HFSIIYPEIVDEKISCDGT 85 Q R R +Q++KWIY R FQ M++IS+++R L + S + PE V+ + DGT Sbjct: 22 QGKERFRATQVFKWIYQHDARSFQEMTNISKDLRAELEAKAYISNLEPEAVE--VGGDGT 79 Query: 86 RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAE 145 RK+L + +E+V IP++ R TLC+SSQVGC++ C+FC TGT +L RNLT Sbjct: 80 RKYLF-----GLEDGNSVESVLIPDEGRNTLCISSQVGCAMGCAFCLTGTFRLTRNLTTA 134 Query: 146 EILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS 205 EI+ Q++ R D+E I NIVMMGMGEPL N DNV ++ I Sbjct: 135 EIVNQIMAVR---------RDVE----------IRNIVMMGMGEPLHNLDNVIPAIHIMI 175 Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLE 264 D GL S RR+T+ST G P + R+G E+ V LA+SL+A +++LR+ ++PINR+YPL+ Sbjct: 176 DGNGLQLSNRRVTVSTCGLAPEMERLGRELPNVNLAVSLNATTDELRDRIMPINRRYPLK 235 Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGC 324 L+ ACR +P L R++TFEYVML G+ND+ DA L+++ IP K+NLIPFN + GC Sbjct: 236 ELLSACREFP-LPGRRKVTFEYVMLGGLNDTLEDAKRLLRLTSDIPNKVNLIPFNEFQGC 294 Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 E+ + I F + + + R RG DI AACGQLK Sbjct: 295 EFRSPTRAAIDAFHKYLIDRHVTVITRDSRGSDISAACGQLK 336 >gi|197122634|ref|YP_002134585.1| radical SAM enzyme, Cfr family [Anaeromyxobacter sp. K] gi|196172483|gb|ACG73456.1| radical SAM enzyme, Cfr family [Anaeromyxobacter sp. K] Length = 372 Score = 272 bits (696), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 145/348 (41%), Positives = 209/348 (60%), Gaps = 17/348 (4%) Query: 20 ALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEK 79 A L G+ ++ R R Q+++W+++RG + M+D+ + +R L + + E E+ Sbjct: 20 AALIAGLGEKPFRAR--QVYRWLHLRGAASLEEMTDVPRALRERLAEGTRLTTLERATEQ 77 Query: 80 ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV 139 S DGT KW R G IE+VY+PE R TLCVS+QVGC++ C+FC TGT L Sbjct: 78 RSADGTIKWTWR-----TGDGKLIESVYMPETDRKTLCVSTQVGCAVGCTFCMTGTMGLA 132 Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199 RNL EI+ QV A L + E R ++N+V MGMGEPL N+ ++K Sbjct: 133 RNLGPGEIVDQVHRANRRLIELGEGEGP---------RPLTNLVFMGMGEPLANYRSLKV 183 Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINR 259 +L + G +FS R +T+STSG VP + R+GEE V LA+SL+A ++ R+ ++PINR Sbjct: 184 ALDLLLSEDGPNFSHRHVTVSTSGLVPVMRRLGEETQVKLAVSLNATTDAQRDAIMPINR 243 Query: 260 KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFN 319 +YPL L+ ACR +P + RRITFEYVML G+ND+P DA L ++L+GIPAK+NLIP+N Sbjct: 244 RYPLAELLRACREFP-MKQGRRITFEYVMLGGVNDAPEDAERLARLLRGIPAKVNLIPYN 302 Query: 320 PWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 PG + + F + + ++ +R RG DI AACGQL + Sbjct: 303 ENPGLGFAAPAPAAVERFRDLLVARNVTAVVRKNRGTDIAAACGQLAA 350 >gi|119944920|ref|YP_942600.1| hypothetical protein Ping_1165 [Psychromonas ingrahamii 37] gi|205829827|sp|A1SU36|RLMN_PSYIN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|119863524|gb|ABM03001.1| radical SAM enzyme, Cfr family protein [Psychromonas ingrahamii 37] Length = 372 Score = 272 bits (696), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 152/364 (41%), Positives = 211/364 (57%), Gaps = 22/364 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +KK +L+ + RE L +++G R Q+ KWIY G DF MS++++++R Sbjct: 3 IKKVNLLDLNREGLRAFFVELG----EKPFRAEQVMKWIYHYGCEDFDLMSNVNKKLRQK 58 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L + I+ PEI E+ S DGT KW + G E+ETVYIPEK R TLC+SSQVG Sbjct: 59 LKECAEIVAPEIKVEQRSNDGTIKWAMTV------GDQEVETVYIPEKDRATLCISSQVG 112 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C L C+FC T Q RNL+ EI+ QV A ++G + S R I+N+V Sbjct: 113 CVLACNFCSTAQQGFNRNLSVSEIIGQVWRAAKIVG----------VTGESGKRPITNVV 162 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N +N+ ++ + D G + SKRR+T+STSG VP + +G+ I V LAISL Sbjct: 163 MMGMGEPLLNLNNLIPAMELMLDDFGYALSKRRVTVSTSGVVPALDILGDRIDVSLAISL 222 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALN 301 HA ++ LR+ ++PIN KY + + + Y S A R + EY++L NDS A Sbjct: 223 HAANDTLRSQMMPINDKYNIADFLAGVKRYIAKSKANRGKVYIEYLLLDHFNDSTDQAHE 282 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L +LK P KINLIPFNP+PG +Y + F++ + GY+ +R RG DI AA Sbjct: 283 LAILLKDTPCKINLIPFNPFPGNDYQKPSNSRVDRFNKVLMEYGYTVTVRKTRGDDIDAA 342 Query: 362 CGQL 365 CGQL Sbjct: 343 CGQL 346 >gi|71278436|ref|YP_270905.1| ribosomal RNA large subunit methyltransferase N [Colwellia psychrerythraea 34H] gi|123774847|sp|Q47WB7|RLMN_COLP3 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|71144176|gb|AAZ24649.1| radical SAM enzyme, Cfr family [Colwellia psychrerythraea 34H] Length = 386 Score = 272 bits (696), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 158/361 (43%), Positives = 211/361 (58%), Gaps = 20/361 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + + E L IG R QI KWIY G DF+ M++I++++R L Sbjct: 7 KVNLLNFDHKSMREYLESIG----EKPFRADQIMKWIYHFGYSDFEQMTNINKKLREKLQ 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++ I P+I ++++S DGT K+ L+ G E+ETV+IPE R TLCVSSQVGC+ Sbjct: 63 RNCIISAPDISEKQVSEDGTIKYALKLE-----GGQEVETVWIPENDRATLCVSSQVGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC T Q RNL+ EI+ QV + +G I G R I+NIVMM Sbjct: 118 LECTFCATAQQGFNRNLSMAEIIGQVWRVANDIG----ATRIAGT------RPITNIVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N N+ +L + +G SKRR+T+STSG VP + + +I LAIS+HA Sbjct: 168 GMGEPLLNMKNLIPALDTMLNDLGYGLSKRRVTVSTSGVVPALDMLKAKIDCALAISIHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDAC-RHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 +N LR+ LVPIN+KYPLE I A R+ G ++ T EYVML +NDS A L Sbjct: 228 PNNKLRDELVPINKKYPLEDFIAAAGRYIEGSKANKQATIEYVMLDHVNDSTDQAHELAH 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 LKG+P+KINLIPFNP+PG Y S I F + ++ G + R RG DI AACGQ Sbjct: 288 ALKGLPSKINLIPFNPYPGSPYSRSSNSRIDRFDKVLQSYGLTVITRRTRGEDIDAACGQ 347 Query: 365 L 365 L Sbjct: 348 L 348 >gi|326316277|ref|YP_004233949.1| radical SAM enzyme, Cfr family [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373113|gb|ADX45382.1| radical SAM enzyme, Cfr family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 373 Score = 272 bits (696), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 148/358 (41%), Positives = 210/358 (58%), Gaps = 28/358 (7%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R R Q+++WI+ RG DF MSD+++ +R L+ + ++ E +S DGT KWL Sbjct: 24 RFRAVQLFRWIHQRGASDFARMSDLAKSLREKLSGCAHVAALPVISEHVSADGTVKWLFD 83 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 +G +E+V+IPE RGTLC+SSQ GC++ C FC TG Q RNLT+ EI+ Q+ Sbjct: 84 -----VGDGNAVESVFIPEDDRGTLCISSQAGCAVGCRFCSTGHQGFSRNLTSGEIVAQL 138 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A L G ++ R ISN+VMMGMGEPL N+ + +L D G Sbjct: 139 WFAEHALRARLGTQE----------RVISNVVMMGMGEPLQNYTALVPALRTMLDDHGYG 188 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S+RR+T+STSG VP + R+ ++ V +A+SLHA ++ LR+ LVP+NRKYPL L+DAC Sbjct: 189 LSRRRLTVSTSGVVPMMDRLSQDCAVAMAVSLHAPNDALRDQLVPLNRKYPLRELLDACT 248 Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILK-----GIPAKINLIPFNPWPGC 324 Y L +A R ITFEY ML G+ND P A LI +++ G+ K NLIPFNP+P Sbjct: 249 RY--LEHAPRDFITFEYCMLDGVNDQPEHARQLIDLVRPRGAEGVRCKFNLIPFNPFPAS 306 Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL----KSLSKRIPKVPRQ 378 S+ + F++ + +G + +R RG DI AACGQL K ++ ++ RQ Sbjct: 307 GLHRSNPGQVAAFAKLLSDAGIVTTVRKTRGDDIDAACGQLAGDVKDRTRAAERMARQ 364 >gi|218782479|ref|YP_002433797.1| radical SAM enzyme, Cfr family [Desulfatibacillum alkenivorans AK-01] gi|218763863|gb|ACL06329.1| radical SAM enzyme, Cfr family [Desulfatibacillum alkenivorans AK-01] Length = 359 Score = 271 bits (694), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 145/338 (42%), Positives = 213/338 (63%), Gaps = 22/338 (6%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93 R QI +W+Y R F M+++++ R LL+ HF+I +I+ + S DG+RK+L + Sbjct: 31 RAFQILQWVYQRQADSFDVMTNLAKRHRQLLSDHFTIGRLKILQTQDSSDGSRKFLFQ-- 88 Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153 C G IETV IPEK TLCVS+QVGC++ C FC T + L R+L A EI+ Q+ Sbjct: 89 --CADG-ASIETVLIPEKGHHTLCVSTQVGCAMGCKFCCTASMGLTRSLQANEIISQIRD 145 Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS-MGLSF 212 ++ + ED E + N+V MGMGEPL N+DNVK+++ I +D+ GL F Sbjct: 146 VQATM------EDPE---------HLRNLVFMGMGEPLANWDNVKQAMDIITDNDWGLRF 190 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S RR+T+ST G VP +A VG++ V LA+SL+A N++R+ ++P+N+K+P+E L+ AC+ Sbjct: 191 SGRRVTISTVGLVPKMAAVGKDTRVKLAVSLNAPDNEIRDQIMPVNKKHPIEELLQACKD 250 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 +P L RR+TFEYV+LKG+NDSP A L K+L P KINLIP+NP + D + Sbjct: 251 FP-LRPGRRVTFEYVLLKGVNDSPAHARKLGKLLAHQPCKINLIPYNPHENSPFERPDPE 309 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 + F + + Y+ +R +GLDI AACGQLK+ ++ Sbjct: 310 AVDAFYKVLMDKNYTVIVRHSKGLDIKAACGQLKAANQ 347 >gi|94268941|ref|ZP_01291330.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93451405|gb|EAT02257.1| conserved hypothetical protein [delta proteobacterium MLMS-1] Length = 345 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 149/338 (44%), Positives = 199/338 (58%), Gaps = 23/338 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI+ W+Y DF M+DI++ VR LL + + E+ S DGT K+ R Sbjct: 28 FRARQIFSWLYRPDFSDFAQMTDIAKHVRALLAEKATFSRLAAAKEEHSTDGTVKFAFRL 87 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + IE+V IPE+ R TLCVSSQVGC++ C+FC TGT +RNLT E++ QV Sbjct: 88 SDGHL-----IESVLIPEEDRHTLCVSSQVGCAMGCNFCLTGTMGFIRNLTVAEMVGQVD 142 Query: 153 LARSLL---GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209 A L G G +++N+V MGMGEPL NFDN+ K+++I + G Sbjct: 143 QAAHWLWQRGARSG--------------RLNNLVFMGMGEPLLNFDNLIKAINILMEQRG 188 Query: 210 LSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 S RRIT+ST G VP + +GE++ V LA+SLHA + R L+P+NR YPL L+ A Sbjct: 189 HDLSGRRITVSTCGIVPRMKELGEKVPVNLAVSLHAADHATREQLMPVNRTYPLAELLQA 248 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 CR YP L RRI EY +L GINDSP A L+K L GI KIN++PFN P Y C Sbjct: 249 CRQYP-LPPRRRIMIEYALLAGINDSPAAARLLVKQLHGIRCKINILPFNETPAFPYRCP 307 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 D I F + ++R+G+++ +RT RG DI AACGQL + Sbjct: 308 DPATIEAFRQILRRAGHTTLLRTSRGADIAAACGQLAA 345 >gi|237745509|ref|ZP_04575989.1| radical SAM enzyme [Oxalobacter formigenes HOxBLS] gi|229376860|gb|EEO26951.1| radical SAM enzyme [Oxalobacter formigenes HOxBLS] Length = 387 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 152/358 (42%), Positives = 213/358 (59%), Gaps = 20/358 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ G+ DF GM+D+++ +R L + P+++ + +S DGTRKWLL Sbjct: 28 FRAKQLQRWIHQSGVSDFAGMTDLAKSLRGKLEGCAEVRAPKVLKDHLSADGTRKWLLD- 86 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G IETVYIPE +RGTLCVS+Q GC++ C FC TG Q RNLT +EI+ Q+ Sbjct: 87 ----VGEGNAIETVYIPEDNRGTLCVSTQAGCAVNCLFCSTGKQGFSRNLTTDEIIGQLW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 +A + + M R+ISN+VMMGMGEPL NFD +L + D Sbjct: 143 MAEFAI------RRSKNMAANQSERQISNVVMMGMGEPLFNFDASVNALKLMLDDNAYGL 196 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+T+STSG VP I R+ +E V LA+SLHA S+ LR++LVP+NRK+PL L+ ACR Sbjct: 197 SRRRVTVSTSGVVPMIDRLAKECPVALAVSLHAPSDKLRDMLVPLNRKHPLSELMAACRR 256 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG----IPAKINLIPFN--PWPGCEY 326 Y + ITFEY ML GIND+ A L++++K + K+NLIPFN P PG + Sbjct: 257 YLEYAPRDFITFEYCMLDGINDTDEHAKELVELVKHGSDPVSCKLNLIPFNSIPMPGLKR 316 Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQITG 384 S I F++ + +G + +R RG DI AACG L + +V R+ M +G Sbjct: 317 --SSDARISAFAKILLDAGIVTTVRKTRGEDIEAACGLLAGDVRDRTRV-RERMAESG 371 >gi|85859749|ref|YP_461951.1| radical SAM protein [Syntrophus aciditrophicus SB] gi|123752486|sp|Q2LUM5|RLMN_SYNAS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|85722840|gb|ABC77783.1| radical SAM family enzyme [Syntrophus aciditrophicus SB] Length = 348 Score = 271 bits (693), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 149/363 (41%), Positives = 215/363 (59%), Gaps = 27/363 (7%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 M EE+E + +G + R QI KW+Y +G + F M+ +S+ VR LN+ I Sbjct: 11 MSLEEIESFISSLG----KEKYRARQIMKWLYSQGAKSFDEMTTLSRAVRDQLNEMACIT 66 Query: 72 YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131 PEI + S DGTRK L R IE+V IP K T C+S+QVGC + C FC Sbjct: 67 LPEIARVQQSSDGTRKILFRLQDNSF-----IESVLIPGKHNWTACISTQVGCHMGCRFC 121 Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191 +T Q RNL EI Q+ + + L + P +I NIVMMGMGEPL Sbjct: 122 FTARQGFRRNLKPSEITGQLTMLQFYLPEGP---------------EIKNIVMMGMGEPL 166 Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLR 251 N+ N K++ I + GL FS R+ITLSTSG P I ++G ++ + LAISL+A ++ +R Sbjct: 167 ANYRNTLKAIRIITSDYGLGFSTRKITLSTSGITPMIEQLGRDLCINLAISLNAPTDSIR 226 Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311 + L+P+NRKYPL+ L+ ACR+YP + R +TFEY+++ G+N SP A L ++LKGI Sbjct: 227 SELMPVNRKYPLDRLLQACRNYP-MPGRRMLTFEYILIDGVNSSPAHAEMLCRLLKGIRC 285 Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLS 369 K+NLI FN +P C + ++ ++ F + + + Y++ IR RG DILAACGQL K+L Sbjct: 286 KLNLIRFNEFPDCPFKTPSEETVLAFQQILVKHHYTAIIRASRGRDILAACGQLSGKALE 345 Query: 370 KRI 372 +++ Sbjct: 346 EKL 348 >gi|205829861|sp|A9BMV6|RLMN_DELAS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase Length = 374 Score = 271 bits (692), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 148/356 (41%), Positives = 203/356 (57%), Gaps = 23/356 (6%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R R +Q+++WI+ RG DF MSD+++ +R L I ++ E +S DGT KWL Sbjct: 24 RFRATQLFRWIHQRGASDFDQMSDLAKSLREKLKACAHITALPVLTEHVSADGTVKWLFD 83 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 +GG +E V+IPE RGTLCVSSQ GC++ C FC TG Q RNL+ EIL Q+ Sbjct: 84 -----VGGGDAVEAVFIPEDDRGTLCVSSQAGCAVGCRFCSTGHQGFSRNLSTGEILAQL 138 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A L G R ISN+VMMGMGEPL N+ + +L D G Sbjct: 139 WYAEHSLRKRLGT---------GGERVISNVVMMGMGEPLQNYTALVPALRAMLDDHGYG 189 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S+RR+T+STSG VP I R+ ++ V +A+SLHA +++LR+ LVP+NRKYP+ L+DAC Sbjct: 190 LSRRRVTVSTSGVVPMIDRLSQDCAVAMAVSLHAPNDELRDPLVPLNRKYPIHELLDACE 249 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP-----AKINLIPFNPWPGCEY 326 Y + ITFEY ML G+ND P A LI++++ K NLIPFNP+P Sbjct: 250 RYLEFAPRDFITFEYCMLDGVNDQPEHARQLIELVRARGDGRSWCKFNLIPFNPFPASGL 309 Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL----KSLSKRIPKVPRQ 378 L S + F+ + +G + +R RG DI AACGQL K ++ ++ RQ Sbjct: 310 LRSPAARVTEFASLLSNAGIVTTVRKTRGDDIDAACGQLAGDVKDRTRAAERMARQ 365 >gi|121604771|ref|YP_982100.1| radical SAM protein [Polaromonas naphthalenivorans CJ2] gi|205829800|sp|A1VNF1|RLMN_POLNA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|120593740|gb|ABM37179.1| 23S rRNA m(2)A-2503 methyltransferase [Polaromonas naphthalenivorans CJ2] Length = 382 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 143/339 (42%), Positives = 199/339 (58%), Gaps = 20/339 (5%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R R +Q+++WI+ +G DF+ M+D+++ +R L I +V S DGT KWL Sbjct: 24 RFRATQLFRWIHQKGASDFEQMTDLAKSLREKLAVSAHIQGLNVVSRHESADGTIKWLFD 83 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 +G IETV+IPE RGTLC+SSQ GC++ C FC TG Q RNLT EI+ Q+ Sbjct: 84 -----VGAGDVIETVFIPETDRGTLCISSQAGCAVGCRFCSTGHQGFSRNLTTGEIISQL 138 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A L G + R ISN+VMMGMGEPL N+ + +L + + G Sbjct: 139 WFAEHFLRKHLGRNE----------RVISNVVMMGMGEPLQNYSQLLPALKVMLNDHGYG 188 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S+RR+T+STSG VP I R+ ++ V LA+SLHA + LR+ LVP+N+KYP+ L++AC Sbjct: 189 LSRRRVTVSTSGVVPMIDRLAKDCPVALAVSLHAPQDALRSNLVPLNKKYPIAELLEACT 248 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK-----GIPAKINLIPFNPWPGCEY 326 Y + ITFEY ML G+ND P A L+ ++K G+ K NLIPFNP+P Sbjct: 249 RYQSAAPRDFITFEYCMLDGVNDQPEHARQLVALMKTHAANGLSCKFNLIPFNPFPASGL 308 Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L SD ++ F++ + +G + +R RG DI AACGQL Sbjct: 309 LRSDMPQVMAFAKILMDAGIITTVRKTRGDDIDAACGQL 347 >gi|319941514|ref|ZP_08015841.1| ribosomal RNA large subunit methyltransferase N [Sutterella wadsworthensis 3_1_45B] gi|319804988|gb|EFW01827.1| ribosomal RNA large subunit methyltransferase N [Sutterella wadsworthensis 3_1_45B] Length = 400 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 150/355 (42%), Positives = 212/355 (59%), Gaps = 18/355 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +W++ + DF M+D+++ R L + I PE++ EK S DGTRKWL Sbjct: 47 FRARQLTRWVHRHLVCDFNEMTDLAKTFRAKLLKLAEIRPPEVIHEKKSSDGTRKWLF-- 104 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +E V+IPE RGTLC+SSQ GC++ C FC TG Q RNLT EI+ Q+ Sbjct: 105 ---AVGNGNAVEAVFIPEDDRGTLCISSQAGCAMGCLFCSTGKQGFNRNLTTAEIVGQLW 161 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A L C D G+ P+ R ISN+V+MGMGEPL N D V ++ I D G Sbjct: 162 TAEREL-----CRD-RGITDPN-DRVISNVVLMGMGEPLQNLDAVIPAIKIFLDDDGYGL 214 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+T+STSG V I ++ E V LA+SLHA + LR+ L+PIN+K+PL L+ ACR Sbjct: 215 SRRRVTVSTSGLVRQIDKLAEAAPVALAVSLHAADDGLRDKLMPINKKHPLGDLMAACRR 274 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILK--GIPAKINLIPFNPWPGCEYLCSD 330 Y ++ ITFEYVML GINDS DA +L +++ +P K NLIPFNP+P + D Sbjct: 275 YLRVAPRDFITFEYVMLGGINDSLADADHLAALVRREHVPCKFNLIPFNPFPQSDLEKPD 334 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL----KSLSKRIPKVPRQEMQ 381 ++ ++ F + GY + +R RG DI AACGQL + ++R ++ +Q+ + Sbjct: 335 REKVLAFCRRLNELGYVTTVRKTRGDDIDAACGQLAGEVRDRTRRAERLAQQKAE 389 >gi|160900454|ref|YP_001566036.1| radical SAM protein [Delftia acidovorans SPH-1] gi|160366038|gb|ABX37651.1| radical SAM enzyme, Cfr family [Delftia acidovorans SPH-1] Length = 397 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 148/356 (41%), Positives = 203/356 (57%), Gaps = 23/356 (6%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R R +Q+++WI+ RG DF MSD+++ +R L I ++ E +S DGT KWL Sbjct: 47 RFRATQLFRWIHQRGASDFDQMSDLAKSLREKLKACAHITALPVLTEHVSADGTVKWLFD 106 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 +GG +E V+IPE RGTLCVSSQ GC++ C FC TG Q RNL+ EIL Q+ Sbjct: 107 -----VGGGDAVEAVFIPEDDRGTLCVSSQAGCAVGCRFCSTGHQGFSRNLSTGEILAQL 161 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A L G R ISN+VMMGMGEPL N+ + +L D G Sbjct: 162 WYAEHSLRKRLGT---------GGERVISNVVMMGMGEPLQNYTALVPALRAMLDDHGYG 212 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S+RR+T+STSG VP I R+ ++ V +A+SLHA +++LR+ LVP+NRKYP+ L+DAC Sbjct: 213 LSRRRVTVSTSGVVPMIDRLSQDCAVAMAVSLHAPNDELRDPLVPLNRKYPIHELLDACE 272 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP-----AKINLIPFNPWPGCEY 326 Y + ITFEY ML G+ND P A LI++++ K NLIPFNP+P Sbjct: 273 RYLEFAPRDFITFEYCMLDGVNDQPEHARQLIELVRARGDGRSWCKFNLIPFNPFPASGL 332 Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL----KSLSKRIPKVPRQ 378 L S + F+ + +G + +R RG DI AACGQL K ++ ++ RQ Sbjct: 333 LRSPAARVTEFASLLSNAGIVTTVRKTRGDDIDAACGQLAGDVKDRTRAAERMARQ 388 >gi|121593579|ref|YP_985475.1| radical SAM protein [Acidovorax sp. JS42] gi|205829704|sp|A1W574|RLMN_ACISJ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|120605659|gb|ABM41399.1| 23S rRNA m(2)A-2503 methyltransferase [Acidovorax sp. JS42] Length = 374 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 152/352 (43%), Positives = 205/352 (58%), Gaps = 25/352 (7%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R R +Q+++WI+ RG DF MSD+++ +R L + + + E +S DGT KWL Sbjct: 24 RFRATQLFRWIHQRGASDFDQMSDLAKSLREKLRGCAHVAGLQAISEHVSADGTVKWLFD 83 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 +G +ETV+IPE RGTLC+SSQ GC++ C FC TG Q RNLT EIL Q+ Sbjct: 84 -----VGDGNAVETVFIPEDDRGTLCISSQAGCAVGCRFCSTGHQGFSRNLTTGEILAQL 138 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A L G D E R ISN+VMMGMGEPL N+ + +L + D G Sbjct: 139 WYAEHALRQRRG--DGE--------RVISNVVMMGMGEPLQNYAALVPALRVMLDDHGYG 188 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S+RR+T+STSG VP + R+ ++ V LA+SLHA ++ LR+ LVP+NRKYPL L+ ACR Sbjct: 189 LSRRRVTVSTSGVVPMMDRLAQDCPVALAVSLHAPNDVLRDNLVPLNRKYPLHELLAACR 248 Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKIL------KGIPAKINLIPFNPWPG 323 Y L +A R ITFEY ML+G+ND P A LI ++ G+ K NLIPFNP+P Sbjct: 249 RY--LDHAPRDFITFEYCMLEGVNDQPEHARQLIDLVGRKAADGGVSCKFNLIPFNPFPA 306 Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKV 375 S + F++ + +G + +R RG DI AACGQL K +V Sbjct: 307 SGLRRSPPAAVTAFAQLLSDAGIVTTVRKTRGDDIDAACGQLAGDVKDRTRV 358 >gi|222110300|ref|YP_002552564.1| radical sam enzyme, cfr family [Acidovorax ebreus TPSY] gi|221729744|gb|ACM32564.1| radical SAM enzyme, Cfr family [Acidovorax ebreus TPSY] Length = 383 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 149/350 (42%), Positives = 202/350 (57%), Gaps = 21/350 (6%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R R +Q+++WI+ RG DF MSD+++ +R L + + + E +S DGT KWL Sbjct: 33 RFRATQLFRWIHQRGASDFDQMSDLAKSLREKLRGCAHVAGLQAISEHVSADGTVKWLFD 92 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 +G +ETV+IPE RGTLC+SSQ GC++ C FC TG Q RNLT EIL Q+ Sbjct: 93 -----VGDGNAVETVFIPEDDRGTLCISSQAGCAVGCRFCSTGHQGFSRNLTTGEILAQL 147 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A L G D E R ISN+VMMGMGEPL N+ + +L + D G Sbjct: 148 WYAEHALRQRRG--DGE--------RVISNVVMMGMGEPLQNYAALVPALRVMLDDHGYG 197 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S+RR+T+STSG VP + R+ ++ V LA+SLHA ++ LR+ LVP+NRKYPL L+ ACR Sbjct: 198 LSRRRVTVSTSGVVPMMDRLAQDCPVALAVSLHAPNDVLRDNLVPLNRKYPLHELLAACR 257 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL------KGIPAKINLIPFNPWPGCE 325 Y + ITFEY ML+G+ND P A LI ++ G+ K NLIPFNP+P Sbjct: 258 RYLDHAPRDFITFEYCMLEGVNDQPEHARQLIDLVGRKAADGGVSCKFNLIPFNPFPASG 317 Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKV 375 S + F++ + +G + +R RG DI AACGQL K +V Sbjct: 318 LRRSPPAAVTAFAQLLSDAGIVTTVRKTRGDDIDAACGQLAGDVKDRTRV 367 >gi|213621172|ref|ZP_03373955.1| hypothetical protein SentesTyp_28162 [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 315 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 150/328 (45%), Positives = 196/328 (59%), Gaps = 18/328 (5%) Query: 40 KWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG 99 KW+Y +F M+DI++ +R L + I PE+V+E+ S DGT KW + G Sbjct: 1 KWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAV------G 54 Query: 100 PVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLG 159 +ETVYIPE R TLCVSSQVGC+L C FC T Q RNL EI+ QV A ++G Sbjct: 55 DQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG 114 Query: 160 DFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITL 219 + G R I+N+VMMGMGEPL N NV ++ I D G SKRR+TL Sbjct: 115 ----AAKVTGQ------RPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTL 164 Query: 220 STSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279 STSG VP + ++G+ I V LAISLHA ++ +R+ +VPIN+KY +E + A R Y SNA Sbjct: 165 STSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNA 224 Query: 280 R--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTF 337 R+T EYVML +ND A L ++LK P KINLIP+NP+PG Y S I F Sbjct: 225 NQGRVTIEYVMLDHVNDGTEHAHQLAELLKETPCKINLIPWNPFPGAPYGRSSNSRIDRF 284 Query: 338 SECIKRSGYSSPIRTPRGLDILAACGQL 365 S+ + G+++ +R RG DI AACGQL Sbjct: 285 SKVLMSYGFTTIVRKTRGDDIDAACGQL 312 >gi|297568774|ref|YP_003690118.1| radical SAM enzyme, Cfr family [Desulfurivibrio alkaliphilus AHT2] gi|296924689|gb|ADH85499.1| radical SAM enzyme, Cfr family [Desulfurivibrio alkaliphilus AHT2] Length = 354 Score = 270 bits (689), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 153/337 (45%), Positives = 206/337 (61%), Gaps = 22/337 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH--FSIIYPEIVDEKISCDGTRKWLL 90 R QI+ WI+ DF M+DI++ VR LL + S + P+ V+ S DGT + Sbjct: 28 FRARQIFAWIHRPDFTDFSQMTDIAKHVRSLLAEKAFLSRLEPDKVES--SQDGT----V 81 Query: 91 RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150 +F R G + IE+V IPE R TLCVSSQVGC++ C FC T T RNL A EI+ Q Sbjct: 82 KFAFRLADGQL-IESVLIPEDDRYTLCVSSQVGCAMGCRFCLTATMGFKRNLEAAEIVGQ 140 Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRK--ISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 V A L PG + G K I+N+V MGMGEPL NFD++ +++ I + Sbjct: 141 VDAALRWLLARPG----------ATGEKTRINNLVFMGMGEPLLNFDHLLRAIKILMEQR 190 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 G FS RRIT+ST G VP + +GE++ V LA+SLHA ND+R+ L+PIN+KYPLE L+ Sbjct: 191 GHDFSGRRITVSTCGIVPKMKELGEQVPVNLAVSLHAADNDIRDQLMPINKKYPLEQLLR 250 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 ACR YP L RRI EYVM+K +NDS A L+K L GI KIN++P+N P Y Sbjct: 251 ACREYP-LPPRRRIMIEYVMIKDLNDSVAQARLLVKKLHGIRCKINILPYNENPDSPYQA 309 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 D++ + F + ++R+G+++ +R RG DI AACGQL Sbjct: 310 PDEETVENFRQILRRAGHTTLLRQSRGADISAACGQL 346 >gi|299530509|ref|ZP_07043929.1| radical SAM enzyme, Cfr family protein [Comamonas testosteroni S44] gi|298721485|gb|EFI62422.1| radical SAM enzyme, Cfr family protein [Comamonas testosteroni S44] Length = 369 Score = 269 bits (688), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 144/339 (42%), Positives = 196/339 (57%), Gaps = 20/339 (5%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R R +Q+++WI+ RG DF M+D+++ +R L I +V E +S DGT KWL Sbjct: 20 RFRATQLFRWIHQRGASDFDQMTDLAKSLREKLKSRAHITALPVVTEHVSADGTVKWLFD 79 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 +G +E+V+IPE RGTLCVSSQ GC++ C FC TG Q RNL EIL Q+ Sbjct: 80 -----VGDGNAVESVFIPEDDRGTLCVSSQAGCAVGCRFCSTGHQGFSRNLNTGEILAQL 134 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A L G ED R ISN+VMMGMGEPL N+ + +L + D G Sbjct: 135 WYAEHSLRKRFGTED----------RIISNVVMMGMGEPLQNYSALVPALRVMLDDHGYG 184 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S+RR+T+STSG VP + R+ ++ V LA+SLHA ++ LR+ LVP+N+KYP+ L+DAC Sbjct: 185 LSRRRVTVSTSGVVPMMDRLSQDCAVALAVSLHAPNDPLRDNLVPLNKKYPIAELLDACE 244 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP-----AKINLIPFNPWPGCEY 326 Y + ITFEY ML G+ND A LI++++ K NLIPFNP+P Sbjct: 245 RYLEFAPRDFITFEYCMLDGVNDQLEHARQLIELVRARGDGKSWCKFNLIPFNPFPASGL 304 Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L S + F+ + +G + +R RG DI AACGQL Sbjct: 305 LRSPSARVTEFATLLSNAGIVTTVRKTRGDDIDAACGQL 343 >gi|86158056|ref|YP_464841.1| hypothetical protein Adeh_1631 [Anaeromyxobacter dehalogenans 2CP-C] gi|123750314|sp|Q2IIC5|RLMN_ANADE RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|85774567|gb|ABC81404.1| 23S rRNA m(2)A-2503 methyltransferase [Anaeromyxobacter dehalogenans 2CP-C] Length = 372 Score = 269 bits (688), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 139/335 (41%), Positives = 202/335 (60%), Gaps = 15/335 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+++W+++RG + M+D+ + +R L + + E E+ S DGT KW R Sbjct: 31 FRARQVYRWLHLRGAASLEEMTDVPRALRERLAEGTRLTTLERATEQRSADGTIKWTWRT 90 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + +E+VY+PE R TLCVS+QVGC++ C+FC TGT L RNL EI+ QV Sbjct: 91 RDGKL-----VESVYLPETDRKTLCVSTQVGCAVGCTFCMTGTMGLARNLEPGEIVDQVH 145 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A L + E R ++N+V MGMGEPL N+ ++K +L + G +F Sbjct: 146 RANRRLIELGEGEGP---------RPLTNLVFMGMGEPLANYRSLKVALDLLLSEDGPNF 196 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S R +T+STSG VP + R+GEE V LA+SL+A ++ R+ ++PINR+YPL L+ ACR Sbjct: 197 SHRHVTVSTSGLVPVMRRLGEETQVKLAVSLNATTDAQRDAIMPINRRYPLAELLRACRE 256 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 +P + RRITFEYVML G+ND+P DA L ++L+GIPAK+NLIP+N PG + Sbjct: 257 FP-MKQGRRITFEYVMLGGVNDAPEDAERLARLLRGIPAKVNLIPYNENPGLGFAAPAPG 315 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 + F + + ++ +R RG DI AACGQL + Sbjct: 316 AVERFRDLLVARNVTAVVRKNRGTDIAAACGQLAA 350 >gi|89072699|ref|ZP_01159264.1| hypothetical protein SKA34_19254 [Photobacterium sp. SKA34] gi|89051519|gb|EAR56973.1| hypothetical protein SKA34_19254 [Photobacterium sp. SKA34] Length = 373 Score = 269 bits (687), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 146/336 (43%), Positives = 197/336 (58%), Gaps = 20/336 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI KWIY G DF M++I++++R L + I P + + + S DGT KW +R Sbjct: 29 FRADQIMKWIYHFGCDDFDQMTNINKKLREKLKRVAEIRAPHVSEAQYSTDGTIKWAMRV 88 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G ++ETVYIP++ R TLCVSSQVGC+L C FC T Q RNL EI+ QV Sbjct: 89 ------GDQDVETVYIPDEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A +G + GR+ I+NIVMMGMGEPL N N+ +L I D +G Sbjct: 143 RAAKEVG-----------IQKDTGRRPITNIVMMGMGEPLLNMKNLIPALEIMLDDLGFG 191 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 SKRR+T+STSG V + ++ + I V LAISLHA +++LR+ ++PIN ++ +E +D R Sbjct: 192 LSKRRVTVSTSGVVSGLEQMIDTIDVALAISLHAPTDELRSQIMPINDRWNIEAFLDVVR 251 Query: 272 HYPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 Y +NA R+T EYV+L +ND A L K+LK PAKINLIPFNP+PG Y Sbjct: 252 RYVNSTNANRGRVTVEYVLLDHVNDDMEHARQLAKVLKDTPAKINLIPFNPYPGSPYKKP 311 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F + + ++ +R RG DI AACGQL Sbjct: 312 SNSRIDRFMKTLMEYDFTVTVRKTRGDDIDAACGQL 347 >gi|121607087|ref|YP_994894.1| radical SAM protein [Verminephrobacter eiseniae EF01-2] gi|205829923|sp|A1WE19|RLMN_VEREI RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|121551727|gb|ABM55876.1| radical SAM enzyme, Cfr family [Verminephrobacter eiseniae EF01-2] Length = 391 Score = 269 bits (687), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 152/390 (38%), Positives = 222/390 (56%), Gaps = 32/390 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + +L+ R+ L + ++G R R +Q+++WI+ RG DF MSD+++ +R Sbjct: 1 MSTTNLLEFDRDGLADFCARLG----EKRFRATQLFRWIHQRGASDFDAMSDLARALRDK 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L + P ++ + S DG+ KWL +G +E V+IPE RGTLCVSSQ G Sbjct: 57 LKGCARVQAPPVISGQASADGSVKWLFD-----VGAGNAVEAVFIPEDERGTLCVSSQAG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C FC TG Q RNL++ EI+ Q+ A L ED R ISN+V Sbjct: 112 CAVGCRFCSTGHQGFSRNLSSGEIIAQLWFAEHALRRRLKTED----------RVISNLV 161 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N + +L + D G S+RR+T+STSG VP I R+ + V LA+SL Sbjct: 162 MMGMGEPLQNLAALLPALRVMLDDHGYGLSRRRVTVSTSGVVPMIDRLARDCPVALAVSL 221 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALN 301 HA ++ LR+ LVP+NRKYP++ L+ AC+ Y L++A R ITFEY ML G+ND A Sbjct: 222 HAPNDALRDQLVPLNRKYPIDELLQACKRY--LAHAPRDFITFEYCMLDGVNDQIGHARQ 279 Query: 302 LIKIL--KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L++++ I K NLIPFNP+P L S I+ F++ + +G + +R RG DI Sbjct: 280 LVELVGRAAIRCKFNLIPFNPFPASGLLRSAHDQILAFAQVLGAAGIVTTVRKTRGDDIA 339 Query: 360 AACGQLKS-------LSKRIPKVPRQEMQI 382 AACGQL +++R+ K ++Q+ Sbjct: 340 AACGQLAGDVRDRTRVAERMAKQRTMQLQL 369 >gi|293604539|ref|ZP_06686944.1| cfr family radical SAM enzyme [Achromobacter piechaudii ATCC 43553] gi|292817120|gb|EFF76196.1| cfr family radical SAM enzyme [Achromobacter piechaudii ATCC 43553] Length = 384 Score = 269 bits (687), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 143/333 (42%), Positives = 198/333 (59%), Gaps = 5/333 (1%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +W++ RG F M+D+++E R L + I + E+ S DGTRKWL Sbjct: 29 FRARQLQRWMHQRGADSFDAMTDLAREFRSQLASNCRIEALPVNIEQRSADGTRKWLFD- 87 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G IETV+IPE RGTLC+SSQ GC + C FC TG Q RNL EI+ Q+ Sbjct: 88 ----VGQGNAIETVFIPEDDRGTLCISSQAGCVVNCRFCSTGHQGFNRNLKTSEIIGQLW 143 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A+ +L G +E R ISN+VMMGMGEPL N+D V +L + D Sbjct: 144 WAKRVLEADIGTARLESAKATEDTRVISNVVMMGMGEPLLNYDQVLPALRLMLDDNAYGL 203 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+T+STSG VP + R+ ++ V LA+SLHA ++ LR+ LVP+N+KYPL+ L+ AC Sbjct: 204 SRRRVTVSTSGVVPMMDRLSQDCPVALAVSLHAPNDALRDELVPLNKKYPLKELLAACER 263 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + ITFEY ML GIND+ + A LI+I + + K+NLIPFNP+P S+ Sbjct: 264 YLAFAPRDFITFEYCMLDGINDTDQHAKELIQIARQLRCKLNLIPFNPFPESGLKRSNSA 323 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + F++ + +G + +R RG DI AACGQL Sbjct: 324 RVKVFAQRLMDAGIITTVRKTRGDDIDAACGQL 356 >gi|330446674|ref|ZP_08310326.1| 23S rRNA m2A2503 methyltransferase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490865|dbj|GAA04823.1| 23S rRNA m2A2503 methyltransferase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 373 Score = 269 bits (687), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 147/336 (43%), Positives = 197/336 (58%), Gaps = 20/336 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI KWIY G DF M++I++++R L + I P + + + S DGT KW +R Sbjct: 29 FRADQIMKWIYHFGCDDFDQMTNINKKLREKLKRVAEIRAPYVSEAQHSADGTIKWAMRV 88 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G ++ETVYIP++ R TLCVSSQVGC+L C FC T Q RNL EI+ QV Sbjct: 89 ------GDQDVETVYIPDEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A +G V GR+ I+N+VMMGMGEPL N N+ +L I D +G Sbjct: 143 RAAKEIG-----------VQKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFG 191 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 SKRR+T+STSG V + ++ I V LAISLHA +++LR+ ++PIN ++ +E +DA R Sbjct: 192 LSKRRVTVSTSGVVSGLEQMIGNIDVALAISLHAPTDELRSQIMPINNRWDIETFLDAVR 251 Query: 272 HYPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 Y +NA R+T EYV+L +ND A L K+LK PAKINLIPFNP+PG Y Sbjct: 252 RYVNSTNANRGRVTVEYVLLDHVNDDMEHARQLAKVLKDTPAKINLIPFNPYPGSPYKKP 311 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F + + ++ +R RG DI AACGQL Sbjct: 312 SNSRIDRFMKTLMEYDFTVTVRKTRGDDIDAACGQL 347 >gi|114332136|ref|YP_748358.1| radical SAM enzyme, Cfr family protein [Nitrosomonas eutropha C91] gi|122313183|sp|Q0AE39|RLMN_NITEC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|114309150|gb|ABI60393.1| 23S rRNA m(2)A-2503 methyltransferase [Nitrosomonas eutropha C91] Length = 379 Score = 268 bits (686), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 147/342 (42%), Positives = 205/342 (59%), Gaps = 10/342 (2%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93 R Q+ +W++ G +F MSD+++ R L + + PEI+ + + DGTRKWLL Sbjct: 25 RARQLLRWVHRFGKTEFIEMSDLAKTFRQKLMERAVVHPPEIISDHTAGDGTRKWLL--- 81 Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153 G +E V+IPE +RGTLCVSSQVGC+L CSFC TG Q RNL+ EI+ Q+ Sbjct: 82 --STGTGNAVEMVFIPEPNRGTLCVSSQVGCALACSFCSTGRQGFNRNLSVAEIIGQLWW 139 Query: 154 ARSLLGDFPG---CEDIEGMVIPSVG--RKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 A LL G D+ + + R ++N+VMMGMGEPL NF+NV +L + Sbjct: 140 ANRLLEGQVGELFSPDVAQIRADNTDTRRPVTNVVMMGMGEPLANFENVVTALDLMLSDD 199 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S+RR+T+STSG VP + R+ E V LA+SLHA ++ LR+ LVPIN+KYP+ L+ Sbjct: 200 AYGLSRRRVTVSTSGLVPALDRLRERCPVALAVSLHAPNDALRDQLVPINKKYPIRDLLA 259 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 AC Y + ITFEYVML+ +NDS A L+++++ IP K+NLIPFN + G Y Sbjct: 260 ACERYLPAAPRDFITFEYVMLRDVNDSIALARELVQVVRNIPCKLNLIPFNTFAGSGYER 319 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 S+ I F + + ++G + +R RG DI AACGQL K Sbjct: 320 SNTDAIDNFRDVLMQAGIVTTVRKTRGDDIAAACGQLAGQVK 361 >gi|152980879|ref|YP_001353820.1| hypothetical protein mma_2130 [Janthinobacterium sp. Marseille] gi|205829777|sp|A6SZX3|RLMN_JANMA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|151280956|gb|ABR89366.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 387 Score = 268 bits (686), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 139/335 (41%), Positives = 201/335 (60%), Gaps = 12/335 (3%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ G DF M+D+++ +R L I P ++ + S DGTRKWL+ Sbjct: 27 FRAKQLQRWIHQFGASDFDAMTDLAKSLRDKLATRAIIAAPAVISDHTSADGTRKWLVD- 85 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE++RGTLC+S+Q GC++ C FC TG Q RNL+ E++ Q+ Sbjct: 86 ----VGQGNAVETVFIPEENRGTLCISTQAGCAVNCRFCSTGKQGFNRNLSVGEVIGQLW 141 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 +A L G E P R+I+N+VMMGMGEPL N++ +L + D Sbjct: 142 MAEFELRRTKGIEPG-----PKGERQITNVVMMGMGEPLLNYEPTVTALKLMLDDNAYGL 196 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+TLSTSG VP I ++ ++ V LA+SLHA ++ LR+ LVP+N+KYPL L+ AC+ Sbjct: 197 SRRRVTLSTSGVVPMIDKLSQDCAVALAVSLHASNDALRDGLVPLNKKYPLVELMAACKR 256 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILK--GIPAKINLIPFNPWPGCEYLCSD 330 Y + +TFEY ML G+NDS + A LI +++ +P K NLIPFNP+P S Sbjct: 257 YLEFAPRDFVTFEYCMLDGVNDSDQHARELIALVRQADVPCKFNLIPFNPFPESGLTRSH 316 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F++ + +G + +R RG DI AACGQL Sbjct: 317 NPRIKAFAQVLMDAGIVTTVRKTRGDDIDAACGQL 351 >gi|171059552|ref|YP_001791901.1| radical SAM protein [Leptothrix cholodnii SP-6] gi|205829645|sp|B1XXL6|RLMN_LEPCP RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|170776997|gb|ACB35136.1| radical SAM enzyme, Cfr family [Leptothrix cholodnii SP-6] Length = 393 Score = 268 bits (686), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 151/347 (43%), Positives = 202/347 (58%), Gaps = 22/347 (6%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R R Q+++WI+ RG DF MSD+++ +R L I ++ E S DGT KWL Sbjct: 25 RFRAVQLFRWIHQRGAADFGQMSDLAKSLRSKLADVACIAPLRVLSEHRSSDGTIKWLFD 84 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 +G +ETVYIPE R TLC+SSQ GC++ C FC TG Q RNL+ EIL Q+ Sbjct: 85 -----VGDGNAVETVYIPEDDRATLCISSQAGCAVGCRFCSTGHQGFSRNLSTAEILAQL 139 Query: 152 LLARSLLGDFPGCEDIEGMVI-------PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIA 204 A L E EG+ + P+ R ISN+VMMGMGEPL N+ V +L + Sbjct: 140 WYAEHSLRR----ERAEGVSVGARAATGPASERIISNVVMMGMGEPLQNYAAVLPALRVM 195 Query: 205 SDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLE 264 D G S+RR+T+STSG VP I R+ ++ V LA+SLHA + LR++LVP+NRKYPL Sbjct: 196 LDDHGYGLSRRRVTVSTSGVVPMIDRLAADLPVALAVSLHACDDALRDVLVPLNRKYPLA 255 Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--KG----IPAKINLIPF 318 L+ AC+ Y + ITFEY ML G+NDS A L+K++ KG +P K NLIPF Sbjct: 256 ELLGACQAYLASAPRDFITFEYCMLDGVNDSDEQARALLKLVGDKGPVGRLPCKFNLIPF 315 Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 NP+P S + + F++ + G + +R RG DI AACGQL Sbjct: 316 NPFPESGLKRSGNERVQAFAQVLIDGGLVTTVRKTRGDDIDAACGQL 362 >gi|163856328|ref|YP_001630626.1| hypothetical protein Bpet2017 [Bordetella petrii DSM 12804] gi|205829671|sp|A9IK57|RLMN_BORPD RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|163260056|emb|CAP42357.1| conserved hypothetical protein [Bordetella petrii] Length = 381 Score = 268 bits (686), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 143/333 (42%), Positives = 198/333 (59%), Gaps = 6/333 (1%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ RG F M+D++++ R L Q I + E+ S DGTRKWL Sbjct: 29 FRARQLQRWIHQRGADSFDAMTDLARDFRGQLAQQCRIQALPVNTEQRSSDGTRKWLFD- 87 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G IETV+IPE RGTLCVSSQ GC++ C FC TG Q RNLT+ EI+ Q+ Sbjct: 88 ----VGQGNAIETVFIPEDDRGTLCVSSQAGCAVNCRFCSTGHQGFNRNLTSSEIIGQLW 143 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A+ +L G + G R +SN+VMMGMGEPL N+D + +L + D Sbjct: 144 WAKRVLEADAGTARLGGAGNDDT-RVVSNVVMMGMGEPLLNYDQLLPALRLMLDDNAYGL 202 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+T+STSG VP + R+ + V LA+SLHA ++ LR+ LVP+N+KYPL L+ AC Sbjct: 203 SRRRVTVSTSGVVPMMDRLSRDCPVALAVSLHAPTDALRDELVPLNKKYPLAELLAACER 262 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + ITFEY ML GIND+ + A LI++ + + K+NLIPFNP+P S Sbjct: 263 YLASAPRDFITFEYCMLDGINDTDQHARALIQVARQVRCKLNLIPFNPFPASGLKRSPSA 322 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + F++ + +G + +R RG DI AACGQL Sbjct: 323 RVKVFAQRLMDAGIVTTVRKTRGDDIDAACGQL 355 >gi|91788473|ref|YP_549425.1| hypothetical protein Bpro_2611 [Polaromonas sp. JS666] gi|123164823|sp|Q12AB5|RLMN_POLSJ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|91697698|gb|ABE44527.1| 23S rRNA m(2)A-2503 methyltransferase [Polaromonas sp. JS666] Length = 382 Score = 268 bits (685), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 141/339 (41%), Positives = 196/339 (57%), Gaps = 20/339 (5%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R R +Q+++WI+ +G DF M+D+++ +R L I P++V S DGT KWL Sbjct: 24 RFRATQLFRWIHQKGASDFGQMTDLARSLREKLAGSAHIQGPKVVSRHDSADGTIKWLFD 83 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 +G IE V+IPE RGTLC+SSQ GC++ C FC TG Q RNLT EI+ Q+ Sbjct: 84 -----VGAGDVIEAVFIPETDRGTLCISSQAGCAVGCRFCSTGHQGFSRNLTTGEIVSQL 138 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A L G ++ R ISN+VMMGMGEPL N+ + +L + D G Sbjct: 139 WFAEHFLRQHLGRQE----------RVISNVVMMGMGEPLQNYSQLVPALRVMLDDHGYG 188 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S+RR+T+STSG VP I R+ ++ V LA+SLHA + LR+ LVP+N+KYP+ L+ AC Sbjct: 189 LSRRRVTVSTSGVVPMIDRLAKDCPVALAVSLHAPQDALRDSLVPLNKKYPIAELLQACT 248 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK-----GIPAKINLIPFNPWPGCEY 326 Y + ITFEY ML G+ND P A L+ +++ G+ K NLIPFNP+P Sbjct: 249 RYQASAPRDFITFEYCMLDGVNDQPEHARQLVALMQNHSAGGLSCKFNLIPFNPFPASGL 308 Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 S + F++ + +G + +R RG DI AACGQL Sbjct: 309 KRSAMPQVAAFAKILMDAGIVTTVRKTRGDDIDAACGQL 347 >gi|262274790|ref|ZP_06052601.1| ribosomal RNA large subunit methyltransferase N [Grimontia hollisae CIP 101886] gi|262221353|gb|EEY72667.1| ribosomal RNA large subunit methyltransferase N [Grimontia hollisae CIP 101886] Length = 373 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 147/336 (43%), Positives = 197/336 (58%), Gaps = 20/336 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI KW+Y G+ DF MS+I++ +R L I PE+ + S DGT KW +R Sbjct: 29 FRADQIMKWMYHFGVDDFDQMSNINKVLREKLKARCEIRAPEVSAAQYSADGTIKWAMRV 88 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G ++ETVYIPE R TLCVSSQVGC+L C FC T Q RNL EI+ QV Sbjct: 89 ------GNQDVETVYIPEDDRATLCVSSQVGCALDCKFCSTAQQGFNRNLKVSEIIGQVW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A +G V GR+ I+N+VMMGMGEPL N N+ +L++ D +G Sbjct: 143 RAAKEIG-----------VEKETGRRPITNVVMMGMGEPLLNMKNLIPALNLMLDDLGYG 191 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 SKRR+T+STSG V + ++ +I V LAISLHA +++LR+ ++PIN +Y +E + + R Sbjct: 192 LSKRRVTVSTSGVVSGLEQMIGKIDVALAISLHAPNDELRSQIMPINDRYDIETFLASVR 251 Query: 272 HYPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 Y SNA R+T EY++L +ND A L ++LK PAKINLIPFNP+PG Y Sbjct: 252 RYIASSNANRGRVTVEYILLDHVNDDMEHARQLAELLKDTPAKINLIPFNPYPGSPYKKP 311 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F + + + Y+ +R RG DI AACGQL Sbjct: 312 SNSRIDRFQKTLMQYDYTVIVRKTRGDDIDAACGQL 347 >gi|118602407|ref|YP_903622.1| radical SAM protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|205829871|sp|A1AW44|RLMN_RUTMC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|118567346|gb|ABL02151.1| 23S rRNA m(2)A-2503 methyltransferase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 356 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 151/363 (41%), Positives = 204/363 (56%), Gaps = 24/363 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K++L+ + L + + +G RT QI +WIY DF+ M + S+ +R Sbjct: 1 MNKKNLLSFNQNALNDFFVGLGEKP----YRTKQIMQWIYKDHEFDFEKMLNFSKSLRDE 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L++ + +V + DG KW+L + IE +YIPEK+RGTLC+SSQVG Sbjct: 57 LSKVVCVELLRVVKQNFILDGVIKWVL-----ALDKNNHIEMIYIPEKNRGTLCISSQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C L C+FC TG Q +NLT EI+ QVL+A L S ++ISN+V Sbjct: 112 CGLACTFCSTGMQGFNKNLTTAEIIAQVLIASRYLN--------------SKTKRISNVV 157 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MGMGEPL N V + + D + S+R++T+STSG VP + R+ E V LA+SL Sbjct: 158 FMGMGEPLLNEHAVYNACDLLLDDLAFGLSRRKVTISTSGVVPAMLRMSERTPVSLAVSL 217 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNL 302 HA + LRN LVPIN+KY LE L+ AC+ Y + R I FEYVMLKG+NDS A L Sbjct: 218 HASDDHLRNELVPINQKYSLEELLKACKVYLQAGTQKRHILFEYVMLKGVNDSIEHANKL 277 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +K+LKGI AKINLIPFN + +Y S + I F + G + R RG DI AC Sbjct: 278 VKLLKGISAKINLIPFNSFEKTQYQTSSAQTIEKFQNILYHQGIRTMTRRTRGEDIGGAC 337 Query: 363 GQL 365 GQL Sbjct: 338 GQL 340 >gi|332527850|ref|ZP_08403887.1| hypothetical protein RBXJA2T_17901 [Rubrivivax benzoatilyticus JA2] gi|332112427|gb|EGJ12220.1| hypothetical protein RBXJA2T_17901 [Rubrivivax benzoatilyticus JA2] Length = 372 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 145/336 (43%), Positives = 198/336 (58%), Gaps = 19/336 (5%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R R Q+++WI+ +G DF MSD+++ +R L + ++ E +S DGT KWL Sbjct: 24 RFRAVQLFRWIHQKGESDFDKMSDLAKSLRGKLAGAAVVESLPVISEHVSADGTTKWLFD 83 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 +GG +ETVYIPE RGTLCVSSQ GC++ C FC TG Q RNL+ EI+ Q+ Sbjct: 84 -----VGGGNAVETVYIPEDDRGTLCVSSQAGCAVGCRFCSTGHQGFSRNLSTGEIIAQL 138 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A L P R I N+VMMGMGEPL N+ V +L + D G Sbjct: 139 RYAEHRLRG------------PDGQRVIDNVVMMGMGEPLQNYAAVVPALRVMLDDHGYG 186 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S+RR+T+STSG V I R+ E+ V LA+SLHA + LR++LVPINRK +E L+DAC Sbjct: 187 LSRRRVTVSTSGMVAMIDRLREDCPVALAVSLHAPDDALRDMLVPINRKDGIEALLDACL 246 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPWPGCEYLCS 329 Y + ITFEY ML G+ND+P A L+ ++ + +P K NLIPFNP+P S Sbjct: 247 RYVEAAPRDFITFEYCMLDGVNDAPEQAQQLVHLVRRRRVPCKFNLIPFNPFPESGLKRS 306 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 ++ + F++ ++ +G + IR RG DI AACGQL Sbjct: 307 PRERVTAFAKVLQDAGIVTTIRKVRGDDIDAACGQL 342 >gi|71892305|ref|YP_278039.1| putative pyruvate formate lyase activating enzyme 2 [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|123761466|sp|Q492D9|RLMN_BLOPB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|71796411|gb|AAZ41162.1| putative pyruvate formate lyase activating enzyme 2 [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 373 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 161/365 (44%), Positives = 210/365 (57%), Gaps = 18/365 (4%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 + KK +L+ M +EEL K+G R+ QI +WIY DF M++IS+ ++ Sbjct: 10 YAKKVNLLNMNKEELLIFFDKLG----EKPFRSHQIMRWIYHYYCDDFNYMTNISKSLKE 65 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L Q I P I+ E++S DGT KW ++ + +IETVYIPE R TLCVSSQ+ Sbjct: 66 RLKQIAEIRAPIIIKEQLSSDGTIKWAMKIDEQ------QIETVYIPENKRTTLCVSSQI 119 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L CSFC T Q RNL EI+ QV A L+ + I+ P I+NI Sbjct: 120 GCPLGCSFCGTAQQGFNRNLNVSEIIGQVWRAAQLI-NLNKKIKIKNNRFP-----ITNI 173 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 V MGMGEPL N NV ++ I D G SKR ITLST+G VP I ++ I + LAIS Sbjct: 174 VFMGMGEPLLNIVNVVSAIRIILDDFGFKLSKRHITLSTAGIVPGIEKLKNMIDIPLAIS 233 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYP--GLSNARRITFEYVMLKGINDSPRDAL 300 LHA ++ +RN ++PIN+KY + +++A R Y SN RIT EYV+LK IND A Sbjct: 234 LHAPNDIIRNKIMPINKKYNINSVLEAARRYSMDTKSNHGRITIEYVLLKNINDDVLHAH 293 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L K L+GIP KINLIP+NP P Y CS Q + F + + + + IR RG DI A Sbjct: 294 QLAKQLQGIPCKINLIPWNPIPNIRYACSSQIRMRAFLKVLLKYNIVTIIRKIRGADINA 353 Query: 361 ACGQL 365 ACGQL Sbjct: 354 ACGQL 358 >gi|317403336|gb|EFV83849.1| ribosomal RNA large subunit methyltransferase N [Achromobacter xylosoxidans C54] Length = 384 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 143/333 (42%), Positives = 195/333 (58%), Gaps = 5/333 (1%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +W++ RG F M+D++++ R L I + E+ S DGTRKWL Sbjct: 29 FRARQLQRWMHQRGADSFDAMTDLARDFRGQLASRCVIEALAVNTEQRSSDGTRKWLFD- 87 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G IETV+IPE RGTLC+SSQ GC + C FC TG Q RNL EI+ Q+ Sbjct: 88 ----VGQGNAIETVFIPEDDRGTLCISSQAGCVVNCRFCSTGHQGFNRNLKTSEIIGQLW 143 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A+ +L G +E R ISN+VMMGMGEPL N+D V +L + D Sbjct: 144 WAKRVLEADIGTARLESARATDDTRVISNVVMMGMGEPLLNYDQVLPALRLMLDDNAYGL 203 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+T+STSG VP + R+ ++ V LA+SLHA ++ LR+ LVP+N+KYPL+ L+ AC Sbjct: 204 SRRRVTVSTSGVVPMMDRLSQDCPVALAVSLHAPNDALRDELVPLNKKYPLKELLAACER 263 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + ITFEY ML GIND+ + A LI I + I K+NLIPFNP+P S Sbjct: 264 YLAFAPRDFITFEYCMLDGINDTDQHARELIHIARQIRCKLNLIPFNPFPASGLKRSPSA 323 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + F++ + +G + +R RG DI AACGQL Sbjct: 324 RVKVFAQRLMDAGIITTVRKTRGDDIDAACGQL 356 >gi|206890968|ref|YP_002247985.1| radical SAM enzyme, Cfr family [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742906|gb|ACI21963.1| radical SAM enzyme, Cfr family [Thermodesulfovibrio yellowstonii DSM 11347] Length = 342 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 157/364 (43%), Positives = 217/364 (59%), Gaps = 27/364 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K++L + +++E+ +L +P R+ QI +WIY + + +++ S+ +R + Sbjct: 3 KQNLKELTTKQIEKIILDESLPL----YRSKQIVQWIYKKFVDSINDITEWSKSLRERFS 58 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + I + D++IS DGT K+L + +IE+V I +K R TLCVSSQVGC Sbjct: 59 EKYYIGRINLFDKRISIDGTIKFLWE-----LEDGEKIESVLISDKDRLTLCVSSQVGCM 113 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC TG L RNL A EI+ Q + +I RKI+NIV M Sbjct: 114 LKCKFCLTGKIGLKRNLKAWEIVDQYIQV--------------SKIIQKENRKITNIVFM 159 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244 GMGEPL NF+NV ++L D + FS RITLST+G +P I + + + LAISL+ Sbjct: 160 GMGEPLLNFENVVEALWRLKDL--ILFSPSRITLSTAGIIPAIKELPYKAPAIKLAISLN 217 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A N R+ L+PIN+KYPL LI R YP L RITFEY+++KGIN S +DA L + Sbjct: 218 ATDNKTRSYLMPINKKYPLHELIKTLRDYP-LKPRHRITFEYILIKGINCSEKDAYRLSE 276 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGIP+KINLIPFNPW GCE+ + +I+ F E + GYS IR +G DILAACGQ Sbjct: 277 LLKGIPSKINLIPFNPWEGCEFERPEDNEILNFQEILAARGYSVFIRKSKGTDILAACGQ 336 Query: 365 LKSL 368 LK+L Sbjct: 337 LKAL 340 >gi|333001958|gb|EGK21524.1| hypothetical protein SFK218_3513 [Shigella flexneri K-218] Length = 336 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 150/336 (44%), Positives = 200/336 (59%), Gaps = 19/336 (5%) Query: 49 DFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYI 108 +F M+DI++ +R L + I PE+V+E+ S DGT KW + G +ETVYI Sbjct: 8 NFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYI 61 Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168 PE R TLCVSSQVGC+L C FC T Q RNL EI+ QV A ++G + Sbjct: 62 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVT 117 Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228 G R I+N+VMMGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + Sbjct: 118 GQ------RPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPAL 171 Query: 229 ARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEY 286 ++G+ I V LAISLHA ++++R+ +VPIN+KY +E + A R Y SNA R+T EY Sbjct: 172 DKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEY 231 Query: 287 VMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGY 346 VML +ND A L ++LK P KINLIP+NP+P Y S I FS+ + G+ Sbjct: 232 VMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFPDAPYGRSSNSRIDRFSKVLMSYGF 291 Query: 347 SSPIRTPRGLDILAACGQLK-SLSKRIPKVPRQEMQ 381 ++ +R RG DI AACGQL + R + R+ MQ Sbjct: 292 TTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKRMQ 327 >gi|256830852|ref|YP_003159580.1| Cfr family radical SAM protein [Desulfomicrobium baculatum DSM 4028] gi|256580028|gb|ACU91164.1| radical SAM enzyme, Cfr family [Desulfomicrobium baculatum DSM 4028] Length = 360 Score = 267 bits (682), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 139/355 (39%), Positives = 214/355 (60%), Gaps = 22/355 (6%) Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75 ELEEA+ +G H R Q+W+W++ +G+R+F M++++++ R L + +++ +PE+ Sbjct: 11 ELEEAVQAMG----HQSFRARQLWQWLWRKGVREFSAMTNLARDFREQLMREWALDWPEV 66 Query: 76 VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135 + + S DGT K LLR + +ETV IP+K R T C+S Q+GC + C+FC TG Sbjct: 67 HEVQTSSDGTVKLLLRLADGAL-----VETVLIPDKERYTQCLSCQIGCPMGCTFCSTGL 121 Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195 RN+T EI QVL+AR L +G ++ N+V MGMGEPL N+D Sbjct: 122 MGFSRNMTGGEIAAQVLVARDYLRAH------------GLGDEVKNLVYMGMGEPLTNWD 169 Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILV 255 V++SL I S++ GL FS+RRITLST + G E + AISLHA + ++R L+ Sbjct: 170 EVRRSLQILSNAEGLEFSRRRITLSTCAIKGKMDVFGIEGLALPAISLHAPTQEIRESLM 229 Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINL 315 P ++P+E LI A + L R+T EY+++KG+NDS + A L+++L + KINL Sbjct: 230 PGAARWPIEELIAALQGME-LKARERVTIEYILIKGVNDSLQHARQLVRLLSHLKCKINL 288 Query: 316 IPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 I +NP PG EY D++ F E +++ G++ +R +G DI AACGQLK+ ++ Sbjct: 289 IAYNPGPGIEYAAPAPGDVLAFEELLRKKGFTVTLRKSKGQDIAAACGQLKTEAQ 343 >gi|33602154|ref|NP_889714.1| hypothetical protein BB3178 [Bordetella bronchiseptica RB50] gi|81579923|sp|Q7WHM8|RLMN_BORBR RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|33576592|emb|CAE33670.1| conserved hypothetical protein [Bordetella bronchiseptica RB50] Length = 382 Score = 267 bits (682), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 148/365 (40%), Positives = 210/365 (57%), Gaps = 9/365 (2%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +++ +L+G+ L E + + G R Q+ +W++ RG F M+D++++ Sbjct: 1 MESVERVNLLGLDGAALSELVGQWGGKP----FRARQLQRWVHQRGADSFDAMTDLARDF 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L + I + E+ S DGTRKWL +G IETV+IPE RGTLC+SS Sbjct: 57 RAQLARDCVIEALPVNTEQRSSDGTRKWLFD-----VGQGNAIETVFIPEDDRGTLCISS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC + C FC TG Q RNL A EI+ Q+ A+ +L + G R IS Sbjct: 112 QAGCVVNCRFCSTGHQGFNRNLRASEIIGQLWWAKRVLEAAADTARLPGGKAGEDTRVIS 171 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+D V +L + D S+RR+T+STSG VP + R+ ++ V LA Sbjct: 172 NVVMMGMGEPLLNYDQVLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPVALA 231 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++ LR+ LVP+NRKYPL L+ AC Y + ITFEY ML GIND+ + A Sbjct: 232 VSLHAPNDALRDELVPLNRKYPLNALLAACERYLAHAPRDFITFEYCMLDGINDTDQHAR 291 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 LI++ + + K+NLIPFNP+P S + F++ + +G + +R RG DI A Sbjct: 292 ELIQLARQVRCKLNLIPFNPFPASGLKRSPSARVRVFAQRLMDAGIVTTVRKTRGDDIDA 351 Query: 361 ACGQL 365 ACGQL Sbjct: 352 ACGQL 356 >gi|148263644|ref|YP_001230350.1| ribosomal RNA large subunit methyltransferase N [Geobacter uraniireducens Rf4] gi|205829769|sp|A5GEC2|RLMN_GEOUR RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|146397144|gb|ABQ25777.1| 23S rRNA m(2)A-2503 methyltransferase [Geobacter uraniireducens Rf4] Length = 343 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 142/341 (41%), Positives = 205/341 (60%), Gaps = 29/341 (8%) Query: 28 QRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRK 87 Q R R QI+KW+Y + R+F M+++S++ R L + I + + S DGT+K Sbjct: 21 QGKERFRAKQIFKWLYQQDAREFADMTNLSKDFRQELEKTAWISNLDAEAVEASADGTKK 80 Query: 88 WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147 +L R + +E+V IP++ R TLC+SSQVGC++ C FC TGT KL RNLT EI Sbjct: 81 YLFR-----LADGNAVESVLIPDEDRTTLCISSQVGCAMGCEFCLTGTFKLTRNLTTAEI 135 Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRK--ISNIVMMGMGEPLCNFDNVKKSLSIAS 205 + QV +V R+ + NIV MGMGEPL N NV +L I + Sbjct: 136 VNQVC---------------------AVKRQEPVRNIVFMGMGEPLANLKNVVGALKILT 174 Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEM 265 D G FS R++T+STSG VP +A +G + V LA+SL+A ++++R+ ++PINR+YPL+ Sbjct: 175 DPDGFQFSTRKVTVSTSGLVPEMAELGASVTVNLAVSLNATTDEVRDRIMPINRRYPLKE 234 Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE 325 L+ AC+ +P L + R IT EYVM++G+NDS DA L++++ IP+K+NLIPFN GC Sbjct: 235 LLAACKAFP-LPSRRWITIEYVMIRGVNDSLDDAKRLVRLISNIPSKVNLIPFNEHDGCT 293 Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + Q I F + + + R+ RG DI AACGQLK Sbjct: 294 FQAPTQDSIDKFHKFLLDKHVTVITRSSRGSDISAACGQLK 334 >gi|90579368|ref|ZP_01235178.1| hypothetical protein VAS14_06663 [Vibrio angustum S14] gi|90440201|gb|EAS65382.1| hypothetical protein VAS14_06663 [Vibrio angustum S14] Length = 373 Score = 266 bits (681), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 147/336 (43%), Positives = 196/336 (58%), Gaps = 20/336 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI KWIY G DF M++I++++R L + I P + + + S DGT KW +R Sbjct: 29 FRADQIMKWIYHFGCDDFDQMTNINKKLREKLKRVAEIRAPYVSEAQHSTDGTIKWAMRV 88 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G ++ETVYIP++ R TLCVSSQVGC+L C FC T Q RNL EI+ QV Sbjct: 89 ------GDQDVETVYIPDEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A +G V GR+ I+NIVMMGMGEPL N N+ +L I D +G Sbjct: 143 RAAKEIG-----------VQKETGRRPITNIVMMGMGEPLLNMKNLIPALEIMLDDLGFG 191 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 SKRR+T+STSG V + ++ I V LAISLHA +++LR+ ++PIN ++ +E +D R Sbjct: 192 LSKRRVTVSTSGVVSGLEQMIGNIDVALAISLHAPTDELRSQIMPINDRWNIEAFLDVVR 251 Query: 272 HYPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 Y +NA R+T EYV+L +ND A L K+LK PAKINLIPFNP+PG Y Sbjct: 252 RYVNSTNANRGRVTVEYVLLDHVNDDMEHARQLAKVLKDTPAKINLIPFNPYPGSPYKKP 311 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F + + ++ +R RG DI AACGQL Sbjct: 312 SNSRIDRFMKTLMEYDFTVTVRKTRGDDIDAACGQL 347 >gi|31789377|gb|AAP58494.1| conserved hypothetical protein [uncultured Acidobacteria bacterium] Length = 413 Score = 266 bits (681), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 155/371 (41%), Positives = 217/371 (58%), Gaps = 39/371 (10%) Query: 14 REELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYP 73 R ELE L ++G P+ H R QI++W+Y RGI DF MSD+ +++R L + I P Sbjct: 56 RHELEHTLERLGHPRFHAR----QIFQWVYKRGITDFALMSDLGRDLRAQLAESCVITTP 111 Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----------RGTLCVSSQV 122 + ++ S DGT K+LLR + IE+V+IP+++ R T CVS+QV Sbjct: 112 VVERQERSQDGTVKFLLR-----LADGRHIESVFIPDETPAGPDGSPRAARITFCVSTQV 166 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQV-LLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC++ C+FC TG + R+LTA EI QV +LAR L G + N Sbjct: 167 GCAMKCAFCLTGKMGIDRSLTAGEIAGQVRVLAREL-----------GFLETRF-----N 210 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240 IV+MGMGEPL N++ K+L + +D G + S RR+TLST G +P + R+ E + LA Sbjct: 211 IVLMGMGEPLHNYEETMKALRVLADEHGFAMSARRMTLSTVGVLPALERLATEPLMPNLA 270 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ISLHA + D R++LVPINRKY L+ L+DACR +P L RITFEYV+L+ +ND+P DA Sbjct: 271 ISLHATTEDQRDLLVPINRKYGLKELLDACRRFP-LKRRERITFEYVLLREVNDTPEDAR 329 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L+K+L GI K+NL+P N G + + +F+ + G +R RG DI A Sbjct: 330 RLVKLLHGIKGKVNLLPLNEAAGIPFERPSDDRVNSFARILADHGIPVSVRKSRGRDIRA 389 Query: 361 ACGQLKSLSKR 371 ACGQL + S R Sbjct: 390 ACGQLITESDR 400 >gi|260773387|ref|ZP_05882303.1| ribosomal RNA large subunit methyltransferase N [Vibrio metschnikovii CIP 69.14] gi|260612526|gb|EEX37729.1| ribosomal RNA large subunit methyltransferase N [Vibrio metschnikovii CIP 69.14] Length = 373 Score = 266 bits (681), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 145/336 (43%), Positives = 197/336 (58%), Gaps = 20/336 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI KWIY G DF+ M++I++ +R L H I P + D + S DGT KW +R Sbjct: 29 FRADQIMKWIYHFGCDDFEKMTNINKNLREKLQTHCEIRAPYVSDAQYSSDGTIKWAMRV 88 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G ++ETVYIPE+ R TLCVSSQVGC+L C FC T Q RNL EI+ QV Sbjct: 89 ------GDQDVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A +G + GR+ I+N+VMMGMGEPL N N+ +L + D +G Sbjct: 143 RAAREIG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLIPALELMLDDLGFG 191 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 SKRR+T+STSG V + ++ +I V LAISLHA ++ LR+ ++PIN ++ ++ + + R Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTGQIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASVR 251 Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 Y SNA R +T EYV+L +ND A L +++KG P KINLIPFNP+PG Y Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAQLMKGTPCKINLIPFNPYPGSPYKKP 311 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F + + + ++ IR RG DI AACGQL Sbjct: 312 SNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQL 347 >gi|239815175|ref|YP_002944085.1| radical SAM enzyme, Cfr family [Variovorax paradoxus S110] gi|239801752|gb|ACS18819.1| radical SAM enzyme, Cfr family [Variovorax paradoxus S110] Length = 382 Score = 266 bits (680), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 142/338 (42%), Positives = 201/338 (59%), Gaps = 21/338 (6%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R R +Q+++WI+ RG DF M+D+++ +R L + ++ + S DGT KWL Sbjct: 25 RFRATQLFRWIHQRGASDFAQMTDLAKSLREKLATTARVEALPVITQHESKDGTIKWLFD 84 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 +G +E V+IPE RGTLCVSSQ GC++ C FC TG Q RNL+ EI+ Q+ Sbjct: 85 -----VGDGNAVEAVFIPEDDRGTLCVSSQAGCAVGCRFCSTGHQGFSRNLSTGEIVAQL 139 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A L + R ISN+VMMGMGEPL N+ + +L D Sbjct: 140 WFAEHFLRKH----------LKRDERVISNVVMMGMGEPLQNYTALVPALRTMLDDNAYG 189 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S+RR+T+STSG VP I R+G + V +A+SLHA ++ LR+ LVP+NRKYP+ L++AC+ Sbjct: 190 LSRRRVTVSTSGVVPMIDRLGADCPVAMAVSLHAPNDALRDDLVPLNRKYPIAELLEACK 249 Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILK--GIPAKINLIPFNPWPGCEYL 327 Y L +A R ITFEY ML G+ND P A L+++++ G+ K NLIPFNP+P L Sbjct: 250 RY--LVHAPRDFITFEYCMLDGVNDQPEHARQLVELVRTHGVSCKFNLIPFNPFPASGLL 307 Query: 328 CSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 S Q ++ F++ + +G + +R RG DI AACGQL Sbjct: 308 RSPQPRVLAFAKALSEAGLVTTVRKTRGDDIDAACGQL 345 >gi|124267188|ref|YP_001021192.1| hypothetical protein Mpe_A1999 [Methylibium petroleiphilum PM1] gi|205829632|sp|A2SHB8|RLMN_METPP RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|124259963|gb|ABM94957.1| conserved hypothetical protein [Methylibium petroleiphilum PM1] Length = 394 Score = 266 bits (679), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 144/340 (42%), Positives = 202/340 (59%), Gaps = 21/340 (6%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R R +Q+++WI+ +G DF MSD+++ +R L + ++ E +S DGT KWL Sbjct: 25 RFRATQLFRWIHQKGQSDFAQMSDLAKSLREKLAGRAVVRPLAVLSEHVSADGTVKWLFD 84 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 +GG +ETV+IPE RGTLC+SSQ GC++ C FC TG Q RNL+ EI+ Q+ Sbjct: 85 -----VGGGNAVETVFIPENDRGTLCISSQAGCAVGCRFCSTGHQGFSRNLSTGEIVAQL 139 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A L G + R ISN+VMMGMGEPL N+ + +L + D G Sbjct: 140 WHAEHQLRARLGTTE----------RVISNVVMMGMGEPLQNYAALLPALRVMLDDHGYG 189 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S+RR+T+STSG VP I R+ E+ V LA+SLHA ++ LR+ LVP+NRKYP+ L++AC+ Sbjct: 190 LSRRRVTVSTSGVVPMIDRLREDCPVALAVSLHAPTDALRDDLVPLNRKYPIAELLEACQ 249 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--KG----IPAKINLIPFNPWPGCE 325 Y + ITFEY ML G+NDS A L++++ +G +P KINLIPFNP+P Sbjct: 250 RYLEAAPRDFITFEYCMLDGVNDSEAQARELLRLVGERGPVGRVPCKINLIPFNPFPASG 309 Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 S + F++ + G + +R RG DI AACGQL Sbjct: 310 LTRSSVARVQAFAQLLVDGGLVTTVRRTRGDDIDAACGQL 349 >gi|33593205|ref|NP_880849.1| hypothetical protein BP2201 [Bordetella pertussis Tohama I] gi|81578506|sp|Q7VWK8|RLMN_BORPE RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|33563580|emb|CAE42479.1| conserved hypothetical protein [Bordetella pertussis Tohama I] gi|332382616|gb|AEE67463.1| hypothetical protein BPTD_2167 [Bordetella pertussis CS] Length = 382 Score = 266 bits (679), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 147/365 (40%), Positives = 210/365 (57%), Gaps = 9/365 (2%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +++ +L+G+ L E + + G R Q+ +W++ RG F M+D++++ Sbjct: 1 MEAVERVNLLGLDGAALSELVGQWGGKP----FRARQLQRWVHQRGADSFDAMTDLARDF 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L + I + E+ S DGTRKWL +G IETV+IPE RGTLC+SS Sbjct: 57 RAQLARDCVIEALPVNTEQRSSDGTRKWLFD-----VGQGNAIETVFIPEDDRGTLCISS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC + C FC TG Q RNL A EI+ Q+ A+ +L + G R IS Sbjct: 112 QAGCVVNCRFCSTGHQGFNRNLRASEIIGQLWWAKRVLEAAADTARLPGGKAGEDTRVIS 171 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+D V +L + D S+RR+T+STSG VP + R+ ++ V LA Sbjct: 172 NVVMMGMGEPLLNYDQVLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPVALA 231 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++ LR+ LVP+N+KYPL L+ AC Y + ITFEY ML GIND+ + A Sbjct: 232 VSLHAPNDALRDELVPLNKKYPLNALLAACERYLAHAPRDFITFEYCMLDGINDTDQHAR 291 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 LI++ + + K+NLIPFNP+P S + F++ + +G + +R RG DI A Sbjct: 292 ELIQLARQVRCKLNLIPFNPFPASGLKRSPSARVRVFAQRLMDAGIVTTVRKTRGDDIDA 351 Query: 361 ACGQL 365 ACGQL Sbjct: 352 ACGQL 356 >gi|33597413|ref|NP_885056.1| hypothetical protein BPP2857 [Bordetella parapertussis 12822] gi|81579190|sp|Q7W6P5|RLMN_BORPA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|33573840|emb|CAE38149.1| conserved hypothetical protein [Bordetella parapertussis] Length = 382 Score = 266 bits (679), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 147/365 (40%), Positives = 210/365 (57%), Gaps = 9/365 (2%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +++ +L+G+ L E + + G R Q+ +W++ RG F M+D++++ Sbjct: 1 MESVERVNLLGLDGAALSELVGQWGGKP----FRARQLQRWVHQRGADSFDAMTDLARDF 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L + I + E+ S DGTRKWL +G IETV+IPE RGTLC+SS Sbjct: 57 RAQLARDCVIEALPVNTEQRSSDGTRKWLFD-----VGQGNAIETVFIPEDDRGTLCISS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC + C FC TG Q RNL A EI+ Q+ A+ +L + G R IS Sbjct: 112 QAGCVVNCRFCSTGHQGFNRNLRASEIIGQLWWAKRVLEAAADTARLPGGKAGEDTRVIS 171 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+D V +L + D S+RR+T+STSG VP + R+ ++ + LA Sbjct: 172 NVVMMGMGEPLLNYDQVLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPLALA 231 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++ LR+ LVP+NRKYPL L+ AC Y + ITFEY ML GIND+ + A Sbjct: 232 VSLHAPNDALRDELVPLNRKYPLNALLAACERYLAHAPRDFITFEYCMLDGINDTDQHAR 291 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 LI++ + + K+NLIPFNP+P S + F++ + +G + +R RG DI A Sbjct: 292 ELIQLARQVRCKLNLIPFNPFPASGLKRSPSARVRVFAQRLMDAGIVTTVRKTRGDDIDA 351 Query: 361 ACGQL 365 ACGQL Sbjct: 352 ACGQL 356 >gi|320157276|ref|YP_004189655.1| ribosomal RNA large subunit methyltransferase N [Vibrio vulnificus MO6-24/O] gi|326423711|ref|NP_759425.2| ribosomal RNA large subunit methyltransferase N [Vibrio vulnificus CMCP6] gi|319932588|gb|ADV87452.1| ribosomal RNA large subunit methyltransferase N [Vibrio vulnificus MO6-24/O] gi|319999069|gb|AAO08952.2| Ribosomal RNA large subunit methyltransferase N [Vibrio vulnificus CMCP6] Length = 374 Score = 265 bits (678), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 143/336 (42%), Positives = 198/336 (58%), Gaps = 20/336 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ KWIY G+ DF M++I++++R L Q I+ P + + + S DGT KW +R Sbjct: 29 FRADQVMKWIYHFGVDDFDNMTNINKQLREKLKQKCEIVAPVVSEAQHSSDGTIKWAMRV 88 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G ++ETVYIPE+ R TLCVSSQVGC+L C FC T Q RNL EI+ QV Sbjct: 89 ------GDQDVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A +G + GR+ I+N+VMMGMGEPL N N+ +L I D +G Sbjct: 143 RAAREVG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFG 191 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 SKRR+T+STSG V + ++ +I V LAISLHA ++ LR+ ++PIN ++ ++ + + R Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASVR 251 Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 Y SNA R +T EYV+L +ND A L +++K P KINLIPFNP+PG Y Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAQLMKDTPCKINLIPFNPYPGSPYKKP 311 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F + + + ++ IR RG DI AACGQL Sbjct: 312 SNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQL 347 >gi|37678948|ref|NP_933557.1| hypothetical protein VV0764 [Vibrio vulnificus YJ016] gi|81758246|sp|Q7MNF3|RLMN_VIBVY RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|37197690|dbj|BAC93528.1| predicted Fe-S-cluster redox enzyme [Vibrio vulnificus YJ016] Length = 374 Score = 265 bits (678), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 143/336 (42%), Positives = 198/336 (58%), Gaps = 20/336 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ KWIY G+ DF M++I++++R L Q I+ P + + + S DGT KW +R Sbjct: 29 FRADQVMKWIYHFGVDDFDNMTNINKQLREKLKQKCEIVAPVVSEAQHSSDGTIKWAMRV 88 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G ++ETVYIPE+ R TLCVSSQVGC+L C FC T Q RNL EI+ QV Sbjct: 89 ------GDQDVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A +G + GR+ I+N+VMMGMGEPL N N+ +L I D +G Sbjct: 143 RAAREVG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFG 191 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 SKRR+T+STSG V + ++ +I V LAISLHA ++ LR+ ++PIN ++ ++ + + R Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASVR 251 Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 Y SNA R +T EYV+L +ND A L +++K P KINLIPFNP+PG Y Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAQLMKDTPCKINLIPFNPYPGSPYKKP 311 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F + + + ++ IR RG DI AACGQL Sbjct: 312 SNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQL 347 >gi|81587943|sp|Q8DEZ6|RLMN_VIBVU RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase Length = 374 Score = 265 bits (678), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 143/336 (42%), Positives = 198/336 (58%), Gaps = 20/336 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ KWIY G+ DF M++I++++R L Q I+ P + + + S DGT KW +R Sbjct: 29 FRADQVMKWIYHFGVDDFDNMTNINKQLREKLKQKCEIVAPVVSEAQHSSDGTIKWAMRV 88 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G ++ETVYIPE+ R TLCVSSQVGC+L C FC T Q RNL EI+ QV Sbjct: 89 ------GDQDVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A +G + GR+ I+N+VMMGMGEPL N N+ +L I D +G Sbjct: 143 RAAREVG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFG 191 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 SKRR+T+STSG V + ++ +I V LAISLHA ++ LR+ ++PIN ++ ++ + + R Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASVR 251 Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 Y SNA R +T EYV+L +ND A L +++K P KINLIPFNP+PG Y Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAQLMKDTPCKINLIPFNPYPGSPYKKP 311 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F + + + ++ IR RG DI AACGQL Sbjct: 312 SNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQL 347 >gi|323143782|ref|ZP_08078450.1| 23S rRNA m2A2503 methyltransferase [Succinatimonas hippei YIT 12066] gi|322416495|gb|EFY07161.1| 23S rRNA m2A2503 methyltransferase [Succinatimonas hippei YIT 12066] Length = 357 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 147/335 (43%), Positives = 200/335 (59%), Gaps = 17/335 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R +Q KWIY G+ DF M++I +++R L + I PEIV E+ S DGT KW L Sbjct: 20 FRATQFLKWIYQYGVTDFDLMTNIKKDLREKLKEIACIKAPEIVTEQRSSDGTVKWALD- 78 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 IG +ETV IPE+ R TLC+S+QVGC + C+FC TG RNL+ EI+ QV Sbjct: 79 ----IGDGQLVETVLIPEEGRNTLCISTQVGCPVKCAFCRTGASGFNRNLSVSEIIGQVW 134 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A S +G F E+ + ISN+VMMGMGEPL N D V K I + + Sbjct: 135 RAASRVG-FSQNEE---------QKPISNVVMMGMGEPLYNVDAVLKVTEILLNDNAFAL 184 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 SKRR+T+STSG P I ++ ++ V LA+SLHA +++LR++LVP+N+KY +++++ + R+ Sbjct: 185 SKRRVTISTSGVAPIIDKIAGKVDVALALSLHAPNDELRDVLVPLNKKYKIDVVLKSVRN 244 Query: 273 YPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 Y SNA + T EYV+L INDS A L ++LK P KINLIPFNP E+ Sbjct: 245 YLSKSNANCGKATIEYVLLDHINDSTDQAEELARLLKDTPCKINLIPFNPHEQSEFKRPS 304 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + F + + GY+ RT RG DI AACGQL Sbjct: 305 NSRVDRFYKVLTGHGYTVMTRTTRGDDIAAACGQL 339 >gi|189426654|ref|YP_001953831.1| ribosomal RNA large subunit methyltransferase N [Geobacter lovleyi SZ] gi|189422913|gb|ACD97311.1| radical SAM enzyme, Cfr family [Geobacter lovleyi SZ] Length = 351 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 144/354 (40%), Positives = 212/354 (59%), Gaps = 32/354 (9%) Query: 28 QRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI--IYPEIVDEKISCDGT 85 Q R R +QI+KW+Y + F M+++S+ +R L + I + PE V+ + DGT Sbjct: 24 QGKERYRATQIFKWLYQHDVSSFDEMTNVSKALRAELVRTACISRLEPETVE--VGSDGT 81 Query: 86 RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAE 145 RK+L + +E+V IP++ R TLC+SSQ GC++ C+FC TGT L RNLT Sbjct: 82 RKYLF-----MLEDGNAVESVIIPDEDRNTLCISSQAGCAMQCAFCLTGTFSLTRNLTTA 136 Query: 146 EILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS 205 EI+ Q+L + D+E + NIVMMGMGEPL N DNV +L I + Sbjct: 137 EIVNQILAVQ---------RDVE----------VRNIVMMGMGEPLHNLDNVIPALQIMA 177 Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEM 265 + GL S RR+T+ST G VP + R+G E+ V LA+SL+A +++LR+ ++P+N+ YP+ Sbjct: 178 EDNGLQLSSRRVTVSTCGLVPELERLGREVTVNLAVSLNATTDELRDRIMPVNKAYPIAT 237 Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE 325 L+ A ++YP L R+IT EYV+L G+ND+P DA L+++L IP KINLIPFNP G + Sbjct: 238 LLAALKNYP-LPGRRKITIEYVLLGGLNDTPEDAKRLVRLLSDIPCKINLIPFNPHEGAD 296 Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQE 379 + + + F + + ++ R RG DI AACGQLK ++ + P QE Sbjct: 297 FRPPSRAALDAFHKYLLDRHFTVITRDSRGSDISAACGQLKG---KLDRKPSQE 347 >gi|328953509|ref|YP_004370843.1| Ribosomal RNA large subunit methyltransferase N [Desulfobacca acetoxidans DSM 11109] gi|328453833|gb|AEB09662.1| Ribosomal RNA large subunit methyltransferase N [Desulfobacca acetoxidans DSM 11109] Length = 350 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 155/344 (45%), Positives = 209/344 (60%), Gaps = 23/344 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ KW++ +G +F M+DI +EVRHLL + I ++ + S DG+ K F Sbjct: 27 FRARQVQKWLF-KGATEFNAMTDIGKEVRHLLQEKSYISQLALLARRRSADGSEK----F 81 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G V IE+V IPE TLC+SSQVGC+ C FC TG + L RNL+ EI+ QVL Sbjct: 82 SFGLSDGEV-IESVLIPENDHYTLCLSSQVGCAQGCRFCLTGRRGLTRNLSPAEIINQVL 140 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 ARSL+G + ISN+V MGMGEPL NF N+ K+L+I GL+F Sbjct: 141 AARSLVGK---------------RQAISNLVFMGMGEPLDNFANLVKALTIILAPWGLNF 185 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S RR+T+ST G P I +G I V LA+SL+A ++ LR+ L+P+NRKYPL +I+ACR Sbjct: 186 SYRRVTVSTVGLAPLIPALGHAIRVNLAVSLNAPNDALRSQLMPVNRKYPLAQIIEACRA 245 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 +P L RRITF YV+L+GIND+P A L ++L+G AKINLIPFNP + + Sbjct: 246 FP-LPPHRRITFCYVLLQGINDTPSHARELSRLLQGFRAKINLIPFNPDSCLPFKRPTPE 304 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR-IPKV 375 ++ F + + + Y++ IR RG DI AACGQL +R IP V Sbjct: 305 AVLAFQDILIQKHYTTLIRESRGADISAACGQLAGEVQRDIPPV 348 >gi|258592798|emb|CBE69107.1| putative pyruvate formate lyase activating enzyme 2 (yfgB) [NC10 bacterium 'Dutch sediment'] Length = 372 Score = 264 bits (675), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 153/364 (42%), Positives = 216/364 (59%), Gaps = 28/364 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K L G+ EE+E + G P R Q++ WIY R F M+D+ +R L Sbjct: 21 KIDLKGLSLEEMERVVSDHGEPV----YRGRQLFHWIYARDAHTFAEMTDLPIALRARLA 76 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +H +I + ++IS DGTRK+LL +IETV IP++ R T C+S+QVGC+ Sbjct: 77 EHTAIGALTPLAKEISRDGTRKYLL-----GCTDERQIETVLIPDERRLTACLSTQVGCA 131 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 L C+FC TG VR+L + E++ QVL L R L G +I N+V+ Sbjct: 132 LACAFCLTGKMGFVRHLQSGEVVDQVLALQRDL----------------QPGERIGNLVL 175 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MGMGEPL N+D K+L+I S MGL++ RRITLST G VP I R+G+ +GV LA+SL Sbjct: 176 MGMGEPLHNYDATVKALTILSHPMGLAYPPRRITLSTVGLVPEIVRLGQSGLGVNLAVSL 235 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++LR+ LVPINR+YPL+ L+ A R YP L + RR+TFEYV++ G+ND DA L+ Sbjct: 236 HASTDELRDRLVPINRRYPLKELMVALRAYP-LPSRRRLTFEYVLIDGVNDRSEDARELV 294 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+L+G+ K+NL+ N P + Q+ + F ++ + + IR RGLDI AACG Sbjct: 295 KLLRGLRCKVNLLSLNEAPAIPFRRPSQERVEMFQRILRSADILATIRESRGLDISAACG 354 Query: 364 QLKS 367 L + Sbjct: 355 LLAT 358 >gi|108757013|ref|YP_631737.1| radical SAM protein [Myxococcus xanthus DK 1622] gi|123074312|sp|Q1D6I6|RLMN2_MYXXD RecName: Full=Ribosomal RNA large subunit methyltransferase N 2; AltName: Full=23S rRNA m2A2503 methyltransferase 2 gi|108460893|gb|ABF86078.1| radical SAM enzyme, Cfr family [Myxococcus xanthus DK 1622] Length = 378 Score = 264 bits (675), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 148/336 (44%), Positives = 203/336 (60%), Gaps = 17/336 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD-EKISCDGTRKWLLR 91 R QI++W++ RG F M+D+S+ +R L I+ P + D E S DGT K+ R Sbjct: 47 FRAPQIYRWLHQRGATSFDEMTDLSKVLREKLRARAEIV-PLVKDCELRSTDGTIKY--R 103 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 + R IE+VY+P + R TLCVS+QVGC++ C FC TGT L RNLT EI+ QV Sbjct: 104 WKTR---DGRYIESVYMPTEDRRTLCVSTQVGCAMACGFCMTGTMGLKRNLTPSEIVAQV 160 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 + G E + R +SN+V MGMGEPL NF+N+K +LSI G + Sbjct: 161 HAVNREVRKNEGHETL---------RPLSNLVFMGMGEPLHNFENLKTALSILQSEDGPN 211 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 FS R IT+ST G VP I R G+E V LAISL+A +++ R+ +P+NRK+ + L+DACR Sbjct: 212 FSHRHITVSTVGLVPMIERFGKETDVKLAISLNASTDEQRSKTMPVNRKWNIAALLDACR 271 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 +P L RRITFEYV++KG ND+ DA LI++LKGIP K+NLIP+N PG + + + Sbjct: 272 KFP-LRQGRRITFEYVLIKGFNDADEDAHRLIELLKGIPVKVNLIPYNENPGLGFHTTGE 330 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 + F + ++ IR RG DI ACGQL + Sbjct: 331 ERAEEFRAILADGHVAAYIRRNRGRDIAGACGQLAN 366 >gi|220931837|ref|YP_002508745.1| radical SAM enzyme, Cfr family [Halothermothrix orenii H 168] gi|219993147|gb|ACL69750.1| radical SAM enzyme, Cfr family [Halothermothrix orenii H 168] Length = 349 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 152/367 (41%), Positives = 222/367 (60%), Gaps = 25/367 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 KE L + R+EL K G P R SQ++ WIY G+ +F M+++ +R L Sbjct: 4 KEDLKSLSRKELLMWFEKRGYPS----FRASQLFNWIYRNGVDEFSRMNNLPLVLREELE 59 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGC 124 + + +IV++ + DGT K+L + IE+V+IP E SR ++C+SSQVGC Sbjct: 60 EKSYLTKLKIVNKSKAEDGTVKYLWE-----LKDGETIESVFIPYEGSRNSVCISSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 SL C FC TG L+RNLT EI+ QVL + + + D G ++SN+V Sbjct: 115 SLGCKFCATGLTGLIRNLTPGEIVDQVLQIQKEISNDKYGSP------------RVSNVV 162 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 MGMGEPL N +V K++ I +DS GL+ KR+IT+STSG VP I + ++ + ++LAIS Sbjct: 163 FMGMGEPLANMKSVLKAIEIMNDSKGLNIGKRKITVSTSGLVPQIKELADKKLQIVLAIS 222 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 L+A +N LR+ L+PINRK+PLE L++A R+Y ++N RR+TFEYV+LKG NDSP A L Sbjct: 223 LNAPNNALRDKLMPINRKFPLEKLLEAVRYYTEVTN-RRVTFEYVLLKGTNDSPEHAFQL 281 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + +L I +NLIPFNP E+ ++ + F + + +G + +R RG I AAC Sbjct: 282 VNLLSDIHGHVNLIPFNPVQETEFKRPSKETVNRFKDILINNGVETTVRQERGTRIEAAC 341 Query: 363 GQLKSLS 369 GQL+ L+ Sbjct: 342 GQLRRLN 348 >gi|319794361|ref|YP_004156001.1| radical SAM protein [Variovorax paradoxus EPS] gi|315596824|gb|ADU37890.1| radical SAM enzyme, Cfr family [Variovorax paradoxus EPS] Length = 384 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 141/338 (41%), Positives = 199/338 (58%), Gaps = 21/338 (6%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R R +Q+++WI+ RG DF M+D+++ +R L + ++ + S DGT KWL Sbjct: 25 RFRATQLFRWIHQRGASDFTQMTDLAKSLREKLATTARVEALPVLTQHESKDGTIKWLFD 84 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 +G +E V+IPE RGTLCVSSQ GC++ C FC TG Q RNL+ EI+ Q+ Sbjct: 85 -----VGDGNAVEAVFIPEDDRGTLCVSSQAGCAVGCRFCSTGHQGFSRNLSTGEIVAQL 139 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A L + R ISN+VMMGMGEPL N+ + +L D Sbjct: 140 WFAEHFLRKH----------LKRDERVISNVVMMGMGEPLQNYTALVPALRTMLDDNAYG 189 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S+RR+T+STSG VP I R+G + V +A+SLHA ++ LR+ LVP+NRKYP+ L++AC+ Sbjct: 190 LSRRRVTVSTSGVVPMIDRLGTDCAVAMAVSLHAPNDALRDDLVPLNRKYPIAELLEACK 249 Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILK--GIPAKINLIPFNPWPGCEYL 327 Y L +A R ITFEY ML G+ND P A L+++++ + K NLIPFNP+P L Sbjct: 250 RY--LEHAPRDFITFEYCMLDGVNDQPEHARQLVELVRKHDVSCKFNLIPFNPFPASGLL 307 Query: 328 CSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 S Q ++ F+ + +G + +R RG DI AACGQL Sbjct: 308 RSPQPRVLAFARTLSEAGLVTTVRKTRGDDIDAACGQL 345 >gi|269103278|ref|ZP_06155975.1| ribosomal RNA large subunit methyltransferase N [Photobacterium damselae subsp. damselae CIP 102761] gi|268163176|gb|EEZ41672.1| ribosomal RNA large subunit methyltransferase N [Photobacterium damselae subsp. damselae CIP 102761] Length = 372 Score = 263 bits (673), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 153/354 (43%), Positives = 198/354 (55%), Gaps = 31/354 (8%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 EELEE R QI KWIY G DF M++I++++R L I P Sbjct: 22 EELEEKAF-----------RADQIMKWIYHFGCDDFDQMTNINKKLREKLKVIAEIKAPT 70 Query: 75 IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134 + + S DGT KW +R G ++ETVYIP+ R TLCVSSQVGC+L C FC T Sbjct: 71 VSAAQYSKDGTIKWAMRV------GDQDVETVYIPDDDRATLCVSSQVGCALECKFCSTA 124 Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCN 193 Q RNL EI+ QV A +G V GR+ I+N+VMMGMGEPL N Sbjct: 125 QQGFNRNLCVSEIIGQVWRAAKEIG-----------VQKETGRRPITNVVMMGMGEPLLN 173 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNI 253 N+ +L I D +G SKRR+T+STSG V + ++ I V LAISLHA +++LR+ Sbjct: 174 MKNLLPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGNIDVALAISLHAPTDELRSQ 233 Query: 254 LVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKGIPA 311 ++PIN ++ +E +DA R Y +NA R+T EYV+L IND A L K+LK PA Sbjct: 234 IMPINNRWNIEEFLDAVRRYVNSTNANRGRVTVEYVLLDHINDDMEHARQLAKVLKDTPA 293 Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 KINLIPFNP+PG Y I F + + + +R RG DI AACGQL Sbjct: 294 KINLIPFNPYPGSPYNKPSNSRIDRFMKTLMEYDITVTVRKTRGDDIDAACGQL 347 >gi|149190092|ref|ZP_01868369.1| hypothetical protein VSAK1_12070 [Vibrio shilonii AK1] gi|148836122|gb|EDL53082.1| hypothetical protein VSAK1_12070 [Vibrio shilonii AK1] Length = 374 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 145/336 (43%), Positives = 197/336 (58%), Gaps = 20/336 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ KWIY G DF+ M++I++++R L + I P + + + S DGT KW +R Sbjct: 29 FRADQVMKWIYHFGCDDFEKMTNINKKLREKLIRLAEIKAPTVSEAQHSSDGTIKWAMRV 88 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G ++ETVYIP+ R TLCVSSQVGC+L C FC T Q RNL EI+ QV Sbjct: 89 ------GDQDVETVYIPDDDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A +G + GR+ I+N+VMMGMGEPL N N+ +L I D +G Sbjct: 143 RAAREVG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLMPALEIMLDDLGFG 191 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 SKRR+T+STSG V + ++ EI V LAISLHA ++ LR+ ++PIN ++ +E + + R Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTGEIDVALAISLHAPNDKLRSEIMPINDRWDIEDFLASVR 251 Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 Y SNA R +T EYV+L +ND A L ++LK PAKINLIPFNP+PG Y Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELLKDTPAKINLIPFNPYPGSPYKKP 311 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F + + + Y+ +R RG DI AACGQL Sbjct: 312 SNSRIDRFMKTLMQYDYTVTVRKTRGDDIDAACGQL 347 >gi|187478836|ref|YP_786860.1| hypothetical protein BAV2346 [Bordetella avium 197N] gi|123725044|sp|Q2KY87|RLMN_BORA1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|115423422|emb|CAJ49956.1| conserved hypothetical protein [Bordetella avium 197N] Length = 382 Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 142/337 (42%), Positives = 201/337 (59%), Gaps = 14/337 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +W++ R + F M+D++++ R L++ I + E+ S DGTRKWL Sbjct: 29 FRARQLQRWVHQRSVDSFDAMTDLARDFRAQLSERAIIEALPVNIEQRSSDGTRKWLFD- 87 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G IETV+IPE RGTLC+SSQ GC + C FC TG Q RNL EI+ Q+ Sbjct: 88 ----VGQGNAIETVFIPEDDRGTLCISSQAGCVVNCRFCSTGHQGFNRNLRTSEIIGQLW 143 Query: 153 LARSLLGDFPGCEDIEGMVIPSVG----RKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 A+ +L DI + + G R ISN+VMMGMGEPL N+D V +L + D Sbjct: 144 WAKRVLE-----ADIGSARLANAGAEDTRVISNVVMMGMGEPLLNYDQVLPALRLMLDDN 198 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 G S+RR+T+STSG VP + R+ ++ V LA+SLHA ++ LR+ LVP+N+KYPL+ L+ Sbjct: 199 GYGLSRRRVTVSTSGVVPMMDRLAQDCPVALAVSLHAPNDALRDDLVPLNKKYPLKELLA 258 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 AC Y + ITFEY ML GIND+ + A LI++ + + K+NLIPFNP+P Sbjct: 259 ACERYLAHAPRDFITFEYCMLDGINDTDQHAKELIQLARQVRCKLNLIPFNPFPASGLKR 318 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 S + F++ + +G + +R RG DI AACGQL Sbjct: 319 SAAPRVKVFAQRLMDAGIITTVRKTRGDDIDAACGQL 355 >gi|229505629|ref|ZP_04395139.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae BX 330286] gi|229510699|ref|ZP_04400178.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae B33] gi|229517821|ref|ZP_04407265.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae RC9] gi|229608647|ref|YP_002879295.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae MJ-1236] gi|229344536|gb|EEO09510.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae RC9] gi|229350664|gb|EEO15605.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae B33] gi|229357852|gb|EEO22769.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae BX 330286] gi|229371302|gb|ACQ61725.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae MJ-1236] Length = 377 Score = 263 bits (671), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 145/336 (43%), Positives = 195/336 (58%), Gaps = 20/336 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ KWIY G DF M++I++++R L I P + + + S DGT KW +R Sbjct: 33 FRAEQVMKWIYHFGCDDFDQMNNINKQLREKLKAKCEIRAPYVSEAQHSADGTIKWAMRV 92 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G ++ETVYIPE R TLCVSSQVGC+L C FC T Q RNL EI+ QV Sbjct: 93 ------GDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVW 146 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A +G + GR+ I+N+VMMGMGEPL N N+ +L I D +G Sbjct: 147 RAAREIG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFG 195 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 SKRR+T+STSG V + ++ +I V LAISLHA ++ LR+ ++PIN ++ +E ++ R Sbjct: 196 LSKRRVTVSTSGVVSGLEQMIGQIDVALAISLHAPNDKLRSEIMPINDRWNIEAFLEVVR 255 Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 Y SNA R +T EYV+L +ND A L ++LKG P KINLIPFNP+PG Y Sbjct: 256 RYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAELLKGTPCKINLIPFNPYPGSPYKKP 315 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F + + + ++ IR RG DI AACGQL Sbjct: 316 SNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQL 351 >gi|237747707|ref|ZP_04578187.1| ribosomal RNA large subunit methyltransferase N [Oxalobacter formigenes OXCC13] gi|229379069|gb|EEO29160.1| ribosomal RNA large subunit methyltransferase N [Oxalobacter formigenes OXCC13] Length = 387 Score = 263 bits (671), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 145/339 (42%), Positives = 204/339 (60%), Gaps = 19/339 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ G+ DF M+D+++ +R L + P+I+ + +S DGTRKWLL Sbjct: 28 FRAKQLQRWIHQFGVSDFAEMTDLAKSLRGKLELCAEVKAPDILKDTVSSDGTRKWLLD- 86 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G IETV+IPE +RGTLCVS+Q GC++ C FC TG Q RNLT EI+ Q+ Sbjct: 87 ----VGAGNAIETVFIPEDTRGTLCVSTQAGCAVNCLFCSTGKQGFSRNLTTAEIIGQLW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 +A + G D + R+ISN+VMMGMGEPL NFD +L + D Sbjct: 143 MAEFAVRRSKGLTDAKD------ERQISNVVMMGMGEPLFNFDASVSALKLMLDDNAYGL 196 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S+RR+T+STSG VP I R+ +E V LA+SLHA ++ LR+ LVP+N+K+PL+ L+ AC+ Sbjct: 197 SRRRVTVSTSGVVPMIDRLAKECPVALAVSLHAPNDTLRDHLVPLNKKHPLKELMAACQR 256 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP----AKINLIPFN--PWPGCEY 326 Y + ITFEY ML GIND+ A L+K++K P K+NLIPFN PG + Sbjct: 257 YLDYAPRDFITFEYCMLDGINDTDEHARELVKLVKHGPNPVSCKLNLIPFNSIAMPGLKR 316 Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 S + +F++ + +G + +R RG DI AACG L Sbjct: 317 --STDARVQSFAKILLDAGIVTTVRKARGEDIEAACGLL 353 >gi|121726066|ref|ZP_01679365.1| conserved hypothetical protein [Vibrio cholerae V52] gi|153216236|ref|ZP_01950336.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|153800552|ref|ZP_01955138.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|153829401|ref|ZP_01982068.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|227080936|ref|YP_002809487.1| hypothetical protein VCM66_0715 [Vibrio cholerae M66-2] gi|229513104|ref|ZP_04402570.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae TMA 21] gi|229523420|ref|ZP_04412827.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae TM 11079-80] gi|229525403|ref|ZP_04414808.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae bv. albensis VL426] gi|229530113|ref|ZP_04419503.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae 12129(1)] gi|254225020|ref|ZP_04918634.1| conserved hypothetical protein [Vibrio cholerae V51] gi|254285475|ref|ZP_04960439.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|262192502|ref|ZP_06050653.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae CT 5369-93] gi|297581156|ref|ZP_06943080.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|298499110|ref|ZP_07008917.1| cfr family radical SAM enzyme [Vibrio cholerae MAK 757] gi|254807221|sp|C3LT10|RLMN_VIBCM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|121631548|gb|EAX63918.1| conserved hypothetical protein [Vibrio cholerae V52] gi|124114381|gb|EAY33201.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|124123841|gb|EAY42584.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|125622407|gb|EAZ50727.1| conserved hypothetical protein [Vibrio cholerae V51] gi|148875121|gb|EDL73256.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|150424337|gb|EDN16274.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|227008824|gb|ACP05036.1| conserved hypothetical protein [Vibrio cholerae M66-2] gi|229333887|gb|EEN99373.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae 12129(1)] gi|229338984|gb|EEO04001.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae bv. albensis VL426] gi|229339783|gb|EEO04798.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae TM 11079-80] gi|229349997|gb|EEO14951.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae TMA 21] gi|262031661|gb|EEY50248.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae CT 5369-93] gi|297534472|gb|EFH73309.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|297543443|gb|EFH79493.1| cfr family radical SAM enzyme [Vibrio cholerae MAK 757] gi|327483542|gb|AEA77949.1| Ribosomal RNA large subunit methyltransferase N [Vibrio cholerae LMA3894-4] Length = 373 Score = 263 bits (671), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 145/336 (43%), Positives = 195/336 (58%), Gaps = 20/336 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ KWIY G DF M++I++++R L I P + + + S DGT KW +R Sbjct: 29 FRAEQVMKWIYHFGCDDFDQMNNINKQLREKLKAKCEIRAPYVSEAQHSADGTIKWAMRV 88 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G ++ETVYIPE R TLCVSSQVGC+L C FC T Q RNL EI+ QV Sbjct: 89 ------GDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A +G + GR+ I+N+VMMGMGEPL N N+ +L I D +G Sbjct: 143 RAAREIG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFG 191 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 SKRR+T+STSG V + ++ +I V LAISLHA ++ LR+ ++PIN ++ +E ++ R Sbjct: 192 LSKRRVTVSTSGVVSGLEQMIGQIDVALAISLHAPNDKLRSEIMPINDRWNIEAFLEVVR 251 Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 Y SNA R +T EYV+L +ND A L ++LKG P KINLIPFNP+PG Y Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAELLKGTPCKINLIPFNPYPGSPYKKP 311 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F + + + ++ IR RG DI AACGQL Sbjct: 312 SNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQL 347 >gi|15640776|ref|NP_230406.1| hypothetical protein VC0757 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591437|ref|ZP_01678715.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|153817298|ref|ZP_01969965.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|153822713|ref|ZP_01975380.1| conserved hypothetical protein [Vibrio cholerae B33] gi|153824544|ref|ZP_01977211.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|254847894|ref|ZP_05237244.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255744563|ref|ZP_05418514.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholera CIRS 101] gi|262161302|ref|ZP_06030413.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae INDRE 91/1] gi|81623203|sp|Q9KTX3|RLMN_VIBCH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|9655203|gb|AAF93922.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121546714|gb|EAX56891.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|126512214|gb|EAZ74808.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|126519744|gb|EAZ76967.1| conserved hypothetical protein [Vibrio cholerae B33] gi|149741762|gb|EDM55791.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|254843599|gb|EET22013.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255737594|gb|EET92988.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholera CIRS 101] gi|262029052|gb|EEY47705.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae INDRE 91/1] Length = 373 Score = 262 bits (670), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 145/336 (43%), Positives = 195/336 (58%), Gaps = 20/336 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ KWIY G DF M++I++++R L I P + + + S DGT KW +R Sbjct: 29 FRAEQVMKWIYHFGCDDFDQMNNINKQLREKLKAKCEIRAPYVSEAQHSADGTIKWAMRV 88 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G ++ETVYIPE R TLCVSSQVGC+L C FC T Q RNL EI+ QV Sbjct: 89 ------GDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A +G + GR+ I+N+VMMGMGEPL N N+ +L I D +G Sbjct: 143 RAAREIG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFG 191 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 SKRR+T+STSG V + ++ +I V LAISLHA ++ LR+ ++PIN ++ +E ++ R Sbjct: 192 LSKRRVTVSTSGVVSGLEQMIGQIDVALAISLHAPNDKLRSEIMPINDRWNIEAFLEVVR 251 Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 Y SNA R +T EYV+L +ND A L ++LKG P KINLIPFNP+PG Y Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAELLKGTPCKINLIPFNPYPGSPYKKP 311 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F + + + ++ IR RG DI AACGQL Sbjct: 312 SNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQL 347 >gi|148979605|ref|ZP_01815610.1| hypothetical protein VSWAT3_08963 [Vibrionales bacterium SWAT-3] gi|145961690|gb|EDK26987.1| hypothetical protein VSWAT3_08963 [Vibrionales bacterium SWAT-3] Length = 380 Score = 262 bits (670), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 139/336 (41%), Positives = 198/336 (58%), Gaps = 20/336 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ KW+Y G+ DF+ M++I++++R L + I+ P + + + S DGT KW + Sbjct: 29 FRADQVMKWMYHFGVDDFENMNNINKKLREKLQRRCEIVAPVVSEAQHSSDGTIKWAMSV 88 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G ++ETVYIP+ R TLCVSSQVGC+L C FC T Q RNL EI+ Q+ Sbjct: 89 ------GDQDVETVYIPDGDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIVGQIW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A +G + GR+ I+N+VMMGMGEPL N N+ SL I D +G + Sbjct: 143 RAAREIG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLMPSLEIMLDDLGFA 191 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 SKRR+T+STSG V + ++ + I V LAISLHA +++LR+ ++PIN ++ ++ + + R Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTDNIDVALAISLHAPNDELRSQIMPINDRWDIQDFLASVR 251 Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 Y SNA R +T EYV+L +ND A L +++K P KINLIPFNP+PG Y Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKDTPCKINLIPFNPYPGSPYKKP 311 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F + + Y+ +R RG DI AACGQL Sbjct: 312 SNSRIDRFQKTLMEYDYTVTVRKTRGDDIDAACGQL 347 >gi|167470721|ref|ZP_02335425.1| radical SAM domain protein, Cfr family [Yersinia pestis FV-1] Length = 319 Score = 262 bits (669), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 144/309 (46%), Positives = 186/309 (60%), Gaps = 20/309 (6%) Query: 60 VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119 +R L + I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVS Sbjct: 2 LRAKLQRVTEIRAPEVQKEQRSVDGTIKWAIKV------GDQQVETVYIPEADRATLCVS 55 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RK 178 SQVGC+L C FC T Q RNL EI+ QV A ++G + S G R Sbjct: 56 SQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGS-----------LKSTGTRP 104 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238 I+N+VMMGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V Sbjct: 105 ITNVVMMGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVA 164 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY--PGLSNARRITFEYVMLKGINDSP 296 LAISLHA ++D+R+ +VPINRKY +E + A R Y +N R+T EYVML INDS Sbjct: 165 LAISLHAPTDDIRDEIVPINRKYNIETFLAAVRRYLDKSKANGGRVTVEYVMLDHINDST 224 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 A L + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG Sbjct: 225 EQAHQLAECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGD 284 Query: 357 DILAACGQL 365 DI AACGQL Sbjct: 285 DIDAACGQL 293 >gi|253701168|ref|YP_003022357.1| ribosomal RNA large subunit methyltransferase N [Geobacter sp. M21] gi|251776018|gb|ACT18599.1| radical SAM enzyme, Cfr family [Geobacter sp. M21] Length = 351 Score = 262 bits (669), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 142/337 (42%), Positives = 207/337 (61%), Gaps = 29/337 (8%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ--HFSIIYPEIVDEKISCDGTRKWL 89 R R QI+KW+Y F+ M+++S+E R +L + S + PE+V+ S DGTRK+L Sbjct: 25 RFRAKQIFKWLYQLDAGSFEEMTNVSKEFRSMLGEIAQISNLTPEVVE--ASEDGTRKYL 82 Query: 90 LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149 R G +E+V IP++ R TLC+SSQVGC++ C+FC TG+ L RNLT EI+ Sbjct: 83 FRL----FDGSA-VESVLIPDEGRNTLCISSQVGCAMGCAFCLTGSFGLSRNLTTAEIVN 137 Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209 QV + D P +SNIV MGMGEPL N + V ++ I +D G Sbjct: 138 QVCAVKR---DQP----------------VSNIVFMGMGEPLANLNGVIPAVQILTDPDG 178 Query: 210 LSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 FS R++T+STSG VP +A +G V LA+SL+A ++++R+ ++P+NR+YPL L+ A Sbjct: 179 FQFSTRKVTVSTSGLVPEMAELGRGCTVNLAVSLNATTDEVRSRIMPVNRRYPLAELLAA 238 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 C+ +P L + R IT EYVM++ +NDS DA L++++ IP+K+NLIPFN GC++ C Sbjct: 239 CKAFP-LPSRRWITMEYVMIRDLNDSLEDAKRLVRLISNIPSKVNLIPFNEHEGCDFKCP 297 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 Q+ I F + + + R+ RG DI AACGQLK Sbjct: 298 TQESIDRFHKYLLDKNVTVITRSSRGSDISAACGQLK 334 >gi|89901088|ref|YP_523559.1| hypothetical protein Rfer_2310 [Rhodoferax ferrireducens T118] gi|123397164|sp|Q21W25|RLMN_RHOFD RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|89345825|gb|ABD70028.1| conserved hypothetical protein [Rhodoferax ferrireducens T118] Length = 382 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 140/349 (40%), Positives = 200/349 (57%), Gaps = 20/349 (5%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R R Q+++WI+ +G +F MSD+++ +R L + P+++ + IS DGT KWL Sbjct: 24 RYRAVQLFRWIHQKGASNFDDMSDLAKSLREKLKVSAQVKAPDLISQHISSDGTIKWLFD 83 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 +GG +E V+IPE+ RGTLC+SSQ GC++ C FC TG Q RNL EI+ Q+ Sbjct: 84 -----VGGGDAVEAVFIPEEDRGTLCISSQAGCAMGCRFCSTGHQGFSRNLKTGEIIAQL 138 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A L + R ISN+VMMGMGEPL N+ + +L D G Sbjct: 139 WFAEHFLRKH----------LQRDERVISNVVMMGMGEPLQNYAELVPALRAMLDDHGYG 188 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S+RR+T+STSG VP + R+ + V LA+SLHA ++ LR+ LVP+N+KY L L++AC Sbjct: 189 LSRRRVTVSTSGVVPMMDRLARDCPVALAVSLHAPNDLLRDDLVPLNKKYSLAELLNACN 248 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK-----GIPAKINLIPFNPWPGCEY 326 Y + ITFEY ML+ +ND P A L+++++ G+ K NLIPFNP+P Sbjct: 249 RYLAYAPRDFITFEYCMLEDVNDQPEHAQQLVRLVQHYSSGGVWCKFNLIPFNPFPASGL 308 Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKV 375 S + I F++ + +G + IR RG DI AACGQL K +V Sbjct: 309 TRSTPERIQAFAKILSDAGIVTTIRKTRGDDIDAACGQLAGEVKDRTRV 357 >gi|262199015|ref|YP_003270224.1| radical SAM enzyme, Cfr family [Haliangium ochraceum DSM 14365] gi|262082362|gb|ACY18331.1| radical SAM enzyme, Cfr family [Haliangium ochraceum DSM 14365] Length = 378 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 147/347 (42%), Positives = 210/347 (60%), Gaps = 23/347 (6%) Query: 22 LKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKIS 81 L++G P R R QIW+W++ G+ + M+++ + +R LL + ++ + + S Sbjct: 33 LELGQP----RYRGEQIWRWVHGAGVTRLEDMANLPRTLRELLAERTTLGTLRVDAAQTS 88 Query: 82 CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141 DGTRK LR IETV IP+ + T C+SSQVGC+L C FC T L R+ Sbjct: 89 RDGTRKLRLR-----TRDGRAIETVLIPDGDKLTQCISSQVGCALDCDFCATAKLGLTRH 143 Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 L EI+ QV R+LL + V P R+I+N+V MGMGEPL N+ NV KSL Sbjct: 144 LDPGEIVDQVYRGRALLAE----------VEPE--RRITNLVYMGMGEPLHNYANVVKSL 191 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRK 260 + + +G + S+RRIT+ST G VP I ++G E++ LAISL+A S+++R+ ++P+NRK Sbjct: 192 RLLTSELGANLSQRRITVSTVGQVPGIEKLGREDVRPNLAISLNASSDEIRDRIMPVNRK 251 Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 + + L+ A R YP L RR+TFEYV+L G+NDS DA L ++L+GIP K+N+IP+NP Sbjct: 252 WNIARLLQAVRDYP-LERRRRVTFEYVLLAGVNDSMADAARLSRLLRGIPCKLNIIPWNP 310 Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 PG Y + F KR G + +RTPRG DI AACGQL + Sbjct: 311 HPGAPYQRPSAHAVEAFQNEAKRLGLPTYLRTPRGDDIDAACGQLAA 357 >gi|156973378|ref|YP_001444285.1| hypothetical protein VIBHAR_01065 [Vibrio harveyi ATCC BAA-1116] gi|205829926|sp|A7MU39|RLMN_VIBHB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|156524972|gb|ABU70058.1| hypothetical protein VIBHAR_01065 [Vibrio harveyi ATCC BAA-1116] Length = 375 Score = 261 bits (667), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 140/336 (41%), Positives = 196/336 (58%), Gaps = 20/336 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ KWIY G+ DF M++I++++R L I P + + + S DGT KW ++ Sbjct: 29 FRADQVMKWIYHFGVDDFDNMTNINKKLREKLQHKCEIKAPTVAEAQHSSDGTIKWAMKV 88 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G ++ETVYIPE R TLCVSSQVGC+L C FC T Q RNL EI+ QV Sbjct: 89 ------GDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A +G + GR+ I+N+VMMGMGEPL N N+ +L I D +G Sbjct: 143 RAAREIG-----------LQKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFG 191 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 SKRR+T+STSG V + ++ +I V LAISLHA +++LR+ ++PIN ++ ++ + + R Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDELRSQIMPINDRWDIQDFLASVR 251 Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 Y SNA R +T EYV+L +ND A L +++K P KINLIPFNP+PG Y Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKDTPCKINLIPFNPYPGSPYKKP 311 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F + + + ++ +R RG DI AACGQL Sbjct: 312 SNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQL 347 >gi|262165069|ref|ZP_06032806.1| ribosomal RNA large subunit methyltransferase N [Vibrio mimicus VM223] gi|262172172|ref|ZP_06039850.1| ribosomal RNA large subunit methyltransferase N [Vibrio mimicus MB-451] gi|261893248|gb|EEY39234.1| ribosomal RNA large subunit methyltransferase N [Vibrio mimicus MB-451] gi|262024785|gb|EEY43453.1| ribosomal RNA large subunit methyltransferase N [Vibrio mimicus VM223] Length = 373 Score = 261 bits (667), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 143/336 (42%), Positives = 196/336 (58%), Gaps = 20/336 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ KWIY G DF M++I++++R L I P + + + S DGT KW +R Sbjct: 29 FRAEQVMKWIYHFGCDDFDQMNNINKQLREKLKAKCEIRAPYVSEAQHSADGTIKWAMRV 88 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G ++ETVYIPE+ R TLCVSSQVGC+L C FC T Q RNL EI+ QV Sbjct: 89 ------GDQDVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A +G + GR+ I+N+VMMGMGEPL N N+ +L I D +G Sbjct: 143 RAAREIG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFG 191 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 SKRR+T+STSG V + ++ +I V LAISLHA +++LR+ ++PIN ++ ++ + R Sbjct: 192 LSKRRVTVSTSGVVSGLEQMIGQIDVALAISLHAPNDELRSQIMPINDRWNIQEFLATVR 251 Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 Y SNA R +T EYV+L +ND A L +++KG P KINLIPFNP+PG Y Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAELMKGTPCKINLIPFNPYPGSPYKKP 311 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F + + + ++ IR RG DI AACGQL Sbjct: 312 SNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQL 347 >gi|222056625|ref|YP_002538987.1| radical SAM enzyme, Cfr family [Geobacter sp. FRC-32] gi|221565914|gb|ACM21886.1| radical SAM enzyme, Cfr family [Geobacter sp. FRC-32] Length = 345 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 141/348 (40%), Positives = 204/348 (58%), Gaps = 28/348 (8%) Query: 28 QRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRK 87 Q R R QI+KW+Y + F M+++S++ R L + I E + S DGT+K Sbjct: 21 QGKERFRAKQIFKWLYQQNATSFAQMTNLSKDFRAELEKTARISNLEAEAVESSADGTKK 80 Query: 88 WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147 +L R + +E+V IP++ R TLC+SSQVGC++ C FC TGT +L RNLT EI Sbjct: 81 YLFR-----LSDGNAVESVLIPDEDRNTLCISSQVGCAMGCEFCLTGTFRLTRNLTTAEI 135 Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207 + QV + + NIV MGMGEPL N +NV +L I +D Sbjct: 136 VNQVCAVKK-------------------NEPVRNIVFMGMGEPLANLENVIGALRILTDP 176 Query: 208 MGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267 G FS R++TLST+G VP +A +G + V LAIS++A ++++R+ ++P+NR+YPL+ L+ Sbjct: 177 DGFQFSTRKVTLSTAGLVPEMAELGAAVMVNLAISMNATTDEVRDRIMPVNRRYPLKELL 236 Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL 327 AC+ +P L + R IT EYVM+KG+NDS DA L++++ P+K+NLIPFN GC+ Sbjct: 237 AACKAFP-LPSRRWITVEYVMIKGVNDSLDDAKRLVRLISTFPSKVNLIPFNEHEGCDLR 295 Query: 328 CSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKV 375 Q I F + + + R+ RG DI AACGQLK R+ KV Sbjct: 296 TPTQDSIDRFHKFLLDKHVTVITRSSRGSDISAACGQLKG---RLDKV 340 >gi|163802471|ref|ZP_02196364.1| hypothetical protein 1103602000590_AND4_19477 [Vibrio sp. AND4] gi|159173772|gb|EDP58587.1| hypothetical protein AND4_19477 [Vibrio sp. AND4] Length = 375 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 141/336 (41%), Positives = 196/336 (58%), Gaps = 20/336 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ KWIY G+ DF M++I++++R L I P + + + S DGT KW ++ Sbjct: 29 FRADQVMKWIYHFGVDDFDNMTNINKKLREKLQYKCEIKAPTVAEAQHSSDGTIKWAMKV 88 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G ++ETVYIPE R TLCVSSQVGC+L C FC T Q RNL EI+ QV Sbjct: 89 ------GDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A +G + GR+ I+N+VMMGMGEPL N N+ +L I D +G Sbjct: 143 RAAREIG-----------LQKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFG 191 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 SKRR+T+STSG V + ++ +I V LAISLHA +++LR+ ++PIN ++ ++ + + R Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDELRSQIMPINDRWDIQDFLASVR 251 Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 Y SNA R +T EYV+L IND A L +++K P KINLIPFNP+PG Y Sbjct: 252 RYIASSNANRGKVTVEYVLLDHINDDMDHARELAELMKDTPCKINLIPFNPYPGSPYKKP 311 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F + + + ++ +R RG DI AACGQL Sbjct: 312 SNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQL 347 >gi|258619955|ref|ZP_05714995.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|258627187|ref|ZP_05721975.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258580489|gb|EEW05450.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258587688|gb|EEW12397.1| conserved hypothetical protein [Vibrio mimicus VM573] Length = 396 Score = 260 bits (665), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 143/336 (42%), Positives = 196/336 (58%), Gaps = 20/336 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ KWIY G DF M++I++++R L I P + + + S DGT KW +R Sbjct: 52 FRAEQVMKWIYHFGCDDFDQMNNINKQLREKLKAKCEIRAPYVSEAQHSADGTIKWAMRV 111 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G ++ETVYIPE+ R TLCVSSQVGC+L C FC T Q RNL EI+ QV Sbjct: 112 ------GDQDVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVW 165 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A +G + GR+ I+N+VMMGMGEPL N N+ +L I D +G Sbjct: 166 RAAREIG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFG 214 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 SKRR+T+STSG V + ++ +I V LAISLHA +++LR+ ++PIN ++ ++ + R Sbjct: 215 LSKRRVTVSTSGVVSGLEQMIGQIDVALAISLHAPNDELRSQIMPINDRWNIQEFLATVR 274 Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 Y SNA R +T EYV+L +ND A L +++KG P KINLIPFNP+PG Y Sbjct: 275 RYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAELMKGTPCKINLIPFNPYPGSPYKKP 334 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F + + + ++ IR RG DI AACGQL Sbjct: 335 SNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQL 370 >gi|254248069|ref|ZP_04941390.1| hypothetical protein BCPG_02893 [Burkholderia cenocepacia PC184] gi|124872845|gb|EAY64561.1| hypothetical protein BCPG_02893 [Burkholderia cenocepacia PC184] Length = 379 Score = 260 bits (664), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 137/342 (40%), Positives = 199/342 (58%), Gaps = 16/342 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ DF GM+D+++ +R L SI+ P+I + +S DGTRKWL+ Sbjct: 29 FRAKQLQRWIHQYNAGDFDGMTDLAKSLREKLKGRASIVMPDIASDHVSTDGTRKWLID- 87 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +ETV+IPE++RGTLCVSSQ GC++ C FC TG Q RNL+ EI+ Q+ Sbjct: 88 ----VGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLR 143 Query: 153 LA----RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 +A R+ LG PG R ++N+ N+ V ++ + D Sbjct: 144 MAEFALRASLGRAPGPNG-------KAERVVTNVSDDEHERAALNYSAVVPAMRLMLDDN 196 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S+RR+TLSTSG VP + R+G E+ V LA+SLHA ++ LR+ LVP+N+KYPL L+ Sbjct: 197 AYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNKKYPLRELMA 256 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 AC+ Y ++ ITFEY ML G+ND+ A L+ + + +P K NLIPFNP+P + Sbjct: 257 ACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRDVPCKFNLIPFNPFPESGLIR 316 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 S + I F++ + +G + +R RG DI AACGQL K Sbjct: 317 SKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDAACGQLAGAVK 358 >gi|153005041|ref|YP_001379366.1| radical SAM protein [Anaeromyxobacter sp. Fw109-5] gi|205829648|sp|A7HCD6|RLMN_ANADF RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|152028614|gb|ABS26382.1| radical SAM enzyme, Cfr family [Anaeromyxobacter sp. Fw109-5] Length = 377 Score = 260 bits (664), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 143/338 (42%), Positives = 204/338 (60%), Gaps = 21/338 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +W+ +G ++D+ + +R L + ++ E E+ S DGT KW R Sbjct: 36 FRARQLHRWLQQKGAASLDELTDVPRALRAALAEATTLTTLERATEQRSVDGTIKWTWRT 95 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + +E+VY+PE R TLCVSSQVGC++ C+FC TGT L RNLT EI+ QV Sbjct: 96 HDGKL-----VESVYMPEPDRRTLCVSSQVGCAVGCTFCLTGTMGLARNLTPGEIVEQVH 150 Query: 153 LARSL---LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209 A LG+ G R ++N+V MGMGEPL N+ ++K +L + G Sbjct: 151 RANRRIVELGEGQGP------------RPLTNLVFMGMGEPLANYRSLKVALDLLLSEDG 198 Query: 210 LSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 +FS R +T+STSG VP I ++GEE V LAISL+A ++ R+ L+PINR+YPL L++A Sbjct: 199 PNFSHRHVTVSTSGLVPMIRKLGEETPVKLAISLNATTDAQRDALMPINRRYPLAQLLEA 258 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 CR +P + N RRITFEYV+L G+NDS DA+ L ++++GIP K+NLIP+N PG Y Sbjct: 259 CRSFP-IRNGRRITFEYVLLGGVNDSLEDAVRLARLVRGIPTKVNLIPYNANPGLPYRAP 317 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 + +V F E + ++ +R RG DI AACGQL + Sbjct: 318 APERVVEFQETLAARNLTAVVRKNRGGDISAACGQLAA 355 >gi|90410870|ref|ZP_01218884.1| hypothetical protein P3TCK_14595 [Photobacterium profundum 3TCK] gi|90328083|gb|EAS44394.1| hypothetical protein P3TCK_14595 [Photobacterium profundum 3TCK] Length = 373 Score = 260 bits (664), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 143/336 (42%), Positives = 195/336 (58%), Gaps = 20/336 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI KWIY G DF M++I++++R L + I P + + + S DGT KW +R Sbjct: 29 FRADQIMKWIYQFGCDDFDQMTNINKKLREKLKRVAEIRAPYVSEAQHSVDGTIKWAMRV 88 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G ++ETVYIP+ R TLCVSSQVGC+L C+FC T Q RNL EI+ QV Sbjct: 89 ------GDQDVETVYIPDGDRATLCVSSQVGCALACTFCSTAQQGFNRNLRVSEIIGQVW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A +G + GR+ I+N+VMMGMGEPL N N+ +L I D +G Sbjct: 143 RAAKEIG-----------IEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDIGFG 191 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 SKRR+T+STSG V + ++ I V LAISLHA +++LR+ ++PIN ++ + +++ R Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTGNIDVALAISLHAPTDELRSQIMPINDRFNIATFLESVR 251 Query: 272 HYPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 Y SNA R+T EYV+L +ND A L +LK PAKINLIPFNP+PG Y Sbjct: 252 RYVEQSNANRGRVTVEYVLLDHVNDDMEHARQLAVLLKDTPAKINLIPFNPYPGSPYRKP 311 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F + + ++ +R RG DI AACGQL Sbjct: 312 SNSRIDRFMKTLMEYDFTVTVRKTRGDDIDAACGQL 347 >gi|28897379|ref|NP_796984.1| ribosomal RNA large subunit methyltransferase N [Vibrio parahaemolyticus RIMD 2210633] gi|153838534|ref|ZP_01991201.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus AQ3810] gi|260363554|ref|ZP_05776383.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus K5030] gi|260876339|ref|ZP_05888694.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus AN-5034] gi|260898610|ref|ZP_05907106.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus Peru-466] gi|260899290|ref|ZP_05907685.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus AQ4037] gi|81728415|sp|Q87S19|RLMN_VIBPA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|28805591|dbj|BAC58868.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|149748049|gb|EDM58908.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus AQ3810] gi|308086920|gb|EFO36615.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus Peru-466] gi|308092880|gb|EFO42575.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus AN-5034] gi|308106603|gb|EFO44143.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus AQ4037] gi|308113028|gb|EFO50568.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus K5030] Length = 375 Score = 260 bits (664), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 140/336 (41%), Positives = 196/336 (58%), Gaps = 20/336 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ KWIY G+ DF M++I++++R L I P + + + S DGT KW ++ Sbjct: 29 FRADQVMKWIYHFGVDDFDNMTNINKKLREKLQHKCEIKAPTVAEAQHSSDGTIKWAMKV 88 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G ++ETVYIPE+ R TLCVSSQVGC+L C FC T Q RNL EI+ QV Sbjct: 89 ------GDQDVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A +G + GR+ I+N+VMMGMGEPL N N+ +L I D +G Sbjct: 143 RAAREIG-----------LQKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFG 191 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 SKRR+T+STSG V + ++ +I V LAISLHA ++ LR+ ++PIN ++ ++ + + R Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASVR 251 Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 Y SNA R +T EYV+L +ND A L +++K P KINLIPFNP+PG Y Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDDMGHARELAELMKDTPCKINLIPFNPYPGSPYKKP 311 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F + + + ++ +R RG DI AACGQL Sbjct: 312 SNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQL 347 >gi|328472598|gb|EGF43461.1| ribosomal RNA large subunit methyltransferase N [Vibrio parahaemolyticus 10329] Length = 375 Score = 260 bits (664), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 140/336 (41%), Positives = 196/336 (58%), Gaps = 20/336 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ KWIY G+ DF M++I++++R L I P + + + S DGT KW ++ Sbjct: 29 FRADQVMKWIYHFGVDDFDNMTNINKKLREKLQHKCEIKAPTVAEAQHSSDGTIKWAMKV 88 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G ++ETVYIPE+ R TLCVSSQVGC+L C FC T Q RNL EI+ QV Sbjct: 89 ------GDQDVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A +G + GR+ I+N+VMMGMGEPL N N+ +L I D +G Sbjct: 143 RAAREIG-----------LQKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFG 191 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 SKRR+T+STSG V + ++ +I V LAISLHA ++ LR+ ++PIN ++ ++ + + R Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASVR 251 Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 Y SNA R +T EYV+L +ND A L +++K P KINLIPFNP+PG Y Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKETPCKINLIPFNPYPGSPYKKP 311 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F + + + ++ +R RG DI AACGQL Sbjct: 312 SNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQL 347 >gi|269962413|ref|ZP_06176763.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832909|gb|EEZ87018.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 375 Score = 260 bits (664), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 140/336 (41%), Positives = 195/336 (58%), Gaps = 20/336 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ KWIY G+ DF M++I++++R L I P + + + S DGT KW ++ Sbjct: 29 FRADQVMKWIYHFGVDDFDNMTNINKKLREKLQHKCEIKAPTVAEAQHSSDGTIKWAMKV 88 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G ++ETVYIPE R TLCVSSQVGC+L C FC T Q RNL EI+ QV Sbjct: 89 ------GDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A +G + GR+ I+N+VMMGMGEPL N N+ +L I D +G Sbjct: 143 RAAREIG-----------LQKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFG 191 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 SKRR+T+STSG V + ++ +I V LAISLHA ++ LR+ ++PIN ++ ++ + + R Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASVR 251 Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 Y SNA R +T EYV+L +ND A L +++K P KINLIPFNP+PG Y Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKETPCKINLIPFNPYPGSPYKKP 311 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F + + + ++ +R RG DI AACGQL Sbjct: 312 SNSRIDRFQKTLMQYDHTVTVRKTRGDDIDAACGQL 347 >gi|323499824|ref|ZP_08104783.1| ribosomal RNA large subunit methyltransferase N [Vibrio sinaloensis DSM 21326] gi|323315065|gb|EGA68117.1| ribosomal RNA large subunit methyltransferase N [Vibrio sinaloensis DSM 21326] Length = 374 Score = 260 bits (664), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 140/336 (41%), Positives = 197/336 (58%), Gaps = 20/336 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ KWIY G+ +F M++I++++R L + I+ P + + + S DGT KW ++ Sbjct: 29 FRADQVMKWIYHFGVDNFDNMTNINKKLREKLQRRCEIVAPTVAEAQHSSDGTIKWAMKV 88 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G ++ETVYIPE R TLCVSSQVGC+L C FC T Q RNL EI+ QV Sbjct: 89 ------GDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A +G + GR+ I+N+VMMGMGEPL N N+ +L + D +G Sbjct: 143 RAAREIG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLIPALELMLDDLGFG 191 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 SKRR+T+STSG V + ++ +I V LAISLHA ++ LR+ ++PIN ++ +E + + R Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSDIMPINDRWDIEDFLASVR 251 Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 Y SNA R +T EYV+L +ND A L ++LK P KINLIPFNP+PG Y Sbjct: 252 RYIQSSNANRGKVTVEYVLLDHVNDDMDHARELAELLKDTPCKINLIPFNPYPGSPYKKP 311 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F + + + ++ +R RG DI AACGQL Sbjct: 312 SNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQL 347 >gi|262402858|ref|ZP_06079419.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. RC586] gi|262351640|gb|EEZ00773.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. RC586] Length = 373 Score = 259 bits (663), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 143/336 (42%), Positives = 195/336 (58%), Gaps = 20/336 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ KWIY G DF M++I++++R L I P + + S DGT KW +R Sbjct: 29 FRAEQVMKWIYHFGCDDFDQMNNINKQLREKLKAKCEIRAPYVSAAQHSADGTIKWAMRV 88 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G ++ETVYIPE+ R TLCVSSQVGC+L C FC T Q RNL EI+ QV Sbjct: 89 ------GDQDVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A +G + GR+ I+N+VMMGMGEPL N N+ +L I D +G Sbjct: 143 RAAREIG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFG 191 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 SKRR+T+STSG V + ++ +I V LAISLHA +++LR+ ++PIN ++ ++ + R Sbjct: 192 LSKRRVTVSTSGVVSGLEQMIGQIDVALAISLHAPNDELRSQIMPINDRWNIQEFLATVR 251 Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 Y SNA R +T EYV+L +ND A L +++KG P KINLIPFNP+PG Y Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAELMKGTPCKINLIPFNPYPGSPYKKP 311 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F + + + ++ IR RG DI AACGQL Sbjct: 312 SNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQL 347 >gi|147675306|ref|YP_001216242.1| hypothetical protein VC0395_A0286 [Vibrio cholerae O395] gi|262168795|ref|ZP_06036490.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae RC27] gi|205829925|sp|A5F3F8|RLMN_VIBC3 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|146317189|gb|ABQ21728.1| conserved hypothetical protein [Vibrio cholerae O395] gi|227012581|gb|ACP08791.1| conserved hypothetical protein [Vibrio cholerae O395] gi|262022913|gb|EEY41619.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae RC27] Length = 373 Score = 259 bits (663), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 144/336 (42%), Positives = 194/336 (57%), Gaps = 20/336 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ KWIY G DF M++I++++R L I P + + + S DGT KW +R Sbjct: 29 FRAEQVMKWIYHFGCDDFDQMNNINKQLREKLKAKCEIRAPYVSEAQHSADGTIKWAMRV 88 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G ++ETVYIPE R TLCVSSQVGC+L C FC T Q RNL EI+ QV Sbjct: 89 ------GDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A +G + GR+ I+N+VMMGMGEPL N N+ +L I D +G Sbjct: 143 RAAREIG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFG 191 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 SKRR+T+STSG V + ++ +I V LAISLHA ++ LR+ ++PIN ++ +E ++ R Sbjct: 192 LSKRRVTVSTSGVVSGLEQMIGQIDVALAISLHAPNDKLRSEIMPINDRWNIEAFLEVVR 251 Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 Y SNA R +T EYV+L +ND A L ++LK P KINLIPFNP+PG Y Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAELLKRTPCKINLIPFNPYPGSPYKKP 311 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F + + + ++ IR RG DI AACGQL Sbjct: 312 SNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQL 347 >gi|261212143|ref|ZP_05926429.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. RC341] gi|260838751|gb|EEX65402.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. RC341] Length = 373 Score = 259 bits (662), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 143/336 (42%), Positives = 195/336 (58%), Gaps = 20/336 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ KWIY G DF M++I++++R L I P + + S DGT KW +R Sbjct: 29 FRAEQVMKWIYHFGCDDFDQMNNINKQLREKLKAKCEIRAPYVSAAQHSADGTIKWAMRV 88 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G ++ETVYIPE+ R TLCVSSQVGC+L C FC T Q RNL EI+ QV Sbjct: 89 ------GDQDVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A +G + GR+ I+N+VMMGMGEPL N N+ +L I D +G Sbjct: 143 RAAREIG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFG 191 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 SKRR+T+STSG V + ++ +I V LAISLHA +++LR+ ++PIN ++ ++ + R Sbjct: 192 LSKRRVTVSTSGVVSGLEQMIGQIDVALAISLHAPNDELRSQIMPINDRWNIQEFLATVR 251 Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 Y SNA R +T EYV+L +ND A L +++KG P KINLIPFNP+PG Y Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAELMKGTPCKINLIPFNPYPGSPYKKP 311 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F + + + ++ IR RG DI AACGQL Sbjct: 312 SNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQL 347 >gi|86145592|ref|ZP_01063922.1| hypothetical protein MED222_01522 [Vibrio sp. MED222] gi|218708638|ref|YP_002416259.1| hypothetical protein VS_0616 [Vibrio splendidus LGP32] gi|254807223|sp|B7VJT5|RLMN_VIBSL RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|85836563|gb|EAQ54689.1| hypothetical protein MED222_01522 [Vibrio sp. MED222] gi|218321657|emb|CAV17609.1| Predicted Fe-S-cluster redox enzyme [Vibrio splendidus LGP32] Length = 380 Score = 259 bits (662), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 140/336 (41%), Positives = 196/336 (58%), Gaps = 20/336 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ KWIY G+ DF+ M++I++++R L I+ P + + + S DGT KW + Sbjct: 29 FRAEQVMKWIYHFGVDDFEQMNNINKKLREKLLHRCEIVAPIVSEAQHSADGTIKWAMSV 88 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G ++ETVYIP+ R TLCVSSQVGC+L C FC T Q RNL EI+ Q+ Sbjct: 89 ------GDQDVETVYIPDGDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIVGQIW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A +G + GR+ I+N+VMMGMGEPL N N+ SL + D +G S Sbjct: 143 RAAREIG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLIPSLELMLDDLGFS 191 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 SKRR+T+STSG V + ++ + I V LAISLHA ++ LR+ ++PIN ++ ++ + + R Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTDNIDVALAISLHAPNDALRSQIMPINDRWDIQDFLASVR 251 Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 Y SNA R +T EYV+L +ND A L +++K P KINLIPFNP+PG Y Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKDTPCKINLIPFNPYPGSPYKKP 311 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F + + Y+ +R RG DI AACGQL Sbjct: 312 SNSRIDRFQKTLMEYNYTVTVRKTRGDDIDAACGQL 347 >gi|260771398|ref|ZP_05880323.1| ribosomal RNA large subunit methyltransferase N [Vibrio furnissii CIP 102972] gi|260613524|gb|EEX38718.1| ribosomal RNA large subunit methyltransferase N [Vibrio furnissii CIP 102972] gi|315180979|gb|ADT87893.1| predicted Fe-S-cluster redox enzyme [Vibrio furnissii NCTC 11218] Length = 373 Score = 259 bits (662), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 145/352 (41%), Positives = 202/352 (57%), Gaps = 22/352 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI KWIY G DF M++I++++R L + I P + + + S DGT KW +R Sbjct: 29 FRADQIMKWIYHFGCDDFDKMTNINKKLREQLKERCEIRAPYVSEAQHSSDGTIKWAMRV 88 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G ++ETVYIPE R TLCVSSQVGC+L C FC T Q RNL EI+ QV Sbjct: 89 ------GDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A +G + GR+ I+N+VMMGMGEPL N N+ +L I D +G Sbjct: 143 RAAREIG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFG 191 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 SKRR+T+STSG V + ++ +I V LAISLHA ++ LR+ ++PIN ++ ++ + + R Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTGQIDVALAISLHAPNDTLRSEIMPINDRWDIQDFLASVR 251 Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 Y SNA R +T EYV+L +ND A L +++K P KINLIPFNP+PG Y Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAQLMKDTPCKINLIPFNPYPGSPYKKP 311 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQ 381 I F + + + ++ +R RG DI AACGQL + I + R +M+ Sbjct: 312 SNSRIDRFQKTLMQYDHTVTVRKTRGDDIDAACGQL--VGDVIDRTKRTKMK 361 >gi|295698544|ref|YP_003603199.1| radical SAM enzyme, Cfr family [Candidatus Riesia pediculicola USDA] gi|291157215|gb|ADD79660.1| radical SAM enzyme, Cfr family [Candidatus Riesia pediculicola USDA] Length = 356 Score = 259 bits (662), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 143/341 (41%), Positives = 201/341 (58%), Gaps = 23/341 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ WIY +FQ M++ S+++R + F I+ P I ++KIS DGT KW +R Sbjct: 27 FRADQLTDWIYRHYCDNFQSMTNFSRDLRKKMESFFQILPPRIQEKKISLDGTIKWRMR- 85 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 IETV+IPE R TLC+SSQ+GC L C FC+ +K RNL EI+ QV Sbjct: 86 ----TDSEETIETVFIPEGRRKTLCISSQIGCPLKCRFCFVSKKKFRRNLKISEIVGQVW 141 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-------ISNIVMMGMGEPLCNFDNVKKSLSIAS 205 +A +L I SV K +NIV+MG GEPL NF N+ S+ I + Sbjct: 142 IAGKILRK----------EISSVFSKKRNHLLPFTNIVIMGTGEPLLNFRNILSSIRIIT 191 Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEM 265 S G +F +++I LST+G P I ++ E + LAISLHA +N +R+ ++PIN+KY ++ Sbjct: 192 SSHGFNFPEKKIVLSTAGVSPAIEKLLENTQIKLAISLHAPNNKIRDRIMPINKKYDIQS 251 Query: 266 LIDACRHYPGLSNA-RRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGC 324 ++D+ + + SN +RIT EY+ML+GIND +DA L ILK IP KINLIPFN G Sbjct: 252 ILDSIQKFQNHSNIFQRITIEYIMLRGINDEVQDAYQLADILKNIPVKINLIPFNSTAGI 311 Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 Y S+ I FSE +K+ + + +R +G DI A+CGQL Sbjct: 312 PYKRSNLLHIQQFSEILKKFRFVTTVRKTKGGDIQASCGQL 352 >gi|197118042|ref|YP_002138469.1| ribosomal RNA large subunit methyltransferase N [Geobacter bemidjiensis Bem] gi|197087402|gb|ACH38673.1| 23S rRNA (2-methyl-A2503)-methyltransferase [Geobacter bemidjiensis Bem] Length = 351 Score = 259 bits (662), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 140/337 (41%), Positives = 205/337 (60%), Gaps = 29/337 (8%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ--HFSIIYPEIVDEKISCDGTRKWL 89 R R QI+KW+Y F+ M+++S+E R +L + S + PE+V+ S DGTRK+L Sbjct: 25 RFRAKQIFKWLYQMDAGSFEEMTNVSKEFRVMLGEIAQISNLTPEVVE--ASEDGTRKYL 82 Query: 90 LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149 R + +E+V IP++ R TLC+SSQVGC++ C+FC TG+ L RNLT EI+ Sbjct: 83 FR-----LSDGSAVESVLIPDEGRNTLCISSQVGCAMGCAFCLTGSFGLSRNLTTAEIVN 137 Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209 QV + D P ++NIV MGMGEPL N V ++ I +D G Sbjct: 138 QVCAVKR---DQP----------------VNNIVFMGMGEPLANLKGVIPAVQILTDPDG 178 Query: 210 LSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 FS R++T+STSG VP +A +G V LA+SL+A ++++R+ ++P+NR YPL L+ A Sbjct: 179 FQFSTRKVTVSTSGLVPEMAELGRGCTVNLAVSLNATTDEVRSRIMPVNRTYPLAQLLAA 238 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 C+ +P L + R IT EYVM++ +NDS DA L++++ IP+K+NLIPFN GC++ C Sbjct: 239 CKAFP-LPSRRWITMEYVMIRDLNDSLEDAKRLVRLISNIPSKVNLIPFNEHEGCDFKCP 297 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 Q+ I F + + + R+ RG DI AACGQLK Sbjct: 298 TQESIDRFHKYLLDKNVTVITRSSRGSDISAACGQLK 334 >gi|124515329|gb|EAY56839.1| putative radical SAM family protein [Leptospirillum rubarum] Length = 379 Score = 259 bits (662), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 142/334 (42%), Positives = 201/334 (60%), Gaps = 9/334 (2%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93 R Q+ +WI+ + + +++ M ++ + R + + + P + DEK S DGTRK LL Sbjct: 29 RARQVAQWIFRQNVSEWERMKNLPGDDRRRWSDRWDLSLPIVRDEKRSRDGTRKLLLE-- 86 Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153 + G IE+V IP R TLCVSSQVGC + C FC T LVRNL+ EIL QV + Sbjct: 87 ---LSGGALIESVLIPRDDRATLCVSSQVGCGIGCRFCRTAEMGLVRNLSVSEILGQVRV 143 Query: 154 ARSLLGDFPGCEDIEGMVIPS-VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A LL + P D+ P+ +++++V MGMGEPL NFD++ +SL++ + G Sbjct: 144 ANRLLAEAP-VRDMSKETDPTPFLSRVNHLVFMGMGEPLANFDHLVRSLAVLTSPEGFGL 202 Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S RRIT+STSG I +G I V LA+SL A + +LR L+PI+R +P+ ++ ACR Sbjct: 203 SSRRITVSTSGLAGRIRDLGTSGIAVNLAVSLSAPTEELRENLMPISRHHPIRSILSACR 262 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 YP L N +RITFEYV+L G+ND A L ++L +K+NLIPFNP+PG Y D+ Sbjct: 263 AYP-LRNRQRITFEYVLLGGVNDGEGQARELARLLAPFRSKVNLIPFNPYPGSPYHRPDK 321 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + F E + G ++ +RT RG DIL ACGQL Sbjct: 322 DRVRRFQEILLAKGVTATLRTTRGEDILGACGQL 355 >gi|84387623|ref|ZP_00990640.1| hypothetical protein V12B01_09136 [Vibrio splendidus 12B01] gi|84377468|gb|EAP94334.1| hypothetical protein V12B01_09136 [Vibrio splendidus 12B01] Length = 380 Score = 259 bits (661), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 140/336 (41%), Positives = 196/336 (58%), Gaps = 20/336 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ KWIY G+ DF+ M++I++++R L I+ P + + + S DGT KW + Sbjct: 29 FRAEQVMKWIYHFGVDDFEQMNNINKKLREKLLHRCEIVAPIVSEAQHSADGTIKWAMSV 88 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G ++ETVYIP+ R TLCVSSQVGC+L C FC T Q RNL EI+ Q+ Sbjct: 89 ------GDQDVETVYIPDGDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIVGQIW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A +G + GR+ I+N+VMMGMGEPL N N+ SL + D +G S Sbjct: 143 RAAREIG-----------LEKDTGRRPITNVVMMGMGEPLLNMKNLIPSLELMLDDLGFS 191 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 SKRR+T+STSG V + ++ + I V LAISLHA ++ LR+ ++PIN ++ ++ + + R Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTDNIDVALAISLHAPNDALRSQIMPINDRWDIQDFLASVR 251 Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 Y SNA R +T EYV+L +ND A L +++K P KINLIPFNP+PG Y Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKETPCKINLIPFNPYPGSPYKKP 311 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F + + Y+ +R RG DI AACGQL Sbjct: 312 SNSRIDRFQKTLMEYNYTVTVRKTRGDDIDAACGQL 347 >gi|59711233|ref|YP_204009.1| hypothetical protein VF_0626 [Vibrio fischeri ES114] gi|75354452|sp|Q5E775|RLMN_VIBF1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|59479334|gb|AAW85121.1| predicted enzyme [Vibrio fischeri ES114] Length = 372 Score = 259 bits (661), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 141/336 (41%), Positives = 196/336 (58%), Gaps = 20/336 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ KW+Y G DF M++I++++R L I P + + + S DGT KW ++ Sbjct: 29 FRADQVMKWMYHFGCDDFDQMNNINKKLREKLKHKCEIRAPYVSEAQHSSDGTIKWAMKV 88 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G ++ETVYIP+ R TLCVSSQVGC+L C FC T Q RNL EI+ Q+ Sbjct: 89 ------GDQDVETVYIPDGDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIVGQIW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A +G + GR+ I+N+VMMGMGEPL N N+ +L I D +G + Sbjct: 143 RAAREIG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFA 191 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 SKRR+T+STSG V + ++ +I V LAISLHA +++LR+ ++PIN ++ ++ + + R Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPTDELRSQIMPINDRWDIDAFLASVR 251 Query: 272 HYPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 Y SNA R+T EYV+L +ND A L ++LK PAKINLIPFNP+PG Y Sbjct: 252 RYIASSNANRGRVTVEYVLLDHVNDDMDHARQLAELLKDTPAKINLIPFNPYPGSPYKKP 311 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F + + Y+ IR RG DI AACGQL Sbjct: 312 SNSRIDRFMKTLMEYDYTVTIRKTRGDDIDAACGQL 347 >gi|116787825|gb|ABK24655.1| unknown [Picea sitchensis] Length = 464 Score = 259 bits (661), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 152/358 (42%), Positives = 207/358 (57%), Gaps = 26/358 (7%) Query: 11 GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGI--RDFQGMSDISQEVRHLLNQHF 68 GM ELE + + M +WK +Y G+ + M +S++ R L + Sbjct: 107 GMTYHELEAWVQSLSYRAGQAMM----LWKCLYGNGMWAQHVDEMQALSKQFRATLEKTA 162 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLT 127 + D + DGTRK L +G + IETV IP E+ R TLCVSSQVGC++ Sbjct: 163 EFSVFSLKDVYSASDGTRKILFS-----LGDGLIIETVLIPCERGRTTLCVSSQVGCAMN 217 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FCYTG L RNLTA EI+ QV+ AR + G I+N+V MGM Sbjct: 218 CQFCYTGRMGLKRNLTAAEIVEQVVYARRHFTNEVG--------------PITNVVFMGM 263 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL NFDNV K+ I D GL FS R++T+STSG VP I R E +LA+SL+A + Sbjct: 264 GEPLHNFDNVLKAAEIMVDCHGLHFSPRKVTVSTSGLVPQIRRFIRESPCVLAVSLNATT 323 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 +++RN ++PINRKY L+ML+ R G + ++ FEYVML GINDS DA L+ +++ Sbjct: 324 DEVRNWIMPINRKYNLDMLLTMLREEIGQRHKFKVLFEYVMLLGINDSLDDARRLVNLVE 383 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 GIP KINLI FNP G ++ S Q+ ++ F + + +GY++ IR RG D +AACGQL Sbjct: 384 GIPCKINLISFNPHEGSSFIPSTQEQMLAFHKIVADAGYATFIRHSRGNDQMAACGQL 441 >gi|323491629|ref|ZP_08096808.1| ribosomal RNA large subunit methyltransferase N [Vibrio brasiliensis LMG 20546] gi|323314205|gb|EGA67290.1| ribosomal RNA large subunit methyltransferase N [Vibrio brasiliensis LMG 20546] Length = 375 Score = 259 bits (661), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 140/336 (41%), Positives = 196/336 (58%), Gaps = 20/336 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ KWIY G+ +F M++I++++R L I P + + + S DGT KW ++ Sbjct: 29 FRADQVMKWIYHFGVDNFDDMTNINKKLREKLQHRCEIKAPTVAEAQHSSDGTIKWAMKV 88 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G ++ETVYIPE+ R TLCVSSQVGC+L C FC T Q RNL EI+ QV Sbjct: 89 ------GDQDVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A +G + GR+ I+NIVMMGMGEPL N N+ +L I D +G Sbjct: 143 RAAREIG-----------LQKETGRRPITNIVMMGMGEPLLNMKNLIPALEIMLDDLGFG 191 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 SKRR+T+STSG V + ++ +I V LAISLHA ++ LR+ ++PIN ++ ++ + + R Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASVR 251 Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 Y SNA R +T EYV+L +ND A L +++K P KINLIPFNP+PG Y Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKDTPCKINLIPFNPYPGSPYKKP 311 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F + + + ++ +R RG DI AACGQL Sbjct: 312 SNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQL 347 >gi|209694315|ref|YP_002262243.1| hypothetical protein VSAL_I0726 [Aliivibrio salmonicida LFI1238] gi|254807148|sp|B6EGY4|RLMN_ALISL RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|208008266|emb|CAQ78411.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238] Length = 383 Score = 259 bits (661), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 143/336 (42%), Positives = 195/336 (58%), Gaps = 20/336 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI KW+Y G DF M++I++++R L Q I P + + + S DGT KW ++ Sbjct: 29 FRADQIMKWMYHFGCDDFDQMNNINKKLREKLKQKCEIRAPYVSEAQHSVDGTIKWAMKV 88 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G ++ETVYIP+ R TLCVSSQVGC+L C+FC T Q RNL EI+ Q+ Sbjct: 89 ------GDQDVETVYIPDGDRATLCVSSQVGCALACTFCSTAQQGFNRNLKVSEIVGQIW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A +G + GR+ I+N+VMMGMGEPL N N+ SL I D +G Sbjct: 143 RAAREIG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLMPSLDIMLDDLGFG 191 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 SKRR+T+STSG V + ++ ++ V LAISLHA ++ LR+ ++PIN ++ +E + R Sbjct: 192 LSKRRVTVSTSGVVSGLEQMIGKVDVALAISLHAPTDKLRSEIMPINDRWNIEAFLACVR 251 Query: 272 HYPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 Y SNA R+T EYV+L IND A L ++LK PAKINLIPFNP+PG Y Sbjct: 252 EYIASSNANRGRVTVEYVLLDHINDDMDHARQLAELLKDTPAKINLIPFNPYPGSPYKKP 311 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F + + ++ +R RG DI AACGQL Sbjct: 312 SNSRIDRFMKTLMEYDFTVTVRRTRGDDIDAACGQL 347 >gi|197336065|ref|YP_002155383.1| radical SAM enzyme, Cfr family [Vibrio fischeri MJ11] gi|254807222|sp|B5FAW9|RLMN_VIBFM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|197317555|gb|ACH67002.1| radical SAM enzyme, Cfr family [Vibrio fischeri MJ11] Length = 372 Score = 259 bits (661), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 141/336 (41%), Positives = 196/336 (58%), Gaps = 20/336 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ KW+Y G DF M++I++++R L I P + + + S DGT KW ++ Sbjct: 29 FRADQVMKWMYHFGCDDFDQMNNINKKLREKLKNKCEIRAPYVSEAQHSSDGTIKWAMKV 88 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G ++ETVYIP+ R TLCVSSQVGC+L C FC T Q RNL EI+ Q+ Sbjct: 89 ------GDQDVETVYIPDGDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIVGQIW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A +G + GR+ I+N+VMMGMGEPL N N+ +L I D +G + Sbjct: 143 RAAREIG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFA 191 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 SKRR+T+STSG V + ++ +I V LAISLHA +++LR+ ++PIN ++ ++ + + R Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPTDELRSQIMPINDRWDIDAFLASVR 251 Query: 272 HYPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 Y SNA R+T EYV+L +ND A L ++LK PAKINLIPFNP+PG Y Sbjct: 252 RYIASSNANRGRVTVEYVLLDHVNDDMDHARQLAELLKDTPAKINLIPFNPYPGSPYKKP 311 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F + + Y+ IR RG DI AACGQL Sbjct: 312 SNSRIDRFMKTLMEYDYTVTIRKTRGDDIDAACGQL 347 >gi|206601630|gb|EDZ38113.1| Putative radical SAM family protein [Leptospirillum sp. Group II '5-way CG'] Length = 379 Score = 258 bits (660), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 142/334 (42%), Positives = 203/334 (60%), Gaps = 9/334 (2%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93 R QI +WI+ + +++ M+++ E R ++ + + P + DEK S DGTRK+LL Sbjct: 29 RARQIAQWIFRQNASEWERMNNLPGEDRRRWSEIWDLSLPIVRDEKRSRDGTRKFLLELS 88 Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153 + IE+V IP R TLCVSSQVGC + C FC T L+RNL+ EIL QV + Sbjct: 89 DGAL-----IESVLIPRDDRATLCVSSQVGCGIGCRFCRTAEMGLIRNLSVSEILGQVRV 143 Query: 154 ARSLLGDFPGCEDIEGMVIPS-VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A LL + P D+ P+ + +++++V MGMGEPL NFD++ +SL++ + G Sbjct: 144 ANRLLAESP-VRDMSKETEPAPLLSRVNHLVFMGMGEPLANFDHLVRSLAVLTSPEGFGL 202 Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S RRIT+STSG I +G I V LA+SL A + +LR L+PI+R +P+ ++ ACR Sbjct: 203 SSRRITVSTSGLAGRIRDLGTSGIAVNLAVSLSAPTEELRENLMPISRHHPIRSILSACR 262 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 YP L N +RITFEYV+L G+ND A L ++L +K+NLIPFNP+PG Y D+ Sbjct: 263 AYP-LRNRQRITFEYVLLGGVNDGEGQARELARLLAPFRSKVNLIPFNPYPGSPYHRPDK 321 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + F E + G ++ +RT RG DIL ACGQL Sbjct: 322 DRVRRFQEILLAKGVTATLRTTRGEDILGACGQL 355 >gi|254506728|ref|ZP_05118868.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus 16] gi|219550309|gb|EED27294.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus 16] Length = 374 Score = 258 bits (660), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 140/336 (41%), Positives = 195/336 (58%), Gaps = 20/336 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ KWIY G+ +F M++I++++R L I P + + + S DGT KW ++ Sbjct: 29 FRADQVMKWIYHFGVDNFDNMTNINKKLREKLQHRCEIKAPTVAEAQHSSDGTIKWAMKV 88 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G ++ETVYIPE R TLCVSSQVGC+L C FC T Q RNL EI+ QV Sbjct: 89 ------GDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A +G + GR+ I+N+VMMGMGEPL N N+ +L I D +G Sbjct: 143 RAAREIG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFG 191 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 SKRR+T+STSG V + ++ +I V LAISLHA ++ LR+ ++PIN ++ ++ + + R Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASVR 251 Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 Y SNA R +T EYV+L +ND A L +++K P KINLIPFNP+PG Y Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKDTPCKINLIPFNPYPGSPYKKP 311 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F + + + ++ IR RG DI AACGQL Sbjct: 312 SNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQL 347 >gi|91225141|ref|ZP_01260363.1| hypothetical protein V12G01_12975 [Vibrio alginolyticus 12G01] gi|91190084|gb|EAS76355.1| hypothetical protein V12G01_12975 [Vibrio alginolyticus 12G01] Length = 375 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 139/336 (41%), Positives = 196/336 (58%), Gaps = 20/336 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ KWIY G+ DF+ M++I++++R L I P + + + S DGT KW ++ Sbjct: 29 FRADQVMKWIYHFGVDDFEKMTNINKKLREKLLHKCEIKAPTVAEAQHSSDGTIKWAMKV 88 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G ++ETVYIPE R TLCVSSQVGC+L C FC T Q RNL EI+ QV Sbjct: 89 ------GDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A +G + GR+ I+N+VMMGMGEPL N N+ +L + D +G Sbjct: 143 RAAREIG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLIPALELMLDDLGFG 191 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 SKRR+T+STSG V + ++ +I V LAISLHA ++ LR+ ++PIN ++ ++ + + R Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASVR 251 Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 Y SNA R +T EYV+L +ND A L +++K P KINLIPFNP+PG Y Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDEMDHARELAELMKDTPCKINLIPFNPYPGSPYKKP 311 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F + + + ++ +R RG DI AACGQL Sbjct: 312 SNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQL 347 >gi|71900902|ref|ZP_00683017.1| Conserved hypothetical protein 48 [Xylella fastidiosa Ann-1] gi|71729314|gb|EAO31430.1| Conserved hypothetical protein 48 [Xylella fastidiosa Ann-1] Length = 309 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 138/295 (46%), Positives = 182/295 (61%), Gaps = 23/295 (7%) Query: 81 SCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVR 140 S DGT KWLL A IETVYIP+K RGTLCVSSQ+GC L C+FC T TQ R Sbjct: 2 SADGTHKWLL---AMGTDRKNAIETVYIPDKGRGTLCVSSQIGCGLNCTFCSTATQGFNR 58 Query: 141 NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKS 200 NLT EI+ QV +A LG+ +P R+++N+VMMGMGEPL NFDNV ++ Sbjct: 59 NLTTAEIIGQVWVAARHLGN-----------VPHQRRRLTNVVMMGMGEPLMNFDNVVRA 107 Query: 201 LSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260 +S+ D +G S +R+TLSTSG VP I R+ E V LA+SLHA ++ LR LVP+N+K Sbjct: 108 MSVMRDDLGYGLSNKRVTLSTSGLVPMIDRLSTESDVSLAVSLHAPNDKLREQLVPLNKK 167 Query: 261 YPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNLIKILKGI--------PA 311 YP+ L+ +C Y ++ R +TFEY ++KG+ND A L K+++ A Sbjct: 168 YPIVELMASCERYLSVNRKRDSVTFEYTLMKGVNDKQEHAHELAKLMRQFDCAMQVKGAA 227 Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 K+NLIPFNP+PG Y S + DI F + + + + +R RG DI AACGQLK Sbjct: 228 KVNLIPFNPFPGTCYERSTEVDIRAFQKILLDAQILAMVRRTRGDDIDAACGQLK 282 >gi|332530539|ref|ZP_08406478.1| radical sam enzyme, cfr family protein [Hylemonella gracilis ATCC 19624] gi|332040014|gb|EGI76401.1| radical sam enzyme, cfr family protein [Hylemonella gracilis ATCC 19624] Length = 404 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 147/353 (41%), Positives = 204/353 (57%), Gaps = 36/353 (10%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R R +Q+++WI+ RG DF MSD+++ +R L I ++ ++ S DGT KWL Sbjct: 25 RFRATQLFRWIHQRGASDFDQMSDLAKSLRAKLKTAAHIQGLPVITQQESADGTIKWLFD 84 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 +G +E VYIPE RGTLCVSSQ GC++ C FC TG Q RNL+ EI+ Q+ Sbjct: 85 -----VGDGNAVEAVYIPEDDRGTLCVSSQAGCAVGCRFCSTGHQGFSRNLSTGEIVAQL 139 Query: 152 LLARSLLGDF------PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS 205 A L PG ED R I+N+VMMGMGEPL N+ + +L + Sbjct: 140 WHAEHFLRARRQHPLQPG-ED---------HRVITNVVMMGMGEPLQNYAALVPALRVML 189 Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEM 265 D G S+RR+T+STSG VP + R+ E+ V LA+SLHA ++ LR+ LVP+NRKYP+ Sbjct: 190 DDHGYGLSRRRLTVSTSGVVPMMERLSEDCPVALAVSLHAPNDGLRDGLVPLNRKYPIHE 249 Query: 266 LIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILK-----------GIPAK 312 L+D C Y L++A R ITFEY ML G+ND P A L+ +++ G+ K Sbjct: 250 LLDTCLSY--LAHAPRDFITFEYCMLDGVNDQPEHARELLALMQVFRQRAADLGHGVGCK 307 Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +NLIPFNP+P S + + F++ + +G + +R RG DI AACGQL Sbjct: 308 LNLIPFNPFPESGLKRSPGERVQAFAKILLEAGIVTTVRKTRGDDIDAACGQL 360 >gi|260776635|ref|ZP_05885530.1| ribosomal RNA large subunit methyltransferase N [Vibrio coralliilyticus ATCC BAA-450] gi|260607858|gb|EEX34123.1| ribosomal RNA large subunit methyltransferase N [Vibrio coralliilyticus ATCC BAA-450] Length = 374 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 139/336 (41%), Positives = 196/336 (58%), Gaps = 20/336 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ KWIY G+ DF+ M++I++++R L I P + + + S DGT KW ++ Sbjct: 29 FRAEQVMKWIYHFGVDDFEKMTNINKKLREKLIHRCEIKAPVVAEAQHSSDGTIKWAMKV 88 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G ++ETVYIPE R TLCVSSQVGC+L C FC T Q RNL EI+ QV Sbjct: 89 ------GDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A +G + GR+ I+N+VMMGMGEPL N N+ +L + D +G Sbjct: 143 RAAREIG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLIPALELMLDDLGFG 191 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 SKRR+T+STSG V + ++ +I V LAISLHA ++ LR+ ++PIN ++ ++ + + R Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTGQIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASVR 251 Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 Y SNA R +T EYV+L +ND A L +++K P KINLIPFNP+PG Y Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKDTPCKINLIPFNPYPGSPYKKP 311 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F + + + ++ +R RG DI AACGQL Sbjct: 312 SNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQL 347 >gi|254228668|ref|ZP_04922092.1| radical SAM enzyme, Cfr family [Vibrio sp. Ex25] gi|262395120|ref|YP_003286974.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. Ex25] gi|151938847|gb|EDN57681.1| radical SAM enzyme, Cfr family [Vibrio sp. Ex25] gi|262338714|gb|ACY52509.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. Ex25] Length = 375 Score = 256 bits (654), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 139/336 (41%), Positives = 195/336 (58%), Gaps = 20/336 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ KWIY G+ DF+ M++I++++R L I P + + + S DGT KW + Sbjct: 29 FRADQVMKWIYHFGVDDFEKMTNINKKLREKLLHKCEIKAPTVAEAQHSSDGTIKWAMNV 88 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G ++ETVYIPE R TLCVSSQVGC+L C FC T Q RNL EI+ QV Sbjct: 89 ------GDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A +G + GR+ I+N+VMMGMGEPL N N+ +L + D +G Sbjct: 143 RAAREIG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLIPALELMLDDLGFG 191 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 SKRR+T+STSG V + ++ +I V LAISLHA ++ LR+ ++PIN ++ ++ + + R Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASVR 251 Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 Y SNA R +T EYV+L +ND A L +++K P KINLIPFNP+PG Y Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKDTPCKINLIPFNPYPGSPYKKP 311 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F + + + ++ +R RG DI AACGQL Sbjct: 312 SNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQL 347 >gi|269965168|ref|ZP_06179302.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269830154|gb|EEZ84381.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 375 Score = 256 bits (654), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 139/336 (41%), Positives = 196/336 (58%), Gaps = 20/336 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ KWIY G+ DF+ M++I++++R L I P + + + S DGT KW ++ Sbjct: 29 FRADQVMKWIYHFGVDDFEKMTNINKKLREKLLYKCEIKAPTVAEAQHSSDGTIKWAMKV 88 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G ++ETVYIPE R TLCVSSQVGC+L C FC T Q RNL EI+ QV Sbjct: 89 ------GDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A +G + GR+ I+N+VMMGMGEPL N N+ +L + D +G Sbjct: 143 RAAREIG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLIPALELMLDDLGFG 191 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 SKRR+T+STSG V + ++ +I V LAISLHA ++ LR+ ++PIN ++ ++ + + R Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASVR 251 Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 Y SNA R +T EYV+L +ND A L +++K P KINLIPFNP+PG Y Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKDTPCKINLIPFNPYPGSPYKKP 311 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F + + + ++ +R RG DI AACGQL Sbjct: 312 SNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQL 347 >gi|268678701|ref|YP_003303132.1| radical SAM enzyme, Cfr family [Sulfurospirillum deleyianum DSM 6946] gi|268616732|gb|ACZ11097.1| radical SAM enzyme, Cfr family [Sulfurospirillum deleyianum DSM 6946] Length = 358 Score = 256 bits (653), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 146/382 (38%), Positives = 221/382 (57%), Gaps = 42/382 (10%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++KE++ + +EEL E + R QI++W+Y + + F M ++ +E++ Sbjct: 1 MEKENIFDLSKEELSEVI--------KPAFRAKQIYQWLYQKYVTSFDEMKNLPKELKEQ 52 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK------------ 111 LN+ + + IV + SCDG++K+L + +E V +P K Sbjct: 53 LNETYYLDPLRIVTIEESCDGSKKYLF-----ALKDNQTVEAVLLPMKQEQVDEEGKLVH 107 Query: 112 -SRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 +R T+C+SSQVGC + C+FC TG RNLTA EI QVL+ + D E+ Sbjct: 108 HARYTICISSQVGCKIGCAFCLTGKSGFKRNLTAGEITTQVLMIKR---DNAIAEN---- 160 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230 R++ NIV MGMGEPL N NV K++ I SD GLS S RR T+STSG I + Sbjct: 161 ------RRV-NIVYMGMGEPLDNLTNVSKAVRIFSDLDGLSISPRRQTISTSGLSSQIEK 213 Query: 231 VGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 +G+ ++G++LAISLHAV +DLR L+PIN+ Y +E +++A R +P + +R+ FEY+++ Sbjct: 214 LGKMDLGILLAISLHAVDDDLRQKLMPINKAYNIESIMNAVRGFP-IDARKRVMFEYLVM 272 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349 KG+ND + A L+K+L GI AK+NLI FNP G ++ KD++ F + + G Sbjct: 273 KGVNDDQKSAKKLVKLLHGIKAKVNLIYFNPHAGSDFDRPSTKDMIAFQQYLVDHGVLCT 332 Query: 350 IRTPRGLDILAACGQLKSLSKR 371 IR +GLDI AACGQLK ++ Sbjct: 333 IRQSKGLDISAACGQLKDKEQK 354 >gi|301057688|ref|ZP_07198761.1| 23S rRNA m2A2503 methyltransferase [delta proteobacterium NaphS2] gi|300448149|gb|EFK11841.1| 23S rRNA m2A2503 methyltransferase [delta proteobacterium NaphS2] Length = 346 Score = 256 bits (653), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 148/362 (40%), Positives = 208/362 (57%), Gaps = 25/362 (6%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 L G+ E+E+ + G+ R QI WI R + F M ++ +++R LL + Sbjct: 5 DLKGLSAAEMEKWAVDNGMEA----YRGRQIRHWILTRFAKSFDEMDNLPKKLRSLLKEK 60 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 + + S DGTRK+L + + IETV IPE+ TLCVSSQVGC++ Sbjct: 61 AHLSSLRELKAIQSEDGTRKYLYQ-----LQDGHSIETVLIPERDHLTLCVSSQVGCAMG 115 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC TG Q +RNL EI+ QV+ + L FP ++ NIV+MGM Sbjct: 116 CVFCATGKQGFIRNLKPGEIIEQVIRTKQSLA-FPD--------------RLRNIVLMGM 160 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL N+D V K+L D G++FS R++TLST G VP I ++ ++I + LA+SL+ Sbjct: 161 GEPLANYDAVIKALRNIIDPDGMNFSHRKVTLSTCGLVPEIKKLAKDITINLAVSLNGAD 220 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 N+ R+ L+PINRKYPLE LI+AC +P L N R ITFEY+++K ND RDA NL ++L Sbjct: 221 NETRSRLMPINRKYPLEALIEACSSFP-LPNRRMITFEYILIKDENDRDRDAHNLCRLLS 279 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 G+ AKINLI N P + + ++ F E + +++ IR +G DILAACGQLK Sbjct: 280 GLRAKINLIQLNAAPDSPFSIPSLEKVLHFQEILTDRHFTAIIRKSKGRDILAACGQLKG 339 Query: 368 LS 369 S Sbjct: 340 TS 341 >gi|54307955|ref|YP_128975.1| hypothetical protein PBPRA0760 [Photobacterium profundum SS9] gi|81615490|sp|Q6LU52|RLMN_PHOPR RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|46912381|emb|CAG19173.1| Conserved hypothetical protein [Photobacterium profundum SS9] Length = 373 Score = 256 bits (653), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 147/365 (40%), Positives = 201/365 (55%), Gaps = 31/365 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 L ++ L EEL E R QI KWIY G DF M++I++++R Sbjct: 11 LDRKGLRTYFAEELNEKAF-----------RADQIMKWIYQFGCDDFDQMTNINKKLREK 59 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L + I P + + S DGT KW +R G ++ETVYIP+ R TLCVSSQVG Sbjct: 60 LKRVAEIRAPYVSQAQHSVDGTIKWAMRV------GDQDVETVYIPDGDRATLCVSSQVG 113 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK-ISNI 182 C+L C+FC T Q RNL EI+ QV A +G + GR+ I+N+ Sbjct: 114 CALACTFCSTAQQGFNRNLRVSEIIGQVWRAAKEIG-----------IEKDTGRRPITNV 162 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ I V LAIS Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDIGFGLSKRRVTVSTSGVVSGLDQMTGNIDVALAIS 222 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDAL 300 LHA +++LR+ ++PIN ++ + +++ Y SNA R+T EY++L +ND A Sbjct: 223 LHAPTDELRSQIMPINDRFNIATFLESVSRYIEQSNANRGRVTVEYILLDHVNDDMEHAR 282 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L +LK PAKINLIPFNP+PG Y I F + + ++ +R RG DI A Sbjct: 283 QLAVLLKDTPAKINLIPFNPYPGSPYRKPSNSRIDRFMKTLMEYDFTVTVRKTRGDDIDA 342 Query: 361 ACGQL 365 ACGQL Sbjct: 343 ACGQL 347 >gi|312884301|ref|ZP_07744010.1| ribosomal RNA large subunit methyltransferase N [Vibrio caribbenthicus ATCC BAA-2122] gi|309368074|gb|EFP95617.1| ribosomal RNA large subunit methyltransferase N [Vibrio caribbenthicus ATCC BAA-2122] Length = 375 Score = 256 bits (653), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 137/336 (40%), Positives = 195/336 (58%), Gaps = 20/336 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ KWIY G+ +F M++I++++R L Q ++ P + + + S DGT KW ++ Sbjct: 29 FRADQVMKWIYHFGVDNFDNMTNINKKLREKLQQRCTVTAPTVAEAQHSSDGTIKWAMKV 88 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G ++ETVYIPE R TLC+SSQVGC+L C FC T Q RNL EI+ Q+ Sbjct: 89 ------GDQDVETVYIPEDDRATLCISSQVGCALECKFCSTAQQGFNRNLKVSEIIGQLW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A +G + GR+ I+N+VMMGMGEPL N N+ +L + D + Sbjct: 143 RAAREIG-----------LEKETGRRPITNVVMMGMGEPLLNMKNLIPALELMLDDLAFG 191 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 SKRR+T+STSG V + ++ +I V LAISLHA ++ LR+ ++PIN ++ ++ + + R Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDALRSEIMPINDRWNIDDFLASVR 251 Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 Y SNA R +T EYV+L +ND A L LK P KINLIPFNP+PG Y Sbjct: 252 RYIQSSNANRGKVTIEYVLLDHVNDDMDHARELSHTLKDTPCKINLIPFNPYPGSPYKKP 311 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F + + + G++ +R RG DI AACGQL Sbjct: 312 SNSRIDRFQKTLMQLGHTVTVRKTRGDDIDAACGQL 347 >gi|224370186|ref|YP_002604350.1| putative SAM-dependent methyltransferase [Desulfobacterium autotrophicum HRM2] gi|223692903|gb|ACN16186.1| putative SAM-dependent methyltransferase [Desulfobacterium autotrophicum HRM2] Length = 345 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 136/336 (40%), Positives = 201/336 (59%), Gaps = 19/336 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q++KW+Y+R + F M+DI +++R L ++F++ +IS DGT K L R Sbjct: 24 FRGGQVFKWLYLRQAQTFDEMTDIGKDLRQRLKENFTLSAMVFDRSEISRDGTEKLLFR- 82 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + IE V IPEK TLC+SSQ GC+ C FC T RNLT EI+ Q+ Sbjct: 83 ----LHDNAYIEAVLIPEKDHFTLCISSQAGCAQGCKFCLTAKGGFTRNLTTGEIIGQIR 138 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS-MGLS 211 A+++L R +SNIV MGMGEPL N+D V ++LSI +DS GL Sbjct: 139 TAKTVLAK------------RKAQRPLSNIVFMGMGEPLANYDTVVRALSIMTDSDYGLK 186 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S RRITLST G VP I R+G + V LA+SL+A +++ R++L+PINR+YP+ L+ AC Sbjct: 187 LSSRRITLSTCGLVPEILRLGNDTEVNLAVSLNATTDETRSMLMPINRRYPMHELLKACT 246 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 ++ + ++ITFEY+++K +ND+ DA LI +L I AK+NLIPFN ++ + Sbjct: 247 NFQ-MKPRKKITFEYILIKNVNDTMDDAKRLITLLLPIRAKVNLIPFNEHDQSDFKRPSK 305 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 + I+ F + + ++ +R +G DI AACGQL++ Sbjct: 306 ESILAFLQMLLDHNLTAMVRKSKGDDISAACGQLRA 341 >gi|261252176|ref|ZP_05944749.1| ribosomal RNA large subunit methyltransferase N [Vibrio orientalis CIP 102891] gi|260935567|gb|EEX91556.1| ribosomal RNA large subunit methyltransferase N [Vibrio orientalis CIP 102891] Length = 374 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 139/336 (41%), Positives = 195/336 (58%), Gaps = 20/336 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ KWIY G+ +F M++I++++R L I P + + + S DGT KW ++ Sbjct: 29 FRADQVMKWIYHFGVDNFDNMTNINKKLREKLLHRCEIKAPVVAEAQHSSDGTIKWAMKV 88 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G ++ETVYIPE R TLCVSSQVGC+L C FC T Q RNL EI+ QV Sbjct: 89 ------GDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVW 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 A +G + GR+ I+N+VMMGMGEPL N N+ +L I D +G Sbjct: 143 RAAREIG-----------LQKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFG 191 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 SKRR+T+STSG V + ++ +I V LAISLHA +++LR+ ++PIN ++ ++ + + R Sbjct: 192 LSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDELRSQIMPINDRWDIQDFLASVR 251 Query: 272 HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 Y SNA R +T EYV+L +ND A L ++K P KINLIPFNP+PG Y Sbjct: 252 RYIASSNANRGKVTVEYVLLDHVNDDMDHARELAVLMKDTPCKINLIPFNPYPGSPYKKP 311 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F + + + ++ +R RG DI AACGQL Sbjct: 312 SNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQL 347 >gi|114566753|ref|YP_753907.1| hypothetical protein Swol_1227 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318220|sp|Q0AXL8|RLMN_SYNWW RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|114337688|gb|ABI68536.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 357 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 147/376 (39%), Positives = 222/376 (59%), Gaps = 24/376 (6%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN ++K+ L+G+ ++EE LL + P R R Q++KWIY + F MSD+ + + Sbjct: 1 MNSIEKKQLLGLDLNQMEEFLLGLEEP----RFRGRQVYKWIYQKECSSFYEMSDLPRSL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE----KSRGTL 116 R L++ + P ++ +++ DG+RK+L+ + +IE V +P+ KS TL Sbjct: 57 RKKLDEKARVSIPRVLKQRVGKDGSRKFLMELDDK-----KKIECVLLPQSRDKKSSYTL 111 Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176 C+S+QVGC + CSFC TG RNL A EI+ Q L ++ +++ + Sbjct: 112 CLSTQVGCPIACSFCATGQSGFQRNLKAFEIIGQYLGSK---------KELSKRLKSPRA 162 Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-I 235 ISN+V MGMGEPL N+D V KS+ + +D G++ +RRIT+STSG V I ++ +E I Sbjct: 163 ELISNVVYMGMGEPLLNYDEVIKSVHMLNDPRGINLGQRRITISTSGEVAGIKKLAQENI 222 Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 + LAISLHA N LR+ L+P+NRKYPLE+L A Y + RR+TFEY++L +N S Sbjct: 223 QLTLAISLHACDNSLRDQLIPLNRKYPLEVLFPAIEDYIAFT-GRRVTFEYLLLDEVNMS 281 Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 DA ++K+LK + A +NLIP+N G + + I F + ++ G + IR RG Sbjct: 282 RNDANKMVKLLKPLLANLNLIPYNEIEGLPFKKPETAKIWQFYQWLQDGGLNVSIREERG 341 Query: 356 LDILAACGQLKSLSKR 371 DI AACGQL+S +R Sbjct: 342 SDINAACGQLRSDYRR 357 >gi|297519092|ref|ZP_06937478.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli OP50] Length = 330 Score = 254 bits (649), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 144/334 (43%), Positives = 194/334 (58%), Gaps = 22/334 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + G +ETVYIPE R TLCVSSQVGC+ Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGCA 126 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + G R I+N+VMM Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPITNVVMM 176 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTF 337 ++LK P KINLIP+NP+PG Y S I F Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRF 330 >gi|118444223|ref|YP_878314.1| ribosomal RNA large subunit methyltransferase N [Clostridium novyi NT] gi|205829738|sp|A0Q112|RLMN_CLONN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|118134679|gb|ABK61723.1| radical SAM enzyme, Cfr family [Clostridium novyi NT] Length = 343 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 141/337 (41%), Positives = 200/337 (59%), Gaps = 25/337 (7%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKIS-CDGTRKWLL 90 + R QI++WIY + + +F MS+IS+ + L ++F I P +V + +S DGT K+L Sbjct: 23 KFRAKQIFQWIYKKAVFNFDDMSNISKSTKEKLKENFYIQIPNVVKKYVSNIDGTEKFLF 82 Query: 91 RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150 + I IE+V + K ++CVS+Q+GC + C FC + +VRNLT+ EI+ Q Sbjct: 83 EYEDGNI-----IESVVMKYKHGNSICVSTQIGCRMGCKFCASTVDGVVRNLTSGEIIAQ 137 Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210 VL A+ + D +ISN+V+MG GEPL N+DNV K L + +D L Sbjct: 138 VLKAQKEICD-----------------RISNVVLMGSGEPLDNYDNVIKFLKLINDEDAL 180 Query: 211 SFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 + +R ITLST G VP I + ++ + + LAISLHA +N++R ++PI KY LE L+DA Sbjct: 181 NIGQRHITLSTCGIVPKIKELADQKMQITLAISLHAPNNEIRKSMMPIANKYTLEELLDA 240 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 CR+Y +N RRITFEY ++KG+NDS +A LIKI KG+ INLIP N Y S Sbjct: 241 CRYYYRTTN-RRITFEYALVKGVNDSRENAEELIKISKGMLCHINLIPVNEIKENNYERS 299 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 KDI F E + + G + IR G DI ACGQL+ Sbjct: 300 KSKDIEEFKETLIKHGIETTIRREMGSDINGACGQLR 336 >gi|297621155|ref|YP_003709292.1| Radical SAM superfamily protein [Waddlia chondrophila WSU 86-1044] gi|297376456|gb|ADI38286.1| Radical SAM superfamily protein [Waddlia chondrophila WSU 86-1044] Length = 362 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 143/363 (39%), Positives = 202/363 (55%), Gaps = 26/363 (7%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 S + REE ++ G+P R +SQI +WIY +G+ D S++S + R L Sbjct: 3 SAFDLSREEWQKWAETNGLP----RFVSSQILQWIYEKGVVDPAQFSNLSLKARKFLASQ 58 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F P I +S D + K+LLR + E V +P +SR TLC+SSQVGC + Sbjct: 59 FKWELPAIHSHLVSVDQSEKFLLRTSDHQL-----FEMVLMPYESRITLCISSQVGCRIG 113 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C+FC TG L RNLT+ EIL Q+LLA + G+KI+NIV MGM Sbjct: 114 CTFCQTGKLGLQRNLTSGEILSQILLANQSMN----------------GKKITNIVFMGM 157 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL N+D V K+ + D + S R+T+STSG VP I ++G+++ V LAISLH Sbjct: 158 GEPLDNYDEVLKACRLMVDPKAIGLSMHRVTVSTSGLVPYIEKLGQDLPVRLAISLHQAD 217 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 ++ R+ ++P+NR+YPL L A + YP ITFEYVM++G ND DA L+K + Sbjct: 218 DEKRSRMMPVNRRYPLSELKKALQQYPA-PKRYGITFEYVMIEGENDRIEDAKKLVKFVS 276 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 G+ AK+NLIP N +PG E S + +F + +P+R RG DI CGQL + Sbjct: 277 GLKAKVNLIPINHFPGLEMKASAADRLKSFQSYLAERSIPAPVRYSRGQDISGGCGQLAA 336 Query: 368 LSK 370 ++ Sbjct: 337 KTQ 339 >gi|290980807|ref|XP_002673123.1| predicted protein [Naegleria gruberi] gi|284086704|gb|EFC40379.1| predicted protein [Naegleria gruberi] Length = 482 Score = 252 bits (644), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 160/421 (38%), Positives = 229/421 (54%), Gaps = 62/421 (14%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 ++SL+G+ + E++E L K P R ++I+K+IY G R F ++ +++ R L+ Sbjct: 31 RKSLMGLNKTEMKEILEKTH-PHVASSFRLNEIYKFIYKFGARKFDDITVLTKSDRQSLS 89 Query: 66 QHFSIIYPEIVDEKISCD---GTRKWLLRFPARCIGGPV--------------------- 101 + +SI ++E+I TRK+L F PV Sbjct: 90 ELYSIDILGNIEEEIKSKKDKHTRKFLFAFQNPKYVPPVADNSVDSTIVSTTSSASSSCG 149 Query: 102 ---------------------------EIETVYI---PEKS----RGTLCVSSQVGCSLT 127 ++E VYI P+ S RGT+C+SSQVGCSL Sbjct: 150 NQQNISDADVAISPMKKPTLKEQKQFNKVEAVYIYHPPKASDSFGRGTVCLSSQVGCSLN 209 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVMMG 186 C FC TGT + RNL A EI+ Q++ + L DFP E S+ + ++NIV MG Sbjct: 210 CKFCRTGTAPIERNLLASEIVSQLVSVKHRLMDFPIYMTEEERKRASIEKSFVNNIVFMG 269 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 GEPL N+ NVKK++ I SD G+S KR+I +STSG I V ++GV LAISLHA Sbjct: 270 EGEPLYNYKNVKKAIEILSDGCGIS--KRKIIVSTSGVCNLIPDVVNDLGVNLAISLHAT 327 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 +N+LR+ +VPIN+ +PLE+L + R +N R ITFEYVML +ND DA L+K++ Sbjct: 328 TNELRDNIVPINKIFPLEVLFETLREQCFKNNNRHITFEYVMLNHVNDFIDDAKRLVKLV 387 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 K IP +NLI FN W G + CS + I FS+ + ++G S+P+R +G DIL ACGQLK Sbjct: 388 KDIPCSVNLIAFNEWEGSGFECSSDERIEEFSKYLYKNGISAPVRHSKGQDILGACGQLK 447 Query: 367 S 367 + Sbjct: 448 N 448 >gi|322419007|ref|YP_004198230.1| radical SAM enzyme, Cfr family [Geobacter sp. M18] gi|320125394|gb|ADW12954.1| radical SAM enzyme, Cfr family [Geobacter sp. M18] Length = 344 Score = 252 bits (644), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 139/343 (40%), Positives = 205/343 (59%), Gaps = 29/343 (8%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI--IYPEIVDEKISCDGTRKWL 89 R R QI+KW+Y DF M+++S+E R +L + I + PE V+ S DGTRK+L Sbjct: 25 RFRAKQIFKWLYQMDATDFDEMTNVSKEFRAVLKERAEIGDLSPEAVE--ASEDGTRKYL 82 Query: 90 LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149 R + +E+V IP++ R TLC+SSQVGC++ C+FC TG+ L RNLT EI+ Sbjct: 83 FR-----LKDGAAVESVLIPDEGRNTLCISSQVGCAMKCAFCLTGSFGLSRNLTTAEIVN 137 Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209 QV + + P ++NIV MGMGEPL N V ++ I +D G Sbjct: 138 QVCAVKR---EHP----------------VNNIVFMGMGEPLHNLAAVIPAVQILTDPDG 178 Query: 210 LSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 S R++T+STSG VP +A +G V LA+SL+A ++++R+ ++PINR+YPL+ L+ A Sbjct: 179 FQLSTRKVTVSTSGLVPEMAELGRGCTVNLAVSLNATTDEVRDRIMPINRRYPLKELLAA 238 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 C+ +P L + R IT EYV+++ +NDS DA L++++ IP+K+NLIPFN GC + Sbjct: 239 CKAFP-LPSRRWITMEYVLIRDLNDSLDDAKRLVRLISNIPSKVNLIPFNEHDGCSFKSP 297 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRI 372 Q+ I F + + + R+ RG DI AACGQLK R+ Sbjct: 298 TQETIDRFHKYLLDKHVTVITRSSRGGDISAACGQLKGKLDRM 340 >gi|251791823|ref|YP_003006543.1| Cfr family radical SAM protein [Aggregatibacter aphrophilus NJ8700] gi|247533210|gb|ACS96456.1| radical SAM enzyme, Cfr family [Aggregatibacter aphrophilus NJ8700] Length = 311 Score = 252 bits (644), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 136/295 (46%), Positives = 180/295 (61%), Gaps = 18/295 (6%) Query: 73 PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132 PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC+L C+FC Sbjct: 7 PEVAVEQRSADGTIKWAMQV------GDQQVETVYIPEADRATLCVSSQVGCALACTFCS 60 Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192 T Q RNLT EI+ QV A ++G+F + G+ R I+N+VMMGMGEPL Sbjct: 61 TAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVMMGMGEPLL 110 Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRN 252 N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLHA +++LR+ Sbjct: 111 NVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLHAPNDELRD 170 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKGIP 310 +VP+N+KY ++ LID+ Y +SNA ++T EYVML +ND A L ++LK P Sbjct: 171 EIVPLNKKYNIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHVNDHVEHAHQLAEVLKNTP 230 Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 KINLIP+NP+P Y S I F + + G + +R RG DI AACGQL Sbjct: 231 CKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGLTVIVRKTRGDDIDAACGQL 285 >gi|149194715|ref|ZP_01871810.1| hypothetical protein CMTB2_05022 [Caminibacter mediatlanticus TB-2] gi|149135138|gb|EDM23619.1| hypothetical protein CMTB2_05022 [Caminibacter mediatlanticus TB-2] Length = 355 Score = 252 bits (644), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 136/363 (37%), Positives = 218/363 (60%), Gaps = 35/363 (9%) Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76 L E LL++GI + R Q++ W+Y + + DF+ MS++ +++R L + F I E++ Sbjct: 8 LPEELLELGI---QPKFRVKQLYNWVYRKYVDDFEKMSNLPKDLREKLKKEFYINPLELI 64 Query: 77 DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-----------SRGTLCVSSQVGCS 125 + +I+ DGT K+L + + IETV I K ++ T+CVS+QVGC Sbjct: 65 NHEIASDGTEKFLFK-----LNDNHTIETVLIKMKDDRVENGKKKEAKYTVCVSTQVGCK 119 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC T VRNL+A EI+ QV + F ++ + + N+V M Sbjct: 120 VGCAFCLTAKGGFVRNLSAGEIVAQVWFMKK----FKNFDENKAL----------NVVFM 165 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 GMGEPL N++N+ K++ I + + GL+ + RR T+STSG P I ++GEE +GV LAISLH Sbjct: 166 GMGEPLDNYNNLVKAIKIIAHTDGLNIAPRRQTVSTSGIAPKIKKLGEENLGVNLAISLH 225 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV + LR L+P+N+ Y ++ +I+A R +P + +++ FEY+++K +ND+ A L+K Sbjct: 226 AVDDKLREQLIPLNKAYNIQSVIEAIREFP-IDKRKKVMFEYLVIKDVNDNLDSAKKLVK 284 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L GIP+K+NLI FNP+PG + D++ + F + G + IR +G+DI AACGQ Sbjct: 285 LLNGIPSKVNLIYFNPYPGSPFKRPDEETMKKFQRYLLDRGITCTIRQSKGIDISAACGQ 344 Query: 365 LKS 367 L+ Sbjct: 345 LRE 347 >gi|281202992|gb|EFA77193.1| putative ribosomal RNA large subunit methyltransferase N [Polysphondylium pallidum PN500] Length = 361 Score = 252 bits (643), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 150/372 (40%), Positives = 206/372 (55%), Gaps = 64/372 (17%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K ++LIG+ +E+L + L ++G Q + R QIW WIY +G ++ S++S + LL Sbjct: 43 KTKNLIGISKEDLTKQLTELGDFQSY---RIDQIWSWIYNKGQKNIDNFSNLSNVQKSLL 99 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +++ I Y + +++S DGTRK L+ F ++ETV+IPE RGTLCVSSQVGC Sbjct: 100 KEYYHIDYGTLDSDQLSKDGTRKILVGFSGD------QVETVFIPEARRGTLCVSSQVGC 153 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC+TGTQ+LVRNL EIL Q ++ARSL+ DF + R ISN+V Sbjct: 154 TFGCKFCFTGTQRLVRNLNVSEILGQFMMARSLMNDFGHTTE---------KRLISNVVF 204 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243 MGMGEPL N+ +L I +D GLS SK RIT+STSG VP I R+G+E G+ LAISL Sbjct: 205 MGMGEPLMNYRAASAALRIMTDPNGLSLSKSRITVSTSGVVPLIERLGKEFPGIGLAISL 264 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +N R+ +VPIN+++P+E LI C + L N +IT D P Sbjct: 265 HASNNKTRSEIVPINQQWPIEELIKTCIEFSKL-NTNKITI---------DKP------- 307 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 + I F+ I +G IR RG DILAACG Sbjct: 308 ----------------------------EKIKEFASIIANAGLKVTIRQSRGQDILAACG 339 Query: 364 QLKSLSKRIPKV 375 QLK+ S ++ K Sbjct: 340 QLKTESVKVKKT 351 >gi|283852881|ref|ZP_06370142.1| radical SAM enzyme, Cfr family [Desulfovibrio sp. FW1012B] gi|283571710|gb|EFC19709.1| radical SAM enzyme, Cfr family [Desulfovibrio sp. FW1012B] Length = 350 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 139/360 (38%), Positives = 202/360 (56%), Gaps = 22/360 (6%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +LI + ELE ++ +G P R Q+W+W++ +G RD M+D S+ +R L + Sbjct: 3 NLIDLTFHELETLVVSLGEPPYRAR----QVWQWLWQKGCRDIAAMTDTSKALRARLAEV 58 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 +I +P++ S DGT K+LL +G +E V IPEK T C+S+QVGC++ Sbjct: 59 ATIAWPQVARVSESADGTVKFLL-----TLGDGESVECVLIPEKDHYTACLSTQVGCAMG 113 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C+FC TG RN+T E+L QVL+AR L + V + N+V MGM Sbjct: 114 CAFCATGMMGFRRNMTPGEMLGQVLVARQYL------------LEKGVALALRNLVFMGM 161 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL N+DN+ K+L G S RRIT+ST+G ++ +G LA+SLHA + Sbjct: 162 GEPLLNYDNLVKTLEALHHPQGFDISGRRITVSTAGVARHLLDLGRTGLCSLAVSLHAPT 221 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 LR ++P K PL LI+ R YP + R+TFEY+ML G+NDS DA L+++L Sbjct: 222 QALREKIMPGAAKLPLGELIEILRQYP-MKPRERLTFEYLMLDGVNDSLEDARELVRLLS 280 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 + AK+NLI FN PG Y + + F E +K G ++ +R +G DI AACGQL++ Sbjct: 281 RVKAKVNLIVFNATPGLPYQPPPAERVFAFQEALKAKGLTATVRKSKGADIAAACGQLRA 340 >gi|302039009|ref|YP_003799331.1| ribosomal RNA large subunit methyltransferase N [Candidatus Nitrospira defluvii] gi|300607073|emb|CBK43406.1| Ribosomal RNA large subunit methyltransferase N [Candidatus Nitrospira defluvii] Length = 366 Score = 251 bits (641), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 148/378 (39%), Positives = 214/378 (56%), Gaps = 28/378 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + +L+ + E+ + +G P R SQI +W+Y R F MS++SQ+ R L Sbjct: 13 RTNLLALTESEMAAFVASLGWPA----YRASQILRWLYQERARTFAEMSNLSQKDREYLT 68 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I V S DGT+K +L + ++E V IP++ R TLC+S+QVGC+ Sbjct: 69 GSSRIERTSAVQIFSSQDGTKKLVL-----TLADGNQVECVLIPDEDRLTLCLSTQVGCT 123 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC TGT L RNL A EI+ QVLLA+ L + G++++N+V M Sbjct: 124 LDCGFCLTGTLGLQRNLRAHEIIDQVLLAQDHLQE---------------GQRLTNLVFM 168 Query: 186 GMGEPLCNFDNVKKSLS-IASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 GMGEPL N D V +++ + + + GL FS RRIT+ST+G I V + V LAISL+ Sbjct: 169 GMGEPLANLDAVADAVTRLTNQTWGLGFSGRRITISTAGLASRIKDVAP-LKVNLAISLN 227 Query: 245 AVSNDLRNILVPI-NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 A ++ LR+ L+P NR + L+ L+ ACR YP L++ R+TFEYV+L +ND DA L+ Sbjct: 228 ATTDALRDQLMPAANRLHSLDALLAACRAYP-LADRDRLTFEYVLLADVNDRTEDAARLV 286 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+L+G+ K+NLI FNP+PG Y I TF + ++R +R RG D+L ACG Sbjct: 287 KLLRGLRCKVNLIAFNPFPGNPYRRPSDAAIDTFQDTLRRGHVDVYLRRSRGRDVLGACG 346 Query: 364 QLKSLSKRIPKVPRQEMQ 381 QL L +V ++Q Sbjct: 347 QLGRLDTSEAQVALTQIQ 364 >gi|83589757|ref|YP_429766.1| hypothetical protein Moth_0906 [Moorella thermoacetica ATCC 39073] gi|123752954|sp|Q2RK16|RLMN_MOOTA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|83572671|gb|ABC19223.1| 23S rRNA m(2)A-2503 methyltransferase [Moorella thermoacetica ATCC 39073] Length = 354 Score = 250 bits (639), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 148/368 (40%), Positives = 211/368 (57%), Gaps = 23/368 (6%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 L G++ +ELEE +++G R QI++W++ R + + MSD+ + R L Sbjct: 6 DLRGLLPQELEELAVRLG----EAPYRGRQIFRWLHARRAKGIEVMSDLPRAFRERLALV 61 Query: 68 FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVE-IETVYIPEKSRGTLCVSSQVGCS 125 + +++ ++ DG TRK LL G +E + +Y + R T C+SSQVGC+ Sbjct: 62 AELPPVRVLNRLVAADGLTRKLLLGLGD---GNSIECVLMIYKDGRRRNTACLSSQVGCA 118 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + CSFC TG L RNLTA EI+LQ L + L + G G +ISNIV M Sbjct: 119 MGCSFCATGQGGLQRNLTASEIILQALALGAELAEGEG------------GNRISNIVFM 166 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLH 244 GMGEPL N++ V K + I D G S RRITLST G VP I R+ E+ + LA+SLH Sbjct: 167 GMGEPLNNYEAVMKGVRIFEDPSGWGISHRRITLSTCGIVPGIERLAREKPPLELAVSLH 226 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV+N+LR+ L+PINR+YPLE LI ACR Y ++ RR+TFEY ++ G+ND DA L + Sbjct: 227 AVTNELRDKLMPINRRYPLEELIPACRRYAEITG-RRVTFEYALIAGVNDRREDARGLSR 285 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L+ + A +N+IP NP G + F ++ +G + IR RG DI AACGQ Sbjct: 286 LLRDMLAFVNIIPLNPVAGSGFKGVPPAAARAFVALLQEAGLEAAIRDSRGQDIAAACGQ 345 Query: 365 LKSLSKRI 372 L+ S+ + Sbjct: 346 LRFASREV 353 >gi|224373787|ref|YP_002608159.1| ribosomal RNA large subunit methyltransferase N [Nautilia profundicola AmH] gi|259491991|sp|B9L721|RLMN_NAUPA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|223590036|gb|ACM93772.1| radical SAM enzyme, Cfr family [Nautilia profundicola AmH] Length = 354 Score = 250 bits (639), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 137/363 (37%), Positives = 212/363 (58%), Gaps = 35/363 (9%) Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76 L E L++ GI + RT Q+++W+Y + + DF+ M +I ++++ L + F I E++ Sbjct: 10 LPEELMEFGI---QPKFRTKQLYQWVYRKYVDDFEEMKNIPKDLKAKLKKEFIINPLELI 66 Query: 77 DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-----------SRGTLCVSSQVGCS 125 + +I+ DGT K+L + +ETV I K ++ T+CVS+QVGC Sbjct: 67 NHEIATDGTEKFLFKMHDNHT-----VETVLIKMKDEEIKDGKIKEAKYTVCVSTQVGCK 121 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC T VRNL+A EI+ QV + F ++ K N+V M Sbjct: 122 VGCAFCLTAKGGFVRNLSAGEIVAQVWWMKK----FKNFDE----------NKALNVVYM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 GMGEPL N+D + K++ I ++ G++ S RR T+STSG P I R+G E +GV LAISLH Sbjct: 168 GMGEPLDNYDALVKAIKILANPDGMNISPRRQTVSTSGIAPKIKRLGNENLGVNLAISLH 227 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV ++LR L+P+N+ Y +E +IDA R +P + +++ FEY+++K +ND A L+K Sbjct: 228 AVDDELREQLIPLNKAYNIESVIDAIREFP-IDKRKKVMFEYLVIKDVNDDIESAKKLVK 286 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L GIP+K+NLI FNP+PG + D + F + + G IR +G+DI AACGQ Sbjct: 287 LLNGIPSKVNLIYFNPYPGTNFKRPDDATMKKFQDYLINKGIMCTIRKSKGMDISAACGQ 346 Query: 365 LKS 367 L+ Sbjct: 347 LRE 349 >gi|302392191|ref|YP_003828011.1| 23S rRNA m(2)A-2503 methyltransferase [Acetohalobium arabaticum DSM 5501] gi|302204268|gb|ADL12946.1| 23S rRNA m(2)A-2503 methyltransferase [Acetohalobium arabaticum DSM 5501] Length = 350 Score = 250 bits (639), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 141/337 (41%), Positives = 201/337 (59%), Gaps = 19/337 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI+ WIY +G +F+ M+++SQ +R L I + S DGT K+L Sbjct: 28 FRAEQIFNWIYKQGAVNFEEMTNLSQGLRSRLQSKAYIQQLTEITRAKSEDGTVKFLFEL 87 Query: 93 PARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 EIETV++P + R ++CVS+QVGC + C+FC TG Q L RNLT EI+ Q+ Sbjct: 88 E-----DNKEIETVFLPYQDGRNSICVSTQVGCGMGCNFCATGQQGLERNLTTGEIVSQI 142 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 L + L+G G + PS+ ISN+V MGMGEPL N+DN + + I + L+ Sbjct: 143 LKVQQLMGS-NGYD-------PSL---ISNVVFMGMGEPLANYDNFLRVIDILNSEKALN 191 Query: 212 FSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 S RRIT+ST G VP I R+ + E+ ++LAISLHA + LR+ ++PIN++YPLE LI AC Sbjct: 192 ISMRRITVSTCGLVPQIKRLADKELQLVLAISLHAAEDKLRSEMMPINKRYPLEELIAAC 251 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 +Y +N RRITFEY ++ G+N+ +DA L ++L G+ +NLIP NP + Sbjct: 252 EYYLQKTN-RRITFEYALVDGVNNRRQDAEKLAQLLSGLLCHVNLIPVNPVKELGLTRPN 310 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 +K I F E + R + +R RG DI AACGQL++ Sbjct: 311 RKAIKEFKEILDRHNIQATVRQERGNDIEAACGQLRT 347 >gi|291276281|ref|YP_003516053.1| radical-SAM-proteins [Helicobacter mustelae 12198] gi|290963475|emb|CBG39305.1| Putative radical-SAM-proteins [Helicobacter mustelae 12198] Length = 379 Score = 250 bits (639), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 137/354 (38%), Positives = 214/354 (60%), Gaps = 34/354 (9%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI+ W+YV+ +DF M ++ + +++ L++ + I + EI+ + SCDGT+K+L + Sbjct: 35 FRAKQIYHWLYVQYAQDFDVMHNLPKALKNKLSKDYRIKHLEIMKVETSCDGTKKYLFK- 93 Query: 93 PARCIGGPVEIETVYIPEK-------------SRGTLCVSSQVGCSLTCSFCYTGTQKLV 139 + G E+V I + SR T CVSSQ+GC + C+FC+T V Sbjct: 94 ---TLDGHT-FESVLIKMREEKIDCEGRIIHGSRYTFCVSSQIGCKVGCAFCFTAKGGFV 149 Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199 RNL++ EI+ QVL + + + P K NIV MGMGEPL N +NV + Sbjct: 150 RNLSSGEIVEQVLQLKK-----------DNSLAPE---KRVNIVFMGMGEPLNNLENVAQ 195 Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPIN 258 ++ I S+ GLS S RR T+STSG P IA++GE ++GV LAISLHAV ++LR+ L+P+N Sbjct: 196 AIRIMSELDGLSISPRRQTISTSGIAPKIAKLGELDLGVQLAISLHAVDDELRSRLIPMN 255 Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318 + Y ++ +IDA R +P + +++ FEY+++K +ND + A L+K+L GI AK+NLI F Sbjct: 256 KAYNIKSIIDAVRQFP-VDTRKKVMFEYLVIKDVNDDLKSAKILLKLLDGIRAKVNLILF 314 Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRI 372 NP G E+ + + + F++ + + G + IR RG+DI AACGQL+ ++ Sbjct: 315 NPHEGSEFQRPEMEQVKKFADFLVQRGLLATIRESRGIDISAACGQLREKETKV 368 >gi|332295839|ref|YP_004437762.1| Ribosomal RNA large subunit methyltransferase N [Thermodesulfobium narugense DSM 14796] gi|332178942|gb|AEE14631.1| Ribosomal RNA large subunit methyltransferase N [Thermodesulfobium narugense DSM 14796] Length = 353 Score = 250 bits (638), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 142/368 (38%), Positives = 213/368 (57%), Gaps = 27/368 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K S + ELE+ +G + R +Q++ W+Y I DF MS++S +R L Sbjct: 1 MNKRSFFELSFSELEKFFTDLGFS----KYRANQVFSWVYKNNIYDFMQMSNLSLNLRDL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L+ F + +P+I S D + K+LL +G IETV+I K+R T+C+SSQ+G Sbjct: 57 LSSSFDLSFPKIQSTVESADNSFKFLLH-----LGENDFIETVFINHKNRNTICISSQIG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C C TG RNL EI+LQV+ +E V +G KI NIV Sbjct: 112 CPVGCVMCSTGKIGFKRNLKVSEIVLQVMA-------------VENFVRSKMG-KIDNIV 157 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG--VMLAI 241 MGMGEP+ NFDNV K++ I +D G SFS RRI +STSGFV I ++ +E+G + LA+ Sbjct: 158 FMGMGEPMLNFDNVIKAIKILTDKNGKSFSPRRIVISTSGFVDGIKKL-KEVGLPIKLAV 216 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++++R+ L+PIN+ + + LI A Y L++ RR+T+EYV+++ INDS +D + Sbjct: 217 SLHATTDEIRSKLIPINKTFGISELIKASEEY-ALASKRRVTYEYVLMESINDSDQDIIR 275 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L +LKG+ A +NL+ +N + ++ + I F + + G + IR +G DI A Sbjct: 276 LKDLLKGLHAHVNLVKYNQSLSNVRIKTNIRRIKLFEKMLNNFGIKTTIRFSKGEDINGA 335 Query: 362 CGQLKSLS 369 CGQL LS Sbjct: 336 CGQLALLS 343 >gi|34556516|ref|NP_906331.1| ribosomal RNA large subunit methyltransferase N [Wolinella succinogenes DSM 1740] gi|81833710|sp|Q7MSW1|RLMN_WOLSU RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|34482230|emb|CAE09231.1| conserved hypothetical protein [Wolinella succinogenes] Length = 359 Score = 249 bits (637), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 135/346 (39%), Positives = 205/346 (59%), Gaps = 24/346 (6%) Query: 30 HVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWL 89 H R Q++ W+Y R +F+ M ++S+E+R L Q +S ++V E++S DG+RK+L Sbjct: 17 HPPFRAKQLYHWLYHRYEEEFEKMHNLSKEIRQKLTQDYSATLTKVVREEVSEDGSRKYL 76 Query: 90 LRFPARCIGGPVEIETVY--------IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141 + V ++ I E + T+CVSSQVGC + CSFC+T VRN Sbjct: 77 FQTHDGLTYEAVLLKMKEKKEDEEGRIVEGEKYTICVSSQVGCKVGCSFCFTAKGGFVRN 136 Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 L+A EI+ Q++ + L P K NIV MGMGEPL NF+N+ +++ Sbjct: 137 LSAGEIVYQIVALKRLNALAP--------------EKRVNIVYMGMGEPLDNFENLIQAI 182 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRK 260 I S+ GLS S +R T+STSG P I ++G ++GV LAISLHAV ++LR L+P+N+ Sbjct: 183 RILSELDGLSISTKRQTISTSGIAPKIEKLGALDLGVQLAISLHAVDDELRTRLIPMNKA 242 Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 Y + +I+A R +P + + +R+ FEY+++KG+ND + A L+K+L GI +K+NLI FNP Sbjct: 243 YNIASIIEAVRRFP-IDSRKRVMFEYLVIKGVNDDEKSAKTLLKLLNGIKSKVNLIYFNP 301 Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 G E+ + +V F + + G IR +G+DI AACGQL+ Sbjct: 302 HEGSEFERPLESKMVAFQKYLTDRGLLCTIRESKGIDISAACGQLR 347 >gi|94987122|ref|YP_595055.1| ribosomal RNA large subunit methyltransferase N [Lawsonia intracellularis PHE/MN1-00] gi|123082152|sp|Q1MQJ3|RLMN_LAWIP RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|94731371|emb|CAJ54734.1| predicted Fe-S-cluster redox enzyme [Lawsonia intracellularis PHE/MN1-00] Length = 358 Score = 249 bits (637), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 142/339 (41%), Positives = 197/339 (58%), Gaps = 22/339 (6%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93 R QIW+W++ + I D + M+++ Q++R L I PEIV + S DGT+K+LLR Sbjct: 26 RAMQIWQWVWQKQITDIESMTNLPQKIRASLTALIKINLPEIVTIQQSSDGTKKFLLRLS 85 Query: 94 ARCIGGPVEIETVYIPEKSRG-----TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 + IETV IP + T C+SSQVGCS+ C+FC T T +RNLTA EI+ Sbjct: 86 DGAL-----IETVLIPSIDKAGNIRITQCLSSQVGCSMGCTFCSTATMGFIRNLTAGEIV 140 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 QVLLA+ L D + I I NIV MGMGEPL N + ++L I Sbjct: 141 SQVLLAKLHLNDNKPDKPI-----------IRNIVFMGMGEPLLNLTELTRALHILHSEK 189 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 GL+FS RRIT+ST G I + E LA+SLHA + +LR+ ++P K+ L+ LID Sbjct: 190 GLNFSARRITVSTCGIKKGIQALSENGLAFLALSLHASNQELRSTIMPKAAKWDLKELID 249 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 ++Y L +ITFEY++L GINDSP A L K++ I K+NLIP+NP G YL Sbjct: 250 TLKNY-SLKKREKITFEYLLLGGINDSPEHAKELAKLITDIKGKLNLIPYNPAQGQPYLK 308 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 +++I+ F + + G + +R +G DI AACGQLK+ Sbjct: 309 PTEENILKFQKVLWSKGIVTILRKSKGQDINAACGQLKT 347 >gi|298529502|ref|ZP_07016905.1| radical SAM enzyme, Cfr family [Desulfonatronospira thiodismutans ASO3-1] gi|298510938|gb|EFI34841.1| radical SAM enzyme, Cfr family [Desulfonatronospira thiodismutans ASO3-1] Length = 332 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 140/332 (42%), Positives = 194/332 (58%), Gaps = 17/332 (5%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93 R Q+W+WI+ + DFQ M++IS+ +R L Q F + P +V +K S DGT K LL Sbjct: 14 RADQLWQWIWQKKAGDFQEMTNISKALRSSLQQEFVLQRPAVVQKKESIDGTVKLLL--- 70 Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153 + IETV IPEK T C+S+QVGC + C FC TG RNLT EI QVL+ Sbjct: 71 --GLNDGFFIETVIIPEKDYYTQCISTQVGCPMGCVFCSTGCMGFKRNLTPGEIASQVLV 128 Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213 A C +E + S +++N+V+MGMGEPL N+D VKK++ + +DS+GL S Sbjct: 129 A---------CRHLEDTGLDST--RLTNVVLMGMGEPLLNWDAVKKAMYMMTDSLGLGIS 177 Query: 214 KRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY 273 +RR+TLST G + G MLA+SLHA DLR L+P + ++ L+ A Y Sbjct: 178 RRRLTLSTVGVRDRLQEFGSSRLGMLAVSLHAPDQDLRRRLMPGAATWDIKDLVRALEQY 237 Query: 274 PGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKD 333 P L+ RIT EYV+LK INDSP A L+++L + K+NL+ +NP Y +K Sbjct: 238 P-LAPRERITIEYVLLKDINDSPAQARALVRLLSRVKCKVNLLAYNPGEQEGYQPPQEKT 296 Query: 334 IVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I+TF E ++ G + +R +G DI AACGQL Sbjct: 297 ILTFEEVLRSKGLTVTLRKSKGQDISAACGQL 328 >gi|303326495|ref|ZP_07356938.1| radical SAM enzyme, Cfr family [Desulfovibrio sp. 3_1_syn3] gi|302864411|gb|EFL87342.1| radical SAM enzyme, Cfr family [Desulfovibrio sp. 3_1_syn3] Length = 353 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 137/347 (39%), Positives = 198/347 (57%), Gaps = 30/347 (8%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 + R Q+W+WI+ + RDF MS++S+ R L + I +PE+ + S DGT K+LLR Sbjct: 24 KFRAVQVWQWIWQKMARDFDAMSNVSKACRARLAETARIDWPEVARVQESSDGTTKFLLR 83 Query: 92 FPARCIGGPVEIETVYIPEKSR-----GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEE 146 + +ETV IP SR T C+SSQVGC++ C+FC TG RN+T E Sbjct: 84 LEDGAL-----VETVLIPSDSREGVRRWTQCLSSQVGCAMGCTFCATGDMGFERNMTMGE 138 Query: 147 ILLQVLLARSLLGD----FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS 202 IL Q+L+AR LGD +P + N+V MGMGEPL N V ++L Sbjct: 139 ILGQILVAREHLGDNRPDWP---------------VLRNLVFMGMGEPLLNLREVMRALQ 183 Query: 203 IASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYP 262 ++ GL+FS RRIT+ST G +A +G LA+SLHA + +LR ++P ++P Sbjct: 184 SLNNDKGLNFSPRRITVSTCGIEKGLAELGASGLAYLAVSLHAPTQELRARIMPKAARWP 243 Query: 263 LEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP 322 L+ L+ A + YP L RITFEY++L GIND P A L +++ I K+NLI +NP Sbjct: 244 LDQLLAALKSYP-LKTRERITFEYLLLGGINDGPGQAGELARLVADIKGKLNLIVYNPAE 302 Query: 323 GCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369 G Y D+ ++ F +C+ + ++ +R +G DI AACGQLK+ S Sbjct: 303 GAPYAAPDEARVLAFEQCLWKRHITAIVRKSKGQDIKAACGQLKAAS 349 >gi|110802908|ref|YP_699026.1| ribosomal RNA large subunit methyltransferase N [Clostridium perfringens SM101] gi|123341702|sp|Q0SS81|RLMN_CLOPS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|110683409|gb|ABG86779.1| radical SAM enzyme, Cfr family [Clostridium perfringens SM101] Length = 347 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 147/354 (41%), Positives = 209/354 (59%), Gaps = 29/354 (8%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 EEL+E + + G R QI+ WIY + + +F+ M +IS+ + L+++F I PE Sbjct: 10 EELKEWMKENG----ENAFRAKQIFDWIYKKEVFNFEEMKNISKALIGKLSENFYIGIPE 65 Query: 75 IVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133 ++D S DGTRK LL +G IE V + K ++CVS+Q+GC + C FC + Sbjct: 66 VIDYLSSSEDGTRKILLG-----LGDGNIIECVIMKYKYGNSICVSTQIGCRMGCKFCAS 120 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 + +VRNLTA EIL +VL+ + LLG+ +ISNIV+MG GEPL N Sbjct: 121 TLEGMVRNLTAGEILSEVLIGQKLLGE-----------------RISNIVLMGSGEPLDN 163 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRN 252 +DNV K L I + GL+ +R ITLST G VP I + + E+ V LAISLHAVS++ R Sbjct: 164 YDNVMKFLEIVNADYGLNIGQRHITLSTCGLVPKIREMADKEMQVTLAISLHAVSDEKRK 223 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312 ++PI KY + ++DAC +Y RRITFEY ++ G+ND+ DA +L ++LKG+ Sbjct: 224 TIMPIANKYSISEILDACNYYIE-KTGRRITFEYSLVSGVNDTKEDAKSLGRLLKGMLCH 282 Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +NLIP N E+ S +KDI TF +K G + +R G DI AACGQL+ Sbjct: 283 VNLIPVNEIKENEFKKSTKKDIETFLNTLKTYGVEATVRREMGSDINAACGQLR 336 >gi|55981906|ref|YP_145203.1| ribosomal RNA large subunit methyltransferase N [Thermus thermophilus HB8] gi|81363686|sp|Q5SGZ3|RLMN_THET8 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|55773319|dbj|BAD71760.1| conserved hypothetical protein [Thermus thermophilus HB8] Length = 355 Score = 247 bits (630), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 140/345 (40%), Positives = 197/345 (57%), Gaps = 27/345 (7%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93 R +QI W+Y +G RDF M+D+ + +R L + + + +V S DG+ K+L Sbjct: 24 RRAQIAHWLYAKGARDFSEMTDLPKALREALAREWRLSEFSLVQAFPSQDGSVKYLFTL- 82 Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153 + G + E VY+P ++R T+C+S+ VGC C+FC TG RNLTA EIL Q+L Sbjct: 83 ---LDGK-KTEAVYMPYENRKTVCLSTMVGCPAGCTFCATGALGFGRNLTAAEILDQLLT 138 Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213 G P R+I N+V+MGMGEPL N NV K++ I L+ S Sbjct: 139 IAYHQGLSP--------------REIRNVVLMGMGEPLLNLRNVLKAVRIMLHKKALALS 184 Query: 214 KRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 RR+TLST G I R+ EE +GV LA+SLHA ++ R ++P +YP+ +++A RH Sbjct: 185 PRRVTLSTVGIPKGIYRLAEEDLGVRLALSLHAPDDETRRKIIPTAHRYPIAEIMEAVRH 244 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y RR+TFEY +LKG+ND A L K+LKG+ A +NLIPFNPW G + + + Sbjct: 245 YHA-KTKRRVTFEYTLLKGVNDHLWQARLLAKLLKGLSAHVNLIPFNPWEGAPVVGTPRA 303 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPR 377 ++ F+E +KR G + IR RG D+ AACGQL KVPR Sbjct: 304 GVLAFAEELKRLGVPTSIRWSRGQDVGAACGQLAL------KVPR 342 >gi|168214217|ref|ZP_02639842.1| radical SAM enzyme, Cfr family [Clostridium perfringens CPE str. F4969] gi|170714277|gb|EDT26459.1| radical SAM enzyme, Cfr family [Clostridium perfringens CPE str. F4969] Length = 347 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 146/354 (41%), Positives = 209/354 (59%), Gaps = 29/354 (8%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 EEL+E + + G R QI+ WIY + + +F+ M +IS+ + L+++F I PE Sbjct: 10 EELKEWMKENG----ESAFRAKQIFDWIYKKEVFNFEEMKNISKALIGKLSENFYIGIPE 65 Query: 75 IVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133 ++D S DGTRK LL +G IE V + K ++CVS+Q+GC + C FC + Sbjct: 66 VIDYLSSSEDGTRKILLG-----LGDGNIIECVIMRYKYGNSICVSTQIGCRMGCKFCAS 120 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 + +VRNLTA EIL +VL+ + LLG+ +ISNIV+MG GEPL N Sbjct: 121 TLEGMVRNLTAGEILSEVLIGQKLLGE-----------------RISNIVLMGSGEPLDN 163 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRN 252 +DNV K L + + GL+ +R ITLST G VP I + + E+ V LAISLHAVS++ R Sbjct: 164 YDNVMKFLELVNADYGLNIGQRHITLSTCGLVPKIHEMADKEMQVTLAISLHAVSDEKRK 223 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312 ++PI KY + ++DAC +Y RRITFEY ++ G+ND+ DA +L ++LKG+ Sbjct: 224 TIMPIANKYSISEILDACNYYIE-KTGRRITFEYSLVSGVNDTKEDAKSLGRLLKGMLCH 282 Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +NLIP N E+ S +KDI TF +K G + +R G DI AACGQL+ Sbjct: 283 VNLIPVNEIKENEFKKSTKKDIETFLNTLKTYGVEATVRREMGSDINAACGQLR 336 >gi|313681247|ref|YP_004058985.1| 23S rRNA m(2)a-2503 methyltransferase [Sulfuricurvum kujiense DSM 16994] gi|313154107|gb|ADR32785.1| 23S rRNA m(2)A-2503 methyltransferase [Sulfuricurvum kujiense DSM 16994] Length = 354 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 140/349 (40%), Positives = 198/349 (56%), Gaps = 30/349 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QIW WIY + F+ M ++ + +R L Q + I+ +I ++ S DGT K+L Sbjct: 22 FRAKQIWGWIYHQYATSFETMQNLPKTMREELAQTYEIMPLKIARKECSTDGTIKYLFEL 81 Query: 93 PARCIGGPVEI-----------ETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141 G VE E I ++R T+CVS+QVGC + CSFC T R+ Sbjct: 82 SD---GKTVETVWLKMKDESIDEEGNIEHEARYTVCVSTQVGCKVGCSFCLTAKGGFTRD 138 Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 LTA EI+ QVL + M + NIV MGMGEPL N DN+ K++ Sbjct: 139 LTAGEIVAQVLAVK--------------MDNNLAAHRRLNIVYMGMGEPLDNLDNLAKAI 184 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRK 260 +I D GLS S +R T+STSG I ++GE ++GV +AISLHAV ++LR L+P+N+ Sbjct: 185 TILKDEEGLSISGKRQTVSTSGLSTKIDKLGEMDLGVHIAISLHAVDDELRTELIPMNKA 244 Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 Y + +IDA + +P + +R+ FEY+++K ND A L+K+L GI AK+NLI FNP Sbjct: 245 YNIASIIDAVKRFP-IDTRKRVMFEYLVIKNKNDDLGSAKKLVKLLHGIKAKVNLIYFNP 303 Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369 +PG +Y ++D+V F E + + G IR +GLDI AACGQLK S Sbjct: 304 YPGSDYQRPSREDMVAFQEYLIKHGVLCTIRDSKGLDISAACGQLKEKS 352 >gi|297182513|gb|ADI18675.1| predicted Fe-S cluster redox enzyme [uncultured Acidobacteria bacterium HF4000_26D02] Length = 384 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 143/352 (40%), Positives = 202/352 (57%), Gaps = 28/352 (7%) Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75 ELE + +G+ + H R QI++WIY RG+ F M+D+S VR L +I P + Sbjct: 40 ELEAVVSTLGVERFHAR----QIYRWIYRRGLERFDRMTDLSLPVREQLEAALTITTPAV 95 Query: 76 VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135 + S DGT+K+L+ + IE+V+IP+ T CVS+QVGC++ C FC TG Sbjct: 96 RTREQSSDGTQKFLV-----TLADGRTIESVFIPDTPAMTFCVSTQVGCAMRCGFCLTGQ 150 Query: 136 QKLVRNLTAEEILLQV-LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194 LVRNL+A EI QV +LAR L + + NIV+MGMGEPL N+ Sbjct: 151 MGLVRNLSAGEIAGQVRVLAREL----------------ELQDRRFNIVLMGMGEPLHNY 194 Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV-MLAISLHAVSNDLRNI 253 D K+L I + GL+ + RR+TLST G +P + R+ E + LAISLHA ++ LR+ Sbjct: 195 DATMKALRILAAPAGLALTPRRVTLSTIGILPALERLAHEPWLPNLAISLHATTDRLRHE 254 Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313 L+P +R L L CR +P + + RITFEYV+L G+ND+ DA L K+L+G+ AK+ Sbjct: 255 LIPTSRTQRLGDLAAVCRRFP-VKHRDRITFEYVLLAGVNDTEADATRLPKLLRGLRAKV 313 Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 NLIP N PG + + + F+ + +G +R RG DI AACGQL Sbjct: 314 NLIPLNEAPGIPFSRPSDRRVDWFARSLASAGLRVSVRKSRGRDIRAACGQL 365 >gi|162453111|ref|YP_001615478.1| radical SAM superfamily protein [Sorangium cellulosum 'So ce 56'] gi|205829655|sp|A9FFJ6|RLMN_SORC5 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|161163693|emb|CAN94998.1| Radical SAM superfamily protein [Sorangium cellulosum 'So ce 56'] Length = 389 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 149/379 (39%), Positives = 208/379 (54%), Gaps = 62/379 (16%) Query: 37 QIWKWIYVRGIRDFQGMSDISQEVR-HLLNQHFS-IIYPEIVDEKISCDGTRKWLLRFPA 94 Q+++WI+ RG+ D M+++ +R HL + ++ PE V S DGTRK LLR Sbjct: 32 QVFQWIHRRGVLDPAAMTNLPARLREHLAAEGLGEVLTPERVHR--SEDGTRKLLLR--- 86 Query: 95 RCIGGPVEIETVYIPEKS----------------------------------RGTLCVSS 120 + IETV +P S R T C+S+ Sbjct: 87 --LRDGATIETVLLPSVSGPGSQAQLDADAAAALDDDEDDDAAAEAGAAPRVRVTQCIST 144 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC++ C FC +G L R+L AEEI QVLL R++L + G ++ Sbjct: 145 QVGCAMGCGFCASGVAGLKRHLGAEEIAGQVLLGRAMLEE---------------GEELR 189 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG--VM 238 N+V MGMGEPL N++ +SL + + G++ S RR+T+STSG VP IAR+G + G + Sbjct: 190 NVVYMGMGEPLHNYEATARSLRLLTHPEGINLSTRRVTVSTSGLVPEIARLGADFGGQIA 249 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LAISLHA ++ R+ L+PINRK+PL+ L+ A R YP L RRIT EY ++ G ND P + Sbjct: 250 LAISLHAADDETRSALMPINRKHPLDELLAALRAYP-LPRRRRITIEYTLVAGQNDDPAE 308 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L K+L+G+P KINLIP NP Q+ + F E + ++GYS +R RG D+ Sbjct: 309 ARRLAKLLRGLPVKINLIPMNPIEASSLGPPAQERVAAFQEVLTQAGYSCFVRRRRGDDV 368 Query: 359 LAACGQLKSLSKRIPKVPR 377 AACGQL L + PKV R Sbjct: 369 SAACGQLVLLGAK-PKVRR 386 >gi|18310722|ref|NP_562656.1| radical SAM enzyme, Cfr family [Clostridium perfringens str. 13] gi|110801148|ref|YP_696426.1| radical SAM protein [Clostridium perfringens ATCC 13124] gi|168207267|ref|ZP_02633272.1| radical SAM enzyme, Cfr family [Clostridium perfringens E str. JGS1987] gi|168210627|ref|ZP_02636252.1| radical SAM enzyme, Cfr family [Clostridium perfringens B str. ATCC 3626] gi|168217027|ref|ZP_02642652.1| radical SAM enzyme, Cfr family [Clostridium perfringens NCTC 8239] gi|182625883|ref|ZP_02953649.1| radical SAM enzyme, Cfr family [Clostridium perfringens D str. JGS1721] gi|81766963|sp|Q8XJL6|RLMN_CLOPE RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123049744|sp|Q0TPL4|RLMN_CLOP1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|18145403|dbj|BAB81446.1| conserved hypothetical protein [Clostridium perfringens str. 13] gi|110675795|gb|ABG84782.1| radical SAM enzyme, Cfr family [Clostridium perfringens ATCC 13124] gi|170661362|gb|EDT14045.1| radical SAM enzyme, Cfr family [Clostridium perfringens E str. JGS1987] gi|170711321|gb|EDT23503.1| radical SAM enzyme, Cfr family [Clostridium perfringens B str. ATCC 3626] gi|177908917|gb|EDT71409.1| radical SAM enzyme, Cfr family [Clostridium perfringens D str. JGS1721] gi|182380930|gb|EDT78409.1| radical SAM enzyme, Cfr family [Clostridium perfringens NCTC 8239] Length = 347 Score = 246 bits (629), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 146/354 (41%), Positives = 209/354 (59%), Gaps = 29/354 (8%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 EEL+E + + G R QI+ WIY + + +F+ M +IS+ + L+++F I PE Sbjct: 10 EELKEWMKENG----ESAFRAKQIFDWIYKKEVFNFEEMKNISKALIGKLSENFYIGIPE 65 Query: 75 IVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133 ++D S DGTRK LL +G IE V + K ++CVS+Q+GC + C FC + Sbjct: 66 VIDYLSSSEDGTRKILL-----GLGDGNIIECVIMRYKYGNSICVSTQIGCRMGCKFCAS 120 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 + +VRNLTA EIL +VL+ + LLG+ +ISNIV+MG GEPL N Sbjct: 121 TLEGMVRNLTAGEILSEVLIGQKLLGE-----------------RISNIVLMGSGEPLDN 163 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRN 252 +DNV K L + + GL+ +R ITLST G VP I + + E+ V LAISLHAVS++ R Sbjct: 164 YDNVMKFLELVNADYGLNIGQRHITLSTCGLVPKIREMADKEMQVTLAISLHAVSDEKRK 223 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312 ++PI KY + ++DAC +Y RRITFEY ++ G+ND+ DA +L ++LKG+ Sbjct: 224 TIMPIANKYSISEILDACNYYIE-KTGRRITFEYSLVSGVNDTKEDAKSLGRLLKGMLCH 282 Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +NLIP N E+ S +KDI TF +K G + +R G DI AACGQL+ Sbjct: 283 VNLIPVNEIKENEFKKSTKKDIETFLNTLKTYGVEATVRREMGSDINAACGQLR 336 >gi|46199876|ref|YP_005543.1| florfenicol resistance protein [Thermus thermophilus HB27] gi|81567593|sp|Q72HC1|RLMN_THET2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|46197503|gb|AAS81916.1| florfenicol resistance protein [Thermus thermophilus HB27] Length = 355 Score = 246 bits (629), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 140/345 (40%), Positives = 196/345 (56%), Gaps = 27/345 (7%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93 R +QI W+Y +G RDF M+D+ + +R L + + + +V S DG+ K+L Sbjct: 24 RRAQIAHWLYAKGARDFSEMTDLPKALREALAREWRLSEFSLVQAFPSQDGSVKYLFTL- 82 Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153 + G + E VY+P ++R T+C+S+ VGC C+FC TG RNLTA EIL Q+L Sbjct: 83 ---LDGK-KTEAVYMPYENRKTVCLSTMVGCPAGCTFCATGALGFGRNLTAAEILDQLLT 138 Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213 G P R+I N+V+MGMGEPL N NV K++ I L+ S Sbjct: 139 IAYHQGLSP--------------REIRNVVLMGMGEPLLNLRNVLKAVRIMLHKKALALS 184 Query: 214 KRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 RR+TLST G I R+ EE +GV LA+SLHA ++ R ++P +YP+ +++A RH Sbjct: 185 PRRVTLSTVGIPKGIYRLAEEDLGVRLALSLHAPDDETRRKIIPTAHRYPIAEIMEAVRH 244 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y RR+TFEY +LKG+ND A L K+LKG+ A +NLIPFNPW G + + Sbjct: 245 YHA-KTKRRVTFEYTLLKGVNDHLWQARLLAKLLKGLSAHVNLIPFNPWEGAPVAGTPKA 303 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPR 377 ++ F+E +KR G + IR RG D+ AACGQL KVPR Sbjct: 304 GVLAFAEELKRLGVPTSIRWSRGQDVGAACGQLAL------KVPR 342 >gi|217967818|ref|YP_002353324.1| radical SAM enzyme, Cfr family [Dictyoglomus turgidum DSM 6724] gi|254807171|sp|B8E0X3|RLMN_DICTD RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|217336917|gb|ACK42710.1| radical SAM enzyme, Cfr family [Dictyoglomus turgidum DSM 6724] Length = 348 Score = 246 bits (628), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 140/337 (41%), Positives = 203/337 (60%), Gaps = 24/337 (7%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDG-TRKWLLRF 92 R QI+ WIY + + + M+++S+ +R L ++FS P++V +I+ DG T+K+LL Sbjct: 25 RADQIFDWIYKKLVLNPLDMTNLSKTLRQKLLEYFSFQIPKVV--RITGDGNTKKYLLEL 82 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 IETV I K+R T+CVS QVGC + C FC TG L RNL EI+ Q++ Sbjct: 83 E-----DGENIETVLISHKNRNTVCVSVQVGCPIGCKFCATGLIGLKRNLETHEIIGQLM 137 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 + + ED+E KISN+V MGMGEPL N+DNV KS+ I + G + Sbjct: 138 VIQ---------EDLE-----KKEEKISNVVYMGMGEPLANYDNVIKSIRIIKEEWGFNI 183 Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 + ITLST G +P I ++ EE + + LAISLHA +N+LR+ ++PIN++YP+E L+++ Sbjct: 184 GSKHITLSTIGIIPKIYQLAEENLKIRLAISLHASNNELRSKIIPINKEYPIEELLESAF 243 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 +Y RR+TFEYV++K ND DA L+++LKG PA +NLIP+N + SD Sbjct: 244 YYAE-KTGRRVTFEYVLIKNFNDRREDAKELVRLLKGKPAHVNLIPWNKVREYPWETSDL 302 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 KDI F E + SG + +R G I A CGQL++L Sbjct: 303 KDIFRFKEILANSGINVTLRISYGSKIKAGCGQLRAL 339 >gi|320451516|ref|YP_004203612.1| radical SAM enzyme, Cfr family [Thermus scotoductus SA-01] gi|320151685|gb|ADW23063.1| radical SAM enzyme, Cfr family [Thermus scotoductus SA-01] Length = 349 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 140/333 (42%), Positives = 190/333 (57%), Gaps = 21/333 (6%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93 R +QI W+Y RG DF M+D+ + R L + I +V+ S DG+ K+L Sbjct: 18 RKAQIAHWLYARGAMDFSEMTDLPKGFREALAGEWRISEFALVEAYPSRDGSVKYLFTL- 76 Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153 + G + E VY+P ++R T+C+SS VGC C+FC TG RNLTA EIL Q+L Sbjct: 77 ---LDGK-KTEAVYMPYENRKTVCLSSMVGCPAGCTFCATGALGFGRNLTAAEILSQLLA 132 Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213 G P R I N+V+MGMGEPL N NV K++ GL+ S Sbjct: 133 IAHHQGISP--------------RDIRNVVLMGMGEPLLNLGNVLKAIRTMLHPKGLAMS 178 Query: 214 KRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 RRITLST G I R+ EE +GV LA+SLHA ++ R ++P +Y + +++A RH Sbjct: 179 PRRITLSTVGIPKGIHRLAEEDLGVRLALSLHAPDDETRRKIIPTAHRYSVGEILEAVRH 238 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + RR+TFEY +LKG+ND P A L K+LKGI A +NLIPFNPW G + + Sbjct: 239 YYARTK-RRVTFEYTLLKGLNDHPWQARLLAKLLKGISAHVNLIPFNPWEGAPVEGTPKA 297 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I+ F+E ++R G + IR RG D+ AACGQL Sbjct: 298 GILAFAEELRRLGIPTSIRFSRGQDVGAACGQL 330 >gi|257461212|ref|ZP_05626310.1| radical SAM enzyme, Cfr family [Campylobacter gracilis RM3268] gi|257441586|gb|EEV16731.1| radical SAM enzyme, Cfr family [Campylobacter gracilis RM3268] Length = 369 Score = 245 bits (626), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 139/349 (39%), Positives = 203/349 (58%), Gaps = 34/349 (9%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 + R QI++WIY + + DF M ++ +E+R L Q+F + + V + S DG+ K+L Sbjct: 19 KFRAKQIYEWIYKKNVDDFAQMLNLPKEIRQSLAQNFYLDPLKCVRSETSSDGSIKYLF- 77 Query: 92 FPARCIGGPVEIETVYIPEK-------------SRGTLCVSSQVGCSLTCSFCYTGTQKL 138 + IE+V +P K +R ++CVSSQVGC + CSFC T Sbjct: 78 ----ALKDGKTIESVLLPMKDELRDENEKIIRHARYSICVSSQVGCKIGCSFCLTAKGGF 133 Query: 139 VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVK 198 VRNLT EI+ Q+ L + + IP R N+V MGMGEPL N DNV Sbjct: 134 VRNLTPGEIVAQIWLIKKM------------NAIPYERR--VNVVYMGMGEPLNNLDNVA 179 Query: 199 KSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPI 257 K++ I ++ GL+ + RR T+STSG I ++GE ++GV+LAISLHAV ++LR L+PI Sbjct: 180 KAVQILKENDGLAIAPRRQTISTSGLSTQIKKLGEMDLGVLLAISLHAVDDELREKLMPI 239 Query: 258 NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIP 317 NR Y + ++ A R +P + +R+ FEY+M+ G+ND P DA L+K+L GI AK+NLI Sbjct: 240 NRAYNIASIMQAVREFP-IDLRKRVMFEYLMIDGVNDRPSDAKTLVKLLHGIRAKVNLIY 298 Query: 318 FNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 FNP G + ++++ F + + G + IR +GLDI AACGQLK Sbjct: 299 FNPHEGSSFGRPSPENMIKFQDYLCAHGITCTIRQSKGLDISAACGQLK 347 >gi|258406363|ref|YP_003199105.1| ribosomal RNA large subunit methyltransferase N [Desulfohalobium retbaense DSM 5692] gi|257798590|gb|ACV69527.1| radical SAM enzyme, Cfr family [Desulfohalobium retbaense DSM 5692] Length = 359 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 135/354 (38%), Positives = 202/354 (57%), Gaps = 23/354 (6%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 ++L L + G P R R QIW+W++++G F+ M+++S+ +R L+Q F I P Sbjct: 12 DDLAAWLTEQGQP----RFRAEQIWQWLWIKGATSFEDMTNVSKSLRSALSQVFPIALPT 67 Query: 75 IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134 + + S DGTRK+LL + +ETV IP T C+S+QVGC+L C+FC TG Sbjct: 68 VAEVHTSADGTRKFLLNLHDGHV-----LETVLIPGGEHFTQCLSTQVGCNLGCTFCSTG 122 Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194 L RNL+A EI QV++AR+ L G ++ N+V MGMGEPL N+ Sbjct: 123 QMGLTRNLSAAEIAGQVIVARNHLWQ------------TGTGMRLRNLVFMGMGEPLLNW 170 Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNIL 254 +NV +L + ++FS RR+T+ST G + +G LA+SLHA + +LR + Sbjct: 171 ENVDNALDRLIHASAMNFSPRRVTVSTVGVPGTLDALGHSHKASLAVSLHAPNQELREKI 230 Query: 255 VP-INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313 +P R PL L+ R YP ++ +R+T EYV+L G+NDS A L++ L GI K+ Sbjct: 231 MPRAARMLPLPDLLARLRSYP-MAPRQRVTIEYVLLGGVNDSLDQARQLVRCLNGIRCKV 289 Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 NLI FNP PG Y + + ++ F ++ G ++ +R +G DI AACGQLK+ Sbjct: 290 NLIAFNPCPGLPYSAPETEQVLAFETLLRDKGLTATLRKSKGQDISAACGQLKT 343 >gi|331269682|ref|YP_004396174.1| radical SAM enzyme, Cfr family [Clostridium botulinum BKT015925] gi|329126232|gb|AEB76177.1| radical SAM enzyme, Cfr family [Clostridium botulinum BKT015925] Length = 343 Score = 244 bits (624), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 134/337 (39%), Positives = 195/337 (57%), Gaps = 25/337 (7%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE-KISCDGTRKWLL 90 + R QI++WIY + I +F M++IS+ + L F I P I+++ K + DGT K+L Sbjct: 23 KFRAKQIFEWIYKKAIFNFDEMTNISKASKEKLKNSFYIEIPNIMEKYKSNIDGTEKFLF 82 Query: 91 RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150 + I IE+V + K ++CVS+Q+GC + C FC + +VRNLT+ EI Q Sbjct: 83 EYKDGNI-----IESVVMRYKHGNSICVSTQIGCRMGCKFCASTVDGVVRNLTSGEIAAQ 137 Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210 +L A+ +G +ISN+V+MG GEPL N+DNV K + + +D L Sbjct: 138 ILKAQQ-----------------EIGERISNVVLMGSGEPLDNYDNVLKFIKLINDDNAL 180 Query: 211 SFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 +R ITLST G VP I + +E + + LAISLHA ++D+R ++P+ KY + L+DA Sbjct: 181 KIGQRHITLSTCGIVPKIKELADEKLQITLAISLHAPNDDIRKSMMPVANKYNINELLDA 240 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 C++Y ++N RRITFEY ++ GINDS ++A L LKGI INLIP N +Y S Sbjct: 241 CKYYSKITN-RRITFEYALVNGINDSAKNAEELFNQLKGILCHINLIPVNEIKENDYKRS 299 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 KDI F + + G + IR G DI ACGQL+ Sbjct: 300 GAKDIEEFKNILNKYGIETTIRREMGSDINGACGQLR 336 >gi|20807945|ref|NP_623116.1| Fe-S-cluster redox protein [Thermoanaerobacter tengcongensis MB4] gi|81590646|sp|Q8R9T4|RLMN_THETN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|20516515|gb|AAM24720.1| predicted Fe-S-cluster redox enzyme [Thermoanaerobacter tengcongensis MB4] Length = 342 Score = 244 bits (624), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 145/361 (40%), Positives = 205/361 (56%), Gaps = 30/361 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L M EE+EE + +G + R Q++KWIY + + DF M+DIS+ +R L + Sbjct: 3 NLKDMTLEEMEEFFVNLG----ESKFRAKQLYKWIYDKRVTDFDLMTDISKNLRAKLKEI 58 Query: 68 FSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I +I++ ++S D T K+L + I IE V I K T CVS+QVGC++ Sbjct: 59 AYISELKIIERRVSQIDDTVKYLFLLEDKNI-----IEGVAIKYKFGNTACVSTQVGCNM 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC + VR+L A E++ QV M I S KISNIV+MG Sbjct: 114 KCKFCASAIGGKVRDLKASEMVDQV------------------MAIDSDYGKISNIVLMG 155 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHA 245 GEP N+D V K + I ++ GL KR IT+ST G VP I + EE+ V L+ISLHA Sbjct: 156 SGEPFDNYDEVMKFIKIVNNPYGLKIGKRHITISTVGIVPKIYQFADEELQVNLSISLHA 215 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +N+LRN L+PINR YPLE L+ ACR+Y +N RRITFEY ++ G+ND A L+ + Sbjct: 216 PNNELRNELMPINRAYPLEELMKACRYYIEKTN-RRITFEYALIDGVNDKKEHAYQLVDL 274 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG+ +NLIP N + S+ + ++ F + I+ +G + +R G DI AACGQL Sbjct: 275 LKGMLCHVNLIPINYVKEIGFRKSNNEKVMMFKKIIENAGITCTVRRELGSDIEAACGQL 334 Query: 366 K 366 + Sbjct: 335 R 335 >gi|213421342|ref|ZP_03354408.1| hypothetical protein Salmonentericaenterica_27889 [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 317 Score = 244 bits (624), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 139/322 (43%), Positives = 187/322 (58%), Gaps = 22/322 (6%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 +N K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ + Sbjct: 16 LNNETKINLLDLNRQQMREFFKNLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVL 71 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L + I PE+V+E+ S DGT KW + G +ETVYIPE R TLCVSS Sbjct: 72 RGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSS 125 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC+L C FC T Q RNL EI+ QV A ++G + G R I+ Sbjct: 126 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVTGQ------RPIT 175 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LA Sbjct: 176 NVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALA 235 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRD 298 ISLHA ++ +R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND Sbjct: 236 ISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEH 295 Query: 299 ALNLIKILKGIPAKINLIPFNP 320 A L ++LK P KINLIP+NP Sbjct: 296 AHQLAELLKETPCKINLIPWNP 317 >gi|18406673|ref|NP_564755.1| radical SAM domain-containing protein [Arabidopsis thaliana] gi|15451230|gb|AAK96886.1| Unknown protein [Arabidopsis thaliana] gi|20148295|gb|AAM10038.1| unknown protein [Arabidopsis thaliana] gi|332195547|gb|AEE33668.1| radical SAM domain-containing protein [Arabidopsis thaliana] Length = 458 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 141/380 (37%), Positives = 212/380 (55%), Gaps = 29/380 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGI--RDFQGMSDISQEVRH 62 +K L GM L+E + G M +WK +Y I + + ++++++ Sbjct: 93 QKVVLKGMTYASLQEWVQSHGFRPGQALM----LWKRLYKDNIWANNVDELEGLNKDLKR 148 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQ 121 ++++H D + + DGTRK L + IETV IP ++ R T+CVSSQ Sbjct: 149 MISEHAEFGALSFKDIRSASDGTRKILFTLDDGLV-----IETVVIPCDRGRTTVCVSSQ 203 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC++ C FCYTG L RNLT EI+ Q + AR LL G I+N Sbjct: 204 VGCAMNCQFCYTGRMGLKRNLTTAEIVEQAVYARRLLSHEVG--------------SITN 249 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 +V MGMGEP N DNV K+ +I D GL FS R++T+STSG VP + R E LA+ Sbjct: 250 VVFMGMGEPFHNIDNVIKAANIMVDENGLHFSPRKVTVSTSGLVPQLKRFLRESNCALAV 309 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SL+A ++++RN ++PINRKY L +L++ R + ++ FEYVML G+NDS DA Sbjct: 310 SLNATTDEVRNWIMPINRKYKLSLLLETLREGLSSRHKYKVLFEYVMLAGVNDSMDDARR 369 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L+++++GIP KINLI FNP G +++ +++ ++ F + G + +R RG D +AA Sbjct: 370 LVELVQGIPCKINLIQFNPHSGSQFIQTEEDKMIKFRNVLAEGGCTVLMRFSRGNDQMAA 429 Query: 362 CGQL---KSLSKRIPKVPRQ 378 CGQL ++ + +VP Q Sbjct: 430 CGQLGMIGAVQAPVMRVPEQ 449 >gi|303246742|ref|ZP_07333019.1| radical SAM enzyme, Cfr family [Desulfovibrio fructosovorans JJ] gi|302491759|gb|EFL51639.1| radical SAM enzyme, Cfr family [Desulfovibrio fructosovorans JJ] Length = 350 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 138/360 (38%), Positives = 204/360 (56%), Gaps = 22/360 (6%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +LI + ELE ++ +G P R Q+W+W++ +G RD M+D+S+ +R L + Sbjct: 3 NLIDLTFHELEALIVSLGEPPYRAR----QVWQWLWQKGCRDIGRMTDVSKALRSRLGEV 58 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 +I +P+++ S DGT K+LL + +E V IPEK T C+S+QVGC++ Sbjct: 59 ATIAWPDVLRVSESADGTVKFLL-----GLSDGEAVECVLIPEKDHYTACLSTQVGCAMG 113 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC TG RN+T E+L QVL+AR L D +G + + N+V MGM Sbjct: 114 CGFCATGMLGFRRNMTPGEMLGQVLVARQYLLD-------KGEAL-----ALRNLVFMGM 161 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL N+DN+ K+L GL FS RRIT+ST+G N+ +G LA+SLHA + Sbjct: 162 GEPLLNYDNLVKTLEALHHPQGLDFSGRRITVSTAGVRRNLLELGRTGLCSLAVSLHAPT 221 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 + R ++P K PL L+ R YP L R+TFEY++L G+ND+ DA L+++L Sbjct: 222 QEKRARIMPGAAKLPLSELMGILREYP-LKPRERLTFEYLLLDGVNDADADARELVRLLS 280 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 + AK+NLI +N PG + + F E +K G ++ IR +G DI AACGQL++ Sbjct: 281 TVKAKVNLIVYNATPGLPFRQPAAGRVAAFQEILKAKGITATIRKSKGADIAAACGQLRA 340 >gi|3249072|gb|AAC24056.1| Contains similarity to hypothetical 43.1 KD protein in NDK-GCPE intergenic region gb|493519 from E. coli sequence gb|U02965 [Arabidopsis thaliana] Length = 454 Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 141/380 (37%), Positives = 212/380 (55%), Gaps = 29/380 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGI--RDFQGMSDISQEVRH 62 +K L GM L+E + G M +WK +Y I + + ++++++ Sbjct: 89 QKVVLKGMTYASLQEWVQSHGFRPGQALM----LWKRLYKDNIWANNVDELEGLNKDLKR 144 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQ 121 ++++H D + + DGTRK L + IETV IP ++ R T+CVSSQ Sbjct: 145 MISEHAEFGALSFKDIRSASDGTRKILFTLDDGLV-----IETVVIPCDRGRTTVCVSSQ 199 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC++ C FCYTG L RNLT EI+ Q + AR LL G I+N Sbjct: 200 VGCAMNCQFCYTGRMGLKRNLTTAEIVEQAVYARRLLSHEVG--------------SITN 245 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 +V MGMGEP N DNV K+ +I D GL FS R++T+STSG VP + R E LA+ Sbjct: 246 VVFMGMGEPFHNIDNVIKAANIMVDENGLHFSPRKVTVSTSGLVPQLKRFLRESNCALAV 305 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SL+A ++++RN ++PINRKY L +L++ R + ++ FEYVML G+NDS DA Sbjct: 306 SLNATTDEVRNWIMPINRKYKLSLLLETLREGLSSRHKYKVLFEYVMLAGVNDSMDDARR 365 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L+++++GIP KINLI FNP G +++ +++ ++ F + G + +R RG D +AA Sbjct: 366 LVELVQGIPCKINLIQFNPHSGSQFIQTEEDKMIKFRNVLAEGGCTVLMRFSRGNDQMAA 425 Query: 362 CGQL---KSLSKRIPKVPRQ 378 CGQL ++ + +VP Q Sbjct: 426 CGQLGMIGAVQAPVMRVPEQ 445 >gi|297837501|ref|XP_002886632.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297332473|gb|EFH62891.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp. lyrata] Length = 458 Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 141/380 (37%), Positives = 212/380 (55%), Gaps = 29/380 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGI--RDFQGMSDISQEVRH 62 +K L GM L+E + G M +WK +Y I + + ++++++ Sbjct: 93 QKVILKGMTYAALQEWVQSHGFRPGQALM----LWKRLYKDNIWANNVDELEGLNKDLKR 148 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQ 121 ++++H D + + DGTRK L + IETV IP ++ R T+CVSSQ Sbjct: 149 MISEHAEFGALSFKDIRSASDGTRKILFTLDDGLV-----IETVVIPCDRGRTTVCVSSQ 203 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC++ C FCYTG L RNLT EI+ Q + AR LL G I+N Sbjct: 204 VGCAMNCQFCYTGRMGLKRNLTTAEIVEQAVYARRLLSHEVG--------------SITN 249 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 +V MGMGEP N DNV K+ +I D GL FS R++T+STSG VP + R E LA+ Sbjct: 250 VVFMGMGEPFHNIDNVIKAANIMVDENGLHFSPRKVTVSTSGLVPQLKRFLRESNCALAV 309 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SL+A ++++RN ++PINRKY L +L++ R + ++ FEYVML G+NDS DA Sbjct: 310 SLNATTDEVRNWIMPINRKYKLSLLLETLREGLSSKHKYKVLFEYVMLAGVNDSMDDARR 369 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L+++++GIP KINLI FNP G +++ +++ ++ F + G + +R RG D +AA Sbjct: 370 LVELVQGIPCKINLIQFNPHSGSQFIQTEEDKMIKFRNVLAEGGCTVLMRFSRGNDQMAA 429 Query: 362 CGQL---KSLSKRIPKVPRQ 378 CGQL ++ + +VP Q Sbjct: 430 CGQLGMIGAVQAPVMRVPEQ 449 >gi|114775703|ref|ZP_01451271.1| hypothetical protein SPV1_05223 [Mariprofundus ferrooxydans PV-1] gi|114553814|gb|EAU56195.1| hypothetical protein SPV1_05223 [Mariprofundus ferrooxydans PV-1] Length = 364 Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 138/341 (40%), Positives = 197/341 (57%), Gaps = 11/341 (3%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 + R Q+ W +GI + M +I +R L ++ + S DGTRK++ Sbjct: 34 KFRAKQVLDWCN-KGILNPALMKNIPDALRDRLLTSLMCEPLRLIRRECSTDGTRKYVFA 92 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 + G + IE V+IPE+ RGT+C+SSQVGC L C FC+TGTQ NL+A EI+ QV Sbjct: 93 LNRPRLAGKM-IEAVFIPEEKRGTVCISSQVGCVLDCPFCHTGTQGFEGNLSAGEIVAQV 151 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 L ++ L P +D+ +++IV MGMGEPL N + V SL+I D GL Sbjct: 152 LAIKADLRHEPMTDDLHN--------DVTHIVYMGMGEPLANEEGVHGSLAILMDEDGLK 203 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S+RRIT+STSG P I R+G V LAISLH+ ++ R++LVPINRK+PL L + Sbjct: 204 LSRRRITVSTSGLTPQIERLGAVHPVNLAISLHSAIDEKRDLLVPINRKHPLAQLRECLD 263 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 YP L+ R IT EYV+L G+ND D L + + +NLI FNP+PG Y + + Sbjct: 264 AYP-LATQRHITLEYVLLDGVNDQAEDLAALARFVNPEREWVNLIQFNPYPGTSYRGTAK 322 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRI 372 + + F++ + G + +R RG DI+AACGQLK+ +K + Sbjct: 323 ESMNQFAQHLISKGIRATVRRSRGQDIMAACGQLKADTKGV 363 >gi|118475734|ref|YP_892923.1| radical SAM protein [Campylobacter fetus subsp. fetus 82-40] gi|261886280|ref|ZP_06010319.1| ribosomal RNA large subunit methyltransferase N [Campylobacter fetus subsp. venerealis str. Azul-94] gi|205829691|sp|A0RRU0|RLMN_CAMFF RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|118414960|gb|ABK83380.1| radical SAM enzyme, Cfr family [Campylobacter fetus subsp. fetus 82-40] Length = 354 Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 142/353 (40%), Positives = 204/353 (57%), Gaps = 34/353 (9%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 + R QI++W+Y + R F M++IS++VR L F + V + S DG+ K+L + Sbjct: 19 KFRAKQIYEWVYKKNARSFDEMTNISKDVRENLKSEFYLDPLTCVRSETSKDGSIKYLFK 78 Query: 92 FPARCIGGPVEIETVYIPEK-------------SRGTLCVSSQVGCSLTCSFCYTGTQKL 138 G IE+V +P K +R T+CVSSQVGC + CSFC T Sbjct: 79 LT----DGKT-IESVLLPMKEEISSEDGSVERHARYTICVSSQVGCKMGCSFCLTAKGGF 133 Query: 139 VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVK 198 VRNL+A EI+ Q+L + IP R N+V MGMGEPL N NV Sbjct: 134 VRNLSAGEIVAQILWIK------------RENNIPYERR--VNVVYMGMGEPLDNLTNVS 179 Query: 199 KSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPI 257 K++SI D+ GL+ RR T+STSG I ++GE ++GV+LAISLHAV+++LR L+PI Sbjct: 180 KAVSILKDNDGLAIGARRQTISTSGLASQIKKLGELDLGVLLAISLHAVTDELRAKLMPI 239 Query: 258 NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIP 317 N+ Y + ++DA R +P + +R+ FEY+++ +ND+ DA L+K+L GI AK+NLI Sbjct: 240 NKAYNIAAVMDAVRAFP-IDMRKRVMFEYLIMDKVNDNLSDAKALVKLLHGIKAKVNLIL 298 Query: 318 FNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 FNP G +Y +++ F ++ G + IR +GLDI AACGQLK SK Sbjct: 299 FNPHEGSQYQRPSIENVDNFRTYLQSRGVTCTIRQSKGLDISAACGQLKERSK 351 >gi|78358007|ref|YP_389456.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|123727640|sp|Q30X35|RLMN_DESDG RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|78220412|gb|ABB39761.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 358 Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 145/367 (39%), Positives = 211/367 (57%), Gaps = 33/367 (8%) Query: 9 LIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 ++ + EELE L+ K+G + R QIW+W++ + +RDF M+++S++ R L +H Sbjct: 4 ILNLTFEELETFLVEKLG----EKKFRARQIWQWLWNKYVRDFDQMTNVSKQTRAQLKEH 59 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSL 126 I +PE+V S DGT K+LLR + +ETV IP + R T C+S QVGC++ Sbjct: 60 ARIFWPEVVTTSKSQDGTTKFLLRLADGAL-----VETVLIPGSQGRITQCLSCQVGCAM 114 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK--ISNIVM 184 C+FC TGT RN+T EIL QVL+AR L D V + + N+V Sbjct: 115 GCTFCATGTLGFERNMTMSEILGQVLVAREYLND--------------VAERPILRNLVF 160 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN-IARVGEEIGVMLAISL 243 MGMGEPL N D + +SL + +GL FS RRIT+ST G P + R+GE LA+SL Sbjct: 161 MGMGEPLLNLDEIMRSLHTLNSELGLQFSPRRITVSTCGVNPEGLRRLGESGLAYLAVSL 220 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA + +LR ++P ++ L I+A + YP L RITFEY++L G+NDS A L+ Sbjct: 221 HAPTQELRRTIMPKAARWELNDFIEALQSYP-LKTRERITFEYLLLGGVNDSLEHAKQLV 279 Query: 304 KILKGIPAKINLIPFNPWPGCE---YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 +++ AK+NLI +NP G E Y ++ I+ F + + ++ IR +G DI A Sbjct: 280 RLVSRTKAKLNLIVYNP-SGDEADPYAAPTEERILAFEQYLWSKHVTAIIRKSKGADIKA 338 Query: 361 ACGQLKS 367 ACGQLK+ Sbjct: 339 ACGQLKA 345 >gi|254479559|ref|ZP_05092874.1| radical SAM enzyme, Cfr family [Carboxydibrachium pacificum DSM 12653] gi|214034497|gb|EEB75256.1| radical SAM enzyme, Cfr family [Carboxydibrachium pacificum DSM 12653] Length = 336 Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 144/357 (40%), Positives = 203/357 (56%), Gaps = 30/357 (8%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 M EE+EE + +G + R Q++KWIY + + DF M+DIS+ +R L + I Sbjct: 1 MTLEEMEEFFVNLG----ESKFRAKQLYKWIYDKRVTDFDLMTDISKNLRAKLKEIAYIS 56 Query: 72 YPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130 +I++ ++S D T K+L + I IE V I K T CVS+QVGC++ C F Sbjct: 57 ELKIIERRVSQIDDTVKYLFLLEDKNI-----IEGVAIKYKFGNTACVSTQVGCNMKCKF 111 Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 C + VR+L A E++ QV M I S KISNIV+MG GEP Sbjct: 112 CASAIGGKVRDLKASEMVDQV------------------MAIDSDYGKISNIVLMGSGEP 153 Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSND 249 N+D V K + I ++ GL KR IT+ST G VP I + EE+ V L+ISLHA +N+ Sbjct: 154 FDNYDEVMKFIKIVNNPYGLKIGKRHITISTVGIVPKIYQFADEELQVNLSISLHAPNNE 213 Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309 LRN L+PINR YPLE L+ ACR+Y +N RRITFEY ++ G+ND A L+ +LKG+ Sbjct: 214 LRNELMPINRAYPLEELMKACRYYIEKTN-RRITFEYALIDGVNDKKEHAYQLVDLLKGM 272 Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +NLIP N + S+ + ++ F + I+ +G + +R G DI AACGQL+ Sbjct: 273 LCHVNLIPINYVKEIGFRKSNNEKVMMFKKIIENAGITCTVRRELGSDIEAACGQLR 329 >gi|242310237|ref|ZP_04809392.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] gi|239523534|gb|EEQ63400.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] Length = 346 Score = 243 bits (621), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 143/365 (39%), Positives = 208/365 (56%), Gaps = 28/365 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K+++ G+ EEL ++L G P + R QI+ W+YVR +F M ++ + +R Sbjct: 1 MDKKNIFGLTLEELTQSL--NGFP----KFRAKQIYHWLYVRYENNFDKMENLPKNLREF 54 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-SRGTLCVSSQV 122 L Q F+ I ++ S DG+ K+L R + E V++ K + TLC+SSQ+ Sbjct: 55 LKQDFTGDLVSIAKKEQSSDGSVKYLFR-----TADNLTYEAVFLKMKEDKFTLCLSSQI 109 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + CSFC T VRNL+A E++ QV + + IPS K NI Sbjct: 110 GCKVGCSFCLTAKGGFVRNLSAGEMVYQVFAIK------------KDQNIPS--NKAVNI 155 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241 V MGMGEPL N +NV K + I S+ GLS S+RR T+STSG P I ++G +GV LAI Sbjct: 156 VYMGMGEPLDNLENVSKCIQILSELDGLSISRRRQTISTSGIAPKIKKLGALNLGVQLAI 215 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHAV ++LR L+PIN+ Y ++ +ID +P + +R+ FEY+M+ +NDS A Sbjct: 216 SLHAVDDELRTKLMPINKAYNIQSVIDEVAIFP-IDTRKRVMFEYLMIDEVNDSLECAKK 274 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L+ +L I AK+NLI FNP G Y +++ + F E + + G IR +GLDI AA Sbjct: 275 LVALLNKIKAKVNLIYFNPHEGSPYKRPNKEKVEAFREFLLKKGLLCTIRESKGLDISAA 334 Query: 362 CGQLK 366 CGQL+ Sbjct: 335 CGQLR 339 >gi|330975900|gb|EGH75966.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 261 Score = 243 bits (620), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 124/268 (46%), Positives = 170/268 (63%), Gaps = 19/268 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ ++E+E+ IG R R Q+ KWI+ G+ DF M+++S+ +R L Sbjct: 7 KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 63 ACAEVRGPEVVSEDISSDGTRKWVVRVESGSC-----VETVYIPQGKRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV +A G P +V R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPA----------TVDRAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY 273 ++ LRN LVP+N+KYPL++L+++CR Y Sbjct: 228 PNDALRNQLVPLNKKYPLKVLLESCRRY 255 >gi|301632243|ref|XP_002945200.1| PREDICTED: ribosomal RNA large subunit methyltransferase N-like [Xenopus (Silurana) tropicalis] Length = 328 Score = 243 bits (619), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 139/320 (43%), Positives = 187/320 (58%), Gaps = 24/320 (7%) Query: 53 MSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS 112 MSD+++ +R L I ++ E+ S DGT KWL +GG +ETV+IPE Sbjct: 1 MSDLAKSLREKLQDRACITGLPVLTEQASADGTVKWLFD-----VGGGNAVETVFIPEDD 55 Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172 RGTLCVSSQ GC++ C FC TG Q RNL+ EIL Q+ A L G + Sbjct: 56 RGTLCVSSQAGCAVGCRFCSTGHQGFSRNLSTGEILAQLWYAEHHLRQRLGSSE------ 109 Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232 R ISN+VMMGMGEPL N+ + +L + D G S+RR+T+STSG VP + R+ Sbjct: 110 ----RVISNVVMMGMGEPLQNYAALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMERLA 165 Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLK 290 + V LA+SLHA ++ LR+ LV +NRKYPLE L+ C Y L +A R ITFEY ML Sbjct: 166 LDCPVALAVSLHAPNDALRDHLVSLNRKYPLEELLQTCVRY--LDHAPRDFITFEYCMLD 223 Query: 291 GINDSPRDALNLIKILKG-----IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSG 345 G+ND P A LI++++G + K NLIPFNP+P + S + + F+ + +G Sbjct: 224 GVNDQPEHAQQLIQLVRGHAQGKVWCKFNLIPFNPFPESGLVRSPPQRVSGFARLLSDAG 283 Query: 346 YSSPIRTPRGLDILAACGQL 365 + +R RG DI AACGQL Sbjct: 284 IVTTVRKTRGDDIDAACGQL 303 >gi|212704175|ref|ZP_03312303.1| hypothetical protein DESPIG_02230 [Desulfovibrio piger ATCC 29098] gi|212672379|gb|EEB32862.1| hypothetical protein DESPIG_02230 [Desulfovibrio piger ATCC 29098] Length = 357 Score = 242 bits (618), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 136/341 (39%), Positives = 195/341 (57%), Gaps = 22/341 (6%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 + R Q+W+WI+ + RDF M+++S+ R L Q I +PEIV + S D T K+LLR Sbjct: 24 KFRAVQVWQWIWQKMARDFDAMTNVSKACRERLAQCAEIRWPEIVTVEQSSDDTTKFLLR 83 Query: 92 FPARCIGGPVEIETVYIPEKSR-----GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEE 146 + E+ETV IP SR T C+SSQVGC++ C+FC TGT RN+T E Sbjct: 84 -----LQDGAEVETVLIPSDSREGVRRWTQCLSSQVGCAMACTFCSTGTMGFERNMTMGE 138 Query: 147 ILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD 206 IL Q+L+AR LGD + + N+V MGMGEPL N NV ++L ++ Sbjct: 139 ILGQILVAREHLGDTRPDWPV-----------LRNLVFMGMGEPLLNLKNVMRALESLNN 187 Query: 207 SMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEML 266 GL+FS RRIT+ST G + +GE LA+SLHA + +LR ++P ++PLE L Sbjct: 188 DKGLNFSPRRITVSTCGIEKGLRELGESGLAYLAVSLHAPTQELRARIMPKAARWPLEDL 247 Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 + A + YP L RITFEY++L G+ND A L +++ + K+NLI +NP G Y Sbjct: 248 LQALKSYP-LKTRERITFEYLLLGGVNDGLEQARQLARVVSDVKGKLNLIVYNPSEGDPY 306 Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 + ++ F + + ++ IR +G DI AACGQLK+ Sbjct: 307 KAPSPERVLAFEQYLWDRNITAIIRKSKGQDIKAACGQLKA 347 >gi|75376338|sp|Q6XK03|RLMN_SPICI RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|34396189|gb|AAP55653.1| unknown [Spiroplasma citri] gi|110005241|emb|CAK99567.1| conserved hypothetical upf0063 transmembrane protein [Spiroplasma citri] Length = 345 Score = 242 bits (618), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 137/361 (37%), Positives = 214/361 (59%), Gaps = 27/361 (7%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 S+ G +EEL+ L+ G + QI+ WIYV+ I F M++IS+ R+ L ++ Sbjct: 3 SIFGYPKEELQLDLVAHGFK----KYLAEQIFDWIYVKNIYSFDEMTNISKTDRNKLQEY 58 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 ++I +IV ++ S D T K+L + + +IETV +P+ ++CV++QVGC++ Sbjct: 59 YTIEPLKIVVQQQSKDWTVKFLFQ-----LADGYKIETVLMPQSYGNSVCVTTQVGCNMA 113 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C+FC +G K RNL+ EI+ QV++ L + ++S+IV+MG+ Sbjct: 114 CTFCASGLLKKTRNLSTAEIVQQVMMVNRYLA--------------TTNERVSHIVVMGI 159 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAV 246 GEP NFDN K ++I +D G R IT+ST G VP I + E + V LAISLHA Sbjct: 160 GEPFDNFDNTLKFVNIINDPKGYQIGARHITISTCGLVPKIKQFAELKTQVNLAISLHAP 219 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 +N +RN L+PIN+ YP+E L+DA R+Y L+N RR+TFEY++++ +NDS AL L K++ Sbjct: 220 NNTIRNQLMPINKAYPVEKLMDAVRYYIELTN-RRVTFEYILIENVNDSRETALELAKLI 278 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +G+ A +NLIP+N + S + I F E +++ + +R G DI AACGQL+ Sbjct: 279 RGLNAYVNLIPYNTVAENGHQRSTK--INKFFETLQQQKINCIVRREFGHDIDAACGQLR 336 Query: 367 S 367 + Sbjct: 337 A 337 >gi|15605915|ref|NP_213292.1| hypothetical protein aq_416 [Aquifex aeolicus VF5] gi|81556300|sp|O66732|RLMN_AQUAE RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|2983096|gb|AAC06702.1| hypothetical protein aq_416 [Aquifex aeolicus VF5] Length = 348 Score = 242 bits (618), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 138/366 (37%), Positives = 211/366 (57%), Gaps = 32/366 (8%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 EEL++ ++G+ R Q+++W+Y + + DF+ M+D+ ++ R LL +HF+ E Sbjct: 10 EELKKRFTELGLEP----YRAKQVFRWVYKKFVTDFEKMTDLGKKHRELLKEHFAFHPLE 65 Query: 75 IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134 +D ++ K+L + I +ETV I E+ TLCVSSQ+GC++ C+FC T Sbjct: 66 KLD-RVEAPDAVKYLFKTKDGHI-----LETVLIKERDHYTLCVSSQIGCAVGCTFCATA 119 Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194 L RNL+ EI+ Q L + LG+ KI N+V MGMGEPL N+ Sbjct: 120 LDGLKRNLSTAEIIDQYLQVQQDLGE----------------EKIRNVVFMGMGEPLANY 163 Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE---IGVMLAISLHAVSNDLR 251 +NV+K++ I GL SKRRIT+STSG V I R+ ++ V LA+SL+AVS R Sbjct: 164 ENVRKAVEIMVSPEGLDLSKRRITISTSGIVAQIKRMAQDPVMKEVNLAVSLNAVSQKKR 223 Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--KGI 309 L+P+ + LE L++ ++YP L RRIT EYV++KG+NDSP DA L K++ Sbjct: 224 EELMPLTKTNTLEELMEVLKNYP-LPKYRRITLEYVLIKGVNDSPNDAERLAKLIGRHKK 282 Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369 K+NLIPFNP P Y DI+ F + + + G S+ +R +G+++ ACGQL++ Sbjct: 283 KFKVNLIPFNPDPNLPYERPALTDIMKFQKVLWKYGISNFVRFSKGVEVFGACGQLRTQR 342 Query: 370 KRIPKV 375 ++ +V Sbjct: 343 LQLQRV 348 >gi|218295831|ref|ZP_03496611.1| radical SAM enzyme, Cfr family [Thermus aquaticus Y51MC23] gi|218243569|gb|EED10097.1| radical SAM enzyme, Cfr family [Thermus aquaticus Y51MC23] Length = 349 Score = 242 bits (618), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 137/333 (41%), Positives = 193/333 (57%), Gaps = 21/333 (6%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93 R +QI W++ RG+ DF M+D+ + +R L + + + ++V+ S DG+ K+L Sbjct: 18 RKAQIAHWVFARGVLDFAEMTDLPKGLREALAREWRVSEFQLVEAYPSKDGSVKYLFTL- 76 Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153 + G + E VY+P K+R T+C+SS VGC C+FC TG RNLTA EIL Q+L Sbjct: 77 ---LDGK-KTEAVYMPYKNRKTVCLSSMVGCPAGCTFCATGALGFGRNLTAAEILSQLLA 132 Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213 G P R+I N+V+MGMGEPL N NV K++ + L+ S Sbjct: 133 IAHHQGLSP--------------REIRNVVLMGMGEPLLNLTNVLKAIRVMLHPKALAMS 178 Query: 214 KRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 RRITLST G I R+ EE +GV LA+SLHA ++ R ++P +YP+ ++ A R Sbjct: 179 PRRITLSTVGIPRGILRLAEEDVGVRLALSLHAPDDETRRKIIPTAHRYPIAEIMAAVRR 238 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + RR+TFEY +LKG+ND A L K+LKGI A +NLIPFNPW + + Sbjct: 239 YYERTK-RRVTFEYTLLKGLNDHLWQARLLAKLLKGISAHVNLIPFNPWENAPVEGTPKA 297 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I+ F+E ++R G S+ IR RG D+ AACGQL Sbjct: 298 GILAFAEELRRLGVSTSIRWSRGRDVGAACGQL 330 >gi|168186788|ref|ZP_02621423.1| radical SAM enzyme, Cfr family [Clostridium botulinum C str. Eklund] gi|169295142|gb|EDS77275.1| radical SAM enzyme, Cfr family [Clostridium botulinum C str. Eklund] Length = 343 Score = 242 bits (617), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 136/337 (40%), Positives = 197/337 (58%), Gaps = 25/337 (7%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE-KISCDGTRKWLL 90 + R QI++WIY + + +F M++IS+ + L ++F I P ++ + K + DGT K+L Sbjct: 23 KFRAKQIFQWIYKKAVFNFDDMTNISKGTKEKLKENFCIQIPNVIKKYKSNIDGTEKFLF 82 Query: 91 RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150 + I IE+V + K ++CVS+Q+GC + C FC + +VRNLT+ EI+ Q Sbjct: 83 EYEDGNI-----IESVVMKYKHGNSICVSTQIGCRMGCKFCASTVDGVVRNLTSGEIIAQ 137 Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210 VL A+ + D +ISN+V+MG GEPL N+DNV K L + + L Sbjct: 138 VLKAQKEIDD-----------------RISNVVLMGSGEPLDNYDNVLKFLKLINHDDTL 180 Query: 211 SFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 +R ITLST G VP I + +E + + LAISLHA +N++R ++PI KY L+ L++ Sbjct: 181 KIGQRHITLSTCGVVPKIKELADEKMQITLAISLHAPNNEIRKSMMPIASKYTLDELLET 240 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 CR+Y +N RRITFEY ++KG+NDS +A LIK LKG+ INLIP N Y S Sbjct: 241 CRYYYITTN-RRITFEYALVKGVNDSRENAEELIKKLKGMLCHINLIPVNEIKENNYERS 299 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 KDI F E + + G + IR G DI ACGQL+ Sbjct: 300 KSKDIEEFKETLIKYGIETTIRREMGSDINGACGQLR 336 >gi|38175091|dbj|BAD01056.1| hypothetical protein [Pseudomonas putida] Length = 284 Score = 242 bits (617), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 127/268 (47%), Positives = 166/268 (61%), Gaps = 19/268 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ + E+E+ IG R R Q+ KWI+ G+ DF M+++ + +R L Sbjct: 7 KINLLGLTQPEMEQFFDSIG----EKRFRAGQVMKWIHHFGVSDFAAMTNVGKVLREKLE 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I PE+V E IS DGTRKW++R + +ETVYIP RGTLCVSSQ GC+ Sbjct: 63 AVAEIRPPEVVSEDISADGTRKWVIRVASGSC-----VETVYIPTDDRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV LA G P V R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWLANKSFGTVPA----------KVDRAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ I D +G SKRR+TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVIAAMKIMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY 273 +++LRN LVPIN+KYPL+ML+++C Y Sbjct: 228 PNDELRNKLVPINKKYPLKMLLESCMGY 255 >gi|303272039|ref|XP_003055381.1| predicted protein [Micromonas pusilla CCMP1545] gi|226463355|gb|EEH60633.1| predicted protein [Micromonas pusilla CCMP1545] Length = 430 Score = 242 bits (617), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 152/374 (40%), Positives = 213/374 (56%), Gaps = 32/374 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRG--IRDFQGMSDISQEVR 61 L K SL GM +LE L +IG R +Q++ W+Y G + D + M+D+S R Sbjct: 51 LAKVSLKGMRYADLERWLAEIG----EKPSRATQVFNWMYRPGKLVADVRDMADVSAAFR 106 Query: 62 HLLNQHFSIIYP-EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK---SRGTLC 117 L ++ E+ D + S DGT+K A GG V +E+V IP R T+C Sbjct: 107 EKLASLATVDGDLEMRDVRTSADGTKKVTY---ALANGGGV-VESVIIPSNVPGGRTTVC 162 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 VSSQ+GC++ C FC+T L RNLTA +I+ QV+ AR L D E Sbjct: 163 VSSQLGCAMNCQFCFTAKMGLRRNLTAAQIVEQVVHARRL-----AEADDEAS------- 210 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 SN+V MGMGEPL N D V ++ + D GL FSK ++T+STSG VP I R E Sbjct: 211 --SNVVFMGMGEPLHNIDAVLAAVDVLLDDRGLGFSKNKVTVSTSGLVPEIERYLAESQG 268 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACR-HYP---GLSNARRITFEYVMLKGIN 293 LA+SL+A ++++R+ ++PINRKY LE L+ A R ++P G + R + FEY+ML+G+N Sbjct: 269 SLAVSLNATTDEIRSWIMPINRKYNLERLLGALRANFPRRDGGRHQREVFFEYIMLEGVN 328 Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353 DS DA L+ I + +P K NLI FN G E+ CSD++ I+ F + + +G + IR Sbjct: 329 DSAEDADRLVAIARTLPCKFNLIYFNTHDGSEFRCSDRETILAFRDRVVAAGVTCTIRQS 388 Query: 354 RGLDILAACGQLKS 367 RG + AACGQL S Sbjct: 389 RGDEEAAACGQLGS 402 >gi|157164532|ref|YP_001467818.1| radical SAM protein [Campylobacter concisus 13826] gi|205829689|sp|A7ZGB0|RLMN_CAMC1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|112801745|gb|EAT99089.1| radical SAM enzyme, Cfr family [Campylobacter concisus 13826] Length = 381 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 141/348 (40%), Positives = 210/348 (60%), Gaps = 34/348 (9%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R +QI++W+Y + +F M ++ +++R L + F + + V + S DG+ K+L Sbjct: 20 FRATQIYEWVYKKNATEFSQMLNLPKDMRQDLAEKFYLDPLKCVKFEQSSDGSIKYLFE- 78 Query: 93 PARCIGGPVEIETVYIPEK-------------SRGTLCVSSQVGCSLTCSFCYTGTQKLV 139 + ++IE+V +P K +R T+CVSSQVGC + C+FC T LV Sbjct: 79 ----LKDGLKIESVLLPMKEEISDEDGKISRHARYTICVSSQVGCKMGCAFCLTAKGGLV 134 Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199 RNLTA EI+ Q+L + IP R+I N+V MGMGEPL N NV K Sbjct: 135 RNLTAGEIVGQILWIK------------RENKIP-YERRI-NVVYMGMGEPLDNLTNVSK 180 Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPIN 258 ++ I + + GL+ S RR T+STSG I ++GE ++GV+LAISLHAV+N+LR+ L+PIN Sbjct: 181 AIKILALNEGLAISPRRQTVSTSGLGSQIKKLGEMDLGVLLAISLHAVTNELRSRLMPIN 240 Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318 + Y +E ++DA R +P + +R+ FEY+++K +NDS DA L+K+L GI AK+NLI F Sbjct: 241 KAYNIEAVMDAVRGFP-IDMRKRVMFEYLVIKDLNDSVSDAKKLVKLLHGIKAKVNLIYF 299 Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 NP G E+ + ++ F E ++ G + IR +GLDI AACGQLK Sbjct: 300 NPHEGSEFGRPELASMLKFQEYLRDHGVTCTIRQSKGLDISAACGQLK 347 >gi|253828191|ref|ZP_04871076.1| Fe-S cluster redox enzyme [Helicobacter canadensis MIT 98-5491] gi|253511597|gb|EES90256.1| Fe-S cluster redox enzyme [Helicobacter canadensis MIT 98-5491] Length = 346 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 141/365 (38%), Positives = 206/365 (56%), Gaps = 28/365 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K+++ G L ++L + + R QI+ W+YV DF+ M ++ + +R Sbjct: 1 MDKQNVFGFTLNSLSDSL------KDFPKFRAKQIYHWLYVHYENDFEKMENLPKNLREF 54 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-SRGTLCVSSQV 122 L ++F EI ++ S DG+ K+L + + E V++ K + TLC+SSQV Sbjct: 55 LKENFISNAVEIAKKEQSSDGSVKYLFK-----TADNLTYEAVFLKMKEDKFTLCLSSQV 109 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + CSFC T VRNL A E++ QV + + IPS K NI Sbjct: 110 GCKVGCSFCLTAKGGFVRNLNAGEMVYQVFAIK------------KDQNIPS--NKAVNI 155 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241 V MGMGEPL N +NV K + I S+ GLS S+RR T+STSG P I ++G ++GV LAI Sbjct: 156 VYMGMGEPLDNLENVTKCIQILSELDGLSISRRRQTISTSGIAPKIKKLGALDLGVQLAI 215 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHAV ++LR L+PIN+ Y ++ +ID +P + + +R+ FEY+M+ GINDS A Sbjct: 216 SLHAVDDELRTKLMPINKAYNIQNIIDEVVAFP-IDSRKRVMFEYLMIDGINDSLECAKK 274 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L+ +L I AK+NLI FNP G Y ++ + F E + + G IR +GLDI AA Sbjct: 275 LVALLNKIKAKVNLIYFNPHEGSLYKRPSKEKVEAFREYLLKKGLLCTIRESKGLDISAA 334 Query: 362 CGQLK 366 CGQL+ Sbjct: 335 CGQLR 339 >gi|322373635|ref|ZP_08048171.1| radical SAM enzyme, Cfr family [Streptococcus sp. C150] gi|321278677|gb|EFX55746.1| radical SAM enzyme, Cfr family [Streptococcus sp. C150] Length = 389 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 139/368 (37%), Positives = 216/368 (58%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ G+ REEL + ++ G + R +QIW W+Y + ++ F+ M++IS++ LN Sbjct: 25 KPSIYGLTREELIDWAMEHG----EKKFRATQIWDWLYKKRVQSFEEMTNISKDFIAKLN 80 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 ++F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 81 ENFCVNPLKQRIVQE--SKDGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 133 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+LTA EI+ Q++L + D G ++S++V Sbjct: 134 CNIGCTFCASGLIKKQRDLTAGEIVAQIMLVQKYFDD------------RGDGERVSHVV 181 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+DNV + L ++ GL+ R IT+STSG P I E + V LA+S Sbjct: 182 VMGIGEPFDNYDNVLRFLRTINNDNGLAIGARHITVSTSGLAPKIKEFANEGVQVNLAVS 241 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +NDLR+ ++ INR +PLE L +A +Y +N RR+TFEY+ML +ND P +A L Sbjct: 242 LHAPNNDLRSSIMRINRSFPLEKLFEAIEYYIQTTN-RRVTFEYIMLNEVNDHPENAQEL 300 Query: 303 IKILKGIP--AKINLIPFNP-WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 + K I + INLIP+NP +Y S ++ + F + +K++G + +R G DI Sbjct: 301 ADLTKKIRKLSYINLIPYNPVSEHDQYSRSTKERVAAFYDVLKKNGVNCVVRQEHGTDID 360 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 361 AACGQLRS 368 >gi|149924885|ref|ZP_01913219.1| hypothetical protein PPSIR1_09370 [Plesiocystis pacifica SIR-1] gi|149814238|gb|EDM73847.1| hypothetical protein PPSIR1_09370 [Plesiocystis pacifica SIR-1] Length = 382 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 156/367 (42%), Positives = 214/367 (58%), Gaps = 25/367 (6%) Query: 6 KESLIGMMREELEEAL-LKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K +L GM REEL E L ++ P R Q++ WI+ R DF M+++S+ R L Sbjct: 22 KPNLRGMSREELGEFLGRELSAPA----YRVDQVFGWIHQRRAPDFDAMTNLSKADRAKL 77 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLCVSSQVG 123 + S+ E+ + + DGTRK LR IE+V IP RG T C+SSQVG Sbjct: 78 RERASLDTLEVDTIQRARDGTRKLRLR-----TADGEAIESVLIPNDERGLTQCISSQVG 132 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L C FC T + RNL EI+ QV AR+LL + E P +I+NIV Sbjct: 133 CALDCRFCATASLGFRRNLDTWEIVDQVARARTLLAE--EAEREGARWTP----RITNIV 186 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-----VGEEIGVM 238 MGMGEPL NF+ V++SLSI +D+ G + + RRIT+STSG VP I R +GEE+G Sbjct: 187 YMGMGEPLHNFNQVRRSLSILTDAGGEAIAGRRITVSTSGLVPAIERFAREGLGEEVG-- 244 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LAISL+A ++ +R+ ++PINRK+ ++ L+ A S RR+TFEYV+L G+NDS D Sbjct: 245 LAISLNATTDAVRDEVMPINRKWKIDELL-AAVRRVPTSRRRRVTFEYVLLGGVNDSDAD 303 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A LI++++ +N+IPFNP Y Q + F ++RSG +RTPRG DI Sbjct: 304 AHRLIELVREFRCHVNVIPFNPHEHAPYRRPSQSRVRAFMAILRRSGVDVWLRTPRGDDI 363 Query: 359 LAACGQL 365 AACGQL Sbjct: 364 QAACGQL 370 >gi|55821670|ref|YP_140112.1| ribosomal RNA large subunit methyltransferase N [Streptococcus thermophilus LMG 18311] gi|81560179|sp|Q5M2V3|RLMN_STRT2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|55737655|gb|AAV61297.1| conserved hypothetical protein [Streptococcus thermophilus LMG 18311] gi|312279010|gb|ADQ63667.1| Ribosomal RNA large subunit methyltransferase N [Streptococcus thermophilus ND03] Length = 389 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 137/368 (37%), Positives = 213/368 (57%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ G+ R+EL + + + R +QIW W+Y + ++ F+ M++IS++ LN Sbjct: 25 KPSIYGLTRDEL----IDWAVEHGEKKFRATQIWDWLYKKRVQSFEEMTNISKDFIAKLN 80 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 +F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 81 DNFCVNPLKQRIVQE--SKDGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 133 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+LTA EI+ Q++L + D G ++S++V Sbjct: 134 CNIGCTFCASGLIKKQRDLTAGEIVAQIMLVQKYFDD------------RGDGERVSHVV 181 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+DNV + L ++ GL+ R IT+STSG P I E + V LA+S Sbjct: 182 VMGIGEPFDNYDNVLRFLRTINNDNGLAIGARHITVSTSGLAPKIKEFANEGVQVNLAVS 241 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +NDLR+ ++ INR +PLE L +A +Y +N RR+TFEY+ML +ND P +A L Sbjct: 242 LHAPNNDLRSSIMRINRSFPLEKLFEAIEYYIQTTN-RRVTFEYIMLNEVNDHPENAQEL 300 Query: 303 IKILKGIP--AKINLIPFNPWPGCEYLCSDQKD-IVTFSECIKRSGYSSPIRTPRGLDIL 359 + K I + INLIP+NP ++ K+ + TF + +K++G + +R G DI Sbjct: 301 ADLTKKIRKLSYINLIPYNPVSEHDHYSRSTKERVATFYDVLKKNGVNCVVRQEHGTDID 360 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 361 AACGQLRS 368 >gi|312863236|ref|ZP_07723474.1| 23S rRNA m2A2503 methyltransferase [Streptococcus vestibularis F0396] gi|322516113|ref|ZP_08069048.1| cfr family radical SAM enzyme [Streptococcus vestibularis ATCC 49124] gi|311100772|gb|EFQ58977.1| 23S rRNA m2A2503 methyltransferase [Streptococcus vestibularis F0396] gi|322125408|gb|EFX96758.1| cfr family radical SAM enzyme [Streptococcus vestibularis ATCC 49124] Length = 389 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 138/368 (37%), Positives = 216/368 (58%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ G+ R+EL + ++ G + R +QIW W+Y + ++ F+ M++IS++ LN Sbjct: 25 KHSIYGLTRDELIDWAMEHG----EKKFRATQIWDWLYKKRVQSFEEMTNISKDFIAKLN 80 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 ++F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 81 ENFCVNPLKQRIVQE--SKDGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 133 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+LTA EI+ Q++L + D G ++S++V Sbjct: 134 CNIGCTFCASGLIKKQRDLTAGEIVAQIMLVQKYFDD------------RGDGERVSHVV 181 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+DNV + L ++ GL+ R IT+STSG P I E + V LA+S Sbjct: 182 VMGIGEPFDNYDNVLRFLRTINNDNGLAIGARHITVSTSGLAPKIKEFANEGVQVNLAVS 241 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +NDLR+ ++ INR +PLE L +A +Y +N RR+TFEY+ML +ND P +A L Sbjct: 242 LHAPNNDLRSSIMRINRSFPLEKLFEAIEYYIQTTN-RRVTFEYIMLNEVNDHPENAQEL 300 Query: 303 IKILKGIP--AKINLIPFNP-WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 + K I + INLIP+NP +Y S ++ + F + +K++G + +R G DI Sbjct: 301 ADLTKKIRKLSYINLIPYNPVSEHDQYSRSTKERVAAFYDVLKKNGVNCVVRQEHGTDID 360 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 361 AACGQLRS 368 >gi|116515112|ref|YP_802741.1| YfgB [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285492|sp|Q057Q1|RLMN_BUCCC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|116256966|gb|ABJ90648.1| putative pyruvate formate lyase activating enzyme [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 359 Score = 240 bits (613), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 146/370 (39%), Positives = 209/370 (56%), Gaps = 34/370 (9%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ +++ +KIG + R QI WIY + F MS+++ ++ L Sbjct: 13 KKINLLNFNLKKMINFFIKIG----EKKFRAIQITDWIYKKQNIKFDQMSNLNFFLKKKL 68 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 N I P+ + + S DGT KW + + IET+YIPEK R TLC+SSQVGC Sbjct: 69 NNIAVIKIPKCIKKIKSIDGTIKW------KFLCNKEFIETIYIPEKKRATLCISSQVGC 122 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLA-------RSLLGDFPGCEDIEGMVIPSVGR 177 L C+FC TG RNL EI+ Q+ S +FP Sbjct: 123 QLKCNFCATGQLGYKRNLLVSEIIGQIWYVINKIKKYNSKKKNFPP-------------- 168 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 I NIVMMGMGEPL N N+ ++ I + G +FSK ++TLSTSG VP I ++ +I + Sbjct: 169 -IKNIVMMGMGEPLLNLKNIIIAIDIILGNYGFNFSKNKVTLSTSGIVPAINKIAGKIDI 227 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDS 295 LA+SLHA +N +RN ++PIN+ Y +++L+++ ++Y S+A + +T EYVML IND Sbjct: 228 SLAVSLHASNNTIRNKIMPINKIYNIQLLLESIKNYLKKSSANKGIVTIEYVMLSKINDF 287 Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 A+ L +LK IP KINLIP+NP Y+CS K+I+ F+ +++ G+ IR RG Sbjct: 288 QHHAIELSNLLKNIPCKINLIPWNPIKNSSYICSSSKNIINFANFLRKKGFIVIIRKNRG 347 Query: 356 LDILAACGQL 365 DI AACGQL Sbjct: 348 SDIQAACGQL 357 >gi|297564808|ref|YP_003683780.1| radical SAM enzyme, Cfr family [Meiothermus silvanus DSM 9946] gi|296849257|gb|ADH62272.1| radical SAM enzyme, Cfr family [Meiothermus silvanus DSM 9946] Length = 344 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 129/333 (38%), Positives = 188/333 (56%), Gaps = 21/333 (6%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93 R QI W+Y RG+R++ M+D+ + +R L + + + V +S DG K+L Sbjct: 26 RKEQIAHWLYARGVREWSEMTDLPKGLRQELAEKYRVSEFAHVAPFVSQDGAVKYLY--- 82 Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153 + + E VY+P R T+C+SS VGC C+FC TG RNLTA EIL Q+L Sbjct: 83 --TLWDGQKTEAVYMPYAGRKTICISSMVGCPAGCTFCATGKMGFGRNLTAAEILDQILF 140 Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213 A G P R+I N+V+MGMGEPL N ++V +++ D GL+ S Sbjct: 141 AAHHQGHSP--------------REIRNVVLMGMGEPLLNLNHVLEAIRRMLDPQGLAMS 186 Query: 214 KRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 RRITLST G I R+ +E +GV LA+SLHA + R ++P +Y + +++A RH Sbjct: 187 PRRITLSTVGIPRGIYRLAQEDLGVRLALSLHAPDDQTRQKIIPTAHRYSIAEIMEAVRH 246 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + RR+T EY +LKG+ND P A L +L G+ A +NLIP+NPW G + + ++ Sbjct: 247 YYAQTK-RRVTLEYTLLKGLNDHPWQARALAGLLAGLSAHVNLIPWNPWEGAPHQGTGKE 305 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I+ F+ ++R G +R RG D+ AACGQL Sbjct: 306 KILAFAAALERMGIPVSVRWSRGRDVGAACGQL 338 >gi|206900837|ref|YP_002251150.1| radical SAM enzyme, Cfr family [Dictyoglomus thermophilum H-6-12] gi|254807170|sp|B5YF42|RLMN_DICT6 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|206739940|gb|ACI18998.1| radical SAM enzyme, Cfr family [Dictyoglomus thermophilum H-6-12] Length = 348 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 137/337 (40%), Positives = 201/337 (59%), Gaps = 24/337 (7%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDG-TRKWLLRF 92 R QI+ W+Y + I + M+++ + +R + ++FS P++V KI+ +G T+K+LL Sbjct: 25 RADQIFDWVYKKLILNPSSMTNLPKGLRQKIAEYFSFDIPKVV--KITGEGNTKKYLLEL 82 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 IETV I K+R T+CVS QVGC++ C FC TG L RNL EI+ Q++ Sbjct: 83 E-----DGENIETVLISHKNRNTVCVSVQVGCAIGCKFCATGLVGLRRNLNTHEIVGQII 137 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 L + L + G +ISN+V MGMGEPL N+DNV KS+ I + GL+ Sbjct: 138 LIQKELFE--------------KGDRISNVVYMGMGEPLLNYDNVVKSIRIINREWGLNI 183 Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 + ITLST G VP I ++GEE + V LAISLHA +N+LR+ ++PIN++YP+E L+++ Sbjct: 184 GSKHITLSTIGIVPKIYQLGEEDLKVRLAISLHAPNNELRSKIIPINKEYPIEKLLESAF 243 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 +Y RR+TFEYV++K ND A+ L +LK P +NLIP+N P + SD Sbjct: 244 YYAE-KTGRRVTFEYVLIKNFNDREEHAIELAGLLKNKPVHVNLIPWNKVPEYPWETSDL 302 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 KDI F + + +G + +R G I A CGQL++L Sbjct: 303 KDIFKFKKILSDAGINVTLRISYGSRIKAGCGQLRAL 339 >gi|323705502|ref|ZP_08117077.1| radical SAM enzyme, Cfr family [Thermoanaerobacterium xylanolyticum LX-11] gi|323535404|gb|EGB25180.1| radical SAM enzyme, Cfr family [Thermoanaerobacterium xylanolyticum LX-11] Length = 343 Score = 240 bits (612), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 147/369 (39%), Positives = 209/369 (56%), Gaps = 33/369 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 L M +ELE+ L IG + R Q+++WIY RGI +F M+DI +++R L Sbjct: 3 DLKNMTIDELEKFFLDIG----ETKYRAKQVFRWIY-RGITNFDDMTDIKKDLRQKLKNM 57 Query: 68 FSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I +I + +S DGT K+L I +E V I T C+S+QVGC++ Sbjct: 58 AFISNLQIAKKVVSSEDGTAKYLFLLDDENI-----VEGVAIKYSFGNTSCISTQVGCNM 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 CSFC +G VRNL A E++ +VL+ G KISNIV+MG Sbjct: 113 RCSFCASGIGGKVRNLKASEMVDEVLIMNKDYG------------------KISNIVLMG 154 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 GEP N+D V K + I ++ G+ R IT+ST G VP I + +E +GV L+ISLHA Sbjct: 155 SGEPFDNYDEVMKFIKIVNNPFGMGIGVRHITISTCGIVPKIYKFADEGLGVNLSISLHA 214 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++DLR+ L+PIN+ YP++ LIDACR+Y ++ RRITFEY ++K +NDS +L L + Sbjct: 215 PTDDLRSQLMPINKVYPIKDLIDACRYYIDKTH-RRITFEYSLIKSVNDSYDMSLKLSNL 273 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG+ +NLIP N Y +D + I+ F ++RSG + +R G DI AACGQL Sbjct: 274 LKGLLCHVNLIPVNYVSEIGYEKADNEKIMAFKNVLERSGITCTVRRELGSDIDAACGQL 333 Query: 366 --KSLSKRI 372 K L+ R+ Sbjct: 334 RRKYLAGRV 342 >gi|313672236|ref|YP_004050347.1| 23S rRNA m(2)a-2503 methyltransferase [Calditerrivibrio nitroreducens DSM 19672] gi|312938992|gb|ADR18184.1| 23S rRNA m(2)A-2503 methyltransferase [Calditerrivibrio nitroreducens DSM 19672] Length = 350 Score = 240 bits (612), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 129/356 (36%), Positives = 213/356 (59%), Gaps = 26/356 (7%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 M+ EEL++ + + Q R Q++KWI+ +G++DF M+D+S E+R L + S Sbjct: 7 MLLEELKDFM----VEQGEKSFRGEQVYKWIFQKGVKDFSQMTDLSVELRGKLQNNASFT 62 Query: 72 YPEIVD-EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130 Y + ++ ++ DG++K+L + +IE+V + ++ R TLCVS+QVGC + C+F Sbjct: 63 YLKPIEIKRDEYDGSQKFLFELEDKN-----KIESVALKDQDRITLCVSTQVGCRMGCAF 117 Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 C T +R+LTA EI+ Q++ L + K++NIV MGMGEP Sbjct: 118 CATAKIGFIRDLTAGEIVRQIMEVNEHL--------------ATNSEKVTNIVFMGMGEP 163 Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSND 249 L N+ NV K++ I +D MGL +S R++T+STSG V I + + + V LA+SL+A ++D Sbjct: 164 LDNYHNVVKAIGIITDEMGLGYSHRKVTVSTSGVVDRIDELFKLKKQVNLAVSLNATTDD 223 Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309 +R+ ++PIN+K+ +E L+ + P + +RIT EYVM+KG+ND+ DA L+++L G+ Sbjct: 224 IRSAIMPINKKFNIEKLMKKLKSLP-IQKRKRITIEYVMIKGVNDTLDDAKRLVRLLNGL 282 Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 P KINLI +N Y D++ +++F + + ++ IR G +I ACGQL Sbjct: 283 PIKINLIAYNDGGNENYRAPDEQTVLSFQKYLVDKHITAFIRKSLGKNIEGACGQL 338 >gi|154175427|ref|YP_001407355.1| ribosomal RNA large subunit methyltransferase N [Campylobacter curvus 525.92] gi|205829690|sp|A7GVW3|RLMN_CAMC5 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|112802451|gb|EAT99795.1| radical SAM enzyme, Cfr family [Campylobacter curvus 525.92] Length = 371 Score = 239 bits (611), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 141/355 (39%), Positives = 207/355 (58%), Gaps = 34/355 (9%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 + R QI++WIY + +F M ++ +++R L Q F V + S DG+ K+L Sbjct: 19 KFRAKQIYEWIYKKNAENFDEMLNLPKDMRTNLAQEFYFDPLYCVKFEESSDGSIKYLF- 77 Query: 92 FPARCIGGPVEIETVYIPEK-------------SRGTLCVSSQVGCSLTCSFCYTGTQKL 138 + IE+V +P K +R T+CVSSQVGC + C FC T L Sbjct: 78 ----ALKDGNTIESVLLPMKEVEVDEGGNISRHARYTICVSSQVGCKMGCLFCLTAKGGL 133 Query: 139 VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVK 198 RNL+ EI+ Q+L + + IP R N+V MGMGEPL N NV Sbjct: 134 KRNLSPGEIVGQILWIK------------KTNHIPYERR--VNVVYMGMGEPLDNLANVA 179 Query: 199 KSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPI 257 K++ I + GL+ S RR T+STSG I ++GE ++GV+LAISLHAV+N+LR+ L+P+ Sbjct: 180 KAIQILKEPDGLAISPRRQTVSTSGLGAQIKKLGEMDLGVLLAISLHAVTNELRSKLMPV 239 Query: 258 NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIP 317 N+ Y +E ++DA R +P + +R+ FEY++++G+NDS +DA L+K+L GI AK+NLI Sbjct: 240 NKAYNIEAVMDAVRGFP-IDMRKRVMFEYLVIRGMNDSVKDAKTLVKLLHGIKAKVNLIY 298 Query: 318 FNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRI 372 FNP G EY + D++ F E ++ G + IR +GLDI AACGQLK S+ + Sbjct: 299 FNPHEGSEYGRPELADMLEFQEYLRAHGVTCTIRQSKGLDISAACGQLKQRSQNL 353 >gi|194700820|gb|ACF84494.1| unknown [Zea mays] Length = 409 Score = 239 bits (611), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 139/363 (38%), Positives = 202/363 (55%), Gaps = 26/363 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGI--RDFQGMSDISQEVRHL 63 K L GM ELE + G M +WK +Y + + ++ ++++ R + Sbjct: 49 KAMLKGMDYSELENWVQAQGFRPGQAMM----LWKCLYGNNVWAHCYDELAGLNKDFRKM 104 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQV 122 + +H + + D I+ DGTRK L + IETV IP + R T+CVSSQV Sbjct: 105 ITEHADLKALTMKDIHIASDGTRKILFSLEDGSV-----IETVIIPCARGRTTICVSSQV 159 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC++ C FC+TG L ++L+ EI+ Q + AR L D G I+N+ Sbjct: 160 GCAMNCQFCFTGRMGLRKHLSTAEIVEQAVFARRLFSDELG--------------SINNV 205 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 V MGMGEP N DNV K+ +I D GL FS R++T+STSG VP + R +E LA+S Sbjct: 206 VFMGMGEPFHNIDNVIKASAIMVDEQGLHFSPRKVTVSTSGLVPQLKRFLQESNCSLAVS 265 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 L+A ++++RN ++PINRKY L +L+ R L + + FEYVML G+NDS DA L Sbjct: 266 LNATTDEVRNWIMPINRKYNLNLLLGTLREELNLRQKQIVLFEYVMLSGVNDSMDDAKRL 325 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 I++++GIP KINLI FNP G ++ + I+ F + + G + +R RG D +AAC Sbjct: 326 IELVQGIPCKINLISFNPHGGSQFKPTPDDKIIEFRNVLIQGGLTVFVRLSRGDDQMAAC 385 Query: 363 GQL 365 GQL Sbjct: 386 GQL 388 >gi|310778596|ref|YP_003966929.1| 23S rRNA m(2)A-2503 methyltransferase [Ilyobacter polytropus DSM 2926] gi|309747919|gb|ADO82581.1| 23S rRNA m(2)A-2503 methyltransferase [Ilyobacter polytropus DSM 2926] Length = 349 Score = 239 bits (611), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 142/360 (39%), Positives = 205/360 (56%), Gaps = 26/360 (7%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 +ELE+ ++ IG+ + QI+ W++ + IR+ M++IS++ R LL I + Sbjct: 13 KELEDFIVSIGMK----KFNGKQIFDWLHGKIIRNIDDMTNISKKNRELLQSKSYIPFLN 68 Query: 75 IVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133 +V K S D T K++ + G IETV + K R TLC+SSQVGC + CSFC T Sbjct: 69 VVKHKTSKIDYTEKFVFKLED---GNT--IETVLLKHKERNTLCISSQVGCPVKCSFCAT 123 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 G VRNL EIL QV ++ S G+ I+N+V MGMGEP+ N Sbjct: 124 GLDGFVRNLNVHEILNQVYT-------------VQRRFFKSEGKNITNVVFMGMGEPMLN 170 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLAISLHAVSNDLRN 252 +NV K++ I SD G++ SKRRIT+STSG +P I + + E+I V LAISLHA++N+ R+ Sbjct: 171 IENVIKAVDILSDENGMNISKRRITISTSGIIPGIEKLLQEKIPVELAISLHAITNEKRD 230 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312 L+PINRKYPLE L Y ++ RRITFEYV++ +N + DA L + + Sbjct: 231 ALIPINRKYPLEDLYTILNEYQKIT-KRRITFEYVLIDKLNVTQSDADRLAEFMHSFDHV 289 Query: 313 INLIPFNPWPGCEYLCSDQKDIVTF-SECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 +NLIP+NP PG +Y + I F + + + +R +G DI ACGQL+ K+ Sbjct: 290 LNLIPYNPVPGNDYERPAPEKIKKFYNYLLNERKVNVTLRHEKGSDIDGACGQLRQSIKK 349 >gi|228477270|ref|ZP_04061908.1| radical SAM enzyme, Cfr family [Streptococcus salivarius SK126] gi|228251289|gb|EEK10460.1| radical SAM enzyme, Cfr family [Streptococcus salivarius SK126] Length = 389 Score = 239 bits (610), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 138/368 (37%), Positives = 216/368 (58%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ G+ R+EL + ++ G + R +QIW W+Y + ++ F+ M++IS++ LN Sbjct: 25 KPSIYGLTRDELIDWAMEHG----EKKFRATQIWDWLYKKRVQSFEEMTNISKDFIAKLN 80 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 ++F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 81 ENFCVNPLKQRIVQE--SKDGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 133 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+LTA EI+ Q++L + D G ++S++V Sbjct: 134 CNIGCTFCASGLIKKQRDLTAGEIVAQIMLVQKYFDD------------RGDGERVSHVV 181 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+DNV + L ++ GL+ R IT+STSG P I E + V LA+S Sbjct: 182 VMGIGEPFDNYDNVLRFLRTINNDNGLAIGARHITVSTSGLAPKIKEFANEGVQVNLAVS 241 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +NDLR+ ++ INR +PLE L +A +Y +N RR+TFEY+ML +ND P +A L Sbjct: 242 LHAPNNDLRSSIMRINRSFPLEKLFEAIEYYIQTTN-RRVTFEYIMLNEVNDHPENAQEL 300 Query: 303 IKILKGIP--AKINLIPFNP-WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 + K I + INLIP+NP +Y S ++ + F + +K++G + +R G DI Sbjct: 301 ADLTKKIRKLSYINLIPYNPVSEHDQYSRSTKERVAAFYDVLKKNGVNCVVRQEHGTDID 360 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 361 AACGQLRS 368 >gi|289522515|ref|ZP_06439369.1| radical SAM enzyme, Cfr family [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504351|gb|EFD25515.1| radical SAM enzyme, Cfr family [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 343 Score = 239 bits (610), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 138/339 (40%), Positives = 195/339 (57%), Gaps = 24/339 (7%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R R QI +WIY + I DFQ M+++S+E+R L + P + E+ S DGT+K+L + Sbjct: 27 RYRADQICQWIYQKKIFDFQEMTNLSKELRGKLADAVMVAPPILTREETSKDGTKKYLWQ 86 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 F +E+V + ++ R T C+S+QVGC L C+FC +G VR+L+ EI+ Q Sbjct: 87 FH-----DGERVESVLLSQEGRLTACLSTQVGCPLACTFCASGEGGFVRDLSGGEIVGQF 141 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 L L GR I N+V MGMGEP N ++V KS+ I ++ Sbjct: 142 LAMEKL-----------------AGRDIDNVVYMGMGEPFLNQESVFKSIKILNEPKMRG 184 Query: 212 FSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 RRIT+ST+G VP I + E ++ V L++SLHA ++ LR+ L+PIN+KYPL L++A Sbjct: 185 LGIRRITISTAGIVPGILALAEAQMPVKLSVSLHAPNDRLRSKLMPINKKYPLASLLEAL 244 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 R Y +N R +TFEY+ML+G+ND P A L +LKG+ INLIP+N G +Y S Sbjct: 245 RRYQSATNDR-VTFEYLMLEGVNDLPEYAYELAALLKGLSFYINLIPYNQVEGSKYKRSS 303 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369 I FS + + IR RG DI AACGQLK +S Sbjct: 304 AGRIKAFSNILSQLNIEHEIRRERGSDINAACGQLKRIS 342 >gi|116626240|ref|YP_828396.1| radical SAM protein [Candidatus Solibacter usitatus Ellin6076] gi|123024386|sp|Q01QF9|RLMN_SOLUE RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|116229402|gb|ABJ88111.1| radical SAM enzyme, Cfr family [Candidatus Solibacter usitatus Ellin6076] Length = 356 Score = 239 bits (610), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 147/361 (40%), Positives = 204/361 (56%), Gaps = 26/361 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + L+GM +L EAL G Q R + QI++ IY + +S + ++R L Sbjct: 17 QPLVGMDLTDLREAL---GSDQPGYRAK--QIYEAIYRGQAANLVQISTLPAQLREDLAA 71 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + PEI S DGTR++LL+ +ETV +P+ R T+C+SSQVGC + Sbjct: 72 RHEVGLPEIAHLYQSTDGTRRYLLKLE-----DGRTVETVLMPDGERDTICISSQVGCPV 126 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC T L R+LTA EI+ QVLL E + GR NIVMMG Sbjct: 127 DCKFCMTALMGLERSLTAGEIVGQVLLVAR-----------ENQLRQDGGR--LNIVMMG 173 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 GEPL N +NV K+ I D G S RR+T+ST+G +P IA +G E + LAISL+A Sbjct: 174 QGEPLLNLENVVKATRILLDPAGFGLSPRRVTVSTAGIIPKIAELGREPVRPKLAISLNA 233 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + + R L+PI RKY L+ L+ AC+ YP L ++TFEYV+L+G+ND+ DA ++K+ Sbjct: 234 STEESRQELMPITRKYHLKDLLAACKAYP-LRPWEKLTFEYVLLRGVNDTDADARRVVKL 292 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L + AK+NLI NP PG Y D + + +F ++R+ +R PRGLDI AACGQL Sbjct: 293 LSNLNAKVNLIALNPGPGIPYATPDPERVASFQNIVRRA-LPCFVRKPRGLDIYAACGQL 351 Query: 366 K 366 K Sbjct: 352 K 352 >gi|255568836|ref|XP_002525389.1| catalytic, putative [Ricinus communis] gi|223535352|gb|EEF37027.1| catalytic, putative [Ricinus communis] Length = 861 Score = 239 bits (609), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 138/361 (38%), Positives = 201/361 (55%), Gaps = 27/361 (7%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRG---IRDFQGMSDISQEVRHLLN 65 L GM ELE+ + G M +WK +Y F + ++++ + +L+ Sbjct: 80 LKGMSYTELEKWVQSHGFRPGQAMM----LWKRLYANNNTLAHYFDELEGLNKDFKKMLS 135 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGC 124 +H + + D + DGT+K L R + IETV IP ++ R T+CVSSQVGC Sbjct: 136 EHARLKAISMEDVVTASDGTKKILFRLDDEMV-----IETVIIPCDRGRTTVCVSSQVGC 190 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 ++ C FCYTG L R+LT EI+ QV+ A+ LL G I+N+V Sbjct: 191 AMNCQFCYTGRMGLKRHLTTAEIVDQVVSAQRLLTSDAGS--------------ITNVVF 236 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV K+ I GL FS R++T+STSG VP + R E LA+SL+ Sbjct: 237 MGMGEPLQNIENVIKAADIMVHDQGLHFSPRKVTISTSGLVPQLKRFLRESNCALAVSLN 296 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++++RN ++PINRKY L +L+D R N ++ FEYVML G+NDS DA L Sbjct: 297 ATTDEVRNWIMPINRKYNLGLLLDTLRKELHFKNNYKVLFEYVMLAGVNDSLEDAERLSD 356 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +++GIP KINLI FNP G ++ + ++ ++ F + + + +R RG D +AACGQ Sbjct: 357 LVQGIPCKINLIQFNPHSGSQFRPTSKEKMIEFRNILAEAKCTVFLRDSRGDDQMAACGQ 416 Query: 365 L 365 L Sbjct: 417 L 417 >gi|55823590|ref|YP_142031.1| ribosomal RNA large subunit methyltransferase N [Streptococcus thermophilus CNRZ1066] gi|116628382|ref|YP_821001.1| hypothetical protein STER_1660 [Streptococcus thermophilus LMD-9] gi|81558991|sp|Q5LY98|RLMN_STRT1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|122267023|sp|Q03J17|RLMN_STRTD RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|55739575|gb|AAV63216.1| conserved hypothetical protein [Streptococcus thermophilus CNRZ1066] gi|116101659|gb|ABJ66805.1| Predicted Fe-S-cluster redox enzyme [Streptococcus thermophilus LMD-9] Length = 389 Score = 239 bits (609), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 136/368 (36%), Positives = 212/368 (57%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ G+ R+EL + + + R +QIW W+Y + ++ F+ M++IS++ LN Sbjct: 25 KPSIYGLTRDEL----IDWAVEHGEKKFRATQIWDWLYKKRVQSFEEMTNISKDFIAKLN 80 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 +F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 81 DNFCVNPLKQRIVQE--SKDGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 133 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+LTA EI+ Q++L + D G ++S++V Sbjct: 134 CNIGCTFCASGLIKKQRDLTAGEIVAQIMLVQKYFDD------------RGDGERVSHVV 181 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+DNV + L ++ GL+ R IT+STSG P I E + V LA+S Sbjct: 182 VMGIGEPFDNYDNVLRFLRTINNDNGLAIGARHITVSTSGLAPKIKEFANEGVQVNLAVS 241 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +NDLR+ ++ INR +PLE L +A +Y +N RR+TFEY+ML +ND P +A L Sbjct: 242 LHAPNNDLRSSIMRINRSFPLEKLFEAIEYYIQTTN-RRVTFEYIMLNEVNDHPENAQEL 300 Query: 303 IKILKGIP--AKINLIPFNPWPGCEYLCSDQKD-IVTFSECIKRSGYSSPIRTPRGLDIL 359 + K I + INLIP+NP ++ K+ + F + +K++G + +R G DI Sbjct: 301 ADLTKKIRKLSYINLIPYNPVSEHDHYSRSTKERVAAFYDVLKKNGVNCVVRQEHGTDID 360 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 361 AACGQLRS 368 >gi|237753454|ref|ZP_04583934.1| conserved hypothetical protein [Helicobacter winghamensis ATCC BAA-430] gi|229375721|gb|EEO25812.1| conserved hypothetical protein [Helicobacter winghamensis ATCC BAA-430] Length = 354 Score = 239 bits (609), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 133/337 (39%), Positives = 196/337 (58%), Gaps = 22/337 (6%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 + R QI+ W+Y+R + DF+ M ++ +E++ L + F+ +I ++ S DG+ K+L Sbjct: 24 KFRAKQIYHWLYIRYVEDFEAMDNLPKELKTYLKETFTTTSAQICKQEKSLDGSVKYL-- 81 Query: 92 FPARCIGGPVEIETVYIPEK-SRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150 F A+ + E V++ K + TLC+SSQVGC + CSFC T VRNL+ EI+ Q Sbjct: 82 FQAQ---DNLTYEAVFLKMKEDKFTLCLSSQVGCKVGCSFCLTAKGGFVRNLSTGEIVYQ 138 Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210 VL + + IP K NIV MGMGEPL N DNV ++ I ++ GL Sbjct: 139 VLAIK------------KAQNIPH--NKAINIVYMGMGEPLDNLDNVTNTIKILAELDGL 184 Query: 211 SFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 S S RR T+STSG P I ++G +GV LAISLHAV + LR+ L+PIN+ Y ++ +ID Sbjct: 185 SISTRRQTISTSGIAPKIKKLGTLNLGVQLAISLHAVDDKLRSELMPINKAYNIQAVIDE 244 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 +P + + +R+ FEY+++ G+ND A L+ +L + AK+NLI FNP G Y Sbjct: 245 VVQFP-IDSRKRVMFEYLVIDGLNDGLDSAKKLVALLNKLKAKVNLIYFNPHEGSIYKRP 303 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + + F E + + G IR +GLDI AACGQL+ Sbjct: 304 SAEKVEAFREFLLKKGLLCTIRESKGLDISAACGQLR 340 >gi|223038329|ref|ZP_03608623.1| radical SAM enzyme, Cfr family [Campylobacter rectus RM3267] gi|222880186|gb|EEF15273.1| radical SAM enzyme, Cfr family [Campylobacter rectus RM3267] Length = 416 Score = 239 bits (609), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 142/354 (40%), Positives = 212/354 (59%), Gaps = 34/354 (9%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI++W+Y + F M ++ +++R L Q F + V + S DG+ K+L Sbjct: 20 FRAKQIFEWLYKKNATSFDEMLNLPKDLRANLVQEFYFDPLKCVKFEQSADGSIKYLFE- 78 Query: 93 PARCIGGPVEIETVYIPEK-------------SRGTLCVSSQVGCSLTCSFCYTGTQKLV 139 + + IE+V +P K +R T+CVSSQVGC + C+FC T LV Sbjct: 79 ----LKDGLRIESVLLPMKEEQTNEQGKISRHARYTVCVSSQVGCKMGCAFCLTAKGGLV 134 Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199 RNLTA EI+ Q+L + IP R+I N+V MGMGEPL N +V K Sbjct: 135 RNLTAGEIVGQILWIK------------RENKIP-YERRI-NVVYMGMGEPLDNLASVSK 180 Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPIN 258 ++ I +++ GL+ S RR T+STSG I ++GE ++GV+LAISLHAV+++LR+ L+PIN Sbjct: 181 AVKILTENDGLAISPRRQTVSTSGLGNQIKKLGEMDLGVLLAISLHAVTDELRSRLMPIN 240 Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318 + Y +E ++DA R +P + +R+ FEY++++G+NDS DA L+++L GI AK+NLI F Sbjct: 241 KAYNIEAVMDAVRGFP-IDMRKRVMFEYLVIRGLNDSLADAKKLVRLLHGIRAKVNLIYF 299 Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRI 372 NP G E+ + D+V F + + G + IR +GLDI AACGQLK S++I Sbjct: 300 NPHEGSEFERPELSDMVKFQDYLCAHGITCTIRQSKGLDISAACGQLKQRSEKI 353 >gi|242058145|ref|XP_002458218.1| hypothetical protein SORBIDRAFT_03g029230 [Sorghum bicolor] gi|241930193|gb|EES03338.1| hypothetical protein SORBIDRAFT_03g029230 [Sorghum bicolor] Length = 407 Score = 238 bits (608), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 138/363 (38%), Positives = 201/363 (55%), Gaps = 26/363 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGI--RDFQGMSDISQEVRHL 63 K L GM ELE + G M +WK +Y + + ++ ++++ R + Sbjct: 47 KAMLKGMDYSELENWVQAQGFRPGQAMM----LWKCLYGNNVWAHCYDELTGLNKDFRKM 102 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQV 122 + +H + + D + DGTRK L + IETV IP + R T+CVSSQV Sbjct: 103 ITEHADLKALTVKDIHTASDGTRKILFSLEDGSV-----IETVIIPCARGRTTVCVSSQV 157 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC++ C FC+TG L ++L+ EI+ Q + AR L D G I+N+ Sbjct: 158 GCAMNCQFCFTGRMGLRKHLSTAEIVEQAVFARRLFSDEFG--------------SINNV 203 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 V MGMGEP N DNV K+ +I D GL FS R++T+STSG VP + R +E LA+S Sbjct: 204 VFMGMGEPFHNIDNVIKASAIMVDGQGLQFSPRKVTVSTSGLVPQLKRFLQESNCSLAVS 263 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 L+A ++++RN ++PINRKY L +L+ R L + + FEYVML G+NDS DA L Sbjct: 264 LNATTDEVRNWIMPINRKYNLNLLLGTLREELNLRKKQIVLFEYVMLSGVNDSMDDAKRL 323 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 I++++GIP KINLI FNP G ++ + I+ F + + G + +R RG D +AAC Sbjct: 324 IELVQGIPCKINLISFNPHGGSQFKPTPDDKIIEFRNVLIQGGLTVFVRLSRGDDQMAAC 383 Query: 363 GQL 365 GQL Sbjct: 384 GQL 386 >gi|42522317|ref|NP_967697.1| hypothetical protein Bd0733 [Bdellovibrio bacteriovorus HD100] gi|81618236|sp|Q6MPV7|RLMN_BDEBA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|39574848|emb|CAE78690.1| conserved hypothetical protein [Bdellovibrio bacteriovorus HD100] Length = 399 Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 128/340 (37%), Positives = 200/340 (58%), Gaps = 22/340 (6%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 + R QI+KW+Y + + D + M+++S+E R L S P ++ S DGT+K+L Sbjct: 49 QFRAQQIFKWVYEQRVTDPEQMTNLSKEFRQDLPSMLSFDLPPVLQHLKSVDGTQKFLFD 108 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 + + +E V IP + R TLC+SS+VGC++ C FC+TG QKL R L E+I+ Q Sbjct: 109 -----MKDGMSVEAVVIPSEDRLTLCISSEVGCNMACKFCFTGKQKLKRRLRTEDIVGQF 163 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 + L + G++I+NIV MGMGEPL N + V K++ + G++ Sbjct: 164 MQVHDRLAE---------------GQRITNIVFMGMGEPLDNPEAVFKTIDVIHSPWGIN 208 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S+++IT+STSG VP + RV + V LA+SL+ ++++R+ ++PIN+++ + L++AC+ Sbjct: 209 LSRKKITVSTSGIVPEMWRVAD-AKVRLAVSLNGPNDEIRSQVMPINKRWDTKALLEACK 267 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 + +S + ITFEYV+LKGI D A L+K++K +P KIN+IPFN PG Y D Sbjct: 268 EHYRVSKDK-ITFEYVLLKGITDQLEHARQLVKLVKDVPCKINIIPFNEHPGSGYERPDD 326 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 I F + G +R G DI AACGQL ++ +R Sbjct: 327 DTIQAFHTELMNLGAHVLLRRSMGRDIFAACGQLTTVKER 366 >gi|218886526|ref|YP_002435847.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|254807169|sp|B8DRU2|RLMN_DESVM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|218757480|gb|ACL08379.1| radical SAM enzyme, Cfr family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 367 Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 134/341 (39%), Positives = 191/341 (56%), Gaps = 22/341 (6%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R R Q+W+W++ + R F M+++S+ R L + I +PE+ K S DGT K+LL Sbjct: 24 RFRARQVWQWLWQKNARSFDAMTNVSKATRARLAEAARITWPEVRTVKTSSDGTVKFLL- 82 Query: 92 FPARCIGGPVEIETVYIPEKSRG-----TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEE 146 + +ETV IP +SR T C+S QVGC++ C+FC TG+ RN+T E Sbjct: 83 ----ALADGALVETVLIPSESREGKVRMTQCLSCQVGCAMGCTFCSTGSMGFERNMTMAE 138 Query: 147 ILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD 206 IL QVL+AR LGD I + N+V MGMGEPL N + V +SL +D Sbjct: 139 ILGQVLVAREHLGDDRPDHPI-----------VRNLVFMGMGEPLLNLNEVMRSLRTLND 187 Query: 207 SMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEML 266 GL FS RRIT+ST G + +GE LA+SLHA + ++R ++P ++ L+ L Sbjct: 188 EFGLCFSPRRITVSTCGIEKGLRELGESGLAFLAVSLHAPNQEVRARIMPRAARWTLDDL 247 Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 + A YP L RITFEY++L G+NDS A L++++ AK+NLI +NP G Y Sbjct: 248 MAALESYP-LKTRERITFEYLLLGGVNDSIDHARELVRLVSRTKAKLNLIVYNPAEGLPY 306 Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 Q I+ F + + ++ IR +G DI AACGQLK+ Sbjct: 307 EAPSQARILAFEQYLWSKNVTAIIRKSKGQDIKAACGQLKA 347 >gi|229542943|ref|ZP_04432003.1| radical SAM enzyme, Cfr family [Bacillus coagulans 36D1] gi|229327363|gb|EEN93038.1| radical SAM enzyme, Cfr family [Bacillus coagulans 36D1] Length = 355 Score = 238 bits (606), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 138/377 (36%), Positives = 224/377 (59%), Gaps = 27/377 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K+S+ G+ ++L +L+ G + R Q+W+W+Y + ++ F M++++++ L Sbjct: 1 MEKKSIFGLTIDQLTGWMLEHG----QKKFRAQQVWEWLYQKRVKSFAEMTNVNKDCLAL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +HF I + V ++ S DGT K+L + + IETV + + ++CV++QVG Sbjct: 57 LEEHFHIHTLKQVVKQESKDGTVKFLFQLKDGNL-----IETVLMRQHYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ CSFC +G + R+L + EI+ Q++ + + G ++S++V Sbjct: 112 CNIGCSFCASGLLRKNRDLESGEIVEQIMYVQKHFDE------------AGKGERVSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242 +MG+GEP NF+NV L I + GL+ R IT+STSG P I + ++ V LAIS Sbjct: 160 VMGIGEPFDNFENVVNFLKIINAPKGLAIGARHITVSTSGLAPKIYAFADLDLQVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ INR YPLE L+ A +Y +N RRITFEY++LK +ND +AL L Sbjct: 220 LHAPNNELRSRIMKINRAYPLEKLMPAIDYYLEKTN-RRITFEYILLKDVNDHKEEALQL 278 Query: 303 IKIL--KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 K+L K A +NLIP+NP Y S+++ I+TF + +K++G + +R G DI A Sbjct: 279 AKLLQDKRHLAYVNLIPYNPVNEHGYQRSEKESIMTFYDTLKKNGINCVVRQEHGTDIDA 338 Query: 361 ACGQLKSLSKRIPKVPR 377 ACGQL+ SK+I K R Sbjct: 339 ACGQLR--SKQIKKANR 353 >gi|257880074|ref|ZP_05659727.1| ribosomal RNA large subunit methyltransferase N [Enterococcus faecium 1,230,933] gi|257882309|ref|ZP_05661962.1| ribosomal RNA large subunit methyltransferase N [Enterococcus faecium 1,231,502] gi|257885503|ref|ZP_05665156.1| ribosomal RNA large subunit methyltransferase N [Enterococcus faecium 1,231,501] gi|257891165|ref|ZP_05670818.1| ribosomal RNA large subunit methyltransferase N [Enterococcus faecium 1,231,410] gi|257893979|ref|ZP_05673632.1| ribosomal RNA large subunit methyltransferase N [Enterococcus faecium 1,231,408] gi|258614592|ref|ZP_05712362.1| hypothetical protein EfaeD_02673 [Enterococcus faecium DO] gi|260560313|ref|ZP_05832489.1| ribosomal RNA large subunit methyltransferase N [Enterococcus faecium C68] gi|261208250|ref|ZP_05922923.1| ribosomal RNA large subunit methyltransferase N [Enterococcus faecium TC 6] gi|289565948|ref|ZP_06446387.1| cfr family radical SAM enzyme [Enterococcus faecium D344SRF] gi|293563079|ref|ZP_06677545.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1162] gi|293567506|ref|ZP_06678851.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1071] gi|294615994|ref|ZP_06695821.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1636] gi|294617653|ref|ZP_06697281.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1679] gi|294623617|ref|ZP_06702455.1| radical SAM enzyme, Cfr family [Enterococcus faecium U0317] gi|314940253|ref|ZP_07847426.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133a04] gi|314941689|ref|ZP_07848568.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133C] gi|314947667|ref|ZP_07851076.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0082] gi|314950654|ref|ZP_07853734.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133A] gi|314992479|ref|ZP_07857900.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133B] gi|314996873|ref|ZP_07861878.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133a01] gi|257814302|gb|EEV43060.1| ribosomal RNA large subunit methyltransferase N [Enterococcus faecium 1,230,933] gi|257817967|gb|EEV45295.1| ribosomal RNA large subunit methyltransferase N [Enterococcus faecium 1,231,502] gi|257821359|gb|EEV48489.1| ribosomal RNA large subunit methyltransferase N [Enterococcus faecium 1,231,501] gi|257827525|gb|EEV54151.1| ribosomal RNA large subunit methyltransferase N [Enterococcus faecium 1,231,410] gi|257830358|gb|EEV56965.1| ribosomal RNA large subunit methyltransferase N [Enterococcus faecium 1,231,408] gi|260073658|gb|EEW61984.1| ribosomal RNA large subunit methyltransferase N [Enterococcus faecium C68] gi|260077507|gb|EEW65225.1| ribosomal RNA large subunit methyltransferase N [Enterococcus faecium TC 6] gi|289162232|gb|EFD10093.1| cfr family radical SAM enzyme [Enterococcus faecium D344SRF] gi|291589749|gb|EFF21552.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1071] gi|291591180|gb|EFF22862.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1636] gi|291596117|gb|EFF27382.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1679] gi|291596943|gb|EFF28156.1| radical SAM enzyme, Cfr family [Enterococcus faecium U0317] gi|291604993|gb|EFF34461.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1162] gi|313589016|gb|EFR67861.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133a01] gi|313592939|gb|EFR71784.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133B] gi|313597201|gb|EFR76046.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133A] gi|313599461|gb|EFR78304.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133C] gi|313640573|gb|EFS05153.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133a04] gi|313645908|gb|EFS10488.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0082] Length = 355 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 136/370 (36%), Positives = 223/370 (60%), Gaps = 30/370 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K+S+ G+ EEL ++ G + R +Q+W+W+Y + + +F M+++S+++ Sbjct: 1 MEKQSIYGLTNEELINWFIENG----EKKFRAAQVWEWLYQKRVSNFTEMTNLSKQLIEK 56 Query: 64 LNQHFSIIYP--EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L++HF II P ++V ++ S DGT K+L P + + IETV + ++ ++CV++Q Sbjct: 57 LSEHF-IINPLKQMVVQEAS-DGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQ 109 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC++ C+FC +G K R+LTA EI+ Q+++ + + ++G ++S+ Sbjct: 110 VGCNIGCTFCASGLLKKNRDLTAGEIVAQIMMVQHYFDE------------RNLGERVSH 157 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240 +V+MG+GEP N+DNV L I +D+ GL+ R IT+STSG I + V LA Sbjct: 158 VVVMGIGEPFDNYDNVMDFLHIINDAKGLAIGARHITVSTSGLAHKIKEFANNGLQVNLA 217 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ISLHA +N++R ++ INR +P+E L++A Y +N RRITFEY+ML +ND P A Sbjct: 218 ISLHAPNNEVRTSIMRINRSFPIEKLMEAVDEYLEKTN-RRITFEYIMLNQVNDRPEHAQ 276 Query: 301 NLIKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 L +LK A +NLIP+NP +Y S + D++ F + +K++G + IR G D Sbjct: 277 QLADLLKDKKKLAYVNLIPYNPVSEHDQYSRSPKADVLRFYDVLKKNGVNCVIRKEHGTD 336 Query: 358 ILAACGQLKS 367 I AACGQL+S Sbjct: 337 IDAACGQLRS 346 >gi|254457165|ref|ZP_05070593.1| radical SAM enzyme, Cfr family [Campylobacterales bacterium GD 1] gi|207085957|gb|EDZ63241.1| radical SAM enzyme, Cfr family [Campylobacterales bacterium GD 1] Length = 359 Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 139/374 (37%), Positives = 219/374 (58%), Gaps = 38/374 (10%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SL+ ++EL+ L+K G R +QI+ W+Y + F M ++ + +R L Sbjct: 5 KPSLLDFTKKELQ-TLIKPG-------FRVNQIFGWLYHQYAESFDDMKNVPKALREELA 56 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEI-----------ETVYIPEKSRG 114 + + + IV++++S DGT K+LL+ G +E E + ++++ Sbjct: 57 EKYVVNPLTIVNKEVSTDGTIKYLLQMQD---GKTMEAVWLKMKDTQLDENAEVIQEAKY 113 Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 T+CVS+QVGC + CSFC T R+LTA EI+ QV+ + C++ Sbjct: 114 TICVSTQVGCKVGCSFCLTAKGGFTRDLTAGEIVAQVVTLK--------CDNDHKH---- 161 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE- 233 RKI NIV MGMGEPL N DN+ K++ I + GL S +R T+STSG I ++G+ Sbjct: 162 -NRKI-NIVYMGMGEPLDNLDNLAKAIEIFKEDDGLCISGKRQTVSTSGLSNKIDQLGKM 219 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++GV +AISLHAV ++LR L+P+N+ + + +I+A + +P + +R+ FEY+++KG N Sbjct: 220 DLGVHIAISLHAVDDELRTELIPMNKAHNINSIIEAVKRFP-IDTRKRVMFEYLVIKGKN 278 Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353 D A L+K+L GI AK+NLI FNP+PG +Y ++D+VTF++ + + G IR Sbjct: 279 DDLGSAKKLVKLLHGIKAKVNLIYFNPYPGTDYDRPSKEDMVTFADYLIKHGLLCTIRDS 338 Query: 354 RGLDILAACGQLKS 367 +G+DI AACGQLK Sbjct: 339 KGIDISAACGQLKE 352 >gi|307297434|ref|ZP_07577240.1| radical SAM enzyme, Cfr family [Thermotogales bacterium mesG1.Ag.4.2] gi|306916694|gb|EFN47076.1| radical SAM enzyme, Cfr family [Thermotogales bacterium mesG1.Ag.4.2] Length = 339 Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 131/334 (39%), Positives = 190/334 (56%), Gaps = 25/334 (7%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93 R +QI+KW+Y + + DF M+D+ +R+ L F + V+ +IS DGT K+LL+ Sbjct: 25 RANQIFKWVYAKRVLDFSEMTDLPMNLRNKLGSLFRFTTMKEVERQISIDGTEKFLLK-- 82 Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153 + IETV + T C+SSQVGC+L CSFC TG R+L+A EI+ QV+L Sbjct: 83 ---LEDDNHIETVVLKHPRHVTFCISSQVGCALNCSFCATGASGFTRDLSASEIVSQVIL 139 Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213 + S+GR + NIV MGMGEP N NV K++ I D +G + Sbjct: 140 MEN-----------------SIGRPVDNIVFMGMGEPFLNEANVYKAIKILHDPVGRNLG 182 Query: 214 KRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 R T+ST+G I R+ + + V L++SLH+ S + R+ L+PIN+KYPL+ L + Sbjct: 183 IRHFTISTAGIPEGIKRLADSGMDVRLSVSLHSASEETRSSLMPINKKYPLDSLRKVLDY 242 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y RITFEY ++KG+NDS D L + L GI + +N+IP NP SD + Sbjct: 243 YQQ-KTGNRITFEYALIKGVNDSKEDLTKLGEFLTGIKSFVNIIPVNPVKPVFDRPSD-R 300 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +I FSE +K++G+ +R +G DI AACGQL+ Sbjct: 301 EIAVFSESLKKAGFECAVRHEKGTDIEAACGQLR 334 >gi|253682293|ref|ZP_04863090.1| radical SAM enzyme, Cfr family [Clostridium botulinum D str. 1873] gi|253562005|gb|EES91457.1| radical SAM enzyme, Cfr family [Clostridium botulinum D str. 1873] Length = 343 Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 130/337 (38%), Positives = 195/337 (57%), Gaps = 25/337 (7%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE-KISCDGTRKWLL 90 + R QI++WIY + F M++IS+ + L F I P I+ + K + DGT K+L Sbjct: 23 KFRAKQIFEWIYKKSAFSFHEMTNISKASKEKLKNSFYIEIPNIIKKYKSNIDGTEKFLF 82 Query: 91 RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150 + I IE+V + K ++CVS+Q+GC + C FC + + +VRNLT+ EI+ Q Sbjct: 83 EYKDGNI-----IESVVMRYKHGNSICVSTQIGCRMGCKFCASTVEGVVRNLTSGEIVAQ 137 Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210 +L A+ +G +ISN+V+MG GEPL N+DNV K + + +D L Sbjct: 138 ILKAQQ-----------------EIGERISNVVLMGSGEPLDNYDNVVKFIKLINDDNAL 180 Query: 211 SFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 +R ITLST G VP I + +E + + LAISLHA ++++R ++P+ KY ++ L+DA Sbjct: 181 KIGQRHITLSTCGIVPKIKELADEKLQITLAISLHAPNDEIRKSMMPVANKYNIKELLDA 240 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 C++Y ++N RRITFEY ++ GINDS ++A L LKGI +NLIP N +Y S Sbjct: 241 CKYYSRITN-RRITFEYALVNGINDSAKNAEELFNQLKGILCHVNLIPVNEIKENDYKRS 299 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 K+I F + + G + IR G DI ACGQL+ Sbjct: 300 RAKNIEEFKNILIKYGIETTIRREMGSDINGACGQLR 336 >gi|297617050|ref|YP_003702209.1| radical SAM enzyme, Cfr family [Syntrophothermus lipocalidus DSM 12680] gi|297144887|gb|ADI01644.1| radical SAM enzyme, Cfr family [Syntrophothermus lipocalidus DSM 12680] Length = 371 Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 138/367 (37%), Positives = 211/367 (57%), Gaps = 21/367 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ LIGM + +LE + +G R+ Q+++W+Y + +F+ M+D+ +++R + Sbjct: 2 KKELIGMTKTDLESMVKSLGGEA----FRSRQLYRWLYKNLVFEFENMTDLPRDLRDRVK 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE----KSRGTLCVSSQ 121 Q SI P + E+IS DGT K LL + +E V IP+ + R TLC+SSQ Sbjct: 58 QVASITLPVVERERISRDGTVKVLL-----GLQDGQHVEMVMIPQTRAGRHRYTLCISSQ 112 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC + C FC TG VRNL EI QVLL L + E +++N Sbjct: 113 VGCPIGCPFCATGRSGFVRNLAVNEITGQVLLGLLRLRNSNTFE------TQGSATRLTN 166 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240 +V MGMGEP N+ V K + + +D GL+ +R IT+ST+G V I R+ +E + V LA Sbjct: 167 VVFMGMGEPFLNYSAVMKCIRLMNDPDGLNIGQRHITVSTAGEVRGIRRLAQEGLQVTLA 226 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLH+ +++R+ LVP+NRKYPL L +A R Y G++ RR+T EYV+L+G+N S +D Sbjct: 227 VSLHSARDEVRDWLVPLNRKYPLSELEEALRFYCGVTK-RRVTLEYVLLEGVNTSRQDVA 285 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 +LI + + +NLIP+N E+ ++ F + +K +G +S +R RG DI Sbjct: 286 SLIDFARPLLCNVNLIPYNQIEKAEFRRPSPSTVLRFQQWLKEAGVNSVVREERGGDIEG 345 Query: 361 ACGQLKS 367 ACGQL++ Sbjct: 346 ACGQLRA 352 >gi|46581308|ref|YP_012116.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio vulgaris str. Hildenborough] gi|81404173|sp|Q727F1|RLMN_DESVH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|46450729|gb|AAS97376.1| radical SAM enzyme, Cfr family [Desulfovibrio vulgaris str. Hildenborough] gi|311234971|gb|ADP87825.1| radical SAM enzyme, Cfr family [Desulfovibrio vulgaris RCH1] Length = 364 Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 141/365 (38%), Positives = 204/365 (55%), Gaps = 27/365 (7%) Query: 9 LIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 ++ + EELE + ++G P R R Q+W+W++ + R F M+++S+ R L + Sbjct: 4 ILNLTYEELEAFMTAELGEP----RFRARQVWQWLWQKCARSFDEMTNVSKATRARLAEK 59 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTL----CVSSQV 122 I +PE+ + S DGT K+LLR + +ETV IP SR GTL C+S QV Sbjct: 60 AVITWPEVETVQKSADGTTKFLLRLADGAL-----VETVLIPSASREGTLRITQCLSCQV 114 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC++ C+FC TGT RN+T EIL QVL+AR+ LGD I + N+ Sbjct: 115 GCAMGCTFCSTGTMGFERNMTMGEILGQVLVARAHLGDSRPDHPI-----------LRNL 163 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 V MGMGEPL N + V +SL +D GLSFS RRIT+ST G + +GE LA+S Sbjct: 164 VFMGMGEPLLNLNEVMRSLRTLNDEFGLSFSPRRITVSTCGIEKGLRELGESGLAFLAVS 223 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA + ++R ++P + L+ LI A YP L R+TFEY++L G+ND A L Sbjct: 224 LHAPNQEIRKRIMPKAAHWHLDDLITALESYP-LKTRERVTFEYLLLGGVNDGIEHAREL 282 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++++ K+NLI +NP G Y + I+ F + + ++ IR +G DI AAC Sbjct: 283 VRLVSRTKGKLNLIVYNPAEGDPYDAPTPERILAFEQYLWSKNITAIIRKSKGQDIKAAC 342 Query: 363 GQLKS 367 GQLK+ Sbjct: 343 GQLKA 347 >gi|317485889|ref|ZP_07944749.1| cfr family radical SAM enzyme [Bilophila wadsworthia 3_1_6] gi|316922863|gb|EFV44089.1| cfr family radical SAM enzyme [Bilophila wadsworthia 3_1_6] Length = 404 Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 133/345 (38%), Positives = 193/345 (55%), Gaps = 22/345 (6%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 + R +Q+W+WI+ + F M+D+S+++R L + I+ PEIV + S DGT K LLR Sbjct: 71 KFRAAQVWQWIWQKHATSFDAMTDVSKQLRAKLAEVAEIVLPEIVTVQTSSDGTEKLLLR 130 Query: 92 FPARCIGGPVEIETVYIPEKS-----RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEE 146 + +ETV +P R CVSSQ+GC++ C+FC TGT +RN+TA E Sbjct: 131 LRDGAL-----VETVILPSTGQDGSVRIAQCVSSQIGCAMGCTFCSTGTMGFIRNMTAGE 185 Query: 147 ILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD 206 IL QVL+AR LGD I+ +I N+V MGMGEPL N ++L + + Sbjct: 186 ILSQVLVARMRLGD----NRIDHPII-------RNLVFMGMGEPLLNLRETTRALEMLNH 234 Query: 207 SMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEML 266 G+ FS RRIT+ST G + +G+ LA+SLHA + DLR ++P + L+ L Sbjct: 235 DKGMDFSPRRITVSTCGIKAGLRELGDSGLAFLAVSLHAPNQDLRAKIMPKAANWHLDDL 294 Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 + YP L ITFEY++L G+ND P A L K++ + K+NLI +NP Y Sbjct: 295 MATLESYP-LKTREHITFEYLLLGGVNDQPEHARELAKLVSRVKGKLNLIAYNPSETQLY 353 Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 + DI+ F + + G ++ +R +G DI AACGQLKS +R Sbjct: 354 KAPTEADILAFEKILWSKGVTAILRKSKGQDIKAACGQLKSDWER 398 >gi|319760652|ref|YP_004124590.1| Ribosomal RNA large subunit methyltransferase N [Candidatus Blochmannia vafer str. BVAF] gi|318039366|gb|ADV33916.1| Ribosomal RNA large subunit methyltransferase N [Candidatus Blochmannia vafer str. BVAF] Length = 359 Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 146/372 (39%), Positives = 210/372 (56%), Gaps = 28/372 (7%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 LKK +L+ M ++L K+G R+ QI WIY + DF M+++ +++R Sbjct: 2 MLKKINLLDMSPKKLLVFFNKLG----ECAFRSDQIMDWIYKKYCSDFNKMTNLHKDLRV 57 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 LNQ I P I E+ S DGTRKW++R I +ETVYIP+ +R TLC+SSQ Sbjct: 58 KLNQISEINAPIITHEQESSDGTRKWMMR-----IHDDKYVETVYIPDNNRATLCISSQS 112 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF-----PGCEDIEGMVIPSVGR 177 GC+L CSFC T ++NL EI+ QV + + C ++ IP Sbjct: 113 GCALGCSFCGTAKLGFIKNLRTSEIVGQVWRIARFISHYNKQQVKNCNNL----IP---- 164 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 I++IV MGMGEPL N NV S+ I +S G + SK +TLSTSG VP I ++ + + V Sbjct: 165 -ITHIVFMGMGEPLLNLMNVVSSIQIILNSSGFNLSKHHVTLSTSGVVPGIDKLKDMVDV 223 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY--PGLSNARRITFEYVMLKGINDS 295 LA+SLHA ++ +RN ++PIN+KY ++ L+ + R Y SN +++T EYV+L IND Sbjct: 224 SLAVSLHAPNDVIRNKIMPINKKYNIDCLLQSIRCYLQKTKSNNKKVTIEYVLLNRINDE 283 Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYL--CSDQKDIVTFSECIKRSGYSSPIRTP 353 A L K L +P K+NL+ +N +YL SD + + F + +K G + IR Sbjct: 284 IEHAHELAKKLITLPCKVNLMRWNSIKNIKYLKSTSDAR-LNNFYKVLKNYGIVTTIRKV 342 Query: 354 RGLDILAACGQL 365 RG DI A+CGQL Sbjct: 343 RGADIHASCGQL 354 >gi|328951573|ref|YP_004368908.1| Ribosomal RNA large subunit methyltransferase N [Marinithermus hydrothermalis DSM 14884] gi|328451897|gb|AEB12798.1| Ribosomal RNA large subunit methyltransferase N [Marinithermus hydrothermalis DSM 14884] Length = 353 Score = 236 bits (603), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 133/333 (39%), Positives = 186/333 (55%), Gaps = 21/333 (6%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93 R QI W+Y G+R+F M+D+ + +R L + I +V S DG+ K+L Sbjct: 36 RKRQIAHWLYAWGVREFDEMTDLPRALRAELAHTWRISEFSLVQAFPSADGSTKYLY--- 92 Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153 + + E VY+P K R T+C+SS VGC C+FC TG + RNLTA EIL Q+L Sbjct: 93 --TLHDGRQTEAVYMPYKDRRTICISSMVGCPAGCTFCATGQMRFGRNLTAPEILDQLLA 150 Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213 A G P R+I N+V+MGMGEPL N NV K++ L+ S Sbjct: 151 AAYHQGISP--------------REIRNVVLMGMGEPLLNLTNVLKAVRRMIHKQALAMS 196 Query: 214 KRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 RRITLST G I R+ EE +GV LA+SLHA ++ R ++P +Y +E ++DA RH Sbjct: 197 PRRITLSTVGIPRGIYRLAEEDVGVKLALSLHAPDDETRRRIIPTAHRYAIEEIMDAVRH 256 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + RR+T EY +L+G+ND A L K +G+ A +NLIPFNPW G + S ++ Sbjct: 257 YYRRTK-RRVTLEYTLLRGVNDHLWQAKMLAKHTRGLTAHVNLIPFNPWEGAPHEGSSRE 315 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F+ ++ +G +R RG D+ AACGQL Sbjct: 316 QIRRFAAVLEAAGIPVSVRWSRGRDVGAACGQL 348 >gi|182420424|ref|ZP_02951644.1| radical SAM enzyme, Cfr family [Clostridium butyricum 5521] gi|237668483|ref|ZP_04528467.1| radical SAM enzyme, Cfr family [Clostridium butyricum E4 str. BoNT E BL5262] gi|182375710|gb|EDT73310.1| radical SAM enzyme, Cfr family [Clostridium butyricum 5521] gi|237656831|gb|EEP54387.1| radical SAM enzyme, Cfr family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 347 Score = 236 bits (603), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 138/336 (41%), Positives = 195/336 (58%), Gaps = 26/336 (7%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD-EKISCDGTRKWLLR 91 R QI WIY +G+ DF+GM +I + + + L ++F+I PEIV+ K DGT K+LL Sbjct: 24 FRGKQILSWIY-KGVMDFKGMKNIPKSLINKLEENFTITMPEIVEVYKSELDGTEKFLLG 82 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 F + IE+V + K ++C+S+QVGC + C FC + + VRNLT EIL +V Sbjct: 83 FSDGNL-----IESVLMRYKHGNSICISTQVGCRMGCKFCASTIEGRVRNLTTGEILSEV 137 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 + ++ +G+ +ISNIV+MG GEPL N+DNV K L I S GL+ Sbjct: 138 IAVQNYIGE-----------------RISNIVLMGSGEPLDNYDNVVKFLEIVSADYGLN 180 Query: 212 FSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 +R ITLST G VP I + + E+ + LAISLHA S++ R ++PI KY + L++AC Sbjct: 181 IGQRHITLSTCGIVPKIYELADKELSITLAISLHAFSDEKRKEIMPIANKYTISELLEAC 240 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 R+Y RRITFEY ++K +ND DA L K+L G+ +NLIP N + S Sbjct: 241 RYYLN-KTKRRITFEYALVKDVNDGMEDAKALGKLLSGMLCHVNLIPVNEIKENSFKRSS 299 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +K I FSE ++ +G R G DI AACGQL+ Sbjct: 300 KKAIDDFSEILRNNGIEVTTRREMGSDINAACGQLR 335 >gi|120601511|ref|YP_965911.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio vulgaris DP4] gi|205829747|sp|A1VAL8|RLMN_DESVV RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|120561740|gb|ABM27484.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfovibrio vulgaris DP4] Length = 364 Score = 236 bits (603), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 141/365 (38%), Positives = 204/365 (55%), Gaps = 27/365 (7%) Query: 9 LIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 ++ + EELE + ++G P R R Q+W+W++ + R F M+++S+ R L + Sbjct: 4 ILNLTYEELEAFMTAELGEP----RFRARQVWQWLWQKCARSFDEMTNVSKATRARLAEK 59 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTL----CVSSQV 122 I +PE+ + S DGT K+LLR + +ETV IP SR GTL C+S QV Sbjct: 60 AVITWPEVETVQKSADGTTKFLLRLADGAL-----VETVLIPSASREGTLRITQCLSCQV 114 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC++ C+FC TGT RN+T EIL QVL+AR+ LGD I + N+ Sbjct: 115 GCAMGCTFCSTGTMGFERNMTMGEILGQVLVARAHLGDSRPDHPI-----------LRNL 163 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 V MGMGEPL N + V +SL +D GLSFS RRIT+ST G + +GE LA+S Sbjct: 164 VFMGMGEPLLNLNEVMRSLRTLNDEFGLSFSPRRITVSTCGIEKGLRELGESGLAFLAVS 223 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA + ++R ++P + L+ LI A YP L R+TFEY++L G+ND A L Sbjct: 224 LHAPNQEIRKRIMPKAAHWHLDDLITALESYP-LKTRERVTFEYLLLGGVNDGIEHAREL 282 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++++ K+NLI +NP G Y + I+ F + + ++ IR +G DI AAC Sbjct: 283 VRLVSRTKGKLNLIVYNPAEGDPYDAPTPERILAFEQYLWSKNITAIIRKSKGQDIKAAC 342 Query: 363 GQLKS 367 GQLK+ Sbjct: 343 GQLKA 347 >gi|315640014|ref|ZP_07895140.1| cfr family radical SAM enzyme [Enterococcus italicus DSM 15952] gi|315484223|gb|EFU74693.1| cfr family radical SAM enzyme [Enterococcus italicus DSM 15952] Length = 359 Score = 236 bits (603), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 136/358 (37%), Positives = 214/358 (59%), Gaps = 28/358 (7%) Query: 26 IPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI--IYPEIVDEKISCD 83 + Q + R +Q+W+W+Y + ++ F M+++S+ L++ F I ++ +V E + D Sbjct: 24 LEQGEKKFRATQLWEWLYQKRVQSFTQMTNLSKGFIEKLDETFIINPLHQVVVQE--AQD 81 Query: 84 GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLT 143 GT K+L + P + IETV + ++ ++CV++QVGC++ C+FC +G K R+LT Sbjct: 82 GTVKYLFQLPDNHM-----IETVMMTQEYGLSVCVTTQVGCNIGCTFCASGILKKQRDLT 136 Query: 144 AEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI 203 A EI+ Q++L + L D + G ++S+IV+MG+GEP N+ NV L+I Sbjct: 137 AGEIVAQIMLVQHYLDD------------KNEGSRVSHIVVMGIGEPFDNYQNVMNFLTI 184 Query: 204 ASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYP 262 +D+ GL+ R IT+STSG VP I E + V LAISLHA +ND+R ++ INR +P Sbjct: 185 VNDAKGLAIGARHITVSTSGLVPKIREFAENGLQVNLAISLHAPNNDVRTSIMRINRTFP 244 Query: 263 LEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNP 320 +E L+DA +Y +N RRITFEY+ML +ND A L +LK +NLIP+NP Sbjct: 245 IEKLMDAVDYYLEKTN-RRITFEYIMLSHVNDRVEHAQQLADLLKDKKKLTYVNLIPYNP 303 Query: 321 WPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPR 377 +Y S + D++ F + +K++G + IR G DI AACGQL+ SK++ +V R Sbjct: 304 VSEHDQYARSSRNDVMKFYDVLKKNGINCVIRKEYGTDIDAACGQLR--SKQMKQVAR 359 >gi|114776700|ref|ZP_01451743.1| radical SAM superfamily protein [Mariprofundus ferrooxydans PV-1] gi|114552786|gb|EAU55217.1| radical SAM superfamily protein [Mariprofundus ferrooxydans PV-1] Length = 357 Score = 236 bits (603), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 129/360 (35%), Positives = 199/360 (55%), Gaps = 25/360 (6%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L GM ++L G+ H + I++ + D D+ +R L +H Sbjct: 7 LNGMNHDQLLALCGAAGVSPAHADRLRAAIFR--HYGSDTDINNTPDLPLRLRSYLAEHT 64 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 +++ P DGTRK LL + E+ETV IP R T C+S+QVGC++ C Sbjct: 65 ALLQPASTATSEGEDGTRKLLL-----AMADGREVETVLIPGNGRLTQCISTQVGCAVGC 119 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 +FC T T L RNLTA E++ +V + + GR++ N+V+MGMG Sbjct: 120 TFCLTATAGLTRNLTAAEMVAEVTAGQRI-----------------SGRQVRNLVLMGMG 162 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLAISLHAVS 247 EPL N+D V + +A+D G++FS R+TLSTSG VP + R + +E+ LA+SL+A + Sbjct: 163 EPLHNYDEVAHFVRLATDPKGMAFSPNRVTLSTSGLVPAMQRMIRDELPCNLAVSLNATN 222 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 + +R+ ++PINRKYP+ ML+D R Y + +R+ EYV+L GINDS DA+ L +++ Sbjct: 223 DAVRDTIMPINRKYPIAMLLDTVREYIRVRGNKRVLIEYVLLDGINDSQADAIRLCELMA 282 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 G+ +NL+PFN +PG + + F + +G + +R +G DI AACGQLK+ Sbjct: 283 GMGCTVNLLPFNAYPGLPFQRPADAAVSAFRAILVEAGIITVVRESKGRDIAAACGQLKT 342 >gi|227552455|ref|ZP_03982504.1| Fe-S-cluster redox enzyme [Enterococcus faecium TX1330] gi|257888305|ref|ZP_05667958.1| ribosomal RNA large subunit methyltransferase N [Enterococcus faecium 1,141,733] gi|257896805|ref|ZP_05676458.1| ribosomal RNA large subunit methyltransferase N [Enterococcus faecium Com12] gi|257899742|ref|ZP_05679395.1| ribosomal RNA large subunit methyltransferase N [Enterococcus faecium Com15] gi|293378566|ref|ZP_06624729.1| radical SAM enzyme, Cfr family [Enterococcus faecium PC4.1] gi|293573136|ref|ZP_06684073.1| radical SAM enzyme, Cfr family [Enterococcus faecium E980] gi|227178412|gb|EEI59384.1| Fe-S-cluster redox enzyme [Enterococcus faecium TX1330] gi|257824359|gb|EEV51291.1| ribosomal RNA large subunit methyltransferase N [Enterococcus faecium 1,141,733] gi|257833370|gb|EEV59791.1| ribosomal RNA large subunit methyltransferase N [Enterococcus faecium Com12] gi|257837654|gb|EEV62728.1| ribosomal RNA large subunit methyltransferase N [Enterococcus faecium Com15] gi|291606774|gb|EFF36159.1| radical SAM enzyme, Cfr family [Enterococcus faecium E980] gi|292642895|gb|EFF61042.1| radical SAM enzyme, Cfr family [Enterococcus faecium PC4.1] Length = 355 Score = 236 bits (603), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 136/370 (36%), Positives = 222/370 (60%), Gaps = 30/370 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K+S+ G+ EEL ++ G + R +Q+W+W+Y + + +F M+++S+++ Sbjct: 1 MEKQSIYGLTNEELINWFIENG----EKKFRAAQVWEWLYQKRVSNFTEMTNLSKQLIEK 56 Query: 64 LNQHFSIIYP--EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L+ HF II P ++V ++ S DGT K+L P + + IETV + ++ ++CV++Q Sbjct: 57 LSAHF-IINPLKQMVVQEAS-DGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQ 109 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC++ C+FC +G K R+LTA EI+ Q+++ + + ++G ++S+ Sbjct: 110 VGCNIGCTFCASGLLKKNRDLTAGEIVAQIMMVQHYFDE------------RNLGERVSH 157 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240 +V+MG+GEP N+DNV L I +D+ GL+ R IT+STSG I + V LA Sbjct: 158 VVVMGIGEPFDNYDNVMDFLHIINDAKGLAIGARHITVSTSGLAHKIKEFANNGLQVNLA 217 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ISLHA +N++R ++ INR +P+E L++A Y +N RRITFEY+ML +ND P A Sbjct: 218 ISLHAPNNEVRTSIMRINRSFPIEKLMEAVDEYLEKTN-RRITFEYIMLNQVNDRPEHAQ 276 Query: 301 NLIKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 L +LK A +NLIP+NP +Y S + D++ F + +K++G + IR G D Sbjct: 277 QLADLLKDKKKLAYVNLIPYNPVSEHDQYSRSPKADVLRFYDVLKKNGVNCVIRKEHGTD 336 Query: 358 ILAACGQLKS 367 I AACGQL+S Sbjct: 337 IDAACGQLRS 346 >gi|255323622|ref|ZP_05364752.1| radical SAM enzyme, Cfr family [Campylobacter showae RM3277] gi|255299336|gb|EET78623.1| radical SAM enzyme, Cfr family [Campylobacter showae RM3277] Length = 363 Score = 236 bits (602), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 140/348 (40%), Positives = 203/348 (58%), Gaps = 34/348 (9%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI++W+Y + F M ++ +++R L Q F + + V + S DG+ K+L Sbjct: 20 FRAKQIFEWLYKKNATSFDEMLNLPKDLRANLVQEFYLDPLKCVKFERSADGSIKYLFE- 78 Query: 93 PARCIGGPVEIETVYIPEK-------------SRGTLCVSSQVGCSLTCSFCYTGTQKLV 139 + + IE+V +P K +R T+CVSSQVGC + CSFC TG L Sbjct: 79 ----LKDGLRIESVLLPMKEELNDENGEVTRHARYTICVSSQVGCRMGCSFCLTGKSGLT 134 Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199 RNLT EI+ Q+L C E IP R N+V MGMGEPL N +NV K Sbjct: 135 RNLTPGEIVGQIL-----------CIKRENK-IPYERR--VNVVYMGMGEPLDNLENVSK 180 Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPIN 258 ++ I ++ GL+ + RR T+STSG I ++GE ++GV+LAISLHAV+N+LR+ L+PIN Sbjct: 181 AIKILKENDGLAITPRRQTVSTSGLGSQIKKLGEMDLGVLLAISLHAVTNELRSKLMPIN 240 Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318 Y +E +++A R +P + +R+ FEY+++K +ND +DA L+ +L GI AK+NLI F Sbjct: 241 NAYKIESVMEAVRGFP-IDMRKRVMFEYLVIKDMNDGIKDAKKLVSLLHGIKAKVNLIYF 299 Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 NP G EY + D+ F ++ G + IR +GLDI AACGQLK Sbjct: 300 NPHEGSEYGRPNTADMEAFQTYLRDHGVTCTIRQSKGLDISAACGQLK 347 >gi|239904707|ref|YP_002951445.1| hypothetical protein DMR_00680 [Desulfovibrio magneticus RS-1] gi|259491985|sp|C4XTP4|RLMN_DESMR RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|239794570|dbj|BAH73559.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 351 Score = 236 bits (602), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 134/360 (37%), Positives = 201/360 (55%), Gaps = 22/360 (6%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +LI + ELE ++ +G P R Q+W+W++ + R+ GM+D+S+ +R L + Sbjct: 3 NLIDLTFHELESLIVSLGEPP----YRARQVWQWLWQKRCREIAGMTDVSKALRARLEEV 58 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 I +P + + S DGT K+LL + +E V IPEK T C+S+QVGC++ Sbjct: 59 AEIRWPVVEMVRESRDGTVKFLL-----ALDDGERVECVLIPEKDHYTACLSTQVGCAMG 113 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC TG RN+T E+L QVL+ R L D V + N+V MGM Sbjct: 114 CGFCATGMLGFRRNMTPGEMLGQVLVGRQYLTD------------KGVELGLRNLVFMGM 161 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL N++N+ K+L GL FS RRIT+ST+G ++ +G LAISLHA + Sbjct: 162 GEPLLNYENLLKTLEALHHPQGLDFSGRRITVSTAGVARHLLDLGRTGLCSLAISLHAPT 221 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 R ++P + L+ L+D YP L R+TFEY++L G+ND+ DA L+++L Sbjct: 222 QAQRERIMPGAARLELDKLMDLLAQYP-LKPRERLTFEYLLLAGVNDADADARELVRLLS 280 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 + AK+NLI FN PG Y D+ ++ F + +K G ++ +R +G DI AACGQL++ Sbjct: 281 RVKAKVNLIVFNATPGLPYSPPDEARVLAFQDILKSKGLTATLRKSKGSDIAAACGQLRA 340 >gi|115438803|ref|NP_001043681.1| Os01g0640800 [Oryza sativa Japonica Group] gi|113533212|dbj|BAF05595.1| Os01g0640800 [Oryza sativa Japonica Group] gi|218188735|gb|EEC71162.1| hypothetical protein OsI_03021 [Oryza sativa Indica Group] gi|222618932|gb|EEE55064.1| hypothetical protein OsJ_02780 [Oryza sativa Japonica Group] Length = 405 Score = 236 bits (601), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 140/360 (38%), Positives = 199/360 (55%), Gaps = 26/360 (7%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGI--RDFQGMSDISQEVRHLLNQ 66 L GM ELE + G M +WK +Y + + ++ ++++ R +L Sbjct: 48 LKGMDYPELENWVRSQGFRPGQAMM----LWKCLYGNNVWAHCYDELAGLNKDFRKMLTD 103 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQVGCS 125 H + + D + DGTRK L + IETV IP S R T+CVSSQVGC+ Sbjct: 104 HADLKALTVKDILNASDGTRKILFSLEDGSV-----IETVVIPCTSGRTTVCVSSQVGCA 158 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC+TG L ++L+ EI+ Q + AR L D G I+N+V M Sbjct: 159 MNCQFCFTGRMGLRKHLSTAEIVEQAVFARRLFSDEFG--------------SITNVVFM 204 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N DNV K+ +I D GL FS R++T+STSG VP I R +E LA+SL+A Sbjct: 205 GMGEPLHNIDNVLKASAIMVDEQGLQFSPRKVTVSTSGLVPQIKRFLQESNCALAVSLNA 264 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++RN ++PINRKY L +L+ R L ++ FEYVML G+NDS DA L+ + Sbjct: 265 TTDEVRNWIMPINRKYNLSLLLGTLREEIRLKKKYKVFFEYVMLAGVNDSVDDAKRLVDL 324 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 ++GIP KINLI FNP G ++ + + I+ F + + G +R RG D +AACGQL Sbjct: 325 VRGIPCKINLISFNPHSGSQFKPTPDEKIIEFRNILIQDGLVVFVRLSRGDDQMAACGQL 384 >gi|332686368|ref|YP_004456142.1| ribosomal RNA large subunit methyltransferase N [Melissococcus plutonius ATCC 35311] gi|332370377|dbj|BAK21333.1| ribosomal RNA large subunit methyltransferase N [Melissococcus plutonius ATCC 35311] Length = 357 Score = 236 bits (601), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 127/372 (34%), Positives = 220/372 (59%), Gaps = 30/372 (8%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 + ++K+++ G+ +E L L+ G + R +Q+W+W+Y++ + F+ M+++S+ + Sbjct: 4 DIMQKQTIYGLTKEALVNWFLENG----EKKFRANQVWEWLYIKRVESFEDMTNLSKTLI 59 Query: 62 HLLNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119 LL+QHF ++ I+ E + DGT K+L P + + IETV + ++ ++CV+ Sbjct: 60 SLLDQHFVIQVLRQTIIQE--AKDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVT 112 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 +QVGC++ C+FC +G K RNLTA EI+ Q+++ + +G ++ Sbjct: 113 TQVGCNMGCTFCASGLLKKNRNLTAGEIVAQIMMVQRYFDQ------------RKLGERV 160 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238 S++V+MG+GEP N++ + + + I +D GL+ R +T+ST G VP I + + + V Sbjct: 161 SHVVVMGIGEPFDNYEQLMQFIQIINDEKGLAIGARHLTVSTCGLVPQIKKFAQTGLQVN 220 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LAISLHA +N +R+ ++ IN +P+E L+ Y +N RR+TFEY+ML+ +ND P Sbjct: 221 LAISLHASNNQIRSSIMRINHTFPIEKLMQTIDEYIEQTN-RRVTFEYIMLQKVNDYPEH 279 Query: 299 ALNLIKILKGIP--AKINLIPFNPWPGCEYLC-SDQKDIVTFSECIKRSGYSSPIRTPRG 355 A L +LK A +NLIP+NP + C S++ ++ F + +K++G + IR G Sbjct: 280 AQELADLLKDKKKLAYVNLIPYNPVNEHDQYCRSEKASVLKFYDILKKNGINCVIRKEHG 339 Query: 356 LDILAACGQLKS 367 DI AACGQL+S Sbjct: 340 TDIDAACGQLRS 351 >gi|315658497|ref|ZP_07911369.1| cfr family radical SAM enzyme [Staphylococcus lugdunensis M23590] gi|315496826|gb|EFU85149.1| cfr family radical SAM enzyme [Staphylococcus lugdunensis M23590] Length = 364 Score = 236 bits (601), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 131/371 (35%), Positives = 209/371 (56%), Gaps = 25/371 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 K+S+ + +E+++ L++ G + R QI++W+Y + + F+ M+++S+++R L Sbjct: 16 FDKQSIYSLRFDEMQQWLVEQG----QQKFRAKQIYEWLYQKRVNSFEEMTNLSKDLRKL 71 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L HF + V ++ S DGT K+L + IETV + ++CV++QVG Sbjct: 72 LADHFVMTTLTTVVKQESKDGTIKFLFE-----LQDGYTIETVLMRHDYGNSVCVTTQVG 126 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C+FC + L RNL A EI+ QVL + L + ++S IV Sbjct: 127 CRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKAL--------------DATEERVSQIV 172 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242 +MG+GEP N+D + L I +D L+ R IT+STSG VP I EEI + A+S Sbjct: 173 IMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIVPRIYDFADEEIQINFAVS 232 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +D+R+ L+PINR Y ++ L++A R+Y +N RRITFEY + G+ND A L Sbjct: 233 LHAAKDDVRSKLMPINRAYNVDKLMEAIRYYQQKTN-RRITFEYGLFGGVNDQLEHAREL 291 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++K + +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AAC Sbjct: 292 AHLIKNLNCHVNLIPVNHVPERNYVKTSKDDIFKFEKELKRLGVNATIRREQGSDIDAAC 351 Query: 363 GQLKSLSKRIP 373 GQL++ +++ Sbjct: 352 GQLRAKERQVE 362 >gi|229545365|ref|ZP_04434090.1| Fe-S-cluster redox enzyme [Enterococcus faecalis TX1322] gi|307295833|ref|ZP_07575665.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0411] gi|229309472|gb|EEN75459.1| Fe-S-cluster redox enzyme [Enterococcus faecalis TX1322] gi|306496164|gb|EFM65743.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0411] gi|315028571|gb|EFT40503.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX4000] Length = 357 Score = 236 bits (601), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 137/379 (36%), Positives = 222/379 (58%), Gaps = 26/379 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++KES+ G+ RE+L + L G + R +Q+W+W+Y + + F MS+IS+ + L Sbjct: 1 MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNISKSLMTL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L ++FS+ + V + + DGT K+L P + + IETV + ++ ++CV++QVG Sbjct: 57 LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+LTA EI+ Q++ + D G ++ ++S++V Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYF-DERGLDE-----------RVSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+ NV L +D GL+ R IT+STSG VP I + + V LAIS Sbjct: 160 VMGIGEPFDNYVNVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N++R +++ INR +P+E L+ A Y +N RR+TFEY+ML +ND P A L Sbjct: 220 LHAPNNEVRTLIMRINRSFPIEKLMAAIDEYIEKTN-RRVTFEYIMLSQVNDRPEHAQQL 278 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 +L+ + +NLIP+NP +Y S ++ ++ F + +K++G + IR G DI Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338 Query: 360 AACGQLKSLSKRIPKVPRQ 378 AACGQL+S + KV Q Sbjct: 339 AACGQLRSKQMKKEKVKNQ 357 >gi|187734933|ref|YP_001877045.1| radical SAM enzyme, Cfr family [Akkermansia muciniphila ATCC BAA-835] gi|205829710|sp|B2UNF2|RLMN_AKKM8 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|187424985|gb|ACD04264.1| radical SAM enzyme, Cfr family [Akkermansia muciniphila ATCC BAA-835] Length = 359 Score = 236 bits (601), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 132/364 (36%), Positives = 208/364 (57%), Gaps = 32/364 (8%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 ++ + EE LL H + RT Q+ W++ + + F MS++ +++LL ++F Sbjct: 6 LITAQTEEKLLAFLTEHGHTKFRTQQVLDWVWRKRVTTFDAMSNLPPALKNLLAENFRFH 65 Query: 72 YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-------EKS-RGTLCVSSQVG 123 PEIV+ S D TRK+L + + +E+V IP EKS R TLCVSSQVG Sbjct: 66 TPEIVEIHGSADTTRKFLTKMEDGSL-----VESVIIPAAAAENGEKSERVTLCVSSQVG 120 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+ C FC +G L R+LT EI+ Q+L A ++ G++++NIV Sbjct: 121 CAFGCKFCASGLLGLKRHLTTGEIIGQILSAEAI-----------------AGKRVNNIV 163 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242 MGMGEPL NFDN+ +L I + GL R IT+STSGFVP + ++ + LA+S Sbjct: 164 FMGMGEPLSNFDNLADALEIITSHRGLEIGARHITISTSGFVPGLKKLAAYPRQIRLAVS 223 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LH ++++R+ ++P+N+K+PL LI A + N + T EY++++ INDSP+DA +L Sbjct: 224 LHGATDEVRDQIMPVNKKWPLSQLIPALEEWNRGRN-QMPTLEYILIRDINDSPKDASHL 282 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++I K + AK+NLIP+N G + ++ +F + + ++ +R +G DI AAC Sbjct: 283 VRIAKRLHAKVNLIPYNTVEGLPWKRPSEERCRSFRDAVHKARIPVTMRYEKGHDINAAC 342 Query: 363 GQLK 366 GQL+ Sbjct: 343 GQLR 346 >gi|315301572|ref|ZP_07872683.1| radical SAM enzyme, Cfr family [Listeria ivanovii FSL F6-596] gi|313630054|gb|EFR98076.1| radical SAM enzyme, Cfr family [Listeria ivanovii FSL F6-596] Length = 368 Score = 235 bits (600), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 140/382 (36%), Positives = 224/382 (58%), Gaps = 32/382 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K S+ G+ +L E L G + R +Q+W W+Y + ++ F+ MS++ +E L Sbjct: 2 MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 57 Query: 64 LNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L +F + + ++V E S DGT K+L + + IETV + ++ ++CV++Q Sbjct: 58 LMANFVMNTLEAQVVQE--STDGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQ 110 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC++ C+FC +G K R+LTA EI+ Q++ + L D + ++S+ Sbjct: 111 VGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYLDD------------RQLEERVSH 158 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLA 240 +V+MG+GEP N+DNV L + + GL+ R IT+STSG P I E+ V LA Sbjct: 159 VVVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLA 218 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ISLHA +N+LR ++ IN+ Y +E L++A +Y +N RRITFEY+MLKG+ND ++AL Sbjct: 219 ISLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVEKTN-RRITFEYIMLKGVNDHKKEAL 277 Query: 301 NLIKIL--KGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 L +L A +NLIP+NP +Y S ++D++ F + +K++G + IR G D Sbjct: 278 ELAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTD 337 Query: 358 ILAACGQLKSLSKRIPKVPRQE 379 I AACGQL+ SK+I +V +E Sbjct: 338 IDAACGQLR--SKQIKRVGVRE 357 >gi|319955823|ref|YP_004167086.1| 23S rRNA m(2)a-2503 methyltransferase [Nitratifractor salsuginis DSM 16511] gi|319418227|gb|ADV45337.1| 23S rRNA m(2)A-2503 methyltransferase [Nitratifractor salsuginis DSM 16511] Length = 370 Score = 235 bits (600), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 136/346 (39%), Positives = 201/346 (58%), Gaps = 30/346 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI+ WIY + F+ M+++ + +R L + + + E+V ++ S DG+ K+L R Sbjct: 33 FRAKQIYNWIYHKHADSFEEMANLPKTMRQELAKKYELHPLEMVSKQESRDGSIKYLFRL 92 Query: 93 PARCIGGPVEI------ETVY-----IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141 G VE E Y + R T+C+SSQVGC + C+FC T +RN Sbjct: 93 HD---GHTVEAVLLLMKEAQYHEDGTLKHHRRYTVCISSQVGCKVGCAFCLTAKGGFIRN 149 Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 L+A EI+ QVL E + IPS R N+V MGMGEPL N DNV K++ Sbjct: 150 LSAGEIVDQVL------------EIYKDQNIPSNHR--VNLVYMGMGEPLDNLDNVAKAV 195 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRK 260 I +D G+S S R T+STSG I ++G ++GV LAISLHAV ++LR L+PIN+ Sbjct: 196 KIFADMDGMSISPNRQTISTSGLSSKIEKLGRMDLGVNLAISLHAVDDELREKLMPINKA 255 Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 Y + +I+A R++P ++ +++ FEY+++K +ND A L+K+L G+ AK+NLI FNP Sbjct: 256 YNIASIIEAVRNFP-VNQRKKVLFEYLVIKHVNDDIASAKKLVKLLNGLKAKVNLIYFNP 314 Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +PG E+ + +D+ F E + G IR +GLDI AACGQL+ Sbjct: 315 YPGTEFERPEPEDMKRFQEYLLSKGVLCTIRESKGLDISAACGQLR 360 >gi|313680864|ref|YP_004058603.1| 23S rRNA m(2)a-2503 methyltransferase [Oceanithermus profundus DSM 14977] gi|313153579|gb|ADR37430.1| 23S rRNA m(2)A-2503 methyltransferase [Oceanithermus profundus DSM 14977] Length = 370 Score = 235 bits (600), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 131/333 (39%), Positives = 185/333 (55%), Gaps = 21/333 (6%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93 R QI W+Y +G R+F+ M+D+ + +R L Q + I +V S DG+ K+L Sbjct: 53 RKGQIASWLYKKGAREFEEMTDLPRRLREALEQDWRISEFALVQAFPSSDGSVKYLF--- 109 Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153 + E VY+P R T+C+SSQVGC C+FC TG RNLT EIL Q+L Sbjct: 110 --TLHDGRRTEAVYLPYADRKTVCISSQVGCPAGCTFCATGKMGFGRNLTGPEILDQILA 167 Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213 G P R+I N+V+MGMGEPL N++N+ ++ D L+ S Sbjct: 168 VAYHQGLGP--------------REIRNVVLMGMGEPLLNYENIAWAVRRMLDKNALAMS 213 Query: 214 KRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 RRITLST G I R+ E ++GV LA+SLHA ++ R ++P +Y + +++A R Sbjct: 214 PRRITLSTVGIPGGIRRLAEGDLGVKLALSLHAPDDETRRRIIPTAHRYSIAEIMEAVRA 273 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + RR+T EY ML+ +ND A L +ILKG+ A +NLIPFNPW G S +K Sbjct: 274 YFDRTK-RRVTIEYTMLRDVNDREEQARELARILKGLVAHVNLIPFNPWEGAPVAGSGKK 332 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F+ ++R G +R RG+D+ AACGQL Sbjct: 333 RIQRFAAVLEREGVPVTVRWSRGVDVGAACGQL 365 >gi|289433758|ref|YP_003463630.1| radical SAM family protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170002|emb|CBH26542.1| radical SAM family protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 367 Score = 235 bits (600), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 226/382 (59%), Gaps = 32/382 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K S+ G+ +L E L + G + R +Q+W W+Y + ++ F+ MS++ +E L Sbjct: 1 MEKSSIYGLTWTKLTEWLEEHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56 Query: 64 LNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L +F S + ++V E S DGT K+L + + IETV + ++ ++CV++Q Sbjct: 57 LTANFVMSTLEEQVVQE--STDGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQ 109 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC++ C+FC +G K R+LTA EI+ Q++ + L D E+ ++S+ Sbjct: 110 VGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYL-DGRNLEE-----------RVSH 157 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLA 240 +V+MG+GEP N+DNV L + + GL+ R IT+STSG P I E+ V LA Sbjct: 158 VVVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLA 217 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ISLHA +N+LR ++ IN+ Y +E L++A +Y +N RRITFEY+MLKG+ND ++AL Sbjct: 218 ISLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVEKTN-RRITFEYIMLKGVNDHKKEAL 276 Query: 301 NLIKIL--KGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 L +L A +NLIP+NP +Y S ++D++ F + +K++G + IR G D Sbjct: 277 ELAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTD 336 Query: 358 ILAACGQLKSLSKRIPKVPRQE 379 I AACGQL+ SK+I +V +E Sbjct: 337 IDAACGQLR--SKQIKRVGIRE 356 >gi|121533699|ref|ZP_01665526.1| radical SAM enzyme, Cfr family [Thermosinus carboxydivorans Nor1] gi|121307690|gb|EAX48605.1| radical SAM enzyme, Cfr family [Thermosinus carboxydivorans Nor1] Length = 350 Score = 235 bits (600), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 130/363 (35%), Positives = 207/363 (57%), Gaps = 26/363 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K ++ G +E+ + + + G+ + R QI +WIY RG+ F M+++ + R LL Sbjct: 2 KTNIFGYFAQEISDLIAQYGLE----KYRGRQIAEWIYRRGVSRFADMTNLPLKKRDLLA 57 Query: 66 QHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 ++F+I ++ + S DG T K+LL+F +ETV + +LCVS+QVGC Sbjct: 58 ENFTIDTVYVMAAQHSADGKTSKFLLKFT-----DGAAVETVLMRHSYGNSLCVSTQVGC 112 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC + Q + RNL+ EIL Q + +LL S ++++IV+ Sbjct: 113 GMGCIFCASTLQGVARNLSGGEILAQAIYVNNLL--------------LSAQTRLNSIVI 158 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG GEPL N+DNV + + + + L+ S R ITLST G VP + ++ E + + LA+SL Sbjct: 159 MGSGEPLANYDNVLRFIRLCHEPYCLNLSYRSITLSTCGLVPEMRKLAAEGLPITLAVSL 218 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +N+LR+ ++PINR+YP+E +++A +Y + RR+T+EY ++KG+ND A L Sbjct: 219 HAPNNELRSQIMPINRRYPIEEVVEAADYYAA-TTGRRVTYEYTLIKGVNDGLEQAYELA 277 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++L G A +NLI N P LC D+K I F + + R ++ +R G DI AACG Sbjct: 278 RLLAGRLANVNLIAVNAVPERGLLCPDEKQIAAFEQTLLRQNINTTVRRKMGADIQAACG 337 Query: 364 QLK 366 QL+ Sbjct: 338 QLR 340 >gi|251770958|gb|EES51543.1| radical SAM family protein [Leptospirillum ferrodiazotrophum] Length = 357 Score = 235 bits (600), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 142/343 (41%), Positives = 188/343 (54%), Gaps = 19/343 (5%) Query: 30 HVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ-HFSIIYPEIVDEKISCDGTRKW 88 H R Q+ W+Y R D + MS+I VR LL+ S+ P ++ S DGT K Sbjct: 20 HPAYRGRQVAHWVYQRLTTDPRKMSNIPPGVRDLLSSGTLSLDLPTVLSTAQSLDGTVKM 79 Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 LR GPV IE+V IP K + TLC+S+Q GC + C FC T + L RNL+ EIL Sbjct: 80 ALRLQ----DGPV-IESVLIPRKGQWTLCLSTQAGCGIGCRFCRTASMGLTRNLSTAEIL 134 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 Q LLA + P E I +IV MGMGEPL N + + ++ + Sbjct: 135 SQWLLAARFVETLPPGES-----------HIDHIVFMGMGEPLANLEALIPAIRSLTHPD 183 Query: 209 GLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267 G S RRIT+STSG VP I +GE GV LAISL A + LR ++P+ R Y +E ++ Sbjct: 184 GAGLSPRRITVSTSGLVPRIDTLGEANTGVRLAISLCAPDDALRREIMPVGRIYSIEEIL 243 Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL 327 ACR +P L N RITFEYV+L G+NDSP A L ++L +K+NLIPFNP+PG Y Sbjct: 244 AACRRFP-LRNRDRITFEYVLLAGVNDSPLQARQLGRLLAPFRSKVNLIPFNPFPGSPYH 302 Query: 328 CSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 + F E + ++ +R G D+LAACGQL S+ Sbjct: 303 RPTDSSVAAFQEVLAGFHITATVRKSMGPDVLAACGQLARESQ 345 >gi|257087248|ref|ZP_05581609.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|256995278|gb|EEU82580.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|315026051|gb|EFT37983.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX2137] Length = 357 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 137/379 (36%), Positives = 221/379 (58%), Gaps = 26/379 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++KES+ G+ RE+L + L G + R +Q+W+W+Y + + F MS+IS+ + L Sbjct: 1 MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNISKSLMTL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L ++FS+ + V + + DGT K+L P + + IETV + ++ ++CV++QVG Sbjct: 57 LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+LTA EI+ Q++ + D G ++ ++S++V Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYF-DERGLDE-----------RVSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+ NV L +D GL+ R IT+STSG VP I + + V LAIS Sbjct: 160 VMGIGEPFDNYANVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N++R ++ INR +P+E L+ A Y +N RR+TFEY+ML +ND P A L Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMAAIDEYIQKTN-RRVTFEYIMLSQVNDRPEHAQQL 278 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 +L+ + +NLIP+NP +Y S ++ ++ F + +K++G + IR G DI Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338 Query: 360 AACGQLKSLSKRIPKVPRQ 378 AACGQL+S + KV Q Sbjct: 339 AACGQLRSKQMKKEKVKNQ 357 >gi|29376559|ref|NP_815713.1| ribosomal RNA large subunit methyltransferase N [Enterococcus faecalis V583] gi|227520169|ref|ZP_03950218.1| Fe-S-cluster redox enzyme [Enterococcus faecalis TX0104] gi|227555397|ref|ZP_03985444.1| Fe-S-cluster redox enzyme [Enterococcus faecalis HH22] gi|229549611|ref|ZP_04438336.1| Fe-S-cluster redox enzyme [Enterococcus faecalis ATCC 29200] gi|255972309|ref|ZP_05422895.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|255975469|ref|ZP_05426055.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|256956502|ref|ZP_05560673.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|256961519|ref|ZP_05565690.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|256962655|ref|ZP_05566826.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|257079424|ref|ZP_05573785.1| 23S rRNA methyltransferase [Enterococcus faecalis JH1] gi|257082189|ref|ZP_05576550.1| conserved hypothetical protein [Enterococcus faecalis E1Sol] gi|257090325|ref|ZP_05584686.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|257416428|ref|ZP_05593422.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG] gi|257419673|ref|ZP_05596667.1| conserved hypothetical protein [Enterococcus faecalis T11] gi|293382216|ref|ZP_06628158.1| radical SAM enzyme, Cfr family [Enterococcus faecalis R712] gi|293388635|ref|ZP_06633131.1| radical SAM enzyme, Cfr family [Enterococcus faecalis S613] gi|294780328|ref|ZP_06745697.1| radical SAM enzyme, Cfr family [Enterococcus faecalis PC1.1] gi|300860541|ref|ZP_07106628.1| 23S rRNA m2A2503 methyltransferase [Enterococcus faecalis TUSoD Ef11] gi|307270284|ref|ZP_07551592.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX4248] gi|307277716|ref|ZP_07558802.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0860] gi|307287862|ref|ZP_07567895.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0109] gi|312900861|ref|ZP_07760155.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0470] gi|312902828|ref|ZP_07762032.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0635] gi|312908292|ref|ZP_07767256.1| radical SAM enzyme, Cfr family [Enterococcus faecalis DAPTO 512] gi|312951214|ref|ZP_07770116.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0102] gi|81585123|sp|Q833B6|RLMN_ENTFA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|29344023|gb|AAO81783.1| conserved hypothetical protein TIGR00048 [Enterococcus faecalis V583] gi|227072382|gb|EEI10345.1| Fe-S-cluster redox enzyme [Enterococcus faecalis TX0104] gi|227175440|gb|EEI56412.1| Fe-S-cluster redox enzyme [Enterococcus faecalis HH22] gi|229305276|gb|EEN71272.1| Fe-S-cluster redox enzyme [Enterococcus faecalis ATCC 29200] gi|255963327|gb|EET95803.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|255968341|gb|EET98963.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|256946998|gb|EEU63630.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|256952015|gb|EEU68647.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|256953151|gb|EEU69783.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|256987454|gb|EEU74756.1| 23S rRNA methyltransferase [Enterococcus faecalis JH1] gi|256990219|gb|EEU77521.1| conserved hypothetical protein [Enterococcus faecalis E1Sol] gi|256999137|gb|EEU85657.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|257158256|gb|EEU88216.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG] gi|257161501|gb|EEU91461.1| conserved hypothetical protein [Enterococcus faecalis T11] gi|291080400|gb|EFE17764.1| radical SAM enzyme, Cfr family [Enterococcus faecalis R712] gi|291082010|gb|EFE18973.1| radical SAM enzyme, Cfr family [Enterococcus faecalis S613] gi|294452592|gb|EFG21025.1| radical SAM enzyme, Cfr family [Enterococcus faecalis PC1.1] gi|300849580|gb|EFK77330.1| 23S rRNA m2A2503 methyltransferase [Enterococcus faecalis TUSoD Ef11] gi|306501007|gb|EFM70314.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0109] gi|306505595|gb|EFM74779.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0860] gi|306513338|gb|EFM81962.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX4248] gi|310625706|gb|EFQ08989.1| radical SAM enzyme, Cfr family [Enterococcus faecalis DAPTO 512] gi|310630748|gb|EFQ14031.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0102] gi|310633882|gb|EFQ17165.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0635] gi|311291960|gb|EFQ70516.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0470] gi|315031044|gb|EFT42976.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0017] gi|315034600|gb|EFT46532.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0027] gi|315143477|gb|EFT87493.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX2141] gi|315149242|gb|EFT93258.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0012] gi|315152618|gb|EFT96634.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0031] gi|315159454|gb|EFU03471.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0312] gi|315164747|gb|EFU08764.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX1302] gi|315167578|gb|EFU11595.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX1341] gi|315171638|gb|EFU15655.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX1342] gi|315173222|gb|EFU17239.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX1346] gi|315575041|gb|EFU87232.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0309B] gi|315576758|gb|EFU88949.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0630] gi|315582467|gb|EFU94658.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0309A] gi|327535508|gb|AEA94342.1| cfr family radical SAM enzyme [Enterococcus faecalis OG1RF] gi|329568816|gb|EGG50616.1| 23S rRNA m2A2503 methyltransferase [Enterococcus faecalis TX1467] Length = 357 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 137/379 (36%), Positives = 221/379 (58%), Gaps = 26/379 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++KES+ G+ RE+L + L G + R +Q+W+W+Y + + F MS+IS+ + L Sbjct: 1 MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNISKSLMTL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L ++FS+ + V + + DGT K+L P + + IETV + ++ ++CV++QVG Sbjct: 57 LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+LTA EI+ Q++ + D G ++ ++S++V Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYF-DERGLDE-----------RVSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+ NV L +D GL+ R IT+STSG VP I + + V LAIS Sbjct: 160 VMGIGEPFDNYANVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N++R ++ INR +P+E L+ A Y +N RR+TFEY+ML +ND P A L Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKTN-RRVTFEYIMLSQVNDRPEHAQQL 278 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 +L+ + +NLIP+NP +Y S ++ ++ F + +K++G + IR G DI Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338 Query: 360 AACGQLKSLSKRIPKVPRQ 378 AACGQL+S + KV Q Sbjct: 339 AACGQLRSKQMKKEKVKNQ 357 >gi|148926804|ref|ZP_01810483.1| hypothetical protein Cj8486_1762 [Campylobacter jejuni subsp. jejuni CG8486] gi|145844529|gb|EDK21636.1| hypothetical protein Cj8486_1762 [Campylobacter jejuni subsp. jejuni CG8486] Length = 356 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 140/352 (39%), Positives = 200/352 (56%), Gaps = 34/352 (9%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI++WIY + +F MS++ +++R L Q+F + V + S DG+ K+L Sbjct: 23 FRVKQIYQWIYQKYANNFSDMSNLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFEL 82 Query: 93 PARCIGGPVEIETVYIPEK-------------SRGTLCVSSQVGCSLTCSFCYTGTQKLV 139 + G + IE+V +P K +R T+CVSSQVGC CSFC T L Sbjct: 83 ----VDG-LRIESVLLPMKEEKIDAEGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLK 137 Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199 RNL+A EI+ Q+L + IP R NIV MGMGEPL N NV K Sbjct: 138 RNLSAGEIVGQILWIKKQNN------------IPYERR--VNIVYMGMGEPLDNLKNVSK 183 Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPIN 258 ++ I + + GL+ S RR T+STSG I +G+ +GV+LAISLHAV+++LR L+PIN Sbjct: 184 AVKILAQNEGLAISPRRQTISTSGLAKQIKELGQMNLGVLLAISLHAVNDELRTELMPIN 243 Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318 + Y + ++DA R +P + +R+ FEY+++ GIND A L+K+L GI AK+NLI F Sbjct: 244 KAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGINDKLEHAKELVKLLNGIKAKVNLILF 302 Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 NP G Y ++ + F + + G + IR +GLDI AACGQLK +K Sbjct: 303 NPHEGSLYKRPSLENAIKFQDLLSNKGVTCTIRESKGLDISAACGQLKERAK 354 >gi|257870949|ref|ZP_05650602.1| ribosomal RNA large subunit methyltransferase N [Enterococcus gallinarum EG2] gi|257805113|gb|EEV33935.1| ribosomal RNA large subunit methyltransferase N [Enterococcus gallinarum EG2] Length = 360 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 135/368 (36%), Positives = 222/368 (60%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ G+ +E L + + Q + RT+Q+W+W+Y + + F+ M+++ + + LN Sbjct: 8 KPSIYGLTKESLSLWMTE----QEEKKFRTNQVWEWLYEKRVATFEEMTNLPKSLVTKLN 63 Query: 66 QHFSIIYP--EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + F +I P +IV ++ S DGT K+L + P + IETV + ++ ++CV++QVG Sbjct: 64 ESF-VINPLKQIVLQEAS-DGTVKYLFQLPDNHM-----IETVLMRQEYGMSVCVTTQVG 116 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+LTA EI+ Q++L + + + G ++S++V Sbjct: 117 CNIGCTFCASGLLKKQRDLTAGEIVAQIMLVQHYFDEL------------NAGERVSHVV 164 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N++NV + L I +D GL+ R IT+STSG I E + V LAIS Sbjct: 165 VMGIGEPFDNYENVMQFLQIINDPKGLAIGARHITVSTSGLAHKIKEFAENGLQVNLAIS 224 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N++R ++ INR +P+E L++A +Y +N RRITFEY+ML +ND P A L Sbjct: 225 LHAPNNEVRTSMMRINRSFPIEKLMEAIDYYLEKTN-RRITFEYIMLDHVNDRPEHARQL 283 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 +++LK + +NLIP+NP +Y S ++D++ F + +K++G + IR G DI Sbjct: 284 VELLKNKRKLSYVNLIPYNPVSEHDQYARSKKEDVLAFYDILKKNGINCVIRKEHGTDID 343 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 344 AACGQLRS 351 >gi|293557268|ref|ZP_06675815.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1039] gi|291600555|gb|EFF30860.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1039] Length = 355 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 135/370 (36%), Positives = 222/370 (60%), Gaps = 30/370 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K+S+ G+ EEL ++ G + R +Q+W+W+Y + + +F M+++S+++ Sbjct: 1 MEKQSIYGLTNEELINWFIENG----EKKFRAAQVWEWLYQKRVSNFTEMTNLSKQLIEK 56 Query: 64 LNQHFSIIYP--EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L++HF II P ++V ++ S DGT K+L P + + IETV + ++ ++CV++Q Sbjct: 57 LSEHF-IINPLKQMVVQEAS-DGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQ 109 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC++ C+FC +G K R+LTA EI+ Q+++ + + ++G ++S+ Sbjct: 110 VGCNIGCTFCASGLLKKNRDLTAGEIVAQIMMVQHYFDE------------RNLGERVSH 157 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240 +V+MG+GEP N+DNV L I +D+ GL+ R IT+STSG I + V LA Sbjct: 158 VVVMGIGEPFDNYDNVMDFLHIINDAKGLAIGARHITVSTSGLAHKIKEFANNGLQVNLA 217 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ISLHA +N++R ++ INR +P+E L++A Y +N RRITFEY+ML +ND P A Sbjct: 218 ISLHAPNNEVRTSIMRINRSFPIEKLMEAVDEYLEKTN-RRITFEYIMLNQVNDRPEHAQ 276 Query: 301 NLIKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 L +LK A +NLIP+NP +Y + D++ F + +K++G + IR G D Sbjct: 277 QLADLLKDKKKLAYVNLIPYNPVSEHDQYSRCPKADVLRFYDVLKKNGVNCVIRKEHGTD 336 Query: 358 ILAACGQLKS 367 I AACGQL+S Sbjct: 337 IDAACGQLRS 346 >gi|301167934|emb|CBW27519.1| conserved hypothetical protein [Bacteriovorax marinus SJ] Length = 356 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 141/370 (38%), Positives = 210/370 (56%), Gaps = 23/370 (6%) Query: 5 KKE-SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 KKE SL + EEL E L + G + Q++ WI+ R DF S++S +++ Sbjct: 3 KKEVSLYSLTLEELREYLKEQGF----AKFAADQVYNWIFKRYEFDFDKWSNVSGKIKKH 58 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQV 122 ++ P++V +S DGTRK+L+ + +E V IP K+ R TLCVSSQ+ Sbjct: 59 FEENLDTFLPKVVWNGLSKDGTRKFLI-----GMNDSNTVEAVAIPAKNNRLTLCVSSQI 113 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC++ C+FC+TGT L R+LT E++ Q L L E+++ +++NI Sbjct: 114 GCAIGCTFCHTGTMGLTRHLTTGEVVGQYLAVTKWLR-----ENVDEEA------RLTNI 162 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 V MG GEPL NF+NVK++ + + G+ +R+ITLSTSG VP I ++ + V +AIS Sbjct: 163 VYMGQGEPLHNFNNVKQATKVFMEEKGIGLGQRKITLSTSGLVPQIEKLQDFPPVNVAIS 222 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA N++R L+PIN+ Y L L +A R P L R IT+EY+++ +ND D L Sbjct: 223 LHAAHNNIRTELMPINKAYDLTRLFEAIRKIP-LKAHRWITYEYILIADLNDRVEDLDGL 281 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +L +K+NLIPFN +P ++ + I F + + R GY RT +G DILAAC Sbjct: 282 SDLLDKKVSKVNLIPFNEYPESKFKRPSDEKIKWFQDELNRRGYICTTRTTKGTDILAAC 341 Query: 363 GQLKSLSKRI 372 GQLKS ++ Sbjct: 342 GQLKSEHDKL 351 >gi|283956169|ref|ZP_06373654.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni 1336] gi|283792323|gb|EFC31107.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni 1336] Length = 356 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 141/352 (40%), Positives = 199/352 (56%), Gaps = 34/352 (9%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI++WIY + +F MS + +++R L Q+F + V + S DG+ K+L Sbjct: 23 FRVKQIYQWIYQKYANNFSDMSSLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFEL 82 Query: 93 PARCIGGPVEIETVYIPEK-------------SRGTLCVSSQVGCSLTCSFCYTGTQKLV 139 + G + IE+V +P K +R T+CVSSQVGC CSFC T L Sbjct: 83 ----VDG-LRIESVLLPMKEEKIDAEGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLK 137 Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199 RNL+A EI+ Q+L + IP R NIV MGMGEPL N NV K Sbjct: 138 RNLSAGEIVGQILWIKKQNN------------IPYERR--VNIVYMGMGEPLDNLKNVSK 183 Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPIN 258 ++ I S + GL+ S RR T+STSG I +G+ +GV+LAISLHAV+++LR L+PIN Sbjct: 184 AVKILSQNDGLAISPRRQTISTSGLAKQIKELGQMNLGVLLAISLHAVNDELRTELMPIN 243 Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318 + Y + ++DA R +P + +R+ FEY+++ GIND A L+K+L GI AK+NLI F Sbjct: 244 KAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGINDKLEHAKELVKLLNGIKAKVNLILF 302 Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 NP G Y ++ + F + + G + IR +GLDI AACGQLK +K Sbjct: 303 NPHEGSLYKRPSLENAIKFQDLLSNKGVTCTIRESKGLDISAACGQLKERAK 354 >gi|269837848|ref|YP_003320076.1| radical SAM enzyme, Cfr family [Sphaerobacter thermophilus DSM 20745] gi|269787111|gb|ACZ39254.1| radical SAM enzyme, Cfr family [Sphaerobacter thermophilus DSM 20745] Length = 347 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 142/362 (39%), Positives = 198/362 (54%), Gaps = 26/362 (7%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L + ELEE L G+P R R QI+ W Y + D+ M+ + + +R L Sbjct: 2 ALYDLTLAELEERLAADGVP----RYRARQIFHWAYRQLAVDYDAMTVLPKTLRADLATR 57 Query: 68 FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + V E + DG T K L R + G IETV + R T+CVS QVGC++ Sbjct: 58 LPLTPLTPVREVQTDDGETIKTLFR----TVDGQ-HIETVLMFYPDRTTVCVSCQVGCAV 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 CSFC TG L RNLTA G+ GR ++NIVMMG Sbjct: 113 GCSFCATGMMGLTRNLTA--------------GEMVAQVVAAARRAREAGRTLTNIVMMG 158 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 MGEP N++ + + I + G++F RRIT+STSG VP I R+ E V LA+SLHA Sbjct: 159 MGEPFQNYEATMRMVRILHEEEGMNFGARRITVSTSGLVPFIDRLAREPFQVKLAVSLHA 218 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++DLR+ LVP+NR+YP+ LI ACR Y G RR+TFEYV++ G+NDS +A L ++ Sbjct: 219 PNDDLRSSLVPLNRRYPIGELIAACRRYVG-ETGRRVTFEYVLIDGVNDSDANAEELARL 277 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G+ +NLIP NP P + + I F + ++ G + +R RG+DI AACGQL Sbjct: 278 LRGLLCHVNLIPLNPTPAAPFGRPSVERINRFEQILRARGIPATVRYSRGVDISAACGQL 337 Query: 366 KS 367 ++ Sbjct: 338 RA 339 >gi|257422170|ref|ZP_05599160.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|257163994|gb|EEU93954.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|315157206|gb|EFU01223.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0043] Length = 357 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 137/379 (36%), Positives = 221/379 (58%), Gaps = 26/379 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++KES+ G+ RE+L + L G + R +Q+W+W+Y + + F MS+IS+ + L Sbjct: 1 MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVATFSEMSNISKSLMTL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L ++FS+ + V + + DGT K+L P + + IETV + ++ ++CV++QVG Sbjct: 57 LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+LTA EI+ Q++ + D G ++ ++S++V Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYF-DERGLDE-----------RVSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+ NV L +D GL+ R IT+STSG VP I + + V LAIS Sbjct: 160 VMGIGEPFDNYANVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N++R ++ INR +P+E L+ A Y +N RR+TFEY+ML +ND P A L Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKTN-RRVTFEYIMLSQVNDRPEHAQQL 278 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 +L+ + +NLIP+NP +Y S ++ ++ F + +K++G + IR G DI Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338 Query: 360 AACGQLKSLSKRIPKVPRQ 378 AACGQL+S + KV Q Sbjct: 339 AACGQLRSKQMKKEKVKNQ 357 >gi|323481183|gb|ADX80622.1| radical SAM superfamily protein [Enterococcus faecalis 62] Length = 357 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 137/379 (36%), Positives = 220/379 (58%), Gaps = 26/379 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++KES+ G+ RE+L + L G + R +Q+W+W+Y + + F MS+IS+ + L Sbjct: 1 MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNISKSLMTL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L ++FS+ + V + + DGT K+L P + + IETV + ++ ++CV++QVG Sbjct: 57 LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+LTA EI+ Q++ + D G ++ ++S++V Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYF-DERGLDE-----------RVSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+ NV L +D GL+ R IT+STSG VP I + + V LAIS Sbjct: 160 VMGIGEPFDNYANVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N++R ++ INR +P+E L+ A Y N RR+TFEY+ML +ND P A L Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMAAIDEYIE-KNNRRVTFEYIMLSQVNDRPEHAQQL 278 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 +L+ + +NLIP+NP +Y S ++ ++ F + +K++G + IR G DI Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338 Query: 360 AACGQLKSLSKRIPKVPRQ 378 AACGQL+S + KV Q Sbjct: 339 AACGQLRSKQMKKEKVKNQ 357 >gi|205355727|ref|ZP_03222497.1| hypothetical protein Cj8421_1776 [Campylobacter jejuni subsp. jejuni CG8421] gi|205346504|gb|EDZ33137.1| hypothetical protein Cj8421_1776 [Campylobacter jejuni subsp. jejuni CG8421] Length = 335 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 140/352 (39%), Positives = 200/352 (56%), Gaps = 34/352 (9%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI++WIY + +F MS++ +++R L Q+F + V + S DG+ K+L Sbjct: 2 FRVKQIYQWIYQKYANNFSDMSNLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFEL 61 Query: 93 PARCIGGPVEIETVYIPEK-------------SRGTLCVSSQVGCSLTCSFCYTGTQKLV 139 + G + IE+V +P K +R T+CVSSQVGC CSFC T L Sbjct: 62 ----VDG-LRIESVLLPMKEEKIDAEGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLK 116 Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199 RNL+A EI+ Q+L + IP R NIV MGMGEPL N NV K Sbjct: 117 RNLSAGEIVGQILWIKKQNN------------IPYERR--VNIVYMGMGEPLDNLKNVSK 162 Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPIN 258 ++ I + + GL+ S RR T+STSG I +G+ +GV+LAISLHAV+++LR L+PIN Sbjct: 163 AVKILAQNEGLAISPRRQTISTSGLAKQIKELGQMNLGVLLAISLHAVNDELRTELMPIN 222 Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318 + Y + ++DA R +P + +R+ FEY+++ GIND A L+K+L GI AK+NLI F Sbjct: 223 KAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGINDKLEHAKELVKLLNGIKAKVNLILF 281 Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 NP G Y ++ + F + + G + IR +GLDI AACGQLK +K Sbjct: 282 NPHEGSLYKRPSLENAIKFQDLLSNKGVTCTIRESKGLDISAACGQLKERAK 333 >gi|32266677|ref|NP_860709.1| ribosomal RNA large subunit methyltransferase N [Helicobacter hepaticus ATCC 51449] gi|81665730|sp|Q7VGY9|RLMN_HELHP RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|32262728|gb|AAP77775.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 369 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 133/351 (37%), Positives = 203/351 (57%), Gaps = 40/351 (11%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI--IYPEIVDEKISCDGTRKWLL 90 R QI+ W+Y R D M +IS+ +++ + +HF++ IYP V+ I DG++K+L Sbjct: 28 FRAKQIYHWLYHRYENDAMRMDNISKTMQNYIREHFALSQIYPIRVEHSI--DGSKKYLF 85 Query: 91 R-FPARCIGGPVEIETVYIP-------------EKSRGTLCVSSQVGCSLTCSFCYTGTQ 136 + C E+V I E + T+C+SSQ+GC + C+FC+T Sbjct: 86 ETYDGHCF------ESVLIQMRDKKLGHKGEVVESEKWTMCLSSQIGCKVGCAFCFTAKG 139 Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196 VRNL A EI+ QV++ + + + P K NIV MGMGEPL N +N Sbjct: 140 GFVRNLHASEIVEQVVIMKK-----------DNQMAP---HKRVNIVYMGMGEPLDNIEN 185 Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILV 255 V +++ I S+S GLS S RR T+STSG P I ++G+ +GV LAISLHAV + LR+ L+ Sbjct: 186 VTRAIEILSESEGLSISARRQTISTSGIAPKIKQLGKLNLGVQLAISLHAVDDKLRSQLI 245 Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINL 315 P+N+ Y + ++ R +P + +++ FEY+M+KG+ND + A L+++L GI AK+NL Sbjct: 246 PMNKAYNISDILTEVRAFP-IDTRKKVMFEYLMIKGVNDDLKSAKKLLQLLNGIKAKVNL 304 Query: 316 IPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 I FNP G + + D+ F++ + + G IR RG+DI AACGQL+ Sbjct: 305 ILFNPHEGSTFKRPEINDVRAFADFLIKRGLLCTIRESRGIDISAACGQLR 355 >gi|116871870|ref|YP_848651.1| hypothetical protein lwe0450 [Listeria welshimeri serovar 6b str. SLCC5334] gi|123460725|sp|A0AFT6|RLMN_LISW6 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|116740748|emb|CAK19868.1| conserved hypothetical protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 367 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 141/382 (36%), Positives = 225/382 (58%), Gaps = 32/382 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K S+ G+ +L E L G + R +Q+W W+Y + ++ F+ MS++ +E L Sbjct: 1 MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56 Query: 64 LNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L +F + + ++V E S DGT K+L + + IETV + ++ ++CV++Q Sbjct: 57 LTANFVMNTLEEQVVQE--STDGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQ 109 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC++ C+FC +G K R+LTA EI+ Q++ + L D E+ ++S+ Sbjct: 110 VGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYL-DGRNLEE-----------RVSH 157 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLA 240 +V+MG+GEP N+DNV L + + GL+ R IT+STSG P I E+ V LA Sbjct: 158 VVVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLA 217 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ISLHA +N+LR ++ IN+ Y +E L++A +Y +N RRITFEY+MLKG+ND ++AL Sbjct: 218 ISLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTN-RRITFEYIMLKGVNDHKKEAL 276 Query: 301 NLIKIL--KGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 L +L A +NLIP+NP +Y S ++D++ F + +K++G + IR G D Sbjct: 277 ELAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTD 336 Query: 358 ILAACGQLKSLSKRIPKVPRQE 379 I AACGQL+ SK+I +V +E Sbjct: 337 IDAACGQLR--SKQIKRVGVRE 356 >gi|153951816|ref|YP_001398992.1| radical SAM protein [Campylobacter jejuni subsp. doylei 269.97] gi|205829694|sp|A7H662|RLMN_CAMJD RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|152939262|gb|ABS44003.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. doylei 269.97] Length = 356 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 140/352 (39%), Positives = 201/352 (57%), Gaps = 34/352 (9%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI++WIY + +F MS + +++R L Q+F + V + S DG+ K+L Sbjct: 23 FRVKQIYQWIYQKYANNFSDMSSLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFEL 82 Query: 93 PARCIGGPVEIETVYIPEK-------------SRGTLCVSSQVGCSLTCSFCYTGTQKLV 139 I G + +E+V +P K +R T+CVSSQVGC +CSFC T L Sbjct: 83 ----IDG-LRVESVLLPMKEEKIDTEGKRISHARYTICVSSQVGCKSSCSFCLTAKGGLK 137 Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199 RNL+A EI+ Q+L + + IP R NIV MGMGEPL N NV K Sbjct: 138 RNLSAGEIVGQILWIK------------KQNNIPYERR--VNIVYMGMGEPLDNLKNVSK 183 Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPIN 258 ++ I + + GL+ S RR T+STSG I +G+ +GV+LAISLHAV+++LR L+PIN Sbjct: 184 AVKILAQNDGLAISPRRQTISTSGLAKQIKELGQMNLGVLLAISLHAVNDELRTELMPIN 243 Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318 + Y + ++DA R +P + +R+ FEY+++ GIND A L+K+L GI AK+NLI F Sbjct: 244 KAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGINDKLEHAKELVKLLNGIKAKVNLILF 302 Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 NP G Y ++ + F + + G + IR +GLDI AACGQLK +K Sbjct: 303 NPHEGSLYKRPSLENAIKFQDLLSSKGVTCTIRESKGLDISAACGQLKERAK 354 >gi|290892377|ref|ZP_06555371.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL J2-071] gi|290557943|gb|EFD91463.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL J2-071] Length = 367 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 141/382 (36%), Positives = 225/382 (58%), Gaps = 32/382 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K S+ G+ +L E L G + R +Q+W W+Y + ++ F+ MS++ +E L Sbjct: 1 MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56 Query: 64 LNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L +F + + ++V E S DGT K+L + + IETV + ++ ++CV++Q Sbjct: 57 LTANFVMNTLEEQVVQE--STDGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQ 109 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC++ C+FC +G K R+LTA EI+ Q++ + L D E+ ++S+ Sbjct: 110 VGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYL-DGRNLEE-----------RVSH 157 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLA 240 +V+MG+GEP N+DNV L + + GL+ R IT+STSG P I E+ V LA Sbjct: 158 VVVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLA 217 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ISLHA +N+LR ++ IN+ Y +E L++A +Y +N RRITFEY+MLKG+ND ++AL Sbjct: 218 ISLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTN-RRITFEYIMLKGVNDHKKEAL 276 Query: 301 NLIKIL--KGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 L +L A +NLIP+NP +Y S ++D++ F + +K++G + IR G D Sbjct: 277 ELAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTD 336 Query: 358 ILAACGQLKSLSKRIPKVPRQE 379 I AACGQL+ SK+I +V +E Sbjct: 337 IDAACGQLR--SKQIKRVGVRE 356 >gi|47094708|ref|ZP_00232323.1| conserved hypothetical protein TIGR00048 [Listeria monocytogenes str. 1/2a F6854] gi|224500691|ref|ZP_03669040.1| hypothetical protein LmonF1_13881 [Listeria monocytogenes Finland 1988] gi|254900292|ref|ZP_05260216.1| hypothetical protein LmonJ_10775 [Listeria monocytogenes J0161] gi|254911154|ref|ZP_05261166.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254935482|ref|ZP_05267179.1| 23S rRNA methyltransferase [Listeria monocytogenes F6900] gi|255026212|ref|ZP_05298198.1| hypothetical protein LmonocytFSL_07400 [Listeria monocytogenes FSL J2-003] gi|47016848|gb|EAL07766.1| conserved hypothetical protein TIGR00048 [Listeria monocytogenes str. 1/2a F6854] gi|258608058|gb|EEW20666.1| 23S rRNA methyltransferase [Listeria monocytogenes F6900] gi|293589079|gb|EFF97413.1| conserved hypothetical protein [Listeria monocytogenes J2818] Length = 367 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 141/382 (36%), Positives = 224/382 (58%), Gaps = 32/382 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K S+ G+ L E L G + R +Q+W W+Y + ++ F+ MS++ +E L Sbjct: 1 MEKSSIYGLTWTNLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56 Query: 64 LNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L +F + + ++V E S DGT K+L + + IETV + ++ ++CV++Q Sbjct: 57 LTANFVMNTLEEQVVQE--SADGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQ 109 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC++ C+FC +G K R+LTA EI+ Q++ + L D E+ ++S+ Sbjct: 110 VGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYL-DGRNLEE-----------RVSH 157 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLA 240 +V+MG+GEP N+DNV L + + GL+ R IT+STSG P I E+ V LA Sbjct: 158 VVVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLA 217 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ISLHA +N+LR ++ IN+ Y +E L++A +Y +N RRITFEY+MLKG+ND ++AL Sbjct: 218 ISLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTN-RRITFEYIMLKGVNDHKKEAL 276 Query: 301 NLIKIL--KGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 L +L A +NLIP+NP +Y S ++D++ F + +K++G + IR G D Sbjct: 277 ELAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTD 336 Query: 358 ILAACGQLKSLSKRIPKVPRQE 379 I AACGQL+ SK+I +V +E Sbjct: 337 IDAACGQLR--SKQIKRVGVRE 356 >gi|16799559|ref|NP_469827.1| ribosomal RNA large subunit methyltransferase N [Listeria innocua Clip11262] gi|46906726|ref|YP_013115.1| ribosomal RNA large subunit methyltransferase N [Listeria monocytogenes serotype 4b str. F2365] gi|47092541|ref|ZP_00230330.1| conserved hypothetical protein TIGR00048 [Listeria monocytogenes str. 4b H7858] gi|217965434|ref|YP_002351112.1| radical SAM enzyme, Cfr family [Listeria monocytogenes HCC23] gi|226223105|ref|YP_002757212.1| conserved hypothetical protein, highly similar to B. subtilis YloN protein [Listeria monocytogenes Clip81459] gi|254824244|ref|ZP_05229245.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL J1-194] gi|254829423|ref|ZP_05234110.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL N3-165] gi|254830533|ref|ZP_05235188.1| hypothetical protein Lmon1_04192 [Listeria monocytogenes 10403S] gi|254853849|ref|ZP_05243197.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL R2-503] gi|254933233|ref|ZP_05266592.1| 23S rRNA methyltransferase [Listeria monocytogenes HPB2262] gi|254993511|ref|ZP_05275701.1| hypothetical protein LmonocytoFSL_11352 [Listeria monocytogenes FSL J2-064] gi|255521363|ref|ZP_05388600.1| hypothetical protein LmonocFSL_09075 [Listeria monocytogenes FSL J1-175] gi|284800757|ref|YP_003412622.1| hypothetical protein LM5578_0505 [Listeria monocytogenes 08-5578] gi|284993943|ref|YP_003415711.1| hypothetical protein LM5923_0504 [Listeria monocytogenes 08-5923] gi|81403675|sp|Q723G9|RLMN_LISMF RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|81595444|sp|Q92EH6|RLMN_LISIN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807187|sp|B8DCJ5|RLMN_LISMH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|259491990|sp|C1KZZ3|RLMN_LISMC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|16412924|emb|CAC95716.1| lin0484 [Listeria innocua Clip11262] gi|46879991|gb|AAT03292.1| conserved hypothetical protein TIGR00048 [Listeria monocytogenes serotype 4b str. F2365] gi|47019133|gb|EAL09877.1| conserved hypothetical protein TIGR00048 [Listeria monocytogenes str. 4b H7858] gi|217334704|gb|ACK40498.1| radical SAM enzyme, Cfr family [Listeria monocytogenes HCC23] gi|225875567|emb|CAS04270.1| Putative conserved hypothetical protein, highly similar to B. subtilis YloN protein [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258601839|gb|EEW15164.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL N3-165] gi|258607233|gb|EEW19841.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL R2-503] gi|284056319|gb|ADB67260.1| hypothetical protein LM5578_0505 [Listeria monocytogenes 08-5578] gi|284059410|gb|ADB70349.1| hypothetical protein LM5923_0504 [Listeria monocytogenes 08-5923] gi|293584792|gb|EFF96824.1| 23S rRNA methyltransferase [Listeria monocytogenes HPB2262] gi|293593478|gb|EFG01239.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL J1-194] gi|307570010|emb|CAR83189.1| conserved hypothetical protein [Listeria monocytogenes L99] gi|328467548|gb|EGF38610.1| ribosomal RNA large subunit methyltransferase N [Listeria monocytogenes 1816] gi|332310902|gb|EGJ23997.1| Ribosomal RNA large subunit methyltransferase N [Listeria monocytogenes str. Scott A] Length = 367 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 141/382 (36%), Positives = 225/382 (58%), Gaps = 32/382 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K S+ G+ +L E L G + R +Q+W W+Y + ++ F+ MS++ +E L Sbjct: 1 MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56 Query: 64 LNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L +F + + ++V E S DGT K+L + + IETV + ++ ++CV++Q Sbjct: 57 LTANFVMNTLEEQVVQE--STDGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQ 109 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC++ C+FC +G K R+LTA EI+ Q++ + L D E+ ++S+ Sbjct: 110 VGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYL-DGRNLEE-----------RVSH 157 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLA 240 +V+MG+GEP N+DNV L + + GL+ R IT+STSG P I E+ V LA Sbjct: 158 VVVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLA 217 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ISLHA +N+LR ++ IN+ Y +E L++A +Y +N RRITFEY+MLKG+ND ++AL Sbjct: 218 ISLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTN-RRITFEYIMLKGVNDHKKEAL 276 Query: 301 NLIKIL--KGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 L +L A +NLIP+NP +Y S ++D++ F + +K++G + IR G D Sbjct: 277 ELAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTD 336 Query: 358 ILAACGQLKSLSKRIPKVPRQE 379 I AACGQL+ SK+I +V +E Sbjct: 337 IDAACGQLR--SKQIKRVGVRE 356 >gi|305432592|ref|ZP_07401753.1| cfr family radical SAM enzyme [Campylobacter coli JV20] gi|304444303|gb|EFM36955.1| cfr family radical SAM enzyme [Campylobacter coli JV20] Length = 356 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 147/379 (38%), Positives = 210/379 (55%), Gaps = 42/379 (11%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +++ + EELEE + + R QI++WIY + +F MS + +++R L Q Sbjct: 6 NILDFLPEELEEKIKPM--------FRVKQIYQWIYQKYANNFSDMSSLPKDLRLELAQT 57 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-------------SRG 114 + + V + S DG+ K+L I G + IE+V +P K +R Sbjct: 58 YHFSPLKCVKNEQSKDGSIKYLFEL----IDG-LRIESVLLPMKEEQFDEEGKRISHTRY 112 Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 T+CVSSQVGC CSFC T L RNL+A EI+ Q+L + IP Sbjct: 113 TICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNN------------IPY 160 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE- 233 R NIV MGMGEPL N NV K++ I S + GL+ S RR T+STSG I +GE Sbjct: 161 ERR--VNIVYMGMGEPLDNLKNVSKAVKILSQNDGLAISPRRQTISTSGLAKQIKELGEM 218 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 +GV+LAISLHAV+++LR L+PIN+ Y + ++DA R +P + +R+ FEY+++ GIN Sbjct: 219 NLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVRAFP-IDQRKRVMFEYLLIDGIN 277 Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353 D A L+K+L GI AK+NLI FNP G Y ++ + F + + G + IR Sbjct: 278 DKLEHAKELVKLLNGIKAKVNLILFNPHEGSIYHRPKLENAIKFQDLLSAKGVTCTIRES 337 Query: 354 RGLDILAACGQLKSLSKRI 372 +GLDI AACGQLK +K + Sbjct: 338 KGLDISAACGQLKERAKEL 356 >gi|256619523|ref|ZP_05476369.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|307275985|ref|ZP_07557118.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX2134] gi|256599050|gb|EEU18226.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|306507315|gb|EFM76452.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX2134] gi|315146175|gb|EFT90191.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX4244] Length = 357 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 137/379 (36%), Positives = 221/379 (58%), Gaps = 26/379 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++KES+ G+ RE+L + L G + R +Q+W+W+Y + + F MS+IS+ + L Sbjct: 1 MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNISKSLMTL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L ++FS+ + V + + DGT K+L P + + IETV + ++ ++CV++QVG Sbjct: 57 LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+LTA EI+ Q++ + D G ++ ++S++V Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYF-DERGLDE-----------RVSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+ NV L +D GL+ R IT+STSG VP I + + V LAIS Sbjct: 160 VMGIGEPFDNYVNVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N++R ++ INR +P+E L+ A Y +N RR+TFEY+ML +ND P A L Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKTN-RRVTFEYIMLSQVNDRPEHAQQL 278 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 +L+ + +NLIP+NP +Y S ++ ++ F + +K++G + IR G DI Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338 Query: 360 AACGQLKSLSKRIPKVPRQ 378 AACGQL+S + KV Q Sbjct: 339 AACGQLRSKQMKKEKVKNQ 357 >gi|313899948|ref|ZP_07833450.1| 23S rRNA m2A2503 methyltransferase [Clostridium sp. HGF2] gi|312955256|gb|EFR36922.1| 23S rRNA m2A2503 methyltransferase [Clostridium sp. HGF2] Length = 351 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 128/344 (37%), Positives = 194/344 (56%), Gaps = 21/344 (6%) Query: 24 IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCD 83 + + Q + R QI++W+Y + MSD+S++ R L Q FS+ ++ D++++ D Sbjct: 15 MALEQGWKKFRAHQIFQWLYRKRAVSIDDMSDLSKDTRETLKQQFSLTPLKLRDKQVASD 74 Query: 84 GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLT 143 GT K+L + IE+V + ++CV+SQVGC++ C+FC +G K RNLT Sbjct: 75 GTTKYLFALEDGSL-----IESVLMQFDYGKSICVTSQVGCNMACAFCASGLTKKKRNLT 129 Query: 144 AEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI 203 + E++ QVL + D ED ++S+IV+MG GEP N+++V LS Sbjct: 130 SGEMVAQVLYVQR---DLDKQED-----------RLSHIVVMGTGEPFDNYEHVMNFLST 175 Query: 204 ASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYP 262 + GL R IT+ST G VP I +E LAISLHA +N+LR+ L+P+NR YP Sbjct: 176 VNHDRGLGIGARHITISTCGVVPKIYEFAKEHTQYNLAISLHAPNNELRDRLMPVNRAYP 235 Query: 263 LEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP 322 LE L++A ++Y N RR+TFEY++L+G+ND L K+LKG+ A +NLIP+N Sbjct: 236 LEELMEAIQYY-ARENNRRLTFEYILLRGVNDQKEHVAQLAKLLKGLNAYVNLIPYNAVD 294 Query: 323 GCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + D + F + + + G IR G DI AACGQL+ Sbjct: 295 ENGFQGVDHAHAMVFYDALMKQGVRCTIRKEHGADIDAACGQLR 338 >gi|16802525|ref|NP_464010.1| ribosomal RNA large subunit methyltransferase N [Listeria monocytogenes EGD-e] gi|224502216|ref|ZP_03670523.1| hypothetical protein LmonFR_06797 [Listeria monocytogenes FSL R2-561] gi|81592923|sp|Q8Y9P2|RLMN_LISMO RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|16409858|emb|CAC98561.1| lmo0482 [Listeria monocytogenes EGD-e] Length = 367 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 141/382 (36%), Positives = 224/382 (58%), Gaps = 32/382 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K S+ G+ L E L G + R +Q+W W+Y + ++ F+ MS++ +E L Sbjct: 1 MEKSSIYGLTWTNLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56 Query: 64 LNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L +F + + ++V E S DGT K+L + + IETV + ++ ++CV++Q Sbjct: 57 LTANFVMNTLEEQVVQE--STDGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQ 109 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC++ C+FC +G K R+LTA EI+ Q++ + L D E+ ++S+ Sbjct: 110 VGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYL-DGRNLEE-----------RVSH 157 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLA 240 +V+MG+GEP N+DNV L + + GL+ R IT+STSG P I E+ V LA Sbjct: 158 VVVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLA 217 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ISLHA +N+LR ++ IN+ Y +E L++A +Y +N RRITFEY+MLKG+ND ++AL Sbjct: 218 ISLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTN-RRITFEYIMLKGVNDHKKEAL 276 Query: 301 NLIKIL--KGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 L +L A +NLIP+NP +Y S ++D++ F + +K++G + IR G D Sbjct: 277 ELAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTD 336 Query: 358 ILAACGQLKSLSKRIPKVPRQE 379 I AACGQL+ SK+I +V +E Sbjct: 337 IDAACGQLR--SKQIKRVGVRE 356 >gi|289551002|ref|YP_003471906.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus lugdunensis HKU09-01] gi|289180534|gb|ADC87779.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus lugdunensis HKU09-01] Length = 364 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 130/371 (35%), Positives = 209/371 (56%), Gaps = 25/371 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 K+S+ + +E+++ L++ G + R QI++W+Y + + F+ M+++S+++R L Sbjct: 16 FDKQSIYSLRFDEMQQWLVEQG----QQKFRAKQIYEWLYQKRVNSFEEMTNLSKDLRKL 71 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L HF + V ++ S DGT K+L + IETV + ++CV++QVG Sbjct: 72 LADHFVMTTLTTVVKQESKDGTIKFLFE-----LQDGYTIETVLMRHDYGNSVCVTTQVG 126 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C+FC + L RNL A EI+ QVL + L + ++S IV Sbjct: 127 CRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKAL--------------DATEERVSQIV 172 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+D + L I +D L+ R IT+STSG VP I +E I + A+S Sbjct: 173 IMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIVPRIYDFADEGIQINFAVS 232 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +D+R+ L+PINR Y ++ L++A R+Y +N RRITFEY + G+ND A L Sbjct: 233 LHAAKDDVRSKLMPINRAYNVDKLMEAIRYYQQKTN-RRITFEYGLFGGVNDQLEHAREL 291 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++K + +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AAC Sbjct: 292 AHLIKNLNCHVNLIPVNHVPERNYVKTSKDDIFKFEKELKRLGVNATIRREQGSDIDAAC 351 Query: 363 GQLKSLSKRIP 373 GQL++ +++ Sbjct: 352 GQLRAKERQVE 362 >gi|154147902|ref|YP_001407255.1| radical SAM protein [Campylobacter hominis ATCC BAA-381] gi|205829692|sp|A7I414|RLMN_CAMHC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|153803911|gb|ABS50918.1| radical SAM enzyme, Cfr family [Campylobacter hominis ATCC BAA-381] Length = 358 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 136/349 (38%), Positives = 203/349 (58%), Gaps = 34/349 (9%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 + R QI++WIY + + DF M ++ ++R L F I + + S DG++K+L Sbjct: 19 KFRAKQIYEWIYHKNVDDFLQMKNLPLQMREDLANEFYIGGLNVSKCEQSVDGSKKYLFE 78 Query: 92 FPARCIGGPVEIETVYIPEKS-------------RGTLCVSSQVGCSLTCSFCYTGTQKL 138 G IE+V +P K R T+CVSSQVGC + C+FC T Sbjct: 79 LK----DGKT-IESVLLPMKDEITDENGEILRHKRYTICVSSQVGCKIGCAFCLTAKGGF 133 Query: 139 VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVK 198 VRNL+A EI+ Q+ L + + IP R+I N+V MGMGEPL N +NV Sbjct: 134 VRNLSAGEIVEQIRLIKKI------------NKIP-YERRI-NVVYMGMGEPLNNLENVA 179 Query: 199 KSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPI 257 K++ I + GL+ S RR T+STSG I ++GE +GV+LAISLHAV+++LR L+PI Sbjct: 180 KAIKILIQNEGLAISPRRQTISTSGLSSQIKKLGEMNLGVLLAISLHAVNDELREKLMPI 239 Query: 258 NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIP 317 NR Y + ++ A R +P + +R+ FEY+++ G+NDS DA L+++L GI AK+NLI Sbjct: 240 NRAYNIASIMQAVREFP-IDLRKRVMFEYLVMDGVNDSINDAKTLVRLLNGIKAKVNLIY 298 Query: 318 FNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 FNP G ++ +++++ F + + G + IR +GLDI AACGQL+ Sbjct: 299 FNPHIGSKFHRPSEENMIKFQDYLSVHGITCTIRQSKGLDISAACGQLR 347 >gi|269120621|ref|YP_003308798.1| radical SAM enzyme, Cfr family [Sebaldella termitidis ATCC 33386] gi|268614499|gb|ACZ08867.1| radical SAM enzyme, Cfr family [Sebaldella termitidis ATCC 33386] Length = 357 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 138/367 (37%), Positives = 209/367 (56%), Gaps = 30/367 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K ++ G+ + LE+ LLK+ + +V+ QI+ W++ + +F S+IS+E R++ Sbjct: 11 IEKLNISGLKYDTLEKELLKLNFKKYNVK----QIFNWLHNKMEDNFDNFSNISKENRNI 66 Query: 64 LNQHFSIIYPEI--VDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 L+++F I PEI +D IS D T K+L + + G V IE+V I K+R TLCVSS Sbjct: 67 LSKNFFI--PEITLLDHLISENDNTEKFLFK-----LQGNVLIESVLIGHKNRYTLCVSS 119 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC+L C FC T T K +NL EIL+Q + L G K+ Sbjct: 120 QAGCALGCEFCATATMKFEKNLDISEILMQFYYVQKYLN--------------QKGNKLD 165 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVML 239 N+V MGMGEP NFDNV S+ I + G + SKR T+STSG VP I + + + V L Sbjct: 166 NVVFMGMGEPFLNFDNVMDSIDILNSIDGQNCSKRNFTVSTSGLVPYIEKFTDLDSQVNL 225 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH+V+++ R+ ++P+N+KYPL+ L + Y + +RI+FEY+++ N S DA Sbjct: 226 AVSLHSVNDEYRSKIMPVNKKYPLKDLKKSLLAYQKKT-KKRISFEYILIDDFNCSKNDA 284 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L K L+ +NLIP+NP G Y + F + ++ ++ +R +G DI Sbjct: 285 FELTKFLREFSCLVNLIPYNPVAGKSYATPSKTRQQEFYRILLKNNINATLRETKGQDIA 344 Query: 360 AACGQLK 366 AACGQLK Sbjct: 345 AACGQLK 351 >gi|315161444|gb|EFU05461.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0645] Length = 357 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 137/379 (36%), Positives = 220/379 (58%), Gaps = 26/379 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++KES+ G+ RE+L + L G + R +Q+W+W+Y + + F MS+IS+ + L Sbjct: 1 MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNISKSLMTL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L ++FS+ + V + + DGT K+L P + + IETV + ++ ++CV++QVG Sbjct: 57 LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+LTA EI+ Q++ + D G ++ ++S++V Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYF-DERGLDE-----------RVSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+ NV L +D GL+ R IT+STSG VP I + + V LAIS Sbjct: 160 VMGIGEPFDNYANVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N++R ++ INR +P+E L+ A Y N RR+TFEY+ML +ND P A L Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMVAIDEYIE-KNNRRVTFEYIMLSQVNDRPEHAQQL 278 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 +L+ + +NLIP+NP +Y S ++ ++ F + +K++G + IR G DI Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338 Query: 360 AACGQLKSLSKRIPKVPRQ 378 AACGQL+S + KV Q Sbjct: 339 AACGQLRSKQMKKEKVKNQ 357 >gi|86150562|ref|ZP_01068786.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni CF93-6] gi|86154131|ref|ZP_01072330.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni HB93-13] gi|88597741|ref|ZP_01100974.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni 84-25] gi|85839014|gb|EAQ56279.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni CF93-6] gi|85842371|gb|EAQ59587.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni HB93-13] gi|88190045|gb|EAQ94021.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni 84-25] gi|284926904|gb|ADC29256.1| putative radical SAM domain protein [Campylobacter jejuni subsp. jejuni IA3902] gi|315929674|gb|EFV08851.1| radical SAM superfamily protein [Campylobacter jejuni subsp. jejuni 305] Length = 356 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 140/352 (39%), Positives = 199/352 (56%), Gaps = 34/352 (9%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI++WIY + +F MS + +++R L Q+F + V + S DG+ K+L Sbjct: 23 FRVKQIYQWIYQKYANNFSDMSSLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFEL 82 Query: 93 PARCIGGPVEIETVYIPEK-------------SRGTLCVSSQVGCSLTCSFCYTGTQKLV 139 I G + +E+V +P K +R T+CVSSQVGC CSFC T L Sbjct: 83 ----IDG-LRVESVLLPMKEEKIDAEGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLK 137 Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199 RNL+A EI+ Q+L + IP R NIV MGMGEPL N NV K Sbjct: 138 RNLSAGEIVGQILWIKKQNN------------IPYERR--VNIVYMGMGEPLDNLKNVSK 183 Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPIN 258 ++ I + + GL+ S RR T+STSG I +G+ +GV+LAISLHAV+++LR L+PIN Sbjct: 184 AVKILAQNEGLAISPRRQTISTSGLAKQIKELGQMNLGVLLAISLHAVNDELRTELMPIN 243 Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318 + Y + ++DA R +P + +R+ FEY+++ GIND A L+K+L GI AK+NLI F Sbjct: 244 KAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGINDKLEHAKELVKLLNGIKAKVNLILF 302 Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 NP G Y ++ + F + + G + IR +GLDI AACGQLK +K Sbjct: 303 NPHEGSLYKRPSLENAIKFQDLLSNKGVTCTIRESKGLDISAACGQLKERAK 354 >gi|256853566|ref|ZP_05558931.1| ribosomal RNA large subunit methyltransferase N [Enterococcus faecalis T8] gi|256710509|gb|EEU25552.1| ribosomal RNA large subunit methyltransferase N [Enterococcus faecalis T8] Length = 357 Score = 234 bits (596), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 136/379 (35%), Positives = 222/379 (58%), Gaps = 26/379 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++KES+ G+ RE+L + L G + R +Q+W+W+Y + + F MS+IS+ + L Sbjct: 1 MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNISKSLMTL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L ++FS+ + V + + DGT K+L P + + IETV + ++ ++CV++QVG Sbjct: 57 LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+LTA EI+ +++ + D G ++ ++S++V Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAKIMWVQHYF-DERGLDE-----------RVSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+ NV L +D GL+ R IT+STSG VP I + + V LAIS Sbjct: 160 VMGIGEPFDNYVNVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N++R +++ INR +P+E L+ A Y +N RR+TFEY+ML +ND P A L Sbjct: 220 LHAPNNEVRTLIMRINRSFPIEKLMAAIDEYIEKTN-RRVTFEYIMLSQVNDRPEHAQQL 278 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 +L+ + +NLIP+NP +Y S ++ ++ F + +K++G + IR G DI Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338 Query: 360 AACGQLKSLSKRIPKVPRQ 378 AACGQL+S + KV Q Sbjct: 339 AACGQLRSKQMKKEKVKNQ 357 >gi|57236899|ref|YP_179852.1| radical SAM protein [Campylobacter jejuni RM1221] gi|81557377|sp|Q5HS83|RLMN_CAMJR RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|57165703|gb|AAW34482.1| radical SAM enzyme, Cfr family [Campylobacter jejuni RM1221] gi|315059159|gb|ADT73488.1| Ribosomal RNA large subunit methyltransferase N [Campylobacter jejuni subsp. jejuni S3] Length = 356 Score = 234 bits (596), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 140/352 (39%), Positives = 201/352 (57%), Gaps = 34/352 (9%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI++WIY + +F MS + +++R L Q+F + V + S DG+ K+L Sbjct: 23 FRVKQIYQWIYQKYANNFSDMSSLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFEL 82 Query: 93 PARCIGGPVEIETVYIPEK-------------SRGTLCVSSQVGCSLTCSFCYTGTQKLV 139 + G + IE+V +P K +R T+CVSSQVGC CSFC T L Sbjct: 83 ----VDG-LRIESVLLPMKEEKIDAEGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLK 137 Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199 RNL+A EI+ Q+L + + P R+I NIV MGMGEPL N NV K Sbjct: 138 RNLSAGEIVGQILWIKKQ-NNIP------------YERRI-NIVYMGMGEPLDNLKNVSK 183 Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPIN 258 ++ I + + GL+ S RR T+STSG I +G+ +GV+LAISLHAV+++LR L+PIN Sbjct: 184 AVKILAQNEGLAISPRRQTISTSGLAKQIKELGQMNLGVLLAISLHAVNDELRTELMPIN 243 Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318 + Y + ++DA R +P + +R+ FEY+++ GIND A L+K+L GI AK+NLI F Sbjct: 244 KAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGINDKLEHAKELVKLLNGIKAKVNLILF 302 Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 NP G Y ++ + F + + G + IR +GLDI AACGQLK +K Sbjct: 303 NPHEGGLYKRPSLENAIKFQDLLSNKGVTCTIRESKGLDISAACGQLKERAK 354 >gi|86152381|ref|ZP_01070591.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni 260.94] gi|315125097|ref|YP_004067101.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85840678|gb|EAQ57930.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni 260.94] gi|315018819|gb|ADT66912.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 356 Score = 233 bits (595), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 140/352 (39%), Positives = 201/352 (57%), Gaps = 34/352 (9%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI++WIY + +F MS + +++R L Q+F + V + S DG+ K+L Sbjct: 23 FRVKQIYQWIYQKYANNFSDMSSLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFEL 82 Query: 93 PARCIGGPVEIETVYIPEK-------------SRGTLCVSSQVGCSLTCSFCYTGTQKLV 139 I G + +E+V +P K +R T+CVSSQVGC CSFC T L Sbjct: 83 ----IDG-LRVESVLLPMKEEKIDAEGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLK 137 Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199 RNL+A EI+ Q+L + + P R+I NIV MGMGEPL N NV K Sbjct: 138 RNLSAGEIVGQILWIKKQ-NNIP------------YERRI-NIVYMGMGEPLDNLKNVSK 183 Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPIN 258 ++ I + + GL+ S RR T+STSG I +G+ +GV+LAISLHAV+++LR L+PIN Sbjct: 184 AVKILAQNDGLAISPRRQTISTSGLAKQIKELGQMNLGVLLAISLHAVNDELRTELMPIN 243 Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318 + Y + ++DA R +P + +R+ FEY+++ GIND A L+K+L GI AK+NLI F Sbjct: 244 KAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGINDKLEHAKELVKLLNGIKAKVNLILF 302 Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 NP G Y ++ + F + + G + IR +GLDI AACGQLK +K Sbjct: 303 NPHEGSLYKRPSLENAIKFQDLLSSKGVTCTIRESKGLDISAACGQLKERAK 354 >gi|160915438|ref|ZP_02077649.1| hypothetical protein EUBDOL_01446 [Eubacterium dolichum DSM 3991] gi|158432558|gb|EDP10847.1| hypothetical protein EUBDOL_01446 [Eubacterium dolichum DSM 3991] Length = 347 Score = 233 bits (595), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 134/361 (37%), Positives = 202/361 (55%), Gaps = 25/361 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +SL +E+ E L G + R QI++W+Y + + MSD+S E R +L++ Sbjct: 2 KSLYDFNYDEMGEMALAHGWK----KFRGHQIFQWLYRKRVASIDEMSDLSLETRRVLSE 57 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 ++ + E+ D+++S DGT K+L + IE+V + ++CV+SQVGC++ Sbjct: 58 NYELTDLELRDKQVSSDGTTKYLFALKDGSL-----IESVLMQFDYGKSICVTSQVGCNM 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC +G K R+LT+ E++ QVL + L + ++S+IV+MG Sbjct: 113 ACAFCASGLTKKKRDLTSGEMVSQVLYVQRDL--------------DAQKERLSHIVVMG 158 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 GEP N+D+V L + GL R IT+ST G VP I +E LAISLHA Sbjct: 159 TGEPFDNYDHVMNFLRTVNHDRGLGIGARHITISTCGVVPRIYDFSKEHTQYNLAISLHA 218 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 SN+LRN L+PIN+ YPLE L+ A R+Y N RR+TFEY++LKG+ND + L K+ Sbjct: 219 PSNELRNQLMPINKAYPLEELMQAIRYYTS-ENNRRLTFEYILLKGVNDGMKQVNELAKL 277 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG+ A +NLIP+N +L ++ + F + + + G IR G DI AACGQL Sbjct: 278 LKGLNAYVNLIPYNAVDENGFLGVKYEEAMVFYDALMKRGIRCTIRKEHGADIDAACGQL 337 Query: 366 K 366 + Sbjct: 338 R 338 >gi|300765131|ref|ZP_07075117.1| cfr family radical SAM enzyme [Listeria monocytogenes FSL N1-017] gi|300514102|gb|EFK41163.1| cfr family radical SAM enzyme [Listeria monocytogenes FSL N1-017] Length = 367 Score = 233 bits (595), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 141/382 (36%), Positives = 225/382 (58%), Gaps = 32/382 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K S+ G+ +L E L G + R +Q+W W+Y + ++ F+ MS++ +E L Sbjct: 1 MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56 Query: 64 LNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L +F + + ++V E S DGT K+L + + IETV + ++ ++CV++Q Sbjct: 57 LTANFVMNTLEEQVVQE--STDGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQ 109 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC++ C+FC +G K R+LTA EI+ Q++ + L D E+ ++S+ Sbjct: 110 VGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYL-DGRNLEE-----------RVSH 157 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLA 240 +V+MG+GEP N+DNV L + + GL+ R IT+STSG P I E+ V LA Sbjct: 158 VVVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLA 217 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ISLHA +N+LR ++ IN+ Y +E L++A +Y +N RRITFEY+MLKG+ND ++AL Sbjct: 218 ISLHAPNNELRMSIMRINKTYSIEKLMEAIHYYVNKTN-RRITFEYIMLKGVNDHKKEAL 276 Query: 301 NLIKIL--KGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 L +L A +NLIP+NP +Y S ++D++ F + +K++G + IR G D Sbjct: 277 ELAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTD 336 Query: 358 ILAACGQLKSLSKRIPKVPRQE 379 I AACGQL+ SK+I +V +E Sbjct: 337 IDAACGQLR--SKQIKRVGVRE 356 >gi|170757229|ref|YP_001782049.1| radical SAM protein [Clostridium botulinum B1 str. Okra] gi|205829641|sp|B1IIL7|RLMN_CLOBK RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|169122441|gb|ACA46277.1| radical SAM enzyme, Cfr family [Clostridium botulinum B1 str. Okra] Length = 342 Score = 233 bits (595), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 137/362 (37%), Positives = 205/362 (56%), Gaps = 29/362 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 E+++ EEL+E L I + R Q++ WIY + I DF M +I + ++LL+ Sbjct: 2 ENILDFTLEELKEWL----ISKEEKAFRAKQVFDWIYNKLIFDFNNMKNIPYKTKNLLSD 57 Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +F I P++V + +S D T K+L + I IE+V + K ++CVS+QVGC Sbjct: 58 NFYIGVPKVVKKLMSQDKNTYKFLFEYKDGNI-----IESVVMKYKHGNSICVSTQVGCR 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC + ++RNLT+ EIL Q++ A+ +G +ISN+V+M Sbjct: 113 MGCKFCASTLDGVIRNLTSGEILSQIMAAQ-----------------KEIGERISNVVLM 155 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G GEPL NF+NV K L + + L+ +R ITLST G VP I + ++ + LAISLH Sbjct: 156 GSGEPLDNFENVTKFLDLVTSDTTLNIGQRHITLSTCGIVPKIKELADKNYNITLAISLH 215 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 + + LR ++PI KY ++ L++AC +Y +N RRITFEY ++KG NDS ++A L Sbjct: 216 SPEDLLRKEMMPIANKYSIKELMEACDYYINKTN-RRITFEYALVKGKNDSIKEAKKLST 274 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKG +NLIP N Y S K+I +F +K +G + IR G DI AACGQ Sbjct: 275 VLKGKLCHVNLIPVNEIKENSYEKSTLKNIESFGNILKENGIETTIRREMGADINAACGQ 334 Query: 365 LK 366 L+ Sbjct: 335 LR 336 >gi|295135350|ref|YP_003586026.1| radical SAM superfamily protein, UPF0063 [Zunongwangia profunda SM-A87] gi|294983365|gb|ADF53830.1| radical SAM superfamily protein, UPF0063 [Zunongwangia profunda SM-A87] Length = 348 Score = 233 bits (594), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 128/367 (34%), Positives = 214/367 (58%), Gaps = 26/367 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK+ + + +++L+E ++ G R SQ+++W++ +G DF M++IS++ R +L Sbjct: 4 KKKDIRALTKKQLQEFFVEHGDKS----FRGSQVYEWLWSKGAHDFDEMTNISKQTRAML 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 ++F I + + + S DGT K ++ + + +E+V IP +R T CVSSQVGC Sbjct: 60 AENFVINHIRVDQMQRSSDGTIKNAVK-----LHDNLTVESVLIPTPTRTTACVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 SL C FC T K +RNL +EI QV+ I+ R +SNIV Sbjct: 115 SLDCQFCATARLKRMRNLNPDEIYDQVVA-------------IDNESRLYFDRPLSNIVF 161 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAIS 242 MGMGEPL N++NV K++ + GL S +RIT+STSG VP + + +E + LA+S Sbjct: 162 MGMGEPLMNYNNVMKAVEKITSDEGLGMSAKRITISTSG-VPKMIKKLADDEAKIKLAVS 220 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA ++++R ++P N +PLE L +A ++ + +R IT+EY++ K +ND+ +DA+ L Sbjct: 221 LHAATDEVRTRIMPFNETFPLEDLREALEYWYSKTKSR-ITYEYIVWKDVNDTRKDAMAL 279 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++ K +P K+NLI +NP ++ + + + + ++++G + +R RG DI AAC Sbjct: 280 VRFCKFVPCKVNLIEYNPIDDGDFQQASSQATAMYQQLLEQNGITVTVRRSRGKDIDAAC 339 Query: 363 GQLKSLS 369 GQL + S Sbjct: 340 GQLANKS 346 >gi|57504577|ref|ZP_00370689.1| radical SAM enzyme, Cfr family [Campylobacter coli RM2228] gi|57019472|gb|EAL56166.1| radical SAM enzyme, Cfr family [Campylobacter coli RM2228] Length = 356 Score = 233 bits (594), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 146/379 (38%), Positives = 211/379 (55%), Gaps = 42/379 (11%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +++ + EELEE + + R QI++WIY + +F MS + +++R L Q Sbjct: 6 NILDFLPEELEEKIKPM--------FRVKQIYQWIYQKYANNFSDMSSLPKDLRLELAQT 57 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-------------SRG 114 + + V + S DG+ K+L I G + IE+V +P K +R Sbjct: 58 YHFSPLKCVKNEQSKDGSIKYLFEL----IDG-LRIESVLLPMKEEQFDEEGKRISHTRY 112 Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 ++CVSSQVGC CSFC T L RNL+A EI+ Q+L + + IP Sbjct: 113 SICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIK------------KQNNIPY 160 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE- 233 R NIV MGMGEPL N NV K++ I S + GL+ S RR T+STSG I +GE Sbjct: 161 ERR--VNIVYMGMGEPLDNLKNVSKAVKILSQNDGLAISPRRQTISTSGLAKQIKELGEM 218 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 +GV+LAISLHAV+++LR L+PIN+ Y + ++DA R +P + +R+ FEY+++ GIN Sbjct: 219 NLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVRAFP-IDQRKRVMFEYLLIDGIN 277 Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353 D A L+K+L GI AK+NLI FNP G Y ++ + F + + G + IR Sbjct: 278 DKLEHAKELVKLLNGIKAKVNLILFNPHEGSIYHRPKLENAIKFQDLLSAKGVTCTIRES 337 Query: 354 RGLDILAACGQLKSLSKRI 372 +GLDI AACGQLK +K + Sbjct: 338 KGLDISAACGQLKERAKEL 356 >gi|187778899|ref|ZP_02995372.1| hypothetical protein CLOSPO_02494 [Clostridium sporogenes ATCC 15579] gi|187772524|gb|EDU36326.1| hypothetical protein CLOSPO_02494 [Clostridium sporogenes ATCC 15579] Length = 348 Score = 233 bits (594), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 138/365 (37%), Positives = 206/365 (56%), Gaps = 29/365 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +K E+++ + EEL+E L + + R QI+ WIY + I DF M +I ++ ++L Sbjct: 5 VKMENILDLTLEELKEWL----VSKEEKAFRAKQIFNWIYDKLIFDFNNMKNIPEKTKNL 60 Query: 64 LNQHFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L +F I P++V + IS D T K+L + I IE+V + K ++CVS+QV Sbjct: 61 LYDNFYIGVPKVVKKLISQDKNTYKFLFEYKDGNI-----IESVVMKYKHGNSICVSTQV 115 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC + ++RNLT+ EIL Q++ A+ +G +ISN+ Sbjct: 116 GCRMGCKFCASTLDGVIRNLTSGEILSQIMAAQ-----------------KEIGERISNV 158 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 V+MG GEPL NF NV K L + L+ +R ITLST G VP I + ++ + LAI Sbjct: 159 VLMGSGEPLDNFGNVTKFLDSVTSENTLNIGQRHITLSTCGIVPKIKELADKNYNITLAI 218 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH+ + LR ++PI KY ++ L++AC +Y +N RRITFEY ++KG NDS ++A Sbjct: 219 SLHSPEDLLRKEMMPIANKYSIKELMEACDYYINKTN-RRITFEYALVKGKNDSIKEAKE 277 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L +L+G +NLIP N Y S K+I +F +K +G + IR G DI AA Sbjct: 278 LSSVLRGKLCHVNLIPVNEIKENSYEKSTSKNIESFGNILKENGIETTIRREMGADINAA 337 Query: 362 CGQLK 366 CGQL+ Sbjct: 338 CGQLR 342 >gi|300726533|ref|ZP_07059979.1| radical SAM enzyme, Cfr family [Prevotella bryantii B14] gi|299776261|gb|EFI72825.1| radical SAM enzyme, Cfr family [Prevotella bryantii B14] Length = 349 Score = 233 bits (594), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 139/376 (36%), Positives = 211/376 (56%), Gaps = 30/376 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 L+K+SL+G+ +EL++ +G+P QI KW+Y ++ M+++S+ R Sbjct: 3 LEKKSLLGLTLDELKDVAKSLGMPA----FTGGQIAKWLYEYHVKSIDEMTNLSKANRQK 58 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L + ++I E +D + S DGT K+L FP G +ETV+IP++ R TLCVSSQVG Sbjct: 59 LEEQYTIGCAEAIDAQHSVDGTIKYL--FPT--ANGKF-VETVFIPDEDRATLCVSSQVG 113 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG Q +L+A +IL Q+ +P V K++NIV Sbjct: 114 CKMNCLFCQTGKQGFEGSLSAADILNQIY------------------SLPEVD-KLTNIV 154 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MG GEP+ N DNV ++ I + S G ++S +RIT+S+ G + R EE +AIS+ Sbjct: 155 FMGQGEPMDNLDNVLRATDILTASYGWAWSPKRITVSSVGVRNKLKRFLEESQCHVAISM 214 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ + R L+P R +E ++D R+Y S+ RR+TFEY++ G+NDS A +I Sbjct: 215 HSPIPEQRAELMPAQRGMSIEEVVDLLRNYD-FSHQRRLTFEYIVFGGVNDSTTHAREII 273 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+LKG+ +INLI F+ P +D+K + F + + G + IR RG DI AACG Sbjct: 274 KLLKGLDCRINLIRFHQIPEVALHGADEKTMENFRDYLTNHGIHTTIRASRGQDIFAACG 333 Query: 364 QLKSLSKRIPKVPRQE 379 L S SK+I K+ + Sbjct: 334 LL-STSKKIGKIRHDQ 348 >gi|307244457|ref|ZP_07526566.1| 23S rRNA m2A2503 methyltransferase [Peptostreptococcus stomatis DSM 17678] gi|306492150|gb|EFM64194.1| 23S rRNA m2A2503 methyltransferase [Peptostreptococcus stomatis DSM 17678] Length = 345 Score = 233 bits (593), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 147/368 (39%), Positives = 213/368 (57%), Gaps = 35/368 (9%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L + EEL++ L++IG + R SQI+ WIY R IRDF M++I + +R L +H Sbjct: 8 LKNLTEEELKDFLVEIG----EKKFRGSQIYSWIY-RNIRDFDEMNNIPKSLRTKLQEHA 62 Query: 69 SIIYPEI---VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I E +D KI DGT+K+L R I IETV + +R T+CVS+QVGC Sbjct: 63 VIGNIEKDLRLDSKI--DGTKKYLFRLNDGNI-----IETVAMDYDTRLTVCVSNQVGCR 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC + L RNL A EIL Q++ V +G+++SNIVMM Sbjct: 116 MGCRFCASTIDGLSRNLEAWEILDQII-----------------KVQEDLGKRVSNIVMM 158 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244 G GEPL N++N + L + ++ GL+ R ITLST G V I + + EI + LAISLH Sbjct: 159 GSGEPLDNYENSIRFLKLVNEKNGLNIGNRHITLSTCGIVDRIRDLADLEIPINLAISLH 218 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 + ++ R ++P+ KY +E +I+AC +Y G +N RRITFEY ++KG+NDS ++A ++K Sbjct: 219 SPFDEERQKIMPVANKYKVEQIIEACHYYIGKTN-RRITFEYSLIKGVNDSKKEAERIVK 277 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKG+ +NLIP NP ++ D I F ++++ IR G DI ACGQ Sbjct: 278 LLKGMLCHVNLIPINPIEERDFEKPDILYINKFKAYLEKNNIPVTIRNSMGADISGACGQ 337 Query: 365 L-KSLSKR 371 L +S+SKR Sbjct: 338 LRRSVSKR 345 >gi|148380460|ref|YP_001255001.1| radical SAM enzyme, Cfr family [Clostridium botulinum A str. ATCC 3502] gi|153932990|ref|YP_001384683.1| radical SAM protein [Clostridium botulinum A str. ATCC 19397] gi|153937048|ref|YP_001388204.1| radical SAM protein [Clostridium botulinum A str. Hall] gi|226949859|ref|YP_002804950.1| radical SAM enzyme, Cfr family [Clostridium botulinum A2 str. Kyoto] gi|205829625|sp|A7FW72|RLMN_CLOB1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829626|sp|A5I4T4|RLMN_CLOBH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|148289944|emb|CAL84057.1| radical SAM superfamily protein [Clostridium botulinum A str. ATCC 3502] gi|152929034|gb|ABS34534.1| radical SAM enzyme, Cfr family [Clostridium botulinum A str. ATCC 19397] gi|152932962|gb|ABS38461.1| radical SAM enzyme, Cfr family [Clostridium botulinum A str. Hall] gi|226842641|gb|ACO85307.1| radical SAM enzyme, Cfr family [Clostridium botulinum A2 str. Kyoto] Length = 342 Score = 233 bits (593), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 136/362 (37%), Positives = 205/362 (56%), Gaps = 29/362 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 E+++ EEL+E L I + R Q++ WIY + I DF M +I + ++LL+ Sbjct: 2 ENILDFTLEELKEWL----ISKEEKAFRAKQVFDWIYNKLIFDFNNMKNIPYKTKNLLSD 57 Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +F + P++V + +S D T K+L + I IE+V + K ++CVS+QVGC Sbjct: 58 NFYVGVPKVVKKLMSQDKNTYKFLFEYKDGNI-----IESVVMKYKHGNSICVSTQVGCR 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC + ++RNLT+ EIL Q++ A+ +G +ISN+V+M Sbjct: 113 MGCKFCASTLDGVIRNLTSGEILSQIMAAQ-----------------KEIGERISNVVLM 155 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G GEPL NF+NV K L + + L+ +R ITLST G VP I + ++ + LAISLH Sbjct: 156 GSGEPLDNFENVTKFLDLVTSDTTLNIGQRHITLSTCGIVPKIKELADKNYNITLAISLH 215 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 + + LR ++PI KY ++ L++AC +Y +N RRITFEY ++KG NDS ++A L Sbjct: 216 SPEDLLRKEMMPIANKYSIKELMEACDYYINKTN-RRITFEYALVKGKNDSIKEAKKLST 274 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKG +NLIP N Y S K+I +F +K +G + IR G DI AACGQ Sbjct: 275 VLKGKLCHVNLIPVNEIKENSYEKSTLKNIESFGNILKENGIETTIRREMGADINAACGQ 334 Query: 365 LK 366 L+ Sbjct: 335 LR 336 >gi|313203119|ref|YP_004041776.1| 23S rRNA m(2)a-2503 methyltransferase [Paludibacter propionicigenes WB4] gi|312442435|gb|ADQ78791.1| 23S rRNA m(2)A-2503 methyltransferase [Paludibacter propionicigenes WB4] Length = 350 Score = 233 bits (593), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 135/362 (37%), Positives = 200/362 (55%), Gaps = 31/362 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++L G+ +L+ +L +G+P SQ+ W+Y + + D M+++S++ R L Q Sbjct: 7 KNLFGLTLPQLKAEVLALGLPA----FTASQLADWMYKKRVTDIGSMTNLSKQAREKLQQ 62 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVE-IETVYIPEKSRGTLCVSSQVGCS 125 +S+ V + S DGT+K+L +P R P + IE YIP+K R TLCVS+Q+GC Sbjct: 63 AYSLHLVPSVSVQTSTDGTKKYL--YPTR----PQKFIEAAYIPDKDRATLCVSTQIGCK 116 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q NLT EIL Q+ L +F K++NIV M Sbjct: 117 MGCLFCMTGKQGFQGNLTTGEILNQM----QSLPEF---------------DKLTNIVYM 157 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N V S+ + + G +S +RIT+ST G +P + E LA+SLH+ Sbjct: 158 GMGEPLDNVQAVMDSIEVMTSPWGYDWSPKRITVSTIGIIPAMMTFLENSKAHLAVSLHS 217 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +D R ++PI YP+ ++ R + L + RR++FEY+M KG+ND+PR A L+++ Sbjct: 218 PFDDERRDIMPIQSVYPITEVVSNIRRWE-LGSQRRVSFEYIMFKGVNDTPRHANELVRL 276 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L GI +INLI F+P P + +DIV F +K G + IR RG DI AACG L Sbjct: 277 LNGIKCRINLIRFHPIPDTPLEGTALEDIVDFQNRLKAKGLTVTIRASRGEDIFAACGML 336 Query: 366 KS 367 + Sbjct: 337 ST 338 >gi|150016033|ref|YP_001308287.1| radical SAM protein [Clostridium beijerinckii NCIMB 8052] gi|205829735|sp|A6LSK1|RLMN_CLOB8 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|149902498|gb|ABR33331.1| radical SAM enzyme, Cfr family [Clostridium beijerinckii NCIMB 8052] Length = 353 Score = 233 bits (593), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 133/336 (39%), Positives = 195/336 (58%), Gaps = 26/336 (7%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD-EKISCDGTRKWLLR 91 R QI WIY +G+++F M +I + + L ++F + P+I++ K + DGT K+LL Sbjct: 24 FRGQQILSWIY-KGVKEFDNMKNIPKPLVQKLKENFFVGLPKIIEVYKSNIDGTEKFLLG 82 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 F + IE+V + K ++C+S+QVGC++ C FC + + VRNLT EIL Q+ Sbjct: 83 FKDGNL-----IESVLMRYKHGNSICISTQVGCAMGCKFCASTIEGKVRNLTTGEILSQI 137 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 ++ + + + +ISN+V+MG GEPL N++NV K L I S L+ Sbjct: 138 MVVQDYINE-----------------RISNVVLMGSGEPLDNYNNVIKFLEIVSAEYALN 180 Query: 212 FSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 +R ITLST G VP I + + E+ + LA+SLHA SND R ++PI +Y +E +++AC Sbjct: 181 IGQRHITLSTCGIVPKIYELADKELSITLALSLHAFSNDKRKEIMPIANRYSIEEILEAC 240 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 R+Y +N RRITFEY ++K +ND DA L K+LKG+ +NLIP N Y S Sbjct: 241 RYYINKTN-RRITFEYALVKDVNDGREDAKALGKLLKGMLCHVNLIPVNEIKENTYKRSS 299 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +K I FSE +K G R G DI AACGQL+ Sbjct: 300 KKAIEDFSEILKNHGIEVTTRREMGSDINAACGQLR 335 >gi|319744504|gb|EFV96859.1| cfr family radical SAM enzyme [Streptococcus agalactiae ATCC 13813] Length = 374 Score = 233 bits (593), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 139/368 (37%), Positives = 210/368 (57%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+EL + I + R SQIW W+Y + ++ F M++IS++ LLN Sbjct: 17 KPSIYSLTRDEL----IAWAIEHGEKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLN 72 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 ++F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 73 ENFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 125 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI Q++L + D G G ++S+IV Sbjct: 126 CNIGCTFCASGLIKKQRDLNNGEITAQIMLVQKYF-------DERGQ-----GERVSHIV 173 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+ NV K L +D GL+ R IT+STSG I E + V LA+S Sbjct: 174 VMGIGEPFDNYTNVLKFLRTVNDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVS 233 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +NDLR+ ++ INR +PLE L A +Y +N RR+TFEY+ML G+ND+P +A L Sbjct: 234 LHAPNNDLRSSIMRINRSFPLEKLFAAIEYYIETTN-RRVTFEYIMLNGVNDTPENAQEL 292 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 + K I + +NLIP+NP +Y S ++ + F + +K++G + +R G DI Sbjct: 293 ADLTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYDVLKKNGVNCVVRQEHGTDID 352 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 353 AACGQLRS 360 >gi|168182583|ref|ZP_02617247.1| radical SAM enzyme, Cfr family [Clostridium botulinum Bf] gi|237795945|ref|YP_002863497.1| ribosomal RNA large subunit methyltransferase N [Clostridium botulinum Ba4 str. 657] gi|182674240|gb|EDT86201.1| radical SAM enzyme, Cfr family [Clostridium botulinum Bf] gi|229262363|gb|ACQ53396.1| radical SAM enzyme, Cfr family [Clostridium botulinum Ba4 str. 657] Length = 342 Score = 233 bits (593), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 138/362 (38%), Positives = 205/362 (56%), Gaps = 29/362 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 E+++ EEL+E L I + R Q++ WIY + I DF M +I + ++LL+ Sbjct: 2 ENILDFTLEELKEWL----ISKEEKGFRAKQVFDWIYNKLIFDFNNMKNIPYKTKNLLSD 57 Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +F I P++V + +S D T K+L + G V IE+V + K ++CVS+QVGC Sbjct: 58 NFYIGVPKVVKKLMSQDKNTYKFLFEYK----DGNV-IESVVMKYKHGNSICVSTQVGCR 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC + ++RNLT+ EIL Q++ A+ +G +ISN+V+M Sbjct: 113 MGCKFCASTLDGVIRNLTSGEILSQIMAAQ-----------------KEIGERISNVVLM 155 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G GEPL NF NV K L + + L+ +R ITLST G VP I + ++ + LAISLH Sbjct: 156 GSGEPLDNFKNVTKFLDLVTSDTTLNIGQRHITLSTCGIVPKIKELADKNYNITLAISLH 215 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 + + LR ++PI KY ++ L++AC +Y +N RRITFEY ++KG NDS ++A L Sbjct: 216 SPEDLLRKEMMPIANKYSIKELMEACDYYINKTN-RRITFEYALVKGKNDSIKEAKKLST 274 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKG +NLIP N Y S K+I +F +K +G + IR G DI AACGQ Sbjct: 275 VLKGKLCHVNLIPVNEIKENSYEKSTSKNIESFGNILKENGIETTIRREMGADINAACGQ 334 Query: 365 LK 366 L+ Sbjct: 335 LR 336 >gi|256762921|ref|ZP_05503501.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|256684172|gb|EEU23867.1| conserved hypothetical protein [Enterococcus faecalis T3] Length = 357 Score = 233 bits (593), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 136/379 (35%), Positives = 220/379 (58%), Gaps = 26/379 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++KES+ G+ RE+L + L G + R +Q+W+W+Y + + F MS+IS+ + L Sbjct: 1 MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVTSFSEMSNISKSLMIL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L ++FS+ + V + + DGT K+L P + + IETV + ++ ++CV++QVG Sbjct: 57 LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+LTA EI+ Q++ + D G ++ ++S++V Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYF-DERGLDE-----------RVSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+ NV L +D GL+ R IT+STSG P I + + V LAIS Sbjct: 160 VMGIGEPFDNYANVMNFLRTINDDKGLAIGARHITVSTSGLAPKIREFADSGLQVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N++R ++ INR +P+E L+ A Y +N RR+TFEY+ML +ND P A L Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKTN-RRVTFEYIMLSQVNDRPEHAQQL 278 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 +L+ + +NLIP+NP +Y S ++ ++ F + +K++G + IR G DI Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338 Query: 360 AACGQLKSLSKRIPKVPRQ 378 AACGQL+S + KV Q Sbjct: 339 AACGQLRSKQMKKEKVKNQ 357 >gi|325286898|ref|YP_004262688.1| Ribosomal RNA large subunit methyltransferase N [Cellulophaga lytica DSM 7489] gi|324322352|gb|ADY29817.1| Ribosomal RNA large subunit methyltransferase N [Cellulophaga lytica DSM 7489] Length = 347 Score = 233 bits (593), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 132/367 (35%), Positives = 212/367 (57%), Gaps = 26/367 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK+ + + +E++ + Q R +Q+++W++ +G F+ M+++S+E R LL Sbjct: 5 KKKDIRALTKEQIRAFF----VAQGDKAFRGNQVYEWLWQKGAHSFEAMTNVSKETRQLL 60 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + +F I + ++ + S DGT K ++ I +E+V IP K+R T CVSSQVGC Sbjct: 61 DDNFVINHIKVDQMQRSSDGTIKNAVQLHDGLI-----VESVLIPTKTRTTACVSSQVGC 115 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 SL C FC T K +RNL +EI QV+ I+ RK+SNIV Sbjct: 116 SLDCRFCATSRLKRMRNLNPDEIYDQVVA-------------IDNESRLYFDRKLSNIVF 162 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAIS 242 MGMGEPL N++NV K++ + + GL+ S +RIT+STSG VP + + +E+ LA+S Sbjct: 163 MGMGEPLMNYNNVLKAIDKITSTEGLAMSPKRITVSTSG-VPKMIKKMADDEVKFKLAVS 221 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LH+ +++R ++P N +PL+ L +A +++ + +R IT+EYV+ GIND+ DA L Sbjct: 222 LHSAVDEIRTSIMPFNATFPLKDLREALQYWYAKTKSR-ITYEYVVWDGINDTQNDANAL 280 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + + P+K+NLI +NP E+ + K I + ++R+G + +R RG DI AAC Sbjct: 281 VDFCRFAPSKVNLIEYNPIDDGEFQQASNKAIDMYVTTLERNGITVTVRRSRGKDIDAAC 340 Query: 363 GQLKSLS 369 GQL + S Sbjct: 341 GQLANKS 347 >gi|257084807|ref|ZP_05579168.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|256992837|gb|EEU80139.1| conserved hypothetical protein [Enterococcus faecalis Fly1] Length = 357 Score = 233 bits (593), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 136/379 (35%), Positives = 220/379 (58%), Gaps = 26/379 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++KES+ G+ RE+L + L G + R +Q+W+W+Y + + F MS+I + + L Sbjct: 1 MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNIPKSLMTL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L ++FS+ + V + + DGT K+L P + + IETV + ++ ++CV++QVG Sbjct: 57 LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+LTA EI+ Q++ + D G ++ ++S++V Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYF-DERGLDE-----------RVSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+ NV L +D GL+ R IT+STSG VP I + + V LAIS Sbjct: 160 VMGIGEPFDNYANVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N++R ++ INR +P+E L+ A Y +N RR+TFEY+ML +ND P A L Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKTN-RRVTFEYIMLSQVNDRPEHAQQL 278 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 +L+ + +NLIP+NP +Y S ++ ++ F + +K++G + IR G DI Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338 Query: 360 AACGQLKSLSKRIPKVPRQ 378 AACGQL+S + KV Q Sbjct: 339 AACGQLRSKQMKKEKVENQ 357 >gi|315646180|ref|ZP_07899300.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus vortex V453] gi|315278379|gb|EFU41695.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus vortex V453] Length = 346 Score = 232 bits (592), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 130/354 (36%), Positives = 200/354 (56%), Gaps = 25/354 (7%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 EEL+ + G P R +QI+ W+YV+ + DF+ M+++S+E+R L Q FS + Sbjct: 11 EELQAWAQENGEPA----FRGTQIYDWLYVKRVNDFEEMTNLSKELRGKLEQQFSFVTLS 66 Query: 75 IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134 + + S DGT K+L + IETV + ++CV++QVGC + C+FC + Sbjct: 67 EITKLESKDGTVKFLF-----GLHDDHAIETVIMKHNYGNSICVTTQVGCRIGCTFCAST 121 Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194 L RNLT+ EI+ QV+ A+ +L G ++S+IV+MG GEP N+ Sbjct: 122 LGGLKRNLTSGEIVAQVVQAQKIL--------------DKTGERVSSIVIMGSGEPFENY 167 Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNI 253 + K L GL+ +R IT+STSG VPNI + EE + LAIS+HA ++ LR+ Sbjct: 168 EATMKFLRTMIHEKGLNIGQRHITVSTSGIVPNIYKFTEENTQINLAISIHAPNDKLRSK 227 Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313 L+P+NR++P + +I++ RHY RRITFEY ++ G+ND A L ++K + + Sbjct: 228 LMPVNRRFPFDDVIESLRHYQA-KTGRRITFEYALIGGVNDQVEHAEELADVIKDMNCFV 286 Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 NLIP N P +Y+ + + DI F + G + IR +G DI AACGQL++ Sbjct: 287 NLIPVNHVPERKYVRTSRNDIFKFQRALADKGVNVTIRREQGHDIAAACGQLRA 340 >gi|22536637|ref|NP_687488.1| ribosomal RNA large subunit methyltransferase N [Streptococcus agalactiae 2603V/R] gi|76797765|ref|ZP_00780032.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae 18RS21] gi|77405571|ref|ZP_00782661.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae H36B] gi|81588624|sp|Q8E1A3|RLMN_STRA5 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|22533475|gb|AAM99360.1|AE014212_19 conserved hypothetical protein TIGR00048 [Streptococcus agalactiae 2603V/R] gi|76586913|gb|EAO63404.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae 18RS21] gi|77175793|gb|EAO78572.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae H36B] Length = 368 Score = 232 bits (592), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 139/368 (37%), Positives = 210/368 (57%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+EL + I + R SQIW W+Y + ++ F M++IS++ LLN Sbjct: 11 KPSIYSLTRDEL----IAWAIEHGEKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLN 66 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 ++F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 67 ENFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 119 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI Q++L + D G G ++S+IV Sbjct: 120 CNIGCTFCASGLIKKQRDLNNGEITAQIMLVQKYF-------DERGQ-----GERVSHIV 167 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+ NV K L +D GL+ R IT+STSG I E + V LA+S Sbjct: 168 VMGIGEPFDNYTNVLKFLRTVNDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVS 227 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +NDLR+ ++ INR +PLE L A +Y +N RR+TFEY+ML G+ND+P +A L Sbjct: 228 LHAPNNDLRSSIMRINRSFPLEKLFAAIEYYIETTN-RRVTFEYIMLNGVNDTPENAQEL 286 Query: 303 IKILKGIP--AKINLIPFNP-WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 + K I + +NLIP+NP +Y S ++ + F + +K++G + +R G DI Sbjct: 287 ADLTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYDVLKKNGVNCVVRQEHGTDID 346 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 347 AACGQLRS 354 >gi|315919828|ref|ZP_07916068.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313693703|gb|EFS30538.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 344 Score = 232 bits (592), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 133/364 (36%), Positives = 200/364 (54%), Gaps = 29/364 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K L+GM EL+ ++G+P QI W+Y + + M+++S + R L Sbjct: 1 MSKYPLLGMTLVELQSLAKRLGMPG----FTAKQIVSWLYEKKVASIDEMTNLSLKHREL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L Q++ + VDE S DGT K+L + +G +E+VYIP+ R TLCVSSQVG Sbjct: 57 LKQNYEVGAAAPVDEMRSVDGTVKYLYK-----VGENHFVESVYIPDDDRATLCVSSQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG Q NLTA +I+ Q+ +P K++N+V Sbjct: 112 CKMNCKFCMTGKQGYTANLTASQIINQI------------------HSLPERD-KLTNVV 152 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N D V K+L + + + G ++S +RITLST G + R EE LAISL Sbjct: 153 MMGMGEPLDNLDEVLKALELLTANYGYAWSPKRITLSTVGLRKGLQRFIEENDCHLAISL 212 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ R+ L+P R Y + +++ ++Y S RR++FEY++ KG+NDS A L+ Sbjct: 213 HSPLTAQRSELMPAERAYSITEMVELLKNYD-FSKQRRLSFEYIVFKGLNDSQVYAKELL 271 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+L+G+ ++NLI F+ PG + +D + F + + G + IR+ RG DI AACG Sbjct: 272 KLLRGLDCRVNLIRFHAIPGVDLEGADMDTMTRFRDYLTSHGLFTTIRSSRGEDIFAACG 331 Query: 364 QLKS 367 L + Sbjct: 332 MLST 335 >gi|153939514|ref|YP_001391802.1| radical SAM protein [Clostridium botulinum F str. Langeland] gi|205829628|sp|A7GG92|RLMN_CLOBL RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|152935410|gb|ABS40908.1| radical SAM enzyme, Cfr family [Clostridium botulinum F str. Langeland] gi|295319828|gb|ADG00206.1| radical SAM enzyme, Cfr family [Clostridium botulinum F str. 230613] Length = 342 Score = 232 bits (592), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 136/362 (37%), Positives = 204/362 (56%), Gaps = 29/362 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 E+++ EEL+E L I + R Q++ WIY + I DF M +I + ++LL+ Sbjct: 2 ENILDFTLEELKEWL----ISKEEKAFRAKQVFDWIYNKLIFDFNNMKNIPYKTKNLLSD 57 Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +F + P++V + +S D T K+L + I IE+V + K ++CVS+QVGC Sbjct: 58 NFYVGVPKVVKKLMSQDKNTYKFLFEYKDGNI-----IESVVMKYKHGNSICVSTQVGCR 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC + ++RNLT+ EIL Q++ A+ +G +ISN+V+M Sbjct: 113 MGCKFCASTLDGVIRNLTSGEILSQIMAAQ-----------------KEIGERISNVVLM 155 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G GEPL NF NV K L + + L+ +R ITLST G VP I + ++ + LAISLH Sbjct: 156 GSGEPLDNFQNVTKFLDLVTSDTTLNIGQRHITLSTCGIVPKIKELADKNYNITLAISLH 215 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 + + LR ++PI KY ++ L++AC +Y +N RRITFEY ++KG NDS ++A L Sbjct: 216 SPEDLLRKEMMPIANKYSIKELMEACDYYINKTN-RRITFEYALVKGKNDSIKEAKKLST 274 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKG +NLIP N Y S K+I +F +K +G + IR G DI AACGQ Sbjct: 275 VLKGKLCHVNLIPVNEIKENSYEKSTLKNIESFGNILKENGIETTIRREMGADINAACGQ 334 Query: 365 LK 366 L+ Sbjct: 335 LR 336 >gi|121612139|ref|YP_001001357.1| radical SAM protein [Campylobacter jejuni subsp. jejuni 81-176] gi|167006246|ref|ZP_02272004.1| radical SAM enzyme, Cfr family protein [Campylobacter jejuni subsp. jejuni 81-176] gi|205829695|sp|A1W1W6|RLMN_CAMJJ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|87249061|gb|EAQ72023.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni 81-176] Length = 356 Score = 232 bits (592), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 139/352 (39%), Positives = 198/352 (56%), Gaps = 34/352 (9%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI++WIY + +F MS + +++R L Q+F + V + S DG+ K+L Sbjct: 23 FRVKQIYQWIYQKYANNFSDMSSLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFEL 82 Query: 93 PARCIGGPVEIETVYIPEK-------------SRGTLCVSSQVGCSLTCSFCYTGTQKLV 139 I G + +E+V +P K +R T+CVSSQVGC CSFC T L Sbjct: 83 ----IDG-LRVESVLLPMKKEKINTEGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLK 137 Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199 RNL+ EI+ Q+L + IP R NIV MGMGEPL N NV K Sbjct: 138 RNLSTGEIVGQILWIKKQNN------------IPYERR--VNIVYMGMGEPLDNLKNVSK 183 Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPIN 258 ++ I + + GL+ S RR T+STSG I +G+ +GV+LAISLHAV+++LR L+PIN Sbjct: 184 AVKILAQNDGLAISPRRQTISTSGLAKQIKELGQMNLGVLLAISLHAVNDELRTELMPIN 243 Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318 + Y + ++DA R +P + +R+ FEY+++ GIND A L+K+L GI AK+NLI F Sbjct: 244 KAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGINDKLEHAKELVKLLNGIKAKVNLILF 302 Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 NP G Y ++ + F + + G + IR +GLDI AACGQLK +K Sbjct: 303 NPHEGSLYKRPSLENAIKFQDLLSNKGVTCTIRESKGLDISAACGQLKERAK 354 >gi|171778734|ref|ZP_02919830.1| hypothetical protein STRINF_00682 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282691|gb|EDT48115.1| hypothetical protein STRINF_00682 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 366 Score = 232 bits (592), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 134/368 (36%), Positives = 218/368 (59%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ G+ R+EL E +++ G + R +QIW W+Y + ++ F+ M++IS++ +LN Sbjct: 9 KPSIYGLTRDELIEWVIEHG----EKKFRATQIWDWLYRKRVQSFEEMTNISKDFIAILN 64 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 ++F + + +V E + DGT K+L P + IETV + + ++CV+SQVG Sbjct: 65 ENFCVNPLKQRVVQE--ASDGTVKYLFELPDSML-----IETVLMRQHYGLSVCVTSQVG 117 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ CSFC +G K R+LT+ EI Q+++ + D G ++ ++S++V Sbjct: 118 CNIGCSFCASGLIKKQRDLTSGEITSQIMMVQKYF-DERGQDE-----------RVSHVV 165 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+DNV + + ++ GL+ R IT+STSG I E + V LA+S Sbjct: 166 VMGIGEPFDNYDNVLRFVRTINNDNGLAIGARHITISTSGLAHKIREFAHESLQVNLAVS 225 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ +NR +PLE L A +Y +N RR+TFEY+ML +NDSP +A L Sbjct: 226 LHAPNNELRSQIMRVNRSFPLEKLFTAIEYYIETTN-RRVTFEYIMLNDVNDSPENAQEL 284 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 + K I + INLIP+NP +Y S ++ + F + +K++G + +R G DI Sbjct: 285 ADLTKKIRKLSYINLIPYNPVSEHDQYRRSSKEHVAAFYDVLKKNGVNCVVRQEHGTDID 344 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 345 AACGQLRS 352 >gi|162447121|ref|YP_001620253.1| radical SAM superfamily Fe-S oxidoreductase [Acholeplasma laidlawii PG-8A] gi|205829657|sp|A9NEU7|RLMN_ACHLI RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|161985228|gb|ABX80877.1| Fe-S-cluster redox enzyme, radical SAM superfamily [Acholeplasma laidlawii PG-8A] Length = 338 Score = 232 bits (591), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 132/359 (36%), Positives = 209/359 (58%), Gaps = 32/359 (8%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 + EELEE +++ G + + R QIW W+Y + I F M++I +++ LLN +++ Sbjct: 6 LTYEELEEFIVENG----YKKFRADQIWNWLYKQKIEAFSEMNNIPEDIIKLLNDNYTFA 61 Query: 72 YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131 E V + S DGT K+L + IETV + + CV++QVGC++ CSFC Sbjct: 62 GLETVIKNTSADGTIKFLFDLKDANL-----IETVLMSHNYGMSACVTTQVGCNIGCSFC 116 Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191 +G K R+LTA EI+ Q++ A G ++S+IV+MG+GEP Sbjct: 117 ASGVLKKKRDLTAGEIVAQIIRAE-----------------KESGVRVSSIVIMGIGEPF 159 Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI---ARVGEEIGVMLAISLHAVSN 248 N+ N K +SI + GL+ R IT+STSG VP I A +G I V LA+SLHA +N Sbjct: 160 DNYKNFVKFISIVNHPKGLAIGARHITVSTSGLVPKIKEFAHLG--IQVNLAVSLHAPNN 217 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 ++R+ L+ IN ++ +E ++DA ++Y ++N RR+T EY+M++ +NDS A+ L K+LKG Sbjct: 218 EIRSKLMKINDRFKVEEVVDAIKYYIHVTN-RRVTIEYIMIQDLNDSVETAVELAKLLKG 276 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 + +NLIP+N +Y S ++ + F + +K ++ +R +G DI AACGQL+S Sbjct: 277 MNVYVNLIPYNTVKEADYQRSSLENRLAFHKTLKEHKITAILRKEQGHDINAACGQLRS 335 >gi|218563299|ref|YP_002345079.1| ribosomal RNA large subunit methyltransferase N [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|123042659|sp|Q0P7R8|RLMN_CAMJE RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|112361006|emb|CAL35807.1| putative radical SAM domain protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315926640|gb|EFV06020.1| radical SAM superfamily protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 356 Score = 232 bits (591), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 139/352 (39%), Positives = 199/352 (56%), Gaps = 34/352 (9%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI++WIY + +F MS + +++R L ++F + V + S DG+ K+L Sbjct: 23 FRVKQIYQWIYQKYANNFSDMSSLPKDLRLELARNFHFSPVKCVKNEQSKDGSIKYLFEL 82 Query: 93 PARCIGGPVEIETVYIPEK-------------SRGTLCVSSQVGCSLTCSFCYTGTQKLV 139 I G + +E+V +P K +R T+CVSSQVGC CSFC T L Sbjct: 83 ----IDG-LRVESVLLPMKEEKIDAEGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLK 137 Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199 RNL+A EI+ Q+L + IP R NIV MGMGEPL N NV K Sbjct: 138 RNLSAGEIVGQILWIKKQNN------------IPYERR--VNIVYMGMGEPLDNLKNVSK 183 Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPIN 258 ++ I + + GL+ S RR T+STSG I +G+ +GV+LAISLHAV+++LR L+PIN Sbjct: 184 AVKILAQNEGLAISPRRQTISTSGLAKQIKELGQMNLGVLLAISLHAVNDELRTELMPIN 243 Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318 + Y + ++DA R +P + +R+ FEY+++ GIND A L+K+L GI AK+NLI F Sbjct: 244 KAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGINDKLEHAKELVKLLNGIKAKVNLILF 302 Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 NP G Y ++ + F + + G + IR +GLDI AACGQLK +K Sbjct: 303 NPHEGSLYKRPSLENAIKFQDLLSNKGVTCTIRESKGLDISAACGQLKERAK 354 >gi|293402260|ref|ZP_06646398.1| radical SAM enzyme, Cfr family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304367|gb|EFE45618.1| radical SAM enzyme, Cfr family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 352 Score = 232 bits (591), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 129/361 (35%), Positives = 197/361 (54%), Gaps = 21/361 (5%) Query: 19 EALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE 78 E + ++ + + R QI++W+Y + + MSD+S+E R +L ++++ + D+ Sbjct: 10 EQMAELALSHEWKKFRGHQIFQWLYRKRVTSIDEMSDLSKETREILKANYALKPLTLKDK 69 Query: 79 KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKL 138 ++S DGT K+L + IE+V + ++CV+SQVGC+++C+FC +G K Sbjct: 70 QVSSDGTTKYLFALEDGSL-----IESVLMQFDYGKSICVTSQVGCNMSCAFCASGLTKK 124 Query: 139 VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVK 198 RNLT+ E++ QV+ + D E+ ++S+IV+MG GEP N++NV Sbjct: 125 KRNLTSGEMVAQVMYVQQ---DLDKQEE-----------RLSHIVVMGTGEPFDNYENVM 170 Query: 199 KSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPI 257 LS + GL R IT+ST G VP I +E LAISLHA +N LR+ L+PI Sbjct: 171 NFLSTVNHDRGLGIGARHITISTCGVVPKIYEFSKEHTQYNLAISLHAPNNTLRDELMPI 230 Query: 258 NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIP 317 N YPLE L+ A R Y N RR+TFEY++L+G+ND L K+L+G+ A +NLIP Sbjct: 231 NHAYPLEELMKAIRQYAA-ENNRRLTFEYILLRGVNDQKEHVKQLAKLLRGLNAYVNLIP 289 Query: 318 FNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPR 377 +N + D + F + + + G IR G DI AACGQL+ R R Sbjct: 290 YNAVDEKGFQGVDHAHAMVFYDALMKEGIRCTIRKEHGADIDAACGQLRVKHLRKEAKER 349 Query: 378 Q 378 Q Sbjct: 350 Q 350 >gi|222823067|ref|YP_002574640.1| radical SAM enzyme (Cfr family) [Campylobacter lari RM2100] gi|254807160|sp|B9KEA4|RLMN_CAMLR RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|222538288|gb|ACM63389.1| conserved hypothetical protein, radical SAM enzyme (Cfr family) [Campylobacter lari RM2100] Length = 356 Score = 232 bits (591), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 142/374 (37%), Positives = 210/374 (56%), Gaps = 42/374 (11%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++++ +EELE + + R QI++W+Y + DF MS + ++ R L + Sbjct: 5 KNMLDFTKEELENLV--------QPKFRAKQIFEWVYKKYADDFLQMSSLPKDFRVYLQK 56 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-------------SR 113 +F + V ++ S DG+ K+L + G +IE V +P K +R Sbjct: 57 NFHFSPLKCVKDEKSKDGSIKYLFEL----LDGK-KIEAVLLPMKEELVDENGKIIKHAR 111 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 T+CVSSQVGC CSFC T L RNL+A EI+ Q+L + + IP Sbjct: 112 YTICVSSQVGCKSGCSFCLTAKGGLSRNLSAGEIVGQILWIK------------KHNKIP 159 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233 R NIV MGMGEPL N NV K++ I +D+ L+ S RR T+STSG I +GE Sbjct: 160 YERR--VNIVYMGMGEPLDNLKNVSKAVKILADNDALAISPRRQTISTSGLAKQIKELGE 217 Query: 234 -EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 +GV+LAISLHAV+++LR+ L+PIN+ Y + +++A R++P + +R+ FEY+++ GI Sbjct: 218 MNLGVLLAISLHAVNDELRSELMPINKAYNIASIMEAVRNFP-IDQRKRVMFEYLLIDGI 276 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 ND A L+K+L GI AK+NLI FNP G Y ++ + F + + G + IR Sbjct: 277 NDKIEHAKELVKLLNGIKAKVNLILFNPHEGSLYNRPSVENAIKFQDYLSAKGVTCTIRE 336 Query: 353 PRGLDILAACGQLK 366 +GLDI AACGQLK Sbjct: 337 SKGLDISAACGQLK 350 >gi|288818052|ref|YP_003432399.1| radical SAM enzyme, Cfr family [Hydrogenobacter thermophilus TK-6] gi|288787451|dbj|BAI69198.1| radical SAM enzyme, Cfr family [Hydrogenobacter thermophilus TK-6] gi|308751653|gb|ADO45136.1| radical SAM enzyme, Cfr family [Hydrogenobacter thermophilus TK-6] Length = 360 Score = 232 bits (591), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 132/358 (36%), Positives = 210/358 (58%), Gaps = 32/358 (8%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 EEL+E+L K+G+P + R Q+ W+Y + DF M+DIS+E R LL +++ + E Sbjct: 10 EELKESLSKMGMP----KYRAVQVLGWVYKKFQTDFDAMTDISKEDRKLLKENYRVHTLE 65 Query: 75 IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134 + DE + + + K+L + + G IE+V I E+ TLCVSSQ+GC++ C FC T Sbjct: 66 LTDE-VHAEDSVKYLFK----TLDGHT-IESVLIRERDHLTLCVSSQIGCAVGCKFCATA 119 Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194 L RNL +EI+ Q+L I+ ++P ++I N+V MGMGEPL N+ Sbjct: 120 IDGLTRNLRTDEIIDQLL-------------QIQKKILP---QRIRNVVFMGMGEPLANY 163 Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE---IGVMLAISLHAVSNDLR 251 +NV+K++ + G+ SKRRI++STSG + I R+ E+ V LA+SL+A S LR Sbjct: 164 ENVRKAVEVMVSPWGIDLSKRRISVSTSGLIAQIKRMSEDPIMREVNLAVSLNAPSQKLR 223 Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311 +++PI++ L L+ + YP RRI EYV++KG+ND DAL+L +++ Sbjct: 224 ELIMPISKTNNLSELMQVLKEYP-YPKGRRIMLEYVLIKGLNDKKEDALSLAQLIGKYKN 282 Query: 312 --KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 K+NLIP+NP P Y +++ F + + ++G S+ +R +G++I ACGQL+ Sbjct: 283 KFKVNLIPYNPDPELPYERPSIEEVYEFQKVLWQTGISTFVRLSKGINIFGACGQLRQ 340 >gi|51892489|ref|YP_075180.1| hypothetical protein STH1351 [Symbiobacterium thermophilum IAM 14863] gi|81610561|sp|Q67PQ7|RLMN_SYMTH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|51856178|dbj|BAD40336.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM 14863] Length = 371 Score = 232 bits (591), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 128/371 (34%), Positives = 216/371 (58%), Gaps = 28/371 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR-H 62 L ++ L GM EE+ + + +G P R R Q+++W+Y +G++DF M+++ +R H Sbjct: 21 LGRQPLPGMSLEEMADLMADLGEP----RFRAKQLFQWVYQKGVKDFDAMTNLPARLRQH 76 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L + + ++ GT K+L R + ++E+V + + ++CV++QV Sbjct: 77 LAGTTMLRLLEKETEQHDRRTGTTKYLFR-----LADGSQVESVLMRQSWGNSVCVTTQV 131 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C+FC + LVRNLTA EI+ Q+++ + L G +IS + Sbjct: 132 GCRMGCTFCASTVGGLVRNLTAGEIVDQIVMMQRELPQ---------------GERISTV 176 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 V+MG GEPL N+D+V K++ + D GL+ R IT+STSG VP + R+ EE + + LA+ Sbjct: 177 VLMGSGEPLENYDHVLKAVRLVHDPEGLNIGYRHITISTSGIVPGMRRLAEEGLPITLAL 236 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA +++LR L+P+ R +PL ++ A R Y G RR+T+EY++++G+ND P +A Sbjct: 237 SLHAPTDELRRQLMPVARIWPLAEVLAAAREY-GEKTGRRVTYEYILIEGVNDGPEEARQ 295 Query: 302 LIKILKGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L ++LKG A +NLIP NP +Y + + F E ++ +G ++ +R G +I A Sbjct: 296 LARLLKGALAHVNLIPMNPVAERPQYRRPGPERVNRFKEILESNGIATTVRREMGGEIDA 355 Query: 361 ACGQLKSLSKR 371 ACGQL++ ++R Sbjct: 356 ACGQLRNRAQR 366 >gi|307264804|ref|ZP_07546366.1| radical SAM enzyme, Cfr family [Thermoanaerobacter wiegelii Rt8.B1] gi|306920062|gb|EFN50274.1| radical SAM enzyme, Cfr family [Thermoanaerobacter wiegelii Rt8.B1] Length = 342 Score = 232 bits (591), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 141/361 (39%), Positives = 204/361 (56%), Gaps = 30/361 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L M EE+EE + IG R R QI+KWIY + I DF M+DIS+ +R L + Sbjct: 3 NLKDMTLEEMEEFFVNIG----ESRYRAKQIYKWIYDKKITDFDEMTDISKNLRSKLKEI 58 Query: 68 FSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I +I ++S D T K+L I IE V I + T CVS+QVGC++ Sbjct: 59 AYISQLKIEARRVSEVDDTVKYLFLLEDNNI-----IEGVAIKYRFGNTACVSTQVGCNM 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 CSFC + VR+L A E++ QV+ ++ GD+ KISNIV+MG Sbjct: 114 RCSFCASAIGGKVRDLKASEMIDQVI---AIDGDYG---------------KISNIVLMG 155 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 GEP N+D V K + I ++ GL R IT+ST G VP I + +E + V L+ISLHA Sbjct: 156 SGEPFDNYDEVMKFIKIVNNPQGLGIGGRHITISTCGIVPKIYQFADEKLQVNLSISLHA 215 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +++LR L+PIN+ YPLE L+ AC++Y + RRITFEY +++G+ND A L+ + Sbjct: 216 PNDELRTQLMPINKAYPLEELMKACKYYVEKTR-RRITFEYSLIEGVNDKKEHAYQLVDL 274 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG+ +NLIP N + ++ + ++ F + I+ +G S +R G DI AACGQL Sbjct: 275 LKGMLCHVNLIPINYVKEIGFKKANNEKVMMFKKIIEDAGISCTVRRELGSDIEAACGQL 334 Query: 366 K 366 + Sbjct: 335 R 335 >gi|168180611|ref|ZP_02615275.1| radical SAM enzyme, Cfr family [Clostridium botulinum NCTC 2916] gi|182668374|gb|EDT80353.1| radical SAM enzyme, Cfr family [Clostridium botulinum NCTC 2916] Length = 342 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 136/362 (37%), Positives = 205/362 (56%), Gaps = 29/362 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 E+++ EEL+E L I + R Q++ WIY + I DF M +I + ++LL+ Sbjct: 2 ENILDFTLEELKEWL----ISKEEKAFRAKQVFDWIYNKLIFDFNNMKNIPYKTKNLLSD 57 Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +F + P++V + +S D T K+L + I IE+V + K ++CVS+QVGC Sbjct: 58 NFYVGVPKVVKKLMSQDKNTYKFLFEYKDGNI-----IESVVMKYKHGNSICVSTQVGCR 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC + ++RNLT+ EIL Q++ A+ +G +ISN+V+M Sbjct: 113 MGCKFCASTLDGVIRNLTSGEILSQIMAAQ-----------------KEIGERISNVVLM 155 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G GEPL NF+NV K L + + L+ +R ITLST G VP I + ++ + LAISLH Sbjct: 156 GSGEPLDNFENVTKFLDLVTSDTTLNIGQRHITLSTCGIVPKIKELADKNYNITLAISLH 215 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 + + LR ++PI KY ++ L++AC +Y +N RRITFEY ++KG NDS ++A L Sbjct: 216 SPEDLLRKEMMPIANKYSIKELMEACDYYINKTN-RRITFEYALVKGKNDSIKEAKKLSI 274 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKG +NLIP N Y S K+I +F +K +G + IR G DI AACGQ Sbjct: 275 VLKGKLCHVNLIPVNEIKENSYEKSTLKNIESFGNILKENGIETTIRREMGADINAACGQ 334 Query: 365 LK 366 L+ Sbjct: 335 LR 336 >gi|228472503|ref|ZP_04057263.1| radical SAM enzyme, Cfr family [Capnocytophaga gingivalis ATCC 33624] gi|228275916|gb|EEK14672.1| radical SAM enzyme, Cfr family [Capnocytophaga gingivalis ATCC 33624] Length = 345 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 135/363 (37%), Positives = 210/363 (57%), Gaps = 25/363 (6%) Query: 11 GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70 + +EEL+ L G R +Q+++W++ +G F+ M+++S+E R LL++HF I Sbjct: 6 ALKKEELQAFFLSHG----EKAFRANQVYEWLWTKGAHSFEQMTNLSKETRQLLSEHFVI 61 Query: 71 IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130 + ++ + S DGT K +R + + +E+V IP +R T CVSSQVGCSL CSF Sbjct: 62 NHIKVDTMQRSEDGTIKNAVR-----LHDGLYVESVLIPTDTRITACVSSQVGCSLNCSF 116 Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 C T K +RNL+ +EI QVL I+ GR + NIV MGMGEP Sbjct: 117 CATARLKRMRNLSPDEIFDQVLT-------------IDQQSRLYYGRPLRNIVFMGMGEP 163 Query: 191 LCNFDNVKKSLS-IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248 L N+ NV K++ I S+ GL FS +RIT+STSG I ++ ++ + LA+SLH+ Sbjct: 164 LMNYPNVMKAIERITSEKEGLGFSPKRITVSTSGVSKLIRKMADDKVKFRLAVSLHSAIE 223 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 + RN ++P +PL L A +++ + +R IT+EYV+ KGINDSP+D L+ + Sbjct: 224 ETRNKIMPWTVDFPLTELRTALQYWYQQTKSR-ITYEYVVWKGINDSPKDVEALVAFCRF 282 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 P K+NLI +NP + +D+K + + ++ +G ++ IR RG DI AACGQL + Sbjct: 283 APCKVNLIEYNPIDEGLFEQADEKALQLYKRKLEEAGITTTIRYSRGKDIDAACGQLANK 342 Query: 369 SKR 371 +++ Sbjct: 343 NEK 345 >gi|332879827|ref|ZP_08447516.1| 23S rRNA m2A2503 methyltransferase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682204|gb|EGJ55112.1| 23S rRNA m2A2503 methyltransferase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 349 Score = 231 bits (589), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 133/362 (36%), Positives = 207/362 (57%), Gaps = 24/362 (6%) Query: 13 MREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIY 72 +R +E L +I R +Q+++W++ +G+ F+ M+++ + R +L++HF I + Sbjct: 8 IRAFTKEELRRIFEENGDQAFRGNQVYEWLWQKGVHSFEAMTNLPKATREMLDKHFVINH 67 Query: 73 PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132 ++ + S DGT K +R + +E+V IP +R T CVSSQVGCSL CSFC Sbjct: 68 IKVDVMQRSDDGTIKNAVRLHDGLL-----VESVLIPTDTRTTACVSSQVGCSLNCSFCA 122 Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192 T K +RNL +EI QV + I+ GR +SNIV MGMGEPL Sbjct: 123 TARLKRMRNLLPDEIFDQVRV-------------IDEQSKAFFGRPLSNIVFMGMGEPLM 169 Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAISLHAVSNDL 250 N++NV K++ + + GL S +RITLSTSG VP + + +E+ LA+SLH+ + + Sbjct: 170 NYNNVLKAIDKITSTEGLGMSAKRITLSTSG-VPKLIKKMADDEVKFKLAVSLHSAIDSV 228 Query: 251 RNILVPINRKYPLEMLIDACRH-YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309 R ++P N ++PL L +A ++ Y N RIT+EYV+ KGIND +D LIK K Sbjct: 229 RTSIMPFNEQFPLSELREALQYWYQKTKN--RITYEYVVWKGINDQRKDVEALIKFCKFA 286 Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369 P+K+NLI +NP E+ +D + + + ++ +G + +R RG DI AACGQL + + Sbjct: 287 PSKVNLIEYNPIDDGEFQQADSRALTLYQTMLEEAGITVTVRHSRGKDIDAACGQLANKT 346 Query: 370 KR 371 + Sbjct: 347 TK 348 >gi|307272756|ref|ZP_07554003.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0855] gi|306510370|gb|EFM79393.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0855] Length = 357 Score = 231 bits (589), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 136/379 (35%), Positives = 220/379 (58%), Gaps = 26/379 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++KES+ G+ RE+L + L G + R +Q+W+W+Y + + F MS+IS+ + L Sbjct: 1 MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNISKSLMTL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L ++FS+ + V + + DGT K+L P + + IETV + ++ ++CV++QVG Sbjct: 57 LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+LTA EI+ Q++ + D G ++ ++S++V Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYF-DERGLDE-----------RVSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+ NV L +D GL+ R IT+STSG VP I + + V LAIS Sbjct: 160 VMGIGEPFDNYANVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N++R ++ INR +P+E L+ A Y +N RR+TFEY+ML +ND P A L Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKTN-RRVTFEYIMLSQVNDRPEHAQQL 278 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 +L+ + +NLIP+NP +Y S ++ ++ F + +K++G + IR G DI Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338 Query: 360 AACGQLKSLSKRIPKVPRQ 378 AA GQL+S + KV Q Sbjct: 339 AAFGQLRSKQMKKEKVKNQ 357 >gi|320546296|ref|ZP_08040616.1| cfr family radical SAM enzyme [Streptococcus equinus ATCC 9812] gi|320449073|gb|EFW89796.1| cfr family radical SAM enzyme [Streptococcus equinus ATCC 9812] Length = 366 Score = 231 bits (589), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 135/368 (36%), Positives = 217/368 (58%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ G+ R+EL E ++ G + R +QIW W+Y + ++ F+ M++IS++ +LN Sbjct: 9 KPSIYGLTRDELIEWAIEHG----EKKFRATQIWDWLYRKRVQSFEEMTNISKDFIAILN 64 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 ++F + + IV E + DGT K+L P + IETV + + ++CV+SQVG Sbjct: 65 ENFCVNPLKQRIVQE--ASDGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTSQVG 117 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ CSFC +G K R+LT+ EI Q+++ + D G ++ ++S++V Sbjct: 118 CNMGCSFCASGLIKKQRDLTSGEITSQIMMVQKYF-DERGQDE-----------RVSHVV 165 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+DNV + + ++ GL+ R IT+STSG I E + V LA+S Sbjct: 166 VMGIGEPFDNYDNVLRFVRTINNDNGLAIGARHITISTSGLAHKIREFAHESLQVNLAVS 225 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ +NR +PLE L A +Y +N RR+TFEY+ML +NDSP +A L Sbjct: 226 LHAPNNELRSQIMRVNRSFPLEKLFAAIEYYVETTN-RRVTFEYIMLNDVNDSPENAQEL 284 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 + K I + INLIP+NP +Y S ++ + F + +K++G + +R G DI Sbjct: 285 ADLTKKIRKLSYINLIPYNPVSEHDQYSRSSKEHVAAFYDVLKKNGVNCVVRQEHGTDID 344 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 345 AACGQLRS 352 >gi|326389541|ref|ZP_08211108.1| radical SAM enzyme, Cfr family [Thermoanaerobacter ethanolicus JW 200] gi|325994546|gb|EGD52971.1| radical SAM enzyme, Cfr family [Thermoanaerobacter ethanolicus JW 200] Length = 342 Score = 231 bits (589), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 140/361 (38%), Positives = 204/361 (56%), Gaps = 30/361 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L M EE+EE + IG R R QI+KWIY + I DF M+DIS+ +R L + Sbjct: 3 NLKDMTLEEMEEFFVNIG----ESRYRAKQIYKWIYDKKITDFDEMTDISKNLRSKLKEI 58 Query: 68 FSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I +I ++S D T K+L I IE V I + T C+S+QVGC++ Sbjct: 59 AYISQLKIEARRVSEVDDTVKYLFLLEDNNI-----IEGVAIKYRFGNTACISTQVGCNM 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 CSFC + VR+L A E++ QV+ ++ GD+ KISNIV+MG Sbjct: 114 RCSFCASAIGGKVRDLKASEMVDQVI---AIDGDYG---------------KISNIVLMG 155 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 GEP N+D V K + I ++ GL R IT+ST G VP I + +E + V L+ISLHA Sbjct: 156 SGEPFDNYDEVMKFIKIVNNPHGLGIGSRHITISTCGIVPKIYQFADEKLQVNLSISLHA 215 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +++LR L+PIN+ YPLE L+ AC++Y + RRITFEY +++G+ND A L+ + Sbjct: 216 PNDELRTQLMPINKAYPLEELMKACKYYVEKTR-RRITFEYSLIEGVNDKKEHAYQLVDL 274 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG+ +NLIP N + ++ + ++ F + I+ +G S +R G DI AACGQL Sbjct: 275 LKGMLCHVNLIPINYVKEIGFKKANNEKVMMFKKIIEDAGISCTVRRELGSDIEAACGQL 334 Query: 366 K 366 + Sbjct: 335 R 335 >gi|77411450|ref|ZP_00787796.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae CJB111] gi|77162536|gb|EAO73501.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae CJB111] Length = 368 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 138/368 (37%), Positives = 210/368 (57%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+EL + I + R SQIW W+Y + ++ F M++IS++ LLN Sbjct: 11 KPSIYSLTRDEL----IAWAIEHGEKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLN 66 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 ++F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 67 ENFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 119 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI Q++L + D G G ++S+IV Sbjct: 120 CNIGCTFCASGLIKKQRDLNNGEITAQIMLVQKYF-------DERGQ-----GERVSHIV 167 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+ NV K L +D GL+ R IT+STSG I E + V LA+S Sbjct: 168 VMGIGEPFDNYTNVLKFLRTVNDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVS 227 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ INR +PLE L A +Y +N RR+TFEY+ML G+ND+P +A L Sbjct: 228 LHAPNNELRSSIMRINRSFPLEKLFAAIEYYIETTN-RRVTFEYIMLNGVNDTPENAQEL 286 Query: 303 IKILKGIP--AKINLIPFNP-WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 + K I + +NLIP+NP +Y S ++ + F + +K++G + +R G DI Sbjct: 287 ADLTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYDVLKKNGVNCVVRQEHGTDID 346 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 347 AACGQLRS 354 >gi|307722066|ref|YP_003893206.1| 23S rRNA m(2)A-2503 methyltransferase [Sulfurimonas autotrophica DSM 16294] gi|306980159|gb|ADN10194.1| 23S rRNA m(2)A-2503 methyltransferase [Sulfurimonas autotrophica DSM 16294] Length = 364 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 142/373 (38%), Positives = 216/373 (57%), Gaps = 38/373 (10%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+SL+ ++EL E L+K P R QI+ W+Y + +DF M +I + ++ L+ Sbjct: 5 KQSLLDFTQKELTE-LVK---PS----FRAKQIYGWMYHQYAQDFDAMKNIPKAMKEELS 56 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEI-----------ETVYIPEKSRG 114 Q + + +IV ++ S DGT K+L G VE E I ++++ Sbjct: 57 QKYIVNPLKIVRKEESSDGTIKYLFELQD---GKTVEAVWLKMKDAQIDENGEIIQEAKY 113 Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 T+CVS+QVGC + CSFC T R+L+A EI+ QV+ +L D + Sbjct: 114 TICVSTQVGCKVGCSFCLTAKGGFTRDLSAGEIVAQVV---NLKRDNAHKHN-------- 162 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE- 233 RKI NIV MGMGEPL N +N+ K++ I + GL+ S +R T+STSG I ++G+ Sbjct: 163 --RKI-NIVYMGMGEPLDNLENLAKAIEIFKEEEGLAISGKRQTVSTSGLSNKIDKLGKM 219 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++GV +AISLHAV ++LR L+P+N+ + + +I+A + +P + +R+ FEY+++K N Sbjct: 220 DLGVHIAISLHAVDDELRTELIPMNKAHNINSIIEAVKRFP-IDTRKRVMFEYLVIKNKN 278 Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353 D A L+K+L GI AK+NLI FNP+PG Y ++D+V F E + G S IR Sbjct: 279 DDLGSAKKLVKLLSGIKAKVNLIYFNPYPGTPYERPSREDMVKFQEYLINHGLLSTIRDS 338 Query: 354 RGLDILAACGQLK 366 +G+DI AACGQLK Sbjct: 339 KGIDISAACGQLK 351 >gi|167037727|ref|YP_001665305.1| ribosomal RNA large subunit methyltransferase N [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040388|ref|YP_001663373.1| ribosomal RNA large subunit methyltransferase N [Thermoanaerobacter sp. X514] gi|256752274|ref|ZP_05493137.1| radical SAM enzyme, Cfr family [Thermoanaerobacter ethanolicus CCSD1] gi|300914472|ref|ZP_07131788.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X561] gi|307724292|ref|YP_003904043.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X513] gi|320116142|ref|YP_004186301.1| radical SAM enzyme, Cfr family [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|205829918|sp|B0KA06|RLMN_THEP3 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829919|sp|B0K1Y9|RLMN_THEPX RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|166854628|gb|ABY93037.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X514] gi|166856561|gb|ABY94969.1| radical SAM enzyme, Cfr family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256748842|gb|EEU61883.1| radical SAM enzyme, Cfr family [Thermoanaerobacter ethanolicus CCSD1] gi|300889407|gb|EFK84553.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X561] gi|307581353|gb|ADN54752.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X513] gi|319929233|gb|ADV79918.1| radical SAM enzyme, Cfr family [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 342 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 141/361 (39%), Positives = 201/361 (55%), Gaps = 30/361 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L M EE+EE + IG R R QI+KWIY + + DF M+DIS+ +R L + Sbjct: 3 NLKDMTLEEMEEFFVNIG----ESRYRAKQIYKWIYGKKVTDFDQMTDISKNLRSKLKEI 58 Query: 68 FSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + +I + ++S D T K+L I IE V I + T CVS+QVGC++ Sbjct: 59 AYVSQLKIEERRVSEIDDTVKYLFLLEDGNI-----IEGVAIKYRFGNTACVSTQVGCNM 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 CSFC + VR+L A E++ QV M I S KISNIV+MG Sbjct: 114 RCSFCASAIGGKVRDLKASEMVDQV------------------MAIDSDYGKISNIVLMG 155 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 GEP N+D V K + I ++ GL R IT+ST G VP I + +E + V L+ISLHA Sbjct: 156 SGEPFDNYDEVMKFIKIVNNPHGLGIGSRHITISTCGIVPKIYQFADEKLQVNLSISLHA 215 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +++LR L+PIN+ YPLE L+ AC++Y + RRITFEY +++G+ND A L+ + Sbjct: 216 PNDELRTQLMPINKAYPLEELMKACKYYVDKTR-RRITFEYSLIEGVNDKKEHAYQLVDL 274 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG+ INLIP N + ++ + ++ F I+ +G S +R G DI AACGQL Sbjct: 275 LKGMLCHINLIPINYVREIGFKKANNEKVMMFKRIIEDAGISCTVRRELGSDIEAACGQL 334 Query: 366 K 366 + Sbjct: 335 R 335 >gi|170759295|ref|YP_001787821.1| radical SAM protein [Clostridium botulinum A3 str. Loch Maree] gi|205829629|sp|B1KX56|RLMN_CLOBM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|169406284|gb|ACA54695.1| radical SAM enzyme, Cfr family [Clostridium botulinum A3 str. Loch Maree] Length = 342 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 136/362 (37%), Positives = 204/362 (56%), Gaps = 29/362 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 E+++ EEL+E L I + R Q++ WIY + I DF M +I + ++LL+ Sbjct: 2 ENILDFTLEELKEWL----ISKEEKAFRAKQVFDWIYNKLIFDFNNMKNIPYKTKNLLSD 57 Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +F I P++V + +S D T K+L + I IE+V + K ++CVS+QVGC Sbjct: 58 NFYIGVPKVVKKLMSQDKNTYKFLFEYNDGNI-----IESVVMKYKHGNSICVSTQVGCR 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC + ++RNLT+ EIL Q++ A+ +G +ISN+V+M Sbjct: 113 MGCKFCASTLDGVIRNLTSGEILSQIMAAQ-----------------KEIGERISNVVLM 155 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G GEPL NF NV + L + + L+ +R ITLST G VP I + ++ + LAISLH Sbjct: 156 GSGEPLDNFKNVTEFLDLVTSDTTLNIGQRHITLSTCGIVPKIKELADKNYNITLAISLH 215 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 + + LR ++PI KY ++ L++AC +Y +N RRITFEY ++KG NDS ++A L Sbjct: 216 SPEDLLRKEMMPIANKYSIKELMEACDYYINKTN-RRITFEYALVKGKNDSIKEAKKLST 274 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKG +NLIP N Y S K+I +F +K +G + IR G DI AACGQ Sbjct: 275 VLKGKLCHVNLIPVNEIKENSYEKSTLKNIESFGNILKENGIETTIRREMGADINAACGQ 334 Query: 365 LK 366 L+ Sbjct: 335 LR 336 >gi|289578505|ref|YP_003477132.1| radical SAM enzyme, Cfr family [Thermoanaerobacter italicus Ab9] gi|289528218|gb|ADD02570.1| radical SAM enzyme, Cfr family [Thermoanaerobacter italicus Ab9] Length = 342 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 140/361 (38%), Positives = 201/361 (55%), Gaps = 30/361 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L M EE+EE + IG R R QI+KWIY + I DF M+DIS+ +R L + Sbjct: 3 NLKNMTLEEMEEFFVNIG----ESRYRAKQIYKWIYGKKITDFDKMTDISKNLRSKLKEI 58 Query: 68 FSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I ++ ++S D T K+L + I IE V I + T CVS+QVGC++ Sbjct: 59 AYISQLKVEARRVSEIDNTVKYLFLLEDKNI-----IEGVAIKYRFGNTACVSTQVGCNM 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 CSFC + VR+L A E++ QV M I S KISNIV+MG Sbjct: 114 RCSFCASAIGGKVRDLKASEMVDQV------------------MSIDSDYGKISNIVLMG 155 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 GEP N+D V K + I ++ GL R IT+ST G +P I + +E + V L+ISLHA Sbjct: 156 SGEPFDNYDEVMKFIKIVNNPYGLGIGSRHITISTCGIIPKIYQFADEKLQVNLSISLHA 215 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +++LR L+PIN+ YPLE L+ AC++Y + RRITFEY +++G+ND A L+ + Sbjct: 216 PNDELRTQLMPINKAYPLEELMKACKYYIEKTR-RRITFEYSLIEGVNDKKEHAYQLVDL 274 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG+ +NLIP N + + + ++ F + I+ +G S +R G DI AACGQL Sbjct: 275 LKGMLCHVNLIPINYVKEIGFKKAANEKVMMFKKIIENAGISCTVRRELGSDIEAACGQL 334 Query: 366 K 366 + Sbjct: 335 R 335 >gi|325290448|ref|YP_004266629.1| 23S rRNA m(2)A-2503 methyltransferase [Syntrophobotulus glycolicus DSM 8271] gi|324965849|gb|ADY56628.1| 23S rRNA m(2)A-2503 methyltransferase [Syntrophobotulus glycolicus DSM 8271] Length = 351 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 143/370 (38%), Positives = 204/370 (55%), Gaps = 29/370 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K G+ E+E+ L+ GI + R Q+++W+ +G+R + M +I QE Sbjct: 1 MEKYDCRGLSEPEMEKLCLQNGIK----KFRADQVFRWVQQKGVRCWDEMKNIGQEDTDK 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-----EKSRGTLCV 118 L + F + EIV E++S DGTRK+L R P IETV + ++R T+CV Sbjct: 57 LKKVFCLQPLEIVKEQVSKDGTRKFLFRLP-----DGERIETVLMDYEKDLSRNRETVCV 111 Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 S+QVGC + C FC TG RNL+A EI QVL E + M I Sbjct: 112 STQVGCPVGCPFCATGVNGFHRNLSAGEITGQVL------------EIVRRMRINDPSFN 159 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGV 237 ++NIV MGMGEP N ++V K++ I + G RR+T+STSG VP I R+ EE V Sbjct: 160 VTNIVFMGMGEPFLNEESVLKAVRILNSENGQKIGMRRMTISTSGVVPGIIRLAEENKQV 219 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 LAISLH+ N LR+ILVP+NR+YPL+ L+ ACR Y RR+T E + L N + Sbjct: 220 GLAISLHSARNHLRDILVPMNRRYPLQQLMRACREYVN-QTGRRVTLE-IALTEANANKD 277 Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 +A LI++++G+P INLIP NP ++ I+ F ++ S +R +G D Sbjct: 278 EAEALIRLIQGMPVHINLIPVNPVTESSMQRPAKEKIMEFKTLLEAKNLSVTVREEKGTD 337 Query: 358 ILAACGQLKS 367 I AACGQL+ Sbjct: 338 IDAACGQLRQ 347 >gi|297584286|ref|YP_003700066.1| radical SAM enzyme, Cfr family [Bacillus selenitireducens MLS10] gi|297142743|gb|ADH99500.1| radical SAM enzyme, Cfr family [Bacillus selenitireducens MLS10] Length = 358 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 134/368 (36%), Positives = 210/368 (57%), Gaps = 26/368 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K S+ G+ ELE+ G + R Q+W W+YV+ IRDF M++I ++ L Sbjct: 1 MNKTSIYGLTFNELEDWFEGKG----EKKFRAKQVWDWLYVKRIRDFDDMTNIKKDTISL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + HF + E+ ++ S DGT+K+L + + IETV + ++CV++QVG Sbjct: 57 IKDHFYLESLELHSKQESKDGTKKFLFKLSDGNL-----IETVLMKFDYGNSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ CSFC +G K R+LT+ EI+ Q+L + + D ++S+IV Sbjct: 112 CNIGCSFCASGLLKKDRDLTSAEIVEQILKVQFDMDD------------KQTEERVSHIV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAIS 242 +MG+GEP N+DN+ L I + GL+ R IT+STSG V I A E + V LA+S Sbjct: 160 VMGIGEPFDNYDNLMSFLRIVNSDRGLAIGARHITVSTSGLVEKIRAFADENLQVNLAVS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +NDLR+ ++ IN+ P+E ++ A +Y +N RRIT EY++L G+ND P A L Sbjct: 220 LHAPNNDLRSSIMKINKGQPIEDVMSAIDYYLEKTN-RRITLEYILLDGVNDKPEHAKEL 278 Query: 303 IKILKGIP--AKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++++ INLIP+NP +Y S++ I+TF + + ++G +R +G DI Sbjct: 279 AELVRDKKKLTYINLIPYNPVDEYIQYKQSEKGAILTFYDLLMKNGVQCGVRHEQGSDID 338 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 339 AACGQLRS 346 >gi|76787054|ref|YP_329191.1| ribosomal RNA large subunit methyltransferase N [Streptococcus agalactiae A909] gi|123730855|sp|Q3K2R2|RLMN_STRA1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|76562111|gb|ABA44695.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae A909] Length = 368 Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 138/368 (37%), Positives = 210/368 (57%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+EL + I + R SQIW W+Y + ++ F M++IS++ LLN Sbjct: 11 KPSIYSLTRDEL----IAWAIEHGEKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLN 66 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 ++F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 67 ENFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 119 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI Q++L + D G G ++S+IV Sbjct: 120 CNIGCTFCASGLIKKQRDLNNGEITAQIMLVQKYF-------DERGQ-----GERVSHIV 167 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+ NV K L +D GL+ R IT+STSG I E + V LA+S Sbjct: 168 VMGIGEPFDNYTNVLKFLRTVNDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVS 227 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ INR +PLE L A +Y +N RR+TFEY+ML G+ND+P +A L Sbjct: 228 LHAPNNELRSSIMRINRSFPLEKLFAAIEYYIETTN-RRVTFEYIMLNGVNDTPENAQEL 286 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 + K I + +NLIP+NP +Y S ++ + F + +K++G + +R G DI Sbjct: 287 ADLTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYDVLKKNGVNCVVRQEHGTDID 346 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 347 AACGQLRS 354 >gi|25010575|ref|NP_734970.1| ribosomal RNA large subunit methyltransferase N [Streptococcus agalactiae NEM316] gi|77413558|ref|ZP_00789746.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae 515] gi|81588871|sp|Q8E6Q7|RLMN_STRA3 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|23094928|emb|CAD46149.1| Unknown [Streptococcus agalactiae NEM316] gi|77160387|gb|EAO71510.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae 515] Length = 368 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 138/368 (37%), Positives = 210/368 (57%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+EL + I + R SQIW W+Y + ++ F M++IS++ LLN Sbjct: 11 KPSIYSLTRDEL----IAWAIEHGEKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLN 66 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 ++F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 67 ENFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQYYGLSVCVTTQVG 119 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI Q++L + D G G ++S+IV Sbjct: 120 CNIGCTFCASGLIKKQRDLNNGEITAQIMLVQKYF-------DERGQ-----GERVSHIV 167 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+ NV K L +D GL+ R IT+STSG I E + V LA+S Sbjct: 168 VMGIGEPFDNYTNVLKFLRTVNDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVS 227 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ INR +PLE L A +Y +N RR+TFEY+ML G+ND+P +A L Sbjct: 228 LHAPNNELRSSIMRINRSFPLEKLFAAIEYYIETTN-RRVTFEYIMLNGVNDTPENAQEL 286 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 + K I + +NLIP+NP +Y S ++ + F + +K++G + +R G DI Sbjct: 287 ADLTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYDVLKKNGVNCVVRQEHGTDID 346 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 347 AACGQLRS 354 >gi|157415935|ref|YP_001483191.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni 81116] gi|205829693|sp|A8FP27|RLMN_CAMJ8 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|157386899|gb|ABV53214.1| hypothetical protein C8J_1617 [Campylobacter jejuni subsp. jejuni 81116] gi|307748573|gb|ADN91843.1| Ribosomal RNA large subunit methyltransferase N [Campylobacter jejuni subsp. jejuni M1] gi|315931319|gb|EFV10288.1| radical SAM superfamily protein [Campylobacter jejuni subsp. jejuni 327] Length = 356 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 139/352 (39%), Positives = 198/352 (56%), Gaps = 34/352 (9%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI++WIY + +F MS + + +R L Q+F + V + S DG+ K+L Sbjct: 23 FRVKQIYQWIYQKYANNFSDMSSLPKYLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFEL 82 Query: 93 PARCIGGPVEIETVYIPEK-------------SRGTLCVSSQVGCSLTCSFCYTGTQKLV 139 + G + +E+V +P K +R T+CVSSQVGC CSFC T L Sbjct: 83 ----VDG-LRVESVLLPMKEEKIDAEGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLK 137 Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199 RNL+A EI+ Q+L + + IP R NIV MGMGEPL N NV K Sbjct: 138 RNLSAGEIVGQILWIK------------KQNNIPYERR--VNIVYMGMGEPLDNLKNVSK 183 Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPIN 258 ++ I + + GL+ S RR T+STSG I +G+ +GV+LAISLHAV++ LR L+PIN Sbjct: 184 AVKILAQNDGLAISPRRQTISTSGLAKQIKELGQMNLGVLLAISLHAVNDGLRTELMPIN 243 Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318 + Y + ++DA R +P + +R+ FEY+++ GIND A L+K+L GI AK+NLI F Sbjct: 244 KAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGINDKLEHAKELVKLLNGIKAKVNLILF 302 Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 NP G Y ++ + F + + G + IR +GLDI AACGQLK +K Sbjct: 303 NPHEGSLYKRPSLENAIKFQDLLSSKGVTCTIRESKGLDISAACGQLKERAK 354 >gi|152993941|ref|YP_001359662.1| ribosomal RNA large subunit methyltransferase N [Sulfurovum sp. NBC37-1] gi|205829910|sp|A6QCU6|RLMN_SULNB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|151425802|dbj|BAF73305.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 359 Score = 230 bits (586), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 129/347 (37%), Positives = 200/347 (57%), Gaps = 30/347 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R+ QI+ WIY + F+ M ++ + +R L+ +++ + V + S DG+RK+L Sbjct: 24 FRSKQIYDWIYHKYAASFEEMKNLPKAMREELDAEYTLAPLKTVTVQDSMDGSRKYLFEL 83 Query: 93 PARCIGGPVEI-----------ETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141 G VE E + + R T+C+SSQVGC + C+FC T +RN Sbjct: 84 HD---GHTVEAVLLLMRDKEYHEDGSVKHQERYTVCISSQVGCKVGCAFCLTAKGGFMRN 140 Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 LTA EI+ Q+ + + DI + R++ NIV MGMGEPL N + V KS+ Sbjct: 141 LTAGEIVEQLRMIKK-------DNDI------AANRRV-NIVFMGMGEPLDNLEAVAKSV 186 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRK 260 I ++ G++ + R T+STSG I ++G+ E+GV LAISLHAV ++LR L+PIN+ Sbjct: 187 KIFAEEEGMAIAPHRQTISTSGLSSKIEKLGKMELGVNLAISLHAVDDELRQQLMPINKA 246 Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 Y +E +I A +++P +++ +R+ FEY+++K +ND A L+ +L GI AK+NLI FNP Sbjct: 247 YNIESIITAVKNFP-VNDRKRVMFEYLVIKDVNDDISAAKKLLSLLDGIKAKVNLIYFNP 305 Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 + G E+ + D+ F E + + G IR +GLDI AACGQL+ Sbjct: 306 YGGTEFKRPSEADMKKFQEYLTKRGLHCTIRESKGLDISAACGQLRE 352 >gi|27467811|ref|NP_764448.1| hypothetical protein SE0893 [Staphylococcus epidermidis ATCC 12228] gi|251810648|ref|ZP_04825121.1| Fe-S-cluster redox enzyme [Staphylococcus epidermidis BCM-HMP0060] gi|282876350|ref|ZP_06285217.1| radical SAM enzyme, Cfr family [Staphylococcus epidermidis SK135] gi|293366817|ref|ZP_06613493.1| cfr family radical SAM enzyme [Staphylococcus epidermidis M23864:W2(grey)] gi|81843839|sp|Q8CSW0|RLMN_STAES RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|27315355|gb|AAO04490.1|AE016746_280 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|251805808|gb|EES58465.1| Fe-S-cluster redox enzyme [Staphylococcus epidermidis BCM-HMP0060] gi|281295375|gb|EFA87902.1| radical SAM enzyme, Cfr family [Staphylococcus epidermidis SK135] gi|291319118|gb|EFE59488.1| cfr family radical SAM enzyme [Staphylococcus epidermidis M23864:W2(grey)] gi|329736269|gb|EGG72541.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis VCU028] gi|329736607|gb|EGG72873.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis VCU045] Length = 364 Score = 230 bits (586), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 126/371 (33%), Positives = 209/371 (56%), Gaps = 25/371 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +K+S+ + +E+++ L+ G + R QI++W+Y + + M+++S+E+R + Sbjct: 16 FEKQSIYSLRYDEMQQWLIDHG----QQKFRAKQIFEWLYQKRVNTIDEMTNLSKELRQI 71 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L HF++ V ++ S DGT K+L + IETV + + ++CV++QVG Sbjct: 72 LKDHFAMTTLTTVVKQESKDGTIKFLFE-----LQDGYTIETVLMRHEYGNSVCVTTQVG 126 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C+FC + L RNL A EI+ QVL + L + ++S IV Sbjct: 127 CRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TNERVSQIV 172 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+D + L I +D L+ R IT+STSG +P I EE I + A+S Sbjct: 173 IMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVS 232 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LH +++R+ L+PINR Y ++ L++A R+Y +N RR+TFEY + G+ND A +L Sbjct: 233 LHGAKDEIRSRLMPINRAYNVDKLMEAIRYYQEKTN-RRVTFEYGLFGGVNDQLEHARDL 291 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++K + +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AAC Sbjct: 292 AHLIKNLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAAC 351 Query: 363 GQLKSLSKRIP 373 GQL++ +++ Sbjct: 352 GQLRAKERQVE 362 >gi|329729989|gb|EGG66380.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis VCU144] Length = 364 Score = 230 bits (586), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 126/371 (33%), Positives = 209/371 (56%), Gaps = 25/371 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +K+S+ + +E+++ L+ G + R QI++W+Y + + M+++S+E+R + Sbjct: 16 FEKQSIYSLRYDEMQQWLIDHG----QQKFRAKQIFEWLYQKRVNTIDEMTNLSKELRQI 71 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L HF++ V ++ S DGT K+L + IETV + + ++CV++QVG Sbjct: 72 LKDHFAMTTLTTVVKQESKDGTIKFLFE-----LQDGYTIETVLMRHEYGNSVCVTTQVG 126 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C+FC + L RNL A EI+ QVL + L + ++S IV Sbjct: 127 CRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TNERVSQIV 172 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+D + L I +D L+ R IT+STSG +P I EE I + A+S Sbjct: 173 IMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVS 232 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LH +++R+ L+PINR Y ++ L++A R+Y +N RR+TFEY + G+ND A +L Sbjct: 233 LHGAKDEIRSRLMPINRAYNVDKLMEAIRYYQEKTN-RRVTFEYGLFGGVNDQLEHARDL 291 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++K + +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AAC Sbjct: 292 AHLIKNLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAAC 351 Query: 363 GQLKSLSKRIP 373 GQL++ +++ Sbjct: 352 GQLRAKERQVE 362 >gi|77408383|ref|ZP_00785123.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae COH1] gi|77172986|gb|EAO76115.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae COH1] Length = 368 Score = 230 bits (586), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 138/368 (37%), Positives = 210/368 (57%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+EL + I + R SQIW W+Y + ++ F M++IS++ LLN Sbjct: 11 KPSIYSLTRDEL----IAWAIEHGEKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLN 66 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 ++F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 67 ENFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQYYGLSVCVTTQVG 119 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI Q++L + D G G ++S+IV Sbjct: 120 CNIGCTFCASGLIKKQRDLNNGEITAQIMLVQKYF-------DERGQ-----GERVSHIV 167 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+ NV K L +D GL+ R IT+STSG I E + V LA+S Sbjct: 168 VMGIGEPFDNYTNVLKFLRTVNDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVS 227 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ INR +PLE L A +Y +N RR+TFEY+ML G+ND+P +A L Sbjct: 228 LHAPNNELRSSIMRINRSFPLEKLFAAIEYYIETTN-RRVTFEYIMLNGVNDTPENAQEL 286 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 + K I + +NLIP+NP +Y S ++ + F + +K++G + +R G DI Sbjct: 287 ADLTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYDVLKKNGVNCVVRQEHGTDID 346 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 347 AACGQLRS 354 >gi|86140644|ref|ZP_01059203.1| hypothetical protein MED217_15870 [Leeuwenhoekiella blandensis MED217] gi|85832586|gb|EAQ51035.1| hypothetical protein MED217_15870 [Leeuwenhoekiella blandensis MED217] Length = 347 Score = 230 bits (586), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 134/362 (37%), Positives = 205/362 (56%), Gaps = 26/362 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 ++ + + REEL + + Q R +Q+++W++V+G F M++IS+E R L+ Sbjct: 5 QKDIRALSREELRDFF----VSQGEKAFRGNQVYEWLWVKGAHSFDDMTNISKETRAFLD 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +HF I + ++ + S DGT K ++ + + +E+V IP SR T CVSSQVGCS Sbjct: 61 EHFVINHIKVDQMQRSSDGTIKNAVK-----LHDNLTVESVLIPTASRITACVSSQVGCS 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T K +RNL +EI QV+ I+ R +SNIV M Sbjct: 116 LNCKFCATARLKRMRNLNPDEIFDQVVA-------------IDQQSRLYHNRPLSNIVFM 162 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAISL 243 GMGEPL N+ NV KS+ +D GL S +RIT+STSG VP I + +E+ LA+SL Sbjct: 163 GMGEPLMNYKNVVKSIEKITDPEGLGMSPKRITVSTSG-VPKIIKKMADDEVKFNLAVSL 221 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ +D+R ++P N + PL+ L +A +++ + +RIT+EYV+ +GIND +D LI Sbjct: 222 HSALDDVRTDIMPFNEQMPLQELKEALQYW-YVKTKKRITYEYVVWRGINDQDKDIEALI 280 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +P+K+NLI +NP ++ +D I + ++ G + +R RG DI AACG Sbjct: 281 DFCLAVPSKVNLIEYNPIDDGQFQQADPLAIDRYVAKLEDRGITVTVRRSRGKDIDAACG 340 Query: 364 QL 365 QL Sbjct: 341 QL 342 >gi|57866756|ref|YP_188367.1| radical SAM protein [Staphylococcus epidermidis RP62A] gi|242242500|ref|ZP_04796945.1| Fe-S-cluster redox enzyme [Staphylococcus epidermidis W23144] gi|81674923|sp|Q5HPX3|RLMN_STAEQ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|57637414|gb|AAW54202.1| radical SAM enzyme, Cfr family [Staphylococcus epidermidis RP62A] gi|242234074|gb|EES36386.1| Fe-S-cluster redox enzyme [Staphylococcus epidermidis W23144] Length = 364 Score = 230 bits (586), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 126/371 (33%), Positives = 209/371 (56%), Gaps = 25/371 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +K+S+ + +E+++ L+ G + R QI++W+Y + + M+++S+E+R + Sbjct: 16 FEKQSIYSLRYDEMQQWLIDHG----QQKFRAKQIFEWLYQKRVNTIDEMTNLSKELRQI 71 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L HF++ V ++ S DGT K+L + IETV + + ++CV++QVG Sbjct: 72 LKDHFAMTTLTTVVKQESKDGTIKFLFE-----LQDGYTIETVLMRHEYGNSVCVTTQVG 126 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C+FC + L RNL A EI+ QVL + L + ++S IV Sbjct: 127 CRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TNERVSQIV 172 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+D + L I +D L+ R IT+STSG +P I EE I + A+S Sbjct: 173 IMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVS 232 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LH +++R+ L+PINR Y ++ L++A R+Y +N RR+TFEY + G+ND A +L Sbjct: 233 LHGAKDEIRSRLMPINRAYNVDKLMEAIRYYQEKTN-RRVTFEYGLFGGVNDQLEHARDL 291 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++K + +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AAC Sbjct: 292 AHLIKDLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAAC 351 Query: 363 GQLKSLSKRIP 373 GQL++ +++ Sbjct: 352 GQLRAKERQVE 362 >gi|255693933|ref|ZP_05417608.1| radical SAM enzyme, Cfr family [Bacteroides finegoldii DSM 17565] gi|260620244|gb|EEX43115.1| radical SAM enzyme, Cfr family [Bacteroides finegoldii DSM 17565] Length = 344 Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 134/365 (36%), Positives = 200/365 (54%), Gaps = 31/365 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K L+GM EL+ ++G+P QI W+Y + + M+++S + R L Sbjct: 1 MSKYPLLGMTLVELQALAKRLGMPS----FAAKQIASWLYEKKVTSIDEMTNLSLKHREL 56 Query: 64 LNQHFSI-IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L Q++ + ++P VDE S DGT K+L R +G +E+VYIP+ R TLCVSSQV Sbjct: 57 LKQNYEVGVFPP-VDEMRSVDGTVKYLYR-----VGDNHFVESVYIPDDDRATLCVSSQV 110 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG Q NLTA +I+ Q+ +P K++N+ Sbjct: 111 GCKMNCKFCMTGKQGFTANLTANQIINQI------------------HSLPERD-KLTNV 151 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL N D V K+L + + G ++S +RITLST G + R EE LAIS Sbjct: 152 VMMGMGEPLDNLDEVLKALEVLTAPYGYAWSPKRITLSTVGLRKGLRRFIEESDCHLAIS 211 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LH+ R+ L+P + + + +++ ++Y S RR++FEY++ KG+NDS A L Sbjct: 212 LHSPVAAQRSELMPAEKAFSITEMVELLKNY-DFSKQRRLSFEYIVFKGLNDSQIYAKEL 270 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +K+L+G+ +INLI F+ PG +D + F + + G + IR RG DI AAC Sbjct: 271 LKLLRGLDCRINLIRFHAIPGVNLEGADMDTMTRFRDYLTSHGLFTTIRASRGEDIFAAC 330 Query: 363 GQLKS 367 G L + Sbjct: 331 GMLST 335 >gi|213963853|ref|ZP_03392101.1| radical SAM enzyme, Cfr family [Capnocytophaga sputigena Capno] gi|213953533|gb|EEB64867.1| radical SAM enzyme, Cfr family [Capnocytophaga sputigena Capno] Length = 350 Score = 229 bits (585), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 136/364 (37%), Positives = 203/364 (55%), Gaps = 26/364 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K + + +EEL G R +Q+++W++ +G+ F+ M+ + + R + Sbjct: 2 MQKRDIRALTKEELRTFFESNG----DKAFRGNQVYEWLWQKGVHTFEAMTSLPKATREM 57 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +HFSI + ++ + S DGT K +R + +E+V IP +R T CVSSQVG Sbjct: 58 LAEHFSINHIKVDVMQRSNDGTIKNAVRLHDGLL-----VESVLIPTDTRTTACVSSQVG 112 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 CSL CSFC T K +RNL +EI QV + I+ GR +SNIV Sbjct: 113 CSLNCSFCATARLKRMRNLLPDEIFDQVKV-------------IDEQSRAFFGRPLSNIV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242 MGMGEPL N++NV K++ + GL S +RITLSTSG I ++ + E+ LA+S Sbjct: 160 FMGMGEPLMNYNNVLKAIDKITSPEGLGMSPKRITLSTSGIPKLIKKMADDEVKFKLAVS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRH-YPGLSNARRITFEYVMLKGINDSPRDALN 301 LH+ +R ++P N ++PLE L DA + Y N RIT+EYV+ KGIND +D Sbjct: 220 LHSAIGSVRTGIMPFNEQFPLEELRDALAYWYQKTKN--RITYEYVVWKGINDQKKDVEA 277 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 LIK K P+K+NLI +NP ++ +D K + + ++ +G + +R RG DI AA Sbjct: 278 LIKFCKFAPSKVNLIEYNPIDDGDFQQADPKALELYQTMLEAAGITVTVRHSRGKDIDAA 337 Query: 362 CGQL 365 CGQL Sbjct: 338 CGQL 341 >gi|163782714|ref|ZP_02177710.1| hypothetical protein HG1285_15301 [Hydrogenivirga sp. 128-5-R1-1] gi|159881835|gb|EDP75343.1| hypothetical protein HG1285_15301 [Hydrogenivirga sp. 128-5-R1-1] Length = 349 Score = 229 bits (585), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 140/358 (39%), Positives = 197/358 (55%), Gaps = 33/358 (9%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 EEL E + +G+ + R Q+ KW+Y + DF M+D+ +E R LL F E Sbjct: 10 EELRERFVSLGLE----KYRAGQVLKWLYKKLTTDFSSMTDLPKEQRRLLEDTFRFHPLE 65 Query: 75 IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134 +D ++ +RK+L R I +ETV I E+ TLCVSSQVGC++ C+FC T Sbjct: 66 KLD-RVDAPDSRKYLFRTHDGHI-----VETVLIRERDHLTLCVSSQVGCAVGCTFCATA 119 Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194 L RNLT+ EIL Q L + D P KI N+V MGMGEPL N+ Sbjct: 120 IDGLRRNLTSAEILDQFLQVQK---DSP--------------EKIRNVVFMGMGEPLANY 162 Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE---IGVMLAISLHAVSNDLR 251 DNV+K+ I GL SKRR+T+STSG V + R+ E+ + LA+SL+A R Sbjct: 163 DNVRKAAEIMVSPWGLDLSKRRVTVSTSGLVAQLRRMAEDPIMRELNLAVSLNAPRQSTR 222 Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311 ++PI RK L L++ YP L RRIT EYV++K +NDS RDA L ++L+ Sbjct: 223 ESIMPITRKNTLSELMEVLVKYP-LPRYRRITLEYVLIKDLNDSKRDAEELAELLRRHRK 281 Query: 312 --KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 K+NLIPFNP P Y + ++ F + + G S+ +R +G+D+ ACGQL++ Sbjct: 282 RFKVNLIPFNPDPNLPYERPELTRVLNFQKVLWERGISTFVRFSKGVDVFGACGQLRA 339 >gi|302389594|ref|YP_003825415.1| 23S rRNA m(2)A-2503 methyltransferase [Thermosediminibacter oceani DSM 16646] gi|302200222|gb|ADL07792.1| 23S rRNA m(2)A-2503 methyltransferase [Thermosediminibacter oceani DSM 16646] Length = 346 Score = 229 bits (585), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 138/368 (37%), Positives = 217/368 (58%), Gaps = 36/368 (9%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K +L GM EEL++ ++ +G P R QI++WIY +G+ DF+ M+D+ + + Sbjct: 1 MAKTNLKGMTVEELQDFIVSLGEPP----YRARQIFRWIY-KGVTDFEKMTDLPRTLVEK 55 Query: 64 LNQHFSI----IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119 L + I IY + K D T K+L I IE+V + ++CVS Sbjct: 56 LKELSYIDKIGIYKKFQSRK---DATVKYLFLLSDNNI-----IESVKMEHSYGVSVCVS 107 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 SQVGC++ C+FC + L R+L + E++ Q+L+ + EDI+ ++I Sbjct: 108 SQVGCAMGCAFCASTIDGLKRSLNSGEMVDQILVIQ---------EDIK--------KRI 150 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238 S++V+MG GEPL N+D + K L+I + + + S RRIT+ST G VP I R+ +E + + Sbjct: 151 SHVVIMGSGEPLLNYDELIKFLNIINSPLAFNISYRRITVSTCGIVPEIRRLADEGLPIT 210 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 L++SLHA +DLR+ LVP+NR+YP+ L+DAC++Y +N RRITFEY ++ +NDS Sbjct: 211 LSVSLHAPEDDLRDKLVPVNRRYPILELLDACKYYIIKTN-RRITFEYALISDVNDSKEC 269 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A+ L ++LKG+ +NLIP NP +++ S ++I F E ++ G S +R G DI Sbjct: 270 AVKLARLLKGLLCHVNLIPLNPVRERDFMRSKPENIRLFQEILRHYGISVTVRQEMGADI 329 Query: 359 LAACGQLK 366 AACGQL+ Sbjct: 330 EAACGQLR 337 >gi|237715676|ref|ZP_04546157.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262408684|ref|ZP_06085230.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294807293|ref|ZP_06766107.1| radical SAM enzyme, Cfr family [Bacteroides xylanisolvens SD CC 1b] gi|299148689|ref|ZP_07041751.1| radical SAM enzyme, Cfr family [Bacteroides sp. 3_1_23] gi|229444385|gb|EEO50176.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262353549|gb|EEZ02643.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294445591|gb|EFG14244.1| radical SAM enzyme, Cfr family [Bacteroides xylanisolvens SD CC 1b] gi|298513450|gb|EFI37337.1| radical SAM enzyme, Cfr family [Bacteroides sp. 3_1_23] Length = 344 Score = 229 bits (585), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 131/364 (35%), Positives = 199/364 (54%), Gaps = 29/364 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K L+GM EL+ ++G+P QI W+Y + + M+++S + R L Sbjct: 1 MSKYPLLGMTLVELQSLTKRLGMPG----FAAKQIASWLYEKKVASIDDMTNLSLKHREL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L Q++ + VDE S DGT K+L + +G +E+VYIP+ R TLCVSSQVG Sbjct: 57 LKQNYEVGAEAPVDEMRSVDGTVKYLYK-----VGENHFVESVYIPDDDRATLCVSSQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG Q NLTA +I+ Q+ +P K++N+V Sbjct: 112 CKMNCKFCMTGKQGYTANLTASQIMNQI------------------HSLPERD-KLTNVV 152 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N D V K+L + + + G ++S +RITLST G + R EE LAISL Sbjct: 153 MMGMGEPLDNLDEVLKALELLTATYGYAWSPKRITLSTVGLRKGLQRFIEENDCHLAISL 212 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ R L+P + + + +++ ++Y S RR++FEY++ KG+NDS A L+ Sbjct: 213 HSPLTVQRAELMPAEKAFSITEMVELLKNYD-FSKQRRLSFEYIVFKGLNDSQVYAKELL 271 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+L+G+ ++NLI F+ PG + +D + F + + G + IR+ RG DI AACG Sbjct: 272 KLLRGLDCRVNLIRFHAIPGVDLEGADMDTMTRFRDYLTSHGLFTTIRSSRGEDIFAACG 331 Query: 364 QLKS 367 L + Sbjct: 332 MLST 335 >gi|332880555|ref|ZP_08448229.1| 23S rRNA m2A2503 methyltransferase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681543|gb|EGJ54466.1| 23S rRNA m2A2503 methyltransferase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 344 Score = 229 bits (584), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 134/366 (36%), Positives = 200/366 (54%), Gaps = 29/366 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+GM EL+ +IG+P R Q+ +W+Y + + M++IS + R LLN Sbjct: 4 KIALLGMTLAELKAVAGEIGMPSFAAR----QMAEWLYGKKVASIDEMTNISAKNRRLLN 59 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + +++ VD + S DGT K+L R A GG VE TVYIP+ R TLCVSSQVGC Sbjct: 60 ERYTVGCAAPVDGQRSADGTVKYLYRTAA---GGYVE--TVYIPDGDRATLCVSSQVGCR 114 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q LTA +IL Q+ +P ++N+V M Sbjct: 115 MNCRFCMTGKQGFSGQLTAADILNQL------------------YSLPERD-TLTNVVFM 155 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 G GEPL N DNV ++ I + G ++S +RIT+ST G + R +E LA+SLH Sbjct: 156 GQGEPLDNLDNVLRATEILTADYGYAWSPKRITVSTVGLRKGLKRFLDESECHLAVSLHN 215 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 D R +L+P Y L ++ R Y ++ RR++FEY M +G+ND+P A L+++ Sbjct: 216 PFADQRALLMPAENSYGLREIVALLREYD-FTHQRRLSFEYTMFEGVNDTPAHAKELLRL 274 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L G+ ++NLI F+P PG + + ++ ++ F + + G S IR RG DI AACG L Sbjct: 275 LDGLECRMNLIRFHPVPGVDLKGTSEEGMLRFRDYLTGHGLFSTIRASRGQDIFAACGLL 334 Query: 366 KSLSKR 371 + ++ Sbjct: 335 STAKQQ 340 >gi|315635461|ref|ZP_07890727.1| cfr family radical SAM enzyme [Arcobacter butzleri JV22] gi|315480219|gb|EFU70886.1| cfr family radical SAM enzyme [Arcobacter butzleri JV22] Length = 360 Score = 229 bits (584), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 128/343 (37%), Positives = 195/343 (56%), Gaps = 24/343 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q++ W+Y + + M ++ +E+ L +++ I +IV ++ S DG+ K+L + Sbjct: 25 FRAKQVYNWLYKKYASSYDEMKNLPKELVEDLKENYPIDIMQIVKKEQSRDGSIKYLFKL 84 Query: 93 PARCIGGPVEI--------ETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTA 144 V + E I + T+C+SSQVGC + CSFC T VRNLT Sbjct: 85 RDNHTVEAVLLLMKDKKIDEDGQIVRSEKYTVCISSQVGCKVGCSFCLTAKGGFVRNLTV 144 Query: 145 EEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIA 204 E + Q++ + DI K NIV MGMGEPL NFDN K++ I Sbjct: 145 GEYIAQIV-------NIKRDNDI-------AENKALNIVYMGMGEPLDNFDNFTKAVEIF 190 Query: 205 SDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPL 263 S+ GL+ S+RR T+STSG I ++GE ++ + LAISLHAV ++LR+ L+P+N+ Y + Sbjct: 191 SELDGLAISRRRQTVSTSGIATKIKKLGEKDLQIQLAISLHAVDDELRSELIPMNKAYNI 250 Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPG 323 +I+A + +P + +++ FEY+++K NDS A L+ +L GI AK+NLI FNP+PG Sbjct: 251 ASIIEAVKAFP-VDTRKKVMFEYLVIKDKNDSIEAAKKLVSLLNGIQAKVNLIYFNPYPG 309 Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 Y +KD++ F + + + G IR +GLDI AACGQLK Sbjct: 310 TSYQRPQEKDMLKFKDFLNQKGVICTIRESKGLDISAACGQLK 352 >gi|293370817|ref|ZP_06617362.1| radical SAM enzyme, Cfr family [Bacteroides ovatus SD CMC 3f] gi|298481513|ref|ZP_06999705.1| radical SAM enzyme, Cfr family [Bacteroides sp. D22] gi|292634033|gb|EFF52577.1| radical SAM enzyme, Cfr family [Bacteroides ovatus SD CMC 3f] gi|295086976|emb|CBK68499.1| 23S rRNA m(2)A-2503 methyltransferase [Bacteroides xylanisolvens XB1A] gi|298272377|gb|EFI13946.1| radical SAM enzyme, Cfr family [Bacteroides sp. D22] Length = 344 Score = 229 bits (584), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 131/364 (35%), Positives = 199/364 (54%), Gaps = 29/364 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K L+GM EL+ ++G+P QI W+Y + + M+++S + R L Sbjct: 1 MSKYPLLGMTLVELQSLTKRLGMPG----FAAKQIASWLYEKKVASIDDMTNLSLKHREL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L Q++ + VDE S DGT K+L + +G +E+VYIP+ R TLCVSSQVG Sbjct: 57 LKQNYEVGAEAPVDEMRSVDGTVKYLYK-----VGENHFVESVYIPDDDRATLCVSSQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG Q NLTA +I+ Q+ +P K++N+V Sbjct: 112 CKMNCKFCMTGKQGYTANLTASQIINQI------------------HSLPERD-KLTNVV 152 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N D V K+L + + + G ++S +RITLST G + R EE LAISL Sbjct: 153 MMGMGEPLDNLDEVLKALELLTATYGYAWSPKRITLSTVGLRKGLQRFIEENDCHLAISL 212 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ R L+P + + + +++ ++Y S RR++FEY++ KG+NDS A L+ Sbjct: 213 HSPLTVQRAELMPAEKAFSITEMVELLKNYD-FSKQRRLSFEYIVFKGLNDSQVYAKELL 271 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+L+G+ ++NLI F+ PG + +D + F + + G + IR+ RG DI AACG Sbjct: 272 KLLRGLDCRVNLIRFHAIPGVDLEGADMDTMTRFRDYLTSHGLFTTIRSSRGEDIFAACG 331 Query: 364 QLKS 367 L + Sbjct: 332 MLST 335 >gi|153809258|ref|ZP_01961926.1| hypothetical protein BACCAC_03570 [Bacteroides caccae ATCC 43185] gi|149128028|gb|EDM19249.1| hypothetical protein BACCAC_03570 [Bacteroides caccae ATCC 43185] Length = 344 Score = 229 bits (584), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 133/364 (36%), Positives = 199/364 (54%), Gaps = 29/364 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K L+GM EL+ ++G+P QI W+Y + + M+++S + R L Sbjct: 1 MSKYPLLGMTLVELQSLAKRLGMPG----FAAKQIASWLYDKKVASIDEMTNLSLKYREL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L Q++ + VDE S DGT K+L + +G +E+VYIP+ R TLCVSSQVG Sbjct: 57 LKQNYEVGAEAPVDEMRSVDGTVKYLYK-----VGENHFVESVYIPDDDRATLCVSSQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG Q NLTA +I+ Q+ +P K++N+V Sbjct: 112 CKMNCKFCMTGKQGYKANLTASQIINQI------------------HSLPERD-KLTNVV 152 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N D V ++L I + G ++S +RITLST G + R EE LAISL Sbjct: 153 MMGMGEPLDNLDEVLQALEIMTADYGYAWSPKRITLSTVGLRKGLKRFIEESDCHLAISL 212 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ R+ L+P + Y + +++ ++Y S RR++FEY++ KG+NDS A L+ Sbjct: 213 HSPLAVQRSELMPAEKGYSITEMVELLKNYD-FSKQRRLSFEYIVFKGLNDSQVYAKELL 271 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+L+G+ +INLI F+ PG + +D + F + + G + IR+ RG DI AACG Sbjct: 272 KLLRGLDCRINLIRFHAIPGVDLEGADMDTMTRFRDYLTTHGLFTTIRSSRGEDIFAACG 331 Query: 364 QLKS 367 L + Sbjct: 332 MLST 335 >gi|333031476|ref|ZP_08459537.1| Ribosomal RNA large subunit methyltransferase N [Bacteroides coprosuis DSM 18011] gi|332742073|gb|EGJ72555.1| Ribosomal RNA large subunit methyltransferase N [Bacteroides coprosuis DSM 18011] Length = 344 Score = 229 bits (583), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 130/371 (35%), Positives = 197/371 (53%), Gaps = 29/371 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K+ L+GM EL+ + + G+P + QI W+Y + + + M+++S++ R L Sbjct: 3 MDKKPLLGMTLSELQVLVSQAGLP----KFTAKQIASWLYKKKVTNIDEMTNLSKKNRDL 58 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 LNQ +++ + S DGT K+L +G IE+VYIP++ R TLCVSSQVG Sbjct: 59 LNQEYTVGAANPIQAVKSVDGTIKYLF-----SVGDKNSIESVYIPDEDRATLCVSSQVG 113 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG Q NL+A +IL Q+ IP ++NIV Sbjct: 114 CKMNCLFCMTGKQGFSGNLSANQILNQI------------------QTIPE-SDTLTNIV 154 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MGMGEP+ N D V K L I + G +S +RIT+ST G R +E LA+S+ Sbjct: 155 FMGMGEPMDNLDEVLKVLEILTSDYGYKWSPKRITVSTVGVRKGFERFLQESDCHLAVSI 214 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H R L+P + P+ +++ R Y S RR++FEY+M KG+NDS A L+ Sbjct: 215 HTPIASQRKDLMPAEKGLPISEIVNILRDYD-FSKQRRLSFEYIMFKGVNDSISHAKKLL 273 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++L G+ ++NLI F+ P + SD + + F + + ++G + IR RG DI AACG Sbjct: 274 ELLDGLECRVNLIRFHAIPNVDLNGSDMETMTVFRDYLTKNGVFTTIRASRGEDIFAACG 333 Query: 364 QLKSLSKRIPK 374 L ++ K K Sbjct: 334 MLSTMEKNKNK 344 >gi|319401489|gb|EFV89699.1| radical SAM superfamily protein [Staphylococcus epidermidis FRI909] Length = 364 Score = 229 bits (583), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 126/371 (33%), Positives = 208/371 (56%), Gaps = 25/371 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +K+S+ + +E+++ L+ G + R QI++W+Y + + M+++S+E+R Sbjct: 16 FEKQSIYSLRYDEMQQWLIDHG----QQKFRAKQIFEWLYQKRVNTIDEMTNLSKELRQT 71 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L HF++ V ++ S DGT K+L + IETV + + ++CV++QVG Sbjct: 72 LKDHFAMTTLTTVVKQESKDGTIKFLFE-----LQDGYTIETVLMRHEYGNSVCVTTQVG 126 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C+FC + L RNL A EI+ QVL + L + ++S IV Sbjct: 127 CRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TNERVSQIV 172 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+D + L I +D L+ R IT+STSG +P I EE I + A+S Sbjct: 173 IMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVS 232 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LH +++R+ L+PINR Y ++ L++A R+Y +N RR+TFEY + G+ND A +L Sbjct: 233 LHGAKDEIRSRLMPINRAYNVDKLMEAIRYYQEKTN-RRVTFEYGLFGGVNDQLEHARDL 291 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++K + +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AAC Sbjct: 292 AHLIKDLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAAC 351 Query: 363 GQLKSLSKRIP 373 GQL++ +++ Sbjct: 352 GQLRAKERQVE 362 >gi|313159155|gb|EFR58530.1| 23S rRNA m2A2503 methyltransferase [Alistipes sp. HGB5] Length = 379 Score = 229 bits (583), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 129/363 (35%), Positives = 191/363 (52%), Gaps = 29/363 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 E+L G E+L ++G+P R Q+ +W+Y + + D MSDI+ R L + Sbjct: 41 ETLYGKTPEQLAAVCAELGMP----RFAAKQLARWLYAKHVEDPMRMSDIAAAHRAKLAE 96 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 F + S DGT+K+L R IE+ YIP+ R TLCVSSQ GC + Sbjct: 97 RFRPAFTPPARITESADGTKKYLYR-----TQQGAWIESAYIPDGERATLCVSSQAGCRM 151 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG Q L +LT EIL Q++ +P ++N+V MG Sbjct: 152 GCKFCATGRQGLQHSLTTAEILNQIV------------------SLPERD-SLTNVVFMG 192 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N DNV ++L I + G +S RITLST+G P + R + V LA+SLH Sbjct: 193 MGEPLDNTDNVLRALEIMTSEWGFGWSPTRITLSTAGVAPELQRFLDATKVHLAVSLHNP 252 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ R ++P+ R +P+ + R Y ++ RR++FEY+++ G+NDSPR L ++L Sbjct: 253 FHEERAAIMPVERAWPIAEVAAILRRY-DFTHQRRVSFEYIVMSGLNDSPRHIRELCRLL 311 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 GI +INLI F+ PG + D + ++ F + + G + IR RG DI AACG L Sbjct: 312 DGIKCRINLIRFHKIPGSPFFSPDDEAMIRFRDTLTAKGIQTTIRASRGEDIQAACGLLS 371 Query: 367 SLS 369 + + Sbjct: 372 TAA 374 >gi|294646654|ref|ZP_06724280.1| radical SAM enzyme, Cfr family [Bacteroides ovatus SD CC 2a] gi|292637993|gb|EFF56385.1| radical SAM enzyme, Cfr family [Bacteroides ovatus SD CC 2a] Length = 382 Score = 229 bits (583), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 131/364 (35%), Positives = 199/364 (54%), Gaps = 29/364 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K L+GM EL+ ++G+P QI W+Y + + M+++S + R L Sbjct: 39 MSKYPLLGMTLVELQSLTKRLGMPG----FAAKQIASWLYEKKVASIDDMTNLSLKHREL 94 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L Q++ + VDE S DGT K+L + +G +E+VYIP+ R TLCVSSQVG Sbjct: 95 LKQNYEVGAEAPVDEMRSVDGTVKYLYK-----VGENHFVESVYIPDDDRATLCVSSQVG 149 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG Q NLTA +I+ Q+ +P K++N+V Sbjct: 150 CKMNCKFCMTGKQGYTANLTASQIMNQI------------------HSLPERD-KLTNVV 190 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N D V K+L + + + G ++S +RITLST G + R EE LAISL Sbjct: 191 MMGMGEPLDNLDEVLKALELLTATYGYAWSPKRITLSTVGLRKGLQRFIEENDCHLAISL 250 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ R L+P + + + +++ ++Y S RR++FEY++ KG+NDS A L+ Sbjct: 251 HSPLTVQRAELMPAEKAFSITEMVELLKNYD-FSKQRRLSFEYIVFKGLNDSQVYAKELL 309 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+L+G+ ++NLI F+ PG + +D + F + + G + IR+ RG DI AACG Sbjct: 310 KLLRGLDCRVNLIRFHAIPGVDLEGADMDTMTRFRDYLTSHGLFTTIRSSRGEDIFAACG 369 Query: 364 QLKS 367 L + Sbjct: 370 MLST 373 >gi|225011596|ref|ZP_03702034.1| radical SAM enzyme, Cfr family [Flavobacteria bacterium MS024-2A] gi|225004099|gb|EEG42071.1| radical SAM enzyme, Cfr family [Flavobacteria bacterium MS024-2A] Length = 358 Score = 229 bits (583), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 130/362 (35%), Positives = 208/362 (57%), Gaps = 26/362 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ + + +EEL+E + G P + Q+++W++ +G+ DF+ M+++S R+LL+ Sbjct: 14 KKDIRALSKEELQEFFVSQGAPS----FKGGQVYQWLWQKGVHDFELMTNLSLTHRNLLD 69 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 HF I + I ++ S DGT K ++ + +E+V IP +R T CVSSQVGCS Sbjct: 70 AHFEIKHINIDFQQRSTDGTIKNAVKLHDNLV-----VESVLIPTSTRTTACVSSQVGCS 124 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC T K +RNL A+EI QV+ D + + R +SNIV M Sbjct: 125 LDCTFCATAALKRMRNLNADEIYDQVV-----------AMDQQSKLYHQ--RPLSNIVFM 171 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAISL 243 GMGEPL N++NV ++ +D+ L S RRITLSTSG +P + R +++ LA+SL Sbjct: 172 GMGEPLMNYNNVLAAIEKITDTEALGMSPRRITLSTSG-IPKLIRKMADDKVKFGLAVSL 230 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ ++R ++P +K+PL LI++ ++ + ++ITFEYV+ +G+ND D L+ Sbjct: 231 HSARQEVRERIMPFAKKFPLTELIESLEYWYAYTK-KQITFEYVVWEGVNDLKEDIQALV 289 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 + + IP+K+N+I +NP G +Q I + + ++ S R RG+DI AACG Sbjct: 290 GLCRRIPSKVNIIQYNPIDGSSMKQGNQTVIDAYIAALTKARISVTYRRSRGVDIDAACG 349 Query: 364 QL 365 QL Sbjct: 350 QL 351 >gi|253575779|ref|ZP_04853114.1| cfr family radical SAM enzyme [Paenibacillus sp. oral taxon 786 str. D14] gi|251844822|gb|EES72835.1| cfr family radical SAM enzyme [Paenibacillus sp. oral taxon 786 str. D14] Length = 348 Score = 229 bits (583), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 129/354 (36%), Positives = 199/354 (56%), Gaps = 25/354 (7%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 EEL+E + G P R QI+ W+YV+ + F M+++S+ +R L F+ + + Sbjct: 11 EELQEWAVSQGEPA----FRGGQIFDWLYVKRVSSFDEMTNLSKALRQKLADEFAFVTLQ 66 Query: 75 IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134 + + S DGT K+L + IETV + ++CV++QVGC + C+FC + Sbjct: 67 EITKLESKDGTVKFLF-----GLHDDHAIETVIMKHNYGNSICVTTQVGCKVGCTFCAST 121 Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194 L RNLT EI+ QV+ A+ +L + G ++S+IV+MG GEP N+ Sbjct: 122 LGGLKRNLTPGEIVAQVVQAQKIL--------------DAKGERVSSIVIMGTGEPFENY 167 Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNI 253 D K L I GL+ +R IT+STSG VPNI R +E + LAIS+HA ++ LR+ Sbjct: 168 DATMKFLRIMIHEKGLNIGQRHITVSTSGIVPNIYRFADENTQINLAISIHAPNDALRSK 227 Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313 L+P+NR++P + +++A R+Y RRITFEY ++ G+ND P A L ++K + + Sbjct: 228 LMPVNRRFPFDDVMEALRYYIA-KTGRRITFEYALIGGVNDQPEHAEELADVIKDMLCHV 286 Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 NLIP N P +Y+ + + DI F + G + IR +G DI AACGQL++ Sbjct: 287 NLIPVNYVPERKYVRTSRNDIFKFQRILADKGINVTIRREQGHDIAAACGQLRA 340 >gi|193215236|ref|YP_001996435.1| radical SAM enzyme, Cfr family [Chloroherpeton thalassium ATCC 35110] gi|254807164|sp|B3QS43|RLMN_CHLT3 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|193088713|gb|ACF13988.1| radical SAM enzyme, Cfr family [Chloroherpeton thalassium ATCC 35110] Length = 369 Score = 229 bits (583), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 142/356 (39%), Positives = 192/356 (53%), Gaps = 29/356 (8%) Query: 19 EALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII----YPE 74 EAL+ + R QI+ WIY G+ DF M ++S + LL+QHF++ + + Sbjct: 14 EALMALINSYGQPAFRAKQIFHWIYAHGVTDFAQMKNLSASFQTLLSQHFTVSSIQPHAD 73 Query: 75 IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS--RGTLCVSSQVGCSLTCSFCY 132 V +I+ + T K+L R + IE+V+IP S R TLC+SSQVGC+ C FC Sbjct: 74 TVSHEITPEQTVKFLFR-----LSDEQSIESVFIPSDSTSRNTLCISSQVGCAFACKFCA 128 Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192 TG +RNLT EIL QVL LGD G KI+N+V MGMGEPL Sbjct: 129 TGYMGFIRNLTIGEILDQVLWVNRWLGD-------------QRGGKITNVVFMGMGEPLA 175 Query: 193 NFDNVKKSLSIASD-SMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLAISLHAVSNDL 250 NFDN ++ I ++ S R+IT+ST GF+P I R + I LAISLH+ + Sbjct: 176 NFDNCLAAIRILTNPDYAFQISTRKITVSTVGFIPGIQRLIDTGINCKLAISLHSAHQAI 235 Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310 R L+PI ++Y L L Y + + ITFEY ++ INDS +DA+ L K KGI Sbjct: 236 REELIPIAKEYSLATLKAILTRY-NQAYKQPITFEYSLIHKINDSEQDAILLSKFCKGIN 294 Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTF-SECIKRSGYSSPIRTPRGLDILAACGQL 365 KINLI +N +YL S + F +CI+ G + +R RG DI AACGQL Sbjct: 295 CKINLIDYNSVDNIDYLPSPEGHKQAFIRKCIEH-GLTVTVRKSRGADIQAACGQL 349 >gi|160887188|ref|ZP_02068191.1| hypothetical protein BACOVA_05204 [Bacteroides ovatus ATCC 8483] gi|156107599|gb|EDO09344.1| hypothetical protein BACOVA_05204 [Bacteroides ovatus ATCC 8483] Length = 344 Score = 229 bits (583), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 131/364 (35%), Positives = 199/364 (54%), Gaps = 29/364 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K L+GM EL+ ++G+P QI W+Y + + M+++S + R L Sbjct: 1 MSKYPLLGMTLVELQSLTKRLGMPG----FAAKQIASWLYEKKVASIDDMTNLSLKHREL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L Q++ + VDE S DGT K+L + +G +E+VYIP+ R TLCVSSQVG Sbjct: 57 LKQNYEVGAEAPVDEMRSVDGTVKYLYK-----VGENHFVESVYIPDDDRATLCVSSQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG Q NLTA +I+ Q+ +P K++N+V Sbjct: 112 CKMNCKFCMTGKQGYTANLTASQIINQI------------------HSLPERD-KLTNVV 152 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N D V K+L + + + G ++S +RITLST G + R EE LAISL Sbjct: 153 MMGMGEPLDNLDEVLKALELLTATYGYAWSPKRITLSTVGLRKGLQRFIEENDCHLAISL 212 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ R L+P + + + +++ ++Y S RR++FEY++ KG+NDS A L+ Sbjct: 213 HSPLTVQRAELMPAEKAFSITEMVELLKNYD-FSKQRRLSFEYIVFKGLNDSQVYAKELL 271 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+L+G+ ++NLI F+ PG + +D + F + + G + IR+ RG DI AACG Sbjct: 272 KLLRGLDCRVNLIRFHAIPGVDLEGADMDTMTRFRDNLTSHGLFTTIRSSRGEDIFAACG 331 Query: 364 QLKS 367 L + Sbjct: 332 MLST 335 >gi|317129257|ref|YP_004095539.1| radical SAM enzyme, Cfr family [Bacillus cellulosilyticus DSM 2522] gi|315474205|gb|ADU30808.1| radical SAM enzyme, Cfr family [Bacillus cellulosilyticus DSM 2522] Length = 362 Score = 229 bits (583), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 132/364 (36%), Positives = 200/364 (54%), Gaps = 25/364 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K S+ + EEL + + IG + R QI+ W+YV+ + F+ M+++S+++RH L Sbjct: 14 EKPSIYSLTYEELIQWIEGIG----ESKFRAKQIFDWLYVKRVTSFEEMTNLSKDLRHNL 69 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +SI + + S DGT K+L IETV + + ++CV++QVGC Sbjct: 70 ANEYSITTLSTITNQTSKDGTIKFLFELQ-----DGYSIETVVMRHEYGNSVCVTTQVGC 124 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 L C+FC + L RNL A EI+ QVL A+ L D ++ ++V+ Sbjct: 125 RLGCTFCASTLGGLKRNLEAGEIVAQVLKAQQFLDD--------------TDERVDSVVV 170 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+D + + L + GL+ R IT+STSG VP I + +E + + AISL Sbjct: 171 MGIGEPFDNYDELIRFLKTINHDNGLNIGARHITVSTSGVVPKIYQFADENMQINFAISL 230 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA + R L+PINR YP++ L+DA R+Y +N RRITFEY + G+NDS DA L Sbjct: 231 HAAKTETRTRLMPINRAYPIDKLMDAIRYYIKKTN-RRITFEYGLFGGVNDSIEDAELLA 289 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++K I +NLIP N Y+ + ++ I F +K + IR +G DI AACG Sbjct: 290 DLIKDIKCHVNLIPVNDVLERNYVRTPKEQIFAFERALKNRDINVTIRREQGHDIDAACG 349 Query: 364 QLKS 367 QL++ Sbjct: 350 QLRA 353 >gi|284047696|ref|YP_003398035.1| radical SAM enzyme, Cfr family [Acidaminococcus fermentans DSM 20731] gi|283951917|gb|ADB46720.1| radical SAM enzyme, Cfr family [Acidaminococcus fermentans DSM 20731] Length = 353 Score = 228 bits (582), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 137/366 (37%), Positives = 200/366 (54%), Gaps = 28/366 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ ++G+ EEL+ L +G+ + R Q+++W+Y + DF MS++S++ R L Sbjct: 3 KKEIMGLTLEELQTELAGLGMK----KFRAEQVFRWLYEKAATDFSQMSNLSKDARQQLA 58 Query: 66 QHFSIIYPEI--VDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 ++I ++ + E S DG T K LL + +ETV + ++C+SSQV Sbjct: 59 DRYTIATAQVKVLKEYRSRDGLTHKVLLE-----LTDGATVETVLMHHDYGYSVCLSSQV 113 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC++ C+FC +G VRNLTA EIL Q+ +S G PG G ++S I Sbjct: 114 GCAMNCAFCASGLHGFVRNLTAAEILAQLYFFQS--GLQPG------------GERVSRI 159 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAI 241 V+MG GEP+ N DNV K+L I G R +T+ST G VP I + + + LAI Sbjct: 160 VVMGSGEPMLNLDNVLKALDILHSDRGQCIGYRNMTVSTCGVVPGIQELTAQGRNINLAI 219 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH S +LRN L+PINRKYP +I A Y SN R++ +EY++L GIND P DA N Sbjct: 220 SLHGASQELRNRLMPINRKYPFPEVIQAADAYEK-SNGRQVMYEYILLAGINDRPEDARN 278 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L L+ INLIP NP P + + + F + +K+ + +R G DI AA Sbjct: 279 LADALEHKECVINLIPANPVPEKGFERPSDRAVDRFFQMLKKRRLNVTVRKEMGKDINAA 338 Query: 362 CGQLKS 367 CGQL++ Sbjct: 339 CGQLRA 344 >gi|283953675|ref|ZP_06371206.1| putative radical SAM domain protein [Campylobacter jejuni subsp. jejuni 414] gi|283794716|gb|EFC33454.1| putative radical SAM domain protein [Campylobacter jejuni subsp. jejuni 414] Length = 356 Score = 228 bits (582), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 137/348 (39%), Positives = 197/348 (56%), Gaps = 34/348 (9%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI++WIY + +F MS + +++R L Q+F + V + S D + K+L Sbjct: 23 FRVKQIYQWIYQKYANNFSDMSSLPKDLRLELAQNFHFSPVKCVKNEQSKDRSIKYLFEL 82 Query: 93 PARCIGGPVEIETVYIPEK-------------SRGTLCVSSQVGCSLTCSFCYTGTQKLV 139 I G + +E+V +P K +R T+CVSSQVGC +CSFC T L Sbjct: 83 ----IDG-LRVESVLLPMKEEKIDEKGKRISHARYTICVSSQVGCKSSCSFCLTAKGGLK 137 Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199 RNL+A EI+ Q+L + IP R NIV MGMGEPL N NV K Sbjct: 138 RNLSAGEIVGQILWIKKQNN------------IPYERR--VNIVYMGMGEPLDNLKNVSK 183 Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPIN 258 ++ I + + GL+ S RR T+STSG I +G+ +G++LAISLHAV+++LR L+PIN Sbjct: 184 AVKILAQNDGLAISPRRQTISTSGLAKQIKELGQMNLGILLAISLHAVNDELRTELMPIN 243 Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318 + Y + ++DA R +P + +R+ FEY+++ GIND A L+K+L GI AK+NLI F Sbjct: 244 KAYNIAAIMDAVREFP-IVQRKRVMFEYLLIDGINDKLEHAKELVKLLNGIKAKVNLILF 302 Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 NP G Y ++ + F + + G + IR +GLDI AACGQLK Sbjct: 303 NPHEGSIYKRPSLENAIKFQDLLSSKGVTCTIRESKGLDISAACGQLK 350 >gi|24379004|ref|NP_720959.1| ribosomal RNA large subunit methyltransferase N [Streptococcus mutans UA159] gi|81588375|sp|Q8DVG8|RLMN_STRMU RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|24376896|gb|AAN58265.1|AE014897_11 conserved hypothetical protein [Streptococcus mutans UA159] Length = 361 Score = 228 bits (582), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 137/368 (37%), Positives = 211/368 (57%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R +L + I + R +QIW W+Y + ++ F+ M+++S++ LLN Sbjct: 2 KPSIYSLTRNDL----IAWTIEHGEKKFRATQIWDWLYRKRVQSFEEMTNLSKDFIALLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 ++F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 ENFLVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI Q++L + D G G +IS++V Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEITAQIMLVQKYF-------DERGQ-----GERISHVV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+DNV K L +D GL+ R IT+STSG I E + V LA+S Sbjct: 159 VMGIGEPFDNYDNVLKFLRTINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ INR +PLE L A +Y +N RR+TFEY+ML G+NDSP +A L Sbjct: 219 LHAPNNELRSSIMRINRSFPLEKLFAAIEYYIETTN-RRVTFEYIMLNGVNDSPENAQEL 277 Query: 303 IKILKGIP--AKINLIPFNP-WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 + K I + +NLIP+NP +Y S ++ + F + +K++G + +R G DI Sbjct: 278 ADLTKKIRKLSYVNLIPYNPVTEHDQYSRSPKERVDAFYDVLKKNGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|332702335|ref|ZP_08422423.1| Ribosomal RNA large subunit methyltransferase N [Desulfovibrio africanus str. Walvis Bay] gi|332552484|gb|EGJ49528.1| Ribosomal RNA large subunit methyltransferase N [Desulfovibrio africanus str. Walvis Bay] Length = 362 Score = 228 bits (582), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 128/338 (37%), Positives = 188/338 (55%), Gaps = 15/338 (4%) Query: 29 RHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKW 88 R R R Q+W+W++ +G+ DF+ MS++S+ +R L +H I P I + S DGT K+ Sbjct: 23 REPRFRAEQVWQWMWQKGVSDFEEMSNVSKALRGKLAEHAVIRPPTIDTVRESDDGTVKF 82 Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 LLR + IETV +P ++ T C+S+QVGC++ C+FC TGT L RNL EI Sbjct: 83 LLRLADGAL-----IETVLLPSRTHYTQCLSTQVGCAMGCAFCSTGTMGLARNLAHSEIC 137 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 QVLL R L + E R + N+V MGMGEPL N+D + KSL D Sbjct: 138 GQVLLGRKWLEQKNSQDKGE--------RSLRNLVFMGMGEPLMNYDTLVKSLHTLRDDK 189 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVP-INRKYPLEMLI 267 FS RR+T+ST+G + + LA+SLHA + +LR ++P R +PL L+ Sbjct: 190 AFGFSSRRMTVSTAGVPGRMTELVTSGLARLAVSLHAPTQELRERIMPRAARMHPLPALM 249 Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL 327 + + P L R TFEY+++ G+ND+ + A L+++L + AKINLI NP + Sbjct: 250 EELKKLP-LRPQERTTFEYILIGGLNDTQQHARELVRLLSHVRAKINLIACNPAKDSPFA 308 Query: 328 CSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + I F + ++ G + +R +G DI AACGQL Sbjct: 309 APTMEAIEAFQQVLRDKGLVAMLRKSKGQDIEAACGQL 346 >gi|157736328|ref|YP_001489011.1| hypothetical protein Abu_0057 [Arcobacter butzleri RM4018] gi|205829660|sp|A8EQW8|RLMN_ARCB4 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|157698182|gb|ABV66342.1| conserved hypothetical protein, radical SAM enzyme, Cfr family [Arcobacter butzleri RM4018] Length = 360 Score = 228 bits (582), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 128/343 (37%), Positives = 194/343 (56%), Gaps = 24/343 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q++ W+Y + + M ++ +E+ L +++ I +IV ++ S DG+ K+L + Sbjct: 25 FRAKQVYNWLYKKYASSYDEMKNLPKELVEDLKENYPIDIMQIVKKEQSRDGSIKYLFKL 84 Query: 93 PARCIGGPVEI--------ETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTA 144 V + E I + T+C+SSQVGC + CSFC T VRNLT Sbjct: 85 RDNHTVEAVLLLMKDKKIDEDGQIVRSEKYTVCISSQVGCKVGCSFCLTAKGGFVRNLTV 144 Query: 145 EEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIA 204 E + Q++ + DI K NIV MGMGEPL NFDN K++ I Sbjct: 145 GEYIAQIV-------NIKRDNDI-------AENKALNIVYMGMGEPLDNFDNFTKAVEIF 190 Query: 205 SDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPL 263 S+ GL+ S+RR T+STSG I ++GE ++ + LAISLHAV ++LR+ L+P+N+ Y + Sbjct: 191 SELDGLAISRRRQTVSTSGIATKIKKLGEKDLQIQLAISLHAVDDELRSELIPMNKAYNI 250 Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPG 323 +I A + +P + +++ FEY+++K NDS A L+ +L GI AK+NLI FNP+PG Sbjct: 251 ASIIQAVKAFP-VDTRKKVMFEYLVIKDKNDSIEAAKKLVSLLNGIQAKVNLIYFNPYPG 309 Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 Y +KD++ F + + + G IR +GLDI AACGQLK Sbjct: 310 TSYQRPQEKDMLKFKDFLNQKGVICTIRESKGLDISAACGQLK 352 >gi|160939809|ref|ZP_02087156.1| hypothetical protein CLOBOL_04700 [Clostridium bolteae ATCC BAA-613] gi|158437243|gb|EDP15008.1| hypothetical protein CLOBOL_04700 [Clostridium bolteae ATCC BAA-613] Length = 362 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 132/374 (35%), Positives = 210/374 (56%), Gaps = 29/374 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ + M EE+ + +G R Q++ W++V+ F MS +S +R L Sbjct: 10 KKDIKSMTLEEVTAQMAALG----EKSFRAKQLYDWMHVKLAEGFDDMSSLSIPLRQKLK 65 Query: 66 QHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +++S+ ++VDE++S DGTRK+L G V IE+V++ ++C+SSQVGC Sbjct: 66 ENYSLTCLKMVDERVSQVDGTRKYLFGLE----DGHV-IESVWMQYHHGNSVCISSQVGC 120 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC + L RNL E+L Q+ +S+ G+ ++SN+V+ Sbjct: 121 RMGCRFCASTLDGLERNLRPSEMLEQIYRIQSITGE-----------------RVSNVVV 163 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG GEP+ N+DNV + L + S GL+ S+R +T+ST G VP I + EE + V LA+SL Sbjct: 164 MGSGEPMDNYDNVIRFLRLVSHEKGLNISQRSLTISTCGIVPGIRKFAEEGLAVTLALSL 223 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA ++++R L+P+ Y L+ +++AC HY RR+TFEY +++G+ND+ +A L Sbjct: 224 HAPNDEVRKTLMPVANSYKLQDVLEAC-HYYYEKTGRRLTFEYSLVRGVNDNLDEARALA 282 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K++K +NLIP NP +Y+ S QK I F ++++G + IR G DI ACG Sbjct: 283 KLIKDQHGHVNLIPVNPIKERDYVQSGQKAIQDFKNLLEKNGINVTIRREMGRDIGGACG 342 Query: 364 QLKSLSKRIPKVPR 377 QL+ K VP+ Sbjct: 343 QLRRSYKEASAVPQ 356 >gi|312866070|ref|ZP_07726291.1| 23S rRNA m2A2503 methyltransferase [Streptococcus downei F0415] gi|311098474|gb|EFQ56697.1| 23S rRNA m2A2503 methyltransferase [Streptococcus downei F0415] Length = 375 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 136/368 (36%), Positives = 209/368 (56%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R++L + L+ G + R SQIW W+Y + ++ F M++IS++ LL Sbjct: 14 KPSIYSLTRDQLIDWSLEHG----QKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLK 69 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 ++F + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 70 ENFDFNPLKQRIVQE--SADGTIKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 122 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI Q++L + L D G ++S++V Sbjct: 123 CNIGCTFCASGLIKKQRDLNNGEITAQIMLVQKYLDD------------QGNGERVSHVV 170 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+DNV + L +D GL+ R IT+STSG I E I V LA+S Sbjct: 171 VMGIGEPFDNYDNVIRFLRTINDDNGLAIGARHITVSTSGLAHKIREFANEGIQVNLAVS 230 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ INR +PLE L DA +Y +N RR+TFEY+ML +ND P +A L Sbjct: 231 LHAPNNELRSSIMRINRSFPLEKLFDAIEYYIQTTN-RRVTFEYIMLNEVNDYPENAQEL 289 Query: 303 IKILKGIP--AKINLIPFNP-WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 + K I + +NLIP+N +Y S ++ + F + +K++G + +R G DI Sbjct: 290 ADLTKSIRKLSYVNLIPYNAVSEHDQYSRSTKERVDAFYDVLKKNGVNCVVRQEHGTDID 349 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 350 AACGQLRS 357 >gi|224541738|ref|ZP_03682277.1| hypothetical protein CATMIT_00910 [Catenibacterium mitsuokai DSM 15897] gi|224525342|gb|EEF94447.1| hypothetical protein CATMIT_00910 [Catenibacterium mitsuokai DSM 15897] Length = 343 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 132/362 (36%), Positives = 207/362 (57%), Gaps = 28/362 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +S+ + E+L+E L +G R QI++WIYV+ + DF M+++S+E++ L+ Sbjct: 3 KSIYDLTLEQLKEELKAMGQKP----FRAKQIYEWIYVKNVYDFHQMTNLSKELQETLSN 58 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 HFS I +++++ DGT K+LL GG IETV + + +LCV+SQ+GC++ Sbjct: 59 HFSDALLTIKEKQVARDGTTKYLLELED---GGL--IETVLMIQTYGRSLCVTSQLGCNM 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 CSFC +G K RNLT+ EI+ QVL V+ + +++++V+MG Sbjct: 114 GCSFCASGLLKKQRNLTSGEIVKQVL-----------------TVMNDLKERVTHVVVMG 156 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 GEP N+D V + ++ GL+ R +T+ST G +P I R E I V LAISLHA Sbjct: 157 TGEPFDNYDEVMNFIYTVNEPHGLAIGARHLTISTCGLIPGIERFSHEPIQVNLAISLHA 216 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++RN L+PIN++Y ++ L DA + Y +N RR+T EY++LK +ND + A L Sbjct: 217 PNDEIRNELMPINKRYNMDDLRDAIKTYIERTN-RRVTLEYILLKDVNDDIKYARQLAHY 275 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G+ +NLIP+NP Y S I F + + R + +R G DI ACGQL Sbjct: 276 LRGLNVYVNLIPYNPVDEHGYKQSLGHTITAFKDELIRLHINCTLRKEHGRDIDGACGQL 335 Query: 366 KS 367 ++ Sbjct: 336 RA 337 >gi|255007877|ref|ZP_05280003.1| hypothetical protein Bfra3_01983 [Bacteroides fragilis 3_1_12] gi|313145585|ref|ZP_07807778.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313134352|gb|EFR51712.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 344 Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 133/362 (36%), Positives = 196/362 (54%), Gaps = 29/362 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K L+GM EL+ +G+P QI W+Y + + M+++S + R LL Sbjct: 3 KYPLLGMTLTELQSVTKDLGMPA----FAAKQIASWLYDKKVTSIDEMTNLSLKHRELLK 58 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + VD S DGT K+L R +G +E VYIP++ R TLCVSSQVGC Sbjct: 59 GEYDLGVVAPVDAMHSIDGTVKYLYR-----VGENHFVEAVYIPDEDRATLCVSSQVGCK 113 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q +LTA +IL Q+ +P K++N+VMM Sbjct: 114 MNCKFCMTGKQGFTASLTANQILNQI------------------AALPERD-KLTNVVMM 154 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N D V K+L I + S G +S +RITLS+ G + R EE LAISLH+ Sbjct: 155 GMGEPLDNLDEVLKALHILTASYGYGWSPKRITLSSVGLRKGLQRFIEESECHLAISLHS 214 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 R+ L+P R + ++ ++D ++Y S RR++FEY++ KG+NDS A L+K+ Sbjct: 215 PFPSQRSELMPAERAFSIKEMVDLLKNYD-FSKQRRLSFEYIVFKGVNDSLIYAKELVKL 273 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G+ ++NLI F+ PG + +D + ++ F + + G + IR RG DI AACG L Sbjct: 274 LRGLDCRMNLIRFHAIPGVDLEGADMETMMAFRDYLTSHGLFTTIRASRGEDIFAACGML 333 Query: 366 KS 367 + Sbjct: 334 ST 335 >gi|86131691|ref|ZP_01050288.1| radical SAM superfamily protein [Dokdonia donghaensis MED134] gi|85817513|gb|EAQ38687.1| radical SAM superfamily protein [Dokdonia donghaensis MED134] Length = 346 Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 133/355 (37%), Positives = 205/355 (57%), Gaps = 22/355 (6%) Query: 13 MREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIY 72 +R+ +E L + Q R +Q+++W++ +G DF M++IS+E R LL++HF I + Sbjct: 8 IRKLTKEDLRAFFVDQGDKAFRGNQVYEWLWQKGAHDFVDMTNISKETRILLDEHFVINH 67 Query: 73 PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132 + + S DGT K ++ + + +E+V IP KSR T CVSSQVGCSL C FC Sbjct: 68 IRVDQMQRSSDGTIKNAVK-----LHDGLTVESVLIPTKSRTTACVSSQVGCSLNCKFCA 122 Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192 T K +RNL +EI+ QV++ I+ R +SNIV MGMGEPL Sbjct: 123 TARLKRMRNLNPDEIVDQVVV-------------IDRQSKLYHDRPLSNIVFMGMGEPLM 169 Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAISLHAVSNDL 250 N++NV K++ +D GL S +RIT+STSG VP I + EE+ LA+SLH+ +D+ Sbjct: 170 NYNNVIKAIDKITDPEGLGMSPKRITVSTSG-VPKIIKKMADEEVKFNLAVSLHSALDDV 228 Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310 R ++P N + PL L +A ++ +RIT+EYV+ GIND D L+ K +P Sbjct: 229 RTEIMPFNEQMPLADLKEALIYWYE-KTGKRITYEYVVWDGINDRQIDIDALLDFCKAVP 287 Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +K+N+I +NP ++ ++ + I + + ++ +G + +R RG DI AACGQL Sbjct: 288 SKVNIIEYNPIDDGQFQQANPQAIDRYVDVLEANGVTVTVRRSRGKDIDAACGQL 342 >gi|290580974|ref|YP_003485366.1| hypothetical protein SmuNN2025_1448 [Streptococcus mutans NN2025] gi|254997873|dbj|BAH88474.1| hypothetical protein [Streptococcus mutans NN2025] Length = 361 Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 137/368 (37%), Positives = 211/368 (57%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R +L + I + R +QIW W+Y + ++ F+ M+++S++ LLN Sbjct: 2 KPSIYSLTRNDL----IAWTIEHGEKKFRATQIWDWLYRKRVQSFEEMTNLSKDFIALLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 ++F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 ENFLVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI Q++L + D G G +IS++V Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEITAQIMLVQKYF-------DERGQ-----GERISHVV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+DNV K L +D GL+ R IT+STSG I E + V LAIS Sbjct: 159 VMGIGEPFDNYDNVLKFLRTINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAIS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ INR +PLE L A +Y +N RR+TFEY+ML G+ND+P +A L Sbjct: 219 LHAPNNELRSSIMRINRSFPLEKLFAAIEYYIETTN-RRVTFEYIMLNGVNDNPENAQEL 277 Query: 303 IKILKGIP--AKINLIPFNP-WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 + K I + +NLIP+NP +Y S ++ + F + +K++G + +R G DI Sbjct: 278 ADLTKKIRKLSYVNLIPYNPVTEHDQYSRSPKERVDAFYDVLKKNGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|313203965|ref|YP_004042622.1| 23S rRNA m(2)a-2503 methyltransferase [Paludibacter propionicigenes WB4] gi|312443281|gb|ADQ79637.1| 23S rRNA m(2)A-2503 methyltransferase [Paludibacter propionicigenes WB4] Length = 345 Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 134/367 (36%), Positives = 202/367 (55%), Gaps = 29/367 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K +L+G +EL++ + ++G+P QI +W+Y + + M++IS + R L Sbjct: 1 MDKIALVGKNIDELKDIVSELGMPA----FTAKQISEWLYKKRVFSLDEMTNISAKNRAL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L + + V S DGT+K+L R GG IE+VYIP++ R TLCVSSQVG Sbjct: 57 LAAKYDVGRSLPVQAVESTDGTKKYLFRTE----GGHF-IESVYIPDEDRATLCVSSQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG Q LT EIL Q+ M IP ++N+V Sbjct: 112 CKMGCMFCMTGKQSFTAQLTTTEILNQI------------------MSIPE-AETLTNLV 152 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MGMGEP N + +SL I + G +S RRIT+S+ G +P + E LAISL Sbjct: 153 FMGMGEPFDNTLAMLRSLEILTADYGYGWSPRRITVSSIGLIPGMKVFLERSNCHLAISL 212 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ ++ R L+PI + +P+ ++D R + S+ RR++FEY++ G+NDS R A+ L+ Sbjct: 213 HSPFSEERLKLMPIEKSFPIAKVLDEIRKH-DFSHQRRVSFEYILFDGVNDSMRHAVELV 271 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+L+GI ++NLI F+ PG + S + + F + + +G +S IR RG DI AACG Sbjct: 272 KLLRGIDCRVNLIRFHAIPGIDLKSSTPEKMTFFRDYLTSNGVTSTIRRSRGEDIFAACG 331 Query: 364 QLKSLSK 370 L +L K Sbjct: 332 MLSTLEK 338 >gi|224476327|ref|YP_002633933.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus carnosus subsp. carnosus TM300] gi|254807211|sp|B9DPM7|RLMN_STACT RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|222420934|emb|CAL27748.1| putative Radical SAM family protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 364 Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 126/371 (33%), Positives = 213/371 (57%), Gaps = 25/371 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 K+S+ + EE+++ L++ G + R QI++W+Y + + M+++S+++R + Sbjct: 16 FDKQSIYSLRYEEMQDWLVEHG----QQKFRAKQIFQWLYEKRVDSIDEMTNLSKDLREV 71 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +F++ E V ++ S DGT K+L + IETV + + ++CV++QVG Sbjct: 72 LKDNFTMTTLETVVKQESRDGTIKFLFE-----LQDGYTIETVLMRHEYGNSVCVTTQVG 126 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C+FC + L RNL A EI+ QVL + V+ + ++S IV Sbjct: 127 CRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQK--------------VLDATDERVSQIV 172 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+D + L I + GL+ R IT+STSG +P I EE I + A+S Sbjct: 173 IMGIGEPFENYDEMMDFLKIVNYDNGLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVS 232 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA ++++R+ L+PINR Y ++ L++A ++Y +N RRITFEY + G+ND A L Sbjct: 233 LHAANDEIRSKLMPINRAYSIDKLMEAIQYYQEKTN-RRITFEYGLFGGVNDQLTHAREL 291 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +++ + +NLIP N P Y+ + ++DI F + +KR G ++ IR +G DI AAC Sbjct: 292 AHLIQNLNCHVNLIPVNHVPERNYVKTPKEDIFKFEKELKRLGINATIRREQGSDIDAAC 351 Query: 363 GQLKSLSKRIP 373 GQL++ +++ Sbjct: 352 GQLRAKERQVE 362 >gi|261405801|ref|YP_003242042.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus sp. Y412MC10] gi|329926635|ref|ZP_08281048.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF5] gi|261282264|gb|ACX64235.1| radical SAM enzyme, Cfr family [Paenibacillus sp. Y412MC10] gi|328939176|gb|EGG35539.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF5] Length = 346 Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 129/354 (36%), Positives = 199/354 (56%), Gaps = 25/354 (7%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 EEL+ + G P R +QI+ W+YV+ + DF M+++S+E+R L Q FS + Sbjct: 11 EELQAWAQENGEPA----FRGTQIYDWLYVKRVNDFAEMTNLSKELRAKLEQEFSFVTLT 66 Query: 75 IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134 + + S DGT K+L + IETV + ++CV++QVGC + C+FC + Sbjct: 67 EITKLESKDGTVKFLF-----GLHDDHAIETVIMRHNYGNSICVTTQVGCRIGCTFCAST 121 Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194 L RNLT+ EI+ QV+ A+ +L G ++S+IV+MG GEP N+ Sbjct: 122 LGGLKRNLTSGEIVAQVVQAQKIL--------------DKTGERVSSIVIMGSGEPFENY 167 Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNI 253 + K L GL+ +R IT+STSG VPNI + EE + LAIS+HA ++ LR+ Sbjct: 168 EATMKFLRTMIHEKGLNIGQRHITVSTSGIVPNIYKFTEEDTQINLAISIHAPNDKLRSK 227 Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313 L+P+NR++P + +I++ R+Y RRITFEY ++ G+ND A L ++K + + Sbjct: 228 LMPVNRRFPFDDVIESLRYYQA-KTGRRITFEYALIGGVNDQVEHAEELADVIKDMNCFV 286 Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 NLIP N P +Y+ + + DI F + G + IR +G DI AACGQL++ Sbjct: 287 NLIPVNHVPERKYVRTSRNDIFKFQRALADKGVNVTIRREQGHDIAAACGQLRA 340 >gi|262038981|ref|ZP_06012317.1| radical SAM enzyme, Cfr family [Leptotrichia goodfellowii F0264] gi|261747005|gb|EEY34508.1| radical SAM enzyme, Cfr family [Leptotrichia goodfellowii F0264] Length = 357 Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 132/364 (36%), Positives = 201/364 (55%), Gaps = 30/364 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 ++G E+L+ G+ + +Q++ W++ + + DF ++IS+ R +L + Sbjct: 11 DILGFNLEKLQNIFADTGLK----KFNANQVYDWLHNKLVFDFDKFTNISKHDREILKKK 66 Query: 68 FSIIYPEIV--DEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 F++ P++V +IS D T K+L R + IE+V I K+R TLCVSSQ+GC Sbjct: 67 FAL--PKLVHRSHQISEDRDTEKFLFELKDRRL-----IESVLISHKNRHTLCVSSQIGC 119 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC T T K RNL A EIL+Q ++ L + K+ N+V Sbjct: 120 LIGCDFCATATMKYERNLDASEILMQFYHIQNYLKE--------------KNEKLGNVVF 165 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243 MGMGEP N+DNV +S++I + G +FSKR T+STSG VP I + E E + LAISL Sbjct: 166 MGMGEPFLNYDNVIESINILNSDKGQNFSKRNFTISTSGIVPVINKFTEDENQINLAISL 225 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+V +D+R+ L+PIN+ Y ++ L +A +Y + RITFEY+++ +N +DA L+ Sbjct: 226 HSVKDDIRSELMPINKTYKVKELKEALINYQKKT-KNRITFEYILIDDLNCETKDAFELM 284 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 L +NLIP+NP G Y +K F +K + +R +G DI AACG Sbjct: 285 NFLHSFSCLVNLIPYNPVAGKPYSTPSKKKQREFYTLLKDKNVNVTLRETKGQDIAAACG 344 Query: 364 QLKS 367 QLK+ Sbjct: 345 QLKA 348 >gi|323440993|gb|EGA98700.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus O11] Length = 364 Score = 228 bits (580), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 127/371 (34%), Positives = 208/371 (56%), Gaps = 25/371 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 K+S+ + +E++ L++ G + R QI++W+Y + + M+++S+++R L Sbjct: 16 FDKQSIYSLRFDEMQNWLVEQG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKDLRQL 71 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +F++ V ++ S DGT K+L + IETV + ++CV++QVG Sbjct: 72 LKDNFTVTSLTTVVKQESKDGTIKFLFE-----LQDGYTIETVLMRHDYGNSVCVTTQVG 126 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C+FC + L RNL A EI+ QVL + L + ++S IV Sbjct: 127 CRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKAL--------------DATEERVSQIV 172 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+D + L I +D L+ R IT+STSG +P I +E I + A+S Sbjct: 173 IMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFADEDIQINFAVS 232 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +++R+ L+PINR Y +E LI+A ++Y +N RR+TFEY + G+ND A L Sbjct: 233 LHAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTN-RRVTFEYGLFGGVNDQLEHAREL 291 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++KG+ +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AAC Sbjct: 292 AHLIKGLNCHVNLIPVNHVPERNYVKTAKNDIFKFEKELKRLGINATIRREQGSDIDAAC 351 Query: 363 GQLKSLSKRIP 373 GQL++ +++ Sbjct: 352 GQLRAKERQVE 362 >gi|255525649|ref|ZP_05392582.1| radical SAM enzyme, Cfr family [Clostridium carboxidivorans P7] gi|296185409|ref|ZP_06853819.1| radical SAM enzyme, Cfr family [Clostridium carboxidivorans P7] gi|255510635|gb|EET86942.1| radical SAM enzyme, Cfr family [Clostridium carboxidivorans P7] gi|296050243|gb|EFG89667.1| radical SAM enzyme, Cfr family [Clostridium carboxidivorans P7] Length = 349 Score = 228 bits (580), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 133/362 (36%), Positives = 205/362 (56%), Gaps = 29/362 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++++ + EEL++ + G + R Q++ WIY DF+ M ++ + + L + Sbjct: 2 DNILDLSLEELKQWMKDNGESE----FRAKQVFHWIYKNNQWDFEKMDNLPKGTKEKLIK 57 Query: 67 HFSIIYPEIVD-EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F I P+I++ K D T K+L + I IETV + K ++CVS+QVGC Sbjct: 58 CFEIDIPQIIEVYKSENDDTHKFLYEYKDGNI-----IETVVMKYKHGNSICVSTQVGCR 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC + + +VRNL++ EI+ Q+L A+ +G +ISNIV+M Sbjct: 113 MGCKFCASTVEGMVRNLSSGEIIAQILKAQ-----------------EKIGERISNIVLM 155 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244 G GEPL N++NV K LS+ + L+ +R ITLST G VP I + + + + LAISLH Sbjct: 156 GSGEPLDNYENVIKFLSLVNAEYCLNIGQRHITLSTCGIVPKIKELADKDYQITLAISLH 215 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +++LR ++PI KY + +I+AC++Y +N RRITFEY ++K +NDS + A L+K Sbjct: 216 AANDELRKTMMPIANKYSINEIIEACKYYISKTN-RRITFEYALVKDVNDSAQSAEELVK 274 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGI +NLIP N + S +I FS + + G + IR G DI AACGQ Sbjct: 275 LLKGILCHVNLIPVNKVRENNFEKSPTNNIKNFSNILIKKGIETTIRREMGSDINAACGQ 334 Query: 365 LK 366 L+ Sbjct: 335 LR 336 >gi|313905219|ref|ZP_07838587.1| radical SAM enzyme, Cfr family [Eubacterium cellulosolvens 6] gi|313469972|gb|EFR65306.1| radical SAM enzyme, Cfr family [Eubacterium cellulosolvens 6] Length = 351 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 130/357 (36%), Positives = 205/357 (57%), Gaps = 29/357 (8%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 M+ EL+EAL ++G R Q+++W++ + + ++ M+++S+ +R L + + Sbjct: 10 MLPGELKEALAQMGEKP----FRAGQVFEWLHDKRVEKYEEMTNLSKVLREKLADSYPLT 65 Query: 72 YPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130 ++V E+IS DGTRK+L P + IE+V++ ++C+SSQVGC + C F Sbjct: 66 TLQVVREEISKVDGTRKYLFALPDHNV-----IESVWMKYHHGNSVCISSQVGCRMGCRF 120 Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 C + LVR+LTA E+L QV + + G+ ++SNIV+MG GEP Sbjct: 121 CASTLGGLVRSLTASEMLEQVYQIQRVTGE-----------------RVSNIVIMGSGEP 163 Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSND 249 L N++NV + + + S GL+ S+R IT+ST G VPNI R+ EE+ V LAISLHA +++ Sbjct: 164 LENYENVVRFVQLVSHEKGLNLSQRNITISTCGIVPNIRRLAEEELSVTLAISLHAPTDE 223 Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309 R L+PI KY + ++DACR+Y RR+TFEY + G NDS DA L ++L + Sbjct: 224 KRKKLMPIANKYSIAEIMDACRYYFD-KTGRRLTFEYALTGGQNDSDEDAAELARLLAHL 282 Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +NLIP NP ++ ++ ++ F ++ G + IR G DI ACGQL+ Sbjct: 283 NCHVNLIPVNPVRERSFIRPNRTAVLAFQNKLENFGINVTIRREMGSDINGACGQLR 339 >gi|288904758|ref|YP_003429979.1| hypothetical protein GALLO_0545 [Streptococcus gallolyticus UCN34] gi|306830757|ref|ZP_07463921.1| cfr family radical SAM enzyme [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977679|ref|YP_004287395.1| ribosomal RNA large subunit methyltransferase N [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288731483|emb|CBI13037.1| conserved hypothetical protein [Streptococcus gallolyticus UCN34] gi|304427104|gb|EFM30212.1| cfr family radical SAM enzyme [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177607|emb|CBZ47651.1| ribosomal RNA large subunit methyltransferase N [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 368 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 134/368 (36%), Positives = 216/368 (58%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ G+ R+EL E ++ G + R +QIW W+Y + ++ F+ M++IS++ +LN Sbjct: 9 KPSIYGLTRDELIEWAIEHG----EKKFRATQIWDWLYRKRVQSFEEMTNISKDFIAVLN 64 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 ++F + + +V E + DGT K+L P + IETV + + ++CV+SQVG Sbjct: 65 ENFCVNPLKQRVVQE--ASDGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTSQVG 117 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ CSFC +G K R+LT+ EI Q+++ + D G ++ ++S++V Sbjct: 118 CNMGCSFCASGLIKKQRDLTSGEITSQIMMVQKYF-DERGQDE-----------RVSHVV 165 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N++NV + L +D GL+ R IT+STSG I E + V LA+S Sbjct: 166 VMGIGEPFDNYNNVLRFLRTINDDNGLAIGARHITVSTSGLAHKIRDFAHESLQVNLAVS 225 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ +NR +PLE L A +Y +N RR+TFEY+ML +ND P +A L Sbjct: 226 LHAPNNELRSQIMRVNRSFPLEKLFAAIEYYVETTN-RRVTFEYIMLNEVNDFPENAQEL 284 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 + K I + INLIP+NP +Y S ++ + F + +K++G + +R G DI Sbjct: 285 ADLTKKIRKLSYINLIPYNPVSEHDQYSRSSKERVAAFYDVLKKNGVNCVVRQEHGTDID 344 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 345 AACGQLRS 352 >gi|297544781|ref|YP_003677083.1| Cfr family radical SAM protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842556|gb|ADH61072.1| radical SAM enzyme, Cfr family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 342 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 138/361 (38%), Positives = 201/361 (55%), Gaps = 30/361 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L M EE+EE + IG R R QI+KWIY + I DF M+DIS+ +R L + Sbjct: 3 NLKNMTLEEMEEFFVNIG----ESRYRAKQIYKWIYGKKITDFDKMTDISKNLRSKLKEI 58 Query: 68 FSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I ++ ++S D T K+L + I IE V I + T CVS+QVGC++ Sbjct: 59 AYISQLKVEARRVSEIDNTVKYLFLLEDKNI-----IEGVAIKYRFGNTACVSTQVGCNM 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 CSFC + VR+L A E++ QV M I S KISNIV+MG Sbjct: 114 RCSFCASAIGGKVRDLKASEMVDQV------------------MSIDSDYGKISNIVLMG 155 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 GEP N++ V K + I ++ GL R IT+ST G +P I + +E + V L+ISLHA Sbjct: 156 SGEPFDNYEEVMKFIKIVNNPYGLGIGSRHITISTCGIIPKIYQFADEKLQVNLSISLHA 215 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +++LR L+PIN+ YPLE L+ AC++Y + RRITFEY +++G+ND A L+ + Sbjct: 216 PNDELRTQLMPINKAYPLEELMKACKYYIEKTR-RRITFEYSLIEGVNDKKEHAYQLVDL 274 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G+ +NLIP N + + + ++ F + I+ +G S +R G DI AACGQL Sbjct: 275 LQGMLCHVNLIPINYVKEIGFKKAANEKVMMFKKIIENAGISCTVRRELGSDIEAACGQL 334 Query: 366 K 366 + Sbjct: 335 R 335 >gi|289548506|ref|YP_003473494.1| radical SAM enzyme, Cfr family [Thermocrinis albus DSM 14484] gi|289182123|gb|ADC89367.1| radical SAM enzyme, Cfr family [Thermocrinis albus DSM 14484] Length = 347 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 132/365 (36%), Positives = 209/365 (57%), Gaps = 35/365 (9%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 ++G EEL E ++ +G+ R R QI W+Y +G+ DF M++IS+ R +L + F Sbjct: 4 ILGYTLEELREEVVSLGLE----RYRADQILNWVYKKGVTDFSLMTNISKRDRQVLAERF 59 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 S +++D K+ + K+L + +ETV I E+ TLCVSSQVGC++ C Sbjct: 60 SFHTLQMID-KVEAPDSVKYLFK-----TEDGHTVETVLIKERDHLTLCVSSQVGCAVGC 113 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 SFC T L+RNL EEI+ Q + + D P ++I N+V MGMG Sbjct: 114 SFCATARDGLLRNLRTEEIIDQFIQVQK---DSP--------------QRIRNVVFMGMG 156 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM----LAISLH 244 EPL N++NV+K++ + GL SKRR+++STSG + + ++ ++ VM LA+S++ Sbjct: 157 EPLANYENVRKAVKVMISPWGLDLSKRRVSVSTSGIISQLKKMAQD-PVMRELNLAVSIN 215 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A S +LR ++PI++ PL L++ YP + RRI EYV+++ +ND P AL L + Sbjct: 216 APSQELRERIMPISKTNPLHELMEVLYQYPYPPD-RRIMLEYVLIEKVNDEPEHALQLAQ 274 Query: 305 ILKGIPA--KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LKG P K+NLIP+NP P Y + + F + + +G S+ +R +G+ + AC Sbjct: 275 LLKGNPKKFKVNLIPYNPDPELPYRRPPLERVYRFQKILWDNGISTFVRFSKGVQVFGAC 334 Query: 363 GQLKS 367 GQL+S Sbjct: 335 GQLRS 339 >gi|220903723|ref|YP_002479035.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868022|gb|ACL48357.1| radical SAM enzyme, Cfr family [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 386 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 133/345 (38%), Positives = 189/345 (54%), Gaps = 22/345 (6%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 + R Q+W+WI+ R RDF M++IS+ R LL I++PE+ + S DGT K+LLR Sbjct: 46 KFRAMQLWQWIWQRMARDFDTMTNISRPCRELLAAKACIVWPEVSAVEESRDGTTKFLLR 105 Query: 92 FPARCIGGPVEIETVYIPEKSR-----GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEE 146 +IETV IP SR T C+S QVGC++ C+FC TG RN+T E Sbjct: 106 LE-----DGAQIETVLIPSDSREGVRRWTQCLSCQVGCTMGCTFCSTGQMGFERNMTMGE 160 Query: 147 ILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD 206 IL Q+L+AR LGD I + N+V MGMGEPL N V +SL ++ Sbjct: 161 ILGQILVAREHLGDTRLHWPI-----------LRNLVFMGMGEPLLNLKEVMRSLESLNN 209 Query: 207 SMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEML 266 GL FS RRIT+ST G + +GE LA+SLHA + +R ++P ++ L L Sbjct: 210 DKGLGFSPRRITVSTCGIEKGLKELGESGLAFLAVSLHAPNQAVRERIMPKAARWRLNDL 269 Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 + A + YP L ITFEY+ML G+NDS A L ++ + K+N+I +N G Y Sbjct: 270 MAALKSYP-LKTREHITFEYLMLGGVNDSLEHARELAPLVSAVKGKLNIIVYNAAEGSPY 328 Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 ++ I+ F + + ++ IR +G DI AACGQLK+ ++ Sbjct: 329 QAPSEERILAFEKYLWSKDITAIIRKSKGQDIKAACGQLKAARQK 373 >gi|222153431|ref|YP_002562608.1| ribosomal RNA large subunit methyltransferase N [Streptococcus uberis 0140J] gi|254807218|sp|B9DUW7|RLMN_STRU0 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|222114244|emb|CAR42840.1| radical SAM superfamily protein [Streptococcus uberis 0140J] Length = 361 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 136/368 (36%), Positives = 210/368 (57%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+EL L+ G + R +QIW W+Y + ++ F+ M++IS++ LLN Sbjct: 2 KPSIYSLTRDELIAWALENG----QKKFRATQIWDWLYKKRVQSFEEMTNISKDFIALLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 +HF + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 EHFCVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI Q++L + D G ++ ++S++V Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEITAQIMLVQKYF-DERGQDE-----------RVSHVV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+DNV K L +D GL+ R IT+STSG I E + V LA+S Sbjct: 159 VMGIGEPFDNYDNVMKFLRTINDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ INR +PLE L A +Y +N RR+TFEY+ML +ND A L Sbjct: 219 LHAPNNELRSSIMRINRSFPLEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQAQEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 + K I + +NLIP+NP +Y S ++ + F + +K++G + +R G DI Sbjct: 278 ADLTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVAAFYDVLKKNGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|297208138|ref|ZP_06924569.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus ATCC 51811] gi|296887381|gb|EFH26283.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus ATCC 51811] Length = 364 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 128/371 (34%), Positives = 209/371 (56%), Gaps = 25/371 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 K+S+ + +E++ L++ G + R QI++W+Y + + M+++S+++R L Sbjct: 16 FDKQSIYSLRFDEMQNWLVEQG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKDLRQL 71 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +F++ V ++ S DGT K+L + IETV + ++CV++QVG Sbjct: 72 LKDNFTVTTLTTVVKQESKDGTIKFLFE-----LQDGYTIETVLMRHDYGNSVCVTTQVG 126 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C+FC + L RNL A EI+ QVL + L + ++S IV Sbjct: 127 CRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKAL--------------DATEERVSQIV 172 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+D + L I +D L+ R IT+STSG +P I +E I + A+S Sbjct: 173 IMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFADEDIQINFAVS 232 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +++R+ L+PINR Y +E LI+A ++Y +N RR+TFEY + G+ND A L Sbjct: 233 LHAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTN-RRVTFEYGLFGGVNDQLEHAREL 291 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++KG+ +NLIP N P Y+ + + DI F + +KR G ++ IR +GLDI AAC Sbjct: 292 AHLIKGLNCHVNLIPVNHVPERNYVKTAKNDIFKFEKELKRLGINATIRREQGLDIDAAC 351 Query: 363 GQLKSLSKRIP 373 GQL++ +++ Sbjct: 352 GQLRAKERQVE 362 >gi|291514720|emb|CBK63930.1| 23S rRNA m(2)A-2503 methyltransferase [Alistipes shahii WAL 8301] Length = 342 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 138/365 (37%), Positives = 198/365 (54%), Gaps = 33/365 (9%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +ESL G ++L ++G+P R QI +W+YVR D M+DI+ R L Sbjct: 3 HQESLYGKTPDQLAALCGELGMP----RFAARQIARWLYVRHTEDPLRMTDIAAAHRQRL 58 Query: 65 NQHFS--IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + FS + PE V E S DGT+K+L R + G +E+ YIP+ R TLCVSSQ Sbjct: 59 AEWFSPALSAPERVTE--SADGTKKYLFR----TLEGHY-VESAYIPDGERATLCVSSQA 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG Q L ++LTA EIL Q + +P K++N+ Sbjct: 112 GCRMGCRFCATGRQGLQQSLTAAEILNQAV------------------SLPERD-KLTNL 152 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 V MGMGEPL N D V ++L I + G +S RITLST+G VP + R + V LA+S Sbjct: 153 VFMGMGEPLDNTDEVLRALEIITAEWGFGWSPTRITLSTAGVVPELRRFLDATKVHLAVS 212 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LH ++ R ++P+ R +P+ + R Y ++ RR++FEY+++ G+NDSPR L Sbjct: 213 LHNPFHEERMEIMPVERAWPIAEVAAILREY-DFTHQRRVSFEYIVMSGLNDSPRHIREL 271 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++L GI +INLI F+ P Y + +V F + + G + IR RG DI AAC Sbjct: 272 TRLLNGIKCRINLIRFHRIPDSPYFSPGDEAMVRFRDALTARGIQTTIRASRGEDIQAAC 331 Query: 363 GQLKS 367 G L + Sbjct: 332 GLLST 336 >gi|239626555|ref|ZP_04669586.1| radical SAM enzyme [Clostridiales bacterium 1_7_47_FAA] gi|239516701|gb|EEQ56567.1| radical SAM enzyme [Clostridiales bacterium 1_7_47FAA] Length = 354 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 129/363 (35%), Positives = 206/363 (56%), Gaps = 29/363 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 ++ + M EE+ E + +G R QI+ WI+V+ F GMS +S+E+R L Sbjct: 10 RKDIKSMTLEEVTEEMAALGEKP----FRAKQIYDWIHVKLAGSFDGMSSLSKELRQKLK 65 Query: 66 QHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 ++S+ I +E+IS DGTRK+L C+ IE+V++ ++C+SSQVGC Sbjct: 66 DNYSLTCLSITEERISQVDGTRKYLF-----CLEDGNIIESVWMQYHHGNSVCISSQVGC 120 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC + L RNL E+L Q+ + G+++SN+V+ Sbjct: 121 RMGCRFCASTLDGLERNLRPSEMLDQIY-----------------RIQAHTGQRVSNVVV 163 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG GEP N+DNV + L + S GL+ S+R +T+ST G VP I + +E + V LA+SL Sbjct: 164 MGSGEPFDNYDNVIRFLRLISHEKGLNISQRNLTVSTCGIVPGILQFAQEGLAVTLALSL 223 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA ++++R L+PI +Y L+ +++AC HY RR+TFEY +++G+ND+ +A L Sbjct: 224 HAPNDEVRKTLMPIANRYKLKDVLEAC-HYYYEKTGRRLTFEYSLVQGVNDNLDEARALS 282 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +++K +NLIP NP +Y+ S +K I F + ++++G + IR G DI ACG Sbjct: 283 RLIKDQHGHVNLIPVNPIKERDYVQSGRKAIADFKDLLEKNGINVTIRREMGRDIGGACG 342 Query: 364 QLK 366 QL+ Sbjct: 343 QLR 345 >gi|153855358|ref|ZP_01996507.1| hypothetical protein DORLON_02521 [Dorea longicatena DSM 13814] gi|149752178|gb|EDM62109.1| hypothetical protein DORLON_02521 [Dorea longicatena DSM 13814] Length = 356 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 130/365 (35%), Positives = 206/365 (56%), Gaps = 29/365 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K+ + +EL+E +L IG R+ QI++W++V+ DF M+++S+ +R Sbjct: 1 MSKKDICSYNYDELKEEMLVIG----EKAFRSKQIYEWLHVKLADDFDEMTNLSKALREK 56 Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L +++ I +++D +IS D T K+L + +E+V + ++C+SSQV Sbjct: 57 LKKNYEIRKVKMIDHQISKEDPTEKFLFELEDGNM-----VESVLMKYNYGNSVCISSQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC + LVR+L E+L Q+ + + G+ ++SN+ Sbjct: 112 GCRMGCRFCASTIGGLVRSLEPSEMLRQIYHIQKITGE-----------------RVSNV 154 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 V+MG GEPL N+DN K + + SD GL+ S+R IT ST G VPN+ R+ EE + + LA+ Sbjct: 155 VVMGTGEPLDNYDNFVKFIHMLSDEHGLNISQRNITASTCGIVPNMRRLAEEGLQITLAL 214 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH S + R L+P+ KY L ++DAC +Y + RRITFEY ++ G+ND P D Sbjct: 215 SLHGSSQEKRKKLMPVANKYDLSEVLDACDYYFDKT-GRRITFEYSLVAGVNDQPDDIRE 273 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ILKG +NLIP NP ++ D+K+ + F ++++G + IR RG DI A Sbjct: 274 LTTILKGRNCHLNLIPVNPIKERDFKKPDRKNAMEFKNKLEKNGINVTIRRERGSDIDGA 333 Query: 362 CGQLK 366 CGQL+ Sbjct: 334 CGQLR 338 >gi|70726698|ref|YP_253612.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus haemolyticus JCSC1435] gi|123776132|sp|Q4L5R9|RLMN_STAHJ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|68447422|dbj|BAE05006.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 364 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 125/371 (33%), Positives = 210/371 (56%), Gaps = 25/371 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +K+S+ + +E++E L++ G + R QI++W+Y + + M+++S+++R + Sbjct: 16 FEKQSIYSLRYDEMQEWLVEHG----QQKFRAKQIFEWLYQKRVDSIDDMTNLSKDLRQV 71 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +F++ V ++ S DGT K+L + IETV + ++CV++QVG Sbjct: 72 LKDNFAMTTLTTVVKQESKDGTIKFLFE-----LQDGYTIETVLMRHDYGNSVCVTTQVG 126 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C+FC + L RNL A EI+ QVL + L + ++S IV Sbjct: 127 CRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKAL--------------DATDERVSQIV 172 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+D + L I +D L+ R IT+STSG +P I EE I + A+S Sbjct: 173 IMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVS 232 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +++R+ L+PINR Y ++ L++A ++Y +N RR+TFEY + G+ND A +L Sbjct: 233 LHAAKDEIRSKLMPINRAYHVDKLMEAIKYYQEKTN-RRVTFEYGLFGGVNDQLEHARDL 291 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++K + +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AAC Sbjct: 292 AHLIKDLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAAC 351 Query: 363 GQLKSLSKRIP 373 GQL++ +++ Sbjct: 352 GQLRAKERQVE 362 >gi|73662863|ref|YP_301644.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123775339|sp|Q49WZ9|RLMN_STAS1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|72495378|dbj|BAE18699.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 364 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 126/371 (33%), Positives = 212/371 (57%), Gaps = 25/371 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +K+S+ + +E+++ L++ G + R QI++W+Y + + D M+++S+E+R + Sbjct: 16 FEKQSIYSLRYDEMQDWLVQNG----QQKFRAKQIFEWLYEKRVDDIDDMTNLSKELREV 71 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +F++ V ++ S DGT K+L + IETV + + ++CV++QVG Sbjct: 72 LKDNFTMTTMTTVVKQESKDGTIKFLFE-----LQDGYTIETVLMRHEYGNSVCVTTQVG 126 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C+FC + L RNL A EI+ QVL + L + ++S IV Sbjct: 127 CRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TEERVSQIV 172 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+D + L I +D GL+ R IT+STSG +P I +E I + A+S Sbjct: 173 IMGIGEPFENYDEMMDFLKIVNDDNGLNIGARHITVSTSGIIPRIYDFADEDIQINFAVS 232 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LH ++++R+ L+PINR Y +E L++A +Y +N RRITFEY + G+ND A L Sbjct: 233 LHGANDEIRSRLMPINRAYNVEKLMEAIHYYQEKTN-RRITFEYGLFGGVNDQIEHAREL 291 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +++ + +NLIP N P Y+ + ++DI F + +KR G ++ IR +G DI AAC Sbjct: 292 AHLIQELNCHVNLIPVNHVPERNYVKTPKEDIFKFEKELKRLGINATIRREQGADIDAAC 351 Query: 363 GQLKSLSKRIP 373 GQL++ +++ Sbjct: 352 GQLRAKERKVE 362 >gi|320527283|ref|ZP_08028468.1| radical SAM enzyme, Cfr family [Solobacterium moorei F0204] gi|320132307|gb|EFW24852.1| radical SAM enzyme, Cfr family [Solobacterium moorei F0204] Length = 346 Score = 227 bits (578), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 119/339 (35%), Positives = 198/339 (58%), Gaps = 21/339 (6%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93 R Q+++W+Y + + FQ M+D+ + L Q +SI + + +++ DGT K+L + Sbjct: 25 RAKQLFQWLYRKRVDSFQEMTDMPASLLEELAQEYSIEPVKEITRQVARDGTTKYLFQ-- 82 Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153 + +ETV + +LCV+SQ+GC++ C+FC +G K R+LTA EI+ QV+ Sbjct: 83 ---LADGSSVETVLMHFHFGESLCVTSQLGCNMGCTFCASGLLKKQRDLTAGEIVGQVMF 139 Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213 + L +G+++ N+V+MG GEP N+DNV + I + +GL+ Sbjct: 140 VQKEL--------------DKIGKRVDNVVIMGTGEPFDNYDNVMRFCEIINSDLGLAIG 185 Query: 214 KRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 R IT+ST G VP I + LAISLHA +++LR L+PI++ YPL++L+DA Sbjct: 186 ARHITISTCGIVPRIKDFAKGHYQYNLAISLHAPNDELRRKLMPIDQAYPLDVLMDALHE 245 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y N RRITFEY++L G+ND+ A+ L +++G+ A +NLIP+N Y+ +++K Sbjct: 246 YSE-GNNRRITFEYILLHGVNDTDAHAIQLANLIRGMNAYVNLIPYNQVDENGYVSTNEK 304 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 + F + + + G + +R+ G DI AACGQL++ ++ Sbjct: 305 VALHFYDVLMKHGVKATLRSKHGDDIDAACGQLRAKHEK 343 >gi|225156281|ref|ZP_03724759.1| radical SAM enzyme, Cfr family [Opitutaceae bacterium TAV2] gi|224803013|gb|EEG21258.1| radical SAM enzyme, Cfr family [Opitutaceae bacterium TAV2] Length = 367 Score = 227 bits (578), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 133/345 (38%), Positives = 186/345 (53%), Gaps = 12/345 (3%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDG-TRKWLLR 91 + +++W ++Y+ D + MSD+ +R L S + E S DG TRK+LL Sbjct: 28 VHAARLWAYLYLEDTDDIRAMSDLPARMRDRLLAETSAARLPVACETHSSDGFTRKYLL- 86 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 + EIETV + K R T CVSSQVGC++ C FC TG R+LTA EI+ Q Sbjct: 87 ----ALSDGREIETVLMRYKGRVTACVSSQVGCAMGCVFCATGQMGFTRHLTAGEIVAQA 142 Query: 152 L----LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207 L + R D P + ++ NIV+MGMGEPL N+D V +++ I D Sbjct: 143 LHVDRVLRRTADDAPALAEPGNASPHHRHERLRNIVLMGMGEPLHNYDAVMRAIDILRDG 202 Query: 208 MGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEML 266 GL+ R+ITLST G VP I R+ +E V LA+SLH + R LVP R +PL+ L Sbjct: 203 NGLALGARKITLSTVGVVPGIIRLADEHNPVHLAVSLHGATQAERAALVPAARAWPLDAL 262 Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 ++ACR+Y RRI FE+ +++G ND P A + ++L+G+ A++NLIP NP G Sbjct: 263 MEACRYYV-QKQQRRIFFEWTLIEGKNDGPDQARAVGRLLRGMQAQVNLIPLNPTSGYAG 321 Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 F + G S IR RG+DI A CGQL + S+R Sbjct: 322 EPGRADAAKRFQAVLAEHGLPSTIRQRRGIDIGAGCGQLATESRR 366 >gi|312910636|ref|ZP_07769477.1| radical SAM enzyme, Cfr family [Enterococcus faecalis DAPTO 516] gi|311289012|gb|EFQ67568.1| radical SAM enzyme, Cfr family [Enterococcus faecalis DAPTO 516] Length = 360 Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 132/368 (35%), Positives = 216/368 (58%), Gaps = 26/368 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++KES+ G+ RE+L + L G + R +Q+W+W+Y + + F MS+IS+ + L Sbjct: 1 MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNISKSLMTL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L ++FS+ + V + + DGT K+L P + + IETV + ++ ++CV++QVG Sbjct: 57 LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+LTA EI+ Q++ + D G ++ ++S++V Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYF-DERGLDE-----------RVSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+ NV L +D GL+ R IT+STSG VP I + + V LAIS Sbjct: 160 VMGIGEPFDNYANVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N++R ++ INR +P+E L+ A Y +N RR+TFEY+ML +ND P A L Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKTN-RRVTFEYIMLSQVNDRPEHAQQL 278 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 +L+ + +NLIP+NP +Y S ++ ++ F + +K++G + IR G DI Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338 Query: 360 AACGQLKS 367 AA GQ++S Sbjct: 339 AAFGQIRS 346 >gi|226313314|ref|YP_002773208.1| ribosomal RNA large subunit methyltransferase N [Brevibacillus brevis NBRC 100599] gi|226096262|dbj|BAH44704.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 356 Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 134/360 (37%), Positives = 206/360 (57%), Gaps = 25/360 (6%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 + + ++E++E L+ G R QI+ W+YV+ + F+ MS++S+E+R L F Sbjct: 13 IYSLTQDEMKEWLVSAGDKA----FRAQQIFDWLYVKRVSSFEEMSNLSKELREKLADTF 68 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 + + + + S DGT K+L + + G IETV + ++CV++QVGC + C Sbjct: 69 RMEPLKEITHQESQDGTIKFLFQL----VDGHA-IETVIMRHNYGNSICVTTQVGCRIGC 123 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 +FC + L RNL A EI+ QVL A+ L D EG ++S++V+MG+G Sbjct: 124 TFCASTLGGLKRNLDAGEIVSQVLTAQRRL-------DAEG-------ERVSHVVVMGIG 169 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVS 247 EP NF+++ LS+ +D+ GL+ R IT+STSG VP I E G V LAISLHA + Sbjct: 170 EPFENFESLMAFLSVINDNRGLNIGARHITVSTSGIVPKIYEFAERGGQVNLAISLHAPN 229 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 +LR+ L+PINR +PL L++AC HY RRI+FEY + G ND P A L +++ Sbjct: 230 TELRSQLMPINRGFPLAKLMEACHHYIN-KTGRRISFEYGLFGGKNDQPEHAEELAELIG 288 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 + +NLIP N P +Y+ + + +I F ++ G + IR +G DI AACGQL++ Sbjct: 289 DMLCHVNLIPVNYVPERDYVRTPRNEIFQFKRILEEKGINVTIRREQGSDIAAACGQLRA 348 >gi|283769598|ref|ZP_06342494.1| radical SAM enzyme, Cfr family [Bulleidia extructa W1219] gi|283103866|gb|EFC05252.1| radical SAM enzyme, Cfr family [Bulleidia extructa W1219] Length = 348 Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 131/366 (35%), Positives = 206/366 (56%), Gaps = 25/366 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +++ + +LEE +L++G + R Q++ W+Y + + F+ M+D+ L Sbjct: 2 QTIYDLTLHQLEELVLELG----QKKYRAKQLFTWLYRKRVLSFEEMTDLPTSFIEELKS 57 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 HF I+ + V ++S DGTRK+L + IETV + +LCV+SQ+GC++ Sbjct: 58 HFIIMPVKEVMRQVSKDGTRKYLF-----SLEDGSSIETVLMHFNFGESLCVTSQLGCNM 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC +G K R+L+ EIL Q++ + L D E + +ISNIV+MG Sbjct: 113 GCTFCASGLLKKQRDLSQGEILGQLMYVQKEL-------DSENL-------RISNIVVMG 158 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245 GEP N+D+V A+ +GL R IT+ST G VP I + LAISLHA Sbjct: 159 TGEPFDNYDHVLGFCKTANQDIGLGIGARHITISTCGIVPKIREFSKSHYQYNLAISLHA 218 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + +LR+ L+PIN +YPL L+D+ + Y SN RRITFEY++L G+NDS + A+ L + Sbjct: 219 PNQELRDKLMPINHRYPLSELMDSLKEYSE-SNHRRITFEYILLHGVNDSDQHAIELAHL 277 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 ++G+ A +NLIP+N Y +D K + F + + + G + +R G DI AACGQL Sbjct: 278 IRGMNAYVNLIPYNKVDEKGYESTDDKTALHFYDVLMKHGVKATLRQKHGDDIDAACGQL 337 Query: 366 KSLSKR 371 ++ ++ Sbjct: 338 RAKHEK 343 >gi|315224773|ref|ZP_07866595.1| cfr family radical SAM enzyme [Capnocytophaga ochracea F0287] gi|314945266|gb|EFS97293.1| cfr family radical SAM enzyme [Capnocytophaga ochracea F0287] Length = 350 Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 128/334 (38%), Positives = 194/334 (58%), Gaps = 20/334 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R +Q+++W++ +G+ F+ M+ + + R +L++HFSI + ++ + S DGT K +R Sbjct: 27 FRGNQVYEWLWQKGVHTFEEMTSLPKATREMLSEHFSINHIKVDVMQRSNDGTIKNAVRL 86 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + +E+V IP +R T CVSSQVGCSL CSFC T K +RNL +EI QV Sbjct: 87 HDGLL-----VESVLIPTDTRTTACVSSQVGCSLNCSFCATARLKRMRNLLPDEIFDQVK 141 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 + I+ GR +SNIV MGMGEPL N++NV K++ + GL Sbjct: 142 V-------------IDEQSRAFFGRPLSNIVFMGMGEPLMNYNNVLKAIDKITSPEGLGM 188 Query: 213 SKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S +RITLSTSG I ++ + E+ LA+SLH+ + +R ++P N ++PLE L +A Sbjct: 189 SPKRITLSTSGIPKLIKKMADDEVKFKLAVSLHSAISSVRTGIMPFNEQFPLEELREALA 248 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 ++ + RIT+EYV+ KGIND +D LIK K P+K+NLI +NP + +D Sbjct: 249 YWYQKTK-NRITYEYVVWKGINDQKKDVEALIKFCKFAPSKVNLIEYNPIDDGAFQQADP 307 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 K + + ++ +G + +R RG DI AACGQL Sbjct: 308 KALELYQTMLEEAGITVTVRHSRGKDIDAACGQL 341 >gi|256819328|ref|YP_003140607.1| radical SAM enzyme, Cfr family [Capnocytophaga ochracea DSM 7271] gi|256580911|gb|ACU92046.1| radical SAM enzyme, Cfr family [Capnocytophaga ochracea DSM 7271] Length = 350 Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 128/334 (38%), Positives = 194/334 (58%), Gaps = 20/334 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R +Q+++W++ +G+ F+ M+ + + R +L++HFSI + ++ + S DGT K +R Sbjct: 27 FRGNQVYEWLWQKGVHTFEEMTSLPKATREMLSEHFSINHIKVDVMQRSNDGTIKNAVRL 86 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + +E+V IP +R T CVSSQVGCSL CSFC T K +RNL +EI QV Sbjct: 87 HDGLL-----VESVLIPTDTRTTACVSSQVGCSLNCSFCATARLKRMRNLLPDEIFDQVK 141 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 + I+ GR +SNIV MGMGEPL N++NV K++ + GL Sbjct: 142 V-------------IDEQSRAFFGRPLSNIVFMGMGEPLMNYNNVLKAIDKITSPEGLGM 188 Query: 213 SKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S +RITLSTSG I ++ + E+ LA+SLH+ + +R ++P N ++PLE L +A Sbjct: 189 SPKRITLSTSGIPKLIKKMADDEVKFKLAVSLHSAISSVRTGIMPFNEQFPLEELREALA 248 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 ++ + RIT+EYV+ KGIND +D LIK K P+K+NLI +NP + +D Sbjct: 249 YWYQKTK-NRITYEYVVWKGINDQKKDVEALIKFCKFAPSKVNLIEYNPIDDGAFQQADP 307 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 K + + ++ +G + +R RG DI AACGQL Sbjct: 308 KALELYQTMLEEAGITVTVRHSRGKDIDAACGQL 341 >gi|225847963|ref|YP_002728126.1| ribosomal RNA large subunit methyltransferase N [Sulfurihydrogenibium azorense Az-Fu1] gi|225644008|gb|ACN99058.1| radical SAM enzyme, Cfr family [Sulfurihydrogenibium azorense Az-Fu1] Length = 353 Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 138/365 (37%), Positives = 208/365 (56%), Gaps = 29/365 (7%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L + +ELE +++ G P + R QI KW+Y + + F M+D+S+E+R L + Sbjct: 3 NLKNLNFKELENFVVENGWP----KFRAKQIAKWLYNKKVESFDQMTDLSKEIRQTLKEK 58 Query: 68 FSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I +++ + S DG+ K+L + + IETV I EK+ TLCVS+QVGC++ Sbjct: 59 CEINSLKLLTYQQSKIDGSIKFLWQ-----LKDGNTIETVLINEKNHKTLCVSTQVGCAV 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FCYT L+RNL EI+ Q + + LGD +ISNIV MG Sbjct: 114 GCKFCYTTKDGLIRNLETAEIVDQYINVQRFLGD-------------EEENRISNIVYMG 160 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG---VMLAISL 243 MGEPL N+DNVKKS+ I + S R+IT+S+SG + I R+ E+ V LA+SL Sbjct: 161 MGEPLANYDNVKKSVQIFTHPDMCKLSHRKITISSSGILHQIKRMFEDKDFPQVKLAVSL 220 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 +A R+ L+PI++ LE L+D R P L RIT EYV++K +ND+ DA L+ Sbjct: 221 NASHQSQRSYLMPISQTNTLEDLMDLLRKLP-LKPGWRITLEYVLIKNVNDTVEDAKRLV 279 Query: 304 KILKGIPA--KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 ++K K+NLIPFNP+PG ++ ++ ++ F + + + ++ IR +G DI AA Sbjct: 280 NLIKKDKHRFKVNLIPFNPYPGSDFERPEESRVLAFEKVLWDNNIATFIRWSKGRDIDAA 339 Query: 362 CGQLK 366 CGQL+ Sbjct: 340 CGQLR 344 >gi|329770490|ref|ZP_08261868.1| ribosomal RNA large subunit methyltransferase N [Gemella sanguinis M325] gi|328836239|gb|EGF85908.1| ribosomal RNA large subunit methyltransferase N [Gemella sanguinis M325] Length = 377 Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 129/369 (34%), Positives = 203/369 (55%), Gaps = 25/369 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +K S+ + ++LEE ++ IG + R QI+ W+Y + + DF M +I + ++ Sbjct: 18 FEKMSIYSIRLDQLEEYMISIG----EKKFRAKQIYDWLYKKRVTDFSEMKNIPKSLQEK 73 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L F I + ++ S DGT K+L + IE+V + K +LCV++QVG Sbjct: 74 LKDEFEITTLNTIIKQESADGTMKFLFELQDK-----FTIESVLMRNKYGNSLCVTTQVG 128 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C+FC + L RNL A EI+ QVL + L G +IS+IV Sbjct: 129 CRIGCTFCASTLGGLKRNLEAGEIVSQVLKVQQEL--------------DKKGERISSIV 174 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+D + + I + + R IT+STSG VP I E I + A+S Sbjct: 175 IMGIGEPFENYDEMMDFIKIVNSDESFNIGARHITVSTSGIVPRIYDFANENIQINFAVS 234 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++P+NR Y ++ L++A R+Y +N RRITFEY ++ +ND A L Sbjct: 235 LHAPTNELRSKIMPVNRAYNIDKLMEALRYYQKTTN-RRITFEYGLMGKVNDQKEHAEKL 293 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +I+KGI +NLIP N P Y+ + + DI F + +K++ + IR +G DI AAC Sbjct: 294 SEIIKGINCHVNLIPINYVPERNYVRTSKNDIFAFEKILKKNKVNVTIRRTQGDDIDAAC 353 Query: 363 GQLKSLSKR 371 GQL++ ++ Sbjct: 354 GQLRAKERK 362 >gi|239826567|ref|YP_002949191.1| ribosomal RNA large subunit methyltransferase N [Geobacillus sp. WCH70] gi|239806860|gb|ACS23925.1| radical SAM enzyme, Cfr family [Geobacillus sp. WCH70] Length = 364 Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 126/347 (36%), Positives = 195/347 (56%), Gaps = 21/347 (6%) Query: 26 IPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGT 85 I Q R +QI++W+Y + DF M+++ + +R L++HF I + + ++ S DGT Sbjct: 34 IEQGEKPFRATQIYEWLYQKRATDFSEMTNLPKTLREKLSEHFDITTLKTLVKQTSKDGT 93 Query: 86 RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAE 145 K+L + IETV + ++CV++QVGC + C+FC + L R+L A Sbjct: 94 IKFLFE-----LHDGYSIETVLMRHNYGNSICVTTQVGCRIGCTFCASTLGGLKRHLEAG 148 Query: 146 EILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS 205 EI+ QV+ + L + G ++S+IV+MG+GEP N+D + K L I + Sbjct: 149 EIVAQVVKVQKALDE--------------QGERVSSIVVMGIGEPFDNYDELIKFLKIVN 194 Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLE 264 S GL+ R IT+STSG +P I + +E + V AISLHA + +LR L+PIN+ YPL Sbjct: 195 HSKGLNIGARHITVSTSGIIPKIYQFADEGMQVNFAISLHAPTTELRTKLMPINKAYPLP 254 Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGC 324 L+DA R+Y RR+TFEY + G+ND A L +++KG+ +NLIP N P Sbjct: 255 KLMDAVRYYIE-KTGRRVTFEYGLFGGVNDQIEHAEQLAELIKGLKCHVNLIPVNYVPER 313 Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 Y+ + + I F +K+ G + IR G DI AACGQL++ ++ Sbjct: 314 NYVRTPRDQIFAFERALKKHGINVTIRREHGHDIDAACGQLRAKERK 360 >gi|91200995|emb|CAJ74052.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 368 Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 140/367 (38%), Positives = 200/367 (54%), Gaps = 26/367 (7%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN L+ S+ + E E +G P R QI W+Y +G DF MSDI Sbjct: 1 MNKLQLTSITELDLSESVELCRSLGEPS----YRGKQILSWMYKKGATDFNQMSDIPLPF 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L + ++ +I S DGT K+L+ P + IE V + + R T CVS+ Sbjct: 57 REKLEEAHNVFQTKIHTINTSQDGTEKFLIHLPDNNL-----IECVLLRDGKRRTACVST 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC++ CSFC +G L RNL EI+ QVL ++ L P E I+ Sbjct: 112 QVGCAMGCSFCASGVLGLTRNLKTGEIIEQVLHIKNHL---PANE------------HIT 156 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239 NIV MG+GEPL N+D V KSL I + GL+ R IT+ST G + I R+ +E + V L Sbjct: 157 NIVFMGIGEPLANYDKVVKSLRIMNADWGLAIGARNITISTVGLIEGIRRLAKEGLKVNL 216 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 AISLHA +++ RN LVP N K ++ ++ A + Y ++ R I+FEY M+ GINDS +DA Sbjct: 217 AISLHASNDNTRNKLVPSNSKTGIKNILGAAQEYFNATH-RDISFEYTMIDGINDSKQDA 275 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L +ILKG+ +N++P NP + QK + TF +K G + +R +G+++ Sbjct: 276 KLLAQILKGVQCNVNILPVNPIKEGNFAPPVQKTVETFCTVLKNHGIVATVRQRKGINVN 335 Query: 360 AACGQLK 366 AACGQL+ Sbjct: 336 AACGQLR 342 >gi|239636303|ref|ZP_04677305.1| radical SAM enzyme, Cfr family [Staphylococcus warneri L37603] gi|239597658|gb|EEQ80153.1| radical SAM enzyme, Cfr family [Staphylococcus warneri L37603] Length = 364 Score = 226 bits (577), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 127/371 (34%), Positives = 209/371 (56%), Gaps = 25/371 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +K+S+ + +E++ L++ G + R QI++W+Y + + M+++S+++R L Sbjct: 16 FEKQSIYSLRYDEMQNWLIEHG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKDLRQL 71 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +F++ V ++ S DGT K+L + IETV + + ++CV++QVG Sbjct: 72 LKDNFAMTTLTTVVKQESRDGTIKFLFE-----LQDGYTIETVLMRHEYGNSVCVTTQVG 126 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C+FC + L RNL A EI+ QVL + L + ++S IV Sbjct: 127 CRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TEERVSQIV 172 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+D + L I +D L+ R IT+STSG +P I EE I + A+S Sbjct: 173 IMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVS 232 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LH +++R+ L+PINR Y +E L++A +Y +N RRITFEY + G+ND A +L Sbjct: 233 LHGAKDEVRSRLMPINRAYNVEKLMEAIEYYQEKTN-RRITFEYGLFGGVNDQLEHARDL 291 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++KG+ +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AAC Sbjct: 292 AHLIKGLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAAC 351 Query: 363 GQLKSLSKRIP 373 GQL++ +++ Sbjct: 352 GQLRAKERQVE 362 >gi|282600947|ref|ZP_05980240.2| radical SAM enzyme, Cfr family [Subdoligranulum variabile DSM 15176] gi|282570117|gb|EFB75652.1| radical SAM enzyme, Cfr family [Subdoligranulum variabile DSM 15176] Length = 345 Score = 226 bits (577), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 131/353 (37%), Positives = 199/353 (56%), Gaps = 30/353 (8%) Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75 EL ++ +G P + R QI+KW++ + + +F M+D + + +L + +I P I Sbjct: 13 ELTAYIVGLGQP----KFRAKQIFKWLHQKLVTEFTQMTDQPKTLLAVLEEQCTIAVPTI 68 Query: 76 VDEKISCDGTRKWLLRFP-ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134 ++ S DGT K+LL+ CI ETV + K T+CVS+QVGC++ C FC + Sbjct: 69 RRKQQSKDGTVKYLLQLADGNCI------ETVLMRYKYGNTVCVSTQVGCAMGCRFCAST 122 Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194 VR+LTA EI ++ A+ G ++S+IV+MG+GEPL NF Sbjct: 123 QAGRVRDLTAGEIAAEIYTAQK-----------------DSGERVSHIVLMGIGEPLHNF 165 Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNI 253 DNV L I S G++ R I+LST G VP I + + + + L++SLHA N R+ Sbjct: 166 DNVMDFLEIISCPEGVNIGMRNISLSTCGLVPKIDELAKRHLQLTLSVSLHAPDNVTRSG 225 Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313 ++P+N YPLE LI ACR Y RRI+FEY M++G+NDS A L +++ G+ A + Sbjct: 226 MMPVNDAYPLEELIPACRRYQK-ETGRRISFEYSMVRGVNDSSEMAQKLARLIHGMGAHV 284 Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 NLIP NP G Y +D+ ++ F + ++ G ++ +R G DI AACGQL+ Sbjct: 285 NLIPINPVDGSPYSATDEANVRRFQQELEHLGVNATVRRRLGTDISAACGQLR 337 >gi|325297954|ref|YP_004257871.1| Ribosomal RNA large subunit methyltransferase N [Bacteroides salanitronis DSM 18170] gi|324317507|gb|ADY35398.1| Ribosomal RNA large subunit methyltransferase N [Bacteroides salanitronis DSM 18170] Length = 348 Score = 226 bits (577), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 129/369 (34%), Positives = 197/369 (53%), Gaps = 29/369 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G +EL +A+ ++G+P R QI +W+Y + + M+++S R LL Sbjct: 2 KTALLGKTLDELNDAVKELGMPAFSAR----QIAQWLYGKKVSSIDEMTNLSLRNRELLK 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +H+ + V S DGT K+L R P +E+VYIP+ R TLCVSSQVGC Sbjct: 58 EHYEVGAALPVHAMRSADGTVKYLFRTPEGNF-----VESVYIPDGERATLCVSSQVGCK 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q +LT +IL Q+ IP ++N+V M Sbjct: 113 MNCKFCMTGKQGYAGSLTVTQILNQIY------------------SIPERD-SLTNVVFM 153 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEP N D V ++L I + G ++S +RIT+ST G + R E LA+SLH+ Sbjct: 154 GMGEPFDNLDAVLRALEILTSDYGYAWSPKRITVSTVGLRRGLERFLAESDCHLAVSLHS 213 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 R L+P R +P+ +++ R+Y S RR++FEY++ G+NDS A L+K+ Sbjct: 214 PFPSQRAELMPAERAFPITEIVNVLRNYD-FSKQRRLSFEYILFGGVNDSLVYAKELVKL 272 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G+ +INLI F+ PG + +D + + F + + + G + IR RG DI AACG L Sbjct: 273 LRGLDCRINLIRFHAIPGVDLQGADMETMTAFRDYLTKHGIFATIRASRGEDIFAACGML 332 Query: 366 KSLSKRIPK 374 + ++ K Sbjct: 333 STAEQQAEK 341 >gi|27262416|gb|AAN87489.1| florfenicol resistance protein [Heliobacillus mobilis] Length = 360 Score = 226 bits (577), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 136/374 (36%), Positives = 206/374 (55%), Gaps = 34/374 (9%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K L G++ EE+ + L + G H R QI+KW+ R +R+ M+D+ Q +R + Sbjct: 6 EKTELRGLLPEEMAQTLQEWG----HPAYRGKQIFKWVQSRAVREAAEMTDLPQALRSKI 61 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-----EKSRGTLCVS 119 + + ++S DGT K+L + + IETV +P + R T+C+S Sbjct: 62 EAERWLRPLALSCCRVSKDGTEKYLWQLADGEL-----IETVLMPYRRSQTRDRVTVCLS 116 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI---EGMVIPSVG 176 +Q GC L C FC TG Q RNLTA EI+ QVL DI +G P Sbjct: 117 TQAGCPLGCKFCATGQQGFRRNLTAGEIVSQVL-------------DITHRKGQSDPDF- 162 Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-I 235 K++N+V MGMGEP N++ V++++ + + G + +RRIT+STSG VP I R E Sbjct: 163 -KVTNLVFMGMGEPFLNYEQVRRAIELFTHPEGQNIGQRRITVSTSGIVPGIERFARENW 221 Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 + LA+SLHA + LR+ +P+NR+YP+E +++ACR Y RR++ EY +++G+ND Sbjct: 222 EINLALSLHAADDQLRSQWMPVNRQYPIEKVLNACRRY-WEQGRRRLSVEYALIEGVNDR 280 Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 DA L K+ P +N+IP NP D+ +V F + +KR G + IR RG Sbjct: 281 LEDARQLGKLFTRWPIHLNVIPVNPVTESGARRPDKARMVQFLDELKRQGIDAVIREERG 340 Query: 356 LDILAACGQLKSLS 369 +DI AACGQL+ + Sbjct: 341 VDIEAACGQLRGAA 354 >gi|237721458|ref|ZP_04551939.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229449254|gb|EEO55045.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 344 Score = 226 bits (576), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 130/364 (35%), Positives = 198/364 (54%), Gaps = 29/364 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K L+GM EL+ ++ +P QI W+Y + + M+++S + R L Sbjct: 1 MSKYPLLGMTLVELQSLTKRLDMPG----FAAKQIASWLYEKKVASIDDMTNLSLKHREL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L Q++ + VDE S DGT K+L + +G +E+VYIP+ R TLCVSSQVG Sbjct: 57 LKQNYEVGAEAPVDEMRSVDGTVKYLYK-----VGENHFVESVYIPDDDRATLCVSSQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG Q NLTA +I+ Q+ +P K++N+V Sbjct: 112 CKMNCKFCMTGKQGYTANLTASQIINQI------------------HSLPERD-KLTNVV 152 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N D V K+L + + + G ++S +RITLST G + R EE LAISL Sbjct: 153 MMGMGEPLDNLDEVLKALELLTATYGYAWSPKRITLSTVGLRKGLQRFIEENDCHLAISL 212 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ R L+P + + + +++ ++Y S RR++FEY++ KG+NDS A L+ Sbjct: 213 HSPLTVQRAELMPAEKAFSITEMVELLKNYD-FSKQRRLSFEYIVFKGLNDSQVYAKELL 271 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+L+G+ ++NLI F+ PG + +D + F + + G + IR+ RG DI AACG Sbjct: 272 KLLRGLDCRVNLIRFHAIPGVDLEGADMDTMTRFRDYLTSHGLFTTIRSSRGEDIFAACG 331 Query: 364 QLKS 367 L + Sbjct: 332 MLST 335 >gi|94990786|ref|YP_598886.1| ribosomal RNA large subunit methyltransferase N [Streptococcus pyogenes MGAS10270] gi|123257976|sp|Q1JG02|RLMN_STRPD RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|94544294|gb|ABF34342.1| Radical SAM family enzyme [Streptococcus pyogenes MGAS10270] Length = 359 Score = 226 bits (576), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 133/368 (36%), Positives = 210/368 (57%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+EL E ++ G Q R +QIW W+Y + ++ F+ M++IS++ +LN Sbjct: 2 KPSIYSLTRDELIEWAVERGQKQ----FRATQIWDWLYKKRVQSFEEMTNISKDFVSILN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + +V E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DSFCVNPLKQRVVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L + EI Q++L + D G ++S++V Sbjct: 111 CNIGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDD------------RKQGERVSHVV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+ NV L + +D GL+ R IT+STSG I E + V LA+S Sbjct: 159 VMGIGEPFDNYKNVMCFLRVINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +NDLR+ ++ +NR +PLE L A +Y +N RR+TFEY+ML +NDS + A L Sbjct: 219 LHAPNNDLRSSIMRVNRSFPLEKLFSAIEYYIEKTN-RRVTFEYIMLNEVNDSIKQAQEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 + K I + +NLIP+NP +Y S ++ ++ F + +K++G + +R G DI Sbjct: 278 ADLTKTIRKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDVLKKNGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|237755450|ref|ZP_04584074.1| radical SAM enzyme, Cfr family [Sulfurihydrogenibium yellowstonense SS-5] gi|237692382|gb|EEP61366.1| radical SAM enzyme, Cfr family [Sulfurihydrogenibium yellowstonense SS-5] Length = 354 Score = 226 bits (576), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 135/358 (37%), Positives = 208/358 (58%), Gaps = 29/358 (8%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 +ELE +++ G + R QI KW+Y + + M+D+S+++R+ L ++ E Sbjct: 11 KELENFVVEKGWQ----KFRAKQIAKWLYKKKASSYDEMTDLSKDIRNYLKENTEFNALE 66 Query: 75 IV-DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133 +V ++ DG+ K+L + + IETV I EK+ TLCVS+QVGC++ C FC+T Sbjct: 67 LVMYQQSKIDGSIKFLWK-----LKDGNTIETVLINEKNHKTLCVSTQVGCAVGCKFCFT 121 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 L+RNL EI+ Q + + LGD +ISNIV MGMGEPL N Sbjct: 122 TKDGLIRNLETAEIVEQYINVQRFLGD-------------EEENRISNIVYMGMGEPLAN 168 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI---GVMLAISLHAVSNDL 250 ++NVKKS+ I + + S R+IT+S+SG + I R+ E+ V LA+SL+A + D Sbjct: 169 YENVKKSVQIFTHPDMVGLSHRKITISSSGILHQIKRMYEDKEFPEVKLAVSLNASNQDQ 228 Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310 R L+PI++ L+ L+D R P L RIT EYV++KG+NDS +DA L+ +LK Sbjct: 229 RAFLMPISQTNTLQDLMDLLRSIP-LKPGWRITLEYVLIKGVNDSEQDAKRLVNLLKKDK 287 Query: 311 A--KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 K+NLIPFNP+P E+ +++ ++ F + + + ++ IR +G DI AACGQL+ Sbjct: 288 HRFKVNLIPFNPYPSAEFERPEEERVLKFEKILWDNNIATFIRWSKGRDIDAACGQLR 345 >gi|312143909|ref|YP_003995355.1| radical SAM enzyme, Cfr family [Halanaerobium sp. 'sapolanicus'] gi|311904560|gb|ADQ15001.1| radical SAM enzyme, Cfr family [Halanaerobium sp. 'sapolanicus'] Length = 347 Score = 226 bits (575), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 139/360 (38%), Positives = 201/360 (55%), Gaps = 28/360 (7%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 + R EL + L G P R Q++ W+Y GI + + M +I E++ LN ++ I Sbjct: 7 LKRNELIKELKNAGFPA----YRGEQVFNWLYKNGISETEKMKNIPGELKEYLNDNYEIT 62 Query: 72 YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP--EKSRGTLCVSSQVGCSLTCS 129 + + + DGT K+L + IE VY+P E +R + C+S+QVGC L CS Sbjct: 63 DLKEKAKSQAADGTIKYLWE-----LKDGENIEGVYLPFPESARHSACISTQVGCGLGCS 117 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 FC TG L RNLT EI+ QVL + D E E ++SNIV MGMGE Sbjct: 118 FCATGINGLERNLTTAEIIDQVL---KIQADISRDEFAEP--------RLSNIVFMGMGE 166 Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE---EIGVMLAISLHAV 246 PL NF+N+ +++ I + GL+ R++T+ST G VP I ++ + +IG LA+SLHA Sbjct: 167 PLANFENLMQAVEIINSDNGLNIGMRKMTISTVGLVPEIKKLADRNDQIG--LAVSLHAP 224 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ LRN ++PIN+KY L L+ A Y + RR+TFEYV++ +NDSP A+ L+++L Sbjct: 225 NDRLRNKIMPINKKYNLNQLLTAVIDYIEKT-GRRVTFEYVLMDSVNDSPELAVQLVELL 283 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +GI +NLIP NP P QK I +F + +G +R G I AACGQLK Sbjct: 284 RGINCHVNLIPANPVPELNIKKPVQKVIDSFYSTLDNNGIQVSLRREMGSQIDAACGQLK 343 >gi|323342528|ref|ZP_08082760.1| cfr family radical SAM enzyme [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463640|gb|EFY08834.1| cfr family radical SAM enzyme [Erysipelothrix rhusiopathiae ATCC 19414] Length = 347 Score = 226 bits (575), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 120/337 (35%), Positives = 197/337 (58%), Gaps = 21/337 (6%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R R Q+++W+Y + + F MSD+S +R L Q F + ++V ++++ D T K+LL Sbjct: 23 RFRAKQLFQWLYQKRVTSFDDMSDLSISLREKLKQDFELDTLKVVMKQVASDETTKFLLE 82 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 C G + IETV + ++CV+SQVGC++ C FC +G K RNLT+ E++ Q+ Sbjct: 83 ----CSDGAL-IETVMMKHDYGYSVCVTSQVGCAMGCKFCASGLLKKKRNLTSAEVVNQI 137 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 + + L + +++S+IV+MG+GEP N+DN+ + + I + GL Sbjct: 138 MFVQRHLDE--------------QDKRVSHIVVMGIGEPFDNYDNIMRFIRIVNHDHGLG 183 Query: 212 FSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 R IT+STSG P I + E+ V LAISLHA ++ LR+ ++P+N+ + LE L DA Sbjct: 184 IGARHITISTSGVAPVIKKFADEQTQVNLAISLHAPNDTLRSEIMPVNKMFNLEKLFDAL 243 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 ++Y SN RR+TFEY+++ +ND A L+ +++G+ A +NLIP+N + + Sbjct: 244 KYYQSKSN-RRLTFEYILIDNVNDQIAQAKELVALIRGMNAYVNLIPYNEVDENPFRQTK 302 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 + F + +KR+G IR +G +I AACGQL++ Sbjct: 303 PEQAAKFYDYLKRNGIQCTIRREKGSEIDAACGQLRA 339 >gi|314933392|ref|ZP_07840757.1| radical SAM enzyme, Cfr family [Staphylococcus caprae C87] gi|313653542|gb|EFS17299.1| radical SAM enzyme, Cfr family [Staphylococcus caprae C87] Length = 364 Score = 226 bits (575), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 125/371 (33%), Positives = 208/371 (56%), Gaps = 25/371 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 K+S+ + +E+++ L+ G + R QI++W+Y + + M+++S+E+R + Sbjct: 16 FDKQSIYSLRYDEMQQWLIDHG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKELRQV 71 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +F++ V ++ S DGT K+L + IETV + + ++CV++QVG Sbjct: 72 LKDNFAMTTLTTVVKQESKDGTIKFLFE-----LQDGYTIETVLMRHEYGNSVCVTTQVG 126 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C+FC + L RNL A EI+ QVL + L + ++S IV Sbjct: 127 CRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TDERVSQIV 172 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+D + L I +D L+ R IT+STSG +P I EE I + A+S Sbjct: 173 IMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVS 232 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LH +++R+ L+PINR Y +E L++A ++Y +N RR+TFEY + G+ND A +L Sbjct: 233 LHGAKDEIRSRLMPINRAYNVEKLMEAIKYYQEQTN-RRVTFEYGLFGGVNDQLEHARDL 291 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++K + +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AAC Sbjct: 292 AHLIKNLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAAC 351 Query: 363 GQLKSLSKRIP 373 GQL++ +++ Sbjct: 352 GQLRAKERQVE 362 >gi|306832938|ref|ZP_07466070.1| cfr family radical SAM enzyme [Streptococcus bovis ATCC 700338] gi|304424837|gb|EFM27971.1| cfr family radical SAM enzyme [Streptococcus bovis ATCC 700338] Length = 368 Score = 226 bits (575), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 133/368 (36%), Positives = 215/368 (58%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+EL E ++ G + R +QIW W+Y + ++ F+ M++IS++ +LN Sbjct: 9 KPSIYALTRDELIEWAIEHG----EKKFRATQIWDWLYRKRVQSFEEMTNISKDFIAVLN 64 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 ++F + + +V E + DGT K+L P + IETV + + ++CV+SQVG Sbjct: 65 ENFCVNPLKQRVVQE--ASDGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTSQVG 117 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ CSFC +G K R+LT+ EI Q+++ + D G ++ ++S++V Sbjct: 118 CNIGCSFCASGLLKKQRDLTSGEITSQIMMVQKYF-DERGQDE-----------RVSHVV 165 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N++NV + L +D GL+ R IT+STSG I E + V LA+S Sbjct: 166 VMGIGEPFDNYNNVLRFLRTINDDNGLAIGARHITVSTSGLAHKIRDFAHESLQVNLAVS 225 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ +NR +PLE L A +Y +N RR+TFEY+ML +ND P +A L Sbjct: 226 LHAPNNELRSQIMRVNRSFPLEKLFAAIEYYVETTN-RRVTFEYIMLNEVNDFPENAQEL 284 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 + K I + INLIP+NP +Y S ++ + F + +K++G + +R G DI Sbjct: 285 ADLTKKIRKLSYINLIPYNPVSEHDQYSRSSKERVAAFYDVLKKNGVNCVVRQEHGTDID 344 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 345 AACGQLRS 352 >gi|120434720|ref|YP_860407.1| radical SAM superfamily protein, UPF0063 [Gramella forsetii KT0803] gi|205829770|sp|A0LY94|RLMN_GRAFK RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|117576870|emb|CAL65339.1| radical SAM superfamily protein, UPF0063 [Gramella forsetii KT0803] Length = 352 Score = 226 bits (575), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 128/358 (35%), Positives = 201/358 (56%), Gaps = 20/358 (5%) Query: 13 MREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIY 72 +R +E L K + + R +Q+++W++ + F M++IS+E R +L +F I + Sbjct: 13 IRALTKEQLQKFFVAEGDKSFRGTQVYEWLWSKAAHSFDDMTNISKETRQMLKDNFVINH 72 Query: 73 PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132 + + S DGT K ++ + + +E+V IP KSR T CVSSQVGCSL C FC Sbjct: 73 IRVDRMQRSSDGTIKNAVK-----LHDALTVESVLIPTKSRTTACVSSQVGCSLDCQFCA 127 Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192 T K +RNL +EI QV+ I+ R +SNIV MGMGEPL Sbjct: 128 TAKLKRMRNLNPDEIYDQVVA-------------IDNESRLYFDRPLSNIVFMGMGEPLM 174 Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLR 251 N++NV K++ + GL S +RIT+STSG I ++ +E + LA+SLH+ N++R Sbjct: 175 NYNNVMKAVEKITSPEGLGMSPKRITISTSGVPKMIKKLADDEAKIKLAVSLHSARNEVR 234 Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311 ++P N +PLE L +A ++ + + RIT+EY++ K IND+ DA L++ K +P Sbjct: 235 TQIMPFNETFPLEDLREALEYWYSKTTS-RITYEYIVWKDINDTREDAQALVRFCKYVPC 293 Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369 K+NLI +NP + + + + + ++R+G + +R RG DI AACGQL + S Sbjct: 294 KVNLIEYNPIDDGNFQQAAIEATNMYQDMLERNGITVTVRRSRGKDIDAACGQLANKS 351 >gi|150390541|ref|YP_001320590.1| radical SAM protein [Alkaliphilus metalliredigens QYMF] gi|205829711|sp|A6TRW3|RLMN_ALKMQ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|149950403|gb|ABR48931.1| radical SAM enzyme, Cfr family [Alkaliphilus metalliredigens QYMF] Length = 352 Score = 226 bits (575), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 134/365 (36%), Positives = 204/365 (55%), Gaps = 30/365 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K L+ + EE+E L+IG + R Q ++W+ +GI+ ++ M+++S+++ Sbjct: 1 MDKVDLLSLTMEEMESLFLEIG----EKKFRAKQAFQWVN-KGIKQYEEMTNLSKKLIKQ 55 Query: 64 LNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L++ I + I ++ +S DGT K+L I IE V + K T C+S+QV Sbjct: 56 LSEETRITHNRIEEKFVSKIDGTVKYLFLLDDGHI-----IEGVLMKYKHGFTACISTQV 110 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC++ C FC + T L+RNL A E++ Q+LL + G +ISNI Sbjct: 111 GCAMGCQFCASTTGGLIRNLRAGEMIDQILLMQQ-----------------DQGERISNI 153 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241 V+MG GEPL N+D + L I +D GL+ R ITLST G VP I ++G +I + LAI Sbjct: 154 VLMGSGEPLHNYDETIRFLKIVNDPEGLNIGNRHITLSTCGLVPEIKKLGALQIPINLAI 213 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++ LR +PI +KY ++ LI +C Y +N RRITFEY +++ +ND ++A Sbjct: 214 SLHAPNDQLRKQTMPIAQKYTIDQLIQSCYDYLE-NNNRRITFEYALIEDVNDGEKEAHE 272 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L K+LKG+ +NLIP NP Y S + F + +K +G + IR G DI A Sbjct: 273 LSKLLKGLLCHVNLIPINPIEERTYQKSKDSQVKKFQQILKSNGIEATIRREMGTDIQGA 332 Query: 362 CGQLK 366 CGQL+ Sbjct: 333 CGQLR 337 >gi|319947501|ref|ZP_08021733.1| cfr family radical SAM enzyme [Streptococcus australis ATCC 700641] gi|319746441|gb|EFV98702.1| cfr family radical SAM enzyme [Streptococcus australis ATCC 700641] Length = 362 Score = 226 bits (575), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 135/368 (36%), Positives = 214/368 (58%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ G+ R+EL E + G + R +QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYGLTRQELIEWAEENG----EKKFRATQIWEWLYRKRVQSFEEMTNLSKDLIETLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F I + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DQFVINPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L + EI+ Q++L + D G ++ ++S+IV Sbjct: 111 CNIGCTFCASGLIKKQRDLNSGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+ NV + +D GL+ R IT+STSG I E + V LA+S Sbjct: 159 VMGIGEPFDNYKNVLSFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +NDLR+ ++ INR +P+E L A +Y +N RR+TFEY+ML +ND AL L Sbjct: 219 LHAPNNDLRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++LK I + +NLIP+NP +Y S ++ ++ F + +K++G + +R G DI Sbjct: 278 AELLKKIKKLSYVNLIPYNPVSEHDQYSRSPRERVMAFYDTLKKNGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|319892212|ref|YP_004149087.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus pseudintermedius HKU10-03] gi|317161908|gb|ADV05451.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus pseudintermedius HKU10-03] gi|323464690|gb|ADX76843.1| radical SAM enzyme, Cfr family [Staphylococcus pseudintermedius ED99] Length = 364 Score = 226 bits (575), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 129/369 (34%), Positives = 206/369 (55%), Gaps = 25/369 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +K+S+ + +EL+ L + G R QI++W+Y + + F+ M+++S+ +R L Sbjct: 16 FEKQSIYSLRFDELQGWLKENG----QQSFRAKQIYEWLYDKRVDSFEEMTNLSKALRQL 71 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L HF+I V + S DGT K+L + IETV + ++CV++QVG Sbjct: 72 LADHFTITTLATVVRQESRDGTIKFLFE-----LQDGYTIETVLMRHDYGNSVCVTTQVG 126 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C+FC + L RNL A EI+ QVL + L + ++S+IV Sbjct: 127 CRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TDERVSSIV 172 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+D + L I +D L+ R IT+STSG VP I +E + + A+S Sbjct: 173 IMGIGEPFENYDEMMDFLKIVNDDHSLNIGARHITVSTSGIVPRIYDFADESLQINFAVS 232 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N++R+ L+PINR Y ++ L++A ++Y RRITFEY + G+ND A L Sbjct: 233 LHAANNEIRSKLMPINRAYDVDKLMEAIQYYQE-KTKRRITFEYGLFGGVNDQLEHAREL 291 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K++K + +NLIP N P Y+ + + DI F + +K+ G ++ IR +G DI AAC Sbjct: 292 AKLIKPLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKKLGINATIRREQGADIDAAC 351 Query: 363 GQLKSLSKR 371 GQL++ ++ Sbjct: 352 GQLRAKERQ 360 >gi|222151049|ref|YP_002560203.1| hypothetical protein MCCL_0800 [Macrococcus caseolyticus JCSC5402] gi|222120172|dbj|BAH17507.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 363 Score = 225 bits (574), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 129/369 (34%), Positives = 207/369 (56%), Gaps = 25/369 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 K S+ + EL+E L G R QI+ W+YV+ + F+ MS++S+E+R + Sbjct: 15 FDKPSIYSLQLGELKEWLATHG----QQSFRAKQIYDWLYVKRVNSFEEMSNLSKELRKV 70 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +F++ + V ++ S DGT K+L + IETV + ++CV++QVG Sbjct: 71 LEDNFTMTTLKTVVKQESKDGTIKFLFE-----LQDGYTIETVLMRHDYGNSVCVTTQVG 125 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C+FC + L RNL A EI+ QVL + L + V ++S++V Sbjct: 126 CRIGCTFCASTLGGLKRNLEAGEIVAQVLNVQKALDE--------------VEERVSHVV 171 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242 +MG+GEP N++ + L + + GL+ R IT+STSG +P I EE+ + A+S Sbjct: 172 IMGIGEPFENYEEMMDFLKVINHDDGLNIGARHITVSTSGIIPRIYDFADEELQINFALS 231 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LH +ND+R+ L+PINR Y LE L+++ +Y RRITFEY + G+ND A L Sbjct: 232 LHGPNNDIRSRLMPINRAYDLEKLMESIEYYVN-KTGRRITFEYGLFGGVNDQVHHAKEL 290 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +++K + +NLIP N P +Y+ + ++DI F + +KR+G ++ IR G DI AAC Sbjct: 291 AQLIKHLNCHVNLIPVNHVPERDYVRTPKEDIFKFEKELKRNGINATIRREHGSDIDAAC 350 Query: 363 GQLKSLSKR 371 GQL++ ++ Sbjct: 351 GQLRAKERQ 359 >gi|319953716|ref|YP_004164983.1| 23S rRNA m(2)a-2503 methyltransferase [Cellulophaga algicola DSM 14237] gi|319422376|gb|ADV49485.1| 23S rRNA m(2)A-2503 methyltransferase [Cellulophaga algicola DSM 14237] Length = 347 Score = 225 bits (574), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 132/371 (35%), Positives = 208/371 (56%), Gaps = 26/371 (7%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M+ +KK+ + + +E+L E + G R +Q+++W++ +G F+ M+++S+E Sbjct: 1 MDTIKKKDIRALTKEQLREFFVTNGDKA----FRGNQVYEWLWQKGAHSFEAMTNVSKET 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R +L Q+F I + ++ + S DGT K +R I +E+V IP K+R T CVSS Sbjct: 57 RDMLEQNFVINHIKVDVMQRSNDGTIKNAVRLHDDLI-----VESVLIPTKTRSTACVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGCSL C FC T K +RNL +EI QV+ I+ R +S Sbjct: 112 QVGCSLDCKFCATSRLKRMRNLNPDEIYDQVVA-------------IDNESRLYFNRPLS 158 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVM 238 NIV MGMGEPL N++NV K++ + + GL S +RI +STSG VP + R +E+ Sbjct: 159 NIVFMGMGEPLMNYNNVLKAIDMITSPEGLGMSPKRIVVSTSG-VPKMIRKMADDEVKFK 217 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLH+ +++R ++P N + L L + +++ + +R IT+EYV+ KGINDS +D Sbjct: 218 LAVSLHSAIDEIRTSIMPFNANFTLTDLRQSLQYWYAKTRSR-ITYEYVIWKGINDSQKD 276 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 L+ K P+K+NLI +NP E+ + I + +++ + +R RG DI Sbjct: 277 VDALVDFCKFAPSKVNLIEYNPIDDGEFQQASNAAIDMYVNTLEQHNIAVTVRRSRGKDI 336 Query: 359 LAACGQLKSLS 369 AACGQL + S Sbjct: 337 DAACGQLANKS 347 >gi|315639331|ref|ZP_07894493.1| cfr family radical SAM enzyme [Campylobacter upsaliensis JV21] gi|315480657|gb|EFU71299.1| cfr family radical SAM enzyme [Campylobacter upsaliensis JV21] Length = 356 Score = 225 bits (574), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 138/354 (38%), Positives = 199/354 (56%), Gaps = 34/354 (9%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI +WIY + DF MS++ + +R L +++ + V E+ S DG+ K+L Sbjct: 23 FRVKQICQWIYQKYADDFSKMSNLPKNLREELAKNYHFEPLKCVKEERSKDGSIKYLFE- 81 Query: 93 PARCIGGPVEIETVYIPEK-------------SRGTLCVSSQVGCSLTCSFCYTGTQKLV 139 + + IE+V +P K ++ T+CVSSQVGC CSFC T L Sbjct: 82 ----LKDGLRIESVLLPMKEEKFDGEGKRLSHAKFTICVSSQVGCRSGCSFCLTAKGGLK 137 Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199 RNL+A EI+ Q+L + IP R NIV MGMGEPL N +NV K Sbjct: 138 RNLSAGEIVGQILWIK------------RQNHIPYERR--VNIVYMGMGEPLDNLNNVAK 183 Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPIN 258 ++ I S + L+ S RR T+STSG I +GE +GV+LAISLHAV+++LR+ L+PIN Sbjct: 184 AVRILSHNDTLAISVRRQTISTSGLAKQIKELGEMNLGVLLAISLHAVNDELRSKLMPIN 243 Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318 + Y + ++ A R +P + +++ FEY+++ GIND A L+K+L GI AK+NLI F Sbjct: 244 KAYNIASVMQAVREFP-IDMRKKVMFEYLLIDGINDKIEHAKELVKLLNGIKAKVNLILF 302 Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRI 372 NP G Y ++ V F + + + G + IR +GLDI AACGQLK K + Sbjct: 303 NPHQGSIYKRPSLENAVKFQDLLSQKGVTCTIRESKGLDISAACGQLKEREKNL 356 >gi|308810124|ref|XP_003082371.1| from E. coli sequence gb|U02965. (ISS) [Ostreococcus tauri] gi|116060839|emb|CAL57317.1| from E. coli sequence gb|U02965. (ISS) [Ostreococcus tauri] Length = 602 Score = 225 bits (574), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 127/291 (43%), Positives = 179/291 (61%), Gaps = 22/291 (7%) Query: 81 SCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVR 140 + DGTRK A GG VE +V IP R T+CVSSQ+GC++ C FC+T T L + Sbjct: 155 ASDGTRKVTYAL-ADDSGGIVE--SVLIPSGRRTTVCVSSQLGCAMNCQFCFTATMGLRK 211 Query: 141 NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKS 200 NL+A +I+ QV+ AR + C++ G ++SN+V MGMGEPL N D V K+ Sbjct: 212 NLSAAQIVEQVVRARRM------CDE---------GEEVSNVVFMGMGEPLHNIDEVLKA 256 Query: 201 LSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260 + I D GL+FS+ ++T+STSG VP + R E LA+SL+A ++ +RN ++PINRK Sbjct: 257 VDILLDPRGLAFSRNKVTVSTSGLVPQMERFLTESEASLAVSLNATTDYIRNWIMPINRK 316 Query: 261 YPLEMLIDAC-RHYPGLS---NARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLI 316 Y L+ L+ R +P + R++ FEY+ML G+NDS DA LI+I K +P KINLI Sbjct: 317 YNLDSLLGLLRREFPRTDLGRHQRQVFFEYIMLAGVNDSDEDADRLIEIAKSLPCKINLI 376 Query: 317 PFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 FN G E+ CSDQ+ I F + + +G + IR RG + ++ACGQL S Sbjct: 377 YFNTHDGAEFKCSDQERIAAFRQRVSDAGVTCTIRVSRGDEEMSACGQLGS 427 >gi|37521648|ref|NP_925025.1| hypothetical protein gll2079 [Gloeobacter violaceus PCC 7421] gi|81709852|sp|Q7NIV3|RLMN_GLOVI RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|35212646|dbj|BAC90020.1| gll2079 [Gloeobacter violaceus PCC 7421] Length = 348 Score = 225 bits (574), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 136/363 (37%), Positives = 198/363 (54%), Gaps = 33/363 (9%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+G EEL + G P R Q+ +W+Y RG+R ++D + R ++ Sbjct: 5 LLGQSAEELRIWVESQGQPA----YRAQQLHRWLYQRGVRSLMEITDWPKAWREQVHS-V 59 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVE-IETVYIPEKSRGTLCVSSQVGCSLT 127 + ++V + + DGT K+LL G E +ETV IP R T+CVSSQVGC + Sbjct: 60 PVGRSQVVRQSAAADGTIKYLL------AGADGETVETVGIPAAERLTVCVSSQVGCPMA 113 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC TG RNL EI+ QVL + EG GR++S++V MGM Sbjct: 114 CRFCATGQSGFARNLGVHEIVDQVLTVQ------------EGF-----GRRVSHVVFMGM 156 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAV 246 GEPL N V ++L + + +G+ +R+IT+ST G I R+G ++ + LA+SLHA Sbjct: 157 GEPLLNLGAVVQALRVLNGDIGIG--QRQITVSTVGVPGQIRRLGTYKLQITLAVSLHAP 214 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 + DLR L+P + YP+E L++ CR Y +N RR++FEY +L GIND P A L IL Sbjct: 215 NQDLRLKLIPTAQHYPIEELLEDCRDYVETTN-RRVSFEYTLLAGINDEPHHARELAAIL 273 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +G + +NLIP+NP G EY + + F + R ++ +R RGL+ AACGQL+ Sbjct: 274 RGFQSHVNLIPYNPIEGVEYERPGEARVRAFERELVRHKIAASVRHTRGLEEAAACGQLR 333 Query: 367 SLS 369 S Sbjct: 334 RRS 336 >gi|172058977|ref|YP_001815437.1| ribosomal RNA large subunit methyltransferase N [Exiguobacterium sibiricum 255-15] gi|205829757|sp|B1YG36|RLMN_EXIS2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|171991498|gb|ACB62420.1| radical SAM enzyme, Cfr family [Exiguobacterium sibiricum 255-15] Length = 357 Score = 225 bits (573), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 138/375 (36%), Positives = 216/375 (57%), Gaps = 28/375 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K S+ G+ E++ E L G H R Q+W W+Y + + F M++++++ L Sbjct: 1 MNKPSIYGLTLEQMTEWLSHQG----HKPFRAKQVWDWLYRKRVTTFAEMTNVNKDCLEL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L+Q F+I ++ S DGT K+L + + IETV + K ++CV++QVG Sbjct: 57 LDQSFAIDSMTQAVKQESADGTIKFLFKLYDGSL-----IETVLMRHKYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ CSFC +G K R+L+A EI+ Q++ + L D G E+ ++S++V Sbjct: 112 CNIGCSFCASGLIKKSRDLSAGEIVEQIMNVQHHL-DAVGKEE-----------RVSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242 +MG+GEP NFDN+ L++ D GL+ R IT+STSG I + + ++ V LAIS Sbjct: 160 VMGIGEPFDNFDNMVDFLNVIKDHNGLAIGARHITVSTSGLADKIYKFADLKLQVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR ++ INR PLE L+ A +Y +N R+IT EY++L+G+ND A+ L Sbjct: 220 LHAPNNELRTQIMKINRAIPLEKLMPAIDYYVKTTN-RKITIEYILLRGVNDQKAQAIEL 278 Query: 303 IKIL--KGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 K+ K +NLIP+NP +Y S +DI TF + +K++G + +R G DI Sbjct: 279 AKLFEDKRHLTYVNLIPYNPVDEHGQYQRSTSEDISTFYDTLKKNGLNCGVRLEHGTDID 338 Query: 360 AACGQLKSLSKRIPK 374 AACGQL+ SK+I K Sbjct: 339 AACGQLR--SKQIKK 351 >gi|225424671|ref|XP_002262749.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296086557|emb|CBI32146.3| unnamed protein product [Vitis vinifera] Length = 439 Score = 225 bits (573), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 127/331 (38%), Positives = 186/331 (56%), Gaps = 22/331 (6%) Query: 38 IWKWIYVRGI--RDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPAR 95 +WK +Y I + ++++ + +L++H + D + DGTRK L Sbjct: 106 LWKRLYGNNIWAHCIDELEGLNKDFKSMLSEHAEFKALTLKDSIKASDGTRKILFTLDDG 165 Query: 96 CIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLA 154 + IETV IP ++ R T+CVSSQVGC++ C FCYTG L R+LTA EI+ Q + A Sbjct: 166 LV-----IETVIIPCDRGRNTVCVSSQVGCAMNCQFCYTGRMGLTRHLTAAEIVEQAVYA 220 Query: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSK 214 R L G I+N+V MGMGEP N ++V K+ I GL FS Sbjct: 221 RRLFSSEVG--------------SITNVVFMGMGEPFHNIESVIKAADIMVHDQGLHFSP 266 Query: 215 RRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274 R++T+STSG VP + E LA+SL+A ++++RN ++PINRKY L +L+ R Sbjct: 267 RKVTVSTSGLVPQLKHFLRESNCALAVSLNATTDEVRNWVMPINRKYNLSLLLQTLREEL 326 Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDI 334 + ++ FEYVML G+NDS DA LI +++GIP K+NLI FNP G ++ + ++ I Sbjct: 327 RSKHNYKVLFEYVMLAGVNDSLEDARRLIDLVQGIPCKVNLISFNPHCGSQFKPTSEEKI 386 Query: 335 VTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + F + +G +R RG D +AACGQL Sbjct: 387 IEFRNILAEAGCIVFLRPSRGDDQMAACGQL 417 >gi|260171514|ref|ZP_05757926.1| ribosomal RNA large subunit methyltransferase N [Bacteroides sp. D2] Length = 322 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 125/331 (37%), Positives = 186/331 (56%), Gaps = 25/331 (7%) Query: 37 QIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARC 96 QI W+Y + + M+++S + R LL Q++ + VDE S DGT K+L + Sbjct: 8 QIVSWLYEKKVASIDEMTNLSLKHRELLKQNYEVGAAAPVDEMRSVDGTVKYLYK----- 62 Query: 97 IGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARS 156 +G +E+VYIP+ R TLCVSSQVGC + C FC TG Q NLTA +I+ Q+ Sbjct: 63 VGENHFVESVYIPDDDRATLCVSSQVGCKMNCKFCMTGKQGYTANLTASQIINQI----- 117 Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216 +P K++N+VMMGMGEPL N D V K+L + + + G ++S +R Sbjct: 118 -------------HSLPERD-KLTNVVMMGMGEPLDNLDEVLKALELLTANYGYAWSPKR 163 Query: 217 ITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276 ITLST G + R EE LAISLH+ R+ L+P R Y + +++ ++Y Sbjct: 164 ITLSTVGLRKGLQRFIEENDCHLAISLHSPLTAQRSELMPAERAYSITEMVELLKNYD-F 222 Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVT 336 S RR++FEY++ KG+NDS A L+K+L+G+ ++NLI F+ PG + +D + Sbjct: 223 SKQRRLSFEYIVFKGLNDSQVYAKELLKLLRGLDCRVNLIRFHAIPGVDLEGADMDTMTR 282 Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 F + + G + IR+ RG DI AACG L + Sbjct: 283 FRDYLTSHGLFTTIRSSRGEDIFAACGMLST 313 >gi|15924208|ref|NP_371742.1| radical SAM family protein [Staphylococcus aureus subsp. aureus Mu50] gi|15926801|ref|NP_374334.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus subsp. aureus N315] gi|49483381|ref|YP_040605.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus subsp. aureus MRSA252] gi|57651787|ref|YP_186093.1| hypothetical protein SACOL1230 [Staphylococcus aureus subsp. aureus COL] gi|87160347|ref|YP_493808.1| hypothetical protein SAUSA300_1111 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194924|ref|YP_499724.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267709|ref|YP_001246652.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus subsp. aureus JH9] gi|150393767|ref|YP_001316442.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus subsp. aureus JH1] gi|151221340|ref|YP_001332162.1| hypothetical protein NWMN_1128 [Staphylococcus aureus subsp. aureus str. Newman] gi|156979539|ref|YP_001441798.1| hypothetical protein SAHV_1208 [Staphylococcus aureus subsp. aureus Mu3] gi|161509390|ref|YP_001575049.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142008|ref|ZP_03566501.1| hypothetical protein SauraJ_10305 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253315576|ref|ZP_04838789.1| hypothetical protein SauraC_05407 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253731835|ref|ZP_04866000.1| Fe-S-cluster redox enzyme [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733544|ref|ZP_04867709.1| Fe-S-cluster redox enzyme [Staphylococcus aureus subsp. aureus TCH130] gi|255006005|ref|ZP_05144606.2| hypothetical protein SauraM_06030 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257425271|ref|ZP_05601696.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus 55/2053] gi|257427931|ref|ZP_05604329.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus 65-1322] gi|257430564|ref|ZP_05606946.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus subsp. aureus 68-397] gi|257433325|ref|ZP_05609683.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus subsp. aureus E1410] gi|257436167|ref|ZP_05612214.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus M876] gi|257795726|ref|ZP_05644705.1| cfr family radical SAM enzyme [Staphylococcus aureus A9781] gi|258415950|ref|ZP_05682220.1| ribosomal large subunit methyltransferase N [Staphylococcus aureus A9763] gi|258419697|ref|ZP_05682664.1| cfr family radical SAM enzyme [Staphylococcus aureus A9719] gi|258423739|ref|ZP_05686625.1| cfr family radical SAM enzyme [Staphylococcus aureus A9635] gi|258438739|ref|ZP_05689892.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus A9299] gi|258444555|ref|ZP_05692884.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus A8115] gi|258447612|ref|ZP_05695756.1| cfr family radical SAM enzyme [Staphylococcus aureus A6300] gi|258449454|ref|ZP_05697557.1| cfr family radical SAM enzyme [Staphylococcus aureus A6224] gi|258452515|ref|ZP_05700521.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus A5948] gi|258454833|ref|ZP_05702797.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus A5937] gi|262051850|ref|ZP_06024066.1| hypothetical protein SA930_1400 [Staphylococcus aureus 930918-3] gi|269202833|ref|YP_003282102.1| hypothetical protein SAAV_1190 [Staphylococcus aureus subsp. aureus ED98] gi|282892704|ref|ZP_06300939.1| cfr family radical SAM enzyme [Staphylococcus aureus A8117] gi|282903771|ref|ZP_06311659.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus C160] gi|282905535|ref|ZP_06313390.1| radical SAM enzyme Cfr family protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282908511|ref|ZP_06316341.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910790|ref|ZP_06318593.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus subsp. aureus WBG10049] gi|282913993|ref|ZP_06321780.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus M899] gi|282916467|ref|ZP_06324229.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus D139] gi|282918915|ref|ZP_06326650.1| radical SAM enzyme, Cfr family protein [Staphylococcus aureus subsp. aureus C427] gi|282920000|ref|ZP_06327729.1| cfr family radical SAM enzyme [Staphylococcus aureus A9765] gi|282924038|ref|ZP_06331714.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus C101] gi|282927558|ref|ZP_06335174.1| cfr family radical SAM enzyme [Staphylococcus aureus A10102] gi|283770279|ref|ZP_06343171.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus subsp. aureus H19] gi|283957959|ref|ZP_06375410.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus A017934/97] gi|284024142|ref|ZP_06378540.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus subsp. aureus 132] gi|293501026|ref|ZP_06666877.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus 58-424] gi|293509985|ref|ZP_06668693.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus M809] gi|293526573|ref|ZP_06671258.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus M1015] gi|294848211|ref|ZP_06788958.1| cfr family radical SAM enzyme [Staphylococcus aureus A9754] gi|295407156|ref|ZP_06816957.1| LOW QUALITY PROTEIN: cfr family radical SAM enzyme [Staphylococcus aureus A8819] gi|295427703|ref|ZP_06820335.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus EMRSA16] gi|296275239|ref|ZP_06857746.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus subsp. aureus MR1] gi|297245958|ref|ZP_06929817.1| cfr family radical SAM enzyme [Staphylococcus aureus A8796] gi|297591338|ref|ZP_06949976.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus MN8] gi|304381219|ref|ZP_07363872.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|81651279|sp|Q6GHL7|RLMN_STAAR RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|81694662|sp|Q5HGL4|RLMN_STAAC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|81705804|sp|Q7A600|RLMN_STAAN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|81781713|sp|Q99UQ0|RLMN_STAAM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123098046|sp|Q2FZ66|RLMN_STAA8 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123763308|sp|Q2FHM0|RLMN_STAA3 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829891|sp|A7X1H8|RLMN_STAA1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829892|sp|A6U137|RLMN_STAA2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829893|sp|A5ISA3|RLMN_STAA9 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829894|sp|A6QGB8|RLMN_STAAE RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829895|sp|A8Z3Q4|RLMN_STAAT RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|13701018|dbj|BAB42313.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] gi|14246988|dbj|BAB57380.1| similar to Fe-S-cluster redox enzyme [Staphylococcus aureus subsp. aureus Mu50] gi|49241510|emb|CAG40196.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MRSA252] gi|57285973|gb|AAW38067.1| conserved hypothetical protein TIGR00048 [Staphylococcus aureus subsp. aureus COL] gi|87126321|gb|ABD20835.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202482|gb|ABD30292.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740778|gb|ABQ49076.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus JH9] gi|149946219|gb|ABR52155.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus JH1] gi|150374140|dbj|BAF67400.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156721674|dbj|BAF78091.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|160368199|gb|ABX29170.1| possible Fe-S-cluster redox enzyme [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724434|gb|EES93163.1| Fe-S-cluster redox enzyme [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728598|gb|EES97327.1| Fe-S-cluster redox enzyme [Staphylococcus aureus subsp. aureus TCH130] gi|257271728|gb|EEV03866.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus 55/2053] gi|257274772|gb|EEV06259.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus 65-1322] gi|257278692|gb|EEV09311.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus subsp. aureus 68-397] gi|257281418|gb|EEV11555.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus subsp. aureus E1410] gi|257284449|gb|EEV14569.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus M876] gi|257789698|gb|EEV28038.1| cfr family radical SAM enzyme [Staphylococcus aureus A9781] gi|257839286|gb|EEV63760.1| ribosomal large subunit methyltransferase N [Staphylococcus aureus A9763] gi|257844282|gb|EEV68664.1| cfr family radical SAM enzyme [Staphylococcus aureus A9719] gi|257845971|gb|EEV69999.1| cfr family radical SAM enzyme [Staphylococcus aureus A9635] gi|257847998|gb|EEV71991.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus A9299] gi|257850048|gb|EEV74001.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus A8115] gi|257853803|gb|EEV76762.1| cfr family radical SAM enzyme [Staphylococcus aureus A6300] gi|257857442|gb|EEV80340.1| cfr family radical SAM enzyme [Staphylococcus aureus A6224] gi|257859733|gb|EEV82575.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus A5948] gi|257863216|gb|EEV85980.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus A5937] gi|259160251|gb|EEW45279.1| hypothetical protein SA930_1400 [Staphylococcus aureus 930918-3] gi|262075123|gb|ACY11096.1| hypothetical protein SAAV_1190 [Staphylococcus aureus subsp. aureus ED98] gi|269940710|emb|CBI49091.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus subsp. aureus TW20] gi|282314010|gb|EFB44402.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus C101] gi|282316725|gb|EFB47099.1| radical SAM enzyme, Cfr family protein [Staphylococcus aureus subsp. aureus C427] gi|282319907|gb|EFB50255.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus D139] gi|282322061|gb|EFB52385.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus M899] gi|282325395|gb|EFB55704.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus subsp. aureus WBG10049] gi|282327573|gb|EFB57856.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330827|gb|EFB60341.1| radical SAM enzyme Cfr family protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282590561|gb|EFB95638.1| cfr family radical SAM enzyme [Staphylococcus aureus A10102] gi|282594716|gb|EFB99700.1| cfr family radical SAM enzyme [Staphylococcus aureus A9765] gi|282595389|gb|EFC00353.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus C160] gi|282764701|gb|EFC04826.1| cfr family radical SAM enzyme [Staphylococcus aureus A8117] gi|283460426|gb|EFC07516.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus subsp. aureus H19] gi|283470430|emb|CAQ49641.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus ST398] gi|283790108|gb|EFC28925.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus A017934/97] gi|285816900|gb|ADC37387.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus 04-02981] gi|290920645|gb|EFD97708.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus M1015] gi|291096031|gb|EFE26292.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus 58-424] gi|291466929|gb|EFF09447.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus M809] gi|294825011|gb|EFG41433.1| cfr family radical SAM enzyme [Staphylococcus aureus A9754] gi|294968009|gb|EFG44037.1| LOW QUALITY PROTEIN: cfr family radical SAM enzyme [Staphylococcus aureus A8819] gi|295128061|gb|EFG57695.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus EMRSA16] gi|297177122|gb|EFH36376.1| cfr family radical SAM enzyme [Staphylococcus aureus A8796] gi|297576224|gb|EFH94940.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus MN8] gi|298694511|gb|ADI97733.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ED133] gi|302332822|gb|ADL23015.1| Ribosomal RNA large subunit methyltransferase N, Rlmn [Staphylococcus aureus subsp. aureus JKD6159] gi|302751041|gb|ADL65218.1| Ribosomal RNA large subunit methyltransferase N, Rlmn [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340202|gb|EFM06143.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312438405|gb|ADQ77476.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus TCH60] gi|312829612|emb|CBX34454.1| radical SAM superfamily protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315131009|gb|EFT86993.1| possible Fe-S-cluster redox enzyme [Staphylococcus aureus subsp. aureus CGS03] gi|315194104|gb|EFU24497.1| possible Fe-S-cluster redox enzyme [Staphylococcus aureus subsp. aureus CGS00] gi|315198455|gb|EFU28784.1| possible Fe-S-cluster redox enzyme [Staphylococcus aureus subsp. aureus CGS01] gi|320140967|gb|EFW32814.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus MRSA131] gi|320144318|gb|EFW36084.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus MRSA177] gi|323442309|gb|EGA99939.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus O46] gi|329313887|gb|AEB88300.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus subsp. aureus T0131] gi|329724771|gb|EGG61276.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp. aureus 21189] gi|329727514|gb|EGG63970.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp. aureus 21172] gi|329728784|gb|EGG65205.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp. aureus 21193] Length = 364 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 127/371 (34%), Positives = 208/371 (56%), Gaps = 25/371 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 K+S+ + +E++ L++ G + R QI++W+Y + + M+++S+++R L Sbjct: 16 FDKQSIYSLRFDEMQNWLVEQG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKDLRQL 71 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +F++ V ++ S DGT K+L + IETV + ++CV++QVG Sbjct: 72 LKDNFTVTTLTTVVKQESKDGTIKFLFE-----LQDGYTIETVLMRHDYGNSVCVTTQVG 126 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C+FC + L RNL A EI+ QVL + L + ++S IV Sbjct: 127 CRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKAL--------------DATEERVSQIV 172 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+D + L I +D L+ R IT+STSG +P I +E I + A+S Sbjct: 173 IMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFADEDIQINFAVS 232 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +++R+ L+PINR Y +E LI+A ++Y +N RR+TFEY + G+ND A L Sbjct: 233 LHAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTN-RRVTFEYGLFGGVNDQLEHAREL 291 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++KG+ +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AAC Sbjct: 292 AHLIKGLNCHVNLIPVNHVPERNYVKTAKNDIFKFEKELKRLGINATIRREQGSDIDAAC 351 Query: 363 GQLKSLSKRIP 373 GQL++ +++ Sbjct: 352 GQLRAKERQVE 362 >gi|188995920|ref|YP_001930172.1| hypothetical protein PGN_2057 [Porphyromonas gingivalis ATCC 33277] gi|259491992|sp|B2RMI0|RLMN_PORG3 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|188595600|dbj|BAG34575.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC 33277] Length = 352 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 141/363 (38%), Positives = 196/363 (53%), Gaps = 30/363 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK L+GM EEL L++G+P R Q+ +WIYVR DF M++ISQ R L Sbjct: 9 KKVVLLGMSLEELTTVALRMGMP----RFAGKQLAEWIYVRRATDFAEMTNISQANRQKL 64 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + + + D + S DGT+K+L FP +G +E+V IPE R TLC+SSQVGC Sbjct: 65 AEIYDLGRYPWSDVQCSVDGTKKYL--FP---VGEGRFVESVLIPEGDRATLCISSQVGC 119 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG Q NL+A EIL Q+ F E E ++N+V Sbjct: 120 KMDCLFCMTGKQGWNGNLSAAEILNQI---------FSVDEAAE----------LTNLVY 160 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N D V +S+ ++ G+ +S +RIT+ST G + R E LA+SLH Sbjct: 161 MGMGEPLDNTDEVLRSIEALTEPWGMGWSPKRITVSTIG-AKGLERFLAESRCHLAVSLH 219 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 + + R L+P + +P+ +D R Y S RR++FEY++ G+ND R A L Sbjct: 220 SPFPEERRKLMPGEKAFPIMQTLDRIRAYD-FSGQRRVSFEYIVFDGLNDDMRHADELAA 278 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 IL+GIP +INLI F+ P SD + F + ++ GY+ IR RG DI AACG Sbjct: 279 ILRGIPCRINLIRFHKIPAVSLRSSDTARMEAFRKRMESHGYTCTIRASRGEDIFAACGM 338 Query: 365 LKS 367 L + Sbjct: 339 LST 341 >gi|327489556|gb|EGF21349.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1058] Length = 362 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 133/368 (36%), Positives = 213/368 (57%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+E+ ++ Q + R SQIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQEM----IEWAEAQGEKKFRASQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI+ Q++L + D G ++ ++S+IV Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+S Sbjct: 159 VMGIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +NDLR ++ INR +P+E L A +Y +N RR+TFEY+ML +ND +A L Sbjct: 219 LHAPNNDLRTSIMRINRSFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEEAKEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++LK I + +NLIP+NP +Y S ++ ++ F + +K++G + +R G DI Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|149277498|ref|ZP_01883639.1| hypothetical protein PBAL39_04903 [Pedobacter sp. BAL39] gi|149231731|gb|EDM37109.1| hypothetical protein PBAL39_04903 [Pedobacter sp. BAL39] Length = 349 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 128/334 (38%), Positives = 188/334 (56%), Gaps = 22/334 (6%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93 R Q+++W++ + R F MS++S+++R L++H++I E+ + + S D T K R Sbjct: 30 RAKQVYQWLWEKSARTFDEMSNLSKDLRKKLDEHYAINVVEVNNSQFSNDHTIKNAFRLY 89 Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153 I +E V IP R T CVSSQVGCSLTC FC TG RNL A+EI QV+L Sbjct: 90 DGNI-----VEGVLIPMDDRMTACVSSQVGCSLTCKFCATGYMDRKRNLNADEIYDQVVL 144 Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213 I+ + ++NIV MGMGEPL N+ NV KS+ + GL+ S Sbjct: 145 -------------IDQQAKKNYNAPLTNIVYMGMGEPLLNYANVMKSIERITAPDGLNMS 191 Query: 214 KRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 +RIT+ST+G I ++G++ LA+SLHA ++ RN ++PIN L+ L +A ++ Sbjct: 192 YKRITVSTAGISKMIKKLGDDGAKFNLALSLHAANDKKRNEIMPINEHNSLKALEEALKY 251 Query: 273 YPGLSNARR-ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 Y S + IT+EY++ ND DA+ L K K +P K+NLI +NP +++ + Sbjct: 252 Y--FSKTKNPITYEYIVFNDFNDEIEDAMELAKFCKHVPCKVNLIEYNPIQFADFINAQG 309 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I FS +K G ++ IR RG DI AACGQL Sbjct: 310 DKIDAFSNYLKSQGVNTNIRRSRGKDIDAACGQL 343 >gi|311029975|ref|ZP_07708065.1| ribosomal RNA large subunit methyltransferase N [Bacillus sp. m3-13] Length = 363 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 124/368 (33%), Positives = 210/368 (57%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K S+ + ELEE LL IG + RT+QI++W+Y + + F+ MS++S+ +R L Sbjct: 16 RKPSIYSLQLHELEEWLLSIG----EKKFRTTQIFEWLYQKRVTSFEEMSNLSKSLRDKL 71 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + +++ + + ++ S DGT K+L + IETV + + ++CV++QVGC Sbjct: 72 EETYALTTLKTIVQQTSSDGTMKFLFE-----LHDGYSIETVLMKHEYGNSVCVTTQVGC 126 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + + ++S++V+ Sbjct: 127 RIGCTFCASTLGGLKRNLEAGEIVAQVVKVQQALDE--------------MDERVSHVVI 172 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP NFD + L I + L+ R IT+STSG +P I + +E + + A+SL Sbjct: 173 MGIGEPFDNFDEMLDFLKIINHDQALNIGARHITVSTSGIIPKIYKFADENMQINFAVSL 232 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA + ++R+ L+PINR Y L L+++ R+Y RR++FEY + G+ND A L Sbjct: 233 HAPNTEIRSRLMPINRAYKLPDLMESIRYYIN-KTGRRVSFEYGLFGGVNDQVEHAEELA 291 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LKG+ +NLIP N P +Y+ + ++ I F + +K G + +R +G DI AACG Sbjct: 292 QLLKGMKCHVNLIPVNYVPERDYVRTPKEQINLFEKTLKNLGVNVTVRREQGHDIDAACG 351 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 352 QLRAKERK 359 >gi|15615069|ref|NP_243372.1| hypothetical protein BH2506 [Bacillus halodurans C-125] gi|81786443|sp|Q9K9Y8|RLMN_BACHD RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|10175126|dbj|BAB06225.1| BH2506 [Bacillus halodurans C-125] Length = 362 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 129/365 (35%), Positives = 204/365 (55%), Gaps = 25/365 (6%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 S+ + EELE L + G P + R +QI++W+Y + ++ FQ M+++S+++R L +H Sbjct: 18 SIYTLQFEELEMWLKEQGEP----KFRATQIFEWLYEKRVKQFQEMTNLSKDLRAKLEKH 73 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F++ + V ++ S DGT K+L + IETV + ++CV++QVGC L Sbjct: 74 FNLTTLKTVTKQQSSDGTIKFLFE-----LHDGYSIETVVMRHNYGNSVCVTTQVGCRLG 128 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C+FC + L RNL A EI+ QV+ A+ + + G ++ +IV+MG+ Sbjct: 129 CTFCASTLGGLKRNLEAGEIVAQVVEAQRAMDE--------------QGERVGSIVVMGI 174 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 GEP N+ + L + GL+ R IT+STSG VP I + +E + + AISLHA Sbjct: 175 GEPFDNYQALMPFLKTVNHDKGLNIGARHITVSTSGVVPKIYQFADEGLQINFAISLHAP 234 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 + +LR+ L+P+NR +PL L+DA R+Y RR+TFEY + G ND A L ++ Sbjct: 235 NTELRSKLMPVNRAWPLPKLMDAIRYYID-KTGRRVTFEYGLFGGENDQVEHAEELADLI 293 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 K I +NLIP N P +Y+ + + I F +K G + IR +G DI AACGQL+ Sbjct: 294 KDIKCHVNLIPVNYVPERDYVRTPRDQIFAFERTLKERGVNVTIRREQGHDIDAACGQLR 353 Query: 367 SLSKR 371 + ++ Sbjct: 354 AKERK 358 >gi|295706329|ref|YP_003599404.1| radical SAM enzyme, Cfr family [Bacillus megaterium DSM 319] gi|294803988|gb|ADF41054.1| radical SAM enzyme, Cfr family [Bacillus megaterium DSM 319] Length = 363 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 126/368 (34%), Positives = 206/368 (55%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K S+ + +LE L++ G + R QI+ W+YV+ + DF MS++S+ +R L Sbjct: 16 QKPSIYSLEMHDLENWLVEHGDK----KFRAKQIFDWLYVKRVTDFDDMSNLSKGLREQL 71 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 F++ + V ++ S DGT K+L + IETV + + ++CV++QVGC Sbjct: 72 KDKFALTTLKTVVQQTSGDGTMKFLFE-----LHDGYTIETVLMRHEYGNSVCVTTQVGC 126 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + G ++S++V+ Sbjct: 127 RIGCTFCASTLGGLKRNLEAGEIVAQVVKVQKALDE--------------QGERVSSVVI 172 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+D + + L + GL+ R IT+STSG +P I + +E + + AISL Sbjct: 173 MGIGEPFDNYDEMMRFLKTINSDDGLNIGARHITVSTSGIIPKIYKFADEKMQINFAISL 232 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +ND+R+ L+PINR Y L L++A ++Y RRI+FEY + G+ND A L Sbjct: 233 HAPNNDIRSRLMPINRAYKLPDLMEAIKYYTD-KTGRRISFEYGLFGGVNDQVEHAEELA 291 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++K + +NLIP N P +Y+ + ++ I F +K+ G + IR +G DI AACG Sbjct: 292 DLIKDVKCHVNLIPVNYVPERDYVRTPREQIFAFERTLKKRGVNVTIRREQGHDIDAACG 351 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 352 QLRAKERK 359 >gi|160933496|ref|ZP_02080884.1| hypothetical protein CLOLEP_02342 [Clostridium leptum DSM 753] gi|156867373|gb|EDO60745.1| hypothetical protein CLOLEP_02342 [Clostridium leptum DSM 753] Length = 359 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 133/365 (36%), Positives = 205/365 (56%), Gaps = 32/365 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K+ + M +EL + G P + QI++W++ RG+ F+ M+D+S+ VR L Sbjct: 7 QKKDIKSMTLDELRADMKIQGQPS----YKALQIYRWLH-RGVSSFEEMTDLSKIVRQFL 61 Query: 65 NQHFSIIYPEIVDEKIS-CDGTRKWLLRFP-ARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + + I + ++ +S D T K+L F +C+ E V + + ++C+S+QV Sbjct: 62 TEKYYISVARVENKLVSDYDNTIKYLFSFADGQCV------EAVLMEYQHGRSICISTQV 115 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C+FC TG RNLTA E+L QV A+ G +ISNI Sbjct: 116 GCKMGCTFCATGLGGFQRNLTASEMLSQVQAAQ-----------------KDAGVRISNI 158 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 V+MGMGEPL N++ V + L + S G++ R I+LST G V I + EE + + L++ Sbjct: 159 VLMGMGEPLDNYNQVIRFLRLVSSQEGMNLGMRHISLSTCGLVDRIYDLAEENLQLTLSV 218 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA +N +R+ +P+NRKYP+E L+ ACR+Y G + RRI+FEY M+ G+NDS A Sbjct: 219 SLHAPNNAIRSRTMPVNRKYPIEELLKACRYYAGRT-GRRISFEYAMIDGVNDSDGCAKE 277 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L LKG+ +NLIP NP Y S ++ F ++R+G ++ +R G DI A+ Sbjct: 278 LAARLKGMLCHVNLIPVNPVREAGYQKSGRERQQAFIRILERAGITATVRRTLGADINAS 337 Query: 362 CGQLK 366 CGQL+ Sbjct: 338 CGQLR 342 >gi|265762562|ref|ZP_06091130.1| ribosomal RNA large subunit methyltransferase N [Bacteroides sp. 2_1_16] gi|263255170|gb|EEZ26516.1| ribosomal RNA large subunit methyltransferase N [Bacteroides sp. 2_1_16] Length = 344 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 131/362 (36%), Positives = 195/362 (53%), Gaps = 29/362 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K L+GM EL+ +G+P + QI W+Y + + M+++S + R LL Sbjct: 3 KYPLLGMTLTELQSVTKDLGMPAFAAK----QIASWLYDKKVTSIDEMTNLSLKHRELLK 58 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + VDE S DGT K+L + +E VYIP++ R TLCVSSQVGC Sbjct: 59 GEYDLGISAPVDEMRSVDGTVKYLYQVSDNHF-----VEAVYIPDEDRATLCVSSQVGCK 113 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q +LTA +IL Q+ +P K++N+VMM Sbjct: 114 MNCKFCMTGKQGFTASLTANQILNQI------------------AALPERD-KLTNVVMM 154 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N D V K+L I + S G +S +RITLS+ G + R EE LAISLH+ Sbjct: 155 GMGEPLDNLDEVLKALHILTASYGYGWSPKRITLSSVGLRKGLQRFIEESECHLAISLHS 214 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 R+ L+P R + ++ ++D ++Y S RR++FEY++ KG+NDS A L+K+ Sbjct: 215 PFPSQRSELMPAERAFSIKEMVDLLKNYD-FSKQRRLSFEYIVFKGVNDSLIYAKELLKL 273 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G+ ++NLI F+ PG + + + + +F + + G + IR RG DI AACG L Sbjct: 274 LRGLDCRVNLIRFHAIPGVDLEGTGMETMTSFRDYLTSHGLFTTIRASRGEDIFAACGML 333 Query: 366 KS 367 + Sbjct: 334 ST 335 >gi|53712370|ref|YP_098362.1| ribosomal RNA large subunit methyltransferase N [Bacteroides fragilis YCH46] gi|81383319|sp|Q64XE8|RLMN_BACFR RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|52215235|dbj|BAD47828.1| conserved hypothetical protein [Bacteroides fragilis YCH46] Length = 344 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 131/362 (36%), Positives = 195/362 (53%), Gaps = 29/362 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K L+GM EL+ +G+P + QI W+Y + + M+++S + R LL Sbjct: 3 KYPLLGMTLTELQSVTKDLGMPAFAAK----QIASWLYDKKVTSIDEMTNLSLKHRELLK 58 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + VDE S DGT K+L + +E VYIP++ R TLCVSSQVGC Sbjct: 59 GEYDLGISAPVDEMRSVDGTVKYLYQVSDNHF-----VEAVYIPDEDRATLCVSSQVGCK 113 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q +LTA +IL Q+ +P K++N+VMM Sbjct: 114 MNCKFCMTGKQGFTASLTANQILNQI------------------AALPEWD-KLTNVVMM 154 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N D V K+L I + S G +S +RITLS+ G + R EE LAISLH+ Sbjct: 155 GMGEPLDNLDEVLKALHILTASYGYGWSPKRITLSSVGLRKGLQRFIEESECHLAISLHS 214 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 R+ L+P R + ++ ++D ++Y S RR++FEY++ KG+NDS A L+K+ Sbjct: 215 PFPSQRSELMPAERAFSIKEMVDLLKNYD-FSKQRRLSFEYIVFKGVNDSLIYAKELLKL 273 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G+ ++NLI F+ PG + + + + +F + + G + IR RG DI AACG L Sbjct: 274 LRGLDCRVNLIRFHAIPGVDLEGAGMETMTSFRDYLTSHGLFTTIRASRGEDIFAACGML 333 Query: 366 KS 367 + Sbjct: 334 ST 335 >gi|60680539|ref|YP_210683.1| ribosomal RNA large subunit methyltransferase N [Bacteroides fragilis NCTC 9343] gi|253563593|ref|ZP_04841050.1| ribosomal RNA large subunit methyltransferase N [Bacteroides sp. 3_2_5] gi|81316392|sp|Q5LGK5|RLMN_BACFN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|60491973|emb|CAH06734.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343] gi|251947369|gb|EES87651.1| ribosomal RNA large subunit methyltransferase N [Bacteroides sp. 3_2_5] Length = 344 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 131/362 (36%), Positives = 195/362 (53%), Gaps = 29/362 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K L+GM EL+ +G+P + QI W+Y + + M+++S + R LL Sbjct: 3 KYPLLGMTLTELQSVTKDLGMPAFAAK----QIASWLYDKKVTSIDEMTNLSLKHRELLK 58 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + VDE S DGT K+L + +E VYIP++ R TLCVSSQVGC Sbjct: 59 GEYDLGISAPVDEMRSVDGTVKYLYQVSDNHF-----VEAVYIPDEDRATLCVSSQVGCK 113 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q +LTA +IL Q+ +P K++N+VMM Sbjct: 114 MNCKFCMTGKQGFTASLTANQILNQI------------------AALPERD-KLTNVVMM 154 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N D V K+L I + S G +S +RITLS+ G + R EE LAISLH+ Sbjct: 155 GMGEPLDNLDEVLKALHILTASYGYGWSPKRITLSSVGLRKGLQRFIEESECHLAISLHS 214 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 R+ L+P R + ++ ++D ++Y S RR++FEY++ KG+NDS A L+K+ Sbjct: 215 PFPSQRSELMPAERAFSIKEMVDLLKNYD-FSKQRRLSFEYIVFKGVNDSLIYAKELLKL 273 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G+ ++NLI F+ PG + + + + +F + + G + IR RG DI AACG L Sbjct: 274 LRGLDCRVNLIRFHAIPGVDLEGAGMETMTSFRDYLTSHGLFTTIRASRGEDIFAACGML 333 Query: 366 KS 367 + Sbjct: 334 ST 335 >gi|255657702|ref|ZP_05403111.1| radical SAM enzyme, Cfr family [Mitsuokella multacida DSM 20544] gi|260849890|gb|EEX69897.1| radical SAM enzyme, Cfr family [Mitsuokella multacida DSM 20544] Length = 347 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 133/363 (36%), Positives = 200/363 (55%), Gaps = 24/363 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + + G+ EEL+EAL +P + R QI +W+Y RG F M+++S+++R L+ Sbjct: 2 KDIFGLTVEELQEALQPFSLP----KYRARQIAEWMYQRGATGFADMTNLSKKLREELSG 57 Query: 67 HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F I P+ D S DG T K+LL F +ETV + + ++CVS+Q GC+ Sbjct: 58 AFVIGRPKCKDRLDSSDGHTTKFLLEFT-----DGTAVETVLMRQPYGNSICVSTQAGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC + + RNLT EIL Q ++ +L EG G K+ +V+M Sbjct: 113 MGCAFCASTLHGMARNLTTGEILSQAIVISDML-------RAEGQ-----GEKVDTVVIM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G GEPL N++NV + + + L S R ITLSTSG VP + ++ EE I + L++SLH Sbjct: 161 GSGEPLMNYENVLGFIRLLHEDYVLGLSYRSITLSTSGIVPQMYKLAEEGIPISLSVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +LR+ L+PINRKYPL ++ A RHY ++ RR+T+EY+++ +ND A L+ Sbjct: 221 APEQELRSTLMPINRKYPLVDVVRAARHYAEVTK-RRVTYEYILIDRVNDGEEQARELVS 279 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L+G A +NLIP NP L I F + + +R G DI AACGQ Sbjct: 280 LLRGQLASVNLIPINPVAERHLLRPSAARIDWFEHYLTAHHINVTVRREMGTDIQAACGQ 339 Query: 365 LKS 367 L++ Sbjct: 340 LRN 342 >gi|125973091|ref|YP_001037001.1| radical SAM protein [Clostridium thermocellum ATCC 27405] gi|256004594|ref|ZP_05429572.1| radical SAM enzyme, Cfr family [Clostridium thermocellum DSM 2360] gi|281417286|ref|ZP_06248306.1| radical SAM enzyme, Cfr family [Clostridium thermocellum JW20] gi|205829739|sp|A3DCX9|RLMN_CLOTH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|125713316|gb|ABN51808.1| 23S rRNA m(2)A-2503 methyltransferase [Clostridium thermocellum ATCC 27405] gi|255991466|gb|EEU01570.1| radical SAM enzyme, Cfr family [Clostridium thermocellum DSM 2360] gi|281408688|gb|EFB38946.1| radical SAM enzyme, Cfr family [Clostridium thermocellum JW20] gi|316940688|gb|ADU74722.1| radical SAM enzyme, Cfr family [Clostridium thermocellum DSM 1313] Length = 349 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 132/363 (36%), Positives = 207/363 (57%), Gaps = 30/363 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K L+ M EELE + ++G + R QI++W +GI+D M+++S+++R L Sbjct: 4 KADLLSMTIEELENLMAEMG----EQKFRAKQIFQWTN-KGIKDIDAMTNLSKDLREKLK 58 Query: 66 QHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I E++ + +S DGT K+L + I IE+V + + C+SSQVGC Sbjct: 59 ERAYINRLEVIKKFVSKIDGTIKYLFKLNDGNI-----IESVLMQYLHGYSACISSQVGC 113 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC + VRNLT E+L Q+L ++ +I N+V+ Sbjct: 114 KMGCKFCASTGVGFVRNLTPGEMLDQILTIQN-----------------DTKNRIGNVVI 156 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEPL N++NV K L + + G++ R I++ST G VP I R+ EE I V L+ISL Sbjct: 157 MGIGEPLDNYENVVKFLRLVNHKDGINLGARHISVSTCGLVPEILRLAEEKIPVTLSISL 216 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA ++++R ++PIN++Y ++ +I+AC+ Y +N RRITFEY M+ G+NDS +AL L Sbjct: 217 HAPNDEIREKIMPINKRYSIDKIIEACKIYTETTN-RRITFEYAMIDGLNDSKENALELA 275 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K ++G+ +NLIP N + S ++ I F E ++R G + +R G DI AACG Sbjct: 276 KRIRGMLCHVNLIPVNTVSDTGFKRSSREKITAFKEILERFGVETTVRRELGSDINAACG 335 Query: 364 QLK 366 QL+ Sbjct: 336 QLR 338 >gi|323352763|ref|ZP_08087733.1| cfr family radical SAM enzyme [Streptococcus sanguinis VMC66] gi|322121799|gb|EFX93545.1| cfr family radical SAM enzyme [Streptococcus sanguinis VMC66] Length = 362 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 133/368 (36%), Positives = 212/368 (57%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+E+ ++ Q + R SQIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQEM----IEWAEAQGEKKFRASQIWEWLYRKRVQSFEEMTNLSKDLIARLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI+ Q++L + D G ++ ++S+IV Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+S Sbjct: 159 VMGIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +NDLR ++ INR +P+E L A +Y +N RR+TFEY+ML +ND A L Sbjct: 219 LHAPNNDLRTSIMRINRSFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQAKEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++LK I + +NLIP+NP +Y S ++ ++ F + +K++G + +R G DI Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKTGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|298384050|ref|ZP_06993611.1| radical SAM enzyme, Cfr family [Bacteroides sp. 1_1_14] gi|298263654|gb|EFI06517.1| radical SAM enzyme, Cfr family [Bacteroides sp. 1_1_14] Length = 345 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 131/364 (35%), Positives = 199/364 (54%), Gaps = 29/364 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K L+GM EL+ + ++G+P QI W+Y + + M+++S + R L Sbjct: 2 MSKYPLLGMTLIELQSLVKRLGMPG----FAAKQIASWLYDKKVTSIDEMTNLSLKYREL 57 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L Q++ + V+E S DGT K+L +P +G +E+VYIP+ R TLC+SSQVG Sbjct: 58 LKQNYEVGAEAPVEEMRSVDGTVKYL--YP---VGENHFVESVYIPDDERATLCISSQVG 112 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG Q NLTA +I+ Q+ +P K++N+V Sbjct: 113 CKMNCKFCMTGKQGYSANLTAHQIINQI------------------HSLPERD-KLTNVV 153 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N + V K+L I + S G ++S +RIT+ST G + R EE LAISL Sbjct: 154 MMGMGEPLDNLEEVLKALDILTGSYGYAWSPKRITVSTVGLRKGLRRFIEESDCHLAISL 213 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ R L+P + + + +++ ++Y S RR++FEY++ KG+NDS A L+ Sbjct: 214 HSPVTAQRAELMPAEKAFSITEMVELLKNYD-FSKQRRLSFEYIVFKGLNDSQVYAKELL 272 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+L+G+ +INLI F+ PG +D + F + + G + IR RG DI AACG Sbjct: 273 KLLRGLDCRINLIRFHSIPGVALEGADMDTMTRFRDYLTTHGLFTTIRASRGEDIFAACG 332 Query: 364 QLKS 367 L + Sbjct: 333 MLST 336 >gi|260889579|ref|ZP_05900842.1| radical SAM enzyme, Cfr family [Leptotrichia hofstadii F0254] gi|260860990|gb|EEX75490.1| radical SAM enzyme, Cfr family [Leptotrichia hofstadii F0254] Length = 365 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 132/369 (35%), Positives = 203/369 (55%), Gaps = 26/369 (7%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 +N ++K ++GM E L++ ++IG+ + SQ++ W++ + + DF S+IS++ Sbjct: 11 INTIEKIDILGMDLESLQKKFVEIGLK----KFNASQVFDWLHNKLVFDFDEFSNISKKD 66 Query: 61 RHLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119 R +L + F + E ++S DG T K+L R + IE+V I K+R TLCVS Sbjct: 67 REILKERFYVAKLEFKTHQVSEDGDTEKFLFELKDRRL-----IESVLISHKNRHTLCVS 121 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 SQ+GC + C FC T T RNL+ EILLQ + L G K+ Sbjct: 122 SQIGCLIGCDFCATATMTYERNLSISEILLQYYYVQKHL--------------LQRGEKL 167 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVM 238 N+V MGMGEP N+D V S+++ + G +FSKR T+STSG V I R E E + Sbjct: 168 GNVVYMGMGEPFLNYDAVLGSINMLNSPKGQNFSKRNFTISTSGIVNGIKRFTENENQIN 227 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LAISLH+V +D+R+ ++PIN+++ ++ L ++ Y + RITFEY+++ +N P D Sbjct: 228 LAISLHSVKDDVRSEIMPINKRWGVKQLKESLLEYQKQT-KNRITFEYILIDDLNCEPED 286 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L L +NLIP+NP G Y ++ F + +K + +R +G DI Sbjct: 287 ARELAGFLNSFSCLVNLIPYNPVGGKPYKRPSKQKQREFYKLLKDKNVNVTLRETKGQDI 346 Query: 359 LAACGQLKS 367 AACGQLK+ Sbjct: 347 AAACGQLKA 355 >gi|327469049|gb|EGF14521.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK330] Length = 362 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 132/368 (35%), Positives = 213/368 (57%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+E+ ++ Q + R +QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQEM----IEWAEAQGEKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F++ + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DQFAVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI+ Q++L + D G ++ ++S+IV Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+S Sbjct: 159 VMGIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +NDLR ++ INR +P+E L A +Y +N RR+TFEY+ML +ND A L Sbjct: 219 LHAPNNDLRTSIMRINRSFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQAKEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++LK I + +NLIP+NP +Y S ++ ++ F + +K++G + +R G DI Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|82750822|ref|YP_416563.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus RF122] gi|123768547|sp|Q2YXJ8|RLMN_STAAB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|82656353|emb|CAI80771.1| conserved hypothetical protein [Staphylococcus aureus RF122] Length = 364 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 127/371 (34%), Positives = 208/371 (56%), Gaps = 25/371 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 K+S+ + +E++ L++ G + R QI++W+Y + + M+++S+++R L Sbjct: 16 FDKQSIYSLRFDEMQNWLVEQG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKDLRQL 71 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +F++ V ++ S DGT K+L + IETV + ++CV++QVG Sbjct: 72 LKDNFTVTTLTTVVKQESKDGTIKFLFE-----LQDGYTIETVLMRHDYGNSVCVTTQVG 126 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C+FC + L RNL A EI+ QVL + L + ++S IV Sbjct: 127 CRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKAL--------------DATEERVSQIV 172 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+D + L I +D L+ R IT+STSG +P I +E I + A+S Sbjct: 173 IMGIGEPFENYDEMMGFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFADEDIQINFAVS 232 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +++R+ L+PINR Y +E LI+A ++Y +N RR+TFEY + G+ND A L Sbjct: 233 LHAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTN-RRVTFEYGLFGGVNDQLEHAREL 291 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++KG+ +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AAC Sbjct: 292 AHLIKGLNCHVNLIPVNHVPERNYVKTAKNDIFKFEKELKRLGINATIRREQGSDIDAAC 351 Query: 363 GQLKSLSKRIP 373 GQL++ +++ Sbjct: 352 GQLRAKERQVE 362 >gi|223043733|ref|ZP_03613776.1| radical SAM enzyme, Cfr family [Staphylococcus capitis SK14] gi|222442830|gb|EEE48932.1| radical SAM enzyme, Cfr family [Staphylococcus capitis SK14] Length = 364 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 124/371 (33%), Positives = 208/371 (56%), Gaps = 25/371 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 K+S+ + +E+++ L+ G + R QI++W+Y + + M+++S+++R + Sbjct: 16 FDKQSIYSLRYDEMQQWLIDHG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKDLRQV 71 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +F++ V ++ S DGT K+L + IETV + + ++CV++QVG Sbjct: 72 LKDNFAMTTLTTVVKQESKDGTIKFLFE-----LQDGYTIETVLMRHEYGNSVCVTTQVG 126 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C+FC + L RNL A EI+ QVL + L + ++S IV Sbjct: 127 CRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TDERVSQIV 172 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+D + L I +D L+ R IT+STSG +P I EE I + A+S Sbjct: 173 IMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVS 232 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LH +++R+ L+PINR Y +E L++A ++Y +N RR+TFEY + G+ND A +L Sbjct: 233 LHGAKDEIRSRLMPINRAYNVEKLMEAIKYYQEQTN-RRVTFEYGLFGGVNDQLEHARDL 291 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++K + +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AAC Sbjct: 292 AHLIKNLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAAC 351 Query: 363 GQLKSLSKRIP 373 GQL++ +++ Sbjct: 352 GQLRAKERQVE 362 >gi|301162076|emb|CBW21620.1| conserved hypothetical protein [Bacteroides fragilis 638R] Length = 344 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 131/362 (36%), Positives = 194/362 (53%), Gaps = 29/362 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K L+GM EL+ +G+P QI W+Y + + M+++S + R LL Sbjct: 3 KYPLLGMTLTELQSVTKDLGMPA----FAAKQIASWLYDKKVTSIDEMTNLSLKHRELLK 58 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + VDE S DGT K+L + +E VYIP++ R TLCVSSQVGC Sbjct: 59 GEYDLGISAPVDEMRSVDGTVKYLYQVSDNHF-----VEAVYIPDEDRATLCVSSQVGCK 113 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q +LTA +IL Q+ +P K++N+VMM Sbjct: 114 MNCKFCMTGKQGFTASLTANQILNQI------------------AALPERD-KLTNVVMM 154 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N D V K+L I + S G +S +RITLS+ G + R EE LAISLH+ Sbjct: 155 GMGEPLDNLDEVLKALHILTASYGYGWSPKRITLSSVGLRKGLQRFIEESECHLAISLHS 214 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 R+ L+P R + ++ ++D ++Y S RR++FEY++ KG+NDS A L+K+ Sbjct: 215 PFPSQRSELMPAERAFSIKEMVDLLKNYD-FSKQRRLSFEYIVFKGVNDSLIYAKELLKL 273 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G+ ++NLI F+ PG + + + + +F + + G + IR RG DI AACG L Sbjct: 274 LRGLDCRVNLIRFHAIPGVDLEGAGMEAMTSFRDYLTSHGLFTTIRASRGEDIFAACGML 333 Query: 366 KS 367 + Sbjct: 334 ST 335 >gi|154250366|ref|YP_001411191.1| ribosomal RNA large subunit methyltransferase N [Fervidobacterium nodosum Rt17-B1] gi|205829758|sp|A7HNQ1|RLMN_FERNB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|154154302|gb|ABS61534.1| radical SAM enzyme, Cfr family [Fervidobacterium nodosum Rt17-B1] Length = 348 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 134/368 (36%), Positives = 206/368 (55%), Gaps = 36/368 (9%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 +++++ EEL + KIG+ + R Q+W WIY + DF M+++S+E R+ L+ Sbjct: 2 RKNILDFSYEELVDEFSKIGLE----KFRVDQVWDWIYKKHEFDFDKMTNLSKEHRNTLS 57 Query: 66 QHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I PE++D +IS D T K+L + + IE+V + R T C+S+QVGC Sbjct: 58 ERFYIYVPELLDMQISQIDKTTKFLWK-----LEDDNTIESVLLFHPDRVTACISTQVGC 112 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS--NI 182 C+FC TG VRNL+A EI+ Q++ RK++ NI Sbjct: 113 PAKCAFCATGQSGFVRNLSAGEIVSQIIAMEK-------------------HRKVNIGNI 153 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241 V MGMGEPL N+ V KS+ + + G + S RRI++ST G I + +++ V LAI Sbjct: 154 VYMGMGEPLLNYKEVVKSVKMLNHKKGKNISMRRISISTVGIPEKIVELAQDLPEVKLAI 213 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA +N R+I+VP+N+KY +E +I + + Y ++ R+TFEY++++ ND DA Sbjct: 214 SLHAPNNYKRDIIVPMNKKYSVEEIIQSAKEYQKIT-KNRVTFEYILIREFNDFVDDAEK 272 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKD---IVTFSECIKRSGYSSPIRTPRGLDI 358 L ++LKG+ A +NLIP NP P L ++ I F E + + + IR +G DI Sbjct: 273 LAELLKGMGAYVNLIPVNPVPSSGELKFERPHHWAIERFKEVLDKHNIENEIRREKGTDI 332 Query: 359 LAACGQLK 366 AACGQL+ Sbjct: 333 DAACGQLR 340 >gi|21282830|ref|NP_645918.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus subsp. aureus MW2] gi|49486057|ref|YP_043278.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus subsp. aureus MSSA476] gi|300912218|ref|ZP_07129661.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus TCH70] gi|81649432|sp|Q6G9Z5|RLMN_STAAS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|81762575|sp|Q8NX16|RLMN_STAAW RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|21204269|dbj|BAB94966.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] gi|49244500|emb|CAG42929.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MSSA476] gi|300886464|gb|EFK81666.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus TCH70] Length = 364 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 127/371 (34%), Positives = 208/371 (56%), Gaps = 25/371 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 K+S+ + +E++ L++ G + R QI++W+Y + + M+++S+++R L Sbjct: 16 FDKQSIYSLRFDEMQNWLVEQG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKDLRQL 71 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +F++ V ++ S DGT K+L + IETV + ++CV++QVG Sbjct: 72 LKDNFTVTTLTTVVKQESKDGTIKFLYE-----LQDGYTIETVLMRHDYGNSVCVTTQVG 126 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C+FC + L RNL A EI+ QVL + L + ++S IV Sbjct: 127 CRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKAL--------------DATEERVSQIV 172 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+D + L I +D L+ R IT+STSG +P I +E I + A+S Sbjct: 173 IMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFADEDIQINFAVS 232 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +++R+ L+PINR Y +E LI+A ++Y +N RR+TFEY + G+ND A L Sbjct: 233 LHAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTN-RRVTFEYGLFGGVNDQLEHAREL 291 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++KG+ +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AAC Sbjct: 292 AHLIKGLNCHVNLIPVNHVPERNYVKTAKNDIFKFEKELKRLGINATIRREQGSDIDAAC 351 Query: 363 GQLKSLSKRIP 373 GQL++ +++ Sbjct: 352 GQLRAKERQVE 362 >gi|291279341|ref|YP_003496176.1| hypothetical protein DEFDS_0948 [Deferribacter desulfuricans SSM1] gi|290754043|dbj|BAI80420.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 360 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 122/334 (36%), Positives = 196/334 (58%), Gaps = 21/334 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE-KISCDGTRKWLLR 91 R +Q++KWIY +G+ F M+D+ E R L ++FS +V++ + DG+ K L R Sbjct: 25 FRATQLFKWIYQKGVTSFDEMTDLPLEFRKKLIENFSFTKLTVVEQLESQLDGSIKVLFR 84 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 IE+V + + R T C+S+QVGC + C FC T L+RNLT+ EI+ Q+ Sbjct: 85 LEDDNF-----IESVLMFDGKRVTACLSTQVGCRMGCQFCNTAKIGLIRNLTSAEIIRQI 139 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 + R+L + + ++N+V MGMGEPL NFDN+ KSL I + L+ Sbjct: 140 IYLRNL--------------AETKKKPLTNLVFMGMGEPLDNFDNLTKSLDIILNEEALN 185 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 FS R++T+ST G + + + + V +AISL+AV+N +R+ L+P+N++YP+E +I+ + Sbjct: 186 FSHRKVTVSTCGIMDKLNLLAKHYKVNIAISLNAVTNKIRSKLMPVNKRYPIEEIINGIK 245 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 P + +RIT EYV++ G+N++ +DA L+K LKG+P K+NLI +N ++ Sbjct: 246 KLP-IPKRKRITLEYVLIDGLNNTTKDANLLVKQLKGLPIKVNLILYNKTKLSDFHSPQL 304 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + F + + +G ++ IR G DI AACGQL Sbjct: 305 NYALNFQKTLINNGIATFIRKSFGQDIEAACGQL 338 >gi|188997621|ref|YP_001931872.1| radical SAM enzyme, Cfr family [Sulfurihydrogenibium sp. YO3AOP1] gi|188932688|gb|ACD67318.1| radical SAM enzyme, Cfr family [Sulfurihydrogenibium sp. YO3AOP1] Length = 354 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 134/358 (37%), Positives = 208/358 (58%), Gaps = 29/358 (8%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 +ELE +++ G + R QI KW+Y + + + M+D+S+++R+ L ++ E Sbjct: 11 KELENFVVEKGWQ----KFRAKQIAKWLYKKKVSSYDEMTDLSKDIRNYLKENTEFNALE 66 Query: 75 IV-DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133 +V ++ DG+ K+L + + IETV I EK+ TLCVS+QVGC++ C FC+T Sbjct: 67 LVMYQQSKIDGSIKFLWK-----LKDGNTIETVLINEKNHKTLCVSTQVGCAVGCKFCFT 121 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 L+RNL EI+ Q + + LG +ISNIV MGMGEPL N Sbjct: 122 TKDGLIRNLETAEIVEQYINVQRFLG-------------MEEENRISNIVYMGMGEPLAN 168 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI---GVMLAISLHAVSNDL 250 ++NVKKS+ I + + S R+IT+S+SG + I R+ E+ V LA+SL+A + D Sbjct: 169 YENVKKSVQIFTHPDMVGLSHRKITISSSGILHQIKRMYEDKEFPEVKLAVSLNASNQDQ 228 Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310 R L+PI++ L+ L+D R P L RIT EYV++KG+NDS +DA L+ +LK Sbjct: 229 RAFLMPISQTNTLQDLMDLLRSIP-LKPGWRITLEYVLMKGVNDSEQDAKRLVNLLKKDK 287 Query: 311 A--KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 K+NLIPFNP+P E+ +++ ++ F + + + ++ IR +G DI AACGQL+ Sbjct: 288 HRFKVNLIPFNPYPSAEFERPEEERVLKFEKILWDNNIATFIRWSKGRDIDAACGQLR 345 >gi|294500981|ref|YP_003564681.1| radical SAM enzyme, Cfr family [Bacillus megaterium QM B1551] gi|294350918|gb|ADE71247.1| radical SAM enzyme, Cfr family [Bacillus megaterium QM B1551] Length = 363 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 126/368 (34%), Positives = 206/368 (55%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K S+ + +LE L++ G + R QI+ W+YV+ + DF MS++S+ +R L Sbjct: 16 QKPSIYSLEMHDLENWLVEHGDK----KFRAKQIFDWLYVKRVTDFDDMSNLSKGLREQL 71 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 F++ + V ++ S DGT K+L + IETV + + ++CV++QVGC Sbjct: 72 KDKFALTTLKTVVQQTSGDGTMKFLFE-----LHDGYTIETVLMRHEYGNSVCVTTQVGC 126 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + G ++S++V+ Sbjct: 127 RIGCTFCASTLGGLKRNLEAGEIVAQVVKVQKALDE--------------QGERVSSVVI 172 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+D + + L + GL+ R IT+STSG +P I + +E + + AISL Sbjct: 173 MGIGEPFDNYDEMMRFLKTINSDDGLNIGARHITVSTSGIIPKIYKFADEKMQINFAISL 232 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +ND+R+ L+PINR Y L L++A ++Y RRI+FEY + G+ND A L Sbjct: 233 HAPNNDIRSRLMPINRAYKLPDLMEAIKYYTD-KTGRRISFEYGLFGGVNDQVEHAEELA 291 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++K + +NLIP N P +Y+ + ++ I F +K+ G + IR +G DI AACG Sbjct: 292 DLIKDVKCHVNLIPVNYVPERDYVRTPREQIFAFERTLKKRGVNVTIRREQGHDIDAACG 351 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 352 QLRAKERK 359 >gi|167464611|ref|ZP_02329700.1| Radical SAM family enzyme [Paenibacillus larvae subsp. larvae BRL-230010] gi|322384327|ref|ZP_08058025.1| Fe-S-cluster-like AdoMet radical enzyme [Paenibacillus larvae subsp. larvae B-3650] gi|321150829|gb|EFX44266.1| Fe-S-cluster-like AdoMet radical enzyme [Paenibacillus larvae subsp. larvae B-3650] Length = 343 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 122/337 (36%), Positives = 197/337 (58%), Gaps = 22/337 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI+ W+YV+ + D MS++S+ +R + +F + + + + S DGT K+L Sbjct: 21 FRADQIFDWLYVKRVTDVNQMSNLSKALREKIKTNFEFVVLKEIANQRSQDGTVKFLFEL 80 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + IETV + ++CV++QVGC + C+FC + L R+L+A EI+ Q++ Sbjct: 81 SDKN-----AIETVIMKHNYGNSVCVTTQVGCRVGCTFCASTLGGLKRDLSAGEIVAQIV 135 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A+ LL + ++S+IV+MG+GEP N++ + K L I D GL Sbjct: 136 KAQKLLDE--------------TDERVSSIVIMGIGEPFENYEAMMKFLKIMIDPKGLHI 181 Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 +R IT+STSG VPNI R +E + LAIS+HA ++ LR+ L+P+NR++P LI+AC+ Sbjct: 182 GQRHITVSTSGIVPNIYRFADEKTQINLAISIHAPNDALRSKLMPVNRRFPFADLIEACK 241 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP-AKINLIPFNPWPGCEYLCSD 330 +Y + RRITFEY ++ G+ND A L ++L+ P +NLIP N +Y+ + Sbjct: 242 YYTQ-TTGRRITFEYALMGGVNDQAEHAEELAQVLQQFPMCHVNLIPVNYVMERKYVRTP 300 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 ++DI F ++R+ ++ IR +G DI AACGQL++ Sbjct: 301 REDIFNFQRILERNKINATIRREQGSDIAAACGQLRA 337 >gi|257059331|ref|YP_003137219.1| ribosomal RNA large subunit methyltransferase N [Cyanothece sp. PCC 8802] gi|256589497|gb|ACV00384.1| radical SAM enzyme, Cfr family [Cyanothece sp. PCC 8802] Length = 340 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 138/370 (37%), Positives = 206/370 (55%), Gaps = 39/370 (10%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 + +E+L+G +EL + + K G P R Q+ +W+Y +G R +S + R Sbjct: 2 LVTEETLLGKSLDELTQWVEKQGQP----TYRGKQLHQWLYEKGARSLDEISVFPKIWRE 57 Query: 63 LLNQHFSIIYP---EIVDEK-ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118 L I YP +D + ++ D TRK+LL C+G + IETV IP R T+CV Sbjct: 58 KL-----INYPIGRSTIDYRTVAPDATRKYLL-----CLGDGLIIETVGIPTAKRLTVCV 107 Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 SSQVGC + C FC TG R+L A EI+ QVL + ED + R+ Sbjct: 108 SSQVGCPMACDFCATGKGGYQRHLRAHEIVDQVLTVQ---------EDFQ--------RR 150 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGV 237 +S++V MGMGEPL N + V KS+ I + +G+ +R +T+ST G I ++ + V Sbjct: 151 VSHVVFMGMGEPLLNLEEVVKSVKILNQDIGIG--QRSLTISTVGLPQKIIQLAHHHLQV 208 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 LA+SLHA + LR L+P + YPL+ L+ CR Y ++ RRI+FEYV+L G+ND P Sbjct: 209 TLAVSLHASNQPLRETLIPSAQHYPLKNLLADCREYVNIT-GRRISFEYVLLGGVNDLPE 267 Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 A+ L +LKG + +NLIP+NP +Y +Q I TF + +++ + +R RGL+ Sbjct: 268 QAIELANLLKGFQSHVNLIPYNPIDEADYQRPNQTQIQTFVQVLEQHKIAVSVRYSRGLE 327 Query: 358 ILAACGQLKS 367 AACGQL++ Sbjct: 328 ANAACGQLRA 337 >gi|324990694|gb|EGC22630.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK353] gi|324993429|gb|EGC25349.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK405] gi|327461703|gb|EGF08034.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1] Length = 362 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 133/368 (36%), Positives = 212/368 (57%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+E+ ++ Q + R SQIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQEM----IEWAEAQGEKKFRASQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI+ Q++L + D G ++ ++S+IV Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+S Sbjct: 159 VMGIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +NDLR ++ INR +P+E L A +Y +N RR+TFEY+ML +ND A L Sbjct: 219 LHAPNNDLRTSIMRINRSFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQAKEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++LK I + +NLIP+NP +Y S ++ ++ F + +K++G + +R G DI Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|241890016|ref|ZP_04777314.1| radical SAM enzyme, Cfr family [Gemella haemolysans ATCC 10379] gi|241863638|gb|EER68022.1| radical SAM enzyme, Cfr family [Gemella haemolysans ATCC 10379] Length = 377 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 126/369 (34%), Positives = 205/369 (55%), Gaps = 25/369 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 K S+ + ++LEE ++ IG + R QI+ W+Y + I DF M ++ + ++ Sbjct: 18 FDKMSIYSIRLDQLEEYIVSIG----EKKFRAKQIFDWLYKKRITDFSEMKNVPKSLQEK 73 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L + F I + + ++ S DGT K+L + IE+V + K +LCV++QVG Sbjct: 74 LAEEFEITTLKTIIKQESADGTMKFLFELQDKYT-----IESVLMKNKYGNSLCVTTQVG 128 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C+FC + L RNL A EI+ QVL + L G +IS+IV Sbjct: 129 CRIGCTFCASTLGGLKRNLEAGEIVSQVLKVQQEL--------------DKKGERISSIV 174 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242 +MG+GEP N+D + + I + + R IT+STSG VP I E++ + A+S Sbjct: 175 IMGIGEPFENYDEMMDFIRIVNSDESFNIGARHITVSTSGIVPKIYDFANEKVQINFAVS 234 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++P+NR Y ++ L++A ++Y +N RRITFEY ++ +ND A L Sbjct: 235 LHAPTNELRSKIMPVNRAYNIDKLMEALKYYQETTN-RRITFEYGLMGKVNDQKEHAEKL 293 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +I+KG+ +NLIP N P Y+ + + DI F + +K++ + IR +G DI AAC Sbjct: 294 SEIIKGLNCHVNLIPINYVPERNYVRTSKSDIFAFEKVLKKNKVNVTIRRTQGDDIDAAC 353 Query: 363 GQLKSLSKR 371 GQL++ ++ Sbjct: 354 GQLRAKERK 362 >gi|146321533|ref|YP_001201244.1| ribosomal RNA large subunit methyltransferase N [Streptococcus suis 98HAH33] gi|253752360|ref|YP_003025501.1| radical SAM superfamily protein [Streptococcus suis SC84] gi|253754186|ref|YP_003027327.1| radical SAM superfamily protein [Streptococcus suis P1/7] gi|253756120|ref|YP_003029260.1| radical SAM superfamily protein [Streptococcus suis BM407] gi|205829908|sp|A4W3A5|RLMN_STRS2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|145692339|gb|ABP92844.1| Predicted Fe-S-cluster redox enzyme [Streptococcus suis 98HAH33] gi|251816649|emb|CAZ52290.1| radical SAM superfamily protein [Streptococcus suis SC84] gi|251818584|emb|CAZ56418.1| radical SAM superfamily protein [Streptococcus suis BM407] gi|251820432|emb|CAR47102.1| radical SAM superfamily protein [Streptococcus suis P1/7] gi|292558962|gb|ADE31963.1| Predicted Fe-S-cluster redox enzyme [Streptococcus suis GZ1] gi|319758764|gb|ADV70706.1| Fe-S-cluster redox protein [Streptococcus suis JS14] Length = 370 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 129/342 (37%), Positives = 201/342 (58%), Gaps = 26/342 (7%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI--IYPEIVDEKISCDGTRKWL 89 + R +QIW+W+Y ++ F M+++ + + L +HF + + IV E S DGT K+L Sbjct: 24 KFRATQIWEWLYRSRVQSFAEMTNLPKSLIEKLEEHFVVNPLKQRIVQE--SKDGTIKYL 81 Query: 90 LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149 P + IETV + + ++CV++QVGC++ C+FC +G R+LT+ EI+ Sbjct: 82 FELPDGML-----IETVLMHQHYGLSVCVTTQVGCNIGCTFCASGLIPKQRDLTSGEIVA 136 Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209 Q++L + L + E ++S+IV+MG+GEPL N+DNV L + +D G Sbjct: 137 QIMLVQKYLDERNQNE------------RVSHIVVMGIGEPLDNYDNVMTFLRVVNDDKG 184 Query: 210 LSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 L+ R IT+STSG P I E + V LA+SLHA +NDLR+ ++ INRK+P+E+L + Sbjct: 185 LAIGARHITVSTSGLAPKIREFAREGVQVNLAVSLHAPNNDLRSSIMRINRKFPIEVLFE 244 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGC-E 325 A Y ++N RR+TFEY+ML +ND A L + K I + INLIP+NP + Sbjct: 245 AIEDYIKVTN-RRVTFEYIMLNEVNDGVEQAQELADLTKNIRKLSYINLIPYNPVSEHDQ 303 Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 Y S ++ + F + +K++G + +R G DI AACGQL+S Sbjct: 304 YSRSTKERTLAFFDVLKKNGVNCVVRQEHGTDIDAACGQLRS 345 >gi|317475867|ref|ZP_07935124.1| cfr family radical SAM enzyme [Bacteroides eggerthii 1_2_48FAA] gi|316908027|gb|EFV29724.1| cfr family radical SAM enzyme [Bacteroides eggerthii 1_2_48FAA] Length = 345 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 130/362 (35%), Positives = 194/362 (53%), Gaps = 29/362 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ L+G+ EL+ + +G+P QI W+Y + + M+++S + R LL Sbjct: 2 KQPLLGLTLTELQAVVKNLGMPG----FAAKQIASWLYGKKVASIDEMTNLSLKHRELLK 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + VD S DGT K+L R +G +E VYIPE+ R TLCVSSQVGC Sbjct: 58 DIYEVGGEAPVDAMRSVDGTVKYLYR-----VGEGHYVEAVYIPEEDRATLCVSSQVGCK 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q NLTA +I+ Q+ P + K++N+VMM Sbjct: 113 MNCKFCMTGKQGFTGNLTAGQIINQI-------NSLPERD------------KLTNVVMM 153 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N D V K+L + + S G +S +R+TLS+ G + R EE LAISLH+ Sbjct: 154 GMGEPLDNLDEVLKALEVMTASYGYGWSPKRVTLSSVGLRKGLQRFVEESDCHLAISLHS 213 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 R L+P + + + +++ R+Y S RR++FEY++ KG+NDS A L+K+ Sbjct: 214 PVPQQRRELMPAEKAFSITEIVELLRNYD-FSKQRRLSFEYIVFKGVNDSLLYAKELLKL 272 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G+ +INLI F+ PG + +D + + + + G + IR RG DI AACG L Sbjct: 273 LRGLDCRINLIRFHAIPGVDLEGADMETMTALRDYLTSHGLFTTIRASRGEDIFAACGML 332 Query: 366 KS 367 + Sbjct: 333 ST 334 >gi|242373506|ref|ZP_04819080.1| Fe-S-cluster redox enzyme [Staphylococcus epidermidis M23864:W1] gi|242348869|gb|EES40471.1| Fe-S-cluster redox enzyme [Staphylococcus epidermidis M23864:W1] Length = 364 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 124/371 (33%), Positives = 209/371 (56%), Gaps = 25/371 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +K+S+ + +E+++ L+ G + R QI++W+Y + + M+++S+++R + Sbjct: 16 FEKQSIYSLRYDEMQQWLIDHG----QQKFRAKQIFEWLYQKRVNSIDEMTNLSKDLRQV 71 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +F++ V ++ S DGT K+L + IETV + + ++CV++QVG Sbjct: 72 LKDNFAMTTLTTVVKQESKDGTIKFLFE-----LQDGYTIETVLMRHEYGNSVCVTTQVG 126 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C+FC + L RNL A EI+ QVL + L + ++S IV Sbjct: 127 CRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TDERVSQIV 172 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+D + L I +D L+ R IT+STSG +P I EE I + A+S Sbjct: 173 IMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVS 232 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LH +++R+ L+PINR Y +E L++A ++Y +N RR+TFEY + G+ND A L Sbjct: 233 LHGAKDEIRSRLMPINRAYNVEKLMEAIQYYQEKTN-RRVTFEYGLFGGVNDQLEHAREL 291 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++K + +NLIP N P Y+ + ++DI F + +KR G ++ IR +G DI AAC Sbjct: 292 AHLIKDLNCHVNLIPVNHVPERNYVKTPREDIFKFEKELKRLGINATIRREQGSDIDAAC 351 Query: 363 GQLKSLSKRIP 373 GQL++ +++ Sbjct: 352 GQLRAKERQVE 362 >gi|329767014|ref|ZP_08258542.1| ribosomal RNA large subunit methyltransferase N [Gemella haemolysans M341] gi|328837739|gb|EGF87364.1| ribosomal RNA large subunit methyltransferase N [Gemella haemolysans M341] Length = 377 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 125/369 (33%), Positives = 205/369 (55%), Gaps = 25/369 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 K S+ + ++LEE ++ IG + R QI+ W+Y + + DF M ++ + ++ Sbjct: 18 FDKMSIYSLRLDQLEEYIVSIG----EKKFRAKQIYDWLYKKRVTDFSEMKNVPKSLQEK 73 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L + F I + + ++ S DGT K+L + IE+V + K +LCV++QVG Sbjct: 74 LAEEFEITTLKTIIKQESADGTMKFLFELQDKYT-----IESVLMKNKYGNSLCVTTQVG 128 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C+FC + L RNL A EI+ QVL + L G +IS+IV Sbjct: 129 CRIGCTFCASTLGGLKRNLDAGEIVSQVLKVQQEL--------------DKKGERISSIV 174 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242 +MG+GEP N+D + + I + + R IT+STSG VP I E++ + A+S Sbjct: 175 IMGIGEPFENYDEMMDFIRIVNSDESFNIGARHITVSTSGIVPKIYDFANEKVQINFAVS 234 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++P+NR Y ++ L++A ++Y +N RRITFEY ++ +ND A L Sbjct: 235 LHAPTNELRSKIMPVNRAYNIDKLMEALKYYQETTN-RRITFEYGLMGKVNDQKEHAEKL 293 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +I+KG+ +NLIP N P Y+ + + DI F + +K++ + IR +G DI AAC Sbjct: 294 SEIIKGLNCHVNLIPINYVPERNYVRTSKSDIFAFEKILKKNKVNVTIRRTQGDDIDAAC 353 Query: 363 GQLKSLSKR 371 GQL++ ++ Sbjct: 354 GQLRAKERK 362 >gi|304408290|ref|ZP_07389938.1| radical SAM enzyme, Cfr family [Paenibacillus curdlanolyticus YK9] gi|304342759|gb|EFM08605.1| radical SAM enzyme, Cfr family [Paenibacillus curdlanolyticus YK9] Length = 357 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 133/364 (36%), Positives = 211/364 (57%), Gaps = 26/364 (7%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 S+ G+ +++L LL+ G H + R +Q+W+W+Y + + D+ M+D++ + LL +H Sbjct: 7 SIYGLTQDQLAAWLLERG----HKKFRATQVWEWLYRKRVTDYAAMTDVNPDCIALLAEH 62 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F+I E ++ S DGT K+LLR + IETV + K ++CV++QVGC++ Sbjct: 63 FAITTLEEHTKQESTDGTIKFLLRLTDGNL-----IETVLMRHKFGLSVCVTTQVGCNIG 117 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 CSFC +G R+LT+ EI+ Q++ + L D G G ++++IV+MG+ Sbjct: 118 CSFCASGLLAKSRDLTSGEIVGQIMKVQLHL-------DQAGQ-----GERVTHIVVMGI 165 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAV 246 GEP NF N+ +++ D GL+ R IT+STSG I + + V LAISLHA Sbjct: 166 GEPFDNFANMVDFINVVKDHKGLAIGPRHITVSTSGLANKIYEFTDSNLQVNLAISLHAP 225 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 +++LR ++ INR P+ L++A +Y +N RRIT EY++LK +ND AL L +++ Sbjct: 226 NDELRTRIMKINRAIPIAKLMEAIDYYLAKTN-RRITLEYILLKDVNDRKEHALELAELV 284 Query: 307 --KGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 + A +NLIP+NP +Y S+Q I F + +K+ G S +R G DI AACG Sbjct: 285 GERRSLANVNLIPYNPVDEHSQYQRSEQDSIREFYDTLKKQGVSCSVRLEHGTDIDAACG 344 Query: 364 QLKS 367 QL+S Sbjct: 345 QLRS 348 >gi|226227123|ref|YP_002761229.1| hypothetical protein GAU_1717 [Gemmatimonas aurantiaca T-27] gi|259491989|sp|C1A949|RLMN_GEMAT RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|226090314|dbj|BAH38759.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 360 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 134/352 (38%), Positives = 188/352 (53%), Gaps = 29/352 (8%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93 R +Q++ ++ R +R F M+++ + +R L F I E+ + S DGT K+L R Sbjct: 32 RAAQVFGRLWQRPVRSFDEMTELPKALREGLAGSFRITALELTTRQKSMDGTEKFLFRMH 91 Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153 + IETV IP+ R T C+SSQ GC+L C+FC TG RNL EI QV Sbjct: 92 DGQL-----IETVAIPDGDRLTFCISSQAGCALQCAFCATGAMGFQRNLHPSEIAGQVRE 146 Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213 R M+ PS+ +NIV MGMGEPL N+ V +LS+ +D L Sbjct: 147 LR--------------MLTPSI--VPTNIVFMGMGEPLMNWKAVSPTLSLLNDPRALGIG 190 Query: 214 KRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 R IT+ST G +P I A LAIS+HA S+ LR L+P+N KYPL +I A R Sbjct: 191 ARHITISTVGVLPGIVALAARPEQFRLAISIHAPSDALRRTLMPVNTKYPLADVIAAARE 250 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 + RR+TFEYVML G+ND P A L ++ + A +NLIP +P + S Sbjct: 251 FD-----RRVTFEYVMLGGVNDQPEHAAQLAQLARDCRAFVNLIPLHPGGSMGFSPSTTP 305 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS--LSKRIPKVPRQEMQI 382 I F++ I+ G + +R RGLDI AACGQL++ L +R+P + ++ Sbjct: 306 TINAFAKAIRARGVETAVRRSRGLDIAAACGQLRTERLGRRLPVAAQDHGEV 357 >gi|326405757|gb|ADZ62828.1| radical SAM family enzyme [Lactococcus lactis subsp. lactis CV56] Length = 365 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 133/372 (35%), Positives = 215/372 (57%), Gaps = 29/372 (7%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 S+ G+ R++L E ++ G + R +Q+W W+Y + ++ F+ MS++S LN+H Sbjct: 12 SIYGLTRDQLIEWAIENG----EKKFRATQVWDWLYRKRVQSFEEMSNLSAAFIDKLNEH 67 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F + E V + S DGT K+L P + + IETV + + ++CV++QVGC++ Sbjct: 68 FILNTLEQVVVQESADGTVKYLFMLPDKMM-----IETVLMRQSYGLSVCVTTQVGCNMG 122 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C+FC +G K R++TA EI+ Q++L + D G+ ++S++V+MG+ Sbjct: 123 CTFCASGILKKERDVTAGEIVSQIMLVQKYF-------DERGL-----DERVSHVVVMGI 170 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAISLHA 245 GEP N++++ L + +D GL+ R IT+ST GF+P + E + + LAISLHA Sbjct: 171 GEPFDNYEHLMNFLRVINDDNGLAIGARHITVSTCGFMPAKIKEFAHENLQINLAISLHA 230 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +N+LR L+ I R PLE L +A +Y +N RR+T+EY+ML G NDSP A L + Sbjct: 231 PNNELRTSLMRITRNAPLEKLFEAIDYYTETTN-RRVTYEYIMLSGENDSPEIAQQLADL 289 Query: 306 LK--GIPAKINLIPFNP-WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +K + +NLIP+NP +Y S + + F + +K++G + +R G DI AAC Sbjct: 290 IKPRNKLSYVNLIPYNPVAEHIKYERSTKDNTAKFYDVLKKNGINCVVRQEHGTDIDAAC 349 Query: 363 GQLKSLSKRIPK 374 GQL+ SK+I K Sbjct: 350 GQLR--SKQIKK 359 >gi|167765103|ref|ZP_02437216.1| hypothetical protein BACSTE_03489 [Bacteroides stercoris ATCC 43183] gi|167696731|gb|EDS13310.1| hypothetical protein BACSTE_03489 [Bacteroides stercoris ATCC 43183] gi|290770009|gb|ADD61775.1| putative protein [uncultured organism] Length = 345 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 131/362 (36%), Positives = 193/362 (53%), Gaps = 29/362 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ L+G+ EL+ + +G+P QI W+Y + + M+++S R LL Sbjct: 2 KQPLLGLTLTELQTVVKNLGLPG----FAAKQIAAWLYDKKVASIDEMTNLSLRHRALLK 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + + VD S DGT K+L R G +E VYIP++ R TLCVSSQVGC Sbjct: 58 EIYEVGCEVPVDAMRSVDGTVKYLYR-----AGEGHYVEAVYIPDEDRATLCVSSQVGCK 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q NLTA +I+ Q+ P + K++N+VMM Sbjct: 113 MNCKFCMTGKQGFTANLTANQIINQI-------NSLPERD------------KLTNVVMM 153 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N D V K+L + + S G +S +RITLS+ G + R EE LA+SLH+ Sbjct: 154 GMGEPLDNLDEVLKALEVMTSSYGYGWSPKRITLSSVGLRKGLQRFIEESDCHLAVSLHS 213 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 R L+P + + + ++D R+Y S RR++FEY++ KG+NDS A L+K+ Sbjct: 214 PVPLQRRELMPAEKAFSITEIVDLLRNYD-FSKQRRLSFEYIVFKGVNDSLLYAKELLKL 272 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G+ +INLI F+ PG +D + + F + + G + IR RG DI AACG L Sbjct: 273 LRGLDCRINLIRFHAIPGVNLEGADMETMTAFRDYLTSHGLFTTIRASRGEDIFAACGML 332 Query: 366 KS 367 + Sbjct: 333 ST 334 >gi|218129787|ref|ZP_03458591.1| hypothetical protein BACEGG_01366 [Bacteroides eggerthii DSM 20697] gi|217987897|gb|EEC54222.1| hypothetical protein BACEGG_01366 [Bacteroides eggerthii DSM 20697] Length = 345 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 130/362 (35%), Positives = 194/362 (53%), Gaps = 29/362 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ L+G+ EL+ + +G+P QI W+Y + + M+++S + R LL Sbjct: 2 KQPLLGLTLTELQAVVKNLGMPG----FAAKQIASWLYGKKVASIDEMTNLSLKHRDLLK 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + VD S DGT K+L R +G +E VYIPE+ R TLCVSSQVGC Sbjct: 58 DIYEVGGEAPVDAMRSVDGTVKYLYR-----VGEGHYVEAVYIPEEDRATLCVSSQVGCK 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q NLTA +I+ Q+ P + K++N+VMM Sbjct: 113 MNCKFCMTGKQGFTGNLTAGQIINQI-------NSLPERD------------KLTNVVMM 153 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N D V K+L + + S G +S +R+TLS+ G + R EE LAISLH+ Sbjct: 154 GMGEPLDNLDEVLKALEVMTASYGYGWSPKRVTLSSVGLRKGLQRFVEESDCHLAISLHS 213 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 R L+P + + + +++ R+Y S RR++FEY++ KG+NDS A L+K+ Sbjct: 214 PVPQQRRELMPAEKAFSITEIVELLRNYD-FSKQRRLSFEYIVFKGVNDSLLYAKELLKL 272 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G+ +INLI F+ PG + +D + + + + G + IR RG DI AACG L Sbjct: 273 LRGLDCRINLIRFHAIPGVDLEGADMETMTALRDYLTSHGLFTTIRASRGEDIFAACGML 332 Query: 366 KS 367 + Sbjct: 333 ST 334 >gi|225418643|ref|ZP_03761832.1| hypothetical protein CLOSTASPAR_05867 [Clostridium asparagiforme DSM 15981] gi|225041830|gb|EEG52076.1| hypothetical protein CLOSTASPAR_05867 [Clostridium asparagiforme DSM 15981] Length = 368 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 129/357 (36%), Positives = 203/357 (56%), Gaps = 29/357 (8%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 M EELE L ++G R QI+ W++V+ F+ M+ IS+E++ L+ S+ Sbjct: 16 MTPEELEAFLKELGEKP----FRAKQIYDWLHVKLAERFEEMTSISKELQRKLDAACSLT 71 Query: 72 YPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130 +VDEKIS DGTRK+L I IE+V++ ++C+SSQ GC + C F Sbjct: 72 CLRVVDEKISTIDGTRKYLFALADGNI-----IESVWMQYHHGNSVCISSQAGCRMGCRF 126 Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 C + L RNL E+L Q+ + + G+ ++SN+V+MG GEP Sbjct: 127 CASTLDGLARNLRPSEMLDQIYRIQRITGE-----------------RVSNVVVMGSGEP 169 Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSND 249 + N+DN+ + + + S GL+ S+R +T+ST G VP I R+ EE + LA+SLHA ++ Sbjct: 170 MDNYDNLVRFIRLISHEKGLNISQRNLTVSTCGLVPEIRRLAEEGFQITLALSLHAPDDE 229 Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309 +R L+PI +Y L+ ++ ACR+Y RR+TFEY ++ G+ND+ R+A L K+++ Sbjct: 230 VRKTLMPIANRYCLKDVLAACRYYYQ-QTGRRLTFEYSLVHGVNDNLREAAALAKLIRHE 288 Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +NLIP NP +++ S QK+I F ++++G + IR G DI ACGQL+ Sbjct: 289 HGHVNLIPVNPIKERDFVQSGQKEIQDFKNLLEKNGINVTIRREMGRDIGGACGQLR 345 >gi|304316971|ref|YP_003852116.1| radical SAM protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778473|gb|ADL69032.1| radical SAM enzyme, Cfr family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 343 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 137/369 (37%), Positives = 207/369 (56%), Gaps = 33/369 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 L M +ELE+ + IG + R Q+++WIY RG+ +F+ M+D+ E+R LN Sbjct: 3 DLKNMTIDELEKFFVDIG----ETKYRAKQVFQWIY-RGVTNFEEMTDLKIELRKKLNSI 57 Query: 68 FSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I +I + +S D T K+L I +E V I T C+S+QVGC++ Sbjct: 58 AYISSLKIAQKLVSDADETAKYLFLLDDENI-----VEGVAIKYSYGNTSCISTQVGCNM 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 CSFC +G VRNL A E++ +VL+ + G KISNIV+MG Sbjct: 113 KCSFCASGIGGKVRNLKASEMVDEVLIMDNDYG------------------KISNIVLMG 154 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 GEP N++ V K + I ++ G+ R IT+ST G VP I E +GV L+ISLHA Sbjct: 155 SGEPFDNYEEVMKFIKIVNNPFGMGVGIRHITISTCGIVPKIYDFANEGLGVNLSISLHA 214 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++DLR L+PIN+ YP++ LI AC++Y ++ RR+TFEY ++K +ND+ ++ L K+ Sbjct: 215 PTDDLRTQLMPINKVYPIKDLIKACKYYIDKTH-RRVTFEYSLIKDVNDNYEMSVKLSKL 273 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G+ +NLIP N Y +D + I+ F ++++G + +R G DI AACGQL Sbjct: 274 LRGLLCHVNLIPINYVDEIGYKKADNEKIIAFKNTLEKNGITCTVRRELGSDINAACGQL 333 Query: 366 --KSLSKRI 372 K L+ R+ Sbjct: 334 RRKYLAGRV 342 >gi|15675432|ref|NP_269606.1| ribosomal RNA large subunit methyltransferase N [Streptococcus pyogenes M1 GAS] gi|21910720|ref|NP_664988.1| ribosomal RNA large subunit methyltransferase N [Streptococcus pyogenes MGAS315] gi|28895590|ref|NP_801940.1| ribosomal RNA large subunit methyltransferase N [Streptococcus pyogenes SSI-1] gi|56807972|ref|ZP_00365785.1| COG0820: Predicted Fe-S-cluster redox enzyme [Streptococcus pyogenes M49 591] gi|71903862|ref|YP_280665.1| ribosomal RNA large subunit methyltransferase N [Streptococcus pyogenes MGAS6180] gi|71911074|ref|YP_282624.1| ribosomal RNA large subunit methyltransferase N [Streptococcus pyogenes MGAS5005] gi|94994765|ref|YP_602863.1| ribosomal RNA large subunit methyltransferase N [Streptococcus pyogenes MGAS10750] gi|209559696|ref|YP_002286168.1| ribosomal RNA large subunit methyltransferase N [Streptococcus pyogenes NZ131] gi|81620716|sp|Q99YU5|RLMN_STRP1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|81706663|sp|Q7CEX7|RLMN_STRP3 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|122986830|sp|Q1J5R7|RLMN_STRPF RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123747764|sp|Q48SK0|RLMN_STRPM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807217|sp|B5XMB1|RLMN_STRPZ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|13622621|gb|AAK34327.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS] gi|21904923|gb|AAM79791.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315] gi|28810839|dbj|BAC63773.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1] gi|71802957|gb|AAX72310.1| radical SAM family enzyme [Streptococcus pyogenes MGAS6180] gi|71853856|gb|AAZ51879.1| radical SAM family enzyme [Streptococcus pyogenes MGAS5005] gi|94548273|gb|ABF38319.1| Radical SAM family enzyme [Streptococcus pyogenes MGAS10750] gi|209540897|gb|ACI61473.1| hypothetical protein Spy49_1185c [Streptococcus pyogenes NZ131] Length = 359 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 132/368 (35%), Positives = 209/368 (56%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+EL ++ G Q R +QIW W+Y + ++ F+ M++IS++ +LN Sbjct: 2 KPSIYSLTRDELIAWAVERGQKQ----FRATQIWDWLYKKRVQSFEEMTNISKDFVSILN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + +V E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DSFCVNPLKQRVVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L + EI Q++L + D G ++S++V Sbjct: 111 CNIGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDD------------RKQGERVSHVV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+ NV L + +D GL+ R IT+STSG I E + V LA+S Sbjct: 159 VMGIGEPFDNYKNVMCFLRVINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +NDLR+ ++ +NR +PLE L A +Y +N RR+TFEY+ML +NDS + A L Sbjct: 219 LHAPNNDLRSSIMRVNRSFPLEKLFSAIEYYIEKTN-RRVTFEYIMLNEVNDSIKQAQEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 + K I + +NLIP+NP +Y S ++ ++ F + +K++G + +R G DI Sbjct: 278 ADLTKTIRKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDVLKKNGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|297530651|ref|YP_003671926.1| radical SAM enzyme, Cfr family [Geobacillus sp. C56-T3] gi|297253903|gb|ADI27349.1| radical SAM enzyme, Cfr family [Geobacillus sp. C56-T3] Length = 365 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 129/365 (35%), Positives = 201/365 (55%), Gaps = 25/365 (6%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 S+ + +EL+E L + Q R +QI++W+Y + DF M+++ + +R L Sbjct: 21 SIYSLTLDELKEWL----VAQGEKPFRATQIYEWLYQNRVTDFADMTNLPKRLREQLASS 76 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 FSI + V ++ S DGT K+L + IETV + ++CV++QVGC + Sbjct: 77 FSITTLKTVVKQTSKDGTIKFLFE-----LHDGYSIETVLMRHHYGNSVCVTTQVGCRIG 131 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C+FC + L R+L A EI+ QV+ + L D ++S+IV+MG+ Sbjct: 132 CTFCASTLGGLKRHLEAGEIVAQVVQVQKALDD--------------TNERVSSIVVMGI 177 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 GEP N+D + K L I + GL+ R IT+STSG +P I + +E + + AISLHA Sbjct: 178 GEPFDNYDALIKFLRIVNHPKGLNIGARHITVSTSGIIPKIYQFADEGMQINFAISLHAP 237 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 +N+LR L+PIN+ YPL L++A R+Y RR+TFEY + G+ND A L +++ Sbjct: 238 TNELRTKLMPINKAYPLPKLMEAVRYYIE-KTGRRVTFEYGLFGGVNDQLEHAEQLAELI 296 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 KG+ +NLIP N P Y+ + + I F +K+ G + IR G DI AACGQL+ Sbjct: 297 KGLKCHVNLIPVNYVPERNYVRTPRSQIFAFERALKKHGINVTIRREHGHDIDAACGQLR 356 Query: 367 SLSKR 371 + ++ Sbjct: 357 AKERK 361 >gi|299821377|ref|ZP_07053265.1| cfr family radical SAM enzyme [Listeria grayi DSM 20601] gi|299817042|gb|EFI84278.1| cfr family radical SAM enzyme [Listeria grayi DSM 20601] Length = 367 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 135/382 (35%), Positives = 219/382 (57%), Gaps = 32/382 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K S+ G+ E+L + L + + R QIW W+Y + +R F M+++ +E L Sbjct: 1 MSKSSIYGITLEKLTDWL----VERDQKGFRAKQIWDWLYRKRVRSFAEMTNVPKETLAL 56 Query: 64 LNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L + F + EI+ E S DGT K+L + + IETV + +K ++CV++Q Sbjct: 57 LEESFVMETLEKEIIQE--SKDGTTKYLFKLQDGNL-----IETVLMKQKYGLSVCVTTQ 109 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC++ C+FC +G K R+L+A EI+ Q++ + L D E ++S+ Sbjct: 110 VGCNIGCTFCASGILKKSRDLSAGEIVEQIMNVQYYLDDRGSDE------------RVSH 157 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLA 240 IV+MG+GEP N++N+ L + + GL+ R IT+STSG P I E++ V LA Sbjct: 158 IVVMGIGEPFDNYENLMNFLHVVNSDSGLAIGARHITVSTSGLAPKIKEFADEDLQVNLA 217 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ISLHA +N+LR ++ INR + +E L++A +Y +N RR+TFEY+MLK +ND ++A Sbjct: 218 ISLHAPNNELRTQIMRINRTFSIETLMEAIEYYIEKTN-RRVTFEYIMLKDVNDHVKEAE 276 Query: 301 NLIKILKGIP--AKINLIPFNP-WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 L ++++ A +N+IP+NP +Y S ++ I F +K++G + +R G D Sbjct: 277 ELAQLIRPYSQLAYVNMIPYNPVAEHIDYERSTEESINAFYHVLKKNGINCVVRREHGTD 336 Query: 358 ILAACGQLKSLSKRIPKVPRQE 379 I AACGQL+ SK+I +V +E Sbjct: 337 IDAACGQLR--SKQIKRVGIRE 356 >gi|56419709|ref|YP_147027.1| ribosomal RNA large subunit methyltransferase N [Geobacillus kaustophilus HTA426] gi|81347651|sp|Q5L0S1|RLMN_GEOKA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|56379551|dbj|BAD75459.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 365 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 129/365 (35%), Positives = 201/365 (55%), Gaps = 25/365 (6%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 S+ + +EL+E L + Q R +QI++W+Y + DF M+++ + +R L Sbjct: 21 SIYSLTLDELKEWL----VAQGEKPFRATQIYEWLYQNRVTDFADMTNLPKRLREQLASS 76 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 FSI + V ++ S DGT K+L + IETV + ++CV++QVGC + Sbjct: 77 FSITTLKTVVKQTSKDGTIKFLFE-----LHDGYSIETVLMRHNYGNSVCVTTQVGCRIG 131 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C+FC + L R+L A EI+ QV+ + L D ++S+IV+MG+ Sbjct: 132 CTFCASTLGGLKRHLEAGEIVAQVVQVQKALDD--------------TNERVSSIVVMGI 177 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 GEP N+D + K L I + GL+ R IT+STSG +P I + +E + + AISLHA Sbjct: 178 GEPFDNYDALIKFLRIVNHPKGLNIGARHITVSTSGIIPKIYQFADEGMQINFAISLHAP 237 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 +N+LR L+PIN+ YPL L++A R+Y RR+TFEY + G+ND A L +++ Sbjct: 238 TNELRTKLMPINKAYPLPKLMEAVRYYIE-KTGRRVTFEYGLFGGVNDQLEHAEQLAELI 296 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 KG+ +NLIP N P Y+ + + I F +K+ G + IR G DI AACGQL+ Sbjct: 297 KGLKCHVNLIPVNYVPERNYVRTPRSQIFAFERALKKHGINVTIRREHGHDIDAACGQLR 356 Query: 367 SLSKR 371 + ++ Sbjct: 357 AKERK 361 >gi|237711138|ref|ZP_04541619.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|265750725|ref|ZP_06086788.1| cfr family radical SAM enzyme [Bacteroides sp. 3_1_33FAA] gi|229454982|gb|EEO60703.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|263237621|gb|EEZ23071.1| cfr family radical SAM enzyme [Bacteroides sp. 3_1_33FAA] Length = 349 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 129/369 (34%), Positives = 194/369 (52%), Gaps = 29/369 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G +E+++ + +G+P + QI W+Y + + M+++S + R L Sbjct: 5 KTALLGRTLDEIQQIVRNLGMP----KFAAKQIASWLYDKKVETIDEMTNLSLKHREALK 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + + V+E S DGT K+L R P R IE VYIP++ R TLCVSSQVGC Sbjct: 61 EGYEVGASAPVEEMRSVDGTVKYLFRTPTRNF-----IEAVYIPDEDRATLCVSSQVGCK 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q NLTA +IL Q+ IP K++N+V M Sbjct: 116 MNCKFCMTGKQGFTANLTANQILNQIY------------------SIPE-REKLTNLVFM 156 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEP N D V K L I + G +S +RIT+S+ G + R E LAIS+H Sbjct: 157 GMGEPFDNLDEVLKVLEILTSEYGYGWSPKRITVSSVGLKKGLERFLNESDCHLAISMHT 216 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 R L+P + + + +ID +Y S RR++FEY++ KG+NDS A ++K+ Sbjct: 217 PIPSQRRDLMPAEKAFSITEIIDILHNY-DFSKQRRLSFEYIVFKGVNDSLIYAKEIVKL 275 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+GI ++NLI F+ P + D + + TF + + + G + IR RG DI AACG L Sbjct: 276 LRGIECRVNLIRFHAIPDVDLEGVDMEAMTTFRDYLTQHGVFATIRASRGEDIFAACGML 335 Query: 366 KSLSKRIPK 374 + ++ K Sbjct: 336 STAKQQKEK 344 >gi|261419372|ref|YP_003253054.1| ribosomal RNA large subunit methyltransferase N [Geobacillus sp. Y412MC61] gi|319766187|ref|YP_004131688.1| radical SAM enzyme, Cfr family [Geobacillus sp. Y412MC52] gi|261375829|gb|ACX78572.1| radical SAM enzyme, Cfr family [Geobacillus sp. Y412MC61] gi|317111053|gb|ADU93545.1| radical SAM enzyme, Cfr family [Geobacillus sp. Y412MC52] Length = 365 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 129/365 (35%), Positives = 201/365 (55%), Gaps = 25/365 (6%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 S+ + +EL+E L + Q R +QI++W+Y + DF M+++ + +R L Sbjct: 21 SIYSLTLDELKEWL----VAQGEKPFRATQIYEWLYKNRVTDFADMTNLPKRLREQLASS 76 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 FSI + V ++ S DGT K+L + IETV + ++CV++QVGC + Sbjct: 77 FSITTLKTVVKQTSKDGTIKFLFE-----LHDGYSIETVLMRHNYGNSVCVTTQVGCRIG 131 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C+FC + L R+L A EI+ QV+ + L D ++S+IV+MG+ Sbjct: 132 CTFCASTLGGLKRHLEAGEIVAQVVQVQKALDD--------------TNERVSSIVVMGI 177 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 GEP N+D + K L I + GL+ R IT+STSG +P I + +E + + AISLHA Sbjct: 178 GEPFDNYDALIKFLRIVNHPKGLNIGARHITVSTSGIIPKIYQFADEGMQINFAISLHAP 237 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 +N+LR L+PIN+ YPL L++A R+Y RR+TFEY + G+ND A L +++ Sbjct: 238 TNELRTKLMPINKAYPLPKLMEAVRYYIE-KTGRRVTFEYGLFGGVNDQLEHAEQLAELI 296 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 KG+ +NLIP N P Y+ + + I F +K+ G + IR G DI AACGQL+ Sbjct: 297 KGLKCHVNLIPVNYVPERNYVRTPRSQIFAFERALKKHGINVTIRREHGHDIDAACGQLR 356 Query: 367 SLSKR 371 + ++ Sbjct: 357 AKERK 361 >gi|223984316|ref|ZP_03634459.1| hypothetical protein HOLDEFILI_01753 [Holdemania filiformis DSM 12042] gi|223963716|gb|EEF68085.1| hypothetical protein HOLDEFILI_01753 [Holdemania filiformis DSM 12042] Length = 347 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 124/357 (34%), Positives = 206/357 (57%), Gaps = 25/357 (7%) Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76 LEE +L +G + R QI++W+Y + F M+D+S+E+ L + F I ++V Sbjct: 12 LEELVLSLGWK----KYRADQIFQWLYRKHATSFDQMTDLSKEMIAALKEQFCINPIQLV 67 Query: 77 DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136 ++++S DGT K+L +G +E V + +LCV+SQ+GC++ C+FC +G Sbjct: 68 EKQVSRDGTVKFLFE-----LGDGALVECVLMTYNYGRSLCVTSQIGCNMGCTFCASGLL 122 Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196 K R+LT+ E++ QV+ + + + +IS++V+MG GEP N+DN Sbjct: 123 KKQRDLTSGEMVAQVMTVQ--------------LELDKEEDRISHVVVMGTGEPFDNYDN 168 Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLAISLHAVSNDLRNILV 255 V + + GL+ R IT+STSG +P+I R E LAISLHA +++LR+ ++ Sbjct: 169 VLNFCNTINHDKGLAIGARHITISTSGLIPSIDRFAAEHKQYNLAISLHAPTDELRSRIM 228 Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINL 315 P+N+ YPL L+ R Y + N RR+TFEY++L+G+ND+ A+ L +++G+ A +NL Sbjct: 229 PVNKAYPLGPLMACLRRYS-VENNRRLTFEYILLQGVNDTNEMAVKLAALIRGMNAYVNL 287 Query: 316 IPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRI 372 IP+N Y +D K + F + + + G + +R G DI AACGQL++ +R+ Sbjct: 288 IPYNQVDENGYKSTDYKSAMRFYDVLMKQGVKATLRQEHGNDIDAACGQLRAKHERM 344 >gi|50914628|ref|YP_060600.1| ribosomal RNA large subunit methyltransferase N [Streptococcus pyogenes MGAS10394] gi|139473446|ref|YP_001128162.1| ribosomal RNA large subunit methyltransferase N [Streptococcus pyogenes str. Manfredo] gi|81371810|sp|Q5XAZ6|RLMN_STRP6 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829905|sp|A2RDK1|RLMN_STRPG RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|50903702|gb|AAT87417.1| Florfenicol resistance protein [Streptococcus pyogenes MGAS10394] gi|134271693|emb|CAM29926.1| radical SAM superfamily protein [Streptococcus pyogenes str. Manfredo] Length = 359 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 132/368 (35%), Positives = 209/368 (56%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+EL ++ G Q R +QIW W+Y + ++ F+ M++IS++ +LN Sbjct: 2 KPSIYSLTRDELIAWAVERGQKQ----FRATQIWDWLYKKRVQSFEEMTNISKDFVSILN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + +V E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DSFCVNPLKQRVVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L + EI Q++L + D G ++S++V Sbjct: 111 CNIGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDD------------RKQGERVSHVV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+ NV L + +D GL+ R IT+STSG I E + V LA+S Sbjct: 159 VMGIGEPFDNYKNVMCFLRVINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +NDLR+ ++ +NR +PLE L A +Y +N RR+TFEY+ML +NDS + A L Sbjct: 219 LHAPNNDLRSRIMRVNRSFPLEKLFSAIEYYIEKTN-RRVTFEYIMLNEVNDSIKQAQEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 + K I + +NLIP+NP +Y S ++ ++ F + +K++G + +R G DI Sbjct: 278 ADLTKTIRKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDVLKKNGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|329962041|ref|ZP_08300052.1| 23S rRNA m2A2503 methyltransferase [Bacteroides fluxus YIT 12057] gi|328530689|gb|EGF57547.1| 23S rRNA m2A2503 methyltransferase [Bacteroides fluxus YIT 12057] Length = 346 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 131/364 (35%), Positives = 195/364 (53%), Gaps = 29/364 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K+ L+G+ EL+ + +G+P R QI W+Y + + M+++S + R Sbjct: 1 MQKQPLLGLTLSELQSVVKNLGMPGFAAR----QIASWLYDKKVTSIDEMTNLSLKHREY 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L + + VD S DGT K+L + G +E VYIP++ R TLCVSSQVG Sbjct: 57 LKDAYEVGAAAPVDAMRSIDGTVKYLYQ-----AGEGHFVEAVYIPDEDRATLCVSSQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG Q NLTA +I+ Q+ P + K++N+V Sbjct: 112 CKMNCKFCMTGKQGFTANLTANQIINQI-------SSLPERD------------KLTNVV 152 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N D V K+L I + S G S+S +RITLS+ G + R EE LA+SL Sbjct: 153 MMGMGEPLDNLDEVLKALEIMTASYGYSWSPKRITLSSVGLRKGLQRFIEESDCHLAVSL 212 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H R L+P + + + +++ R+Y S RR++FEY++ KG+NDS A L+ Sbjct: 213 HTPVPLQRRELMPAEKAFSITEIVELLRNYD-FSKQRRLSFEYIVFKGVNDSLLYAKELL 271 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+L+G+ +INLI F+ PG +D + + T + + G + IR RG DI AACG Sbjct: 272 KLLRGLDCRINLIRFHAIPGVGLEGADMETMTTLRDYLTSHGLFTTIRASRGEDIFAACG 331 Query: 364 QLKS 367 L + Sbjct: 332 MLST 335 >gi|110639497|ref|YP_679706.1| hypothetical protein CHU_3124 [Cytophaga hutchinsonii ATCC 33406] gi|123354303|sp|Q11QF0|RLMN_CYTH3 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|110282178|gb|ABG60364.1| 23S rRNA m(2)A-2503 methyltransferase [Cytophaga hutchinsonii ATCC 33406] Length = 365 Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 132/363 (36%), Positives = 201/363 (55%), Gaps = 24/363 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +KK+ + + EEL++ + G R+ Q+++W++ R R F+ M+++S+E R L Sbjct: 20 IKKKCIRSLSAEELKDFFVASG----EKAFRSRQVYEWLWKRSARSFEQMTNLSKETRTL 75 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +FSI I +++S DGT ++F + G + +E V IP R T C+SSQVG Sbjct: 76 LENNFSINPVTISQKQVSTDGT----IKFGFKLHDGYL-VEGVLIPADDRMTACISSQVG 130 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 CSLTC FC TG RNL EI QV+L + E P ++NIV Sbjct: 131 CSLTCKFCATGYMDRKRNLEPYEIYDQVVLIKEAAE--------EHYQTP-----LTNIV 177 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MGMGEPL N+ NV K + + GL + +RITLST+G I ++G+E + LA+S Sbjct: 178 LMGMGEPLLNYTNVLKGIDKVTSEEGLHIASKRITLSTAGIAKMITKLGDEKVKFRLALS 237 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA ++ RN ++PIN L +L ++ H+ + + +TFEY++ G+ND+ +DA L Sbjct: 238 LHAANDVKRNTIMPINETNNLNVLKESLLHFCKETGSS-VTFEYIVFDGVNDTAQDAKEL 296 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K IP KIN+I +NP +++ + + F + + G IR RG DI AAC Sbjct: 297 YAFAKNIPCKINIIEYNPIQEADFMNTSVDKLEQFKKVLTDKGIIVNIRRSRGKDIDAAC 356 Query: 363 GQL 365 GQL Sbjct: 357 GQL 359 >gi|332361790|gb|EGJ39594.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1056] Length = 362 Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 132/368 (35%), Positives = 212/368 (57%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+E+ ++ Q + R +QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQEM----IEWAEDQGEKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIATLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI+ Q++L + D G ++ ++S+IV Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+S Sbjct: 159 VMGIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +NDLR ++ INR +P+E L A +Y +N RR+TFEY+ML +ND A L Sbjct: 219 LHAPNNDLRTSIMRINRSFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQAKEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++LK I + +NLIP+NP +Y S ++ ++ F + +K++G + +R G DI Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|225619727|ref|YP_002720984.1| putative Fe-S-cluster redox enzyme [Brachyspira hyodysenteriae WA1] gi|225214546|gb|ACN83280.1| Predicted Fe-S-cluster redox enzyme [Brachyspira hyodysenteriae WA1] Length = 342 Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 138/365 (37%), Positives = 210/365 (57%), Gaps = 34/365 (9%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S++ + +EL + ++ P+ H SQI WIY + F+ MS+I + +R+LL Sbjct: 3 KKISIMNVSEDELSKFCVENNFPKFH----ASQILNWIYKKYAVSFEEMSNIPKNLRNLL 58 Query: 65 NQHFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 ++++ I +I E IS D GT+K L+ + +IE+V + +K R T C+SSQV Sbjct: 59 DEYYFIHNSKI--ETISEDEYGTQKLLISLYDK-----KKIESVILNKKDRVTFCLSSQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC C+FC TG+ L RNLTA+EIL + LL R +V +K+++I Sbjct: 112 GCGYGCAFCATGSMGLSRNLTADEILAEFLLMR------------------AVTKKVNSI 153 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241 V MGMGEPL N N+ K++ + G + R IT+STSG V I ++ E ++ LA+ Sbjct: 154 VFMGMGEPLANTKNLFKAIDTINSFKGFNLGIRHITISTSGEVAGIKQLIERDLDCRLAV 213 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH++ ND+R+ ++PIN++YP+E L+ + Y + R ITFE+V++K +NDS DA Sbjct: 214 SLHSLKNDVRDKIMPINKRYPIENLMAILKRY-SRNGKRMITFEWVLIKDVNDSVNDAYR 272 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVT-FSECIKRSGYSSPIRTPRGLDILA 360 L+ + K P K+N+IP NP L KDI+ F +K +G R +G +ILA Sbjct: 273 LVNLKKEFPFKVNVIPMNPVEHAPELQRPNKDIILRFKSILKDNGIEVVERFKQGQEILA 332 Query: 361 ACGQL 365 CGQL Sbjct: 333 GCGQL 337 >gi|262048118|ref|ZP_06021005.1| hypothetical protein SAD30_1894 [Staphylococcus aureus D30] gi|259163684|gb|EEW48239.1| hypothetical protein SAD30_1894 [Staphylococcus aureus D30] Length = 364 Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 127/371 (34%), Positives = 207/371 (55%), Gaps = 25/371 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 K+S+ + +E++ L++ G + R QI++W+Y + + M+++S+++R L Sbjct: 16 FDKQSIYSLRFDEMQNWLVEQG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKDLRQL 71 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +F++ V ++ S DGT K+L + IETV + ++CV++QVG Sbjct: 72 LKDNFTVTTLTTVVKQESKDGTIKFLFE-----LQDGYTIETVLMRHDYGNSVCVTTQVG 126 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C+FC + L RNL A EI+ QVL + L + ++S IV Sbjct: 127 CRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKAL--------------DATEERVSQIV 172 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+D + L I +D L+ R IT+STSG +P I +E I + A+S Sbjct: 173 IMGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFADEDIQINFAVS 232 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +++R+ L+PINR Y +E LI+A ++Y +N RR+TFEY + G+ND A L Sbjct: 233 LHAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTN-RRVTFEYGLFGGVNDQLEHAREL 291 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++KG+ +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AAC Sbjct: 292 AHLIKGLNCHVNLIPVNHVPERNYVKTAKNDIFKFEKELKRLGINATIRREQGSDIDAAC 351 Query: 363 GQLKSLSKRIP 373 GQL+ +++ Sbjct: 352 GQLRVKERQVE 362 >gi|225010483|ref|ZP_03700954.1| radical SAM enzyme, Cfr family [Flavobacteria bacterium MS024-3C] gi|225005312|gb|EEG43263.1| radical SAM enzyme, Cfr family [Flavobacteria bacterium MS024-3C] Length = 353 Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 133/350 (38%), Positives = 194/350 (55%), Gaps = 22/350 (6%) Query: 18 EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD 77 +EAL + Q R +Q+++W++ +G F+ M++IS+E R L HF I + + Sbjct: 15 KEALRTFFVTQGQSAFRGNQVYEWLWQKGAHSFESMTNISKETRAFLETHFVINHIRVDQ 74 Query: 78 EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137 + S DGT K +R + +E+V IP K+R T CVSSQVGCSL C FC T K Sbjct: 75 MQRSNDGTIKNAVRLHDNLV-----VESVLIPTKTRTTACVSSQVGCSLDCKFCATSRLK 129 Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197 +RNL +EI QV+ I+ R +SNIV MGMGEPL N++NV Sbjct: 130 RMRNLQPDEIYDQVVA-------------IDQQSRLYFNRPLSNIVFMGMGEPLMNYNNV 176 Query: 198 KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM--LAISLHAVSNDLRNILV 255 K++ +D GL+ S +RI +STSG VP + R E GV LA+SLH+ + +R ++ Sbjct: 177 LKAIEKITDPEGLAMSPKRIIVSTSG-VPKMIRKMAEDGVKFKLAVSLHSAIDSVRTTIM 235 Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINL 315 P N +PL L +A + + + +R IT+EYV+ KGIND+ L++ K PAK+NL Sbjct: 236 PFNETFPLAQLREALQFWYEKTKSR-ITYEYVVWKGINDNKAAIDALVEFCKFAPAKVNL 294 Query: 316 IPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I +NP + + Q I + ++R + +R RG DI AACGQL Sbjct: 295 IEYNPIDDGMFSQASQAAIDAYVNTLERHNITCTVRRSRGKDIDAACGQL 344 >gi|296271697|ref|YP_003654328.1| radical SAM enzyme, Cfr family [Arcobacter nitrofigilis DSM 7299] gi|296095872|gb|ADG91822.1| radical SAM enzyme, Cfr family [Arcobacter nitrofigilis DSM 7299] Length = 355 Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 126/346 (36%), Positives = 195/346 (56%), Gaps = 30/346 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q++ WIY + + M +I +++ L ++++I +I+ ++ S DG+ K+L + Sbjct: 20 FRAKQVYNWIYKKYANSYDEMKNIPNDLKEDLKENYAIDILKIIKKEKSSDGSIKYLFKL 79 Query: 93 PARCIGGPVEIETVYIPEKSRG-----------TLCVSSQVGCSLTCSFCYTGTQKLVRN 141 G VE + + EK G T+C+S+QVGC + C+FC T VRN Sbjct: 80 HD---GHTVETVFLLMREKQIGDDGVVEKGEKHTVCISTQVGCKVGCTFCLTAKGGFVRN 136 Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 LT EI+ Q++ + +I+ K NIV MGMGEPL N+ N S+ Sbjct: 137 LTVGEIVAQIV-------NMKRDNNIDE-------NKSLNIVFMGMGEPLDNYKNFVHSV 182 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRK 260 + S+ GL ++RR T+STSG I ++G E +G+ LAISLHAV ++LR+ L+P+N+ Sbjct: 183 KVFSEEEGLYINRRRQTVSTSGISSKIEKLGNENLGIQLAISLHAVDDELRSELIPMNKA 242 Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 Y ++ +IDA + +P + +++ FEY+++K ND A L+ +L GI AK+NLI FNP Sbjct: 243 YNIKSIIDAVKKFP-VDARKKVMFEYLVIKDKNDDIASAKKLLSLLDGIKAKVNLIYFNP 301 Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +PG Y + K +V F + G IR +GLDI AACGQLK Sbjct: 302 YPGTTYQRPESKKMVEFQNYLISKGLLCTIRESKGLDISAACGQLK 347 >gi|312867068|ref|ZP_07727278.1| 23S rRNA m2A2503 methyltransferase [Streptococcus parasanguinis F0405] gi|311097197|gb|EFQ55431.1| 23S rRNA m2A2503 methyltransferase [Streptococcus parasanguinis F0405] Length = 362 Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 128/342 (37%), Positives = 202/342 (59%), Gaps = 26/342 (7%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI--IYPEIVDEKISCDGTRKWL 89 + R +QIW+W+Y + ++ F+ M+++S+++ LN F + + IV E S DGT K+L Sbjct: 24 KFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLKQRIVQE--SADGTVKYL 81 Query: 90 LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149 P + IETV + + ++CV++QVGC++ C+FC +G K R+L EI+ Sbjct: 82 FELPDGML-----IETVLMRQHYGLSVCVTTQVGCNIGCTFCASGLIKKQRDLNNGEIVS 136 Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209 Q++L + D G ++ ++S+IV+MG+GEP N+DNV K + +D G Sbjct: 137 QIMLVQKYF-DERGQDE-----------RVSHIVVMGIGEPFDNYDNVLKFIRTVNDDKG 184 Query: 210 LSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 L+ R IT+STSG I E + V LA+SLHA +NDLR+ ++ INR +P+E L Sbjct: 185 LAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNDLRSSIMKINRAFPIEKLFA 244 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGC-E 325 A +Y +N RR+TFEY+ML +ND AL L ++LK I + +NLIP+NP + Sbjct: 245 AIEYYIETTN-RRVTFEYIMLNEVNDGVEQALELAELLKNIKKLSYVNLIPYNPVSEHDQ 303 Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 Y S ++ ++ F + +K+ G + +R G DI AACGQL+S Sbjct: 304 YSRSPKERVMAFYDTLKKQGVNCVVRQEHGTDIDAACGQLRS 345 >gi|125717485|ref|YP_001034618.1| radical SAM family Fe-S oxidoreductase [Streptococcus sanguinis SK36] gi|262282762|ref|ZP_06060530.1| cfr family radical SAM enzyme [Streptococcus sp. 2_1_36FAA] gi|205829909|sp|A3CLL3|RLMN_STRSV RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|125497402|gb|ABN44068.1| Fe-S-cluster redox enzyme/radical SAM enzyme, Cfr family, putative [Streptococcus sanguinis SK36] gi|262262053|gb|EEY80751.1| cfr family radical SAM enzyme [Streptococcus sp. 2_1_36FAA] gi|325697044|gb|EGD38931.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK160] gi|327458790|gb|EGF05138.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1057] gi|327473422|gb|EGF18842.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK408] gi|328945604|gb|EGG39755.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1087] gi|332362856|gb|EGJ40649.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK49] Length = 362 Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 132/368 (35%), Positives = 212/368 (57%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+E+ ++ Q + R +QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQEM----IEWAEAQGEKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI+ Q++L + D G ++ ++S+IV Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+S Sbjct: 159 VMGIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +NDLR ++ INR +P+E L A +Y +N RR+TFEY+ML +ND A L Sbjct: 219 LHAPNNDLRTSIMRINRSFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQAKEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++LK I + +NLIP+NP +Y S ++ ++ F + +K++G + +R G DI Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|332363981|gb|EGJ41760.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK355] Length = 362 Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 132/368 (35%), Positives = 212/368 (57%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+E+ ++ Q + R +QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQEM----IEWAEAQGEKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DQFVVNPLEQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI+ Q++L + D G ++ ++S+IV Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+S Sbjct: 159 VMGIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +NDLR ++ INR +P+E L A +Y +N RR+TFEY+ML +ND A L Sbjct: 219 LHAPNNDLRTSIMRINRSFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQAKEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++LK I + +NLIP+NP +Y S ++ ++ F + +K++G + +R G DI Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|29349780|ref|NP_813283.1| ribosomal RNA large subunit methyltransferase N [Bacteroides thetaiotaomicron VPI-5482] gi|253569856|ref|ZP_04847265.1| ribosomal RNA large subunit methyltransferase N [Bacteroides sp. 1_1_6] gi|81442826|sp|Q89ZK5|RLMN_BACTN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|29341691|gb|AAO79477.1| conserved hypothetical protein [Bacteroides thetaiotaomicron VPI-5482] gi|251840237|gb|EES68319.1| ribosomal RNA large subunit methyltransferase N [Bacteroides sp. 1_1_6] Length = 345 Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 130/364 (35%), Positives = 199/364 (54%), Gaps = 29/364 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K L+GM EL+ + ++G+P QI W+Y + + M+++S + R L Sbjct: 2 MSKYPLLGMTLIELQSLVKRLGMPG----FAAKQIASWLYDKKVTSIDEMTNLSLKYREL 57 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L Q++ + V+E S DGT K+L +P +G +E+VYIP+ R TLC+SSQVG Sbjct: 58 LKQNYEVGAEAPVEEMRSVDGTVKYL--YP---VGENHFVESVYIPDDERATLCISSQVG 112 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG Q NLTA +I+ Q+ P + K++N+V Sbjct: 113 CKMNCKFCMTGKQGYSANLTAHQIINQI-------HSLPERD------------KLTNVV 153 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N + V K+L I + S G ++S +RIT+ST G + R EE LAISL Sbjct: 154 MMGMGEPLDNLEEVLKALDILTGSYGYAWSPKRITVSTVGLRKGLRRFIEESDCHLAISL 213 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ R L+P + + + +++ ++Y S RR++FEY++ KG+NDS A L+ Sbjct: 214 HSPVTAQRAELMPAEKAFSITEMVELLKNYD-FSKQRRLSFEYIVFKGLNDSQVYAKELL 272 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+L+G+ ++NLI F+ PG +D + F + + G + IR RG DI AACG Sbjct: 273 KLLRGLDCRMNLIRFHSIPGVALEGADMDTMTRFRDYLTTHGLFTTIRASRGEDIFAACG 332 Query: 364 QLKS 367 L + Sbjct: 333 MLST 336 >gi|160892219|ref|ZP_02073222.1| hypothetical protein BACUNI_04683 [Bacteroides uniformis ATCC 8492] gi|156858697|gb|EDO52128.1| hypothetical protein BACUNI_04683 [Bacteroides uniformis ATCC 8492] Length = 350 Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 131/366 (35%), Positives = 197/366 (53%), Gaps = 29/366 (7%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 N ++K L+G+ EL+ + +G+P QI W+Y + + MS++S + R Sbjct: 3 NDMQKRPLLGLTLAELQNVVKNLGMPG----FSAKQIASWLYDKKVASIDEMSNLSLKHR 58 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 LL + + + VD S DGT K+L R G +E VYIP++ R TLCVSSQ Sbjct: 59 ELLKEIYEVGAEAPVDAMRSVDGTVKYLYR-----AGEGHFVEAVYIPDEDRATLCVSSQ 113 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC + C FC TG Q NLT+ +I+ Q+ P + K++N Sbjct: 114 VGCKMNCKFCMTGKQGFTANLTSNQIINQI-------SSLPERD------------KLTN 154 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 +VMMGMGEPL N D V K+L I + S G ++S +R+TLS+ G + R E LAI Sbjct: 155 VVMMGMGEPLDNLDEVLKALEIMTASYGYAWSPKRVTLSSVGLKKGLQRFIGESDCHLAI 214 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH+ R L+P + + + +++ R+Y S RR++FEY++ KG+NDS A Sbjct: 215 SLHSPIPLQRRELMPAEKAFSITEIVELLRNYD-FSKQRRLSFEYIVFKGVNDSLPYAKE 273 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L+K+L+G+ +INLI F+ PG +D + + F + + G + IR+ RG DI AA Sbjct: 274 LLKLLRGLDCRINLIRFHAIPGVNLEGADMETMTAFRDYLTSHGLFTTIRSSRGEDIFAA 333 Query: 362 CGQLKS 367 CG L + Sbjct: 334 CGMLST 339 >gi|294054447|ref|YP_003548105.1| radical SAM enzyme, Cfr family [Coraliomargarita akajimensis DSM 45221] gi|293613780|gb|ADE53935.1| radical SAM enzyme, Cfr family [Coraliomargarita akajimensis DSM 45221] Length = 384 Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 136/371 (36%), Positives = 206/371 (55%), Gaps = 28/371 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SL G E L EA+ G P R Q+ +W+Y + + + M+++ + R L+ Sbjct: 7 KPSLFGETLESLTEAVKAAGYPG----FRAKQVMEWLYKKRVGTWDAMTNLPKAFRGWLD 62 Query: 66 QHFSIIYP-EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYI--------PEKSRGTL 116 + + I+YP + + +K S D T+K+LL + + IETV I EKSR T+ Sbjct: 63 ETY-ILYPTQPLLDKRSDDVTQKFLLELEDKSL-----IETVLIRAPQTGVGQEKSRKTV 116 Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176 CVS QVGC+ C FC +G RNL E++ Q++ + ED Sbjct: 117 CVSIQVGCAYGCKFCASGLAGFRRNLGPAEVVSQLMHICRM-------EDAHTERAKDEI 169 Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-I 235 NIV MGMGEPL N+D + +++ I + GL+F RRIT+STSG P I ++ EE + Sbjct: 170 ASFDNIVFMGMGEPLANYDTLVRTIKILNAEWGLNFGARRITVSTSGVAPKIKQLAEEGV 229 Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 V LAISLH +N++RN ++P+N++YPLE LI A + + + R +T E++M++ INDS Sbjct: 230 AVRLAISLHGATNEVRNKIMPVNKRYPLEELIPAAKAFKE-RHGRMLTLEFIMIEDINDS 288 Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 A L KI K + A +N IP+N G E++ + F + ++++G S IR +G Sbjct: 289 IDQARELAKIAKDLHAHVNCIPYNKVEGLEWVRPSVRKQDAFVDYLRKAGVSVTIRREKG 348 Query: 356 LDILAACGQLK 366 DI AACGQL+ Sbjct: 349 HDINAACGQLR 359 >gi|224437065|ref|ZP_03658046.1| hypothetical protein HcinC1_03815 [Helicobacter cinaedi CCUG 18818] gi|313143537|ref|ZP_07805730.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] gi|313128568|gb|EFR46185.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] Length = 372 Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 135/360 (37%), Positives = 206/360 (57%), Gaps = 30/360 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q++ W+Y R + M +IS+ ++ L HF I V + S DG++K+L + Sbjct: 26 FRAKQVYHWLYHRYENNIALMDNISKAMQEHLQSHFIISQITPVQIEKSSDGSKKYLFQT 85 Query: 93 PARCIGGPVEI--------ETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTA 144 V I E+ I + + T+C+SSQ+GC + C+FC+T VRNL A Sbjct: 86 KDGHTFESVLIQMKSKELDESGEIVKGEKWTMCLSSQIGCKVGCAFCFTAKGGFVRNLNA 145 Query: 145 EEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIA 204 EI+ QV++ + + + P+ K NIV MGMGEPL N NV +++ I Sbjct: 146 GEIVEQVVMMKR-----------DSNIAPN---KRVNIVYMGMGEPLHNLANVSQAIKIL 191 Query: 205 SDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPL 263 ++ GLS S RR T+STSG P I +GE +GV LAISLHAVS++LR+ L+PIN+ Y + Sbjct: 192 AELDGLSISARRQTISTSGIAPKIKELGELNLGVQLAISLHAVSDELRSKLMPINKAYNI 251 Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPG 323 +++ R +P + + +R+ FEY+M+KG+ND + A L+ +L GI AK+NLI FNP G Sbjct: 252 AEVLNEVRAFP-VDSRKRVMFEYLMIKGVNDDIKAAKKLLALLNGIKAKVNLILFNPHEG 310 Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQIT 383 E+ +D+ F++ + + G IR +G+DI AACGQL+ K+ R+ +IT Sbjct: 311 SEFERPLMEDVRAFADFLVKKGLLCTIRESKGIDISAACGQLRE------KIKRENGEIT 364 >gi|217077834|ref|YP_002335552.1| radical SAM enzyme, Cfr family [Thermosipho africanus TCF52B] gi|217037689|gb|ACJ76211.1| radical SAM enzyme, Cfr family [Thermosipho africanus TCF52B] Length = 341 Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 137/365 (37%), Positives = 206/365 (56%), Gaps = 34/365 (9%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K++++ EEL +G+ + R Q++ WIY + + DF+ M+++S+E R +L+ Sbjct: 2 KKNILDFNYEELVNEFKSLGLE----KYRVDQVFDWIYKKKVFDFKDMTNLSKEHRRILD 57 Query: 66 QHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 ++F I P+++D +IS D T K+L P G IE+V + + R T C+S+QVGC Sbjct: 58 ENFGIQIPKLLDMQISKIDRTTKFLWELPD---GNT--IESVALFHEGRVTACISTQVGC 112 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI--SNI 182 + CSFC TG VRNLTA EI+ Q+L G E V RKI N+ Sbjct: 113 PVKCSFCATGQSGYVRNLTAGEIVSQIL----------GIE---------VHRKIRVGNV 153 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 V MGMGEPL N++N KS+ + ++ RRIT+ST G I + E + V LA+ Sbjct: 154 VYMGMGEPLLNYENTIKSVKMLNNKKMFGIGIRRITISTVGVPEKIIDLAESGLDVKLAL 213 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA +N R+ ++P+N++Y +E LI A + Y ++N R+T EY+++K ND P DA Sbjct: 214 SLHATTNFKRDQIIPLNKQYSIEELIFAVKKYQEITN-NRVTIEYILIKEFNDYPEDAEK 272 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++LKG+ +NLIP NP Y + + F E + + G IR +G DI AA Sbjct: 273 LAELLKGLSVYVNLIPVNP-VNPNYYRPSRWAMERFKEILTKYGIECEIRAEKGTDIDAA 331 Query: 362 CGQLK 366 CGQL+ Sbjct: 332 CGQLR 336 >gi|325690223|gb|EGD32227.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK115] Length = 362 Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 132/368 (35%), Positives = 212/368 (57%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+E+ ++ Q + R +QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQEM----IEWAEAQGEKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIATLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI+ Q++L + D G ++ ++S+IV Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+S Sbjct: 159 VMGIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +NDLR ++ INR +P+E L A +Y +N RR+TFEY+ML +ND A L Sbjct: 219 LHAPNNDLRTSIMRINRSFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQAKEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++LK I + +NLIP+NP +Y S ++ ++ F + +K++G + +R G DI Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDILKKNGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|167760434|ref|ZP_02432561.1| hypothetical protein CLOSCI_02808 [Clostridium scindens ATCC 35704] gi|167661933|gb|EDS06063.1| hypothetical protein CLOSCI_02808 [Clostridium scindens ATCC 35704] Length = 357 Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 128/366 (34%), Positives = 204/366 (55%), Gaps = 29/366 (7%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 + K+ + EEL+E + +IG R++QI++W++V+ F M+++S+E+R Sbjct: 1 MMSKKDICSYSFEELKEEIARIGEKD----FRSTQIYEWLHVKLAESFDEMTNLSKELRE 56 Query: 63 LLNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L + + I +++D +IS D T K+L C G IE+V + ++C+SSQ Sbjct: 57 KLKEEYEIAKVKMIDHQISKVDPTEKFLFEL---CDGNM--IESVLMKYNYGNSVCISSQ 111 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC + C FC + L R+L E+L Q+ + + G+ ++SN Sbjct: 112 AGCRMGCRFCASTIGGLERSLAPSEMLRQIYQIQKMTGE-----------------RVSN 154 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240 +V+MG GEPL N+DN K + I SD GL S+R IT ST G VPN+ R+ +E + + LA Sbjct: 155 VVVMGTGEPLDNYDNFVKFIHILSDEHGLHISQRNITASTCGIVPNMKRLADEGLQITLA 214 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLH + + R L+P+ +Y L ++DAC +Y RRITFEY +++G+ND DA Sbjct: 215 LSLHGSTQEKRKRLMPVADRYELPEVLDACDYYFE-KTGRRITFEYSLVEGVNDQMEDAR 273 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 LI IL+ +NLIP NP ++ D+K+ + F ++++G + IR RG DI Sbjct: 274 ELISILRKRNCHLNLIPVNPIKERDFKKPDRKNALEFKNKLEKNGINVTIRRERGSDIDG 333 Query: 361 ACGQLK 366 ACGQL+ Sbjct: 334 ACGQLR 339 >gi|329956949|ref|ZP_08297517.1| 23S rRNA m2A2503 methyltransferase [Bacteroides clarus YIT 12056] gi|328523706|gb|EGF50798.1| 23S rRNA m2A2503 methyltransferase [Bacteroides clarus YIT 12056] Length = 345 Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 130/362 (35%), Positives = 194/362 (53%), Gaps = 29/362 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ L+G+ EL+ + +G+P QI W+Y + M+++S + R LL Sbjct: 2 KQPLLGLTLTELQAVVKNLGMPG----FAAKQIASWLYDKKAASIDEMTNLSLKHRELLK 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + + VD S DGT K+L R G +E VYIP++ R TLCVSSQVGC Sbjct: 58 EIYEVGGEAPVDAMRSADGTVKYLYR-----AGEGHYVEAVYIPDEDRATLCVSSQVGCK 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q NLTA +I+ Q+ P + K++N+VMM Sbjct: 113 MNCKFCMTGKQGFTANLTANQIINQI-------NSLPERD------------KLTNVVMM 153 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N D V K+L + + S G +S +RITLS+ G + R EE LAISLH+ Sbjct: 154 GMGEPLDNLDEVLKALEVMTSSYGYGWSPKRITLSSVGLRKGLQRFIEESDCHLAISLHS 213 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 R L+P + + + +++ R+Y S RR++FEY++ KG+NDS A L+K+ Sbjct: 214 PVPLQRRELMPAEKAFSIAEIVELLRNYD-FSKQRRLSFEYIVFKGVNDSLLYAKELLKL 272 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G+ ++NLI F+ PG + +D + + T + + G + IR RG DI AACG L Sbjct: 273 LRGLDCRVNLIRFHAIPGVDLEGADMETMTTLRDYLTSHGLFTTIRASRGEDIFAACGML 332 Query: 366 KS 367 + Sbjct: 333 ST 334 >gi|306827020|ref|ZP_07460318.1| cfr family radical SAM enzyme [Streptococcus pyogenes ATCC 10782] gi|304430766|gb|EFM33777.1| cfr family radical SAM enzyme [Streptococcus pyogenes ATCC 10782] Length = 359 Score = 223 bits (568), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 134/384 (34%), Positives = 216/384 (56%), Gaps = 33/384 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+EL ++ G Q R +QIW W+Y + ++ F+ M++IS++ +LN Sbjct: 2 KPSIYSLTRDELIAWAVERGQKQ----FRATQIWDWLYKKRVQSFEEMTNISKDFVSILN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + +V E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DSFCVNPLKQRVVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L + EI Q++L + D G ++S++V Sbjct: 111 CNIGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDD------------RKQGERVSHVV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+ NV L + +D GL+ R IT+STSG I E + LA+S Sbjct: 159 VMGIGEPFDNYKNVMCFLRVINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQANLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +NDLR+ ++ +NR +PLE L A +Y +N RR+TFEY+ML +NDS + A L Sbjct: 219 LHAPNNDLRSSIMRVNRSFPLEKLFSAIEYYIEKTN-RRVTFEYIMLNEVNDSIKQAQEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 + K I + +NLIP+NP +Y S ++ ++ F + +K++G + +R G DI Sbjct: 278 ADLTKTIRKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDVLKKNGVNCVVRQEHGTDID 337 Query: 360 AACGQLKSLSKRIPKVPRQEMQIT 383 AACGQL+S + K R+++ +T Sbjct: 338 AACGQLRS---KTMKKDREKVTVT 358 >gi|222099877|ref|YP_002534445.1| Radical SAM enzyme, Cfr family [Thermotoga neapolitana DSM 4359] gi|254807220|sp|B9K7Z6|RLMN_THENN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|221572267|gb|ACM23079.1| Radical SAM enzyme, Cfr family [Thermotoga neapolitana DSM 4359] Length = 343 Score = 223 bits (568), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 134/362 (37%), Positives = 208/362 (57%), Gaps = 30/362 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++L+ + +EL + +G+ R R QI W++ + + +F M+++S++ R LL + Sbjct: 2 KNLLDLSYDELVSEITSLGLE----RYRADQILDWVFDKKVNNFDEMTNLSKQHRALLKE 57 Query: 67 HFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 HF+I + +++++++S DGT K+L IE+V I R T C+S+QVGC Sbjct: 58 HFTIPFLKLLEKRVSKIDGTTKFLWELEDGNT-----IESVMIFHPGRITACISTQVGCP 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC TG VRNLT EI+ Q+L E E G+KI N+V M Sbjct: 113 VGCTFCATGMSGFVRNLTTGEIVSQIL----------SMEKEE-------GKKIGNVVYM 155 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 GMGEPL N++N KS+ I + + RRIT+ST G I ++ +E + V LA+SLH Sbjct: 156 GMGEPLLNYENTIKSIRILNHKKMGNIGIRRITISTVGIPEKIIQLADEGLDVKLALSLH 215 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N R+ LVP+NRKY +E +++A + Y + +R+T EYV+++G+ND DA L + Sbjct: 216 APTNFKRDQLVPLNRKYSVEEILNAIKVYQ-MKTGKRVTIEYVLIRGVNDEISDAKKLAE 274 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 ILKG+ +NLIP NP S Q+ I+ F + +G + IR +G DI AACGQ Sbjct: 275 ILKGLKVFVNLIPVNPTVAGLSKPSRQR-ILAFKRILLENGIEAEIRQEKGSDIEAACGQ 333 Query: 365 LK 366 L+ Sbjct: 334 LR 335 >gi|163753003|ref|ZP_02160127.1| hypothetical protein KAOT1_12622 [Kordia algicida OT-1] gi|161326735|gb|EDP98060.1| hypothetical protein KAOT1_12622 [Kordia algicida OT-1] Length = 347 Score = 223 bits (568), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 128/361 (35%), Positives = 205/361 (56%), Gaps = 24/361 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ + + +E+L + + G R +Q+++W++ +G F M++IS+E R +L Sbjct: 6 KKDIRALSKEQLRDFFVSEGDKA----FRGNQVYEWLWQKGAHSFDDMTNISKETRKMLE 61 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++F I + + + S DGT K +R + +E+V IP +R T CVSSQVGCS Sbjct: 62 ENFVINHIRVDKMQRSNDGTIKNAVRLHDGLV-----VESVLIPTSTRTTACVSSQVGCS 116 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T K +RNL +EI QV+ D E + GR +SNIV M Sbjct: 117 LDCKFCATARLKRMRNLNPDEIYDQVVAI-----------DRESRLYH--GRPLSNIVFM 163 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244 GMGEPL N++NV K++ + GL S +RIT+STSG I ++ + E+ LA+SLH Sbjct: 164 GMGEPLMNYNNVLKAIEKITSEEGLGMSPKRITVSTSGVPKMIKKMADDEVKFKLAVSLH 223 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 + +++R ++P N +PL+ L +A ++ + +IT+EYV+ GIND +D L+K Sbjct: 224 SAIDEVRTEIMPFNEHFPLKDLKEALTYWYDKT-KNKITYEYVVWDGINDQQKDINALVK 282 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 K +P+K+NLI +NP ++ + K I + + ++++G + +R RG DI AACGQ Sbjct: 283 FCKDVPSKVNLIEYNPIDDGQFQQASNKAIDRYVDSLEQNGITVTVRRSRGKDIDAACGQ 342 Query: 365 L 365 L Sbjct: 343 L 343 >gi|160903334|ref|YP_001568915.1| radical SAM protein [Petrotoga mobilis SJ95] gi|205829799|sp|A9BIC0|RLMN_PETMO RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|160360978|gb|ABX32592.1| radical SAM enzyme, Cfr family [Petrotoga mobilis SJ95] Length = 347 Score = 223 bits (568), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 128/338 (37%), Positives = 192/338 (56%), Gaps = 26/338 (7%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKIS-CDGTRKWLL 90 + RT QI WIY + + DF+ M+++S++ R L+ +F I P IV +++S DGT K+LL Sbjct: 26 KFRTDQICDWIYKKRVFDFESMTNLSKDDRQKLSDNFKISIPHIVKKEVSKIDGTTKYLL 85 Query: 91 RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150 + VE +Y P SR C+S+QVGC L CSFC TG VRNL+ EI+ Q Sbjct: 86 ELEDK---NTVEAVIIYYP--SRTIACISTQVGCPLKCSFCSTGQSGYVRNLSTGEIIGQ 140 Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210 +L E + M + N+V MGMGEPL NF+NV +++ I + Sbjct: 141 LL----------AMEKDKEM-------DVKNVVYMGMGEPLLNFNNVVQTIEILNHPKMK 183 Query: 211 SFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 R IT+ST+G I VG+ L++SLHA +N R+ ++PIN KYP+E +I + Sbjct: 184 KLGARHITISTAGIPQKIEEVGDLNKEFRLSVSLHAPTNLQRDQIMPINHKYPVEQVIQS 243 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 CR Y +R+TFEY+++KG NDS DAL L+++ + +NLIP N P + Sbjct: 244 CRIYQK-KTKKRVTFEYILIKGFNDSKEDALKLVELFGDLKVMVNLIPVNENPAG-FEKP 301 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 ++ I F + + ++G + +R +G DI AACGQL++ Sbjct: 302 SKRFIQAFLDTLVKNGIDAVVRAEKGSDISAACGQLRT 339 >gi|309389025|gb|ADO76905.1| 23S rRNA m(2)A-2503 methyltransferase [Halanaerobium praevalens DSM 2228] Length = 347 Score = 223 bits (568), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 140/364 (38%), Positives = 205/364 (56%), Gaps = 28/364 (7%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 + R EL E L K G P R Q++ W+Y GI + M +I +++R L+ ++++ Sbjct: 7 LTRNELIEDLKKAGFPA----YRGEQVFNWLYKNGISKTEEMKNIPKKMRSYLDNNYNLN 62 Query: 72 YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP--EKSRGTLCVSSQVGCSLTCS 129 + ++ DGT K+L + + IE VY+P E R + C+S+QVGC L CS Sbjct: 63 NLKESKRSVAVDGTVKYLWQ-----LNDGENIEGVYLPFPESGRHSACISTQVGCGLGCS 117 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 FC TG L RNLT EI+ QVL + D G E ++SN+V MGMGE Sbjct: 118 FCATGIDGLKRNLTTGEIVEQVL---EIQKDISGSNFAE--------PRLSNLVFMGMGE 166 Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI---ARVGEEIGVMLAISLHAV 246 PL NFDN+ +++ I + + GL+ R++T+ST+G VP I A+V ++IG LAISLHA Sbjct: 167 PLANFDNLMQAVEILNSNQGLNIGMRKMTISTAGLVPEIKKLAKVNDQIG--LAISLHAP 224 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ LRN ++PIN+KY + L+ Y RR+TFEYV++ +NDSP ++ L ++L Sbjct: 225 NDRLRNKIMPINKKYNINQLLKTVIDYIE-KTGRRVTFEYVLMDSVNDSPELSVQLSELL 283 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +GI +NLIP NP P QK I +F + + +G +R G I AACGQLK Sbjct: 284 RGINCHVNLIPANPVPELGIERPVQKVIDSFYDTLVNNGIQVSLRKEMGSQIEAACGQLK 343 Query: 367 SLSK 370 K Sbjct: 344 RKEK 347 >gi|19746482|ref|NP_607618.1| ribosomal RNA large subunit methyltransferase N [Streptococcus pyogenes MGAS8232] gi|81632611|sp|Q8P058|RLMN_STRP8 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|19748687|gb|AAL98117.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232] Length = 359 Score = 223 bits (568), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 132/368 (35%), Positives = 209/368 (56%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+EL ++ G Q R +QIW W+Y + ++ F+ M++IS++ +LN Sbjct: 2 KPSIYSLTRDELIAWAVERGQKQ----FRATQIWDWLYKKRVQSFEEMTNISKDFVPILN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + +V E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DSFCVNPLKQRVVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L + EI Q++L + D G ++S++V Sbjct: 111 CNIGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDD------------RKQGERVSHVV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+ NV L + +D GL+ R IT+STSG I E + V LA+S Sbjct: 159 VMGIGEPFDNYKNVMCFLRVINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +NDLR+ ++ +NR +PLE L A +Y +N RR+TFEY+ML +NDS + A L Sbjct: 219 LHAPNNDLRSSIMRVNRSFPLEKLFSAIEYYIEKTN-RRVTFEYIMLNEVNDSIKQAQEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 + K I + +NLIP+NP +Y S ++ ++ F + +K++G + +R G DI Sbjct: 278 ADLTKTIRKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDVLKKNGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|94988886|ref|YP_596987.1| ribosomal RNA large subunit methyltransferase N [Streptococcus pyogenes MGAS9429] gi|94992778|ref|YP_600877.1| ribosomal RNA large subunit methyltransferase N [Streptococcus pyogenes MGAS2096] gi|122986917|sp|Q1JAS5|RLMN_STRPB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123382514|sp|Q1JKX6|RLMN_STRPC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|94542394|gb|ABF32443.1| radical SAM family enzyme [Streptococcus pyogenes MGAS9429] gi|94546286|gb|ABF36333.1| Radical SAM family enzyme [Streptococcus pyogenes MGAS2096] Length = 359 Score = 223 bits (568), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 132/368 (35%), Positives = 209/368 (56%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+EL ++ G Q R +QIW W+Y + ++ F+ M++IS++ +LN Sbjct: 2 KPSIYSLTRDELIAWAVERGQKQ----FRATQIWDWLYKKRVQSFEEMTNISKDFVSILN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + +V E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DSFCVNPLKQRVVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L + EI Q++L + D G ++S++V Sbjct: 111 CNIGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDD------------RKQGERVSHVV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+ NV L + +D GL+ R IT+STSG I E + V LA+S Sbjct: 159 VMGIGEPFDNYKNVMCFLRVINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +NDLR+ ++ +NR +PLE L A +Y +N RR+TFEY+ML +NDS + A L Sbjct: 219 LHAPNNDLRSRIMRVNRSFPLEKLFSAIEYYIEKTN-RRVTFEYIMLNEVNDSIKQAQEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 + K I + +NLIP+NP +Y S ++ ++ F + +K++G + +R G DI Sbjct: 278 ADLTKTIRKLSYVNLIPYNPVSEHDQYSRSLKERVLAFYDVLKKNGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|325568408|ref|ZP_08144775.1| cfr family radical SAM enzyme [Enterococcus casseliflavus ATCC 12755] gi|325158177|gb|EGC70330.1| cfr family radical SAM enzyme [Enterococcus casseliflavus ATCC 12755] Length = 361 Score = 223 bits (568), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 127/346 (36%), Positives = 202/346 (58%), Gaps = 26/346 (7%) Query: 28 QRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI--IYPEIVDEKISCDGT 85 Q + R +Q+W+W+Y + + F+ M+++ + + L+ F I + +V E + DGT Sbjct: 26 QNEKKFRANQVWEWLYEKRVTSFEEMTNLPKPLIEKLSAAFVINPLKQMVVQE--ASDGT 83 Query: 86 RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAE 145 K+L + P + IETV + ++ ++CV++QVGC++ C+FC +G K R+LTA Sbjct: 84 VKYLFQLPDNHM-----IETVLMRQEYGMSVCVTTQVGCNIGCTFCASGLLKKQRDLTAG 138 Query: 146 EILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS 205 EI+ Q++L + + + G ++S++V+MG+GEP N+DNV L I + Sbjct: 139 EIVAQIMLVQHYFDE------------RNEGERVSHVVVMGIGEPFDNYDNVMHFLQIIN 186 Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLE 264 D GL+ R IT+STSG I E + V LAISLHA +N++R ++ INR +P+E Sbjct: 187 DPKGLAIGARHITVSTSGLAHKIKEFAENGLQVNLAISLHAPNNEVRTSMMRINRSFPIE 246 Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWP 322 L+ A +Y +N RRITFEY+ML +ND P A L +LK + +NLIP+NP Sbjct: 247 KLMAAVDYYLEKTN-RRITFEYIMLDHVNDRPEHARQLAALLKDKKKLSYVNLIPYNPVS 305 Query: 323 GC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 +Y S + D++ F + +K++G + IR G DI AACGQL+S Sbjct: 306 EHDQYARSKKADVLAFYDILKKNGINCVIRKEHGTDIDAACGQLRS 351 >gi|78778287|ref|YP_394602.1| hypothetical protein Suden_2093 [Sulfurimonas denitrificans DSM 1251] gi|123727504|sp|Q30NR4|RLMN_SULDN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|78498827|gb|ABB45367.1| conserved hypothetical protein [Sulfurimonas denitrificans DSM 1251] Length = 356 Score = 223 bits (568), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 128/352 (36%), Positives = 200/352 (56%), Gaps = 34/352 (9%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI+ W+Y + F M +I Q+++ L + + + +IV +++S DGT K+L Sbjct: 21 FRAKQIYGWLYHNYAQSFDDMKNIPQQLKDELAKSYVVNLLKIVKKELSNDGTIKYLFEL 80 Query: 93 PARCIGGPVEIETVY-------------IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV 139 G IETV+ + ++++ T+CVS+QVGC + C+FC T Sbjct: 81 Q----DGKT-IETVWLKMKDEQIDEEGCVTQEAKYTICVSTQVGCKVGCAFCLTAKGGFT 135 Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199 R+LTA EI+ QV+ +L D + ++ NIV MGMGEPL N DN+ + Sbjct: 136 RDLTAGEIVAQVV---ALKKDNDHKHN-----------RMINIVYMGMGEPLDNLDNLSR 181 Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPIN 258 ++ I + GL S +R T+STSG I R+GE ++GV +AISLHAV ++LR L+P+N Sbjct: 182 AIEIFKEEDGLCISGKRQTVSTSGLSNKIDRLGEMDLGVHIAISLHAVDDELRTELIPMN 241 Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318 + + + +I+A + +P + +R+ FEY+++K ND A L+K+L GI AK+NLI F Sbjct: 242 KAHNISSIIEAVKRFP-IDTRKRVMFEYLVIKNKNDDLGSAKKLVKLLSGIKAKVNLIYF 300 Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 NP+P Y + D++ F E + G IR +G+DI AACGQLK ++ Sbjct: 301 NPYPDTPYERPQKSDMIAFQEYLINHGLLCTIRDSKGIDISAACGQLKEKTQ 352 >gi|325694144|gb|EGD36062.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK150] Length = 362 Score = 223 bits (568), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 132/368 (35%), Positives = 212/368 (57%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+E+ ++ Q + R +QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQEM----IEWAEAQGEKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI+ Q++L + D G ++ ++S+IV Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+S Sbjct: 159 VMGIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +NDLR ++ INR +P+E L A +Y +N RR+TFEY+ML +ND A L Sbjct: 219 LHAPNNDLRTSIMRINRSFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQAKEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++LK I + +NLIP+NP +Y S ++ ++ F + +K++G + +R G DI Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|223934018|ref|ZP_03625972.1| radical SAM enzyme, Cfr family [Streptococcus suis 89/1591] gi|302024309|ref|ZP_07249520.1| ribosomal RNA large subunit methyltransferase N [Streptococcus suis 05HAS68] gi|330833298|ref|YP_004402123.1| radical SAM enzyme, Cfr family [Streptococcus suis ST3] gi|223897307|gb|EEF63714.1| radical SAM enzyme, Cfr family [Streptococcus suis 89/1591] gi|329307521|gb|AEB81937.1| radical SAM enzyme, Cfr family [Streptococcus suis ST3] Length = 370 Score = 223 bits (568), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 129/342 (37%), Positives = 201/342 (58%), Gaps = 26/342 (7%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI--IYPEIVDEKISCDGTRKWL 89 + R +QIW+W+Y ++ F M+++ + + L +HF + + IV E S DGT K+L Sbjct: 24 KFRATQIWEWLYRSRVQSFAEMTNLPKSLIEKLEEHFVVNPLKQRIVQE--SKDGTIKYL 81 Query: 90 LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149 P + IETV + + ++CV++QVGC++ C+FC +G R+LT+ EI+ Sbjct: 82 FELPDGML-----IETVLMHQHYGLSVCVTTQVGCNIGCTFCASGLIPKQRDLTSGEIVA 136 Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209 Q++L + L + E ++S+IV+MG+GEPL N+DNV L + +D G Sbjct: 137 QIMLVQKYLDERNQNE------------RVSHIVVMGIGEPLDNYDNVMTFLRVVNDDKG 184 Query: 210 LSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 L+ R IT+STSG P I E + V LA+SLHA +NDLR+ ++ INRK+P+E+L + Sbjct: 185 LAIGARHITVSTSGLAPKIREFACEGVQVNLAVSLHAPNNDLRSSIMRINRKFPIEVLFE 244 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGC-E 325 A Y ++N RR+TFEY+ML +ND A L + K I + INLIP+NP + Sbjct: 245 AIEDYIKVTN-RRVTFEYIMLNEVNDGVEQAQELADLTKNIRKLSYINLIPYNPVSEHDQ 303 Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 Y S ++ + F + +K++G + +R G DI AACGQL+S Sbjct: 304 YSRSTKERTLAFFDVLKKNGVNCVVRQEHGTDIDAACGQLRS 345 >gi|153953998|ref|YP_001394763.1| ribosomal RNA large subunit methyltransferase N [Clostridium kluyveri DSM 555] gi|146346879|gb|EDK33415.1| Hypothetical protein CKL_1373 [Clostridium kluyveri DSM 555] Length = 359 Score = 223 bits (568), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 128/337 (37%), Positives = 193/337 (57%), Gaps = 25/337 (7%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD-EKISCDGTRKWLL 90 + R SQI WIY + DF M++IS+ V L ++F I PE+++ +K T K+L Sbjct: 23 KFRASQIMDWIYKKNQYDFNYMTNISKNVIEKLKKNFYIGIPELIEKQKSKSQDTFKFLY 82 Query: 91 RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150 +F + I IETV + + ++CVS+QVGC + C FC + +VRNLT+ EIL Q Sbjct: 83 KFQDKNI-----IETVVMKYRHGNSICVSTQVGCRMGCKFCASTVNGMVRNLTSGEILAQ 137 Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210 +L +++ + +ISNIV+MG GEPL N+DNV K L++ + L Sbjct: 138 ILKSQT-----------------EINERISNIVLMGSGEPLDNYDNVLKFLNMVNSKYSL 180 Query: 211 SFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 + +R ITLST G VP I + E + + LAISLH+ N R ++PI KY +E +I A Sbjct: 181 NIGQRHITLSTCGIVPKIMDLANENLQITLAISLHSPDNFSRRDMMPIANKYSIEEIIYA 240 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 C++Y + RR++FEY ++KG+NDS A L+++LKG+ +NLIP N ++ S Sbjct: 241 CKYYINKT-GRRVSFEYALVKGVNDSLEFAERLVQLLKGLLCHVNLIPVNEVKENDFKKS 299 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + +I F + + + IR G DI AACGQL+ Sbjct: 300 SEDNIKKFYNKLIENKIETTIRREMGSDIDAACGQLR 336 >gi|301166181|emb|CBW25756.1| conserved hypothetical protein [Bacteriovorax marinus SJ] Length = 352 Score = 223 bits (568), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 137/368 (37%), Positives = 209/368 (56%), Gaps = 29/368 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S + +EL +L + G+ + ++ W Y + + +IS+ + L+ Sbjct: 10 KRSFYNLNYDELVTSLQEEGLGTSAASL----LYNWHYKKK-QSSPCTHNISKATQKFLS 64 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +F PEI + IS D T K+L + + ++E+V IP ++ ++C+SSQVGC+ Sbjct: 65 DNFDFSLPEIDEVHISDDRTVKFLFK-----LHDSSKVESVLIPFHNKYSICLSSQVGCA 119 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLA-RSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + CSFC+TGTQ L RNL EIL Q L A R L + PG E +I NIV Sbjct: 120 MKCSFCFTGTQGLKRNLETSEILGQFLAAWRWLAENRPGEE------------RILNIVF 167 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243 MG GEPL NFD VK++ I G S ++IT+STSG++P + R EEI GV LA+SL Sbjct: 168 MGQGEPLHNFDAVKRACEIFLSKNGASIGTQKITISTSGYLPGLKRWEEEIPGVNLALSL 227 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALN 301 H+ + RN L+P+N+KY L ++ +H ++ ++ IT+EY+++K NDS DA Sbjct: 228 HSPFEEKRNELIPVNKKYSLPEVL---KHIDSITLQKKQFITYEYLLIKDFNDSVEDARA 284 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 + ++LKG A IN+IPFNP+PG +Y ++++F I + +R +G D+LAA Sbjct: 285 VGELLKGKEAYINIIPFNPFPGSKYKRPSDNEVLSFKSIIDEYKIPTLVRITKGDDVLAA 344 Query: 362 CGQLKSLS 369 CGQL + S Sbjct: 345 CGQLNTKS 352 >gi|281490670|ref|YP_003352650.1| radical SAM family enzyme [Lactococcus lactis subsp. lactis KF147] gi|281374439|gb|ADA63960.1| Radical SAM family enzyme [Lactococcus lactis subsp. lactis KF147] Length = 365 Score = 223 bits (568), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 133/372 (35%), Positives = 215/372 (57%), Gaps = 29/372 (7%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 S+ G+ R++L E ++ G + R +Q+W W+Y + ++ F+ MS++S LN+H Sbjct: 12 SIYGLTRDQLIEWAIENG----EKKFRATQVWDWLYRKRVQSFEEMSNLSAAFIDKLNEH 67 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F + E V + S DGT K+L P + + IETV + + ++CV++QVGC++ Sbjct: 68 FILNPLEQVVVQESADGTVKYLFMLPDKMM-----IETVLMRQSYGLSVCVTTQVGCNMG 122 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C+FC +G K R++TA EI+ Q++L + D G+ ++S++V+MG+ Sbjct: 123 CTFCASGILKKERDVTAGEIVSQIMLVQKYF-------DERGL-----DERVSHVVVMGI 170 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAISLHA 245 GEP N++++ L + +D GL+ R IT+ST GF+P + E + + LAISLHA Sbjct: 171 GEPFDNYEHLMNFLRVINDDNGLAIGARHITVSTCGFMPAKIKEFAHENLQINLAISLHA 230 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +N+LR L+ I R PLE L +A +Y +N RR+T+EY+ML G NDSP A L + Sbjct: 231 PNNELRTSLMRITRNAPLEKLFEAIDYYTETTN-RRVTYEYIMLSGENDSPEIAQQLADL 289 Query: 306 LK--GIPAKINLIPFNP-WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +K + +NLIP+NP +Y S + + F + +K++G + +R G DI AAC Sbjct: 290 IKPRNKLSYVNLIPYNPVAEHIKYERSTKDNTAKFYDVLKKNGINCVVRQEHGTDIDAAC 349 Query: 363 GQLKSLSKRIPK 374 GQL+ SK+I K Sbjct: 350 GQLR--SKQIKK 359 >gi|327402251|ref|YP_004343089.1| 23S rRNA m(2)A-2503 methyltransferase [Fluviicola taffensis DSM 16823] gi|327317759|gb|AEA42251.1| 23S rRNA m(2)A-2503 methyltransferase [Fluviicola taffensis DSM 16823] Length = 359 Score = 223 bits (567), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 131/362 (36%), Positives = 203/362 (56%), Gaps = 24/362 (6%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 EEL+ A++ G P R Q+++WI+ + + DF M++I + ++ L ++F Sbjct: 14 EELKAAIVGFGEPA----FRAKQVYEWIWKKNVHDFNAMANIGKSLQEKLQENFYFDGIT 69 Query: 75 IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134 I D++IS D T K G +E V IP +R T C+SSQVGCSL+C+FC TG Sbjct: 70 IEDQQISVDKTIKCAFGIE----GQSQVVEGVLIPTTNRMTACISSQVGCSLSCAFCATG 125 Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194 K++RNL+A EI+ QV+ ++L +SNIV MGMGEPL N+ Sbjct: 126 RLKMMRNLSAGEIVDQVVYLKNL-------------ATGKYNTNLSNIVYMGMGEPLLNY 172 Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNI 253 NV +S+ I +D GL S +RIT+ST+G I ++G +++ LA+SLHA ++ R+ Sbjct: 173 KNVVRSVDILTDENGLGMSPKRITVSTAGIAKMIRKLGDDDVKFNLALSLHAANDVKRSK 232 Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313 ++ IN L+ L +A ++ + + R+TFEY++ K ND DA L K +P KI Sbjct: 233 IMDINDTNNLDELSEALLYFHEKTGS-RVTFEYIIFKDFNDGLEDARELADFAKVVPCKI 291 Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECI-KRSGYSSPIRTPRGLDILAACGQLKSLSKRI 372 N+I +NP EY +D++ + F+ + ++ +R RG DI AACGQL + +K I Sbjct: 292 NIIEYNPIDDGEYQQADRQKVDDFARFLEEKCNLIVNVRRSRGKDIDAACGQLANKNKMI 351 Query: 373 PK 374 K Sbjct: 352 DK 353 >gi|219854612|ref|YP_002471734.1| hypothetical protein CKR_1269 [Clostridium kluyveri NBRC 12016] gi|219568336|dbj|BAH06320.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 362 Score = 223 bits (567), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 128/337 (37%), Positives = 193/337 (57%), Gaps = 25/337 (7%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD-EKISCDGTRKWLL 90 + R SQI WIY + DF M++IS+ V L ++F I PE+++ +K T K+L Sbjct: 26 KFRASQIMDWIYKKNQYDFNYMTNISKNVIEKLKKNFYIGIPELIEKQKSKSQDTFKFLY 85 Query: 91 RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150 +F + I IETV + + ++CVS+QVGC + C FC + +VRNLT+ EIL Q Sbjct: 86 KFQDKNI-----IETVVMKYRHGNSICVSTQVGCRMGCKFCASTVNGMVRNLTSGEILAQ 140 Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210 +L +++ + +ISNIV+MG GEPL N+DNV K L++ + L Sbjct: 141 ILKSQT-----------------EINERISNIVLMGSGEPLDNYDNVLKFLNMVNSKYSL 183 Query: 211 SFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 + +R ITLST G VP I + E + + LAISLH+ N R ++PI KY +E +I A Sbjct: 184 NIGQRHITLSTCGIVPKIMDLANENLQITLAISLHSPDNFSRRDMMPIANKYSIEEIIYA 243 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 C++Y + RR++FEY ++KG+NDS A L+++LKG+ +NLIP N ++ S Sbjct: 244 CKYYINKT-GRRVSFEYALVKGVNDSLEFAERLVQLLKGLLCHVNLIPVNEVKENDFKKS 302 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + +I F + + + IR G DI AACGQL+ Sbjct: 303 SEDNIKKFYNKLIENKIETTIRREMGSDIDAACGQLR 339 >gi|257469926|ref|ZP_05634018.1| florfenicol resistance protein [Fusobacterium ulcerans ATCC 49185] gi|317064156|ref|ZP_07928641.1| radical SAM domain-containing protein [Fusobacterium ulcerans ATCC 49185] gi|313689832|gb|EFS26667.1| radical SAM domain-containing protein [Fusobacterium ulcerans ATCC 49185] Length = 350 Score = 223 bits (567), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 136/367 (37%), Positives = 207/367 (56%), Gaps = 28/367 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + ++ELEE ++ +G+ + + + QI+ W++ + +RD ++++S + R LL Sbjct: 3 EKINLLNLNQQELEELVISLGMKKFYGK----QIFNWLHQKIVRDLNEITNLSLKDRELL 58 Query: 65 NQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQV 122 ++ I + ++ +++S D T K+L + G IETV + K R TLC+SSQV Sbjct: 59 SEKAYIPFLNLLKQQVSKIDKTEKFLFKLED---GNT--IETVLLRHKDKRNTLCISSQV 113 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C+FC TG VRNL EI+ QV L G I+NI Sbjct: 114 GCPVKCAFCATGQDGFVRNLDVNEIINQVYTVERRL--------------TKQGSNINNI 159 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAI 241 V MGMGEPL N NV K+L I S+ G++ SKR+IT+STSG VPNI ++ E++ + LAI Sbjct: 160 VFMGMGEPLLNLSNVLKALDILSNENGINISKRKITISTSGIVPNIEKILLEKLPIELAI 219 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH+ N R++++P+NR YPLE L + Y + RRI+FEY+M+ N S DA Sbjct: 220 SLHSAINAKRDMIIPVNRSYPLEDLYAILQEYQRQT-KRRISFEYIMINDFNVSDIDANA 278 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLDILA 360 L + +NLIP+NP G E+ +K I F +K + +R +G DI Sbjct: 279 LADFVHEFDHVVNLIPYNPVAGTEFERPSEKKIEKFFTFLKDVRKVNVTLRREKGTDIDG 338 Query: 361 ACGQLKS 367 ACGQL+ Sbjct: 339 ACGQLRQ 345 >gi|291534141|emb|CBL07254.1| 23S rRNA m(2)A-2503 methyltransferase [Megamonas hypermegale ART12/1] Length = 345 Score = 223 bits (567), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 129/362 (35%), Positives = 201/362 (55%), Gaps = 26/362 (7%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 ++ G+ EL + + +P + R QI +W+Y + F M+++S+++R L Q Sbjct: 3 NIFGLNLTELTSLITDLNLP----KFRAKQIIEWLYQKHATSFDEMTNLSKDLREKLAQE 58 Query: 68 FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 F+I + D S DG T K+LL F G + +ETV + + ++CVSSQ GC++ Sbjct: 59 FTIERAKSCDRLDSSDGKTTKFLLEF-----GDGIGVETVLMRQPYGNSICVSSQAGCNM 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 CSFC + + RNL+ EIL Q + + LL G +I+NIV+MG Sbjct: 114 GCSFCASTLHGMARNLSTGEILAQAMFIQELLN--------------QTGEQINNIVIMG 159 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 GEP+ N+DNV + + + L+ R IT+STSG VP I ++ +E + + L+ISLHA Sbjct: 160 SGEPMLNYDNVLNFIRLVHEPYCLNLGYRNITISTSGIVPGINKLAQENLPITLSISLHA 219 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +N LR L+PIN++YP+E +I A +Y + RRIT+EY+++ ND+ +A+ L K+ Sbjct: 220 PNNVLRTELMPINKRYPIEEVIKAAVNYAN-TTKRRITYEYILIDKYNDNMTEAVELCKL 278 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LK A +NLIP NP Y I F++ + ++ IR G DI AACGQL Sbjct: 279 LKNQLANVNLIPINPVKERNYNRPSLARIKAFAKYLNDHHLTATIRQEMGTDIQAACGQL 338 Query: 366 KS 367 ++ Sbjct: 339 RN 340 >gi|257867066|ref|ZP_05646719.1| ribosomal RNA large subunit methyltransferase N [Enterococcus casseliflavus EC30] gi|257873401|ref|ZP_05653054.1| ribosomal RNA large subunit methyltransferase N [Enterococcus casseliflavus EC10] gi|257877144|ref|ZP_05656797.1| ribosomal RNA large subunit methyltransferase N [Enterococcus casseliflavus EC20] gi|257801122|gb|EEV30052.1| ribosomal RNA large subunit methyltransferase N [Enterococcus casseliflavus EC30] gi|257807565|gb|EEV36387.1| ribosomal RNA large subunit methyltransferase N [Enterococcus casseliflavus EC10] gi|257811310|gb|EEV40130.1| ribosomal RNA large subunit methyltransferase N [Enterococcus casseliflavus EC20] Length = 361 Score = 223 bits (567), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 127/346 (36%), Positives = 202/346 (58%), Gaps = 26/346 (7%) Query: 28 QRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI--IYPEIVDEKISCDGT 85 Q + R +Q+W+W+Y + + F+ M+++ + + L+ F I + +V E + DGT Sbjct: 26 QNEKKFRANQVWEWLYEKRVTSFEEMTNLPKPLIEKLSAAFVINPLKQMVVQE--ASDGT 83 Query: 86 RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAE 145 K+L + P + IETV + ++ ++CV++QVGC++ C+FC +G K R+LTA Sbjct: 84 VKYLFQLPDNHM-----IETVLMRQEYGMSVCVTTQVGCNIGCTFCASGLLKKQRDLTAG 138 Query: 146 EILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS 205 EI+ Q++L + + + G ++S++V+MG+GEP N+DNV L I + Sbjct: 139 EIVAQIMLVQHYFDE------------RNEGERVSHVVVMGIGEPFDNYDNVMHFLQIIN 186 Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLE 264 D GL+ R IT+STSG I E + V LAISLHA +N++R ++ INR +P+E Sbjct: 187 DPKGLAIGARHITVSTSGLAHKIREFAENGLQVNLAISLHAPNNEVRTSMMRINRSFPIE 246 Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWP 322 L+ A +Y +N RRITFEY+ML +ND P A L +LK + +NLIP+NP Sbjct: 247 KLMAAVDYYLEKTN-RRITFEYIMLDHVNDRPEHARQLAALLKDKKKLSYVNLIPYNPVS 305 Query: 323 GC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 +Y S + D++ F + +K++G + IR G DI AACGQL+S Sbjct: 306 EHDQYARSKKADVLAFYDILKKNGINCVIRKEHGTDIDAACGQLRS 351 >gi|253574078|ref|ZP_04851420.1| cfr family radical SAM enzyme [Paenibacillus sp. oral taxon 786 str. D14] gi|251846555|gb|EES74561.1| cfr family radical SAM enzyme [Paenibacillus sp. oral taxon 786 str. D14] Length = 351 Score = 223 bits (567), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 137/375 (36%), Positives = 209/375 (55%), Gaps = 30/375 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K+S+ GM +++L LL G H R R +W+ +Y + + F M + E L Sbjct: 1 MNKQSIYGMTKDQLAAWLLDRG----HKRGRAEMVWEGLYRKRVTAFDAMEGVHPECLAL 56 Query: 64 LNQHFSIIYPEIVDEKI---SCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 L + F I E ++E + S DGT K+L R + IETV + K ++CV++ Sbjct: 57 LKEQFVI---ETLEEHVRQESIDGTIKFLFRLQDGNL-----IETVLMRHKFGLSVCVTT 108 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC++ CSFC +G K R+LT+ EI+ QV+ + L D +G G ++S Sbjct: 109 QVGCNIGCSFCASGLLKKSRDLTSGEIVEQVMKVQMHL-------DRQGK-----GERVS 156 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVML 239 +IV+MG+GEP N+DN+ L + D GL+ R IT+STSG I + ++ V L Sbjct: 157 HIVVMGIGEPFDNYDNMADFLRVIQDPKGLAIGPRHITVSTSGLADKIIEFADSDLQVNL 216 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA +N+LR ++ IN+ P+E L+ A +Y +N RR+T EY++LKG+ND A Sbjct: 217 AVSLHAPNNELRTRIMKINKAIPIEKLMAAIDYYLERTN-RRLTIEYILLKGVNDGTEHA 275 Query: 300 LNLIKILKGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 L +L +NLIP+NP +Y S+QK ++ F + +K+ G S +R G DI Sbjct: 276 QELADLLGDRFVNVNLIPYNPVDEHSQYQRSEQKSVLAFYDALKKRGLSVSVRLEHGADI 335 Query: 359 LAACGQLKSLSKRIP 373 AACGQL+S + P Sbjct: 336 DAACGQLRSKQLKQP 350 >gi|218290479|ref|ZP_03494599.1| radical SAM enzyme, Cfr family [Alicyclobacillus acidocaldarius LAA1] gi|218239500|gb|EED06695.1| radical SAM enzyme, Cfr family [Alicyclobacillus acidocaldarius LAA1] Length = 348 Score = 223 bits (567), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 121/340 (35%), Positives = 201/340 (59%), Gaps = 28/340 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIY----PEIVDEKISCDGTRKW 88 R Q+++W+Y + + F M+++ + +R LN+ I Y ++V + D T K+ Sbjct: 25 FRAVQLYEWMYQKRAKSFDEMTNLPKALRQRLNE---IAYLRSAEQVVRQDSKVDPTTKF 81 Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 LL +P V +E+V + + ++CVSSQVGC + C+FC + ++RN+TA E++ Sbjct: 82 LLAWP-----DGVTVESVLMRHRYGNSVCVSSQVGCKMGCTFCASTLGGMIRNMTAGEMV 136 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 QVL +++LL + +G+++S++V+MG GEP+ N+D V + + I ++ Sbjct: 137 EQVLHSQALLDE--------------IGQRVSSVVVMGSGEPMDNYDQVMRFIDIITNEH 182 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267 GL+ +R IT+ST G VP I R+ EE + LA+SLHA ++ +R ++P+N+ YP+ L+ Sbjct: 183 GLNIGQRHITVSTVGLVPGIRRLAEEGRNITLAVSLHAPNDAIRGRMMPVNKAYPIAKLM 242 Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL 327 +AC Y RRI+FEY ++ G NDS A L +++KG+P +NLIP N P Y Sbjct: 243 EACHDYY-RKTGRRISFEYALVAGENDSLECAKELAELVKGLPCHVNLIPVNYVPERGYR 301 Query: 328 CSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 +D+K I F + +G ++ IR G DI AACGQL++ Sbjct: 302 RTDRKQIFAFWRALLDAGVNATIRREMGHDIAAACGQLRA 341 >gi|317489233|ref|ZP_07947750.1| cfr family radical SAM enzyme [Eggerthella sp. 1_3_56FAA] gi|325832221|ref|ZP_08165220.1| 23S rRNA m2A2503 methyltransferase [Eggerthella sp. HGA1] gi|316911634|gb|EFV33226.1| cfr family radical SAM enzyme [Eggerthella sp. 1_3_56FAA] gi|325486057|gb|EGC88511.1| 23S rRNA m2A2503 methyltransferase [Eggerthella sp. HGA1] Length = 353 Score = 223 bits (567), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 128/358 (35%), Positives = 195/358 (54%), Gaps = 30/358 (8%) Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75 EL + ++G P RT Q+ +W+Y R + M+++ +R L + F + P + Sbjct: 20 ELASVMKELGQPA----FRTQQLQEWLYQRHASSYDEMTNLPGSLRATLAERFPLTMPTV 75 Query: 76 VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS--RGTLCVSSQVGCSLTCSFCYT 133 VD +IS DGTRK+L+ F + +ETV IP ++ R T+C S+Q GC + C+FC T Sbjct: 76 VDRQISKDGTRKYLVEF-----DDGIRVETVGIPSRNGDRLTVCFSTQAGCPIACAFCAT 130 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 G + RNLT EI+ QVL+ + ED+ G++++N V MG GEP N Sbjct: 131 GQEGFARNLTPGEIVDQVLIVQ---------EDM--------GKRVTNAVGMGQGEPFLN 173 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRN 252 +DN +L I + GL R I++ST G +P + R EE LA+SLHA +R+ Sbjct: 174 YDNTMAALRILNHKKGLEIGARHISVSTCGILPGLERFSEEPEQFTLAVSLHAARQPIRD 233 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312 +++P +Y L L +A ++Y +N RR+T EY+M++G+ND+P D L K + Sbjct: 234 LIMPNVARYELPSLKEALQNYVAKTN-RRVTLEYIMIEGVNDAPADLKALQKFCSNLLCH 292 Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 +NLIP N G E+ S + I + I + G + +R RG DI ACGQLK+ K Sbjct: 293 VNLIPINAIEGSEFQPSSPETINLWLSEISKKGTEATLRDSRGSDISGACGQLKNTFK 350 >gi|304404145|ref|ZP_07385807.1| radical SAM enzyme, Cfr family [Paenibacillus curdlanolyticus YK9] gi|304347123|gb|EFM12955.1| radical SAM enzyme, Cfr family [Paenibacillus curdlanolyticus YK9] Length = 356 Score = 223 bits (567), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 125/354 (35%), Positives = 198/354 (55%), Gaps = 25/354 (7%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 EEL+ + G P R Q++ W+YV+ +R F MS++ + R L+ F+ + Sbjct: 19 EELQAWVKDNGEPA----FRAGQLFDWLYVKRVRSFDEMSNLPKAFRQKLDDQFAFVTLS 74 Query: 75 IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134 + + S DGT K+L + IETV + ++CV++QVGC + C+FC + Sbjct: 75 EITKFESKDGTVKFLF-----GLHDNHAIETVVMRHNYGNSICVTTQVGCRVGCTFCAST 129 Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194 L RNLTA EI+ QV+ A+ LL + ++S+IV+MG GEP N+ Sbjct: 130 LGGLKRNLTAGEIVAQVVWAQQLLD--------------ATNERVSSIVIMGTGEPFENY 175 Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNI 253 + L I GL+ +R IT+STSG VPNI + +E + LAIS+HA ++ LR+ Sbjct: 176 EPTMNFLRIMIHEKGLNIGQRHITVSTSGIVPNIYKFADENTQINLAISIHAPNDALRSK 235 Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313 L+P+NR++P ++++ R+Y RRITFEY ++ G+ND P A L ++L+G+ + Sbjct: 236 LMPVNRRFPFNDVMESLRYYIA-KTGRRITFEYALIGGVNDRPEHAEELAQVLQGMLCHV 294 Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 NLIP N P Y+ + + DI F +++ ++ IR +G DI AACGQL++ Sbjct: 295 NLIPVNHVPERNYVRTPRDDIFEFQRILEKHKINATIRREQGHDIAAACGQLRA 348 >gi|15672161|ref|NP_266335.1| hypothetical protein L184159 [Lactococcus lactis subsp. lactis Il1403] gi|81621772|sp|Q9CJ27|RLMN_LACLA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|12723031|gb|AAK04277.1|AE006255_7 hypothetical protein L184159 [Lactococcus lactis subsp. lactis Il1403] Length = 365 Score = 223 bits (567), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 133/372 (35%), Positives = 215/372 (57%), Gaps = 29/372 (7%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 S+ G+ R++L E ++ G + R +Q+W W+Y + ++ F+ MS++S LN+H Sbjct: 12 SIYGLTRDQLIEWAIENG----EKKFRATQVWDWLYRKRVQSFEEMSNLSAAFIDKLNEH 67 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F + E V + S DGT K+L P + + IETV + + ++CV++QVGC++ Sbjct: 68 FILNPLEQVVVQESADGTVKYLFMLPDQMM-----IETVLMRQSYGLSVCVTTQVGCNMG 122 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C+FC +G K R++TA EI+ Q++L + D G+ ++S++V+MG+ Sbjct: 123 CTFCASGILKKERDVTAGEIVSQIMLVQKYF-------DERGL-----DERVSHVVVMGI 170 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAISLHA 245 GEP N++++ L + +D GL+ R IT+ST GF+P + E + + LAISLHA Sbjct: 171 GEPFDNYEHLMNFLRVINDDNGLAIGARHITVSTCGFMPAKIKEFAHENLQINLAISLHA 230 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +N+LR L+ I R PLE L +A +Y +N RR+T+EY+ML G NDSP A L + Sbjct: 231 PNNELRTSLMRITRNAPLEKLFEAIDYYTETTN-RRVTYEYIMLSGENDSPEIAQQLADL 289 Query: 306 LK--GIPAKINLIPFNP-WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +K + +NLIP+NP +Y S + + F + +K++G + +R G DI AAC Sbjct: 290 IKPRNKLSYVNLIPYNPVAEHIKYERSTKDNTAKFYDVLKKNGINCVVRQEHGTDIDAAC 349 Query: 363 GQLKSLSKRIPK 374 GQL+ SK+I K Sbjct: 350 GQLR--SKQIKK 359 >gi|237727504|ref|ZP_04557985.1| ribosomal RNA large subunit methyltransferase N [Bacteroides sp. D4] gi|229434360|gb|EEO44437.1| ribosomal RNA large subunit methyltransferase N [Bacteroides dorei 5_1_36/D4] Length = 349 Score = 223 bits (567), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 128/369 (34%), Positives = 194/369 (52%), Gaps = 29/369 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G +E+++ + +G+P + QI W+Y + + M+++S + R L Sbjct: 5 KTALLGRTLDEIQQIVRNLGMP----KFAAKQITSWLYDKKVETIDEMTNLSLKHRETLK 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + + V+E S DGT K+L R PA IE VYIP++ R TLCVSSQVGC Sbjct: 61 EGYEVGASAPVEEMRSVDGTVKYLFRTPAHNF-----IEAVYIPDEDRATLCVSSQVGCK 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q NL+A +IL Q+ IP K++N+V M Sbjct: 116 MNCKFCMTGKQGFTANLSAHQILNQIY------------------SIPE-REKLTNLVFM 156 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEP N D V K L I + G +S +RIT+S+ G + R E LAIS+H Sbjct: 157 GMGEPFDNLDEVLKVLEILTSEYGYGWSPKRITVSSVGLKKGLERFLNESDCHLAISMHT 216 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 R L+P + + + +ID +Y S RR++FEY++ KG+NDS A ++K+ Sbjct: 217 PIPSQRRDLMPAEKAFSITEIIDILHNY-DFSKQRRLSFEYIVFKGVNDSLIYAKEIVKL 275 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+GI ++NLI F+ P + D + +V F + + + G + IR RG DI AACG L Sbjct: 276 LRGIECRVNLIRFHAIPNVDLEGVDMETMVAFRDYLTQHGVFATIRASRGEDIFAACGML 335 Query: 366 KSLSKRIPK 374 + ++ K Sbjct: 336 STAKQQKEK 344 >gi|330996801|ref|ZP_08320673.1| 23S rRNA m2A2503 methyltransferase [Paraprevotella xylaniphila YIT 11841] gi|329572523|gb|EGG54174.1| 23S rRNA m2A2503 methyltransferase [Paraprevotella xylaniphila YIT 11841] Length = 348 Score = 222 bits (566), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 134/374 (35%), Positives = 203/374 (54%), Gaps = 29/374 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+GM EL+ +IG+P R Q+ +W+Y + + M++IS + R LLN Sbjct: 4 KIALLGMTLSELKSVAGEIGMPSFAAR----QMAEWLYGKKVASIDEMTNISAKNRCLLN 59 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + +++ VD + S DGT K+L R A GG VE TVYIP+ R TLCVSSQVGC Sbjct: 60 ERYTVGCLGPVDCQRSADGTVKYLYRTAA---GGYVE--TVYIPDGDRATLCVSSQVGCR 114 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q LTA +IL Q+ +P ++N+V M Sbjct: 115 MNCRFCMTGKQGFSGQLTAADILNQLY------------------SLPERD-TLTNVVFM 155 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 G GEPL N DNV ++ I + G ++S +RIT+ST G + R +E LA+SLH Sbjct: 156 GQGEPLDNLDNVLRATEILTADYGYAWSPKRITVSTVGLRKGLKRFLDESECHLAVSLHN 215 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 D R L+P Y L+ ++ R Y ++ RR++FEY M +G+ND+ A L+++ Sbjct: 216 PFADQRARLMPAENSYGLQEIVALLREYD-FTHQRRLSFEYTMFEGVNDTLAHAKELLRL 274 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L G+ ++NLI F+P PG + + ++ ++ F + + G S IR RG DI AACG L Sbjct: 275 LGGVECRMNLIRFHPVPGVDLKGTSEEGMLRFRDYLTGHGLFSTIRASRGQDIFAACGLL 334 Query: 366 KSLSKRIPKVPRQE 379 + ++ ++ + E Sbjct: 335 STAKQQGVELKKTE 348 >gi|218246284|ref|YP_002371655.1| ribosomal RNA large subunit methyltransferase N [Cyanothece sp. PCC 8801] gi|254807168|sp|B7K4N4|RLMN_CYAP8 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|218166762|gb|ACK65499.1| radical SAM enzyme, Cfr family [Cyanothece sp. PCC 8801] Length = 340 Score = 222 bits (566), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 137/370 (37%), Positives = 205/370 (55%), Gaps = 39/370 (10%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 + +E+L+G +EL + + K G P R Q+ +W+Y +G R +S + R Sbjct: 2 LVTEETLLGKSLDELTQWVEKQGQP----TYRGKQLHQWLYEKGARSLDEISVFPKTWRE 57 Query: 63 LLNQHFSIIYP---EIVDEK-ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118 L I YP +D + ++ D TRK+LL C+G + IETV IP R T+CV Sbjct: 58 KL-----INYPIGRSTIDYRTVAPDATRKYLL-----CLGDGLIIETVGIPTAKRLTVCV 107 Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 SSQVGC + C FC TG R+L A EI+ QVL + ED + R+ Sbjct: 108 SSQVGCPMACDFCATGKGGYQRHLRAHEIVDQVLTVQ---------EDFQ--------RR 150 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGV 237 +S++V MGMGEPL N + V KS+ I + +G+ +R +T+ST G I ++ + V Sbjct: 151 VSHVVFMGMGEPLLNLEEVVKSVKILNQDIGIG--QRSLTISTVGLPQKIIQLAHHHLQV 208 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 LA+SLHA + LR L+P + Y L+ L+ CR Y ++ RRI+FEYV+L G+ND P Sbjct: 209 TLAVSLHASNQPLRETLIPSAQHYTLKNLLADCREYVNIT-GRRISFEYVLLGGVNDLPE 267 Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 A+ L +LKG + +NLIP+NP +Y +Q I TF + +++ + +R RGL+ Sbjct: 268 QAIELANLLKGFQSHVNLIPYNPIDEADYQRPNQTQIQTFVQVLEQHKIAVSVRYSRGLE 327 Query: 358 ILAACGQLKS 367 AACGQL++ Sbjct: 328 ANAACGQLRA 337 >gi|270296162|ref|ZP_06202362.1| cfr family radical SAM enzyme [Bacteroides sp. D20] gi|317480739|ref|ZP_07939825.1| cfr family radical SAM enzyme [Bacteroides sp. 4_1_36] gi|270273566|gb|EFA19428.1| cfr family radical SAM enzyme [Bacteroides sp. D20] gi|316903080|gb|EFV24948.1| cfr family radical SAM enzyme [Bacteroides sp. 4_1_36] Length = 346 Score = 222 bits (566), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 130/364 (35%), Positives = 196/364 (53%), Gaps = 29/364 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K L+G+ EL+ + +G+P QI W+Y + + MS++S + R L Sbjct: 1 MQKRPLLGLTLAELQNVVKNLGMPG----FSAKQIASWLYDKKVASIDEMSNLSLKHREL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L + + + VD S DGT K+L R G +E VYIP++ R TLCVSSQVG Sbjct: 57 LKEIYEVGAEAPVDAMRSVDGTVKYLYR-----AGEGHFVEAVYIPDEDRATLCVSSQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG Q NLT+ +I+ Q+ P + K++N+V Sbjct: 112 CKMNCKFCMTGKQGFTANLTSNQIINQI-------SSLPERD------------KLTNVV 152 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N D V K+L I + S G ++S +R+TLS+ G + R E LAISL Sbjct: 153 MMGMGEPLDNLDEVLKALEIMTASYGYAWSPKRVTLSSVGLKKGLQRFIGESDCHLAISL 212 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ R L+P + + + +++ R+Y S RR++FEY++ KG+NDS A L+ Sbjct: 213 HSPIPLQRRELMPAEKAFSITEIVELLRNYD-FSKQRRLSFEYIVFKGVNDSLPYAKELL 271 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+L+G+ +INLI F+ PG +D + + F + + G + IR+ RG DI AACG Sbjct: 272 KLLRGLDCRINLIRFHAIPGVNLEGADMETMTAFRDYLTSHGLFTTIRSSRGEDIFAACG 331 Query: 364 QLKS 367 L + Sbjct: 332 MLST 335 >gi|187932932|ref|YP_001885417.1| radical SAM enzyme, Cfr family [Clostridium botulinum B str. Eklund 17B] gi|205829737|sp|B2THS9|RLMN_CLOBB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|187721085|gb|ACD22306.1| radical SAM enzyme, Cfr family [Clostridium botulinum B str. Eklund 17B] Length = 347 Score = 222 bits (566), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 127/336 (37%), Positives = 190/336 (56%), Gaps = 26/336 (7%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD-EKISCDGTRKWLLR 91 R QI WIY + +R+F M ++ + + L ++F I PEI + K DGT K+L + Sbjct: 24 FRAKQIMSWIY-KDVRNFSDMRNMPKSLIAKLEENFEIALPEIEEIYKSELDGTEKFLFK 82 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 F + IE+V + K ++C+S+QVGC + C FC + +RNLT EIL Q+ Sbjct: 83 FSDGNL-----IESVLMRYKHGNSICISTQVGCRMGCKFCASTIDGRIRNLTTGEILAQI 137 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 L+ ++ +G +ISN+V+MG GEPL N++NV K L I S GL+ Sbjct: 138 LVVQN-----------------HIGERISNVVLMGSGEPLDNYENVMKFLDIVSAEYGLN 180 Query: 212 FSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 +R ITLST G VP I + + E+ + LAISLHA S++ R ++PI KY ++ +++AC Sbjct: 181 IGQRHITLSTCGIVPKIYELADKELSITLAISLHAFSDEKRKEIMPIANKYSIDEILNAC 240 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 +++ RRITFEY ++K +NDS DA L K+LKG+ +NLIP N + S Sbjct: 241 KYFVN-KTKRRITFEYSLVKDVNDSKEDARALGKLLKGMLCHVNLIPVNEIKERTFKRSS 299 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 ++ I F+ + G +R G DI AACGQL+ Sbjct: 300 KETIQDFANILSNLGIEVTVRREMGSDINAACGQLR 335 >gi|150005131|ref|YP_001299875.1| ribosomal RNA large subunit methyltransferase N [Bacteroides vulgatus ATCC 8482] gi|254883266|ref|ZP_05255976.1| 23S rRNA methyltransferase [Bacteroides sp. 4_3_47FAA] gi|294778942|ref|ZP_06744358.1| radical SAM enzyme, Cfr family [Bacteroides vulgatus PC510] gi|319642641|ref|ZP_07997287.1| cfr family radical SAM enzyme [Bacteroides sp. 3_1_40A] gi|205829665|sp|A6L3I9|RLMN_BACV8 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|149933555|gb|ABR40253.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482] gi|254836059|gb|EET16368.1| 23S rRNA methyltransferase [Bacteroides sp. 4_3_47FAA] gi|294447251|gb|EFG15835.1| radical SAM enzyme, Cfr family [Bacteroides vulgatus PC510] gi|317385729|gb|EFV66662.1| cfr family radical SAM enzyme [Bacteroides sp. 3_1_40A] Length = 349 Score = 222 bits (566), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 128/369 (34%), Positives = 194/369 (52%), Gaps = 29/369 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G +E+++ + +G+P + QI W+Y + + M+++S + R L Sbjct: 5 KTALLGRTLDEIQQIVRNLGMP----KFAAKQITSWLYDKKVETIDEMTNLSLKHREALK 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + + V+E S DGT K+L R PA IE VYIP++ R TLCVSSQVGC Sbjct: 61 EGYEVGASAPVEEMRSVDGTVKYLFRTPAHNF-----IEAVYIPDEDRATLCVSSQVGCK 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q NL+A +IL Q+ IP K++N+V M Sbjct: 116 MNCKFCMTGKQGFTANLSAHQILNQIY------------------SIPE-REKLTNLVFM 156 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEP N D V K L I + G +S +RIT+S+ G + R E LAIS+H Sbjct: 157 GMGEPFDNLDEVLKVLEILTSEYGYGWSPKRITVSSVGLKKGLERFLNESDCHLAISMHT 216 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 R L+P + + + +ID +Y S RR++FEY++ KG+NDS A ++K+ Sbjct: 217 PIPSQRRDLMPAEKAFSITEIIDILHNY-DFSKQRRLSFEYIVFKGVNDSLIYAKEIVKL 275 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+GI ++NLI F+ P + D + +V F + + + G + IR RG DI AACG L Sbjct: 276 LRGIECRVNLIRFHAIPNVDLEGVDMETMVAFRDYLTQHGVFATIRASRGEDIFAACGML 335 Query: 366 KSLSKRIPK 374 + ++ K Sbjct: 336 STAKQQKEK 344 >gi|306829710|ref|ZP_07462899.1| cfr family radical SAM enzyme [Streptococcus mitis ATCC 6249] gi|304428061|gb|EFM31152.1| cfr family radical SAM enzyme [Streptococcus mitis ATCC 6249] Length = 361 Score = 222 bits (566), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 131/368 (35%), Positives = 213/368 (57%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+ ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+ + LN Sbjct: 2 KPSIYSLTRQAMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKGLIAKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 EQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI+ Q++L + D G ++ ++S+IV Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N++NV + +D G++ R IT+STSG I E + V LA+S Sbjct: 159 VMGIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +NDLR+ ++ INR +P+E L A +Y +N RR+TFEY+ML +ND AL L Sbjct: 219 LHAPNNDLRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++LK I + +NLIP+NP +Y S ++ ++ F + +K+ G + +R G DI Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDSLKKKGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|312111725|ref|YP_003990041.1| radical SAM protein [Geobacillus sp. Y4.1MC1] gi|311216826|gb|ADP75430.1| radical SAM enzyme, Cfr family [Geobacillus sp. Y4.1MC1] Length = 364 Score = 222 bits (566), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 122/340 (35%), Positives = 193/340 (56%), Gaps = 21/340 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R +QI++W+Y + + F M+++ + +R L+ HF I + + ++ S DGT K+L Sbjct: 41 FRATQIYEWLYQKRVTHFSEMTNLPKTLREKLSGHFDITTLKTLVKQTSKDGTMKFLFE- 99 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + IETV + ++CV++QVGC + C+FC + L R+L A EI+ QV+ Sbjct: 100 ----LHDGYSIETVLMRHNYGNSICVTTQVGCRIGCTFCASTLGGLKRHLEAGEIVAQVV 155 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 + L + +IS+IV+MG+GEP N+D + K L I + + GL+ Sbjct: 156 KVQKELDE--------------QNERISSIVVMGIGEPFDNYDELIKFLKIVNHAKGLNI 201 Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 R IT+STSG +P I + +E + V AISLHA + +LR L+PIN+ YPL L+DA R Sbjct: 202 GARHITVSTSGIIPKIYQFADEGMQVNFAISLHAPTTELRTKLMPINKAYPLPKLMDAVR 261 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 +Y RR+TFEY + G+ND A L +++KG+ +NLIP N P Y+ + + Sbjct: 262 YYIE-KTGRRVTFEYGLFGGVNDQLEHAEQLAELIKGLKCHVNLIPVNYVPERNYVRTPR 320 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 + I F +K+ G + IR +G DI AACGQL++ ++ Sbjct: 321 EQIFAFERALKKHGINVTIRREQGHDIDAACGQLRAKERK 360 >gi|295100693|emb|CBK98238.1| 23S rRNA m(2)A-2503 methyltransferase [Faecalibacterium prausnitzii L2-6] Length = 346 Score = 222 bits (566), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 129/354 (36%), Positives = 197/354 (55%), Gaps = 30/354 (8%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 E+L L +G P R QI+ W++ + + DF M+D + + L + F I P Sbjct: 13 EQLTAELKAMGQPG----FRAKQIFHWVHQKLVTDFSAMTDQPKALLARLEEAFYIAAPI 68 Query: 75 IVDEKISCDGTRKWLLRFP-ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133 I + + DGT K+LLR CI ETV + T+CVS+QVGC + C FC + Sbjct: 69 IERRQEAKDGTVKYLLRMADGNCI------ETVVMRYHYGNTVCVSTQVGCRMGCRFCAS 122 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 VRNL A EI ++ A+ +G +IS+IV+MG+GEPL N Sbjct: 123 TQAGRVRNLEAGEICSEIYTAQK-----------------DIGERISHIVLMGIGEPLDN 165 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252 FD V + L S G++ R I+LST G VP I R+ E+ + + L++SLHA +ND+R+ Sbjct: 166 FDEVMRFLENISSPEGVNIGMRNISLSTCGLVPKIDRLAEKKLQLTLSVSLHAPNNDIRS 225 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312 ++P+N YP+E+L+ A R Y + RR++FEY M++G+NDS A L +++G+ A Sbjct: 226 GMMPVNDAYPVEVLMQAVRRYQE-TTGRRVSFEYSMVRGVNDSDACARQLADLIRGMGAH 284 Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +NLIP NP G Y +D ++ F + ++ G ++ +R G +I AACGQL+ Sbjct: 285 VNLIPINPVDGSPYSATDAANVRRFQQKLESLGVNATVRRRLGSEISAACGQLR 338 >gi|307708474|ref|ZP_07644939.1| radical SAM enzyme, Cfr family [Streptococcus mitis NCTC 12261] gi|307615390|gb|EFN94598.1| radical SAM enzyme, Cfr family [Streptococcus mitis NCTC 12261] Length = 361 Score = 222 bits (566), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 130/368 (35%), Positives = 214/368 (58%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+ ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 EQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI+ Q++L + D G ++ ++S+IV Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N++NV + +D G++ R IT+STSG I E + V LA+S Sbjct: 159 VMGIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ INR +P+E L A +Y +N RR+TFEY+ML +ND AL L Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++LK I + +NLIP+NP +Y S ++ ++ F + +K+ G + +R G DI Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|227539135|ref|ZP_03969184.1| Fe-S-cluster redox protein [Sphingobacterium spiritivorum ATCC 33300] gi|300770634|ref|ZP_07080513.1| cfr family radical SAM enzyme [Sphingobacterium spiritivorum ATCC 33861] gi|227240817|gb|EEI90832.1| Fe-S-cluster redox protein [Sphingobacterium spiritivorum ATCC 33300] gi|300763110|gb|EFK59927.1| cfr family radical SAM enzyme [Sphingobacterium spiritivorum ATCC 33861] Length = 352 Score = 222 bits (566), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 129/355 (36%), Positives = 196/355 (55%), Gaps = 30/355 (8%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 ++L++ L+++G R QI++W++ + DF MS++S+ +R L +F+I Sbjct: 16 DQLKQKLVEMG----EQGFRAKQIYEWLWQKSCTDFDEMSNLSKALRDTLKANFAINAVT 71 Query: 75 IVDEKISCDGTRK---WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131 + + ++S D T K WL IE V IP R T CVSSQVGCSLTC FC Sbjct: 72 VKESQVSSDRTIKSSFWLYDNNV--------IEGVLIPTTDRMTACVSSQVGCSLTCKFC 123 Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191 TG RNL A+EI QV+L I G+ ++NIV MGMGEPL Sbjct: 124 ATGYMDRKRNLNADEIYDQVVL-------------ISKQAEEKYGQPLTNIVYMGMGEPL 170 Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDL 250 N+ N+ KS+ + GL+ + +RIT+ST+G I ++G++ + LA+SLHA ++ Sbjct: 171 LNYANMMKSVERITSPDGLNMAAKRITVSTAGIAKMIKKLGDDGVKFNLALSLHAANDQK 230 Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310 RN ++PIN + L+ L +A +++ L ITFEY++ ND DA L + K +P Sbjct: 231 RNEIMPINEQNTLKALAEALKYFY-LKTKSPITFEYIVFNNFNDELEDAKELARFCKHVP 289 Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +K+NLI +NP ++ +D I F+E ++ G + +R RG DI AACGQL Sbjct: 290 SKVNLIEYNPISLADFTNADADKIDVFAEYLRSQGIITNVRRSRGKDIDAACGQL 344 >gi|157151429|ref|YP_001449957.1| ribosomal RNA large subunit methyltransferase N [Streptococcus gordonii str. Challis substr. CH1] gi|205829902|sp|A8AVZ7|RLMN_STRGC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|157076223|gb|ABV10906.1| radical SAM enzyme, Cfr family [Streptococcus gordonii str. Challis substr. CH1] Length = 362 Score = 222 bits (566), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 132/368 (35%), Positives = 212/368 (57%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+E+ ++ Q + R +QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQEM----IEWAEAQGEKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI+ Q++L + D G ++ ++S+IV Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVSQIMLVQKYF-DERGQDE-----------RVSHIV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+S Sbjct: 159 VMGIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +NDLR ++ INR +P+E L A +Y +N RR+TFEY+ML +ND A L Sbjct: 219 LHAPNNDLRTSIMRINRSFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQAKEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++LK I + +NLIP+NP +Y S ++ ++ F + +K++G + +R G DI Sbjct: 278 AELLKNIRKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|295399765|ref|ZP_06809746.1| radical SAM enzyme, Cfr family [Geobacillus thermoglucosidasius C56-YS93] gi|294978168|gb|EFG53765.1| radical SAM enzyme, Cfr family [Geobacillus thermoglucosidasius C56-YS93] Length = 364 Score = 222 bits (566), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 122/340 (35%), Positives = 193/340 (56%), Gaps = 21/340 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R +QI++W+Y + + F M+++ + +R L+ HF I + + ++ S DGT K+L Sbjct: 41 FRATQIYEWLYQKRVTHFSEMTNLPKALREKLSGHFDITTLKTLVKQTSKDGTMKFLFE- 99 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + IETV + ++CV++QVGC + C+FC + L R+L A EI+ QV+ Sbjct: 100 ----LHDGYSIETVLMRHNYGNSICVTTQVGCRIGCTFCASTLGGLKRHLEAGEIVAQVV 155 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 + L + +IS+IV+MG+GEP N+D + K L I + + GL+ Sbjct: 156 KVQKELDE--------------QNERISSIVVMGIGEPFDNYDELIKFLKIVNHAKGLNI 201 Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 R IT+STSG +P I + +E + V AISLHA + +LR L+PIN+ YPL L+DA R Sbjct: 202 GARHITVSTSGIIPKIYQFADEGMQVNFAISLHAPTTELRTKLMPINKAYPLPKLMDAVR 261 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 +Y RR+TFEY + G+ND A L +++KG+ +NLIP N P Y+ + + Sbjct: 262 YYIE-KTGRRVTFEYGLFGGVNDQLEHAEQLAELIKGLKCHVNLIPVNYVPERNYVRTPR 320 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 + I F +K+ G + IR +G DI AACGQL++ ++ Sbjct: 321 EQIFAFERALKKHGINVTIRREQGHDIDAACGQLRAKERK 360 >gi|307704572|ref|ZP_07641477.1| UPF0063 protein yfgB [Streptococcus mitis SK597] gi|307621869|gb|EFO00901.1| UPF0063 protein yfgB [Streptococcus mitis SK597] Length = 361 Score = 222 bits (566), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 131/368 (35%), Positives = 214/368 (58%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+ ++E +L+ G + H QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQTMQEWVLEQGEKKFH----ADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI+ Q++L + D G ++ ++S+IV Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N++NV + +D G++ R IT+STSG I E + V LA+S Sbjct: 159 VMGIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ INR +P+E L A +Y +N RR+TFEY+ML +ND AL L Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++LK I + +NLIP+NP +Y S ++ ++TF + +K+ G + +R G DI Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLTFYDTLKKKGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|332366108|gb|EGJ43864.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1059] Length = 357 Score = 222 bits (566), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 130/368 (35%), Positives = 209/368 (56%), Gaps = 35/368 (9%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+E+ ++ Q + R +QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQEM----IEWAEAQGEKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLITKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI+ Q++L + + ++S+IV Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE-----------------RVSHIV 153 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+S Sbjct: 154 VMGIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 213 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +NDLR ++ INR +P+E L A +Y +N RR+TFEY+ML +ND A L Sbjct: 214 LHAPNNDLRTSIMRINRSFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQAKEL 272 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++LK I + +NLIP+NP +Y S ++ ++ F + +K++G + +R G DI Sbjct: 273 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDID 332 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 333 AACGQLRS 340 >gi|261409887|ref|YP_003246128.1| radical SAM enzyme, Cfr family [Paenibacillus sp. Y412MC10] gi|261286350|gb|ACX68321.1| radical SAM enzyme, Cfr family [Paenibacillus sp. Y412MC10] Length = 353 Score = 222 bits (566), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 134/376 (35%), Positives = 218/376 (57%), Gaps = 28/376 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K S+ G+ ++L L + G H + R +Q+W+W+Y + + F M+D+ E L Sbjct: 1 MNKPSIYGLTLDQLTAWLGERG----HKKFRATQVWEWLYRKRVTSFSDMTDVHPECLQL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +H++I+ E ++ S DGT K+L + + G + IETV + K ++CV++QVG Sbjct: 57 LEEHYTILTLEEHTKQESLDGTVKFLFKL----VDGNL-IETVLMRHKFGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ CSFC +G K R+L+A EI+ QV+ + L D G + ++S++V Sbjct: 112 CNIGCSFCASGLLKKSRDLSAAEIVEQVMQVQLHL-DRRGSSE-----------RVSHLV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242 +MG+GEP N++N+ + + D GL+ R IT+STSG I + ++GV LAIS Sbjct: 160 VMGIGEPFDNYENMSDFIRVIKDHKGLAIGPRHITVSTSGLANKIVEFADSDLGVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA ++++R ++ IN+ P+E L+ A +Y +N RRIT EY++LK +ND AL L Sbjct: 220 LHAPNDEIRTRIMKINKAIPIEKLMAAIDYYLEKTN-RRITLEYILLKDVNDQREHALEL 278 Query: 303 IKIL--KGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 +++ + A +NLIP+NP +Y S ++ I F + +K+ G S +R G DI Sbjct: 279 AELVGERRNLANVNLIPYNPVDEHSQYQRSTKESITAFYDTLKKQGISCSVRLEHGTDID 338 Query: 360 AACGQLKSLSKRIPKV 375 AACGQL+ SK+I K Sbjct: 339 AACGQLR--SKQIKKA 352 >gi|308071465|ref|YP_003873070.1| hypothetical protein PPE_04773 [Paenibacillus polymyxa E681] gi|305860744|gb|ADM72532.1| Conserved hypothetical protein [Paenibacillus polymyxa E681] Length = 365 Score = 222 bits (566), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 133/368 (36%), Positives = 210/368 (57%), Gaps = 26/368 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +KKES+ G+ ++L L++ G H + R Q+W +Y + + DF M++I ++ L Sbjct: 1 MKKESIYGLTLDQLTAWLIEHG----HKKSRALQVWDALYRKRVTDFATMAEIHEDCTRL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +HFSI E ++ S DGT K+L R + IETV + K ++CV++QVG Sbjct: 57 LAEHFSIETLEEHVKQQSADGTVKFLFRLQDGNL-----IETVLMRHKFGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ CSFC +G K R+L++ EI+ Q++ + L G ++S++V Sbjct: 112 CNIGCSFCASGLLKKSRDLSSGEIVEQIMKVQLYLDQ------------ERPGDQVSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242 +MG+GEP NF N+ + + D GL+ R IT+STSG I + ++ V LAIS Sbjct: 160 VMGIGEPFDNFVNLSDFIRVIKDHKGLAIGPRHITVSTSGLADKIIEFADSDLHVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N++R ++ INR P+E L+ A +Y +N RRIT EY++LK +ND AL L Sbjct: 220 LHAPNNEIRTRIMKINRAIPIEKLMQAIDYYLDKTN-RRITLEYILLKDVNDGKEHALEL 278 Query: 303 IKIL--KGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 +++ + A +NLIP+NP +Y S+ + I F + +K+ G S +R G+DI Sbjct: 279 AELVGHRRNLANVNLIPYNPVDEHSQYQRSESESITGFYDVLKKQGISCSVRLEHGVDID 338 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 339 AACGQLRS 346 >gi|258647948|ref|ZP_05735417.1| radical SAM enzyme, Cfr family [Prevotella tannerae ATCC 51259] gi|260851788|gb|EEX71657.1| radical SAM enzyme, Cfr family [Prevotella tannerae ATCC 51259] Length = 360 Score = 222 bits (566), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 132/375 (35%), Positives = 204/375 (54%), Gaps = 37/375 (9%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 ++ +K++L+G+ EL++ + +P QI +W+YV +R+ M+++S R Sbjct: 3 DYQQKKNLLGLTPSELKDVARSLQLPA----FVGKQIARWLYVHHVREIDEMTNLSLAAR 58 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 LL Q + I +D + S DGT K+L R + G IETV+IP+ RGTLCVSSQ Sbjct: 59 ELLKQQYVIGNSSPIDAQYSKDGTIKYLYR----TLSGDY-IETVFIPDGDRGTLCVSSQ 113 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC + C+FC TG Q V +L+A +IL Q+ P E +++N Sbjct: 114 VGCKMHCAFCMTGRQGYVASLSAADILNQIY-------SLPERE------------RLTN 154 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 IV MG GEP N DNV ++ I + G ++S +RIT+ST G + + R +E LAI Sbjct: 155 IVFMGQGEPFDNLDNVLRATEILTSPEGYAWSPKRITVSTIGLLQGLKRFLDESKCSLAI 214 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHY--------PGL-SNARRITFEYVMLKGI 292 SLH R ++P+ R YP++ ++ + Y G+ S RR++FEY++ G+ Sbjct: 215 SLHHAVPAEREKIMPVERAYPIKDVVRLLKQYDFCRPRTNEGVGSKQRRLSFEYIVFSGV 274 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 NDS +DA +I++LKG+ +INLI F+ P D + ++ F + + G + IR Sbjct: 275 NDSLKDAAAIIELLKGLDCRINLIRFHQIPDTPLKGVDDQKMLRFRDYLTAHGIFTTIRA 334 Query: 353 PRGLDILAACGQLKS 367 RG DI AACG L + Sbjct: 335 SRGQDIFAACGLLST 349 >gi|167753918|ref|ZP_02426045.1| hypothetical protein ALIPUT_02203 [Alistipes putredinis DSM 17216] gi|167658543|gb|EDS02673.1| hypothetical protein ALIPUT_02203 [Alistipes putredinis DSM 17216] Length = 344 Score = 222 bits (566), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 129/365 (35%), Positives = 193/365 (52%), Gaps = 33/365 (9%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 + E L G +LE ++ +P R QI +W+Y + + MSD+S R LL Sbjct: 3 RHEYLYGQTLPQLEALCNRLEMP----RFAAKQIARWLYDKHATTIEAMSDLSARHRALL 58 Query: 65 NQHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + + + PE V IS DGT+K+L R IE+ YIP+ R TLC+SSQ Sbjct: 59 AETYEVGLTAPEKV--SISTDGTKKYLYRTSQNHF-----IESAYIPDGDRATLCISSQA 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG Q L +L+ EIL Q+ P E +++N+ Sbjct: 112 GCRMGCRFCATGRQGLQHSLSTNEILNQI-------ESLPERE------------RLTNV 152 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 V MGMGEPL N D++ +L + + + G +S RIT+ST+G + R E V LA+S Sbjct: 153 VFMGMGEPLDNLDSLLPALEVLTSAWGFGWSPTRITVSTAGVASRLERFLEATQVHLAVS 212 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LH R ++PI + +P+ +++ R Y ++ RR++FEY+++ G+NDSPR L Sbjct: 213 LHNPFPHERAEIMPIEKAWPIREVVEILRRY-DFTHQRRVSFEYIVMSGLNDSPRHIREL 271 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++L GI +INLI F+ PG Y D + ++ F + + G + IRT RG DI AAC Sbjct: 272 CRLLDGIKCRINLIRFHKIPGSPYFSPDDRAMIAFRDALTAKGIHTTIRTSRGEDIQAAC 331 Query: 363 GQLKS 367 G L + Sbjct: 332 GLLST 336 >gi|325688196|gb|EGD30215.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK72] Length = 362 Score = 222 bits (566), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 130/368 (35%), Positives = 210/368 (57%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+++ ++ Q + R +QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQDM----IEWAEAQGEKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI+ Q++L + + E ++S+IV Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDERGQNE------------RVSHIV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+S Sbjct: 159 VMGIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +NDLR ++ INR +P+E L A +Y +N RR+TFEY+ML +ND A L Sbjct: 219 LHAPNNDLRTSIMRINRSFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQAKEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++LK I + +NLIP+NP +Y S ++ ++ F + +K++G + +R G DI Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|322392191|ref|ZP_08065652.1| cfr family radical SAM enzyme [Streptococcus peroris ATCC 700780] gi|321144726|gb|EFX40126.1| cfr family radical SAM enzyme [Streptococcus peroris ATCC 700780] Length = 361 Score = 222 bits (565), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 131/368 (35%), Positives = 214/368 (58%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+ ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQGMQEWILEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI+ Q++L + D G ++ ++S+IV Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAIS 242 +MG+GEP N++NV + +D G++ R IT+STSG I A E + V LA+S Sbjct: 159 VMGIGEPFDNYNNVLNFIRTINDDKGMAIGARHITVSTSGLAHKIRAFANEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ INR +P+E L A +Y +N RR+TFEY+ML +ND AL L Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277 Query: 303 IKILKGIP--AKINLIPFNP-WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++LK I + +NLIP+NP +Y S ++ ++ F + +K+ G + +R G DI Sbjct: 278 AELLKNIKKLSYVNLIPYNPVTEHDQYSRSPKERVMAFYDTLKKHGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|237750344|ref|ZP_04580824.1| ribosomal RNA large subunit methyltransferase N [Helicobacter bilis ATCC 43879] gi|229373874|gb|EEO24265.1| ribosomal RNA large subunit methyltransferase N [Helicobacter bilis ATCC 43879] Length = 366 Score = 222 bits (565), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 132/350 (37%), Positives = 199/350 (56%), Gaps = 34/350 (9%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI--IYPEIVDEKISCDGTRKWL 89 + R QI+ W+Y + + + M +I + ++ +L Q FS + P ++E S DGT+K+L Sbjct: 32 KFRAKQIYNWLYKHYVSNIESMKNIPKNLQEILKQTFSFPNLKPIRIEE--SGDGTKKYL 89 Query: 90 LRFPARCIGGPVEI--------ETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141 + V I E + + + T CVSSQVGC + C+FC T VRN Sbjct: 90 FQTSDGATFESVFIKMREKEYDENNRVKKSEKYTFCVSSQVGCRVGCAFCSTAKGGFVRN 149 Query: 142 LTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKS 200 L+A EI+ QV+ L R + + I NIV MGMGEPL N +NV K+ Sbjct: 150 LSAGEIVEQVVALKRD--NNLSAHKSI-------------NIVFMGMGEPLDNLNNVAKA 194 Query: 201 LSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINR 259 + I S GL + RR T+STSG P I ++G +GV +A+SLHAV + LR+ L+P+N+ Sbjct: 195 IKILSHEEGLCIATRRQTISTSGIAPQIEKLGAMNLGVQIALSLHAVDDSLRSRLIPMNK 254 Query: 260 KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFN 319 Y +E ++ A +++P L +RI FEY+++K IND A L+K+L G AK+NLIPFN Sbjct: 255 VYNIERVLQALKNFP-LDTRKRILFEYLVIKDINDDLASAKKLVKLLHGFRAKVNLIPFN 313 Query: 320 PWPGCEYL--CSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 P E+ C D+ + F++ + + G + IR +G+DI AACGQL++ Sbjct: 314 PHAESEFQRPCIDK--MQGFADYLYKRGIVATIRESKGIDISAACGQLRA 361 >gi|163784065|ref|ZP_02179018.1| hypothetical protein HG1285_12252 [Hydrogenivirga sp. 128-5-R1-1] gi|159880664|gb|EDP74215.1| hypothetical protein HG1285_12252 [Hydrogenivirga sp. 128-5-R1-1] Length = 355 Score = 222 bits (565), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 125/341 (36%), Positives = 194/341 (56%), Gaps = 27/341 (7%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD-EKISCDGTRKWLL 90 + R QI KW+Y + + + M+D+S+++R+ L ++ ++V EK DG+ K+L Sbjct: 25 KFRAKQISKWLYNKKVSSYDEMTDLSKDIRNYLKENTEFESLKLVSYEKSQIDGSIKFLW 84 Query: 91 RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150 R G IE+V+IPE+ T+CVS+QVGC++ C+FCYT L+RNLT EI+ Q Sbjct: 85 RLKD---GNT--IESVFIPERDHNTICVSTQVGCAVGCTFCYTTKDGLIRNLTTAEIIDQ 139 Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210 L + +G+ +ISN+V MGMGEPL N+DNV+K++ I +D L Sbjct: 140 YLQVQRFVGN---------------ENRISNVVFMGMGEPLANYDNVRKAVQIMTDKNML 184 Query: 211 SFSKRRITLSTSGFVPNIARVG---EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267 S R+IT+S+SG + I ++ E V LA+SL+A +R ++PI++ +E L+ Sbjct: 185 DLSNRKITISSSGIIAQILKMYNDPEFPQVRLAVSLNASDQKVRESIMPISKTNTIEDLM 244 Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPWPGCE 325 P RI EYV++K +ND+ DA L+K++ K+NLIPFNP+ + Sbjct: 245 KTLNSLP-FKTGYRIMLEYVLIKDVNDTEEDAKKLVKLIGKNKKRYKVNLIPFNPFEESD 303 Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 Y D+K + F + + S+ IR +G DI AACGQL+ Sbjct: 304 YKRPDEKRVEKFQKILWEHNISAFIRWSKGRDISAACGQLR 344 >gi|261880280|ref|ZP_06006707.1| cfr family radical SAM enzyme [Prevotella bergensis DSM 17361] gi|270332967|gb|EFA43753.1| cfr family radical SAM enzyme [Prevotella bergensis DSM 17361] Length = 359 Score = 222 bits (565), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 134/378 (35%), Positives = 200/378 (52%), Gaps = 37/378 (9%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K+ L+GM EL+ +G+P QI W+YV+ +R M++IS+ R Sbjct: 1 MNKKILLGMTPTELKAVAKSLGMPA----FTGDQIANWMYVQHVRSIDEMTNISKTNRAC 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIG-----------GPVEIETVYIPEKS 112 L + + I + +D + S DGT K+L FP R P +ETVYIP+ Sbjct: 57 LAEQYEIGCVDPIDAQHSEDGTIKYL--FPVRTTSYKEGEAGNEKTSPKFVETVYIPDGE 114 Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172 R TLCVS +VGC + C FC TG Q L+A +IL Q+ P E Sbjct: 115 RATLCVSCEVGCKMNCLFCQTGKQGFQGYLSAADILNQIY-------SLPERE------- 160 Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232 ++NIV MG GEP+ N DNV ++ I + ++S +RIT+ST G + R Sbjct: 161 -----SLTNIVFMGQGEPMDNLDNVLRTTEILTAPYAFAWSPKRITVSTIGIKNELKRFI 215 Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 EE LA+SLH+ ++ R L+PI R P+E ++D R+Y S+ RR++FEY++ +GI Sbjct: 216 EESDCHLAVSLHSPFHEQRAELMPIERTTPVEEIVDLLRNY-DFSHQRRLSFEYIVFEGI 274 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 NDS A ++++L+G+ ++NLI F+P P +D K + +F + G + IR Sbjct: 275 NDSKEHARAIVRLLEGLFCRVNLIRFHPIPHVNLHGADDKQMESFRNYLTTHGIHTTIRA 334 Query: 353 PRGLDILAACGQLKSLSK 370 RG DILAACG L + K Sbjct: 335 SRGQDILAACGLLNTSRK 352 >gi|270292529|ref|ZP_06198740.1| radical SAM enzyme, Cfr family [Streptococcus sp. M143] gi|270278508|gb|EFA24354.1| radical SAM enzyme, Cfr family [Streptococcus sp. M143] Length = 361 Score = 222 bits (565), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 130/368 (35%), Positives = 214/368 (58%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+ ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 EQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI+ Q++L + D G ++ ++S+IV Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N++NV + +D G++ R IT+STSG I E + V LA+S Sbjct: 159 VMGIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ INR +P+E L A +Y +N RR+TFEY+ML +ND AL L Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGIEQALEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++LK I + +NLIP+NP +Y S ++ ++ F + +K+ G + +R G DI Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKKGINCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|228474965|ref|ZP_04059693.1| radical SAM enzyme, Cfr family [Staphylococcus hominis SK119] gi|314936620|ref|ZP_07843967.1| radical SAM enzyme, Cfr family [Staphylococcus hominis subsp. hominis C80] gi|228270950|gb|EEK12338.1| radical SAM enzyme, Cfr family [Staphylococcus hominis SK119] gi|313655239|gb|EFS18984.1| radical SAM enzyme, Cfr family [Staphylococcus hominis subsp. hominis C80] Length = 364 Score = 222 bits (565), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 125/371 (33%), Positives = 207/371 (55%), Gaps = 25/371 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +K+S+ + +E++ L++ G + R QI++W+Y + + M+++S+++R L Sbjct: 16 FEKQSIYSLRYDEMQNWLVEHG----QQKFRAKQIFEWLYQKRVDTIDEMTNLSKDLRQL 71 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +F + V ++ S DGT K+L + IETV + ++CV++QVG Sbjct: 72 LKDNFVMTTLTTVVKQESKDGTIKFLFE-----LQDGYTIETVLMRHDYGNSVCVTTQVG 126 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C+FC + L RNL A EI+ QVL + L + ++S IV Sbjct: 127 CRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKAL--------------DATNERVSQIV 172 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242 +MG+GEP N+D + L I +D L+ R IT+STSG +P I E+I + A+S Sbjct: 173 IMGIGEPFENYDEMMDFLKIVNDDNSLNIGARHITVSTSGIIPRIYDFADEQIQINFAVS 232 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +++R+ L+PINR Y + L++A ++Y +N RRITFEY + G+ND A +L Sbjct: 233 LHAAKDEIRSKLMPINRAYNVGKLMEAIKYYQEKTN-RRITFEYGLFGGVNDQLEHARDL 291 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++K + +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AAC Sbjct: 292 AHLIKDLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAAC 351 Query: 363 GQLKSLSKRIP 373 GQL++ +++ Sbjct: 352 GQLRAKERQVE 362 >gi|308069673|ref|YP_003871278.1| hypothetical protein PPE_02915 [Paenibacillus polymyxa E681] gi|305858952|gb|ADM70740.1| Conserved hypothetical protein [Paenibacillus polymyxa E681] Length = 346 Score = 222 bits (565), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 126/354 (35%), Positives = 194/354 (54%), Gaps = 25/354 (7%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 EEL++ G P R QI+ W+YV+ + DF M+++S+ +R L + FS + Sbjct: 11 EELQDWAKNNGEPA----FRGGQIFDWLYVKRVNDFSEMTNLSKALREKLEEQFSFVTLS 66 Query: 75 IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134 + + S DGT K+L + IETV + ++CV++QVGC + C+FC + Sbjct: 67 EITKLESKDGTVKFLF-----GLHDDHAIETVIMRHNYGNSICVTTQVGCRIGCTFCAST 121 Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194 L RNLTA EI QV+ A+ +L ++S+IV+MG GEP N+ Sbjct: 122 LGGLKRNLTAGEITAQVVQAQKIL--------------DKTNERVSSIVIMGSGEPFENY 167 Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNI 253 + L GL+ +R IT+STSG VPNI + +E + LAIS+HA ++ LR+ Sbjct: 168 EATMTFLRTMVHEKGLNIGQRHITVSTSGIVPNIYKFADEDTQINLAISIHAPNDALRSK 227 Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313 L+P+NR+YP + ++D+ R+Y RRI+FEY ++ G+ND A L +LK + + Sbjct: 228 LMPVNRRYPFKDVMDSLRYYLA-KTGRRISFEYALIGGVNDQAEHAEELADVLKDMLCHV 286 Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 NLIP N P +Y+ + + DI F + G + IR +G DI AACGQL++ Sbjct: 287 NLIPVNHVPERKYVRTSRSDIFNFQRILAEKGVNVTIRREQGHDIAAACGQLRA 340 >gi|34541648|ref|NP_906127.1| ribosomal RNA large subunit methyltransferase N [Porphyromonas gingivalis W83] gi|81416860|sp|Q7MTB0|RLMN_PORGI RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|34397966|gb|AAQ67026.1| conserved hypothetical protein TIGR00048 [Porphyromonas gingivalis W83] Length = 341 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 138/359 (38%), Positives = 194/359 (54%), Gaps = 30/359 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+GM EEL L++G+P R Q+ +WIYVR DF M++ISQ R L + + Sbjct: 2 LLGMSLEELTTVALRMGMP----RFAGKQLAEWIYVRRATDFAEMTNISQANRQKLAEIY 57 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 + D + S DGT+K+L FP +G +E+V IPE R TLC+SSQVGC + C Sbjct: 58 DLGRYPWSDVQCSVDGTKKYL--FP---VGEGRFVESVLIPEGDRATLCISSQVGCKMDC 112 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG Q NL+A EIL Q+ F E E ++N+V MGMG Sbjct: 113 LFCMTGKQGWNGNLSAAEILNQI---------FSVDEAAE----------LTNLVYMGMG 153 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN 248 EPL N D V +S+ ++ G+ +S +RIT+ST G + R E LA+SLH+ Sbjct: 154 EPLDNTDEVLRSIEALTEPWGMGWSPKRITVSTIG-AKGLERFLAESRCHLAVSLHSPFP 212 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 + R L+P + +P+ +D R Y S RR++FEY++ G+ND R A L IL+G Sbjct: 213 EERRKLMPGEKAFPIMQTLDRIRAYD-FSGQRRVSFEYIVFDGLNDDMRHADELAAILRG 271 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 IP +INLI F+ P SD + F + ++ G++ IR RG DI AACG L + Sbjct: 272 IPCRINLIRFHKIPAVSLRSSDTARMEAFRKRMESHGFTCTIRASRGEDIFAACGMLST 330 >gi|260584540|ref|ZP_05852286.1| radical SAM enzyme, Cfr family [Granulicatella elegans ATCC 700633] gi|260157563|gb|EEW92633.1| radical SAM enzyme, Cfr family [Granulicatella elegans ATCC 700633] Length = 375 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 130/343 (37%), Positives = 205/343 (59%), Gaps = 28/343 (8%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKI---SCDGTRKW 88 + R Q+W W+Y + + F+ M+++S+++ LN+ F+ +P +++EKI S DGTRK+ Sbjct: 37 KFRAGQLWDWLYRKRVTSFEEMTNLSKDLIAKLNETFT--FP-VLNEKIKQQSTDGTRKF 93 Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 L + IETV +P++ ++CV++QVGC++ C+FC +G R+L A EI+ Sbjct: 94 LFELADGLL-----IETVLMPQEYGLSICVTTQVGCNIGCTFCASGIIAKQRDLVAGEIV 148 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 QV+ + L + V P G ++S+IV+MG+GEP N+DNV K L + + Sbjct: 149 AQVMHVQRTLDE----------VAP--GDRVSHIVVMGIGEPFDNYDNVIKFLKVVNSDT 196 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267 GL+ R IT+STSG P I +E + V LA+SLHA ND R+ ++ INRKYP+E+++ Sbjct: 197 GLAIGARHITVSTSGLAPKILDFAKEGLQVNLALSLHAPDNDTRSKIMRINRKYPIEVVM 256 Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNP-WPGC 324 +A Y +N RR+TFEY+ML +NDS A L +L K + +NLIP+N Sbjct: 257 EAINEYIRTTN-RRVTFEYIMLDHVNDSVEQAQQLADLLADKKRLSYVNLIPYNKVREHD 315 Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 +Y S + +V F + +K++ + +R G DI AACGQL+S Sbjct: 316 QYERSSKDRVVAFYDVLKKNHINCVVRKEFGHDIEAACGQLRS 358 >gi|309800021|ref|ZP_07694219.1| radical SAM enzyme, Cfr family [Streptococcus infantis SK1302] gi|308116341|gb|EFO53819.1| radical SAM enzyme, Cfr family [Streptococcus infantis SK1302] Length = 357 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 130/368 (35%), Positives = 213/368 (57%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+ ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQGMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLISKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI+ Q++L + D G ++ ++S+IV Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N++NV + +D G++ R IT+STSG I E + V LA+S Sbjct: 159 VMGIGEPFDNYNNVLNFIRTINDDKGMAIGARHITVSTSGLAHKIREFANEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ INR +P+E L A +Y +N RR+TFEY+ML +ND AL L Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++LK I + +NLIP+NP +Y S ++ ++ F + +K+ G + +R G DI Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKKGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|221632343|ref|YP_002521564.1| radical SAM enzyme, Cfr family [Thermomicrobium roseum DSM 5159] gi|221156232|gb|ACM05359.1| radical SAM enzyme, Cfr family [Thermomicrobium roseum DSM 5159] Length = 379 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 140/367 (38%), Positives = 209/367 (56%), Gaps = 27/367 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +++E+L ELE + G+P R R Q++ W Y + + +++ MS + + VR Sbjct: 24 VQRETLHDYTLGELEAWVEGRGLP----RYRARQLFHWAYQQLVLEYESMSVLPKAVRSE 79 Query: 64 LNQHFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L++ I V +++S D T K L R +ETV + R T+CVS Q+ Sbjct: 80 LSETLPISGLVPVRQRVSDDRETIKLLFRTRDDHF-----VETVVMFYPDRTTVCVSCQI 134 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC++ CSFC TG L+RNL+A E++ QV+ A L R+ISNI Sbjct: 135 GCAIGCSFCATGLSGLIRNLSAGEMVSQVVHAARLAR--------------ERERRISNI 180 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 V+MGMGEP N+D V + ++I +D GL R ITLST+G VP I R+ EE V LA+ Sbjct: 181 VVMGMGEPFHNYDAVMRFVAIVNDRQGLGIGARHITLSTAGVVPFIDRLAEEPYQVKLAV 240 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++ LR+ LVPINR++P++ L+ ACR Y RR+TFEYV+++ +ND R A Sbjct: 241 SLHAPNDALRSQLVPINRRWPIDELLAACRRYVA-RTGRRVTFEYVLIEDVNDDERTAAE 299 Query: 302 LIKILKGIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L + L+G+ +NLIP+NP P + + I F ++R G + +R RG++I A Sbjct: 300 LARRLRGLLCHVNLIPYNPTPAAPLFRRPGPERIERFRAVLERYGIPATVRYSRGVEIAA 359 Query: 361 ACGQLKS 367 ACGQL++ Sbjct: 360 ACGQLRA 366 >gi|225018694|ref|ZP_03707886.1| hypothetical protein CLOSTMETH_02644 [Clostridium methylpentosum DSM 5476] gi|224948422|gb|EEG29631.1| hypothetical protein CLOSTMETH_02644 [Clostridium methylpentosum DSM 5476] Length = 348 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 132/367 (35%), Positives = 204/367 (55%), Gaps = 29/367 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + ++ + EEL E L +G P + R Q++ W++ + + DF M+++S + R L Sbjct: 2 QTDILSLTYEELAEKLGALGQP----KYRAKQVFAWLHSKQVLDFAQMTNLSIQFREQLG 57 Query: 66 QHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 ++F I +I + +S D T K+L G +ETV + ++CVS+QVGC Sbjct: 58 KNFYINEIKIRKKLVSQLDDTVKYLYELR----DGEF-VETVVMRYHHGNSICVSTQVGC 112 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + CSFC + VR+LT EIL Q+ A LG+ KISN+V+ Sbjct: 113 RMGCSFCASTKAGFVRHLTPSEILGQIYTAERDLGE-----------------KISNVVL 155 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEPL NF+NV L + S G + R +TLST G V I R+ E+ + + L+ISL Sbjct: 156 MGIGEPLDNFNNVLTFLELLSHPEGRNLGMRHVTLSTCGLVDQIYRLAEKNLQITLSISL 215 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA ++ LR+ +P+NR+YP++ L+ ACR Y + RRI+FEY ++ G NDSP A L Sbjct: 216 HAPNDGLRSQTMPVNRRYPIDELLAACRAYADRT-GRRISFEYALIDGFNDSPAHAKELA 274 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++G+ +NLIP N +Y S Q+ + F++ ++ SG ++ +R G DI AACG Sbjct: 275 SRIRGMLCHVNLIPVNRIEERDYASSSQQSVKRFAQVLESSGINATVRRTLGQDINAACG 334 Query: 364 QLKSLSK 370 QL+ K Sbjct: 335 QLRRDEK 341 >gi|322388131|ref|ZP_08061736.1| cfr family radical SAM enzyme [Streptococcus infantis ATCC 700779] gi|321141038|gb|EFX36538.1| cfr family radical SAM enzyme [Streptococcus infantis ATCC 700779] Length = 361 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 130/368 (35%), Positives = 213/368 (57%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRHGMQEWILEQG----EKKFRADQIWEWLYRKRVQTFEEMTNLSKDLIAKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 EQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI+ Q++L + D G ++ ++S+IV Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N++NV + +D G++ R IT+STSG I E + V LA+S Sbjct: 159 VMGIGEPFDNYNNVLNFIRTINDDKGMAIGARHITVSTSGLAHKIREFANEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ INR +P+E L A +Y +N RR+TFEY+ML +ND AL L Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++LK I + +NLIP+NP +Y S ++ ++ F + +K+ G + +R G DI Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKKGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|296876970|ref|ZP_06901014.1| cfr family radical SAM enzyme [Streptococcus parasanguinis ATCC 15912] gi|296432005|gb|EFH17808.1| cfr family radical SAM enzyme [Streptococcus parasanguinis ATCC 15912] Length = 362 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 127/342 (37%), Positives = 202/342 (59%), Gaps = 26/342 (7%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI--IYPEIVDEKISCDGTRKWL 89 + R +QIW+W+Y + ++ F+ M+++S+++ LN F + + IV E S DGT K+L Sbjct: 24 KFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLKQRIVQE--SADGTVKYL 81 Query: 90 LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149 P + IETV + + ++CV++QVGC++ C+FC +G K R+L EI+ Sbjct: 82 FELPDGML-----IETVLMRQHYGLSVCVTTQVGCNIGCTFCASGLIKKQRDLNNGEIVS 136 Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209 Q++L + D G ++ ++S+IV+MG+GEP N++NV K + +D G Sbjct: 137 QIMLVQKYF-DERGQDE-----------RVSHIVVMGIGEPFDNYNNVLKFIRTVNDDKG 184 Query: 210 LSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 L+ R IT+STSG I E + V LA+SLHA +NDLR+ ++ INR +P+E L Sbjct: 185 LAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNDLRSSIMKINRAFPIEKLFA 244 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGC-E 325 A +Y +N RR+TFEY+ML +ND AL L ++LK I + +NLIP+NP + Sbjct: 245 AIEYYIETTN-RRVTFEYIMLNEVNDGVEQALELAELLKNIKKLSYVNLIPYNPVSEHDQ 303 Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 Y S ++ ++ F + +K+ G + +R G DI AACGQL+S Sbjct: 304 YSRSPKERVMAFYDTLKKQGVNCVVRQEHGTDIDAACGQLRS 345 >gi|253584157|ref|ZP_04861355.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium varium ATCC 27725] gi|251834729|gb|EES63292.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium varium ATCC 27725] Length = 350 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 138/368 (37%), Positives = 209/368 (56%), Gaps = 30/368 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + ++ELEE ++ +G+ + + + QI+ W++ + +RD ++++S + R LL Sbjct: 3 EKINLLNLNQQELEELVISLGMKKFYGK----QIFNWLHQKIVRDINEITNLSLKDRELL 58 Query: 65 NQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQV 122 + I + ++ ++IS D T K+L + G IETV + K R TLC+SSQV Sbjct: 59 AEKTYIPFLNLLKQQISKIDKTEKFLFKLED---GNT--IETVLLRHKDKRNTLCISSQV 113 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC + C+FC TG VRNL EI+ QV + R L+ G I+N Sbjct: 114 GCPVKCAFCATGQDGFVRNLDVNEIINQVYTVERRLVKQ---------------GSNINN 158 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLA 240 IV MGMGEPL N NV K+L I S+ G++ SKR+IT+STSG VPNI ++ E++ + LA Sbjct: 159 IVFMGMGEPLLNLSNVLKALDILSNENGINISKRKITISTSGIVPNIEKILLEKLPIELA 218 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ISLH+ N R++++P+NR YPLE L + Y + RRI+FEY+M+ N S DA Sbjct: 219 ISLHSAINAKRDMIIPVNRSYPLEDLYAILQEYQRQT-KRRISFEYIMINEFNVSDVDAN 277 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLDIL 359 L + +NLIP+NP G E+ +K I F +K + +R +G DI Sbjct: 278 ALADFVHEFDHVVNLIPYNPVAGTEFERPSEKKIEKFFTFLKDVRKVNVTLRREKGTDID 337 Query: 360 AACGQLKS 367 ACGQL+ Sbjct: 338 GACGQLRQ 345 >gi|138894695|ref|YP_001125148.1| ribosomal RNA large subunit methyltransferase N [Geobacillus thermodenitrificans NG80-2] gi|205829768|sp|A4IM49|RLMN_GEOTN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|134266208|gb|ABO66403.1| Radical SAM family enzyme [Geobacillus thermodenitrificans NG80-2] Length = 364 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 128/365 (35%), Positives = 202/365 (55%), Gaps = 25/365 (6%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 S+ + +EL+E L+ G R +QI++W+Y + + DF M+++ + +R L Sbjct: 20 SIYSLTLDELKEWLVAHGEKP----FRATQIYEWLYGKRVTDFAEMTNLPKRLREQLASA 75 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 FSI + + ++ S DGT K+L + IETV + ++CV++QVGC + Sbjct: 76 FSITTLKTIVKQTSKDGTIKFLFE-----LHDGYSIETVLMRHNYGNSVCVTTQVGCRIG 130 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C+FC + L R+L A EI+ QV+ + L + ++S+IV+MG+ Sbjct: 131 CTFCASTLGGLKRHLEAGEIVAQVVQVQKALDE--------------TEERVSSIVVMGI 176 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 GEP N+D + K L I + S GL+ R IT+STSG +P I + +E + + AISLHA Sbjct: 177 GEPFDNYDALIKFLRIVNHSKGLNIGARHITVSTSGIIPKIYQFADEGMQINFAISLHAP 236 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 + +LR L+PIN+ YPL L++A R+Y RR+TFEY + G+ND A L ++L Sbjct: 237 TTELRTKLMPINKAYPLPKLMEAVRYYIE-KTGRRVTFEYGLFGGVNDQLEHAEQLAELL 295 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 KG+ +NLIP N P Y+ + + I F +K+ G + IR G DI AACGQL+ Sbjct: 296 KGLKCHVNLIPVNYVPERNYVRTPRNQIFAFERALKKHGINVTIRREHGHDIDAACGQLR 355 Query: 367 SLSKR 371 + ++ Sbjct: 356 AKERK 360 >gi|322385917|ref|ZP_08059558.1| cfr family radical SAM enzyme [Streptococcus cristatus ATCC 51100] gi|321270032|gb|EFX52951.1| cfr family radical SAM enzyme [Streptococcus cristatus ATCC 51100] Length = 362 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 132/368 (35%), Positives = 211/368 (57%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + REE+ ++ Q + R +QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTREEM----IEWAEAQGEKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + IV E S DGT K+L + IETV + + ++CV++QVG Sbjct: 58 DQFVVNPLKQRIVQE--SADGTVKYLFELSDGML-----IETVLMRQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI+ Q++L + D G ++ ++S+IV Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+S Sbjct: 159 VMGIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +NDLR ++ INR +P+E L A +Y +N RR+TFEY+ML +ND A L Sbjct: 219 LHAPNNDLRTSIMRINRSFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQAKEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++LK I + +NLIP+NP +Y S ++ ++ F + +K++G + +R G DI Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|325268958|ref|ZP_08135579.1| cfr family radical SAM enzyme [Prevotella multiformis DSM 16608] gi|324988579|gb|EGC20541.1| cfr family radical SAM enzyme [Prevotella multiformis DSM 16608] Length = 350 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 132/366 (36%), Positives = 198/366 (54%), Gaps = 29/366 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K++L+GM EL+E +G+P QI KW+Y + +R M++IS+ R L Sbjct: 5 KKNLLGMTLGELKEVAKSLGMPA----FTGGQIAKWLYTQHVRSIDEMTNISKANREKLA 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +++ + D + S DGT K+L FP G +ETVYIPE R TLCVSSQVGC Sbjct: 61 AAYAVGCKDPTDAQYSKDGTVKYL--FPTES--GKF-VETVYIPEDDRATLCVSSQVGCK 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q +LTA +IL QV +P K++NIV M Sbjct: 116 MNCLFCQTGKQGFEGSLTATDILNQVY------------------SLPERD-KLTNIVFM 156 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 G GEP+ N DNV ++ I + G +S +RIT+S+ G + R EE +AIS+H+ Sbjct: 157 GQGEPMDNLDNVLRATEILTAGFGYGWSPKRITVSSVGVKGKLKRFLEESDCHVAISMHS 216 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ R+ L+P R +E ++ +Y S+ RR++FEY++ KG+NDS A ++++ Sbjct: 217 PLHEQRSELMPAERGMSIESIVGLLANYD-FSHQRRLSFEYIVFKGVNDSEAHAKAIVRL 275 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG+ +INLI F+P P D + + F + + G + IR RG DI AACG L Sbjct: 276 LKGLDCRINLIRFHPIPNTPLQGVDDRKMEEFRNYLTQHGVFTTIRASRGQDIFAACGLL 335 Query: 366 KSLSKR 371 + ++ Sbjct: 336 STAKEK 341 >gi|322389001|ref|ZP_08062571.1| cfr family radical SAM enzyme [Streptococcus parasanguinis ATCC 903] gi|321144306|gb|EFX39714.1| cfr family radical SAM enzyme [Streptococcus parasanguinis ATCC 903] Length = 362 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 127/342 (37%), Positives = 202/342 (59%), Gaps = 26/342 (7%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI--IYPEIVDEKISCDGTRKWL 89 + R +QIW+W+Y + ++ F+ M+++S+++ LN F + + IV E S DGT K+L Sbjct: 24 KFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLKQRIVQE--SADGTVKYL 81 Query: 90 LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149 P + IETV + + ++CV++QVGC++ C+FC +G K R+L EI+ Sbjct: 82 FELPDGML-----IETVLMRQHYGLSVCVTTQVGCNIGCTFCASGLIKKQRDLNNGEIVS 136 Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209 Q++L + D G ++ ++S+IV+MG+GEP N++NV K + +D G Sbjct: 137 QIMLVQKYF-DERGQDE-----------RVSHIVVMGIGEPFDNYNNVLKFIRTVNDDKG 184 Query: 210 LSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 L+ R IT+STSG I E + V LA+SLHA +NDLR+ ++ INR +P+E L Sbjct: 185 LAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNDLRSSIMKINRAFPIEKLFA 244 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGC-E 325 A +Y +N RR+TFEY+ML +ND AL L ++LK I + +NLIP+NP + Sbjct: 245 AIEYYIETTN-RRVTFEYIMLNEVNDGVEQALELAELLKNIKKLSYVNLIPYNPVSEHDQ 303 Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 Y S ++ ++ F + +K+ G + +R G DI AACGQL+S Sbjct: 304 YSRSPKERVMAFYDTLKKQGVNCVVRQEHGTDIDAACGQLRS 345 >gi|196247685|ref|ZP_03146387.1| radical SAM enzyme, Cfr family [Geobacillus sp. G11MC16] gi|196212469|gb|EDY07226.1| radical SAM enzyme, Cfr family [Geobacillus sp. G11MC16] Length = 366 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 128/365 (35%), Positives = 202/365 (55%), Gaps = 25/365 (6%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 S+ + +EL+E L+ G R +QI++W+Y + + DF M+++ + +R L Sbjct: 22 SIYSLTLDELKEWLVAHGEKP----FRATQIYEWLYGKRVTDFAEMTNLPKRLREQLASA 77 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 FSI + + ++ S DGT K+L + IETV + ++CV++QVGC + Sbjct: 78 FSITTLKTIVKQTSKDGTIKFLFE-----LHDGYSIETVLMRHNYGNSVCVTTQVGCRIG 132 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C+FC + L R+L A EI+ QV+ + L + ++S+IV+MG+ Sbjct: 133 CTFCASTLGGLKRHLEAGEIVAQVVQVQKALDE--------------TEERVSSIVVMGI 178 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 GEP N+D + K L I + S GL+ R IT+STSG +P I + +E + + AISLHA Sbjct: 179 GEPFDNYDALIKFLRIVNHSKGLNIGARHITVSTSGIIPKIYQFADEGMQINFAISLHAP 238 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 + +LR L+PIN+ YPL L++A R+Y RR+TFEY + G+ND A L ++L Sbjct: 239 TTELRTKLMPINKAYPLPKLMEAVRYYIE-KTGRRVTFEYGLFGGVNDQLEHAEQLAELL 297 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 KG+ +NLIP N P Y+ + + I F +K+ G + IR G DI AACGQL+ Sbjct: 298 KGLKCHVNLIPVNYVPERNYVRTPRNQIFAFERALKKHGINVTIRREHGHDIDAACGQLR 357 Query: 367 SLSKR 371 + ++ Sbjct: 358 AKERK 362 >gi|329117105|ref|ZP_08245822.1| 23S rRNA m2A2503 methyltransferase [Streptococcus parauberis NCFD 2020] gi|326907510|gb|EGE54424.1| 23S rRNA m2A2503 methyltransferase [Streptococcus parauberis NCFD 2020] Length = 361 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 137/380 (36%), Positives = 208/380 (54%), Gaps = 33/380 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+EL + I + R +QIW W+Y + + F+ M++IS++ LLN Sbjct: 2 KPSIYSLTRDEL----IAWAIENGQKKFRATQIWDWLYKKRVDSFEEMTNISKDFIALLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 +F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DNFCVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L + EI Q++L + + E ++S++V Sbjct: 111 CNIGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDERGKDE------------RVSHVV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+ NV K L +D GL+ R IT+STSG I E + V LA+S Sbjct: 159 VMGIGEPFDNYTNVMKFLRTINDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +NDLR+ ++ INR +PLE L A +Y +N RR+TFEY+ML +ND A L Sbjct: 219 LHAPNNDLRSQIMRINRSFPLEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQAKEL 277 Query: 303 IKILKGIPA--KINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 + K I +NLIP+NP +Y S ++ + F + +K++G + +R G DI Sbjct: 278 ADLTKNIRKLCYVNLIPYNPVSEHDQYSRSPKERVSAFYDVLKKTGVNCVVRQEHGTDID 337 Query: 360 AACGQLKSLSKRIPKVPRQE 379 AACGQL+S K RQE Sbjct: 338 AACGQLRS---NTMKKDRQE 354 >gi|224107843|ref|XP_002314621.1| predicted protein [Populus trichocarpa] gi|222863661|gb|EEF00792.1| predicted protein [Populus trichocarpa] Length = 369 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 134/366 (36%), Positives = 201/366 (54%), Gaps = 44/366 (12%) Query: 38 IWKWIYVRGI-----RDFQGM------SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTR 86 +WK +Y GI + QG+ ++++ +L +H + + + DGTR Sbjct: 16 LWKRLYGNGIWAHHVDELQGILLSHPIYCLNKDFVKMLGEHAKFKALSLENILTASDGTR 75 Query: 87 KWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSFCYTGTQK-------- 137 K L R + IETV IP ++ R T+CVSSQVGC++ C FC+TG Q Sbjct: 76 KILFRLDDGLV-----IETVVIPCDRGRTTVCVSSQVGCAMNCQFCFTGRQANIFHFGTL 130 Query: 138 --LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195 L R+L+ EI+ Q + A+ LL + G +N+V MGMGEPL N D Sbjct: 131 MGLKRHLSTAEIIEQAVFAQRLLTNEVG--------------PFTNVVFMGMGEPLQNID 176 Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILV 255 +V K+ I GL FS R++T+STSG VP + R E LA+SL+A ++++RN ++ Sbjct: 177 SVIKAADIMVHDQGLHFSPRKVTVSTSGLVPQLKRFLHESNCALAVSLNATTDEVRNWIM 236 Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINL 315 PINRKY L +L+ R GL N+ ++ FEYVML+G+NDS DA LI +++GIP KINL Sbjct: 237 PINRKYNLGLLLQTLREELGLKNSYKVLFEYVMLEGVNDSDDDAYRLIDLVQGIPCKINL 296 Query: 316 IPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL---KSLSKRI 372 I FNP G ++ + + ++ F + + +R +G D +AACGQL ++ + Sbjct: 297 IQFNPHCGSQFRPTSTEKMIKFRNILAEAKCVVFMRYSKGDDQMAACGQLGKPGAIQTPL 356 Query: 373 PKVPRQ 378 +VP Q Sbjct: 357 IRVPEQ 362 >gi|319901401|ref|YP_004161129.1| 23S rRNA m(2)A-2503 methyltransferase [Bacteroides helcogenes P 36-108] gi|319416432|gb|ADV43543.1| 23S rRNA m(2)A-2503 methyltransferase [Bacteroides helcogenes P 36-108] Length = 346 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 132/371 (35%), Positives = 196/371 (52%), Gaps = 29/371 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K+ L+G+ EL+ + +G+P QI W+Y + + MS++S R L Sbjct: 1 MQKQPLLGLTLSELQNVVKNLGMPG----FAAKQIASWLYDKKVLSIDEMSNLSLRHREL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L + + + VD S DGT K+L R G +E VYIP+ R TLCVSSQVG Sbjct: 57 LKELYEVGAEIPVDAMRSVDGTVKYLYR-----AGEGHFVEAVYIPDDDRATLCVSSQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG Q NLTA +I+ Q+ P + K++N+V Sbjct: 112 CKMNCKFCMTGKQGFTANLTANQIINQI-------SSLPERD------------KLTNVV 152 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N D V K+L + + S G S+S +RITLS+ G + R EE LAISL Sbjct: 153 MMGMGEPLDNLDEVLKALEVMTASYGYSWSPKRITLSSVGLRKGLQRFIEESDCHLAISL 212 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H R L+P + + + +++ R+Y S RR++FEY++ KG+NDS A L+ Sbjct: 213 HTPVPLQRRELMPAEKAFSITEIVELLRNYD-FSKQRRLSFEYIVFKGVNDSLLYAKELL 271 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+L+G+ +INLI F+ P + +D + + + + G + IR+ RG DI AACG Sbjct: 272 KLLRGLDCRINLIRFHAIPEVDLEGADMETMTALRDYLTAHGLFTTIRSSRGEDIFAACG 331 Query: 364 QLKSLSKRIPK 374 L + + K Sbjct: 332 MLSTAKQEDDK 342 >gi|309790982|ref|ZP_07685522.1| radical SAM protein [Oscillochloris trichoides DG6] gi|308226955|gb|EFO80643.1| radical SAM protein [Oscillochloris trichoides DG6] Length = 375 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 142/381 (37%), Positives = 201/381 (52%), Gaps = 28/381 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + SL M +LE L G P R QI++ +YV D M+D+ Q +R Sbjct: 1 MDNPSLYAMTLPDLEALLRAWGQPA----FRARQIYRQLYVNLAADPAAMTDLPQALRER 56 Query: 64 LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L ++ +V + S DG TRK L P V+IETV + R T+CVS+Q Sbjct: 57 LAHEATLNPLRLVRSQSSADGLTRKALFALP-----DGVQIETVLMIYADRATVCVSTQA 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLA----RSLL--GDFPG-CEDIEGMVIPSV 175 GC++ CSFC T T L RNLTA E++ QVL A RSL PG EG Sbjct: 112 GCAMGCSFCATATLGLRRNLTAGEMVAQVLWASREVRSLAVPATQPGHAHSEEGATWWGE 171 Query: 176 GR-------KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228 R ++SN+V MGMGEP N+D ++ + G + R +T+ST G VP I Sbjct: 172 ARALRRPLERVSNLVFMGMGEPFANYDRWWDAVQCLHNPQGFNMGARSMTVSTVGLVPGI 231 Query: 229 ARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 R+ + + + LAISLHA + LRN LVP+N +YP+ ++ A + Y RR++FEYV Sbjct: 232 LRLADAGLPINLAISLHAPDDALRNELVPVNTRYPIREVLAAAQTYIE-KTGRRVSFEYV 290 Query: 288 MLKGINDSPRDALNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSG 345 +++G ND P AL L K+L+ + +NLIP+NP PG SD + + F + + G Sbjct: 291 LIQGRNDHPHQALALAKLLRSQSLICHVNLIPWNPLPGSPLARSDLQRVHAFQQVLVDYG 350 Query: 346 YSSPIRTPRGLDILAACGQLK 366 + +R RG++I AACGQL Sbjct: 351 LACTVRVERGVEIAAACGQLA 371 >gi|319939639|ref|ZP_08013998.1| ribosomal RNA large subunit methyltransferase N [Streptococcus anginosus 1_2_62CV] gi|319811228|gb|EFW07534.1| ribosomal RNA large subunit methyltransferase N [Streptococcus anginosus 1_2_62CV] Length = 367 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 127/342 (37%), Positives = 200/342 (58%), Gaps = 26/342 (7%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI--IYPEIVDEKISCDGTRKWL 89 + R +QIW+W+Y + ++ F M++IS+++ L F + + +V E S DGT K+L Sbjct: 31 KFRATQIWEWLYRKRVQSFAEMTNISKDLLAKLEDEFVVNPLRQRVVQE--SADGTVKYL 88 Query: 90 LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149 P + IETV + + ++CV++QVGC++ C+FC +G K R+L EI+ Sbjct: 89 FELPDGML-----IETVLMRQHYGLSVCVTTQVGCNIGCTFCASGLIKKQRDLNNGEIMS 143 Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209 Q++L + D G G ++S+IV+MG+GEP N+DNV K + +D G Sbjct: 144 QIMLVQKYF-------DERGQ-----GERVSHIVVMGIGEPFDNYDNVLKFVRTVNDDKG 191 Query: 210 LSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 L+ R IT+STSG I E + V LA+SLHA +N+LR+ ++ INR +P+E L Sbjct: 192 LAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNELRSSIMKINRAFPIEKLFA 251 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGC-E 325 A +Y +N RR+TFEY+ML +ND AL L ++LK I + +NLIP+NP + Sbjct: 252 AIEYYIETTN-RRVTFEYIMLNEVNDGVEQALELAELLKNIKKLSYVNLIPYNPVSEHDQ 310 Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 Y S ++ ++ F + +K++G + +R G DI AACGQL+S Sbjct: 311 YSRSPKERVMAFYDTLKKNGINCVVRQEHGTDIDAACGQLRS 352 >gi|291522861|emb|CBK81154.1| 23S rRNA m(2)A-2503 methyltransferase [Coprococcus catus GD/7] Length = 352 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 121/337 (35%), Positives = 195/337 (57%), Gaps = 25/337 (7%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISC-DGTRKWLL 90 + R QI++W++VR F M+++S+++R L++ + + E+V++ +S DGT K+L Sbjct: 27 KFRAKQIYEWMHVRLADSFDEMTNLSKDLRQKLSEQCVLTHLEMVEKYVSAIDGTAKYLF 86 Query: 91 RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150 + I IE+V + K ++C+SSQVGC + C FC + L R + A E+L + Sbjct: 87 KLSDDRI-----IESVLMHYKHGNSVCISSQVGCRMGCRFCASTLGGLERQMLASEMLDE 141 Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210 + + G ++SN+V+MG GEPL N+D + + + I + + GL Sbjct: 142 IY-----------------QIQKDSGERVSNVVVMGTGEPLDNYDALVRMIDILTHAPGL 184 Query: 211 SFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 S+R +T+ST G VP I + + ++ + LAISLHAV+++ R L+PI Y +E ++ A Sbjct: 185 DISQRNVTVSTCGLVPKIYELADLKLQITLAISLHAVNDEKRRELMPIANTYSIEEILKA 244 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 CR+Y +N RRITFEY ++KG+NDS DA L +L+GI INLIP NP Y + Sbjct: 245 CRYYYSQTN-RRITFEYSLVKGVNDSREDAKALAALLEGINCHINLIPVNPIEERSYRQT 303 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + ++ F +++ G + IR G DI AACGQL+ Sbjct: 304 EADAVLKFKNMLEKYGRNVTIRREMGRDIQAACGQLR 340 >gi|307703606|ref|ZP_07640548.1| UPF0063 protein yfgB [Streptococcus oralis ATCC 35037] gi|331266156|ref|YP_004325786.1| Radical SAM superfamily, predicted Fe-S-cluster redox enzyme [Streptococcus oralis Uo5] gi|307623013|gb|EFO02008.1| UPF0063 protein yfgB [Streptococcus oralis ATCC 35037] gi|326682828|emb|CBZ00445.1| Radical SAM superfamily, predicted Fe-S-cluster redox enzyme [Streptococcus oralis Uo5] Length = 361 Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 130/368 (35%), Positives = 213/368 (57%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+ ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI+ Q++L + D G ++ ++S+IV Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N++NV + +D G++ R IT+STSG I E + V LA+S Sbjct: 159 VMGIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ INR +P+E L A +Y +N RR+TFEY+ML +ND AL L Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++LK I + +NLIP+NP +Y S ++ ++ F + +K+ G + +R G DI Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKKGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|307706322|ref|ZP_07643134.1| UPF0063 protein yfgB [Streptococcus mitis SK321] gi|307708956|ref|ZP_07645416.1| UPF0063 protein yfgB [Streptococcus mitis SK564] gi|307618240|gb|EFN97395.1| UPF0063 protein yfgB [Streptococcus mitis SK321] gi|307620292|gb|EFN99408.1| UPF0063 protein yfgB [Streptococcus mitis SK564] Length = 361 Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 130/368 (35%), Positives = 213/368 (57%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+ ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI+ Q++L + D G ++ ++S+IV Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N++NV + +D G++ R IT+STSG I E + V LA+S Sbjct: 159 VMGIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ INR +P+E L A +Y +N RR+TFEY+ML +ND AL L Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++LK I + +NLIP+NP +Y S ++ ++ F + +K+ G + +R G DI Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|315607782|ref|ZP_07882775.1| cfr family radical SAM enzyme [Prevotella buccae ATCC 33574] gi|315250251|gb|EFU30247.1| cfr family radical SAM enzyme [Prevotella buccae ATCC 33574] Length = 358 Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 133/375 (35%), Positives = 207/375 (55%), Gaps = 30/375 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SL+G+ EL++ ++G+P Q+ KW+Y + ++ M++IS+ R L Sbjct: 4 KTSLLGLSLAELKDVAKRLGMPA----FTGGQMAKWLYGQHVKSIDEMTNISKANREKLA 59 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIG----GPVE-IETVYIPEKSRGTLCVSS 120 H++I +DE+ S DGT K+L +G PV+ +ETVYIP+K R TLCVS Sbjct: 60 GHYTIGCAAPIDEQRSKDGTVKYLFPVTTTAVGENREAPVKFVETVYIPDKDRATLCVSC 119 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC + C FC TG Q NL+ +IL QV +P V K++ Sbjct: 120 QVGCKMNCLFCQTGKQGFEGNLSVADILNQVY------------------SLPEVD-KLT 160 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 NIV MG GEP+ N DNV ++ I + G ++S +RIT+S+ G + R EE +A Sbjct: 161 NIVFMGQGEPMDNLDNVLRATEILTADYGWAWSPKRITVSSVGVKNKLRRFLEESDCHVA 220 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 IS+H+ + R L+P R +E +++ ++Y S+ RR++FEY++ G+NDS A Sbjct: 221 ISMHSPLPEQRAELMPAQRGMGIEEVVELLKNYD-FSHQRRLSFEYIVFGGVNDSNAHAR 279 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 ++++LKG+ +INLI F+ PG +++K + + + G + IR RG DI A Sbjct: 280 EIVRLLKGLDCRINLIRFHQIPGVALHGAEEKRMEELRDYLTAHGVFTTIRASRGEDIFA 339 Query: 361 ACGQLKSLSKRIPKV 375 ACG L S SK+I ++ Sbjct: 340 ACGLL-STSKKIEEL 353 >gi|292670255|ref|ZP_06603681.1| cfr family radical SAM enzyme [Selenomonas noxia ATCC 43541] gi|292648207|gb|EFF66179.1| cfr family radical SAM enzyme [Selenomonas noxia ATCC 43541] Length = 346 Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 135/362 (37%), Positives = 196/362 (54%), Gaps = 26/362 (7%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 ++ G +E L +L + IP R R QI +W+Y RG M ++ +E+R L + Sbjct: 2 NIFGWTKEALAASLREHQIP----RFRADQIVRWMYQRGAVSLHAMDNLPKELRARLAEI 57 Query: 68 FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 FSI P ++ S DG T K L F ETV + ++CVS+Q GC + Sbjct: 58 FSIERPAVISRLHSADGATIKLLYEF-----ADGQTAETVLMRHAYGNSVCVSTQAGCRM 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC + L RNLTA EI QV+ + DF E G + IV+MG Sbjct: 113 GCAFCASTLNGLQRNLTAGEIAAQVIG----IADFLRAE----------GGHVDTIVVMG 158 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 GEPL N+DNV +L + + + S R ITLSTSG VP I R+ EE I + L+ISLHA Sbjct: 159 SGEPLENYDNVVAALRLLHEDYTIGLSYRGITLSTSGIVPGIERLAEEGIPISLSISLHA 218 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + +LR+ ++P+NR YPL ++ A Y + RR+T+EY++++ +ND PRDA L K+ Sbjct: 219 PTEELRSEIMPVNRMYPLADVLRAACFYAERTK-RRVTYEYILIRDVNDGPRDAEQLAKL 277 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G A +NLIP NP D+ I F + + + ++ +R G DI AACGQL Sbjct: 278 LRGQLASVNLIPINPVAERSLFRPDKAAIRRFQKILAQRHITATLRREMGTDIQAACGQL 337 Query: 366 KS 367 ++ Sbjct: 338 RN 339 >gi|329926694|ref|ZP_08281104.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF5] gi|328939034|gb|EGG35400.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF5] Length = 353 Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 134/376 (35%), Positives = 218/376 (57%), Gaps = 28/376 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K S+ G+ ++L L + G H + R +Q+W+W+Y + + F M+D+ E L Sbjct: 1 MNKPSIYGLTLDQLTAWLGERG----HKKFRATQVWEWLYRKRVTSFSDMTDVHPECLQL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +H++I+ E ++ S DGT K+L + + G + IETV + K ++CV++QVG Sbjct: 57 LEEHYTILTLEEHTKQESLDGTVKFLFKL----VDGNL-IETVLMRHKFGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ CSFC +G K R+L+A EI+ QV+ + L D G + ++S++V Sbjct: 112 CNIGCSFCASGLLKKSRDLSAAEIVEQVMQVQLHL-DRRGSSE-----------RVSHLV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242 +MG+GEP N++N+ + + D GL+ R IT+STSG I + ++GV LAIS Sbjct: 160 VMGIGEPFDNYENMSDFIRVIKDHKGLAIGPRHITVSTSGLANKIVEFADSDLGVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA ++++R ++ IN+ P+E L+ A +Y +N RRIT EY++LK +ND AL L Sbjct: 220 LHAPNDEIRTRIMKINKAIPIEKLMAAIDYYLEKTN-RRITLEYILLKDVNDQREHALEL 278 Query: 303 IKIL--KGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 +++ + A +NLIP+NP +Y S ++ I F + +K+ G S +R G DI Sbjct: 279 AELVGERRNLANVNLIPYNPVDEHSQYQRSTKESITGFYDTLKKQGISCSVRLEHGTDID 338 Query: 360 AACGQLKSLSKRIPKV 375 AACGQL+ SK+I K Sbjct: 339 AACGQLR--SKQIKKA 352 >gi|289167665|ref|YP_003445934.1| hypothetical protein smi_0819 [Streptococcus mitis B6] gi|288907232|emb|CBJ22067.1| conserved hypothetical protein [Streptococcus mitis B6] Length = 361 Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 130/368 (35%), Positives = 213/368 (57%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+ ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI+ Q++L + D G ++ ++S+IV Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N++NV + +D G++ R IT+STSG I E + V LA+S Sbjct: 159 VMGIGEPFDNYNNVLNFIRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ INR +P+E L A +Y +N RR+TFEY+ML +ND AL L Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++LK I + +NLIP+NP +Y S ++ ++ F + +K+ G + +R G DI Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|229162800|ref|ZP_04290757.1| Radical SAM family enzyme [Bacillus cereus R309803] gi|228620682|gb|EEK77551.1| Radical SAM family enzyme [Bacillus cereus R309803] Length = 362 Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 127/368 (34%), Positives = 208/368 (56%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++S+ +R L Sbjct: 15 KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I + ++ S DGT K+L + + IETV + + ++CV++QVGC Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQ-----LYDGYSIETVLMRHEYGNSICVTTQVGC 125 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TSERVSSLVV 171 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+DN+ L I + GL R +T+STSG +P I + EE + + AISL Sbjct: 172 MGIGEPFDNYDNLMGFLRITNHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++LR+ L+PINR Y L L++A ++Y + RRITFEY + G ND A L Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 351 QLRAKERK 358 >gi|302386502|ref|YP_003822324.1| radical SAM enzyme, Cfr family [Clostridium saccharolyticum WM1] gi|302197130|gb|ADL04701.1| radical SAM enzyme, Cfr family [Clostridium saccharolyticum WM1] Length = 350 Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 121/336 (36%), Positives = 196/336 (58%), Gaps = 25/336 (7%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKIS-CDGTRKWLLR 91 R Q+++W++ + DF M+++ ++ L Q + IV+EKIS DGTRK+L Sbjct: 26 FRAKQLYEWMHQKLAADFNEMTNLPNSLKETLFQQTELTSLAIVEEKISNIDGTRKYLFA 85 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 G V IE+V + K ++C+SSQVGC + C FC + L RNL+ E+L Q+ Sbjct: 86 LS----DGNV-IESVLMKYKHGNSVCISSQVGCRMGCRFCASTLDGLERNLSPSEMLDQI 140 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 + + G ++SN+V+MG GEPL N+D++ + + + +D GL+ Sbjct: 141 Y-----------------RIQKNTGERVSNVVVMGSGEPLDNYDHLVQFVRLLTDENGLN 183 Query: 212 FSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 S+R IT+ST G VP I ++ EE + + LA+SLHA ++++R L+P+ ++PL+ ++DAC Sbjct: 184 ISQRNITVSTCGIVPGILKLAEEDLQITLALSLHAPNDEVRKTLMPVANRFPLKDVLDAC 243 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 + Y RR+TFEY ++ G+ND+ ++A L +LKG +NLIP NP ++ SD Sbjct: 244 QTYFE-KTGRRLTFEYSLVSGVNDNLKEASALAALLKGQHGHVNLIPVNPIKERNFVQSD 302 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +K I F ++++G + IR G DI ACGQL+ Sbjct: 303 RKAIEAFKNLLEKNGINVTIRREMGRDINGACGQLR 338 >gi|310642737|ref|YP_003947495.1| ribosomal RNA large subunit methyltransferase n [Paenibacillus polymyxa SC2] gi|309247687|gb|ADO57254.1| Ribosomal RNA large subunit methyltransferase N [Paenibacillus polymyxa SC2] Length = 355 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 128/365 (35%), Positives = 198/365 (54%), Gaps = 25/365 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 L K + + EEL++ G P R QI+ W+YV+ I +F M+++S+ +R Sbjct: 9 LMKPFIYDLTLEELQDWAKNNGEPA----FRGGQIFDWLYVKRINNFSEMTNLSKALREK 64 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L + FS + + + S DGT K+L + IETV + ++CV++QVG Sbjct: 65 LEEQFSFVTLHEITKLESKDGTVKFLF-----GLHDDHAIETVIMRHNYGNSICVTTQVG 119 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C+FC + L RNLTA EI QV+ A+ +L ++S+IV Sbjct: 120 CRIGCTFCASTLGGLKRNLTAGEITAQVVQAQKIL--------------DKTNERVSSIV 165 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG GEP N++ L GL+ +R IT+STSG VPNI + +E + LAIS Sbjct: 166 IMGSGEPFENYEATMTFLRTMIHEKGLNIGQRHITVSTSGIVPNIYKFADEDTQINLAIS 225 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 +HA ++ LR+ L+P+NR+YP + ++D+ R+Y RRI+FEY ++ G+ND A L Sbjct: 226 IHAPNDALRSKLMPVNRRYPFKDVMDSLRYYLA-KTGRRISFEYALIGGVNDQAEHAEEL 284 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK + +NLIP N P +Y+ + + DI F + G + IR +G DI AAC Sbjct: 285 ADVLKDMLCHVNLIPVNHVPERKYVRTSRSDIFNFQRILAEKGVNVTIRREQGHDIAAAC 344 Query: 363 GQLKS 367 GQL++ Sbjct: 345 GQLRA 349 >gi|229086417|ref|ZP_04218593.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus Rock3-44] gi|228696933|gb|EEL49742.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus Rock3-44] Length = 362 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 126/368 (34%), Positives = 208/368 (56%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S+ + E++E L + G P + R QI+ W+Y + +++++ M+++S+ +R L Sbjct: 15 KKPSIYSLQLHEMQEWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMTNLSKGLRDKL 70 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I + ++ S DGT K+L + + IETV + + ++CV++QVGC Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQ-----LYDGYSIETVLMRHEYGNSICVTTQVGC 125 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+DN+ L I + G+ R +T+STSG +P I + EE + + AISL Sbjct: 172 MGIGEPFDNYDNLMAFLRIVNHEKGIHIGARHMTVSTSGIIPKIYKFAEEDMQINFAISL 231 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA + +LR+ L+PINR Y L L++A ++Y + RRITFEY + G ND A L Sbjct: 232 HAPNTELRSKLMPINRAYKLPDLMEAIKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG Sbjct: 291 QLLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 351 QLRAKERK 358 >gi|322376321|ref|ZP_08050814.1| radical SAM enzyme, Cfr family [Streptococcus sp. M334] gi|321282128|gb|EFX59135.1| radical SAM enzyme, Cfr family [Streptococcus sp. M334] Length = 361 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 130/368 (35%), Positives = 213/368 (57%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+ ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI+ Q++L + D G ++ ++S+IV Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N++NV + +D G++ R IT+STSG I E + V LA+S Sbjct: 159 VMGIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ INR +P+E L A +Y +N RR+TFEY+ML +ND AL L Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++LK I + +NLIP+NP +Y S ++ ++ F + +K+ G + +R G DI Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|313901449|ref|ZP_07834906.1| 23S rRNA m(2)A-2503 methyltransferase [Thermaerobacter subterraneus DSM 13965] gi|313468277|gb|EFR63734.1| 23S rRNA m(2)A-2503 methyltransferase [Thermaerobacter subterraneus DSM 13965] Length = 353 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 199/359 (55%), Gaps = 26/359 (7%) Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69 +G++ EEL L G P R QI+ W + RG+ F M+D+ +E+R L + Sbjct: 7 VGLLPEELARELEAWGQPA----YRGRQIFAWFHRRGVTRFSAMTDLPRELRERLAEQGD 62 Query: 70 IIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 P + ++ DGTRK+LL + IETV + + +LCVSSQVGC++ C Sbjct: 63 PAVPAVRRLQVDPEDGTRKYLLELADGQL-----IETVLMRHRYGLSLCVSSQVGCAMGC 117 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC + LVRNLTA E+ Q+L+ L + G ++S++V+MG+G Sbjct: 118 RFCASTLGGLVRNLTAAEMAGQLLVVNRDLAER--------------GERVSHLVVMGIG 163 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVS 247 EPL N D + L +A +G S R +T+STSG VP I ++ E + + LA+SLHA + Sbjct: 164 EPLQNLDATLQFLRVAHHPLGAGISYRHMTVSTSGLVPRIRQLAREGLPITLAVSLHAPN 223 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 + LR+ L+P+NR++P+ L+ ACR Y RRITFEYV+++ +ND P A L +++ Sbjct: 224 DALRSWLMPVNRRWPIAELMAACREYVE-ETGRRITFEYVLIEDVNDRPEHARELARLVG 282 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + A +NLIP+NP + + + F+ ++R G + +R G I AACGQL+ Sbjct: 283 PLHAHVNLIPWNPVSERPFKAPSPERVQAFAAELRRQGVNVTVRRELGQRIEAACGQLR 341 >gi|229098333|ref|ZP_04229280.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus Rock3-29] gi|229104426|ref|ZP_04235095.1| Radical SAM family enzyme [Bacillus cereus Rock3-28] gi|229117350|ref|ZP_04246728.1| Radical SAM family enzyme [Bacillus cereus Rock1-3] gi|228666250|gb|EEL21714.1| Radical SAM family enzyme [Bacillus cereus Rock1-3] gi|228679124|gb|EEL33332.1| Radical SAM family enzyme [Bacillus cereus Rock3-28] gi|228685231|gb|EEL39162.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus Rock3-29] Length = 362 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 127/368 (34%), Positives = 208/368 (56%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++S+ +R L Sbjct: 15 KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I + ++ S DGT K+L + + IETV + + ++CV++QVGC Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQ-----LYDGYSIETVLMRHEYGNSICVTTQVGC 125 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+DN+ L I + GL R +T+STSG +P I + EE + + AISL Sbjct: 172 MGIGEPFDNYDNLMGFLRITNHEKGLHIGARHMTVSTSGIIPKIYKFAEEELQINFAISL 231 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++LR+ L+PINR Y L L++A ++Y + RRITFEY + G ND A L Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 351 QLRAKERK 358 >gi|324995259|gb|EGC27171.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK678] Length = 362 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 131/369 (35%), Positives = 214/369 (57%), Gaps = 32/369 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+E+ ++ Q + R +QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQEM----IEWAEAQGEKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKI---SCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 F ++ P + ++I S DGT K+L P + IETV + + ++CV++QV Sbjct: 58 DQF-VVNP--LKQRIVQGSADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQV 109 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC++ C+FC +G K R+L EI+ Q++L + D G ++ ++S+I Sbjct: 110 GCNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHI 157 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 V+MG+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+ Sbjct: 158 VVMGIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAV 217 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA +NDLR ++ INR +P+E L A +Y +N RR+TFEY+ML +ND A Sbjct: 218 SLHAPNNDLRTSIMRINRSFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQAKE 276 Query: 302 LIKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 L ++LK I + +NLIP+NP +Y S ++ ++ F + +K++G + +R G DI Sbjct: 277 LAELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDI 336 Query: 359 LAACGQLKS 367 AACGQL+S Sbjct: 337 DAACGQLRS 345 >gi|255038476|ref|YP_003089097.1| radical SAM enzyme, Cfr family [Dyadobacter fermentans DSM 18053] gi|254951232|gb|ACT95932.1| radical SAM enzyme, Cfr family [Dyadobacter fermentans DSM 18053] Length = 350 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 127/335 (37%), Positives = 185/335 (55%), Gaps = 22/335 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI++WI+ + F M+++S R L+N+HF I ++ ++ S DGT K + Sbjct: 30 FRAKQIYEWIWKKSAHSFDEMTNLSLATRELMNEHFVIHSLDVAKKQHSNDGTVKSAFKL 89 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G + +E V IP R T CVSSQVGCSLTC FC TG RNL A EI QV+ Sbjct: 90 ----FDGNL-VEGVLIPAADRMTACVSSQVGCSLTCKFCATGYMDRKRNLEAGEIYDQVV 144 Query: 153 -LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 +AR F ++NIV MGMGEPL N+ NV KS+ + GL+ Sbjct: 145 AIARQAEATFNA--------------PLTNIVYMGMGEPLLNYANVLKSIEYITSPKGLN 190 Query: 212 FSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 S +RIT+ST+G I ++ + E+ LA+SLHA ++ RN ++PIN L+ L DA Sbjct: 191 MSPKRITVSTAGIAKMITKLADDEVRFRLALSLHAANDKKRNQIMPINESNSLDNLADAL 250 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 ++ + RITFEY++ NDS +DA L + K +PA++N+I +NP ++ ++ Sbjct: 251 NYFYKKT-GNRITFEYIVFNNFNDSLQDAKELWEFCKRVPARVNIIEYNPIAEADFKNTE 309 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + F+ ++ G S +R RG DI AACGQL Sbjct: 310 ADRLDKFAAFLEDRGVSVHVRRSRGKDIDAACGQL 344 >gi|291458606|ref|ZP_06597996.1| radical SAM enzyme, Cfr family [Oribacterium sp. oral taxon 078 str. F0262] gi|291419139|gb|EFE92858.1| radical SAM enzyme, Cfr family [Oribacterium sp. oral taxon 078 str. F0262] Length = 362 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 129/350 (36%), Positives = 195/350 (55%), Gaps = 39/350 (11%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD-EKISCDGTRKWLLR 91 R QI+ W++ R F MS++S +R L +HF + PE V S DGTRK++ R Sbjct: 24 FRAEQIYSWLHERLCASFDEMSNLSLPLREKLREHFRLFLPEPVRILSSSLDGTRKFIFR 83 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 I IE+V++ + T+C+SSQVGC + C FC + + L RNL+A E+L QV Sbjct: 84 LEDGHI-----IESVFMRYRHGNTVCISSQVGCRMGCRFCASTLEGLARNLSAAEMLTQV 138 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 + LLG+ +ISN+V+MG GEPL N++N+ K + + SD GL Sbjct: 139 YQIQRLLGE-----------------RISNVVVMGSGEPLDNYENLTKFVRMISDERGLH 181 Query: 212 FSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 S+R +T+ST G VP + R+ EE + LA+SLHA ++++R L+PI +YPL L+ A Sbjct: 182 LSQRNLTVSTCGLVPELFRLSEEGFQLTLALSLHAPNDEIRRRLMPIAARYPLSELLPAV 241 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--------------KGIPAKINLI 316 RHY + RR++FEY +++ +ND+ +A L +L KG P +NLI Sbjct: 242 RHYFERT-GRRVSFEYSVVRDLNDTREEAEALSSLLKKLRDEGEGSAGQQKGFPLHVNLI 300 Query: 317 PFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 P NP + +++ I F ++++G S+ IR G DI ACGQL+ Sbjct: 301 PVNPIRERSWERPERRRIEDFQHILEKNGISATIRREMGADISGACGQLR 350 >gi|218234565|ref|YP_002368665.1| conserved hypothetical protein TIGR00048 [Bacillus cereus B4264] gi|229152063|ref|ZP_04280258.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus m1550] gi|254807154|sp|B7HDY7|RLMN_BACC4 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|218162522|gb|ACK62514.1| conserved hypothetical protein TIGR00048 [Bacillus cereus B4264] gi|228631412|gb|EEK88046.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus m1550] Length = 362 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 127/369 (34%), Positives = 209/369 (56%), Gaps = 25/369 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++S+ +R Sbjct: 14 MKKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDK 69 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L+ F I + ++ S DGT K+L + + IETV + + ++CV++QVG Sbjct: 70 LSNSFDITTLNTLVKQTSSDGTIKFLFQ-----LYDGYSIETVLMRHEYGNSICVTTQVG 124 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C+FC + L RNL A EI+ QV+ + L + ++S++V Sbjct: 125 CRIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLV 170 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+DN+ L I + GL R +T+STSG +P I + EE + + AIS Sbjct: 171 VMGIGEPFDNYDNLMGFLRIINHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAIS 230 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +++LR+ L+PINR Y L L++A ++Y + RRITFEY + G ND A L Sbjct: 231 LHAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRT-GRRITFEYGLFGGENDQVEHAEEL 289 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AAC Sbjct: 290 AALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAAC 349 Query: 363 GQLKSLSKR 371 GQL++ ++ Sbjct: 350 GQLRAKERK 358 >gi|322375441|ref|ZP_08049954.1| radical SAM enzyme, Cfr family [Streptococcus sp. C300] gi|321279704|gb|EFX56744.1| radical SAM enzyme, Cfr family [Streptococcus sp. C300] Length = 361 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 130/368 (35%), Positives = 213/368 (57%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+ ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI+ Q++L + D G ++ ++S+IV Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N++NV + +D G++ R IT+STSG I E + V LA+S Sbjct: 159 VMGIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ INR +P+E L A +Y +N RR+TFEY+ML +ND AL L Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIEKTN-RRVTFEYIMLNEVNDGVEQALEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++LK I + +NLIP+NP +Y S ++ ++ F + +K+ G + +R G DI Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKKGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|315613373|ref|ZP_07888282.1| cfr family radical SAM enzyme [Streptococcus sanguinis ATCC 49296] gi|315314608|gb|EFU62651.1| cfr family radical SAM enzyme [Streptococcus sanguinis ATCC 49296] Length = 361 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 130/368 (35%), Positives = 213/368 (57%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+ ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+ + LN Sbjct: 2 KPSIYSLTRQAMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKGLIAKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 EQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI+ Q++L + D G ++ ++S+IV Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N++NV + +D G++ R IT+STSG I E + V LA+S Sbjct: 159 VMGIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ INR +P+E L A +Y +N RR+TFEY+ML +ND AL L Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++LK I + +NLIP+NP +Y S ++ ++ F + +K+ G + +R G DI Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKKGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|228940952|ref|ZP_04103511.1| Radical SAM family enzyme [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973881|ref|ZP_04134457.1| Radical SAM family enzyme [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980471|ref|ZP_04140781.1| Radical SAM family enzyme [Bacillus thuringiensis Bt407] gi|228779291|gb|EEM27548.1| Radical SAM family enzyme [Bacillus thuringiensis Bt407] gi|228785906|gb|EEM33909.1| Radical SAM family enzyme [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818788|gb|EEM64854.1| Radical SAM family enzyme [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326941633|gb|AEA17529.1| radical SAM protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 362 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 127/368 (34%), Positives = 208/368 (56%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++S+ +R L Sbjct: 15 KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I + ++ S DGT K+L + + IETV + + ++CV++QVGC Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQ-----LYDGYSIETVLMRHEYGNSICVTTQVGC 125 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+DN+ L I + GL R +T+STSG +P I + EE + + AISL Sbjct: 172 MGIGEPFDNYDNLMGFLRITNHEKGLHIGARHMTVSTSGIIPKIYKFAEEELQINFAISL 231 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++LR+ L+PINR Y L L++A ++Y + RRITFEY + G ND A L Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 351 QLRAKERK 358 >gi|229019062|ref|ZP_04175900.1| Radical SAM family enzyme [Bacillus cereus AH1273] gi|229025306|ref|ZP_04181725.1| Radical SAM family enzyme [Bacillus cereus AH1272] gi|228735997|gb|EEL86573.1| Radical SAM family enzyme [Bacillus cereus AH1272] gi|228742230|gb|EEL92392.1| Radical SAM family enzyme [Bacillus cereus AH1273] Length = 362 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 126/368 (34%), Positives = 207/368 (56%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++S+ +R L Sbjct: 15 KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I + ++ S DGT K+L + + IETV + + ++CV++QVGC Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQ-----LYDGYSIETVLMRHEYGNSICVTTQVGC 125 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+DN+ L I + G+ R +T+STSG VP I + EE + + AISL Sbjct: 172 MGIGEPFDNYDNLMSFLRIVNHEKGIHIGARHMTVSTSGIVPKIYKFAEEDMQINFAISL 231 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ + +LR+ L+PINR Y L L++A ++Y + RRITFEY + G ND A L Sbjct: 232 HSANTELRSKLMPINRAYKLPDLMEAVKYYVNRT-GRRITFEYGLFGGENDQVEQAEELA 290 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 351 QLRAKERK 358 >gi|167630204|ref|YP_001680703.1| radical sam enzyme, cfr family, putative [Heliobacterium modesticaldum Ice1] gi|205829773|sp|B0TGT1|RLMN_HELMI RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|167592944|gb|ABZ84692.1| radical sam enzyme, cfr family, putative [Heliobacterium modesticaldum Ice1] Length = 385 Score = 220 bits (561), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 199/372 (53%), Gaps = 34/372 (9%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 L G+ EE+ L G P R QI+KW+ R +R+ M+D+ Q +R L + Sbjct: 34 DLRGLFPEEIAALLTPWGQPT----FRGKQIFKWLQNRAVREVAEMTDLPQALRVRLGEA 89 Query: 68 --FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-----EKSRGTLCVSS 120 + PE +++ DGT K+L R + IE+V +P + R T+C+S+ Sbjct: 90 GWLKPLAPE--RHRVARDGTEKYLWRLADGEL-----IESVLMPYRRAQTRDRVTVCLST 142 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPSVGRKI 179 Q GC L+C FC TG Q RNLTA EI+ QVL + D P K+ Sbjct: 143 QAGCPLSCRFCATGRQGFRRNLTAAEIVGQVLDITHEKRKDDPDF-------------KV 189 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238 +N+V MGMGEP N+DNV++++ + + G + +RRIT+ST+G VP I R +E V Sbjct: 190 TNLVFMGMGEPFLNYDNVRRAIGLFTHPEGQAIGQRRITVSTAGIVPGIDRFADEDWEVN 249 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLHA + R+ +P+N ++PL +++ACR Y RR++ EY ++ G+ND D Sbjct: 250 LALSLHAADDKQRSEWMPVNDRFPLAQVLEACRRY-WEKTRRRLSVEYALMAGVNDRLED 308 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L + KG P +NLIP N G +++ F ++R G + IR RG DI Sbjct: 309 ARRLASLFKGWPIHLNLIPVNAVAGIGVRRPEREPTERFLAELRRWGVDAVIREERGQDI 368 Query: 359 LAACGQLKSLSK 370 AACGQL+ +K Sbjct: 369 EAACGQLRGAAK 380 >gi|315221970|ref|ZP_07863881.1| radical SAM enzyme, Cfr family [Streptococcus anginosus F0211] gi|315188936|gb|EFU22640.1| radical SAM enzyme, Cfr family [Streptococcus anginosus F0211] Length = 367 Score = 220 bits (561), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 128/346 (36%), Positives = 200/346 (57%), Gaps = 26/346 (7%) Query: 28 QRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI--IYPEIVDEKISCDGT 85 Q + R +QIW+W+Y + ++ F M++IS+ + L F + + +V E S DGT Sbjct: 27 QGEKKFRATQIWEWLYRKRVQSFTEMTNISKGLLAKLEDEFVVNPLKQRVVQE--SADGT 84 Query: 86 RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAE 145 K+L P + IETV + + ++CV++QVGC++ C+FC +G K R+L Sbjct: 85 VKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCNIGCTFCASGLIKKQRDLNNG 139 Query: 146 EILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS 205 EI+ Q++L + D G G ++S+IV+MG+GEP N+DNV K + + Sbjct: 140 EIMSQIMLVQKYF-------DERGQ-----GERVSHIVVMGIGEPFDNYDNVLKFVRTVN 187 Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLE 264 D GL+ R IT+STSG I E + V LA+SLHA +N+LR+ ++ INR +P+E Sbjct: 188 DDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNELRSSIMKINRAFPIE 247 Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWP 322 L A +Y +N RR+TFEY+ML +ND AL L ++LK I + +NLIP+NP Sbjct: 248 KLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALELAELLKNIKKLSYVNLIPYNPVS 306 Query: 323 GC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 +Y S ++ ++ F + +K++G + +R G DI AACGQL+S Sbjct: 307 EHDQYSRSPKERVMAFYDTLKKNGINCVVRQEHGTDIDAACGQLRS 352 >gi|306825018|ref|ZP_07458361.1| cfr family radical SAM enzyme [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432845|gb|EFM35818.1| cfr family radical SAM enzyme [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 361 Score = 220 bits (561), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 130/368 (35%), Positives = 214/368 (58%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+ ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+ + LN Sbjct: 2 KPSIYSLTRQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKGLIAKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 EQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI+ Q++L + D G ++ ++S+IV Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N++NV + +D G++ R IT+STSG I E + V LA+S Sbjct: 159 VMGIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ INR +P+E L A +Y +N RR+TFEY+ML +ND AL L Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++LK I + +NLIP+NP +Y S ++ ++ F + +K++G + +R G DI Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPRERVMAFYDTLKKNGINCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|251797737|ref|YP_003012468.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus sp. JDR-2] gi|247545363|gb|ACT02382.1| radical SAM enzyme, Cfr family [Paenibacillus sp. JDR-2] Length = 348 Score = 220 bits (561), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 123/354 (34%), Positives = 202/354 (57%), Gaps = 25/354 (7%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 ++L++ + + G P R Q++ W+YV+ ++ F+ MS++ + +R L + F + Sbjct: 11 DQLQDWMKENGEPA----FRGGQLFDWLYVKRVKSFEEMSNLPKPLREKLEESFQFVTLS 66 Query: 75 IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134 + + S DGT K+L + IETV + + ++CV++QVGC + C+FC + Sbjct: 67 EITKFESKDGTVKFLF-----GLHDNHAIETVIMRHEYGNSICVTTQVGCRIGCTFCAST 121 Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194 L RNLTA EI+ QV+ A+ +L + G ++S+IV+MG GEP N+ Sbjct: 122 LGGLKRNLTAGEIVAQVVTAQQML--------------DATGERVSSIVIMGSGEPFENY 167 Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNI 253 D L I GL+ +R IT+STSG VP++ + EE + LAIS+HA ++ LR+ Sbjct: 168 DATMTFLRIMIHEKGLNIGQRHITVSTSGIVPSMYKFTEENTQINLAISIHAPNDKLRSK 227 Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313 L+P+NR++P E ++ ACR++ RRITFEY ++ G+ND A L +L+G+ + Sbjct: 228 LMPVNRRFPFEDVMAACRNHIA-KTGRRITFEYALIGGVNDQAEHAQELADVLQGMLCHV 286 Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 NLIP N P Y+ + + DI F ++++ + IR +G DI AACGQL++ Sbjct: 287 NLIPVNHVPERNYVRTPRNDIFEFQRILEKNKINCTIRREQGHDIAAACGQLRA 340 >gi|30021952|ref|NP_833583.1| radical SAM protein [Bacillus cereus ATCC 14579] gi|206971090|ref|ZP_03232041.1| conserved hypothetical protein TIGR00048 [Bacillus cereus AH1134] gi|228960080|ref|ZP_04121744.1| Ribosomal RNA large subunit methyltransferase N [Bacillus thuringiensis serovar pakistani str. T13001] gi|229047551|ref|ZP_04193141.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus AH676] gi|229111335|ref|ZP_04240888.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus Rock1-15] gi|229129140|ref|ZP_04258113.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus BDRD-Cer4] gi|229146435|ref|ZP_04274806.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus BDRD-ST24] gi|81580507|sp|Q819U3|RLMN_BACCR RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|29897508|gb|AAP10784.1| Radical SAM family enzyme [Bacillus cereus ATCC 14579] gi|206733862|gb|EDZ51033.1| conserved hypothetical protein TIGR00048 [Bacillus cereus AH1134] gi|228637068|gb|EEK93527.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus BDRD-ST24] gi|228654377|gb|EEL10242.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus BDRD-Cer4] gi|228672111|gb|EEL27402.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus Rock1-15] gi|228723798|gb|EEL75153.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus AH676] gi|228799596|gb|EEM46549.1| Ribosomal RNA large subunit methyltransferase N [Bacillus thuringiensis serovar pakistani str. T13001] Length = 362 Score = 220 bits (561), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 127/368 (34%), Positives = 209/368 (56%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++S+ +R L Sbjct: 15 KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I + + ++ S DGT K+L + + IETV + + ++CV++QVGC Sbjct: 71 SNSFDITTLKTLVKQTSSDGTIKFLFQ-----LYDGYSIETVLMRHEYGNSICVTTQVGC 125 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+DN+ L I + GL R +T+STSG +P I + EE + + AISL Sbjct: 172 MGIGEPFDNYDNLMGFLRIINHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++LR+ L+PINR Y L L++A ++Y + RRITFEY + G ND A L Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 351 QLRAKERK 358 >gi|56962424|ref|YP_174150.1| hypothetical protein ABC0650 [Bacillus clausii KSM-K16] gi|81601050|sp|Q5WKB6|RLMN_BACSK RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|56908662|dbj|BAD63189.1| conserved hypothetical protein [Bacillus clausii KSM-K16] Length = 356 Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 130/375 (34%), Positives = 218/375 (58%), Gaps = 32/375 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + KES+ G+ +L + L++ G H + R +Q+W W+Y + + F M++++++ L Sbjct: 1 MSKESIYGLTMAQLTDWLMERG----HKKFRATQVWDWLYRKRVTTFAEMTNVNKDCLQL 56 Query: 64 LNQHFSIIYPEIVDEKI---SCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 L HF+I E + E + S DGT K+L R + IETV + K ++CV++ Sbjct: 57 LEDHFAI---ETMSEHVRQESKDGTIKFLFRLQDGNL-----IETVLMRHKYGFSVCVTT 108 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC++ CSFC +G R+L++ EI+ Q++ + L D G E+ ++S Sbjct: 109 QVGCNIGCSFCASGLLTKNRDLSSGEIVEQIMKVQFHL-DQVGKEE-----------RVS 156 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVML 239 ++V+MG+GEP NF N L I D GL+ R IT+STSG I + ++ V L Sbjct: 157 HVVVMGIGEPFDNFQNTVDFLEIIKDHKGLAIGARHITVSTSGLAHKIYEFADLKLQVNL 216 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA +N+LR+ ++ IN+ +P+E L+D+ +Y +N RR+T+EY+++K +ND +A Sbjct: 217 AVSLHAPNNELRSRIMKINKAFPIEKLMDSINYYIEKTN-RRVTYEYILIKDVNDHKEEA 275 Query: 300 LNLIKIL--KGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L L +++ K + +NLIP+NP +Y S+ + I F + +K+ G + +R G Sbjct: 276 LQLAELIGDKRHLSYVNLIPYNPVDEHSQYQRSEPEAISQFFDTLKKKGINCGVRLEHGT 335 Query: 357 DILAACGQLKSLSKR 371 DI AACGQL+S ++ Sbjct: 336 DIDAACGQLRSKQEK 350 >gi|317151954|ref|YP_004120002.1| radical SAM enzyme, Cfr family [Desulfovibrio aespoeensis Aspo-2] gi|316942205|gb|ADU61256.1| radical SAM enzyme, Cfr family [Desulfovibrio aespoeensis Aspo-2] Length = 344 Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 132/336 (39%), Positives = 188/336 (55%), Gaps = 19/336 (5%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R R QIW+W++ + +R +GM+++S+ +R L I +PE+ + S DGT K+LLR Sbjct: 24 RFRAEQIWQWLWQKRVRGVEGMTNLSKPLREKLAAMAVITWPEVARVQQSEDGTIKFLLR 83 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 +G +ETV IP + R + C+S+QVGC++ C+FC TG RN+T EIL QV Sbjct: 84 -----LGDGKLVETVLIPMQDRYSQCLSTQVGCAMGCTFCSTGQLGFERNMTYGEILGQV 138 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 L+ R L D GM + N+V MGMGEPL N D + K L+ GLS Sbjct: 139 LVGRQYLED-------RGM------NPLKNLVFMGMGEPLLNLDTLLKVLNDLPCERGLS 185 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S RR +ST GF + +GE + AISLHA + +LR ++P + L+ L+ A R Sbjct: 186 LSWRRSMVSTVGFPEQLRILGEMEVALPAISLHAPTQELRARIMPKAARVHLDDLMAALR 245 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 YP + RITFEY++LKG+NDS A L +++ KINLI +N G Y D+ Sbjct: 246 AYP-MRPRERITFEYLLLKGVNDSLEHADQLARLIDRKKGKINLIAYNATEGLPYEAPDR 304 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 + F + + G ++ IR G DI AACGQLK+ Sbjct: 305 AQVEAFEKRLWDHGLTAFIRRSMGADIKAACGQLKA 340 >gi|218899017|ref|YP_002447428.1| hypothetical protein BCG9842_B1280 [Bacillus cereus G9842] gi|228902368|ref|ZP_04066524.1| Radical SAM family enzyme [Bacillus thuringiensis IBL 4222] gi|228966814|ref|ZP_04127858.1| Radical SAM family enzyme [Bacillus thuringiensis serovar sotto str. T04001] gi|254807152|sp|B7IUM3|RLMN_BACC2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|218543794|gb|ACK96188.1| conserved hypothetical protein TIGR00048 [Bacillus cereus G9842] gi|228792913|gb|EEM40471.1| Radical SAM family enzyme [Bacillus thuringiensis serovar sotto str. T04001] gi|228857266|gb|EEN01770.1| Radical SAM family enzyme [Bacillus thuringiensis IBL 4222] Length = 362 Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 127/368 (34%), Positives = 208/368 (56%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++S+ +R L Sbjct: 15 KKPSIYSLQIHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I + ++ S DGT K+L + + IETV + + ++CV++QVGC Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQ-----LYDGYSIETVLMRHEYGNSICVTTQVGC 125 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+DN+ L I + GL R +T+STSG +P I + EE + + AISL Sbjct: 172 MGIGEPFDNYDNLMGFLRITNHEKGLHIGARHMTVSTSGIIPKIYKFAEEELQINFAISL 231 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++LR+ L+PINR Y L L++A ++Y + RRITFEY + G ND A L Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 351 QLRAKERK 358 >gi|242277580|ref|YP_002989709.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio salexigens DSM 2638] gi|242120474|gb|ACS78170.1| radical SAM enzyme, Cfr family [Desulfovibrio salexigens DSM 2638] Length = 351 Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 125/336 (37%), Positives = 191/336 (56%), Gaps = 19/336 (5%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R RT QIW+W++ +G+ DF M+++++ +R L I +P++ + S DGT K LLR Sbjct: 30 RFRTDQIWQWLWQKGVEDFDSMTNLAKNLRDELKAKAVINHPQVDVVQTSKDGTIKLLLR 89 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 + +ETV IP + R T C+S+QVGC++ C+FC TG RN++ E+L QV Sbjct: 90 LKDGAL-----VETVLIPMEGRYTQCLSTQVGCAMACTFCNTGLMGFERNMSMSEMLGQV 144 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 L R L E + P + N+V MGMGEPL N DN+ ++L ++ GLS Sbjct: 145 LAGRKYLR--------ENNLDP-----LKNLVFMGMGEPLLNLDNLIRTLRNLNNQDGLS 191 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 F RRIT+S+ GFV + +G+ + AISLHA + +LR ++P K +E L+ A Sbjct: 192 FVPRRITVSSVGFVKQLEELGKTGLTLPAISLHAPTQELREKIMPKAAKTHIEDLLAAMD 251 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 +P L ++T+EY++L G+NDS A L+K+L K+NLI +NP Y + Sbjct: 252 RFP-LKPREKVTYEYLLLGGVNDSIEHAKQLVKLLGHRRCKVNLIAYNPGDEPLYKAPTR 310 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 + ++ F + + ++ IR G DI AACGQLK+ Sbjct: 311 EKVLAFEKYLWDKKITATIRRSMGQDIKAACGQLKA 346 >gi|332522196|ref|ZP_08398448.1| 23S rRNA m2A2503 methyltransferase [Streptococcus porcinus str. Jelinkova 176] gi|332313460|gb|EGJ26445.1| 23S rRNA m2A2503 methyltransferase [Streptococcus porcinus str. Jelinkova 176] Length = 360 Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 133/368 (36%), Positives = 206/368 (55%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+EL + I R R +QIW W+Y + ++ F+ M++IS++ LLN Sbjct: 2 KPSIYSLTRDEL----IDWAIANGQKRFRATQIWDWLYKKRVQSFEEMTNISKDFISLLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 EQFCLNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L + EI Q++L + D G ++ ++S++V Sbjct: 111 CNIGCTFCASGLIKKQRDLNSGEITAQIMLVQKYF-DERGQDE-----------RVSHVV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+ NV L +D GL+ R IT+STSG I E + V LA+S Sbjct: 159 VMGIGEPFDNYKNVMTFLRTINDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ INR +PLE L A +Y +N RR+TFEY+ML +ND A L Sbjct: 219 LHAPNNELRSSIMRINRSFPLEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQAKEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 + K I + +NLIP+NP +Y S + + F + +K++G + +R G DI Sbjct: 278 AALTKNIRKLSYVNLIPYNPVSEHDQYSRSPKARVEAFYDVLKKNGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|296127640|ref|YP_003634892.1| radical SAM enzyme, Cfr family [Brachyspira murdochii DSM 12563] gi|296019456|gb|ADG72693.1| radical SAM enzyme, Cfr family [Brachyspira murdochii DSM 12563] Length = 342 Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 135/365 (36%), Positives = 209/365 (57%), Gaps = 34/365 (9%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S++ + E+L + + P+ H SQ+ WIY + F+ MS+I + +R LL Sbjct: 3 KKISIMNVSEEDLSKFCEENNFPKFH----ASQVLDWIYKKYAVSFEDMSNIPKNLRALL 58 Query: 65 NQHFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 ++++ I +I E IS D GT+K L+ + +IE+V + +K R T C+SSQV Sbjct: 59 DENYFIHNSKI--ETISEDEYGTKKLLISLYDK-----KKIESVILQKKDRVTFCLSSQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC C+FC TG+ L RNLTA+EIL + +L R +V +K+++I Sbjct: 112 GCGYGCAFCATGSMGLSRNLTADEILAEFILMR------------------AVTKKVNSI 153 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241 V MGMGEPL N N+ K++ + G + R IT+STSG V I ++ E ++ LA+ Sbjct: 154 VFMGMGEPLANTKNLFKAIETINSFKGFNLGIRHITISTSGEVVGIKQLIEKDLDCRLAV 213 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH++ N++R+ ++PIN++YP+E L+ + Y + R ITFE+V++K +NDS DA Sbjct: 214 SLHSLKNEVRDKIMPINKRYPIENLMAVLKRYSK-NGKRMITFEWVLIKDVNDSVNDAYR 272 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVT-FSECIKRSGYSSPIRTPRGLDILA 360 L+ + K P K+N+IP NP +L KDI+ F +K +G R +G +ILA Sbjct: 273 LVNLKKEFPFKVNVIPMNPVEHAPHLQRPNKDIILRFKSILKDNGIEVVERFKQGQEILA 332 Query: 361 ACGQL 365 CGQL Sbjct: 333 GCGQL 337 >gi|300871714|ref|YP_003786587.1| putative Fe-S cluster redox enzyme [Brachyspira pilosicoli 95/1000] gi|300689415|gb|ADK32086.1| predicted Fe-S cluster redox enzyme [Brachyspira pilosicoli 95/1000] Length = 342 Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 136/365 (37%), Positives = 209/365 (57%), Gaps = 34/365 (9%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S++ + E+L + ++ P+ H SQI WIY + F MS+I +++R LL Sbjct: 3 KKISIMNVSEEDLSKFCIENNFPKFH----ASQILNWIYKKYAISFDEMSNIPKDLRVLL 58 Query: 65 NQHFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 ++++ I +I E I+ D GTRK L+ + +IE+V + + R T C+SSQV Sbjct: 59 DENYFIHNSKI--ESITEDEYGTRKLLISLYDK-----KKIESVILGKNDRVTFCLSSQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC C+FC TG+ L RNLTA+EIL + +L R +V +K+++I Sbjct: 112 GCGYGCAFCATGSMGLSRNLTADEILAEFILMR------------------AVTKKVNSI 153 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241 V MGMGEPL N N+ K++ + G + R IT+STSG V I ++ E ++ LA+ Sbjct: 154 VFMGMGEPLANTKNLFKAIDTINSYKGFNLGIRHITISTSGEVAGIKQLIERDLDCRLAV 213 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH++ N++R+ ++PIN++YP+E LI+ + Y + R ITFE+V++K +NDS DA Sbjct: 214 SLHSLKNEVRDKIMPINKRYPIENLINILKRYSK-NGKRMITFEWVLIKDVNDSVNDAYR 272 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVT-FSECIKRSGYSSPIRTPRGLDILA 360 L+ + K P K+N+IP NP L KDI+ F +K +G R +G +ILA Sbjct: 273 LVNLKKEFPFKVNIIPMNPVEHAPELQRPNKDIILRFKSILKDNGIEVVERFKQGQEILA 332 Query: 361 ACGQL 365 CGQL Sbjct: 333 GCGQL 337 >gi|228909689|ref|ZP_04073512.1| Radical SAM family enzyme [Bacillus thuringiensis IBL 200] gi|228849978|gb|EEM94809.1| Radical SAM family enzyme [Bacillus thuringiensis IBL 200] Length = 362 Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 127/368 (34%), Positives = 208/368 (56%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++S+ +R L Sbjct: 15 KKPSIYSLQIHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I + ++ S DGT K+L + + IETV + + ++CV++QVGC Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQ-----LYDGYSIETVLMRHEYGNSICVTTQVGC 125 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+DN+ L I + GL R +T+STSG +P I + EE + + AISL Sbjct: 172 MGIGEPFDNYDNLMGFLRITNHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++LR+ L+PINR Y L L++A ++Y + RRITFEY + G ND A L Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 351 QLRAKERK 358 >gi|152976230|ref|YP_001375747.1| radical SAM protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|205829663|sp|A7GRJ4|RLMN_BACCN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|152024982|gb|ABS22752.1| radical SAM enzyme, Cfr family [Bacillus cytotoxicus NVH 391-98] Length = 362 Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 124/368 (33%), Positives = 209/368 (56%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S+ + E++E L + G P + R QI+ W+Y + +++++ M+++S+ +R L Sbjct: 15 KKPSIYSLQLHEMQEWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMTNLSKGLREKL 70 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I + ++ S DGT K+L + + IETV + + ++CV++QVGC Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQ-----LYDGYSIETVLMRHEYGNSICVTTQVGC 125 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TNERVSSLVV 171 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+D++ L I + G++ R +T+STSG +P I + EE + + AISL Sbjct: 172 MGIGEPFDNYDHLMSFLRIVNHEKGINIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA + +LR+ L+PINR Y L L++A ++Y + RR+TFEY + G ND A L Sbjct: 232 HAPNTELRSKLMPINRAYKLPDLMEAIKYYINRT-GRRVTFEYGLFGGENDQVEHAEELA 290 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG Sbjct: 291 QLLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKNRGVNVTIRREQGHDIDAACG 350 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 351 QLRAKERK 358 >gi|165872311|ref|ZP_02216948.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str. A0488] gi|227813228|ref|YP_002813237.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str. CDC 684] gi|254751039|ref|ZP_05203078.1| hypothetical protein BantV_01167 [Bacillus anthracis str. Vollum] gi|254807150|sp|C3L763|RLMN_BACAC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|164711987|gb|EDR17527.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str. A0488] gi|227006974|gb|ACP16717.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str. CDC 684] Length = 362 Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 127/368 (34%), Positives = 208/368 (56%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++S+ +R L Sbjct: 15 KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLREKL 70 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I + ++ S DGT K+L + + IETV + + ++CV++QVGC Sbjct: 71 SNSFDITTLHTLVKQTSSDGTIKFLFQ-----LYDGYSIETVLMRHEYGNSICVTTQVGC 125 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDESE--------------ERVSSLVV 171 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+DN+ L I + GL R +T+STSG +P I + EE + + AISL Sbjct: 172 MGIGEPFDNYDNLMGFLRIINHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++LR+ L+PINR Y L L++A ++Y + RRITFEY + G ND A L Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 351 QLRAKERK 358 >gi|158320465|ref|YP_001512972.1| radical SAM protein [Alkaliphilus oremlandii OhILAs] gi|205829712|sp|A8MH89|RLMN_ALKOO RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|158140664|gb|ABW18976.1| radical SAM enzyme, Cfr family [Alkaliphilus oremlandii OhILAs] Length = 343 Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 135/365 (36%), Positives = 202/365 (55%), Gaps = 30/365 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K L+ + +E+EE L +G + R QI++W+ +G++ F M+++S+ +R Sbjct: 1 MEKIDLLSLTLKEIEEILTNMG----EKKFRGKQIFQWVN-KGVKTFDEMTNLSKNLRDQ 55 Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L + I +I + IS DGT K+L I IE V + T C+S+QV Sbjct: 56 LAERTYITNIKIEKKLISSIDGTIKYLFLLEDCNI-----IEGVVMKYHHGLTACISTQV 110 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC++ C+FC + LVRNL A E++ Q+L + G +ISNI Sbjct: 111 GCAMGCTFCASTLDGLVRNLRAGEMIDQILTMQE-----------------DTGERISNI 153 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241 V+MG GEPL N+D L I +D GL+ R ITLSTSG VP I + + +I + LAI Sbjct: 154 VLMGSGEPLHNYDETINFLKIINDENGLNIGNRHITLSTSGLVPQIKTLADLKIPINLAI 213 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA +++LR +P+ +KY ++ LID+CR+Y RRITFEY ++KG+ND +DA Sbjct: 214 SLHAPNDELRQQTMPVAKKYAIDELIDSCRYYIE-KTGRRITFEYALIKGVNDRDKDARE 272 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L +LKG+ +NLIP N Y + I F +K++G + +R G DI AA Sbjct: 273 LGDLLKGMLCHVNLIPVNNVDERGYKKPSIESIHQFQNTLKKAGIETTVRREMGADINAA 332 Query: 362 CGQLK 366 CGQL+ Sbjct: 333 CGQLR 337 >gi|49481621|ref|YP_037925.1| ribosomal RNA large subunit methyltransferase N [Bacillus thuringiensis serovar konkukian str. 97-27] gi|81395090|sp|Q6HEV1|RLMN_BACHK RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|49333177|gb|AAT63823.1| conserved hypothetical protein, radical SAM family [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 362 Score = 220 bits (560), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 127/368 (34%), Positives = 208/368 (56%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++S+ +R L Sbjct: 15 KKTSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLREKL 70 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I + ++ S DGT K+L + + IETV + + ++CV++QVGC Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQ-----LYDGYSIETVLMRHEYGNSICVTTQVGC 125 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDESE--------------ERVSSLVV 171 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+DN+ L I + GL R +T+STSG +P I + EE + + AISL Sbjct: 172 MGIGEPFDNYDNLMGFLRIINHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++LR+ L+PINR Y L L++A ++Y + RRITFEY + G ND A L Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 351 QLRAKERK 358 >gi|196228869|ref|ZP_03127735.1| radical SAM enzyme, Cfr family [Chthoniobacter flavus Ellin428] gi|196227150|gb|EDY21654.1| radical SAM enzyme, Cfr family [Chthoniobacter flavus Ellin428] Length = 359 Score = 220 bits (560), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 129/361 (35%), Positives = 193/361 (53%), Gaps = 36/361 (9%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 +E+ E L +G P R Q+ +WIY + ++ F MSD+ +R L S E Sbjct: 16 DEVSERLRTLGQPG----YRAKQVVQWIYGKRVKSFAEMSDLPAGLRQQLAAELSFSGLE 71 Query: 75 IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK--------SRGTLCVSSQVGCSL 126 V S D T K+L R + IE+V IP R T+C+S+QVGC+ Sbjct: 72 PVRTLGSKDTTLKYLFRLDDGAL-----IESVLIPASPALYGEASDRRTICISTQVGCAY 126 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC +G RNL EI+ QVL L G+ KI+NIV MG Sbjct: 127 GCKFCASGLDGWSRNLQPGEIVDQVLRVEELSGE-----------------KINNIVFMG 169 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 MGEP+ NF N+ K+++I + G+ R IT+STSG P I + ++ + V LAISLH Sbjct: 170 MGEPMANFTNLMKAITIINAPWGIGLGARHITISTSGLAPQIKLLADQPLQVRLAISLHG 229 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +N++R ++P+NRKYPLE+L++AC +Y + +TFEY++++ +ND P DA L+K+ Sbjct: 230 ATNEVREQIMPVNRKYPLEVLLEACAYYTQ-RKKQWLTFEYILIEEVNDRPEDAAALVKV 288 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + + AK+N IP+N G ++ + F ++ + IR +G DI AACGQL Sbjct: 289 ARQVKAKVNCIPYNKVEGLDWTRPSEARQDAFMAVLEAGRIPATIRREKGHDIAAACGQL 348 Query: 366 K 366 + Sbjct: 349 R 349 >gi|305664559|ref|YP_003860846.1| radical SAM enzyme, Cfr family protein [Maribacter sp. HTCC2170] gi|88708576|gb|EAR00812.1| radical SAM enzyme, Cfr family protein [Maribacter sp. HTCC2170] Length = 348 Score = 220 bits (560), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 132/368 (35%), Positives = 207/368 (56%), Gaps = 26/368 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +KK+ + + ++L E + G R +Q+++W++ + F+ M++IS+E R L Sbjct: 5 IKKKDIRALTLDQLREFFVANGDKA----FRGNQVYEWLWKKSAYSFEVMTNISKETRTL 60 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +F I + ++ + S DGT K +R + +E+V IP K+R T CVSSQVG Sbjct: 61 LTSNFVINHIKVDQMQRSKDGTIKNAVRLHDDLV-----VESVLIPTKTRTTACVSSQVG 115 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 CSL C FC T K +RNL +EI QV+ I+ R +SNIV Sbjct: 116 CSLDCKFCATARLKRMRNLNPDEIFDQVVA-------------IDNESRLYFNRPLSNIV 162 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAI 241 MGMGEPL N++NV K++ + GL S +RIT+STSG VP + R E++ LA+ Sbjct: 163 FMGMGEPLMNYNNVLKAIDKITSPDGLGMSPKRITVSTSG-VPKMIRKMADEQVKFKLAV 221 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH+ +++R ++P N L L +A +++ + +R IT+EYV+ KGIND+ DA Sbjct: 222 SLHSAIDEIRTSIMPFNATLTLADLREALQYWYSKTKSR-ITYEYVVWKGINDTLNDAEA 280 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L+ + P+K+NLI +NP ++ ++ K I + + ++R G + +R RG DI AA Sbjct: 281 LVDFCRFAPSKVNLIEYNPIDDGDFQQANNKAIDMYVDTLERRGITVTVRRSRGKDIDAA 340 Query: 362 CGQLKSLS 369 CGQL + S Sbjct: 341 CGQLANKS 348 >gi|229134672|ref|ZP_04263481.1| Radical SAM family enzyme [Bacillus cereus BDRD-ST196] gi|228648718|gb|EEL04744.1| Radical SAM family enzyme [Bacillus cereus BDRD-ST196] Length = 362 Score = 220 bits (560), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 125/368 (33%), Positives = 207/368 (56%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++++ +R L Sbjct: 15 KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLAKGLRDKL 70 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I + ++ S DGT K+L + + IETV + + ++CV++QVGC Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQ-----LYDGYSIETVLMRHEYGNSICVTTQVGC 125 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+DN+ L I + G+ R +T+STSG VP I + EE + + AISL Sbjct: 172 MGIGEPFDNYDNLMSFLRIVNHEKGIHIGARHMTVSTSGIVPKIYKFAEEDMQINFAISL 231 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA + ++R+ L+PINR Y L L++A ++Y + RRITFEY + G ND A L Sbjct: 232 HAANTEIRSKLMPINRAYKLPDLMEAVKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 351 QLRAKERK 358 >gi|188590485|ref|YP_001920564.1| radical SAM enzyme, Cfr family [Clostridium botulinum E3 str. Alaska E43] gi|251777897|ref|ZP_04820817.1| radical SAM enzyme, Cfr family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|205829736|sp|B2V4B5|RLMN_CLOBA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|188500766|gb|ACD53902.1| radical SAM enzyme, Cfr family [Clostridium botulinum E3 str. Alaska E43] gi|243082212|gb|EES48102.1| radical SAM enzyme, Cfr family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 347 Score = 220 bits (560), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 125/336 (37%), Positives = 191/336 (56%), Gaps = 26/336 (7%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD-EKISCDGTRKWLLR 91 R QI WIY + +R+F M ++ + + L ++F I PEI + K DGT K+L + Sbjct: 24 FRAKQIMSWIY-KDVRNFSDMRNMPKSLIAKLEENFEISLPEIEEIYKSELDGTEKFLFK 82 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 F + IE+V + K ++C+S+Q+GC + C FC + +RNLT EIL Q+ Sbjct: 83 FSDGNL-----IESVLMRYKHGNSICISTQIGCRMGCKFCASTIDGRIRNLTTGEILSQI 137 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 L+ ++ +G+ +ISN+V+MG GEPL N++NV K L + S GL+ Sbjct: 138 LVVQNYIGE-----------------RISNVVLMGSGEPLDNYENVMKFLEVVSAEYGLN 180 Query: 212 FSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 +R ITLST G VP I + + E+ + LAISLHA S++ R ++PI KY ++ +++AC Sbjct: 181 IGQRHITLSTCGIVPKIYELADKELSITLAISLHAFSDEKRKEIMPIANKYSIDEILNAC 240 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 +++ RRITFEY ++K +NDS DA L K+LKG+ +NLIP N + S Sbjct: 241 KYFIN-KTKRRITFEYSLVKDVNDSKEDARALGKLLKGMLCHVNLIPVNEIKERTFKRSS 299 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 ++ I F+ + G +R G DI AACGQL+ Sbjct: 300 KETIQDFANILSNLGIEVTVRREMGSDINAACGQLR 335 >gi|163941602|ref|YP_001646486.1| radical SAM protein [Bacillus weihenstephanensis KBAB4] gi|229013048|ref|ZP_04170213.1| Radical SAM family enzyme [Bacillus mycoides DSM 2048] gi|229061467|ref|ZP_04198812.1| Radical SAM family enzyme [Bacillus cereus AH603] gi|229168604|ref|ZP_04296327.1| Radical SAM family enzyme [Bacillus cereus AH621] gi|205829666|sp|A9VTA2|RLMN_BACWK RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|163863799|gb|ABY44858.1| radical SAM enzyme, Cfr family [Bacillus weihenstephanensis KBAB4] gi|228615010|gb|EEK72112.1| Radical SAM family enzyme [Bacillus cereus AH621] gi|228717890|gb|EEL69538.1| Radical SAM family enzyme [Bacillus cereus AH603] gi|228748302|gb|EEL98162.1| Radical SAM family enzyme [Bacillus mycoides DSM 2048] Length = 362 Score = 220 bits (560), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 125/368 (33%), Positives = 207/368 (56%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++++ +R L Sbjct: 15 KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLAKGLRDKL 70 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I + ++ S DGT K+L + + IETV + + ++CV++QVGC Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQ-----LYDGYSIETVLMRHEYGNSICVTTQVGC 125 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+DN+ L I + G+ R +T+STSG VP I + EE + + AISL Sbjct: 172 MGIGEPFDNYDNLMSFLRIVNHEKGIHIGARHMTVSTSGIVPKIYKFAEEDMQINFAISL 231 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA + ++R+ L+PINR Y L L++A ++Y + RRITFEY + G ND A L Sbjct: 232 HAANTEIRSKLMPINRAYKLPDLMEAVKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 351 QLRAKERK 358 >gi|228922618|ref|ZP_04085918.1| Ribosomal RNA large subunit methyltransferase N [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228954141|ref|ZP_04116169.1| Radical SAM family enzyme [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229071362|ref|ZP_04204585.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus F65185] gi|229081119|ref|ZP_04213629.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus Rock4-2] gi|229180140|ref|ZP_04307484.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus 172560W] gi|229192033|ref|ZP_04319003.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus ATCC 10876] gi|228591584|gb|EEK49433.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus ATCC 10876] gi|228603349|gb|EEK60826.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus 172560W] gi|228702163|gb|EEL54639.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus Rock4-2] gi|228711816|gb|EEL63768.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus F65185] gi|228805461|gb|EEM52052.1| Radical SAM family enzyme [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228837047|gb|EEM82388.1| Ribosomal RNA large subunit methyltransferase N [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 362 Score = 220 bits (560), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 127/368 (34%), Positives = 208/368 (56%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++S+ +R L Sbjct: 15 KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I + ++ S DGT K+L + + IETV + + ++CV++QVGC Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQ-----LYDGYSIETVLMRHEYGNSICVTTQVGC 125 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+DN+ L I + GL R +T+STSG +P I + EE + + AISL Sbjct: 172 MGIGEPFDNYDNLMGFLRIINHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++LR+ L+PINR Y L L++A ++Y + RRITFEY + G ND A L Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 351 QLRAKERK 358 >gi|332886413|gb|EGK06657.1| ribosomal RNA large subunit methyltransferase N [Dysgonomonas mossii DSM 22836] Length = 341 Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 123/370 (33%), Positives = 195/370 (52%), Gaps = 29/370 (7%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 M E+ + + G+P R QI W+Y + I M+++S R LL++ + I Sbjct: 1 MTMEDFYGVVGECGLP----RFSAKQIADWVYKKRITSIDEMTNLSVANRALLSEKYDIG 56 Query: 72 YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131 ++ + S DGT K+L + + IE V IPE R TLCVSSQVGC + C FC Sbjct: 57 RYNPLEFQQSVDGTVKYLFKTEKEKL-----IEAVMIPEDDRATLCVSSQVGCKMNCLFC 111 Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191 TG Q NLTA EIL Q+ R ++N+V MGMGEPL Sbjct: 112 MTGKQGFNGNLTANEILNQLYSVRE-------------------AESLTNVVFMGMGEPL 152 Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLR 251 N++ +KK+L I + G+++S +RIT+ST+G P + R +E LAIS+H+ + R Sbjct: 153 DNYEELKKTLEIMTADYGMAWSPKRITVSTTGVTPKLKRFLDESNAHLAISIHSPEKEQR 212 Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311 ++P + +P+ ++D R Y + RR++FEY+M NDS A L ++L+G+ Sbjct: 213 LSIMPAEKAFPITGVMDLLRQYD-WTKQRRLSFEYIMFDNFNDSLIHAKELTQMLRGVEC 271 Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 ++NLI F+ P + S ++ + F + + + G +S IR RG DI AACG L ++ Sbjct: 272 RVNLIRFHAIPNVDLKTSTKEKMEAFRDYLTKKGVTSTIRASRGEDIFAACGMLSTMKGD 331 Query: 372 IPKVPRQEMQ 381 +++++ Sbjct: 332 ALSASKKDLE 341 >gi|257438998|ref|ZP_05614753.1| radical SAM enzyme, Cfr family [Faecalibacterium prausnitzii A2-165] gi|257198583|gb|EEU96867.1| radical SAM enzyme, Cfr family [Faecalibacterium prausnitzii A2-165] Length = 346 Score = 219 bits (559), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 128/364 (35%), Positives = 202/364 (55%), Gaps = 30/364 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K + + EL AL +G P R QI+ W++ + + +F M+D + + L Sbjct: 3 QKRCISSLTLAELTAALKAMGQPG----FRAKQIFHWVHQKLVTEFSAMTDQPKTLLAKL 58 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFP-ARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + F I P+I + + DGT K+LLR CI ETV + T+CVS+QVG Sbjct: 59 EEQFYIAAPKIERRQEAKDGTVKYLLRMADGNCI------ETVVMRYHYGNTVCVSTQVG 112 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC + VRNL A EI ++ A+ +G +IS+IV Sbjct: 113 CRMGCRFCASTQAGRVRNLEAGEICSEIYTAQK-----------------DIGERISHIV 155 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEPL NFD V + L S G++ R I+LST G VP I ++ E+ + + L++S Sbjct: 156 LMGIGEPLDNFDEVMRFLENISSPEGVNIGMRNISLSTCGLVPKIDQLAEKKLQLTLSVS 215 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N++R+ ++P+N YP+E+L+ A R Y + RR++FEY M++G+NDS A L Sbjct: 216 LHAPNNEIRSGMMPVNDAYPVEVLMPAVRRYQE-TTGRRVSFEYSMVRGVNDSDACARQL 274 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +++G+ A +NLIP NP G Y +D ++ F + ++ G ++ +R G +I AAC Sbjct: 275 ADLIRGMGAHVNLIPINPVDGSPYSATDAANVQRFQKKLESLGVNATVRRRLGSEISAAC 334 Query: 363 GQLK 366 GQL+ Sbjct: 335 GQLR 338 >gi|52080178|ref|YP_078969.1| ribosomal RNA large subunit methyltransferase N [Bacillus licheniformis ATCC 14580] gi|52785555|ref|YP_091384.1| YloN [Bacillus licheniformis ATCC 14580] gi|319646042|ref|ZP_08000272.1| ribosomal RNA large subunit methyltransferase N [Bacillus sp. BT1B_CT2] gi|81385601|sp|Q65JS3|RLMN_BACLD RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|52003389|gb|AAU23331.1| Conserved hypothetical protein [Bacillus licheniformis ATCC 14580] gi|52348057|gb|AAU40691.1| YloN [Bacillus licheniformis ATCC 14580] gi|317391792|gb|EFV72589.1| ribosomal RNA large subunit methyltransferase N [Bacillus sp. BT1B_CT2] Length = 361 Score = 219 bits (559), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 121/340 (35%), Positives = 192/340 (56%), Gaps = 21/340 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R +QI++W+Y + + F+ M+++S+E+R LN+HF + + ++ S DGT K+L Sbjct: 38 FRAAQIFEWLYEKRVTSFEKMTNLSKELRTKLNEHFVLTTLKTAVKQTSQDGTMKFLFE- 96 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + IETV + + ++CV++QVGC + C+FC + L RNL A EI+ QV+ Sbjct: 97 ----LHDGYTIETVLMRHEYGNSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVAQVV 152 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 + L + ++S+IV+MG+GEP NF + L I + GL+ Sbjct: 153 KVQQALDE--------------TDERVSSIVIMGIGEPFDNFQEMLAFLKIVNHDKGLNI 198 Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 R IT+STSG +P I +E + + AISLHA + ++R+ L+PINR Y L L+ A Sbjct: 199 GARHITVSTSGIIPKIYEFADEKLQINFAISLHAPNTEIRSRLMPINRAYKLPDLMKAVD 258 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 +Y RR+TFEY + G+ND A L ++LKGI +NLIP N P +Y+ + + Sbjct: 259 YYIK-KTGRRVTFEYGLFGGVNDQVEHAEELAELLKGIKCHVNLIPVNYVPERDYVRTPK 317 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 + I F + +K G + IR +G DI AACGQL++ ++ Sbjct: 318 EQIFAFEKTLKSHGVNVTIRREQGHDIDAACGQLRAKERQ 357 >gi|212639614|ref|YP_002316134.1| ribosomal RNA large subunit methyltransferase N [Anoxybacillus flavithermus WK1] gi|212561094|gb|ACJ34149.1| Predicted Fe-S-cluster redox enzyme [Anoxybacillus flavithermus WK1] Length = 349 Score = 219 bits (559), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 121/340 (35%), Positives = 192/340 (56%), Gaps = 21/340 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R +QI++W+Y + F+ M++I + +R L +HF I + + ++ S DGT K+L Sbjct: 25 FRATQIFEWLYKKRATSFEDMTNIPKALRERLAEHFVITTLKTLVQQTSKDGTMKFLFE- 83 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + IETV + ++CV++QVGC + C+FC + L RNL A EI+ QV+ Sbjct: 84 ----LHDGYSIETVLMRHDYGNSICVTTQVGCRIGCTFCASTLGGLKRNLQAGEIVAQVV 139 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 + L + ++S+IV+MG+GEP N+D + K L I + GL Sbjct: 140 KVQKALDE--------------TNERVSSIVVMGIGEPFDNYDELIKFLKIVNHPKGLHI 185 Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 R IT+STSG +P I + +E + + AISLHA + +LR+ L+PINR Y L L++A R Sbjct: 186 GARHITVSTSGIIPKIYQFADENMQINFAISLHAPNTELRSKLMPINRAYKLPELMEAVR 245 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 +Y RR+TFEY + G+ND A L +++KG+ +NLIP N P Y+ + + Sbjct: 246 YYIE-KTGRRVTFEYGLFGGVNDQIEHAEELAELIKGLKCHVNLIPVNYVPERNYVRTPR 304 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 + I F + +K+ G + IR +G DI AACGQL++ ++ Sbjct: 305 EQIFAFEKTLKKHGINVTIRREQGHDIDAACGQLRAKERK 344 >gi|283782458|ref|YP_003373213.1| radical SAM enzyme, Cfr family [Pirellula staleyi DSM 6068] gi|283440911|gb|ADB19353.1| radical SAM enzyme, Cfr family [Pirellula staleyi DSM 6068] Length = 391 Score = 219 bits (559), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 140/370 (37%), Positives = 203/370 (54%), Gaps = 31/370 (8%) Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75 EL+ L + G P R +Q+ KW++ G F M+D+ +++R L F++ ++ Sbjct: 45 ELKTWLTERGYPA----YRATQVRKWVFELGASSFDEMTDLPKKLRDELAPEFTLWTGKV 100 Query: 76 VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135 V + S DGT K L+ +P GG IE V + + R ++CVSSQVGC++ C FC +G Sbjct: 101 VTKSESPDGTEKLLVEYPG---GG--RIECVLLRDGDRRSICVSSQVGCAMGCVFCASGL 155 Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195 + RNLTA EI+ Q+LL + LL + ++S+IVMMGMGEPL N D Sbjct: 156 DGVDRNLTAGEIVEQMLLLQRLLPE---------------KERLSHIVMMGMGEPLANID 200 Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNIL 254 +V ++L A+ GL S RRIT+ST G + ++ E LA+SLHA +N+LR L Sbjct: 201 HVLEALGEATREDGLGISPRRITISTVGLPAALDKLCNLEAKYHLAVSLHAPNNELRTRL 260 Query: 255 VPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKIN 314 VPIN+ +E +I++ Y S RR+TFEYV+L G+ND P A L ++L G A +N Sbjct: 261 VPINKAIGIEKVIESADRYFETS-GRRLTFEYVLLAGVNDHPDHAQELAELLAGRTAMLN 319 Query: 315 LIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS-----LS 369 +IP+NP G Y I F + +G + R +G +I AACGQL+ L Sbjct: 320 VIPYNPVAGLPYKTPSGNAIHRFRNILVDAGINVKFRQRKGSEINAACGQLRRSTPTLLG 379 Query: 370 KRIPKVPRQE 379 P P QE Sbjct: 380 IESPAPPSQE 389 >gi|229174530|ref|ZP_04302062.1| Radical SAM family enzyme [Bacillus cereus MM3] gi|228609090|gb|EEK66380.1| Radical SAM family enzyme [Bacillus cereus MM3] Length = 362 Score = 219 bits (559), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 126/368 (34%), Positives = 206/368 (55%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S+ + E+++ L + G P + R QI+ W+Y + ++++ MS++S+ +R L Sbjct: 15 KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYDDMSNLSKGLRDKL 70 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I + ++ S DGT K+L + + IETV + + ++CV++QVGC Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQ-----LYDGYSIETVLMRHEYGNSICVTTQVGC 125 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+DN+ L I + G+ R +T+STSG VP I + EE + + AISL Sbjct: 172 MGIGEPFDNYDNLMSFLRIVNHEKGIHIGARHMTVSTSGIVPKIYKFAEEDMQINFAISL 231 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ + +LR+ L+PINR Y L L++A ++Y + RRITFEY + G ND A L Sbjct: 232 HSANTELRSKLMPINRAYKLPDLMEAVKYYVNRT-GRRITFEYGLFGGENDQVEQAEELA 290 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 351 QLRAKERK 358 >gi|30263867|ref|NP_846244.1| hypothetical protein BA_4002 [Bacillus anthracis str. Ames] gi|42782956|ref|NP_980203.1| hypothetical protein BCE_3906 [Bacillus cereus ATCC 10987] gi|47529293|ref|YP_020642.1| hypothetical protein GBAA_4002 [Bacillus anthracis str. 'Ames Ancestor'] gi|49186714|ref|YP_029966.1| ribosomal RNA large subunit methyltransferase N [Bacillus anthracis str. Sterne] gi|52141624|ref|YP_085205.1| hypothetical protein BCZK3623 [Bacillus cereus E33L] gi|65321191|ref|ZP_00394150.1| COG0820: Predicted Fe-S-cluster redox enzyme [Bacillus anthracis str. A2012] gi|118479086|ref|YP_896237.1| ribosomal RNA large subunit methyltransferase N [Bacillus thuringiensis str. Al Hakam] gi|167636419|ref|ZP_02394718.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str. A0442] gi|167641154|ref|ZP_02399409.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str. A0193] gi|170688817|ref|ZP_02880020.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str. A0465] gi|170708820|ref|ZP_02899256.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str. A0389] gi|190565819|ref|ZP_03018738.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis Tsiankovskii-I] gi|196035941|ref|ZP_03103343.1| conserved hypothetical protein TIGR00048 [Bacillus cereus W] gi|196038756|ref|ZP_03106064.1| conserved hypothetical protein TIGR00048 [Bacillus cereus NVH0597-99] gi|196047439|ref|ZP_03114651.1| conserved hypothetical protein TIGR00048 [Bacillus cereus 03BB108] gi|206976736|ref|ZP_03237640.1| conserved hypothetical protein TIGR00048 [Bacillus cereus H3081.97] gi|217961284|ref|YP_002339852.1| conserved hypothetical protein TIGR00048 [Bacillus cereus AH187] gi|218904994|ref|YP_002452828.1| conserved hypothetical protein TIGR00048 [Bacillus cereus AH820] gi|222097309|ref|YP_002531366.1| ribosomal RNA large subunit methyltransferase n [Bacillus cereus Q1] gi|225865845|ref|YP_002751223.1| conserved hypothetical protein TIGR00048 [Bacillus cereus 03BB102] gi|228916501|ref|ZP_04080067.1| Radical SAM family enzyme [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228928912|ref|ZP_04091944.1| Radical SAM family enzyme [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935178|ref|ZP_04098005.1| Radical SAM family enzyme [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947583|ref|ZP_04109873.1| Radical SAM family enzyme [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228987007|ref|ZP_04147133.1| Radical SAM family enzyme [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229092907|ref|ZP_04224041.1| Radical SAM family enzyme [Bacillus cereus Rock3-42] gi|229123378|ref|ZP_04252582.1| Radical SAM family enzyme [Bacillus cereus 95/8201] gi|229140510|ref|ZP_04269065.1| Radical SAM family enzyme [Bacillus cereus BDRD-ST26] gi|229157440|ref|ZP_04285518.1| Radical SAM family enzyme [Bacillus cereus ATCC 4342] gi|229186104|ref|ZP_04313273.1| Radical SAM family enzyme [Bacillus cereus BGSC 6E1] gi|229197975|ref|ZP_04324689.1| Radical SAM family enzyme [Bacillus cereus m1293] gi|229603263|ref|YP_002868101.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str. A0248] gi|254683427|ref|ZP_05147287.1| hypothetical protein BantC_06200 [Bacillus anthracis str. CNEVA-9066] gi|254721396|ref|ZP_05183185.1| hypothetical protein BantA1_02905 [Bacillus anthracis str. A1055] gi|254735903|ref|ZP_05193609.1| hypothetical protein BantWNA_12161 [Bacillus anthracis str. Western North America USA6153] gi|254739849|ref|ZP_05197542.1| hypothetical protein BantKB_02319 [Bacillus anthracis str. Kruger B] gi|254756704|ref|ZP_05208733.1| hypothetical protein BantA9_00135 [Bacillus anthracis str. Australia 94] gi|301055355|ref|YP_003793566.1| radical SAM enzyme [Bacillus anthracis CI] gi|81409444|sp|Q732K6|RLMN_BACC1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|81686555|sp|Q636G2|RLMN_BACCZ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|81715534|sp|Q81WH4|RLMN_BACAN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829662|sp|A0RHN7|RLMN_BACAH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807149|sp|C3P635|RLMN_BACAA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807151|sp|B7JJV1|RLMN_BACC0 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807153|sp|C1EP88|RLMN_BACC3 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807155|sp|B7HLJ7|RLMN_BACC7 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807156|sp|B9IVF3|RLMN_BACCQ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|30258511|gb|AAP27730.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str. Ames] gi|42738883|gb|AAS42811.1| conserved hypothetical protein TIGR00048 [Bacillus cereus ATCC 10987] gi|47504441|gb|AAT33117.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str. 'Ames Ancestor'] gi|49180641|gb|AAT56017.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str. Sterne] gi|51975093|gb|AAU16643.1| conserved hypothetical protein; radical SAM family [Bacillus cereus E33L] gi|118418311|gb|ABK86730.1| 23S rRNA m(2)A-2503 methyltransferase [Bacillus thuringiensis str. Al Hakam] gi|167510934|gb|EDR86325.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str. A0193] gi|167528161|gb|EDR90948.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str. A0442] gi|170126305|gb|EDS95196.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str. A0389] gi|170667172|gb|EDT17932.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str. A0465] gi|190562738|gb|EDV16704.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis Tsiankovskii-I] gi|195991590|gb|EDX55556.1| conserved hypothetical protein TIGR00048 [Bacillus cereus W] gi|196021747|gb|EDX60442.1| conserved hypothetical protein TIGR00048 [Bacillus cereus 03BB108] gi|196030479|gb|EDX69078.1| conserved hypothetical protein TIGR00048 [Bacillus cereus NVH0597-99] gi|206745046|gb|EDZ56449.1| conserved hypothetical protein TIGR00048 [Bacillus cereus H3081.97] gi|217063048|gb|ACJ77298.1| conserved hypothetical protein TIGR00048 [Bacillus cereus AH187] gi|218536040|gb|ACK88438.1| conserved hypothetical protein TIGR00048 [Bacillus cereus AH820] gi|221241367|gb|ACM14077.1| conserved hypothetical protein [Bacillus cereus Q1] gi|225788055|gb|ACO28272.1| conserved hypothetical protein TIGR00048 [Bacillus cereus 03BB102] gi|228585454|gb|EEK43558.1| Radical SAM family enzyme [Bacillus cereus m1293] gi|228597280|gb|EEK54931.1| Radical SAM family enzyme [Bacillus cereus BGSC 6E1] gi|228626167|gb|EEK82916.1| Radical SAM family enzyme [Bacillus cereus ATCC 4342] gi|228643071|gb|EEK99347.1| Radical SAM family enzyme [Bacillus cereus BDRD-ST26] gi|228660154|gb|EEL15790.1| Radical SAM family enzyme [Bacillus cereus 95/8201] gi|228690529|gb|EEL44312.1| Radical SAM family enzyme [Bacillus cereus Rock3-42] gi|228772785|gb|EEM21225.1| Radical SAM family enzyme [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228812103|gb|EEM58434.1| Radical SAM family enzyme [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824543|gb|EEM70348.1| Radical SAM family enzyme [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830719|gb|EEM76324.1| Radical SAM family enzyme [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843080|gb|EEM88162.1| Radical SAM family enzyme [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229267671|gb|ACQ49308.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str. A0248] gi|300377524|gb|ADK06428.1| radical SAM enzyme [Bacillus cereus biovar anthracis str. CI] gi|324327762|gb|ADY23022.1| ribosomal RNA large subunit methyltransferase N [Bacillus thuringiensis serovar finitimus YBT-020] Length = 362 Score = 219 bits (559), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 127/368 (34%), Positives = 208/368 (56%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++S+ +R L Sbjct: 15 KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLREKL 70 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I + ++ S DGT K+L + + IETV + + ++CV++QVGC Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQ-----LYDGYSIETVLMRHEYGNSICVTTQVGC 125 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDESE--------------ERVSSLVV 171 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+DN+ L I + GL R +T+STSG +P I + EE + + AISL Sbjct: 172 MGIGEPFDNYDNLMGFLRIINHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++LR+ L+PINR Y L L++A ++Y + RRITFEY + G ND A L Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 351 QLRAKERK 358 >gi|296504359|ref|YP_003666059.1| radical SAM protein [Bacillus thuringiensis BMB171] gi|296325411|gb|ADH08339.1| radical SAM protein [Bacillus thuringiensis BMB171] Length = 362 Score = 219 bits (559), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 127/368 (34%), Positives = 209/368 (56%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++S+ +R L Sbjct: 15 KKPSIYSLQLHEMQDWLKEQGEP----KFRAVQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I + + ++ S DGT K+L + + IETV + + ++CV++QVGC Sbjct: 71 SNSFDITTLKTLVKQTSSDGTIKFLFQ-----LYDGYSIETVLMRHEYGNSICVTTQVGC 125 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+DN+ L I + GL R +T+STSG +P I + EE + + AISL Sbjct: 172 MGIGEPFDNYDNLMGFLRIINHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++LR+ L+PINR Y L L++A ++Y + RRITFEY + G ND A L Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 351 QLRAKERK 358 >gi|317050952|ref|YP_004112068.1| radical SAM enzyme, Cfr family [Desulfurispirillum indicum S5] gi|316946036|gb|ADU65512.1| radical SAM enzyme, Cfr family [Desulfurispirillum indicum S5] Length = 342 Score = 219 bits (559), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 126/359 (35%), Positives = 193/359 (53%), Gaps = 31/359 (8%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 ++++ +G P + R Q W+Y +G D +++S+E+R LL + +I +P Sbjct: 10 QQVQRLFADLGQP----KFRVDQFLAWVYAKGCLDMDAYTNVSKELRSLLRE--TIHFPR 63 Query: 75 IVDEKIS---CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131 E + D TRK LLRFP +ETV IP S+ + C+S+QVGC + C+FC Sbjct: 64 YTIESVQHSRVDNTRKILLRFP-----DGHAVETVLIPVHSKLSQCLSTQVGCKMGCTFC 118 Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191 T + RNL+ EIL Q AR ++ ++ N V MGMGEPL Sbjct: 119 ATASMGFKRNLSVSEILAQAFAAREII---------------EPHERVGNFVFMGMGEPL 163 Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDL 250 N++N ++ + +S R +TLST G + I R+ EE+ LAISLHAV+++ Sbjct: 164 DNYENSIAAIKTIIHPQMMGYSHRHVTLSTCGILKGIRRLSREELPCNLAISLHAVNDEQ 223 Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310 R+ L+P+NR L L+ R +P LS+ + IT EY++++ NDS DA L+++L+G+ Sbjct: 224 RSFLMPVNRADGLHALMQTLREFP-LSSKKVITIEYLLIRDFNDSTDDAKKLLQLLRGLR 282 Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369 K+NLI +NP +Y D+K ++ F + G + IR G DI AACGQL S Sbjct: 283 CKVNLIVYNPHDYADYHAPDEKRVLQFQRILAEKGVMTFIRKSGGSDIDAACGQLAGKS 341 >gi|148270145|ref|YP_001244605.1| ribosomal RNA large subunit methyltransferase N [Thermotoga petrophila RKU-1] gi|281412513|ref|YP_003346592.1| radical SAM enzyme, Cfr family [Thermotoga naphthophila RKU-10] gi|205829917|sp|A5ILF6|RLMN_THEP1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|147735689|gb|ABQ47029.1| radical SAM enzyme, Cfr family [Thermotoga petrophila RKU-1] gi|281373616|gb|ADA67178.1| radical SAM enzyme, Cfr family [Thermotoga naphthophila RKU-10] Length = 343 Score = 219 bits (559), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 137/363 (37%), Positives = 206/363 (56%), Gaps = 32/363 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++L+ + EEL + +G+ R R QI WI+ + + +F M+++S++ R LL + Sbjct: 2 KNLLDLSYEELITEITNLGLE----RYRADQILDWIFNKKVNNFDEMTNLSKKHRALLKE 57 Query: 67 HFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 HFSI + +++D+K+S DGT K+L G +E ++ P+ R T C+S+QVGC Sbjct: 58 HFSIPFLKLLDKKVSRIDGTTKFLWELED---GNTIESVMLFHPD--RITACISTQVGCP 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG VRNLT EI+ Q+L E E +KI N+V M Sbjct: 113 VKCIFCATGMSGFVRNLTTGEIVAQIL----------SMEKEE-------KKKIGNVVYM 155 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 GMGEPL N++N KS+ + + RRIT+ST G I ++ EE + V LA+SLH Sbjct: 156 GMGEPLLNYENTIKSIRTLNHKKMGNIGIRRITISTVGIPDRIIQLAEEGLDVKLALSLH 215 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N R+ LVP+N+KY +E +++A + Y R+T EYV++KG+ND DA L + Sbjct: 216 APTNFKRDQLVPLNKKYSIEEILNAVKIYQK-KTGNRVTIEYVLIKGMNDEISDAKKLAE 274 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKD-IVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ILK + +NLIP N P E L ++ ++TF + SG + IR +G DI AACG Sbjct: 275 ILKNMKVFVNLIPVN--PTVEDLKKPSRERLLTFKRILLESGIEAEIRREKGADIEAACG 332 Query: 364 QLK 366 QL+ Sbjct: 333 QLR 335 >gi|317495216|ref|ZP_07953586.1| cfr family radical SAM enzyme [Gemella moribillum M424] gi|316914638|gb|EFV36114.1| cfr family radical SAM enzyme [Gemella moribillum M424] Length = 377 Score = 219 bits (559), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 126/369 (34%), Positives = 203/369 (55%), Gaps = 25/369 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +K S+ + ++LEE L+ IG + R QI+ W+Y + I F M ++ + ++ Sbjct: 18 FEKMSIYSIRLDQLEEYLVSIG----EKKFRAKQIYDWLYKKRITSFTEMKNVPKSLQEK 73 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L + F I + ++ S DGT K+L + IE+V + K +LCV++QVG Sbjct: 74 LAEEFEITTLNTIIKQESIDGTMKFLFELQDKYT-----IESVLMKNKYGNSLCVTTQVG 128 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C+FC + L RNL A EI+ QVL + L G +IS+IV Sbjct: 129 CRIGCTFCASTLGGLKRNLEAGEIVSQVLKVQQEL--------------DKRGERISSIV 174 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242 +MG+GEP N+D + + I + + R IT+STSG VP I E+I + A+S Sbjct: 175 IMGIGEPFENYDEMMDFIKIVNSDESFNIGARHITVSTSGIVPKIYDFANEKIQINFAVS 234 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++P+NR Y ++ L++A ++Y +N RRITFEY ++ +ND A L Sbjct: 235 LHAPTNELRSKIMPVNRAYNIDKLMEALKYYQKTTN-RRITFEYGLMGKVNDQREHAEKL 293 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +I+K + +NLIP N P Y+ + + DI F + +K++ + IR +G DI AAC Sbjct: 294 SEIIKDLNCHVNLIPINYVPERNYVRTSKNDIFAFEKVLKKNRVNVTIRRTQGDDIDAAC 353 Query: 363 GQLKSLSKR 371 GQL++ ++ Sbjct: 354 GQLRAKERK 362 >gi|218282588|ref|ZP_03488826.1| hypothetical protein EUBIFOR_01408 [Eubacterium biforme DSM 3989] gi|218216459|gb|EEC89997.1| hypothetical protein EUBIFOR_01408 [Eubacterium biforme DSM 3989] Length = 336 Score = 219 bits (559), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 122/334 (36%), Positives = 193/334 (57%), Gaps = 21/334 (6%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93 R QI++W+Y + D M+++S+E R +L + F + E++ +++S DGT K+L + Sbjct: 14 RGHQIFQWLYRNRVFDIDEMTNVSKETREILKKDFIVNPLELIKKQVSHDGTTKFLFKTS 73 Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153 + +E+V + ++CVSSQVGC++ C+FC +G K R+LT+ E++ QV+ Sbjct: 74 DGAL-----LESVMMVFDYGRSVCVSSQVGCNMGCAFCASGLTKKKRDLTSGEMVAQVMY 128 Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213 + L D + + ++S+IV+MG GEP N+DNV L+ + GL Sbjct: 129 VQKEL-------DKDNL-------RLSHIVVMGTGEPFDNYDNVMNFLATVNHDRGLGIG 174 Query: 214 KRRITLSTSGFVPNIAR-VGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 R IT+ST G VP I E LAISLHA +++LR+ L+P+N YPL+ L++A ++ Sbjct: 175 SRHITISTCGIVPRIYDFANEHTQYNLAISLHAPNDELRDQLMPVNHAYPLKELMEAIQY 234 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y G N RR+TFEY++LKG+ND P A L K+L G+ A +NLIP+N + Sbjct: 235 Y-GKENNRRLTFEYILLKGVNDHPEHAKQLSKLLHGMNAYVNLIPYNAVDEKGFKSVTHD 293 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + + F + + ++ IR G DI AACGQL+ Sbjct: 294 EAMVFYDLLMKNYVRCTIRKEHGNDIDAACGQLR 327 >gi|288554554|ref|YP_003426489.1| ribosomal RNA large subunit methyltransferase N [Bacillus pseudofirmus OF4] gi|288545714|gb|ADC49597.1| ribosomal RNA methyltransferase N, heat shock prot [Bacillus pseudofirmus OF4] Length = 360 Score = 219 bits (559), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 134/370 (36%), Positives = 216/370 (58%), Gaps = 32/370 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + KES+ G+ ++L E L++ G H + R +Q+W W+Y + ++ F M++++++ L Sbjct: 1 MHKESIYGLTMDQLTEWLMERG----HKKFRATQVWDWLYRKRVKSFDEMNNVNKDCLEL 56 Query: 64 LNQHFSI-IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L ++F I E V ++ S DGT K+L + + IETV + K ++CV++QV Sbjct: 57 LRENFVISTLTEHVKQE-SSDGTIKFLFKLYDGNL-----IETVLMKHKYGLSVCVTTQV 110 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR--KIS 180 GC++ CSFC +G K R+L++ EI+ Q++ + L SVG+ ++S Sbjct: 111 GCNIGCSFCASGLLKKSRDLSSGEIVEQIMNVQHHL--------------DSVGKDERVS 156 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVML 239 +IV+MG+GEP NFDN+ L I D GL+ R IT+STSG I + ++ V L Sbjct: 157 HIVVMGIGEPFDNFDNMVDFLEIMKDHKGLAIGARHITVSTSGLADKIYEFADLKLQVNL 216 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 AISLHA +N+LR ++ IN+ P+E L+ A +Y +N R+IT EY++LKG+ND A Sbjct: 217 AISLHAPNNELRTKIMKINKAIPIEKLMKAIDYYLEKTN-RKITIEYILLKGVNDQREHA 275 Query: 300 LNLIKILKGIP--AKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L ++ K +NLIP+NP +Y S ++DI+ F + +K++G + +R G Sbjct: 276 KELAEMFKDKRHLTYVNLIPYNPVDEHGQYQRSIKEDILGFYDELKKNGINCGVRLEHGT 335 Query: 357 DILAACGQLK 366 DI AACGQL+ Sbjct: 336 DIDAACGQLR 345 >gi|237650461|ref|ZP_04524713.1| radical SAM enzyme, Cfr family protein [Streptococcus pneumoniae CCRI 1974] gi|237821909|ref|ZP_04597754.1| radical SAM enzyme, Cfr family protein [Streptococcus pneumoniae CCRI 1974M2] Length = 361 Score = 219 bits (559), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 129/368 (35%), Positives = 212/368 (57%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI+ Q++L + D G ++ ++S+IV Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N++NV +D G++ R IT+STSG I +E + V LA+S Sbjct: 159 VMGIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ INR +P+E L A +Y +N RR+TFEY+ML +ND AL L Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++LK I + +NLIP+NP +Y S ++ ++ F + +K+ G + +R G DI Sbjct: 278 TELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|150021379|ref|YP_001306733.1| ribosomal RNA large subunit methyltransferase N [Thermosipho melanesiensis BI429] gi|205829916|sp|A6LN47|RLMN_THEM4 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|149793900|gb|ABR31348.1| radical SAM enzyme, Cfr family [Thermosipho melanesiensis BI429] Length = 340 Score = 219 bits (559), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 131/365 (35%), Positives = 208/365 (56%), Gaps = 36/365 (9%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++++ + EEL +IG+ + R Q+ WIY + + +F+ M+++S+E R LL++ Sbjct: 2 KNILDLKYEELVNEFQRIGLE----KYRVDQVLNWIYKKKVFEFEKMTNLSKEHRKLLSE 57 Query: 67 HFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F I P+++D +IS D T K+L G IE+V + R T C+S+QVGC Sbjct: 58 KFFIDLPKLLDMQISKIDKTTKFLWELRD---GNT--IESVALFHSGRVTACISTQVGCP 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVL---LARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 + C FC TG VRNLT EI+ Q+L L R + K+ N+ Sbjct: 113 VKCEFCATGQSGFVRNLTVGEIVSQILAIELNRKI--------------------KVGNV 152 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 V MGMGEPL NF+NV S+ + +D L+ RRIT+ST G I + E + V LA+ Sbjct: 153 VYMGMGEPLLNFENVIDSIKMLNDKKMLNIGIRRITVSTVGIPEKIIALAESGLNVKLAL 212 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHAV++ R+ ++P+N+KY +E LI + R Y ++ R+T EY++++ ND P DA+ Sbjct: 213 SLHAVTDYKRDQIIPLNKKYSVEELIYSLRKYQEIT-GNRVTIEYILIREFNDYPEDAIR 271 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L+++L+G+ +NLIP NP ++ ++ + F E ++++G IR +G DI AA Sbjct: 272 LVELLRGLSVYVNLIPINP-VNPKFHRPNRWALERFKEILEKNGIECEIRKEKGTDIDAA 330 Query: 362 CGQLK 366 CGQL+ Sbjct: 331 CGQLR 335 >gi|257125946|ref|YP_003164060.1| radical SAM enzyme, Cfr family [Leptotrichia buccalis C-1013-b] gi|257049885|gb|ACV39069.1| radical SAM enzyme, Cfr family [Leptotrichia buccalis C-1013-b] Length = 372 Score = 219 bits (558), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 130/366 (35%), Positives = 199/366 (54%), Gaps = 26/366 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K ++GM E L+ ++I R + SQ++ W++ + + +F S+IS++ R + Sbjct: 20 VEKIDILGMDLESLQRKFVEI----RLKKFNASQVFDWLHNKLVFNFDEFSNISKKDREI 75 Query: 64 LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L + F + E ++S DG T K+L + + IE+V I K+R TLCVSSQ+ Sbjct: 76 LKEKFYVEKLEFKTHQVSEDGDTEKFLFELKDKRL-----IESVLISHKNRHTLCVSSQI 130 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC T T RNL+ EILLQ + L G K+ N+ Sbjct: 131 GCLIGCDFCATATMTYERNLSISEILLQYYYVQKHL--------------LQRGEKLGNV 176 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241 V MGMGEP N+D V S+++ + G +FSKR T+STSG V I R E E + LAI Sbjct: 177 VYMGMGEPFLNYDAVLGSINMLNSPKGQNFSKRNFTISTSGIVNGIKRFTENENQINLAI 236 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH+V +D+RN ++PIN+++ ++ L ++ Y + RITFEY+++ +N P DA Sbjct: 237 SLHSVKDDVRNEIMPINKRWGVKQLKESLLEYQKQT-KNRITFEYILINDLNCEPEDARE 295 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L L +NLIP+NP G Y ++ F + +K + +R +G DI AA Sbjct: 296 LAGFLNSFSCLVNLIPYNPVGGKPYKTPSKQKQREFYKLLKDKNVNVTLRETKGQDIAAA 355 Query: 362 CGQLKS 367 CGQLK+ Sbjct: 356 CGQLKA 361 >gi|237738438|ref|ZP_04568919.1| radical SAM domain-containing protein [Fusobacterium mortiferum ATCC 9817] gi|229420318|gb|EEO35365.1| radical SAM domain-containing protein [Fusobacterium mortiferum ATCC 9817] Length = 356 Score = 219 bits (558), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 140/376 (37%), Positives = 214/376 (56%), Gaps = 32/376 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + ++ELEE ++ +G+ + + + Q++ W++ + +RD ++++S + R LL Sbjct: 7 EKINLLNLNQQELEEFVVSLGMKKFYGK----QLFNWLHKKIVRDLNEVTNLSLKDRELL 62 Query: 65 NQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQV 122 + I + ++ +IS D T K+L + G IETV + K R TLC+SSQV Sbjct: 63 TEKAYIPFLNLLKHQISKIDKTEKFLFQLED---GNT--IETVLLRHKDKRNTLCISSQV 117 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC++ C+FC TG VR+L EI+ QV IE ++ G ++NI Sbjct: 118 GCAVKCAFCATGQGGFVRDLNVSEIINQVY-------------TIERRLVKQ-GTNLNNI 163 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAI 241 V MGMGEPL N NV K+L I S+ G++ SKR+IT+STSG VPNI ++ E++ V LAI Sbjct: 164 VFMGMGEPLLNLTNVLKALEILSNENGINISKRKITISTSGIVPNIEKILLEKVPVELAI 223 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH+ N+ R+ ++PINR+YPLE L + Y + RRITFEY+++ N S DA Sbjct: 224 SLHSAINEKRDEIIPINRRYPLEDLHAVLQEYQRQT-KRRITFEYILINNFNVSEGDANA 282 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDI---VTFSECIKRSGYSSPIRTPRGLDI 358 L + +NLIP NP G E K I V F + +++ + IR +G DI Sbjct: 283 LADFVHDFDHVVNLIPCNPVEGTEMTRPSDKKIERFVNFLQNVRKVNVT--IRREKGTDI 340 Query: 359 LAACGQLKSLSKRIPK 374 ACGQL+ +K+ K Sbjct: 341 DGACGQLRQKNKKPTK 356 >gi|311748631|ref|ZP_07722416.1| radical SAM enzyme, Cfr family [Algoriphagus sp. PR1] gi|126577157|gb|EAZ81405.1| radical SAM enzyme, Cfr family [Algoriphagus sp. PR1] Length = 352 Score = 219 bits (558), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 133/366 (36%), Positives = 202/366 (55%), Gaps = 24/366 (6%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M ++K + + EELEE L G + R Q++ W++ + +++F MS+IS E Sbjct: 1 MEEIQKSDVRKLSLEELEEFFLAHG----EKKFRAKQVYDWLWNKSLKNFDDMSNISLET 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R LL ++F I + + + S DGT K ++ I +E+V IP R T CVSS Sbjct: 57 RELLKKYFKINHILVDLMQHSSDGTIKNAVKLYDDKI-----VESVLIPTSKRITACVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGCSL C+FC T K +RNL +EI QV+ + E+ E R ++ Sbjct: 112 QVGCSLDCNFCATARLKRMRNLNPDEIYDQVVAIK---------EEAEKYF----ERPLT 158 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVML 239 NIV MGMGEPL N+ NV ++ + GL + RRITLST G I ++ + E+ L Sbjct: 159 NIVFMGMGEPLLNYANVLAAIDKITSPEGLGMAARRITLSTVGVTKMIRKMADDEVKFNL 218 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH+ N+ R+ L+PIN P+E L ++ +++ R++T+EYV+ G+ND R A Sbjct: 219 AVSLHSAINETRSRLMPINDSNPVEELGESLKYWYK-KTGRKVTYEYVIWDGVNDDERHA 277 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L K K IP+K+N+I +NP E+ + Q+ + + ++ G + +R RG DI Sbjct: 278 RALAKFCKLIPSKVNIIQYNPIDEGEFRQAKQEAVDMYIRVLESQGVIAKVRKSRGQDID 337 Query: 360 AACGQL 365 AACGQL Sbjct: 338 AACGQL 343 >gi|159900818|ref|YP_001547065.1| ribosomal RNA large subunit methyltransferase N [Herpetosiphon aurantiacus ATCC 23779] gi|205829775|sp|A9AY55|RLMN_HERA2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|159893857|gb|ABX06937.1| radical SAM enzyme, Cfr family [Herpetosiphon aurantiacus ATCC 23779] Length = 363 Score = 219 bits (558), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 131/358 (36%), Positives = 202/358 (56%), Gaps = 21/358 (5%) Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76 L L ++G P R QI+ +Y + DF M+D+ +R L + I E+V Sbjct: 11 LTAQLTELGQPA----FRARQIYAHLYKKLANDFAAMTDLPAALREQLTANLQIGSLELV 66 Query: 77 DEKISCDG-TRKWLLRFPARCIGGPVEIETV---YIPEKSRGTLCVSSQVGCSLTCSFCY 132 E+ + DG TRK L R P G IETV Y P+ R T+CVS+Q GC++ C FC Sbjct: 67 REQTTDDGLTRKVLWRCP-----GDAVIETVLMIYPPD--RATICVSTQAGCAMGCVFCA 119 Query: 133 TGTQKLVRNLTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191 TG L+RN+++ EI+ QVL R L + G +P I+N+V MGMGEP Sbjct: 120 TGKLGLLRNISSGEIMEQVLYFERYLRNEGAAIAKRHGGPVPD---HITNLVFMGMGEPF 176 Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDL 250 N++ ++ +D G + R +T+ST G V I ++ +E + V LA+SLHA ++ L Sbjct: 177 ANYERWWAAVERLNDKQGFNLGARNMTVSTVGLVKGIRQLADEALQVNLAVSLHAPNDQL 236 Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310 R+ L+P+N ++ + L+DA R+Y ++ RR++FEYV+L ND+P A L ++KG+ Sbjct: 237 RSELMPVNDRFDISDLMDAIRYYTDKTH-RRVSFEYVLLDDKNDTPELAAQLASLVKGML 295 Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 +NLIP+NP PG S ++ + F ++ +G S +R RG++I AACGQL ++ Sbjct: 296 CHVNLIPWNPIPGTPLTRSHRERVTAFQRVVQAAGISCTVRVERGVEIAAACGQLAAI 353 >gi|260591531|ref|ZP_05856989.1| radical SAM enzyme, Cfr family [Prevotella veroralis F0319] gi|260536562|gb|EEX19179.1| radical SAM enzyme, Cfr family [Prevotella veroralis F0319] Length = 346 Score = 219 bits (558), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 129/365 (35%), Positives = 198/365 (54%), Gaps = 29/365 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ L+GM EL+E +G+P Q+ KW+Y + ++ M++IS+ R L Sbjct: 5 KKYLLGMTLGELKEVAKSLGMPA----FTGGQMAKWLYSQHVKSIDEMTNISKANREKLA 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I E +D + S DGT K+L FP G +ETVYIPE+ R TLCVSSQ+GC Sbjct: 61 AEYEIGCKEPIDAQHSKDGTIKYL--FPTD--SGKF-VETVYIPEEDRATLCVSSQIGCK 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q NL+A +IL Q+ +P K++NIV M Sbjct: 116 MNCLFCQTGKQGFEGNLSATDILNQIY------------------SLPERD-KLTNIVFM 156 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 G GEP+ N DNV ++ + + G ++S +RIT+S+ G + R EE +AIS+H+ Sbjct: 157 GQGEPMDNLDNVLRTTEVLTADFGYAWSPKRITVSSVGIKGKLKRFLEESNCHVAISMHS 216 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ R+ L+P R +E +++ +Y S+ RR++FEY++ KG+NDS A ++K+ Sbjct: 217 PLHEQRSELMPAERGMSIESIVELLSNYD-FSHQRRLSFEYIVFKGVNDSEEHAKAIVKL 275 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 ++GI ++NLI F+P P D + F + + G + IR RG DI AACG L Sbjct: 276 VRGIECRVNLIRFHPIPNIPLHGVDDHKMEQFRNYLTQHGVFTTIRASRGQDIFAACGLL 335 Query: 366 KSLSK 370 + K Sbjct: 336 STAKK 340 >gi|47569490|ref|ZP_00240170.1| radical SAM enzyme, Cfr family [Bacillus cereus G9241] gi|47553819|gb|EAL12190.1| radical SAM enzyme, Cfr family [Bacillus cereus G9241] Length = 362 Score = 219 bits (558), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 127/368 (34%), Positives = 208/368 (56%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++S+ +R L Sbjct: 15 KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I + ++ S DGT K+L + + IETV + + ++CV++QVGC Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQ-----LYDGYSIETVLMRHEYGNSICVTTQVGC 125 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDESE--------------ERVSSLVV 171 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+DN+ L I + GL R +T+STSG +P I + EE + + AISL Sbjct: 172 MGIGEPFDNYDNLMGFLRIINHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++LR+ L+PINR Y L L++A ++Y + RRITFEY + G ND A L Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 351 QLRAKERK 358 >gi|229031494|ref|ZP_04187494.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus AH1271] gi|228729783|gb|EEL80763.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus AH1271] Length = 362 Score = 219 bits (558), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 126/368 (34%), Positives = 205/368 (55%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S+ + E+++ L + G P + R QI+ W+Y + ++++ MS++S+ +R L Sbjct: 15 KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYDDMSNLSKGLRDKL 70 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I + ++ S DGT K+L + + IETV + + ++CV++QVGC Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQ-----LYDGYSIETVLMRHEYGNSICVTTQVGC 125 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+DN+ L I + G+ R +T+STSG VP I + EE + + AISL Sbjct: 172 MGIGEPFDNYDNLMSFLRIINHEKGIHIGARHMTVSTSGIVPKIYKFAEEDMQINFAISL 231 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ + +LR+ L+PINR Y L L++A ++Y RRITFEY + G ND A L Sbjct: 232 HSANTELRSKLMPINRAYKLPDLMEAVKYYVN-KTGRRITFEYGLFGGENDQVEQAEELA 290 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 351 QLRAKERK 358 >gi|322412262|gb|EFY03170.1| radical SAM superfamily protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 360 Score = 219 bits (558), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 131/368 (35%), Positives = 206/368 (55%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + RE+L + I + R +QIW W+Y + ++ F M++IS++ +L Sbjct: 2 KPSIYSLTREDL----IAWAIDHGQKKFRATQIWDWVYKKRVQSFDDMTNISKDFIAILK 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 ++F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 ENFCVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L + EI Q++L + D G ++ ++S++V Sbjct: 111 CNIGCTFCASGLIKKQRDLNSGEITAQIMLVQKYF-DERGQDE-----------RVSHVV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+ NV L +D GL+ R IT+STSG I E + V LA+S Sbjct: 159 VMGIGEPFDNYQNVMSFLRTINDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +NDLR+ ++ INR +PLE L A +Y +N RR+TFEY+ML +ND A L Sbjct: 219 LHAPNNDLRSSIMRINRSFPLEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQAQEL 277 Query: 303 IKILKGIP--AKINLIPFNP-WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 + K I + +NLIP+NP +Y S ++ + F + +K++G + +R G DI Sbjct: 278 ADLTKNIRKLSYVNLIPYNPVSEHDQYSRSPKERVSAFYDVLKKNGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|320101749|ref|YP_004177340.1| 23S rRNA m(2)A-2503 methyltransferase [Isosphaera pallida ATCC 43644] gi|319749031|gb|ADV60791.1| 23S rRNA m(2)A-2503 methyltransferase [Isosphaera pallida ATCC 43644] Length = 400 Score = 219 bits (558), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 127/334 (38%), Positives = 188/334 (56%), Gaps = 22/334 (6%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93 R+ Q+ +WI+ + R F M+D+ +R L +++ ++ + + DGT K LL Sbjct: 55 RSDQVARWIFQKRARSFAVMTDLPAGLRLALESSWAVYQTRVIRRQTATDGTDKLLLE-- 112 Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153 C G IETV + E+ R T+CVSSQVGC + C FC +G + + RNLT EI ++L Sbjct: 113 --CRDGR-RIETVLMREEDRRTVCVSSQVGCGMGCVFCASGLKGVERNLTVGEITEELLH 169 Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213 AR LL + +++NIV+MGMGE L N +N+ +L GL S Sbjct: 170 ARDLLPEH---------------ERLTNIVVMGMGESLANLENLIAALDRICSPSGLGLS 214 Query: 214 KRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 +R +T+ST G I R+ + LA+SLHA + +LR+ LVPIN K L +++A H Sbjct: 215 QRAVTISTVGLPEKIKRLAALDRRYHLAVSLHAPTEELRDQLVPINHKVGLRAVMEAADH 274 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y ++ R++TFEYV+L GIND RDA +L+ +L G A +NLIP+NP G Y + Sbjct: 275 YFAVTG-RQVTFEYVLLGGINDRDRDARDLVALLAGRKAHVNLIPYNPVAGLPYERPAPR 333 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 D+ F ++ G S +R +G I AACGQL+ Sbjct: 334 DLDRFVRRCRQGGLSVSVRKTKGKRIDAACGQLR 367 >gi|258511306|ref|YP_003184740.1| radical SAM enzyme, Cfr family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478032|gb|ACV58351.1| radical SAM enzyme, Cfr family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 348 Score = 219 bits (558), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 119/337 (35%), Positives = 199/337 (59%), Gaps = 22/337 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI-IYPEIVDEKISCDGTRKWLLR 91 R Q+++W+Y + + F M+++ + +R LN+ + ++V + D T K+LL Sbjct: 25 FRAVQLYEWMYQKRAKSFDEMTNLPKALRQRLNEMAYLRSAKQVVRQDSKVDPTTKFLLA 84 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 +P V +E+V + ++CVSSQVGC + C+FC + ++R++TA E++ QV Sbjct: 85 WP-----DGVTVESVLMRHGYGNSVCVSSQVGCKMGCTFCASTLGGMIRHMTAGEMVEQV 139 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 + ++SLL + VG+++S++V+MG GEP+ N+D V + + I ++ GL+ Sbjct: 140 MHSQSLLDE--------------VGQRVSSVVVMGSGEPMDNYDQVMRFIDIITNEHGLN 185 Query: 212 FSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 +R IT+ST G VP I R+ EE + LA+SLHA ++ +R ++P+N+ YP+ L++AC Sbjct: 186 IGQRHITVSTVGLVPGIRRLAEEGRQITLAVSLHAPNDAIRGRMMPVNKAYPIAKLMEAC 245 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 Y RRI+FEY ++ G NDS A L +++KG+P +NLIP N P Y +D Sbjct: 246 HDYY-RKTGRRISFEYALVAGENDSLECAKELAELVKGLPCHVNLIPVNYVPERGYRRTD 304 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 +K I F + +G ++ IR G DI AACGQL++ Sbjct: 305 RKQIFAFWRALLDAGVNATIRREMGHDIAAACGQLRA 341 >gi|15900662|ref|NP_345266.1| ribosomal RNA large subunit methyltransferase N [Streptococcus pneumoniae TIGR4] gi|81620462|sp|Q97RN5|RLMN_STRPN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|14972243|gb|AAK74906.1| conserved hypothetical protein [Streptococcus pneumoniae TIGR4] Length = 361 Score = 219 bits (558), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 130/368 (35%), Positives = 213/368 (57%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ ++ + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLVHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI+ Q++L + D G ++ +IS+IV Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RISHIV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N++NV +D G++ R IT+STSG I +E + V LA+S Sbjct: 159 VMGIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ INR +P+E L A +Y +N RR+TFEY+ML +ND AL L Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++LK I + +NLIP+NP +Y S ++ ++ F + +K+ G + +R G DI Sbjct: 278 TELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKECVLAFYDTLKKKGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|225569231|ref|ZP_03778256.1| hypothetical protein CLOHYLEM_05313 [Clostridium hylemonae DSM 15053] gi|225162030|gb|EEG74649.1| hypothetical protein CLOHYLEM_05313 [Clostridium hylemonae DSM 15053] Length = 356 Score = 219 bits (558), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 123/336 (36%), Positives = 190/336 (56%), Gaps = 25/336 (7%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISC-DGTRKWLLR 91 R+ QI++W++VR F M+++S+++R L+ + I + + +IS D T K+L R Sbjct: 26 FRSRQIYEWLHVRLADSFDEMTNLSKKLREQLSAEYEIREVTLTERQISSVDPTEKFLFR 85 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 C G VE +V + ++C+SSQ GC + C FC + L+RNLT E+L Q+ Sbjct: 86 L---CEGNMVE--SVLMRYSYGNSVCISSQAGCRMGCRFCASTLDGLMRNLTPSEMLRQI 140 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 + L+G+ +ISN+V+MG GEPL N+DN + + + SD GL+ Sbjct: 141 YQIQKLIGE-----------------RISNVVVMGTGEPLDNYDNFLQFIRMVSDEHGLN 183 Query: 212 FSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 S+R IT ST G VPN+ R+ EE + + LA+SLH + + R L+P+ KY L +++AC Sbjct: 184 ISQRNITASTCGIVPNMRRLAEEDLQITLALSLHGSTQEKRKALMPVANKYELAEVLEAC 243 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 +Y RRITFEY +++G+ND P D L +LK +NLIP NP ++ D Sbjct: 244 DYYFE-KTGRRITFEYSLVQGVNDQPEDVRELTALLKRRNCHLNLIPVNPIKERNFVRPD 302 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 K+ F ++++G + IR RG DI ACGQL+ Sbjct: 303 SKNAHEFKNKLEKNGINVTIRRERGSDIDGACGQLR 338 >gi|148992431|ref|ZP_01822126.1| hypothetical protein CGSSp9BS68_08432 [Streptococcus pneumoniae SP9-BS68] gi|168488437|ref|ZP_02712636.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae SP195] gi|147928748|gb|EDK79761.1| hypothetical protein CGSSp9BS68_08432 [Streptococcus pneumoniae SP9-BS68] gi|183572944|gb|EDT93472.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae SP195] gi|332073108|gb|EGI83587.1| radical SAM superfamily protein [Streptococcus pneumoniae GA17570] Length = 361 Score = 219 bits (558), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 130/368 (35%), Positives = 212/368 (57%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DQFVVNPLKQGIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI+ Q++L + D G ++ ++S+IV Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N++NV +D G++ R IT+STSG I +E + V LA+S Sbjct: 159 VMGIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ INR +P+E L A +Y +N RR+TFEY+ML +NDS AL L Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDSVEQALEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++LK I + NLIP+NP +Y S ++ ++ F + +K+ G + +R G DI Sbjct: 278 TELLKNIKKLSYANLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|28210911|ref|NP_781855.1| ribosomal RNA large subunit methyltransferase N [Clostridium tetani E88] gi|75542526|sp|Q895P8|RLMN_CLOTE RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|28203350|gb|AAO35792.1| florfenicol resistance protein [Clostridium tetani E88] Length = 349 Score = 219 bits (558), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 133/361 (36%), Positives = 201/361 (55%), Gaps = 27/361 (7%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 ++I ++ LE+ L K I + R Q+ W+Y +G+ +F+ M +I + + + L ++ Sbjct: 3 NMINLLDLSLED-LKKWMIENKEKEFRAKQVLDWVY-KGVYNFEAMKNIPKVITNKLQEN 60 Query: 68 FSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 F + P +V + +S D T K+L ++ I IE+V + K T+CVS+QVGC + Sbjct: 61 FYLSVPSVVQKYVSKDESTVKFLFKYNDGNI-----IESVVMKYKHGNTICVSTQVGCKM 115 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC + +VR+L+ EIL QVL A+ G +ISNIVMMG Sbjct: 116 GCTFCASTIGGIVRSLSHGEILGQVLKAQ-----------------EETGERISNIVMMG 158 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 GEPL N+DN + + + GL+ +R ITLST G VP I ++ EE + + LAISLHA Sbjct: 159 SGEPLDNYDNSLNFIRMVNAENGLNIGQRHITLSTCGIVPKIRQLAEENLQITLAISLHA 218 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++R +PI Y +E LI+AC +Y +N RRITFEY ++ +ND A L + Sbjct: 219 PNDNIRRKTMPIASVYSVEELIEACNYYINKTN-RRITFEYALVSNLNDKEVHAEELATL 277 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG+ +NLIP N ++ S I FS + +SG + IR G DI AACGQL Sbjct: 278 LKGMLCHVNLIPVNKIDEKDFKSSSTNRIKNFSNILLKSGIQTTIRREMGSDINAACGQL 337 Query: 366 K 366 + Sbjct: 338 R 338 >gi|299141914|ref|ZP_07035049.1| radical SAM enzyme, Cfr family [Prevotella oris C735] gi|298576765|gb|EFI48636.1| radical SAM enzyme, Cfr family [Prevotella oris C735] Length = 348 Score = 219 bits (558), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 133/374 (35%), Positives = 205/374 (54%), Gaps = 30/374 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K++L+GM EL+EA ++G+P QI KW+Y ++ M++IS+ R L Sbjct: 5 KKALLGMTLNELKEACKQLGMPA----FTGGQIAKWLYTHHVKHIDEMTNISKTNRAKLE 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + ++I E ++ ++S DGT K+L FP +ETVYIPE R TLCVS QVGC Sbjct: 61 EAYTIGCAEALEAQLSKDGTIKYL--FPT---ASGKFVETVYIPENDRATLCVSCQVGCK 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q +LT +IL Q+ +P V K++NIV M Sbjct: 116 MNCLFCQTGKQGFEGSLTTCDILNQIY------------------SLPEVD-KLTNIVFM 156 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 G GEP+ N DN+ ++ I + G ++S +RIT+S+ G + R EE +AISLH+ Sbjct: 157 GQGEPMDNLDNILRTTEILTADYGWAWSPKRITVSSVGVKNKLKRFIEESDCHVAISLHS 216 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + R L+P + + +++ R+Y S+ RR++FEY++ G+NDS A L+K+ Sbjct: 217 PIAEQRAELMPAQKGMSIAEIVELLRNYD-FSHQRRLSFEYIVFGGVNDSMTHARELVKL 275 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG+ +INLI F+ P +D+K + + + G + IR RG DI AACG L Sbjct: 276 LKGLDCRINLIRFHQIPDVPLHGADEKRMEELRDYLTSHGIFTTIRASRGQDIFAACGLL 335 Query: 366 KSLSKRIPKVPRQE 379 S SK+I ++ ++ Sbjct: 336 -STSKKIGEIRHEQ 348 >gi|319937496|ref|ZP_08011901.1| ribosomal RNA large subunit methyltransferase N [Coprobacillus sp. 29_1] gi|319807336|gb|EFW03945.1| ribosomal RNA large subunit methyltransferase N [Coprobacillus sp. 29_1] Length = 342 Score = 219 bits (557), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 129/362 (35%), Positives = 201/362 (55%), Gaps = 28/362 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +S+ +E+L + L++G + R +Q+++W+Y++ + F M++ISQ +R L+ Sbjct: 2 KSIYDYTQEQLIDEFLELGEK----KFRATQVFEWLYLKNVNSFHEMNNISQGLRQKLSA 57 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 +SI +I +++S DGT K+L GG IE V + +LC++SQ+GC++ Sbjct: 58 LYSIGPLQINVKQVSKDGTIKYLFELED---GGL--IEAVLMVHDYGRSLCITSQLGCNM 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC +G K RNLTA E++ QVL V+ G ++S++V+MG Sbjct: 113 ACEFCASGLLKKQRNLTAGEMVNQVL-----------------TVMHDTGERVSHVVVMG 155 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 GEP N+DN+ + I + GL+ R IT+ST G I E I LAISLHA Sbjct: 156 TGEPFDNYDNMMNFIHIINHPKGLAIGARHITISTCGLCDKIEMYAHEGIQSNLAISLHA 215 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++RN L+PIN+KYP++ L + +Y +N RR+T EY++LKG+ND A L Sbjct: 216 PNDEIRNQLMPINKKYPMDKLRETLAYYIQKTN-RRVTLEYILLKGVNDDITHARQLAHY 274 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +KG+ A +NLIP+N Y S QKD+ F + R + R G DI ACGQL Sbjct: 275 VKGLNAYVNLIPYNAVDEHGYQQSLQKDVEAFKAELLRFHINVTQRKEHGRDIDGACGQL 334 Query: 366 KS 367 ++ Sbjct: 335 RA 336 >gi|317505349|ref|ZP_07963277.1| cfr family radical SAM enzyme [Prevotella salivae DSM 15606] gi|315663563|gb|EFV03302.1| cfr family radical SAM enzyme [Prevotella salivae DSM 15606] Length = 348 Score = 219 bits (557), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 134/374 (35%), Positives = 202/374 (54%), Gaps = 30/374 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K++L+GM EL+EA +G+P QI KW+Y ++ M++IS+ R L Sbjct: 5 KKALLGMTLYELKEACRALGMPA----FTGGQIAKWMYTHHVKQIDEMTNISKNNRAKLA 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + ++I E +D + S DGT K+L FP G +ETVYIPE R TLCVS QVGC Sbjct: 61 EAYTIGCNEAIDAQHSKDGTIKYL--FPTH--DGKF-VETVYIPENDRATLCVSCQVGCK 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q +LT +IL QV +P V K++NIV M Sbjct: 116 MNCLFCQTGKQGFEGSLTTTDILNQVY------------------SLPEVD-KLTNIVFM 156 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 G GEP+ N DN+ ++ I + G ++S +RIT+S+ G + R EE +AISLH+ Sbjct: 157 GQGEPMDNLDNILRTTEILTADYGWAWSPKRITVSSVGVKNKLKRFLEESNCHVAISLHS 216 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + R L+P + + ++ R+Y S+ RR++FEY++ GINDS A ++K+ Sbjct: 217 PIAEQRAALMPAQKGMSISEIVSLLRNYD-FSHQRRLSFEYIVFGGINDSTTHAREIVKL 275 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L G+ ++NLI F+ PG +D+K + + + + IR RG DI AACG L Sbjct: 276 LNGLDCRVNLIRFHQIPGVPLHGADEKRMEELRDYLTSHDVFTTIRASRGQDIFAACGLL 335 Query: 366 KSLSKRIPKVPRQE 379 S SK+I ++ ++ Sbjct: 336 -STSKKIGEIRHEQ 348 >gi|259047489|ref|ZP_05737890.1| Cfr family radical SAM enzyme [Granulicatella adiacens ATCC 49175] gi|259035680|gb|EEW36935.1| Cfr family radical SAM enzyme [Granulicatella adiacens ATCC 49175] Length = 371 Score = 219 bits (557), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 127/343 (37%), Positives = 201/343 (58%), Gaps = 28/343 (8%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKI---SCDGTRKW 88 + R Q+W W+Y + + F+ M+++ + + L + F+ +P +++E+I S DGTRK+ Sbjct: 37 KFRAGQLWDWLYRKRVTSFEEMTNLPKALIEELQEEFT--FP-VLNERIKQQSTDGTRKF 93 Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 L + IETV +P++ ++CV++QVGC++ C+FC +G R+L A EI+ Sbjct: 94 LFELADGLL-----IETVLMPQEYGLSICVTTQVGCNIGCTFCASGIIAKQRDLVAGEIV 148 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 QV+ + L + S G ++S+IV+MG+GEP N+DNV K L + + Sbjct: 149 AQVMHVQRTLDEV------------SPGDRVSHIVVMGIGEPFDNYDNVIKFLKVVNSDK 196 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267 GL R IT+STSG P I +E + V LA+SLHA ND R+ ++ INRKYP+E+++ Sbjct: 197 GLGIGARHITVSTSGLAPKIREFADEGLQVNLALSLHAPDNDTRSRIMRINRKYPIEVVM 256 Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNP-WPGC 324 DA Y +N RR+TFEY+ML +NDS A L +L K + +NLIP+N Sbjct: 257 DAINEYIAKTN-RRVTFEYIMLDHVNDSVEQAQQLADLLADKKRLSYVNLIPYNKVREHD 315 Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 +Y S ++ +V F + +K++ + +R G DI AACGQL+S Sbjct: 316 QYERSGKERVVAFYDVLKKNHINCVVRKEFGHDIEAACGQLRS 358 >gi|326798558|ref|YP_004316377.1| ribosomal RNA large subunit methyltransferase N [Sphingobacterium sp. 21] gi|326549322|gb|ADZ77707.1| Ribosomal RNA large subunit methyltransferase N [Sphingobacterium sp. 21] Length = 379 Score = 219 bits (557), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 132/365 (36%), Positives = 200/365 (54%), Gaps = 24/365 (6%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 N KK + + E+L+E+LL +G R QI++W++++ DF M+++S+++R Sbjct: 28 NMGKKVDIRSLSLEQLKESLLALG----EQSFRAKQIFEWLWMKSCVDFDNMTNLSKKLR 83 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L ++F I I + S D T K + I IE V IP R T CVSSQ Sbjct: 84 DSLKENFIINAVRIDKSQYSADKTIKSTFKLFDNNI-----IEGVLIPTPDRMTACVSSQ 138 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGCSLTC FC TG RNL A+EI QV+L + E IP +SN Sbjct: 139 VGCSLTCKFCATGYMDRKRNLNADEIYDQVVLINK--------QAEENYSIP-----LSN 185 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240 IV MGMGEPL N+ NV KS+ + GL+ + +RIT+ST+G I ++G++ + LA Sbjct: 186 IVYMGMGEPLLNYANVLKSIERITAPDGLNMAAKRITVSTAGIAKMIKKLGDDQVKFNLA 245 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++ RN ++PIN + L+ L +A ++Y +T+EY++ ND DA Sbjct: 246 LSLHAANDAKRNEIMPINEQNSLKALAEALKYYFA-KTKNPVTYEYIVFNNFNDELEDAA 304 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L K +P K+N+I +NP ++ ++ I F+ +++ G ++ +R RG DI A Sbjct: 305 ELASFCKHLPCKVNIIEYNPIAFADFENAEGDKIDRFAAFLRKRGITTNVRRSRGKDIDA 364 Query: 361 ACGQL 365 ACGQL Sbjct: 365 ACGQL 369 >gi|310644715|ref|YP_003949474.1| ribosomal RNA large subunit methyltransferase n [Paenibacillus polymyxa SC2] gi|309249666|gb|ADO59233.1| Ribosomal RNA large subunit methyltransferase N [Paenibacillus polymyxa SC2] Length = 365 Score = 219 bits (557), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 135/375 (36%), Positives = 213/375 (56%), Gaps = 28/375 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +KKES+ G+ ++L LL+ G + R Q+W +Y + I DF M+++ + L Sbjct: 1 MKKESIYGLTLDQLTAWLLEHGYK----KSRALQVWDALYRKRITDFAAMTEVHENCTRL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L ++FSI E ++ S DGT K+L R + IETV + K ++CV++QVG Sbjct: 57 LAENFSIETLEEHVKQQSADGTVKFLFRLQDGNL-----IETVLMRHKFGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ CSFC +G K R+L++ EI+ Q++ + L G ++S++V Sbjct: 112 CNIGCSFCASGLLKKSRDLSSGEIVGQIMKVQLYLDQ------------ERPGDRVSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242 +MG+GEP NF N+ + + D GL+ +R IT+STSG I + ++ V LAIS Sbjct: 160 VMGIGEPFDNFVNLSDFIRVIKDHKGLAIGQRHITVSTSGLADKIIEFADSDLHVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N++R ++ INR P+E L+ A +Y +N RRIT EY++LK +ND AL L Sbjct: 220 LHAPNNEIRTRIMKINRAIPIEKLMQAIDYYLDKTN-RRITLEYILLKDVNDGKEHALEL 278 Query: 303 IKIL--KGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 +++ + A +NLIP+NP +Y S+ + I F + +K+ G S +R G+DI Sbjct: 279 AELVGHRRNLANVNLIPYNPVDEHSQYQRSESESITGFYDVLKKQGISCSVRLEHGVDID 338 Query: 360 AACGQLKSLSKRIPK 374 AACGQL+ SK+I K Sbjct: 339 AACGQLR--SKQIRK 351 >gi|325478666|gb|EGC81777.1| 23S rRNA m2A2503 methyltransferase [Anaerococcus prevotii ACS-065-V-Col13] Length = 341 Score = 219 bits (557), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 126/364 (34%), Positives = 201/364 (55%), Gaps = 30/364 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 KE++ +ELEE + G + + R Q+++ I+V I DF M+D+S+++R L+ Sbjct: 2 KENINDKSIKELEEIFEENG----YKKFRAKQVYRQIHVNKINDFSKMTDLSKDMREALD 57 Query: 66 QHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + + ++ E +S D T+K+L I IE+VY+ ++R T+C+SSQVGC Sbjct: 58 KKYKFSSLKLRREFVSKIDSTKKYLFELEDGNI-----IESVYMEYENRKTICISSQVGC 112 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC + LVRN+TA E++ +V + GD I+NIV+ Sbjct: 113 RMGCKFCASTKNGLVRNMTAAELIEEVYELERINGD------------------INNIVI 154 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEPL N+DN+KK + I +D G + S R ITLSTSG P I ++ + + + LA+SL Sbjct: 155 MGIGEPLDNYDNIKKFIEIITDEKGRNLSHRSITLSTSGLAPMIIKLADSGLDINLALSL 214 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H + R +P++ KY + L+ A +Y + RR++FEYV++ G+N+ D NL+ Sbjct: 215 HYADDKKRRQFMPVSNKYSIRELMKATDYYLDKT-KRRVSFEYVVIDGVNNLDEDVDNLV 273 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LKG INLIP NP Y + F + + ++ IR G DI A+CG Sbjct: 274 RLLKGKNVHINLIPLNPIEEFSYNKPKNTALKEFRDKLVSKKLNATIRRSMGSDIDASCG 333 Query: 364 QLKS 367 QL++ Sbjct: 334 QLRN 337 >gi|228992592|ref|ZP_04152519.1| Ribosomal RNA large subunit methyltransferase N [Bacillus pseudomycoides DSM 12442] gi|228998640|ref|ZP_04158227.1| Ribosomal RNA large subunit methyltransferase N [Bacillus mycoides Rock3-17] gi|229006141|ref|ZP_04163828.1| Ribosomal RNA large subunit methyltransferase N [Bacillus mycoides Rock1-4] gi|228755094|gb|EEM04452.1| Ribosomal RNA large subunit methyltransferase N [Bacillus mycoides Rock1-4] gi|228761108|gb|EEM10067.1| Ribosomal RNA large subunit methyltransferase N [Bacillus mycoides Rock3-17] gi|228767226|gb|EEM15862.1| Ribosomal RNA large subunit methyltransferase N [Bacillus pseudomycoides DSM 12442] Length = 362 Score = 219 bits (557), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 125/368 (33%), Positives = 207/368 (56%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S+ + E++ L + G P + R QI+ W+Y + +++++ M+++S+ +R L Sbjct: 15 KKTSIYSLQLHEMQNWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMTNLSKGLRDKL 70 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I + ++ S DGT K+L + + IETV + + ++CV++QVGC Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQ-----LYDGYSIETVLMRHEYGNSICVTTQVGC 125 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TDERVSSLVV 171 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+DN+ L I + G+ R +T+STSG +P I + EE + + AISL Sbjct: 172 MGIGEPFDNYDNLMSFLRIINHEKGIHIGARHMTVSTSGIIPKIYKFAEEDMQINFAISL 231 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA + +LR+ L+PINR Y L L++A ++Y + RRITFEY + G ND A L Sbjct: 232 HAPNTELRSKLMPINRAYKLPDLMEAIKYYVNRT-GRRITFEYGLFGGENDQVEHAEELA 290 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG Sbjct: 291 QLLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 351 QLRAKERK 358 >gi|116511012|ref|YP_808228.1| hypothetical protein LACR_0188 [Lactococcus lactis subsp. cremoris SK11] gi|123025653|sp|Q032R6|RLMN_LACLS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|116106666|gb|ABJ71806.1| 23S rRNA m(2)A-2503 methyltransferase [Lactococcus lactis subsp. cremoris SK11] Length = 365 Score = 219 bits (557), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 133/372 (35%), Positives = 214/372 (57%), Gaps = 29/372 (7%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 S+ G+ R++L E ++ G + R +Q+W W+Y + ++ F+ MS++S LN+ Sbjct: 12 SIYGLTRDQLIEWAIENG----EKKFRATQVWDWLYRKRVQSFEEMSNLSAVFIDKLNEA 67 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F + E V + S DGT K+L P + V IETV + + ++CV++QVGC++ Sbjct: 68 FILNPLEQVVVQESADGTVKYLFMLPDK-----VMIETVLMRQSYGLSVCVTTQVGCNMG 122 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C+FC +G K R++TA EI+ Q++L + D G+ ++S++V+MG+ Sbjct: 123 CTFCASGILKKERDVTAGEIVSQIMLVQKYF-------DERGL-----DERVSHVVVMGI 170 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAISLHA 245 GEP N++++ L + +D GL+ R IT+ST GF+P + E + + LAISLHA Sbjct: 171 GEPFDNYEHLMNFLRVINDDNGLAIGARHITVSTCGFMPAKIKEFAHENLQINLAISLHA 230 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +N+LR L+ I R PLE L +A +Y +N RR+T+EY+ML G NDSP A L + Sbjct: 231 PNNELRTSLMRITRNAPLEKLFEAIDYYTETTN-RRVTYEYIMLSGENDSPEIAQQLADL 289 Query: 306 LK--GIPAKINLIPFNP-WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +K + +NLIP+NP +Y S + + F + +K++G + +R G DI AAC Sbjct: 290 IKPRNKLSYVNLIPYNPVAEHIKYERSTKDNTAKFYDVLKKNGINCVVRQEHGTDIDAAC 349 Query: 363 GQLKSLSKRIPK 374 GQL+ SK+I K Sbjct: 350 GQLR--SKQIKK 359 >gi|148997156|ref|ZP_01824810.1| hypothetical protein CGSSp11BS70_10350 [Streptococcus pneumoniae SP11-BS70] gi|168575427|ref|ZP_02721363.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae MLV-016] gi|194397178|ref|YP_002037414.1| ribosomal RNA large subunit methyltransferase N [Streptococcus pneumoniae G54] gi|307067370|ref|YP_003876336.1| putative Fe-S-cluster redox enzyme [Streptococcus pneumoniae AP200] gi|254807215|sp|B5E369|RLMN_STRP4 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|147756856|gb|EDK63896.1| hypothetical protein CGSSp11BS70_10350 [Streptococcus pneumoniae SP11-BS70] gi|183578600|gb|EDT99128.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae MLV-016] gi|194356845|gb|ACF55293.1| radical SAM enzyme, Cfr family protein [Streptococcus pneumoniae G54] gi|306408907|gb|ADM84334.1| Predicted Fe-S-cluster redox enzyme [Streptococcus pneumoniae AP200] gi|332202631|gb|EGJ16700.1| radical SAM superfamily protein [Streptococcus pneumoniae GA41317] Length = 361 Score = 219 bits (557), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 129/368 (35%), Positives = 212/368 (57%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMCQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI+ Q++L + D G ++ ++S+IV Sbjct: 111 CNIGCTFCSSGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N++NV +D G++ R IT+STSG I +E + V LA+S Sbjct: 159 VMGIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ INR +P+E L A +Y +N RR+TFEY+ML +ND AL L Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++LK I + +NLIP+NP +Y S ++ ++ F + +K+ G + +R G DI Sbjct: 278 TELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|150026118|ref|YP_001296944.1| hypothetical protein FP2080 [Flavobacterium psychrophilum JIP02/86] gi|205829761|sp|A6H1B8|RLMN_FLAPJ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|149772659|emb|CAL44142.1| Protein of unknown function YloN [Flavobacterium psychrophilum JIP02/86] Length = 347 Score = 219 bits (557), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 124/334 (37%), Positives = 196/334 (58%), Gaps = 20/334 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R +Q+++W++ +G F+ M+++S+ R +L ++F I + ++ + S DGT K +R Sbjct: 28 FRGNQVYEWLWSKGAHSFEDMTNVSKGTRQMLVENFVINHIKVDTMQRSSDGTVKNAVRL 87 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 I +E+V IP ++R T CVSSQVGCSL C+FC T K +RNL EI QVL Sbjct: 88 HDGLI-----VESVLIPTETRTTACVSSQVGCSLDCNFCATARLKRMRNLEPGEIYDQVL 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 D E + R +SNIV MGMGEPL N++NV K++ + + S GL Sbjct: 143 AI-----------DRESKLY--FNRPLSNIVFMGMGEPLMNYNNVIKAIDMITSSEGLGM 189 Query: 213 SKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S +RIT+STSG I ++ + E+ LA+SLH+ ++RN ++P + +PL L +A + Sbjct: 190 SPKRITVSTSGVSKMIKKMADDEVKFKLAVSLHSAVEEIRNKIMPFTKSFPLPELREALQ 249 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 ++ + ++ IT+EYV+ KGIND+ L+K K +P K+NLI +NP E+ + Sbjct: 250 YWYHKTKSK-ITYEYVVWKGINDNKESVDALVKFCKHVPCKVNLIEYNPIDDGEFQQASP 308 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + I + + ++ +G + +R RG DI AACGQL Sbjct: 309 ESINAYIKALEANGIIAKVRHSRGKDIDAACGQL 342 >gi|251782933|ref|YP_002997236.1| ribosomal RNA large subunit methyltransferase N [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391563|dbj|BAH82022.1| radical SAM family enzyme [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323127736|gb|ADX25033.1| radical SAM superfamily protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 360 Score = 219 bits (557), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 131/368 (35%), Positives = 206/368 (55%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + RE+L + I + R +QIW W+Y + ++ F M++IS++ +L Sbjct: 2 KPSIYSLTREDL----IAWAIDHGQKKFRATQIWDWLYKKRVQSFDDMTNISKDFIAILK 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 ++F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 ENFCVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L + EI Q++L + D G ++ ++S++V Sbjct: 111 CNIGCTFCASGLIKKQRDLNSGEITAQIMLVQKYF-DERGQDE-----------RVSHVV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+ NV L +D GL+ R IT+STSG I E + V LA+S Sbjct: 159 VMGIGEPFDNYQNVMSFLRTINDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +NDLR+ ++ INR +PLE L A +Y +N RR+TFEY+ML +ND A L Sbjct: 219 LHAPNNDLRSSIMRINRSFPLEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQAQEL 277 Query: 303 IKILKGIP--AKINLIPFNP-WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 + K I + +NLIP+NP +Y S ++ + F + +K++G + +R G DI Sbjct: 278 ADLTKNIRKLSYVNLIPYNPVSEHDQYSRSPKERVSAFYDVLKKNGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|298208115|ref|YP_003716294.1| hypothetical protein CA2559_07736 [Croceibacter atlanticus HTCC2559] gi|83848036|gb|EAP85906.1| hypothetical protein CA2559_07736 [Croceibacter atlanticus HTCC2559] Length = 346 Score = 219 bits (557), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 132/366 (36%), Positives = 205/366 (56%), Gaps = 26/366 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ + + +E+L + + G R +Q+++W++ +G F+ M++IS+E R +L Sbjct: 5 KKDIRALSKEQLRDFFVSEGDKA----FRGNQVYEWLWNKGAHTFEEMTNISKETRDMLE 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +F I + + + S DGT K ++ + + +E+V IP SR T CVSSQVGCS Sbjct: 61 ANFVINHILVDQMQRSSDGTIKNAVK-----LHDGLTVESVLIPTASRTTACVSSQVGCS 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T K +RNL +EI QV+ D E + R +SNIV M Sbjct: 116 LDCKFCATSRLKRMRNLNPDEIYDQVVAI-----------DRESRLYHD--RPLSNIVFM 162 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAISL 243 GMGEPL N++NV KS+ + GL S RRIT+STSG VP I + EE+ LA+SL Sbjct: 163 GMGEPLMNYNNVLKSIEKITSEDGLGMSPRRITVSTSG-VPKIIKKMADEEVKFNLAVSL 221 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ +++R ++P N +PL+ L ++ ++ + ++IT+EYV+ K IND D L+ Sbjct: 222 HSAIDEVRTKIMPFNEHFPLKDLRESLEYWYAKT-GKQITYEYVVWKDINDRTEDIDALV 280 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K K +P+K+NLI +NP E+ + I + ++R+ + +R RG DI AACG Sbjct: 281 KFCKYVPSKVNLIEYNPIDDGEFQQAPDAAINAYVNALERNNITVTVRRSRGKDIDAACG 340 Query: 364 QLKSLS 369 QL + S Sbjct: 341 QLANKS 346 >gi|332664665|ref|YP_004447453.1| ribosomal RNA large subunit methyltransferase N [Haliscomenobacter hydrossis DSM 1100] gi|332333479|gb|AEE50580.1| Ribosomal RNA large subunit methyltransferase N [Haliscomenobacter hydrossis DSM 1100] Length = 343 Score = 218 bits (556), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 128/355 (36%), Positives = 198/355 (55%), Gaps = 26/355 (7%) Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75 ELEE ++G + R Q+++W++ +G+R F M+++S+ +R L F I I Sbjct: 10 ELEELFKEMG----EAKFRAKQVYEWLWQKGVRSFDAMTNLSKSLREKLAASFVI--NGI 63 Query: 76 VDEKI--SCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133 V++K+ S DGT K R G +E + +P+ R T+CVS QVGCSLTC FC T Sbjct: 64 VEDKVQRSADGTIKSRFRLHD---GHMIESVLIPVPDDKRFTVCVSCQVGCSLTCKFCAT 120 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 G VRNL A EI QV++ + + + G +SNIV MGMGEPL Sbjct: 121 GRMNRVRNLDAAEIYDQVVM-------------VNQQCLETFGHPLSNIVYMGMGEPLLA 167 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252 ++NV +S+ + GL S RRIT+ST+G I ++ ++ LA+SLHA + R+ Sbjct: 168 YNNVMESIERLTAPDGLHMSPRRITISTAGIAKMIKKLADDGCKTNLALSLHAADDLKRD 227 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312 L+PIN + L +L+DA ++ ++ RI++EY+ + +ND DA NL K+ + P + Sbjct: 228 ELMPINEQNNLAVLMDALEYFYRKTH-NRISYEYITFQNVNDGLDDAANLAKLCRRFPVR 286 Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 +N+I +NP YL S++ I F+ ++ + +R RG DI AACGQL + Sbjct: 287 VNIIEYNPIGDVPYLKSEEDRIDAFARYLREREITVTVRRSRGKDIDAACGQLAN 341 >gi|157364703|ref|YP_001471470.1| ribosomal RNA large subunit methyltransferase N [Thermotoga lettingae TMO] gi|205829915|sp|A8F8C2|RLMN_THELT RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|157315307|gb|ABV34406.1| radical SAM enzyme, Cfr family [Thermotoga lettingae TMO] Length = 343 Score = 218 bits (556), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 131/361 (36%), Positives = 202/361 (55%), Gaps = 30/361 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +++ M E+ + + ++G+ + R QI WIY + + F+ M+++S++ R LL ++ Sbjct: 2 NILSMTYEKFVQKIQELGLE----KYRADQILDWIYKKHVFVFEQMTNLSKQHRSLLREN 57 Query: 68 FSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 F I P+IV +++S D T K+L + IE+V + + T C+S+Q+GC + Sbjct: 58 FCIQIPKIVSKRVSSIDKTTKYLYE-----LSDGNTIESVLLFHEGYATACISTQIGCPV 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 CSFC TG VRNL A EI+ Q+L + + + NIV MG Sbjct: 113 KCSFCATGQSGFVRNLDAGEIVSQIL-----------------AIEKDSKQTVRNIVYMG 155 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 MGEPL N+DNV KS+ I D + RR+TLST G I ++ EE + + LAISLHA Sbjct: 156 MGEPLLNYDNVIKSIKILIDKKTKNIGIRRVTLSTVGIPEMILKLSEERLDLNLAISLHA 215 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +N+ R+ ++PINRKY ++ +I+A ++Y S+ RR+T EY+++K ND DA L K+ Sbjct: 216 STNEKRDQIIPINRKYSIQEIINAAKNYQERSD-RRLTIEYILIKEFNDFDEDARKLAKL 274 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L G+ +NLIP N + + I F E + SG + IR +G DI AACGQL Sbjct: 275 LNGLKVFVNLIPVNS-TFSNFEKPAKWKINRFKEILINSGIEAEIRYEKGADIEAACGQL 333 Query: 366 K 366 + Sbjct: 334 R 334 >gi|313894907|ref|ZP_07828467.1| 23S rRNA m2A2503 methyltransferase [Selenomonas sp. oral taxon 137 str. F0430] gi|312976588|gb|EFR42043.1| 23S rRNA m2A2503 methyltransferase [Selenomonas sp. oral taxon 137 str. F0430] Length = 346 Score = 218 bits (556), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 132/362 (36%), Positives = 197/362 (54%), Gaps = 26/362 (7%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 ++ GM EEL AL GIP R R +QI + IY RG F ++ + + +R L ++ Sbjct: 2 NIFGMTVEELRAALAPFGIP----RFRAAQIAEGIYRRGAVSFDAITSLPKSLRAQLAEN 57 Query: 68 FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 F+I P +V+ S DG T K L F ETV + ++C+S+Q GC++ Sbjct: 58 FTIERPTVVNRLHSADGATIKLLYAF-----ADGQTAETVLMRHPYGNSVCISTQAGCAM 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC + LVRNLT EI Q + + DF E G ++ IV+MG Sbjct: 113 GCAFCASTLHGLVRNLTRGEIAAQAIG----IADFLRQE----------GARVDTIVVMG 158 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 GEPL N+DNV +L + + L R +TLSTSG VP I R+ +E I + LAISLHA Sbjct: 159 SGEPLENYDNVVGALRLLHEDYVLGLGYRGMTLSTSGIVPGIERLADEGIPISLAISLHA 218 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +++LR+ ++P+NR+YPL ++ A RHY + RR+T+EY++++ +ND R+A L + Sbjct: 219 PTDELRSRIMPVNRRYPLADVLRAARHYAARTK-RRVTYEYILIRDVNDGVREAEQLAAL 277 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+ A +NLIP NP I F ++ ++ +R G DI AACGQL Sbjct: 278 LRDRLASVNLIPINPVAERSLHRPSSNAIRRFQRVLEERHITATLRREMGTDIRAACGQL 337 Query: 366 KS 367 ++ Sbjct: 338 RN 339 >gi|255533736|ref|YP_003094108.1| radical SAM enzyme, Cfr family [Pedobacter heparinus DSM 2366] gi|255346720|gb|ACU06046.1| radical SAM enzyme, Cfr family [Pedobacter heparinus DSM 2366] Length = 348 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 124/333 (37%), Positives = 186/333 (55%), Gaps = 20/333 (6%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93 R Q+++W++ + R F MS++ +++R L+ ++I E+ +IS D T K R Sbjct: 30 RAKQVYQWLWEKSARSFAEMSNLPKDLRAKLDAQYAINVVEVNKSQISNDHTIKNAFRLY 89 Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153 I +E V IP R T CVSSQVGCSLTC FC TG RNL A+EI QV+L Sbjct: 90 DGNI-----VEGVLIPMDDRMTACVSSQVGCSLTCKFCATGYMDRKRNLNADEIYDQVVL 144 Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213 I+ + ++NIV MGMGEPL N+ NV KS+ + GL+ S Sbjct: 145 -------------IDQQAKKNYNAPLTNIVYMGMGEPLLNYANVLKSIERITAPDGLNMS 191 Query: 214 KRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 +RIT+ST+G I ++G++ + LA+SLHA ++ RN ++PIN L+ L ++ ++ Sbjct: 192 YKRITVSTAGISKMIKKLGDDGVKFNLALSLHAANDKKRNEIMPINEHNSLKALAESLKY 251 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + +T+EY++ ND DA+ L K K +P K+NLI +NP +++ ++ Sbjct: 252 YFAKT-KNPVTYEYIVFNHFNDEIEDAMELAKFCKHVPCKVNLIEYNPIQFADFINAEGD 310 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I FS +K G ++ IR RG DI AACGQL Sbjct: 311 KIDAFSNYLKSQGITTNIRRSRGKDIDAACGQL 343 >gi|301167567|emb|CBW27150.1| conserved hypothetical protein [Bacteriovorax marinus SJ] Length = 366 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 131/365 (35%), Positives = 199/365 (54%), Gaps = 21/365 (5%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 S EEL L + G Q+ +I++ +Y R +F+ + +S+ ++ Sbjct: 21 HSFYNQSLEELSHTLHESGFKQKSA----DEIFRLVYKRFNPNFEAVDTLSRRTIDFISN 76 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 H+ P+IV + + D T K+L+ + ++E+V IP + T+C+SSQVGC++ Sbjct: 77 HYRFDLPKIVKVQNADDNTVKFLVE-----LADGNQVESVLIPFAKKYTICLSSQVGCAM 131 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 CSFC+TG Q L RNL A EI+ Q ++A L + E + P NIV MG Sbjct: 132 KCSFCFTGLQGLKRNLEASEIIGQYIVAYKWLRE----NRPEKIASP-------NIVFMG 180 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 GEPL NFD VKK++ I + GL R+ITLST+G++P + R E + LA+SLH+ Sbjct: 181 QGEPLHNFDQVKKAIEIFLTTEGLHLGFRQITLSTAGYLPGLERFSELPNINLALSLHSP 240 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ RN L+P+N++Y LE L + L + IT+EY+++K +ND D L K L Sbjct: 241 IDEDRNKLIPLNKRYSLEKLFEKLDQIKLLKR-QFITYEYLLIKDLNDRDEDITLLNKWL 299 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 A IN+IPFN +PG Y + F ++R G + +RT +G DILAACGQL Sbjct: 300 GQRRAIINIIPFNEFPGAPYKRPLTSKVNEFKTKLERLGLTVKVRTTKGSDILAACGQLN 359 Query: 367 SLSKR 371 +L + Sbjct: 360 TLQSK 364 >gi|320530185|ref|ZP_08031255.1| radical SAM enzyme, Cfr family [Selenomonas artemidis F0399] gi|320137618|gb|EFW29530.1| radical SAM enzyme, Cfr family [Selenomonas artemidis F0399] Length = 346 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 133/362 (36%), Positives = 197/362 (54%), Gaps = 26/362 (7%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 ++ GM EEL AL GIP R R +QI + IY RG F ++ + + +R L ++ Sbjct: 2 NIFGMTVEELRAALAPFGIP----RFRAAQIAEGIYRRGAVSFDAITSLPKSLRAQLAEN 57 Query: 68 FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 F+I P +V+ S DG T K L F ETV + ++C+S+Q GC++ Sbjct: 58 FTIERPTVVNRLHSADGATIKLLYAF-----ADGQTAETVLMRHPYGNSVCISTQAGCAM 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC + LVRNLT EI Q + + DF E G ++ IV+MG Sbjct: 113 GCAFCASTLHGLVRNLTRGEIAAQAIG----IADFLRQE----------GARVDTIVVMG 158 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 GEPL N+DNV +L + + L R +TLSTSG VP I R+ +E I + L+ISLHA Sbjct: 159 SGEPLENYDNVVGALRLLHEDYVLGLGYRGMTLSTSGIVPGIERLADEGIPISLSISLHA 218 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +++LR+ ++P+NR+YPL ++ A RHY + RRIT+EY++++ +ND R A L + Sbjct: 219 PTDELRSRIMPVNRRYPLADVMRAARHY-AVRTKRRITYEYILIRDVNDGVRAAEQLAAL 277 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G A +NLIP NP I F ++ ++ +R G DI AACGQL Sbjct: 278 LRGRLASVNLIPINPVAERNLHRPSSNVIRRFQRTLEERHITATLRREMGTDIQAACGQL 337 Query: 366 KS 367 ++ Sbjct: 338 RN 339 >gi|317121759|ref|YP_004101762.1| 23S rRNA m(2)A-2503 methyltransferase [Thermaerobacter marianensis DSM 12885] gi|315591739|gb|ADU51035.1| 23S rRNA m(2)A-2503 methyltransferase [Thermaerobacter marianensis DSM 12885] Length = 448 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 128/358 (35%), Positives = 198/358 (55%), Gaps = 26/358 (7%) Query: 11 GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70 G++ EEL L G P R QI+ W++ RG+ F M+D+ +++R L Sbjct: 103 GLLPEELGRVLSAWGEPA----YRGRQIFAWLHRRGVTRFAEMTDLPKDLRRRLEALGDP 158 Query: 71 IYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129 + P + ++ DGTRK+LL + IETV + + +LCVSSQVGC++ C Sbjct: 159 VVPAVRRLQVDPQDGTRKYLLELEDGQL-----IETVLMRHRYGLSLCVSSQVGCAMGCR 213 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 FC + LVRNLTA E+ Q+L+ L + G+++S++V+MG+GE Sbjct: 214 FCASTLGGLVRNLTAAEMAGQLLVVNRDLAER--------------GQRVSHVVVMGIGE 259 Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248 PL N D + L +A G S R +T+STSG VP I ++ + + LA+SLHA ++ Sbjct: 260 PLQNLDATLQFLRVAHHPQGAGISYRHMTVSTSGLVPRIRQLAHAGLPITLAVSLHAPND 319 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 LR+ L+P+NR++P+ L+DACR Y + RRITFEYV+++ +ND P A L ++ G Sbjct: 320 ALRSWLMPVNRRWPIAELMDACREYVERTG-RRITFEYVLIEDVNDRPEHAAELADLVAG 378 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + +NLIP+NP + + + F ++R G + +R G I AACGQL+ Sbjct: 379 LNGHVNLIPWNPVSERPFRAPSPERVQAFVAALRRRGVNVTVRRELGQRIEAACGQLR 436 >gi|87308293|ref|ZP_01090434.1| hypothetical protein DSM3645_12021 [Blastopirellula marina DSM 3645] gi|87288850|gb|EAQ80743.1| hypothetical protein DSM3645_12021 [Blastopirellula marina DSM 3645] Length = 351 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 132/369 (35%), Positives = 199/369 (53%), Gaps = 32/369 (8%) Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76 L+ +++ G+P + R QI WI + F+ M+++ + +R L + + EI Sbjct: 14 LQALVVQWGLP----KFRAQQIRSWIVENRAQSFEDMANLPKPLRSQLAEKAQLWSTEIA 69 Query: 77 DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136 + DGT K LL+ GG IE V + + R T+C+S+QVGC++ C FC +G Sbjct: 70 RHTTAADGTEKLLLQLHD---GG--RIECVLLRDGDRRTICISTQVGCAMGCVFCASGLD 124 Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196 + RNLT EI+ Q+L + LL VG ++S+IV+MGMGEPL N D Sbjct: 125 GVERNLTVGEIIEQMLRLQRLL---------------PVGERLSHIVVMGMGEPLANVDR 169 Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILV 255 + +L AS GL S RRIT+ST G P I ++ + + LA+SLHA + LRN +V Sbjct: 170 LLSALDFASSEEGLGISHRRITISTVGLPPAIRKLADRDSRYHLAVSLHAPDDQLRNQIV 229 Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINL 315 P N+ + +++A HY +S RR+TFEYV+L +ND P A L K+L+G PA +N+ Sbjct: 230 PTNKNIGIHAILEAADHYFEIS-GRRLTFEYVLLAELNDQPEHAHRLAKLLRGRPALLNI 288 Query: 316 IPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKV 375 IP+NP G Y ++ F ++ +G + R +G I AACGQL+ Sbjct: 289 IPYNPVAGLPYRTPSKEAQHAFRAILEGAGLTVKFRQKKGDKINAACGQLRR------NT 342 Query: 376 PRQEMQITG 384 P +QI+G Sbjct: 343 PENLVQISG 351 >gi|149010606|ref|ZP_01831977.1| hypothetical protein CGSSp19BS75_04607 [Streptococcus pneumoniae SP19-BS75] gi|147765087|gb|EDK72016.1| hypothetical protein CGSSp19BS75_04607 [Streptococcus pneumoniae SP19-BS75] Length = 361 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 130/368 (35%), Positives = 213/368 (57%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLPHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI+ Q++L + D G ++ +IS+IV Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RISHIV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N++NV + +D G++ R IT+STSG I +E + V LA+S Sbjct: 159 VMGIGEPFDNYNNVLNFVCTINDDKGMAIGARHITISTSGLAHKIRDFADEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ INR +P+E L A +Y +N RR+TFEY+ML +ND AL L Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++LK I + +NLIP+NP +Y S ++ ++ F + +K+ G + +R G DI Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|288924769|ref|ZP_06418706.1| radical SAM enzyme, Cfr family [Prevotella buccae D17] gi|288338556|gb|EFC76905.1| radical SAM enzyme, Cfr family [Prevotella buccae D17] Length = 358 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 131/375 (34%), Positives = 204/375 (54%), Gaps = 30/375 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SL+G+ EL++ ++G+P Q+ KW+Y + ++ M++IS+ R L Sbjct: 4 KTSLLGLSLAELKDVAKRLGMPA----FTGGQMAKWLYGQHVKSIDEMTNISKANREKLA 59 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVE-----IETVYIPEKSRGTLCVSS 120 H++I +DE+ S DGT K+L +G E +ETVYIP+K R TLCVS Sbjct: 60 GHYTIGCASPIDEQRSKDGTVKYLFPVTTTAVGENREAPVMFVETVYIPDKDRATLCVSC 119 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC + C FC TG Q NL+ +IL QV +P V ++ Sbjct: 120 QVGCKMNCLFCQTGKQGFEGNLSVADILNQVY------------------SLPEVD-NLT 160 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 NIV MG GEP+ N DNV ++ I + G ++S +RIT+S+ G + R EE +A Sbjct: 161 NIVFMGQGEPMDNLDNVLRATEILTADYGWAWSPKRITVSSVGVKNKLRRFLEESDCHVA 220 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 IS+H+ + R L+P R +E +++ ++Y S+ RR++FEY++ G+NDS A Sbjct: 221 ISMHSPLPEQRAELMPAQRGMGIEEVVELLKNYD-FSHQRRLSFEYIVFGGVNDSNAHAR 279 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 ++++LKG+ +INLI F+ PG +++K + + + G + IR RG DI A Sbjct: 280 EIVRLLKGLDCRINLIRFHQIPGVALHGAEEKRMEELRDYLTAHGVFTTIRASRGEDIFA 339 Query: 361 ACGQLKSLSKRIPKV 375 ACG L S SK+I ++ Sbjct: 340 ACGLL-STSKKIEEL 353 >gi|125623071|ref|YP_001031554.1| hypothetical protein llmg_0194 [Lactococcus lactis subsp. cremoris MG1363] gi|205829781|sp|A2RHR3|RLMN_LACLM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|124491879|emb|CAL96800.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris MG1363] gi|300069818|gb|ADJ59218.1| ribosomal RNA large subunit methyltransferase N [Lactococcus lactis subsp. cremoris NZ9000] Length = 365 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 134/374 (35%), Positives = 216/374 (57%), Gaps = 33/374 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 S+ G+ R++L E ++ G + R +Q+W W+Y + ++ F+ MS++S LN+ Sbjct: 12 SIYGLTRDQLIEWAIENG----EKKFRATQVWDWLYRKRVQSFEEMSNLSAVFIDKLNEA 67 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F + E V + S DGT K+L P + V IETV + + ++CV++QVGC++ Sbjct: 68 FILNPLEQVVVQESADGTVKYLFMLPDK-----VMIETVLMRQSYGLSVCVTTQVGCNMG 122 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C+FC +G K R++TA EI+ Q++L + D G+ ++S++V+MG+ Sbjct: 123 CTFCASGILKKERDVTAGEIVSQIMLVQKYF-------DERGL-----DERVSHVVVMGI 170 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE----EIGVMLAISL 243 GEP N++++ L + +D GL+ R IT+ST GF+P A++ E + + LAISL Sbjct: 171 GEPFDNYEHLMNFLRVINDDNGLAIGARHITVSTCGFMP--AKIKEFAHDNLQINLAISL 228 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +N+LR L+ I R PLE L +A +Y +N RR+T+EY+ML G NDSP A L Sbjct: 229 HAPNNELRTSLMRITRNAPLEKLFEAIDYYTETTN-RRVTYEYIMLSGENDSPEIAQQLA 287 Query: 304 KILKGIP--AKINLIPFNP-WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 ++K + +NLIP+NP +Y S + + F + +K++G + +R G DI A Sbjct: 288 DLIKSRNKLSYVNLIPYNPVAEHIKYERSTKDNTAKFYDVLKKNGINCVVRQEHGTDIDA 347 Query: 361 ACGQLKSLSKRIPK 374 ACGQL+ SK+I K Sbjct: 348 ACGQLR--SKQIKK 359 >gi|225850129|ref|YP_002730363.1| ribosomal RNA large subunit methyltransferase N [Persephonella marina EX-H1] gi|225644821|gb|ACO03007.1| radical SAM enzyme, Cfr family [Persephonella marina EX-H1] Length = 353 Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 127/341 (37%), Positives = 197/341 (57%), Gaps = 27/341 (7%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD-EKISCDGTRKWLL 90 + R QI KWIY + + + M+D+S+EVR+ L ++ + E+V E+ S DG+ K+L Sbjct: 23 KFRAKQIAKWIYNKKVNSYDEMTDLSKEVRNYLKENTKLNVLELVTFERSSQDGSIKFLW 82 Query: 91 RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150 R G VE +V+IPE+ TLCVS+QVGC++ C FC+T L+RNLT EI+ Q Sbjct: 83 RLED---GHTVE--SVFIPERGHNTLCVSTQVGCAVGCKFCFTTKDGLIRNLTTAEIVDQ 137 Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210 + ++ +G P +ISN+V MGMGEPL N++NVK+S+ I +D L Sbjct: 138 YIQSQIFVG-------------PE--NRISNVVYMGMGEPLANYENVKRSVQILTDDRML 182 Query: 211 SFSKRRITLSTSGFVPNIARVGEEIG---VMLAISLHAVSNDLRNILVPINRKYPLEMLI 267 S R+IT+S+SG + I ++ ++ V LA+SL+A R ++PI+ LE L+ Sbjct: 183 GLSNRKITISSSGIIHQIKKMYDDPSFPQVRLAVSLNASDQKTRERIMPISETNSLEDLM 242 Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPWPGCE 325 P + RI EYV++K IND P DA L +++ K+NLIPFNP+PG + Sbjct: 243 KTLNRLP-VKTGFRIMLEYVLIKDINDRPEDAHRLARLIGKNKKRYKVNLIPFNPYPGSD 301 Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + +++ + F + + + + +R +G DI AACGQL+ Sbjct: 302 FERPEKERVDQFHKILWQYNIGAFVRWSKGSDISAACGQLR 342 >gi|260063739|ref|YP_003196819.1| radical SAM enzyme, Cfr family protein [Robiginitalea biformata HTCC2501] gi|88783184|gb|EAR14357.1| radical SAM enzyme, Cfr family protein [Robiginitalea biformata HTCC2501] Length = 347 Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 128/363 (35%), Positives = 198/363 (54%), Gaps = 24/363 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ + + RE+L + G+ R +Q+++W++ +G DF M+++S ++R L Sbjct: 6 KKDIRALSREQLRDFFESRGMEA----FRGNQVYEWLWKKGAHDFDAMTNLSLDLREQLA 61 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F+I + E+ + S DGT K +R + +E+V IP ++R T CVSSQVGCS Sbjct: 62 AEFTINHIEVDRMQRSADGTVKNAVRLHDGLV-----VESVLIPTENRTTACVSSQVGCS 116 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T K +RNL +EI QV++ I+ GR +SNIV M Sbjct: 117 LDCKFCATARLKRMRNLNPDEIYDQVVV-------------IDRQSRLYFGRPLSNIVFM 163 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 GMGEPL N+ N+ K++ + GL S RRIT+STSG I R+ EE LA+SLH Sbjct: 164 GMGEPLMNYPNMMKAIDKITSEEGLGMSPRRITVSTSGVPKMIRRMAEEGPRFNLAVSLH 223 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 + + R+ ++P N +PL+ L DA ++ R+T+EYV+ +GIND P D L+ Sbjct: 224 SAIDSTRSTIMPFNETFPLDDLRDAIVYWYE-KTGNRVTYEYVVWEGINDGPEDVAALLA 282 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 + P K+NLI +NP + + + + + ++ +G + +R RG DI AACGQ Sbjct: 283 FCRAAPCKVNLIEYNPIGDDAFRQASEPALQAYINALEGAGITVTVRRSRGKDIDAACGQ 342 Query: 365 LKS 367 L + Sbjct: 343 LAN 345 >gi|313890464|ref|ZP_07824093.1| 23S rRNA m2A2503 methyltransferase [Streptococcus pseudoporcinus SPIN 20026] gi|313121166|gb|EFR44276.1| 23S rRNA m2A2503 methyltransferase [Streptococcus pseudoporcinus SPIN 20026] Length = 361 Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 132/368 (35%), Positives = 207/368 (56%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+EL + I + R +QIW W+Y + ++ F+ M++IS++ LLN Sbjct: 2 KPSIYSLTRDEL----IDWAIANGQKKFRATQIWDWLYKKRVQSFEEMTNISKDFIALLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 EKFCLNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L + EI Q++L + D G ++ ++S++V Sbjct: 111 CNIGCTFCASGLIKKQRDLNSGEITAQIMLVQKYF-DERGQDE-----------RVSHVV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+ NV L +D GL+ R IT+STSG I E + V LA+S Sbjct: 159 VMGIGEPFDNYKNVMTFLRTINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ INR +PLE L A +Y +N RR+TFEY+ML +ND A L Sbjct: 219 LHAPNNELRSSIMRINRSFPLEKLFTAIEYYIETTN-RRVTFEYIMLNEVNDGVEQAKEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 + K I + +NLIP+NP +Y S ++ + F + +K++G + +R G DI Sbjct: 278 ADLTKNIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYDILKKNGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|257792840|ref|YP_003183446.1| radical SAM enzyme, Cfr family [Eggerthella lenta DSM 2243] gi|257476737|gb|ACV57057.1| radical SAM enzyme, Cfr family [Eggerthella lenta DSM 2243] Length = 353 Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 127/358 (35%), Positives = 193/358 (53%), Gaps = 30/358 (8%) Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75 EL + ++G P R Q+ +W+Y R + M+++ +R L + F + P + Sbjct: 20 ELASVMKELGQPA----FRAQQLQEWLYQRHASSYDEMTNLPGSLRATLAERFPLTMPTV 75 Query: 76 VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS--RGTLCVSSQVGCSLTCSFCYT 133 VD +IS DGTRK+L+ F + +ETV IP ++ R T+C S+Q GC + C+FC T Sbjct: 76 VDRQISKDGTRKYLVEF-----DDGIRVETVGIPSRNGDRLTVCFSTQAGCPIACAFCAT 130 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 G + RNL EI+ QVL+ + ED+ G++++N V MG GEP N Sbjct: 131 GQEGFARNLIPGEIVDQVLIVQ---------EDM--------GKRVTNAVGMGQGEPFLN 173 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRN 252 +DN +L I + GL R I++ST G +P + R GE LA+SLHA +R+ Sbjct: 174 YDNTMAALRILNHKKGLEIGARHISVSTCGILPGLERFSGEPEQFTLAVSLHAARQPIRD 233 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312 +++P +Y L L +A ++Y +N RRIT EY+M++G+ND+P D L K + Sbjct: 234 LIMPNVARYKLPSLKEALQNYVAKTN-RRITLEYIMIEGVNDAPVDLKALQKFCSNLLCH 292 Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 +NLIP N G E+ S + I + I + G + +R RG DI ACGQLK+ K Sbjct: 293 VNLIPINAIEGSEFQPSSPETINLWLSEISKKGTEATLRDSRGSDISGACGQLKNTFK 350 >gi|323490277|ref|ZP_08095492.1| ribosomal RNA large subunit methyltransferase N [Planococcus donghaensis MPA1U2] gi|323395947|gb|EGA88778.1| ribosomal RNA large subunit methyltransferase N [Planococcus donghaensis MPA1U2] Length = 357 Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 134/377 (35%), Positives = 218/377 (57%), Gaps = 28/377 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ G+ ++L+E L+ G + R Q+W W+Y++ + +F M+++S+E LL Sbjct: 2 KNSIYGLTIDQLKEWFLENG----QKKYRAEQVWDWLYIKRVTEFAEMNNLSKECIQLLE 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +F+I + ++ S DGT K+L + + IETV + K ++CV++QVGC+ Sbjct: 58 DNFAIRTLKETVKQESADGTIKFLFQMQDGNL-----IETVLMRFKYGNSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + CSFC +G K R+L A EI+ Q++ ++ D E+ ++S+IV+M Sbjct: 113 IGCSFCASGLLKKSRDLNAGEIVEQIMQVQAHF-DTQQKEE-----------RVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+ N+ L + + GL+ R IT+STSG VP I +E + V LAIS+H Sbjct: 161 GIGEPFDNYTNLMDFLKVVNSQKGLAIGARHITVSTSGIVPKIYDYADEGLQVNLAISIH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR ++ IN+ YP+E L+ + +Y SN RRITFEY++L+ +ND +A L K Sbjct: 221 APTNELRTRIMKINKAYPIEKLMASIDYYLEKSN-RRITFEYILLRDVNDHVEEANQLAK 279 Query: 305 IL--KGIPAKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +L K + +NLIP+N +Y S + I F + +K+ G + +R +G DI AA Sbjct: 280 LLEDKRHLSYVNLIPYNSVDEHDQYQQSTPEAISAFYDALKKKGINCGVRHEQGADIDAA 339 Query: 362 CGQLKSLSKRIPKVPRQ 378 CGQL+ SK+I K ++ Sbjct: 340 CGQLR--SKQIKKDKKE 354 >gi|163786382|ref|ZP_02180830.1| hypothetical protein FBALC1_14392 [Flavobacteriales bacterium ALC-1] gi|159878242|gb|EDP72298.1| hypothetical protein FBALC1_14392 [Flavobacteriales bacterium ALC-1] Length = 346 Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 128/367 (34%), Positives = 205/367 (55%), Gaps = 24/367 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +KK+ + + +E+L + +K G R +Q+++W++ + F+ M++IS E R + Sbjct: 3 VKKKDIRALTKEQLRDFFVKQGDKA----FRGNQVYEWLWQKSAHSFEDMTNISLETRQM 58 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +F I + ++ + S DGT K +R I +E+V IP +R T CVSSQVG Sbjct: 59 LEANFVINHIKVDQMQRSSDGTIKNAVRLHDDLI-----VESVLIPTATRTTACVSSQVG 113 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 CSL C FC T K +RNL +EI QV+ D E + + R +SNIV Sbjct: 114 CSLDCKFCATARLKRMRNLNPDEIYDQVVAI-----------DNESRLYHN--RPLSNIV 160 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 MGMGEPL N++NV K++ + GL S +RI +STSG I ++ ++ + LA+S Sbjct: 161 FMGMGEPLMNYNNVLKAIDKITSPEGLGMSPKRIVVSTSGVPKMIKKMADDKVKFKLAVS 220 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LH+ +D+R ++P N +PL L +A +++ + RIT+EYV+ GIND +D L Sbjct: 221 LHSAIDDVRTSIMPFNATFPLNDLREALQYWYA-ATKNRITYEYVVWDGINDKRKDVDAL 279 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++ K P+K+NLI +NP E+ ++ K + + ++ + + +R RG DI AAC Sbjct: 280 VEFCKFAPSKVNLIEYNPIDDGEFQQANSKALDMYVNVLEANNITVTVRRSRGKDIDAAC 339 Query: 363 GQLKSLS 369 GQL + S Sbjct: 340 GQLANKS 346 >gi|15644462|ref|NP_229514.1| ribosomal RNA large subunit methyltransferase N [Thermotoga maritima MSB8] gi|81553682|sp|Q9X240|RLMN_THEMA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|4982292|gb|AAD36781.1|AE001811_1 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 343 Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 135/363 (37%), Positives = 207/363 (57%), Gaps = 32/363 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++L+ + EEL + +G+ R R QI W++ + + +F M+++S++ R LL + Sbjct: 2 KNLLDLSYEELVTEITNLGLE----RYRADQILDWVFDKKVNNFDEMTNLSKKHRALLKE 57 Query: 67 HFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 HFSI + +++D+K+S DGT K+L G +E ++ P+ R T C+S+QVGC Sbjct: 58 HFSISFLKLLDKKVSRIDGTTKFLWELED---GNTIESVMLFHPD--RITACISTQVGCP 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG VRNLT EI+ Q+L E E +KI N+V M Sbjct: 113 VKCIFCATGMSGFVRNLTTGEIVAQIL----------SMEKEE-------KKKIGNVVYM 155 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 GMGEPL N++N KS+ I + + RRIT+ST G I ++ EE + V LA+SLH Sbjct: 156 GMGEPLLNYENTIKSIRILNHKKMGNIGIRRITISTVGIPDRIIQLAEEGLDVKLALSLH 215 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N R+ LVP+N+KY +E +++A + Y R+T EYV+++GIND DA L + Sbjct: 216 APTNFKRDQLVPLNKKYSIEEILNAVKIYQR-KTGNRVTIEYVLIRGINDEISDAKKLAE 274 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKD-IVTFSECIKRSGYSSPIRTPRGLDILAACG 363 IL+ + +NLIP N P E L ++ ++TF + +G + IR +G DI AACG Sbjct: 275 ILRNMKVFVNLIPVN--PTVEGLRRPSRERLLTFKRILLENGIEAEIRREKGTDIEAACG 332 Query: 364 QLK 366 QL+ Sbjct: 333 QLR 335 >gi|210617186|ref|ZP_03291453.1| hypothetical protein CLONEX_03675 [Clostridium nexile DSM 1787] gi|210149461|gb|EEA80470.1| hypothetical protein CLONEX_03675 [Clostridium nexile DSM 1787] Length = 345 Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 123/365 (33%), Positives = 202/365 (55%), Gaps = 29/365 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K+ + EEL++ + +G R Q+++W++V+ F+ M+++S+ +R Sbjct: 1 MEKKDIRSYTFEELKQEMEHLGEKS----FRAKQVYEWLHVKLADSFEEMTNLSKALREK 56 Query: 64 LNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L+ + I ++++ + S DGT K+L C+ +E+V + K ++C+SSQV Sbjct: 57 LDAAYEIAPVKMLERQESKLDGTNKFLF-----CLQDGHVVESVLMKYKHGNSVCISSQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC + L RNL A E+L Q+ + + G+ ++SN+ Sbjct: 112 GCRMGCKFCASTIGGLERNLKASEMLGQIYQIQKISGE-----------------RVSNV 154 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 V+MG GEP+ N+DN K + I +D GL S+R IT+ST G VPN+ R+ EE + + LA+ Sbjct: 155 VVMGTGEPMDNYDNFLKFIHILTDEHGLHISQRNITVSTCGIVPNMKRLAEEKLQITLAL 214 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH + + R +L+P+ KY L ++ AC +Y RR+TFEY ++ G+ND DA Sbjct: 215 SLHGSTQEKRKVLMPVANKYELSEVLAACDYYFE-KTGRRVTFEYSLVHGVNDKEEDAAE 273 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 LI ILK +NLIP NP + +K+ + F +++SG + IR G DI A Sbjct: 274 LIHILKHRNCHLNLIPVNPIKERTFEKPSKKNAMNFKNKLEKSGINVTIRREMGSDIDGA 333 Query: 362 CGQLK 366 CGQL+ Sbjct: 334 CGQLR 338 >gi|148989849|ref|ZP_01821143.1| hypothetical protein CGSSp6BS73_01643 [Streptococcus pneumoniae SP6-BS73] gi|147924791|gb|EDK75875.1| hypothetical protein CGSSp6BS73_01643 [Streptococcus pneumoniae SP6-BS73] Length = 361 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 127/368 (34%), Positives = 209/368 (56%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI+ Q++L + + E ++S+IV Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFAERGQDE------------RVSHIV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N++NV +D G++ R I +STSG I +E + V LA+S Sbjct: 159 VMGIGEPFDNYNNVLNFFRTINDDKGMAIGARHIMISTSGLAHKIRDFADEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ INR +P+E L A +Y +N RR+TFEY+ML +ND AL L Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++LK I + +NLIP+NP +Y S ++ ++ F + +K+ G + +R G DI Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|124007524|ref|ZP_01692229.1| radical SAM enzyme, Cfr family [Microscilla marina ATCC 23134] gi|123987007|gb|EAY26763.1| radical SAM enzyme, Cfr family [Microscilla marina ATCC 23134] Length = 350 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 123/335 (36%), Positives = 187/335 (55%), Gaps = 22/335 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI+ W++ + F+ M+++S ++R +L HF I + ++IS D T K + Sbjct: 30 FRAKQIYAWLWQKSANSFEEMTNLSLKLREMLQAHFDITALTVDQQQISNDQTIKSTFKL 89 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 I IE V IP K R T CVSSQVGCSLTC FC TG RNL EI QV+ Sbjct: 90 YDNHI-----IEGVLIPAKDRMTACVSSQVGCSLTCKFCATGYMSRKRNLEPGEIYDQVV 144 Query: 153 -LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 +AR ++ + ++NIV MGMGEPL N+ NV KS+ + GL+ Sbjct: 145 AIARQAEENYE--------------QPLTNIVYMGMGEPLLNYANVLKSVEHITSPEGLN 190 Query: 212 FSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 S +RIT+ST+G I ++G+ E+ LA+SLHA +++ RN ++PIN L L DA Sbjct: 191 MSPKRITISTAGIAKMIRKLGDDEVKFNLALSLHAANDEKRNEIMPINESNTLVALRDAL 250 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 ++Y + R+T+EY++ NDS +DA L + + +P K+N+I +NP +++ + Sbjct: 251 KYYFQKTK-NRVTYEYIVFHNFNDSLKDAEELYRFTRHLPCKVNIIEYNPIAEADFVNTK 309 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + + F++ ++ G +R RG DI AACGQL Sbjct: 310 EDKLAKFAKYLEGKGVIVNVRRSRGKDIDAACGQL 344 >gi|224023722|ref|ZP_03642088.1| hypothetical protein BACCOPRO_00438 [Bacteroides coprophilus DSM 18228] gi|224016944|gb|EEF74956.1| hypothetical protein BACCOPRO_00438 [Bacteroides coprophilus DSM 18228] Length = 350 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 128/369 (34%), Positives = 197/369 (53%), Gaps = 29/369 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K L+G +EL + +L +G+P + QI W+Y R + M+++S + R L Sbjct: 5 KAPLLGKTLDELTQIVLDLGMP----KFTAGQIASWLYGRKVASIDEMTNLSVKNRERLK 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + + V E S DGT K+L R P G +E+VYIP+ R TLCVSSQVGC Sbjct: 61 ECYEVGATAPVHEMRSVDGTVKYLFRTPE----GDY-VESVYIPDADRATLCVSSQVGCK 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q +LTA +IL Q+ IP ++N+V M Sbjct: 116 MNCKFCMTGKQGYTNSLTAAQILNQIY------------------SIPERD-TLTNVVFM 156 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEP N D V ++L I + S G ++S +RIT+S+ G + R +E LAISLH+ Sbjct: 157 GMGEPFDNLDEVLRALEILTASYGYAWSPKRITVSSVGLRKGLRRFLDESDCHLAISLHS 216 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 R L+P + + + ++D R Y S RR++FEY++ KG+NDS A L+++ Sbjct: 217 PFPAQRQELMPAEKAFSIVEIVDILRQYD-FSKQRRLSFEYIVFKGVNDSLIYAKELVRL 275 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G+ ++NLI F+ P + +D + ++ F + + + G + IR RG DI AACG L Sbjct: 276 LRGLDCRMNLIRFHAIPNVDLEGADMETMLAFRDYLTQHGLFATIRASRGEDIFAACGML 335 Query: 366 KSLSKRIPK 374 + ++ K Sbjct: 336 STAKQQANK 344 >gi|332976466|gb|EGK13312.1| cfr family radical SAM enzyme [Desmospora sp. 8437] Length = 350 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 124/337 (36%), Positives = 192/337 (56%), Gaps = 23/337 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR- 91 R Q+ W+YV+ + F M+++S+ +R L + F + E + + S DGT K+L + Sbjct: 25 FRADQVMNWLYVKRVPSFADMTNLSRGLRERLERDFQLKPLETITVRQSADGTIKFLFQL 84 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 F I ETV + ++CV++QVGC + C+FC + L R+L A E++ QV Sbjct: 85 FDGHAI------ETVIMRHNYGNSVCVTTQVGCRVGCTFCASTLGGLKRDLKAGEVVAQV 138 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 L A+ L + G ++ ++V+MG+GEP N+D + + + D GL+ Sbjct: 139 LEAQRYLDRW--------------GERVHSVVIMGIGEPFENYDASVQFMRVIQDEKGLN 184 Query: 212 FSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 ++RRIT+STSG VP+I R EE + V LAISLHA + LR L+P++ +YPLE L+ AC Sbjct: 185 LAQRRITVSTSGIVPSIYRFAEEGLQVGLAISLHAPNQALRKRLMPVSYRYPLEELLAAC 244 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 R+Y RRIT+EY ++ G ND+P A L ++L+G + INLIP N P Y + Sbjct: 245 RYYVQ-KTGRRITYEYALIGGKNDAPEHAHELGRLLEGSGSLINLIPVNHVPERNYTRTP 303 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 + I F + ++ ++ IR G DI AACGQL++ Sbjct: 304 RNRIFKFRDILQSYNLNTTIRREHGSDIEAACGQLRA 340 >gi|149003387|ref|ZP_01828276.1| hypothetical protein CGSSp14BS69_05262 [Streptococcus pneumoniae SP14-BS69] gi|303255819|ref|ZP_07341860.1| hypothetical protein CGSSpBS455_10019 [Streptococcus pneumoniae BS455] gi|303260232|ref|ZP_07346203.1| hypothetical protein CGSSp9vBS293_03308 [Streptococcus pneumoniae SP-BS293] gi|303261439|ref|ZP_07347387.1| hypothetical protein CGSSp14BS292_08890 [Streptococcus pneumoniae SP14-BS292] gi|303264106|ref|ZP_07350027.1| hypothetical protein CGSSpBS397_05867 [Streptococcus pneumoniae BS397] gi|303266283|ref|ZP_07352174.1| hypothetical protein CGSSpBS457_03820 [Streptococcus pneumoniae BS457] gi|303268722|ref|ZP_07354512.1| hypothetical protein CGSSpBS458_06844 [Streptococcus pneumoniae BS458] gi|147758570|gb|EDK65568.1| hypothetical protein CGSSp14BS69_05262 [Streptococcus pneumoniae SP14-BS69] gi|302597203|gb|EFL64308.1| hypothetical protein CGSSpBS455_10019 [Streptococcus pneumoniae BS455] gi|302637573|gb|EFL68060.1| hypothetical protein CGSSp14BS292_08890 [Streptococcus pneumoniae SP14-BS292] gi|302638556|gb|EFL69020.1| hypothetical protein CGSSpBS293_03308 [Streptococcus pneumoniae SP-BS293] gi|302641782|gb|EFL72139.1| hypothetical protein CGSSpBS458_06844 [Streptococcus pneumoniae BS458] gi|302644213|gb|EFL74469.1| hypothetical protein CGSSpBS457_03820 [Streptococcus pneumoniae BS457] gi|302646511|gb|EFL76737.1| hypothetical protein CGSSpBS397_05867 [Streptococcus pneumoniae BS397] Length = 361 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 128/368 (34%), Positives = 212/368 (57%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ ++ + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLVHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI+ Q++L + D G ++ ++S+IV Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N++NV +D G++ R IT+S SG I +E + V LA+S Sbjct: 159 VMGIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSISGLAHKIRDFADEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ INR +P+E L A +Y +N RR+TFEY+ML +ND AL L Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++LK I + +NLIP+NP +Y S ++ ++ F + +K+ G + +R G DI Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|227824650|ref|ZP_03989482.1| ribosomal RNA large subunit methyltransferase N [Acidaminococcus sp. D21] gi|226905149|gb|EEH91067.1| ribosomal RNA large subunit methyltransferase N [Acidaminococcus sp. D21] Length = 352 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 130/370 (35%), Positives = 203/370 (54%), Gaps = 32/370 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K+ ++G+ E++++ L +G+ + R Q+++WIY +G F+ M+++S+E R L Sbjct: 1 MTKKEILGLTLEQMQDEFLALGLK----KFRAEQVFRWIYEKGATTFEEMTNLSKENRSL 56 Query: 64 LNQHFSIIYP--EIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 L +SI+ +++ S D T K LL + +ETV + + C+SS Sbjct: 57 LEGTYSILSGAVKVLRTYDSADRLTHKVLL-----GLSDGASVETVLMHHDYGYSACLSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC++ C+FC +G +RNLTA EIL Q+ + +++P G ++S Sbjct: 112 QVGCAMNCTFCASGLHGFMRNLTAGEILAQLYY-------------FDHVLLPK-GERVS 157 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI---ARVGEEIGV 237 IV+MG GEP+ N DNV +L + G S R +T+ST G VP I R G I Sbjct: 158 RIVIMGSGEPMLNLDNVLAALDLMHHDKGQCISYRNMTISTCGIVPGIEEMTRQGRTIN- 216 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 LA+SLHA + LR+ L+PIN KYP +IDA Y + N R++ +EY++L GIND Sbjct: 217 -LAVSLHAATGALRDRLMPINGKYPFPEVIDAASRYEKM-NGRQVMYEYILLAGINDREE 274 Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 DA L + L G +NLIP NP P + + +D+ F + +K+ + +R G D Sbjct: 275 DARALAEALSGKECVVNLIPANPVPEKGFRRPEDRDVDRFFQYLKKRHINVTVRKEMGKD 334 Query: 358 ILAACGQLKS 367 I AACGQL++ Sbjct: 335 INAACGQLRA 344 >gi|167757025|ref|ZP_02429152.1| hypothetical protein CLORAM_02574 [Clostridium ramosum DSM 1402] gi|237735905|ref|ZP_04566386.1| ribosomal RNA large subunit methyltransferase N [Mollicutes bacterium D7] gi|167703200|gb|EDS17779.1| hypothetical protein CLORAM_02574 [Clostridium ramosum DSM 1402] gi|229381650|gb|EEO31741.1| ribosomal RNA large subunit methyltransferase N [Coprobacillus sp. D7] Length = 342 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 121/336 (36%), Positives = 194/336 (57%), Gaps = 24/336 (7%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q++ W+Y + R F MSD+S+++R+ L FS+ +I ++++S DGT K+L Sbjct: 24 FRAKQVFSWLYQKDARSFDDMSDLSKDLRNQLKVEFSLDVLKIKEKQVSRDGTIKYLFEL 83 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + G + IE+V + +LCV+SQ+GC++ C+FC +G + R+LT EI+ Q++ Sbjct: 84 ----LDGSL-IESVLMIHDYGKSLCVTSQIGCNMKCTFCASGLLRKQRDLTPGEIVAQII 138 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 V + +++S++V+MG GEP N+DNV + + I + GL+ Sbjct: 139 -----------------KVQQDIDQRVSHVVVMGTGEPFDNYDNVMEFVRIINHPHGLAI 181 Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 R IT+ST G + I R EE I LAISLHA ++++R+ L+PIN+ +P++ L +A Sbjct: 182 GARHITISTCGLIKGIKRYSEEGIQTNLAISLHAANDEIRDELMPINKVHPMDDLREAIS 241 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 Y +N RR+TFEY+MLKG+ND A L L+G+ A +NLIP+N Y SD+ Sbjct: 242 EYIDKTN-RRVTFEYIMLKGVNDDIVYARQLAHYLRGLNAYVNLIPYNSVDEHGYQPSDK 300 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 + + F + R + +R G DI ACGQL++ Sbjct: 301 ETVEIFKNELLRLHINVTLRKEHGRDIDGACGQLRA 336 >gi|326334975|ref|ZP_08201175.1| cfr family radical SAM enzyme [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692780|gb|EGD34719.1| cfr family radical SAM enzyme [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 354 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 133/369 (36%), Positives = 211/369 (57%), Gaps = 27/369 (7%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 +F+K + + +EEL+ L G R SQ+++W++ +G F M+++S+E Sbjct: 9 FHFMK--DIRALKKEELQAFFLAHG----EKAFRASQVYEWLWTKGAHSFDQMTNLSKET 62 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R LL +HF I + ++ + S DGT K +R + + +E+V IP +R T C+SS Sbjct: 63 RTLLGEHFVINHIKVDTMQRSEDGTIKNAVR-----LHDGLYVESVLIPTDTRITACISS 117 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGCSL C+FC T K +RNL+ +EI QVL I+ R + Sbjct: 118 QVGCSLNCTFCATARLKRMRNLSPDEIFDQVLT-------------IDQQSRLYYARPLR 164 Query: 181 NIVMMGMGEPLCNFDNVKKSLS-IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238 NIV MGMGEPL N+ NV K++ I S+ GL FS +RIT+STSG I ++ ++ + Sbjct: 165 NIVFMGMGEPLMNYPNVIKAIERITSEKEGLGFSPKRITVSTSGISKLIRKMADDRVKFK 224 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLH+ RN ++P +PL L +A +++ + +R IT+EYV+ KG+ND+ +D Sbjct: 225 LAVSLHSAIEQTRNCIMPWTVNFPLTELREALQYWYQHTKSR-ITYEYVVWKGVNDTLKD 283 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 L+ + P K+NLI +NP +L +D+K ++ + + ++ +G ++ IR RG DI Sbjct: 284 IEALVAFCRFAPCKVNLIEYNPIDDGAFLQADEKILLLYKKKLEEAGITTTIRYSRGKDI 343 Query: 359 LAACGQLKS 367 AACGQL + Sbjct: 344 DAACGQLAN 352 >gi|160945217|ref|ZP_02092443.1| hypothetical protein FAEPRAM212_02736 [Faecalibacterium prausnitzii M21/2] gi|158442948|gb|EDP19953.1| hypothetical protein FAEPRAM212_02736 [Faecalibacterium prausnitzii M21/2] gi|295105558|emb|CBL03102.1| 23S rRNA m(2)A-2503 methyltransferase [Faecalibacterium prausnitzii SL3/3] Length = 346 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 127/364 (34%), Positives = 199/364 (54%), Gaps = 30/364 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K + + EL + L +G P R QI+ W++ + + +F M+D + + L Sbjct: 3 QKRCISSLTLAELTDELKALGQPG----FRAKQIFHWVHQKLVTEFSAMTDQPKTLLAKL 58 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFP-ARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + F I P+I + + DGT K+LLR CI ETV + T+CVS+QVG Sbjct: 59 EETFYIAAPQIERRQEAKDGTVKYLLRMADGNCI------ETVVMRYHYGNTVCVSTQVG 112 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC + VRNL A EI ++ A+ +G +IS+IV Sbjct: 113 CRMGCRFCASTQAGRVRNLEAGEICSEIYTAQK-----------------DIGERISHIV 155 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEPL NFD V + L + G++ R I+LST G VP I ++ E+ + + L+IS Sbjct: 156 LMGIGEPLDNFDEVMRFLENITSPEGVNIGMRNISLSTCGLVPKIDQLAEKKLQLTLSIS 215 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N +R+ ++P+N YP+E LI R Y + RR++FEY M++G+NDS A L Sbjct: 216 LHAPTNQIRSSMMPVNDAYPVEQLIQTVRRYQE-TTGRRVSFEYSMVRGVNDSDVCAKQL 274 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +++G+ A +NLIP NP G Y +D ++ F + ++ G ++ +R G +I AAC Sbjct: 275 ADLIRGMGAHVNLIPINPVDGSPYSATDAANVRRFQQKLESLGVNATVRRRLGSEISAAC 334 Query: 363 GQLK 366 GQL+ Sbjct: 335 GQLR 338 >gi|293365659|ref|ZP_06612368.1| cfr family radical SAM enzyme [Streptococcus oralis ATCC 35037] gi|291316027|gb|EFE56471.1| cfr family radical SAM enzyme [Streptococcus oralis ATCC 35037] Length = 349 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 125/348 (35%), Positives = 202/348 (58%), Gaps = 26/348 (7%) Query: 26 IPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI--IYPEIVDEKISCD 83 + Q + R QIW+W+Y + ++ F+ M+++S+++ LN F + + IV E S D Sbjct: 6 LEQGEKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLKQRIVQE--SAD 63 Query: 84 GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLT 143 GT K+L P + IETV + + ++CV++QVGC++ C+FC +G K R+L Sbjct: 64 GTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCNIGCTFCASGLIKKQRDLN 118 Query: 144 AEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI 203 EI+ Q++L + D G ++ ++S+IV+MG+GEP N++NV + Sbjct: 119 NGEIVAQIMLVQKYF-DERGQDE-----------RVSHIVVMGIGEPFDNYNNVLNFVRT 166 Query: 204 ASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYP 262 +D G++ R IT+STSG I E + V LA+SLHA +N+LR+ ++ INR +P Sbjct: 167 INDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNELRSSIMKINRAFP 226 Query: 263 LEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNP 320 +E L A +Y +N RR+TFEY+ML +ND AL L ++LK I + +NLIP+NP Sbjct: 227 IEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALELAELLKNIKKLSYVNLIPYNP 285 Query: 321 WPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 +Y S ++ ++ F + +K+ G + +R G DI AACGQL+S Sbjct: 286 VSEHDQYSRSPKERVMAFYDTLKKKGVNCVVRQEHGTDIDAACGQLRS 333 >gi|229828531|ref|ZP_04454600.1| hypothetical protein GCWU000342_00595 [Shuttleworthia satelles DSM 14600] gi|229793125|gb|EEP29239.1| hypothetical protein GCWU000342_00595 [Shuttleworthia satelles DSM 14600] Length = 392 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 122/337 (36%), Positives = 189/337 (56%), Gaps = 25/337 (7%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKIS-CDGTRKWLL 90 + R Q+++WI+ R D+ MS++S+++R L + + + D +IS DGTRK+L Sbjct: 62 KFRARQLYEWIHRRQAADWDEMSNLSRDLRGRLMREADLTVLQEADCQISRLDGTRKYLF 121 Query: 91 RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150 + +E+V +P ++C+SSQVGC + C FC + +RNLT E+L Q Sbjct: 122 -----ALSDGNMVESVLMPYHHGNSVCISSQVGCRMGCRFCASTIDGWLRNLTPAEMLDQ 176 Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210 + + ++SN+V+MG GEPL NFDNV K + + SD GL Sbjct: 177 IY-----------------RIQRDSKERVSNLVLMGTGEPLDNFDNVVKLIGLVSDENGL 219 Query: 211 SFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 + S+R IT+ST G VP I + + + + LAISLHA S + R L+PI +Y L+ ++DA Sbjct: 220 NISQRNITVSTCGIVPRIRELADLNLSITLAISLHASSQETRRKLMPIAERYDLKEILDA 279 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 CR+Y + RR+TFEY ++ G+NDS DA L +L + +NLIP NP + S Sbjct: 280 CRYYFSRT-GRRLTFEYALVAGVNDSREDAARLAGLLGDLNCHVNLIPVNPIKERNFHQS 338 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 D++ ++ F +++ G + IR G DI ACGQL+ Sbjct: 339 DRRALLAFRTQLEKYGVNVTIRREMGRDIDGACGQLR 375 >gi|269123374|ref|YP_003305951.1| radical SAM enzyme, Cfr family [Streptobacillus moniliformis DSM 12112] gi|268314700|gb|ACZ01074.1| radical SAM enzyme, Cfr family [Streptobacillus moniliformis DSM 12112] Length = 353 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 128/361 (35%), Positives = 197/361 (54%), Gaps = 26/361 (7%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 ++ + +ELE+ L++G+ + Q+++W++ + + +F S+IS+E R LL + Sbjct: 5 DILDLSLDELEKMFLELGLK----KFNALQVYQWLHKKLVFNFDEFSNISKETRELLKEK 60 Query: 68 FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 F I + V + S D T K+L P + + IE+V + K+R ++CVSSQVGC L Sbjct: 61 FEIGTLKYVTHQTSKDKETVKFLFSLPGKKL-----IESVLLKYKNRYSICVSSQVGCPL 115 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG K +NL A EIL+Q ++ L + KISN+V MG Sbjct: 116 KCDFCATGMMKFEKNLKASEILMQFYYLQNYLKE--------------KNDKISNVVYMG 161 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLAISLHA 245 MGEP N+D V KS++I + G +FSKR T+STSG + I + V ++ V LAISLH+ Sbjct: 162 MGEPFLNYDAVNKSINILNSKEGQAFSKRNFTISTSGLINEIDKFVEDQKQVGLAISLHS 221 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V+ R+ L+PIN+ PL+ L ++ +Y RITFEY+++ N DA+ L+K Sbjct: 222 VNEKRRSELMPINKINPLDKLRESLLNYQN-KTKNRITFEYILIDDFNCEKEDAVALVKF 280 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 ++ +NLIP+N G Y + F + + +R +G DI AACGQL Sbjct: 281 MRSFNHLVNLIPYNKVAGKPYKTPSLQKQKEFYNHLLSHKINVTLRETKGEDIQAACGQL 340 Query: 366 K 366 K Sbjct: 341 K 341 >gi|194694544|gb|ACF81356.1| unknown [Zea mays] Length = 266 Score = 217 bits (552), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 112/257 (43%), Positives = 157/257 (61%), Gaps = 14/257 (5%) Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168 P + R T+CVSSQVGC++ C FC+TG L ++L+ EI+ Q + AR L D G Sbjct: 3 PVRGRTTICVSSQVGCAMNCQFCFTGRMGLRKHLSTAEIVEQAVFARRLFSDELG----- 57 Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228 I+N+V MGMGEP N DNV K+ +I D GL FS R++T+STSG VP + Sbjct: 58 ---------SINNVVFMGMGEPFHNIDNVIKASAIMVDEQGLHFSPRKVTVSTSGLVPQL 108 Query: 229 ARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVM 288 R +E LA+SL+A ++++RN ++PINRKY L +L+ R L + + FEYVM Sbjct: 109 KRFLQESNCSLAVSLNATTDEVRNWIMPINRKYNLNLLLGTLREELNLRQKQIVLFEYVM 168 Query: 289 LKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSS 348 L G+NDS DA LI++++GIP KINLI FNP G ++ + I+ F + + G + Sbjct: 169 LSGVNDSMDDAKRLIELVQGIPCKINLISFNPHGGSQFKPTPDDKIIEFRNVLIQGGLTV 228 Query: 349 PIRTPRGLDILAACGQL 365 +R RG D +AACGQL Sbjct: 229 FVRLSRGDDQMAACGQL 245 >gi|313113578|ref|ZP_07799166.1| radical SAM enzyme, Cfr family [Faecalibacterium cf. prausnitzii KLE1255] gi|310624093|gb|EFQ07460.1| radical SAM enzyme, Cfr family [Faecalibacterium cf. prausnitzii KLE1255] Length = 346 Score = 217 bits (552), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 125/353 (35%), Positives = 197/353 (55%), Gaps = 30/353 (8%) Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75 EL L +G P R QI+ W++ + + +F M+D + + L + F I P+I Sbjct: 14 ELTAELKAMGQPG----FRAKQIFHWVHQKLVTEFSAMTDQPKTLLAKLEESFYIAAPKI 69 Query: 76 VDEKISCDGTRKWLLRFP-ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134 + + DGT K+LLR CI ETV + T+CVS+QVGC + C FC + Sbjct: 70 ERRQEAKDGTVKYLLRMADGNCI------ETVVMRYHYGNTVCVSTQVGCRMGCRFCAST 123 Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194 VR+L A EI ++ A+ +G +IS+IV+MG+GEPL NF Sbjct: 124 QAGRVRDLEAGEICSEIYTAQK-----------------DIGERISHIVLMGIGEPLDNF 166 Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNI 253 D V K L + G++ R I+LST G VP I ++ E+ + + L++SLHA +N++R+ Sbjct: 167 DEVMKFLENITSPEGVNIGMRNISLSTCGLVPKIDQLAEKKLQLTLSVSLHAPNNEIRSG 226 Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313 ++P+N YP+E+L+ A R Y + RR++FEY M++G+NDS A L +++G+ A + Sbjct: 227 MMPVNDAYPVEVLMQAVRRYQD-TTGRRVSFEYSMVRGVNDSDACARQLANLIRGMGAHV 285 Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 NLIP NP G Y +D ++ F + ++ G ++ +R G +I AACGQL+ Sbjct: 286 NLIPINPVDGSPYSATDAANVHRFQQKLESLGVNATVRRRLGSEISAACGQLR 338 >gi|224538713|ref|ZP_03679252.1| hypothetical protein BACCELL_03607 [Bacteroides cellulosilyticus DSM 14838] gi|224519681|gb|EEF88786.1| hypothetical protein BACCELL_03607 [Bacteroides cellulosilyticus DSM 14838] Length = 346 Score = 217 bits (552), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 126/350 (36%), Positives = 186/350 (53%), Gaps = 29/350 (8%) Query: 18 EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD 77 +E + ++G+P QI W+Y + + M+++S + R LL + + V+ Sbjct: 15 QEVVKRLGMPG----FSAKQIASWLYDKKVNSIDDMTNLSLKHRDLLKDVYEVGAEAPVE 70 Query: 78 EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137 S DGT K+L R G +E VYIP++ R TLCVSSQVGC + C FC TG Q Sbjct: 71 AMRSTDGTVKYLYR-----AGDKNFVEAVYIPDEDRATLCVSSQVGCKMNCKFCMTGKQG 125 Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197 NLTA +I+ Q+ P + K++N+VMMGMGEPL N D V Sbjct: 126 FSANLTANQIINQI-------NSLPERD------------KLTNVVMMGMGEPLDNLDEV 166 Query: 198 KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPI 257 K+L I + S G +S +RITLST G R EE LA+SLH+ R L+P Sbjct: 167 LKALEIMTASYGYGWSPKRITLSTVGLRKGFQRFIEESECHLAVSLHSPVALQRRELMPA 226 Query: 258 NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIP 317 + + + ++D ++Y S RR++FEY++ KG+NDS A L+K+L+G+ +INLI Sbjct: 227 EKSFSITEMVDLLKNYD-FSKQRRLSFEYIVFKGVNDSLLYAKELLKLLRGLDCRINLIR 285 Query: 318 FNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 F+ PG + +D + + + + G + IR RG DI AACG L + Sbjct: 286 FHAIPGVDLEGADMETMTKLRDYLTSHGLFTTIRASRGEDIFAACGMLST 335 >gi|282890654|ref|ZP_06299177.1| hypothetical protein pah_c022o278 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499651|gb|EFB41947.1| hypothetical protein pah_c022o278 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 350 Score = 217 bits (552), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 135/362 (37%), Positives = 193/362 (53%), Gaps = 27/362 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 M EEL+ L + H + Q+ W+Y +GI D+ M++IS +++ LL Sbjct: 2 HQFFEMTEEELKTLLTSLDQKPFHAK----QLIDWVYGKGIIDWNEMTNISTDLKKLLQS 57 Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 S+ + ++V K S D T K+L R + +E+V I R T+CVSSQVGC Sbjct: 58 QISLSHLQLVHVKPSADLETYKFLWRLKDNKL-----VESVLICSGDRRTVCVSSQVGCP 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 C+FC +G Q RNL EI+ QV L L D ++S++V M Sbjct: 113 AKCAFCASGKQGFFRNLRPHEIVEQVFLINQWLKD--------------KNERVSHVVYM 158 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLH 244 GMGEPL N+D V KS+ + S+ L+ S+RRIT+ST G V I R+ EE+ V L +SLH Sbjct: 159 GMGEPLKNYDPVIKSIRLLSNPELLNLSQRRITVSTVGIVEGIKRLSREELKVSLVLSLH 218 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A + +R ++P RKYPL+ +++A Y L+ R ITFEY ++ GIND P A L Sbjct: 219 APNQHIRQKIIPYARKYPLDAIMEAMDEYAKLTK-RDITFEYTLIAGINDHPDHAFELTH 277 Query: 305 ILKGIPA-KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +L G +NLIP+NP PG ++K I F + + + R +G DI AACG Sbjct: 278 LLHGKSQFTVNLIPYNPVPGLRLKRPEKKAIKQFRAVLFGAKVVNTCRYTKGDDIAAACG 337 Query: 364 QL 365 QL Sbjct: 338 QL 339 >gi|111658342|ref|ZP_01409030.1| hypothetical protein SpneT_02000482 [Streptococcus pneumoniae TIGR4] Length = 349 Score = 217 bits (552), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 126/348 (36%), Positives = 202/348 (58%), Gaps = 26/348 (7%) Query: 26 IPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI--IYPEIVDEKISCD 83 + Q + R QIW+W+Y + ++ F+ M+++S+++ LN F + + IV E S D Sbjct: 6 LEQGEKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLKQRIVQE--SAD 63 Query: 84 GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLT 143 GT K+L P + IETV + + ++CV++QVGC++ C+FC +G K R+L Sbjct: 64 GTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCNIGCTFCASGLIKKQRDLN 118 Query: 144 AEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI 203 EI+ Q++L + D G ++ +IS+IV+MG+GEP N++NV Sbjct: 119 NGEIVAQIMLVQKYF-DERGQDE-----------RISHIVVMGIGEPFDNYNNVLNFFRT 166 Query: 204 ASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYP 262 +D G++ R IT+STSG I +E + V LA+SLHA +N+LR+ ++ INR +P Sbjct: 167 INDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVSLHAPNNELRSSIMKINRAFP 226 Query: 263 LEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNP 320 +E L A +Y +N RR+TFEY+ML +ND AL L ++LK I + +NLIP+NP Sbjct: 227 IEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALELTELLKNIKKLSYVNLIPYNP 285 Query: 321 WPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 +Y S ++ ++ F + +K+ G + +R G DI AACGQL+S Sbjct: 286 VSEHDQYSRSPKECVLAFYDTLKKKGVNCVVRQEHGTDIDAACGQLRS 333 >gi|312892339|ref|ZP_07751834.1| 23S rRNA m(2)A-2503 methyltransferase [Mucilaginibacter paludis DSM 18603] gi|311295123|gb|EFQ72297.1| 23S rRNA m(2)A-2503 methyltransferase [Mucilaginibacter paludis DSM 18603] Length = 350 Score = 217 bits (552), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 125/350 (35%), Positives = 194/350 (55%), Gaps = 24/350 (6%) Query: 19 EALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE 78 EAL K+ + R Q+++W++ + F MS++S+E+R L + F+I ++ Sbjct: 14 EALQKLFLELGEKSFRAKQVYEWLWKKSCFSFNEMSNLSKELRQKLEEQFTINNVKVNTS 73 Query: 79 KISCDGTRK--WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136 + S D T K ++L G + IE V IP R T CVSSQVGCSLTC FC TG Sbjct: 74 QFSADKTIKNSFILH------DGHL-IEGVLIPADDRMTACVSSQVGCSLTCKFCATGYM 126 Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196 + RNL +EI QV+L I+ + ++NIV MGMGEPL N+ N Sbjct: 127 ERKRNLNPDEIYDQVVL-------------IDQQARQNYDHHLTNIVYMGMGEPLLNYAN 173 Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILV 255 V KS+ + GL+ + +RIT+ST+G I ++G++ + LA+SLHA ++ RN ++ Sbjct: 174 VLKSIERITAEDGLNMAAKRITVSTAGIAKMIKKLGDDQVKFNLALSLHAANDAKRNEIM 233 Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINL 315 PIN + L+ L +A ++Y + +T+EY++ ND +DA+ L K IP K+N+ Sbjct: 234 PINEQNSLKALAEALKYYYAKT-KNPVTYEYIVFNDFNDEIQDAVELAAFCKHIPCKVNI 292 Query: 316 IPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I +NP Y +D I F++ +++ ++ +R RG DI AACGQL Sbjct: 293 IEYNPISFASYTNADVDKIEAFADYLRKQDINTNVRRSRGKDIDAACGQL 342 >gi|304382166|ref|ZP_07364677.1| cfr family radical SAM enzyme [Prevotella marshii DSM 16973] gi|304336764|gb|EFM02989.1| cfr family radical SAM enzyme [Prevotella marshii DSM 16973] Length = 346 Score = 217 bits (552), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 132/370 (35%), Positives = 198/370 (53%), Gaps = 35/370 (9%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K+ L+GM + L E + +G+P R Q+ KW+Y R + M+DIS+ R L Sbjct: 4 EKKPLLGMTQVALTETAVALGMPAFTGR----QMAKWLYSRHVSSIAEMTDISKAHRERL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFP---ARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 H+ I VD + S DGT K+L FP RCI ETVYIP+K R TLCVS Q Sbjct: 60 GMHYCIGNHAPVDCQRSVDGTVKYL--FPTLDGRCI------ETVYIPDKERATLCVSCQ 111 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC + C FC TG Q NLT +IL Q+ P E ++N Sbjct: 112 VGCKMNCLFCQTGKQGFEGNLTVCDILNQIY-------SLPERE------------TLTN 152 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 IV MG GEP+ N DNV ++ I + G ++S +RIT+S+ G + R +E +A+ Sbjct: 153 IVFMGQGEPMDNLDNVLQATEILTAPYGYAWSPKRITVSSVGVRGRLKRFLDESECHVAV 212 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 S+H+ + R L+P R + + D R Y S+ RR++FEY++ G+ND+P A Sbjct: 213 SMHSPFPEQRAQLMPAERSMSITEIADLLRQY-DFSHQRRLSFEYIVFGGLNDTPAHAKA 271 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +I++L+G+ ++NLI F+P P ++++ + F + + R G + IR RG DI AA Sbjct: 272 IIRLLQGLDCRVNLITFHPIPNISLHGANRETMERFRDELTRHGVFTTIRASRGQDIFAA 331 Query: 362 CGQLKSLSKR 371 CG L + ++ Sbjct: 332 CGLLSTAKQK 341 >gi|282879497|ref|ZP_06288231.1| radical SAM enzyme, Cfr family [Prevotella timonensis CRIS 5C-B1] gi|281306644|gb|EFA98670.1| radical SAM enzyme, Cfr family [Prevotella timonensis CRIS 5C-B1] Length = 350 Score = 217 bits (552), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 127/366 (34%), Positives = 199/366 (54%), Gaps = 29/366 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ L+GM EL+E + + +P QI KW+Y++ + M+++S+ R +L Sbjct: 10 KKKLMGMTLSELQEVVHHLNMPT----FTAGQIAKWLYLQQVTSIDEMTNLSKNNRQILQ 65 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + F I + +D + S DGT K+L FP G + +ETVYIP++ R TLCVSSQVGC Sbjct: 66 ESFEIGCMKPLDAQYSKDGTIKYL--FPT--ASGNL-VETVYIPDQDRATLCVSSQVGCK 120 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q NLT +IL Q+ P E K++NIV M Sbjct: 121 MNCLFCQTGKQGFEGNLTYTDILNQIY-------SLPERE------------KLTNIVFM 161 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 G GEP+ N DNV ++ I + G ++S +RIT+S+ G + R +E +AISLH+ Sbjct: 162 GQGEPMDNIDNVLRATQILTAPYGYAWSPKRITVSSVGVKGKLKRFLDESDCHVAISLHS 221 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + R L+P + P++ +++ R Y ++ RR++FEY++ G NDS R A ++++ Sbjct: 222 AIPEQRRELMPAEKAMPIQEIVELLREY-DFAHQRRLSFEYIVFDGENDSIRHAQKVVEL 280 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G+ ++NLI F+ P +D + F + + G + IR RG DI AACG L Sbjct: 281 LRGLDCRVNLIRFHQIPNVSLRGTDTATMERFRDYLTSHGIFTTIRASRGQDIFAACGLL 340 Query: 366 KSLSKR 371 + K+ Sbjct: 341 STAKKK 346 >gi|229916075|ref|YP_002884721.1| radical SAM enzyme, Cfr family [Exiguobacterium sp. AT1b] gi|229467504|gb|ACQ69276.1| radical SAM enzyme, Cfr family [Exiguobacterium sp. AT1b] Length = 353 Score = 217 bits (552), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 128/366 (34%), Positives = 211/366 (57%), Gaps = 27/366 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ G+ ++L + G H R Q+W +Y+ ++ ++ + EVR L Sbjct: 2 KSSIYGLTFDQLTNECTEAGYGAFHAR----QVWDSLYIDRVKSMDDLN-VRDEVRDYLT 56 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + I E+ ++ + DGT K+LL+ + IETV + K ++CV++QVGC+ Sbjct: 57 EKYVISTQELFVKQEAGDGTVKFLLK-----LHDGHYIETVLMRHKYGRSVCVTTQVGCN 111 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + CSFC +G K R+LTA E++ Q++ + L D EG G ++S+IV+M Sbjct: 112 IGCSFCASGLLKKTRDLTAGEVVEQIMTVQHFL-------DEEGE-----GDRVSHIVVM 159 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244 G+GEP NFDN+ L + D GL+ + R+I +STSG I + + ++ + LA+SLH Sbjct: 160 GIGEPFDNFDNLVDFLLVVKDERGLAIAPRKINVSTSGLADKIYKFADLDLRINLALSLH 219 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +++LR ++ INR +PL+ L+ + R+Y +N +RITFEY++L +ND P A L Sbjct: 220 APNDELRTRIMKINRAFPLDKLMPSIRYYVEKTN-KRITFEYILLSKVNDLPEHAEELAD 278 Query: 305 ILKGIPAK--INLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +++ I K +NLIP+NP +Y S +DI+ F + +K+ G ++ +R G DI AA Sbjct: 279 LIEDIKDKSYVNLIPYNPVNEHIQYERSTPEDIMAFYDILKKRGVNTGVRLEHGTDIDAA 338 Query: 362 CGQLKS 367 CGQL+S Sbjct: 339 CGQLRS 344 >gi|168484426|ref|ZP_02709378.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae CDC1873-00] gi|172042321|gb|EDT50367.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae CDC1873-00] gi|332077182|gb|EGI87644.1| radical SAM superfamily protein [Streptococcus pneumoniae GA17545] gi|332203922|gb|EGJ17989.1| radical SAM superfamily protein [Streptococcus pneumoniae GA47368] Length = 361 Score = 216 bits (551), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 127/368 (34%), Positives = 209/368 (56%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI+ Q++L + + E ++S+IV Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFAERGQDE------------RVSHIV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N++NV +D G++ R IT+STSG I +E + V LA+S Sbjct: 159 VMGIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ INR +P+E L A +Y +N R +TFEY+ML +ND AL L Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RGVTFEYIMLNEVNDGVEQALEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++LK I + +NLIP+NP +Y S ++ ++ F + +K+ G + +R G DI Sbjct: 278 TELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|229495911|ref|ZP_04389637.1| radical SAM enzyme, Cfr family [Porphyromonas endodontalis ATCC 35406] gi|229317224|gb|EEN83131.1| radical SAM enzyme, Cfr family [Porphyromonas endodontalis ATCC 35406] Length = 339 Score = 216 bits (551), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 134/361 (37%), Positives = 196/361 (54%), Gaps = 30/361 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L+GM+ EEL L IG+P+ R Q+ WIY + + F M++IS R LL + Sbjct: 3 TLLGMLPEELTGLALSIGMPKFAGR----QLADWIYNKRVTSFDEMTNISLRHRALLQEK 58 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIG-GPVEIETVYIPEKSRGTLCVSSQVGCSL 126 +I V S DGTRK+L +G G +E+V+IPE R TLCVSSQ+GC + Sbjct: 59 ATIGRKAPVARADSKDGTRKFLF-----AVGDGAQYVESVFIPEGDRATLCVSSQIGCKM 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG Q NLT+ EI+ Q+L IP K++NIV MG Sbjct: 114 DCLFCMTGKQGFKGNLTSAEIVNQIL------------------SIPD-SDKLTNIVYMG 154 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N + V KS++ + GL+ S +RITLS+ G P +++ E+ LAISLH Sbjct: 155 MGEPLDNVEAVLKSIACFTHPSGLAMSPKRITLSSIGLEPGLSKFLEQCSCHLAISLHNA 214 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 + R ++PI R P+E I+ + Y S RR+TFEY++ G+ND A L++++ Sbjct: 215 LPEERLSMMPIERAMPIEKTIETLKRY-NFSGQRRLTFEYIVFGGLNDDIAHAKALLRLI 273 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + + INLI ++ P S ++ + F++ + +G + IR RG DI AACG L Sbjct: 274 RPLECHINLIRYHRIPNVALPSSQEERMQRFADYLNGAGVPTTIRASRGEDIAAACGMLS 333 Query: 367 S 367 + Sbjct: 334 A 334 >gi|332521669|ref|ZP_08398122.1| radical SAM enzyme, Cfr family [Lacinutrix algicola 5H-3-7-4] gi|332042758|gb|EGI78958.1| radical SAM enzyme, Cfr family [Lacinutrix algicola 5H-3-7-4] Length = 346 Score = 216 bits (551), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 129/366 (35%), Positives = 204/366 (55%), Gaps = 24/366 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK+ + + +E+L E +K G R +Q+++W++ +G F+ M++IS+E R +L Sbjct: 4 KKKDIRALSKEQLREFFVKEG----DKAFRGNQVYEWLWGKGAHTFEDMTNISKETRQML 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +F I + + + S DGT K ++ I +E+V IP ++R T CVSSQVGC Sbjct: 60 QDNFVINHISVDTMQRSSDGTVKNAVKLHDGLI-----VESVLIPTETRTTACVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 SL C FC T K +RNL +EI QV+ D E + R +SNIV Sbjct: 115 SLDCKFCATSRLKRMRNLNPDEIYDQVVAI-----------DKESKLY--FNRPLSNIVF 161 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MGMGEPL N++NV K++ + GL S +RI +STSG I ++ ++ + LA+SL Sbjct: 162 MGMGEPLMNYNNVIKAIDKITSPEGLGMSPKRIVVSTSGVPKMIKKMADDAVKFNLAVSL 221 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ +++R ++P N+ +PL L +A ++ + R+IT+EYV+ GIND D L+ Sbjct: 222 HSAIDEVRTEIMPFNKTFPLNDLKEALEYWYEKTQ-RKITYEYVVWDGINDRREDINALV 280 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K K +P KIN+I +NP ++ + K I + + ++ + +R RG DI AACG Sbjct: 281 KFCKYVPCKINIIEYNPIDDGQFQQASSKAIDNYIQALESNNIVVNVRRSRGKDIDAACG 340 Query: 364 QLKSLS 369 QL + S Sbjct: 341 QLANKS 346 >gi|170288910|ref|YP_001739148.1| radical SAM protein [Thermotoga sp. RQ2] gi|205829920|sp|B1LAW7|RLMN_THESQ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|170176413|gb|ACB09465.1| radical SAM enzyme, Cfr family [Thermotoga sp. RQ2] Length = 343 Score = 216 bits (551), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 135/363 (37%), Positives = 206/363 (56%), Gaps = 32/363 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++L+ + EEL + +G+ R R QI W++ + + +F M+++S++ R LL + Sbjct: 2 KNLLDLSYEELVAEVTSLGLE----RYRADQILDWVFNKKVNNFDEMTNLSKQHRALLKE 57 Query: 67 HFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 HFSI + +++D+K+S DGT K+L G +E ++ P+ R T C+S+QVGC Sbjct: 58 HFSIPFLKLLDKKVSRIDGTTKFLWELED---GNTIESVMLFHPD--RITACISTQVGCP 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG VRNLT EI+ Q+L E E +KI N+V M Sbjct: 113 VKCIFCATGMSGFVRNLTTGEIVAQIL----------SMEREE-------KKKIGNVVYM 155 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 GMGEPL N++N KS+ I + + RRIT+ST G I ++ EE + V LA+SLH Sbjct: 156 GMGEPLLNYENTIKSIRILNHKKMGNIGIRRITISTVGIPDRIIQLAEEGLDVKLALSLH 215 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N R+ LVP+N+KY +E +++A + Y R+T EYV+++GIND DA L + Sbjct: 216 APTNFKRDQLVPLNKKYSIEEILNAVKIYQR-KTGNRVTIEYVLIRGINDEISDAKKLAE 274 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKD-IVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ILK + +NLIP N P E L ++ ++ F + +G + IR +G DI AACG Sbjct: 275 ILKNMKIFVNLIPVN--PTAEDLKKPSRERLLAFKRILLENGIEAEIRREKGSDIEAACG 332 Query: 364 QLK 366 QL+ Sbjct: 333 QLR 335 >gi|303239357|ref|ZP_07325885.1| radical SAM enzyme, Cfr family [Acetivibrio cellulolyticus CD2] gi|302593143|gb|EFL62863.1| radical SAM enzyme, Cfr family [Acetivibrio cellulolyticus CD2] Length = 347 Score = 216 bits (551), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 121/363 (33%), Positives = 208/363 (57%), Gaps = 30/363 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K L+ + EELE L++G + R Q+++W+ +G++D M+++S+++R L Sbjct: 4 KVDLLNLTIEELENFFLEMG----QQKFRAKQVFQWVN-KGVKDIDEMTNLSKDIRESLR 58 Query: 66 QHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I E+V++ +S DGT K+L + I G + +E+V + + ++C+SSQVGC Sbjct: 59 ASAYINKLEVVEKFVSKIDGTTKYLFKL----IDGNI-VESVLMKYEHGFSVCISSQVGC 113 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC + +RNLT+ E+L QVL ++ G ++ N+V+ Sbjct: 114 KMGCKFCASTGVGFLRNLTSAEMLDQVLTIQN-----------------DAGSRVGNVVV 156 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+DN+ K + + + G++ R I +ST G VP I ++ +E + + L+ISL Sbjct: 157 MGIGEPFDNYDNLVKFIRLINHKDGMNLGARHIAVSTCGLVPEILKLSKENLPITLSISL 216 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++ R ++P+N++Y ++ LI+AC+ Y + +RRITFEY ++ G+ND A L Sbjct: 217 HATNDEAREKIMPVNKRYSIDKLIEACKIYTE-TTSRRITFEYALIDGVNDLIEYAQQLS 275 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LKG+ +NLIP N + S ++ I F E +++ G + +R G DI AACG Sbjct: 276 NLLKGMLCHVNLIPVNSVTNTGFKKSSKERIYKFKEVLEKRGIETTVRRELGADIDAACG 335 Query: 364 QLK 366 QL+ Sbjct: 336 QLR 338 >gi|281426132|ref|ZP_06257045.1| radical SAM enzyme, Cfr family [Prevotella oris F0302] gi|281399708|gb|EFB30539.1| radical SAM enzyme, Cfr family [Prevotella oris F0302] Length = 348 Score = 216 bits (551), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 133/374 (35%), Positives = 205/374 (54%), Gaps = 30/374 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K++L+GM EL+EA ++G+P QI KW+Y ++ M++IS+ R L Sbjct: 5 KKALLGMTLNELKEACKQLGMPA----FTGGQIAKWLYTHHVKHIDEMTNISKTNRAKLE 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + ++I E ++ + S DGT K+L FP G +ETVYIPE R TLCVS QVGC Sbjct: 61 EAYTIGCAEALEAQHSKDGTIKYL--FPT--ASGKF-VETVYIPENDRATLCVSCQVGCK 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q +LT +IL Q+ +P V K++NIV M Sbjct: 116 MNCLFCQTGKQGFEGSLTTCDILNQIY------------------SLPEVD-KLTNIVFM 156 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 G GEP+ N DN+ ++ I + G ++S +RIT+S+ G + R EE +AISLH+ Sbjct: 157 GQGEPMDNLDNILRTTEILTADYGWAWSPKRITVSSVGVKNKLKRFIEESDCHVAISLHS 216 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + R L+P + + +++ R+Y S+ RR++FEY++ G+NDS A L+++ Sbjct: 217 PIAEQRAELMPAQKGMSIAEIVELLRNYD-FSHQRRLSFEYIVFGGVNDSMTHARELVRL 275 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG+ +INLI F+ P +D+K + + + G + IR RG DI AACG L Sbjct: 276 LKGLDCRINLIRFHQIPDVPLHGADEKRMEELRDYLTSHGIFTTIRASRGQDIFAACGLL 335 Query: 366 KSLSKRIPKVPRQE 379 S SK+I ++ ++ Sbjct: 336 -STSKKIGEIRHEQ 348 >gi|282876907|ref|ZP_06285759.1| radical SAM enzyme, Cfr family [Prevotella buccalis ATCC 35310] gi|281300950|gb|EFA93267.1| radical SAM enzyme, Cfr family [Prevotella buccalis ATCC 35310] Length = 343 Score = 216 bits (551), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 127/365 (34%), Positives = 192/365 (52%), Gaps = 29/365 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ L+GM EL+E +G+P Q+ KW+Y R + M+DIS+ R L Sbjct: 5 KKKLLGMTLSELKEVAQALGMPS----FAGGQMAKWLYQRQVTSIGEMTDISKSNRERLA 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + I +D + S DGT K+L FP +ETV+IP+ R TLCVS QVGC Sbjct: 61 EEYEIGCMAHIDAQYSKDGTIKYL--FPT---ASGKFVETVFIPDDDRATLCVSCQVGCK 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q NLT +IL QV +P R ++NIV M Sbjct: 116 MNCLFCQTGKQGFEGNLTYADILNQVY------------------SLPERDR-LTNIVFM 156 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 G GEP+ N DNV + + + G ++S +RIT+S+ G + R +E +AISLH+ Sbjct: 157 GQGEPMDNLDNVLRVTQVMTADYGYAWSPKRITVSSVGVKGKLKRFLDESDCHVAISLHS 216 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + R++L+P + P+E ++D R Y ++ RR++FEY++ G+ND+P A +I + Sbjct: 217 ALPEQRSMLMPAEKGMPIEQIVDLLRGYD-FAHQRRLSFEYIVFGGLNDTPMHARRIIDL 275 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L G+ ++NLI F+ P +D++ + F + G + IR RG DI AACG L Sbjct: 276 LHGLDCRVNLIRFHQIPNVPLKGADEQKMENFRNYLTSHGVFTTIRASRGQDIFAACGLL 335 Query: 366 KSLSK 370 + K Sbjct: 336 STAKK 340 >gi|291297322|ref|YP_003508720.1| radical SAM enzyme, Cfr family [Meiothermus ruber DSM 1279] gi|290472281|gb|ADD29700.1| radical SAM enzyme, Cfr family [Meiothermus ruber DSM 1279] Length = 342 Score = 216 bits (550), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 124/333 (37%), Positives = 182/333 (54%), Gaps = 21/333 (6%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93 R Q+ W+Y +G R + M+D+ + +R + + I V S DG+ K+L Sbjct: 24 RRGQLAAWLYAKGARQWDEMTDLPKALRAEWAEQYRISEFTEVAPFPSQDGSVKYLFTL- 82 Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153 + G + E VY+P +R T+C+SS VGC C+FC TG RNLTA E+L QVL Sbjct: 83 ---LDG-QKTEAVYMPYLNRKTICISSMVGCPAGCTFCATGRMGFGRNLTAAEMLDQVLF 138 Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213 A P R+I N+V+MGMGEPL N +NV K+L GL+ S Sbjct: 139 AAYHQQHAP--------------REIRNVVLMGMGEPLLNLENVFKALERMLHPEGLAMS 184 Query: 214 KRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 RRITLST G I ++ E + V LA+SLHA ++ R ++P +Y + +++A RH Sbjct: 185 PRRITLSTVGIPRGIYKMAEWGLEVRLALSLHAPDDETRQRIIPTAHRYSIAEIMEAVRH 244 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + RRIT EY +LKG+ND A L + +G+ +NLIP+NPW G + + + Sbjct: 245 YYAKTK-RRITLEYTLLKGVNDHDWQARALAQHFRGLSVHMNLIPWNPWEGAPHQGTPRA 303 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I+ F+ +++ G + +R RG D+ AACGQL Sbjct: 304 QILKFAAILEQQGIPTSVRWSRGRDVGAACGQL 336 >gi|327398526|ref|YP_004339395.1| Ribosomal RNA large subunit methyltransferase N [Hippea maritima DSM 10411] gi|327181155|gb|AEA33336.1| Ribosomal RNA large subunit methyltransferase N [Hippea maritima DSM 10411] Length = 342 Score = 216 bits (550), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 124/364 (34%), Positives = 205/364 (56%), Gaps = 31/364 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 ++ + +EL+ L+ +G + + R QI+ ++Y + I F ++ + +EVR L + Sbjct: 3 DIMSLEYDELKSILIGLG----YEKYRAEQIFSFLYKQRIEGFDDITVLKKEVRRQLKEQ 58 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSL 126 F I E + DGT+K+L + + + IE+V IP E +R T+CVS+Q GC + Sbjct: 59 FFIYKIEEKTSYAADDGTKKYLFK-----LNDGMLIESVLIPMEANRFTICVSTQAGCRM 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG RNL+ EI+ QV+ ++ K +N+V MG Sbjct: 114 GCKFCATGRMGFKRNLSTSEIVSQVVY-----------------ILKVNNLKTANVVYMG 156 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245 MGEPL N++N KS+ I SD GLS SKRRITLST+G P + ++ +++ + +A+SLH+ Sbjct: 157 MGEPLDNYENTVKSIKILSDDRGLSISKRRITLSTAGITPGVNKLKKDLPNINMALSLHS 216 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + + R++++PIN YP++ +++ + +P + +RITFEYVM+KGIND+ D L+K+ Sbjct: 217 IISKKRSMIMPINDTYPIDEVLNELKDFP-MPRRKRITFEYVMIKGINDTKDDLKALLKV 275 Query: 306 LKGIPAKINLIPFNPWP--GCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 + K+N+IP N G ++ + I F++ ++ G IR +G I AACG Sbjct: 276 MSNFKCKLNIIPLNKHDLLGTKFEPTPMDRIEEFADYLRNKGMFVTIRKSKGSSINAACG 335 Query: 364 QLKS 367 L + Sbjct: 336 MLAT 339 >gi|189467727|ref|ZP_03016512.1| hypothetical protein BACINT_04119 [Bacteroides intestinalis DSM 17393] gi|189435991|gb|EDV04976.1| hypothetical protein BACINT_04119 [Bacteroides intestinalis DSM 17393] Length = 346 Score = 216 bits (550), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 126/350 (36%), Positives = 186/350 (53%), Gaps = 29/350 (8%) Query: 18 EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD 77 +EA+ ++G+P QI W+Y + + M+++S + R LL + + V+ Sbjct: 15 QEAVKRLGMPG----FAAKQIASWLYDKKVNSIDDMTNLSLKHRDLLKDVYEVGADAPVE 70 Query: 78 EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137 S DGT K+L R G +E VYIP++ R TLCVSSQVGC + C FC TG Q Sbjct: 71 AMRSVDGTVKYLYR-----AGDKHFVEAVYIPDEDRATLCVSSQVGCKMNCKFCMTGKQG 125 Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197 NLTA +I+ Q+ P + K++N+VMMGMGEPL N D V Sbjct: 126 FTANLTANQIINQI-------NSLPERD------------KLTNVVMMGMGEPLDNLDEV 166 Query: 198 KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPI 257 K+L I + S G +S +RITLST G R E LA+SLH+ R L+P Sbjct: 167 LKALEIMTASYGYGWSPKRITLSTVGLRKGFQRFIEGSECHLAVSLHSPVALQRRELMPA 226 Query: 258 NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIP 317 + + + ++D ++Y S RR++FEY++ KG+NDS A L+K+L+G+ +INLI Sbjct: 227 EKAFSITEMVDLLKNYD-FSKQRRLSFEYIVFKGVNDSLLYAKELLKLLRGLDCRINLIR 285 Query: 318 FNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 F+ PG + +D + + + + G + IR RG DI AACG L + Sbjct: 286 FHAIPGVDLEGADMETMTKLRDYLTSHGLFTTIRASRGEDIFAACGMLST 335 >gi|149021632|ref|ZP_01835663.1| hypothetical protein CGSSp23BS72_07840 [Streptococcus pneumoniae SP23-BS72] gi|147930093|gb|EDK81079.1| hypothetical protein CGSSp23BS72_07840 [Streptococcus pneumoniae SP23-BS72] Length = 361 Score = 216 bits (550), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 126/367 (34%), Positives = 212/367 (57%), Gaps = 30/367 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMCQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI+ Q++L + D G ++ ++++IV Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVNHIV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N++NV +D G++ R IT+STSG I +E + + LA+S Sbjct: 159 VMGIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQINLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA++N+LR+ ++ INR +P+E L A +Y +N RR+TFEY+ML +ND AL L Sbjct: 219 LHALNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++LK I + +NLIP+NP +Y S ++ ++ F + +K+ G + +R G DI Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGGNCVVRQEHGTDID 337 Query: 360 AACGQLK 366 AACGQL+ Sbjct: 338 AACGQLR 344 >gi|220928956|ref|YP_002505865.1| ribosomal RNA large subunit methyltransferase N [Clostridium cellulolyticum H10] gi|254807165|sp|B8I259|RLMN_CLOCE RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|219999284|gb|ACL75885.1| radical SAM enzyme, Cfr family [Clostridium cellulolyticum H10] Length = 349 Score = 216 bits (550), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 139/361 (38%), Positives = 199/361 (55%), Gaps = 30/361 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L+ M EELE+ L ++G + R QI+KWI GIR F M++IS+++R L + Sbjct: 3 NLMNMTLEELEQMLSEMG----QQKFRAKQIFKWIN-SGIRSFSDMTNISKQLRDELEKV 57 Query: 68 FSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I +IVD + D T K+L I IE+V + K T C+SSQ GC + Sbjct: 58 SKISRLKIVDRLQSKIDSTVKYLFELEDGNI-----IESVLMEYKHGFTACISSQAGCRM 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC + RNLT E+L QV+ + ED G +I +IV+MG Sbjct: 113 GCKFCASTGAGFSRNLTPGEMLDQVMTMQ---------ED--------SGNRIGHIVLMG 155 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 +GEPL N++NV K L I + GL R I+LST G VP I ++ +E I + L++SLH+ Sbjct: 156 IGEPLDNYENVIKFLKIVNHPDGLMIGMRNISLSTCGVVPRILQLAKENIPITLSVSLHS 215 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +D R+ ++P+N+ Y ++ LI AC+ Y +S RRITFEY M+ G NDS +DA L + Sbjct: 216 ARDDKRSAMMPVNKTYCIDKLISACKIYT-VSTKRRITFEYAMILGENDSEQDARELAGL 274 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG+ +NLIP N G Y S + I F ++ G + +R G DI AACGQL Sbjct: 275 LKGMLCHVNLIPVNTVTGNGYKKSSRIHIDKFKNILESKGIETTVRRELGSDINAACGQL 334 Query: 366 K 366 + Sbjct: 335 R 335 >gi|170077338|ref|YP_001733976.1| radical SAM protein [Synechococcus sp. PCC 7002] gi|205829912|sp|B1XQH8|RLMN_SYNP2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|169885007|gb|ACA98720.1| radical SAM enzyme, Cfr family [Synechococcus sp. PCC 7002] Length = 346 Score = 216 bits (550), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 127/369 (34%), Positives = 202/369 (54%), Gaps = 31/369 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + ++ L+G EL + + G P R Q++ W+Y +GI D ++ + R Sbjct: 1 MPQDVLLGKSLPELTDWIETTGQPA----YRGKQLYNWLYQKGIHDLSEITVFPKAWREQ 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + + + +I ++ + DGTRK+LL+ I IETV IP + R T+CVSSQVG Sbjct: 57 MGT-YPVGRSQIHHQRTAPDGTRKYLLQLHDGLI-----IETVGIPTEKRLTVCVSSQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C FC TG R+L A EI+ QVL ++ DF +++S++V Sbjct: 111 CAMACDFCATGKSGFTRHLQAHEIIDQVLTVQT---DFQ--------------QRVSHVV 153 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 MGMGEPL N + V KS+ + +G+ +R +T+ST G I + ++ + + LA+S Sbjct: 154 FMGMGEPLANLEQVLKSIQSLNQDIGIG--QRSLTVSTVGVPDQIRALAQQNLQITLAVS 211 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA + LR ++P YP+E L+D CR Y ++ RR++FEY++L G+ND P A L Sbjct: 212 LHAPNQALRESIIPTAVHYPIEALLDECREYVAITR-RRLSFEYILLAGVNDLPDHAAEL 270 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K LKG + +NLIP+NP + +K I F + ++ + +R +GL+ AAC Sbjct: 271 AKKLKGFQSHVNLIPYNPITEVPFQRPGKKRINVFKQILQDHKIAVSVRYSKGLEADAAC 330 Query: 363 GQLKSLSKR 371 GQL+S +R Sbjct: 331 GQLRSNLRR 339 >gi|331004330|ref|ZP_08327805.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae oral taxon 107 str. F0167] gi|330411396|gb|EGG90811.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae oral taxon 107 str. F0167] Length = 346 Score = 216 bits (550), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 125/356 (35%), Positives = 203/356 (57%), Gaps = 33/356 (9%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII--- 71 EEL+ + ++G R Q+++W++ I F S++S+ R L + S+ Sbjct: 10 EELKTFVKELG----EAEFRAKQLFEWLHKSLIDSFDECSNLSKAFREKLKEVASLTGME 65 Query: 72 YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131 E+ + KI D T+K+L I IE+V + + ++C+SSQVGC + C FC Sbjct: 66 AIEVFESKI--DDTKKYLFALEDGNI-----IESVRMKYEHGNSVCISSQVGCRMGCKFC 118 Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191 + LVRNL+ E+L QV + LLG+ ++SNIV+MG GEP+ Sbjct: 119 ASTLDGLVRNLSVSEMLDQVYKIQKLLGE-----------------RVSNIVVMGSGEPM 161 Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDL 250 N+DN+ K + I S MGL+ S+R IT+ST G VP I + +E + + LA+SLHA ++++ Sbjct: 162 DNYDNIVKFVKIISSDMGLNISQRNITVSTCGIVPKIRELADEGLSITLALSLHAPNDEI 221 Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310 R ++P+ KY L+ +I AC +Y RR+++EY ++ GIND+ ++A+NL+K++ G Sbjct: 222 RKTIMPVANKYALKDVISACDYYFK-KTGRRVSYEYSLVAGINDNIKEAMNLVKLVNGRN 280 Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 INLIP NP ++ SD+ I F + +++ G ++ +R G DI ACGQL+ Sbjct: 281 IHINLIPVNPIKERDFKQSDKLKIKEFKDFLEKKGVNATVRREMGRDIDGACGQLR 336 >gi|149007648|ref|ZP_01831265.1| hypothetical protein CGSSp18BS74_04131 [Streptococcus pneumoniae SP18-BS74] gi|147760803|gb|EDK67774.1| hypothetical protein CGSSp18BS74_04131 [Streptococcus pneumoniae SP18-BS74] Length = 361 Score = 216 bits (550), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 127/368 (34%), Positives = 209/368 (56%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DQFVVNPLKQGIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI+ Q++L + + E ++S+IV Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFAERGQDE------------RVSHIV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N++NV +D G++ R IT+STSG I +E + V LA+S Sbjct: 159 VMGIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ INR +P+E L A +Y +N R +TFEY+ML +ND AL L Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RGVTFEYIMLNEVNDGVEQALEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++LK I + +NLIP+NP +Y S ++ ++ F + +K+ G + +R G DI Sbjct: 278 TELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|166032715|ref|ZP_02235544.1| hypothetical protein DORFOR_02430 [Dorea formicigenerans ATCC 27755] gi|166027072|gb|EDR45829.1| hypothetical protein DORFOR_02430 [Dorea formicigenerans ATCC 27755] Length = 356 Score = 216 bits (549), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 127/365 (34%), Positives = 196/365 (53%), Gaps = 29/365 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K+ ++ +EL++ + IG R QI+ W++ + +F M+++S+ +R Sbjct: 1 MEKKDIVSYNYDELQDEIKSIG----EKPFRAKQIYAWLHEKLAEEFDEMTNLSKALREK 56 Query: 64 LNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L+Q + I ++V +IS D T K+L IE+V + ++C+SSQV Sbjct: 57 LDQAYEIRKVKVVAHQISKVDPTEKFLFELE-----DGNRIESVLMKYNYGNSVCISSQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC + L RNLT E+L Q+ + + G+ ++SN+ Sbjct: 112 GCRMGCRFCASTLDGLERNLTTSEMLRQIYQIQKMTGE-----------------RVSNV 154 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAI 241 V+MG GEPL N+DN K + + SD GL+ S+R IT ST G VPNI R+ GE + + LA+ Sbjct: 155 VVMGTGEPLDNYDNFVKFIHMLSDEHGLNISQRSITASTCGIVPNIHRLAGEGLQITLAL 214 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH S + R L+PI KY L +++AC Y + RR+TFEY ++ +ND P D Sbjct: 215 SLHGSSQEKRKKLMPIANKYELSEVLEACDDYYKQT-GRRVTFEYSLVADVNDGPDDVKE 273 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ILK +NLIP NP + D K + F ++++G + IR RG DI A Sbjct: 274 LTGILKHRNCHLNLIPVNPIKERNFKKPDSKKAMEFQNKLEKNGINVTIRRERGSDIDGA 333 Query: 362 CGQLK 366 CGQL+ Sbjct: 334 CGQLR 338 >gi|157692255|ref|YP_001486717.1| Fe-S-cluster redox protein [Bacillus pumilus SAFR-032] gi|205829664|sp|A8FD40|RLMN_BACP2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|157681013|gb|ABV62157.1| possible Fe-S-cluster redox protein [Bacillus pumilus SAFR-032] Length = 360 Score = 216 bits (549), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 119/340 (35%), Positives = 192/340 (56%), Gaps = 21/340 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R +QI++W+Y + + F MS++S+E+R L F+I + V ++ S DGT K+L Sbjct: 37 FRAAQIFEWLYEKRVTSFDAMSNLSKELREKLKAQFAITTLKTVIKQTSQDGTIKFLFE- 95 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + IETV + + ++CV++QVGC + C+FC + L RNL A EI+ QVL Sbjct: 96 ----LHDGYTIETVLMRHEYGNSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVAQVL 151 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 + L + ++S++V+MG+GEP NF+ + L I + GL+ Sbjct: 152 KVQQALDE--------------TDERVSSVVIMGIGEPFDNFEEMLAFLKIINHDNGLNI 197 Query: 213 SKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 R IT+STSG +P I + E++ + A+SLHA + ++R+ L+PIN+ Y L L++A Sbjct: 198 GARHITVSTSGIIPKIYQFADEQMQINFAVSLHAPNTEIRSRLMPINKAYKLPKLMEAIE 257 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 +Y RR++FEY + G+ND A L +LKGI +NLIP N P +Y+ + + Sbjct: 258 YYIQ-KTGRRVSFEYGLFGGVNDQVHHAEELADLLKGIKCHVNLIPVNYVPERDYVRTPR 316 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 + I F + +K G + IR +G DI AACGQL++ ++ Sbjct: 317 EQIFLFEKTLKERGVNVTIRREQGHDIDAACGQLRAKERQ 356 >gi|218261353|ref|ZP_03476207.1| hypothetical protein PRABACTJOHN_01873 [Parabacteroides johnsonii DSM 18315] gi|218224074|gb|EEC96724.1| hypothetical protein PRABACTJOHN_01873 [Parabacteroides johnsonii DSM 18315] Length = 343 Score = 216 bits (549), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 132/368 (35%), Positives = 193/368 (52%), Gaps = 31/368 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K L+GM EEL+ + G+P + QI W+Y + + M++I+ R LL Sbjct: 3 EKRRLLGMTLEELKGVASEAGLPGYAAK----QIADWLYKKKVTSIAAMTNIAAAKRTLL 58 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVE-IETVYIPEKSRGTLCVSSQVG 123 + F + D S DGT K+L +PA GP +E+VYIP + R TLCVSSQVG Sbjct: 59 EESFEVGAVPPSDLMKSVDGTIKYL--YPA----GPGNFVESVYIPTEDRATLCVSSQVG 112 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG Q +NL+A EIL Q+ P E++ +NIV Sbjct: 113 CKMNCLFCMTGKQGFTKNLSANEILNQI-------QSLPETEEL------------TNIV 153 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MGMGEPL N D + K L I + G ++S +RIT+ST G + R EE LA+SL Sbjct: 154 FMGMGEPLDNVDELFKVLEILTAPYGYAWSPKRITVSTIGVAKGLKRFLEESECHLAVSL 213 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ R L+P+ + +P +I+ + Y ++ RRI+FEY++ K +ND + A L+ Sbjct: 214 HSPYPGERLSLMPVEKAFPARDIIETIKQY-DFTHQRRISFEYIVFKNLNDDLQHAKALV 272 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +L +P ++NLI F+ P SD + F + + +G IR RG DI AACG Sbjct: 273 CLLDKVPCRVNLIRFHAIPNVSLESSDLARMEAFRDTLNAAGIVCTIRASRGEDIFAACG 332 Query: 364 QLKSLSKR 371 L + K+ Sbjct: 333 MLSTAKKQ 340 >gi|327313758|ref|YP_004329195.1| 23S rRNA m2A2503 methyltransferase [Prevotella denticola F0289] gi|326945675|gb|AEA21560.1| 23S rRNA m2A2503 methyltransferase [Prevotella denticola F0289] Length = 357 Score = 216 bits (549), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 131/366 (35%), Positives = 196/366 (53%), Gaps = 29/366 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ L+GM EL+E +G+P Q+ KW+Y + ++ M++IS+ R L Sbjct: 9 KKYLLGMTLGELKEVAKSLGMPA----FTGGQMAKWLYTQQVKSIDEMTNISKANREKLA 64 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++I E D + S DGT K+L FP G +ETVYIPE R TLCVSSQVGC Sbjct: 65 AAYAIGCKEPTDVQYSKDGTVKYL--FPTDS--GKF-VETVYIPEDGRATLCVSSQVGCK 119 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q +L+A +IL QV +P K++NIV M Sbjct: 120 MNCLFCQTGKQGFEGSLSATDILNQVY------------------SLPERD-KLTNIVFM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 G GEP+ N DNV + I + G +S +RIT+S+ G + R EE +AIS+H+ Sbjct: 161 GQGEPMDNLDNVLRVTEILTAGFGYGWSPKRITVSSVGIKGKLKRFLEESDCHVAISMHS 220 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ R+ L+P R +E ++D +Y S+ RR++FEY++ K +NDS A ++++ Sbjct: 221 PLHEQRSELMPAERGMSIESIVDLLGNYD-FSHQRRLSFEYIVFKDVNDSEAHAKAIVRL 279 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG+ +INLI F+P P D + + F + + G + IR RG DI AACG L Sbjct: 280 LKGLDCRINLIRFHPIPNTPLQGVDDRKMEEFRNYLTQHGVFTTIRASRGQDIFAACGLL 339 Query: 366 KSLSKR 371 + ++ Sbjct: 340 STAKEK 345 >gi|119488056|ref|ZP_01621500.1| hypothetical protein L8106_11682 [Lyngbya sp. PCC 8106] gi|119455345|gb|EAW36484.1| hypothetical protein L8106_11682 [Lyngbya sp. PCC 8106] Length = 348 Score = 216 bits (549), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 135/361 (37%), Positives = 193/361 (53%), Gaps = 33/361 (9%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+G+ EEL + + G P R Q+++WIY +G + ++ ++ R + +F Sbjct: 11 LLGLSLEELTNWVQEQGQPA----YRGKQLYQWIYQKGSKSLSEITVFPKQWRETV-ANF 65 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 SI I ++ D T K+LL+ I IETV IP + R T+CVSSQVGC + C Sbjct: 66 SIGRSTIHYRSVAPDQTVKYLLKLADNNI-----IETVGIPTEKRLTVCVSSQVGCPMAC 120 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG VRNL EI+ QVL + DF GR++S+IV MGMG Sbjct: 121 DFCATGKGGFVRNLETHEIIDQVLTVQE---DF--------------GRRVSHIVFMGMG 163 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAISLHAV 246 EPL N NV ++ + +G+ +R IT+ST G +P R G ++ V LA+SLHA Sbjct: 164 EPLLNTKNVVAAIKSLNQDVGIG--QRMITVSTVG-IPQQIRDFAGYQLQVTLAVSLHAS 220 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 + LR L+P YPLE LI CR Y + RR++FEY++L ND P A+ L L Sbjct: 221 NQKLREKLIPSADHYPLEKLIADCREYVN-TTGRRVSFEYILLANFNDKPEHAIELATHL 279 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +G + +NLIP+NP +Y I TF + +K + +R RGL+ AACGQL+ Sbjct: 280 RGFQSHVNLIPYNPISEVDYQRPTSPQINTFMKALKERHIAVSVRYSRGLEADAACGQLR 339 Query: 367 S 367 + Sbjct: 340 A 340 >gi|255656559|ref|ZP_05401968.1| radical SAM protein [Clostridium difficile QCD-23m63] gi|296449989|ref|ZP_06891753.1| cfr family radical SAM enzyme [Clostridium difficile NAP08] gi|296878370|ref|ZP_06902378.1| cfr family radical SAM enzyme [Clostridium difficile NAP07] gi|296261259|gb|EFH08090.1| cfr family radical SAM enzyme [Clostridium difficile NAP08] gi|296430668|gb|EFH16507.1| cfr family radical SAM enzyme [Clostridium difficile NAP07] Length = 343 Score = 216 bits (549), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 126/338 (37%), Positives = 197/338 (58%), Gaps = 30/338 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI---VDEKISCDGTRKWL 89 R SQI+ WIY +G + F+ M++I + +R+ L + I + +I ++ K+ D T+K+L Sbjct: 28 FRGSQIFSWIY-KGAKTFEDMNNIPKSLRNKLEEISCIGHIDIELKLESKV--DNTKKYL 84 Query: 90 LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149 I IETV + SR T+CVS+QVGC + C+FC + L+RNL EIL Sbjct: 85 FLLDDGNI-----IETVMMDYDSRVTVCVSNQVGCRMGCNFCASTMDGLIRNLEPWEILD 139 Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209 QV+ + G+++SN+V+MG GEPL NF+N K+ L I ++ G Sbjct: 140 QVI-----------------KIQEDTGKRVSNLVLMGSGEPLDNFENTKQFLKIINEKNG 182 Query: 210 LSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 L+ R ITLST G VP + + + EI + LA+SLH+ ++ R ++P+ Y ++ ++D Sbjct: 183 LNIGYRHITLSTCGIVPKMYELADLEIAINLALSLHSPYDEERRKIMPVANAYSIKEILD 242 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 ACR+Y +N RR+TFEY ++KG+NDS ++A L K+LKG+ +NLIP N EY Sbjct: 243 ACRYYIKKTN-RRVTFEYSLIKGVNDSEKEAKALAKLLKGMLCHVNLIPINKVEEREYEK 301 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 D+ I F + ++++ + +R G DI ACGQL+ Sbjct: 302 PDKAFIYKFRDSLEKNNIPATVRMSMGSDISGACGQLR 339 >gi|225858576|ref|YP_002740086.1| ribosomal RNA large subunit methyltransferase N [Streptococcus pneumoniae 70585] gi|254807216|sp|C1C6B0|RLMN_STRP7 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|225721405|gb|ACO17259.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae 70585] Length = 361 Score = 216 bits (549), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 128/368 (34%), Positives = 211/368 (57%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMCQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI+ Q++L + D G ++ ++S+IV Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N++NV +D G++ R IT+STSG I +E + V LA+S Sbjct: 159 VMGIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ INR +P+E L A +Y +N R +TFEY+ML +ND AL L Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RGVTFEYIMLNEVNDGVEQALEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++LK I + +NLIP+NP +Y S ++ ++ F + +K+ G + +R G DI Sbjct: 278 TELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|256420250|ref|YP_003120903.1| radical SAM enzyme, Cfr family [Chitinophaga pinensis DSM 2588] gi|256035158|gb|ACU58702.1| radical SAM enzyme, Cfr family [Chitinophaga pinensis DSM 2588] Length = 347 Score = 216 bits (549), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 123/337 (36%), Positives = 194/337 (57%), Gaps = 25/337 (7%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE--KISCDGTRKWLL 90 R Q+++W++++ F M++IS+++R L +HF++ P I + + S DGT K Sbjct: 28 FRAKQVYEWLWLKHATSFDAMTNISKDLRSKLEEHFTL--PAITTDTTQHSDDGTIKSRF 85 Query: 91 RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150 R + +E V IP +R T CVSSQVGCSL+C FC TG RNL +EI + Sbjct: 86 RLHDGHM-----VEGVLIPTDTRQTACVSSQVGCSLSCKFCATGYMDRKRNLDFDEIYDE 140 Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210 V L + + + G+K+SNIV MGMGEPL N+ NV +S+ + GL Sbjct: 141 VAL-------------LNQQAMEAYGKKLSNIVYMGMGEPLLNYKNVLQSIERITSPDGL 187 Query: 211 SFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 S RRIT+ST+G I ++G++ + LA+SLHA +++ R+ ++PIN L++LI+A Sbjct: 188 GMSPRRITVSTAGVAKMIRQLGDDKVKFNLALSLHAANDEKRSQIMPINDTNNLKVLIEA 247 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEYLC 328 ++ +I+FEY++ K NDS +DA LI+I + +PA +N+I +NP ++ Sbjct: 248 LNYFYK-ETQNQISFEYILFKDFNDSFKDAEELIRIYRQVPADLVNIIEYNPISNARFMK 306 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 D+ F E + ++ ++ +R RG DI AACGQL Sbjct: 307 PDEDVAEAFMEYLSKNRVNARLRRSRGKDIDAACGQL 343 >gi|295091952|emb|CBK78059.1| 23S rRNA m(2)A-2503 methyltransferase [Clostridium cf. saccharolyticum K10] Length = 376 Score = 216 bits (549), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 127/355 (35%), Positives = 200/355 (56%), Gaps = 33/355 (9%) Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH--FSIIYP 73 ELE L ++G R Q+++W++V+ F M+++S+ +R L + ++ + P Sbjct: 42 ELEAYLKEMGEKP----FRAKQLYQWMHVKLAASFDEMTNLSKGLRETLGRQCFYASLTP 97 Query: 74 EIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132 VD +IS DGTRK+L G V IE+V + K ++C+SSQVGC + C FC Sbjct: 98 --VDVRISAVDGTRKYLFELS----DGNV-IESVLMRYKHGNSVCISSQVGCRMGCRFCA 150 Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192 + L RNL E+L Q+ + G ++SN+V+MG GEP+ Sbjct: 151 STLDGLERNLKPSEMLEQIY-----------------RIQRDTGERVSNVVVMGSGEPMD 193 Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLR 251 N+DN+ + + + +D GL+ S+R +T+ST G VP I + EE + V LA+SLHA ++++R Sbjct: 194 NYDNLIRFIHLLTDENGLNISQRNVTVSTCGIVPRIRQFAEEGLQVTLALSLHAPNDEVR 253 Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311 L+P+ + Y L ++DAC HY RR+TFEY ++KG+ND+ +A L +++K Sbjct: 254 KTLMPVAKSYALRDVLDAC-HYYFEKTGRRLTFEYSLVKGVNDNLEEARALAELIKDQHG 312 Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +NLIP NP +Y SD+K I F ++R G + +R G DI ACGQL+ Sbjct: 313 HVNLIPVNPIKERDYKQSDRKAIEDFKNYLERRGINVTVRREMGRDIDGACGQLR 367 >gi|169831742|ref|YP_001717724.1| radical SAM protein [Candidatus Desulforudis audaxviator MP104C] gi|205829744|sp|B1I501|RLMN_DESAP RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|169638586|gb|ACA60092.1| radical SAM enzyme, Cfr family [Candidatus Desulforudis audaxviator MP104C] Length = 318 Score = 216 bits (549), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 124/329 (37%), Positives = 179/329 (54%), Gaps = 25/329 (7%) Query: 40 KWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIG 98 +W++ +G M+++ R L + E++D ++S G T K+LL + Sbjct: 3 EWVFKQGALSLAEMTNLPAGFRKRLAGEAVVGRLEVLDSRVSAAGDTVKYLL-----GLD 57 Query: 99 GPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLL 158 +ETV + T+CVSSQVGC + C FC + +RNL + E+ QVL R Sbjct: 58 DGHAVETVLMRHDYGRTVCVSSQVGCRMACRFCASALGGWIRNLRSGELYEQVLAVRR-- 115 Query: 159 GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRIT 218 + G ++++V+MGMGEPL N++N K ++ + GL S+RRIT Sbjct: 116 ---------------ASGEPVTHVVLMGMGEPLDNYENTLKFVANVTAPYGLRLSQRRIT 160 Query: 219 LSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277 LST G VP I ++ E + + LAISLHA +N LR+ LVP+NRKYPLE LI AC Y Sbjct: 161 LSTCGLVPEIQKLARERLALTLAISLHAPNNALRDTLVPVNRKYPLEQLIPACAEY-ARR 219 Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTF 337 RR++FEY++L G+NDSP A L +L G+ +NLIP NP P Y + + TF Sbjct: 220 TGRRVSFEYILLGGVNDSPELARELSDLLTGLLGHVNLIPANPVPESGYRAPSPEAVRTF 279 Query: 338 SECIKRSGYSSPIRTPRGLDILAACGQLK 366 ++ G +R G DI AACGQL+ Sbjct: 280 RRVLEEGGVPVSLRRELGADIGAACGQLR 308 >gi|283797835|ref|ZP_06346988.1| radical SAM enzyme, Cfr family [Clostridium sp. M62/1] gi|291074523|gb|EFE11887.1| radical SAM enzyme, Cfr family [Clostridium sp. M62/1] Length = 376 Score = 215 bits (548), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 127/355 (35%), Positives = 200/355 (56%), Gaps = 33/355 (9%) Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH--FSIIYP 73 ELE L ++G R Q+++W++V+ F M+++S+ +R L + ++ + P Sbjct: 42 ELEAYLKEMGEKP----FRAKQLYQWMHVKLAASFDEMTNLSKGLRETLGRQCFYASLTP 97 Query: 74 EIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132 VD +IS DGTRK+L G V IE+V + K ++C+SSQVGC + C FC Sbjct: 98 --VDVRISAVDGTRKYLFELS----DGNV-IESVLMRYKHGNSVCISSQVGCRMGCRFCA 150 Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192 + L RNL E+L Q+ + G ++SN+V+MG GEP+ Sbjct: 151 STLDGLERNLKPSEMLEQIY-----------------RIQRDTGERVSNVVVMGSGEPMD 193 Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLR 251 N+DN+ + + + +D GL+ S+R +T+ST G VP I + EE + V LA+SLHA ++++R Sbjct: 194 NYDNLIRFIHLLTDENGLNISQRNVTVSTCGIVPRIRQFAEEGLQVTLALSLHAPNDEVR 253 Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311 L+P+ + Y L ++DAC HY RR+TFEY ++KG+ND+ +A L +++K Sbjct: 254 KTLMPVAKSYALRDVLDAC-HYYFEKTGRRLTFEYSLVKGVNDNLEEARALAELIKDQHG 312 Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +NLIP NP +Y SD+K I F ++R G + +R G DI ACGQL+ Sbjct: 313 HVNLIPVNPIKERDYKQSDRKAIEDFKNYLERRGINVTVRREMGRDIDGACGQLR 367 >gi|182412656|ref|YP_001817722.1| radical SAM protein [Opitutus terrae PB90-1] gi|205829647|sp|B1ZVM5|RLMN2_OPITP RecName: Full=Ribosomal RNA large subunit methyltransferase N 2; AltName: Full=23S rRNA m2A2503 methyltransferase 2 gi|177839870|gb|ACB74122.1| radical SAM enzyme, Cfr family [Opitutus terrae PB90-1] Length = 428 Score = 215 bits (548), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 136/375 (36%), Positives = 202/375 (53%), Gaps = 34/375 (9%) Query: 16 ELEEALLKIGIPQRHVR-MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 + A L++ + +R + + ++IW ++Y+ + F M+++ VR L + + Sbjct: 57 DFTRAELRLWLSRRELNPVHAARIWSYLYLDLVEGFGAMTELPARVRARLEAEMCVGNLK 116 Query: 75 IVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133 I E S DG TRK+LL + IETV + R T CVSSQVGC++ C FC T Sbjct: 117 IARETDSRDGFTRKYLLE-----LADGAAIETVLMRFAGRATACVSSQVGCAMGCVFCAT 171 Query: 134 GTQKLVRNLTAEEILLQ-VLLARSL-LGDFPGCEDIEGMVIPSVGR-------------- 177 G R+LTA EI+ Q V +AR+L F C M PS GR Sbjct: 172 GQMGYTRHLTAGEIVAQAVHVARALRTAAFEKCHV---MRDPSPGREAGEKSRDEADRHR 228 Query: 178 -----KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV- 231 ++ N+V+MGMGEPL N++ V +++ I D GL+ RITLST G VP I R+ Sbjct: 229 APPTPRLRNLVLMGMGEPLHNYEAVMRAVDILRDDGGLALGAERITLSTVGVVPGILRLA 288 Query: 232 GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291 E+ V LA+SLHA + R LVP+ +K+PL+ L+ ACR Y + RR+ +E+ +++G Sbjct: 289 AEKRPVHLAVSLHAADQEERAALVPVAKKWPLDELMAACRTY-SETTGRRVFYEWTLIEG 347 Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRS-GYSSPI 350 ND+ A + ++L+G+PA++NLIP NP G + + F E + R S + Sbjct: 348 RNDTAAHARAVGRLLRGLPAQVNLIPLNPTAGYDGTPGRTEAARRFQEILSREFALPSTV 407 Query: 351 RTPRGLDILAACGQL 365 R RG+DI A CGQL Sbjct: 408 RQRRGIDIAAGCGQL 422 >gi|313676931|ref|YP_004054927.1| 23S rRNA m(2)a-2503 methyltransferase [Marivirga tractuosa DSM 4126] gi|312943629|gb|ADR22819.1| 23S rRNA m(2)A-2503 methyltransferase [Marivirga tractuosa DSM 4126] Length = 360 Score = 215 bits (548), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 123/337 (36%), Positives = 189/337 (56%), Gaps = 26/337 (7%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI++W++++ F+ M+++S+ +R L+Q++ I I D+++S D T K R Sbjct: 42 FRAKQIYEWLWMKSAASFEEMTNLSKNLREWLDQNYCINRITIADKQLSSDRTIKVAFR- 100 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + E+E V IP ++R T CVSSQVGCSL+C FC TG K +RNL A EI QV+ Sbjct: 101 ----LHDGNEVEGVLIPTENRMTACVSSQVGCSLSCKFCATGYLKRMRNLEAAEIYDQVV 156 Query: 153 LARSLLG---DFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209 + + L D P +SNIV MGMGEPL N+ N+ +S+ + G Sbjct: 157 MIKELAETHYDMP----------------LSNIVYMGMGEPLLNYKNMMESIEHITSEKG 200 Query: 210 LSFSKRRITLSTSGFVPNIARVGEEIGVM-LAISLHAVSNDLRNILVPINRKYPLEMLID 268 L S +RIT+ST+G I ++ ++ LA+SLHA +++ R+ ++ IN L +L + Sbjct: 201 LHMSPKRITVSTAGISKMIKKLADDDAKFNLALSLHAANDEKRSQIMSINDSNNLPVLRE 260 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 A +Y + R+TFEY + NDS DA L + K +PAK+NLI +NP ++ Sbjct: 261 ALEYYHSKT-KNRVTFEYCVFNNFNDSLEDAKELWQFTKYVPAKVNLIEYNPIDQADFTN 319 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +D+ + F+ ++ G +R RG DI AACGQL Sbjct: 320 TDEDKLDKFAAFLEDRGVIVNVRRSRGKDIDAACGQL 356 >gi|126649673|ref|ZP_01721909.1| Radical SAM family enzyme [Bacillus sp. B14905] gi|126593392|gb|EAZ87337.1| Radical SAM family enzyme [Bacillus sp. B14905] Length = 380 Score = 215 bits (548), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 126/363 (34%), Positives = 204/363 (56%), Gaps = 25/363 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 KES+ +LEE L + G R +QI+ W+Y + ++ F+ MS++S+ +R L Sbjct: 34 KESIYSFQPHQLEEWLKENG----EKPFRAAQIFDWLYNKRVKTFEEMSNLSKGLRDKLA 89 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +F++ + ++ S DGT K+L + + IETV + + ++CV++QVGC Sbjct: 90 ANFALSTLSTIIKQESKDGTIKFLFQ-----LQDGYSIETVLMRHEYGNSVCVTTQVGCR 144 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC + L R+L A EI+ QV+ + L + V ++S+IV+M Sbjct: 145 IGCTFCASTLGGLKRHLLAGEIVEQVVKVQQTLDE--------------VSERVSHIVIM 190 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLH 244 G+GEP N+D + L + + GL+ R IT+STSG VP I + E++ + A+SLH Sbjct: 191 GIGEPFDNYDAMMNFLKVINHEKGLNIGARHITVSTSGIVPKIYQFADEQLQINFAVSLH 250 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A + + R L+PI R Y LE L++A R+Y RR++FEY ++ G NDS A L Sbjct: 251 APNQEARQKLMPIARAYKLEELMEAVRYYTK-KTGRRVSFEYGLMSGENDSVEIAEELSA 309 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 ++KGI +NLIP N P +Y+ + + I F + +K++G + IR +G DI AACGQ Sbjct: 310 LIKGIKCHVNLIPVNYVPERDYVRTSRSQIFAFEKTLKKNGINVTIRREQGSDIAAACGQ 369 Query: 365 LKS 367 L++ Sbjct: 370 LRA 372 >gi|260911598|ref|ZP_05918183.1| cfr family radical SAM enzyme [Prevotella sp. oral taxon 472 str. F0295] gi|260634304|gb|EEX52409.1| cfr family radical SAM enzyme [Prevotella sp. oral taxon 472 str. F0295] Length = 355 Score = 215 bits (548), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 128/364 (35%), Positives = 197/364 (54%), Gaps = 30/364 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+G +EL+ + G+P Q+ W+Y + + + M++IS+ R L QH+ Sbjct: 8 LLGHTLDELKAIAVDNGLPA----FAGKQMAVWLYDKHVDTIEEMTNISKANREKLAQHY 63 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 I + +D + S DGT K+L FP G +ETVYIP++ R TLCVS QVGC + C Sbjct: 64 EIGAAKFIDAQYSKDGTIKYL--FPTE--SGKF-VETVYIPDRDRATLCVSCQVGCKMNC 118 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG Q NLTA +IL Q+ +P +K++NIV MG G Sbjct: 119 LFCQTGKQGFEGNLTARDILNQIY------------------ALPE-QQKLTNIVFMGQG 159 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN 248 EP+ N DNV K I + G ++S +RIT+S+ G + R +E +AIS+H Sbjct: 160 EPMDNLDNVLKVTQILTADYGYAWSPKRITVSSVGVKGKLKRFLDESDCHVAISMHTPIP 219 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 + R ++P + +E ++ + Y ++ RR++FEY+M G+ND+P A L+K+++G Sbjct: 220 EQRASIMPAEKGLSIEEIVQLLKQYD-FTHQRRLSFEYIMFGGLNDTPLHARQLVKLVEG 278 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 + ++NLI F+ P SD+K + TF + + G + IR RG DI AACG L S Sbjct: 279 LDCRVNLIRFHQIPNVNLNNSDEKRMETFRDYLTNHGVFTTIRASRGQDIFAACGLL-ST 337 Query: 369 SKRI 372 +K+I Sbjct: 338 AKQI 341 >gi|254519239|ref|ZP_05131295.1| radical SAM protein [Clostridium sp. 7_2_43FAA] gi|226912988|gb|EEH98189.1| radical SAM protein [Clostridium sp. 7_2_43FAA] Length = 343 Score = 215 bits (548), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 127/336 (37%), Positives = 192/336 (57%), Gaps = 26/336 (7%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISC-DGTRKWLLR 91 R Q++ WIY + I +F M ++ + + L +F I PE+V++ S DGT+K LL Sbjct: 24 FRAKQVFSWIY-KNIWNFDDMKNLPKSLVEKLKGNFYIGIPEVVEKYESTLDGTQKLLLA 82 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 F I IE+V + K ++C+S+Q+GC + C FC + + VRNLT+ EIL +V Sbjct: 83 FDDGNI-----IESVIMKYKHGNSICISTQIGCRMGCKFCASTLEGRVRNLTSGEILSEV 137 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 ++A+ ++G+ +ISNIV+MG GEPL N++NV K L + + GL+ Sbjct: 138 IIAQKVIGE-----------------RISNIVLMGSGEPLDNYENVTKFLDLVNADYGLN 180 Query: 212 FSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 +R ITLST G VP I + ++ + LAISLHA S++ R ++PI KY ++ +++AC Sbjct: 181 IGQRHITLSTCGLVPKIYELADKGYSITLAISLHAFSDEKRREIMPIANKYSIKEILEAC 240 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 +Y + RRITFEY ++ GIND DA +L K+LKG +NLIP N Sbjct: 241 DYYFEKT-GRRITFEYSLVSGINDGKEDAKSLSKLLKGRQCHVNLIPVNEIKENTLKRPS 299 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +K I F + + +G +R G DI AACGQL+ Sbjct: 300 KKTIEEFEKIVNENGIEVTVRREMGNDINAACGQLR 335 >gi|89895437|ref|YP_518924.1| hypothetical protein DSY2691 [Desulfitobacterium hafniense Y51] gi|123279892|sp|Q24U12|RLMN_DESHY RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|89334885|dbj|BAE84480.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 357 Score = 215 bits (548), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 134/376 (35%), Positives = 206/376 (54%), Gaps = 37/376 (9%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN +K+ + + EL + ++G+P + R Q+++W+ + +++++ + +I Sbjct: 1 MNTMKRMDCRDLNQSELTQHCAELGLP----KFRGRQVFQWVQQKAVQNWEELKNIGAGD 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYI-----PEKSRGT 115 R L + V E+IS DGTRK+L R C G +E V + + R T Sbjct: 57 RQKLQDGLFLQPLRKVREQISQDGTRKFLFR----CADGET-LECVLMDYDRRKNRDRHT 111 Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL----LARSLLGDFPGCEDIEGMV 171 +CVS+Q+GC++ C+FC TG RNL+ EIL QVL L R DF Sbjct: 112 VCVSTQIGCAVGCAFCATGLGGWRRNLSPGEILGQVLDITYLMRQEDPDF---------- 161 Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231 +++NIV MGMGEPL N++ V K++ + +D G RR+T+STSG P I ++ Sbjct: 162 ------QVTNIVFMGMGEPLLNYEAVLKAIELLNDPEGQGIGMRRMTISTSGVAPKIRQL 215 Query: 232 GEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 ++ V LA+SLH+ N R+ L+P+NRKYPLE L++ACR Y L+N RRITFE ++ Sbjct: 216 AKDNPQVGLAVSLHSAHNTTRDQLIPMNRKYPLEELMEACRDYTTLTN-RRITFEIALIS 274 Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI 350 G + A + +LK A +NLIP NP G K++ F++C++ G + Sbjct: 275 G-QATLEAAQAVGHLLKRQLAHVNLIPVNPVAGTGMARPTAKEVQQFAQCLESMGIPVSV 333 Query: 351 RTPRGLDILAACGQLK 366 R +G DI AACGQL+ Sbjct: 334 REEKGTDIDAACGQLR 349 >gi|156743521|ref|YP_001433650.1| ribosomal RNA large subunit methyltransferase N [Roseiflexus castenholzii DSM 13941] gi|205829869|sp|A7NPY6|RLMN_ROSCS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|156234849|gb|ABU59632.1| radical SAM enzyme, Cfr family [Roseiflexus castenholzii DSM 13941] Length = 399 Score = 215 bits (548), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 140/384 (36%), Positives = 207/384 (53%), Gaps = 46/384 (11%) Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL--NQHFSIIYP 73 E+E L G P R Q+++ +YV M+D+ +R L + + P Sbjct: 22 EMERLLTDWGQPT----YRARQVFRQLYVNLADTPLAMTDLPLALRERLANETRLAPVTP 77 Query: 74 EIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132 E V + + +G TRK L R P + +E+V + R T+CVS+Q GC++ C FC Sbjct: 78 EQV--QTADNGLTRKALFRLPNGAL-----VESVLMIYLDRATVCVSTQAGCAMGCVFCA 130 Query: 133 TGTQKLVRNLTAEEILLQVLLA----RSLLGDFP-------------GCEDIEGMV--IP 173 TGT L+RNL+ EI+ QV+ A R L G P +D+E +P Sbjct: 131 TGTLGLLRNLSPGEIVAQVVWAAREMRRLAGRPPRPTMRQPEDDAWWSPDDLENDAPSVP 190 Query: 174 SVG--RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231 V ++NIV MGMGEP +D +++ I D GL+ R +T+ST G VP I R+ Sbjct: 191 EVSSVSHVTNIVFMGMGEPFATYDRWWRAVEIIHDPRGLNIGARSMTVSTVGLVPGIRRL 250 Query: 232 G-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 E + + LA+SLHA +DLR+ L+PINR+YPL +L+DA R Y + RR++FEYV+L+ Sbjct: 251 ATETLPINLAVSLHAPDDDLRSALMPINRRYPLAVLLDATRDYLA-ATGRRVSFEYVLLQ 309 Query: 291 GINDSPRDALNLIKILK------GIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341 G ND P A L +L+ G+P +NLIP+NP PG S+++ ++TF + Sbjct: 310 GKNDEPEHAAKLAALLRGEAGPAGLPLHLVHVNLIPWNPVPGMPLGRSERRRVLTFQRIL 369 Query: 342 KRSGYSSPIRTPRGLDILAACGQL 365 + G + +R RG+ I AACGQL Sbjct: 370 RERGIACTVRVERGVAIAAACGQL 393 >gi|319649619|ref|ZP_08003775.1| hypothetical protein HMPREF1013_00379 [Bacillus sp. 2_A_57_CT2] gi|317398781|gb|EFV79463.1| hypothetical protein HMPREF1013_00379 [Bacillus sp. 2_A_57_CT2] Length = 361 Score = 215 bits (548), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 117/340 (34%), Positives = 191/340 (56%), Gaps = 21/340 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI+ W+Y + I F+ M+++S+ +R L+ +FS+ + + ++ S DGT K+L Sbjct: 38 FRAEQIFDWLYTKRITSFEDMTNLSKGLRDTLSANFSLTTLKTIIQQESADGTIKFLFE- 96 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + IETV + ++CV++QVGC + C+FC + L RNL A EI+ QV+ Sbjct: 97 ----LHDGYSIETVLMRHDYGNSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVAQVV 152 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 + L + ++S++V+MG+GEP N+D++ L I + GL+ Sbjct: 153 KVQQALDE--------------TDERVSSVVIMGIGEPFDNYDSMLSFLKIINHDKGLNI 198 Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 R IT+STSG +P I + +E + + AISLHA + ++R+ L+PINR Y L L+D+ R Sbjct: 199 GARHITVSTSGIIPKIYKFADENMQINFAISLHAPNTEIRSRLMPINRAYKLPDLMDSIR 258 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 +Y RR++FEY + G+ND A L K++K + +NLIP N P +Y+ + + Sbjct: 259 YYIN-KTGRRVSFEYGLFGGVNDQVEHAEELAKLIKNVKCHVNLIPVNYVPERDYVRTPK 317 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 I F + +K G + IR G DI AACGQL++ ++ Sbjct: 318 DQIFAFEKTLKNHGINVTIRREHGHDIDAACGQLRAKERK 357 >gi|94968595|ref|YP_590643.1| hypothetical protein Acid345_1567 [Candidatus Koribacter versatilis Ellin345] gi|122986342|sp|Q1IRD1|RLMN_ACIBL RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|94550645|gb|ABF40569.1| 23S rRNA m(2)A-2503 methyltransferase [Candidatus Koribacter versatilis Ellin345] Length = 346 Score = 215 bits (548), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 131/350 (37%), Positives = 203/350 (58%), Gaps = 38/350 (10%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH-FSIIYPEIVDEKISCDGTRKWLLRF 92 R+ Q+W+ +Y I + + +R L ++I +P + S DGT ++LL+F Sbjct: 10 RSRQLWQGLYRDRIASLDQFTTLPIPLREELKSSGWAIAFPFVQKRFTSTDGTVRYLLQF 69 Query: 93 PARCIGGPVEIETVYIPEK---------------SRGTLCVSSQVGCSLTCSFCYTGTQK 137 +ETV++PE R T+CVSSQVGC++ C FC T Sbjct: 70 -----SDGQSVETVWMPEGDGGEQGDGSEDGPSYDRATICVSSQVGCAVDCQFCMTALLG 124 Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197 L+RNL+A EI+ Q+L ++L D E+++ V + N+V MG GEP NFDN Sbjct: 125 LLRNLSAGEIVGQIL---AVLKD----ENVD------VEKSRINLVFMGQGEPFLNFDNF 171 Query: 198 KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVP 256 K++++ ++++G+ S R+T+STSG VP I G+ I LAISL+A +++ R L+P Sbjct: 172 VKAVTLLAEAVGIPES--RMTVSTSGIVPRIVDFGQLAIRPKLAISLNASNDESRRELMP 229 Query: 257 INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLI 316 I +K+ LE L+ A R +P L N R+TFEYV+L G+NDS ++A ++++L+G+ AK+NLI Sbjct: 230 ITKKWTLEKLMSAAREFP-LRNRERMTFEYVLLGGVNDSEQNAREVVQLLRGLRAKVNLI 288 Query: 317 PFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +NP P + D + + F + + +G + IR PRG DI AACGQLK Sbjct: 289 AWNPGPEIPFSTPDPQHVEAFQQILIDAGIPTFIRKPRGRDIFAACGQLK 338 >gi|298245810|ref|ZP_06969616.1| radical SAM enzyme, Cfr family [Ktedonobacter racemifer DSM 44963] gi|297553291|gb|EFH87156.1| radical SAM enzyme, Cfr family [Ktedonobacter racemifer DSM 44963] Length = 388 Score = 215 bits (548), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 136/351 (38%), Positives = 196/351 (55%), Gaps = 31/351 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISC--DGTRKWLL 90 R QI+ WIY + + +F MS++ ++R L + + I P +V ++S D TRK LL Sbjct: 41 FRAKQIYSWIYQQLVDNFAAMSNLPLKLRQRLEEE-ACIGPLVVRSEVSSKDDRTRKILL 99 Query: 91 RFPARCIGGPVE-IETVYIP---EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEE 146 G +E + +Y P +R T+CVSSQ GC+ C+FC TG R+L + E Sbjct: 100 EL---ADGKLIESVLMLYPPLGESSARATICVSSQAGCAFGCTFCATGQMGFDRHLQSGE 156 Query: 147 ILLQVL-LARSL------LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199 I+ QVL AR L PG I+ I+NIV+MGMGEPL N+DNV + Sbjct: 157 IIAQVLHFARELRATPWSAAGLPGSTPID---------HITNIVLMGMGEPLHNYDNVLQ 207 Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPIN 258 +L I + + G + R +T+ST G VP I ++ E++ V LAISLHA +N+ R+ +P+N Sbjct: 208 ALRILNSAAGFNLGARHMTVSTVGLVPAIRKLSQEQLQVNLAISLHAPTNEARSQTMPVN 267 Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLI 316 RKYPLE L+ AC+ Y + R++TFEYV+L G+ND+P A L ++L + A +N I Sbjct: 268 RKYPLEELLAACQDYIAATR-RQVTFEYVLLAGVNDTPERAQQLAELLAPLKQFAHVNCI 326 Query: 317 PFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 P N Y I F + G S+ +R RG DI AACGQL++ Sbjct: 327 PVNA-TSAGYRPPGPDAIRAFRNILFERGISNSVRAERGDDIAAACGQLRT 376 >gi|227484655|ref|ZP_03914971.1| Fe-S-cluster redox enzyme [Anaerococcus lactolyticus ATCC 51172] gi|227237375|gb|EEI87390.1| Fe-S-cluster redox enzyme [Anaerococcus lactolyticus ATCC 51172] Length = 340 Score = 215 bits (548), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 123/340 (36%), Positives = 189/340 (55%), Gaps = 26/340 (7%) Query: 30 HVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE-KISCDGTRKW 88 + + R Q+++ I+V + DF M+D+ ++R L F +++ + D T+K+ Sbjct: 21 YQKFRAKQVFRAIHVNRLNDFDEMTDLPLKMREDLKADFKFERIKVLKTFESKIDSTKKY 80 Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 LL P + I +E VY+ K R T+C+SSQVGC + CSFC + LVRN+TA E++ Sbjct: 81 LLELPDKNI-----VEAVYMDYKDRSTICISSQVGCRMGCSFCASTKNGLVRNMTASELI 135 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 +V L L G ISNIV+MG+GEPL NFD++KK + I +D Sbjct: 136 EEVYLLERLNG------------------PISNIVIMGIGEPLDNFDHIKKFIEIITDPS 177 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267 G + S R ITLSTSG P I + + + V LA+SLH + R + +P+ +KY ++ LI Sbjct: 178 GRNLSHRSITLSTSGLSPRIKDLADTGLDVNLALSLHYADDKKRAVYMPVAKKYSIKDLI 237 Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL 327 DA +Y RR++FEYV++ G+N+ D NL +L G INLIP NP + Sbjct: 238 DATDYYFD-KTGRRVSFEYVVIDGVNNLTEDVENLRDLLFGKNVHINLIPLNPIEEFNHK 296 Query: 328 CSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 + + F + + + G ++ IR G+DI A+CGQL++ Sbjct: 297 KPGARVLEDFKQRLIKRGLNATIRRSMGIDIDASCGQLRN 336 >gi|323141165|ref|ZP_08076066.1| 23S rRNA m2A2503 methyltransferase [Phascolarctobacterium sp. YIT 12067] gi|322414308|gb|EFY05126.1| 23S rRNA m2A2503 methyltransferase [Phascolarctobacterium sp. YIT 12067] Length = 351 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 131/357 (36%), Positives = 200/357 (56%), Gaps = 28/357 (7%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII--Y 72 EEL++ + G+ + R Q+++W+Y + + DF M ++S+ +L + F+++ Sbjct: 10 EELQDLFVAAGLK----KFRAKQVFQWLYQKSVFDFTAMHNLSKADIAVLQEKFTVLPHS 65 Query: 73 PEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131 EI+ E+ S DG T K LL P G VE TV + ++CVSSQVGC + C+FC Sbjct: 66 LEILREQNSSDGMTSKLLLGLPD---GNSVE--TVLMHHDYGYSVCVSSQVGCDMHCAFC 120 Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191 +G + VRNLTA EI+ QV L L + G +S +V+MG GEP+ Sbjct: 121 ASGLKGAVRNLTAAEIVAQVYLFNERLRE--------------QGAMVSRVVVMGSGEPM 166 Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDL 250 NFD+V ++L + S R +T+ST G +P I R+ E+ + LAISLHAV N+L Sbjct: 167 LNFDSVLQALDFLHREDTCNMSYRNMTISTCGIIPGIKRLEEQGNPINLAISLHAVKNEL 226 Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310 R L+P+N+ YP ++ A Y S R+IT+EY++LKG NDSP+DA L L+ Sbjct: 227 RTALMPVNKGYPFVDVLTAAESYSKAS-GRQITYEYILLKGKNDSPQDAELLSNYLRYKQ 285 Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 A +NLIP NP P + + + F ++++ ++ +R G DI AACGQL++ Sbjct: 286 ASVNLIPANPVPEQGFERPSKAAVERFLRILQKNRINATVRKEMGKDIDAACGQLRA 342 >gi|190150594|ref|YP_001969119.1| hypothetical protein APP7_1325 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189915725|gb|ACE61977.1| hypothetical protein APP7_1325 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 274 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 118/270 (43%), Positives = 165/270 (61%), Gaps = 20/270 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+E+ E ++G R Q+ KWIY G +F MS+I++ +R L Sbjct: 25 EKINLMNLTRQEMRELFAEMG----EKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKL 80 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q I PE+ E+ S DGT KW ++ G +IETVYIPE R TLCVSSQVGC Sbjct: 81 KQIAEIKAPEVSVEQRSSDGTIKWAMQV------GDQQIETVYIPEDDRATLCVSSQVGC 134 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNLT EI+ QV A ++G+F + G+ R I+N+VM Sbjct: 135 ALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNF----GVTGV------RPITNVVM 184 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D SKRR+TLST+G VP + + E+I V LAISLH Sbjct: 185 MGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKIDVALAISLH 244 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYP 274 A +++LR+ ++PIN+KY ++ML+D+ YP Sbjct: 245 APNDELRDEIMPINKKYNIKMLMDSVHKYP 274 >gi|205373324|ref|ZP_03226128.1| YloN [Bacillus coahuilensis m4-4] Length = 362 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 115/340 (33%), Positives = 195/340 (57%), Gaps = 21/340 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R +Q+++W+Y++ + F+ M+++S+ +R L + F + + + ++ S DGT K+L Sbjct: 39 FRAAQVFEWLYIKRVTSFEDMTNLSKPLRDKLTESFEMTTLKTLIQQQSSDGTIKFLFE- 97 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + IETV + + ++CV++QVGC + C+FC + L RNL A EI+ QVL Sbjct: 98 ----LHDGYSIETVLMRHEYGNSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVAQVL 153 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 + L + ++S++V+MG+GEP N++++ L ++ GL+ Sbjct: 154 KVQQALDE--------------TEERVSSVVIMGIGEPFDNYESMMSFLRTINNEKGLNI 199 Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 R IT+STSG +P I + +E + AISLHA + +LR+ L+PINR Y L L+DA + Sbjct: 200 GARHITVSTSGIIPKIYKFADEKTQINFAISLHAANTELRSRLMPINRAYKLPDLMDAVK 259 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 +Y RR++FEY + G+NDS A L ++K + INLIP N P +Y+ + + Sbjct: 260 YYID-KTGRRVSFEYGLFGGVNDSVEHAEELADLVKDVKCHINLIPVNYVPERDYVRTPK 318 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 + I F + +K+ G + IR +G DI AACGQL++ ++ Sbjct: 319 EKIFEFEKALKKRGVNVTIRREQGHDIDAACGQLRAKERK 358 >gi|149180610|ref|ZP_01859114.1| hypothetical protein BSG1_16675 [Bacillus sp. SG-1] gi|148851763|gb|EDL65909.1| hypothetical protein BSG1_16675 [Bacillus sp. SG-1] Length = 358 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 140/377 (37%), Positives = 214/377 (56%), Gaps = 32/377 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K S+ G+ ++L +++ G + R +QIW W+Y + + +F M +I L Sbjct: 1 MEKNSIYGLTIDQLTSWIVENG----EKKFRAAQIWDWLYKKRVTNFADMKNIGANCITL 56 Query: 64 L--NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L N H + EI E S DGT K+L + + IETV + ++CV++Q Sbjct: 57 LEENFHLGTLKEEIKQE--SKDGTIKFLFKLQDGNL-----IETVLMKFNYGYSVCVTTQ 109 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC++ CSFC +G K R+L++ EI+ Q++ + L D G ++ ++S+ Sbjct: 110 VGCNIGCSFCASGLLKKNRDLSSGEIVEQIMNVQLHL-DSKGNDE-----------RVSH 157 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240 IV+MG+GEP N+DN+ L + +D GLS R IT+STSG I +E I V LA Sbjct: 158 IVVMGIGEPFDNYDNLMDFLRVVNDQKGLSIGARHITVSTSGLANRIYDWADENIQVNLA 217 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA +N+LR ++ IN+ YPLE L+ A +Y +N RRITFEY++L+ +ND +AL Sbjct: 218 VSLHAPNNELRTQIMKINKAYPLEKLMPAIDYYLEKTN-RRITFEYILLQDVNDHKAEAL 276 Query: 301 NLIKILKGIP--AKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 L K+LK + +NLIP+NP +Y S ++ IV F + G + +RT G D Sbjct: 277 QLAKLLKNKKHLSYVNLIPYNPVDEHGQYQRSTKEAIVEFYGTLLDQGINCGVRTEHGTD 336 Query: 358 ILAACGQLKSLSKRIPK 374 I AACGQL+ SK+I K Sbjct: 337 IDAACGQLR--SKQIKK 351 >gi|225377867|ref|ZP_03755088.1| hypothetical protein ROSEINA2194_03526 [Roseburia inulinivorans DSM 16841] gi|225210305|gb|EEG92659.1| hypothetical protein ROSEINA2194_03526 [Roseburia inulinivorans DSM 16841] Length = 347 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 123/338 (36%), Positives = 193/338 (57%), Gaps = 29/338 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL--NQHFSIIYPEIVDEKIS-CDGTRKWL 89 R QI++W++V+ F M++IS+ + L N H I E V +IS DGTRK+L Sbjct: 29 FRAKQIYQWLHVKQAASFDEMTNISKALIEKLKENSHLVSIKQEAV--QISKIDGTRKYL 86 Query: 90 LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149 G V IE+V++ K ++C+SSQVGC + C FC + LVR LT E+L Sbjct: 87 FLLD----DGNV-IESVFMRYKHGNSVCISSQVGCRMGCRFCASTLDGLVRGLTPSEMLD 141 Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209 Q+ + G ++SN+V+MG GEP+ NFDN+ K + + +D G Sbjct: 142 QIY-----------------QIGRDTGERVSNVVVMGTGEPMDNFDNLLKFIELLTDENG 184 Query: 210 LSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 L+ S+R +T+ST G VP + + ++ + + LA+SLHA + + R L+P+ KY + +ID Sbjct: 185 LNISQRNVTVSTCGIVPRMRELADKKLQITLALSLHASTQEKRLELMPVANKYEIHEVID 244 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 AC++Y + RR+TFEY ++ G+ND+ D NL +++KGI +NLIP NP +Y+ Sbjct: 245 ACKYYFEQT-GRRVTFEYSLVGGVNDTDEDVRNLCRLIKGINCHVNLIPVNPIKERDYVQ 303 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 D + F ++++G ++ IR G DI ACGQL+ Sbjct: 304 PDVRVTTEFKNKLEKNGINATIRREMGRDIDGACGQLR 341 >gi|126700199|ref|YP_001089096.1| radical SAM protein [Clostridium difficile 630] gi|255101744|ref|ZP_05330721.1| radical SAM protein [Clostridium difficile QCD-63q42] gi|255307613|ref|ZP_05351784.1| radical SAM protein [Clostridium difficile ATCC 43255] gi|123066578|sp|Q182S0|RLMN_CLOD6 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|115251636|emb|CAJ69469.1| putative radical SAM-family protein [Clostridium difficile] Length = 343 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 126/338 (37%), Positives = 196/338 (57%), Gaps = 30/338 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI---VDEKISCDGTRKWL 89 R SQI+ WIY +G + F M++I + +R+ L + I + +I ++ K+ D T+K+L Sbjct: 28 FRGSQIFSWIY-KGAKTFDDMNNIPKSLRNKLEEVSCIGHIDIELKLESKV--DNTKKYL 84 Query: 90 LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149 I IETV + SR T+CVS+QVGC + C+FC + L+RNL EIL Sbjct: 85 FLLDDGNI-----IETVMMDYDSRVTVCVSNQVGCRMGCNFCASTMDGLIRNLEPWEILD 139 Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209 QV+ + G+++SN+V+MG GEPL NF+N K+ L I ++ G Sbjct: 140 QVI-----------------KIQEDTGKRVSNLVLMGSGEPLDNFENTKQFLKIINEKNG 182 Query: 210 LSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 L+ R ITLST G VP + + + EI + LA+SLH+ ++ R ++P+ Y +E +++ Sbjct: 183 LNIGYRHITLSTCGIVPKMYELADLEIAINLALSLHSPYDEERRKIMPVANAYSIEEILN 242 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 ACR+Y +N RR+TFEY ++KG+NDS ++A L K+LKG+ +NLIP N EY Sbjct: 243 ACRYYIKKTN-RRVTFEYSLIKGVNDSEKEAKALAKLLKGMLCHVNLIPINKVEEREYEK 301 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 D+ I F + ++++ + +R G DI ACGQL+ Sbjct: 302 PDKAFIYKFRDSLEKNNIPATVRMSMGSDISGACGQLR 339 >gi|291527115|emb|CBK92701.1| 23S rRNA m(2)A-2503 methyltransferase [Eubacterium rectale M104/1] Length = 354 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 123/365 (33%), Positives = 206/365 (56%), Gaps = 31/365 (8%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 M +EL E ++ +G + R QI++WI+V+ + F M++IS++ +L + +I Sbjct: 14 MNMDELTEFIISLG----EKKFRAKQIYEWIHVKHVESFDEMTNISKKFIQVLKDNAILI 69 Query: 72 YPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130 + + ++S DGTRK+L G V IE+V + K ++C+SSQVGC + C F Sbjct: 70 SLKKEEVQVSKLDGTRKYLFALD----DGNV-IESVLMKYKHGNSVCISSQVGCRMGCRF 124 Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 C + LVR L E++ Q+ + +G +ISN+V+MG GEP Sbjct: 125 CASTLDGLVRGLRPSEMIDQIY-----------------QIGKDIGERISNVVVMGTGEP 167 Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSND 249 L N+DN+ + + + +D G++ S+R +T+ST G VP + ++ +E + + LA+SLHA + + Sbjct: 168 LDNYDNLLRFIELLTDENGINISQRNLTVSTCGLVPRMRQLADEKLSITLALSLHASNQE 227 Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309 R L+P+ Y + ++DAC++Y + RR+TFEY ++ G+ND+ DA L ++ G+ Sbjct: 228 KRKALMPVANSYDIHDVVDACKYYFAQT-GRRVTFEYSLVGGVNDTAEDAAELSALVHGM 286 Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369 INLIP NP +Y+ S++ I F ++++G + IR G DI ACGQL+ Sbjct: 287 NCHINLIPVNPIKERDYVQSNKGVIEAFKNRLEKNGINVTIRREMGRDIDGACGQLR--K 344 Query: 370 KRIPK 374 K I K Sbjct: 345 KHIDK 349 >gi|288800113|ref|ZP_06405572.1| radical SAM enzyme, Cfr family [Prevotella sp. oral taxon 299 str. F0039] gi|288333361|gb|EFC71840.1| radical SAM enzyme, Cfr family [Prevotella sp. oral taxon 299 str. F0039] Length = 344 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 124/365 (33%), Positives = 198/365 (54%), Gaps = 29/365 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K++L+GM EL++A+ +G+ + QI KW+Y + + M++IS+ R L Sbjct: 5 KQALLGMSLFELKQAVTNLGMAE----FTAKQIAKWLYSQHVSSIDEMTNISKSNREKLK 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +HF I +D + S DGT K+L FP + G +ETVYIP+K R TLCVSSQVGC Sbjct: 61 EHFYIGCANFIDAQYSKDGTIKYL--FPTQ--SGKF-VETVYIPDKDRATLCVSSQVGCK 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q NLT+ +IL Q+ +P K++NIV M Sbjct: 116 MNCLFCQTGKQGFEGNLTSCDILNQIY------------------SLPERD-KLTNIVFM 156 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 G GEP+ NFDNV ++ I + G ++S +RIT+S+ G + R E +AIS+H Sbjct: 157 GQGEPMDNFDNVLRTTQILTSDYGYAWSPKRITVSSVGVKGKLERFLNESDCHVAISMHN 216 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 R ++P + ++ +++ R+Y ++ RR++FEY++ G+ND+ A ++ + Sbjct: 217 PIASERESIMPAEKGMSIDSIVELLRNYD-FAHQRRLSFEYIIFDGLNDTKEHAQYIVDL 275 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 ++G+ + NLI F+ P +++K + F + + G + IR RG DI AACG L Sbjct: 276 VRGLECRFNLIRFHQIPNVSLNPTNEKKMELFRDYLTSHGVFTTIRASRGQDIFAACGLL 335 Query: 366 KSLSK 370 + K Sbjct: 336 STAKK 340 >gi|238924694|ref|YP_002938210.1| radical SAM enzyme, Cfr family [Eubacterium rectale ATCC 33656] gi|238876369|gb|ACR76076.1| radical SAM enzyme, Cfr family [Eubacterium rectale ATCC 33656] Length = 354 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 123/365 (33%), Positives = 206/365 (56%), Gaps = 31/365 (8%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 M +EL E ++ +G + R QI++WI+V+ + F M++IS++ +L + +I Sbjct: 14 MNMDELTEFIISLG----EKKFRAKQIYEWIHVKHVDSFDEMTNISKKFIQVLKDNAILI 69 Query: 72 YPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130 + + ++S DGTRK+L G V IE+V + K ++C+SSQVGC + C F Sbjct: 70 SLKKEEVQVSKLDGTRKYLFALD----DGNV-IESVLMKYKHGNSVCISSQVGCRMGCRF 124 Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 C + LVR L E++ Q+ + +G +ISN+V+MG GEP Sbjct: 125 CASTLDGLVRGLRPSEMIDQIY-----------------QIGKDIGERISNVVVMGTGEP 167 Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSND 249 L N+DN+ + + + +D G++ S+R +T+ST G VP + ++ +E + + LA+SLHA + + Sbjct: 168 LDNYDNLLRFIELLTDENGINISQRNLTVSTCGLVPRMRQLADEKLAITLALSLHASNQE 227 Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309 R L+P+ Y + ++DAC++Y + RR+TFEY ++ G+ND+ DA L ++ G+ Sbjct: 228 KRKALMPVANSYDIHDVVDACKYYFAQT-GRRVTFEYSLVGGVNDTAEDAAELSALVHGM 286 Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369 INLIP NP +Y+ S++ I F ++++G + IR G DI ACGQL+ Sbjct: 287 NCHINLIPVNPIKERDYVQSNKGVIEAFKNRLEKNGINVTIRREMGRDIDGACGQLR--K 344 Query: 370 KRIPK 374 K I K Sbjct: 345 KHIDK 349 >gi|332826949|gb|EGJ99746.1| ribosomal RNA large subunit methyltransferase N [Dysgonomonas gadei ATCC BAA-286] Length = 335 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 122/347 (35%), Positives = 186/347 (53%), Gaps = 29/347 (8%) Query: 25 GIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDG 84 G+P R QI W+Y + + M++IS R LL++ + + ++ + S DG Sbjct: 14 GLP----RFAAKQIADWVYKKRVTSIDQMTNISVANRALLSEKYDVGRYIPLEFQQSVDG 69 Query: 85 TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTA 144 T K+L + + IE V IPE R TLCVSSQVGC + C FC TG Q NLTA Sbjct: 70 TVKYLFKTENDKL-----IEAVMIPEDDRATLCVSSQVGCKMNCLFCMTGKQGFNGNLTA 124 Query: 145 EEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIA 204 EIL Q+ R ED+ +N+V MGMGEPL N++ +KK+L I Sbjct: 125 NEILNQLYSVRE-------AEDL------------TNVVFMGMGEPLDNYEQLKKTLEIM 165 Query: 205 SDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLE 264 + G+++S +RIT+ST+G P + R +E LAIS+H+ + R ++P + +P+ Sbjct: 166 TADYGMAWSPKRITVSTTGVTPKLKRFLDESNAHLAISIHSPEKEQRLSIMPAEKAFPIA 225 Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGC 324 ++D + Y + RR++FEY+M NDS A L ++L+GI ++NLI F+ P Sbjct: 226 GVMDLLKEYD-WTKQRRLSFEYIMFDNFNDSLVHAKELAQMLRGIECRVNLIRFHAIPNV 284 Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 S ++ + F + + G +S IR RG DI AACG L ++ + Sbjct: 285 NLKTSTKEKMEAFRDYLTSKGVTSTIRASRGEDIFAACGMLSTMKSK 331 >gi|304437062|ref|ZP_07397025.1| cfr family radical SAM enzyme [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370013|gb|EFM23675.1| cfr family radical SAM enzyme [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 346 Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 131/364 (35%), Positives = 202/364 (55%), Gaps = 30/364 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 ++ G M+ EL +AL + GIP R R QI +W+Y RG F M ++ + +R L + Sbjct: 2 NIFGWMKTELADALREEGIP----RFRADQIIRWMYQRGAVSFDVMDNLPKLLRAQLAER 57 Query: 68 FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 FSI P++ S DG T K L F ETV + ++CVS+Q GC + Sbjct: 58 FSIERPQVGARLTSADGATIKLLYAF-----ADGQTAETVLMRHPYGNSVCVSTQAGCRM 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC + L RNLT EI QV+ G D + G ++ IV+MG Sbjct: 113 GCAFCASTLHGLARNLTVGEIAAQVI----------GMAD----YLRQEGARVDTIVVMG 158 Query: 187 MGEPLCNFDNVKKSLSI--ASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 GEP+ N+DNV +L + A +++GLS+ R +TLSTSG VP I R+ EE + + L+ISL Sbjct: 159 SGEPMENYDNVIGALRLLHAEETIGLSY--RGMTLSTSGIVPGILRLAEEGLPISLSISL 216 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA + +LR+ L+P+NR YP+ ++ A Y + RR+T+EY++++ +ND R+A L Sbjct: 217 HAPTEELRSSLMPVNRMYPMAEVLRAAELYAARTK-RRVTYEYILIRDVNDGVREAEQLA 275 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++L+G A +NLIP +P ++ ++ F ++ ++ +R G DI AACG Sbjct: 276 RLLRGQLASVNLIPIDPVAERHLFRPPRETVLRFQRILEAHHVTATVRREMGTDIQAACG 335 Query: 364 QLKS 367 QL+S Sbjct: 336 QLRS 339 >gi|189218104|ref|YP_001938746.1| Radical SAM family enzyme [Methylacidiphilum infernorum V4] gi|189184962|gb|ACD82147.1| Radical SAM family enzyme [Methylacidiphilum infernorum V4] Length = 314 Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 126/300 (42%), Positives = 177/300 (59%), Gaps = 30/300 (10%) Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE-KSRG-----TLCVSSQVGCSLT 127 E++ EK S DGT+K+L + C G IETV IP SRG TLCVS+QVGC+L Sbjct: 2 ELIHEKQSIDGTKKFLWQL---CDGHA--IETVLIPATDSRGSSERLTLCVSTQVGCALG 56 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC +G RNL+ EI+ QVLL+ S+ V +++S+IV MGM Sbjct: 57 CHFCASGLLGFKRNLSCGEIVEQVLLSESI-----------------VKQRVSHIVFMGM 99 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAV 246 GEPL N+D + KS+ + S S G+ S R+IT+STSG P I ++ E + LA+SLHA Sbjct: 100 GEPLLNYDQLIKSIRLISSSWGIGISPRKITISTSGIAPRIRKLALETLPFRLAVSLHAT 159 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 +++LR+ ++PIN KYPL LI +C + ++IT EY+++ G+ND DA L +I Sbjct: 160 TDELRSKIMPINSKYPLSELIKSCEEFCS-RRKQKITLEYILISGLNDRREDAERLARIA 218 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + AK+NLIP+NP + DQK+ ++F +K IR RG DI ACGQL+ Sbjct: 219 TSLRAKVNLIPYNPIERLAWKSPDQKEQLSFFRWLKNKAVQVSIRKERGRDIDGACGQLR 278 >gi|15902720|ref|NP_358270.1| hypothetical protein spr0676 [Streptococcus pneumoniae R6] gi|116516867|ref|YP_816163.1| hypothetical protein SPD_0669 [Streptococcus pneumoniae D39] gi|81588140|sp|Q8DQG7|RLMN_STRR6 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|122278951|sp|Q04LD5|RLMN_STRP2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|15458264|gb|AAK99480.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] gi|116077443|gb|ABJ55163.1| radical SAM enzyme, Cfr family protein [Streptococcus pneumoniae D39] Length = 361 Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 127/368 (34%), Positives = 210/368 (57%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + IV E S DGT K+L P + IETV + + ++CV++QV Sbjct: 58 DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVD 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC + K R+L EI+ Q++L + + E ++S+IV Sbjct: 111 CNIGCTFCASDLIKKQRDLNNGEIVAQIMLVQKYFAERGQDE------------RVSHIV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N++NV + +D G++ R IT+STSG I +E + V LA+S Sbjct: 159 VMGIGEPFDNYNNVLNFVCTINDDKGMAIGARHITVSTSGLAHKIRNFADEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ INR +P+E L A +Y +N RR+TFEY+ML +NDS AL L Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDSVEQALEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++LK I + +NLIP+NP +Y S ++ ++ F + +K+ G + +R G DI Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGGNCVVRQEYGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|291526151|emb|CBK91738.1| 23S rRNA m(2)A-2503 methyltransferase [Eubacterium rectale DSM 17629] Length = 341 Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 123/365 (33%), Positives = 206/365 (56%), Gaps = 31/365 (8%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 M +EL E ++ +G + R QI++WI+V+ + F M++IS++ +L + +I Sbjct: 1 MNMDELTEFIISLG----EKKFRAKQIYEWIHVKHVESFDEMTNISKKFIQVLKDNAILI 56 Query: 72 YPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130 + + ++S DGTRK+L G V IE+V + K ++C+SSQVGC + C F Sbjct: 57 SLKKEEVQVSKLDGTRKYLFALD----DGNV-IESVLMKYKHGNSVCISSQVGCRMGCRF 111 Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 C + LVR L E++ Q+ + +G +ISN+V+MG GEP Sbjct: 112 CASTLDGLVRGLRPSEMIDQIY-----------------QIGKDIGERISNVVVMGTGEP 154 Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSND 249 L N+DN+ + + + +D G++ S+R +T+ST G VP + ++ +E + + LA+SLHA + + Sbjct: 155 LDNYDNLLRFIELLTDENGINISQRNLTVSTCGLVPRMRQLADEKLSITLALSLHASNQE 214 Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309 R L+P+ Y + ++DAC++Y + RR+TFEY ++ G+ND+ DA L ++ G+ Sbjct: 215 KRKALMPVANSYDIHDVVDACKYYFAQT-GRRVTFEYSLVGGVNDTAEDAAELSALVHGM 273 Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369 INLIP NP +Y+ S++ I F ++++G + IR G DI ACGQL+ Sbjct: 274 NCHINLIPVNPIKERDYVQSNKGVIEAFKNRLEKNGINVTIRREMGRDIDGACGQLR--K 331 Query: 370 KRIPK 374 K I K Sbjct: 332 KHIDK 336 >gi|325105966|ref|YP_004275620.1| 23S rRNA m(2)A-2503 methyltransferase [Pedobacter saltans DSM 12145] gi|324974814|gb|ADY53798.1| 23S rRNA m(2)A-2503 methyltransferase [Pedobacter saltans DSM 12145] Length = 351 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 123/334 (36%), Positives = 186/334 (55%), Gaps = 20/334 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R +QI++WI+ + F M++IS+++R L + F I +I + S D T K Sbjct: 30 FRANQIYEWIWKKSATTFDEMTNISKDLRDKLKEIFVINAVKINSSQFSSDKTIK----- 84 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + + IE V IP R T CVSSQVGCSLTC FC TG RNL +EI QV+ Sbjct: 85 NSFILHDTHLIEGVLIPTPERMTACVSSQVGCSLTCKFCATGYMDRKRNLNPDEIYDQVV 144 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 L I+ + G ++NIV MGMGEPL N+ NV KS+ + GL+ Sbjct: 145 L-------------IDKQAKENYGIPLTNIVYMGMGEPLLNYANVLKSIERITSEDGLNM 191 Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 + +RIT+ST+G I ++G++ + LA+SLHA ++ RN ++PIN + L+ L +A + Sbjct: 192 ASKRITVSTAGIAKMIKKLGDDNVKFNLALSLHAANDQKRNEIMPINEQNSLQALAEALK 251 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 ++ + +T+EY++ ND DA L K K IP K+N+I +NP ++ + + Sbjct: 252 YFYAKT-KNPVTYEYIVFNDFNDGIEDARELAKFCKHIPCKVNIIEYNPISFADFANAQE 310 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F+E +++ G ++ IR RG DI AACGQL Sbjct: 311 DKIEAFAEHLRKQGVTTNIRRSRGKDIDAACGQL 344 >gi|238926270|ref|ZP_04658030.1| Fe-S-cluster redox enzyme [Selenomonas flueggei ATCC 43531] gi|238885950|gb|EEQ49588.1| Fe-S-cluster redox enzyme [Selenomonas flueggei ATCC 43531] Length = 346 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 136/364 (37%), Positives = 199/364 (54%), Gaps = 30/364 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 ++ G + EL +AL GIP R R Q+ +W+Y RG F M ++ + +R L Sbjct: 2 NIFGWTKTELADALRAEGIP----RFRADQVIRWMYQRGAVSFDIMDNLPKTLRVRLAAL 57 Query: 68 FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 FSI P+I S DG T K L F ETV + ++CVS+Q GC + Sbjct: 58 FSIERPQIAARLTSTDGATIKLLYAF-----ADGQTAETVLMRHPYGNSVCVSTQAGCRM 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC + LVRNLT EI QV+ G D + G + IV+MG Sbjct: 113 GCAFCASTLHGLVRNLTVGEIAAQVI----------GMAD----YLRQEGAHVDTIVVMG 158 Query: 187 MGEPLCNFDNVKKSLSI--ASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 GEPL N+DNV +L + A D++GLS+ R ITLSTSG VP I R+ EE + + L+ISL Sbjct: 159 SGEPLENYDNVIGALRLLHADDTIGLSY--RGITLSTSGIVPGILRLSEEGMPISLSISL 216 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA + +LR+ L+P+NR YP+ ++ A + Y + RR+T+EY++++ +ND R+A L Sbjct: 217 HAPTEELRSSLMPVNRMYPMADVLRAAQTYAARTK-RRVTYEYILIRDVNDGIREAEQLA 275 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++L+G A +NLIP NP L + + F ++ ++ +R G DI AACG Sbjct: 276 ELLRGQLASVNLIPINPVVERNLLRPSKGTVRRFQRVLEERHITATVRREMGTDIQAACG 335 Query: 364 QLKS 367 QL+S Sbjct: 336 QLRS 339 >gi|295696043|ref|YP_003589281.1| radical SAM enzyme, Cfr family [Bacillus tusciae DSM 2912] gi|295411645|gb|ADG06137.1| radical SAM enzyme, Cfr family [Bacillus tusciae DSM 2912] Length = 360 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 127/361 (35%), Positives = 202/361 (55%), Gaps = 26/361 (7%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L G+ EL L + G P R +Q++ W+Y + + M+++ + +R++L + Sbjct: 17 LYGLTLAELRTWLEEQGEPG----YRAAQLFDWMYKKRVTSVDAMTNLPKALRNVLRERA 72 Query: 69 SIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 + E + ++S DGT K+L R G +ETV + ++CVSSQVGC + Sbjct: 73 RLGTMEELTRQVSKKDGTTKFLFRL----FDGAT-VETVLMRHSYGHSVCVSSQVGCHMG 127 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC + LVRNL A E++ QVL + +L G+++S++V+MG Sbjct: 128 CQFCASTLGGLVRNLEAGEMVEQVLACQRML--------------DQQGQRVSSVVVMGS 173 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 GEPL N+ + + + + GL +R IT+STSG VP I ++ EE + + LA+SLHA Sbjct: 174 GEPLENYGATLRFIRLITADEGLRIGQRHITVSTSGMVPAIRKLAEERLQITLAVSLHAS 233 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++++R+ L+PINR YP+ +L++ACR Y RR+TFEY ++ GIND A L L Sbjct: 234 NDEVRSRLMPINRAYPIAVLLEACREYWE-KTGRRLTFEYALIGGINDRLDQADELADRL 292 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +G+P +NLIP N P + + ++ + F E ++R G S +R G DI AACGQL+ Sbjct: 293 RGLPCHVNLIPVNYVPERRFDRTPRRQVEAFRERLERHGISCTVRREMGADIAAACGQLR 352 Query: 367 S 367 + Sbjct: 353 A 353 >gi|89890089|ref|ZP_01201600.1| radical SAM domain protein [Flavobacteria bacterium BBFL7] gi|89518362|gb|EAS21018.1| radical SAM domain protein [Flavobacteria bacterium BBFL7] Length = 346 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 125/355 (35%), Positives = 196/355 (55%), Gaps = 22/355 (6%) Query: 13 MREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIY 72 +R ++ L + + Q R +Q+++W++ +G F M+++S++ R L +HF I + Sbjct: 8 IRSYTQDQLREYFVDQGQQAFRGNQVYEWLWKKGAHHFDDMTNLSKDTRAFLQEHFVINH 67 Query: 73 PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132 + + S DGT K ++ + + +E+V IP +R T CVSSQVGCSL C FC Sbjct: 68 IRVDHMQRSKDGTIKNAVK-----LHDGLTVESVMIPTPTRTTACVSSQVGCSLNCEFCA 122 Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192 T K +RNL +EI QV+ I+ R +SNIV MGMGEPL Sbjct: 123 TARLKRMRNLNPDEIYDQVVA-------------IDQQSKNYHNRPLSNIVFMGMGEPLM 169 Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAISLHAVSNDL 250 N+ NV KS+ + GL S +RITLSTSG VP + + + LA+SLH+ ++ Sbjct: 170 NYKNVIKSIDKITGDDGLGMSPKRITLSTSG-VPKMMKKLADDRPRFNLALSLHSAIDEK 228 Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310 R ++P N ++PLE + +A R++ + R +T+EYV+ KGIND+ D LI+ K IP Sbjct: 229 RVKIMPFNEQFPLEDIKEALRYWYDKTGTR-VTYEYVVWKGINDTKEDIDALIEFCKVIP 287 Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 K+N+I +N + + ++ + + + R G++ +R RG DI AACGQL Sbjct: 288 CKVNIIEYNSIDDARFEQASKQAVDAYERELNRYGFTVNVRRSRGKDIDAACGQL 342 >gi|225181331|ref|ZP_03734775.1| radical SAM enzyme, Cfr family [Dethiobacter alkaliphilus AHT 1] gi|225167912|gb|EEG76719.1| radical SAM enzyme, Cfr family [Dethiobacter alkaliphilus AHT 1] Length = 347 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 127/367 (34%), Positives = 195/367 (53%), Gaps = 29/367 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K +L+ + EL+E +G P R Q+ W+Y +G + F M+++ + +R Sbjct: 1 MDKVNLLELSTSELQEFFQSLGQPA----FRAKQVMDWLYQQGAQTFNEMTNLPKGLREQ 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L Q + +V E++S DGT K+L P +ETV +P + C+S+QVG Sbjct: 57 LAQKAVPGFLSVVTEQVSEDGTEKYLFALP-----DGQTVETVVLPYDIGFSACISTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC +G VRNLTA EI+ QVL ++ L G+++ ++V Sbjct: 112 CKMGCLFCASGLPGFVRNLTAAEIMAQVLQVKNAL--------------RKRGKELKSLV 157 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI---ARVGEEIGVMLA 240 +MG GEPL NF L D L+ S R +TLSTSG VP I A++G + LA Sbjct: 158 LMGSGEPLDNFRETIAFLEAVRDPQKLAMSLRHVTLSTSGLVPKIEELAKLGWPLN--LA 215 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA +N +R+ ++P+N+ YPLE L+ AC Y + RR+T+EY+++ +ND A Sbjct: 216 VSLHASNNRVRDKIMPVNKTYPLEPLLSACDTY-SRATGRRVTYEYILIDRLNDKTEHAK 274 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L +LKG +NLIP N S Q + F + +++ G + +R G DI A Sbjct: 275 ELASLLKGRLCHVNLIPLNAVDELGLKPSPQNTVKQFRDTLRQKGVNVTVRRKLGADIAA 334 Query: 361 ACGQLKS 367 ACGQL++ Sbjct: 335 ACGQLRN 341 >gi|194014876|ref|ZP_03053493.1| radical SAM enzyme, Cfr family [Bacillus pumilus ATCC 7061] gi|194013902|gb|EDW23467.1| radical SAM enzyme, Cfr family [Bacillus pumilus ATCC 7061] Length = 360 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 118/340 (34%), Positives = 192/340 (56%), Gaps = 21/340 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R +QI++W+Y + + F MS++S+++R L F+I + V ++ S DGT K+L Sbjct: 37 FRAAQIFEWLYEKRVTSFDEMSNLSKDLREKLKDQFTITTLKTVIKQTSQDGTIKFLFE- 95 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + IETV + + ++CV++QVGC + C+FC + L RNL A EI+ QVL Sbjct: 96 ----LHDGYTIETVLMRHEYGNSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVAQVL 151 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 + L + ++S++V+MG+GEP NF+ + L I + GL+ Sbjct: 152 KVQQALDE--------------TDERVSSVVIMGIGEPFDNFEEMLAFLKIINHDHGLNI 197 Query: 213 SKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 R IT+STSG +P I + E++ + A+SLHA + ++R+ L+PIN+ Y L L++A Sbjct: 198 GARHITVSTSGIIPKIYQFADEQMQINFAVSLHAPNTEIRSRLMPINKAYKLPKLMEAIE 257 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 +Y RR++FEY + G+ND A L +LKGI +NLIP N P +Y+ + + Sbjct: 258 YYIQ-KTGRRVSFEYGLFGGVNDQVHHAEELADLLKGIKCHVNLIPVNYVPERDYVRTPR 316 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 + I F + +K G + IR +G DI AACGQL++ ++ Sbjct: 317 EQIFLFEKTLKERGVNVTIRREQGHDIDAACGQLRAKERQ 356 >gi|195977717|ref|YP_002122961.1| 23S rRNA methyltransferase and florfenicol/chloramphenicol resistance protein [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|254807213|sp|B4U1T1|RLMN_STREM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|195974422|gb|ACG61948.1| 23S rRNA methyltransferase and florfenicol/chloramphenicol resistance protein [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 360 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 130/368 (35%), Positives = 204/368 (55%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ G+ R+EL + I R +QIW W+Y + I+ F M++IS+E +L Sbjct: 2 KPSIYGLTRDEL----IAWAIDNGQKAFRATQIWDWLYRKRIQSFDEMTNISKEFLAILK 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F I + + E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DSFCINPLKQRVAQE--SADGTVKYLFELPDGML-----IETVLMRQHYGQSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L + EI Q+++ ++ D G ++ ++S++V Sbjct: 111 CNIGCTFCASGLIKKQRDLNSGEITAQIMMVQNYF-DQRGQDE-----------RVSHVV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+ NV L +D GL+ R IT+STSG I E + V LA+S Sbjct: 159 VMGIGEPFDNYQNVMTFLRTINDDHGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ INR +PL+ L A +Y +N RR+TFEY+ML +ND A L Sbjct: 219 LHAPNNELRSSIMRINRSFPLDKLFSAIEYYIETTN-RRVTFEYIMLNKVNDGVEQAQEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 + K I + +NLIP+NP +Y S ++ + F + +K++G + +R G DI Sbjct: 278 ADLTKRIRKLSYVNLIPYNPVSEHDQYSRSPKERVAAFYDILKKNGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|325860042|ref|ZP_08173169.1| 23S rRNA m2A2503 methyltransferase [Prevotella denticola CRIS 18C-A] gi|325482568|gb|EGC85574.1| 23S rRNA m2A2503 methyltransferase [Prevotella denticola CRIS 18C-A] Length = 353 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 131/366 (35%), Positives = 195/366 (53%), Gaps = 29/366 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ L+GM EL+E +G+P Q+ KW+Y + ++ M++IS+ R L Sbjct: 5 KKYLLGMTLGELKEVAKSLGMPA----FTGGQMAKWLYTQQVKSIDEMTNISKANREKLA 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++I E D + S DGT K+L FP G +ETVYIPE R TLCVSSQVGC Sbjct: 61 AAYAIGCKEPTDAQYSKDGTVKYL--FPTDS--GKF-VETVYIPEDGRATLCVSSQVGCK 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q +L+A +IL QV +P K++NIV M Sbjct: 116 MNCLFCQTGKQGFEGSLSATDILNQVY------------------SLPERD-KLTNIVFM 156 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 G GEP+ N DNV + I + G +S +RIT+S+ G + R EE +AIS+H+ Sbjct: 157 GQGEPMDNLDNVLRVTEILTAGFGYGWSPKRITVSSVGIKGKLKRFLEESDCHVAISMHS 216 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ R+ L+P R +E ++D +Y S+ RR++FEY++ K +NDS A ++++ Sbjct: 217 PLHEQRSELMPAERGMSIESIVDLLGNYD-FSHQRRLSFEYIVFKDVNDSEAHAKAIVRL 275 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG+ +INLI F+P P D + + F + G + IR RG DI AACG L Sbjct: 276 LKGLDCRINLIRFHPIPNTPLQGVDDQKMEEFRNYLTLHGVFTTIRASRGQDIFAACGLL 335 Query: 366 KSLSKR 371 + ++ Sbjct: 336 STAKEK 341 >gi|257066169|ref|YP_003152425.1| radical SAM enzyme, Cfr family [Anaerococcus prevotii DSM 20548] gi|256798049|gb|ACV28704.1| radical SAM enzyme, Cfr family [Anaerococcus prevotii DSM 20548] Length = 341 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 125/355 (35%), Positives = 194/355 (54%), Gaps = 30/355 (8%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 +ELEE K G + + R Q+++ I+V + DF+ MSD+S+++R L++ + + Sbjct: 11 KELEEIFTKEG----YQKFRAKQVYRQIHVNKVNDFKLMSDLSKDMREKLSEKYDFPKMK 66 Query: 75 IVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133 + E +S D T+K+L I IE V++ R T+C+SSQVGC + C FC + Sbjct: 67 VEKEFVSELDSTKKYLFSLADGNI-----IEAVFMDYDKRKTICISSQVGCRMGCKFCAS 121 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 RNL+A E++ +V L GD I+NIV+MG+GEPL N Sbjct: 122 TKNGRERNLSAGELIEEVYALERLNGD------------------INNIVIMGIGEPLDN 163 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252 ++N++K + I +D G + S R ITLSTSG P I ++ + + V LA+SLH +D R Sbjct: 164 YENIRKFIEIITDEKGRNLSHRSITLSTSGLSPMIRKLADSGLDVNLAVSLHYADDDKRR 223 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312 +PI KY +E L++A +Y + RR++FEYV++ G+N+ D NL +LKG Sbjct: 224 KFMPIANKYSIESLMEATDYYLDRT-KRRVSFEYVVIDGVNNLDSDVSNLTSLLKGKNVH 282 Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 INLIP NP Y + F + + + ++ IR G DI A+CGQL++ Sbjct: 283 INLIPLNPIEEFSYDRPKSTALRDFRDKLLKKKLNATIRKSMGSDIDASCGQLRN 337 >gi|189463574|ref|ZP_03012359.1| hypothetical protein BACCOP_04298 [Bacteroides coprocola DSM 17136] gi|189429677|gb|EDU98661.1| hypothetical protein BACCOP_04298 [Bacteroides coprocola DSM 17136] Length = 349 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 129/366 (35%), Positives = 192/366 (52%), Gaps = 29/366 (7%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+G E++ + +G+P QI W+Y + + M+++S + R L +++ Sbjct: 8 LLGKTLSEIQGIVHGLGMPG----FTAKQIVAWLYDKKVFSIDDMTNLSLKNRERLKENY 63 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 I + E S DGT K+L C IE+VYIP++ R TLCVSSQVGC + C Sbjct: 64 EIGVTAPIHEMRSVDGTVKYLF-----CTPEGDYIESVYIPDEDRATLCVSSQVGCKMNC 118 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG Q +LT +IL Q+ IP K++NIV MGMG Sbjct: 119 KFCMTGKQGYTNSLTPTQILNQIY------------------SIPERD-KLTNIVFMGMG 159 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN 248 EP N D V +SL I + G ++S +RIT+ST G + R EE LA+SLH+ Sbjct: 160 EPFDNLDAVLRSLEILTADYGYAWSPKRITVSTVGLRKGLERFLEESDCHLAVSLHSPFP 219 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 R L+P + + + +ID R Y S RR++FEY++ KG+NDS A LIK+L+G Sbjct: 220 AQRRELMPAEKAFSITEIIDILRRY-DFSKQRRLSFEYIVFKGVNDSMLYAKELIKLLRG 278 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 + +INLI F+ P + +D + ++ F + + + G + IR RG DI AACG L + Sbjct: 279 LDCRINLIRFHAIPNVDLEGTDMESMLAFRDYLTQHGVFATIRASRGEDIFAACGMLSTA 338 Query: 369 SKRIPK 374 ++ K Sbjct: 339 KRQAEK 344 >gi|295094726|emb|CBK83817.1| 23S rRNA m(2)A-2503 methyltransferase [Coprococcus sp. ART55/1] Length = 358 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 127/365 (34%), Positives = 204/365 (55%), Gaps = 30/365 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +++ L M EEL + G P R QI++W +V+ + M+++ + +R Sbjct: 11 IRQPDLKSMNMEELRNWVTGAGQPA----FRAKQIYQWFHVKLADGTEEMTNLPKSLREK 66 Query: 64 LNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 +++ + I +V IS DGT K+L R G V IE+V + K ++C+SSQV Sbjct: 67 MDE-YGIYGVSVVTRLISEDDGTNKFLFRLH----DGNV-IESVLMKYKHGNSVCISSQV 120 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC + LVRNLTA E+L Q+ + + G+ ++SN+ Sbjct: 121 GCRMGCRFCASTIGGLVRNLTASEMLSQIYSIQKITGE-----------------RVSNV 163 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241 V+MG GEPL NFDN+ + + + +D GL+ S+R +T+S+ G VP I R+ + + + A+ Sbjct: 164 VVMGTGEPLDNFDNLVRFIEMLTDENGLNISQRNVTVSSCGLVPEIKRLADMGLSITFAL 223 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA +++ R L+PI +Y + ++DAC +Y + RRITFEY ++KG NDSP A Sbjct: 224 SLHAPNDEDRRALMPIANRYSIAEVLDACDYYFDRT-GRRITFEYSLVKGQNDSPEKACE 282 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++++G +NLIP NP +Y +D I F ++R+ ++ +R G DI AA Sbjct: 283 LARLIRGRNCHVNLIPVNPIKERDYERADNSAIENFKNILERNQITATVRRSMGRDIDAA 342 Query: 362 CGQLK 366 CGQL+ Sbjct: 343 CGQLR 347 >gi|321315341|ref|YP_004207628.1| ribosomal RNA large subunit methyltransferase N [Bacillus subtilis BSn5] gi|320021615|gb|ADV96601.1| ribosomal RNA large subunit methyltransferase N [Bacillus subtilis BSn5] Length = 363 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 116/340 (34%), Positives = 192/340 (56%), Gaps = 21/340 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R +QI++W+Y + + F+ M+++S+++R LN HF + + ++ S DGT K+L Sbjct: 40 FRAAQIFEWLYEKRVSSFEDMTNLSKDLREKLNTHFVLTTLKTAVKQTSQDGTMKFLFE- 98 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + IETV + + ++CV++QVGC + C+FC + L RNL A EI+ QV+ Sbjct: 99 ----LHDGYTIETVLMRHEYGNSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVAQVV 154 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 + L + ++S++V+MG+GEP NF+ + L I + GL+ Sbjct: 155 KVQKALDE--------------TDERVSSVVIMGIGEPFDNFNEMLAFLKIINHDKGLNI 200 Query: 213 SKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 R IT+STSG +P I +++ + AISLHA + ++R+ L+PINR Y L L++A + Sbjct: 201 GARHITVSTSGIIPKIYEFADQQMQINFAISLHAPNTEIRSRLMPINRAYKLPDLMEAVK 260 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 +Y RRI+FEY + G+ND A L +L+G+ +NLIP N P +Y+ + + Sbjct: 261 YYIN-KTGRRISFEYGLFGGVNDQVEHAEELADLLEGVKCHVNLIPVNYVPERDYVRTPR 319 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 I F + +K G + IR +G DI AACGQL++ ++ Sbjct: 320 DQIFAFEKTLKSRGVNVTIRREQGHDIDAACGQLRAKERQ 359 >gi|294101228|ref|YP_003553086.1| radical SAM enzyme, Cfr family [Aminobacterium colombiense DSM 12261] gi|293616208|gb|ADE56362.1| radical SAM enzyme, Cfr family [Aminobacterium colombiense DSM 12261] Length = 347 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 135/360 (37%), Positives = 194/360 (53%), Gaps = 33/360 (9%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 E LE K+G+ R RT QI +WIY + + + M+++ +++R L I+ P Sbjct: 14 EWLEFCTEKLGLQ----RYRTDQICQWIYEKKVFNIYDMTNLGKDLREDLAYKILILPPS 69 Query: 75 IVDEKISCDGTRK--WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132 +V ++ S DGTRK W L+ R IE+V + + T C+SSQVGC L C+FC Sbjct: 70 LVKQETSKDGTRKFLWQLQDGQR-------IESVLLSHGNHNTACISSQVGCPLACAFCA 122 Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192 TG VRNLT EI +G F E + G+ I+NIV MGMGEPL Sbjct: 123 TGKGGFVRNLTPGEI----------VGQFLAME-------KAAGQNITNIVFMGMGEPLL 165 Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLR 251 N + + KS+ I + R +T+ST+G VP I + E EI V L++SLH ++ LR Sbjct: 166 NQEALFKSIKILNHPKMRGLGARHMTISTAGIVPGIRALTELEIPVRLSVSLHGTNDMLR 225 Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311 N L+PIN++YPL LI+A R Y R+T EYVM+ +ND+ A L ++ G+ Sbjct: 226 NKLMPINQQYPLGSLIEALRDYQQ-KTGDRVTIEYVMIDRVNDNTEQAYELAALMNGLSI 284 Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 +NLIP+NP Y S Q+ I F + + IR +G DI AACGQL+ +++ Sbjct: 285 YVNLIPYNPVDAT-YRRSSQERIKAFGKILSELNIEYEIRREKGSDINAACGQLRRQNEK 343 >gi|172037640|ref|YP_001804141.1| ribosomal RNA large subunit methyltransferase N [Cyanothece sp. ATCC 51142] gi|205829743|sp|B1WU13|RLMN_CYAA5 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|171699094|gb|ACB52075.1| CHP48-containing protein [Cyanothece sp. ATCC 51142] Length = 343 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 132/366 (36%), Positives = 198/366 (54%), Gaps = 31/366 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 ++E+L+G +L + + + G P R Q+ +W+Y +G+R +S + R L Sbjct: 4 QEETLLGKSVGQLTDWVKQQGQPA----YRGKQLHQWLYQKGVRSLTEISVFPKAWREEL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + + I IV I+ D TRK+LL +G + IETV IP R T+CVSSQVGC Sbjct: 60 -KDYPIGRSNIVHCTIAPDQTRKYLL-----SLGDGLIIETVGIPTSKRLTVCVSSQVGC 113 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG RNLT EI+ QVL + ED + R++S++V Sbjct: 114 PMNCDFCATGKGGYTRNLTCAEIVDQVLTVQ---------EDFQ--------RRVSHVVF 156 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243 MGMGEPL N V K++ I + +G+ +R +T+ST G I + ++ V A+SL Sbjct: 157 MGMGEPLLNLKEVIKAVKILNQDVGIG--QRSLTISTVGVPKKILELAHHQLQVTFAVSL 214 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA + LR L+P + YPL L+ CR Y ++ RR+TFEY++L G+ND P + L Sbjct: 215 HAANQTLREQLIPSAKSYPLPKLLADCRKYVEIT-GRRVTFEYILLGGVNDLPEQGIQLA 273 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K L G + +NLIP+NP +Y D + I F ++ + +R RGL+ AACG Sbjct: 274 KCLTGFQSHVNLIPYNPIEEADYQRPDGESINRFKSILEEHKIAVSVRYSRGLEANAACG 333 Query: 364 QLKSLS 369 QL+++S Sbjct: 334 QLRAMS 339 >gi|163815234|ref|ZP_02206611.1| hypothetical protein COPEUT_01394 [Coprococcus eutactus ATCC 27759] gi|158449429|gb|EDP26424.1| hypothetical protein COPEUT_01394 [Coprococcus eutactus ATCC 27759] Length = 374 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 129/362 (35%), Positives = 203/362 (56%), Gaps = 32/362 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 L M +EL++ + +G P R QI++W +V+ + M+++ + +R L+++ Sbjct: 30 DLKSMSIDELKDWVQGVGQPA----FRAKQIYQWFHVKLAGSIEEMTNLPKSLRELMDEQ 85 Query: 68 FSIIYPEIVDEKISC--DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 IY V ++ DGT K+L R G V IE+V + K ++C+SSQVGC Sbjct: 86 --KIYGVNVVTRLESKEDGTNKFLFRLH----DGNV-IESVLMRYKHGNSVCISSQVGCR 138 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC + LVRNLTA E+L Q+ + + G+ +ISN+V+M Sbjct: 139 MGCRFCASTIGGLVRNLTASEMLSQIYEIQKISGE-----------------RISNVVVM 181 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244 G GEPL NFDN+ + + + +D GL+ S+R IT+S+ G VP I R+ + ++ + A+SLH Sbjct: 182 GTGEPLDNFDNLVRFIKMLTDENGLNISQRNITVSSCGLVPEIKRLADLDLTITFALSLH 241 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++ R L+PI +Y +E ++DACR+Y + RRITFEY ++KG NDSP A L Sbjct: 242 APNDADRRELMPIANRYSIEEVLDACRYYFDKT-GRRITFEYSLVKGQNDSPEKARELAA 300 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 ++KG+ +NLIP NP + +D I F + ++ + +R G DI AACGQ Sbjct: 301 LIKGMNCHVNLIPVNPIKERSFERADNTSIENFRKVLESRQITVTVRRSMGRDIDAACGQ 360 Query: 365 LK 366 L+ Sbjct: 361 LR 362 >gi|94984740|ref|YP_604104.1| hypothetical protein Dgeo_0633 [Deinococcus geothermalis DSM 11300] gi|123079957|sp|Q1J0P9|RLMN_DEIGD RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|94555021|gb|ABF44935.1| 23S rRNA m(2)A-2503 methyltransferase [Deinococcus geothermalis DSM 11300] Length = 344 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 120/335 (35%), Positives = 176/335 (52%), Gaps = 22/335 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +W++V+G+ F+ M+++ + R L F + ++ S DG+ K+L Sbjct: 17 FRQRQLLEWVFVQGVGTFEAMTNLPAQARADLASRFRLNPFREIETVRSADGSVKYLF-- 74 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + ++E VY+P R T+CVS+ VGC C+FC TG RNLT EI+ QVL Sbjct: 75 ---TLQDGRQMEAVYMPYLDRKTICVSTMVGCPAKCAFCATGAMGFGRNLTPGEIVGQVL 131 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 G P R++ N+V MGMGEPL N++N ++ I L Sbjct: 132 AVAGGEGLAP--------------RELRNLVFMGMGEPLLNYENTMQAARILLHPQALGM 177 Query: 213 SKRRITLSTSGFVPNIARVGEE--IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 SKRR+TLST G I R+ E +G+ LAISLHA R ++P + + ++ A Sbjct: 178 SKRRVTLSTVGLPKGIRRLAAEDDLGIKLAISLHAPDEATRQRIIPTGHRNSIAEIMAAA 237 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 R Y ++ RR+TFEY ML+GIND A L +L+G+ + +NLIP NPW G + S Sbjct: 238 REYQAVTG-RRVTFEYSMLRGINDHLWQAEELADLLRGLVSHVNLIPMNPWDGSGFESST 296 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 ++ I F + + G +R RG D AACGQL Sbjct: 297 EEQIQAFYDVLAARGVDVSVRRSRGKDAGAACGQL 331 >gi|225868978|ref|YP_002744926.1| radical SAM superfamily protein [Streptococcus equi subsp. zooepidemicus] gi|259491996|sp|C0MD67|RLMN_STRS7 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|225702254|emb|CAX00012.1| radical SAM superfamily protein [Streptococcus equi subsp. zooepidemicus] Length = 360 Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 129/368 (35%), Positives = 204/368 (55%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ G+ R+EL + I R +QIW W+Y + ++ F M++IS+E +L Sbjct: 2 KPSIYGLTRDEL----IAWAIDNGQKAFRATQIWDWLYRKRVQSFDEMTNISKEFLAILK 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F I + + E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DSFCINPLKQRVAQE--SADGTVKYLFELPDGML-----IETVLMRQHYGQSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L + EI Q+++ ++ D G ++ ++S++V Sbjct: 111 CNIGCTFCASGLIKKQRDLNSGEITAQIMMVQNYF-DQRGQDE-----------RVSHVV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+ NV L +D GL+ R IT+STSG I E + V LA+S Sbjct: 159 VMGIGEPFDNYQNVMTFLRTINDDHGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ INR +PL+ L A +Y +N RR+TFEY+ML +ND A L Sbjct: 219 LHAPNNELRSSIMRINRSFPLDKLFSAIEYYIETTN-RRVTFEYIMLNKVNDGVEQAQEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 + K I + +NLIP+NP +Y S ++ + F + +K++G + +R G DI Sbjct: 278 ADLTKRIRKLSYVNLIPYNPVSEHDQYSRSPKERVAAFYDILKKNGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|296331150|ref|ZP_06873624.1| ribosomal RNA large subunit methyltransferase N [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674306|ref|YP_003865978.1| putative Fe-S-cluster AdoMet radical enzyme [Bacillus subtilis subsp. spizizenii str. W23] gi|296151794|gb|EFG92669.1| ribosomal RNA large subunit methyltransferase N [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412550|gb|ADM37669.1| putative Fe-S-cluster AdoMet radical enzyme [Bacillus subtilis subsp. spizizenii str. W23] Length = 363 Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 117/340 (34%), Positives = 192/340 (56%), Gaps = 21/340 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R +QI++W+Y + + F+ M+++S+++R L+ HF + + ++ S DGT K+L Sbjct: 40 FRAAQIFEWLYEKRVSSFEEMTNLSKDLREKLSAHFEMTTLKTAVKQTSQDGTMKFLFE- 98 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + IETV + + ++CV++QVGC + C+FC + L RNL A EI+ QVL Sbjct: 99 ----LHDGYTIETVLMRHEYGNSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVAQVL 154 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 + L + ++S++V+MG+GEP NF+ + L I + GL+ Sbjct: 155 KVQKALDE--------------TDERVSSVVIMGIGEPFDNFNEMLAFLKIINHDKGLNI 200 Query: 213 SKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 R IT+STSG +P I +++ + AISLHA + ++R+ L+PINR Y L L++A + Sbjct: 201 GARHITVSTSGIIPKIYEFADQQMQINFAISLHAPNTEIRSRLMPINRAYKLPDLMEAVK 260 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 +Y RRI+FEY + G+ND A L +L+GI +NLIP N P +Y+ + + Sbjct: 261 YYIN-KTGRRISFEYGLFGGVNDQVEHAEELADLLEGIKCHVNLIPVNYVPERDYVRTPR 319 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 I F + +K G + IR +G DI AACGQL++ ++ Sbjct: 320 DQIFAFEKTLKSRGVNVTIRREQGHDIDAACGQLRAKERQ 359 >gi|15646037|ref|NP_208219.1| ribosomal RNA large subunit methyltransferase N [Helicobacter pylori 26695] gi|3287947|sp|O25970|RLMN_HELPY RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|2314600|gb|AAD08467.1| conserved hypothetical protein [Helicobacter pylori 26695] Length = 357 Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 132/354 (37%), Positives = 199/354 (56%), Gaps = 31/354 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R Q++ W+Y + F+ M ++ S++ L + F++ EI + S DG++K+L + Sbjct: 21 FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREFALRTIEITHVRESVDGSKKYLFK 80 Query: 92 -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141 F A + ++ ET I E+ + T+CVS Q+GC + CSFC+T VRN Sbjct: 81 SLRDNHTFEAVLLKMKDKKIDAETNAILEREKYTVCVSCQIGCQVGCSFCFTQKGGFVRN 140 Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 L A EI+ Q LL + E +P K NIV MGMGEPL N D V K++ Sbjct: 141 LKASEIIQQALLIK------------EDNNLPL--EKALNIVFMGMGEPLNNLDEVCKAI 186 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260 I + G+ S +RIT+STSG I G+ +GV LAISLHAV + R+ L+P+N+K Sbjct: 187 EIFN--TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244 Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 Y +E +++ R +P L +R+ FEY+++K +NDS A L+K+L GI +K+NLI FNP Sbjct: 245 YNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303 Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372 G ++ ++ F++ + G IR + LDI AACGQL K LS++I Sbjct: 304 HEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQI 357 >gi|288927891|ref|ZP_06421738.1| radical SAM enzyme, Cfr family [Prevotella sp. oral taxon 317 str. F0108] gi|288330725|gb|EFC69309.1| radical SAM enzyme, Cfr family [Prevotella sp. oral taxon 317 str. F0108] Length = 351 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 125/362 (34%), Positives = 195/362 (53%), Gaps = 29/362 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+G +EL+ + G+P Q+ W+Y + + + M++IS+ R L Q + Sbjct: 8 LLGHTLDELKAIAIDNGLPA----FAGKQMAVWLYDKHVDTIEEMTNISKSNREKLAQRY 63 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 I + +D + S DGT K+L FP G +ETVYIP++ R TLCVS QVGC + C Sbjct: 64 EIGAAKFIDAQYSKDGTIKYL--FPTE--SGKF-VETVYIPDRDRATLCVSCQVGCKMNC 118 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG Q NLTA++IL Q+ +P +K++NIV MG G Sbjct: 119 LFCQTGKQGFEGNLTAKDILNQIY------------------ALPER-QKLTNIVFMGQG 159 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN 248 EP+ N DNV K I + G ++S +RIT+S+ G + R +E +AIS+H Sbjct: 160 EPMDNLDNVLKVTQILTADYGYAWSPKRITVSSVGVKGKLKRFLDESDCHVAISMHTPIP 219 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 + R ++P + +E +++ + Y ++ RR++FEY+M G+ND+P A L+K+++G Sbjct: 220 EQRASIMPAEKGLSIEEIVELLKQYD-FTHQRRLSFEYIMFGGLNDTPLHARQLVKLVEG 278 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 + ++NLI F+ P SD+K + TF + + G + IR RG DI AACG L + Sbjct: 279 LDCRVNLIRFHQIPNVNLNNSDEKRMETFRDYLTNHGVFTTIRASRGQDIFAACGLLSTA 338 Query: 369 SK 370 K Sbjct: 339 KK 340 >gi|291484127|dbj|BAI85202.1| hypothetical protein BSNT_02588 [Bacillus subtilis subsp. natto BEST195] Length = 363 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 116/340 (34%), Positives = 192/340 (56%), Gaps = 21/340 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R +QI++W+Y + + F+ M+++S+++R LN HF + + ++ S DGT K+L Sbjct: 40 FRAAQIFEWLYEKRVSSFEEMTNLSKDLREKLNTHFVLTTLKTAVKQTSQDGTMKFLFE- 98 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + IETV + + ++CV++QVGC + C+FC + L RNL A EI+ QV+ Sbjct: 99 ----LHDGYTIETVLMRHEYGNSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVAQVV 154 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 + L + ++S++V+MG+GEP NF+ + L I + GL+ Sbjct: 155 KVQKALDE--------------TDERVSSVVIMGIGEPFDNFNEMLAFLKIINHDKGLNI 200 Query: 213 SKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 R IT+STSG +P I +++ + AISLHA + ++R+ L+PINR Y L L++A + Sbjct: 201 GARHITVSTSGIIPKIYEFADQQMQINFAISLHAPNTEIRSRLMPINRAYKLPDLMEAVK 260 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 +Y RRI+FEY + G+ND A L +L+G+ +NLIP N P +Y+ + + Sbjct: 261 YYIN-KTGRRISFEYGLFGGVNDQVEHAEELADLLEGVKCHVNLIPVNYVPERDYVRTPR 319 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 I F + +K G + IR +G DI AACGQL++ ++ Sbjct: 320 DQIFAFEKTLKSRGVNVTIRREQGHDIDAACGQLRAKERQ 359 >gi|225870018|ref|YP_002745965.1| radical SAM superfamily protein [Streptococcus equi subsp. equi 4047] gi|254807212|sp|C0MBZ4|RLMN_STRE4 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|225699422|emb|CAW92902.1| radical SAM superfamily protein [Streptococcus equi subsp. equi 4047] Length = 360 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 128/368 (34%), Positives = 201/368 (54%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ G+ R+EL + I R +QIW W+Y + ++ F M++IS+E +L Sbjct: 2 KPSIYGLTRDEL----IAWAIDNGQKAFRATQIWDWLYRKRVQSFDEMTNISKEFVAILK 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F I + + E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DSFCINPLKQRVAQE--SADGTVKYLFELPDGML-----IETVLMRQHYGQSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L + EI Q+++ ++ E ++S++V Sbjct: 111 CNIGCTFCASGLIKKQRDLNSGEITAQIMMVQNYFDKRAQDE------------RVSHVV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+ NV L +D GL+ R IT+STSG I E + V LA+S Sbjct: 159 VMGIGEPFDNYQNVMTFLRTINDDHGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ INR +PL+ L A +Y +N RR+TFEY+ML +ND A L Sbjct: 219 LHAPNNELRSSIMRINRSFPLDKLFSAIEYYIETTN-RRVTFEYIMLNKVNDGVEQAQEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 + K I + +NLIP+NP +Y S ++ + F + +K++G + +R G DI Sbjct: 278 ADLTKRIRKLSYVNLIPYNPVSEHDQYSRSPKERVAAFYDILKKNGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|134299564|ref|YP_001113060.1| radical SAM protein [Desulfotomaculum reducens MI-1] gi|205829746|sp|A4J582|RLMN_DESRM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|134052264|gb|ABO50235.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfotomaculum reducens MI-1] Length = 350 Score = 213 bits (543), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 125/336 (37%), Positives = 187/336 (55%), Gaps = 25/336 (7%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDG-TRKWLLR 91 R QI +W++ +G+ F M+++S+ +R LN+ ++ I+ ++S G T K+L Sbjct: 31 FRADQICRWVFAQGVSSFDEMTNLSKGLRAKLNELTTLSQATILTSQVSAKGDTIKFLFG 90 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 P +E+V + ++CVS+QVGC + C FC + LVRNL+ EI QV Sbjct: 91 LP-----DGHAVESVLMKHTYGNSVCVSTQVGCRMGCLFCASTINGLVRNLSPGEIYDQV 145 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 L + G ++S+IV+MG GEPL NFDNV K L GL+ Sbjct: 146 L-----------------GIQRETGERVSHIVIMGAGEPLDNFDNVLKFLENIHAEYGLN 188 Query: 212 FSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 R ITLST G VP + + ++ + LA+SLHA ++DLR+ LVPINR+Y + LI+AC Sbjct: 189 IGYRHITLSTCGLVPRMQELALRKLPITLAVSLHAPNDDLRDKLVPINRRYKIHQLIEAC 248 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 +Y ++ RRITFEY +L GINDS L +LK + INLIP NP E++ + Sbjct: 249 SNYIEIT-GRRITFEYALLSGINDSDEHVRQLAALLKNLLCHINLIPVNPVEEKEFIRTP 307 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + + F + +++ G + +R G DI AACGQL+ Sbjct: 308 PEKVERFRQYLEKVGLNVTVRRELGGDIDAACGQLR 343 >gi|168486739|ref|ZP_02711247.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae CDC1087-00] gi|168490855|ref|ZP_02714998.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae CDC0288-04] gi|183570290|gb|EDT90818.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae CDC1087-00] gi|183574611|gb|EDT95139.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae CDC0288-04] Length = 361 Score = 213 bits (543), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 126/368 (34%), Positives = 209/368 (56%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+ ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLTRQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + IV E S DGT K+L P + IETV + + ++CV++QV Sbjct: 58 DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVD 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI+ Q++L + + E ++S+IV Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFAERGQDE------------RVSHIV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N++NV + +D G++ R IT+STS I +E + V LA+S Sbjct: 159 VMGIGEPFDNYNNVLNFVCTINDDKGMAIGARHITVSTSVLAHKIRNFADEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ INR +P+E L A +Y +N RR+TFEY+ML +ND AL Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEF 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++LK I + +NLIP+NP +Y S ++ ++ F + +K+ G + +R G DI Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEYGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|330894491|gb|EGH27152.1| radical SAM protein [Pseudomonas syringae pv. mori str. 301020] Length = 249 Score = 213 bits (543), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 111/225 (49%), Positives = 143/225 (63%), Gaps = 11/225 (4%) Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 LTA E++ QV +A G P +V R I+N+VMMGMGEPL NFDNV ++ Sbjct: 1 LTAAEVIGQVWIANKSFGSVPA----------TVDRAITNVVMMGMGEPLLNFDNVIAAM 50 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKY 261 + D +G SKRR+TLSTSG VP I + + I V LA+SLHA ++ LRN LVPIN+KY Sbjct: 51 HLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKKY 110 Query: 262 PLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 PL+ML+D+CR Y L R +T EY MLK IND A+ +I++LK P KINLIPFNP Sbjct: 111 PLQMLLDSCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKDTPCKINLIPFNP 170 Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +P Y I F + + ++GY+ +RT RG DI AACGQL Sbjct: 171 FPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQL 215 >gi|148243053|ref|YP_001228210.1| Fe-S-cluster redox protein [Synechococcus sp. RCC307] gi|205829914|sp|A5GVE8|RLMN_SYNR3 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|147851363|emb|CAK28857.1| Predicted Fe-S-cluster redox enzyme [Synechococcus sp. RCC307] Length = 346 Score = 213 bits (543), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 128/367 (34%), Positives = 199/367 (54%), Gaps = 38/367 (10%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++L+G+ + +LE G+P R Q+ W+Y +G R + ++ + +R + Sbjct: 4 KALLGLSQAQLETWAKDQGLPP----FRGRQLHDWLYAKGARHWHDITVLPAALRQ--QE 57 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + ++ ++ DGT K LL + +ETV IP + R T+CVSSQVGC + Sbjct: 58 PLPLGRSNELERHLAQDGTLKLLL-----ATDDGLSLETVGIPTRDRLTVCVSSQVGCPM 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG + L R+L EI+ QVL R ++ R+ S++V MG Sbjct: 113 ACRFCATGKEGLQRSLEPHEIVDQVLTVREVMQ-----------------RRPSHVVFMG 155 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF---VPNIARVG-EEIG---VML 239 MGEPL N D+V ++ S +G++ R+IT+ST G +P +A + E +G L Sbjct: 156 MGEPLLNSDHVLTAIDCLSRDLGMAM--RQITVSTVGVPNTLPRLAELALERLGRAQFTL 213 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA LR L+P R YP E L++ CRHY +S RR++FEY++L +NDSPR A Sbjct: 214 AVSLHAPDQALREELIPTARAYPYEQLLEDCRHYVAISG-RRVSFEYILLGNLNDSPRQA 272 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L + ++G + +NLIP+NP E+ + + F+ +K+ G + +R RGLD Sbjct: 273 QALAEQVRGFQSHVNLIPYNPIAEEEFQRPEPARVDAFAAALKQRGVAVSVRASRGLDQN 332 Query: 360 AACGQLK 366 AACGQL+ Sbjct: 333 AACGQLR 339 >gi|254976171|ref|ZP_05272643.1| radical SAM protein [Clostridium difficile QCD-66c26] gi|255093561|ref|ZP_05323039.1| radical SAM protein [Clostridium difficile CIP 107932] gi|255315304|ref|ZP_05356887.1| radical SAM protein [Clostridium difficile QCD-76w55] gi|255517972|ref|ZP_05385648.1| radical SAM protein [Clostridium difficile QCD-97b34] gi|255651088|ref|ZP_05397990.1| radical SAM protein [Clostridium difficile QCD-37x79] gi|260684153|ref|YP_003215438.1| radical SAM protein [Clostridium difficile CD196] gi|260687812|ref|YP_003218946.1| radical SAM protein [Clostridium difficile R20291] gi|260210316|emb|CBA64637.1| radical SAM protein [Clostridium difficile CD196] gi|260213829|emb|CBE05812.1| radical SAM protein [Clostridium difficile R20291] Length = 343 Score = 213 bits (543), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 133/366 (36%), Positives = 205/366 (56%), Gaps = 34/366 (9%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK L +EL+E + I R SQI+ WIY +G + F M++I + +R+ L Sbjct: 4 KKIVLKNFTEDELKEFMKTID----EKPFRGSQIFSWIY-KGAKTFDDMNNIPKSLRNKL 58 Query: 65 NQHFSIIYPEI---VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 + I +I ++ K+ D T+K+L I IETV + SR T+CVS+Q Sbjct: 59 EEVSCIGNIDIELKLESKV--DNTKKYLFLLDDGNI-----IETVMMDYDSRVTVCVSNQ 111 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC + C+FC + L+RNL EIL QV+ + G+++SN Sbjct: 112 VGCRMGCNFCASTMDGLIRNLEPWEILDQVI-----------------KIQEDTGKRVSN 154 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLA 240 +V+MG GEPL NF+N K+ L I ++ GL+ R ITLST G VP + + + EI + LA Sbjct: 155 LVLMGSGEPLDNFENTKQFLKIINEKNGLNIGYRHITLSTCGIVPKMYELADLEIAINLA 214 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLH+ ++ R ++P+ Y +E +++ACR+Y +N RR+TFEY ++KG+NDS ++A Sbjct: 215 LSLHSPYDEERRKIMPVANAYSIEEILNACRYYIKKTN-RRVTFEYSLIKGVNDSEKEAK 273 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L K+LKG+ +NLIP N EY D+ I F + ++++ + +R G DI Sbjct: 274 ALAKLLKGMLCHVNLIPINKVEEREYEKPDKAFIYKFRDSLEKNNIPATVRMSMGSDISG 333 Query: 361 ACGQLK 366 ACGQL+ Sbjct: 334 ACGQLR 339 >gi|91215990|ref|ZP_01252959.1| radical SAM enzyme, Cfr family protein [Psychroflexus torquis ATCC 700755] gi|91185967|gb|EAS72341.1| radical SAM enzyme, Cfr family protein [Psychroflexus torquis ATCC 700755] Length = 348 Score = 213 bits (543), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 127/362 (35%), Positives = 200/362 (55%), Gaps = 26/362 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ + + ++EL E + Q R SQ++ W++ + +F+ M+++S+E R +L Sbjct: 5 KKDIRALSKQELNEFF----VSQGDKSFRGSQVYNWLWNKATYNFEDMTNLSKETRQMLE 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +F I + E+ + + S DGT K ++ + +E+V IP SR T CVSSQVGCS Sbjct: 61 DNFVINHIEVDEMQRSKDGTIKNAVK-----LHDGFTVESVLIPTLSRTTACVSSQVGCS 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T K +RNL A+EI QV+ + G IP +SNIV M Sbjct: 116 LDCKFCATAKLKRMRNLNADEIFDQVVAIDKESRLYNG--------IP-----LSNIVFM 162 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAISL 243 GMGEPL N+ NV KS+ + GL S +RITLSTSG VP + + +++ LA+SL Sbjct: 163 GMGEPLMNYKNVLKSVEKITSPDGLGMSPKRITLSTSG-VPKMIKKLADDDVKFHLAVSL 221 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ +++R ++P N K+PL L D+ ++ + + +T+EY++ KGIND+ D L+ Sbjct: 222 HSAIDEIRTQIMPFNAKFPLADLKDSLLYWYEKT-GKSVTYEYIVWKGINDTQEDISALV 280 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K + IP K+N+I +NP ++ + ++ + + +R RG DI AACG Sbjct: 281 KFCQLIPCKVNIIEYNPIDDGQFQQGSDDAVAKHVNALEANHITVTLRHSRGKDIDAACG 340 Query: 364 QL 365 QL Sbjct: 341 QL 342 >gi|126659786|ref|ZP_01730913.1| hypothetical protein CY0110_11217 [Cyanothece sp. CCY0110] gi|126618938|gb|EAZ89680.1| hypothetical protein CY0110_11217 [Cyanothece sp. CCY0110] Length = 342 Score = 213 bits (543), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 131/368 (35%), Positives = 200/368 (54%), Gaps = 31/368 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +++E L+G E+L + + + G P R Q+ +W+Y +G R +S + R Sbjct: 5 VQEEILLGKSVEQLTDWVKQQGQPA----YRGKQLHQWLYQKGARSLTDISVFPKTWREE 60 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L + + I I I+ D TRK+LL +G + IETV IP R T+CVSSQVG Sbjct: 61 L-KDYQIGRSNIYHRTIADDQTRKYLL-----SLGDELIIETVGIPTSKRLTVCVSSQVG 114 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG R+LT EI+ QVL + ED + +++S++V Sbjct: 115 CPMNCDFCATGKGGYTRDLTCAEIVDQVLTVQ---------EDFQ--------QRVSHVV 157 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242 MGMGEPL N V K++ I + +G+ +R +T+ST G I + ++ V A+S Sbjct: 158 FMGMGEPLLNLKEVIKAVKILNQDVGIG--QRSLTISTVGIPKKILELAHRKLQVTFAVS 215 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA + LR L+P + YPL L+ CR Y ++ RR++FEY++L G+NDS A+ L Sbjct: 216 LHAPNQTLREQLIPSAKYYPLPKLLADCRKYVEIT-GRRVSFEYILLGGVNDSSEQAIQL 274 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K LKG + +NLIP+NP +Y D + I F ++ + +R RGL+ AAC Sbjct: 275 AKCLKGFQSHVNLIPYNPIEEADYQRPDTQSINLFRNVLEEQKIAVSVRYSRGLEANAAC 334 Query: 363 GQLKSLSK 370 GQL+++S+ Sbjct: 335 GQLRAMSQ 342 >gi|198275963|ref|ZP_03208494.1| hypothetical protein BACPLE_02146 [Bacteroides plebeius DSM 17135] gi|198271592|gb|EDY95862.1| hypothetical protein BACPLE_02146 [Bacteroides plebeius DSM 17135] Length = 351 Score = 213 bits (543), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 125/373 (33%), Positives = 195/373 (52%), Gaps = 29/373 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K L+G EL+ + +G+P + QI W+Y + + + M+++S + R L Sbjct: 4 KTPLLGKTLNELKTIVQDLGMP----KFTAGQIASWLYDKKVGSIEEMTNLSLKNRERLM 59 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +++ + V E S DGT K+L C IE+VYIP+ R TLCVSSQVGC Sbjct: 60 ENYEVGASAPVHEVRSVDGTVKYLF-----CTPEGDYIESVYIPDDDRATLCVSSQVGCK 114 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q +LTA +IL Q+ +P ++N+V M Sbjct: 115 MNCKFCMTGKQGYTTSLTAAQILNQIY------------------SVPERD-TLTNVVFM 155 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEP N D V ++L I + G +S +RIT+ST G + R EE LAISLH+ Sbjct: 156 GMGEPFDNLDEVLRALEILTADYGYKWSPKRITVSTVGLRKGLERFLEESDCHLAISLHS 215 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 R L+P + + + +++ R Y S RR++FEY++ KG+NDS A L+K+ Sbjct: 216 PFPSQRRELMPAEKAFSITEMVEILRRY-DFSKQRRLSFEYIVFKGVNDSLIYAKELVKL 274 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G+ ++NLI F+ P + +D + ++ F + + + G + IR RG DI AACG L Sbjct: 275 LRGLDCRMNLIRFHAIPNVDLEGTDMESMIAFRDYLTQHGLFATIRASRGEDIFAACGML 334 Query: 366 KSLSKRIPKVPRQ 378 + ++ K ++ Sbjct: 335 STAQQQAEKKEKE 347 >gi|325282884|ref|YP_004255425.1| Ribosomal RNA large subunit methyltransferase N [Deinococcus proteolyticus MRP] gi|324314693|gb|ADY25808.1| Ribosomal RNA large subunit methyltransferase N [Deinococcus proteolyticus MRP] Length = 350 Score = 213 bits (543), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 123/335 (36%), Positives = 177/335 (52%), Gaps = 22/335 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +W+Y G+ ++ M + E+R L + + + ++ S DG+ K+L Sbjct: 22 FRRRQLLEWVYQHGVGSYEQMHTLPAELRAELAAGWRLNPFDDIETFRSDDGSVKYLFTL 81 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 P ++E VY+P R T+CVS+ VGC C+FC TG RNLT EI+ Q+L Sbjct: 82 P-----DGRQMEAVYMPYLDRKTICVSTMVGCPARCAFCATGAMGFGRNLTPGEIVGQIL 136 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 G E IE R+I N+V MGMGE + N+DN ++ I L Sbjct: 137 A-------VAGGEGIEP-------REIRNLVFMGMGEAMLNYDNTMQAARILLHPQALGM 182 Query: 213 SKRRITLSTSGFVPNIARVGEE--IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 SKRR+TLST G I R+ EE +G+ LAISLHA + R ++P ++ ++ A Sbjct: 183 SKRRVTLSTVGIAKGIRRLAEEDDLGIKLAISLHAPDEETRQQIIPTGGANSIDEIMQAA 242 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 R Y RRIT EY ML+GIND A L + L+G+ + +NLIP NPWPG ++ S Sbjct: 243 RDYQA-KTGRRITMEYTMLRGINDHLWQAELLAERLEGLVSHVNLIPMNPWPGSNFVSST 301 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 ++ I F + ++ G +R RG D AACGQL Sbjct: 302 EEQIQAFYDLLEERGVDVSVRRSRGKDAGAACGQL 336 >gi|86134466|ref|ZP_01053048.1| radical SAM superfamily protein [Polaribacter sp. MED152] gi|85821329|gb|EAQ42476.1| radical SAM superfamily protein [Polaribacter sp. MED152] Length = 345 Score = 213 bits (543), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 122/363 (33%), Positives = 201/363 (55%), Gaps = 24/363 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +KK+ + + +E+L + ++ G R +Q+++W++ + + F+ M++IS++ R + Sbjct: 2 IKKKDIRALTKEQLRDFFVENGDKA----FRGNQVYEWLWSKSLHTFEDMTNISKKTREM 57 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +HF I + ++ + S DGT K ++ + +E+V IP R T CVSSQVG Sbjct: 58 LEEHFVINHIKVDSMQKSADGTIKNGIKLHDGLV-----VESVLIPTPKRTTACVSSQVG 112 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 CSL C FC T K +RNL +EI QV++ I+ K++NIV Sbjct: 113 CSLDCKFCATARLKRMRNLNPDEIYDQVVV-------------IDKQSRLYHNHKLTNIV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242 MGMGEPL N+ NV KS+ + + GL S +RIT+STSG I ++ EE+ LA+S Sbjct: 160 FMGMGEPLMNYKNVLKSIEMITSPEGLGMSSKRITVSTSGVPKMIKKMADEEVKFNLAVS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LH+ +++R ++P N +PL+ L ++ ++ R IT+EYV+ +GIND D L Sbjct: 220 LHSAIDEVRTSIMPFNTTFPLKDLKESLEYWYE-KTKRAITYEYVVWEGINDKKEDIAAL 278 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++ K +P K+NLI +NP ++ + + + ++ + +R RG DI AAC Sbjct: 279 VQFCKYVPCKVNLIEYNPIDDGQFQQASNAALNNYISNLEMHDITVNVRRSRGKDIDAAC 338 Query: 363 GQL 365 GQL Sbjct: 339 GQL 341 >gi|224418821|ref|ZP_03656827.1| hypothetical protein HcanM9_06035 [Helicobacter canadensis MIT 98-5491] gi|313142339|ref|ZP_07804532.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313131370|gb|EFR48987.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] Length = 292 Score = 213 bits (543), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 127/305 (41%), Positives = 177/305 (58%), Gaps = 22/305 (7%) Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-SRGTLCVSSQV 122 L ++F EI ++ S DG+ K+L + + E V++ K + TLC+SSQV Sbjct: 1 LKENFISNAVEIAKKEQSSDGSVKYLFK-----TADNLTYEAVFLKMKEDKFTLCLSSQV 55 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + CSFC T VRNL A E++ QV + + IPS K NI Sbjct: 56 GCKVGCSFCLTAKGGFVRNLNAGEMVYQVFAIK------------KDQNIPS--NKAVNI 101 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241 V MGMGEPL N +NV K + I S+ GLS S+RR T+STSG P I ++G ++GV LAI Sbjct: 102 VYMGMGEPLDNLENVTKCIQILSELDGLSISRRRQTISTSGIAPKIKKLGALDLGVQLAI 161 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHAV ++LR L+PIN+ Y ++ +ID +P + + +R+ FEY+M+ GINDS A Sbjct: 162 SLHAVDDELRTKLMPINKAYNIQNIIDEVVAFP-IDSRKRVMFEYLMIDGINDSLECAKK 220 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L+ +L I AK+NLI FNP G Y ++ + F E + + G IR +GLDI AA Sbjct: 221 LVALLNKIKAKVNLIYFNPHEGSLYKRPSKEKVEAFREYLLKKGLLCTIRESKGLDISAA 280 Query: 362 CGQLK 366 CGQL+ Sbjct: 281 CGQLR 285 >gi|315651136|ref|ZP_07904168.1| cfr family radical SAM enzyme [Eubacterium saburreum DSM 3986] gi|315486601|gb|EFU76951.1| cfr family radical SAM enzyme [Eubacterium saburreum DSM 3986] Length = 352 Score = 213 bits (542), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 124/354 (35%), Positives = 201/354 (56%), Gaps = 29/354 (8%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 EEL+ + IG P R Q+++W++ I F +++S+ R +L + + Sbjct: 11 EELKTFVKDIGEPA----FRAKQLFEWMHKLLIESFDECTNLSKAFREILKSQVILTRLK 66 Query: 75 IVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133 +V+ S D TRK+L I IE+V + + ++C+SSQVGC + C FC + Sbjct: 67 MVEVFTSKIDDTRKYLFALSDGNI-----IESVRMKYEHGNSVCISSQVGCRMGCKFCAS 121 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 LVRNLT E+L QV + +LG+ ++SNIV+MG GEPL N Sbjct: 122 TLDGLVRNLTTAEMLDQVYSIQRILGE-----------------RVSNIVVMGSGEPLDN 164 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252 +DN+ K + I S MGL+ S+R IT+ST G VP I ++ +E + + LA+SLHA ++++R Sbjct: 165 YDNIVKFVRIISSDMGLNISQRNITVSTCGIVPKIKKLADEGLNITLALSLHAPNDEIRK 224 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312 ++P+ KY L+ +I AC +Y RR+++EY ++ G+ND+ +A +L++++ G Sbjct: 225 TIMPVANKYALKDIIAACDYYFK-KTGRRVSYEYSLVAGVNDNMEEAKSLVRLVNGRNIH 283 Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 INLIP NP ++ SD+ I F + +++ G ++ IR G DI ACGQL+ Sbjct: 284 INLIPVNPIKERDFKQSDKLKIKAFRDFLEKKGVNATIRREMGRDIDGACGQLR 337 >gi|332291134|ref|YP_004429743.1| radical SAM enzyme, Cfr family [Krokinobacter diaphorus 4H-3-7-5] gi|332169220|gb|AEE18475.1| radical SAM enzyme, Cfr family [Krokinobacter diaphorus 4H-3-7-5] Length = 346 Score = 213 bits (542), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 127/360 (35%), Positives = 206/360 (57%), Gaps = 28/360 (7%) Query: 13 MREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIY 72 +R+ +E L + Q R +Q+++W++ +G DF M+++S++ R LL+++F I + Sbjct: 8 IRKLSKEELRDFFVSQGDKPFRGNQVYEWLWQKGAHDFIDMTNLSKDTRILLDENFVINH 67 Query: 73 PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132 + + S DGT K + + + +E+V IP K+R T CVSSQVGCSL C FC Sbjct: 68 IRVDQMQRSSDGTIKNGVE-----LHDGLMVESVLIPTKNRTTACVSSQVGCSLNCKFCA 122 Query: 133 TGTQKLVRNLTAEEILLQVLL---ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 T K +RNL +EI+ QV++ L D P +SNIV MGMGE Sbjct: 123 TARLKRMRNLNPDEIVDQVVVIDRQSRLYHDKP----------------LSNIVFMGMGE 166 Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAISLHAVS 247 PL N++NV K++ +D GL S +RIT+STSG VP I + +++ LA+SLH+ Sbjct: 167 PLMNYNNVIKAIDKITDPEGLGMSPKRITVSTSG-VPKIIKKMADDDVKFNLAVSLHSAL 225 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 +++R ++P N + PL L +A ++ + +RIT+EYV+ GIND D + L+ K Sbjct: 226 DNVRTEIMPFNEQMPLADLKEALIYWYEKT-GKRITYEYVVWDGINDRHIDIMALLDFCK 284 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 +P+K+N+I +NP ++ ++ + I + ++ +G + +R RG DI AACGQL + Sbjct: 285 AVPSKVNIIEYNPIDDGQFQQANPEAIDRYVSVLEANGVTVTVRRSRGKDIDAACGQLAN 344 >gi|88803607|ref|ZP_01119132.1| radical SAM enzyme, Cfr family protein [Polaribacter irgensii 23-P] gi|88780619|gb|EAR11799.1| radical SAM enzyme, Cfr family protein [Polaribacter irgensii 23-P] Length = 345 Score = 213 bits (542), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 127/366 (34%), Positives = 198/366 (54%), Gaps = 24/366 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK+ + + +EEL + R +Q+++W++ + + F M++IS+E R +L Sbjct: 3 KKKDIRALTKEELRFFF----VENNDQAFRGNQVYEWLWSKSLHTFDAMTNISKETREML 58 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +F I + ++ + S DGT K ++ I +E+V IP + R T CVSSQVGC Sbjct: 59 AANFVINHIKVDSMQKSKDGTIKNGIKLHDGLI-----VESVLIPTEKRTTACVSSQVGC 113 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 SL C FC T K +RNL +EI QV++ I+ G K+SNIV Sbjct: 114 SLDCKFCATSRLKRMRNLNPDEIYDQVVV-------------IDKQSQLYFGHKLSNIVF 160 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISL 243 MGMGEPL N+ N+ KS+ + + GL S +RIT+STSG I ++ EE+ LA+SL Sbjct: 161 MGMGEPLMNYKNMMKSIQMITSPEGLGMSSKRITVSTSGVPKMIKKMADEEVKFNLAVSL 220 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ +++R ++P N +PL+ L ++ ++ + R IT+EY++ GIND D L+ Sbjct: 221 HSAIDEVRTSIMPFNATFPLKDLKESLEYWYEKT-GRAITYEYIVWDGINDRKEDIKALV 279 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K IP K+NLI +NP E+ + I + ++ + +R RG DI AACG Sbjct: 280 AFCKAIPCKVNLIEYNPIDDGEFQQASSAAINNYISNLEMHDITVNVRRSRGKDIDAACG 339 Query: 364 QLKSLS 369 QL + S Sbjct: 340 QLANKS 345 >gi|261838701|gb|ACX98467.1| hypothetical protein KHP_1277 [Helicobacter pylori 51] Length = 357 Score = 213 bits (542), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 133/354 (37%), Positives = 197/354 (55%), Gaps = 31/354 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R Q++ W+Y + FQ M ++ S++ L Q F++ EI + S DG++K+L + Sbjct: 21 FRAKQLYLWLYAKYKTSFQEMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKYLFK 80 Query: 92 -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141 F A + ++ ET I E + T+CVS Q+GC + CSFC+T VRN Sbjct: 81 SLRDNHTFEAVFLKMKDKKIDEETNAILESEKYTVCVSCQIGCQVGCSFCFTQKGGFVRN 140 Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 L A EI+ Q LL + E +P K NIV MGMGEPL N D V K++ Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKALNIVFMGMGEPLNNLDEVCKAI 186 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260 I + G+ S +RIT+STSG I G+ +GV LAISLHAV + R+ L+P+N+K Sbjct: 187 EIFN--TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244 Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 Y +E +++ + +P L +R+ FEY+++K +NDS A L+K+L GI +K+NLI FNP Sbjct: 245 YNIECVLNEVKKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303 Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372 G ++ + F++ + G IR + LDI AACGQL K LS++I Sbjct: 304 HEGSKFERPSLESARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQI 357 >gi|212550675|ref|YP_002308992.1| hypothetical protein CFPG_318 [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548913|dbj|BAG83581.1| conserved hypothetical protein [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 322 Score = 213 bits (542), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 123/331 (37%), Positives = 182/331 (54%), Gaps = 25/331 (7%) Query: 37 QIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARC 96 QI W+Y R + + M++IS R LN+H+ I E + ++ S DG K+L R Sbjct: 8 QIANWLYKRRVSSIEEMTNISLLHRKQLNEHYYIGKKEYLYKQKSMDGAIKYLFSINNRH 67 Query: 97 IGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARS 156 IE+VYIPEK+R TLCVSSQ+GC + C FC TG Q LT +I+ Q++ Sbjct: 68 F-----IESVYIPEKARATLCVSSQIGCKMHCLFCTTGRQGFEGQLTTGDIINQII---- 118 Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216 IP ++N+V MGMGEPL N + + KSL I + + G ++S +R Sbjct: 119 --------------SIPESA-SLTNLVFMGMGEPLDNIEVLLKSLEILTANYGFAWSPKR 163 Query: 217 ITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276 IT+ST G +P + R+ EE V LAIS+H+ + R +PI +KYP++ +I + Y Sbjct: 164 ITISTVGIIPELKRLLEETKVRLAISVHSPFHAERMSWIPIEKKYPIKKIIGLIQQY-NF 222 Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVT 336 RR++FEY+ +ND + A L ++LKGIP ++NLI ++P SD K+++ Sbjct: 223 RFQRRVSFEYITFGRLNDDIKHASALFRLLKGIPCRVNLIKYHPQQDTVLPASDLKNMIA 282 Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 F + IR+ RG DI AACG L + Sbjct: 283 FRNYLNSKKIICTIRSSRGEDISAACGMLST 313 >gi|171909569|ref|ZP_02925039.1| YloN [Verrucomicrobium spinosum DSM 4136] Length = 390 Score = 213 bits (542), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 128/369 (34%), Positives = 198/369 (53%), Gaps = 38/369 (10%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 SL+G+ EL L ++G R Q+ +W++ + + F MS++S+ ++ L Sbjct: 25 SLLGLQTAELGAILTELG----EKPYRVKQVQEWVFQKRVESFDAMSNLSKPLQEALATR 80 Query: 68 FSIIYPEIVDEKISCDGTRKWLLR-FPARCIGGPVEIETVYIP-------EKS-RGTLCV 118 ++ + S D TRK+L + + R I ETV IP E+S R TLCV Sbjct: 81 LTLRSMTYARVEGSEDTTRKFLFKLYDGRFI------ETVLIPASPSLYGERSDRRTLCV 134 Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 SSQVGC+ C FC +G RNLTA EI+ Q+L L G + Sbjct: 135 SSQVGCAYDCKFCASGLAGFTRNLTAGEIVEQILQVEKL-----------------AGAR 177 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGV 237 + N+V MGMGEPL N NV +++ + + G++ R +T+STSG P I ++ + + V Sbjct: 178 VDNLVFMGMGEPLANLTNVMRAIEVLNAQWGVNIGARHMTVSTSGLAPQIHKLADFPLQV 237 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 LAISLH SN++RN ++P+NRKYPLE L A ++ +R+TFE++++ G+NDS Sbjct: 238 RLAISLHGASNEVRNQIMPVNRKYPLEELFPALEYWNS-KKKQRLTFEFILIDGVNDSLE 296 Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 A L + + AK+NLIP+N G ++ ++ TF + + + +R +G D Sbjct: 297 QARLLGEHASRLDAKVNLIPYNTVEGLQWKRPSERRQDTFRDIVASHDVMTTLRREKGHD 356 Query: 358 ILAACGQLK 366 I AACGQL+ Sbjct: 357 IAAACGQLR 365 >gi|169832893|ref|YP_001694228.1| ribosomal RNA large subunit methyltransferase N [Streptococcus pneumoniae Hungary19A-6] gi|205829906|sp|B1IAU3|RLMN_STRPI RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|168995395|gb|ACA36007.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae Hungary19A-6] Length = 361 Score = 213 bits (541), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 127/368 (34%), Positives = 210/368 (57%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLTHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI+ Q++L + D G ++ ++S+IV Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVSHIV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N++NV +D G++ R IT+ST G I +E + V LA+S Sbjct: 159 VMGIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTLGLAHKIRDFADEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ INR +P+E L A +Y +N RR+TFEY+ML +ND AL L Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++LK I + +NLI +NP +Y S ++ ++ F + +K+ G + +R G DI Sbjct: 278 AELLKNIKKLSYVNLISYNPVSEHDQYSRSPKERVLAFYDTLKKKGGNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AACGQL+S Sbjct: 338 AACGQLRS 345 >gi|169827065|ref|YP_001697223.1| ribosomal RNA large subunit methyltransferase N [Lysinibacillus sphaericus C3-41] gi|205829785|sp|B1HQE6|RLMN_LYSSC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|168991553|gb|ACA39093.1| UPF0063 protein [Lysinibacillus sphaericus C3-41] Length = 380 Score = 213 bits (541), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 124/363 (34%), Positives = 204/363 (56%), Gaps = 25/363 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 KES+ +LE+ L + G R +QI+ W+Y + ++ F+ MS++S+ +R L Sbjct: 34 KESIYSFQPHQLEDWLKENG----EKPFRAAQIFDWLYNKRVKTFEEMSNLSKGLRDKLA 89 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +F++ + ++ S DGT K+L + + IETV + + ++CV++QVGC Sbjct: 90 ANFALSTLSTIIKQESKDGTIKFLFQ-----LQDGYSIETVLMRHEYGNSVCVTTQVGCR 144 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC + L R+L A EI+ QV+ + L + V ++S+IV+M Sbjct: 145 IGCTFCASTLGGLKRHLLAGEIVEQVVKVQQTLDE--------------VNERVSHIVIM 190 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLH 244 G+GEP N+D + L + + GL+ R IT+STSG VP I + E++ + A+SLH Sbjct: 191 GIGEPFDNYDAMMNFLKVINHEKGLNIGARHITVSTSGIVPKIYQFADEQLQINFAVSLH 250 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A + + R L+PI R Y L+ L++A R+Y RR++FEY ++ G NDS A L Sbjct: 251 APNQEARQKLMPIARAYKLDELMEAVRYYTK-KTGRRVSFEYGLMSGENDSVEIAEELSA 309 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 ++KGI +NLIP N P +Y+ + + I F + +K++G + IR +G DI AACGQ Sbjct: 310 LIKGIKCHVNLIPVNYVPERDYVRTSRSQIFAFEKTLKKNGINVTIRREQGSDIAAACGQ 369 Query: 365 LKS 367 L++ Sbjct: 370 LRA 372 >gi|281419754|ref|ZP_06250753.1| radical SAM enzyme, Cfr family [Prevotella copri DSM 18205] gi|281406283|gb|EFB36963.1| radical SAM enzyme, Cfr family [Prevotella copri DSM 18205] Length = 355 Score = 213 bits (541), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 135/375 (36%), Positives = 203/375 (54%), Gaps = 30/375 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K+ L+G+ EL++ +G+P Q+ KW+Y + ++ M++IS+ R L Sbjct: 4 EKKYLLGLTLAELKQVAKDLGMPA----FTGGQMAKWLYEQHVKSIDEMTNISKANRAKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I D + S DGT K+L FP R G +ETVYIP+K R TLCVSSQVGC Sbjct: 60 AAEYEIGCFGYSDAQHSVDGTIKYL--FPTR--SGKF-VETVYIPDKDRATLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG Q +L A +IL QV +P V K++NIV Sbjct: 115 KMNCLFCQTGKQGFEGSLPAGDILNQVY------------------SLPEVD-KLTNIVF 155 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MG GEP+ N DNV ++ I + + G ++S +RIT+S+ G + R EE +AIS+H Sbjct: 156 MGQGEPMDNLDNVLRATEILTANYGWAWSPKRITVSSVGVKNKLKRFLEESDCHVAISMH 215 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 R L+P R +E +++ R+Y S+ RR++FEY++ KG+NDS + A +IK Sbjct: 216 DPIPSERAELMPAERGMGIEQVVELLRNYD-FSHQRRLSFEYIVFKGVNDSMQHAKAIIK 274 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 ++KG+ + NLI F+ P D + + F + + + G + IR RG DI AACG Sbjct: 275 LVKGLDCRFNLIRFHQIPDIPLQGVDDEKMEQFRDYLTQHGVFTTIRASRGQDIYAACGL 334 Query: 365 LKSLSKRIPKVPRQE 379 L S SK+I ++ E Sbjct: 335 L-STSKKIGEIREHE 348 >gi|225856442|ref|YP_002737953.1| ribosomal RNA large subunit methyltransferase N [Streptococcus pneumoniae P1031] gi|254807219|sp|C1CJL5|RLMN_STRZP RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|225724466|gb|ACO20318.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae P1031] Length = 361 Score = 213 bits (541), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 128/366 (34%), Positives = 209/366 (57%), Gaps = 30/366 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLTHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DQFVVNPLKQGIVQE--SADGTVKYLFELPDGML-----IETVLMCQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI+ Q++L + D G ++ +IS+IV Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RISHIV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N++NV +D G++ R IT+S SG I +E + V LA+S Sbjct: 159 VMGIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSISGLAHKIRDFADEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ INR +P+E L A +Y +N RR+TFEY+ML +ND AL L Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277 Query: 303 IKILKGI--PAKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++LK I + +NLIP+NP +Y S ++ ++ F + +K+ G + +R G DI Sbjct: 278 AELLKNIKKSSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGGNCVVRQEHGTDID 337 Query: 360 AACGQL 365 AACGQL Sbjct: 338 AACGQL 343 >gi|210622414|ref|ZP_03293146.1| hypothetical protein CLOHIR_01094 [Clostridium hiranonis DSM 13275] gi|210154230|gb|EEA85236.1| hypothetical protein CLOHIR_01094 [Clostridium hiranonis DSM 13275] Length = 342 Score = 213 bits (541), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 132/367 (35%), Positives = 201/367 (54%), Gaps = 30/367 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K++L E++E + +IG R +Q++ WIY +G + F M +I + +R L Sbjct: 4 KKALKNFTEAEMKEFMKEIG----EKAFRGTQVYSWIY-KGAKTFDDMKNIPKSLREKLE 58 Query: 66 QHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I +I + S DG T+K+L I IETV + SR T+CVS+QVGC Sbjct: 59 EVSYIGNIDIELKLESKDGKTKKYLFLLNDGNI-----IETVMMDYDSRVTVCVSNQVGC 113 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC + LVRNL EIL Q++ + G+++SN+V+ Sbjct: 114 RMGCRFCASTMDGLVRNLEPWEILDQIM-----------------KIQEDTGKRVSNLVL 156 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243 MG GEPL N+DN K+ L I +D GL+ R ITLST G VP I + + EI + LAISL Sbjct: 157 MGSGEPLDNYDNTKQFLKIVNDENGLNIGYRHITLSTCGIVPKIYELADLEIPINLAISL 216 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ ++ R ++P+ KY ++ ++DACR+Y +N RR+TFEY ++KG+ND ++A L Sbjct: 217 HSPYDEKRKEIMPVANKYSIKEILDACRYYIKKTN-RRVTFEYSLIKGVNDGKKEAEALA 275 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LKG+ +NLIP N ++ D+ I F + ++ + +R G DI ACG Sbjct: 276 SLLKGMLCHVNLIPINEVDERDFKKPDKAFIYKFRDYLEERNIPATVRISMGSDISGACG 335 Query: 364 QLKSLSK 370 QL+ K Sbjct: 336 QLRRKHK 342 >gi|332204776|gb|EGJ18841.1| radical SAM superfamily protein [Streptococcus pneumoniae GA47901] Length = 361 Score = 213 bits (541), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 128/366 (34%), Positives = 209/366 (57%), Gaps = 30/366 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DQFVVNPLKQGIVQE--SADGTVKYLFELPDGML-----IETVLMCQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI+ Q++L + D G ++ +IS+IV Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RISHIV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N++NV +D G++ R IT+S SG I +E + V LA+S Sbjct: 159 VMGIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSISGLAHKIRDFADEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ INR +P+E L A +Y +N RR+TFEY+ML +ND AL L Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277 Query: 303 IKILKGI--PAKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++LK I + +NLIP+NP +Y S ++ ++ F + +K+ G + +R G DI Sbjct: 278 AELLKNIKKSSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGGNCVVRQEHGTDID 337 Query: 360 AACGQL 365 AACGQL Sbjct: 338 AACGQL 343 >gi|167772290|ref|ZP_02444343.1| hypothetical protein ANACOL_03667 [Anaerotruncus colihominis DSM 17241] gi|167665393|gb|EDS09523.1| hypothetical protein ANACOL_03667 [Anaerotruncus colihominis DSM 17241] Length = 359 Score = 213 bits (541), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 128/368 (34%), Positives = 197/368 (53%), Gaps = 37/368 (10%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 +++E+ ++G+P R R QI+ W++ + + DF M+++ +R L + F I Sbjct: 12 QQMEKLTAEMGLP----RFRAGQIFGWLHEKRVSDFDEMTNLPAALRSQLAEKFYINAIR 67 Query: 75 IVDEKISC-DGTRKWLLRF-PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132 + +S DGT K+L C+ E+V + TLC+SSQVGC + C FC Sbjct: 68 VKKRLVSSIDGTVKYLYELRDGNCV------ESVLMHYHHGNTLCISSQVGCRMGCRFCA 121 Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192 + VR+LTA E+L +V +A++ G ++ +VMMG+GEPL Sbjct: 122 STIGGRVRDLTASEMLDEVYMAQA-----------------DSGERVDGVVMMGIGEPLD 164 Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLR 251 NFDNV L I SD GL+ R ++LST G V I + E + + L++SLHA ++ +R Sbjct: 165 NFDNVMAFLEILSDPRGLNLGLRHVSLSTCGLVDRIYALAERRLQLTLSVSLHAPNDAIR 224 Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311 + +P+N +Y ++ L+ ACR Y + RRI+FEY ++ G ND+P A L L+G+ A Sbjct: 225 SRSMPVNARYNVDTLLRACRDYFA-ATGRRISFEYALIAGENDAPEHAAELAARLRGMGA 283 Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK----- 366 +NLIP NP Y D+ I F ++ G ++ IR G DI AACGQL+ Sbjct: 284 HVNLIPVNPVAETGYRRGDRAAIERFQNELRLRGVNATIRRELGADISAACGQLRRQDAD 343 Query: 367 -SLSKRIP 373 S S R+P Sbjct: 344 ASTSGRVP 351 >gi|148985883|ref|ZP_01818977.1| hypothetical protein CGSSp3BS71_00907 [Streptococcus pneumoniae SP3-BS71] gi|147922029|gb|EDK73153.1| hypothetical protein CGSSp3BS71_00907 [Streptococcus pneumoniae SP3-BS71] gi|301799783|emb|CBW32352.1| Radical SAM protein [Streptococcus pneumoniae OXC141] Length = 361 Score = 213 bits (541), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 126/367 (34%), Positives = 210/367 (57%), Gaps = 30/367 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + IV E S DGT K+L P + IE V + + ++CV++QVG Sbjct: 58 DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IEIVLMCQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI+ Q++L + D G ++ ++++IV Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYF-DERGQDE-----------RVNHIV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N++NV +D G++ R IT+STSG I +E + V LA+S Sbjct: 159 VMGIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ INR +P+E L A +Y +N RR+TFEY+ML +ND AL L Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++LK I + +NLIP+NP +Y S ++ ++ F + +K+ G + +R G DI Sbjct: 278 AELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGGNCVVRQEHGTDID 337 Query: 360 AACGQLK 366 AACGQL+ Sbjct: 338 AACGQLR 344 >gi|113955511|ref|YP_731551.1| ribosomal RNA large subunit methyltransferase N [Synechococcus sp. CC9311] gi|123132407|sp|Q0I7M1|RLMN_SYNS3 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|113882862|gb|ABI47820.1| radical SAM enzyme, Cfr family protein [Synechococcus sp. CC9311] Length = 346 Score = 213 bits (541), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 131/367 (35%), Positives = 194/367 (52%), Gaps = 37/367 (10%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR-HLLNQ 66 +L+G + ELEE + G P R Q+ W+Y +G+RD QG++ + + R L N+ Sbjct: 4 ALLGRSKSELEEWAVAQGQPA----FRGRQLHDWLYAKGVRDLQGITVLPKAWRASLQNE 59 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 S+ + ++S D T K LL +ETV IP R T+CVSSQVGC + Sbjct: 60 GVSVGRLHEQERRVSADATTKLLL-----GTEDGETLETVGIPTDQRLTVCVSSQVGCPM 114 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG L R+L EI+ QVL R ++ R+ S++V MG Sbjct: 115 ACRFCATGKGGLQRSLAGHEIVAQVLSIREVME-----------------RRPSHVVFMG 157 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE----EIG---VML 239 MGEPL N + V +S+ +D +G+ +RRIT+ST G + R+ + ++G L Sbjct: 158 MGEPLLNIEAVLESIRCLNDDLGIG--QRRITVSTVGVPHTLPRLADLALKQLGRAQFTL 215 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA + LR L+P + YP + L+D CR+Y RR++FEY++L G+ND P A Sbjct: 216 AVSLHAPNQALREELIPTAKTYPYDALLDDCRYYLN-KTGRRVSFEYILLGGVNDHPHHA 274 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L + G + +NLI +NP E+ + I F ++R G + +R RGLD Sbjct: 275 SELADRVGGFQSHVNLIAYNPIEEEEFQRPTTQRIEGFRRVLERRGVAVSLRASRGLDQD 334 Query: 360 AACGQLK 366 AACGQL+ Sbjct: 335 AACGQLR 341 >gi|307638089|gb|ADN80539.1| Ribosomal RNA large subunit methyl transferase N [Helicobacter pylori 908] gi|325996690|gb|ADZ52095.1| Ribosomal RNA large subunit methyltransferase N [Helicobacter pylori 2018] gi|325998282|gb|ADZ50490.1| Ribosomal RNA large subunit methyltransferase N [Helicobacter pylori 2017] Length = 357 Score = 213 bits (541), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 131/354 (37%), Positives = 197/354 (55%), Gaps = 31/354 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R Q++ W+Y + F+ M ++ S++ L Q F++ EI + S DG++K+L + Sbjct: 21 FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEIAHVRESVDGSKKYLFK 80 Query: 92 -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141 F A + ++ ET + E + T+CVS Q+GC + CSFC+T VRN Sbjct: 81 SLRDNHTFEAVLLKMKDKKIDEETNAVLEGEKHTVCVSCQIGCQVGCSFCFTQKGGFVRN 140 Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 L A EI+ Q LL + E +P K+ NIV MGMGEPL N D V K++ Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKVLNIVFMGMGEPLNNLDEVCKAI 186 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260 I + G+ S +RIT+STSG I G+ +GV LAISLHAV + R+ L+P+N+K Sbjct: 187 EIFN--TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244 Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 Y +E +++ R +P L +R+ FEY+++K +NDS A L+K+L GI +K+NLI FNP Sbjct: 245 YNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303 Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372 G ++ + F++ + G IR + LDI AACGQL K L ++I Sbjct: 304 HEGSKFERPSLESARMFADFLNAKGLLCTIRESKALDIEAACGQLREKKLQQKI 357 >gi|310659155|ref|YP_003936876.1| fe-s-cluster redox enzyme [Clostridium sticklandii DSM 519] gi|308825933|emb|CBH21971.1| putative Fe-S-cluster redox enzyme [Clostridium sticklandii] Length = 341 Score = 213 bits (541), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 135/368 (36%), Positives = 198/368 (53%), Gaps = 40/368 (10%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K + + ELEE ++K+G + R QI+ + V+GI F + +IS+ ++ L Sbjct: 2 KSDALSLTFSELEEEIVKLG----EQKFRAKQIYPKL-VQGISSFDEIGNISKVLKEKLK 56 Query: 66 QHFSI----IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 + I +Y + E DGTRK+LL+ + I IE V + K ++C+SSQ Sbjct: 57 ERLYISKVSVYKVLTSE---LDGTRKYLLQLDDKNI-----IEAVLMRYKHGLSICISSQ 108 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC + CSFC + LVRNLTA E++ Q+L ++ V +ISN Sbjct: 109 VGCLMGCSFCASTIDGLVRNLTAGEMIGQILAVQN-----------------DVKERISN 151 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI---ARVGEEIGVM 238 +VMMG GEPL NFDN+ K L I L+ R IT+ST G VP + A++G I Sbjct: 152 VVMMGSGEPLDNFDNLIKFLDIVHQEDSLNIGYRHITISTCGVVPKVNELAKLGYPIN-- 209 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LAISLH +++ R I++P+ YP++ +I A + Y + RR+TFEY ++KG+NDS D Sbjct: 210 LAISLHETTHEKRKIIMPVENAYPIDSVIKAAKDYAN-TTKRRVTFEYALIKGVNDSNED 268 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L K+LKG+ +NLIP N Y D+ I F +K + + +R G DI Sbjct: 269 ANRLSKLLKGMLCHVNLIPVNTVEERTYKRPDKAAINAFLSVLKSNHIEATVRREMGKDI 328 Query: 359 LAACGQLK 366 ACGQL+ Sbjct: 329 NGACGQLR 336 >gi|282890718|ref|ZP_06299238.1| hypothetical protein pah_c026o038 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499311|gb|EFB41610.1| hypothetical protein pah_c026o038 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 364 Score = 213 bits (541), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 131/343 (38%), Positives = 193/343 (56%), Gaps = 27/343 (7%) Query: 32 RMRTSQIWKWIYVRG-IRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLL 90 R+ S I++ + G + + +QE+R + ++ S+ + D K DG Sbjct: 27 RVHASLIYQEFFRSGSLNAAHPAFNNAQEIRTAILENVSVSQLSLGDRKE--DGKTG--- 81 Query: 91 RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150 +F + G +E+E V IP +S GTLC+SSQVGC + C+FC TG L+RNLT EEI+ Q Sbjct: 82 KFLGKTADG-LEVEFVQIPMQSGGTLCISSQVGCQMGCAFCETGKMGLLRNLTTEEIVSQ 140 Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210 V LA+ F N+V MGMGEPL NFD V +++ I +D G Sbjct: 141 VYLAKHH-NQFS----------------FRNLVFMGMGEPLDNFDAVMQAVRIFNDPKGF 183 Query: 211 SFSKRRITLSTSGFVPNIARVGEEIGVM--LAISLHAVSNDLRNILVPINRKYPLEMLID 268 F +RR+T+STSG V I ++ G LA+S++A +++LRN L+P+NRKY L+ L + Sbjct: 184 GFGRRRMTISTSGCVDGIDKLANLGGQAPNLAVSINAPTDELRNRLMPVNRKYDLQTLYE 243 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 A + Y R+I YV+L+G ND AL L + LKG+ KINLIP+NP + Sbjct: 244 AMQGYC-TKTGRQILIAYVLLQGQNDQIEHALQLSEYLKGLNVKINLIPYNPQSRDRFQA 302 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 D I F++ +++ GY + +R +G DI+AACGQL +L R Sbjct: 303 PDLNTIEAFTQSLRQKGYYTLLRLTKGQDIMAACGQLGNLKLR 345 >gi|147678122|ref|YP_001212337.1| Fe-S-cluster redox protein [Pelotomaculum thermopropionicum SI] gi|205829798|sp|A5D1B6|RLMN_PELTS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|146274219|dbj|BAF59968.1| predicted Fe-S-cluster redox enzyme [Pelotomaculum thermopropionicum SI] Length = 368 Score = 212 bits (540), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 123/338 (36%), Positives = 181/338 (53%), Gaps = 26/338 (7%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTR-KWLL 90 R R Q+ W++ +G F+ M+++ +R L+ I PEI+ +K+S K+L Sbjct: 40 RYRAGQVAIWVFQKGAESFREMTNLPANLREKLDAAAVISRPEILAKKVSSKKDAVKYLF 99 Query: 91 RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150 P +E+V++ ++CVS+Q GC + C FC + L RNL+ EI Q Sbjct: 100 GLP-----DGQAVESVFMKHAYGNSVCVSTQAGCRMGCRFCASALGGLTRNLSPGEIYDQ 154 Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210 VL R G +IS++V+MG GEPL N+D + + GL Sbjct: 155 VLGIRR-----------------DTGERISSVVLMGSGEPLDNYDATLTFIKNVTAPYGL 197 Query: 211 SFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 R IT+ST G VP I R+ E++ + LA+SLHA ++ LR+ILVP+NRKYPL L+ A Sbjct: 198 HIGCRHITVSTCGLVPGIRRLAREKLALTLAVSLHAPNDRLRDILVPVNRKYPLTELMAA 257 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG-IPAKINLIPFNPWPGCEYLC 328 CR Y RR+TFEY +L G+ND A L+++LKG +P +NLIP NP P Sbjct: 258 CRDY-AQETGRRVTFEYALLAGVNDRKEHAEELVRLLKGKMPCHVNLIPANPVPERGVKT 316 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + + F + ++R G + +R G DI AACGQL+ Sbjct: 317 PSRLQVELFKKILERHGLAVTVRRGLGADIDAACGQLR 354 >gi|308064180|gb|ADO06067.1| ribosomal RNA large subunit methyltransferase N [Helicobacter pylori Sat464] Length = 357 Score = 212 bits (540), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 133/354 (37%), Positives = 197/354 (55%), Gaps = 31/354 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R Q++ W+Y + F+ M ++ S++ L Q F++ EI + S DG++K+L + Sbjct: 21 FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKYLFK 80 Query: 92 -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141 F A + ++ ET I E + T+CVS Q+GC + CSFC+T VRN Sbjct: 81 SLRDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGFVRN 140 Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 L A EI+ Q LL + E +P K NIV MGMGEPL N D V K++ Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKALNIVFMGMGEPLNNLDEVCKAI 186 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260 I + G+ S +RIT+STSG I G+ +GV LAISLHAV + R+ L+P+N+K Sbjct: 187 EIFN--AGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244 Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 Y +E +++ R +P L +R+ FEY+++K +NDS A L+K+L GI +K+NLI FNP Sbjct: 245 YNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303 Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372 G ++ + F++ + G IR + LDI AACGQL K LS++I Sbjct: 304 HEGSKFERPSLESARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQI 357 >gi|182683687|ref|YP_001835434.1| hypothetical protein SPCG_0717 [Streptococcus pneumoniae CGSP14] gi|205829907|sp|B2INF0|RLMN_STRPS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|182629021|gb|ACB89969.1| hypothetical protein SPCG_0717 [Streptococcus pneumoniae CGSP14] Length = 361 Score = 212 bits (540), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 125/368 (33%), Positives = 208/368 (56%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLTHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DQFVVNPLKQGIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L EI+ Q++L + + E ++++IV Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFAERGQDE------------RVNHIV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N++NV +D G++ R IT+STSG I +E + V LA+S Sbjct: 159 VMGIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRNFADEGVQVNLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ INR +P+E L A +Y +N RR+TFEY+ML +ND AL L Sbjct: 219 LHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEVNDGVEQALEL 277 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++LK I + +NLIP+ P +Y S ++ ++ F + +K+ G + +R G DI Sbjct: 278 AELLKNIKKLSYVNLIPYTPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDID 337 Query: 360 AACGQLKS 367 AA GQL+S Sbjct: 338 AAYGQLRS 345 >gi|291549489|emb|CBL25751.1| 23S rRNA m(2)A-2503 methyltransferase [Ruminococcus torques L2-14] Length = 346 Score = 212 bits (540), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 119/354 (33%), Positives = 201/354 (56%), Gaps = 29/354 (8%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 EEL++ + IG R QI++W++V+ + F M+++S+ +R L +++ I+ Sbjct: 11 EELQKEMATIGEKA----FRAKQIYEWLHVKLVDHFDEMTNLSKALREKLEENYEILPVV 66 Query: 75 IVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133 +++ +IS DGT K+L R G V +E+V + K ++C+SSQVGC + C+FC + Sbjct: 67 MLERQISQIDGTNKFLFRL----YDGNV-VESVLMKYKHGNSVCISSQVGCRMGCAFCAS 121 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 LVRNL+ E+L Q+ + + G+ ++SN+V+MG GEP+ N Sbjct: 122 TIGGLVRNLSPSEMLGQIYQIQKISGE-----------------RVSNVVIMGTGEPMDN 164 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252 +DN K + + +D GL+ S+R +T+ST G VP + + +E + + LA+SLH + + R Sbjct: 165 YDNFLKFIHLLTDEHGLNISQRNVTVSTCGIVPKMKELAKEHLQITLALSLHGSNQEKRR 224 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312 L+P+ KY + ++ AC Y RR++FEY ++ G+ND+ DA LI +L+ Sbjct: 225 KLMPVANKYDITEVLAACDEYFK-ETGRRVSFEYSLVHGVNDTDEDAQELIHLLRHKNCH 283 Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 INLIP NP +++ +K + F +++SG + IR G DI ACGQL+ Sbjct: 284 INLIPVNPVKERDFVRPSRKSALNFKNKLEKSGINVTIRREMGSDIDGACGQLR 337 >gi|227500112|ref|ZP_03930183.1| Fe-S-cluster redox enzyme [Anaerococcus tetradius ATCC 35098] gi|227217827|gb|EEI83124.1| Fe-S-cluster redox enzyme [Anaerococcus tetradius ATCC 35098] Length = 341 Score = 212 bits (540), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 123/355 (34%), Positives = 199/355 (56%), Gaps = 30/355 (8%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 +E+E +K G + + R Q+++ I+V+ I DF M+D+S+E+R L ++++ + Sbjct: 11 KEIESIFIKEG----YQKFRAKQVYRQIHVKRINDFDKMTDLSKEMREKLGENYAFPKMK 66 Query: 75 IVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133 ++ E +S D T+K+L I IE V++ R T+C+SSQVGC + C FC + Sbjct: 67 LLKEFVSKLDSTKKYLFSLDDGNI-----IEAVFMDYDKRKTICISSQVGCRMGCKFCAS 121 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 LVRNLTA E++ +V E I G +I+NIV+MG+GEPL N Sbjct: 122 TKNGLVRNLTAGELIEEVY----------ELERING--------EINNIVIMGIGEPLDN 163 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRN 252 +DN+ K + + +++ G S R ITLSTSG P I ++ + ++ V LA+SLH ++ R Sbjct: 164 YDNIVKFIDLITNADGRDLSHRSITLSTSGLAPMIRKLADSKLDVNLALSLHYANDKKRQ 223 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312 +P+ KY +E L++A +Y + RR++FEYV++ G+N++ D NL +LK Sbjct: 224 KFMPVANKYKIEDLLEATDYYLAKT-KRRVSFEYVVIDGVNNTDSDVDNLYSLLKNKNVH 282 Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 INLIP NP Y + F + + + ++ IR G DI A+CGQL++ Sbjct: 283 INLIPLNPIEEFAYNRPKSSALTEFRDKLVKRKLNATIRRSMGSDIDASCGQLRN 337 >gi|16331844|ref|NP_442572.1| hypothetical protein sll0098 [Synechocystis sp. PCC 6803] gi|3287936|sp|Q55880|RLMN_SYNY3 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|1208474|dbj|BAA10642.1| sll0098 [Synechocystis sp. PCC 6803] Length = 350 Score = 212 bits (540), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 125/338 (36%), Positives = 181/338 (53%), Gaps = 27/338 (7%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93 R QI +W+Y +G R M+D+ + R N H+ I I ++ D TRK+LLR Sbjct: 29 RGKQIHQWLYQKGARSLTAMTDLPKVWREK-NVHYPIGRSVIDHCAVAPDHTRKYLLRLA 87 Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153 I IETV IP R T+CVSSQVGC++ C+FC TG +RNL + EI+ QVL Sbjct: 88 DGLI-----IETVGIPSSKRLTVCVSSQVGCAMDCNFCATGKGGFIRNLESHEIVDQVLT 142 Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213 + + ++SN+V MGMGEPL N V K++ + +G+ Sbjct: 143 VQEEFHE-----------------RVSNVVFMGMGEPLLNLPQVVKAVECLNQVVGIG-- 183 Query: 214 KRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 +R +T+ST G I ++ + + V A+SLHA + LR L+P R YPLE L+ CR Sbjct: 184 QRALTISTVGLPGKIRQLADRHLQVTFAVSLHAPNQTLRQSLIPSARHYPLEQLLADCRA 243 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y + RR+TFEYV+L G+ND P A L + L+G +NLIP+NP +Y + Sbjct: 244 YVE-TTGRRVTFEYVLLAGVNDQPVHAEELAQKLRGFQTHVNLIPYNPISEVDYQRPTEA 302 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 I F++ + + +R RG+ AACGQL++ K Sbjct: 303 QINQFAQVLSDHRIAVSVRYSRGVQADAACGQLRASRK 340 >gi|83816743|ref|YP_446232.1| radical SAM protein [Salinibacter ruber DSM 13855] gi|294508165|ref|YP_003572223.1| Conserved hypothetical protein containing radical SAM domain [Salinibacter ruber M8] gi|123753375|sp|Q2S0P9|RLMN_SALRD RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|83758137|gb|ABC46250.1| radical SAM enzyme, Cfr family [Salinibacter ruber DSM 13855] gi|294344493|emb|CBH25271.1| Conserved hypothetical protein containing radical SAM domain [Salinibacter ruber M8] Length = 369 Score = 212 bits (539), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 129/369 (34%), Positives = 198/369 (53%), Gaps = 32/369 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 L M R L++ + + G P R R Q++ W+Y +G+ DF MS++ + +R L + Sbjct: 19 DLKTMGRAGLKDFVAEHGAP----RYRGDQLFNWVYGKGVSDFDRMSNLPKRMRRGLQRD 74 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP------EKSRGTLCVSSQ 121 ++ EIV+++ + D T K L P+ E ETV IP E R T+CVSS+ Sbjct: 75 ATVEDIEIVEQQQAADRTVKALFELPS-----GREAETVLIPAIDERGEARRLTVCVSSE 129 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC++ C FC TG NLT I QV + + GR ++N Sbjct: 130 VGCAMGCEFCATGRMGFRENLTPGAIFDQVWHMNEVAQEH-------------FGRPVTN 176 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240 IV MGMGEPL N+D V S+SI +D L+ S ++IT+ST G I + ++ + LA Sbjct: 177 IVFMGMGEPLLNYDAVLDSISILTDEDSLNLSAQKITVSTVGLARRIKDLADDQLRTNLA 236 Query: 241 ISLHAVSNDLRNILVPINR--KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 +SLHA N+ R+ ++P+N K L L +A ++Y R+IT+EY + KG+NDS D Sbjct: 237 VSLHAPDNETRSRIMPVNEAEKTSLPALKEALQYYFD-KTGRQITYEYCLFKGVNDSETD 295 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A NL + + P+K+NL+ +NP G + + + + F + + + G + +R RG DI Sbjct: 296 ARNLADVTRWAPSKVNLLMYNPVEGLNFERTSEAQLDRFVQVLVQEGVTVTVRRSRGQDI 355 Query: 359 LAACGQLKS 367 AACGQL + Sbjct: 356 DAACGQLAN 364 >gi|119510469|ref|ZP_01629602.1| hypothetical protein N9414_01747 [Nodularia spumigena CCY9414] gi|119464891|gb|EAW45795.1| hypothetical protein N9414_01747 [Nodularia spumigena CCY9414] Length = 352 Score = 212 bits (539), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 134/360 (37%), Positives = 192/360 (53%), Gaps = 31/360 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+G EL + + G P R Q+ WIY +G+R +S ++ R + + Sbjct: 21 LLGASVAELSLWVQQQGQPA----YRGKQLHDWIYHKGVRSLADISAFPKQWRAEVAE-V 75 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 I I ++ DGT K+LL+ I IETV IP R T+CVS+QVGC + C Sbjct: 76 PIGRSTIHHRAVAPDGTIKYLLKLADGQI-----IETVGIPTAKRLTVCVSTQVGCPMAC 130 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG RNL EI+ QVL + ED + +++S++V MGMG Sbjct: 131 DFCATGKGGFTRNLARHEIVDQVLTVQ---------EDFQ--------QRVSHVVYMGMG 173 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVS 247 EPL N +NV KSL + +G+ +R +T+ST G I ++ + + V LA+SLHA + Sbjct: 174 EPLLNTENVLKSLKSLNQDVGIG--QRSLTVSTVGIRDRIRQLAQHNLQVTLAVSLHAPN 231 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 LR L+P R YPLE L+D CR Y ++ RRI+FEYV+L G ND P A+ L K L+ Sbjct: 232 QALREELIPSARPYPLEDLLDECREYVEITR-RRISFEYVLLAGFNDLPEHAMQLAKCLR 290 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 G + +NLIP+NP +Y I F +K+ + +R RGL+ AACGQL++ Sbjct: 291 GFQSHVNLIPYNPISEVDYKRPSSDRIQAFVNILKQQNTAVSVRYSRGLEADAACGQLRA 350 >gi|326203176|ref|ZP_08193042.1| radical SAM enzyme, Cfr family [Clostridium papyrosolvens DSM 2782] gi|325986822|gb|EGD47652.1| radical SAM enzyme, Cfr family [Clostridium papyrosolvens DSM 2782] Length = 349 Score = 212 bits (539), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 136/361 (37%), Positives = 198/361 (54%), Gaps = 30/361 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L+ M EELE+ L ++G + R QI+KW GIR F M++IS+++R L + Sbjct: 3 NLMDMTLEELEQMLSEMG----QQKFRAKQIFKWTN-SGIRSFDDMTNISKQLRDELVKV 57 Query: 68 FSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I +I D+ + D T K+L I IE+V + K T C+SSQ GC + Sbjct: 58 TKISRIKIADKLQSQIDSTVKYLFELEDGNI-----IESVIMEYKHGFTACISSQAGCRM 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC + + RNLT E+L QV+ + ED G +I +IV+MG Sbjct: 113 GCKFCASTGAEFSRNLTPGEMLDQVMTMQ---------ED--------SGNRIGHIVLMG 155 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 +GEPL N++NV K L I + GL R I+LST G VP + ++ +E I + L++SLH+ Sbjct: 156 IGEPLDNYENVIKFLKIVNHPDGLMIGMRNISLSTCGVVPRMLQLAQENIPITLSVSLHS 215 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +D R+ ++P+N+ Y ++ LI AC+ Y S RRITFEY M+ G NDS +DA L + Sbjct: 216 ARDDKRSAMMPVNKAYCIDKLISACKIYTE-STKRRITFEYAMISGENDSEQDARELAGL 274 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG+ +NLIP N G Y S + I F ++ G + +R G DI AACGQL Sbjct: 275 LKGMLCHVNLIPVNTVTGNGYKKSSRIHIDKFKNILESKGIETTVRRELGSDINAACGQL 334 Query: 366 K 366 + Sbjct: 335 R 335 >gi|327542013|gb|EGF28512.1| ribosomal RNA large subunit methyltransferase N [Rhodopirellula baltica WH47] Length = 365 Score = 212 bits (539), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 131/335 (39%), Positives = 184/335 (54%), Gaps = 22/335 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI +W++ F+ M+D+ ++R L +HF+I S DGT K L+R Sbjct: 42 FRAKQIRRWLFSGRATSFEEMTDLPAKLRAQLEEHFAIFNATEAVVSKSKDGTEKILVRL 101 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 GG E+E V + + R ++CVSSQVGC++ C FC +G + RNLT EIL Q+L Sbjct: 102 ---ADGG--EVECVLLRDGPRRSICVSSQVGCAMGCVFCASGLDGVDRNLTGGEILEQML 156 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 + L P E ++S+IVMMGMGEPL N V +L +A GL Sbjct: 157 RLQQRL---PADE------------RLSHIVMMGMGEPLANLPGVLSALDVARSEDGLGI 201 Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S RRIT+ST G P I ++ I LA+SLHA +++LR+ LVP+NRK +E ++ A Sbjct: 202 SPRRITISTVGLPPAIDKLAAAGIPYNLAVSLHAPNDELRSELVPVNRKIGIEPVLQAAD 261 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 Y S RR+TFEYV+L GIND A L +IL+G +N+IP+NP G Y Sbjct: 262 RYFHAS-GRRLTFEYVLLGGINDGDEHARQLSQILRGRSVMMNVIPYNPVAGLPYRTPSG 320 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 I F ++ +G + R +G +I AACGQL+ Sbjct: 321 AAIARFRAILESAGVNVNFRQRKGDEINAACGQLR 355 >gi|325662241|ref|ZP_08150856.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae bacterium 4_1_37FAA] gi|325471493|gb|EGC74714.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae bacterium 4_1_37FAA] Length = 358 Score = 212 bits (539), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 124/360 (34%), Positives = 199/360 (55%), Gaps = 30/360 (8%) Query: 10 IGMMR-EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 IG R EEL+E + IG R Q+++W++V+ +R F M+++S+ +R L + + Sbjct: 8 IGSFRFEELKEEMTSIGEKA----FRAKQVYEWLHVKLVRSFDEMTNLSKPLREKLARQY 63 Query: 69 SIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 I E++D ++S DGT K+L R G V +E+V + K ++C+SSQVGC + Sbjct: 64 EIREVEMLDRQVSAMDGTNKFLFRLS----DGHV-VESVLMKYKHGNSVCISSQVGCRMG 118 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC + L RNLT E+L Q+ + + G+ +++N+V+MG Sbjct: 119 CRFCASTIGGLERNLTPSEMLGQIYQIQRISGE-----------------RVANVVVMGT 161 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 GEPL N++N+ K + + +D GL S+R +T+ST G VP + + EE + + LA+SLH Sbjct: 162 GEPLDNYENLLKFIQMLTDEHGLHISQRNVTVSTCGIVPKMLELAEEHLQITLALSLHGS 221 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 + + R L+P+ KY L +++AC Y RR+TFEY ++ G+ND+ DA L +L Sbjct: 222 TQEKRKKLMPVANKYELSEVLEACDIYFA-KTGRRMTFEYSLVHGVNDTEEDAKELSALL 280 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 INLIP NP ++ ++ F +++SG + IR G DI ACGQL+ Sbjct: 281 SHKNCHINLIPVNPIKERDFERPTREAAEKFKNKLEKSGINVTIRREMGSDIDGACGQLR 340 >gi|219669867|ref|YP_002460302.1| radical SAM protein [Desulfitobacterium hafniense DCB-2] gi|259491984|sp|B8FS78|RLMN_DESHD RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|219540127|gb|ACL21866.1| radical SAM enzyme, Cfr family [Desulfitobacterium hafniense DCB-2] Length = 357 Score = 212 bits (539), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 132/376 (35%), Positives = 206/376 (54%), Gaps = 37/376 (9%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN +K+ + + EL + ++G+P + R Q+++W+ + +++++ + +I Sbjct: 1 MNTMKRMDCRDLNQSELTQHCAELGLP----KFRGRQVFQWVQQKAVQNWEELRNIGAGD 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYI-----PEKSRGT 115 R L + + V E+I+ DGTRK+L R C G +E V + + R T Sbjct: 57 RQKLQEGLFLQPLRKVREQIAQDGTRKFLFR----CADGET-LECVLMDYDRRKNRDRHT 111 Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL----LARSLLGDFPGCEDIEGMV 171 +CVS+Q+GC++ C+FC TG RNL+ EIL QVL L R DF Sbjct: 112 VCVSTQIGCAVGCAFCATGLGGWRRNLSPGEILGQVLDITYLMRQEDPDF---------- 161 Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231 +++NIV MGMGEPL N++ V K++ + +D G RR+T+STSG P I ++ Sbjct: 162 ------QVTNIVFMGMGEPLLNYEAVLKAIELLNDPEGQGIGMRRMTISTSGVAPKIRQL 215 Query: 232 GEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 ++ V LA+SLH+ N R+ L+P+NRKYPLE L++AC Y L+N RRITFE ++ Sbjct: 216 AKDNPQVGLAVSLHSAHNTTRDQLIPMNRKYPLEELMEACGDYTTLTN-RRITFEIALIS 274 Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI 350 G + A + +LKG A +NLIP NP G K++ F++ ++ G + Sbjct: 275 G-QATLEAAQAVGHLLKGQLAHVNLIPVNPVAGTGMARPTAKEVQQFAQSLESMGIPVSV 333 Query: 351 RTPRGLDILAACGQLK 366 R +G DI AACGQL+ Sbjct: 334 REEKGTDIDAACGQLR 349 >gi|217034559|ref|ZP_03439968.1| hypothetical protein HP9810_874g16 [Helicobacter pylori 98-10] gi|216942979|gb|EEC22462.1| hypothetical protein HP9810_874g16 [Helicobacter pylori 98-10] Length = 357 Score = 212 bits (539), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 133/354 (37%), Positives = 197/354 (55%), Gaps = 31/354 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R Q++ W+Y + F+ M ++ S++ L Q F++ EI + S DG++K+L + Sbjct: 21 FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRQSVDGSKKYLFK 80 Query: 92 -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141 F A + ++ ET I E + T+CVS Q+GC + CSFC+T VRN Sbjct: 81 SLRDNHTFEAVFLKMRDKKIDEETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGFVRN 140 Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 L A EI+ Q LL + E +P K NIV MGMGEPL N D V K++ Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKALNIVFMGMGEPLNNLDEVCKAI 186 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260 I + G+ S +RIT+STSG I G+ +GV LAISLHAV + R+ L+P+N+K Sbjct: 187 EIFN--AGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244 Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 Y +E +++ R +P L +R+ FEY+++K +NDS A L+K+L GI +K+NLI FNP Sbjct: 245 YNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303 Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372 G ++ + F++ + G IR + LDI AACGQL K LS++I Sbjct: 304 HEGSKFERPSLESARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQI 357 >gi|261840101|gb|ACX99866.1| hypothetical protein HPKB_1325 [Helicobacter pylori 52] Length = 357 Score = 212 bits (539), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 133/354 (37%), Positives = 197/354 (55%), Gaps = 31/354 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R Q++ W+Y + F+ M ++ S++ L Q F++ EI + S DG++K+L + Sbjct: 21 FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESIDGSKKYLFK 80 Query: 92 -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141 F A + ++ ET I E + T+CVS Q+GC + CSFC+T VRN Sbjct: 81 SLRDNHTFEAVFLKMRDKKIDEETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGFVRN 140 Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 L A EI+ Q LL + E +P K NIV MGMGEPL N D V K++ Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKALNIVFMGMGEPLNNLDEVCKAI 186 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260 I + G+ S +RIT+STSG I G+ +GV LAISLHAV + R+ L+P+N+K Sbjct: 187 EIFN--TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244 Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 Y +E +++ R +P L +R+ FEY+++K +NDS A L+K+L GI +K+NLI FNP Sbjct: 245 YNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303 Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372 G ++ + F++ + G IR + LDI AACGQL K LS++I Sbjct: 304 HEGSKFERPSLESARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQI 357 >gi|251799946|ref|YP_003014677.1| radical SAM enzyme, Cfr family [Paenibacillus sp. JDR-2] gi|247547572|gb|ACT04591.1| radical SAM enzyme, Cfr family [Paenibacillus sp. JDR-2] Length = 356 Score = 212 bits (539), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 124/343 (36%), Positives = 195/343 (56%), Gaps = 23/343 (6%) Query: 30 HVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWL 89 H + R +Q+W+++Y + + F M+D+ + LL ++++I +++S DGT K L Sbjct: 23 HKKFRATQVWEYLYRKRVTSFADMTDVHPDCVKLLEENYAIQTLVEHTKQVSKDGTVKLL 82 Query: 90 LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149 L+ + IETV + K ++CV++QVGC++ CSFC +G K R+LT+ EI+ Sbjct: 83 LKLDDGNL-----IETVMMRHKFGLSVCVTTQVGCNIGCSFCASGLLKKSRDLTSGEIVE 137 Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209 Q++ + L + G K+S+IV+MG+GEP NF ++ L+ D G Sbjct: 138 QIMKIQLHLDE------------SGQGEKVSHIVVMGIGEPFDNFIHLNDFLTTVKDHKG 185 Query: 210 LSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 L+ R IT+STSG I + + GV LA+SLHA +N+LR ++ INR P+E L+D Sbjct: 186 LAIGPRHITVSTSGLADKIREFADKDQGVNLAVSLHAPNNELRTRIMKINRAIPIEKLMD 245 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL---KGIPAKINLIPFNPW-PGC 324 A +Y +N RRIT EY++LK +ND P AL L +++ + +NLIP+NP Sbjct: 246 AIDYYLERTN-RRITLEYILLKDVNDQPEHALELAELVGDRRRSLVNVNLIPYNPVDEHS 304 Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 +Y S+ I F + +K+ S +R G DI AACGQL+S Sbjct: 305 QYQRSENDSIKGFYDTLKKQDVSVSVRLEHGADIDAACGQLRS 347 >gi|32477801|ref|NP_870795.1| Fe-S-oxidoreductase [Rhodopirellula baltica SH 1] gi|81658686|sp|Q7UHU7|RLMN_RHOBA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|32448358|emb|CAD77872.1| conserved hypothetical protein-putative Fe-S-oxidoreductase [Rhodopirellula baltica SH 1] Length = 371 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 131/335 (39%), Positives = 184/335 (54%), Gaps = 22/335 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI +W++ F+ M+D+ ++R L +HF+I S DGT K L+R Sbjct: 48 FRAKQIRRWLFSGRATSFEEMTDLPAKLRAQLEEHFAIFNATEAVVSKSKDGTEKILVRL 107 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 GG E+E V + + R ++CVSSQVGC++ C FC +G + RNLT EIL Q+L Sbjct: 108 ---ADGG--EVECVLLRDGPRRSICVSSQVGCAMGCVFCASGLDGVDRNLTGGEILEQML 162 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 + L P E ++S+IVMMGMGEPL N V +L +A GL Sbjct: 163 RLQQRL---PADE------------RLSHIVMMGMGEPLANLPGVLSALDVARSEDGLGI 207 Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S RRIT+ST G P I ++ I LA+SLHA +++LR+ LVP+NRK +E ++ A Sbjct: 208 SPRRITISTVGLPPAIDKLAAAGIPYNLAVSLHAPNDELRSELVPVNRKIGIEPVLQAAD 267 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 Y S RR+TFEYV+L GIND A L +IL+G +N+IP+NP G Y Sbjct: 268 RYFHAS-GRRLTFEYVLLGGINDGDEHARQLSQILRGRSVMMNVIPYNPVAGLPYRTPSG 326 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 I F ++ +G + R +G +I AACGQL+ Sbjct: 327 AAIARFRAILESAGVNVNFRQRKGDEINAACGQLR 361 >gi|308062688|gb|ADO04576.1| ribosomal RNA large subunit methyltransferase N [Helicobacter pylori Cuz20] Length = 357 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 132/354 (37%), Positives = 197/354 (55%), Gaps = 31/354 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R Q++ W+Y + F+ M ++ S++ L Q F++ EI + S DG++K+L + Sbjct: 21 FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKYLFK 80 Query: 92 -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141 F A + ++ ET I E + T+CVS Q+GC + C+FC+T VRN Sbjct: 81 SLKDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCTFCFTQKGGFVRN 140 Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 L A EI+ Q LL + E +P K NIV MGMGEPL N D V K++ Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKALNIVFMGMGEPLNNLDEVCKAI 186 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260 I + G+ S +RIT+STSG I G+ +GV LAISLHAV + R+ L+P+N+K Sbjct: 187 EIFN--TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244 Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 Y +E +++ R +P L +R+ FEY+++K +NDS A L+K+L GI +K+NLI FNP Sbjct: 245 YNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303 Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372 G ++ + F++ + G IR + LDI AACGQL K LS++I Sbjct: 304 HEGSKFERPSLESARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQI 357 >gi|331086042|ref|ZP_08335125.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406965|gb|EGG86470.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae bacterium 9_1_43BFAA] Length = 358 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 124/360 (34%), Positives = 199/360 (55%), Gaps = 30/360 (8%) Query: 10 IGMMR-EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 IG R EEL+E + IG R Q+++W++V+ +R F M+++S+ +R L + + Sbjct: 8 IGSFRFEELKEEMTSIGEKA----FRAKQVYEWLHVKLVRSFDEMTNLSKPLREKLARQY 63 Query: 69 SIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 I E++D ++S DGT K+L R G V +E+V + K ++C+SSQVGC + Sbjct: 64 EIREVEMLDRQVSAMDGTNKFLFRLS----DGHV-VESVLMKYKHGNSVCISSQVGCRMG 118 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC + L RNLT E+L Q+ + + G+ +++N+V+MG Sbjct: 119 CRFCASTIGGLERNLTPSEMLGQIYQIQRISGE-----------------RVANVVVMGT 161 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 GEPL N++N+ K + + +D GL S+R +T+ST G VP + + EE + + LA+SLH Sbjct: 162 GEPLDNYENLLKFIQMLTDEHGLHISQRNVTVSTCGIVPKMLELAEEHLQITLALSLHGS 221 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 + + R L+P+ KY L +++AC Y RR+TFEY ++ G+ND+ DA L +L Sbjct: 222 TQEKRKKLMPVANKYELSEVLEACDIYFA-KTGRRMTFEYSLVHGVNDTEEDAKELSALL 280 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 INLIP NP ++ ++ F +++SG + IR G DI ACGQL+ Sbjct: 281 SHRNCHINLIPVNPIKERDFERPTREAAEKFKNKLEKSGINVTIRREMGSDIDGACGQLR 340 >gi|317013192|gb|ADU83800.1| ribosomal RNA large subunit methyltransferase N [Helicobacter pylori Lithuania75] Length = 357 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 132/354 (37%), Positives = 197/354 (55%), Gaps = 31/354 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R Q++ W+Y + F+ M ++ S++ L Q F++ EI + S DG++K+L + Sbjct: 21 FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEIAHVRKSVDGSKKYLFK 80 Query: 92 -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141 F A + ++ ET I E + T+CVS Q+GC + C+FC+T VRN Sbjct: 81 SLRDNHTFEAVLLKMKDKKIDKETNAILEGEKYTVCVSCQIGCQVGCAFCFTQKGGFVRN 140 Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 L A EI+ Q LL + E +P K NIV MGMGEPL N D V K++ Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKALNIVFMGMGEPLNNLDEVCKAI 186 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260 I + G+ S +RIT+STSG I G+ +GV LAISLHAV + R+ L+P+N+K Sbjct: 187 EIFN--TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244 Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 Y +E +++ R +P L +R+ FEY+++K +NDS A L+K+L GI +K+NLI FNP Sbjct: 245 YNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303 Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372 G ++ + F++ + G IR + LDI AACGQL K LS++I Sbjct: 304 HEGSKFERPSLESARMFADFLNAKGLLCTIRESKALDIEAACGQLREKKLSQQI 357 >gi|317010204|gb|ADU80784.1| ribosomal RNA large subunit methyltransferase N [Helicobacter pylori India7] Length = 357 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 132/354 (37%), Positives = 197/354 (55%), Gaps = 31/354 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R Q++ W+Y + F+ M ++ S++ L Q F++ EI + S DG++K+L + Sbjct: 21 FRAKQLYLWLYAKYKTSFKEMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKYLFK 80 Query: 92 -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141 F A + ++ ET I E + T+CVS Q+GC + C+FC+T VRN Sbjct: 81 SLRDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCAFCFTQKGGFVRN 140 Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 L A EI+ Q LL + E +P K NIV MGMGEPL N D V K++ Sbjct: 141 LQASEIIQQALLIK------------EDNNLPL--EKALNIVFMGMGEPLNNLDEVCKAI 186 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260 I + G+ S +RIT+STSG I G+ +GV LAISLHAV + R+ L+P+N+K Sbjct: 187 EIFN--TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244 Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 Y +E +++ R +P L +R+ FEY+++K +NDS A L+K+L GI +K+NLI FNP Sbjct: 245 YNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303 Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372 G ++ + F++ + G IR + LDI AACGQL K LS++I Sbjct: 304 HEGSKFERPSLESAKMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQI 357 >gi|331091583|ref|ZP_08340419.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae bacterium 2_1_46FAA] gi|330403610|gb|EGG83166.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae bacterium 2_1_46FAA] Length = 347 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 125/365 (34%), Positives = 201/365 (55%), Gaps = 29/365 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K+ + EEL++ L IG R+ QI+ W++ + F+ M+++S+ +R Sbjct: 1 MEKKDIRSYTLEELKKELESIG----EKPFRSKQIYSWLHEKLADSFEEMTNLSKALREK 56 Query: 64 LNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L + + I +V+ ++S DGT K+L + +E+V + K ++C+SSQV Sbjct: 57 LEKDYEIYPVTMVERQVSKLDGTNKFLFALRDNHV-----VESVLMRYKHGNSVCISSQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC + L RNLT E+L Q+ + + G+ ++SNI Sbjct: 112 GCRMGCRFCASTLDGLARNLTPSEMLGQIYQIQKITGE-----------------RVSNI 154 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 V+MG GEPL N++N + + + SD GL S+R IT+ST G VPN+ R+ EE + LA+ Sbjct: 155 VIMGTGEPLDNYENFVRFIKLISDENGLHVSQRNITVSTCGIVPNMKRLAEEKFQITLAL 214 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH + + R L+P+ KY L+ +++AC +Y + RRITFEY +++G+ND DA Sbjct: 215 SLHGSTQEKRRELMPVANKYELKEVLEACDNYFDRT-GRRITFEYSLVQGVNDREEDAGE 273 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 LI ILK +NLIP NP + +++ F +++SG + IR G DI A Sbjct: 274 LISILKPRNCHLNLIPVNPIKERNFEKPTRQNAEKFKNKLEKSGINVTIRREMGSDIDGA 333 Query: 362 CGQLK 366 CGQL+ Sbjct: 334 CGQLR 338 >gi|188528191|ref|YP_001910878.1| hypothetical protein HPSH_07275 [Helicobacter pylori Shi470] gi|205829774|sp|B2UVG6|RLMN_HELPS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|188144431|gb|ACD48848.1| hypothetical protein HPSH_07275 [Helicobacter pylori Shi470] Length = 357 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 132/354 (37%), Positives = 197/354 (55%), Gaps = 31/354 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R Q++ W+Y + F+ M ++ S++ L Q F++ EI + S DG++K+L + Sbjct: 21 FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKYLFK 80 Query: 92 -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141 F A + ++ ET I E + T+CVS Q+GC + C+FC+T VRN Sbjct: 81 SLRDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCAFCFTQKGGFVRN 140 Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 L A EI+ Q LL + E +P K NIV MGMGEPL N D V K++ Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKALNIVFMGMGEPLNNLDEVCKAI 186 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260 I + G+ S +RIT+STSG I G+ +GV LAISLHAV + R+ L+P+N+K Sbjct: 187 EIFN--TGMQISPKRITISTSGVADEIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244 Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 Y +E +++ R +P L +R+ FEY+++K +NDS A L+K+L GI +K+NLI FNP Sbjct: 245 YNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303 Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372 G ++ + F++ + G IR + LDI AACGQL K LS++I Sbjct: 304 HEGSKFERPSLESARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQI 357 >gi|317181108|dbj|BAJ58894.1| hypothetical protein HPF32_1312 [Helicobacter pylori F32] Length = 357 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 133/354 (37%), Positives = 196/354 (55%), Gaps = 31/354 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R Q++ W+Y + F+ M ++ S++ L Q F++ EI + S DG++K+L + Sbjct: 21 FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKYLFK 80 Query: 92 -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141 F A + ++ ET I E + T+CVS Q+GC + CSFC+T VRN Sbjct: 81 SLRDNHTFEAVFLKMKDKKIDGETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGFVRN 140 Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 L A EI+ Q LL + E +P K NIV MGMGEPL N D V K++ Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKALNIVFMGMGEPLNNLDEVCKAI 186 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260 I + G+ S +RIT+STSG I G+ +GV LAISLHAV + R+ L+P+N+K Sbjct: 187 EIFN--TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244 Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 Y +E +++ R +P L +R+ FEY+++K +NDS A L+K+L GI +K+NLI FNP Sbjct: 245 YNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303 Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372 G + + F++ + G IR + LDI AACGQL K LS++I Sbjct: 304 HEGSNFERPSLESARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQI 357 >gi|157273452|gb|ABV27351.1| radical SAM enzyme Cfr family protein [Candidatus Chloracidobacterium thermophilum] Length = 363 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 135/369 (36%), Positives = 202/369 (54%), Gaps = 25/369 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + ++G +++ + + G+P R Q+++ ++ + + + +S + + VR L Sbjct: 10 NQDMLGQTCQQMCALMAERGLPA----YRGRQLFQALHRQLVETPEEISVLPRAVRTELA 65 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 S+ + S DGTR++L + + IETV+IP++ R TLC+SSQ GC Sbjct: 66 AEASLQPLSLAGIFESLDGTRRYLFK-----VHDGYSIETVWIPDRGRVTLCLSSQAGCP 120 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC T T L RNLTA EI+ QVL +L D + P N+V+M Sbjct: 121 MRCAFCATATLGLQRNLTAGEIVAQVLY---VLRD-----TVRQRQQPRPA--AVNLVLM 170 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLH 244 GMGEPL N+D+V +L + +D GL RR+TLST G VP I +G E LA+SL Sbjct: 171 GMGEPLLNYDHVLHALRVLADPEGLHIVPRRVTLSTVGIVPRIIALGREPDRPRLAVSLT 230 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +++LR L+P+N YPLE L +AC +P RITFEYV+L G+NDS A L++ Sbjct: 231 AATDELRARLMPVNLTYPLEALREACLAFPR-HPGERITFEYVLLDGVNDSEDQARALLR 289 Query: 305 ILKGI----PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L + AK+NLIP NP PG + + ++ F ++ G + +R PRG DI A Sbjct: 290 WLAPLRAQEAAKVNLIPHNPVPGIPFRPPKLERVLRFQALLRAKGLPTYLRRPRGQDISA 349 Query: 361 ACGQLKSLS 369 ACG L + S Sbjct: 350 ACGMLAATS 358 >gi|311068096|ref|YP_003973019.1| ribosomal RNA large subunit methyltransferase N [Bacillus atrophaeus 1942] gi|310868613|gb|ADP32088.1| ribosomal RNA large subunit methyltransferase N [Bacillus atrophaeus 1942] Length = 363 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 115/340 (33%), Positives = 191/340 (56%), Gaps = 21/340 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R +QI++W+Y + + F+ M+++S+ +R L+ HF + + ++ S DGT K+L Sbjct: 40 FRAAQIFEWLYEKRVSSFEDMTNLSKSLREKLSSHFVLTTLKTAVKQTSQDGTMKFLFE- 98 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + IETV + + ++CV++QVGC + C+FC + L RNL A EI+ QV+ Sbjct: 99 ----LHDGYTIETVLMRHEYGNSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVAQVV 154 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 + L + ++S++V+MG+GEP NF+ + L I + GL+ Sbjct: 155 KVQKALDE--------------TDERVSSVVIMGIGEPFDNFNEMLAFLKIINHDKGLNI 200 Query: 213 SKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 R IT+STSG +P I +++ + AISLHA + ++R+ L+PIN+ Y L L++A + Sbjct: 201 GARHITVSTSGIIPKIYDFADQQMQINFAISLHAPNTEIRSRLMPINKAYKLPELMEAVK 260 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 +Y RRI+FEY + G+ND A L +LKG+ +NLIP N P +Y+ + + Sbjct: 261 YYIE-KTGRRISFEYGLFGGVNDQVEHAEELAALLKGVKCHVNLIPVNYVPERDYVRTPK 319 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 I F + +K G + IR +G DI AACGQL++ ++ Sbjct: 320 DQIFAFEKTLKSHGVNVTIRREQGHDIDAACGQLRAKERQ 359 >gi|150006853|ref|YP_001301596.1| ribosomal RNA large subunit methyltransferase N [Parabacteroides distasonis ATCC 8503] gi|205829794|sp|A6L8G0|RLMN_PARD8 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|149935277|gb|ABR41974.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503] Length = 343 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 136/366 (37%), Positives = 188/366 (51%), Gaps = 33/366 (9%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K L+GM EEL+ ++G+P + Q+ WIY + I M++I+ R L Sbjct: 2 VDKRQLLGMTLEELKGVASEVGLPAYAAK----QMADWIYKKKITRISEMTNIAVAKRAL 57 Query: 64 LNQHFSI-IYPEIVDEKISCDGTRKWLLRFPARCIGGPVE-IETVYIPEKSRGTLCVSSQ 121 L F I YP +K S DGT K+L GP +E+VYIP R TLCVSSQ Sbjct: 58 LEDSFEIGAYPPSEYQK-SKDGTIKYLY------AAGPGRFVESVYIPTDDRATLCVSSQ 110 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC + C FC TG Q NLTA +IL Q+ +P ++N Sbjct: 111 VGCKMNCLFCMTGKQGFTANLTANQILNQI------------------QSLPE-NDSLTN 151 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 IV MGMGEPL N D + K L I + G ++S +RIT+ST G + R EE LA+ Sbjct: 152 IVFMGMGEPLDNVDELFKVLEILTAPYGYAWSPKRITVSTIGVTKGLKRFLEESECHLAV 211 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH+ R L+P+ + +P +ID + Y S+ RR++FEY++ K +NDS + A Sbjct: 212 SLHSPYPMERLSLMPVEKAFPAREVIDLIKQY-DFSHQRRVSFEYIVFKNLNDSLKHAEA 270 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L +L GIP ++NLI F+ P SD + F + + G IR RG DI AA Sbjct: 271 LSCLLGGIPCRVNLIRFHAIPNVSLETSDIAKMEAFRDFLNAKGVVCTIRASRGEDIFAA 330 Query: 362 CGQLKS 367 CG L + Sbjct: 331 CGMLST 336 >gi|332674192|gb|AEE71009.1| cfr family radical SAM enzyme [Helicobacter pylori 83] Length = 357 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 132/354 (37%), Positives = 197/354 (55%), Gaps = 31/354 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R Q++ W+Y + F+ M ++ S++ L Q F++ EI + S DG++K+L + Sbjct: 21 FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKYLFK 80 Query: 92 -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141 F A + ++ ET I E + T+CVS Q+GC + CSFC+T VRN Sbjct: 81 SLRDNHTFEAVFLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGFVRN 140 Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 L A EI+ Q LL + E +P K NIV MGMGEPL N D V K++ Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKALNIVFMGMGEPLNNLDEVCKAI 186 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260 I + G+ S +RIT+STSG I G+ +GV LAISLHAV + R+ L+P+N+K Sbjct: 187 EIFN--AGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244 Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 Y +E +++ + +P L +R+ FEY+++K +NDS A L+K+L GI +K+NLI FNP Sbjct: 245 YNIECVLNEVKKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303 Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372 G ++ + F++ + G IR + LDI AACGQL K LS++I Sbjct: 304 HEGSKFERPSLESARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQI 357 >gi|113476505|ref|YP_722566.1| radical SAM protein [Trichodesmium erythraeum IMS101] gi|123056519|sp|Q110I1|RLMN_TRIEI RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|110167553|gb|ABG52093.1| radical SAM enzyme, Cfr family [Trichodesmium erythraeum IMS101] Length = 345 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 134/360 (37%), Positives = 195/360 (54%), Gaps = 31/360 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+G+ +L E + + G P R Q+++WIY +G + ++ S++ R ++ +F Sbjct: 13 LLGLSLAKLTEWVQQQGQPA----YRGKQLYQWIYQKGAKSLADITVFSKQWREEIS-NF 67 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 I I ++ D T K+LL+ I IETV IP R T+CVSSQVGC + C Sbjct: 68 PIGRSVIHHRSVAPDATVKYLLKLSDGNI-----IETVGIPTYKRLTVCVSSQVGCPMAC 122 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG RNL A EI+ QVL + ED E R++S+IV MGMG Sbjct: 123 DFCATGKGGFSRNLEAHEIIDQVLTVQ---------EDFE--------RRVSHIVFMGMG 165 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVS 247 EPL N NV ++ + +G+ +R IT+STSG I ++ + ++ V LA+SLHA + Sbjct: 166 EPLLNTKNVLAAVRSLNQDLGIG--QRLITISTSGIRDRIRQLAQHKLQVTLAVSLHASN 223 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 LR L+P + YPL LI CR Y ++ RRI+FEY++L ND P A L K ++ Sbjct: 224 QRLREHLIPSAKFYPLADLISECREYVKITK-RRISFEYILLASFNDLPDHARELAKNMR 282 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 G +NLIP+NP +Y Q+ I TF+ + + IR RGL+ AACGQL++ Sbjct: 283 GFQCHVNLIPYNPISEVDYQRPTQEMIKTFANALAEQNIAVSIRYSRGLEANAACGQLRA 342 >gi|323699795|ref|ZP_08111707.1| radical SAM enzyme, Cfr family [Desulfovibrio sp. ND132] gi|323459727|gb|EGB15592.1| radical SAM enzyme, Cfr family [Desulfovibrio desulfuricans ND132] Length = 348 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 134/366 (36%), Positives = 197/366 (53%), Gaps = 30/366 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 L K L + E+L+E R R QIW+W++ + +RD + M+++S+ +R Sbjct: 7 LNKTDLEAFVAEDLKEP-----------RYRAEQIWQWLWQKRVRDVEAMTNLSRPLREK 55 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +I++PEI S DGT K+LL+ + G + IETV IP + R + C+S+QVG Sbjct: 56 LAGMANIVWPEIARVAESRDGTIKFLLKL----VDGKL-IETVLIPMQDRYSQCLSTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC TG RNLT EI+ Q+L+ R L D E + N+V Sbjct: 111 CAMACTFCNTGKLGFERNLTYGEIMGQILVGRQYLADRNMNE-------------LKNLV 157 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MGMGEPL N + + + L+ GLS S RR +ST GF + +G+ + AISL Sbjct: 158 FMGMGEPLLNLETLVRVLTDLPCERGLSLSWRRSMVSTVGFPDKLKILGDLEIALPAISL 217 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA + +LR ++P + L+ L+ A YP + RITFEY++LK +NDS A L Sbjct: 218 HAPTQELRARIMPKAARVHLDDLMAALSAYP-MRPRERITFEYLLLKDVNDSMEHADQLA 276 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K++ KINLI +N G Y D+ + F + + G ++ IR G DI AACG Sbjct: 277 KLIDRRKGKINLIAYNATEGMPYGAPDRDRVEAFEKRLWDHGLTAFIRRSMGADIKAACG 336 Query: 364 QLKSLS 369 QLK+ S Sbjct: 337 QLKADS 342 >gi|317182630|dbj|BAJ60414.1| hypothetical protein HPF57_1340 [Helicobacter pylori F57] Length = 357 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 129/346 (37%), Positives = 192/346 (55%), Gaps = 29/346 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R Q++ W+Y + F+ M ++ S++ L Q F++ EI + S DG++K+L + Sbjct: 21 FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRQSVDGSKKYLFK 80 Query: 92 -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141 F A + ++ ET I E + T+CVS Q+GC + CSFC+T VRN Sbjct: 81 SLRDNHTFEAVFLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGFVRN 140 Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 L A EI+ Q LL + E +P K NIV MGMGEPL N D V K++ Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKALNIVFMGMGEPLNNLDEVCKAI 186 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260 I + G+ S +RIT+STSG I G+ +GV LAISLHAV + R+ L+P+N+K Sbjct: 187 EIFN--AGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244 Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 Y +E +++ R +P L +R+ FEY+++K +NDS A L+K+L GI +K+NLI FNP Sbjct: 245 YNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303 Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 G ++ + F++ + G IR + LDI AACGQL+ Sbjct: 304 HEGSKFERPSLESARMFADFLNSKGLLCTIRESKALDIEAACGQLR 349 >gi|108760323|ref|YP_629532.1| radical SAM protein [Myxococcus xanthus DK 1622] gi|123374780|sp|Q1DCU1|RLMN1_MYXXD RecName: Full=Ribosomal RNA large subunit methyltransferase N 1; AltName: Full=23S rRNA m2A2503 methyltransferase 1 gi|108464203|gb|ABF89388.1| radical SAM enzyme, Cfr family [Myxococcus xanthus DK 1622] Length = 359 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 122/337 (36%), Positives = 183/337 (54%), Gaps = 22/337 (6%) Query: 37 QIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPAR 95 Q+W +Y R F + + E+ +L +H + E S DG T K LLR Sbjct: 33 QLWTALYRRHATTFDELDGLKPELLRMLREHTRLGQLATHHESFSSDGFTHKLLLR---- 88 Query: 96 CIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR 155 + IETV + K R T+C+S+Q GC++ C FC TG L R+LT EI+ Q+L Sbjct: 89 -LDDGQTIETVLMRFKGRATVCISTQAGCAMGCVFCATGQMGLSRHLTPGEIVGQILHVN 147 Query: 156 SLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR 215 +L + G + N+V+MGMGEPL N+++ ++ + D++GL+ R Sbjct: 148 RIL--------------RASGETLRNVVLMGMGEPLHNYEHTMSAVDVLVDALGLAMGPR 193 Query: 216 RITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274 ITLST G VP I R+ EE + LA+SLH ++ R LVP R++PL+ L+DACR+Y Sbjct: 194 FITLSTVGVVPGIRRLADEERPIHLAVSLHGATDAERAALVPAGRRWPLDELMDACRYYS 253 Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDI 334 RRI FE+ ++ G ND+ A L ++L+G+ A +N+IP NP G + S + + Sbjct: 254 E-KRKRRIFFEWTLISGRNDTAEHAHTLGQLLRGMDAHVNVIPLNPTVGYDGGPSRPESV 312 Query: 335 VTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 F + + S +R RG+DI A CGQLK+ +R Sbjct: 313 RAFQDVLATYDVPSTVRQRRGIDIDAGCGQLKATVER 349 >gi|288573974|ref|ZP_06392331.1| radical SAM enzyme, Cfr family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569715|gb|EFC91272.1| radical SAM enzyme, Cfr family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 341 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 128/334 (38%), Positives = 182/334 (54%), Gaps = 25/334 (7%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93 R Q+ +WIY + + D M+++S+++R L H + P VD + S DGT K+L RF Sbjct: 28 RADQLCQWIYGKKVFDIHRMTNLSKDLRSKLEGHLYVQPPFAVDVQKSSDGTVKFLWRF- 86 Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153 + G E+E+V + + T C+S+QVGC L C FC TG Q VRNLT EI+ L Sbjct: 87 ---LDGQ-EVESVLMDHGNHHTACLSTQVGCPLRCDFCATGRQGFVRNLTVGEIVGHFLA 142 Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213 S LG + I NIV MGMGEPL N++NVKK++ I + Sbjct: 143 MESWLG-----------------QDIKNIVFMGMGEPLLNWENVKKAIEILNHPKMRGMG 185 Query: 214 KRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 RRIT+STSG VP I + + + V L+ SLHA ++ +R+ L+P+N +YPL +++A + Sbjct: 186 IRRITISTSGVVPGILALADSGLDVRLSFSLHAPNDQIRSKLMPVNERYPLGQVVEALQE 245 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 + RIT EYV+LK IND P A + +L + INLIP+NP Y Sbjct: 246 FQK-KTGNRITVEYVLLKRINDEPSMAYEIAALLSDLDVYINLIPYNPVVE-RYGRPSAS 303 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 I F ++ G +R +G DI AACGQL+ Sbjct: 304 RINPFMATLRELGLEVELRKEKGTDIDAACGQLR 337 >gi|218438587|ref|YP_002376916.1| ribosomal RNA large subunit methyltransferase N [Cyanothece sp. PCC 7424] gi|218171315|gb|ACK70048.1| radical SAM enzyme, Cfr family [Cyanothece sp. PCC 7424] Length = 355 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 129/362 (35%), Positives = 196/362 (54%), Gaps = 31/362 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 +E L+G +L + + K G P R Q+ +WIY +G+R +S + R L Sbjct: 15 QEVLLGKSLPQLTQWVQKQGQPS----YRGKQLHQWIYEKGVRSLNEISVFPKSWREDL- 69 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + I +I I+ D TRK+LLR I IETV IP + R T+CVSSQVGC Sbjct: 70 KDYPIGRSDIHYRSIAPDKTRKYLLRLEDGLI-----IETVGIPTEKRLTVCVSSQVGCP 124 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG RNLTA EI+ QVL + ED + R++S++V M Sbjct: 125 MDCDFCATGKGGFTRNLTASEIVDQVLTVQ---------EDFQ--------RRVSHVVFM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244 GMGEPL N V ++ ++ +G+ R +T+ST G I ++ + ++ + LA+SLH Sbjct: 168 GMGEPLLNLKEVVPAVRTLNEDVGIGM--RSLTISTVGLPSKIEKLAQHQLQLTLAVSLH 225 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A + LR L+P ++YPL+ L+D C Y ++ RR+TFEY++L +ND P A L Sbjct: 226 APNQKLREQLIPSAKRYPLKYLLDNCHKYVEMTK-RRVTFEYILLADVNDLPHHAQELAT 284 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 ++G + +NLIP+NP +Y + + I F + ++ + +R RGL AACGQ Sbjct: 285 QIRGFQSHVNLIPYNPISEADYQRPNGERINAFMKILQEEKIAVSVRYSRGLQADAACGQ 344 Query: 365 LK 366 L+ Sbjct: 345 LR 346 >gi|149176961|ref|ZP_01855570.1| hypothetical protein PM8797T_07067 [Planctomyces maris DSM 8797] gi|148844216|gb|EDL58570.1| hypothetical protein PM8797T_07067 [Planctomyces maris DSM 8797] Length = 368 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 124/360 (34%), Positives = 192/360 (53%), Gaps = 22/360 (6%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L+ ++ + + L + I R QI +WI+ + + DF M DIS++ R LL ++ Sbjct: 17 ALLPLITDLTRDQLAQWCIEHESSSYRADQIRRWIFTKRVNDFDAMHDISKKFRDLLKEN 76 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F + IV + S D T K LL + +E V + E R T+C+S+QVGC++ Sbjct: 77 FRLFSTRIVKHQTSKDRTEKLLL-----ALHDGHHVECVLMREPKRNTVCISTQVGCAMG 131 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC +G L RNLT EIL Q+L ++G+ +ISNIV+MG+ Sbjct: 132 CVFCASGLLGLTRNLTMGEILEQILRLDRIIGE---------------EERISNIVVMGI 176 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAV 246 GEPL N + +L + G+ R+IT+ST G I + + +LA+SLHA Sbjct: 177 GEPLANLSALIPALDTLNHKGGMGIGARKITVSTVGLPVKIRELADVNKSYILAVSLHAP 236 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ LR+ +VP N K ++ ++DA +Y ++ RR+TFEY++L G+NDSP A L +L Sbjct: 237 NDTLRDQIVPTNNKIGIQKILDATDYYY-VTTGRRVTFEYILLAGVNDSPAHAHELACLL 295 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 K A +NLIP N Y +D+ F + + G + +R +G DI AACGQL+ Sbjct: 296 KHRNAHVNLIPANGVEETGYKTPTTEDVDRFFMTLAKGGVNVTVRKRKGDDIDAACGQLR 355 >gi|67921029|ref|ZP_00514548.1| Conserved hypothetical protein 48 [Crocosphaera watsonii WH 8501] gi|67857146|gb|EAM52386.1| Conserved hypothetical protein 48 [Crocosphaera watsonii WH 8501] Length = 341 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 130/367 (35%), Positives = 198/367 (53%), Gaps = 31/367 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 L +E+L+G +EL + + G P R Q+ +W+Y +G+R +S + R Sbjct: 3 LTQETLLGKSVDELTTWIKQQGQPG----YRGKQLHQWLYQKGVRSLTEISVFPKAFRED 58 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + + I I I+ D TRK+LL I IETV IP R T+CVSSQVG Sbjct: 59 F-KDYPIGRSNINHCTIAPDKTRKYLLSLADGLI-----IETVGIPTAKRLTVCVSSQVG 112 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG + RNL++ EI+ Q+L + ED + ++S++V Sbjct: 113 CPMNCDFCATGKGEYDRNLSSAEIVDQILTVQ---------EDFQ--------ERVSHVV 155 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242 MGMGEPL N V K++ I + +G+ +R +T+ST G I + ++ V A+S Sbjct: 156 FMGMGEPLLNTKEVVKAVKILNQDVGIG--QRSLTISTVGIPKKILELAHHQLQVTFAVS 213 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA + LR L+P + YPL L+ CR Y ++ RR++FEY++L G+ND P A+ L Sbjct: 214 LHAANQKLREQLIPSAKFYPLPKLLADCRKYVEIT-GRRVSFEYILLGGVNDLPEQAIEL 272 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K LKG + +NLIP+NP +Y S+ + I F ++ + +R RGL+ AAC Sbjct: 273 AKCLKGFQSHVNLIPYNPIEEVDYQRSNAESINIFKTILEEKNIAVSVRYSRGLEANAAC 332 Query: 363 GQLKSLS 369 GQL+++S Sbjct: 333 GQLRAMS 339 >gi|229918582|ref|YP_002887228.1| ribosomal RNA large subunit methyltransferase N [Exiguobacterium sp. AT1b] gi|229470011|gb|ACQ71783.1| radical SAM enzyme, Cfr family [Exiguobacterium sp. AT1b] Length = 361 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 127/363 (34%), Positives = 198/363 (54%), Gaps = 25/363 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SL + ELE +++ G R Q++ W+YV+ + F M+++ + +R L Sbjct: 15 KPSLYSLTFPELEAWVIEAG----EKAFRAKQLYDWMYVKRVTTFDDMTNVPKALRDKLE 70 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + ++ S DGT K+L + IETV + + ++CV++QVGC Sbjct: 71 ASFQLTTLKELVKQESQDGTIKFLFE-----LQDGYSIETVLMRHEYGNSICVTTQVGCR 125 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC + L RNL A EI QVL D++ + + G ++ +IV+M Sbjct: 126 IGCTFCASTLGGLKRNLEAGEITAQVL-------------DVQ-RALDATGERVDSIVVM 171 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+D + + L + GL+ R IT+STSG VP I + +E + + AISLH Sbjct: 172 GIGEPFDNYDELMRFLRTVNHDNGLNIGARHITVSTSGIVPKIYKFADEGMRINFAISLH 231 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A + +LR L+PINR + L+ L+DA R+Y S RRITFEY + G+ND+ A L Sbjct: 232 APTTELRTKLMPINRAFDLDKLMDAVRYYTEKS-GRRITFEYGLFGGVNDTEEYAHLLAD 290 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGI +NLIP N +Y+ + + I F + +K + IR +G DI AACGQ Sbjct: 291 LLKGIKCHVNLIPVNHVLERDYVRTPRAQIFAFEKVLKDRNVNVTIRREQGSDIDAACGQ 350 Query: 365 LKS 367 L++ Sbjct: 351 LRA 353 >gi|115379954|ref|ZP_01467009.1| radical SAM enzyme, Cfr family [Stigmatella aurantiaca DW4/3-1] gi|115363034|gb|EAU62214.1| radical SAM enzyme, Cfr family [Stigmatella aurantiaca DW4/3-1] Length = 384 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 134/367 (36%), Positives = 192/367 (52%), Gaps = 27/367 (7%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQ-EVRHLLNQ 66 SL + R L + L + G H +W+ +Y R ++ + + + E+ L + Sbjct: 35 SLHDLSRAALGQRLAEWGYSAFH----RDALWEALYRRHVKSLDELEGLVRPELVTRLRE 90 Query: 67 HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 H + P + E S DG T K LLR IETV + K R T+CVS+Q GC+ Sbjct: 91 HTCLRSPTVHHETFSSDGHTHKLLLR-----QHDGQTIETVLMRFKGRATVCVSTQAGCA 145 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG L R+L+ EI+ QVL LL G + NIV+M Sbjct: 146 MGCVFCATGQMGLARHLSPGEIVAQVLHVVGLLR--------------QTGETLRNIVLM 191 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244 GMGEPL N+D +++ I D GL+ R ITLST G VP I R+ +E V LA+SLH Sbjct: 192 GMGEPLHNYDATLEAVDILVDPRGLAIGPRFITLSTVGVVPGIRRLADEDRPVQLAVSLH 251 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 ++ R LVP+ +++PL L+DACR+Y RRI FE+ ++ G ND+ A L + Sbjct: 252 GATDAERAALVPVGKRWPLNELMDACRYY-SEKRGRRIFFEWTLIAGQNDTVDQAHTLGQ 310 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKG+ A +N+IP NP G S + + F + + G S +R RG+DI A CGQ Sbjct: 311 LLKGMEAHVNVIPLNPTVGFGGTPSTPEAVRAFQQVLTSYGLPSTVRQRRGIDIDAGCGQ 370 Query: 365 LKSLSKR 371 LK+ +R Sbjct: 371 LKAAVER 377 >gi|310819181|ref|YP_003951539.1| ribosomal RNA large subunit methyltransferase n [Stigmatella aurantiaca DW4/3-1] gi|309392253|gb|ADO69712.1| Ribosomal RNA large subunit methyltransferase N [Stigmatella aurantiaca DW4/3-1] Length = 360 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 134/367 (36%), Positives = 192/367 (52%), Gaps = 27/367 (7%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQ-EVRHLLNQ 66 SL + R L + L + G H +W+ +Y R ++ + + + E+ L + Sbjct: 11 SLHDLSRAALGQRLAEWGYSAFH----RDALWEALYRRHVKSLDELEGLVRPELVTRLRE 66 Query: 67 HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 H + P + E S DG T K LLR IETV + K R T+CVS+Q GC+ Sbjct: 67 HTCLRSPTVHHETFSSDGHTHKLLLR-----QHDGQTIETVLMRFKGRATVCVSTQAGCA 121 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG L R+L+ EI+ QVL LL G + NIV+M Sbjct: 122 MGCVFCATGQMGLARHLSPGEIVAQVLHVVGLL--------------RQTGETLRNIVLM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244 GMGEPL N+D +++ I D GL+ R ITLST G VP I R+ +E V LA+SLH Sbjct: 168 GMGEPLHNYDATLEAVDILVDPRGLAIGPRFITLSTVGVVPGIRRLADEDRPVQLAVSLH 227 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 ++ R LVP+ +++PL L+DACR+Y RRI FE+ ++ G ND+ A L + Sbjct: 228 GATDAERAALVPVGKRWPLNELMDACRYY-SEKRGRRIFFEWTLIAGQNDTVDQAHTLGQ 286 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKG+ A +N+IP NP G S + + F + + G S +R RG+DI A CGQ Sbjct: 287 LLKGMEAHVNVIPLNPTVGFGGTPSTPEAVRAFQQVLTSYGLPSTVRQRRGIDIDAGCGQ 346 Query: 365 LKSLSKR 371 LK+ +R Sbjct: 347 LKAAVER 353 >gi|323487018|ref|ZP_08092330.1| hypothetical protein HMPREF9474_04081 [Clostridium symbiosum WAL-14163] gi|323692060|ref|ZP_08106307.1| radical SAM enzyme [Clostridium symbiosum WAL-14673] gi|323399666|gb|EGA92052.1| hypothetical protein HMPREF9474_04081 [Clostridium symbiosum WAL-14163] gi|323503860|gb|EGB19675.1| radical SAM enzyme [Clostridium symbiosum WAL-14673] Length = 350 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 124/367 (33%), Positives = 209/367 (56%), Gaps = 33/367 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K + + EEL++ L +G R Q+++W++ + F M+++S+++R Sbjct: 1 MNKTDIKSLTHEELQDLLKGMG----EKPFRAGQLYRWMHEKLAASFDEMTNLSKDLRGK 56 Query: 64 LNQH--FSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 L ++ F+ + P V +IS D TRK+L G V IE+V + K ++C+SS Sbjct: 57 LAENCTFTALKPVCV--RISQIDDTRKYLFELE----DGNV-IESVLMKYKHGNSVCISS 109 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC + C FC + L RNLT E+L Q+ + G ++S Sbjct: 110 QVGCRMGCRFCASTLDGLERNLTPSEMLDQIY-----------------RIQRDTGERVS 152 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239 N+V+MG GEPL N+DN+ + + + + GL+ S+R +T+ST G VP I ++ EE + + L Sbjct: 153 NVVVMGSGEPLDNYDNLIRFIRLLTGEGGLNISQRNVTVSTCGIVPGIRKLAEEDLQITL 212 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA ++++R L+P+ ++Y L ++DACR+Y RR+TFEY +++G+ND+ +A Sbjct: 213 ALSLHAPNDEVRRTLMPVAKRYGLNEVMDACRYYFE-KTGRRLTFEYSLVQGVNDNLDEA 271 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L++++K +NLIP NP EY+ S ++ I F +++SG + +R G DI Sbjct: 272 KALVRLIKDQHGHVNLIPVNPIKEREYVQSGRQAIEAFKNQLEKSGINVTVRREMGRDID 331 Query: 360 AACGQLK 366 ACGQL+ Sbjct: 332 GACGQLR 338 >gi|317178131|dbj|BAJ55920.1| hypothetical protein HPF16_1323 [Helicobacter pylori F16] Length = 357 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 131/354 (37%), Positives = 197/354 (55%), Gaps = 31/354 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R Q++ W+Y + F+ M ++ S++ L Q F++ EI + S DG++K+L + Sbjct: 21 FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKYLFK 80 Query: 92 -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141 F A + ++ ET I E + T+CVS Q+GC + C+FC+T +RN Sbjct: 81 SLRDNHTFEAVFLKMRDKKIDGETNAILEGEKYTVCVSCQIGCQVGCAFCFTQKGGFIRN 140 Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 L A EI+ Q LL + E +P K NIV MGMGEPL N D V K++ Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKALNIVFMGMGEPLNNLDEVCKAI 186 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260 I + G+ S +RIT+STSG I G+ +GV LAISLHAV + R+ L+P+N+K Sbjct: 187 EIFN--AGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLIPLNKK 244 Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 Y +E +++ R +P L +R+ FEY+++K +NDS A L+K+L GI +K+NLI FNP Sbjct: 245 YNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303 Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372 G ++ + F++ + G IR + LDI AACGQL K LS++I Sbjct: 304 HEGSKFERPSLESARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQI 357 >gi|269926508|ref|YP_003323131.1| radical SAM enzyme, Cfr family [Thermobaculum terrenum ATCC BAA-798] gi|269790168|gb|ACZ42309.1| radical SAM enzyme, Cfr family [Thermobaculum terrenum ATCC BAA-798] Length = 371 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 135/370 (36%), Positives = 204/370 (55%), Gaps = 31/370 (8%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 N +SL+ + +EL E + P+ R Q+W+ IY + D + M+ + + +R Sbjct: 14 NHKPAKSLLDLSLQELREWIRLRDYPE----YRAVQVWQAIYRQLEVDPEKMTSLPKALR 69 Query: 62 HLLNQHFSIIYPEIVDEK-ISCDG--TRKWLLRFPARCIGGPVEIETVYIPE-KSRGTLC 117 +L+ F +P I + DG T K L + + IE+V + R T+C Sbjct: 70 EVLSAEFP--FPNITPVRTFVADGGDTEKVLFQ-----LEDGNAIESVLMEYMDGRATVC 122 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 VSSQ GC++ C+FC TG RNL+A EI+ Q+L L D G+ Sbjct: 123 VSSQAGCAIGCTFCATGLGGFYRNLSAGEIVYQILYFSKKLRD--------------KGK 168 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIG 236 +++NIV MGMGEPL N D V +S+ + G++FS RRIT+ST+G V I R ++ Sbjct: 169 RLTNIVYMGMGEPLANLDAVWRSVENLHEPTGMNFSARRITISTAGLVHQIDRFPPTDLQ 228 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 V LAISLHA ++DLR ++PINR++P+ LI + + Y ++ RRITFEYV++ G N S Sbjct: 229 VNLAISLHAPNDDLRTSIMPINRRWPISELIASAKRYVERTH-RRITFEYVLIAGCNSSK 287 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 A +L +L+G+ +NLIP N PG + +++ TF + + +G +R RG Sbjct: 288 EHARDLSNLLRGLLCHVNLIPLNRVPGSPFEPPSTEEVNTFRDILLSAGIPCTVRLERGA 347 Query: 357 DILAACGQLK 366 DILAACGQL+ Sbjct: 348 DILAACGQLR 357 >gi|317179603|dbj|BAJ57391.1| hypothetical protein HPF30_1294 [Helicobacter pylori F30] Length = 357 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 132/354 (37%), Positives = 197/354 (55%), Gaps = 31/354 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R Q++ W+Y + F+ M ++ S++ L Q F++ EI + S DG++K+L + Sbjct: 21 FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKYLFK 80 Query: 92 -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141 F A + ++ ET I E + T+CVS Q+GC + CSFC+T VRN Sbjct: 81 SLIDNHTFEAVFLKMKDKKIDGETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGFVRN 140 Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 L A EI+ Q LL + E +P K NIV MGMGEPL N D V K++ Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKALNIVFMGMGEPLNNLDEVCKAI 186 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260 I + G+ S +RIT+STSG I G+ +GV LAISLHAV + R+ L+P+N+K Sbjct: 187 EIFN--TGMQISPKRITISTSGVANKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244 Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 Y +E +++ + +P L +R+ FEY+++K +NDS A L+K+L GI +K+NLI FNP Sbjct: 245 YNIECVLNEVKKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303 Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372 G ++ + F++ + G IR + LDI AACGQL K LS++I Sbjct: 304 HEGSKFERPSLESARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQI 357 >gi|220905656|ref|YP_002480967.1| radical SAM enzyme, Cfr family [Cyanothece sp. PCC 7425] gi|219862267|gb|ACL42606.1| radical SAM enzyme, Cfr family [Cyanothece sp. PCC 7425] Length = 367 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 129/360 (35%), Positives = 196/360 (54%), Gaps = 31/360 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+G + EL E + +G P R Q+ +W+Y +G+R +S + R + + Sbjct: 29 LLGASQAELTEWITALGQPA----YRGQQLHQWLYQKGVRSLTEISVFPKAWRQQVAE-V 83 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 ++ ++ + DGT K+LLR I IETV IP R T+CVSSQVGC + C Sbjct: 84 AVGRSQLHYRSQAQDGTVKYLLRLDDGQI-----IETVGIPSNRRLTVCVSSQVGCPMGC 138 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG R+L EI+ QVL ++ DF G+++SN+V MGMG Sbjct: 139 DFCATGKGGFRRHLDRHEIVDQVLTVQA---DF--------------GQRVSNVVFMGMG 181 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVS 247 EPL N + V +++ + +G+ +R +T+ST G I R+ + LA+SLHA + Sbjct: 182 EPLLNLEAVLEAVRCLNQDVGIG--QRFLTISTVGIPGQIRRLANHHLQATLAVSLHASN 239 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 LR L+P R YPLE L+ CR Y L+ RR++FEY++L G+ND P+ AL L + L+ Sbjct: 240 QPLRAQLIPSARHYPLENLLQECRDYVQLT-GRRVSFEYILLGGLNDLPQHALELAQHLR 298 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 G + +NLIP+NP +Y + + F + ++ ++ IR RGLD AACGQL++ Sbjct: 299 GFQSHVNLIPYNPISEVDYQRPSPQRMQHFLQLLQEHHIAASIRRSRGLDQNAACGQLRA 358 >gi|323344170|ref|ZP_08084396.1| cfr family radical SAM enzyme [Prevotella oralis ATCC 33269] gi|323094899|gb|EFZ37474.1| cfr family radical SAM enzyme [Prevotella oralis ATCC 33269] Length = 346 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 126/363 (34%), Positives = 194/363 (53%), Gaps = 29/363 (7%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+GM EL+ ++ +P Q+ KW+Y + + M++IS+ R L + + Sbjct: 8 LLGMTLSELKTVAKELEMPA----FTGGQMAKWLYRQHVASIDDMTNISKSNREKLKKAY 63 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 ++ +DE+ S DGT K+L FP +ETVYIP++ R TLCVSSQVGC + C Sbjct: 64 TVGCASPIDEQHSNDGTIKYL--FPTE---QGKYVETVYIPDEERATLCVSSQVGCKMNC 118 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG Q NLTA +IL Q+ +P K++NIV MG G Sbjct: 119 LFCQTGKQGYEGNLTATDILNQIY------------------ALPERD-KLTNIVFMGQG 159 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN 248 EP+ N +NV ++ +I + ++S +RIT+S+ G + R EE +AISLH+ + Sbjct: 160 EPMDNLENVLRATNILTADYAYAWSPKRITVSSVGVRNKLKRFLEESDCHVAISLHSPIH 219 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 + R L+P P+ ++D R+Y S+ RR++FEY++ GIND+ A ++K+LKG Sbjct: 220 EQRAGLMPAEGGMPIREIVDLLRNYD-FSHQRRLSFEYIVFGGINDTQTHAKEIVKLLKG 278 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 + +INLI F+ P +D + + F + + G + IR RG DI AACG L + Sbjct: 279 LDCRINLIRFHQIPNVPLRGADDRTMEAFRDYLTAHGLFTTIRASRGEDIFAACGLLSTA 338 Query: 369 SKR 371 K Sbjct: 339 KKH 341 >gi|262384399|ref|ZP_06077534.1| cfr family radical SAM enzyme [Bacteroides sp. 2_1_33B] gi|301308675|ref|ZP_07214627.1| radical SAM enzyme, Cfr family [Bacteroides sp. 20_3] gi|262294102|gb|EEY82035.1| cfr family radical SAM enzyme [Bacteroides sp. 2_1_33B] gi|300833199|gb|EFK63817.1| radical SAM enzyme, Cfr family [Bacteroides sp. 20_3] Length = 343 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 136/366 (37%), Positives = 188/366 (51%), Gaps = 33/366 (9%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K L+GM EEL+ ++G+P + Q+ WIY + I M++I+ R L Sbjct: 2 VDKRQLLGMTLEELKGVASEVGLPAYAAK----QMADWIYKKKITRISEMTNIAVAKRAL 57 Query: 64 LNQHFSI-IYPEIVDEKISCDGTRKWLLRFPARCIGGPVE-IETVYIPEKSRGTLCVSSQ 121 L F I YP +K S DGT K+L GP +E+VYIP R TLCVSSQ Sbjct: 58 LEDSFEIGAYPPSEYQK-SKDGTIKYLYA------AGPGRFVESVYIPTDDRATLCVSSQ 110 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC + C FC TG Q NLTA +IL Q+ +P ++N Sbjct: 111 VGCKMNCLFCMTGKQGFTANLTANQILNQI------------------QSLPE-NDSLTN 151 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 IV MGMGEPL N D + K L I + G ++S +RIT+ST G + R EE LA+ Sbjct: 152 IVFMGMGEPLDNVDELFKVLEILTAPYGYAWSPKRITVSTIGVTKGLKRFLEESECHLAV 211 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH+ R L+P+ + +P +ID + Y S+ RR++FEY++ K +NDS + A Sbjct: 212 SLHSPYPMERLSLMPVEKAFPAREVIDLIKQY-DFSHQRRVSFEYIVFKNLNDSLKHAEA 270 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L +L GIP ++NLI F+ P SD + F + + G IR RG DI AA Sbjct: 271 LSCLLGGIPCRVNLIRFHAIPNVSLETSDIVKMEAFRDFLNAKGVVCTIRASRGEDIFAA 330 Query: 362 CGQLKS 367 CG L + Sbjct: 331 CGMLST 336 >gi|302345666|ref|YP_003814019.1| 23S rRNA m2A2503 methyltransferase [Prevotella melaninogenica ATCC 25845] gi|302149773|gb|ADK96035.1| 23S rRNA m2A2503 methyltransferase [Prevotella melaninogenica ATCC 25845] Length = 350 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 127/365 (34%), Positives = 195/365 (53%), Gaps = 29/365 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ L+GM EL+E +G+P QI KW+Y + ++ M++IS+ R L Sbjct: 5 KKYLLGMTLGELKEVAKSLGMPA----FTGGQIAKWLYTQHVKSIDEMTNISKANREKLA 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++I E +D + S DGT K+L FP G +ETVYIP++ R TLCVSSQVGC Sbjct: 61 AEYAIGCKEPIDAQHSKDGTIKYL--FPTD--SGKF-VETVYIPDEDRATLCVSSQVGCK 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q +L+A +IL Q+ +P K++NIV M Sbjct: 116 MNCLFCQTGKQGFEGSLSATDILNQIY------------------SLPERD-KLTNIVFM 156 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 G GEP+ N DNV ++ I + G +S +RIT+S+ G + R +E +AIS+H Sbjct: 157 GQGEPMDNLDNVLRTTEIMTADFGYGWSPKRITVSSVGVKGKLKRFLDESDCHVAISMHT 216 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ R+ L+P + ++ +I+ +Y S+ RR++FEY++ K NDS A ++++ Sbjct: 217 PLHEQRSELMPAEKGMSIDSIIELLSNYD-FSHQRRLSFEYIVFKDFNDSEEHAKAIVQL 275 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG+ ++NLI F+P P D + F + + G + IR RG DI AACG L Sbjct: 276 LKGLDCRMNLIRFHPIPNIPLQGVDDHRMEKFRNYLTQHGVFTTIRASRGQDIFAACGLL 335 Query: 366 KSLSK 370 + K Sbjct: 336 STAKK 340 >gi|16078638|ref|NP_389457.1| ribosomal RNA large subunit methyltransferase N [Bacillus subtilis subsp. subtilis str. 168] gi|221309450|ref|ZP_03591297.1| hypothetical protein Bsubs1_08696 [Bacillus subtilis subsp. subtilis str. 168] gi|221313775|ref|ZP_03595580.1| hypothetical protein BsubsN3_08632 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318699|ref|ZP_03599993.1| hypothetical protein BsubsJ_08566 [Bacillus subtilis subsp. subtilis str. JH642] gi|221322970|ref|ZP_03604264.1| hypothetical protein BsubsS_08672 [Bacillus subtilis subsp. subtilis str. SMY] gi|3287951|sp|O34617|RLMN_BACSU RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|2337804|emb|CAA74265.1| YloN protein [Bacillus subtilis subsp. subtilis str. 168] gi|2633947|emb|CAB13448.1| putative Fe-S-cluster AdoMet radical enzyme [Bacillus subtilis subsp. subtilis str. 168] Length = 363 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 115/340 (33%), Positives = 191/340 (56%), Gaps = 21/340 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R +QI++W+Y + + F+ M+++S+++R LN F + + ++ S DGT K+L Sbjct: 40 FRAAQIFEWLYEKRVSSFEDMTNLSKDLREKLNTRFVLTTLKTAVKQTSQDGTMKFLFE- 98 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + IETV + + ++CV++QVGC + C+FC + L RNL A EI+ QV+ Sbjct: 99 ----LHDGYTIETVLMRHEYGNSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVAQVV 154 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 + L + ++S++V+MG+GEP NF+ + L I + GL+ Sbjct: 155 KVQKALDE--------------TDERVSSVVIMGIGEPFDNFNEMLAFLKIINHDKGLNI 200 Query: 213 SKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 R IT+STSG +P I +++ + AISLHA + ++R+ L+PINR Y L L++A + Sbjct: 201 GARHITVSTSGIIPKIYEFADQQMQINFAISLHAPNTEIRSRLMPINRAYKLPDLMEAVK 260 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 +Y RRI+FEY + G+ND A L +L+G+ +NLIP N P +Y+ + + Sbjct: 261 YYIN-KTGRRISFEYGLFGGVNDQVEHAEELADLLEGVKCHVNLIPVNYVPERDYVRTPR 319 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 I F + +K G + IR +G DI AACGQL++ ++ Sbjct: 320 DQIFAFEKTLKSRGVNVTIRREQGHDIDAACGQLRAKERQ 359 >gi|308185186|ref|YP_003929319.1| ribosomal RNA large subunit methyltransferase N [Helicobacter pylori SJM180] gi|308061106|gb|ADO03002.1| ribosomal RNA large subunit methyltransferase N [Helicobacter pylori SJM180] Length = 357 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 132/354 (37%), Positives = 197/354 (55%), Gaps = 31/354 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R Q++ W+Y + F+ M ++ S++ L + F++ EI + S DG++K+L + Sbjct: 21 FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREFTLRTIEITHVRESVDGSKKYLFK 80 Query: 92 -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141 F A + ++ ET I E + T+CVS Q+GC + CSFC+T VRN Sbjct: 81 SLRDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGFVRN 140 Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 L A EI+ Q LL + E +P K NIV MGMGEPL N D V K++ Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKALNIVFMGMGEPLNNLDEVCKAI 186 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260 I + G+ S +RIT+STSG I G+ +GV LAISLHAV + R+ L+P+N+K Sbjct: 187 EIFN--TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244 Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 Y +E +++ R +P L +R+ FEY+++K +NDS A L+K+L GI +K+NLI FNP Sbjct: 245 YNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303 Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372 G ++ + F++ + G IR + LDI AACGQL K LS++I Sbjct: 304 HEGSKFERPSLESARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQI 357 >gi|325680303|ref|ZP_08159863.1| 23S rRNA m2A2503 methyltransferase [Ruminococcus albus 8] gi|324108012|gb|EGC02268.1| 23S rRNA m2A2503 methyltransferase [Ruminococcus albus 8] Length = 348 Score = 210 bits (534), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 128/361 (35%), Positives = 202/361 (55%), Gaps = 30/361 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 ++G+M EELEE +L IG + R QI++W++V+ + F M+++S ++R L + Sbjct: 11 DILGLMPEELEEQILLIG----EKKFRAKQIFEWLHVKRVDSFDKMTNLSVQLRDKLKKI 66 Query: 68 FSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 F + IV + + D T K+L R P +E+V + T+CVS+QVGC + Sbjct: 67 FCLKSLFIVKRLESNTDNTVKYLYRLP-----DGNHVESVIMEYNHGNTVCVSTQVGCKM 121 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC + R+L+A EILLQ+ A GRKI V+MG Sbjct: 122 GCKFCASTIAGYKRDLSASEILLQIYEAER-----------------DSGRKIGGAVLMG 164 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245 +GEPL N+DNV L + S G++ S R +++ST G VP I + E ++G+ L++SLHA Sbjct: 165 IGEPLDNYDNVVGFLKVLSCEAGMNMSLRHVSVSTCGLVPRIYELAELKLGITLSVSLHA 224 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +N R+ ++P+N +Y + L+ ACR+Y ++ RRI+FEY ++ G NDS A L + Sbjct: 225 TNNRARSEIMPVNNRYDIAELMAACRYYFKVT-GRRISFEYALIDGHNDSQAAAEELAAL 283 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G +N+IP N +Y SD+K + F + ++ G ++ +R G DI AACGQL Sbjct: 284 LRGFTCHVNIIPVNKIKERDYR-SDRKAAMRFQKRLEALGLNATVRRTLGADIDAACGQL 342 Query: 366 K 366 + Sbjct: 343 R 343 >gi|315585812|gb|ADU40193.1| Fe-S-cluster redox protein [Helicobacter pylori 35A] Length = 357 Score = 210 bits (534), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 132/354 (37%), Positives = 197/354 (55%), Gaps = 31/354 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R Q++ W+Y + F+ M ++ S++ L Q F++ EI + S DG++K+L + Sbjct: 21 FRAKQLYWWLYAKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRKSVDGSKKYLFK 80 Query: 92 -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141 F A + ++ +T I E + T+CVS Q+GC + CSFC+T VRN Sbjct: 81 SLRDNHTFEAVFLKMKDKKIDEKTNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGFVRN 140 Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 L A EI+ Q LL + E +P K NIV MGMGEPL N D V K++ Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKALNIVFMGMGEPLNNLDEVCKAI 186 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260 I + G+ S +RIT+STSG I G+ +GV LAISLHAV + R+ L+P+N+K Sbjct: 187 EIFN--AGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244 Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 Y +E +++ R +P L +R+ FEY+++K +NDS A L+K+L GI +K+NLI FNP Sbjct: 245 YNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303 Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372 G ++ + F++ + G IR + LDI AACGQL K LS++I Sbjct: 304 HEGSKFERPSLESARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQI 357 >gi|268611643|ref|ZP_06145370.1| radical SAM protein [Ruminococcus flavefaciens FD-1] Length = 352 Score = 210 bits (534), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 127/366 (34%), Positives = 202/366 (55%), Gaps = 32/366 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K ++ + ELE L ++G + R QI++W++V+ + DF M+DIS ++R + Sbjct: 1 MEKIDILSLSLTELENVLTELG----EKKFRAKQIFQWLHVKRVTDFDKMTDISVQLRTV 56 Query: 64 LNQHFSIIYPEIVDEKI-SC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L + F I V++K+ SC D T K+L R +ETV + ++CVS+Q Sbjct: 57 LKEKFCI-NGLFVEKKLESCMDNTVKYLYRLSDGNF-----VETVLMEYNYGHSICVSTQ 110 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC + C FC + VR+L EIL+Q+ G ++S Sbjct: 111 VGCKMGCRFCASAIAGYVRDLEPSEILMQIYETER-----------------DSGVRVSG 153 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLA 240 +V+MG+GEPL N+DNV + LS+ SD G + S R ++LST G VP I + + +GV L Sbjct: 154 VVLMGIGEPLDNYDNVVRFLSLLSDKNGNNMSLRHVSLSTCGIVPRIYDLAKLRLGVTLC 213 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLH N+ R+ ++P+N KY ++ LI AC+ Y + RRITFEY ++ G+N + DA Sbjct: 214 VSLHCPDNEGRSKIMPVNNKYDIDSLITACKDYID-ATGRRITFEYAVIDGVNSTDADAD 272 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L +L+GI +NLIP N Y + + + F++ + + G ++ +R G DI A Sbjct: 273 KLADLLRGINCHVNLIPVNKVKERNYRTA-RSGVADFAKRLGKRGINATVRRTLGSDIEA 331 Query: 361 ACGQLK 366 ACGQL+ Sbjct: 332 ACGQLR 337 >gi|308183521|ref|YP_003927648.1| ribosomal RNA large subunit methyltransferase N [Helicobacter pylori PeCan4] gi|308065706|gb|ADO07598.1| ribosomal RNA large subunit methyltransferase N [Helicobacter pylori PeCan4] Length = 357 Score = 210 bits (534), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 131/354 (37%), Positives = 197/354 (55%), Gaps = 31/354 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R Q++ W+Y + F+ M ++ S++ L Q F++ EI + S DG++K+L + Sbjct: 21 FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRKSVDGSKKYLFK 80 Query: 92 -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141 F A + ++ ET I E + T+CVS Q+GC + C+FC+T VRN Sbjct: 81 SLRDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCAFCFTQKGGFVRN 140 Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 L A EI+ Q LL + E +P K NIV MGMGEPL N D V K++ Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKALNIVFMGMGEPLNNLDEVCKAI 186 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260 I + G+ S +RIT+STSG I G+ +GV LAISLHAV + R+ L+P+N+K Sbjct: 187 EIFN--TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244 Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 Y +E +++ R +P L +R+ FEY+++K +ND+ A L+K+L GI +K+NLI FNP Sbjct: 245 YNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLNDNLDCAKKLLKLLNGIKSKVNLILFNP 303 Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372 G ++ + F++ + G IR + LDI AACGQL K LS++I Sbjct: 304 HEGSKFERPSLESARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQI 357 >gi|212695668|ref|ZP_03303796.1| hypothetical protein ANHYDRO_00185 [Anaerococcus hydrogenalis DSM 7454] gi|212677341|gb|EEB36948.1| hypothetical protein ANHYDRO_00185 [Anaerococcus hydrogenalis DSM 7454] Length = 343 Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 125/357 (35%), Positives = 196/357 (54%), Gaps = 34/357 (9%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 EELE+ L +G + R Q+++ I+V I DF M+D+S+++R L+++F + Sbjct: 13 EELEKIFLDLGFK----KFRAKQVFRQIHVNKINDFSKMTDLSKKMREDLDKYFYFPKIK 68 Query: 75 IVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133 +V E K + D T+K+L + I IE V++ +R T+C+SSQVGC + C FC + Sbjct: 69 VVKEFKSNLDKTKKYLFELDDKNI-----IEAVFMEYNNRNTICISSQVGCRMGCKFCAS 123 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 L R+L+A EI+ ++ L D ISNIV+MG+GEPL N Sbjct: 124 TKNGLERSLSASEIIEEIYLLERENSD------------------ISNIVVMGIGEPLDN 165 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI---ARVGEEIGVMLAISLHAVSNDL 250 F N++K + I +D G + S R IT+ST G V I A +G +I LA+SLH ++ Sbjct: 166 FSNIEKFIKIITDQKGRNLSHRSITVSTVGLVDKIYDLANLGYDIN--LAVSLHYAFDEK 223 Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310 R +P KY ++ +I AC +Y + RR+++EYV++ G+N+ D L K+ KG Sbjct: 224 RMAYMPSGNKYKIKDIIKACDYYLEKT-KRRVSYEYVVIDGVNNLREDIDQLEKLFKGKN 282 Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 INLIP NP +Y + + F + + + G ++ IR G DI A+CGQL++ Sbjct: 283 IHINLIPLNPIEEFKYSKTKNNVMDQFQQKLTKKGLNATIRRSMGSDIDASCGQLRN 339 >gi|297380586|gb|ADI35473.1| radical SAM enzyme, Cfr family [Helicobacter pylori v225d] Length = 357 Score = 209 bits (533), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 131/354 (37%), Positives = 197/354 (55%), Gaps = 31/354 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R Q++ W+Y + F+ M ++ S++ L Q F++ EI + S DG++K+L + Sbjct: 21 FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKYLFK 80 Query: 92 -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141 F A + ++ ET I E + T+CVS Q+GC + C+FC+T VRN Sbjct: 81 SLRDNHTFEAVLLKMKDKKIDGETNAILEGEKYTVCVSCQIGCQVGCAFCFTQKGGFVRN 140 Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 L A EI+ Q LL + E +P K NIV MGMGEPL N D V K++ Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKALNIVFMGMGEPLNNLDEVCKAI 186 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260 I + G+ S +RIT+STSG I G+ +GV LAISLHAV + R+ L+P+N+K Sbjct: 187 EIFN--AGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244 Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 Y +E +++ + +P L +R+ FEY+++K +NDS A L+K+L GI +K+NLI FNP Sbjct: 245 YNIECVLNEVKKWP-LEQHKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303 Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372 G ++ + F++ + G IR + LDI AACGQL K LS++I Sbjct: 304 HEGSKFERPSLESARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQI 357 >gi|254779939|ref|YP_003058046.1| ribosomal RNA large subunit methyltransferase N [Helicobacter pylori B38] gi|254001852|emb|CAX30102.1| Conserved hypothetical protein [Helicobacter pylori B38] Length = 357 Score = 209 bits (533), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 131/354 (37%), Positives = 197/354 (55%), Gaps = 31/354 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R Q++ W+Y + F+ M ++ S++ L + F++ EI + S DG++K+L + Sbjct: 21 FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREFTLRTIEITHVRESVDGSKKYLFK 80 Query: 92 -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141 F A + ++ ET I E + T+CVS Q+GC + C+FC+T VRN Sbjct: 81 SLRDNHTFEAVLLKMKDKKIDAETNAILEGEKYTVCVSCQIGCQVGCAFCFTQKGGFVRN 140 Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 L A EI+ Q LL + E +P K NIV MGMGEPL N D V K++ Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKALNIVFMGMGEPLNNLDEVCKAV 186 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260 I + G+ S +RIT+STSG I G+ +GV LAISLHAV + R+ L+P+N+K Sbjct: 187 EIFN--TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244 Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 Y +E +++ R +P L +R+ FEY+++K +NDS A L+K+L GI +K+NLI FNP Sbjct: 245 YNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303 Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372 G ++ + F++ + G IR + LDI AACGQL K LS++I Sbjct: 304 HEGSKFERPSLESARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQI 357 >gi|15612390|ref|NP_224043.1| ribosomal RNA large subunit methyltransferase N [Helicobacter pylori J99] gi|11387372|sp|Q9ZJI4|RLMN_HELPJ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|4155932|gb|AAD06899.1| putative [Helicobacter pylori J99] Length = 357 Score = 209 bits (533), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 130/354 (36%), Positives = 196/354 (55%), Gaps = 31/354 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R Q++ W+Y + F+ M ++ S++ L Q F++ EI + S DG++K+L + Sbjct: 21 FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEIAHVRESVDGSKKYLFK 80 Query: 92 -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141 F A + ++ ET + E + T+CVS Q+GC + CSFC+T VR+ Sbjct: 81 SLRDNHTFEAVLLKMKDKKIDEETNAVLEGEKYTVCVSCQIGCQVGCSFCFTQKGGFVRD 140 Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 L A EI+ Q LL + E +P K NIV MGMGEPL N D V K++ Sbjct: 141 LKASEIIQQALLIK------------EANNLPI--EKALNIVFMGMGEPLNNLDEVCKAV 186 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260 I + G+ S +RIT+STSG I G+ +GV LAISLHAV + R+ L+P+N+K Sbjct: 187 EIFN--TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244 Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 Y +E +++ R +P L +R+ FEY+++K +NDS A L+K+L GI +K+NLI FNP Sbjct: 245 YNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303 Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372 G ++ + F++ + G IR + LDI AACGQL K L ++I Sbjct: 304 HEGSKFERPSLESARMFADFLNAKGLLCTIRESKALDIEAACGQLREKKLQQKI 357 >gi|239618306|ref|YP_002941628.1| radical SAM enzyme, Cfr family [Kosmotoga olearia TBF 19.5.1] gi|239507137|gb|ACR80624.1| radical SAM enzyme, Cfr family [Kosmotoga olearia TBF 19.5.1] Length = 343 Score = 209 bits (533), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 131/362 (36%), Positives = 200/362 (55%), Gaps = 34/362 (9%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+ M +EL + L+ G + + R SQI+ WIY + + +F M+++ ++ R L+ F Sbjct: 3 LLEMTLDELRKVLVDEG----YEKYRASQIFDWIYKKKVLNFSNMTNLPKDFRKFLSGTF 58 Query: 69 SIIYPE--IVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 YPE IV +S DGT K+L + G IE+V + T C+S+QVGC Sbjct: 59 R--YPEMTIVRRSLSKIDGTEKFLWKLH----DGEF-IESVILRHPDHTTFCISTQVGCQ 111 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC TG RNL+ EI+ QV+ S+G+ ++NIV M Sbjct: 112 LGCIFCATGMSGFKRNLSVSEIVGQVIFMEK-----------------SMGKNVTNIVFM 154 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 GMGEP N DNV KS+ I + G + R T+ST+G I R+ + + V L++SLH Sbjct: 155 GMGEPFLNTDNVFKSIEILHEPAGRNLGIRHFTISTAGIPEGIIRLADSGMDVRLSLSLH 214 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +++ R++L+PIN++Y ++ L+ + +Y +N RRIT EY+++ GINDS DA L K Sbjct: 215 AATDEKRSMLMPINKRYNIQQLMASLEYYQRKTN-RRITIEYILIDGINDSIEDAKQLAK 273 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 + K + +N+I NP S +K + F+ +K+ G + IRT +G DI AACGQ Sbjct: 274 LFKHLKIFVNIIAINPVVPTLKRPSREK-VERFAIELKKHGIEAAIRTEKGSDIDAACGQ 332 Query: 365 LK 366 L+ Sbjct: 333 LR 334 >gi|108563778|ref|YP_628094.1| ribosomal RNA large subunit methyltransferase N [Helicobacter pylori HPAG1] gi|123246875|sp|Q1CRK2|RLMN_HELPH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|107837551|gb|ABF85420.1| hypothetical protein HPAG1_1353 [Helicobacter pylori HPAG1] Length = 357 Score = 209 bits (532), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 132/354 (37%), Positives = 197/354 (55%), Gaps = 31/354 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R Q++ W+Y + F+ M ++ S++ L + F++ EI + S DG++K+L + Sbjct: 21 FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREFTLRTIEITHVRKSVDGSKKYLFK 80 Query: 92 -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141 F A + ++ +T I E + T+CVS Q+GC + CSFC+T VRN Sbjct: 81 SLRDNHTFEAVLLKMKDKKIDEKTNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGFVRN 140 Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 L A EI+ Q LL + E +P K NIV MGMGEPL N D V K++ Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKALNIVFMGMGEPLNNLDEVCKAI 186 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260 I + G+ S RRIT+STSG I G+ +GV LAISLHAV + R+ L+P+N+K Sbjct: 187 EIFN--TGMQISPRRITVSTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244 Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 Y +E +++ R +P L +R+ FEY+++K +NDS A L+K+L GI +K+NLI FNP Sbjct: 245 YNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303 Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372 G ++ + F++ + G IR + LDI AACGQL K LS++I Sbjct: 304 HEGSKFERPSLESARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQI 357 >gi|289422335|ref|ZP_06424185.1| radical SAM enzyme, Cfr family [Peptostreptococcus anaerobius 653-L] gi|289157280|gb|EFD05895.1| radical SAM enzyme, Cfr family [Peptostreptococcus anaerobius 653-L] Length = 352 Score = 209 bits (532), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 130/361 (36%), Positives = 202/361 (55%), Gaps = 32/361 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L + EE+ E +L +G + R +Q++ W+Y + IRDF M ++ + +R L + Sbjct: 11 LKNLTEEEMVEFILSLG----EKKFRAAQVYSWVY-KNIRDFDEMKNVPKSLRDKLREK- 64 Query: 69 SIIYPEIVDEKISC--DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 SII ++ K+ D T+K+L I IETV + SR T+CVS+QVGC + Sbjct: 65 SIIGNLDIELKLESKIDNTKKYLFLLNDGNI-----IETVAMDYDSRLTVCVSNQVGCRM 119 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC + L R+L A EIL Q++ V +G+++SNIVMMG Sbjct: 120 GCNFCASTIGGLSRHLEAWEILDQIM-----------------KVQEDLGKRVSNIVMMG 162 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245 GEPL NFDN + L + ++ GL+ R ITLS G V I + + +I + LAISLH+ Sbjct: 163 SGEPLDNFDNSMRFLKLVNEKNGLNIGNRHITLSRCGLVDRILELADMQIPINLAISLHS 222 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ R ++PI +KY ++ L+DACR+Y +N RR+TFEY ++K N++ R+A L+++ Sbjct: 223 PYDEERKEIMPIAKKYTIKELMDACRYYISKTN-RRVTFEYALIKDKNNTDREAKKLVEL 281 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G+ +NLIP NP +Y + + I F + ++ IR G DI ACGQL Sbjct: 282 LRGMLCHVNLIPINPIAERDYEKPNIEYINKFKNYLDKNKIPVSIRNSMGSDISGACGQL 341 Query: 366 K 366 + Sbjct: 342 R 342 >gi|209526448|ref|ZP_03274975.1| radical SAM enzyme, Cfr family [Arthrospira maxima CS-328] gi|209493083|gb|EDZ93411.1| radical SAM enzyme, Cfr family [Arthrospira maxima CS-328] Length = 346 Score = 209 bits (532), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 131/360 (36%), Positives = 193/360 (53%), Gaps = 31/360 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+G EL + + + G P R Q+++WIY +G + + ++ ++ R L Sbjct: 11 LLGTSLPELTDWVQQQGQPA----YRGKQLYQWIYQKGAKSLEEITVFPKQWRSQLAT-I 65 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 + I ++ DGT K+LL+ I IETV IP R T+CVSSQVGC + C Sbjct: 66 PVGRSTIHYRAVASDGTIKYLLKLSDGQI-----IETVGIPTHDRLTVCVSSQVGCPMAC 120 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG RNL EI+ QVL + ED + R++S+IV MGMG Sbjct: 121 DFCATGKGGFFRNLETHEIVDQVLTVQ---------EDFQ--------RRVSHIVFMGMG 163 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVS 247 EPL N N +++ + +G+ +R ITLST G I ++ E ++ + LA+SLHA + Sbjct: 164 EPLLNTQNAIAAITCLNRDIGIG--QRMITLSTVGIPNRIRQLAEYQLQITLAVSLHASN 221 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 LR L+P + YPLE LI CR Y L+ RR++FEYVML G+ND P A L +++ Sbjct: 222 QTLREQLIPSAKTYPLESLISECRDYVKLT-GRRVSFEYVMLSGVNDLPSHATELASLMR 280 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 G + +NLIP+NP +Y I F + +++ + +R RGLD AACGQL++ Sbjct: 281 GFQSHVNLIPYNPINEVDYQRPSPSQIQDFFKELEQRRVAVSVRYSRGLDADAACGQLRA 340 >gi|260887299|ref|ZP_05898562.1| radical SAM enzyme, Cfr family [Selenomonas sputigena ATCC 35185] gi|330838947|ref|YP_004413527.1| radical SAM enzyme, Cfr family [Selenomonas sputigena ATCC 35185] gi|260862935|gb|EEX77435.1| radical SAM enzyme, Cfr family [Selenomonas sputigena ATCC 35185] gi|329746711|gb|AEC00068.1| radical SAM enzyme, Cfr family [Selenomonas sputigena ATCC 35185] Length = 350 Score = 209 bits (532), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 124/363 (34%), Positives = 199/363 (54%), Gaps = 26/363 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +++ GM E ++E + R + R Q+ +W+Y + + F M+++ + +R L Sbjct: 2 KNIFGMTLEAMQEDFAAL----RLEKYRARQVAEWLYKKCAKRFSDMTNLPKSLRTELET 57 Query: 67 HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++I P + + DG T K+LL F +E V + + ++C+S+Q GC+ Sbjct: 58 RYTIDTPLLRTRLDAADGRTSKFLLAF-----SDGAAVEAVLMRQPYGNSICISTQAGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + CSFC + L R+LTA E+L +VL IE M + S G K+ +V+M Sbjct: 113 MGCSFCASTLHGLARDLTAGEMLAEVLF-------------IEEM-LKSQGGKVDTMVLM 158 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G GEPL N++NV L + + L+ S R ITLSTSG VP I R+ EE + + L+ISLH Sbjct: 159 GSGEPLMNYENVVNFLRLLHEEYVLNISYRSITLSTSGIVPAIDRLAEEGMPLTLSISLH 218 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++R+ L+PINRKYPL ++ A + Y RR+T+EY++++ +ND R+A L + Sbjct: 219 APREEIRSELMPINRKYPLSDVVAAGKRYAE-KTGRRVTYEYILIRDVNDGEREAQELAE 277 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L G A +NLIP NP + ++ F + R ++ +R G DI AACGQ Sbjct: 278 LLAGQLASVNLIPINPVKERGFERPSEERTAAFCRALTRRHITATVRREMGADIQAACGQ 337 Query: 365 LKS 367 L++ Sbjct: 338 LRN 340 >gi|154485074|ref|ZP_02027522.1| hypothetical protein EUBVEN_02797 [Eubacterium ventriosum ATCC 27560] gi|149734027|gb|EDM50146.1| hypothetical protein EUBVEN_02797 [Eubacterium ventriosum ATCC 27560] Length = 320 Score = 209 bits (532), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 123/333 (36%), Positives = 189/333 (56%), Gaps = 29/333 (8%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 +EL++ L +G R QI+KWI++ ++ F M++IS+ +R L++ F I+ E Sbjct: 15 DELKQELANMG----EKPFRAGQIYKWIHIEKVQSFDEMTNISKNLRETLDEQFEIVTLE 70 Query: 75 IVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133 V IS DGTRK+L R GG V IE+V + ++C+S+Q GC + C FC + Sbjct: 71 PVRVLISKIDGTRKYLFRIK----GGAV-IESVLMRYHHGNSVCISTQSGCRMGCRFCAS 125 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 L RNL E+L Q+ +IE ++G ++SNIV+MG GEPL N Sbjct: 126 TLNGLDRNLRPSELLEQIY-------------EIE----KNIGERVSNIVLMGSGEPLDN 168 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRN 252 F+NV K L + SD GL+ S+R ITLST G VP + + + LA+SLHA +D R Sbjct: 169 FENVTKFLELISDENGLNISQRNITLSTCGLVPRMKELANMHPQITLALSLHASDDDTRR 228 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312 L+PI RKY + ++DAC++Y RRITFEY ++ G+ND+ +A L ++K + Sbjct: 229 ELLPIARKYTIAEVLDACKYYFD-KTGRRITFEYSLVAGVNDTVEEAEKLSALVKNLNCH 287 Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSG 345 +NLIP NP +++ + +K + F +++ G Sbjct: 288 VNLIPVNPIKERDFVQTGKKAVERFKRVLEKIG 320 >gi|317014803|gb|ADU82239.1| ribosomal RNA large subunit methyltransferase N [Helicobacter pylori Gambia94/24] Length = 357 Score = 209 bits (532), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 131/354 (37%), Positives = 196/354 (55%), Gaps = 31/354 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R Q++ W+Y + F+ M ++ S++ L Q F++ EI + S DG++K+L + Sbjct: 21 FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEIAHVRESVDGSKKYLFK 80 Query: 92 -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141 F A + ++ ET I E + T+CVS Q+GC + CSFC+T VR+ Sbjct: 81 SLRDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGFVRD 140 Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 L A EI+ Q LL + E +P K NIV MGMGEPL N D V K++ Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKALNIVFMGMGEPLNNLDEVCKAV 186 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260 I + G+ S +RIT+STSG I G+ +GV LAISLHAV + R+ L+P+N+K Sbjct: 187 EIFN--TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244 Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 Y +E +++ R +P L +R+ FEY+++K +NDS A L+K+L GI +K+NLI FNP Sbjct: 245 YNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303 Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372 G ++ + F++ + G IR + LDI AACGQL K L ++I Sbjct: 304 HEGSKFERPSLESARMFADFLNAKGLLCTIRESKALDIEAACGQLREKKLQQKI 357 >gi|126663212|ref|ZP_01734210.1| hypothetical protein FBBAL38_07660 [Flavobacteria bacterium BAL38] gi|126624870|gb|EAZ95560.1| hypothetical protein FBBAL38_07660 [Flavobacteria bacterium BAL38] Length = 346 Score = 209 bits (532), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 125/367 (34%), Positives = 202/367 (55%), Gaps = 24/367 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K+ + + +E+L + G R +Q+++W++ + F+ M+++S+E R + Sbjct: 3 IEKKDIRALTKEQLRTFFVSNGDKA----FRGNQVYEWLWSKRAHTFEDMTNVSKETRAM 58 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +F I + ++ + S DGT K +R I +E+V IP ++R T CVSSQVG Sbjct: 59 LQANFVINHIKVDTLQRSEDGTVKNAVRLHDDLI-----VESVLIPTETRTTACVSSQVG 113 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 CSL C+FC T K +RNL EI QV D E + R +SNIV Sbjct: 114 CSLDCNFCATARLKRMRNLEPGEIYDQV-----------AAIDNESRLY--YDRPLSNIV 160 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242 MGMGEPL N+ NV K++ + + S GL S +RIT+STSG I ++ +E+ LA+S Sbjct: 161 FMGMGEPLMNYPNVMKAIDMITSSEGLGMSPKRITVSTSGVSKMIKKMADDEVKFKLAVS 220 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LH+ ++RN ++P + +PL L +A ++ + + ++T+EYV+ KGIND + L Sbjct: 221 LHSAIEEIRNEIMPFTKSFPLTELREALEYWYRKTKS-KVTYEYVVWKGINDDKKSIDAL 279 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +K K +P K+NLI +NP + + + + + +S + +R RG DI AAC Sbjct: 280 VKFCKYVPCKVNLIEYNPIDDGMFQQASEDATNAYITALAKSNIVAKVRRSRGKDIDAAC 339 Query: 363 GQLKSLS 369 GQL + S Sbjct: 340 GQLANKS 346 >gi|282857182|ref|ZP_06266426.1| 23S rRNA m2A2503 methyltransferase [Pyramidobacter piscolens W5455] gi|282584968|gb|EFB90292.1| 23S rRNA m2A2503 methyltransferase [Pyramidobacter piscolens W5455] Length = 365 Score = 209 bits (532), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 116/336 (34%), Positives = 180/336 (53%), Gaps = 24/336 (7%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R Q+ +WIY + + DF+ M+++S+ +R L + I P++ + + DGTRK+L R Sbjct: 48 RYTADQLCQWIYKKKVFDFRAMTNLSKALRERLPELLEIRLPKLAKRQTAADGTRKYLWR 107 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 + +E+V + + T C+SSQVGC L C FC TG Q RNL+A EI+ Sbjct: 108 -----LDDGEYVESVLMDHGNHYTACISSQVGCPLRCEFCATGQQGFKRNLSAGEIVSHF 162 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 S VG I+N+V MGMGEPL N++NV K++ + + Sbjct: 163 AAMES-----------------DVGHDINNVVFMGMGEPLLNYENVVKAVRMFLEPKMRG 205 Query: 212 FSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 S R +T+STSG I R+ +E + + L +SLHA +N+LR+ ++P+N ++PL + A Sbjct: 206 LSVRHVTISTSGIPEGIRRLADEGLDIYLCLSLHAPNNELRSRIMPVNERFPLGAVFSAL 265 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 ++ + R +T EYVMLK +ND+P A L + + +NLIP+NP G ++ Sbjct: 266 EYWQKKTGVR-LTIEYVMLKNVNDTPDCAYELATLFSNLQVYVNLIPYNPVAGTQFARPS 324 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 I F + +K +R G DI AACGQL+ Sbjct: 325 ASRIAPFMKILKGLNVECEVRKEHGADIDAACGQLR 360 >gi|188585964|ref|YP_001917509.1| radical SAM enzyme, Cfr family [Natranaerobius thermophilus JW/NM-WN-LF] gi|205829820|sp|B2A2K6|RLMN_NATTJ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|179350651|gb|ACB84921.1| radical SAM enzyme, Cfr family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 351 Score = 209 bits (532), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 132/368 (35%), Positives = 201/368 (54%), Gaps = 31/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+SL + EL+E + G Q R QI+ W+Y++ + + MS+I +++R L Sbjct: 5 KQSLKDLTLNELQEYFSRKGWQQ----FRAKQIFDWMYIQQVDSIEVMSNIPKKLRQELM 60 Query: 66 QHFSIIYPEIVDEKISC---DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 ++ +I E+ I DGT K+L + + +ET + T+C+SSQ Sbjct: 61 ENCTINDLELDSNNIYTSPTDGTIKFL-----SVLKDGIGVETTIMKYDYGNTVCISSQA 115 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC++ C FC + T R+L+ E++ QVL+A +L PG E I+NI Sbjct: 116 GCNMNCVFCASTTGGKERDLSPGEMIDQVLMANKVL---PGSE------------SINNI 160 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAI 241 V+MG GEPL N+ ++ K L I +D GL+ R IT+ST G VP I + EE+ + LAI Sbjct: 161 VVMGSGEPLENYQHLIKFLKIVNDGKGLNIGMRHITVSTCGLVPEIYNLAEEELQLNLAI 220 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA +++LRN L+P+N+ YP+ L++AC+ Y RRITFEYV++K NDS A Sbjct: 221 SLHAPNDELRNKLIPLNKIYPIHELLEACQVYFQ-KTGRRITFEYVLIKDFNDSIDLAKE 279 Query: 302 LIKILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L + L + P +NLIPFNP ++ I F ++ + +R RG+D+ Sbjct: 280 LSETLTALKMPVHVNLIPFNPVEETKFTAPPSSRISDFKNNLQSNNIGVTVRKERGVDVD 339 Query: 360 AACGQLKS 367 ACGQL+S Sbjct: 340 GACGQLRS 347 >gi|226356358|ref|YP_002786098.1| ribosomal RNA large subunit methyltransferase N [Deinococcus deserti VCD115] gi|259491983|sp|C1CVX7|RLMN_DEIDV RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|226318348|gb|ACO46344.1| conserved hypothetical protein [Deinococcus deserti VCD115] Length = 343 Score = 209 bits (532), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 119/335 (35%), Positives = 174/335 (51%), Gaps = 22/335 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +W++V+G+ F M+++ E R L + + + ++ S DG+ K+L Sbjct: 17 FRRRQLLEWVFVQGVGTFDAMTNLPAEARAELARSYHLNPFREIETVRSADGSVKYLF-- 74 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + ++E VY+P R T+CVS+ VGC C+FC TG RNLT EI+ QVL Sbjct: 75 ---TLTDGRQMEAVYMPYLDRKTICVSTMVGCPARCAFCATGAMGFGRNLTPGEIVAQVL 131 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 G P R+I N+V MGMGE + N++N ++ I L Sbjct: 132 AVAGGEGIGP--------------REIRNLVFMGMGEAMLNYENTMQAARILLHPQALGM 177 Query: 213 SKRRITLSTSGFVPNIARVGEE--IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 SKRR+TLST G I ++ E +G+ LAISLHA D R ++P + ++ A Sbjct: 178 SKRRVTLSTVGIAKGIRQLAAEDDLGIKLAISLHAPDEDTRQRIIPTGAANSIAEIMAAA 237 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 R Y ++ RRIT EY ML+GIND A L +L+G+ + +NLIP NPW G + S Sbjct: 238 RDYQAVTG-RRITLEYTMLRGINDHLWQAELLADVLQGLVSHVNLIPMNPWDGSGFESST 296 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + I F + ++ G +R RG D AACGQL Sbjct: 297 EDQIQAFYDTLEARGVDVSVRRSRGKDAGAACGQL 331 >gi|208435296|ref|YP_002266962.1| hypothetical protein HPG27_1349 [Helicobacter pylori G27] gi|254807184|sp|B5Z947|RLMN_HELPG RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|208433225|gb|ACI28096.1| hypothetical protein HPG27_1349 [Helicobacter pylori G27] Length = 357 Score = 209 bits (532), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 131/354 (37%), Positives = 197/354 (55%), Gaps = 31/354 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R Q++ W+Y + F+ M ++ S++ L + F++ EI + S DG++K+L + Sbjct: 21 FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREFTLRTIEIAHVRKSIDGSKKYLFK 80 Query: 92 -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141 F A + ++ ET I E + T+CVS Q+GC + C+FC+T VRN Sbjct: 81 SLRDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCTFCFTQKGGFVRN 140 Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 L A EI+ Q LL + E +P K NIV MGMGEPL N D V K++ Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKALNIVFMGMGEPLNNLDEVCKAI 186 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260 I + G+ S +RIT+STSG I G+ +GV LAISLHAV + R+ L+P+N+K Sbjct: 187 EIFN--TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244 Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 Y +E +++ R +P L +R+ FEY+++K +NDS A L+K+L GI +K+NLI FNP Sbjct: 245 YNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303 Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372 G ++ + F++ + G IR + LDI AACGQL K LS++I Sbjct: 304 HEGSKFERPSLESARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQI 357 >gi|295109190|emb|CBL23143.1| 23S rRNA m(2)A-2503 methyltransferase [Ruminococcus obeum A2-162] Length = 346 Score = 209 bits (532), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 122/356 (34%), Positives = 196/356 (55%), Gaps = 28/356 (7%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 M EEL+E +++IG R QI+ W++ + + M++I + ++ L + + Sbjct: 7 MNMEELKELMVQIG----EKPFRAKQIYGWLHEHLVTSYDEMANIPKSLKEKLKDYPITV 62 Query: 72 YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131 E+ + DGTRK+L R + IE+V + K ++C+SSQ GC + C FC Sbjct: 63 LEELDVQTSKVDGTRKYLFRLSDGNM-----IESVLMRYKYGNSVCISSQAGCRMGCRFC 117 Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191 + L RNL E+L Q+ ++ S+G +ISN+V+MG GEPL Sbjct: 118 ASTIGGLTRNLLPSEMLDQIYRIQT-----------------SIGERISNVVVMGTGEPL 160 Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDL 250 N+DN+ + + I ++ G+ S+R +T+ST G VP I + +E + + LA+SLHA +++ Sbjct: 161 DNYDNLLRFIHILTEDGGIHISQRNLTVSTCGLVPRIYELADEKLQMTLAVSLHAPNDEK 220 Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310 R L+PI KY ++ L+DACR+Y RRITFEY ++ G+NDS +A L LKG+ Sbjct: 221 RRELMPIANKYSVDELLDACRYYFD-KTGRRITFEYSLVAGVNDSKENAQELAGRLKGLN 279 Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +NLIP NP ++ S ++ + F +++ G + IR G DI ACGQL+ Sbjct: 280 CHVNLIPVNPVRERSFVRSTRQAVENFKINLEKCGINGTIRREMGSDIDGACGQLR 335 >gi|217032118|ref|ZP_03437618.1| hypothetical protein HPB128_16g78 [Helicobacter pylori B128] gi|216946266|gb|EEC24874.1| hypothetical protein HPB128_16g78 [Helicobacter pylori B128] Length = 365 Score = 209 bits (532), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 131/357 (36%), Positives = 197/357 (55%), Gaps = 31/357 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R Q++ W+Y + F+ M ++ S++ L + F++ EI + S DG++K+L + Sbjct: 21 FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREFTLRTIEIAHVRKSVDGSKKYLFK 80 Query: 92 -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141 F A + ++ ET + E + T+CVS Q+GC + CSFC+T VRN Sbjct: 81 SLKDNHTFEAVLLKMKDKKIDGETNAVLEGEKYTVCVSCQIGCQVGCSFCFTQKGGFVRN 140 Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 L A EI+ Q LL + E +P K NIV MGMGEPL N D V K++ Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKAFNIVFMGMGEPLNNLDEVCKAI 186 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260 I + G+ S +RIT+STSG I G+ +GV LAISLHAV + R+ L+P+N+K Sbjct: 187 EIFN--TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244 Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 Y +E +++ R +P L +R+ FEY+++K +ND A L+K+L GI +K+NLI FNP Sbjct: 245 YNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLNDGLDCAKKLLKLLNGIKSKVNLILFNP 303 Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRIPKV 375 G ++ + F++ + G IR + LDI AACGQL K LS++I K Sbjct: 304 HEGSKFERPSLESARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQILKT 360 >gi|296133296|ref|YP_003640543.1| radical SAM enzyme, Cfr family [Thermincola sp. JR] gi|296031874|gb|ADG82642.1| radical SAM enzyme, Cfr family [Thermincola potens JR] Length = 356 Score = 209 bits (532), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 124/353 (35%), Positives = 191/353 (54%), Gaps = 28/353 (7%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 EEL L+++G R QI W++ +G+ + M+++ +R L++ I E Sbjct: 13 EELTAFLIELG----EKPFRAKQIADWVFKKGVAEIADMTNLPLSLRERLSKTAYIGRLE 68 Query: 75 IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134 I+ E+ S DGT K+L + +ETV++ ++CVS+QVGC + C FC + Sbjct: 69 IMKEQQSRDGTTKYLFE-----LADGNTVETVFLKHNYGNSVCVSTQVGCKMGCLFCAST 123 Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194 RNL+ EI QVL + +++S++V+MG GEPL N+ Sbjct: 124 IGGFYRNLSPGEIYDQVL-----------------RIEQDKKKRVSSVVIMGSGEPLDNY 166 Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNI 253 + V K + + + L+ R ITLST G VP I ++ EE + + L++SLHA +N+LRN Sbjct: 167 EAVLKFIRLITAPYALNVGMRHITLSTCGLVPQIYKLAEEKLALTLSVSLHAPNNELRNK 226 Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313 L+P+NRKYPLE LI AC Y RRITFEY ++K +NDS A L +++KG+ + Sbjct: 227 LMPVNRKYPLEELIPACHEYIK-KTGRRITFEYTLIKDVNDSQGHAEELARLIKGMLCHV 285 Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 NLIP NP + + + F ++R+ + +R G DI AACGQL+ Sbjct: 286 NLIPVNPVAERRWYRPSTETVKRFQTILERNRVPATVRREMGTDIDAACGQLR 338 >gi|260437315|ref|ZP_05791131.1| radical SAM enzyme, Cfr family [Butyrivibrio crossotus DSM 2876] gi|292810227|gb|EFF69432.1| radical SAM enzyme, Cfr family [Butyrivibrio crossotus DSM 2876] Length = 349 Score = 209 bits (531), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 125/355 (35%), Positives = 194/355 (54%), Gaps = 31/355 (8%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL--NQHFSIIY 72 +EL E ++ +G P + R Q+++W++VR + + M++I ++ L N ++ +Y Sbjct: 12 DELTEYIVSLGEP----KFRAKQLYEWMHVRLVPGYDEMTNIPASLKAKLKENTFYASLY 67 Query: 73 PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132 PE V + DGT K+L R G IE+V + ++C+SSQ GC + C FC Sbjct: 68 PERV-QVSKEDGTSKYLFRL----YDGNY-IESVLMHYHHGDSVCISSQAGCRMGCRFCA 121 Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192 + L RNL E+L Q+ +SL G+ ++SN+V+MG GEP Sbjct: 122 STLDGLARNLYPSEMLDQIYRIQSLTGN-----------------RVSNVVVMGSGEPFD 164 Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLR 251 NFDN K + +D GL+ S R +T+ST G VP I + + + + LAISLH+ ++++R Sbjct: 165 NFDNFIKFEKLLTDENGLNISARNLTVSTCGLVPRIYELADMRLQITLAISLHSPTDEMR 224 Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311 L+P+ KY + ++DAC +Y RRITFEY ++KG ND AL L ++KG+ Sbjct: 225 KKLMPVANKYSISEIMDACSYYIE-KTGRRITFEYSLVKGENDGSEHALILADLVKGMNC 283 Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 INLIP NP +Y SD K I F + ++++ +R G DI ACGQL+ Sbjct: 284 HINLIPVNPIKERDYRQSDTKSIKKFKDILEKNRIQVTVRREMGRDIDGACGQLR 338 >gi|258515524|ref|YP_003191746.1| radical SAM enzyme, Cfr family [Desulfotomaculum acetoxidans DSM 771] gi|257779229|gb|ACV63123.1| radical SAM enzyme, Cfr family [Desulfotomaculum acetoxidans DSM 771] Length = 349 Score = 209 bits (531), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 124/365 (33%), Positives = 203/365 (55%), Gaps = 29/365 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++ L+ + ++E +L+ +P + R QI +W++ +G+ F M+++ ++R Sbjct: 1 MESTGLMDLTLPQIENWVLQEAMP----KFRARQIAEWMFQKGVDSFDQMTNLPLDLRKK 56 Query: 64 LNQHFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 LNQ + +++ +++S GT K+L + + +ETV + + ++CVSSQV Sbjct: 57 LNQTAYLEDLQVIKKQVSAQTGTVKYLFK-----LKDGQAVETVLMRQVYGLSVCVSSQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC ++C C + LVRNL+A EI QV+ V +IS++ Sbjct: 112 GCRMSCRLCASTLSGLVRNLSAGEIYAQVM-----------------SVQKEQSSRISHV 154 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 V+MG GEPL NF + ++ + GL+ R ITLST G VP I + E+ + + LA+ Sbjct: 155 VIMGSGEPLDNFQHTLAFMTNINADYGLNIGYRHITLSTCGLVPEILALAEKKLPLTLAV 214 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA +N LR+ +VP+NRKYPL++L+ AC+ Y L+ RR++FEY ++KG+ND+ A Sbjct: 215 SLHAPNNKLRDSIVPVNRKYPLQVLLKACKDYTKLT-GRRVSFEYALIKGLNDTTVCAQE 273 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L +LK INLIP NP P + ++I F + +++ G +R G DI AA Sbjct: 274 LADLLKNFSCHINLIPVNPVPERGLQRTPVQNIQRFKDILEKEGLKVTVRREMGSDIDAA 333 Query: 362 CGQLK 366 CGQL+ Sbjct: 334 CGQLR 338 >gi|284051696|ref|ZP_06381906.1| radical SAM protein [Arthrospira platensis str. Paraca] gi|291570690|dbj|BAI92962.1| ribosomal RNA large subunit methyltransferase N [Arthrospira platensis NIES-39] Length = 344 Score = 209 bits (531), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 131/360 (36%), Positives = 192/360 (53%), Gaps = 31/360 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+G EL + + + G P R Q+++WIY +G + + ++ ++ R L Sbjct: 11 LLGTSLPELTDWVQQQGQPA----YRGKQLYQWIYQKGAKSLEEITVFPKQWRSQLAT-I 65 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 + I ++ DGT K+LL+ I IETV IP R T+CVSSQVGC + C Sbjct: 66 PVGRSTIHYRAVASDGTIKYLLKLSDGQI-----IETVGIPTHDRLTVCVSSQVGCPMAC 120 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG RNL EI+ QVL + ED + R++S+IV MGMG Sbjct: 121 DFCATGKGGFFRNLETHEIVDQVLTVQ---------EDFQ--------RRVSHIVFMGMG 163 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVS 247 EPL N N +++ + +G+ +R ITLST G I ++ E ++ + LA+SLHA + Sbjct: 164 EPLLNTQNAIAAITCLNRDIGIG--QRMITLSTVGIPNRIRQLAEYQLQITLAVSLHASN 221 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 LR L+P + YPLE LI CR Y L+ RR++FEYVML G+ND P A L +++ Sbjct: 222 QTLREQLIPSAKTYPLEALISECRDYVKLT-GRRVSFEYVMLAGVNDLPTHAAELASLMR 280 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 G + +NLIP+NP +Y I F + ++ + +R RGLD AACGQL++ Sbjct: 281 GFQSHVNLIPYNPINEVDYQRPSPSQIQGFVKELEERRVAVSVRYSRGLDADAACGQLRA 340 >gi|254421960|ref|ZP_05035678.1| radical SAM enzyme, Cfr family [Synechococcus sp. PCC 7335] gi|196189449|gb|EDX84413.1| radical SAM enzyme, Cfr family [Synechococcus sp. PCC 7335] Length = 372 Score = 209 bits (531), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 131/360 (36%), Positives = 195/360 (54%), Gaps = 31/360 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+G E L E +++ G P R Q+ +WIY +GIR ++ S++ R ++ F Sbjct: 32 LLGRSIEALTEWVIQHGQPA----YRGKQLHQWIYQKGIRSLDEVTVFSKKWRAEVS-GF 86 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 + I S DGT K+LLR I IE V IP R T+CVSSQ+GC + C Sbjct: 87 PVGRSHIHHRSESPDGTIKYLLRLRDGLI-----IEAVGIPSDKRLTVCVSSQIGCPMGC 141 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG RNL EI+ QVL + ED + R++SNIV MGMG Sbjct: 142 DFCATGKGGFTRNLETYEIVDQVLTVQ---------EDFQ--------RRVSNIVFMGMG 184 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVS 247 EPL N + V ++ + +G+ +R +T+ST G +I R+ E+ + + LA+SLHA + Sbjct: 185 EPLLNTEAVIGAVRSLNQDIGIG--QRMMTVSTVGIPGHIRRLAEQQMQITLAVSLHASN 242 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 LR L+P ++YPL L+D CR Y ++ RR+TFEY++L +ND A L L+ Sbjct: 243 QALRTRLIPSAKQYPLSALLDECRDYVKMT-GRRVTFEYILLADLNDRSEHAAELASELR 301 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 G + +NLIP+NP +Y + + F++ +K G + +R RGL+ AACGQL++ Sbjct: 302 GFQSHVNLIPYNPISEVDYQRPSRARVEGFTQQLKDKGIAVSVRYSRGLEKDAACGQLRA 361 >gi|260588063|ref|ZP_05853976.1| radical SAM enzyme, Cfr family [Blautia hansenii DSM 20583] gi|260541590|gb|EEX22159.1| radical SAM enzyme, Cfr family [Blautia hansenii DSM 20583] Length = 348 Score = 209 bits (531), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 118/336 (35%), Positives = 190/336 (56%), Gaps = 25/336 (7%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKIS-CDGTRKWLLR 91 R QI++W++ + F MS++S +R L + + ++++ + S DGT+K+L Sbjct: 26 FRAKQIYEWLHQKQAESFDEMSNLSAALREKLKERCVLTTLKMLEVQTSKIDGTQKYLFA 85 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 P G V +E+V + K ++C+SSQVGC + C FC + RNL E+L Q+ Sbjct: 86 LP----DGNV-VESVLMKYKHGNSVCISSQVGCKMGCRFCASTIGGWTRNLLPSEMLEQI 140 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 + L G+ ++SN+V+MG GEPL N++N+ + + + +D GL Sbjct: 141 YRIQKLSGE-----------------RVSNVVVMGTGEPLDNYENLLQFIRLLTDENGLH 183 Query: 212 FSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 S+R +T+ST G VP + + EE + + LAISLHA + + R L+PI KY +E +++AC Sbjct: 184 ISQRNLTVSTCGIVPKMYALAEENLQITLAISLHASNQEKRAELMPIANKYSIEEVLEAC 243 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 R+Y RR+TFEY ++ G ND+ DA L +++KG+ +NLIP NP +Y+ SD Sbjct: 244 RNYFE-KTGRRLTFEYSLVGGKNDTKEDAEELARLIKGLNCHVNLIPVNPIKERDYVQSD 302 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +K I F +++ + IR G DI ACGQL+ Sbjct: 303 KKVIENFKNKLEKYQINVTIRREMGRDIDGACGQLR 338 >gi|307153286|ref|YP_003888670.1| radical SAM enzyme, Cfr family [Cyanothece sp. PCC 7822] gi|306983514|gb|ADN15395.1| radical SAM enzyme, Cfr family [Cyanothece sp. PCC 7822] Length = 350 Score = 209 bits (531), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 126/360 (35%), Positives = 194/360 (53%), Gaps = 31/360 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+G +EL E + + G P R Q+++W+Y +G R +S + R + + + Sbjct: 18 LLGKSLQELTEWVQEQGQPA----YRGKQLYQWLYEKGARSLSDISVFPKSWREEV-KDY 72 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 I +I I+ D TRK+LLR I IETV IP + R T+CVSSQVGC + C Sbjct: 73 PIGRSQIHHRSIAPDKTRKYLLRLQDGLI-----IETVGIPTEKRLTVCVSSQVGCPMDC 127 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG RNL EI+ QVL + ED + R++S++V MGMG Sbjct: 128 DFCATGKGGFTRNLAPHEIVDQVLTVQ---------EDFQ--------RRVSHVVFMGMG 170 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVS 247 EPL N V +++I + +G+ R +T+ST G I ++ ++ V A+SLHA + Sbjct: 171 EPLLNLKAVVSAVNILNQDVGIGM--RSLTISTVGLPAKIEQLARHQLQVTFAVSLHAPN 228 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 LR L+P + YPL+ L++ C Y ++ RR+TFEY++L G+ND P A L ++ Sbjct: 229 QALREQLIPSAKHYPLKNLLEDCHKYVEMTK-RRVTFEYILLAGVNDLPEQAQELAVQIR 287 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 G + +NLIP+NP +Y + + I F +++ + +R RGL+ AACGQL++ Sbjct: 288 GFQSHVNLIPYNPISEADYKRPNSQRINAFLNILQQENIAVSVRYSRGLETDAACGQLRA 347 >gi|205829720|sp|Q6MDD0|RLMN2_PARUW RecName: Full=Ribosomal RNA large subunit methyltransferase N 2; AltName: Full=23S rRNA m2A2503 methyltransferase 2 Length = 358 Score = 209 bits (531), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 133/353 (37%), Positives = 190/353 (53%), Gaps = 24/353 (6%) Query: 14 REELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYP 73 ++L E L G + H + QI WIY +G+ + MS++SQ +R L +H + Sbjct: 8 HQKLVEWLKAHGEKEFHAK----QILSWIYQKGVLSWDKMSNLSQSLREKLAKHIRLPVL 63 Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133 E+V S D + ++F R G + +E+V I R T+CVSSQVGC C+FC + Sbjct: 64 ELVRYTESID---QETIKFLWRLRDGNL-VESVLILSGIRRTVCVSSQVGCPAKCAFCAS 119 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 G Q RNL EI+ Q+L + L S G K+S++V MGMGEPL N Sbjct: 120 GQQGFFRNLRPTEIIEQILQINAWLS--------------SKGEKVSHVVYMGMGEPLKN 165 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252 +++V S+ + S + S+RRIT+ST G V I R+ +E + V L +SLHA + +R Sbjct: 166 YESVVASIRVLSHPDFCNISQRRITVSTVGVVEGIKRLSKEGLKVNLVLSLHAPNQHIRK 225 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312 ++P RKYPLE ++++ Y R ITFEY +L GIND P A L +LKG Sbjct: 226 KIIPYARKYPLEEILESMDEY-AQKTKRDITFEYTLLAGINDHPDHAHELAHLLKGKQCT 284 Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +NLIP+NP PG ++K I F + S + R +G DI AACGQL Sbjct: 285 VNLIPYNPIPGLRLKRPEKKAIKQFRSVLYGSHIVNTCRYTKGDDIGAACGQL 337 >gi|312130260|ref|YP_003997600.1| 23S rRNA m(2)a-2503 methyltransferase [Leadbetterella byssophila DSM 17132] gi|311906806|gb|ADQ17247.1| 23S rRNA m(2)A-2503 methyltransferase [Leadbetterella byssophila DSM 17132] Length = 368 Score = 209 bits (531), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 125/362 (34%), Positives = 200/362 (55%), Gaps = 24/362 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK+ L + E+L+ L ++G P R QI +W++ + Q M+++S+ +R L Sbjct: 25 KKKDLRKVKWEDLQAWLKQVGEPA----FRAKQIREWLWQKSAWSIQDMTNLSKSLREKL 80 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 F I + + S DGT ++ + G + +E V IP +R T C+SSQVGC Sbjct: 81 EAEFEIRPVTVHTAQYSADGT----IKSGFKLYDGHL-VEGVLIPTDTRMTACISSQVGC 135 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 SLTC FC TG RNL A EI QV+L I+ + ++NIV Sbjct: 136 SLTCKFCATGYMNRERNLDAAEIYDQVIL-------------IKNQAEERYSQPLTNIVY 182 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MGMGEPL N+ V +S+ + GL++S +RIT+ST+G I ++G++ + LA+SL Sbjct: 183 MGMGEPLLNYAAVLESVERITSPEGLNWSPKRITVSTAGIAKMIKKLGDDGVKFNLALSL 242 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++ RN ++PIN L+ L +A +++ +IT EY++ G ND DA L+ Sbjct: 243 HAANDEKRNTIMPINESNSLKNLSEALQYFYK-KTGNKITLEYIVFHGFNDKIADAKELL 301 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 + +K +P+K+N+I +NP ++ +D + I F++ ++ + + IR RG DI AACG Sbjct: 302 EFVKRVPSKVNIIEYNPISEANFVNADPEAIDKFAKYLEDNRVTVNIRRSRGKDIDAACG 361 Query: 364 QL 365 QL Sbjct: 362 QL 363 >gi|262066381|ref|ZP_06025993.1| radical SAM enzyme, Cfr family [Fusobacterium periodonticum ATCC 33693] gi|291379946|gb|EFE87464.1| radical SAM enzyme, Cfr family [Fusobacterium periodonticum ATCC 33693] Length = 358 Score = 209 bits (531), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 130/376 (34%), Positives = 205/376 (54%), Gaps = 33/376 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +++ + +EEL E L+ +G+ + + + +++ W++ + IR+F M+++S + R +L Sbjct: 4 EKINILNLTQEELTEFLVSLGLKKFYGK----EVFIWLHKKIIRNFDDMTNLSLKDREIL 59 Query: 65 NQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLC 117 ++ I + ++ ++S D T K+L + IETV + + R TLC Sbjct: 60 KENAYIPFFNLLKHQVSKLDKTEKFLFELEDKGT-----IETVLLRHRDSKNKEIRNTLC 114 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 VSSQVGC + CSFC TG +RNL+ EIL QV L Sbjct: 115 VSSQVGCPVKCSFCATGQGGYMRNLSVSEILNQVYTVERRL--------------RKKDE 160 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIG 236 ++N+V MGMGEPL N DN+ +LSI S+ G++ SKR+IT+STSG VP I ++ E+I Sbjct: 161 SLNNLVFMGMGEPLLNIDNLSTALSIISNENGINISKRKITISTSGVVPGIEKILLEKIP 220 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 + LA+SLH+ N+ R+ ++PIN+ +PLE L Y + RRITFEY+++ N S Sbjct: 221 IELAVSLHSAINEKRDQIIPINKNFPLEDLSAVLVEYQKQT-KRRITFEYILIDNFNISE 279 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRG 355 DA L + +NLIP+N G E+ K I F +K + +R +G Sbjct: 280 VDANALADFIHQFDHVVNLIPYNEVEGVEHTRPSMKKIERFYNYLKNVRKVNVTLRQEKG 339 Query: 356 LDILAACGQLKSLSKR 371 DI ACGQL+ +K+ Sbjct: 340 SDIDGACGQLRQRNKK 355 >gi|223940814|ref|ZP_03632646.1| radical SAM enzyme, Cfr family [bacterium Ellin514] gi|223890519|gb|EEF57048.1| radical SAM enzyme, Cfr family [bacterium Ellin514] Length = 378 Score = 209 bits (531), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 124/375 (33%), Positives = 204/375 (54%), Gaps = 32/375 (8%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 EEL+ ++ P R Q+ +W+YV + + M+++ + +R +L + F++ E Sbjct: 11 EELQARFKELNQPG----YRVGQLLEWLYVHRVASWDAMTNLPKGLREVLQKEFTLQTLE 66 Query: 75 IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK--------SRGTLCVSSQVGCSL 126 +V + S D T+K+L + + IE+V IP R TLCVS+QVGC+ Sbjct: 67 LVRRQGSRDTTQKFLWKLNDGAM-----IESVLIPANPALYGEASDRHTLCVSTQVGCAY 121 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS---------VGR 177 C FC +G + RNL EEI+ Q+L + + E+ +G P V R Sbjct: 122 GCKFCASGLEGWKRNLRVEEIVEQILA----IERWNAAEEAKGSKPPEANPKPKTTEVTR 177 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IG 236 I+N+V+MGMGEPL N++N+ K+L I + G R+IT+STSG P I ++ ++ + Sbjct: 178 FINNLVIMGMGEPLANYENLLKALRILNAPWGGGIGARKITISTSGLAPQIRKLADDPLQ 237 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 LAISLH ++++RN ++P+N+KYPL+ L AC +Y + R ITFEY+++ G+ND Sbjct: 238 FRLAISLHGATDEVRNKIMPVNKKYPLKELTAACEYYQQKKD-RMITFEYILIAGVNDGL 296 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L ++ + AK+NLIP+N + + F +++ + +R +G Sbjct: 297 DQVKPLAQLAHRLNAKVNLIPYNKVEDLTWERPTEAAQEAFLATLEKERVVATLRREKGH 356 Query: 357 DILAACGQLKSLSKR 371 DI AACGQL+ ++R Sbjct: 357 DIDAACGQLRLKTER 371 >gi|332653341|ref|ZP_08419086.1| radical SAM enzyme, Cfr family [Ruminococcaceae bacterium D16] gi|332518487|gb|EGJ48090.1| radical SAM enzyme, Cfr family [Ruminococcaceae bacterium D16] Length = 352 Score = 208 bits (530), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 131/357 (36%), Positives = 195/357 (54%), Gaps = 32/357 (8%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 M EEL L G P R QI++WIY RG+ F M+D+S+ +R L + + Sbjct: 1 MTLEELTAWLKSQGEPG----FRAKQIFRWIY-RGVTSFDEMTDLSKSLREKLKETCFLT 55 Query: 72 YPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130 P++ +++S DGT K+L +G IETV + K T+CVSSQVGC + C+F Sbjct: 56 VPKVARKQVSQLDGTIKYLWE-----LGDGNCIETVLMRYKHGNTVCVSSQVGCRMGCAF 110 Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 C + VRNLT E++ QVL + G ISNIV+MG+GEP Sbjct: 111 CASTLAGKVRNLTPAEMVDQVLFTQL-----------------DSGAPISNIVLMGIGEP 153 Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSND 249 L N+D V K L++ + GL+ R I+LST G V I ++ + + + L++SLHA ++ Sbjct: 154 LDNYDTVMKFLTLVNHPEGLNIGMRHISLSTCGLVDQIDKLAQRGLQLTLSVSLHAPDDE 213 Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309 R+ ++P+NR +E L+D CR Y + RRI++EY M+ G+NDS R A L +LKG+ Sbjct: 214 TRSKIMPVNRAVGVERLMDTCRRYFE-TTGRRISYEYAMIDGVNDSDRQADLLAGLLKGM 272 Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 P +NLIP N E + + F + ++ G + +R G DI A+CGQL+ Sbjct: 273 PGHVNLIPLNDVE--ESPLKPSRRVAAFQKRLESHGVTVTVRRRLGSDIDASCGQLR 327 >gi|323701797|ref|ZP_08113468.1| radical SAM enzyme, Cfr family [Desulfotomaculum nigrificans DSM 574] gi|323533333|gb|EGB23201.1| radical SAM enzyme, Cfr family [Desulfotomaculum nigrificans DSM 574] Length = 352 Score = 208 bits (530), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 127/336 (37%), Positives = 187/336 (55%), Gaps = 25/336 (7%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDG-TRKWLLR 91 R QI +W+ +G+ F M++IS+E++ L I +++ + S G T K+LL Sbjct: 31 FRAIQICQWVLAKGVTSFDQMTNISKELQAKLADVAYISQTKMLARQQSARGDTIKYLL- 89 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 + +E V + + CVS+QVGC + C FC + + LVR+LT EI QV Sbjct: 90 ----GLADGHAVECVLMKHSYGNSACVSTQVGCRMGCMFCASTIEGLVRSLTPGEIYDQV 145 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 L + G ++S+IV+MG GEPL N+DNV K L + GL+ Sbjct: 146 L-----------------GIQQDTGERVSHIVIMGSGEPLDNYDNVIKFLENVNADYGLN 188 Query: 212 FSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 R ITLST G VP + ++ +++ + LA+SLHA +++LRN LVPINR+Y L LI AC Sbjct: 189 IGYRHITLSTCGLVPKLKQLAFKKLPITLAVSLHAPNDELRNQLVPINRRYSLAELIPAC 248 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 R Y ++ RRITFEY +LK INDS A L+ +LKG+ +NLIP NP + + Sbjct: 249 REYTEIT-GRRITFEYALLKEINDSEEHARQLVNLLKGMLCHVNLIPANPVEEKGFERTP 307 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + + F I+++G + +R G DI AACGQL+ Sbjct: 308 PEKVERFRNIIEKAGLAVTVRRELGTDIDAACGQLR 343 >gi|310828893|ref|YP_003961250.1| hypothetical protein ELI_3325 [Eubacterium limosum KIST612] gi|308740627|gb|ADO38287.1| hypothetical protein ELI_3325 [Eubacterium limosum KIST612] Length = 340 Score = 208 bits (530), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 126/337 (37%), Positives = 187/337 (55%), Gaps = 29/337 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD-EKISCDGTRKWLLR 91 R Q+++W+Y + +++S+ +R L H++I + I ++ DGTRK+L+R Sbjct: 24 FRGKQLYQWLYEKKAAQLDDCTNLSKNLREKLKSHYNIEHGSIEKTQEDPEDGTRKYLIR 83 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 P IETV + +LCVSSQVGC + C+FC + +R+L A EIL Q+ Sbjct: 84 LP-----DGNSIETVLMSYHHGYSLCVSSQVGCRMGCAFCASTKGGKIRDLEAGEILDQI 138 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 L V G +ISN+V+MG+GEPL N+DN+ K L+IA++ G+ Sbjct: 139 YL-----------------VEQEAGIRISNVVIMGIGEPLDNYDNILKFLNIANEGWGIG 181 Query: 212 FSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 +R+ITLST G VP I + E ++ + LAISLH+ + R L+P+ +KY +E L+ C Sbjct: 182 --QRKITLSTCGLVPQIEALAELDLQINLAISLHSPFQERRETLMPVAKKYRIEELLKVC 239 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 +Y RRITFEY ++ G ND P D L +IL +P INLI NP Y S Sbjct: 240 NNYF-TKTKRRITFEYALIDGFNDRPEDVAELAEILGKMPCHINLIGLNPVTESAYKGS- 297 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 +++ FS +K+ G + IR G +I AACGQL+ Sbjct: 298 -RNVNFFSNELKKRGITCTIRRKIGDNIDAACGQLRQ 333 >gi|322380339|ref|ZP_08054550.1| Fe-S cluster redox enzyme [Helicobacter suis HS5] gi|321147246|gb|EFX41935.1| Fe-S cluster redox enzyme [Helicobacter suis HS5] Length = 383 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 128/352 (36%), Positives = 195/352 (55%), Gaps = 34/352 (9%) Query: 35 TSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPA 94 QI+ W+Y R F M ++ + ++ L + F I +++ ++ S D + K L Sbjct: 49 AKQIFAWLYQRYATSFDQMHNLPKSLKTTLQRDFCIQNLKLLVKECSQDKSEKCLF---- 104 Query: 95 RCIGGPVEIETVYI--PEKSRG-----------TLCVSSQVGCSLTCSFCYTGTQKLVRN 141 E+V++ EK G T C+SSQ+GC + C FC T VRN Sbjct: 105 -ATHDQHSFESVFMVMKEKQIGDKGQILAQEKLTFCLSSQIGCKVGCVFCATAKGGFVRN 163 Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 L A EI+ QV+ + + E +G+ N+V MGMGEPL NF+ V +SL Sbjct: 164 LKAGEIVEQVVALKRM----HSLEPTKGI----------NLVFMGMGEPLHNFEQVVRSL 209 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRK 260 I S GL+ S RRITLSTSG VP + +G +GV LAISLHAV+++LR+ L+PIN+ Sbjct: 210 KILSHPHGLNISPRRITLSTSGVVPMMDILGALNLGVQLAISLHAVNDELRSKLMPINKT 269 Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 Y ++ LI A R +P + +R+ FEY+++K ND A L+++L G+ +KINLIP+NP Sbjct: 270 YNIQELIKAARRFP-IDARKRLMFEYLVIKDYNDGLEHAKALLRLLNGLRSKINLIPYNP 328 Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRI 372 ++ D + + F++ + + G +R +GLDI AACGQL+ ++ I Sbjct: 329 TTHSKFERPDLEKVKQFADFLNQRGLLCTMRLSKGLDISAACGQLREKTRGI 380 >gi|328475785|gb|EGF46521.1| ribosomal RNA large subunit methyltransferase N [Listeria monocytogenes 220] Length = 357 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 124/346 (35%), Positives = 202/346 (58%), Gaps = 30/346 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K S+ G+ +L E L G + R +Q+W W+Y + ++ F+ MS++ +E L Sbjct: 1 MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56 Query: 64 LNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L +F + + ++V E S DGT K+L + + IETV + ++ ++CV++Q Sbjct: 57 LTANFVMNTLEEQVVQE--STDGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQ 109 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC++ C+FC +G K R+LTA EI+ Q++ + L D E+ ++S+ Sbjct: 110 VGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYL-DGRNLEE-----------RVSH 157 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLA 240 +V+MG+GEP N+DNV L + + GL+ R IT+STSG P I E+ V LA Sbjct: 158 VVVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLA 217 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ISLHA +N+LR ++ IN+ Y +E L++A +Y +N RRITFEY+MLKG+ND ++AL Sbjct: 218 ISLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTN-RRITFEYIMLKGVNDHKKEAL 276 Query: 301 NLIKIL--KGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKR 343 L +L A +NLIP+NP +Y S ++D++ F + +K+ Sbjct: 277 ELAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKK 322 >gi|228470999|ref|ZP_04055844.1| radical SAM enzyme, Cfr family [Porphyromonas uenonis 60-3] gi|228307396|gb|EEK16410.1| radical SAM enzyme, Cfr family [Porphyromonas uenonis 60-3] Length = 341 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 130/365 (35%), Positives = 194/365 (53%), Gaps = 30/365 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++G +L E + +G+P+ R QI W+Y + + + M+++S++ R LL Sbjct: 5 HQILGKTPAQLTELAVGLGLPKYTGR----QIADWLYQKHVSSWDEMTNLSKKARALLAS 60 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 H+ I ++ S DGT K+L F A GG +ETV IPE R TLCVSSQ GC + Sbjct: 61 HYEIGRAAPHLQQTSRDGTVKYL--FAA---GGGF-VETVMIPEGDRATLCVSSQRGCKM 114 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG Q NL+ EIL Q+L +P V +++NIV MG Sbjct: 115 NCLFCMTGKQGFGANLSTSEILNQIL------------------SVPEVN-ELTNIVFMG 155 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEP+ N D + + ++ +D GL+ S +RIT+ST G P + R EE LAISLH Sbjct: 156 MGEPMDNIDTLLQVITCLTDPQGLAMSPKRITVSTIGLRPGLERFLEECTCHLAISLHNP 215 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ R ++P+ R PL + RHY S RR+TFEY++ G+ND+PR L ++L Sbjct: 216 LSEERLSIMPVERAMPLADTVALLRHY-DWSRQRRLTFEYIVFSGLNDTPRHLAALKRLL 274 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + +NLI ++ P + SD + + + +G + IRT RG DI AACG L Sbjct: 275 AQLDCHVNLIRYHRIPHIDLPSSDMTRMEWLRDWLCEAGIPTTIRTSRGEDISAACGMLS 334 Query: 367 SLSKR 371 + ++ Sbjct: 335 TQEQQ 339 >gi|288803681|ref|ZP_06409111.1| radical SAM enzyme, Cfr family [Prevotella melaninogenica D18] gi|288333921|gb|EFC72366.1| radical SAM enzyme, Cfr family [Prevotella melaninogenica D18] Length = 350 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 126/365 (34%), Positives = 194/365 (53%), Gaps = 29/365 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ L+GM EL+E +G+P QI KW+Y + ++ M++IS+ R L Sbjct: 5 KKYLLGMTLGELKEVAKSLGMPA----FTGGQIAKWLYTQHVKSIDEMTNISKANREKLA 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++I E +D + S DGT K+L FP G +ETVYIP++ TLCVSSQVGC Sbjct: 61 AEYAIGCKEPIDAQHSKDGTIKYL--FPTDS--GKF-VETVYIPDEDHATLCVSSQVGCK 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q +L+A +IL Q+ +P K++NIV M Sbjct: 116 MNCLFCQTGKQGFEGSLSATDILNQIY------------------SLPERD-KLTNIVFM 156 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 G GEP+ N DNV ++ I + G +S +RIT+S+ G + R +E +AIS+H Sbjct: 157 GQGEPMDNLDNVLRTTEIMTADFGYGWSPKRITVSSVGVKGKLKRFLDESDCHVAISMHT 216 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ R+ L+P + ++ +I+ +Y S+ RR++FEY++ K NDS A ++++ Sbjct: 217 PLHEQRSELMPAEKGMSIDSIIELLSNYD-FSHQRRLSFEYIVFKDFNDSEEHAKAIVQL 275 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG+ ++NLI F+P P D + F + + G + IR RG DI AACG L Sbjct: 276 LKGLDCRMNLIRFHPIPNIPLQGVDDHRMEKFRNYLTQHGVFTTIRASRGQDIFAACGLL 335 Query: 366 KSLSK 370 + K Sbjct: 336 STAKK 340 >gi|322379396|ref|ZP_08053767.1| Predicted Fe-S-cluster redox enzyme [Helicobacter suis HS1] gi|321148214|gb|EFX42743.1| Predicted Fe-S-cluster redox enzyme [Helicobacter suis HS1] Length = 383 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 128/352 (36%), Positives = 195/352 (55%), Gaps = 34/352 (9%) Query: 35 TSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPA 94 QI+ W+Y R F M ++ + ++ L + F I +++ ++ S D + K L Sbjct: 49 AKQIFAWLYQRYATSFDQMHNLPKSLKTTLQRDFCIQNLKLLVKECSQDKSEKCLF---- 104 Query: 95 RCIGGPVEIETVYI--PEKSRG-----------TLCVSSQVGCSLTCSFCYTGTQKLVRN 141 E+V++ EK G T C+SSQ+GC + C FC T VRN Sbjct: 105 -ATHDQHSFESVFMVMKEKQIGDKGQILAQEKLTFCLSSQIGCKVGCVFCATAKGGFVRN 163 Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 L A EI+ QV+ + + E +G+ N+V MGMGEPL NF+ V +SL Sbjct: 164 LKAGEIVEQVVALKRM----HSLEPTKGI----------NLVFMGMGEPLHNFEQVVRSL 209 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRK 260 I S GL+ S RRITLSTSG VP + +G +GV LAISLHAV+++LR+ L+PIN+ Sbjct: 210 KILSHPHGLNISPRRITLSTSGVVPMMDILGALNLGVQLAISLHAVNDELRSKLMPINKT 269 Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 Y ++ LI A R +P + +R+ FEY+++K ND A L+++L G+ +KINLIP+NP Sbjct: 270 YNIQELIKAARRFP-IDARKRLMFEYLVIKDYNDGLEHAKALLRLLNGLRSKINLIPYNP 328 Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRI 372 ++ D + + F++ + + G +R +GLDI AACGQL+ ++ I Sbjct: 329 TTHSKFERPDLEKVKQFADFLNQRGLLCTMRLSKGLDISAACGQLREKTRGI 380 >gi|168015505|ref|XP_001760291.1| predicted protein [Physcomitrella patens subsp. patens] gi|162688671|gb|EDQ75047.1| predicted protein [Physcomitrella patens subsp. patens] Length = 433 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 138/386 (35%), Positives = 206/386 (53%), Gaps = 35/386 (9%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRG--IRDFQGMSDISQEVRH 62 +K SL M ELE + G H R + +W+ +Y G + + +++E Sbjct: 71 RKVSLKDMTFPELERWVESHG----HKASRAAMLWRHLYGNGKWVESPAVIPRLNKEFVS 126 Query: 63 LLNQHFSII-YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSS 120 LL + ++ D + DGTRK L F G VE TV IP + R T+CVSS Sbjct: 127 LLEERAEFAPNLQLRDVHTARDGTRK--LVFFLEEYGASVE--TVVIPGPRGRVTVCVSS 182 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q+GC++ C FC+T L NL+ +I+ Q+++A ++ G ++ Sbjct: 183 QIGCAMNCQFCFTAKMGLRGNLSTAQIVEQLVVASRIVSKDLG--------------HVT 228 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+V MGMGEPL N D+V ++ I + GL S R++T+STSG VP I + LA Sbjct: 229 NVVFMGMGEPLHNIDSVIRAAEIMVNDKGLHLSPRKVTISTSGLVPQIRKFCRSSECALA 288 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACR-----HYPGLSNARRITFEYVMLKGINDS 295 +SL+A ++D+R+ ++PINRKY + L+D + H PG S + EYVMLK +NDS Sbjct: 289 VSLNATTDDIRDQIMPINRKYNIRTLLDCVKEEMITHRPGES----VFLEYVMLKNVNDS 344 Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 DA LI+++K IP KINLI FN PG + + +++ F + + +G IR RG Sbjct: 345 EEDATRLIELVKDIPCKINLIMFNSHPGSAFEPTPLVEVLRFRDRVADAGLVVHIRNSRG 404 Query: 356 LDILAACGQLKSLSKRIPKVPRQEMQ 381 D ACGQL ++ R P+ +QEMQ Sbjct: 405 DDEKMACGQLGTVLPRSPRRRKQEMQ 430 >gi|194333982|ref|YP_002015842.1| radical SAM enzyme, Cfr family [Prosthecochloris aestuarii DSM 271] gi|254807193|sp|B4S808|RLMN_PROA2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|194311800|gb|ACF46195.1| radical SAM enzyme, Cfr family [Prosthecochloris aestuarii DSM 271] Length = 359 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 135/378 (35%), Positives = 204/378 (53%), Gaps = 35/378 (9%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+++ R+ELEE + IG P R R +Q+ +W+Y DF M+ IS+ +R L+ Sbjct: 4 KQNIKRYSRKELEELMQSIGEP----RFRAAQLHRWLYSDRASDFHEMTTISKSLRETLD 59 Query: 66 QHF-----SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 + + S+ + V++ + TRK+L++ + +ETV IP + R T+CVS+ Sbjct: 60 RKYFLPQCSMSSTQCVEDSSADSTTRKFLVQ-----LHDQEAVETVLIPAEGRNTVCVST 114 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC L CSFC TG RNL A EI QV L + L D GC ++ Sbjct: 115 QVGCPLHCSFCATGYMGFTRNLNAAEIAEQVFLVQDYL-DAIGC------------GAVT 161 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSM-GLSFSKRRITLSTSGFVPNI---ARVGEEIG 236 NIV MGMGEPL + V +S+ I SD+ L S+++ITLST G +P I AR G + Sbjct: 162 NIVYMGMGEPLLALEEVIESVGILSDTTYRLHISQKKITLSTVGLLPEIGMLARSG--LT 219 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 LAISLH+ + R L+P R YPL+ L Y + +T Y++LK IND+ Sbjct: 220 TNLAISLHSADQETRASLMPSARDYPLKELRKTLIQYTS-ETGQPVTLVYMLLKEINDTQ 278 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 DAL L+++ + KINLI +NP ++ + ++ F + +G + +R G Sbjct: 279 EDALKLVRLARSFLCKINLIDYNPIVNIKFDSAGEQRKNIFIRTLVDAGLNVTVRKSHGS 338 Query: 357 DILAACGQLKSLSKRIPK 374 I AACGQL +++K++P+ Sbjct: 339 SINAACGQL-AINKKLPE 355 >gi|317472521|ref|ZP_07931841.1| cfr family radical SAM enzyme [Anaerostipes sp. 3_2_56FAA] gi|316899998|gb|EFV21992.1| cfr family radical SAM enzyme [Anaerostipes sp. 3_2_56FAA] Length = 354 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 123/376 (32%), Positives = 207/376 (55%), Gaps = 31/376 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 L M EELE A+ ++G + R QI++W + R M+++ + ++ L + Sbjct: 3 DLKSMTLEELELAVKELG----EKKFRAKQIFEWFHKRLASSLDEMNNLPKNLKEKLQEK 58 Query: 68 FSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + + V+ +S DGTRK+L + + IE+V + K ++C+SSQ GC + Sbjct: 59 YEAAELKEVETYVSRIDGTRKYLFQ-----LNDGNMIESVLMKYKHGNSVCISSQAGCRM 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC + L RNL E+L Q+ + G ++SN+V+MG Sbjct: 114 GCRFCASTLGGLDRNLLPSEMLGQIYY-----------------IQKDTGERVSNVVVMG 156 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 GEPL N++N+ + + + +D GL+ S+R +T+ST G VP I + +E + + LAISLHA Sbjct: 157 TGEPLDNYENLLRFIRLLTDEKGLNLSQRNLTVSTCGLVPKIRELADEKLQMTLAISLHA 216 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++R L+P+ +Y +E L+ AC++Y + RRITFEY ++ +NDSP++A L + Sbjct: 217 SNDEMRKSLMPVANQYSMEDLLAACKYYFDRT-GRRITFEYSLVAEVNDSPQNAKELCRF 275 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L G P +NLIP NP ++ S + + F ++++ + IR G DI AACGQL Sbjct: 276 LGGFPCHVNLIPVNPIKERDFRQSMPEFVNDFKNILEKNRVNVTIRREMGRDINAACGQL 335 Query: 366 KSLSKRIPKVPRQEMQ 381 + K++ V +QE++ Sbjct: 336 R--RKKLNSVEKQEIR 349 >gi|81300567|ref|YP_400775.1| ribosomal RNA large subunit methyltransferase N [Synechococcus elongatus PCC 7942] gi|123769224|sp|Q31MD1|RLMN_SYNE7 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|81169448|gb|ABB57788.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942] Length = 361 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 128/366 (34%), Positives = 197/366 (53%), Gaps = 37/366 (10%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+G EL++ ++ G P R Q+++W+Y R I + +S + R L Q Sbjct: 17 LLGRSLPELQDWVVAQGQPS----YRAKQLYQWLYERSIHNLAEISVFPKAWRQSL-QAV 71 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 + +IVD +S GT K+LLR I IE V IP R T+CVSSQ+GC++ C Sbjct: 72 PVGRSQIVDRSVSPSGTIKYLLRLHDGEI-----IEAVGIPSGDRLTVCVSSQLGCAMAC 126 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG R+L EI+ QVL + ED + +++SNIV MGMG Sbjct: 127 DFCATGKGGFRRHLAPHEIIDQVLTVQ---------EDWQ--------QRVSNIVFMGMG 169 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-------IGVMLAI 241 EPL N D V ++ + +G+ +R IT+ST G +I R+ E + LA+ Sbjct: 170 EPLLNLDAVLAAIRCLNQDIGIG--QRGITVSTVGIPGHIRRLAETKRVGDRPLQFTLAV 227 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA + +R+ L+P +R YP+ L+ CR Y ++ RR+TFEY++L G+ND P A Sbjct: 228 SLHAPNQAIRDRLIPSSRHYPITDLLQECRDYVQIT-GRRVTFEYILLAGLNDQPEQAEQ 286 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++L+G + +NLIP+NP EY + + F++ +++ + +R +GL AA Sbjct: 287 LAQLLRGFQSHVNLIPYNPIDEVEYQRPSKARVDAFADALRQQRVAVTVRWSKGLGADAA 346 Query: 362 CGQLKS 367 CGQL++ Sbjct: 347 CGQLRA 352 >gi|34763242|ref|ZP_00144204.1| Radical SAM family enzyme [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887095|gb|EAA24204.1| Radical SAM family enzyme [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 358 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 132/376 (35%), Positives = 205/376 (54%), Gaps = 33/376 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +++ + +EEL E L+ +G+ + + + +++ W++ + R F M+++S + R +L Sbjct: 4 EKINILNLTQEELTELLVSLGLKKFYGK----EVFIWLHKKITRSFDEMTNLSLKDREIL 59 Query: 65 NQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLC 117 + I + ++ ++S D T K+L GG IETV + K R TLC Sbjct: 60 KEKTYIPFFNLLKYQVSKIDKTEKFLFELED---GGT--IETVLLRHKDSKNREIRNTLC 114 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 VSSQVGC + CSFC TG +RNL+ EIL Q+ + L G Sbjct: 115 VSSQVGCPVKCSFCATGQSGYMRNLSVSEILNQIYIVERRL--------------RKKGE 160 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIG 236 ++N+V MGMGEPL N DN+ KSLSI S+ G++ SKR+IT+STSG V I ++ ++I Sbjct: 161 TLNNLVFMGMGEPLLNIDNLAKSLSIISNENGVNISKRKITISTSGVVSGIEKILLDKIP 220 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 + LAISLH+ N+ R+ ++P+N+ +PLE L Y + RRITFEY+++ N S Sbjct: 221 IELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLVEYQKQT-KRRITFEYILIDNFNISE 279 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRG 355 DA L + +NLIP+N G E+ K I F +K + +R +G Sbjct: 280 TDANALADFIHQFDHVVNLIPYNEVEGVEHTRPSVKKIDKFYNYLKNIRKVNVTLRQEKG 339 Query: 356 LDILAACGQLKSLSKR 371 DI ACGQL+ +K+ Sbjct: 340 SDIDGACGQLRQRNKK 355 >gi|109946741|ref|YP_663969.1| ribosomal RNA large subunit methyltransferase N [Helicobacter acinonychis str. Sheeba] gi|123362803|sp|Q17ZF6|RLMN_HELAH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|109713962|emb|CAJ98970.1| conserved hypothetical protein [Helicobacter acinonychis str. Sheeba] Length = 353 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 128/346 (36%), Positives = 191/346 (55%), Gaps = 29/346 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R Q++ W+Y + F+ M ++ S++ L Q F + EI S DG++K+L + Sbjct: 21 FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIASLEQEFVLRTIEITHVSHSVDGSKKYLFK 80 Query: 92 -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141 F A + ++ ET I E + T+CVS Q+GC + CSFC+T VRN Sbjct: 81 SLKDNHTFEAVFLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGFVRN 140 Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 L A EI+ Q LL + E +P K NIV MGMGEPL N D V K++ Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKALNIVFMGMGEPLNNLDEVCKAI 186 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRK 260 I + G+ S +RIT+STSG I + E+ +GV LAISLHAV + R+ L+P+N+K Sbjct: 187 EIFN--TGMQISPKRITISTSGVADKIPILAEKNLGVQLAISLHAVDDKTRSSLIPLNKK 244 Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 Y +E +++ + +P L +R+ FEY+++K +NDS A L+K+L GI +K+NLI FNP Sbjct: 245 YNIECVLNEVKKWP-LEQRKRVMFEYLLIKNLNDSLNCAKKLLKLLNGIKSKVNLILFNP 303 Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 G ++ + F++ + G IR + LDI AACGQL+ Sbjct: 304 HEGSKFERPSLESARMFADFLNSKGLLCTIRESKALDIEAACGQLR 349 >gi|15805960|ref|NP_294660.1| ribosomal RNA large subunit methyltransferase N [Deinococcus radiodurans R1] gi|81624900|sp|Q9RVT6|RLMN_DEIRA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|6458660|gb|AAF10513.1|AE001946_5 conserved hypothetical protein [Deinococcus radiodurans R1] Length = 346 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 118/335 (35%), Positives = 175/335 (52%), Gaps = 22/335 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +W++V+G+ F M+++ +R L + + ++ S DG+ K+L Sbjct: 17 FRRKQLLEWVFVQGVGTFDAMTNLPAGLRAELESEYQLNPFRDIETVRSHDGSVKYLF-- 74 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + ++E VY+P R T+CVS+ VGC C+FC TG RNLT EI+ QVL Sbjct: 75 ---TLNDGRQMEAVYMPYLDRKTICVSTMVGCPARCAFCATGKMGFGRNLTPGEIVGQVL 131 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 G P R+I N+V MGMGE L N++N + + L Sbjct: 132 AVAGGEGISP--------------REIRNLVFMGMGEALLNYENSMAAARVLLHPDALGM 177 Query: 213 SKRRITLSTSGFVPNIARVGEE--IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 SKRR+TLST G I R+ EE +G+ LAISLHA + R ++P +E ++ A Sbjct: 178 SKRRVTLSTVGIAKGIRRLAEEDDLGIKLAISLHAPDEETRQQIIPTGAANSIEEIMAAA 237 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 R Y ++ RR+T EY ML+G+ND A L L G+ + +NLIP NPW G +++ S Sbjct: 238 RDYQAVT-GRRVTMEYTMLRGVNDHLWQAELLADRLDGLVSHVNLIPMNPWDGSDFVSSS 296 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 ++ I F + ++ G +R RG D AACGQL Sbjct: 297 EEQIQAFYDALQDRGVDVSVRRSRGKDAGAACGQL 331 >gi|298735612|ref|YP_003728137.1| ribosomal RNA large subunit methyltransferase N [Helicobacter pylori B8] gi|298354801|emb|CBI65673.1| Ribosomal RNA large subunit methyltransferase N [Helicobacter pylori B8] Length = 357 Score = 207 bits (528), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 130/354 (36%), Positives = 196/354 (55%), Gaps = 31/354 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R Q++ W+Y + F+ M ++ S++ L + F++ EI + S DG++K+L + Sbjct: 21 FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREFTLRTIEIAHVRKSVDGSKKYLFK 80 Query: 92 -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141 F A + ++ ET + E + T+CVS Q+GC + CSFC+T VRN Sbjct: 81 SLKDNHTFEAVLLKMKDKKIDGETNAVLEGEKYTVCVSCQIGCQVGCSFCFTQKGGFVRN 140 Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 L A EI+ Q LL + E +P K NIV MGMGEPL N D V K++ Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKAFNIVFMGMGEPLNNLDEVCKAI 186 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260 I + G+ S +RIT+STSG I G+ +GV LAISLHAV + R+ L+P+N+K Sbjct: 187 EIFN--TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244 Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 Y +E +++ R +P L +R+ FEY+++K +ND A L+K+L GI +K+NLI FNP Sbjct: 245 YNIECVLNEVRKWP-LEQRKRVMFEYLLIKDLNDGLDCAKKLLKLLNGIKSKVNLILFNP 303 Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372 G ++ + F++ + G IR + LDI AACGQL K LS++I Sbjct: 304 HEGSKFERPSLESARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQI 357 >gi|327441109|dbj|BAK17474.1| predicted Fe-S-cluster redox enzyme [Solibacillus silvestris StLB046] Length = 382 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 116/336 (34%), Positives = 188/336 (55%), Gaps = 21/336 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R +QI++W+Y + ++ F+ MS++ + +R L F++ + ++ S DGT K+L + Sbjct: 59 FRAAQIYEWLYEKRVQTFEEMSNLPKALREKLEAEFALTTLSTIIKQESKDGTIKFLFQ- 117 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + IETV + ++CV++QVGC + C+FC + L R+L A EI+ QV+ Sbjct: 118 ----LQDGYSIETVLMRHDYGNSICVTTQVGCRIGCTFCASTLGGLKRHLMAGEIVEQVV 173 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 + L + ++S+IV+MG+GEP N+D + L I +D GL+ Sbjct: 174 KVQQQLDE--------------TEERVSSIVIMGIGEPFDNYDAMMNFLKIMNDDKGLNI 219 Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 R IT+STSG VP I +E + + A+SLHA + + R L+PI + Y LE L++A + Sbjct: 220 GARHITVSTSGIVPKIYEFADEGMQINFAVSLHAPNQEARQKLMPIAKAYKLEELMEAVK 279 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 +Y RR+TFEY ++ G ND+ A+ L K++K I +NLIP N P +Y+ + + Sbjct: 280 YYTK-KTGRRVTFEYGLMSGQNDTEEVAMELAKLIKNIKCHVNLIPINYVPERDYIRTSR 338 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 I F +K G + IR +G DI AACGQL++ Sbjct: 339 SKIFAFERTLKEQGINVTIRREQGADIAAACGQLRA 374 >gi|302341935|ref|YP_003806464.1| radical SAM enzyme, Cfr family [Desulfarculus baarsii DSM 2075] gi|301638548|gb|ADK83870.1| radical SAM enzyme, Cfr family [Desulfarculus baarsii DSM 2075] Length = 359 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 131/363 (36%), Positives = 185/363 (50%), Gaps = 29/363 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K L + E+L L +G R Q+ +W++ G+ D M+ +S+ +R L Sbjct: 3 QKPDLRDLTAEQLARLLADLG----EKPFRARQVSQWLHGHGVDDIADMTSLSKALRAKL 58 Query: 65 NQ--HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + + + P V + S DGTRK L + IE+V +PE TLCVS+QV Sbjct: 59 SAVGRLTAMGPAKVLQ--SADGTRKLLF-----LLEDGQAIESVLMPEDGHHTLCVSTQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC C FC T + L RNL EIL QVL AR L +F R ++N+ Sbjct: 112 GCRQGCRFCATASLGLRRNLRPAEILGQVLAARRLCDEF---------------RPLTNL 156 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 V MGMGEPL N DNV +L GL S+RR+T+ST G V + + LAIS Sbjct: 157 VFMGMGEPLDNLDNVIVALGHILGEHGLQMSQRRVTVSTVGLVDRLPLLAAASPCALAIS 216 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 L+A + +R ++P+ +++ LE L A YP L RR+T EYV+L G+ND P A L Sbjct: 217 LNAPNEHIRRQIMPVTKRFGLEALRRAIVDYP-LKPTRRVTLEYVLLGGVNDRPEHAREL 275 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + KG+P K+NLI FNP + + + F + ++ +R RG DI AAC Sbjct: 276 ARWAKGLPVKVNLIAFNPHQAGPFQAPEAAAVEEFQNVLIEGHVTALLRRSRGQDIAAAC 335 Query: 363 GQL 365 GQL Sbjct: 336 GQL 338 >gi|237739801|ref|ZP_04570282.1| radical SAM domain-containing protein [Fusobacterium sp. 2_1_31] gi|229423409|gb|EEO38456.1| radical SAM domain-containing protein [Fusobacterium sp. 2_1_31] Length = 358 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 130/376 (34%), Positives = 204/376 (54%), Gaps = 33/376 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +++ + +EEL E L+ +G+ + + + +++ W++ + IR+F M+++S + R +L Sbjct: 4 EKVNILNLTQEELTEFLVSLGLKKFYGK----EVFIWLHKKIIRNFDDMTNLSLKDREIL 59 Query: 65 NQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLC 117 ++ I + ++ ++S D T K+L + IETV + + R TLC Sbjct: 60 KENAYIPFFNLLKHQVSKLDKTEKFLFELEDKGT-----IETVLLRHRDSKNKEIRNTLC 114 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 VSSQVGC + CSFC TG +RNL+ EIL QV L Sbjct: 115 VSSQVGCPVKCSFCATGQGGYMRNLSVSEILNQVYTVERRL--------------RKKDE 160 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIG 236 ++N+V MGMGEPL N DN+ +LSI S+ G++ SKR+IT+STSG V I ++ E+I Sbjct: 161 SLNNLVFMGMGEPLLNIDNLSTALSIISNENGINISKRKITISTSGIVSGIEKILLEKIP 220 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 + LA+SLH+ ND R+ ++PIN+ +PLE L Y + RRITFEY+++ N S Sbjct: 221 IELAVSLHSAINDKRDQIIPINKNFPLEDLSAVLVEYQKQT-KRRITFEYILIDNFNISE 279 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRG 355 DA L + +NLIP+N G E+ K I F +K + +R +G Sbjct: 280 ADANALADFIHQFDHVVNLIPYNEVEGVEHKRPSMKKIDRFYNYLKNVRKVNVTLRQEKG 339 Query: 356 LDILAACGQLKSLSKR 371 DI ACGQL+ +K+ Sbjct: 340 SDIDGACGQLRQRNKK 355 >gi|260654398|ref|ZP_05859888.1| radical SAM enzyme, Cfr family [Jonquetella anthropi E3_33 E1] gi|260631031|gb|EEX49225.1| radical SAM enzyme, Cfr family [Jonquetella anthropi E3_33 E1] Length = 352 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 119/339 (35%), Positives = 191/339 (56%), Gaps = 27/339 (7%) Query: 35 TSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPA 94 QI +WIY + + D+ GM+++S+++R L + SI+ P +V+ +IS DGT+K+L Sbjct: 30 ADQICQWIYQKKVFDWNGMTNLSKDLRAALAERVSIVPPVLVERQISADGTKKYLWE--- 86 Query: 95 RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLA 154 + +E+V + + T C+SSQVGC L C+FC TG RN+TA EI Sbjct: 87 --LSDGARVESVLMDHGNHLTACLSSQVGCPLKCAFCATGRGGFERNMTAGEI------- 137 Query: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSK 214 +G F E +G+ I N+V MGMGEPL NF NV++++ + Sbjct: 138 ---VGHFLAME-------ADLGKPIGNVVFMGMGEPLLNFVNVERAIRCLLEPKMRGMGV 187 Query: 215 RRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY 273 R +T+ST+G I ++ + +GV L +SLHA +++LR+ L+PIN +YPL ++DA +++ Sbjct: 188 RHVTISTAGVADGIRKLADSGLGVYLCLSLHAPNDELRSRLMPINERYPLPQVLDALKYW 247 Query: 274 PGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP-WPGCEYLCSDQK 332 G + R+T EYV++KG+ D P A L + + +NLIP+NP P + + Sbjct: 248 QGKTGV-RLTVEYVLIKGVTDLPELAYELPTLFSDLQTYVNLIPYNPVIPSFSRPSASR- 305 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 I F++ ++ G +R +G DI AACGQL++ R Sbjct: 306 -IEPFAKILRELGMEVEVRREKGTDIDAACGQLRAKKDR 343 >gi|160893331|ref|ZP_02074118.1| hypothetical protein CLOL250_00880 [Clostridium sp. L2-50] gi|156865023|gb|EDO58454.1| hypothetical protein CLOL250_00880 [Clostridium sp. L2-50] Length = 361 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 124/365 (33%), Positives = 198/365 (54%), Gaps = 30/365 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE-VRH 62 +KK + MM +EL + +G P R QI++W++ +GI + M+++ ++ + Sbjct: 15 IKKLDIRSMMFDELAVWVKSVGQPA----FRAKQIFEWVHAKGIAHAEDMTNVPKKLIEE 70 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + QH + E+ DGT K+L R G V +E+V + K ++C+SSQV Sbjct: 71 IKKQHMYGV-EEVTRLVSKQDGTNKFLFRLQ----DGNV-LESVLMRYKHGNSVCISSQV 124 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC + L+RNL A E+L Q+ + G+ ++SNI Sbjct: 125 GCRMGCRFCASTIGGLIRNLEASEMLDQIYAIERITGE-----------------RVSNI 167 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 V+MG GEPL N+DN+ + + I +D G + S+R IT+S+ G VP I R+ +E + + A+ Sbjct: 168 VVMGTGEPLDNYDNLIRFIRIINDEQGKNISQRNITVSSCGLVPQIKRLADEGLSITFAL 227 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH+ +++ R L+PI KY + L+D CR+Y RR+TFEY ++K ND+P A Sbjct: 228 SLHSPTDEDRRKLLPIANKYSIAELMDVCRYYFE-KTGRRVTFEYSLVKDENDTPEHAYK 286 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++LK + +NLIP NP +Y S + F +++ + IR G DI AA Sbjct: 287 LAELLKNMHGHVNLIPVNPIKERKYCRSLNDSVEKFKYILEKKDINVTIRRSMGRDIDAA 346 Query: 362 CGQLK 366 CGQL+ Sbjct: 347 CGQLR 351 >gi|298372852|ref|ZP_06982842.1| radical SAM enzyme, Cfr family [Bacteroidetes oral taxon 274 str. F0058] gi|298275756|gb|EFI17307.1| radical SAM enzyme, Cfr family [Bacteroidetes oral taxon 274 str. F0058] Length = 342 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 126/364 (34%), Positives = 190/364 (52%), Gaps = 30/364 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K+S+ + L+E + +P+ R Q+ +WIY + F+ M++IS++ L Sbjct: 1 MSKQSITDLNLTRLQEEFASLSLPRYTAR----QVTEWIYKKRSARFEDMTNISKKNLSL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +HF S DGT+K+L F R +IETV IP+ R TLCVS QVG Sbjct: 57 LAEHFDTGRQPYSMATTSADGTKKYL--FSTR----HGDIETVMIPDDDRRTLCVSCQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C ++C FC TG NL+A EI+ QVL + I+NIV Sbjct: 111 CRMSCRFCMTGRCGFAGNLSAGEIINQVLSVDE-------------------AKNITNIV 151 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MGMGEP N V +++ I + GL++S +RIT+STSG I + LAISL Sbjct: 152 FMGMGEPFDNLGEVLRAIEILTSEWGLAYSPKRITVSTSGLRKGIETFLDNTQCHLAISL 211 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H D R ++P+ +E ++ Y ++ RR++FEY++ +GINDS R A ++ Sbjct: 212 HNPFADERAKMMPVEHSDHIEEVVTLLHRYD-FAHQRRLSFEYIVFEGINDSVRHAEGIV 270 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++L+G+ ++NLI F+ + D+ + F + + R G S IR RG DI AACG Sbjct: 271 RLLRGLFCRVNLIRFHEVADLDLRSPDKNKMEHFRDYLNRHGIISTIRRSRGEDIEAACG 330 Query: 364 QLKS 367 QLK+ Sbjct: 331 QLKN 334 >gi|325280884|ref|YP_004253426.1| Ribosomal RNA large subunit methyltransferase N [Odoribacter splanchnicus DSM 20712] gi|324312693|gb|ADY33246.1| Ribosomal RNA large subunit methyltransferase N [Odoribacter splanchnicus DSM 20712] Length = 351 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 132/356 (37%), Positives = 190/356 (53%), Gaps = 25/356 (7%) Query: 13 MREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH--FSI 70 +REE L Q R QIW+WI+ RG+ DF MS++S+ R LL++H F Sbjct: 10 IREESLRDLSDFLTAQGEKAFRAKQIWQWIWQRGVTDFAEMSNLSKATRELLSRHYFFDS 69 Query: 71 IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130 ++P+ V + + DGT K R I +E+V IP + T+CVSSQVGC L C F Sbjct: 70 LFPQQV--QTASDGTEKTAWRLTDGEI-----VESVLIPGNQKFTVCVSSQVGCQLGCKF 122 Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 C TGT RNLTA EI QV+ A+ + G+ +SNIV MGMGEP Sbjct: 123 CATGTLGFKRNLTAGEIFEQVVRAQ--------------QAAEAQGQPLSNIVFMGMGEP 168 Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSND 249 L N++ V +++ + GL+ S RIT+ST+G I ++ ++ + LA+SLHA Sbjct: 169 LLNYEQVLRAIERITAQDGLAMSPYRITVSTAGIPEKIRQLADDGVRFNLALSLHAAKET 228 Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309 R L+P+N+ YPL + + +++ + R TFEY++LK INDS DA L + Sbjct: 229 TRTFLMPVNKAYPLSEIAGSLKYFVEKTGTRP-TFEYLLLKDINDSLEDAKALALYCRQF 287 Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 P KIN+I +N G + S K+ F ++ +R +G DI AACGQL Sbjct: 288 PIKINIIEYNNVEGSGFHHSPDKNRDAFIRFLEGCNMVVNVRRSKGKDIDAACGQL 343 >gi|325108721|ref|YP_004269789.1| 23S rRNA m(2)A-2503 methyltransferase [Planctomyces brasiliensis DSM 5305] gi|324968989|gb|ADY59767.1| 23S rRNA m(2)A-2503 methyltransferase [Planctomyces brasiliensis DSM 5305] Length = 358 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 125/345 (36%), Positives = 185/345 (53%), Gaps = 27/345 (7%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R R QI++WIY R + ++ M+D+ ++R L + FS+ E+ ++ D T K LL+ Sbjct: 28 RFRAEQIFRWIYARRAQSWEEMNDLPAKLRTALAEQFSLFNSEVETHSVATDRTEKLLLK 87 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 G +E V + E R T+C+S+QVGC + C FC +G L RNL EIL QV Sbjct: 88 LR----DGEF-VECVLMREPDRNTICISTQVGCGMGCVFCASGLAGLTRNLQTAEILEQV 142 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 L D K++N+V+MGMGEPL N + +L ++GL+ Sbjct: 143 ARLDRLQSD---------------DEKLTNVVVMGMGEPLANLKQLLPALERMQHALGLN 187 Query: 212 FSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 RRIT+ST G I ++ LA+SLHA ++ LR+ +VP+N K L+ ++ A Sbjct: 188 LGVRRITVSTVGLPDRIRQLAAHGKPYNLAVSLHAPNDKLRDEIVPVNDKIGLDAVLSAA 247 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 Y + RR+T+EYV+LKGINDS A L ++L G A +NLIP N S Sbjct: 248 DEYFE-TTGRRVTYEYVLLKGINDSLEHAHELAEVLAGRNAHVNLIPMNAVSLLSIGGSS 306 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKV 375 + F+ ++++G ++ IR +G DI AACGQL R+PKV Sbjct: 307 PQQARQFAAILEQAGTAATIRKRKGADIDAACGQL-----RLPKV 346 >gi|15895003|ref|NP_348352.1| Fe-S-cluster redox protein [Clostridium acetobutylicum ATCC 824] gi|81620134|sp|Q97IC4|RLMN_CLOAB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|15024693|gb|AAK79692.1|AE007682_2 Predicted Fe-S-cluster redox enzyme, YLON B.subtilis ortholog [Clostridium acetobutylicum ATCC 824] gi|325509140|gb|ADZ20776.1| Fe-S-cluster redox enzyme [Clostridium acetobutylicum EA 2018] Length = 345 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 131/362 (36%), Positives = 189/362 (52%), Gaps = 30/362 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 E+++ EL++ + K G R Q + WIY G DF+ M ++ Q R L + Sbjct: 2 ENILDYNEAELKQWMDKNG----EKTFRAKQFFDWIY-NGTFDFKDMKNLPQSTRERLEK 56 Query: 67 HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +F I P +V S G T K+L R+ I IE V + ++C+S+QVGC Sbjct: 57 NFYIGMPSVVKRLNSKKGDTVKFLFRYNDGNI-----IECVVMKYDYGNSICISTQVGCR 111 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + CSFC + VR+LT+ EIL Q+L A+ +G +ISNIV+M Sbjct: 112 MGCSFCASTIGGRVRDLTSGEILAQILKAQ-----------------KEIGERISNIVLM 154 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLH 244 G GEPL N+DNV K + I + GL+ +R ITLST G VP I + E + + LAISLH Sbjct: 155 GSGEPLDNYDNVIKFIRIVNSEKGLNIGQRHITLSTCGIVPRIYDLMKENLQITLAISLH 214 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++ R ++PI +Y + +ID C+ Y + RRITFEY ++K +ND A L + Sbjct: 215 ASDDETRKKIMPIANRYSISEIIDCCKKYSDFT-GRRITFEYSLVKDVNDDKESAKKLGE 273 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L G+ +NLIP N Y + I F + + + S IR G DI AACGQ Sbjct: 274 LLSGMLCHVNLIPVNTVNETSYEKPESSKIKKFCDTLLKYKIESTIRKEMGADINAACGQ 333 Query: 365 LK 366 L+ Sbjct: 334 LR 335 >gi|89098703|ref|ZP_01171585.1| hypothetical protein B14911_00900 [Bacillus sp. NRRL B-14911] gi|89086665|gb|EAR65784.1| hypothetical protein B14911_00900 [Bacillus sp. NRRL B-14911] Length = 362 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 114/340 (33%), Positives = 194/340 (57%), Gaps = 21/340 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R +QI++W+Y + + F+ M+++S+ +R LN+ F++ + + ++ S DGT K+L Sbjct: 39 FRAAQIFEWLYQKRVASFEDMTNLSKALRDKLNETFTLTTLKTLIQQTSSDGTIKFLFE- 97 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + IETV + + ++CV++QVGC + C+FC + L RNL A EI+ QV+ Sbjct: 98 ----LHDGYSIETVLMRHEYGNSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVAQVV 153 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 + L + ++S++V+MG+GEP N+D++ L I + GL+ Sbjct: 154 KVQQALDE--------------TDERVSSVVIMGIGEPFDNYDHMMSFLRIINHDDGLNI 199 Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 R IT+STSG +P I + +E + + A+SLHA + ++R+ L+PINR Y L L++A R Sbjct: 200 GARHITVSTSGIIPKIYKFADENMQINFAVSLHAPNTEIRSRLMPINRAYKLPDLMEAIR 259 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 +Y RR++FEY + +ND A L ++KG+ +NLIP N P +Y+ + + Sbjct: 260 YYVD-KTGRRVSFEYGLFGSVNDQVEHAEELASLIKGLKCHVNLIPVNYVPERDYVRTPK 318 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 I F + +K G + IR +G DI AACGQL++ ++ Sbjct: 319 DQIFAFEKALKNRGVNVTIRREQGHDIDAACGQLRAKERK 358 >gi|116073729|ref|ZP_01470991.1| hypothetical protein RS9916_34802 [Synechococcus sp. RS9916] gi|116069034|gb|EAU74786.1| hypothetical protein RS9916_34802 [Synechococcus sp. RS9916] Length = 346 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 131/372 (35%), Positives = 194/372 (52%), Gaps = 39/372 (10%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L+G +LE+ + Q R Q+ W+Y +G RD G++ + + R L Q Sbjct: 4 ALLGRSAADLEQ----WAVAQGQSSFRGRQLHDWLYAKGARDLNGITVLPKVWRAAL-QE 58 Query: 68 FSIIYPEIVDE--KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++ + ++ ++ D T K LL IETV IP R T+CVSSQVGC Sbjct: 59 QGVVVGRLQEQLRSVASDATTKLLL-----GTEDAETIETVGIPTDQRLTVCVSSQVGCP 113 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG L R+L EI+ QVL R ++ R+ S++V M Sbjct: 114 MACRFCATGKGGLQRSLATHEIVDQVLSIREVMD-----------------RRPSHVVFM 156 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF---VPNIARVG-EEIG---VM 238 GMGEPL N D V +++ +D +G+ +RRIT+ST G +P +A + E +G Sbjct: 157 GMGEPLLNIDAVLEAIRCFNDDLGIG--QRRITVSTVGVPRTLPKLAELAMERLGRAQFT 214 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLHA + LR L+P YP E L+D CRHY ++ RR++FEY++L G+ND P Sbjct: 215 LAVSLHAPNQQLREELIPTAHAYPFEALLDDCRHYLAITG-RRVSFEYILLGGLNDHPAH 273 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L + G + +NLI +NP E+ + I F ++R G + +R RGLD Sbjct: 274 AEELADRVGGFQSHVNLIAYNPIEEEEFQRPSAERIAGFRRVLERRGVAVSLRASRGLDQ 333 Query: 359 LAACGQLKSLSK 370 AACGQL+ +K Sbjct: 334 NAACGQLRRQNK 345 >gi|163848485|ref|YP_001636529.1| ribosomal RNA large subunit methyltransferase N [Chloroflexus aurantiacus J-10-fl] gi|222526414|ref|YP_002570885.1| ribosomal RNA large subunit methyltransferase N [Chloroflexus sp. Y-400-fl] gi|205829697|sp|A9WFY6|RLMN_CHLAA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|163669774|gb|ABY36140.1| radical SAM enzyme, Cfr family [Chloroflexus aurantiacus J-10-fl] gi|222450293|gb|ACM54559.1| radical SAM enzyme, Cfr family [Chloroflexus sp. Y-400-fl] Length = 376 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 129/359 (35%), Positives = 196/359 (54%), Gaps = 30/359 (8%) Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ-HFSIIYPE 74 EL E L G P R Q+++ +YV R M+D+ +R L + FS + E Sbjct: 17 ELTELLQSWGEPA----FRARQLYRHLYVNLARQVDQMTDLPLALRSRLAEIPFSTLRCE 72 Query: 75 IVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133 V +I +G TRK L R P + +ETV + R T+CVS+Q GC + C FC T Sbjct: 73 QV--QIGDNGMTRKALFRLPDGAV-----VETVLMVYPDRSTVCVSTQAGCGMGCVFCAT 125 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 G L+RNL++ EI+ Q + A +++ M + ++SN+V MGMGEP N Sbjct: 126 GQLGLLRNLSSGEIVAQAIWA---------SQELRAMGMAGPTGRVSNLVFMGMGEPFAN 176 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252 +D +++ D G + R +T+ST G V I R+ E + + LAISLHA + LR+ Sbjct: 177 YDRWWQAVERLHDPQGFNLGARSMTVSTVGLVKGIERLANERLPINLAISLHAPDDALRS 236 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312 L+P+NR+YP+ L+ A R+Y + RR++FEYV+L+G ND P A+ L ++L+ + Sbjct: 237 ELMPVNRRYPIADLMAATRNYIAKTR-RRVSFEYVLLQGKNDHPHQAIALARLLRHSAPR 295 Query: 313 ------INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +NLIP+NP PG S+ + + TF + + G +R RG++I AACGQL Sbjct: 296 GPLLFHVNLIPWNPVPGTPLGRSEWERVTTFQQILTDYGIPCTVRVERGVEIAAACGQL 354 >gi|296329385|ref|ZP_06871885.1| cfr family radical SAM enzyme [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153505|gb|EFG94323.1| cfr family radical SAM enzyme [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 358 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 132/376 (35%), Positives = 204/376 (54%), Gaps = 33/376 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +++ + +EEL E L+ +G+ + + + +++ W++ + R F M+++S + R +L Sbjct: 4 EKINILNLTQEELTELLVSLGLKKFYGK----EVFIWLHKKITRSFDEMTNLSLKDREIL 59 Query: 65 NQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLC 117 + I + ++ ++S D T K+L GG IETV + K R TLC Sbjct: 60 KEKTYIPFFNLLKYQVSKIDKTEKFLFELED---GGT--IETVLLRHKDSKNKEIRNTLC 114 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 VSSQVGC + CSFC TG +RNL+ EIL Q+ L G Sbjct: 115 VSSQVGCPVKCSFCATGQSGYMRNLSVSEILNQIYTVERRL--------------RKKGE 160 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIG 236 ++N+V MGMGEPL N DN+ K+LSI S+ G++ SKR+IT+STSG V I ++ ++I Sbjct: 161 NLNNLVFMGMGEPLLNIDNLSKALSIISNENGINISKRKITISTSGVVSGIEKILLDKIP 220 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 + LAISLH+ N+ R+ ++PIN+ +PLE L Y + RRITFEY+++ N S Sbjct: 221 IELAISLHSAINEKRDKIIPINKNFPLEDLSAVLIEYQKQT-KRRITFEYILIDNFNISE 279 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRG 355 DA L + +NLIP+N G E+ K I F +K + +R +G Sbjct: 280 TDANALADFIHQFDHVVNLIPYNEVEGAEHTRPSVKKINKFYNYLKNVRKVNVTLRQEKG 339 Query: 356 LDILAACGQLKSLSKR 371 DI ACGQL+ +K+ Sbjct: 340 SDIDGACGQLRQRNKK 355 >gi|254304122|ref|ZP_04971480.1| hypothetical protein FNP_1792 [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324314|gb|EDK89564.1| hypothetical protein FNP_1792 [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 358 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 132/376 (35%), Positives = 204/376 (54%), Gaps = 33/376 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +++ + +EEL E L+ +G+ + + + +++ W++ + R F M+++S + R +L Sbjct: 4 EKINILNLTQEELTELLVSLGLKKFYGK----EVFIWLHKKIARSFDEMTNLSLKDREIL 59 Query: 65 NQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLC 117 + I + ++ ++S D T K+L GG IETV + K R TLC Sbjct: 60 KEKTYIPFFNLLKYQVSKIDKTEKFLFELED---GGT--IETVLLRHKDSKNKEIRNTLC 114 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 VSSQVGC + CSFC TG +RNL+ EIL QV L G Sbjct: 115 VSSQVGCPVKCSFCATGQSGYMRNLSVSEILNQVYTVERRL--------------RKKGE 160 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIG 236 ++N+V MGMGEPL N DN+ KSLSI S+ G++ SKR+IT+STSG V I ++ ++I Sbjct: 161 TLNNLVFMGMGEPLLNIDNLAKSLSIISNENGVNISKRKITISTSGVVSGIEKILLDKIP 220 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 + LA+SLH+ N+ R+ ++PIN+ +PLE L Y + RR+TFEY+++ N S Sbjct: 221 IELAVSLHSAINEKRDKIIPINKNFPLEDLSAVLVEYQKQT-KRRVTFEYILIDNFNISE 279 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRG 355 DA L + +NLIP+N G E+ K I F +K + +R +G Sbjct: 280 TDANALADFIHQFDHVVNLIPYNEVEGVEHTRPSVKKIDKFYNYLKNVRKVNVTLRQEKG 339 Query: 356 LDILAACGQLKSLSKR 371 DI ACGQL+ +K+ Sbjct: 340 SDIDGACGQLRQRNKK 355 >gi|146299542|ref|YP_001194133.1| radical SAM protein [Flavobacterium johnsoniae UW101] gi|205829760|sp|A5FJ06|RLMN_FLAJO RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|146153960|gb|ABQ04814.1| radical SAM enzyme, Cfr family [Flavobacterium johnsoniae UW101] Length = 349 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 115/334 (34%), Positives = 194/334 (58%), Gaps = 20/334 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R +Q+++W++ +G F+ M+++++ R +L ++F I + ++ + S DGT K +R Sbjct: 28 FRGNQVYEWLWSKGAHSFEDMTNVAKTTRSMLEENFVINHIKVDTMQRSNDGTVKNAVRL 87 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + +E+V IP ++R T CVSSQVGCSL C+FC T K +RNL EI Q++ Sbjct: 88 HDGLV-----VESVLIPTETRTTACVSSQVGCSLDCNFCATARLKRMRNLEPGEIYDQIM 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 D E + + +SNIV MGMGEPL N++NV K++ + + GL Sbjct: 143 AI-----------DKESRLYHN--HPLSNIVFMGMGEPLMNYNNVIKAIDMVTSEEGLGM 189 Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S +RITLSTSG I ++ ++ + LA+SLH+ ++ R ++P ++ +PL+ L +A Sbjct: 190 SPKRITLSTSGIPKMIKKMADDDVKFRLAVSLHSAIDETRAKIMPFSKNFPLKDLREALE 249 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 ++ + ++ +++EYV+ KGIND L+K K +P K+NLI +NP E+ + + Sbjct: 250 YWYRKTKSK-VSYEYVVWKGINDDKASVDALVKFCKYVPCKVNLIEYNPIDDGEFQQASE 308 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + I+ + + ++ G +R RG DI AACGQL Sbjct: 309 ESILAYIKALENIGVVVKVRRSRGKDIDAACGQL 342 >gi|255505596|ref|ZP_05347103.3| radical SAM enzyme, Cfr family [Bryantella formatexigens DSM 14469] gi|255266841|gb|EET60046.1| radical SAM enzyme, Cfr family [Bryantella formatexigens DSM 14469] Length = 354 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 127/365 (34%), Positives = 199/365 (54%), Gaps = 29/365 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + ++ L + EEL+ L +G R QI++W++ + Q M+++ ++R Sbjct: 6 MNRKDLRSLGYEELQRELEALGEKP----FRAKQIYQWLHEKLADGVQEMTNLPAKLRET 61 Query: 64 LNQHFSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L+ + E+VD + DGTRK+L R G V IE+V + ++C+SSQ Sbjct: 62 LDVRYLCSSLEMVDVLESKADGTRKYLFRLQ----DGNV-IESVLMKYHHGNSVCISSQA 116 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC + L R+L E+L Q+ + G ++SN+ Sbjct: 117 GCRMGCRFCASTLGGLTRSLLPGEMLDQIY-----------------KIQKHSGERVSNV 159 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAI 241 V+MG GEPL N++N+ K + + SD GL+ S+R IT+ST G VPNI R+ E++ + LA+ Sbjct: 160 VVMGTGEPLDNYENLVKFIHMLSDEHGLNISQRNITVSTCGIVPNIYRLAAEKLQITLAL 219 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA + + R L+PI RKY L +++ACR Y RR+TFEY ++ G+NDS DA Sbjct: 220 SLHAPTQEKRMELMPIARKYELSEVMEACRAYF-RETGRRLTFEYSLVGGVNDSQEDARE 278 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L +L G+ +NLIP NP ++ S+++ I F +++ G + IR G DI A Sbjct: 279 LAVLLDGLNCHVNLIPVNPIKERSFVQSERRVIADFKTKLEKYGINVTIRREMGRDIGGA 338 Query: 362 CGQLK 366 CGQL+ Sbjct: 339 CGQLR 343 >gi|22299968|ref|NP_683215.1| hypothetical protein tll2425 [Thermosynechococcus elongatus BP-1] gi|81742271|sp|Q8DG98|RLMN_THEEB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|22296153|dbj|BAC09977.1| tll2425 [Thermosynechococcus elongatus BP-1] Length = 337 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 132/360 (36%), Positives = 186/360 (51%), Gaps = 31/360 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+G EL+ + G P R Q+ +W+Y +G R Q ++ ++ R L Sbjct: 3 LLGRSAAELKAWVEAQGQPG----YRGQQLHQWLYRKGARSLQEITVFPKQWRAALAD-V 57 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 I EI + DGT K LL + IETV IP R T+CVSSQVGC + C Sbjct: 58 EIGRSEIRYRHDAQDGTVKLLL-----ALADGETIETVGIPSSDRLTVCVSSQVGCPMAC 112 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG RNL EIL QVL +S +GR++S++V MGMG Sbjct: 113 DFCATGKGGYRRNLACHEILDQVLTIQS-----------------EMGRRVSHVVFMGMG 155 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVS 247 EPL N V ++++ + +G+ +R IT+ST G I R+ + ++ LA+SLHA + Sbjct: 156 EPLLNLPAVLQAITCLNRDIGIG--QRHITISTVGIPQQIQRLAQHQLQTTLAVSLHAPN 213 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 LR L+P + YPL LI CR Y RRITFEY +L G+ND P+ A L ++L+ Sbjct: 214 QALREQLIPSAKHYPLSQLIADCRAYVQ-QTGRRITFEYTVLAGVNDRPQHAEELAQLLR 272 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 G + +NLIP+NP Y + + F ++ G ++ IR RGLD AACGQL+ Sbjct: 273 GFQSHVNLIPYNPIAEAAYQRPTDQHLRQFLSQLQALGVTASIRRSRGLDRQAACGQLRQ 332 >gi|268316491|ref|YP_003290210.1| radical SAM enzyme, Cfr family [Rhodothermus marinus DSM 4252] gi|262334025|gb|ACY47822.1| radical SAM enzyme, Cfr family [Rhodothermus marinus DSM 4252] Length = 364 Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 124/344 (36%), Positives = 187/344 (54%), Gaps = 29/344 (8%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R R Q++KWIY +G + M+D+ + R L + I E V + + D T K L R Sbjct: 28 RYRGRQLFKWIYGKGATSVEQMTDLPRAFRAELARRARITRLEPVRQLTAGDQTVKVLFR 87 Query: 92 FPARCIGGPVEIETVYIPEKS-------RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTA 144 P+ +E+V IP+ R T+CVSSQVGC++ C+FC TG +NLTA Sbjct: 88 LPS-----GRHVESVLIPDFDEETGRVRRLTVCVSSQVGCAMGCAFCATGLMGFQQNLTA 142 Query: 145 EEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIA 204 EI QV + + GR+I+N+V MGMGEPL N+D V +S+++ Sbjct: 143 GEIYDQVW-------------QLNRLAEERFGRRITNVVYMGMGEPLLNYDAVLRSVALL 189 Query: 205 SDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINR--KY 261 +D GL S RRIT+ST G I ++ ++ + LA+SLHA +N R+ ++P+NR + Sbjct: 190 TDRDGLGLSPRRITVSTVGLARRIRQLADDGVRFRLAVSLHAPTNAQRSAIMPVNRNEQT 249 Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPW 321 L+ LI+A R++ + + IT+EY + +G ND P DA L + + P K+NLI +NP Sbjct: 250 DLDDLIEAIRYFEART-GQTITYEYCLFEGFNDRPEDAHRLADLTEQAPGKVNLILYNPV 308 Query: 322 PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 G + ++ + F + G + +R RG DI AACGQL Sbjct: 309 EGLPFRRPSEERLQAFIRVLVDRGVTVTVRRSRGQDINAACGQL 352 >gi|237741553|ref|ZP_04572034.1| radical SAM domain-containing protein [Fusobacterium sp. 4_1_13] gi|229429201|gb|EEO39413.1| radical SAM domain-containing protein [Fusobacterium sp. 4_1_13] Length = 358 Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 131/376 (34%), Positives = 203/376 (53%), Gaps = 33/376 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +++ + +EEL E L+ +G+ + + + +++ W++ + R F M+++S + R +L Sbjct: 4 EKINILNLTQEELTELLVSLGLKKFYGK----EVFIWLHKKITRSFDEMTNLSLKDREIL 59 Query: 65 NQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLC 117 + I + ++ +IS D T K+L + IETV + K R TLC Sbjct: 60 TEKTYIPFFNLLKHQISKIDRTEKFLFELEDKRT-----IETVLLRHKDSKNKEIRNTLC 114 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 VSSQVGC + CSFC TG +RNL+ EIL Q+ L G Sbjct: 115 VSSQVGCPVKCSFCATGQSGYMRNLSVSEILNQIYTVERRL--------------RKKGE 160 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIG 236 ++N+V MGMGEPL N DN+ KSLSI S+ G++ SKR+IT+STSG V I ++ ++I Sbjct: 161 TLNNLVFMGMGEPLLNIDNLAKSLSIISNENGVNISKRKITISTSGVVSGIEKILLDKIP 220 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 + LAISLH+ N+ R+ ++P+N+ +PLE L Y + RRITFEY+++ N S Sbjct: 221 IELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLVEYQKQT-KRRITFEYILIDNFNISE 279 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRG 355 DA L + +NLIP+N G E+ K I F +K + +R +G Sbjct: 280 TDANALADFIHQFDHVVNLIPYNEVEGVEHTRPSVKKIDKFYNYLKNIRKVNVTLRQEKG 339 Query: 356 LDILAACGQLKSLSKR 371 DI ACGQL+ +K+ Sbjct: 340 SDIDGACGQLRQRNKK 355 >gi|291560509|emb|CBL39309.1| 23S rRNA m(2)A-2503 methyltransferase [butyrate-producing bacterium SSC/2] Length = 343 Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 127/361 (35%), Positives = 198/361 (54%), Gaps = 29/361 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 L M +E++E + IG + R QI++W + M+++ ++++ + Q Sbjct: 2 DLKSMTLQEMQEYMESIG----EKKFRAKQIYEWFHKHLALSLDEMNNVPKKLKEKIEQT 57 Query: 68 FSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I + VD IS DGTRK+L I IE+V + K ++C+SSQ GC + Sbjct: 58 QEIYGVKPVDCFISKIDGTRKYLFELYDGNI-----IESVLMKYKHGNSVCISSQAGCRM 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC + L RNLT E+L Q+ + D E ++SN+VMMG Sbjct: 113 GCKFCASTLGGLDRNLTPSEMLSQIYYIQ---------RDTE--------ERVSNVVMMG 155 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 GEP+ N+DNV + L + + GL+ S+R IT+ST G VP I + ++ + + LAISLH+ Sbjct: 156 TGEPMDNYDNVLRFLELITSEDGLNISQRNITISTCGIVPKIKELAQKHLQITLAISLHS 215 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++R L+PI KY ++ L+DAC +Y +N RR+TFEY ++ G+ND P A L Sbjct: 216 PNDEMRRGLMPIAMKYSIDELLDACHYYFKETN-RRMTFEYSLVAGVNDQPVHAEELAGR 274 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG P +NLIP NP ++ S K ++ F + ++++ + IR G DI AACGQL Sbjct: 275 LKGFPCHVNLIPVNPIKERDFKQSMPKSVMEFKKILEKNRVNVTIRREMGADINAACGQL 334 Query: 366 K 366 + Sbjct: 335 R 335 >gi|331082368|ref|ZP_08331494.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae bacterium 6_1_63FAA] gi|330400854|gb|EGG80455.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae bacterium 6_1_63FAA] Length = 348 Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 118/336 (35%), Positives = 187/336 (55%), Gaps = 25/336 (7%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKIS-CDGTRKWLLR 91 R QI++W++ + F MS++S +R L + + ++++ + S DGT+K+L Sbjct: 26 FRAKQIYEWLHQKQAESFDEMSNLSAALREKLKERCVLTTLKMLEVQTSKIDGTQKYLFA 85 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 P G V +E+V + K ++C+SSQVGC + C FC + RNL E+L Q+ Sbjct: 86 LP----DGNV-VESVLMKYKHGNSVCISSQVGCKMGCRFCASTIGGWTRNLLPSEMLEQI 140 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 + L G+ ++SN+V+MG GEPL N+DN+ + + + +D GL Sbjct: 141 YRIQKLSGE-----------------RVSNVVVMGTGEPLDNYDNLLQFIRLLTDENGLH 183 Query: 212 FSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 S+R +T+ST G VP + + EE + + LAISLHA + R L+PI KY + +++AC Sbjct: 184 ISQRNVTVSTCGIVPKMYELAEENLQITLAISLHASNQAKRAELMPIANKYSINEVLEAC 243 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 R+Y RR+TFEY ++ G ND+ DA L ++KG+ +NLIP NP +Y+ SD Sbjct: 244 RNYFE-KTGRRLTFEYSLVGGKNDTKEDAEELAHLIKGLNCHVNLIPVNPIKERDYVQSD 302 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +K I F +++ + IR G DI ACGQL+ Sbjct: 303 KKVIENFKNKLEKYQINVTIRREMGRDIDGACGQLR 338 >gi|298705390|emb|CBJ28680.1| conserved unknown protein [Ectocarpus siliculosus] Length = 335 Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 122/340 (35%), Positives = 189/340 (55%), Gaps = 26/340 (7%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 + R Q+ KWI+ G F+ M++I + +R L + ++ E+ ++S DGT+K R Sbjct: 5 KFRAKQVLKWIFEGGAESFEDMANIPKTLRAKLAKVATVGALEVAARQVSKDGTKKLAYR 64 Query: 92 FPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150 I IE+V +P R T C+SSQ GC++ C FC TG R L+A EI Q Sbjct: 65 LSDGQI-----IESVLMPYSDGRRTACISSQAGCAMGCVFCATGQMGFKRQLSAAEIFEQ 119 Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210 + ++++ G ++SN+V MGMGEPL N+ NV +++ + +G+ Sbjct: 120 A---------YRFSQELQ-----KRGDRLSNVVFMGMGEPLANYKNVMEAVRRINTELGI 165 Query: 211 SFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 R IT+ST G VP I R+ +E I V LA+SLHA ++ R L+P+NR++PL L+DA Sbjct: 166 G--ARHITISTVGLVPRILRLSQENIQVKLAVSLHAANDRERGALLPVNRRFPLSELMDA 223 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327 CR Y +S RR+TFE+ +++G NDS A L ++L+ + +N+IP NP G + Sbjct: 224 CREYVDVS-GRRMTFEWALIQGENDSAEVASELGRLLRPLKGMCHVNIIPLNPTDGYKGG 282 Query: 328 CSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 S + F E + ++G + R RG+DI A CGQL + Sbjct: 283 PSMADAVNQFVEVLAKNGVPATPRIRRGIDIDAGCGQLTA 322 >gi|260893173|ref|YP_003239270.1| radical SAM enzyme, Cfr family [Ammonifex degensii KC4] gi|260865314|gb|ACX52420.1| radical SAM enzyme, Cfr family [Ammonifex degensii KC4] Length = 360 Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 127/339 (37%), Positives = 193/339 (56%), Gaps = 29/339 (8%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDG-TRKWLL 90 R R Q+ W++V+G+ F+ M+++ + +R L + SI Y + ++ S DG T K+L Sbjct: 25 RYRAQQLIDWLFVKGVTSFREMTNLPKTLRERLEEIASITYLSVRVKRCSRDGRTIKFL- 83 Query: 91 RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150 + AR G IETV++ T+CVS+QVGC + C FC +G + L RNL+A EI Q Sbjct: 84 -YLARDGAG---IETVFMRHPWGRTVCVSTQVGCRMGCRFCASGAKGLKRNLSAGEIYEQ 139 Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210 VL + LG+ +++++V+MGMGEP N + + L + GL Sbjct: 140 VLRTQVELGE-----------------RVTHVVLMGMGEPFDNQEATFRFLENITHPAGL 182 Query: 211 SFSKRRITLSTSGFVPNI---ARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267 + R+IT+ST G VP I A++ + G LA+SLHA ++LR+ L+PINR+YPL+ L+ Sbjct: 183 NIGARKITISTCGVVPGIRALAQLKRQFG--LAVSLHAPRDELRSWLLPINRRYPLKELL 240 Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL 327 AC Y ++ RRITF Y M+ GIND +A L ++LKG+ +NLIPFN + Sbjct: 241 AACWEYVEATH-RRITFAYTMIAGINDGQEEARELARLLKGLLCHVNLIPFNLVNERRFR 299 Query: 328 CSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 I F ++ +G + +R RG +I AACGQL+ Sbjct: 300 PPSPARIEAFCRILEENGIPATVRRSRGEEIEAACGQLR 338 >gi|167750827|ref|ZP_02422954.1| hypothetical protein EUBSIR_01810 [Eubacterium siraeum DSM 15702] gi|167656262|gb|EDS00392.1| hypothetical protein EUBSIR_01810 [Eubacterium siraeum DSM 15702] gi|291530596|emb|CBK96181.1| 23S rRNA m(2)A-2503 methyltransferase [Eubacterium siraeum 70/3] Length = 338 Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 122/371 (32%), Positives = 209/371 (56%), Gaps = 37/371 (9%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K ++ + +EELEE +L +G + R QI+ W+++ + +F M+++S ++R Sbjct: 1 MEKTDILSLSKEELEEKILAMG----EKKFRAGQIYDWLHINKVEEFSKMTNLSAQLREK 56 Query: 64 LNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L+ F I +I +S D T K+L + ++ETV + K ++C+S+QV Sbjct: 57 LDDIFWINSLKIQKRLVSDIDNTVKYLY-----GLSDGEKVETVLMEYKHGNSICISTQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC + VRNL E+LLQ+ + GRKI+++ Sbjct: 112 GCKMGCKFCASTKAGFVRNLEPSEMLLQIYESER-----------------DSGRKINHV 154 Query: 183 VMMGMGEPLCNFDNVKKSLSI--ASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVML 239 V+MG+GEPL NFDNV K L + A D M L R +++ST G V I + + ++G+ L Sbjct: 155 VLMGIGEPLDNFDNVVKFLRLLSAKDDMSL----RHVSVSTCGLVNRIYELADLKLGITL 210 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 ++SLHA +N+LR+ ++PIN ++ +E L++AC++Y + RRI++E+ ++ G+ND+ + A Sbjct: 211 SVSLHAPTNELRSSIMPINDRFRIEELMEACKYYFN-TTGRRISYEFALIDGVNDNRQSA 269 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L+K+LKG +NLIP N E + + + + + G ++ +R G DI Sbjct: 270 DALLKLLKGQNCHVNLIPVNEIK--EGVFKRSASVEKYKQMLIDGGLNATVRRTLGADIS 327 Query: 360 AACGQLKSLSK 370 AACGQL+ +K Sbjct: 328 AACGQLRRDNK 338 >gi|332981566|ref|YP_004463007.1| 23S rRNA m(2)A-2503 methyltransferase [Mahella australiensis 50-1 BON] gi|332699244|gb|AEE96185.1| 23S rRNA m(2)A-2503 methyltransferase [Mahella australiensis 50-1 BON] Length = 344 Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 129/361 (35%), Positives = 196/361 (54%), Gaps = 30/361 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L M +++ + + ++G P R QI+ W+Y +G+ D MSD+ + R L + Sbjct: 6 ALKDMSMDDMSKLVQQLGQPA----YRAQQIFSWVY-KGVDDIDEMSDLPADFRKRLKER 60 Query: 68 FSIIYPEIVDEKISCDGTR-KWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I + S DG+ K+L I IE+V + + ++CVSSQVGC + Sbjct: 61 CYTDSCRIYKRQQSEDGSAIKYLFLLKDGNI-----IESVLMLYEYGNSVCVSSQVGCRM 115 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC + + + RNLT E++ Q+L + VGRKIS++V+MG Sbjct: 116 GCAFCASTIKGIKRNLTKGEMVDQIL-----------------RIQQDVGRKISHVVLMG 158 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 GEPL N++ + + + GL+ S R +TLST G VP I + +E + + LA+SLHA Sbjct: 159 SGEPLDNYEQSIAFMRLLHEPKGLNISYRNMTLSTCGLVPRIYDLAKEGMPITLAVSLHA 218 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++D+R L+P+++ Y ++ +I AC +Y RR+TFEY+MLK IND A L + Sbjct: 219 PNDDIRRQLIPMSKVYSIDDIIKACNYYIE-KTGRRVTFEYIMLKDINDRVEHAYMLADV 277 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG+ +NLIPFN GCE+ S QK I F + + G IR G DI AACGQL Sbjct: 278 LKGMICHVNLIPFNNVEGCEFQPSSQKQIEHFYGILNKKGIPVSIRRRLGTDIDAACGQL 337 Query: 366 K 366 + Sbjct: 338 R 338 >gi|332300071|ref|YP_004441992.1| Ribosomal RNA large subunit methyltransferase N [Porphyromonas asaccharolytica DSM 20707] gi|332177134|gb|AEE12824.1| Ribosomal RNA large subunit methyltransferase N [Porphyromonas asaccharolytica DSM 20707] Length = 341 Score = 206 bits (525), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 130/365 (35%), Positives = 192/365 (52%), Gaps = 30/365 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++G +L E + +G+P + QI W+Y + + + M+++S++ R LL Sbjct: 5 HQILGKTPAQLTELAVGLGLP----KYTGQQIADWLYQKHVSTWDEMTNLSKKARALLAS 60 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 H+ I ++ S DGT K+L F A GG +ETV IPE R TLCVSSQ GC + Sbjct: 61 HYEIGRAAPHLQQTSRDGTVKYL--FAA---GGGF-VETVMIPEGDRATLCVSSQRGCKM 114 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG Q NL+A EIL Q+L +P V +++NIV MG Sbjct: 115 NCLFCMTGKQGFGANLSASEILNQIL------------------SVPEVN-ELTNIVFMG 155 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEP+ N D + + + +D GL+ S +RIT+ST G P + R EE LAISLH Sbjct: 156 MGEPMDNIDTLLQVIRCLTDPKGLAMSPKRITVSTIGLRPGLERFLEECTCHLAISLHNP 215 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 + R ++P+ R PL + RHY S RR+TFEY++ G+ND+PR L ++L Sbjct: 216 LPEERLAIMPVERAMPLADTVALLRHY-DWSRQRRLTFEYIVFSGLNDTPRHLAALKRLL 274 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + +NLI ++ P + SD + + + +G + IRT RG DI AACG L Sbjct: 275 SQLDCHVNLIRYHRIPHIDLPSSDMTRMEWLRDRLCEAGIPTTIRTSRGEDISAACGMLS 334 Query: 367 SLSKR 371 + ++ Sbjct: 335 TQEQQ 339 >gi|225871755|ref|YP_002753209.1| radical SAM enzyme, Cfr family [Acidobacterium capsulatum ATCC 51196] gi|225791340|gb|ACO31430.1| radical SAM enzyme, Cfr family [Acidobacterium capsulatum ATCC 51196] Length = 396 Score = 206 bits (525), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 141/392 (35%), Positives = 202/392 (51%), Gaps = 61/392 (15%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH- 67 L G+ EEL EAL +P +R Q+ +Y + + ++ + QE+R L + Sbjct: 27 LFGLSFEELSEALADFRLPPWRLR----QVRHALYRQWAASWSEVTTLPQELRESLEKAG 82 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK---------------- 111 F+ P IV+ S DGT ++L+ A G VE TV++P Sbjct: 83 FAPGLPGIVETFRSVDGTERYLI---AGHDGQTVE--TVWMPGGDGGEAGDGSGSDGAGD 137 Query: 112 ------------SRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL--LARSL 157 R T+CVSSQ+GC++ C FC T ++RNLTA EI QV+ L R Sbjct: 138 DRPGEDSGEAAYQRATICVSSQIGCAVNCQFCLTARLGIIRNLTAGEIAGQVVAVLKRQQ 197 Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217 + +GR N+V MGMGEP N+D ++ + SD +G+ S R+ Sbjct: 198 V---------------EMGRDRINLVFMGMGEPFLNYDAFMDAVRLLSDEVGIPVS--RM 240 Query: 218 TLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276 T+STSG VP I R EE + LAISL+A + +R ++PINRK+ + ++DA R P L Sbjct: 241 TVSTSGIVPGILRFAEEPVRPKLAISLNAPDDIVREAVMPINRKWDIAEVLDAVRKVP-L 299 Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDI 334 R+TFEYV+L G+ND P A + ++L+ +P K+NLI +NP P Y +D+ Sbjct: 300 RAKERVTFEYVLLGGVNDQPEHAETVARLLRRANLPLKVNLIVWNPGPDVPYTMPKAEDV 359 Query: 335 VTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 F E + G + IR PRG DI AACGQLK Sbjct: 360 AAFQEYLVGKGVPAYIRRPRGRDIYAACGQLK 391 >gi|313886711|ref|ZP_07820421.1| 23S rRNA m2A2503 methyltransferase [Porphyromonas asaccharolytica PR426713P-I] gi|312923873|gb|EFR34672.1| 23S rRNA m2A2503 methyltransferase [Porphyromonas asaccharolytica PR426713P-I] Length = 341 Score = 206 bits (525), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 131/365 (35%), Positives = 192/365 (52%), Gaps = 30/365 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++G +L E + +G+P + QI W+Y + + + M+++S++ R LL Sbjct: 5 HQILGKTPTQLTELAVGLGLP----KYTGQQIADWLYQKHVSTWDEMTNLSKKARALLAS 60 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 H+ I ++ S DGT K+L F A GG IETV IPE R TLCVSSQ GC + Sbjct: 61 HYEIGRAAPHLQQTSRDGTVKYL--FAA---GGGF-IETVMIPEGDRATLCVSSQRGCKM 114 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG Q NL+A EIL Q+L +P V +++NIV MG Sbjct: 115 NCLFCMTGKQGFGANLSASEILNQIL------------------SVPEVN-ELTNIVFMG 155 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEP+ N D + + + +D GL+ S +RIT+ST G P + R EE LAISLH Sbjct: 156 MGEPMDNIDTLLQVIRCLTDPQGLAMSPKRITVSTIGLRPGLERFLEECTCHLAISLHNP 215 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 + R ++P+ R PL + RHY S RR+TFEY++ G+ND+PR L ++L Sbjct: 216 LPEERLSIMPVERAMPLADTVALLRHY-DWSRQRRLTFEYIVFSGLNDTPRHLAALKRLL 274 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + +NLI ++ P + SD + + + +G + IRT RG DI AACG L Sbjct: 275 AQLDCHVNLIRYHRIPHIDLPSSDMTRMEWLRDRLCEAGIPTTIRTSRGEDISAACGMLS 334 Query: 367 SLSKR 371 + ++ Sbjct: 335 TQEQQ 339 >gi|325261901|ref|ZP_08128639.1| radical SAM enzyme, Cfr family [Clostridium sp. D5] gi|324033355|gb|EGB94632.1| radical SAM enzyme, Cfr family [Clostridium sp. D5] Length = 345 Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 119/363 (32%), Positives = 200/363 (55%), Gaps = 29/363 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ + E+L+ + IG + R Q+++W++V+ F M+++S+E+R L+ Sbjct: 2 KKDIRAYTYEQLQAEMAAIG----EKKFRAKQLYEWLHVKLAGSFDEMTNLSRELREKLD 57 Query: 66 QHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + + I+ +++ + S DGT K+L + + +E+V + K ++C+SSQVGC Sbjct: 58 REYEILPVRMLERQESQMDGTNKFLFMLHDQNV-----VESVLMRYKHGNSVCISSQVGC 112 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC + LVRNL+ E+L Q+ + + G+ ++SN+V+ Sbjct: 113 RMGCRFCASTIGGLVRNLSPSEMLGQIYEIQKVTGE-----------------RVSNVVI 155 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG GEPL N++N + + +D GL S+R +T+ST G VP + + EE + + LA+SL Sbjct: 156 MGTGEPLDNYENFLCFIRLLTDEHGLHISQRNVTVSTCGIVPKMLELAEENLQITLALSL 215 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H + + R L+P+ KY L ++ AC Y RRITFEY ++ G+ND+ DA LI Sbjct: 216 HGTTQEKRKELMPVANKYELSDVLHACDEYF-RKTGRRITFEYSLVHGVNDTDEDAGELI 274 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +ILK +NLIP NP ++ +K+ + F +++SG + IR G DI ACG Sbjct: 275 RILKPRNCHLNLIPVNPVKERSFVRPSRKNALNFKNKLEKSGINVTIRREMGADIDGACG 334 Query: 364 QLK 366 QL+ Sbjct: 335 QLR 337 >gi|78184186|ref|YP_376621.1| ribosomal RNA large subunit methyltransferase N [Synechococcus sp. CC9902] gi|123743556|sp|Q3AZA0|RLMN_SYNS9 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|78168480|gb|ABB25577.1| conserved hypothetical protein [Synechococcus sp. CC9902] Length = 351 Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 130/369 (35%), Positives = 193/369 (52%), Gaps = 37/369 (10%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR-HLL 64 K L+G ELE+ + Q H R QI W+Y +G++ +S + ++ R L Sbjct: 2 KNVLLGRSAAELED----WAVAQGHKSFRGRQIHDWLYNKGVKSLSEISALPKQWRTELE 57 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q F + ++V + ++ D T K LL IETV IP R T+C+SSQVGC Sbjct: 58 AQTFRVGRLKLVHQSVAADATTKLLL-----ATDDGETIETVGIPTDQRLTVCISSQVGC 112 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L R+L EI+ QVL R ++ R+ S++V Sbjct: 113 PMACRFCATGKSGLQRSLATHEIVDQVLSVRE-----------------AMDRRPSHVVF 155 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF---VPNIARVG-EEIG---V 237 MGMGEPL N + V +++ + +G+ +RRIT+ST G +P +A + E++G Sbjct: 156 MGMGEPLLNSEAVLETIRCLNTDLGIG--QRRITVSTVGVPKTLPQLAELAMEKLGRAQF 213 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 LA+SLHA + LR L+P YP + L+D CRHY L+ RR++FEY++L +ND P Sbjct: 214 TLAVSLHAPNQQLREELIPTAHAYPYDDLLDDCRHYLDLT-GRRVSFEYILLGELNDHPE 272 Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 A L + G + +NLI +NP E+ + I F ++R G + +R RGLD Sbjct: 273 HAAELADRVGGFQSHVNLIAYNPIEEEEFKRPTSQRIEAFRRVLERRGVAVSLRASRGLD 332 Query: 358 ILAACGQLK 366 AACGQL+ Sbjct: 333 QNAACGQLR 341 >gi|320334270|ref|YP_004170981.1| ribosomal RNA large subunit methyltransferase N [Deinococcus maricopensis DSM 21211] gi|319755559|gb|ADV67316.1| Ribosomal RNA large subunit methyltransferase N [Deinococcus maricopensis DSM 21211] Length = 346 Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 124/335 (37%), Positives = 178/335 (53%), Gaps = 24/335 (7%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93 R Q+ +W++ +G F+ M+++ VR L +S+ + S DG+ K+L Sbjct: 18 RRKQLLQWVFEKGAGRFEDMTNLPANVRAELAASYSLDPFLHTETARSRDGSVKYLF--- 74 Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL- 152 + ++E VY+P R T+CVS+ VGC C+FC TG RNLTA EI+ QVL Sbjct: 75 --TLHDGKQMEAVYMPYLDRKTVCVSTMVGCPAKCAFCATGAMGFGRNLTAGEIVGQVLA 132 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 +AR G +P R I ++V MGMGE L N+DNV + I + Sbjct: 133 VAR-------------GEGLPP--RDIRSLVFMGMGEGLLNYDNVMLASRILLHPLAFDM 177 Query: 213 SKRRITLSTSGFVPNIARVGEE--IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 SKRR+TLST G I ++ E +G+ LAISLHA + R ++P + + ++DA Sbjct: 178 SKRRVTLSTVGLPKGIRKLAREDDLGIRLAISLHAPDEETRQRIIPTGHRNSIADIMDAA 237 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 R Y ++ RRITFEY ML+G+ND A L +L+G+ A +NLIP NPW G + S Sbjct: 238 REYQDVT-GRRITFEYSMLRGVNDHLWQAEELAGLLRGLVAHVNLIPMNPWEGSGFEEST 296 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + I F + + G +R RG D AACGQL Sbjct: 297 EAQIQAFYDVLSARGVEVSVRRSRGRDAGAACGQL 331 >gi|329120993|ref|ZP_08249624.1| cfr family radical SAM enzyme [Dialister micraerophilus DSM 19965] gi|327471155|gb|EGF16609.1| cfr family radical SAM enzyme [Dialister micraerophilus DSM 19965] Length = 344 Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 128/358 (35%), Positives = 199/358 (55%), Gaps = 29/358 (8%) Query: 11 GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70 G +ELEE + P + R QI ++Y R I F M + + +R L ++ SI Sbjct: 7 GKSLKELEEYITLNNFP----KFRAKQIHDYLYHRCIFTFDEMKQLPKNMREWLKENASI 62 Query: 71 IYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129 PE+++ S DG T K L + + ETV + K ++CVS+Q+GC++ C Sbjct: 63 YIPEVINSIQSNDGNTTKILFKLKDGSLA-----ETVCMHHKYGNSICVSTQIGCAMGCI 117 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 FC + L RNLT E+L QV + L ++I + +IV+MG GE Sbjct: 118 FCASTRNGLERNLTFGEMLSQVYAFKKL-------KNIS----------VHSIVLMGAGE 160 Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248 PL N++N K + + +DS L+ S R ITLST G VP I R+ +E + + LAISLHA ++ Sbjct: 161 PLTNYENCLKFIKLCNDSSILNISYRNITLSTCGIVPQIYRLEKENLPITLAISLHAPND 220 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 +RN ++P ++ + +E +I A +HY + RRITFEY+++KGIN +P+ A+ L K++ Sbjct: 221 KIRNEILPSSKHFKIEDVIRASKHYFE-NTGRRITFEYILIKGINAAPKHAVELAKLIGN 279 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + INLIP N + +K+I F + +++ G S+ +R G +I AACGQLK Sbjct: 280 LNCHINLIPVNGTEHIQLFAPSKKEIFEFQQILEKMGKSATVRRQMGNEIQAACGQLK 337 >gi|269216514|ref|ZP_06160368.1| radical SAM enzyme, Cfr family [Slackia exigua ATCC 700122] gi|269130043|gb|EEZ61125.1| radical SAM enzyme, Cfr family [Slackia exigua ATCC 700122] Length = 345 Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 122/360 (33%), Positives = 193/360 (53%), Gaps = 32/360 (8%) Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75 E A+ ++ +P R QI +W+Y +G + M+++S+ +R L + P I Sbjct: 11 EAATAIKELDLPA----FRARQIAQWVYGKGAASYDEMTNLSRSLRERLAVELPLYTPRI 66 Query: 76 VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135 VD +IS DGTRK+++ F E V +P +R T+C S+QVGC++ CSFC TG Sbjct: 67 VDRQISQDGTRKYIVAFH-----DGASTEMVAMPYGNRLTVCFSTQVGCAMQCSFCATGK 121 Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195 + RNL E++ Q++LA +G ++SN+V MG GEPL N + Sbjct: 122 EGFTRNLVPGEMVDQIILAEK-----------------DMGTRVSNVVSMGQGEPLLNLE 164 Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI---ARVGEEIGVMLAISLHAVSNDLRN 252 N+ +L I +D R I +ST G V I A +GE+ +LA+SLH+ + R+ Sbjct: 165 NLSAALEILNDPAYRGIGARHIVVSTCGIVQGIRAFADIGEQ--YVLAVSLHSAIQETRD 222 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312 +++P P++ LI+A + Y ++ RR+TFEYV+++G+ND R LI I + + Sbjct: 223 MIMPRVANQPIDALIEAIQEYDRKTH-RRVTFEYVLIQGMNDDRRHIDALIDICRRTHSN 281 Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRI 372 +NLI N + S +K + F + +K +G + IR RG DI ACGQLK+ R+ Sbjct: 282 VNLIELNEIEESPFRPSGRKVSLEFVKRLKSAGIEASIRDSRGSDIAGACGQLKNERARL 341 >gi|159025948|emb|CAO86242.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 337 Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 129/361 (35%), Positives = 191/361 (52%), Gaps = 31/361 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L+ EEL + + G P R Q+ +W+Y +G+ +S QE R L Sbjct: 2 TLLAKSLEELTDWVKDQGQPA----YRGKQLHQWLYEKGVHSLADISVFPQEWRSKLAD- 56 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 + I I ++ D TRK+LL+ I IE V IP + R T+CVSSQVGC + Sbjct: 57 YPIGRSLIHYRSVAPDRTRKYLLKLADGLI-----IEAVGIPSEKRLTVCVSSQVGCPMA 111 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC TG RNL A EI+ QVL + ED + +++S++V MGM Sbjct: 112 CDFCATGKGGFTRNLKAYEIVDQVLTVQ---------EDFQ--------QRVSHVVFMGM 154 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 GEPL N V ++ + +G+ +R +T+ST G I ++ E + V A+SLHA Sbjct: 155 GEPLLNIPEVVTAIHSLNQDVGIG--QRCLTISTVGLPHKIKQLAEHNLQVTFAVSLHAS 212 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 + +R L+P YPL LI C+ Y ++ RR+TFEY++L G+ND P A L+K++ Sbjct: 213 NQQVRAKLIPSADHYPLTNLIQDCQEYVQIT-GRRVTFEYILLAGVNDLPEHARELVKLV 271 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 KG + +NLIP+NP +Y D+K I F +++ + +R RGL AACGQL+ Sbjct: 272 KGFQSHVNLIPYNPIQEVDYQRPDEKRIKAFKTILEQEKVAVTVRYSRGLAADAACGQLR 331 Query: 367 S 367 S Sbjct: 332 S 332 >gi|237745020|ref|ZP_04575501.1| radical SAM family enzyme [Fusobacterium sp. 7_1] gi|229432249|gb|EEO42461.1| radical SAM family enzyme [Fusobacterium sp. 7_1] Length = 358 Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 131/376 (34%), Positives = 203/376 (53%), Gaps = 33/376 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +++ + +EEL E L+ +G+ + + + +++ W++ + R F M+++S + R +L Sbjct: 4 EKINILNLTQEELTELLVSLGLKKFYGK----EVFIWLHKKITRSFDEMTNLSLKDREIL 59 Query: 65 NQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLC 117 + I + ++ +IS D T K+L + IETV + K R TLC Sbjct: 60 KEKTYIPFFNLLKHQISKIDRTEKFLFELEDKGT-----IETVLLRHKDSKNKEIRNTLC 114 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 +SSQVGC + CSFC TG +RNL+ EIL QV L G Sbjct: 115 ISSQVGCPVKCSFCATGQSGYMRNLSVSEILNQVYTVERRL--------------RKKGE 160 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIG 236 ++N+V MGMGEPL N DN+ KSLSI S+ G++ SKR+IT+STSG V I ++ ++I Sbjct: 161 TLNNLVFMGMGEPLLNIDNLAKSLSIISNENGINISKRKITISTSGVVSGIEKILLDKIP 220 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 + LAISLH+ N+ R+ ++P+N+ +PLE L Y + RRITFEY+++ N S Sbjct: 221 IELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLIEYQKQT-KRRITFEYILIDNFNISE 279 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRG 355 DA L + +NLIP+N G E+ K I F +K + +R +G Sbjct: 280 TDANALADFVHQFDHVVNLIPYNEVEGVEHTRPSVKKIDKFYNYLKNVRRVNVTLRQEKG 339 Query: 356 LDILAACGQLKSLSKR 371 DI ACGQL+ +K+ Sbjct: 340 SDIDGACGQLRQRNKK 355 >gi|160880620|ref|YP_001559588.1| radical SAM protein [Clostridium phytofermentans ISDg] gi|205829644|sp|A9KM95|RLMN_CLOPH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|160429286|gb|ABX42849.1| radical SAM enzyme, Cfr family [Clostridium phytofermentans ISDg] Length = 356 Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 124/354 (35%), Positives = 198/354 (55%), Gaps = 29/354 (8%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 EEL+ +L IG + R QI++W++V+ +RDF+ M+++S+E+R L + +I Sbjct: 16 EELKASLKIIGEKE----FRAKQIYEWLHVKLVRDFEEMTNLSKELRAKLASEYELICVN 71 Query: 75 IVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133 ++ S DGT K+L R G V +E V + ++C+SSQVGC + C FC + Sbjct: 72 DLERYESKMDGTVKYLFRLS----DGNV-VECVLMKYHHGNSVCISSQVGCRMGCRFCAS 126 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 L RNL E+L +V + L G+ ++SNIV+MG GEP+ N Sbjct: 127 TLGGLTRNLKTSEMLDEVYQIQRLSGE-----------------RVSNIVIMGTGEPMDN 169 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252 +DN K + + S S GL+ S+R IT+ST G VP + + EE + LA+SLHA +++ R Sbjct: 170 YDNFVKFIRMISSSDGLNISQRNITVSTCGIVPKMRALAEEGFAITLALSLHAPNDEERA 229 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312 ++P+ Y L+ +++AC +Y RR+++EY ++ G+ND+ A L ++LKG Sbjct: 230 KIMPVANSYQLQDVLNACDYYYE-KTGRRVSYEYSLVDGVNDTAACAKELSRLLKGKNCH 288 Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +NLIP NP +Y S +I F ++++ + IR G DI AACGQL+ Sbjct: 289 VNLIPVNPIKERDYKRSTGNNIQNFKNILEKNRINVTIRREMGSDINAACGQLR 342 >gi|196233391|ref|ZP_03132235.1| radical SAM enzyme, Cfr family [Chthoniobacter flavus Ellin428] gi|196222531|gb|EDY17057.1| radical SAM enzyme, Cfr family [Chthoniobacter flavus Ellin428] Length = 367 Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 134/341 (39%), Positives = 180/341 (52%), Gaps = 28/341 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ---HFSIIYPEIVDEKISCDG-TRKW 88 + T +W+ +Y G D S+ +R L+ + PE+V + S DG TRK+ Sbjct: 33 VHTHALWRALYREGATDLARRSEFLPPLRRWLDAATARLPVDVPELVADTASTDGLTRKF 92 Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 LLR + IETV + + R T CVS+Q GC++ C FC TG R+L EI+ Sbjct: 93 LLR-----LADAQTIETVLMSYRGRYTACVSTQAGCAMGCVFCATGQMGFTRHLRPGEIV 147 Query: 149 LQVLLA-RSLLG-DFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD 206 QVL A R+LL PG + N+V+MGMGEPL N+D+V +L I SD Sbjct: 148 AQVLHAQRTLLARSEPG---------------LRNLVLMGMGEPLHNYDSVMTALEIISD 192 Query: 207 SMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEM 265 GL+ IT+ST G VP I R+ EE LA+SLH S + R+ LVP +R++ L Sbjct: 193 RRGLNIGPGHITISTVGVVPGILRLAEEQRPYHLAVSLHGASEEERSALVPASRRWSLAE 252 Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE 325 LI ACR Y G RRI FE+ ++ G NDSP A L +L GI A +NLIP NP G Sbjct: 253 LIAACRTY-GAKTGRRIFFEWTLIAGQNDSPAQAARLAALLAGIDAHVNLIPLNPTGGFA 311 Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 S F +K + S +R RG+D+ A CGQL+ Sbjct: 312 GTASASAAANEFQHTLKAANIPSTVRQRRGIDVAAGCGQLR 352 >gi|308173538|ref|YP_003920243.1| Fe-S-cluster AdoMet radical enzyme [Bacillus amyloliquefaciens DSM 7] gi|307606402|emb|CBI42773.1| putative Fe-S-cluster AdoMet radical enzyme [Bacillus amyloliquefaciens DSM 7] Length = 363 Score = 206 bits (524), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 114/340 (33%), Positives = 190/340 (55%), Gaps = 21/340 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R +QI++W+Y + + F M+++S+ +R L +F + + ++ S DGT K+L Sbjct: 40 FRAAQIFEWLYEKRVSSFDEMTNLSKSLREKLESNFVMTTMKTAVKQTSQDGTMKFLFE- 98 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + IETV + + ++CV++QVGC + C+FC + L RNL A EI+ QV+ Sbjct: 99 ----LHDGYTIETVLMRHEYGNSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVAQVV 154 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 + L + ++S++V+MG+GEP NF+ + L I + GL+ Sbjct: 155 KVQKALDE--------------TDERVSSVVIMGIGEPFDNFNEMLAFLKIINHDKGLNI 200 Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 R IT+STSG +P I ++ + + AISLHA + ++R+ L+PIN+ Y L L++A + Sbjct: 201 GARHITVSTSGIIPKIYDFADQKMQINFAISLHAPNTEIRSRLMPINKAYKLPDLMEAVK 260 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 +Y RRI+FEY + G+ND A L ++LKG+ +NLIP N P +Y+ + + Sbjct: 261 YYIE-KTGRRISFEYGLFGGVNDQVEHAEELAELLKGVKCHVNLIPVNYVPERDYVRTPR 319 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 I F + +K G + IR +G DI AACGQL++ ++ Sbjct: 320 DQIFAFEKTLKSRGVNVTIRREQGHDIDAACGQLRAKERQ 359 >gi|332799418|ref|YP_004460917.1| Ribosomal RNA large subunit methyltransferase N [Tepidanaerobacter sp. Re1] gi|332697153|gb|AEE91610.1| Ribosomal RNA large subunit methyltransferase N [Tepidanaerobacter sp. Re1] Length = 343 Score = 206 bits (524), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 129/368 (35%), Positives = 205/368 (55%), Gaps = 36/368 (9%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K +L + ++EE + ++G P R QI+KWIY +G +F+ M+D+S+++ Sbjct: 1 MEKTNLKSLTLTQMEEFIKQLGEPV----YRAKQIFKWIY-KGQTEFEKMTDLSKDLIAR 55 Query: 64 LNQHFSI----IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119 L + IY + E D T K++ G + +E+V + T C+S Sbjct: 56 LKDCAYVGKIDIYKKYESE---IDETTKYVFALE----DGQM-VESVKMKYSFGTTACIS 107 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 SQVGCS+ C+FC + +VRNL E+ +V+ + KI Sbjct: 108 SQVGCSMGCAFCASTEGGMVRNLAWWEMADEVI-----------------AIEKDSNVKI 150 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238 S +V+MG GEPL N+D + + L I + + + S RR+T+ST G VP I R+ EE + + Sbjct: 151 SRVVVMGSGEPLLNYDELIQFLRILNSPLAFNISYRRLTVSTCGIVPKIIRLAEEGLPIT 210 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLHA ++D+R+ L+PIN +YP+ L+DAC++Y + RRITFEY+++ IND+ + Sbjct: 211 LAVSLHAPNDDIRSSLMPINERYPILQLLDACKYYI-MKTKRRITFEYILISDINDTEQC 269 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L +LK + +NLIP NP G ++ SD I F + + +G S+ +R G DI Sbjct: 270 ACELSNLLKDLLCHVNLIPLNPVEGKKFKKSDDSRIRKFEQILLNNGISATVRREMGSDI 329 Query: 359 LAACGQLK 366 AACGQL+ Sbjct: 330 NAACGQLR 337 >gi|210135589|ref|YP_002302028.1| ribosomal RNA large subunit methyltransferase N [Helicobacter pylori P12] gi|254807183|sp|B6JNS0|RLMN_HELP2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|210133557|gb|ACJ08548.1| radical SAM domain-containing enzyme [Helicobacter pylori P12] Length = 357 Score = 206 bits (524), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 129/354 (36%), Positives = 196/354 (55%), Gaps = 31/354 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R Q++ W+Y + F+ M ++ S++ L + F++ EI + S DG++K+L + Sbjct: 21 FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLEREFTLRTIEITHVRESVDGSKKYLFK 80 Query: 92 -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141 F A + ++ ET I E + T+CVS Q+GC + C+FC+T VRN Sbjct: 81 SLRDNHTFEAVLLKMKDKKIDKETNAILEGEKYTVCVSCQIGCQVGCAFCFTQKGGFVRN 140 Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 L A EI+ Q LL + E +P K NIV MGMGEPL N D V K++ Sbjct: 141 LKASEIIQQALLIK------------EDNNLPI--EKALNIVFMGMGEPLNNLDEVCKAI 186 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260 I + G+ S +RIT+STSG I G+ +GV LAISLHAV + R+ L+P+N+K Sbjct: 187 EIFN--TGMQISPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKK 244 Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 Y +E +++ + +P L +R+ FEY+++K +ND A L+K+L GI +K+NLI FNP Sbjct: 245 YNIECVLNEVKKWP-LEQRKRVMFEYLLIKDLNDGLDCAKKLLKLLNGIKSKVNLILFNP 303 Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372 G ++ + F++ + G IR + LDI AACGQL K LS++I Sbjct: 304 HEGSKFERPSLESARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLSQQI 357 >gi|291536614|emb|CBL09726.1| 23S rRNA m(2)A-2503 methyltransferase [Roseburia intestinalis M50/1] Length = 349 Score = 206 bits (524), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 123/366 (33%), Positives = 200/366 (54%), Gaps = 33/366 (9%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K + M EEL+ + IG R Q+++W++ + F M+++S+ ++ L Sbjct: 4 EKTDIKSMNLEELKSYMESIGEKP----FRAKQLYQWMHEKQAASFDEMTNLSKSLQEKL 59 Query: 65 NQ--HFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 + HF + E V +IS DGTRK+L G V IE+V + K ++C+SSQ Sbjct: 60 KKECHFVSLKQEAV--QISKIDGTRKYLFALD----DGNV-IESVLMRYKHGNSVCISSQ 112 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC + C FC + LVR LT E+L Q+ + G +++N Sbjct: 113 VGCRMGCRFCASTLDGLVRGLTPSEMLDQIY-----------------RITRDTGERVAN 155 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240 +V+MG GEP+ NFDN+ K + + +D GL+ S+R +T+ST G VP + + ++ + + LA Sbjct: 156 VVVMGTGEPMDNFDNLLKFIELLTDENGLNISQRNVTVSTCGIVPKMRELADKKLQITLA 215 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA S + R L+P+ KY + +I+ACR+Y + RR+TFEY ++ G+ND+ D Sbjct: 216 LSLHASSQEKRLELMPVANKYEIHEVIEACRYYFEQT-GRRVTFEYSLVGGVNDTDEDVR 274 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L ++ G+ +NLIP NP Y+ D + I+ F ++++ + IR G DI Sbjct: 275 RLADLIHGMNCHVNLIPVNPIKERSYVQPDHEAILNFKNRLEKNAINVTIRREMGRDIDG 334 Query: 361 ACGQLK 366 ACGQL+ Sbjct: 335 ACGQLR 340 >gi|118472101|ref|YP_886882.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium smegmatis str. MC2 155] gi|205829815|sp|A0QVE4|RLMN_MYCS2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|118173388|gb|ABK74284.1| radical SAM enzyme, Cfr family protein [Mycobacterium smegmatis str. MC2 155] Length = 372 Score = 206 bits (524), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 134/358 (37%), Positives = 196/358 (54%), Gaps = 27/358 (7%) Query: 20 ALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD-- 77 A+ ++G+P R Q+ Y R I D Q M+D+ VR +Q ++P +++ Sbjct: 30 AVTELGLPA----FRAKQLANQYYGRLIADPQQMTDLPAAVR---DQVAEKLFPTLINPV 82 Query: 78 EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135 +I CD TRK L R I G E+V + R T+C+SSQ GC + C FC TG Sbjct: 83 REIQCDAGETRKTLWR----AIDGST-FESVLMRYPQRNTVCISSQAGCGMACPFCATGQ 137 Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195 L RNLT EIL QV A S + E + G ++SNIV MGMGEPL N++ Sbjct: 138 GGLQRNLTTAEILEQVRAASSTM----RAEHFGRTAGTAGGGRLSNIVFMGMGEPLANYN 193 Query: 196 NVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252 V ++ IA+ G S R +T+ST G P I ++ +E +GV LA+SLHA ++LR+ Sbjct: 194 RVLGAVRRIIAAPPNGFGISARSVTVSTVGLAPAIRKLADERLGVTLALSLHAPDDELRD 253 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI--P 310 LVP+N ++ + ++DA R+Y + RR++ EY +++ +ND P A L K L G P Sbjct: 254 TLVPVNNRWKVSEVLDAARYYAD-TTGRRVSIEYALIRDVNDQPWRADLLGKKLHGALGP 312 Query: 311 -AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 A +N+IP NP PG E+ S + F + ++ G S +R RG +I AACGQL + Sbjct: 313 LAHVNVIPLNPTPGSEWDASPKPAEREFVKRVRERGVSCTVRDTRGREIAAACGQLAA 370 >gi|256844888|ref|ZP_05550346.1| radical SAM family enzyme [Fusobacterium sp. 3_1_36A2] gi|256718447|gb|EEU32002.1| radical SAM family enzyme [Fusobacterium sp. 3_1_36A2] Length = 358 Score = 206 bits (524), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 130/376 (34%), Positives = 203/376 (53%), Gaps = 33/376 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +++ + +EEL E L+ +G+ + + + +++ W++ + R F M+++S + R +L Sbjct: 4 EKINILNLTQEELTELLVSLGLKKFYGK----EVFIWLHKKITRSFDEMTNLSLKDREIL 59 Query: 65 NQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLC 117 + I + ++ ++S D T K+L + IETV + K R TLC Sbjct: 60 KEKTYIPFFNLLKYQVSKIDKTEKFLFELEDKGT-----IETVLLRHKDSKNREIRNTLC 114 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 VSSQVGC + CSFC TG +RNL+ EIL Q+ L G Sbjct: 115 VSSQVGCPVKCSFCATGQSGYMRNLSVSEILNQIYTVERRL--------------RKKGE 160 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIG 236 ++N+V MGMGEPL N DN+ KSLSI S+ G++ SKR+IT+STSG V I ++ ++I Sbjct: 161 TLNNLVFMGMGEPLLNIDNLAKSLSIISNENGINISKRKITISTSGVVSGIEKILLDKIP 220 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 + LAISLH+ N+ R+ ++P+N+ +PLE L Y + RRITFEY+++ N S Sbjct: 221 IELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLVEYQKQT-KRRITFEYILIDNFNISE 279 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRG 355 DA L + +NLIP+N G E+ K I F +K + +R +G Sbjct: 280 ADANALADFIHQFDHVVNLIPYNEVEGVEHTRPSVKKIDKFYNYLKNVRKVNVTLRQEKG 339 Query: 356 LDILAACGQLKSLSKR 371 DI ACGQL+ +K+ Sbjct: 340 SDIDGACGQLRQRNKK 355 >gi|328553529|gb|AEB24021.1| ribosomal RNA large subunit methyltransferase N [Bacillus amyloliquefaciens TA208] gi|328911679|gb|AEB63275.1| putative Fe-S-cluster AdoMet radical enzyme [Bacillus amyloliquefaciens LL3] Length = 363 Score = 206 bits (524), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 114/340 (33%), Positives = 190/340 (55%), Gaps = 21/340 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R +QI++W+Y + + F M+++S+ +R L +F + + ++ S DGT K+L Sbjct: 40 FRAAQIFEWLYEKRVSSFDEMTNLSKSLREKLESNFVMTTLKTAVKQTSQDGTMKFLFE- 98 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + IETV + + ++CV++QVGC + C+FC + L RNL A EI+ QV+ Sbjct: 99 ----LHDGYTIETVLMRHEYGNSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVAQVV 154 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 + L + ++S++V+MG+GEP NF+ + L I + GL+ Sbjct: 155 KVQKALDE--------------TDERVSSVVIMGIGEPFDNFNEMLAFLKIINHDKGLNI 200 Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 R IT+STSG +P I ++ + + AISLHA + ++R+ L+PIN+ Y L L++A + Sbjct: 201 GARHITVSTSGIIPKIYDFADQKMQINFAISLHAPNTEIRSRLMPINKAYKLPDLMEAVK 260 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 +Y RRI+FEY + G+ND A L ++LKG+ +NLIP N P +Y+ + + Sbjct: 261 YYIE-KTGRRISFEYGLFGGVNDQVEHAEELAELLKGVKCHVNLIPVNYVPERDYVRTPR 319 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 I F + +K G + IR +G DI AACGQL++ ++ Sbjct: 320 DQIFAFEKTLKSRGVNVTIRREQGHDIDAACGQLRAKERQ 359 >gi|291547144|emb|CBL20252.1| 23S rRNA m(2)A-2503 methyltransferase [Ruminococcus sp. SR1/5] Length = 346 Score = 206 bits (524), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 126/357 (35%), Positives = 196/357 (54%), Gaps = 30/357 (8%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 M EEL+E + KIG R QI+ W++ + + + M+++S+ +R L+ + I Sbjct: 7 MTMEELKEFMTKIG----EKPFRAKQIYAWLHQQLVTSWDEMTNLSKSLREKLSA-YPIT 61 Query: 72 YPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130 D +IS DGTRK+L + G V IE+V + ++C+SSQVGC + C F Sbjct: 62 ALTQADVRISKIDGTRKYLFQLE----DGNV-IESVLMRYHHGNSVCISSQVGCRMGCRF 116 Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 C + L R L E+L Q+ + G +++N+V+MG GEP Sbjct: 117 CASTIGGLTRCLKPSEMLDQIY-----------------RIQADTGERVANVVVMGTGEP 159 Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSND 249 + N+DN+ + + I +D GL S+R +T+ST G VP + + EE + + LA+SLHA +++ Sbjct: 160 MDNYDNLVRFVRILTDENGLGISQRNVTVSTCGIVPKMYDLAEEKLQITLALSLHAPNDE 219 Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309 R L+PI KY ++ ++DACR+Y RRITFEY ++ G+NDS DA L +KGI Sbjct: 220 KRQELMPIANKYSMDEVLDACRNYFD-KTGRRITFEYSLVAGVNDSEEDARQLAGRIKGI 278 Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +NLIP NP Y+ S ++ + F +++ G + IR G DI ACGQL+ Sbjct: 279 NCHVNLIPVNPIKERSYVRSTRQAVENFKIKLEKYGINVTIRREMGSDIDGACGQLR 335 >gi|148655521|ref|YP_001275726.1| ribosomal RNA large subunit methyltransferase N [Roseiflexus sp. RS-1] gi|205829870|sp|A5UT23|RLMN_ROSS1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|148567631|gb|ABQ89776.1| radical SAM enzyme, Cfr family [Roseiflexus sp. RS-1] Length = 399 Score = 206 bits (524), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 140/401 (34%), Positives = 206/401 (51%), Gaps = 49/401 (12%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN +L + E+E + G P R QI++ +YV + M+D+ + Sbjct: 2 MNQDTLPNLYDLSLAEMERLMTAWGQPA----YRARQIFRQLYVNLVDSPLAMTDLPLAL 57 Query: 61 RHLL--NQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLC 117 R L + + PE V ++ G TRK L R + V IE+V + R T+C Sbjct: 58 RERLVAETRLAPLAPEQV--HVADQGLTRKALFR-----LENGVLIESVLMIYPDRATVC 110 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP---- 173 VS+Q GC + C FC TGT L+RNL+ +I+ QV+ A + F I + P Sbjct: 111 VSTQAGCGMGCVFCATGTLGLLRNLSPGDIVAQVVWAAREMRRFAAERCISPSLAPPDDD 170 Query: 174 -------------------SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSK 214 SV R +SNIV MGMGEP N+D +++ I D GL+ Sbjct: 171 SWWTPDTLEDQGSSEARSISVSR-LSNIVFMGMGEPFANYDRWWRAVEILHDPRGLNMGA 229 Query: 215 RRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY 273 R +T+ST G +P I R+ E + + LAISLHA + LR+ L+P+NR+YPL L++A R Y Sbjct: 230 RSMTVSTVGLIPGIRRLATETLPINLAISLHAPDDALRSALMPVNRRYPLAALLEATRDY 289 Query: 274 PGLSNARRITFEYVMLKGINDSPRDALNLIKILKG------IP---AKINLIPFNPWPGC 324 + RR++FEYV+L+G ND P A L +L G +P +NLIP+NP PG Sbjct: 290 LA-ATGRRVSFEYVLLQGKNDEPEHAAKLAALLHGEAGTTPLPLHLVHVNLIPWNPVPGM 348 Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 S+++ ++TF ++ G + +R RG+ I AACGQL Sbjct: 349 PLGRSERRRVLTFQRILRERGIACTVRVERGVSIAAACGQL 389 >gi|294785829|ref|ZP_06751117.1| radical SAM enzyme, Cfr family [Fusobacterium sp. 3_1_27] gi|294487543|gb|EFG34905.1| radical SAM enzyme, Cfr family [Fusobacterium sp. 3_1_27] Length = 358 Score = 206 bits (524), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 130/376 (34%), Positives = 203/376 (53%), Gaps = 33/376 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +++ + +EEL E L+ +G+ + + + +++ W++ + R F M+++S + R +L Sbjct: 4 EKINILNLTQEELTELLVSLGLKKFYGK----EVFIWLHKKITRSFDEMTNLSLKDREIL 59 Query: 65 NQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLC 117 + I + ++ ++S D T K+L + IETV + K R TLC Sbjct: 60 KEKTYIPFFNLLKYQVSKIDKTEKFLFELEDKGT-----IETVLLRHKDSKNREIRNTLC 114 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 VSSQVGC + CSFC TG +RNL+ EIL Q+ L G Sbjct: 115 VSSQVGCPVKCSFCATGQSGYMRNLSVSEILNQIYTVERRL--------------RKKGE 160 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIG 236 ++N+V MGMGEPL N DN+ KSLSI S+ G++ SKR+IT+STSG V I ++ ++I Sbjct: 161 TLNNLVFMGMGEPLLNIDNLAKSLSIISNENGVNISKRKITISTSGVVSGIEKILLDKIP 220 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 + LAISLH+ N+ R+ ++P+N+ +PLE L Y + RRITFEY+++ N S Sbjct: 221 IELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLVEYQKQT-KRRITFEYILIDNFNISE 279 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRG 355 DA L + +NLIP+N G E+ K I F +K + +R +G Sbjct: 280 TDANALADFIHQFDHVVNLIPYNEVEGVEHTRPSVKKIDKFYNYLKNIRKVNVTLRQEKG 339 Query: 356 LDILAACGQLKSLSKR 371 DI ACGQL+ +K+ Sbjct: 340 SDIDGACGQLRQRNKK 355 >gi|19703861|ref|NP_603423.1| florfenicol resistance protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|81590892|sp|Q8RFZ9|RLMN_FUSNN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|19714019|gb|AAL94722.1| Florfenicol resistance protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 358 Score = 206 bits (523), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 132/376 (35%), Positives = 204/376 (54%), Gaps = 33/376 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +++ + +EEL E L+ +G+ + + + +++ W++ + R F M+++S + R +L Sbjct: 4 EKINILNLTQEELTELLVSLGLKKFYGK----EVFIWLHKKITRSFDEMTNLSLKDREIL 59 Query: 65 NQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLC 117 + I + ++ ++S D T K+L GG IETV + K R TLC Sbjct: 60 KEKTYIPFFNLLKYQVSKIDKTEKFLFELED---GGT--IETVLLRHKDSKNKEIRNTLC 114 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 VSSQVGC + CSFC TG +RNL+ EIL Q+ L G Sbjct: 115 VSSQVGCPVKCSFCATGQSGYMRNLSVSEILNQIYTVERRL--------------RKKGE 160 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIG 236 ++N+V MGMGEPL N DN+ K+LSI S+ G++ SKR+IT+STSG V I ++ ++I Sbjct: 161 NLNNLVFMGMGEPLLNIDNLSKALSIISNENGINISKRKITISTSGVVSGIEKILLDKIP 220 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 + LAISLH+ N+ R+ ++PIN+ +PLE L Y + RRITFEY+++ N S Sbjct: 221 IELAISLHSAINEKRDKIIPINKNFPLEDLSAVLIEYQKQT-KRRITFEYILIDNFNISE 279 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRG 355 DA L + +NLIP+N G E+ K I F +K + +R +G Sbjct: 280 TDANALADFIHQFDHVVNLIPYNEVEGAEHTRPSVKKINKFYIYLKNVRKVNVTLRQEKG 339 Query: 356 LDILAACGQLKSLSKR 371 DI ACGQL+ +K+ Sbjct: 340 SDIDGACGQLRQRNKK 355 >gi|291541044|emb|CBL14155.1| 23S rRNA m(2)A-2503 methyltransferase [Roseburia intestinalis XB6B4] Length = 349 Score = 206 bits (523), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 122/366 (33%), Positives = 200/366 (54%), Gaps = 33/366 (9%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K + M EEL+ + IG R Q+++W++ + F M+++S+ ++ L Sbjct: 4 EKTDIKSMNLEELKSYMESIGEKP----FRAKQLYQWMHEKQAASFDEMTNLSKSIQEKL 59 Query: 65 NQ--HFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 + HF + E V +IS DGTRK+L G V IE+V + K ++C+SSQ Sbjct: 60 KKECHFVSLKQEAV--QISKIDGTRKYLFALD----DGNV-IESVLMRYKHGNSVCISSQ 112 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC + C FC + LVR LT E+L Q+ + G +++N Sbjct: 113 VGCRMGCRFCASTLDGLVRGLTPSEMLDQIY-----------------RITRDTGERVAN 155 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240 +V+MG GEP+ NFDN+ + + + +D GL+ S+R +T+ST G VP + + ++ + + LA Sbjct: 156 VVVMGTGEPMDNFDNLLRFIELLTDENGLNISQRNVTVSTCGIVPKMRELADKKLQITLA 215 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA S + R L+P+ KY + +I+ACR+Y + RR+TFEY ++ G+ND+ D Sbjct: 216 LSLHASSQEKRLELMPVANKYEIHEVIEACRYYFEQT-GRRVTFEYSLVGGVNDTDEDVR 274 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L ++ G+ +NLIP NP Y+ D + I+ F ++++ + IR G DI Sbjct: 275 RLADLIHGMNCHVNLIPVNPIKERSYVQPDHEAILNFKNRLEKNAINVTIRREMGRDIDG 334 Query: 361 ACGQLK 366 ACGQL+ Sbjct: 335 ACGQLR 340 >gi|303233443|ref|ZP_07320111.1| 23S rRNA m2A2503 methyltransferase [Atopobium vaginae PB189-T1-4] gi|302480451|gb|EFL43543.1| 23S rRNA m2A2503 methyltransferase [Atopobium vaginae PB189-T1-4] Length = 403 Score = 206 bits (523), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 120/346 (34%), Positives = 184/346 (53%), Gaps = 23/346 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI W++ I F M++IS+ +R L + F + P +++++S DG+RK+LL Sbjct: 79 FRAKQIEDWLWHYNIGSFDDMTNISKALRAQLAKQFYLYAPRAINKQVSQDGSRKYLL-- 136 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + + +E V +P + ++CVSSQ GC++ C FC TG L RNL A+EI Q L Sbjct: 137 ---LLEDGISVECVGMPNGDKLSVCVSSQAGCAMGCVFCATGKAGLRRNLFADEIYQQAL 193 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 R +D +GM +ISNIV+MG GEPL N+ ++L + ++ +GL Sbjct: 194 FIR---------DDFDGM-------RISNIVLMGQGEPLTNYTQALRALRLFNNPLGLGI 237 Query: 213 SKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 R +TLST G +PNIA+ EE LA+SLH+ R+ L+P +K+ L L + + Sbjct: 238 GARHLTLSTCGIIPNIAKFAQEEEQFTLAVSLHSAVQKTRDYLMPGVKKFSLVNLYNMMQ 297 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 Y + RR ++EY ++KG+ND+P + L +G +NLI N + + + Sbjct: 298 TYVQKTK-RRPSYEYALIKGVNDTPEELQALCDFCRGTLCHVNLIQLNEIDDSPFKPTSE 356 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPR 377 K F + G + IR RG DI AACGQL+ S + K R Sbjct: 357 KRAQEFVRALNACGVEATIRVSRGQDIDAACGQLQQRSCPLNKQKR 402 >gi|330752186|emb|CBL87145.1| radical SAM superfamily protein, UPF0063 [uncultured Flavobacteria bacterium] Length = 349 Score = 206 bits (523), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 122/349 (34%), Positives = 185/349 (53%), Gaps = 19/349 (5%) Query: 18 EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD 77 +EA+++ R Q+++W++ + F M+++S R LLN +F+ E+ Sbjct: 13 QEAIIEFFEAHNEQSFRAKQVYQWLWQKSASSFDEMTNLSISTRALLNANFNFNLLEVDL 72 Query: 78 EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137 + S DGT K ++ +E+V IP + R T CVSSQVGCSL C+FC T + K Sbjct: 73 MQRSKDGTIKNAVKLHDGAF-----VESVLIPTEKRITACVSSQVGCSLDCTFCATASLK 127 Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197 +RNL +EI QV++ + ++ GR ++NIV MGMGEPL N++NV Sbjct: 128 RMRNLGPDEIYDQVVVIHNQGKEY-------------FGRPLTNIVFMGMGEPLLNYNNV 174 Query: 198 KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVP 256 ++ +D GL S RRITLST G I R+ ++ + LAISLH+ + R L+P Sbjct: 175 LAAIEKITDPKGLGLSPRRITLSTIGVPKLIKRMADDGVKFNLAISLHSAIEEKRAKLMP 234 Query: 257 INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLI 316 + K + + Y R +TFEYV+ K +ND+ +D L K IP K+N+I Sbjct: 235 LAHKSATLVDLRESLQYWYAKTGRGVTFEYVIWKDLNDTEQDVKALAKFCGAIPTKVNII 294 Query: 317 PFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +NP Y + Q+ + + E ++ G + IR RG DI AACGQL Sbjct: 295 QYNPIDNGPYTQASQEAVNMYKETLESKGIITTIRHSRGQDIDAACGQL 343 >gi|330752065|emb|CBL80576.1| radical SAM superfamily protein, UPF0063 [uncultured Flavobacteria bacterium] Length = 349 Score = 206 bits (523), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 122/349 (34%), Positives = 185/349 (53%), Gaps = 19/349 (5%) Query: 18 EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD 77 +EA+++ R Q+++W++ + F M+++S R LLN +F+ E+ Sbjct: 13 QEAIIEFFEAHNEQSFRAKQVYQWLWQKSASSFDEMTNLSISTRALLNANFNFNLLEVDL 72 Query: 78 EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137 + S DGT K ++ +E+V IP + R T CVSSQVGCSL C+FC T + K Sbjct: 73 MQRSKDGTIKNAVKLHDGAF-----VESVLIPTEKRITACVSSQVGCSLDCTFCATASLK 127 Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197 +RNL +EI QV++ + ++ GR ++NIV MGMGEPL N++NV Sbjct: 128 RMRNLGLDEIYDQVVVIHNQGKEY-------------FGRPLTNIVFMGMGEPLLNYNNV 174 Query: 198 KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVP 256 ++ +D GL S RRITLST G I R+ ++ + LAISLH+ + R L+P Sbjct: 175 LAAIEKITDPKGLGLSPRRITLSTIGVPKLIKRMADDGVKFNLAISLHSAIEEKRAKLMP 234 Query: 257 INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLI 316 + K + + Y R +TFEYV+ K +ND+ +D L K IP K+N+I Sbjct: 235 LAHKSATLVDLRESLQYWYAKTGRGVTFEYVIWKDLNDTEQDVKALAKFCGAIPTKVNII 294 Query: 317 PFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +NP Y + Q+ + + E ++ G + IR RG DI AACGQL Sbjct: 295 QYNPIDNGPYTQASQEAVNMYKETLESKGIITTIRHSRGQDIDAACGQL 343 >gi|186684082|ref|YP_001867278.1| ribosomal RNA large subunit methyltransferase N [Nostoc punctiforme PCC 73102] gi|205829792|sp|B2J6D0|RLMN_NOSP7 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|186466534|gb|ACC82335.1| radical SAM enzyme, Cfr family [Nostoc punctiforme PCC 73102] Length = 364 Score = 206 bits (523), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 132/368 (35%), Positives = 196/368 (53%), Gaps = 39/368 (10%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+G EL + + G P R Q+ +WIY +G+R +S S++ R + + Sbjct: 24 LLGASVAELSAWVQQQGQPA----YRGKQLHEWIYDKGVRSLADISVFSKQWRAEVAE-I 78 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE--------KSRGTLCVSS 120 I + ++ DGT K+LLR I IETV IP K+R T+CVS+ Sbjct: 79 PIGRSTLHYRSVAPDGTVKYLLRLTDGQI-----IETVGIPTFAERGEGPKARLTVCVST 133 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC + C FC TG RNL EI+ QVL + ED + +++S Sbjct: 134 QVGCPMACDFCATGKGGYKRNLARHEIIDQVLTVQ---------EDFQ--------QRVS 176 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239 N+V MG+GEPL N +NV +L + +G+ +R +T+ST G I + + + + L Sbjct: 177 NVVFMGLGEPLLNTENVLAALKSLNQDIGIG--QRSLTVSTVGIRDRIRQFAQNNLQITL 234 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA + LR L+P R YPLE L+ CR Y ++ RR+TFEYV+L G+ND P A Sbjct: 235 AVSLHAPNQALREKLIPSARAYPLEELLAECREYVEIT-GRRVTFEYVLLAGVNDLPEHA 293 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L L K ++G + +NLIP+NP +Y ++ I F +K+ + +R RGL+ Sbjct: 294 LELSKCMRGFQSHVNLIPYNPIQEVDYKRPNRDRIEAFVNVLKQQNTAVSVRYSRGLEAD 353 Query: 360 AACGQLKS 367 AACGQL++ Sbjct: 354 AACGQLRA 361 >gi|75909016|ref|YP_323312.1| ribosomal RNA large subunit methyltransferase N [Anabaena variabilis ATCC 29413] gi|123772627|sp|Q3M9B9|RLMN_ANAVT RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|75702741|gb|ABA22417.1| 23S rRNA m(2)A-2503 methyltransferase [Anabaena variabilis ATCC 29413] Length = 355 Score = 206 bits (523), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 131/364 (35%), Positives = 192/364 (52%), Gaps = 31/364 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+G EL + + G P R Q+ WIY +G+R +S S++ R + Sbjct: 22 LLGASVTELTSWVQQQGQPA----YRGKQLHDWIYHKGVRSLTDISVFSKQWRAAVAD-V 76 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 I I ++ DGT K+LL+ I +ETV IP R T+CVS+QVGC + C Sbjct: 77 PIGRSTIHHRSVASDGTVKYLLQLSDGEI-----VETVGIPTDKRLTVCVSTQVGCPMAC 131 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG RNL EI+ QVL + ED + +++S++V MGMG Sbjct: 132 DFCATGKGGYKRNLERHEIVDQVLTVQ---------EDFQ--------QRVSHVVFMGMG 174 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVS 247 EPL N +NV +L + +G+ +R +TLST G I+++ E + V LA+SLHA + Sbjct: 175 EPLLNTENVLAALRSLNQDVGIG--QRSLTLSTVGIRDRISQLAEHHLQVTLAVSLHAPN 232 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 LR L+P R Y +E L+ CR Y ++ RRI+FEY++L G+ND P AL L K L+ Sbjct: 233 QALREQLIPSARSYHIEDLLAECREYVAIT-GRRISFEYILLAGVNDLPEHALELSKHLR 291 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 G +NLIP+NP +Y I F +++ + +R RGL+ AACGQL++ Sbjct: 292 GFQNHVNLIPYNPISEVDYKRPSGDRIQAFLTVLQQQHIAVSVRYSRGLEADAACGQLRT 351 Query: 368 LSKR 371 + R Sbjct: 352 KTSR 355 >gi|260494797|ref|ZP_05814927.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium sp. 3_1_33] gi|260197959|gb|EEW95476.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium sp. 3_1_33] Length = 358 Score = 205 bits (522), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 130/376 (34%), Positives = 203/376 (53%), Gaps = 33/376 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +++ + +EEL E L+ +G+ + + + +++ W++ + R F M+++S + R +L Sbjct: 4 EKINILNLTQEELTELLVSLGLKKFYGK----EVFIWLHKKITRSFDEMTNLSLKDREIL 59 Query: 65 NQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLC 117 + I + ++ +IS D T K+L + IETV + K R TLC Sbjct: 60 KEKTYIPFFNLLKHQISKIDRTEKFLFELEDKGT-----IETVLLRHKDSKNKEIRNTLC 114 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 +SSQVGC + CSFC TG +RNL+ EIL QV L G Sbjct: 115 ISSQVGCPVKCSFCATGQSGYMRNLSVSEILNQVYTVERRL--------------RKKGE 160 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIG 236 ++N+V MGMGEPL N DN+ K+LSI S+ G++ SKR+IT+STSG V I ++ ++I Sbjct: 161 TLNNLVFMGMGEPLLNIDNLSKALSIISNENGINISKRKITISTSGVVSGIEKILLDKIP 220 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 + LAISLH+ N+ R+ ++P+N+ +PLE L Y + RRITFEY+++ N S Sbjct: 221 IELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLIEYQKQT-KRRITFEYILIDNFNISE 279 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRG 355 DA L + +NLIP+N G E+ K I F +K + +R +G Sbjct: 280 TDANALADFVHQFDHVVNLIPYNEVEGVEHTRPSVKKIDKFYNYLKNVRRVNVTLRQEKG 339 Query: 356 LDILAACGQLKSLSKR 371 DI ACGQL+ +K+ Sbjct: 340 SDIDGACGQLRQRNKK 355 >gi|294783089|ref|ZP_06748413.1| radical SAM enzyme, Cfr family [Fusobacterium sp. 1_1_41FAA] gi|294479967|gb|EFG27744.1| radical SAM enzyme, Cfr family [Fusobacterium sp. 1_1_41FAA] Length = 358 Score = 205 bits (522), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 129/376 (34%), Positives = 204/376 (54%), Gaps = 33/376 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +++ + +EEL E L+ +G+ + + + +++ W++ + IR+F M+++S + R +L Sbjct: 4 EKVNILNLTQEELTEFLVSLGLKKFYGK----EVFIWLHKKIIRNFDDMTNLSLKDREIL 59 Query: 65 NQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLC 117 ++ I + ++ ++S D T K+L + IETV + + R TLC Sbjct: 60 KENAYIPFFNLLKHQVSKLDKTEKFLFELEDKGT-----IETVLLRHRDSKNKEIRNTLC 114 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 VSSQVGC + CSFC TG +RNL+ EIL QV L Sbjct: 115 VSSQVGCPVKCSFCATGQGGYMRNLSVSEILNQVYTVERRL--------------RKKDE 160 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIG 236 ++N+V MGMGEPL N DN+ +LSI S+ G++ SKR+IT+STSG V I ++ E+I Sbjct: 161 SLNNLVFMGMGEPLLNIDNLSTALSIISNENGINISKRKITISTSGIVSGIEKILLEKIP 220 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 + LA+SLH+ N+ R+ ++PIN+ +PLE L Y + RRITFEY+++ N S Sbjct: 221 IELAVSLHSAINEKRDQIIPINKNFPLEDLSAVLVEYQKQT-KRRITFEYILIDNFNISE 279 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRG 355 DA L + +NLIP+N G E+ K I F +K + +R +G Sbjct: 280 VDANALADFIHQFDHVVNLIPYNEVEGVEHKRPSMKKIDRFYNYLKNVRKVNVTLRQEKG 339 Query: 356 LDILAACGQLKSLSKR 371 DI ACGQL+ +K+ Sbjct: 340 SDIDGACGQLRQRNKK 355 >gi|313891997|ref|ZP_07825598.1| 23S rRNA m2A2503 methyltransferase [Dialister microaerophilus UPII 345-E] gi|313119640|gb|EFR42831.1| 23S rRNA m2A2503 methyltransferase [Dialister microaerophilus UPII 345-E] Length = 344 Score = 205 bits (522), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 128/358 (35%), Positives = 198/358 (55%), Gaps = 29/358 (8%) Query: 11 GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70 G +ELEE + P + R QI ++Y R I F M + + +R L ++ SI Sbjct: 7 GKSLKELEEYITLNNFP----KFRAKQIHDYLYHRCIFTFDEMKQLPKNMREWLKENASI 62 Query: 71 IYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129 PE+++ S DG T K L + + ETV + K ++CVS+Q+GC++ C Sbjct: 63 YIPEVINSIQSNDGNTTKILFKLKDGSLA-----ETVCMHHKYGNSICVSTQIGCAMGCI 117 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 FC + L RNLT E+L QV + L ++I + +IV+MG GE Sbjct: 118 FCASTRNGLERNLTFGEMLSQVYAFKKL-------KNIS----------VHSIVLMGAGE 160 Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248 PL N++N K + + +DS L+ S R ITLST G VP I R+ +E + + LAISLHA ++ Sbjct: 161 PLTNYENCLKFIKLCNDSSILNISYRNITLSTCGIVPQIYRLEKENLPITLAISLHAPND 220 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 +RN ++P ++ + +E +I A +HY + RRITFEY+++KGIN +P A+ L K++ Sbjct: 221 KIRNEILPSSKHFKIEDVIRASKHYFE-NTGRRITFEYILIKGINAAPEHAVELAKLVGN 279 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + INLIP N + +K+I F + +++ G S+ +R G +I AACGQLK Sbjct: 280 LNCHINLIPVNGTEHIQLFAPSKKEIFEFQQILEKMGKSATVRRQMGNEIQAACGQLK 337 >gi|317011560|gb|ADU85307.1| ribosomal RNA large subunit methyltransferase N [Helicobacter pylori SouthAfrica7] Length = 357 Score = 205 bits (522), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 129/354 (36%), Positives = 196/354 (55%), Gaps = 31/354 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R Q++ W+Y + F+ M ++ S++ L Q F++ EI + S DG++K+L + Sbjct: 21 FRAKQLYLWLYAKYKTSFKDMQNNFSKDFIASLEQEFTLRTIEITHVRESVDGSKKYLFK 80 Query: 92 -------FPA---RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141 F A + ++ ET I E + T+CVS Q+GC + CSFC+T VR+ Sbjct: 81 SLRDNHTFEAVLLKMKDKKIDGETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGFVRD 140 Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 L A EI+ Q LL + E +P K NIV MGMGEPL N D V K++ Sbjct: 141 LKASEIVQQALLIK------------EDNNLPI--EKALNIVFMGMGEPLNNLDEVCKAI 186 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRK 260 I + G+ S +RIT+STSG I + + +GV LAISLHAV + R+ L+P+N+K Sbjct: 187 EIFN--TGMQISPKRITISTSGVADKIPILASKNLGVQLAISLHAVDDKTRSSLMPLNKK 244 Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 Y +E +++ + +P L +R+ FEY+++K +NDS A L+K+L GI +K+NLI FNP Sbjct: 245 YNIECVLNEVKKWP-LEQRKRVMFEYLLIKNLNDSLDCAKKLLKLLNGIKSKVNLILFNP 303 Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL--KSLSKRI 372 G ++ + F++ + G IR + LDI AACGQL K L ++I Sbjct: 304 HEGSKFERPSLESARMFADFLNSKGLLCTIRESKALDIEAACGQLREKKLQQKI 357 >gi|46446329|ref|YP_007694.1| hypothetical protein pc0695 [Candidatus Protochlamydia amoebophila UWE25] gi|46399970|emb|CAF23419.1| conserved hypothetical protein [Candidatus Protochlamydia amoebophila UWE25] Length = 330 Score = 205 bits (522), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 126/326 (38%), Positives = 179/326 (54%), Gaps = 20/326 (6%) Query: 41 WIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGP 100 WIY +G+ + MS++SQ +R L +H + E+V S D + ++F R G Sbjct: 3 WIYQKGVLSWDKMSNLSQSLREKLAKHIRLPVLELVRYTESID---QETIKFLWRLRDGN 59 Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160 + +E+V I R T+CVSSQVGC C+FC +G Q RNL EI+ Q+L + L Sbjct: 60 L-VESVLILSGIRRTVCVSSQVGCPAKCAFCASGQQGFFRNLRPTEIIEQILQINAWLS- 117 Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLS 220 S G K+S++V MGMGEPL N+++V S+ + S + S+RRIT+S Sbjct: 118 -------------SKGEKVSHVVYMGMGEPLKNYESVVASIRVLSHPDFCNISQRRITVS 164 Query: 221 TSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279 T G V I R+ +E + V L +SLHA + +R ++P RKYPLE ++++ Y Sbjct: 165 TVGVVEGIKRLSKEGLKVNLVLSLHAPNQHIRKKIIPYARKYPLEEILESMDEY-AQKTK 223 Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSE 339 R ITFEY +L GIND P A L +LKG +NLIP+NP PG ++K I F Sbjct: 224 RDITFEYTLLAGINDHPDHAHELAHLLKGKQCTVNLIPYNPIPGLRLKRPEKKAIKQFRS 283 Query: 340 CIKRSGYSSPIRTPRGLDILAACGQL 365 + S + R +G DI AACGQL Sbjct: 284 VLYGSHIVNTCRYTKGDDIGAACGQL 309 >gi|297624942|ref|YP_003706376.1| radical SAM domain-containing protein [Truepera radiovictrix DSM 17093] gi|297166122|gb|ADI15833.1| radical SAM enzyme, Cfr family [Truepera radiovictrix DSM 17093] Length = 349 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 117/333 (35%), Positives = 172/333 (51%), Gaps = 21/333 (6%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93 R +Q+ W+Y RG ++ M+++ + R L + + ++ +S D + ++LL P Sbjct: 24 RRAQLAAWLYQRGALSWEAMTNLPRAWRAELGARYRLSPFVRLERFVSADASVRYLLTLP 83 Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153 + E VY+P + R TLCVSS VGC C+FC TG RNL+ EIL Q+L+ Sbjct: 84 -----DGKQTEAVYMPYRGRKTLCVSSMVGCPAGCAFCATGALGFGRNLSRAEILGQLLV 138 Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213 G P R+I N+V+MGMGE L N+DN ++ GL S Sbjct: 139 VAQAEGIAP--------------REIRNVVLMGMGEALLNYDNALGAIRTMIHPEGLDMS 184 Query: 214 KRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 RRITLST G I R+ E + ++LA+SLHA R ++P + +E +I A Sbjct: 185 PRRITLSTVGLPGRIRRLAAERLPLVLAVSLHAPDEKTRREIIPTAHAHAIEEIIAALHD 244 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 + + RR+T EY ML G+ND+ A L+ +L+G+ +NLIPFNPW + S + Sbjct: 245 WQA-AGGRRVTIEYTMLAGVNDALWQAEALVALLRGLVVHVNLIPFNPWGASPFRSSSRA 303 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I F + +G S +R RG D ACGQL Sbjct: 304 QIARFERVLTGAGLSVSVRFSRGRDTGGACGQL 336 >gi|293374997|ref|ZP_06621292.1| radical SAM enzyme, Cfr family [Turicibacter sanguinis PC909] gi|325843362|ref|ZP_08167945.1| 23S rRNA m2A2503 methyltransferase [Turicibacter sp. HGF1] gi|292646407|gb|EFF64422.1| radical SAM enzyme, Cfr family [Turicibacter sanguinis PC909] gi|325489391|gb|EGC91764.1| 23S rRNA m2A2503 methyltransferase [Turicibacter sp. HGF1] Length = 347 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 117/341 (34%), Positives = 192/341 (56%), Gaps = 21/341 (6%) Query: 28 QRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRK 87 Q+ + R +QI+ W++ + + MS++ ++++ L+ + F + + ++++ DGT K Sbjct: 21 QKQPKFRANQIFDWLFKKRVTSIDEMSNLPKDLKGLMQESFDVTTLKERKKQVASDGTTK 80 Query: 88 WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147 +L + IETV + K ++CV++QVGC + C FC + L RNL A EI Sbjct: 81 FLFELSDGDL-----IETVLMRHKYGCSVCVTTQVGCRIGCKFCASTLSGLKRNLQAGEI 135 Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207 + QVL + L + ++S+IV+MG+GEP N++N+ K + I + Sbjct: 136 VAQVLRVQQYLDESQ--------------ERVSHIVVMGIGEPFENYENLTKFIEIINSE 181 Query: 208 MGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEML 266 GL+ R IT+STSG VP I ++ V A+SLHA +++LR L+PINR YPLE L Sbjct: 182 KGLNIGSRHITVSTSGIVPKIYNFADQHPQVSFAVSLHAPTDELRTQLMPINRAYPLEKL 241 Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 ++A ++Y +N RRITFEY ++K +ND+ A L ++ + INLIP N P + Sbjct: 242 MEAVKYYIKQTN-RRITFEYGLIKNVNDTVECANQLADLVGRLNCHINLIPVNYVPERGF 300 Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 + + I F + +K+ G + +R G DI AACGQL++ Sbjct: 301 DRTPIEHIEKFEQTLKKRGVNVTVRRELGSDIDAACGQLRA 341 >gi|254442505|ref|ZP_05055981.1| radical SAM enzyme, Cfr family [Verrucomicrobiae bacterium DG1235] gi|198256813|gb|EDY81121.1| radical SAM enzyme, Cfr family [Verrucomicrobiae bacterium DG1235] Length = 368 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 132/376 (35%), Positives = 198/376 (52%), Gaps = 27/376 (7%) Query: 1 MNFL-KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59 M +L +K + G E L+ ++G P + R Q+ +W+Y + + M+++ + Sbjct: 1 MKYLPEKPPIYGETLESLQARFAELGEP----KFRAKQVLEWLYKKRAETWDAMTNLPKP 56 Query: 60 VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYI--------PEK 111 +R L F I + V K S D T K LL+ +G IETV I E Sbjct: 57 LREKLAAAFEIAPSKRVLAKESSDETEKLLLQ-----MGDNSMIETVVIRAPQIGVGQEN 111 Query: 112 SRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMV 171 SR T+C+S+QVGC+ C FC +G R+L+ EI+ Q++ + ED Sbjct: 112 SRKTICISTQVGCAYGCKFCASGLLGWKRDLSVGEIVSQLIHVCHM-------EDATTER 164 Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231 NIV+MGMGEP+ N+ N+ +L I + GL+F RRIT+STSG VP I + Sbjct: 165 ASEEIASFDNIVVMGMGEPMANYKNLLPALRILNADWGLNFGARRITISTSGVVPRILEL 224 Query: 232 GEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 +E LA+SLH +N++R+ ++P+NRKYPLE L+ A + Y + R IT E+++++ Sbjct: 225 ADEREQFRLAVSLHGATNEVRDQIMPVNRKYPLEKLLPAIQKY-AQTKGRMITLEFILIE 283 Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI 350 IND+ A L KI + A +NLIP+N G ++ F +K G S+ I Sbjct: 284 EINDTLEQADALTKIALDLKAHVNLIPYNTVDGLDWKRPSITRQDVFYNRLKNRGVSATI 343 Query: 351 RTPRGLDILAACGQLK 366 R +G DI AACGQLK Sbjct: 344 RREKGHDIAAACGQLK 359 >gi|325955527|ref|YP_004239187.1| ribosomal RNA large subunit methyltransferase N [Weeksella virosa DSM 16922] gi|323438145|gb|ADX68609.1| Ribosomal RNA large subunit methyltransferase N [Weeksella virosa DSM 16922] Length = 348 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 126/372 (33%), Positives = 209/372 (56%), Gaps = 25/372 (6%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN KK+ + + +++LE IG R Q+++W++ + DF M+++S+ + Sbjct: 1 MNPTKKD-IRKLSQQDLEVYFQSIG----EKAFRGKQVYEWLWKKNAHDFNDMTNLSKNL 55 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L+ F I E+ + S DGT ++ + G V +E+V IP ++R T C+SS Sbjct: 56 RENLDAAFRIQPVEVDFLQKSNDGT----IKNAVKLHDGNV-VESVLIPTETRTTACISS 110 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGCSL C+FC T K +RNLTA EI+ QV++ I+ R +S Sbjct: 111 QVGCSLDCTFCATAQLKRMRNLTAAEIVDQVVI-------------IDRESREYFDRPLS 157 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239 NIV MGMGEPL N+ V +++ + GL S RRITLSTSG I ++ E++ + L Sbjct: 158 NIVFMGMGEPLLNYTEVVEAIKKITLPEGLGMSPRRITLSTSGIPKMIEKLADEDLKIGL 217 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH+ ++RN ++P + K+PL L+ + +++ + + +ITFEY++ K IND D Sbjct: 218 AVSLHSAREEIRNKIMPFSVKFPLTDLLKSLQYWYDTTKS-KITFEYIVWKDINDKKEDI 276 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L++ K +P+K+N+I +N Y + + + + + ++++G +R RG DI Sbjct: 277 DALVRFCKRVPSKVNIIEYNTIDDGPYQQASPQVLNAYIDALEKNGIIVNVRRSRGKDID 336 Query: 360 AACGQLKSLSKR 371 AACGQL + + + Sbjct: 337 AACGQLANKTTK 348 >gi|255016116|ref|ZP_05288242.1| hypothetical protein B2_19608 [Bacteroides sp. 2_1_7] gi|256842536|ref|ZP_05548038.1| ribosomal RNA large subunit methyltransferase N [Parabacteroides sp. D13] gi|256735892|gb|EEU49224.1| ribosomal RNA large subunit methyltransferase N [Parabacteroides sp. D13] Length = 334 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 133/358 (37%), Positives = 183/358 (51%), Gaps = 33/358 (9%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI- 70 M EEL+ ++G+P + Q+ WIY + I M++I+ R LL F I Sbjct: 1 MTLEELKGVASEVGLPAYAAK----QMADWIYKKKITRISEMTNIAVAKRALLEDSFEIG 56 Query: 71 IYPEIVDEKISCDGTRKWLLRFPARCIGGPVE-IETVYIPEKSRGTLCVSSQVGCSLTCS 129 YP +K S DGT K+L GP +E+VYIP R TLCVSSQVGC + C Sbjct: 57 AYPPSEYQK-SKDGTIKYLYA------AGPGRFVESVYIPTDDRATLCVSSQVGCKMNCL 109 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 FC TG Q NLTA +IL Q+ +P ++NIV MGMGE Sbjct: 110 FCMTGKQGFTANLTANQILNQI------------------QSLPE-NDSLTNIVFMGMGE 150 Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSND 249 PL N D + K L I + G ++S +RIT+ST G + R EE LA+SLH+ Sbjct: 151 PLDNVDELFKVLEILTAPYGYAWSPKRITVSTIGVTKGLKRFLEESECHLAVSLHSPYPM 210 Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309 R L+P+ + +P +ID + Y S+ RR++FEY++ K +NDS + A L +L GI Sbjct: 211 ERLSLMPVEKAFPAREVIDLIKQY-DFSHQRRVSFEYIVFKNLNDSLKHAEALSCLLGGI 269 Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 P ++NLI F+ P SD + F + + G IR RG DI AACG L + Sbjct: 270 PCRVNLIRFHAIPNVSLETSDIAKMEAFRDFLNAKGVVCTIRASRGEDIFAACGMLST 327 >gi|332708170|ref|ZP_08428163.1| 23S rRNA m(2)A-2503 methyltransferase [Lyngbya majuscula 3L] gi|332353072|gb|EGJ32619.1| 23S rRNA m(2)A-2503 methyltransferase [Lyngbya majuscula 3L] Length = 351 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 131/360 (36%), Positives = 192/360 (53%), Gaps = 31/360 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+G EL + + G P R Q+ WIY +G+R +S ++ R+ + Sbjct: 18 LLGASLVELTSWIQEQGQPA----YRGRQLHGWIYEKGVRSLSEISVFPKQWRNTVAD-V 72 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 I + + DGT K+LL+ I IETV IP R T+CVSSQVGC + C Sbjct: 73 PIGRSRLHYRLEAKDGTVKYLLQLSDGQI-----IETVGIPTPKRLTVCVSSQVGCPMAC 127 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG RNL EI+ QVL R ED + ++SN+V MGMG Sbjct: 128 DFCATGKGGFTRNLARHEIVDQVLTVR---------EDFQ--------ERVSNVVFMGMG 170 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVS 247 EPL N + V ++ + +G+ R +T+ST G I ++ + ++ V LA+SLHA + Sbjct: 171 EPLLNTEAVVGAVKSLNQDLGIG--ARSLTISTVGIPGRIRQLAQHQLQVTLAVSLHASN 228 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 LR L+P + YPL+ L+D CR Y L+ +RR+TFEY++L G+ND A+ L K L+ Sbjct: 229 QQLREQLIPSAKHYPLKALLDECRDYVNLT-SRRVTFEYILLGGLNDCREHAVELAKNLR 287 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 G + +NLIP+NP +Y + + I F E +K+ + +R RGLD AACGQL++ Sbjct: 288 GFQSHVNLIPYNPISEVDYQRPNYRRIQGFVEALKQQHIAVSVRHSRGLDKDAACGQLRA 347 >gi|153809821|ref|ZP_01962489.1| hypothetical protein RUMOBE_00202 [Ruminococcus obeum ATCC 29174] gi|149833999|gb|EDM89079.1| hypothetical protein RUMOBE_00202 [Ruminococcus obeum ATCC 29174] Length = 346 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 124/357 (34%), Positives = 197/357 (55%), Gaps = 30/357 (8%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 M +EL+E + +IG R QI+ W++ + + M+++ + ++ L + I Sbjct: 7 MTIDELKELMTQIG----EKPFRAKQIYSWLHEHLVTSYDEMANLPKNLKQKL-ADYPIT 61 Query: 72 YPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130 E +D +IS DGTRK+L R + IE+V + K ++C+SSQ GC + C F Sbjct: 62 ALETLDVQISKVDGTRKYLFRLSDGNM-----IESVLMRYKYGNSVCISSQAGCRMGCRF 116 Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 C + L RNL E+L Q+ ++ S+G +ISN+V+MG GEP Sbjct: 117 CASTIGGLTRNLLPSEMLDQIYRIQT-----------------SIGERISNVVVMGTGEP 159 Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSND 249 L N+DN+ + + I ++ G+ S+R +T+ST G VP I + EE + + LA+SLHA +++ Sbjct: 160 LDNYDNLLRFIHILTEDGGIHISQRNLTVSTCGLVPKIYELAEEKLQMTLAVSLHAPNDE 219 Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309 R L+PI KY ++ L+ ACR+Y RRITFEY ++ G+NDS +A L LKG+ Sbjct: 220 KRRELMPIANKYSIDELLAACRNYFD-KTGRRITFEYSLVAGVNDSKENAQELAGRLKGL 278 Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +NLIP NP ++ S ++ + F +++ G + IR G DI ACGQL+ Sbjct: 279 NCHVNLIPVNPVRERSFVRSTREAVENFKINLEKCGINGTIRREMGSDIDGACGQLR 335 >gi|116071168|ref|ZP_01468437.1| hypothetical protein BL107_16020 [Synechococcus sp. BL107] gi|116066573|gb|EAU72330.1| hypothetical protein BL107_16020 [Synechococcus sp. BL107] Length = 348 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 130/366 (35%), Positives = 192/366 (52%), Gaps = 37/366 (10%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR-HLLNQH 67 L+G ELE+ I Q H R QI W+Y +G++ ++ + ++ R L +Q Sbjct: 5 LLGRSAAELED----WAIAQGHKSFRGRQIHDWLYNKGVKSLSEITALPKQWRTELEDQT 60 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F + ++V + ++ D T K LL IETV IP R T+C+SSQVGC + Sbjct: 61 FRVGRLKLVHQSVAADATTKLLL-----ATDDGETIETVGIPTDQRLTVCISSQVGCPMA 115 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC TG L R+L EI+ QVL R ++ R+ S+IV MGM Sbjct: 116 CRFCATGKSGLQRSLATHEIVDQVLSVRE-----------------AMDRRPSHIVFMGM 158 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF---VPNIARVG-EEIG---VMLA 240 GEPL N V +++ + +G+ +RRIT+ST G +P +A + E++G LA Sbjct: 159 GEPLLNSAAVLETIRCLNTDLGIG--QRRITVSTVGVPKTLPQLAELAMEKLGRAQFTLA 216 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA + LR L+P YP + L+D CRHY L+ RR++FEY++L +ND P A Sbjct: 217 VSLHAPNQQLREELIPTAHAYPYDDLLDDCRHYLDLT-GRRVSFEYILLGELNDHPEHAA 275 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L + G + +NLI +NP E+ + I F ++R G + +R RGLD A Sbjct: 276 ELADRVGGFQSHVNLIAYNPIEEEEFKRPTTQRIEAFRRVLERRGIAVSLRASRGLDQNA 335 Query: 361 ACGQLK 366 ACGQL+ Sbjct: 336 ACGQLR 341 >gi|303237669|ref|ZP_07324229.1| 23S rRNA m2A2503 methyltransferase [Prevotella disiens FB035-09AN] gi|302482121|gb|EFL45156.1| 23S rRNA m2A2503 methyltransferase [Prevotella disiens FB035-09AN] Length = 346 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 126/369 (34%), Positives = 196/369 (53%), Gaps = 29/369 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ L+GM EL+ ++G+P Q+ KW+Y + + M++IS++ R L Sbjct: 5 KKPLVGMNLLELKNVAKELGMPA----FTGGQMAKWLYTQHVTSIDEMTNISKDNREKLK 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++++I + +D + S DGT K+L FP G +E+VYIP+++R TLCVSSQVGC Sbjct: 61 ENYTIGCKKHIDAQYSKDGTIKYL--FPTD--NGKF-VESVYIPDENRATLCVSSQVGCK 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q NLT +IL Q+ P E K++NIV M Sbjct: 116 MNCLFCQTGKQGFEGNLTTADILNQIY-------SLPERE------------KLTNIVFM 156 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 G GEP+ N+DNV K+ + + ++S +RIT+S+ G + R EE +AIS+H Sbjct: 157 GQGEPMDNYDNVLKTTQLLTADYAYAWSPKRITVSSIGIKSKLKRFLEESDCHVAISMHN 216 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + R ++P + + +++ R+Y S+ RR++FEY++ KG NDS A +IK+ Sbjct: 217 PIPEERIEVMPSEKAMSITEIVEMLRNYD-FSHQRRLSFEYIVFKGKNDSVDHAKAIIKL 275 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 ++G+ + NLI F+ P D K + F + G + IR RG DI AACG L Sbjct: 276 VEGLECRFNLIRFHTIPNVPLQGVDDKKMEEFRNYLTAHGVFTTIRASRGQDIFAACGLL 335 Query: 366 KSLSKRIPK 374 + K K Sbjct: 336 STAKKNANK 344 >gi|308234069|ref|ZP_07664806.1| 23S rRNA m(2)A-2503 methyltransferase [Atopobium vaginae DSM 15829] gi|328943466|ref|ZP_08240931.1| cfr family radical SAM enzyme [Atopobium vaginae DSM 15829] gi|327491435|gb|EGF23209.1| cfr family radical SAM enzyme [Atopobium vaginae DSM 15829] Length = 416 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 120/367 (32%), Positives = 192/367 (52%), Gaps = 36/367 (9%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K + + ++L L +G P R QI W++ + R F M+++S+++R L Sbjct: 72 QKVEIRSLNHDQLTYELTSMGEPA----FRVKQIEAWLWQKNARSFDDMTNLSKKLRARL 127 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFP----ARCIGGPVEIETVYIPEKSRGTLCVSS 120 + F++ P +V +++S DG+RK+LLRF A C+G +P K++ +CVS+ Sbjct: 128 KEKFALYSPALVSKQVSQDGSRKYLLRFQDGVMAECVG---------MPTKNKLAICVST 178 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC++ C FC TG L R+LT EI Q L + DF +++ Sbjct: 179 QAGCAIGCVFCATGKAGLTRSLTGYEIYEQALF---IQDDFQ--------------MRVA 221 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVML 239 + V+MG GEPL N++ +L + + ++GL R +T+ST G +PNI + E L Sbjct: 222 SAVLMGQGEPLTNYNASIFALKMMNSAIGLGVGARHLTISTCGILPNIIKFSHEKEQFTL 281 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH+ R+ L+P +++ L+ L D Y + RR T+EY ++KG+ND+ + Sbjct: 282 AVSLHSAVQSTRDYLMPGVKRFNLQHLHDTMNLYVE-ATGRRPTYEYALIKGVNDTDEEL 340 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L G A +NLI N +L + +K F + +KR G + IR RG DI Sbjct: 341 AALCDFCAGTLAHVNLIQLNKIDDSPFLPTSEKRAEHFVKTLKRFGVEATIRHSRGADID 400 Query: 360 AACGQLK 366 AACGQLK Sbjct: 401 AACGQLK 407 >gi|189500366|ref|YP_001959836.1| radical SAM enzyme, Cfr family [Chlorobium phaeobacteroides BS1] gi|254807163|sp|B3EJF5|RLMN_CHLPB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|189495807|gb|ACE04355.1| radical SAM enzyme, Cfr family [Chlorobium phaeobacteroides BS1] Length = 362 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 129/381 (33%), Positives = 204/381 (53%), Gaps = 34/381 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K ++ R+EL + + +G P R QI +W++ + DF+ M +IS +R L+ Sbjct: 5 KTNIKAYTRQELRDTIAALGEPA----YRADQIHRWLFSDWVTDFEKMKNISASLREELS 60 Query: 66 QHFSI----IYPEIVDEK-ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 + + I E ++E+ +S T K+L+ + +ETV IP R T+CVSS Sbjct: 61 RRYVIPSCSFENEAIEERSVSAPETSKFLV-----GLHDDEMVETVLIPSPDRHTVCVSS 115 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC L C+FC TG RNL A EI+ QVLL LGD S ++ Sbjct: 116 QVGCPLRCTFCATGYMGFTRNLLASEIVEQVLLVNERLGD------------RSPDNHVT 163 Query: 181 NIVMMGMGEPLCNFDNVKKSL-SIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238 N+V MGMGEPL N +NV ++ ++ + S S S++RIT+ST G +P I + + + Sbjct: 164 NMVFMGMGEPLLNLNNVFDAIETLTNQSYNFSLSRKRITISTVGLIPQIGELARSGLSIK 223 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LAISLHA + R L+P+ +++ LE L A Y + +T Y++++G+ND+ +D Sbjct: 224 LAISLHAADQEKRTSLIPVAKEHTLEELRHALHEYADMVK-EPVTLVYMLIEGVNDADQD 282 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEY--LCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 A+NLI+ +G KINLI +N ++ + ++++D F + +G +R +G Sbjct: 283 AINLIRFAQGFLCKINLIDYNCIVNVKFNPVKAEKRD--RFIHTLVNAGVHVTVRKSQGA 340 Query: 357 DILAACGQLKSLSKRIPKVPR 377 I AACGQL +L K+ R Sbjct: 341 SIDAACGQL-ALQKKNKTASR 360 >gi|315453551|ref|YP_004073821.1| putative radical-SAM-proteins [Helicobacter felis ATCC 49179] gi|315132603|emb|CBY83231.1| Putative radical-SAM-proteins [Helicobacter felis ATCC 49179] Length = 356 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 124/342 (36%), Positives = 189/342 (55%), Gaps = 32/342 (9%) Query: 35 TSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR-FP 93 Q + W+Y R M ++ + + F + E+++ + S D + K+L + F Sbjct: 29 AKQFYAWLYQR-YASLDQMHNLPHAFKEAVCADFEVRPLEVLECQQSADKSVKYLFKTFD 87 Query: 94 ARCIGGPVEIETVYI--------PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAE 145 E+VY+ + + TLC+S Q+GC + C FC T VRNL A Sbjct: 88 GH------SFESVYMVMREAREGEAQEKITLCLSCQIGCKVGCVFCATAKGGFVRNLNAG 141 Query: 146 EILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS 205 EI+ QV+ + +E P+ G N+V MGMGEPL NF+ V +L I S Sbjct: 142 EIVEQVVALKR-------AHQLE----PTRG---INLVFMGMGEPLHNFEQVVHALEILS 187 Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLE 264 GL+ + RRIT+STSG VP + +G +GV LAISLHAV++ LR+ L+PIN+ Y L+ Sbjct: 188 THEGLNIAPRRITISTSGVVPALQTLGALNLGVQLAISLHAVNDSLRSKLMPINKVYNLQ 247 Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGC 324 LI+A + +P L +R+ FEY+M+K +NDS A L+++L G+ AKINLIP+N P Sbjct: 248 ALINALKAFP-LDKRKRVMFEYLMIKDVNDSLSHAKELLRLLNGLKAKINLIPYNSTPHS 306 Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 ++ + + + F++ + + G IR +G DI AACGQL+ Sbjct: 307 KFERPELERVQAFADFLNQKGLLCTIRISKGQDIAAACGQLR 348 >gi|23100552|ref|NP_694019.1| hypothetical protein OB3097 [Oceanobacillus iheyensis HTE831] gi|81745262|sp|Q8ELW7|RLMN_OCEIH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|22778785|dbj|BAC15053.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 355 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 130/377 (34%), Positives = 212/377 (56%), Gaps = 32/377 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K S+ G+ E+L++ L++ G R R Q+W W+Y + I F M++++Q L Sbjct: 1 MSKSSIYGLTYEKLKDWLIEHGEK----RFRAEQVWNWLYKKRINSFDEMNNVNQSAIQL 56 Query: 64 LNQHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L +F + + EI E S DGT K+L + + IETV + ++CV++Q Sbjct: 57 LKDNFVLHTMGEEIRQE--SQDGTIKFLFKLEDGNL-----IETVLMRFHYGLSVCVTTQ 109 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC++ C+FC +G + R+L++ E++ Q++ + L D G +D ++S+ Sbjct: 110 VGCNIGCTFCASGLLRKSRDLSSGEVVEQIMNVQKHL-DERGEKD-----------RVSH 157 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240 IV+MG+GEP N++N+ L +D GL+ R IT+STSG I ++ I V LA Sbjct: 158 IVVMGIGEPFDNYNNLMDFLYTVNDDRGLNIGARHITVSTSGLAHKIYEFADDPIQVNLA 217 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ISLHA +++LR ++ INR +P++ L+ + +Y N RRIT+EY+ML +ND ++A+ Sbjct: 218 ISLHAPNDELRTKIMKINRAFPIDKLMKSVDYYLQKKN-RRITYEYIMLDDVNDHKKEAI 276 Query: 301 NLIKILKGIP--AKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 L ++K A +NLIP+N +Y S ++I F E + G + +R G D Sbjct: 277 ELANLIKNHRHLAYVNLIPYNTVDEHIDYRRSKSENIQAFYETLTELGINCGVRWENGAD 336 Query: 358 ILAACGQLKSLSKRIPK 374 I AACGQL+ SK+I K Sbjct: 337 IDAACGQLR--SKQIKK 351 >gi|256026775|ref|ZP_05440609.1| florfenicol resistance protein [Fusobacterium sp. D11] gi|289764771|ref|ZP_06524149.1| radical SAM family enzyme [Fusobacterium sp. D11] gi|289716326|gb|EFD80338.1| radical SAM family enzyme [Fusobacterium sp. D11] Length = 358 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 130/376 (34%), Positives = 203/376 (53%), Gaps = 33/376 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +++ + +EEL E L+ +G+ + + + +++ W++ + R F M+++S + R +L Sbjct: 4 EKINILNLTQEELTELLVSLGLKKFYGK----EVFIWLHKKITRSFGEMTNLSLKDREIL 59 Query: 65 NQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLC 117 + I + ++ +IS D T K+L + IETV + K R TLC Sbjct: 60 KEKTYIPFFNLLKHQISKIDRTEKFLFELEDKGT-----IETVLLRHKDSKNKEIRNTLC 114 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 VSSQVGC + CSFC TG +RNL+ EIL Q+ L G Sbjct: 115 VSSQVGCPVKCSFCATGQSGYMRNLSVSEILNQIYTIERRL--------------RKKGE 160 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIG 236 ++N+V MGMGEPL N DN+ K+LSI S+ G++ SKR+IT+STSG V I ++ ++I Sbjct: 161 TLNNLVFMGMGEPLLNIDNLSKALSIISNENGINISKRKITISTSGVVSGIEKILLDKIP 220 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 + LAISLH+ N+ R+ ++P+N+ +PLE L Y + RRITFEY+++ N S Sbjct: 221 IELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLIEYQKQT-KRRITFEYILIDNFNISE 279 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRG 355 DA L + +NLIP+N G E+ K I F +K + +R +G Sbjct: 280 TDANALADFVHQFDHVVNLIPYNEVEGVEHTRPSVKKIDKFYNYLKNVRKVNVTLRQEKG 339 Query: 356 LDILAACGQLKSLSKR 371 DI ACGQL+ +K+ Sbjct: 340 SDIDGACGQLRQRNKK 355 >gi|158337109|ref|YP_001518284.1| radical SAM protein [Acaryochloris marina MBIC11017] gi|205829656|sp|B0C9F4|RLMN_ACAM1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|158307350|gb|ABW28967.1| radical SAM enzyme, Cfr family [Acaryochloris marina MBIC11017] Length = 351 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 119/335 (35%), Positives = 181/335 (54%), Gaps = 27/335 (8%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93 R Q+ +WIY +G+ ++ + ++ R + + +I + DGT K+LL+ Sbjct: 34 RGQQVHQWIYQKGVHSLSDITVLPKQWRTEIAD-IPVGRSQIHHRSAAQDGTVKYLLKLA 92 Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153 I IETV IP + R T+CVSSQVGC + C FC TG + RNL EI+ QVL Sbjct: 93 DGQI-----IETVGIPTQKRLTVCVSSQVGCPMGCDFCATGKGEYQRNLACHEIVDQVLT 147 Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213 + ED + +++ N+V MGMGEPL N + V ++ + +G+ Sbjct: 148 VQ---------EDFQ--------QRVGNVVFMGMGEPLLNLEQVLAAVRSLNQDVGIG-- 188 Query: 214 KRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 +R +T+ST G I ++ + ++ + LA+SLHA + +R LVP + YPLE L+ CR Sbjct: 189 QRSLTVSTVGIPKQILKLAQHQLQITLAVSLHASNQRIRTQLVPSAKHYPLEKLLKDCRA 248 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y RR+TFEY++L G+ND AL L L+G + +NLIP+NP +Y QK Sbjct: 249 YV-TQTGRRVTFEYIVLSGVNDQTEHALELAHHLRGFQSHVNLIPYNPISEVDYQRPTQK 307 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 + F ++ ++ IR RGLD AACGQL++ Sbjct: 308 QLQQFLNSLQSQHITASIRRSRGLDKDAACGQLRA 342 >gi|291557812|emb|CBL34929.1| 23S rRNA m(2)A-2503 methyltransferase [Eubacterium siraeum V10Sc8a] Length = 338 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 121/371 (32%), Positives = 208/371 (56%), Gaps = 37/371 (9%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K ++ + +EELEE +L +G + R QI+ W+++ + +F M+++S ++R Sbjct: 1 MEKTDILSLSKEELEEKILAMG----EKKFRAGQIYDWLHINKVEEFSKMTNLSAQLREK 56 Query: 64 LNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L+ F I +I +S D T K+L + ++ETV + K ++C+S+QV Sbjct: 57 LDDIFWINSLKIQKRLVSDIDNTVKYLY-----GLSDGEKVETVLMEYKHGNSICISTQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC + VRNL E+LLQ+ + GRKI+++ Sbjct: 112 GCKMGCKFCASTKAGFVRNLEPSEMLLQIYESER-----------------DSGRKINHV 154 Query: 183 VMMGMGEPLCNFDNVKKSLSI--ASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVML 239 V+MG+GEPL N DNV K L + A D M L R +++ST G V I + + ++G+ L Sbjct: 155 VLMGIGEPLDNLDNVVKFLRLLSAKDDMSL----RHVSVSTCGLVNRIYELADLKLGITL 210 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 ++SLHA +N+LR+ ++PIN ++ +E L++AC++Y + RRI++E+ ++ G+ND+ + A Sbjct: 211 SVSLHAPTNELRSSIMPINDRFRIEELMEACKYYFN-TTGRRISYEFALIDGVNDNRQSA 269 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L+K+LKG +NLIP N E + + + + + G ++ +R G DI Sbjct: 270 DALLKLLKGQNCHVNLIPVNEIK--EGVFKRSASVEKYKQMLIDGGLNATVRRTLGADIS 327 Query: 360 AACGQLKSLSK 370 AACGQL+ +K Sbjct: 328 AACGQLRRDNK 338 >gi|56752343|ref|YP_173044.1| ribosomal RNA large subunit methyltransferase N [Synechococcus elongatus PCC 6301] gi|81561318|sp|Q5MZJ6|RLMN_SYNP6 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|56687302|dbj|BAD80524.1| hypothetical protein [Synechococcus elongatus PCC 6301] Length = 351 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 127/366 (34%), Positives = 196/366 (53%), Gaps = 37/366 (10%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+G EL++ ++ G P R Q+++W+Y R I + +S + R L Q Sbjct: 7 LLGRSLPELQDWVVAQGQPS----YRAKQLYQWLYERSIHNLAEISVFPKAWRQSL-QAV 61 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 + +IVD +S G+ K+LLR I IE V IP R T+CVSSQ+GC++ C Sbjct: 62 PVGRSQIVDRSVSPSGSIKYLLRLHDGEI-----IEAVGIPSGDRLTVCVSSQLGCAMAC 116 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG R+L EI+ QVL + ED + +++SNIV MGMG Sbjct: 117 DFCATGKGGFRRHLAPHEIIDQVLTVQ---------EDWQ--------QRVSNIVFMGMG 159 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-------IGVMLAI 241 EPL N D V ++ + +G+ +R IT+ST G +I R+ E + LA+ Sbjct: 160 EPLLNLDAVLAAIRCLNQDIGIG--QRGITVSTVGIPGHIRRLAETKRVGDRPLQFTLAV 217 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA + +R+ L+P +R YP+ L+ CR Y ++ RR+TFEY++L G+ND P A Sbjct: 218 SLHAPNQAIRDRLIPSSRHYPITDLLQECRDYVQIT-GRRVTFEYILLAGLNDQPEQAEQ 276 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++L+G + +NLIP NP EY + + F++ +++ + +R +GL AA Sbjct: 277 LAQLLRGFQSHVNLIPCNPIDEVEYQRPSKARVDAFADALRQQRVAVTVRWSKGLGADAA 336 Query: 362 CGQLKS 367 CGQL++ Sbjct: 337 CGQLRA 342 >gi|182415989|ref|YP_001821055.1| radical SAM protein [Opitutus terrae PB90-1] gi|205829654|sp|B2A0B9|RLMN3_OPITP RecName: Full=Ribosomal RNA large subunit methyltransferase N 3; AltName: Full=23S rRNA m2A2503 methyltransferase 3 gi|177843203|gb|ACB77455.1| radical SAM enzyme, Cfr family [Opitutus terrae PB90-1] Length = 374 Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 127/370 (34%), Positives = 199/370 (53%), Gaps = 36/370 (9%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ESL +RE E A R SQI W+Y + R + GM+++ + +R L+ Sbjct: 16 ESLTARLRERGEPAF------------RASQILDWVYKKRARSWDGMTNLPKPLRTWLDD 63 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK------SRGTLCVSS 120 F ++ +V K S D T K LL G +E + P++ SR T+C+S+ Sbjct: 64 TFDLMPATLVLNKQSADVTDKLLLELRD---GSLIETVIIRAPQEGVGQDHSRKTICIST 120 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC++ C FC +G L R+L+A EI+ Q+L C E + P +++ Sbjct: 121 QVGCAMGCVFCASGLAGLKRDLSAGEIVAQLLQV---------CYR-EDALTPRAHMELA 170 Query: 181 ---NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IG 236 NIV+MGMGEPL N+D + ++L+I + GL F RRIT+STSG VP I ++ +E +G Sbjct: 171 SFDNIVVMGMGEPLANYDALIRALTILNADWGLGFGARRITVSTSGLVPKILQLADEPLG 230 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 LAISLH ++++R ++P+N+ +PL L+ A + + + R IT E++++ G+NDS Sbjct: 231 FRLAISLHGATDEVREKIMPVNKAFPLAKLLPAVKAFSE-KHGRMITLEFILIDGVNDSL 289 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 A L I + A +NLIP+N G + F++ ++ S +R +G Sbjct: 290 EQAEKLRDIALDLHAHVNLIPYNTVEGLAWKRPSITRQERFADVLRARRVSVTLRREKGH 349 Query: 357 DILAACGQLK 366 DI AACGQL+ Sbjct: 350 DIDAACGQLR 359 >gi|298377278|ref|ZP_06987231.1| radical SAM enzyme, Cfr family [Bacteroides sp. 3_1_19] gi|298265692|gb|EFI07352.1| radical SAM enzyme, Cfr family [Bacteroides sp. 3_1_19] Length = 334 Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 132/358 (36%), Positives = 183/358 (51%), Gaps = 33/358 (9%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI- 70 M EEL+ ++ +P + Q+ WIY + I M++I+ R LL F I Sbjct: 1 MTLEELKGVASEVSLPAYAAK----QMADWIYKKKITRISEMTNIAVAKRALLEDSFEIG 56 Query: 71 IYPEIVDEKISCDGTRKWLLRFPARCIGGPVE-IETVYIPEKSRGTLCVSSQVGCSLTCS 129 +YP +K S DGT K+L GP +E+VYIP R TLCVSSQVGC + C Sbjct: 57 VYPPSEYQK-SKDGTIKYLYA------AGPGRFVESVYIPTDDRATLCVSSQVGCKMNCL 109 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 FC TG Q NLTA +IL Q+ +P ++NIV MGMGE Sbjct: 110 FCMTGKQGFTANLTANQILNQI------------------QSLPE-NDSLTNIVFMGMGE 150 Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSND 249 PL N D + K L I + G ++S +RIT+ST G + R EE LA+SLH+ Sbjct: 151 PLDNVDELFKVLEILTAPYGYAWSPKRITVSTIGVTKGLKRFLEESECHLAVSLHSPYPM 210 Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309 R L+P+ + +P +ID + Y S+ RR++FEY++ K +NDS + A L +L GI Sbjct: 211 ERLSLMPVEKAFPAREVIDLIKQY-DFSHQRRVSFEYIVFKNLNDSLKHAEALSCLLGGI 269 Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 P ++NLI F+ P SD + F + + G IR RG DI AACG L + Sbjct: 270 PCRVNLIRFHAIPNVSLETSDIAKMEAFRDFLNAKGVVCTIRASRGEDIFAACGMLST 327 >gi|154505950|ref|ZP_02042688.1| hypothetical protein RUMGNA_03492 [Ruminococcus gnavus ATCC 29149] gi|153793968|gb|EDN76388.1| hypothetical protein RUMGNA_03492 [Ruminococcus gnavus ATCC 29149] Length = 346 Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 118/363 (32%), Positives = 198/363 (54%), Gaps = 29/363 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ + E+L + +IG + R QI++W++V+ F+ M+++S+ +R L Sbjct: 2 KKDIRAYTYEQLAAEMEQIG----EKKFRAKQIYEWLHVKLADSFEEMTNLSKALREKLE 57 Query: 66 QHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I+ ++++ +IS D T K+L + G V +E+V + K ++C+SSQVGC Sbjct: 58 AEYEILPVKMLERQISKIDATNKFLFQLS----DGNV-VESVLMRYKHGNSVCISSQVGC 112 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC + L RNL+ E+L Q+ + + G+ ++SN+V+ Sbjct: 113 RMGCRFCASTIGGLERNLSPSEMLGQIYQIQKITGE-----------------RVSNVVV 155 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISL 243 MG GEP+ N++N + + +D GL S+R +T+ST G VP I + E + + LA+SL Sbjct: 156 MGTGEPMDNYENFLTFVRMLTDEHGLHISQRNLTVSTCGIVPKIRELAMEHLQITLALSL 215 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H + + R L+P+ KY L+ ++ AC Y RR+TFEY ++ G+ND+ DA LI Sbjct: 216 HGSTQEKRKQLMPVANKYDLQEVLKACDFYFQ-ETGRRVTFEYSLVHGVNDTQEDAEELI 274 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ILK +NLIP NP ++ +K+ + F +++SG + IR G DI ACG Sbjct: 275 GILKSRNCHLNLIPVNPIKERDFQQPSRKNALNFKNKLEKSGINVTIRREMGADIDGACG 334 Query: 364 QLK 366 QL+ Sbjct: 335 QLR 337 >gi|312879541|ref|ZP_07739341.1| 23S rRNA m(2)A-2503 methyltransferase [Aminomonas paucivorans DSM 12260] gi|310782832|gb|EFQ23230.1| 23S rRNA m(2)A-2503 methyltransferase [Aminomonas paucivorans DSM 12260] Length = 635 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 131/350 (37%), Positives = 186/350 (53%), Gaps = 30/350 (8%) Query: 19 EALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE 78 E L ++G P R R QI KWIY + + F+ M+D+S E+R L +S PE+ E Sbjct: 15 ERLAELGQP----RFRADQICKWIYRKRVFRFEDMTDLSLELREKLQALWSCGIPEVAAE 70 Query: 79 KIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137 ++S DGTRK L R +G +E+V + ++ R T C+S+QVGC L C+FC TG Sbjct: 71 QVSRKDGTRKLLWR-----LGDGQSVESVLLDQEGRRTACISTQVGCPLGCAFCATGQSG 125 Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197 VRNL+ EI+ Q L + G+ + +V MGMGEPL N D V Sbjct: 126 FVRNLSPGEIVGQFLGMEARYGE------------------LQGLVTMGMGEPLLNADAV 167 Query: 198 KKSLSIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVP 256 +L R ITLST G VP I A +GV LA+SLHA ++ LR+ LVP Sbjct: 168 FLALGALKHPKMRGLGVRHITLSTCGVVPGIRALAASGLGVRLAVSLHAANDALRDRLVP 227 Query: 257 INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLI 316 +N +YPL L +A Y ++ RI+ EY + +G+ND P A L + L+G+ +NLI Sbjct: 228 LNAQYPLAELREALVDYQEVTRD-RISIEYALFEGVNDDPSQARQLGEYLRGLSVFVNLI 286 Query: 317 PFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 P N Y + + F +++ G+ + +R RG DI AACGQL+ Sbjct: 287 PGNRSLEDAYRRPPRYRVEQFQGILEQQGFETAVRVERGSDIDAACGQLR 336 >gi|88807336|ref|ZP_01122848.1| hypothetical protein WH7805_12333 [Synechococcus sp. WH 7805] gi|88788550|gb|EAR19705.1| hypothetical protein WH7805_12333 [Synechococcus sp. WH 7805] Length = 351 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 130/370 (35%), Positives = 192/370 (51%), Gaps = 37/370 (10%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR-HL 63 + ++L+G+ ELE + + Q R Q+ W+Y +G RD Q ++ + + R L Sbjct: 6 QSKTLLGLGSSELE----RWAVTQGQSAFRGRQLHDWLYAKGARDLQEITVLPKSWRASL 61 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + SI + D K++ D T K LL +ETV IP R T+CVSSQVG Sbjct: 62 QDSGVSIGRLKEQDRKVAADATTKLLL-----ATDDGETLETVGIPTDQRLTVCVSSQVG 116 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG L R+L EI+ QVL R ++ R+ S++V Sbjct: 117 CPMACRFCATGKGGLQRSLYTHEIVAQVLSVREVM-----------------QRRPSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF---VPNIARVG-EEIG--- 236 MGMGEPL N + V S+ +D +G+ +RRIT+ST G +P +A + E +G Sbjct: 160 FMGMGEPLLNIEAVLDSIRCLNDDLGI--GQRRITVSTVGVPRTLPKLAELAMERLGRAQ 217 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 LA+SLHA + LR L+P YP + L+D CRHY ++ RR++FEY++L G+ND Sbjct: 218 FTLAVSLHAPNQTLREELIPTAHAYPYDALLDDCRHYLAIT-GRRVSFEYILLGGLNDHA 276 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 A L + G + +NLI +NP E+ + I F ++ G + +R RGL Sbjct: 277 AHAEELADRVGGFQSHVNLIAYNPIEEEEFQRPTRDRIEGFRRVLEGRGVAVSLRASRGL 336 Query: 357 DILAACGQLK 366 D AACGQL+ Sbjct: 337 DQDAACGQLR 346 >gi|154685991|ref|YP_001421152.1| YloN [Bacillus amyloliquefaciens FZB42] gi|205829638|sp|A7Z4J5|RLMN_BACA2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|154351842|gb|ABS73921.1| YloN [Bacillus amyloliquefaciens FZB42] Length = 363 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 113/340 (33%), Positives = 189/340 (55%), Gaps = 21/340 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R +QI++W+Y + + F M+++S+ +R L +F + + ++ S DGT K+L Sbjct: 40 FRAAQIFEWLYEKRVSSFDEMTNLSKSLREKLESNFVLTTLKTAVKQTSQDGTMKFLFE- 98 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + IETV + + ++CV++QVGC + C+FC + L RNL A EI+ QV+ Sbjct: 99 ----LHDGYTIETVLMRHEYGNSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVAQVV 154 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 + L + ++S++V+MG+GEP NF+ + L I + GL+ Sbjct: 155 KVQKALDE--------------TDERVSSVVIMGIGEPFDNFNEMLAFLKIINHDKGLNI 200 Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 R IT+STSG +P I ++ + + AISLHA + ++R+ L+PIN+ Y L L++A + Sbjct: 201 GARHITVSTSGIIPKIYDFADQKMQINFAISLHAPNTEIRSRLMPINKAYKLPDLMEAVK 260 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 +Y RRI+FEY + G+ND A L ++LK + +NLIP N P +Y+ + + Sbjct: 261 YYIE-KTGRRISFEYGLFGGVNDQVEHAEELAELLKDVKCHVNLIPVNYVPERDYVRTPR 319 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 I F + +K G + IR +G DI AACGQL++ ++ Sbjct: 320 DQIFAFEKTLKSRGVNVTIRREQGHDIDAACGQLRAKERQ 359 >gi|86608506|ref|YP_477268.1| ribosomal RNA large subunit methyltransferase N [Synechococcus sp. JA-2-3B'a(2-13)] gi|123751708|sp|Q2JMN2|RLMN_SYNJB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|86557048|gb|ABD02005.1| radical SAM enzyme, Cfr family [Synechococcus sp. JA-2-3B'a(2-13)] Length = 352 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 131/353 (37%), Positives = 184/353 (52%), Gaps = 32/353 (9%) Query: 20 ALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEK 79 AL + Q R Q+ WIY +GIR + ++ + R + Q + + IV Sbjct: 15 ALKDWAVAQGQPAYRGQQLHAWIYQKGIRSLEQVTVFPRAWREAV-QSYPVGRSRIVQRT 73 Query: 80 ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV 139 + DGT K+LL + IETV IP R T+CVSSQVGC + C FC TG Sbjct: 74 EARDGTVKFLLGLADGQL-----IETVGIPTAKRLTVCVSSQVGCPMACDFCATGKMGYR 128 Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199 RNL EIL QVL + DF GR++S++V MGMGEPL N D V + Sbjct: 129 RNLELHEILDQVLTVQE---DF--------------GRRVSHVVFMGMGEPLLNRDTVVQ 171 Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPIN 258 ++ + +G+ +R ITLST G IA + ++ + V LA+SLHA + DLR L+P Sbjct: 172 AIRSLNQDIGI--GQRHITLSTVGVPRQIAWLAQQDLQVTLAVSLHAPNQDLRQRLIPSA 229 Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK-----GIPAKI 313 YPL+ LI CR Y L RR++FEY +L G+ND P A L ++L+ G+ + Sbjct: 230 SHYPLDTLIQDCRDYM-LRTGRRVSFEYTLLSGVNDLPIHARQLAQLLQQASRSGVQLHV 288 Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 NLIP+NP +Y + F +++ + +R RGLD AACGQL+ Sbjct: 289 NLIPYNPISEADYQRPHPTRVREFVRQLEQHQVRATVRQTRGLDGNAACGQLR 341 >gi|167747880|ref|ZP_02420007.1| hypothetical protein ANACAC_02609 [Anaerostipes caccae DSM 14662] gi|167652702|gb|EDR96831.1| hypothetical protein ANACAC_02609 [Anaerostipes caccae DSM 14662] Length = 354 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 115/352 (32%), Positives = 196/352 (55%), Gaps = 27/352 (7%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKIS-CDGTRKWLL 90 + R QI++W + R M+++ + ++ L + + + V+ +S DGTRK+L Sbjct: 23 KFRAKQIFEWFHKRLASSLDEMNNLPKNLKEKLQEKYEAAELKEVETYVSRIDGTRKYLF 82 Query: 91 RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150 + + IE+V + K ++C+SSQ GC + C FC + L RNL E+L Q Sbjct: 83 Q-----LNDGNTIESVLMKYKHGNSVCISSQAGCRMGCRFCASTLGGLDRNLLPSEMLGQ 137 Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210 + + G ++SN+V+MG GEPL N++N+ + + + +D GL Sbjct: 138 IYY-----------------IQKDTGERVSNVVVMGTGEPLDNYENLLRFIRLLTDEKGL 180 Query: 211 SFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 + S+R +T+ST G VP I + +E + + LAISLHA ++++R L+P+ +Y +E L+ A Sbjct: 181 NLSQRNLTVSTCGLVPKIRELADEKLQMTLAISLHASNDEMRKSLMPVANQYSMEDLLAA 240 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 C++Y + RRITFEY ++ +NDSP++A L + L G P +NLIP NP ++ S Sbjct: 241 CKYYFDRT-GRRITFEYSLVAEVNDSPQNAKELCRFLGGFPCHVNLIPVNPIKERDFRQS 299 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQ 381 + + F ++++ + IR G DI AACGQL+ K++ V +QE++ Sbjct: 300 MPEFVNDFKNILEKNRVNVTIRREMGRDINAACGQLR--RKKLNSVEKQEIR 349 >gi|294056045|ref|YP_003549703.1| radical SAM enzyme, Cfr family [Coraliomargarita akajimensis DSM 45221] gi|293615378|gb|ADE55533.1| radical SAM enzyme, Cfr family [Coraliomargarita akajimensis DSM 45221] Length = 351 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 114/297 (38%), Positives = 168/297 (56%), Gaps = 23/297 (7%) Query: 74 EIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132 E E S DG T K+LL+ + E+E+V + R T C+SSQVGC++ C FC Sbjct: 69 EQTAETPSADGYTHKYLLK-----LADGAEVESVRMGFPGRFTACLSSQVGCAMGCVFCA 123 Query: 133 TGTQKLVRNLTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191 TG R L+A EI+ Q L + R L DF G ++ NIVMMGMGEPL Sbjct: 124 TGQMGFSRQLSAGEIVAQALHVERRLREDF--------------GERLRNIVMMGMGEPL 169 Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDL 250 NF+ + +L I +D+ GL+ R+ +ST G+VP I ++ + LA+SLH S++ Sbjct: 170 HNFEPLMDALDILTDTRGLNIGPARVAISTVGYVPGIRKLMQHAKRYSLAVSLHGASDEE 229 Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310 R L+PIN+++PL L++ CR Y + AR + F + ++KG+NDS A L +L+G+ Sbjct: 230 RGKLIPINKRWPLAELLETCREYSQVKKAR-VFFAWTLIKGVNDSDDHAQRLAALLQGMD 288 Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 A +NLIP NP ++ + F E I+ +G S +R RG+D+ A CGQLK+ Sbjct: 289 AHVNLIPLNPTDDFSGEAPEEARVRAFQEIIQAAGLPSTVRQRRGIDVAAGCGQLKA 345 >gi|169349817|ref|ZP_02866755.1| hypothetical protein CLOSPI_00555 [Clostridium spiroforme DSM 1552] gi|169293385|gb|EDS75518.1| hypothetical protein CLOSPI_00555 [Clostridium spiroforme DSM 1552] Length = 342 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 119/336 (35%), Positives = 184/336 (54%), Gaps = 24/336 (7%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q++ W+Y + R F MSD+S+E+R+ L F+ +I ++++S DGT K+L Sbjct: 24 FRAKQVFSWLYQKDARSFDDMSDLSKELRNSLKDEFNFDILKIKEKQVSRDGTIKYLFEL 83 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + G + IE+V + +LCV+SQVGC++ C FC +G R+L+ EI+ Q++ Sbjct: 84 ----LDGSL-IESVLMIHDYGKSLCVTSQVGCNMKCKFCASGLLNKQRDLSPGEIVSQII 138 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 + ++IS++V+MG GEP N+DNV + I + GL+ Sbjct: 139 -----------------KIQQDTNQRISHVVVMGTGEPFDNYDNVMDFVRIINHPNGLAI 181 Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 R IT+ST G + I R +E I LAISLHA ++++RN L+PIN+ YP++ L Sbjct: 182 GARHITISTCGLIKGIERYSDEGIQTNLAISLHAPNDEIRNELMPINKIYPMDKLRQVVS 241 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 Y +N RR+TFEY++LK IND A L L+G+ A +NLIP+N Y S + Sbjct: 242 DYIDKTN-RRVTFEYILLKDINDDIIYARQLAHYLRGLNAYVNLIPYNSVDEHGYQPSKK 300 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 + F + R + +R G DI ACGQL++ Sbjct: 301 EQAELFKSELLRLHINVTMRKEHGRDIDGACGQLRA 336 >gi|257451432|ref|ZP_05616731.1| florfenicol resistance protein [Fusobacterium sp. 3_1_5R] gi|257466897|ref|ZP_05631208.1| florfenicol resistance protein [Fusobacterium gonidiaformans ATCC 25563] gi|315918044|ref|ZP_07914284.1| radical SAM domain-containing protein [Fusobacterium gonidiaformans ATCC 25563] gi|317058012|ref|ZP_07922497.1| radical SAM domain-containing protein [Fusobacterium sp. 3_1_5R] gi|313683688|gb|EFS20523.1| radical SAM domain-containing protein [Fusobacterium sp. 3_1_5R] gi|313691919|gb|EFS28754.1| radical SAM domain-containing protein [Fusobacterium gonidiaformans ATCC 25563] Length = 349 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 132/372 (35%), Positives = 199/372 (53%), Gaps = 28/372 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K +L+ + ++EL E L+ G+ + + + +++ W++ + R+ Q M+++S + R + Sbjct: 1 MEKLNLLDLSKKELTEFLVAEGMKKFYGK----EVFVWLHKKFARNIQEMTNLSLQNREI 56 Query: 64 LNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQ 121 L + I Y ++ ++S D T K+L + G IETV + + R TLC+SSQ Sbjct: 57 LEEKTYIPYLNLLKHQVSKIDKTEKFLFQLED---GNT--IETVLLRHRDQRNTLCISSQ 111 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC + CSFC TG VRNL EIL QV L G K++N Sbjct: 112 VGCPVKCSFCATGQDGFVRNLRVSEILNQVYTVERRLN--------------KRGEKLTN 157 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLA 240 +V MGMGEPL N + + K+L I S G+ SKRRIT+STSG VP I R+ E++ V LA Sbjct: 158 LVFMGMGEPLINIEALLKALEILSSEEGICISKRRITISTSGIVPAIERILMEKVPVELA 217 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLH+ N+ R+ ++PIN+ YPLE L Y RR+TFEY+++K N S DA Sbjct: 218 VSLHSAINEKRDQIIPINKAYPLEDLAAVLGEYQR-QTKRRLTFEYILIKDFNVSEGDAN 276 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLDIL 359 L +NLIP NP +K I F + +K + +R +G DI Sbjct: 277 ALADFAHQFDHVVNLIPCNPVADTGLERPSEKKIERFYDYLKNVRKVNVSLRQEKGTDID 336 Query: 360 AACGQLKSLSKR 371 ACGQL+ ++ Sbjct: 337 GACGQLRQNQRK 348 >gi|269797912|ref|YP_003311812.1| radical SAM enzyme, Cfr family [Veillonella parvula DSM 2008] gi|269094541|gb|ACZ24532.1| radical SAM enzyme, Cfr family [Veillonella parvula DSM 2008] Length = 348 Score = 202 bits (515), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 125/366 (34%), Positives = 200/366 (54%), Gaps = 30/366 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+G EEL+ I + R Q++ +IY R I DF+ M+ +++R LN + Sbjct: 4 LLGKSLEELQSIFKTHNIQ----KFRAKQLFDYIYHRYIFDFEDMTQFPKDLRQWLNDNC 59 Query: 69 SIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 I P ++ E I+ DG TRK L+ + +E V + + ++CVSSQVGC++ Sbjct: 60 VISLPTLITESIAPDGKTRKILVEMTDQS-----RVEAVLMEQHYGYSVCVSSQVGCAMG 114 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC + L R+LT EI+ QV++ +L + +I ++V+MG Sbjct: 115 CVFCASTQGGLYRDLTVAEIIGQVVIFGALTKE-----------------EIHSVVVMGA 157 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 GEPL N+DNV ++L + D M + S R++T+ST G+VPNI ++ +E + + LA+SLHA Sbjct: 158 GEPLQNYDNVLQALQLLHDPMICNISYRKMTISTCGWVPNIYKLADEALPITLALSLHAT 217 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 +N++R ++P+ +Y L ++DA ++Y + RR+TFEY+++ +N S +A L KI Sbjct: 218 NNEVRRSIMPVGARYELTEVLDAVKYYYN-TTQRRVTFEYILIDSVNASMDEAHALGKIC 276 Query: 307 KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 K P +NLIP N E ++ TF + + G S +R G I AACGQL Sbjct: 277 KDFPNCHVNLIPVNGNEHIELYKPSITNMNTFKDIVSSYGVSVTVRKEMGDAIQAACGQL 336 Query: 366 KSLSKR 371 K+ R Sbjct: 337 KAAHGR 342 >gi|282900428|ref|ZP_06308378.1| conserved hypothetical protein [Cylindrospermopsis raciborskii CS-505] gi|281194741|gb|EFA69688.1| conserved hypothetical protein [Cylindrospermopsis raciborskii CS-505] Length = 360 Score = 202 bits (515), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 121/334 (36%), Positives = 179/334 (53%), Gaps = 27/334 (8%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93 R Q+ WIY G+ +S + R + SI I + + DGT K+LL+ Sbjct: 41 RGKQLHNWIYHHGVHKISDISVFPKTWREQVAD-VSIGRSSIDHQSFATDGTEKYLLQLA 99 Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153 I IETV IP R T+CVS+QVGC + C FC TG RNL EI+ QVL Sbjct: 100 DGEI-----IETVGIPSDKRLTVCVSTQVGCPMACDFCATGKGGFKRNLNRGEIVDQVL- 153 Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213 V + +++S++V MGMGEPL N +NV +L + +G+ Sbjct: 154 ----------------TVQENFQQRVSHVVFMGMGEPLLNTENVILALKCLNQDLGIG-- 195 Query: 214 KRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 +R +T+ST G I ++ E + V LA+SLHA + LR ++P + YP+E L+ CR Sbjct: 196 QRSLTVSTVGIRDRIRQLAEHHLQVTLAVSLHAPNQKLREQIIPSAKTYPIEQLLAECRE 255 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y ++ RR+TFEY++L G+ND P AL L + L+G + +NLIP+NP +Y ++ Sbjct: 256 YVEIT-GRRVTFEYILLAGVNDLPEQALELSQRLRGFQSHVNLIPYNPIQEADYQRPNRD 314 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 I F +++ + IR RGL++ AACGQL+ Sbjct: 315 RIHAFVNILQQQKIAVSIRYSRGLEVDAACGQLR 348 >gi|197302405|ref|ZP_03167461.1| hypothetical protein RUMLAC_01133 [Ruminococcus lactaris ATCC 29176] gi|197298526|gb|EDY33070.1| hypothetical protein RUMLAC_01133 [Ruminococcus lactaris ATCC 29176] Length = 351 Score = 202 bits (515), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 112/336 (33%), Positives = 191/336 (56%), Gaps = 25/336 (7%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKIS-CDGTRKWLLR 91 R Q+++W++V+ DF M+++S+ +R L + + I+ ++++ +IS DGT K+L + Sbjct: 25 FRAKQVYEWLHVKLADDFDEMTNLSKALREKLKEEYVILPVKMLERQISQIDGTNKFLFQ 84 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 G V +E+V + K ++C+SSQ GC + C+FC + L RNL++ E+L Q+ Sbjct: 85 L----YDGNV-VESVLMRYKHGNSVCISSQAGCRMGCAFCASTIGGLQRNLSSSEMLGQI 139 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 + + + ++SN+V+MG GEPL N++N + + +D GL+ Sbjct: 140 YQIQKITQE-----------------RVSNVVVMGTGEPLDNYENFLNFVHLLTDEHGLN 182 Query: 212 FSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 S+R +T+ST G VP I + +E + + LA+SLH + + R L+P+ KY L ++DAC Sbjct: 183 ISQRNVTVSTCGIVPKILELAKEHLQITLALSLHGSTQEKRKRLMPVANKYHLPEVLDAC 242 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 Y RR+TFEY ++ G+ND+ DA L +LK +NLIP NP +++ Sbjct: 243 DTY-FRETGRRVTFEYSLVHGVNDTEEDARELTALLKPRNCHLNLIPVNPVRERDFVRPS 301 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +K+ + F +++SG + IR G DI ACGQL+ Sbjct: 302 RKNALNFKNKLEKSGINVTIRREMGSDIDGACGQLR 337 >gi|210634763|ref|ZP_03298291.1| hypothetical protein COLSTE_02218 [Collinsella stercoris DSM 13279] gi|210158703|gb|EEA89674.1| hypothetical protein COLSTE_02218 [Collinsella stercoris DSM 13279] Length = 348 Score = 202 bits (514), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 124/354 (35%), Positives = 192/354 (54%), Gaps = 30/354 (8%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 EEL++ + ++G P R Q+ +WI+ + + F M+++ +R L++ FS P Sbjct: 16 EELQDLVKELGQPA----FRAKQLNEWIHDKNVCSFDEMTNLPAALREKLSERFSFNVPV 71 Query: 75 IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134 + +++S DG+RK+LL+F V +ETV +P +++ +C+SSQ GC++ C+FC TG Sbjct: 72 ELVKQVSKDGSRKYLLQF-----SDGVSVETVGMPNRNKLAVCISSQAGCAMGCAFCATG 126 Query: 135 TQKLVRNLTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 L R+LTA+E++ QVL +AR DF G +++++V MG GEP N Sbjct: 127 LAGLSRSLTAQEMVDQVLHVAR----DF--------------GERVTSVVFMGQGEPFAN 168 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRN 252 FD ++L I +D GL+ R +T+ST G +P I R E LAISLH+ RN Sbjct: 169 FDATVQALRILNDPDGLAIGARHLTVSTCGVIPGIRRFAELPEQFTLAISLHSAIQGTRN 228 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312 L+P +KY L L +A + Y RR T+E+ M+ GIND+ + L+ G Sbjct: 229 QLMPGVKKYTLLRLHEAIQLYVE-KTGRRPTYEFAMIDGINDTSPEMQALVDFCAGTLCH 287 Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +NLI N P + S + + + + G + IR RG DI AACGQLK Sbjct: 288 VNLIQLNNIPDSPFRPSPIEKVESLQRRLTMHGVETTIRNSRGSDIDAACGQLK 341 >gi|307565075|ref|ZP_07627588.1| radical SAM enzyme, Cfr family [Prevotella amnii CRIS 21A-A] gi|307346244|gb|EFN91568.1| radical SAM enzyme, Cfr family [Prevotella amnii CRIS 21A-A] Length = 347 Score = 202 bits (514), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 125/368 (33%), Positives = 194/368 (52%), Gaps = 29/368 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K L+G EL++ +G+P QI +W+Y++ I+ M++IS+ R Sbjct: 6 IEKLPLLGKTLFELKQIAKDLGLPA----FAGKQIAEWLYIKHIKSIDEMTNISKANREK 61 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L++ ++I +D + S DGT K+L FP +ETVYIP+ R TLCVSSQVG Sbjct: 62 LSKVYTIGCKAPIDAQYSKDGTIKYL--FPTE---EDKFVETVYIPDNDRATLCVSSQVG 116 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG Q NL+ +IL Q+ P E K++NIV Sbjct: 117 CKMNCLFCQTGKQGFEGNLSVTDILNQIY-------SLPERE------------KLTNIV 157 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MG GEP+ N DNV ++ I + ++S +RIT+S+ G + R +E +AIS+ Sbjct: 158 FMGQGEPMNNIDNVLRTTEIMTAEYAYAWSPKRITVSSVGVKNKLKRFLDESQCQVAISM 217 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ + R L+P R ++ +I+ +Y S+ RR++FEY++ G NDS A +I Sbjct: 218 HSPLEEQRKELMPAERAMSIKEVINLLHNY-DFSHQRRLSFEYIVFGGKNDSLEHAKAII 276 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++KG+ ++NLI F+ P SD + F + + R G + IR RG DI AACG Sbjct: 277 NLVKGLECRVNLIRFHQIPNVPLKGSDISTMEHFRDYLTRHGVFTTIRASRGQDIFAACG 336 Query: 364 QLKSLSKR 371 L + K+ Sbjct: 337 LLSTAKKK 344 >gi|254415410|ref|ZP_05029171.1| radical SAM enzyme, Cfr family [Microcoleus chthonoplastes PCC 7420] gi|196177885|gb|EDX72888.1| radical SAM enzyme, Cfr family [Microcoleus chthonoplastes PCC 7420] Length = 359 Score = 202 bits (513), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 129/363 (35%), Positives = 188/363 (51%), Gaps = 31/363 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K L+G EL + + + G P R Q+ WIY +G R +S S+ R L Sbjct: 24 KTPLLGASLAELTQWVEQQGQPA----YRGRQLHNWIYQKGARRLSEISVFSKSWRQALV 79 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I + + D T K+LLR I IETV IP +R T+CVSSQVGC Sbjct: 80 D-VPIGRSTLHYRSQAPDRTVKYLLRLADGNI-----IETVGIPTANRLTVCVSSQVGCP 133 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG RNL EI+ QVL + DF G+++SN+V M Sbjct: 134 MACDFCATGKGGFTRNLQPHEIVDQVLTVQE---DF--------------GQRVSNVVFM 176 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244 GMGEPL N + V ++ + +G+ R T+ST G I ++ E ++ + A+SLH Sbjct: 177 GMGEPLLNLEGVLAAVRSLNQDIGIGM--RSQTISTVGIRDRIRQLAEHKLQLTFAVSLH 234 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A + LR L+P ++YPL L+ CR Y ++ RR+TFEY++L G+ND P + L + Sbjct: 235 ASNQQLREQLIPSAKRYPLTDLLQECRDYVKIT-GRRVTFEYILLAGLNDQPEHGIELAQ 293 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 L+G + +NLIP+NP +Y + I F E +K+ + +R RGL+ AACGQ Sbjct: 294 HLRGFQSHVNLIPYNPISEVDYQRPSPRRIQAFVETLKQHNIAVSVRRSRGLEKDAACGQ 353 Query: 365 LKS 367 L++ Sbjct: 354 LRA 356 >gi|317056479|ref|YP_004104946.1| radical SAM enzyme, Cfr family [Ruminococcus albus 7] gi|315448748|gb|ADU22312.1| radical SAM enzyme, Cfr family [Ruminococcus albus 7] Length = 348 Score = 202 bits (513), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 118/337 (35%), Positives = 185/337 (54%), Gaps = 26/337 (7%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE-KISCDGTRKWLL 90 + R QI++W++V+ + F M+++S ++R L + F + IV + + D T K+L Sbjct: 31 KFRAKQIFEWLHVKRVDSFDKMTNLSVQLREKLKKIFCLKSLFIVKRLESNTDNTVKYLY 90 Query: 91 RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150 R P +ETV + T+CVS+QVGC + C FC + R+L + EILLQ Sbjct: 91 RLP-----DGNHVETVIMEYNYGNTVCVSTQVGCKMGCRFCASTIAGYKRDLASSEILLQ 145 Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210 + A GRKI+ V+MG+GEP+ NFDNV L + S G Sbjct: 146 IYEA-----------------ARDSGRKITGAVLMGIGEPMDNFDNVVNFLKVLSCEQGT 188 Query: 211 SFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 + S R +++ST G VP I + E ++G+ L++SLHA +N R+ ++P+N +Y + L+ A Sbjct: 189 NMSLRHVSVSTCGIVPRIYELAEMKLGITLSVSLHASNNKARSEIMPVNNRYDIGELMTA 248 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 CR+Y ++ RRI+FEY ++ G ND DA L +LK +N+IP N Y S Sbjct: 249 CRYYFKVT-GRRISFEYALIDGHNDKQSDAEELAALLKNFVCHVNIIPVNKIKERNYR-S 306 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 D+K F + +++ G ++ +R G DI AACGQL+ Sbjct: 307 DRKAADRFRQRLEKLGLNATVRRTLGSDIDAACGQLR 343 >gi|225164328|ref|ZP_03726595.1| radical SAM enzyme, Cfr family [Opitutaceae bacterium TAV2] gi|224801062|gb|EEG19391.1| radical SAM enzyme, Cfr family [Opitutaceae bacterium TAV2] Length = 375 Score = 202 bits (513), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 128/374 (34%), Positives = 198/374 (52%), Gaps = 41/374 (10%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +SL +RE E+ R QI W+Y + R + M+++S+ +R L + Sbjct: 16 DSLTARLREHGEQTF------------RARQILDWVYKKRARSWDDMTNLSKALRAWLAE 63 Query: 67 HFSIIYPEIVDEKISCDG---TRKWLLRFPARCIGGPVEIETVYIP--------EKSRGT 115 F +I +V +K S D T K LL +G +ETV I E SR T Sbjct: 64 TFVLIPAALVLDKQSHDAHDATDKLLLE-----LGDASLVETVIIRAPQDGVGLEHSRKT 118 Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC--EDIEGMVIP 173 +C+S+QVGC++ C+FC +G L R+L A EI+ Q+L C ED Sbjct: 119 ICISTQVGCAMACAFCASGLAGLKRDLLAGEIVAQLLHV---------CYREDARTPRAR 169 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG- 232 S NIV+MGMGEPL N+D + ++L I + GL RRITLSTSG VP I ++ Sbjct: 170 SELASFDNIVVMGMGEPLANYDAIVRALRIVNAEWGLGVGARRITLSTSGLVPKILKLAD 229 Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 E++G+ LAISLH ++++R ++P+N+ +PL LI A + + N R +T E+++++ + Sbjct: 230 EDLGIRLAISLHGATDEVRERIMPVNKAFPLAKLIPAVKTFSE-KNGRMVTLEFILIEEV 288 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 ND+ A L I + + A +NLIP+N G + F++ ++ + S +R Sbjct: 289 NDTIEQAEALCYIARDLHAHVNLIPYNTVEGLLWKRPSLTRQERFADVLRAARVSVTLRR 348 Query: 353 PRGLDILAACGQLK 366 +G DI AACGQL+ Sbjct: 349 EKGHDIDAACGQLR 362 >gi|302671345|ref|YP_003831305.1| radical SAM domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302395818|gb|ADL34723.1| radical SAM domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 352 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 113/337 (33%), Positives = 186/337 (55%), Gaps = 27/337 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIY--PEIVDEKISCDGTRKWLL 90 R Q+++W++V+ RD+ M++I + ++ + F + E+V E D T+K+L Sbjct: 33 FRAKQLYEWMHVKLARDYDEMTNIPKSLKEKCREMFDFVSLKSELVQES-KLDDTKKFLF 91 Query: 91 RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150 + IE+V++ K ++C+SSQVGC + C FC + +VRNL E+L Q Sbjct: 92 -----ALSDGNMIESVFMKYKFGVSVCISSQVGCRMGCKFCASTIDGVVRNLLPSEMLDQ 146 Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210 + + G K+ +V+MG GEPL N+DN+ + + + ++ GL Sbjct: 147 IYAISRI-----------------TGEKVGRVVVMGSGEPLDNYDNLLRFIDLLTNEDGL 189 Query: 211 SFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 + S+R +T+ST G VPNI R+ ++ + + LA+SLHA +ND R L+PI KY + ++DA Sbjct: 190 NMSQRNLTVSTCGIVPNILRLADKNLAINLALSLHASNNDKRKELMPIANKYEIHEVLDA 249 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 CR Y R++TFEY ++ G+ND+ DA L +L G +NLIP NP ++ + Sbjct: 250 CRTYFD-KTGRQLTFEYSLVAGVNDTDEDARELTDLLSGFNCVVNLIPVNPIKERDFKPT 308 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 D+ + F +++S + IR G DI ACGQL+ Sbjct: 309 DRAGALGFKNKLEKSRINVTIRREMGRDIDGACGQLR 345 >gi|229816215|ref|ZP_04446525.1| hypothetical protein COLINT_03265 [Collinsella intestinalis DSM 13280] gi|229808223|gb|EEP44015.1| hypothetical protein COLINT_03265 [Collinsella intestinalis DSM 13280] Length = 348 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 117/353 (33%), Positives = 186/353 (52%), Gaps = 28/353 (7%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 ++L+E + ++G P R Q+++W++ + + F M+++ +R L + F+ P Sbjct: 16 DDLKELMKELGQPA----FRAKQLYEWVHEKNVCSFDEMTNLPAGLRQSLTETFAFKVPT 71 Query: 75 IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134 + +++S DG+RK+LL F V +ETV +P +++ +C+SSQ GC++ C+FC TG Sbjct: 72 ELVKQVSKDGSRKYLLEF-----SDGVSVETVGMPNRNKLAVCISSQAGCAMGCAFCATG 126 Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194 L R+LTA+E++ QVL V G +++++V MG GEP NF Sbjct: 127 LAGLSRSLTAQEMVDQVL-----------------HVSRDFGERVTSVVFMGQGEPFANF 169 Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNI 253 DN ++L + +D GL+ R +T+ST G +P I R E LAISLH+ RN Sbjct: 170 DNTVEALRMLNDPEGLAIGARHLTVSTCGVIPGIRRFAELPEQFTLAISLHSAIQTTRNQ 229 Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313 L+P +K+ L L +A + Y RR T+E+ M+ GIND+ + L+ G + Sbjct: 230 LMPGVKKFTLLRLHEAIQEYVE-KTGRRPTYEFAMIDGINDTSPEMQALVDFCAGTLCHV 288 Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 NLI N P + S + + G + IR RG DI AACGQLK Sbjct: 289 NLIQLNDIPDSPFRPSPIDKVEALQRRLTMHGVETTIRNSRGGDIDAACGQLK 341 >gi|238916657|ref|YP_002930174.1| hypothetical protein EUBELI_00719 [Eubacterium eligens ATCC 27750] gi|259491988|sp|C4Z523|RLMN_EUBE2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|238872017|gb|ACR71727.1| Hypothetical protein EUBELI_00719 [Eubacterium eligens ATCC 27750] Length = 350 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 112/338 (33%), Positives = 193/338 (57%), Gaps = 25/338 (7%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKIS-CDGTRKWLL 90 + R Q+++W++ + F +++S +R L + + E V + S DGT K+L Sbjct: 23 KFRAGQLYQWMHEKLADSFDECTNLSNALRQKLKETSEYVCLEPVRVQHSKLDGTEKYLF 82 Query: 91 RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150 R + +E+V + ++C+SSQVGC + C FC + VR+L E+L Q Sbjct: 83 R-----LSDGNYVESVLMKYHHGNSVCISSQVGCRMGCRFCASTLNGKVRDLRPSEMLDQ 137 Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210 + + + G+ ++SN+V+MG GEP+ N+DN+ K + + +D GL Sbjct: 138 IYRIQKITGE-----------------RVSNVVVMGSGEPMDNYDNLIKFIELLNDERGL 180 Query: 211 SFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 + S+R IT+S+ G VP + + + ++ + LAISLHA +++LR ++PI KY +E ++D Sbjct: 181 NISQRNITVSSCGIVPKLKELADLKLQITLAISLHAPNDELRKTMMPIANKYSIEEIMDV 240 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 CR+Y + RRI+FEY ++KG+NDS A LI+++KG+ INLIP NP +Y + Sbjct: 241 CRYYIECT-GRRISFEYSLVKGVNDSMECAKQLIELVKGMNCHINLIPVNPIKERDYKQT 299 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 ++++ F ++++G + IR G DI ACGQL++ Sbjct: 300 GKEEVYAFKNKLEKNGINVTIRREMGRDIDGACGQLRN 337 >gi|291287807|ref|YP_003504623.1| radical SAM enzyme, Cfr family [Denitrovibrio acetiphilus DSM 12809] gi|290884967|gb|ADD68667.1| radical SAM enzyme, Cfr family [Denitrovibrio acetiphilus DSM 12809] Length = 357 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 131/362 (36%), Positives = 188/362 (51%), Gaps = 27/362 (7%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L M + ELE ++ G+ + R QI KW+Y RG M+D+S R L Sbjct: 7 LDSMNKFELENFVISQGMQ----KFRAIQIHKWVYRRGAESVAEMTDLSIADREKLLGMA 62 Query: 69 SIIYPEIVD-EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 + D K + DG+ K+L IE V + + R T C+SSQVGC + Sbjct: 63 KFTVMNVADVRKSAMDGSVKFLFSLE-----DGETIEAVVLNDGRRLTACISSQVGCRMG 117 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C+FC T L RNLT EI+ QV L ++ + S G K++N+V MGM Sbjct: 118 CAFCSTAKMGLRRNLTMGEIIKQV----KRLNEY----------LASEGTKLNNLVFMGM 163 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAV 246 GEPL N DNVK ++++ D G FS ++ITLST G + + + V LA+S++A Sbjct: 164 GEPLDNLDNVKNAINVLLDDDGYGFSHKKITLSTCGLTDRLEELFAMDTPVNLAVSVNAA 223 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 + R L+P++ KYPL L+D + P L + IT EYV+L+G+ND+ DA L K+L Sbjct: 224 DQETRKGLMPVSNKYPLSGLMDVLKKLP-LQKRKSITIEYVLLRGVNDTLDDARKLAKLL 282 Query: 307 KGI-PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +G+ KINLI +N YL +KD + F E + + IR G DI ACGQL Sbjct: 283 RGLDKVKINLITYNSGGDAGYLPPSEKDTLKFQEYLISNKIGVFIRKSLGRDIEGACGQL 342 Query: 366 KS 367 ++ Sbjct: 343 RA 344 >gi|86607188|ref|YP_475951.1| ribosomal RNA large subunit methyltransferase N [Synechococcus sp. JA-3-3Ab] gi|123751756|sp|Q2JRQ8|RLMN_SYNJA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|86555730|gb|ABD00688.1| radical SAM enzyme, Cfr family [Synechococcus sp. JA-3-3Ab] Length = 356 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 131/355 (36%), Positives = 186/355 (52%), Gaps = 36/355 (10%) Query: 20 ALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEK 79 AL + Q R Q+ W+Y +GIR Q ++ + R L Q + + ++V Sbjct: 15 ALKDWAVEQGQPAYRGQQLHTWLYHKGIRSLQEVTVFPKAWREAL-QEYPVGRSQVVQRI 73 Query: 80 ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV 139 S DGT K+LL+ + IETV IP R T+CVSSQVGC + C+FC TG Sbjct: 74 ESRDGTVKFLLQLADGEL-----IETVGIPTARRLTVCVSSQVGCPMACNFCATGKMGYR 128 Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199 RNL EIL QVL + DF GR++S++V MGMGEPL N D V + Sbjct: 129 RNLKLHEILDQVLTVQE---DF--------------GRRVSHVVFMGMGEPLLNRDTVVQ 171 Query: 200 SLSIASDSMGLSFSKRRITLSTSGF---VPNIARVGEEIGVMLAISLHAVSNDLRNILVP 256 ++ + +G+ +R ITLST G +P +A+ +++ + LA+SLHA + +LR L+P Sbjct: 172 AIRSLNQDIGI--GQRHITLSTVGVPRQIPWLAQ--QDLQITLAVSLHAPNQELRQQLIP 227 Query: 257 INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK-----GIPA 311 YPL+ LI CR Y L + RRI+FEY +L G+ND P A L +L+ G Sbjct: 228 SAAHYPLDALIQDCRDY-MLCSGRRISFEYTLLAGVNDLPIHARQLAHLLRQASQAGARL 286 Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +NLIP+NP +Y + F ++ +R RGLD AACGQL+ Sbjct: 287 HVNLIPYNPIAEADYQRPHPTRVAEFVRLLEEHHVQVSVRQTRGLDSNAACGQLR 341 >gi|218132885|ref|ZP_03461689.1| hypothetical protein BACPEC_00746 [Bacteroides pectinophilus ATCC 43243] gi|217991758|gb|EEC57762.1| hypothetical protein BACPEC_00746 [Bacteroides pectinophilus ATCC 43243] Length = 360 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 114/357 (31%), Positives = 194/357 (54%), Gaps = 29/357 (8%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 M E+ E ++ +G + R QI++W++ + + + M+++ +R L + + Sbjct: 11 MTPSEVSELIVSLG----DKKFRAKQIYQWMHQKLVASYDEMTNVPAALRQKLAAEYPLT 66 Query: 72 YPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130 E V +IS DGTRK+L R + IE+V + ++C+SSQVGC + C F Sbjct: 67 VLEPVRVQISQIDGTRKYLFRLSDGNL-----IESVLMKYHHGNSVCISSQVGCRMGCRF 121 Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 C + LVR L E+L Q+ + +G ++ N+V+MG GEP Sbjct: 122 CASTIDGLVRGLLPSEMLEQIY-----------------RIQKDIGERVDNVVVMGSGEP 164 Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSND 249 NFDN+ + + + ++ GL+ S R +T+ST G VP I + + + + LAISLH+ +++ Sbjct: 165 FDNFDNLLRFIELLNNEEGLNISARNLTVSTCGIVPKIYELADMQPQITLAISLHSPNDE 224 Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309 LR ++P+ KY ++ ++ ACR+Y RRITFEY ++K +ND+ A+ L+ ++KGI Sbjct: 225 LRRSIMPVANKYSIDEIMKACRYYVE-KTGRRITFEYSLVKDVNDTDECAMQLVHLVKGI 283 Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +NLIP NP +Y + Q + F +++ G ++ +R G DI ACGQL+ Sbjct: 284 KCHVNLIPVNPIKERDYKQTAQAGVSHFRSRLEKCGVNATVRREMGRDIDGACGQLR 340 >gi|164687799|ref|ZP_02211827.1| hypothetical protein CLOBAR_01443 [Clostridium bartlettii DSM 16795] gi|164603074|gb|EDQ96539.1| hypothetical protein CLOBAR_01443 [Clostridium bartlettii DSM 16795] Length = 343 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 124/369 (33%), Positives = 202/369 (54%), Gaps = 32/369 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L EEL+E + +IG R +QI+ WIY +G + F M +I + +R L Sbjct: 4 QKIALKNFTEEELKEFMKEIG----EKPFRGTQIYSWIY-KGAKTFDDMKNIPKSLREKL 58 Query: 65 NQ--HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + + + E+V K D T+K+L I IE+V + R T C+S+QV Sbjct: 59 EKVSYIGNLETELV-LKSKVDKTKKYLFALNDGNI-----IESVMMDYDDRVTACISNQV 112 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC + + L+RNL EIL Q++ + G+++SN+ Sbjct: 113 GCRMGCKFCASTMEGLIRNLEPWEILDQII-----------------KIQEDTGKRVSNL 155 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241 V+MG GEPL NF+N K+ L I +D GL+ R ITLST G +P + + + I + LA+ Sbjct: 156 VLMGSGEPLDNFENTKQFLKIVNDKNGLNIGYRHITLSTCGVIPKMYELADLNIPINLAL 215 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH+ ++ R ++P+ + Y ++ LI AC++Y +N RR+TFEY ++KG+NDS ++ Sbjct: 216 SLHSPFDEKRAEIMPVAKAYKVKDLIKACQNYIDKTN-RRVTFEYSLIKGVNDSKAESDE 274 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 + ++LKG+ +NLIP N ++ D+ I F + ++++ + +R G DI A Sbjct: 275 ISRLLKGMLCHVNLIPINKVEERDFERPDKTYIYKFRDALEKNKIPTTVRNSMGSDIGGA 334 Query: 362 CGQLKSLSK 370 CGQL+ K Sbjct: 335 CGQLRRKHK 343 >gi|284039833|ref|YP_003389763.1| radical SAM enzyme, Cfr family [Spirosoma linguale DSM 74] gi|283819126|gb|ADB40964.1| radical SAM enzyme, Cfr family [Spirosoma linguale DSM 74] Length = 349 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 125/336 (37%), Positives = 183/336 (54%), Gaps = 19/336 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKI-SCDGTRKWLLR 91 R Q+ +W++ + F+ M+++S R LLN +F I P VD++ S DGT K + Sbjct: 25 FRAKQVHEWLWKKSALSFEQMTNLSLSTRELLNANFEI-RPLTVDQQQRSNDGTIKSSFK 83 Query: 92 -FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150 F + G V I + + R T CVSSQVGCSLTC FC TG RNL A EI Q Sbjct: 84 LFDGNLVEG-VLIPALRNDDLDRMTACVSSQVGCSLTCKFCATGYMDRKRNLDAAEIYDQ 142 Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210 V+ I+ + ++NIV MGMGEPL N+ NV +S+ + GL Sbjct: 143 VVA-------------IDRQAKENYDAPLTNIVYMGMGEPLLNYKNVLESVDRITSPDGL 189 Query: 211 SFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 S +RIT+ST+G I ++G++ + LA+SLHA ++ R+ ++PIN LE L DA Sbjct: 190 GMSPKRITVSTAGIAKMIRQLGDDDVKFNLALSLHAANDQKRDQIMPINESNTLEALGDA 249 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 ++ + R ITFEY++ ND+ +DA L K K +PAK+N+I +NP + + Sbjct: 250 LTYFYKKTGTR-ITFEYILFYNFNDTLQDAQELWKFTKRVPAKVNIIEYNPIAEANFKNT 308 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 D + + F+ ++ G +R RG DI AACGQL Sbjct: 309 DPQTLDKFAGFLESKGVIVNVRRSRGKDIDAACGQL 344 >gi|119357341|ref|YP_911985.1| radical SAM protein [Chlorobium phaeobacteroides DSM 266] gi|205829698|sp|A1BGN4|RLMN_CHLPD RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|119354690|gb|ABL65561.1| 23S rRNA m(2)A-2503 methyltransferase [Chlorobium phaeobacteroides DSM 266] Length = 363 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 135/367 (36%), Positives = 194/367 (52%), Gaps = 37/367 (10%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 + R+EL +A+ +G P RT QI +WI+ F+ M+ IS E+R+ L F I Sbjct: 11 LSRQELRQAIANLGEPA----YRTRQIHQWIFSHRAATFEEMTTISLELRNKLADQFRIG 66 Query: 72 YPEIVDEKISCDG-------TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +P + D DG T K LL + +IETV IP ++R T CVSSQVGC Sbjct: 67 FPILAD--CQQDGSANDPFSTVKLLLE-----LDDNEKIETVLIPSENRMTACVSSQVGC 119 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 L C FC +G RNL+A+EI+ QV L DF + +I+NIV Sbjct: 120 PLQCRFCASGQTGFKRNLSADEIIDQVF----SLNDF--------IRTKHESNEITNIVF 167 Query: 185 MGMGEPLCNFDNVKKSLSIASD-SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 MGMGEPL NF+N+K+S+ + SD S + +R+IT+ST G +P I +G+ + LAIS Sbjct: 168 MGMGEPLLNFENLKESIEVLSDQSYKFNLPQRKITISTVGIIPGINELGKSGLKTKLAIS 227 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LH+ S + R L+P+ ++ L L Y +T Y++LKGINDS DA L Sbjct: 228 LHSASQETRESLIPVASEFSLTQLRKTLSEYTS-QTGEPVTLVYMLLKGINDSVEDARLL 286 Query: 303 IKILKGIPAKINLIPFNPWPGCEY--LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 +K + KINLI +N ++ + ++ KD+ F + I +G +R G I A Sbjct: 287 VKFSRSFLCKINLIDYNSIINMKFKPVFNETKDM--FIQHILDAGIHVTVRKSHGASINA 344 Query: 361 ACGQLKS 367 ACGQL + Sbjct: 345 ACGQLAA 351 >gi|298490256|ref|YP_003720433.1| radical SAM enzyme, Cfr family ['Nostoc azollae' 0708] gi|298232174|gb|ADI63310.1| radical SAM enzyme, Cfr family ['Nostoc azollae' 0708] Length = 356 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 133/382 (34%), Positives = 200/382 (52%), Gaps = 51/382 (13%) Query: 2 NFLKKE---SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQ 58 NF K E L+G EL + + G P R Q+ WIY +G+R +S + Sbjct: 14 NFGKSELIGPLLGASVVELTAWVQEQGQPA----YRGKQLHDWIYDKGVRSLGDISVFPK 69 Query: 59 EVRHLLNQ--------HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE 110 R + H+ + P D T K+LL+ I IETV IP Sbjct: 70 SWREKVADVPIGRSSLHYRAVAP---------DDTVKYLLKLADGEI-----IETVGIPS 115 Query: 111 KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 R T+CVS+QVGC + C FC TG RNL+ EI+ QVL + ED + Sbjct: 116 HKRLTVCVSTQVGCPMACDFCATGKGGYKRNLSRGEIVDQVLTVQ---------EDFQ-- 164 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230 +++SN+V MG+GEPL N +NV +L ++ +G+ +R +T+ST G I + Sbjct: 165 ------QRVSNVVFMGLGEPLLNTENVILALKALNEDVGIG--QRSLTISTVGIRDRIHQ 216 Query: 231 VGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 + + + + LA+SLHA + LR L+P + YP+E L++ CR Y ++ RR+TFEY++L Sbjct: 217 LAQHHLQITLAVSLHAPNQALREQLIPSAKPYPIEDLLNECREYVEIT-GRRVTFEYILL 275 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349 G+ND P AL L K L+G + +NLIP+NP +Y ++ I F +++ + Sbjct: 276 AGVNDLPEQALELSKRLRGFQSHVNLIPYNPIEEVDYKRPNRDRIQAFVNVLQQQNITVS 335 Query: 350 IRTPRGLDILAACGQLKSLSKR 371 +R RGL+ AACGQL++ SKR Sbjct: 336 VRYSRGLEADAACGQLRT-SKR 356 >gi|257464159|ref|ZP_05628540.1| florfenicol resistance protein [Fusobacterium sp. D12] gi|317061675|ref|ZP_07926160.1| radical SAM domain-containing protein [Fusobacterium sp. D12] gi|313687351|gb|EFS24186.1| radical SAM domain-containing protein [Fusobacterium sp. D12] Length = 349 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 133/372 (35%), Positives = 196/372 (52%), Gaps = 28/372 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K +L+ + ++EL E L+ G+ + +++ W++ + R+ Q M+++S + R + Sbjct: 1 MEKRNLLDLNQQELTELLVAEGMK----KFYGKEVFLWLHKKFARNIQEMTNLSLKHREI 56 Query: 64 LNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQ 121 L + I Y ++ ++S D T K+L + G IETV + + R TLC+SSQ Sbjct: 57 LEEKTYIPYLNLLKHQVSKIDKTEKFLFQLED---GNT--IETVLLRHRDQRNTLCISSQ 111 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC + C+FC TG VRNL EIL QV L G K++N Sbjct: 112 VGCPVKCTFCATGQDGFVRNLRVSEILNQVYTIERRLN--------------KRGEKLTN 157 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLA 240 +V MGMGEPL N D + K+L I S G+ SKR+IT+STSG VP I R+ E+ V LA Sbjct: 158 LVFMGMGEPLINMDALMKALEILSCEEGICISKRKITISTSGIVPAIERILMEKTPVELA 217 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ISLH+ N+ R+ ++PIN+ YPLE L Y RR+TFEY+++K N S DA Sbjct: 218 ISLHSAINEKRDRIIPINKAYPLEDLSAVLLEYQR-QTKRRLTFEYILIKDFNVSEGDAN 276 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLDIL 359 L +NLIP NP +K I F E +K + +R +G DI Sbjct: 277 ALADFAHQFDHIVNLIPCNPVSETGLERPSEKKIERFYEYLKNVRKVNVSLRQEKGTDID 336 Query: 360 AACGQLKSLSKR 371 ACGQL+ ++ Sbjct: 337 GACGQLRQNQRK 348 >gi|225574500|ref|ZP_03783110.1| hypothetical protein RUMHYD_02577 [Blautia hydrogenotrophica DSM 10507] gi|225038287|gb|EEG48533.1| hypothetical protein RUMHYD_02577 [Blautia hydrogenotrophica DSM 10507] Length = 347 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 121/357 (33%), Positives = 197/357 (55%), Gaps = 29/357 (8%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 M EEL +AL +G R Q+++WI+ + + M+++S+ +R L + + + Sbjct: 7 MTLEELRQALTGLG----EKPFRAKQLYEWIHRKLAVSYDEMTNLSKHLREKLEKEYPLT 62 Query: 72 YPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130 E VD ++S DGT K+L R G V IE+V + ++C+SSQVGC + C F Sbjct: 63 VLEAVDVQVSKQDGTCKYLFRLE----DGNV-IESVLMRYHHGNSVCISSQVGCRMGCKF 117 Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 C + L RNL + E+L Q+ + L + ++SN+V+MG GEP Sbjct: 118 CASTIGGLTRNLRSSEMLDQIYRIQRLSQE-----------------RVSNVVVMGTGEP 160 Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSND 249 L N++N+ + + + + GL S+R +T+ST G VP I ++ +E + + LA+SLHA +++ Sbjct: 161 LDNYENLLRFIELLTGEDGLHISQRNLTVSTCGLVPKIRQLADEKLQITLALSLHAPNDE 220 Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309 R L+PI KY ++ ++DACR+Y RRITFEY +++G+ND DA L ++ I Sbjct: 221 KRKELMPIAYKYTMDEVLDACRYYFQ-KTGRRITFEYSLVRGVNDFEEDACQLAGQIQDI 279 Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +NLIP NP + S ++ + F +++ G + IR G DI ACGQL+ Sbjct: 280 NCHVNLIPVNPVKERSFRQSTRQAVENFKIKLEKCGINVTIRREMGSDIDGACGQLR 336 >gi|166363996|ref|YP_001656269.1| hypothetical protein MAE_12550 [Microcystis aeruginosa NIES-843] gi|205829811|sp|B0JT33|RLMN_MICAN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|166086369|dbj|BAG01077.1| hypothetical protein MAE_12550 [Microcystis aeruginosa NIES-843] Length = 337 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 189/361 (52%), Gaps = 31/361 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L+ EEL + + G P R Q+ +W+Y +G+ +S QE R + Sbjct: 2 TLLAKSLEELTDWVKDQGQPA----YRGKQLHQWLYEKGVHSLADISVFPQEWRSKMAD- 56 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 + I I ++ D TRK+LL+ I IE V IP + R T+CVSSQVGC + Sbjct: 57 YPIGRSLIHYRSVAPDRTRKYLLKLADGLI-----IEAVGIPSEKRLTVCVSSQVGCPMA 111 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC TG RNL A EI+ QVL + ED + +++S++V MGM Sbjct: 112 CDFCATGKGGFTRNLKAHEIVDQVLTVQ---------EDFQ--------QRVSHVVFMGM 154 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 GEPL N V ++ + +G+ +R +T+ST G I ++ E + + A+SLHA Sbjct: 155 GEPLLNIPEVVTAIHCLNKDVGIG--QRCLTISTVGLPHKIKQLAEHNLQITFAVSLHAS 212 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 + +R L+P Y L LI C+ Y ++ RR+TFEY++L G+ND P A L K++ Sbjct: 213 NQQVRAKLIPSADHYLLSNLIQDCQEYVQIT-GRRVTFEYILLAGVNDLPEHARELAKLV 271 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 KG + +NLIP+NP +Y D+K I F +++ + +R RGL AACGQL+ Sbjct: 272 KGFQSHVNLIPYNPIQEVDYQRPDEKRIKAFKTILEQEKVAVTVRYSRGLATDAACGQLR 331 Query: 367 S 367 S Sbjct: 332 S 332 >gi|146297083|ref|YP_001180854.1| radical SAM protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|205829688|sp|A4XL78|RLMN_CALS8 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|145410659|gb|ABP67663.1| 23S rRNA m(2)A-2503 methyltransferase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 344 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 122/336 (36%), Positives = 185/336 (55%), Gaps = 25/336 (7%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R +QI++W+Y + D ++I ++R + + F + +V K DG ++F Sbjct: 25 FRANQIFEWLYKKNATDVNSFTNIPTQLRKRIEEEFILNSLRVV--KYESDGES---IKF 79 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + G IE+V++P K +C+S+QVGC + C+FC + ++RNL+A E++ Q++ Sbjct: 80 LLELVDGNA-IESVFLPYKYGNAICISTQVGCRMKCAFCASTIGGMIRNLSAGEMVDQIV 138 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 +IE + +KISN+V+MG GEP N +NV K + I + G + Sbjct: 139 -------------NIENIT----KKKISNVVLMGSGEPFDNIENVFKFIDIINSKEGKNI 181 Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 R IT+ST G V I ++ E V LAISLHA +N+LRN LVP+NRKY +E ++ A Sbjct: 182 GARHITISTVGIVDGIYKLSEYPKQVNLAISLHAPNNNLRNKLVPMNRKYSIEDILKAVD 241 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 +Y +N RR+TFEY ++ G+NDS A L KIL G +NLIP NP G + + Sbjct: 242 YYISKTN-RRVTFEYALIDGVNDSIECANELAKILSGKLVHVNLIPVNPVNGRNFKKPPK 300 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 + + F + SG IR G I AACGQL+S Sbjct: 301 ERVKEFYNVLILSGIQVTIRRELGSSIAAACGQLRS 336 >gi|288922416|ref|ZP_06416604.1| radical SAM enzyme, Cfr family [Frankia sp. EUN1f] gi|288346219|gb|EFC80560.1| radical SAM enzyme, Cfr family [Frankia sp. EUN1f] Length = 380 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 130/368 (35%), Positives = 196/368 (53%), Gaps = 31/368 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIR--DFQGMSDISQEVRHLLNQ 66 L + R+E +G+P R Q+ + + R +R D M+D+ +VR L Sbjct: 25 LADLSRDERRAVAESLGLPA----FRADQLARHYFARHLRAEDAAAMTDLPAQVRATL-- 78 Query: 67 HFSIIYPEIVDEKIS--CDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + P ++ + CDG TRK + R + G +IE+V + R T+CVSSQ Sbjct: 79 -VDSLLPRLLTAATTADCDGGQTRKTVWR----TVDG-AKIESVLMRYPQRTTVCVSSQA 132 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RNL+ EI+ QV+ A + +P ++SN+ Sbjct: 133 GCGMACPFCATGQGGLTRNLSTAEIVEQVVDA---------ARTMTRGGLPGGPGRLSNV 183 Query: 183 VMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239 V MGMGEPL N++ + +L I GL S R +T+ST G VP I R+ GE + V L Sbjct: 184 VFMGMGEPLANYNALLAALRRLIEPTPDGLGLSARSLTVSTVGLVPGIRRLAGEGLPVTL 243 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA ++LRN LVPIN ++P+ +++A Y ++ RR++ EY ++ G+NDSP A Sbjct: 244 ALSLHAPDDELRNELVPINTRWPVAEVLEAAWDYARITG-RRVSIEYALIDGVNDSPERA 302 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L +L G A +NLIP NP G + S + F + ++ G ++ +R RG +I Sbjct: 303 DALGALLAGQLAHVNLIPLNPTDGSSWQASAPRGQRVFVDRLRARGVTATVRDTRGREIA 362 Query: 360 AACGQLKS 367 AACGQL + Sbjct: 363 AACGQLAA 370 >gi|300087157|ref|YP_003757679.1| Cfr family radical SAM protein [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299526890|gb|ADJ25358.1| radical SAM enzyme, Cfr family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 356 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 122/322 (37%), Positives = 178/322 (55%), Gaps = 18/322 (5%) Query: 54 SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTR-KWLLRFPARCIGGPVEIETVYIPEKS 112 S + + ++H L Q E+++E S DG K L +E K Sbjct: 48 SYLPESLKHKLRQISGHAALEVLEESKSVDGKNIKTLFGLDDGNTIESTAMEFGGSAGKI 107 Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172 R T+CVSSQVGC + C +C TG RNL+ E++ QVL R G Sbjct: 108 RRTVCVSSQVGCMIGCPYCATGMNGFHRNLSPGEMIEQVLYYRGETG------------- 154 Query: 173 PSVGRK-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231 VGR ++N+V MGMGEPL N+DNV ++S+ + G+ F R+IT+STSG VP I R+ Sbjct: 155 -RVGRNSLTNVVFMGMGEPLLNYDNVVTAVSLLNSHHGMGFGARQITISTSGIVPGILRL 213 Query: 232 G-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 E++ LA+S+ + +++LRN+LVP+NRKYPL LI+ACR Y L+ R++ EYV+ + Sbjct: 214 AREDLYCQLAVSIQSATDELRNLLVPVNRKYPLAHLIEACREYSELTR-RKVFIEYVLFE 272 Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI 350 G+NDS +DA L K+L+ + INLI N + + +V F + G+ + + Sbjct: 273 GVNDSIQDAEGLAKLLEPLDCSINLIIVNNSGIGTFRPTSYDTVVAFQRLLVSKGFRTML 332 Query: 351 RTPRGLDILAACGQLKSLSKRI 372 R RG DI A CGQL++ RI Sbjct: 333 RLSRGTDIEAGCGQLRNRRLRI 354 >gi|313893380|ref|ZP_07826952.1| 23S rRNA m2A2503 methyltransferase [Veillonella sp. oral taxon 158 str. F0412] gi|313442021|gb|EFR60441.1| 23S rRNA m2A2503 methyltransferase [Veillonella sp. oral taxon 158 str. F0412] Length = 348 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 126/366 (34%), Positives = 199/366 (54%), Gaps = 30/366 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+G EEL+ I + R Q+ +IY R + DFQ M+ +E+R L+ + Sbjct: 4 LLGKSLEELQSIFKTHNIQ----KFRAKQLIDYIYHRYVFDFQEMTQFPKELRQWLSDNC 59 Query: 69 SIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 I P ++ E IS DG TRK LL + +E V + + ++CVSSQVGC++ Sbjct: 60 VISLPTLITESISPDGKTRKILLEMTDQS-----RVEAVLMEQHYGYSVCVSSQVGCAMG 114 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC + L R+LT EI+ QV++ +L + +I ++V+MG Sbjct: 115 CVFCASTQGGLYRDLTVAEIIGQVVIFGALTKE-----------------QIHSVVVMGA 157 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 GEPL N+DNV ++L + D + + S R++T+ST G+VPNI ++ +E + + LA+SLHA Sbjct: 158 GEPLQNYDNVLQALQLLHDPVICNISYRKMTISTCGWVPNIYKLADEGLPITLALSLHAT 217 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 +N++R ++P+ +Y L ++DA ++Y + RRITFEY+++ +N S +A L +I Sbjct: 218 NNEVRRSIMPVGARYELTEVLDAVKYYYD-TTQRRITFEYILIDSVNASMEEAHALGQIC 276 Query: 307 KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 K P +NLIP N E ++ TF + + G S +R G I AACGQL Sbjct: 277 KDFPNCHVNLIPVNGNEHIELYKPSITNMNTFKDIVGSYGVSVTVRKEMGDAIQAACGQL 336 Query: 366 KSLSKR 371 K+ R Sbjct: 337 KAAHGR 342 >gi|294670879|ref|ZP_06735735.1| hypothetical protein NEIELOOT_02583 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307366|gb|EFE48609.1| hypothetical protein NEIELOOT_02583 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 219 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 101/227 (44%), Positives = 145/227 (63%), Gaps = 16/227 (7%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93 R Q+ +W++ G DF M+D+++ +R L + + P ++ + S DGTRKWLL Sbjct: 7 RAKQVMRWMHWGGAADFAEMTDLAKSLRAKLEECAIVGVPALMTAQESKDGTRKWLLD-- 64 Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153 +G +ETV+IPE RGTLC+SSQVGC+L C+FC TG Q RNLT EI+ Q+ Sbjct: 65 ---VGTGNGVETVFIPEADRGTLCISSQVGCALECTFCSTGRQGFNRNLTTAEIIGQLWW 121 Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213 A LG P E R ISN+VMMGMGEPL N+DNV ++L++ D G S S Sbjct: 122 ANKALGATPKNE-----------RMISNVVMMGMGEPLANYDNVVRALAVMLDDHGYSLS 170 Query: 214 KRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260 +RR+T+STSG VP + R+ E++ V LA+SLHA ++++R+ +VP+N+ Sbjct: 171 RRRVTVSTSGMVPQMDRLKEDMPVALAVSLHASNDEVRDQIVPLNKN 217 >gi|294674247|ref|YP_003574863.1| 23S rRNA m2A2503 methyltransferase [Prevotella ruminicola 23] gi|294472979|gb|ADE82368.1| 23S rRNA m2A2503 methyltransferase [Prevotella ruminicola 23] Length = 357 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 121/379 (31%), Positives = 200/379 (52%), Gaps = 40/379 (10%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 + +K+ L+GM EL++ + ++G+P + +QI KW+Y + + M+++S+ R Sbjct: 2 YDEKKVLLGMQPGELQQVVTELGMP----KFTAAQIAKWLYQQHVGSIADMTNLSKANRE 57 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK----------- 111 L + + + +D + S DGT K+L FP R G +ETVYIPE+ Sbjct: 58 KLAEQYEVGSMAPIDCQRSVDGTIKYL--FPTR--SGKF-VETVYIPERRRVGEQGSGIG 112 Query: 112 SRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMV 171 R TLCVS QVGC + C FC TG Q +LTA +IL Q+ Sbjct: 113 DRATLCVSCQVGCKMNCLFCQTGKQGFEGSLTAADILNQIY------------------A 154 Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231 +P ++NIV MG GEP+ N D + ++ + + G ++S RRIT+S+ G + R Sbjct: 155 LPERD-TLTNIVFMGQGEPMDNLDAILQATQVLTADWGYAWSPRRITVSSVGVKNKLKRF 213 Query: 232 GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291 +E +AIS+H+ + R +L+P ++ + +ID + Y S+ RR +FEY+ G Sbjct: 214 LDESECHVAISMHSPLPEQRQMLMPAEKQMSITEVIDLLKQYD-FSHQRRCSFEYICFAG 272 Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351 +ND+ A ++K+++G+ ++NLI F+ PG + +D+K + + + G + IR Sbjct: 273 LNDTTMHAREIVKLVRGLDCRVNLIRFHEIPGVDLPGADEKRMEALRDYLTAHGVFTTIR 332 Query: 352 TPRGLDILAACGQLKSLSK 370 RG DI AACG L + K Sbjct: 333 ASRGQDIFAACGLLSTAKK 351 >gi|169630257|ref|YP_001703906.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium abscessus ATCC 19977] gi|169242224|emb|CAM63252.1| Conserved hypothetical protein [Mycobacterium abscessus] Length = 373 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 130/369 (35%), Positives = 195/369 (52%), Gaps = 32/369 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L M E+ + + ++G+P R QI Y R + D M+D+ R + + Sbjct: 24 LADMSLEQSRDVVTELGLPA----FRAKQIANQYYGRLVGDPATMTDLPAGARGGVAE-- 77 Query: 69 SIIYPEIVD--EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 ++P +++ +I+CD TRK L R +E+V + R TLC+SSQ GC Sbjct: 78 -ALFPRLLEPLRQIACDAGDTRKTLWRLHDGST-----VESVLMRYPDRNTLCISSQAGC 131 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+A EIL QV A + L D +P ++SNIV Sbjct: 132 GMACPFCATGQGGLTRNLSAAEILEQVRDAAASLRDG---------QLPGGPGRLSNIVF 182 Query: 185 MGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 MGMGEPL N++ V L A G S+R +T+ST G P I R+ +E +GV LA+ Sbjct: 183 MGMGEPLANYNRVLTVLRKITAPPPEGFGISQRGVTVSTVGLAPAIRRLADEGLGVTLAV 242 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH ++LR+ LVP+N ++ + ++DA R+Y ++ RR++ EY +++ +ND P A Sbjct: 243 SLHCPDDELRDTLVPVNTRWAISEVLDAARYYADVTG-RRVSIEYALIRDVNDQPWRADM 301 Query: 302 LIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 L K L+ G +NLIP NP PG ++ S + F ++ G S +R RG +I Sbjct: 302 LGKKLRKALGQMVHVNLIPLNPTPGSQWDASPKPVEREFVRRVREQGVSCTVRDTRGREI 361 Query: 359 LAACGQLKS 367 AACGQL + Sbjct: 362 AAACGQLAA 370 >gi|238019374|ref|ZP_04599800.1| hypothetical protein VEIDISOL_01238 [Veillonella dispar ATCC 17748] gi|237864073|gb|EEP65363.1| hypothetical protein VEIDISOL_01238 [Veillonella dispar ATCC 17748] Length = 348 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 126/366 (34%), Positives = 200/366 (54%), Gaps = 30/366 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+G EEL+ I + R Q+ +IY R + DFQ M+ +E+R L+ + Sbjct: 4 LLGKSLEELQSIFKTHNIQ----KFRAKQLIDYIYHRYVFDFQDMTQFPKELRQWLSDNC 59 Query: 69 SIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 I P ++ E +S DG TRK L+ + +E V + + ++CVSSQVGC++ Sbjct: 60 IISLPTLITESVSPDGKTRKILVEMIDQS-----RVEAVLMEQHYGYSVCVSSQVGCAMG 114 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC + L R+LTA EI+ QV++ +L + +I ++V+MG Sbjct: 115 CVFCASTQGGLYRDLTAAEIIGQVVIFGALTKE-----------------QIHSVVVMGA 157 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 GEPL N+DNV ++L + D + + S R++T+ST G+VPNI ++ +E + + LA+SLHA Sbjct: 158 GEPLQNYDNVLQALQLLHDPVICNISYRKMTISTCGWVPNIYKLADEGLPITLALSLHAT 217 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 +N++R ++P+ +Y L ++DA ++Y + RRITFEY+++ IN S +A L +I Sbjct: 218 NNEVRRSIMPVGARYELTEVLDAVKYYYD-TTQRRITFEYILIDSINASMEEAHALGEIC 276 Query: 307 KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 K P +NLIP N E ++ TF + + G S +R G I AACGQL Sbjct: 277 KDFPNCHVNLIPVNGNEHIELYKPSITNMNTFKDIVASYGVSVTVRKEMGDAIQAACGQL 336 Query: 366 KSLSKR 371 K+ R Sbjct: 337 KAAHGR 342 >gi|282850141|ref|ZP_06259520.1| 23S rRNA m2A2503 methyltransferase [Veillonella parvula ATCC 17745] gi|294791793|ref|ZP_06756941.1| radical SAM enzyme, Cfr family [Veillonella sp. 6_1_27] gi|294793654|ref|ZP_06758791.1| radical SAM enzyme, Cfr family [Veillonella sp. 3_1_44] gi|282579634|gb|EFB85038.1| 23S rRNA m2A2503 methyltransferase [Veillonella parvula ATCC 17745] gi|294455224|gb|EFG23596.1| radical SAM enzyme, Cfr family [Veillonella sp. 3_1_44] gi|294457023|gb|EFG25385.1| radical SAM enzyme, Cfr family [Veillonella sp. 6_1_27] Length = 348 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 125/366 (34%), Positives = 198/366 (54%), Gaps = 30/366 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+G EEL+ I + R Q+ +IY R I DF+ M+ +++R L + Sbjct: 4 LLGKSLEELQSIFKTHNIQ----KFRAKQLIDYIYHRYIFDFEDMTQFPKDLRQWLGDNC 59 Query: 69 SIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 I P ++ E I+ DG TRK L+ + +E V + + ++CVSSQVGC++ Sbjct: 60 VISLPTLITESIAPDGKTRKILVEMSDQS-----RVEAVLMEQHYGYSVCVSSQVGCAMG 114 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC + L R+LT EI+ QV++ +L + +I ++V+MG Sbjct: 115 CVFCASTQGGLYRDLTVAEIIGQVVIFGALTKE-----------------EIHSVVVMGA 157 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 GEPL N+DNV ++L + D M + S R++T+ST G+VPNI ++ +E + + LA+SLHA Sbjct: 158 GEPLQNYDNVLQALQLLHDPMICNISYRKMTISTCGWVPNIYKLADEGLPITLALSLHAT 217 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 +N++R ++P+ +Y L ++DA ++Y + RR+TFEY+++ +N S DA L KI Sbjct: 218 NNEVRRSIMPVGARYELTEVLDAVKYYYN-TTQRRVTFEYILIDSVNASIDDAHALGKIC 276 Query: 307 KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 K P +NLIP N E ++ TF + + G S +R G I AACGQL Sbjct: 277 KDFPNCHVNLIPVNGNEHIELYKPSITNMNTFKDIVSSYGVSVTVRKEMGDAIQAACGQL 336 Query: 366 KSLSKR 371 K+ R Sbjct: 337 KAAHGR 342 >gi|302874751|ref|YP_003843384.1| radical SAM enzyme, Cfr family [Clostridium cellulovorans 743B] gi|307690634|ref|ZP_07633080.1| ribosomal RNA large subunit methyltransferase N [Clostridium cellulovorans 743B] gi|302577608|gb|ADL51620.1| radical SAM enzyme, Cfr family [Clostridium cellulovorans 743B] Length = 351 Score = 200 bits (508), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 121/336 (36%), Positives = 186/336 (55%), Gaps = 26/336 (7%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCD-GTRKWLLR 91 R Q++ WIY + + F M ++ + + L ++F I PEI + S + T K+LL+ Sbjct: 24 FRAKQVFDWIY-KAVASFDEMKNLPKNTKEKLKEYFFIGIPEITHKYDSINKDTAKYLLK 82 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 G V IE VY+ ++C+S+Q+GC + CSFC + +R+LT+ +IL ++ Sbjct: 83 LS----DGNV-IEAVYMKYNYGNSVCLSTQIGCRMGCSFCASTIGGRIRDLTSGDILGEI 137 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 L +F E ++SNIV+MG GEP N++NV K L + + GL+ Sbjct: 138 LAM-----EFNEKE------------RVSNIVLMGSGEPFDNYENVTKFLELVNSKDGLN 180 Query: 212 FSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 R ITLST G VP I R + + V LAISLHA +++LR ++PI KY ++ +++AC Sbjct: 181 IGARHITLSTCGLVPGIIRFADLKSQVTLAISLHAPNDELRKTMMPIANKYSIKEILEAC 240 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 +Y +N RRITFEY ++K +ND+ A L +LKGI +NLIP N + Sbjct: 241 NYYIEKTN-RRITFEYSLVKDVNDTEDHARELSALLKGILCHVNLIPVNVVKESGFSRPS 299 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 K ++ F + + +G + IR G DI AACGQL+ Sbjct: 300 DKAVMKFKKILDSNGIEATIRKEMGADINAACGQLR 335 >gi|168702822|ref|ZP_02735099.1| hypothetical protein GobsU_25056 [Gemmata obscuriglobus UQM 2246] Length = 355 Score = 200 bits (508), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 116/335 (34%), Positives = 179/335 (53%), Gaps = 15/335 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 MR +QI K I F+ MSD+ + +R L F + + + D T K++LR Sbjct: 18 MRVNQICKQILANRATAFEDMSDLPKGLRADLAGAFRVFSMSVERHFAASDDTHKFVLRL 77 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + IE V I + R T C+S+QVGC + C FC +G +VRNLTA E++ Q++ Sbjct: 78 ADGRM-----IEAVLIQDDGRATACISTQVGCGMGCVFCASGLNGVVRNLTAGEMVEQLV 132 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 L R+L P ++++IV+MGMGEPL N DN+ +L++A D GL Sbjct: 133 LLRNLTD--------ANSTNPERAPRLTHIVVMGMGEPLANLDNLLDALAVAGDKNGLGI 184 Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 R +T+ST G I ++ E LA+SLHA +++LR +VP N K ++ ++ A Sbjct: 185 GARHVTISTVGLPAKIRKLAESGKQYHLAVSLHAPNDELRTRIVPTNDKVGMDAILAAAD 244 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 + R++T+EYV+L G+ND A L +L+G A +NLIP+N G + Sbjct: 245 EFYE-KTGRQVTYEYVVLGGLNDQAPHARQLAGLLRGRQAHVNLIPWNAVEGLAFKRPAD 303 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 D+ + ++R G S +R +G +I AACGQL+ Sbjct: 304 ADLQYLIDTLRRGGISVKVRKRKGAEIDAACGQLR 338 >gi|168059243|ref|XP_001781613.1| predicted protein [Physcomitrella patens subsp. patens] gi|162666927|gb|EDQ53569.1| predicted protein [Physcomitrella patens subsp. patens] Length = 390 Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 131/375 (34%), Positives = 203/375 (54%), Gaps = 40/375 (10%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH- 67 LIG +EELE+ +L +G + R Q+++ IY I+ + ++ + +++R+ + + Sbjct: 35 LIGKTQEELEDIVLSLG----EQKYRGKQMYQLIYKNKIKTVKELAQLPKQLRNAMTEAG 90 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-----SRGTLCVSSQV 122 +SI I S DGT K LL+ + +E V IP K R T+CVSSQV Sbjct: 91 WSIGRSPIHHVSTSKDGTVKILLKLEDNRL-----VEAVGIPVKDKEGNQRLTVCVSSQV 145 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L C+FC TG RNL A EI+ QVL ED+ ++++NI Sbjct: 146 GCALRCAFCATGKGGFARNLKAHEIVDQVL----------SIEDL-------FRQRVTNI 188 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLA 240 V MGMGEPL N DNV + + L +R +T+ST G VPN R ++ LA Sbjct: 189 VFMGMGEPLMNLDNVLDAHRTINKE--LQIGQRMMTISTVG-VPNTIRRLATHKLQSTLA 245 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ISLHA + +LR+ +VP + YPL+ L++ C++Y + RR++FEY +L G+ND A Sbjct: 246 ISLHAPNQELRSRIVPSAKGYPLDALMEDCKYY-FETTGRRLSFEYTLLAGVNDQREHAE 304 Query: 301 NLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 L +L + +N+IP+NP E+ + ++ F E + + ++ +R RGLD Sbjct: 305 ELATLLHQWNLGRHVNIIPYNPIADSEFERPTKAKVLAFVETLSKRRVTASVRVTRGLDA 364 Query: 359 LAACGQLKSLSKRIP 373 AACGQL++ ++IP Sbjct: 365 NAACGQLRNEFQKIP 379 >gi|205829715|sp|Q8YZV0|RLMN_ANASP RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase Length = 355 Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 129/364 (35%), Positives = 188/364 (51%), Gaps = 31/364 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+G EL + + G P R Q+ WIY +G+R +S S++ R + Sbjct: 22 LLGASVTELTSWVQQQGQPA----YRGKQLHDWIYHKGVRSLTDISVFSKQWRAAVAD-V 76 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 I I ++ DGT K+LL+ I +E V IP R T+CVS+QVGC + C Sbjct: 77 PIGRSTIHHRSVASDGTVKYLLQLSDGEI-----VEAVGIPTDKRLTVCVSTQVGCPMAC 131 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG RNL EI+ QVL + ED + +++S++V MGMG Sbjct: 132 DFCATGKGGYKRNLERHEIVDQVLTVQ---------EDFQ--------QRVSHVVFMGMG 174 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVS 247 EPL N +NV L + +G+ +R +TLST G I+ + E + V LA+SLHA + Sbjct: 175 EPLLNTENVLAGLRSLNQDVGIG--QRSLTLSTVGIRDRISELAEHHLQVTLAVSLHAPN 232 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 LR L+P R Y +E L+ CR Y ++ RRI+FEY++L G+ND P AL L K L+ Sbjct: 233 QALREQLIPSARSYHIEDLLAECREYVAIT-GRRISFEYILLAGVNDLPEHALELSKHLR 291 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 G +NLIP+N +Y I F +++ + +R RGL+ AACGQL++ Sbjct: 292 GFQNHVNLIPYNSIDEVDYKRPSGDRIQAFLTVLQQQHIAVSVRYSRGLEADAACGQLRT 351 Query: 368 LSKR 371 + R Sbjct: 352 KASR 355 >gi|300866402|ref|ZP_07111100.1| Ribosomal RNA large subunit methyltransferase N [Oscillatoria sp. PCC 6506] gi|300335612|emb|CBN56260.1| Ribosomal RNA large subunit methyltransferase N [Oscillatoria sp. PCC 6506] Length = 349 Score = 199 bits (507), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 128/360 (35%), Positives = 186/360 (51%), Gaps = 31/360 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+G EL + + G P R Q+ +WIY +G+R +S S++ R L + Sbjct: 17 LLGANLAELTAWVQEQGQPA----YRAKQLHQWIYEKGVRSLSEISVFSKQWRESL-ANV 71 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 I I ++ D T K+LL+ I +E V IP + R T+CVSSQVGC + C Sbjct: 72 PIGRSIIHHRSVAPDQTVKYLLKLADGQI-----VEAVGIPTEKRLTVCVSSQVGCPMAC 126 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG R+L EI+ QVL + DF R++S+IV MGMG Sbjct: 127 DFCATGKGGFQRHLAKHEIVDQVLTVQE---DFK--------------RRVSHIVFMGMG 169 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVS 247 EPL N +NV ++ ++ +G+ +R IT+ST G I + E + V LA+SLH + Sbjct: 170 EPLLNLENVVAAVKCLNEDVGIG--QRNITISTVGIRDRIRLLAEHHLQVTLAVSLHGSN 227 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 LR L+P R Y + L++ CR Y ++ RR++ EY++L G+ND P A L L+ Sbjct: 228 QKLREKLIPSARNYRFDELMEECREYVKIT-GRRLSVEYILLAGVNDLPEHAAELADNLR 286 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 G +NLIP+NP +Y Q I F E +K + +R RGLD AACGQL++ Sbjct: 287 GFQCHVNLIPYNPIAEADYERPSQYRIKVFVEALKARHIAVSVRYSRGLDADAACGQLRA 346 >gi|300854446|ref|YP_003779430.1| hypothetical protein CLJU_c12600 [Clostridium ljungdahlii DSM 13528] gi|300434561|gb|ADK14328.1| conserved hypothetical protein [Clostridium ljungdahlii DSM 13528] Length = 345 Score = 199 bits (507), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 116/335 (34%), Positives = 183/335 (54%), Gaps = 23/335 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI WIY G DF M++I +++ L +F I E+V + C+ + +F Sbjct: 24 FRAKQIMDWIYKNGQCDFDNMTNIPKKLLEKLKTNFYIGTTELVKK---CESKFRDTFKF 80 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G + +ETV + K ++C+S+QVGC + C FC + +VRNLTA E+L Q+L Sbjct: 81 LYEYKDGNM-VETVVMKYKHGNSICISTQVGCRMGCKFCASTIDGMVRNLTAGEMLGQIL 139 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 +++ +G +ISNIV+MG GEPL N++NV K L I + + Sbjct: 140 KSQN-----------------EIGERISNIVLMGSGEPLDNYENVLKFLKIVNSEYSFNI 182 Query: 213 SKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 +R ITLST G VP I + + ++ + LAISLHA ++ +R ++PI KY ++ +IDAC+ Sbjct: 183 GQRHITLSTCGIVPKIKDLADRDLQITLAISLHAPNDVMRKKIMPIANKYSIKDVIDACK 242 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 +Y +R++FEY ++ G+NDS + L +++ G+ +NLIP N S Sbjct: 243 YYID-KTGKRVSFEYALVSGVNDSLKCCDELTELISGLLCHVNLIPVNEVKENNLKKSSS 301 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 D+ F + ++ + IR G DI AACGQL+ Sbjct: 302 DDVKKFYHRLIKNKIETTIRREMGSDIDAACGQLR 336 >gi|257065510|ref|YP_003145182.1| radical SAM enzyme, Cfr family [Slackia heliotrinireducens DSM 20476] gi|256793163|gb|ACV23833.1| radical SAM enzyme, Cfr family [Slackia heliotrinireducens DSM 20476] Length = 344 Score = 199 bits (507), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 118/340 (34%), Positives = 177/340 (52%), Gaps = 24/340 (7%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WIY RG + M+++S+ +R L++ + EI+D+++S DGTRK++++F Sbjct: 28 FRAKQLVQWIYGRGASTYDEMTNLSKALRQELSEKAPLRTAEIIDKQVSKDGTRKYVVQF 87 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G VE+ V +P + R T+C S+QVGC + CSFC TG + RNL E+L Q++ Sbjct: 88 YD---GAAVEM--VAMPYEDRMTVCFSTQVGCPMACSFCATGKEGFTRNLLPGEMLDQII 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 +A + R++SN+V MG GEPL N+DNV +L A+ G Sbjct: 143 IAEK-----------------DMNRRVSNLVGMGQGEPLLNYDNVMAALRFANSKDGRGI 185 Query: 213 SKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 R IT+ST G + I E+ LA+SLH+ + R+ L+P PL L A + Sbjct: 186 GARHITISTCGILKGIDDFSREKEQFTLAVSLHSAIQETRDELMPKVANQPLFRLKSALQ 245 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 Y + RR T EY+M+ G ND L+ + +NLIP N G + S + Sbjct: 246 TYVKRT-GRRATLEYIMINGYNDDDDHLDALVDFCDDLLCHVNLIPLNNIEGSPWQPSSK 304 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 K F + SG + +R RG DI ACGQLK+ K+ Sbjct: 305 KQTQKFLNVLNASGTEATLRDSRGADIDGACGQLKNKRKQ 344 >gi|159904144|ref|YP_001551488.1| putative Fe-S-cluster redox protein [Prochlorococcus marinus str. MIT 9211] gi|205829806|sp|A9BCH2|RLMN_PROM4 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|159889320|gb|ABX09534.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus str. MIT 9211] Length = 356 Score = 199 bits (506), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 134/376 (35%), Positives = 194/376 (51%), Gaps = 37/376 (9%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK L+G +LE+ + G P R QI +W+Y +G+R + +S + + R L Sbjct: 9 KKVVLLGQNVAKLEKLAQEYGEPA----FRGRQIHEWLYQKGVRKLEEISVLPKLWRTTL 64 Query: 65 -NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 +Q E V ++ DGT K LL R IE V IP SR T CVSSQVG Sbjct: 65 SDQGVCTGRLEEVKRLVANDGTIKLLLETSDR-----ESIEAVGIPTNSRLTTCVSSQVG 119 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 CS+ C FC TG R+L EI+ QVL R + R+ S+IV Sbjct: 120 CSMGCRFCATGKGGFQRSLEVHEIVDQVLSIRE-----------------AFDRRPSHIV 162 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIG 236 MGMGEPL N ++V +S+S ++ +G+ +RRIT+ST G V + ++ E + Sbjct: 163 FMGMGEPLLNIESVLESISCLNNDLGIG--QRRITVSTVGVVNTLPQLAELALAKLGRVQ 220 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 LA+SLHA + LR +LVP + YP++ L+ CRHY ++ RRI+FEY++L +ND Sbjct: 221 FTLALSLHAPNQHLREMLVPSAKVYPIQDLLSDCRHYLDIT-GRRISFEYILLATVNDKV 279 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 A L ++ G + +NLI +NP +Y I F ++ G + +R RGL Sbjct: 280 EHAEELADLISGFQSHVNLIAYNPIDEEDYQRPSLARINRFMTVLQSRGVAVSLRASRGL 339 Query: 357 DILAACGQLKSLSKRI 372 D AACGQL+ R+ Sbjct: 340 DQDAACGQLRHQHTRL 355 >gi|148240394|ref|YP_001225781.1| Fe-S-cluster redox protein [Synechococcus sp. WH 7803] gi|205829913|sp|A5GNG9|RLMN_SYNPW RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|147848933|emb|CAK24484.1| Predicted Fe-S-cluster redox enzyme [Synechococcus sp. WH 7803] Length = 351 Score = 199 bits (506), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 129/370 (34%), Positives = 191/370 (51%), Gaps = 37/370 (10%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 + ++L+G+ ELE + + Q R Q+ W+Y +G D Q ++ + + R L Sbjct: 6 QSKTLLGLGASELE----RWAVSQGQSAFRGRQLHDWLYAKGACDLQDITVLPKAWRASL 61 Query: 65 NQHFSII-YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 II + D K++ D T K LL +ETV IP R T+CVSSQVG Sbjct: 62 QDKGVIIGRLKEQDRKVAGDATTKLLL-----GTDDGETLETVGIPTDQRLTVCVSSQVG 116 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG L R+L EI+ QVL R ++ R+ S++V Sbjct: 117 CPMACRFCATGKGGLQRSLYTHEIVAQVLSVREVME-----------------RRPSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF---VPNIARVG-EEIG--- 236 MGMGEPL N + V ++ +D +G+ +RRIT+ST G +P +A + E +G Sbjct: 160 FMGMGEPLLNIEAVLDAIRCLNDDLGIG--QRRITVSTVGVPRTLPRLAELAMERLGRAQ 217 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 LA+SLHA + LR L+P YP + L+D CRHY ++ RR++FEY++L G+ND P Sbjct: 218 FTLAVSLHAPNQSLREELIPTAHAYPYDALLDDCRHYLAITG-RRVSFEYILLGGLNDHP 276 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 A L + G + +NLI +NP E+ + I F ++ G + +R RGL Sbjct: 277 AHAEELADRVGGFQSHVNLIAYNPIEEEEFQRPTRDRIEGFRRVLESRGVAVSLRASRGL 336 Query: 357 DILAACGQLK 366 D AACGQL+ Sbjct: 337 DQDAACGQLR 346 >gi|219847237|ref|YP_002461670.1| ribosomal RNA large subunit methyltransferase N [Chloroflexus aggregans DSM 9485] gi|219541496|gb|ACL23234.1| radical SAM enzyme, Cfr family [Chloroflexus aggregans DSM 9485] Length = 361 Score = 199 bits (506), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 126/359 (35%), Positives = 191/359 (53%), Gaps = 30/359 (8%) Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ-HFSIIYPE 74 EL E L G P R Q+++ +YV + M+D+ +R L + S + E Sbjct: 13 ELTELLKAWGEPP----FRARQLYRHLYVNLTASVERMTDLPTTLRRRLAELPLSTLRLE 68 Query: 75 IVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133 V +I G TRK L R P + +ETV + R T+CVS+Q GC + C FC T Sbjct: 69 RV--QIGDAGLTRKALFRLPDGAV-----VETVLMVYPDRSTVCVSTQAGCGMGCVFCAT 121 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 G L+RNL++ EI+ Q + A +++ M +++N+V MGMGEP N Sbjct: 122 GRLGLLRNLSSGEIVAQAIWA---------SQELRAMNAAGPSGRVTNLVFMGMGEPFAN 172 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252 +D +++ D G + R +T+ST G V I R+ E + + LAISLHA + LR+ Sbjct: 173 YDRWWQAVERLHDPQGFNLGARSMTVSTVGLVKGIERLANERLPINLAISLHAPDDTLRS 232 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK----- 307 L+P+NR+YP+ L+ A R Y + RR++FEYV+L+G ND P A+ L ++L+ Sbjct: 233 ELMPVNRRYPIAELMAATRQYIAKTR-RRVSFEYVLLQGKNDHPHQAIALARLLRREAPP 291 Query: 308 -GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I +NLIP+NP PG S+ + + F + + G +R RG++I AACGQL Sbjct: 292 GPILVHVNLIPWNPVPGTPLGRSEWERVNAFQQILTDYGIPCTVRVERGVEIAAACGQL 350 >gi|87125371|ref|ZP_01081217.1| hypothetical protein RS9917_08135 [Synechococcus sp. RS9917] gi|86167140|gb|EAQ68401.1| hypothetical protein RS9917_08135 [Synechococcus sp. RS9917] Length = 350 Score = 199 bits (506), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 132/376 (35%), Positives = 193/376 (51%), Gaps = 41/376 (10%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++ E+L+G EELE+ + G P R Q+ W+Y +G ++ + + R Sbjct: 5 VRPETLLGRSAEELEQWAVAQGQPA----FRGRQLHDWLYAKGAETLAAITVLPKAWRLA 60 Query: 64 LN-QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L Q I + D +++ D T K LL+ + IETV IP R T+CVSSQV Sbjct: 61 LEAQGVRIGRLQEQDRRVAADATTKLLLQTDDGEL-----IETVGIPTDQRLTVCVSSQV 115 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L R+L EI+ QVL R+++ R+ S++ Sbjct: 116 GCPMACRFCATGQGGLQRSLATHEIVDQVLSVRAVM-----------------DRRPSHV 158 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN---------IARVGE 233 V MGMGEPL N D V ++ + +G+ +RRIT+ST G VP +AR+G Sbjct: 159 VFMGMGEPLLNIDAVLGAIRCLHNDLGI--GQRRITVSTVG-VPRTLPQLAELAMARLG- 214 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 LA+SLHA + LR L+P YP + L+ CRHY L+ RR++FEY++L G+N Sbjct: 215 RAQFTLAVSLHAPNQALREELIPTAHAYPYDDLLQDCRHYLELTG-RRVSFEYILLGGLN 273 Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353 D+P A L + G + +NLI +NP + + I F ++R G + +R Sbjct: 274 DAPTHAEELADRVGGFQSHVNLIAYNPIEEGAFQRPSAERINGFRRVLERRGVAVSLRAS 333 Query: 354 RGLDILAACGQLKSLS 369 RGLD AACGQL+ S Sbjct: 334 RGLDQDAACGQLRRRS 349 >gi|145352684|ref|XP_001420668.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144580903|gb|ABO98961.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 254 Score = 199 bits (506), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 106/244 (43%), Positives = 151/244 (61%), Gaps = 20/244 (8%) Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FCYT L +NL+A +I+ QV+ AR ++G ++SN+V M Sbjct: 1 MNCQFCYTAKMGLRKNLSAAQIVEQVVQARRMVG----------------ASEVSNVVFM 44 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N D V K++SI D GL FS+ ++T+STSG VP + R E LA+SL+A Sbjct: 45 GMGEPLHNVDEVLKAVSILLDPKGLGFSRNKVTVSTSGLVPQMERFLRESEASLAVSLNA 104 Query: 246 VSNDLRNILVPINRKYPLEMLIDAC-RHYPGLS---NARRITFEYVMLKGINDSPRDALN 301 ++ +RN ++PINRKY LEML+ R +P S + R++ FEY+ML+G+NDS DA Sbjct: 105 TTDYIRNWIMPINRKYNLEMLLGLLRREFPRQSLGRHQRQVFFEYIMLEGVNDSDEDADR 164 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L++I + IP KINLI FN G E+ CSDQ+ I F + + +G + IR RG + ++A Sbjct: 165 LVEIARDIPCKINLIYFNTHDGSEFKCSDQERINAFRQRVSDAGVTCTIRQSRGDEEMSA 224 Query: 362 CGQL 365 CGQL Sbjct: 225 CGQL 228 >gi|17227851|ref|NP_484399.1| hypothetical protein all0355 [Nostoc sp. PCC 7120] gi|17129700|dbj|BAB72313.1| all0355 [Nostoc sp. PCC 7120] Length = 322 Score = 199 bits (505), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 123/339 (36%), Positives = 179/339 (52%), Gaps = 27/339 (7%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93 R Q+ WIY +G+R +S S++ R + I I ++ DGT K+LL+ Sbjct: 10 RGKQLHDWIYHKGVRSLTDISVFSKQWRAAVAD-VPIGRSTIHHRSVASDGTVKYLLQLS 68 Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153 I +E V IP R T+CVS+QVGC + C FC TG RNL EI+ QVL Sbjct: 69 DGEI-----VEAVGIPTDKRLTVCVSTQVGCPMACDFCATGKGGYKRNLERHEIVDQVLT 123 Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213 + ED + +++S++V MGMGEPL N +NV L + +G+ Sbjct: 124 VQ---------EDFQ--------QRVSHVVFMGMGEPLLNTENVLAGLRSLNQDVGIG-- 164 Query: 214 KRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 +R +TLST G I+ + E + V LA+SLHA + LR L+P R Y +E L+ CR Sbjct: 165 QRSLTLSTVGIRDRISELAEHHLQVTLAVSLHAPNQALREQLIPSARSYHIEDLLAECRE 224 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y ++ RRI+FEY++L G+ND P AL L K L+G +NLIP+N +Y Sbjct: 225 YVAIT-GRRISFEYILLAGVNDLPEHALELSKHLRGFQNHVNLIPYNSIDEVDYKRPSGD 283 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 I F +++ + +R RGL+ AACGQL++ + R Sbjct: 284 RIQAFLTVLQQQHIAVSVRYSRGLEADAACGQLRTKASR 322 >gi|317133046|ref|YP_004092360.1| radical SAM enzyme, Cfr family [Ethanoligenens harbinense YUAN-3] gi|315471025|gb|ADU27629.1| radical SAM enzyme, Cfr family [Ethanoligenens harbinense YUAN-3] Length = 342 Score = 199 bits (505), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 126/369 (34%), Positives = 194/369 (52%), Gaps = 32/369 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K L M EEL +G P + Q++ W++ RG+ F M+D S+ R +L Sbjct: 3 EKRDLKSMDIEELGAFFRALGAPA----YKAKQVFAWLH-RGVGSFDEMTDQSKAFRAVL 57 Query: 65 NQHFSIIYPEIVDEKISC-DGTRKWLLRFP-ARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 +H I + V S DGT K+L C+ ETV + ++C+S+Q Sbjct: 58 EEHALITRVQTVRRLESVLDGTVKYLFALSDGECV------ETVMMRYSYGDSVCISTQA 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC + L R+L E+L Q+L V GRK+S++ Sbjct: 112 GCRMGCGFCASTLGGLHRSLAPSEMLDQIL-----------------AVTKDTGRKVSHV 154 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 V+MG+GEPL N++NV K L + S GL+ S R ++LST G V I R+ EE + + L++ Sbjct: 155 VLMGIGEPLDNYENVVKFLHLLSCKGGLNMSLRHVSLSTCGLVDGIRRLMEEKLQLTLSV 214 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++ +R+ ++P+NRK+ + L+ ACR Y + RRI+FEY M+ G+ND+P A Sbjct: 215 SLHAPNDAIRSSIMPVNRKWGVNTLLAACRDYIE-ATGRRISFEYAMIDGVNDTPACAKE 273 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L L+G+ +NLIP NP Y S + + F + G + +R G DI A+ Sbjct: 274 LAARLRGMLCHVNLIPANPVKERSYQKSPAEKVERFRRLLAGFGLTVTVRRTLGADIQAS 333 Query: 362 CGQLKSLSK 370 CGQL+ ++ Sbjct: 334 CGQLRQAAR 342 >gi|269127610|ref|YP_003300980.1| radical SAM enzyme, Cfr family [Thermomonospora curvata DSM 43183] gi|268312568|gb|ACY98942.1| radical SAM enzyme, Cfr family [Thermomonospora curvata DSM 43183] Length = 388 Score = 199 bits (505), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 127/348 (36%), Positives = 186/348 (53%), Gaps = 33/348 (9%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVR-HLLNQHFSIIYPEIVDEKISCDG--TRKWL 89 R Q+ + + R + D M+D+ VR HL + + E+ + CDG TRK L Sbjct: 62 FRAQQLSRHYFTRLVDDPAQMTDLPAAVREHLAAELLPTLLTEV--RALDCDGGATRKTL 119 Query: 90 LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149 R G + IE+V + R T+CVSSQ GC + C FC TG L RNL+ EI+ Sbjct: 120 WR----AFDGTL-IESVLMRYPDRITMCVSSQAGCGMNCPFCATGQAGLTRNLSTGEIVE 174 Query: 150 QVL-----LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIA 204 QV+ LAR + PG +ISNIV MGMGEPL N+ V ++ Sbjct: 175 QVVAGARALARGKIAGGPG--------------RISNIVFMGMGEPLANYKAVLGAIRRI 220 Query: 205 SDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKY 261 +D GL S+R +T+ST G VP IAR+ +E + V LA+SLHA ++LR+ LVP+N ++ Sbjct: 221 TDPAPDGLGISQRSVTVSTVGLVPAIARLADEGLSVRLAVSLHAPDDELRDELVPVNTRW 280 Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPW 321 + ++DA Y + RR++ EY +++ +ND A L ++LKG +NLIP NP Sbjct: 281 KVREVLDAAWAYADRTG-RRVSIEYALIRDVNDQAWRADLLGRLLKGHLVHVNLIPLNPT 339 Query: 322 PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369 PG ++ S +D F ++ G +R RG +I ACGQL + + Sbjct: 340 PGSKWTASRPRDEREFVARLQAHGVPVTVRDTRGREIDGACGQLAAAT 387 >gi|302851668|ref|XP_002957357.1| hypothetical protein VOLCADRAFT_42666 [Volvox carteri f. nagariensis] gi|300257316|gb|EFJ41566.1| hypothetical protein VOLCADRAFT_42666 [Volvox carteri f. nagariensis] Length = 307 Score = 198 bits (504), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 116/295 (39%), Positives = 166/295 (56%), Gaps = 22/295 (7%) Query: 81 SCDGTRKWLLRFP-ARCIGGPVEIETVYIP------EKSRGTLCVSSQVGCSLTCSFCYT 133 + DGTRK + GG VE TV IP + R T+CVSSQVGC++ C FCYT Sbjct: 11 AADGTRKLVFTLTEGEAAGGSVE--TVLIPIVRQQGLRDRLTICVSSQVGCAMNCQFCYT 68 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 G L+ NLT +I+ QV+ AR L EG +++N+V MGMGEPL N Sbjct: 69 GRMGLLGNLTTAQIVEQVVEARRFLAQ-------EGERT-----QLTNLVFMGMGEPLHN 116 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNI 253 + V + I S +GL S ++T+ST G VP + V V +A+SLHA ++++R+ Sbjct: 117 TEAVLAAADIVSHYLGLHISHNKVTISTVGLVPEMRSVVARSRVQMALSLHATTDEVRDW 176 Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313 +VP+NR+Y L L A G S++R + EY ML GIND+ +DA L+ +L + K+ Sbjct: 177 IVPVNRRYDLATLTAALEEL-GNSSSRSLLIEYTMLHGINDTLQDAHRLVAMLARVNCKV 235 Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 NLI FNP G + S ++ + F + ++G IR RG D +AACGQL ++ Sbjct: 236 NLIMFNPHAGTRFQPSTEEAVTAFRSALVQAGMVCTIRDSRGDDEMAACGQLGNV 290 >gi|300087719|ref|YP_003758241.1| Cfr family radical SAM protein [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527452|gb|ADJ25920.1| radical SAM enzyme, Cfr family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 341 Score = 198 bits (504), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 123/360 (34%), Positives = 180/360 (50%), Gaps = 31/360 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L+GM EL + +G R +Q+ +W+Y R M+++ R+ L + Sbjct: 9 TLLGMNTAELRQLAETLG----QSAFRGNQLAEWLYHRDAAAIAEMTNLPAAFRYRLAEC 64 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 + P ++ + S DGT K LL F ++ETV +P R + CVS+Q GC + Sbjct: 65 YPTGRPVVITRRQSDDGTLKLLLEF-----ADGEQVETVGLPYHDRYSCCVSTQAGCPVG 119 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C+FC TG R L+A EI+ QVL V GR++ ++ MGM Sbjct: 120 CAFCATGQGGYRRQLSAGEIVAQVL-----------------AVSREAGRRVDHVTFMGM 162 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAV 246 GEPL N+D K+L + D +G++ R +T+ST G VP I R+ E + V LA+SLH Sbjct: 163 GEPLLNYDATVKALHLLRDEVGIA--ARHLTVSTIGHVPGILRLARENLPVTLALSLHTP 220 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 R L+P R P E++ H+ RR+T EY +L G+ND P DA L +L Sbjct: 221 DEVTRRRLIPGLRSTPAEIVTAGREHFA--LTGRRLTVEYCLLDGVNDRPEDASALAVLL 278 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +G INLIPFNP + S + F ++ +G+ R RG DI AACGQL+ Sbjct: 279 EGTGFHINLIPFNPTDDLPFRPSPATTVERFMNRLRAAGFEVTARVRRGADIEAACGQLR 338 >gi|313205950|ref|YP_004045127.1| 23S rRNA m(2)a-2503 methyltransferase [Riemerella anatipestifer DSM 15868] gi|312445266|gb|ADQ81621.1| 23S rRNA m(2)A-2503 methyltransferase [Riemerella anatipestifer DSM 15868] gi|315022263|gb|EFT35291.1| radical SAM enzyme, Cfr family protein [Riemerella anatipestifer RA-YM] gi|325336610|gb|ADZ12884.1| Predicted Fe-S-cluster redox enzyme [Riemerella anatipestifer RA-GD] Length = 345 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 129/357 (36%), Positives = 196/357 (54%), Gaps = 26/357 (7%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 +EL++ + IG R Q++ W++ + + M+++S+ +R + Q F +I P Sbjct: 10 DELKDYFISIG----EKPFRAKQVYDWLWSKNGHSIEEMTNLSKNLRERIAQDF-VIKPV 64 Query: 75 IVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133 VD + S DGT K ++ + + +E+V IP +R T CVSSQVGCSL C FC T Sbjct: 65 KVDLLQKSKDGTIKNGVK-----LHDGLMVESVLIPTDTRTTACVSSQVGCSLNCEFCAT 119 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 K +RNL EI+ QV L I+ R +SNIV MGMGEP+ N Sbjct: 120 ARLKRMRNLEVAEIVDQVAL-------------IDQQSKAYFDRPLSNIVFMGMGEPMMN 166 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252 + NV +++ ++ GL S RRIT+STSG I + +E + V LA+SLH+ RN Sbjct: 167 YKNVVEAIRKITEPEGLGMSPRRITVSTSGIPKMIKMLADENLKVKLALSLHSAIESKRN 226 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312 ++P + K+PL ++++ +++ + + IT EY + KGIND+ D LIK K +P K Sbjct: 227 EIMPFSTKFPLTDIMESLQYWYEKTGSI-ITLEYCIWKGINDTDEDIKALIKFCKKVPTK 285 Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369 +NLI +N +Y S+ K + E ++R G + IR RG DI AACGQL + S Sbjct: 286 VNLIEYNSIGDGKYDRSNPKATQNYVEQLERHGITVMIRRSRGGDIDAACGQLANKS 342 >gi|254431713|ref|ZP_05045416.1| radical SAM enzyme, Cfr family [Cyanobium sp. PCC 7001] gi|197626166|gb|EDY38725.1| radical SAM enzyme, Cfr family [Cyanobium sp. PCC 7001] Length = 354 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 129/376 (34%), Positives = 188/376 (50%), Gaps = 48/376 (12%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + L+GM +LE G P R Q+ W+Y +G R +S + + R Q Sbjct: 3 QPLLGMGLADLERWAQDQGQPA----FRGRQLHDWLYAKGARSLDAVSVLPKAWR---EQ 55 Query: 67 HFSIIYPEIVD---------EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLC 117 + P D ++ DGT K LL + IETV IP R T+C Sbjct: 56 LLAEPPPGATDWIGRSRELHRSVARDGTTKLLL-----ATADGLSIETVGIPAPGRLTVC 110 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 VSSQVGC + C FC TG L R+L EI+ QVL R ++G+ P Sbjct: 111 VSSQVGCPMACRFCATGKGGLQRSLAVHEIVDQVLSVREVMGERP--------------- 155 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF---VPNIA-RVGE 233 S++V MGMGEPL N + V ++ +G++ +R+IT+ST G +P +A R E Sbjct: 156 --SHVVFMGMGEPLLNIEAVLAAIDCLCTDLGMA--QRQITVSTVGVPRTLPTLAERALE 211 Query: 234 EIG---VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 +G LA+SLHA LR L+P YP+E L+D CR Y ++ RR++FEY++L Sbjct: 212 RLGRAQFTLAVSLHAPDQRLREELIPTAHAYPIEALLDDCRRYVAITG-RRVSFEYILLG 270 Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI 350 G+ND P A L ++++G + +NLIP+NP E+ + F ++ + + Sbjct: 271 GLNDQPHHAEALARLIRGFQSHVNLIPYNPIEEEEFQRPSPAAVEAFRWALQERRVAVSV 330 Query: 351 RTPRGLDILAACGQLK 366 R RGLD AACGQL+ Sbjct: 331 RASRGLDADAACGQLR 346 >gi|226366029|ref|YP_002783812.1| ribosomal RNA large subunit methyltransferase N [Rhodococcus opacus B4] gi|254807198|sp|C1B2V0|RLMN_RHOOB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|226244519|dbj|BAH54867.1| putative rRNA methyltransferase [Rhodococcus opacus B4] Length = 369 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 132/364 (36%), Positives = 198/364 (54%), Gaps = 36/364 (9%) Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75 E EA+ ++G+P R Q+ + Y R D + M+D+ VR Q + ++P + Sbjct: 28 ERREAVKELGLPG----FRADQLARQYYARLEADPEKMTDLPAAVRE---QVGAALFPTL 80 Query: 76 VD--EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131 + + ++CDG TRK L + + +E+V + R TLC+SSQ GC + C FC Sbjct: 81 LTAVKHLACDGGDTRKTLWKANDGTL-----LESVLMRYPDRATLCISSQAGCGMACPFC 135 Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191 TG L RNL+ EI+ QV A + L D D+ G GR +SN+V MGMGEPL Sbjct: 136 ATGQGGLQRNLSTAEIVDQVRAAAAALRDG----DVHG----GPGR-LSNVVFMGMGEPL 186 Query: 192 CNFDN----VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAV 246 N+ V++ S A D +GL S+R +T+ST G P I ++ E++ V LA+SLH Sbjct: 187 ANYKRVVAAVRRITSPAPDGLGL--SQRSVTVSTVGLAPAIRKLADEDLSVTLAVSLHTP 244 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++LR+ LVP+N ++ + ++DA R+Y S RR++ EY +++ +ND P A L K L Sbjct: 245 DDELRDTLVPVNNRWSVAEVLDAARYYADKSG-RRVSIEYALIRDVNDQPWRADMLGKKL 303 Query: 307 K---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 + G +NLIP NP PG E+ S + F + G S +R RG +I AACG Sbjct: 304 RKALGPLVHVNLIPLNPTPGSEWDASPKPVEKEFVRRVLAQGVSCTVRDTRGQEIAAACG 363 Query: 364 QLKS 367 QL + Sbjct: 364 QLAA 367 >gi|153815685|ref|ZP_01968353.1| hypothetical protein RUMTOR_01921 [Ruminococcus torques ATCC 27756] gi|331088258|ref|ZP_08337177.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae bacterium 3_1_46FAA] gi|145846926|gb|EDK23844.1| hypothetical protein RUMTOR_01921 [Ruminococcus torques ATCC 27756] gi|330408502|gb|EGG87968.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae bacterium 3_1_46FAA] Length = 355 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 118/354 (33%), Positives = 193/354 (54%), Gaps = 29/354 (8%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 EEL++ L ++G R QI++W++V+ F M+++S ++R L + + I + Sbjct: 18 EELQKELERLGEKP----FRAKQIYEWLHVKLADRFDEMTNLSVKLREKLAEEYDIFPVQ 73 Query: 75 IVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133 + + + S DGT K+L R G + +E+V + K ++C+SSQ GC + C FC + Sbjct: 74 MAERQQSKLDGTNKFLFRL----YDGNM-VESVLMRYKHGNSVCISSQAGCRMGCVFCAS 128 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 L RNL+A E+L Q+ + ++G+ ++SN+V+MG GEPL N Sbjct: 129 TIGGLKRNLSASEMLGQIYQIQKIIGE-----------------RVSNVVIMGTGEPLDN 171 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252 ++N K + I +D GL+ S+R +T+ST G VP I + EE + + LA+SLH + + R Sbjct: 172 YNNFLKFIHILTDEHGLNISQRNVTVSTCGIVPKILELAEERLQITLALSLHGSTQEKRR 231 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312 L+P+ KY L ++ AC Y RR+TFEY ++ +ND+ DA L ++L Sbjct: 232 KLMPVANKYELGEVLSACDTYFK-KTGRRVTFEYSLVHEVNDTDEDAKELSELLAPRNCH 290 Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +NLIP NP + +K + F +++SG + IR G DI ACGQL+ Sbjct: 291 LNLIPVNPVKERSFQRPSRKSALNFKNKLEKSGINVTIRREMGSDIDGACGQLR 344 >gi|317501928|ref|ZP_07960112.1| cfr family Radical SAM enzyme [Lachnospiraceae bacterium 8_1_57FAA] gi|316896608|gb|EFV18695.1| cfr family Radical SAM enzyme [Lachnospiraceae bacterium 8_1_57FAA] Length = 348 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 118/354 (33%), Positives = 193/354 (54%), Gaps = 29/354 (8%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 EEL++ L ++G R QI++W++V+ F M+++S ++R L + + I + Sbjct: 11 EELQKELERLGEKP----FRAKQIYEWLHVKLADRFDEMTNLSVKLREKLAEEYDIFPVQ 66 Query: 75 IVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133 + + + S DGT K+L R G + +E+V + K ++C+SSQ GC + C FC + Sbjct: 67 MAERQQSKLDGTNKFLFRL----YDGNM-VESVLMRYKHGNSVCISSQAGCRMGCVFCAS 121 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 L RNL+A E+L Q+ + ++G+ ++SN+V+MG GEPL N Sbjct: 122 TIGGLKRNLSASEMLGQIYQIQKIIGE-----------------RVSNVVIMGTGEPLDN 164 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252 ++N K + I +D GL+ S+R +T+ST G VP I + EE + + LA+SLH + + R Sbjct: 165 YNNFLKFIHILTDEHGLNISQRNVTVSTCGIVPKILELAEERLQITLALSLHGSTQEKRR 224 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312 L+P+ KY L ++ AC Y RR+TFEY ++ +ND+ DA L ++L Sbjct: 225 KLMPVANKYELGEVLSACDTYFK-KTGRRVTFEYSLVHEVNDTDEDAKELSELLAPRNCH 283 Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +NLIP NP + +K + F +++SG + IR G DI ACGQL+ Sbjct: 284 LNLIPVNPVKERSFQRPSRKSALNFKNKLEKSGINVTIRREMGSDIDGACGQLR 337 >gi|296139393|ref|YP_003646636.1| radical SAM enzyme, Cfr family [Tsukamurella paurometabola DSM 20162] gi|296027527|gb|ADG78297.1| radical SAM enzyme, Cfr family [Tsukamurella paurometabola DSM 20162] Length = 371 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 127/369 (34%), Positives = 196/369 (53%), Gaps = 32/369 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L + +EL++A++ +G+P + R +Q+ + Y R D M+D+ R + + Sbjct: 21 LADLTDDELQQAVVDLGLP----KFRANQLARHYYGRLEADAATMTDLPASARGTVGE-- 74 Query: 69 SIIYPEIVD--EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + PE++ I+ D TRK L R + +E+V + R TLC+SSQ GC Sbjct: 75 -ALLPELMSPIRHIATDSGTTRKTLWRLHDGTL-----LESVLMRYTDRATLCISSQAGC 128 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EI+ QV A + D G V GR +SN+V Sbjct: 129 GMACPFCATGQGGLDRNLSTAEIVDQVRSAAKAMQD--------GDVAGGPGR-LSNVVF 179 Query: 185 MGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 MGMGEPL N+ V +++ + GL S+R +T+ST G P I ++ +E + V LA+ Sbjct: 180 MGMGEPLANYKRVVQAVRRITSPAPEGLGISQRHVTVSTVGLAPAIRKLADEGLSVTLAV 239 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH ++LR+ LVP+N ++ + ++DA R+Y RR++ EY +++ +ND P A Sbjct: 240 SLHTPDDELRDTLVPVNNRWSVAEVLDAARYYAD-QTGRRVSIEYALIRDVNDQPWRADM 298 Query: 302 LIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 L + L+ G A +NLIP NP PG E+ S + F + G S +R RG +I Sbjct: 299 LGEKLRTKLGQFAHVNLIPLNPTPGSEWDASPKDRQDEFVRRVIAQGVSCTVRDTRGQEI 358 Query: 359 LAACGQLKS 367 AACGQL + Sbjct: 359 AAACGQLAA 367 >gi|111023545|ref|YP_706517.1| hypothetical protein RHA1_ro06586 [Rhodococcus jostii RHA1] gi|123144166|sp|Q0S277|RLMN_RHOSR RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|110823075|gb|ABG98359.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length = 369 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 133/373 (35%), Positives = 201/373 (53%), Gaps = 36/373 (9%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + L + E EA+ ++G+P R Q+ + Y R D + M+D+ VR Q Sbjct: 19 KHLADLDSAERREAVKELGLPG----FRADQLARQYYARLEADPEKMTDLPAAVRE---Q 71 Query: 67 HFSIIYPEIVD--EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + ++P ++ + ++CDG TRK L + + +E+V + R TLC+SSQ Sbjct: 72 VGAALFPTLLTPVKHLACDGGDTRKTLWKANDGTL-----LESVLMRYPDRATLCISSQA 126 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RNL+ EI+ QV A + L D D+ G GR +SN+ Sbjct: 127 GCGMACPFCATGQGGLQRNLSTAEIVDQVRAAAAALRDG----DVHG----GPGR-LSNV 177 Query: 183 VMMGMGEPLCNFDN----VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGV 237 V MGMGEPL N+ V++ S A D +GL S+R +T+ST G P I ++ E++ V Sbjct: 178 VFMGMGEPLANYKRVVAAVRRITSPAPDGLGL--SQRSVTVSTVGLAPAIRKLADEDLSV 235 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 LA+SLH ++LR+ LVP+N ++ + ++DA R+Y S RR++ EY +++ +ND P Sbjct: 236 TLAVSLHTPDDELRDTLVPVNNRWSVAEVLDAARYYADKSG-RRVSIEYALIRDVNDQPW 294 Query: 298 DALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 A L K L+ G +NLIP NP PG E+ S + F + G S +R R Sbjct: 295 RADLLGKKLRKALGPLVHVNLIPLNPTPGSEWDASPKPVEKEFVRRVLAQGVSCTVRDTR 354 Query: 355 GLDILAACGQLKS 367 G +I AACGQL + Sbjct: 355 GQEIAAACGQLAA 367 >gi|227872151|ref|ZP_03990521.1| Fe-S-cluster redox protein [Oribacterium sinus F0268] gi|227842009|gb|EEJ52269.1| Fe-S-cluster redox protein [Oribacterium sinus F0268] Length = 359 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 113/340 (33%), Positives = 181/340 (53%), Gaps = 30/340 (8%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKIS-CDGTRKWLLRF 92 R Q++ W++ + + ++ M++I + +R L + +S+ PE S D T K+L R Sbjct: 36 RAEQLFSWLHEKAVEEYTEMTNIPKAMREKLAEGYSVALPEADLHLCSKMDDTEKFLFR- 94 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + +IE+V++ + + C+S+QVGC + C+FC + L RN T E+L Q+ Sbjct: 95 ----LSDGHKIESVFMRYQHGNSACISTQVGCRMGCAFCASTLDGLARNCTTGEMLGQIY 150 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 L G++IS++V+MG GEPL N++ V + L I SD G + Sbjct: 151 AMEKL-----------------TGQRISHVVLMGSGEPLDNYEEVTRFLRIISDEKGKNL 193 Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S R ITLST G VP I + +E G+ LA+SLHA +++ R ++PI +Y L ++ A + Sbjct: 194 SIRNITLSTCGLVPRIYDLAKENYGITLALSLHAPTDEQRRKIMPIANRYSLSEIMPAVK 253 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG-----IPAKINLIPFNPWPGCEY 326 Y RR++FEY ++ G+ND D L +LKG P +NLIP NP + Sbjct: 254 EYFK-KTGRRVSFEYALVLGVNDGEEDRKALADLLKGEKGEHFPCHVNLIPVNPIKERTF 312 Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 D+K + F E +++ G + +R G DI ACGQL+ Sbjct: 313 APPDRKRVYAFQEYLQKRGITCTVRREMGADIAGACGQLR 352 >gi|282859577|ref|ZP_06268681.1| radical SAM enzyme, Cfr family [Prevotella bivia JCVIHMP010] gi|282587628|gb|EFB92829.1| radical SAM enzyme, Cfr family [Prevotella bivia JCVIHMP010] Length = 344 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 119/368 (32%), Positives = 198/368 (53%), Gaps = 29/368 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K L+G EL++ ++G+P Q+ +W+YV+ ++ M++IS+ R Sbjct: 3 INKLPLLGKTLFELKQVAKELGLPA----FAGKQMAEWLYVKHVKSIDEMTNISKANREK 58 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L ++I +D + S DGT K+L FP G +ETVYIP++ R TLCVSSQVG Sbjct: 59 LESVYTIGCKAPIDAQHSQDGTIKYL--FPTE--RGKF-VETVYIPDEDRATLCVSSQVG 113 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG Q +L+A +IL Q+ +P K++NIV Sbjct: 114 CKMNCLFCQTGKQGFEGSLSATDILNQIY------------------SLPERD-KLTNIV 154 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MG GEP+ N DNV ++ + + ++S +RIT+S+ G + R +E +AIS+ Sbjct: 155 FMGQGEPMDNLDNVLRTTELMTAEYAYAWSPKRITVSSVGLKSKLKRFLDESQCHVAISM 214 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ ++ R ++P + ++ ++D R+Y S+ RR++FEY++ G NDS A ++ Sbjct: 215 HSPLHEQREEIMPAEKGMRIQEVVDLLRNYD-FSHQRRLSFEYIVFGGKNDSMEYAKAIV 273 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++KG+ + NLI F+ P +D++ + F + + + G + IR RG DI AACG Sbjct: 274 DLVKGLDCRFNLIRFHQIPNVPLKGADRETMEKFRDYLTKHGVFTTIRASRGQDIFAACG 333 Query: 364 QLKSLSKR 371 L + K+ Sbjct: 334 LLSTAKKQ 341 >gi|145224701|ref|YP_001135379.1| radical SAM protein [Mycobacterium gilvum PYR-GCK] gi|205829813|sp|A4TC75|RLMN_MYCGI RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|145217187|gb|ABP46591.1| 23S rRNA m(2)A-2503 methyltransferase [Mycobacterium gilvum PYR-GCK] Length = 365 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 128/362 (35%), Positives = 191/362 (52%), Gaps = 36/362 (9%) Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75 E A+ +G+P R Q+ + R I D M+D+ VR +Q + ++PE+ Sbjct: 28 ERAAAVADLGLPA----FRGKQLANQYFGRLISDPSQMTDLPAGVR---DQVGAALFPEL 80 Query: 76 VD--EKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131 ++ +I CD TRK L R + E+V + R T+C+SSQ GC + C FC Sbjct: 81 LEAAREIECDRGETRKVLWRAVDKTT-----FESVLMRYPDRNTVCISSQAGCGMACPFC 135 Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191 TG L RNL+ EIL QV A + L D G ++SNIV MGMGEPL Sbjct: 136 ATGQGGLKRNLSTAEILEQVRFASAELRDREGG-------------RLSNIVFMGMGEPL 182 Query: 192 CNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248 N++ V ++ AS G S R +T+ST G P I ++ +E + V LA+SLH + Sbjct: 183 ANYNRVVAAVRRITASSPHGFGISARSVTVSTVGLAPAIRKLADEKLNVTLAVSLHTPDD 242 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK- 307 +LR+ LVP+N ++ ++ ++DA R+Y L+ RR++ EY +++ +ND P A L + L Sbjct: 243 ELRDTLVPVNNRWKVDEVLDAARYYADLT-GRRVSIEYALIRDVNDQPWRADLLGRKLHA 301 Query: 308 --GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 G +NLIP NP PG E+ S + F ++ G S +R RG +I AACGQL Sbjct: 302 TLGPLVHVNLIPLNPTPGSEWDASPKPVEREFVRRVRAKGVSCTVRDTRGREIAAACGQL 361 Query: 366 KS 367 + Sbjct: 362 AA 363 >gi|312194967|ref|YP_004015028.1| radical SAM enzyme, Cfr family [Frankia sp. EuI1c] gi|311226303|gb|ADP79158.1| radical SAM enzyme, Cfr family [Frankia sp. EuI1c] Length = 397 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 131/369 (35%), Positives = 187/369 (50%), Gaps = 30/369 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIR--DFQGMSDISQEVRHLLNQ 66 L + R+E +++G P R Q+ + + R D GM+D+ VR L Sbjct: 39 LADLSRDERRAVAVELGQPA----FRADQLARHYFTRLATPGDTAGMTDVPAAVRAPLAD 94 Query: 67 HFSIIYPEIVDEKISCDG-TRK--WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 DG TRK W R + G IE+V + R T+CVSSQ G Sbjct: 95 ALLPQLLTATTTLTCDDGATRKTAW------RTVDG-ATIESVLMRYPDRATVCVSSQAG 147 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISN 181 C + C FC TG L RNLT EI+ QV+ A +L G P + + ++SN Sbjct: 148 CGMGCPFCATGQGGLTRNLTVAEIVEQVVDAARVLRRGGLPAGQATD--------TRLSN 199 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARV-GEEIGVM 238 +V MGMGEPL N+ + +L SD GL S R +T+ST G VP I R+ GE + V Sbjct: 200 VVFMGMGEPLANYKALVTALRRISDPAPDGLGISARTLTVSTVGLVPAIGRLAGEGLPVR 259 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLHA ++LR+ LVPIN ++ + ++DA Y + RRI+ EY ++ G+ND P Sbjct: 260 LAVSLHAPDDELRDTLVPINTRWKVAEVLDAAWDYAARTG-RRISIEYALIDGVNDQPER 318 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L ++L+ P +NLIP NP G + S F ++ G ++ +R RG +I Sbjct: 319 ADLLGRLLRDRPVHVNLIPLNPTRGSSWHASAPAGEREFVARLRARGITTTVRDTRGREI 378 Query: 359 LAACGQLKS 367 AACGQL + Sbjct: 379 AAACGQLAA 387 >gi|78188796|ref|YP_379134.1| hypothetical protein Cag_0825 [Chlorobium chlorochromatii CaD3] gi|123770876|sp|Q3ASD4|RLMN_CHLCH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|78170995|gb|ABB28091.1| 23S rRNA m(2)A-2503 methyltransferase [Chlorobium chlorochromatii CaD3] Length = 366 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 126/372 (33%), Positives = 190/372 (51%), Gaps = 32/372 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L+ + EL A+ G P R QI +W++ F MS + +R L + Sbjct: 15 NLVDLRYNELHNAITAFGEPP----FRAKQIHEWLFSHHANSFAAMSSLPLRLREKLAER 70 Query: 68 FSIIYPEIVDEKISCDG-----TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 F++ PE+V+ + SC+ TRK LL+ + IE V IP + R T C+SSQ Sbjct: 71 FTLQRPEVVEVQESCESGCLRPTRKILLKLSDGAL-----IECVLIPAEERMTACLSSQA 125 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C+FC TGT L RNL+A EI Q+ + G+ + G+ I+N+ Sbjct: 126 GCPMQCTFCATGTMGLQRNLSAGEIWEQLY-------------ALNGLALQE-GKTITNV 171 Query: 183 VMMGMGEPLCNFDNVKKSL-SIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240 V MGMGEPL N DNV +++ +++S + LS S+R+IT+ST G VP I R+ + LA Sbjct: 172 VFMGMGEPLLNTDNVLEAIATMSSRNYNLSLSQRKITISTVGIVPEIERLSRSGLKTKLA 231 Query: 241 ISLHAVSNDLRNILVPI-NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 +SLH+ ++R L+PI +YPL +L + Y + IT Y+ML G+NDS DA Sbjct: 232 VSLHSARQEVRQQLMPIAAERYPLPLLSKSLEAYSK-ATGEAITIVYMMLNGVNDSKEDA 290 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L + + KINLI +NP + + F + + +R G + Sbjct: 291 HLLARYCRHFSCKINLIDYNPILTIRFGSVQESQKNEFQAYLMAQKFHVTVRKSYGASVN 350 Query: 360 AACGQLKSLSKR 371 AACGQL + +R Sbjct: 351 AACGQLVTQQQR 362 >gi|189485422|ref|YP_001956363.1| hypothetical protein TGRD_419 [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|205829922|sp|B1H070|RLMN_UNCTG RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|170287381|dbj|BAG13902.1| conserved hypothetical protein [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 350 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 118/339 (34%), Positives = 183/339 (53%), Gaps = 30/339 (8%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD-EKISCDGTRKWLLRF 92 R +QI +WIY + F+ ++I +E+R+ L++ F + +IV EK D T ++ R Sbjct: 33 RINQIIEWIYAKKAVSFESFTNIPKELRNKLDEKFFLRTLKIVKKEKSLIDSTIRYTFR- 91 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 V++P + ++C+SSQ+GC + C+FC +G KL RNL+ EI+ Q+L Sbjct: 92 ----TADKKYFFAVFLPANGKNSVCISSQIGCPIMCAFCSSGKTKLARNLSRGEIIEQIL 147 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 V KIS I+ MGMGEP+ NF+N+ L+ S Sbjct: 148 -----------------QVENDTKEKISGILFMGMGEPMLNFNNLISVLNSLLSSKEFGI 190 Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 KR IT+S+ G VP + ++ ++ GV LA+SLHAV R LVP N + +E ++ A + Sbjct: 191 GKRHITVSSVGIVPAVKKLADDNFGVRLALSLHAVDERQRKKLVPDNLGFSIEDILKAGK 250 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK-----GIPAKINLIPFNPWPGCEY 326 +Y +N+ +T EYV++KGIN S DA L ++LK ++NLIPFNP ++ Sbjct: 251 YYLKKTNS-HLTIEYVLVKGINISSADAHKLARLLKRCDLINSDVQVNLIPFNPVTDVQF 309 Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 D+K I F +K +G + +R +G +I AACGQL Sbjct: 310 QRPDKKSINKFKSILKLNGITVNVRQSKGANINAACGQL 348 >gi|256544909|ref|ZP_05472280.1| Cfr family radical SAM enzyme [Anaerococcus vaginalis ATCC 51170] gi|256399408|gb|EEU13014.1| Cfr family radical SAM enzyme [Anaerococcus vaginalis ATCC 51170] Length = 343 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 120/355 (33%), Positives = 190/355 (53%), Gaps = 30/355 (8%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 +ELEE +G + R Q+++ I+V I DF M+D+S+++R L+Q + Sbjct: 13 KELEEIFKNLGFQ----KFRAKQVFRQIHVNKINDFSKMTDLSKDMRKKLDQILYFPKIK 68 Query: 75 IVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133 I+ E K + D T+K+L I IE V++ +R T+C+SSQVGC + C+FC + Sbjct: 69 ILKEFKSNLDKTKKYLFELDDGNI-----IEAVFMEYDNRNTICISSQVGCKMGCNFCAS 123 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 L R+L A EI+ ++ L D I+NIV+MG+GEPL N Sbjct: 124 TKNGLERSLLASEIIEEIYLLERENSD------------------INNIVVMGIGEPLDN 165 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRN 252 F N++K + I +D G + S R IT+ST G V I ++ + + LA+SLH + R Sbjct: 166 FSNIEKFIKIITDDNGRNLSHRAITISTVGLVDKIYKLADLGYDINLAVSLHYAFDKKRM 225 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312 +P +KY ++ ++ AC +Y + RRI++EYV++ G+N+ D L K+ KG Sbjct: 226 EYMPSAKKYKIKDIVKACDYYFEKT-KRRISYEYVVIDGVNNLKEDIDKLEKLFKGKNIH 284 Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 INLIP NP +Y + + F + + G ++ IR G DI A+CGQL++ Sbjct: 285 INLIPLNPIEEFKYSKTKSNVMDQFQKKLSTRGLNATIRRSMGSDIDASCGQLRN 339 >gi|229826168|ref|ZP_04452237.1| hypothetical protein GCWU000182_01540 [Abiotrophia defectiva ATCC 49176] gi|229789038|gb|EEP25152.1| hypothetical protein GCWU000182_01540 [Abiotrophia defectiva ATCC 49176] Length = 348 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 119/364 (32%), Positives = 197/364 (54%), Gaps = 31/364 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + ++ + +EL + ++G P RT QI++WI+ + ++ + M+++ +R+ L+ Sbjct: 5 RNDIVSLNFDELASLIKELGEPA----FRTKQIYEWIHKKLVKGYDEMTNVPLALRNKLS 60 Query: 66 QHFSIIYPEI--VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + +PE+ V K S G +F + G V IE+V + + ++C+SSQVG Sbjct: 61 ERLP--FPELTEVARKDSASGDTS---KFVFKLYDGYV-IESVLMKYRYGNSVCISSQVG 114 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C+FC + L R L E+L Q+ + G ++SN+V Sbjct: 115 CRMGCTFCASTLLGLSRQLAPSEMLSQIY-----------------TIQRETGERVSNVV 157 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG GEPL NFDN+ K + + +D GL+ S+R IT+ST G NI R+ ++ + LAIS Sbjct: 158 VMGTGEPLDNFDNLIKFIELLTDEKGLNISQRNITVSTCGLTENIKRLADKKFAITLAIS 217 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +++ R ++PI KY + +++A +Y RRI++EY ++ G ND+P +A L Sbjct: 218 LHAPTDEDRKRIMPIANKYTISEIMEATDYYFD-KTGRRISYEYSLIDGENDTPENAEKL 276 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LKG +NLIP NP Y S K ++ F + ++ G + IR G DI AAC Sbjct: 277 AVLLKGKNCHVNLIPVNPIKERTYRSSTPKGVIRFKKILENRGINVTIREEMGQDIDAAC 336 Query: 363 GQLK 366 GQL+ Sbjct: 337 GQLR 340 >gi|291563554|emb|CBL42370.1| 23S rRNA m(2)A-2503 methyltransferase [butyrate-producing bacterium SS3/4] Length = 348 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 119/365 (32%), Positives = 197/365 (53%), Gaps = 29/365 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K+ L M EEL E + ++G R Q+++W++V+ +++ + ++ Sbjct: 1 MEKKDLKSMTLEELTEFVKELG----EKPFRAKQLYQWMHVKLAESLDECTNLPKSLKEK 56 Query: 64 LNQHFSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L+++ + + V + DGTRK+L G V IE+V + ++C+SSQV Sbjct: 57 LSEYSTYTSLKTVKMLESGIDGTRKYLFGLD----DGNV-IESVLMKYHHGNSVCISSQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC + L RNL E+L Q+ + S G ++SN+ Sbjct: 112 GCRMGCRFCASTLDGLTRNLRPSEMLDQIY-----------------RIQRSTGERVSNV 154 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 V+MG GEP+ N+DN+ + + + SD GL+ S+R IT+ST G VP I ++ EE + + LA+ Sbjct: 155 VVMGSGEPMDNYDNLIRFIRLLSDENGLNISQRNITVSTCGIVPKILKLAEEGLSITLAL 214 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++ R L+PI Y L ++ AC+ Y RR+TFEY +++G+ND+ +A Sbjct: 215 SLHAPDDETRKTLMPIANSYSLSEVLPACKEYYK-KTGRRLTFEYSLVQGVNDNLDEAKR 273 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L +LK + +NLIP NP ++ S++ I F +++ G + IR G DI A Sbjct: 274 LTALLKDMQGHVNLIPVNPIKERDFKQSNRDAIDAFRGYLEKHGINVTIRREMGRDIGGA 333 Query: 362 CGQLK 366 CGQL+ Sbjct: 334 CGQLR 338 >gi|78045218|ref|YP_360312.1| radical SAM protein [Carboxydothermus hydrogenoformans Z-2901] gi|123770585|sp|Q3AC22|RLMN_CARHZ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|77997333|gb|ABB16232.1| radical SAM enzyme, Cfr family [Carboxydothermus hydrogenoformans Z-2901] Length = 342 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 124/366 (33%), Positives = 195/366 (53%), Gaps = 37/366 (10%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 L E ++ ++E E++ R QI +WI+ G DF M+++ +R Sbjct: 7 LNSEEIVAWLKENNEKSF------------RLKQINEWIFKHGELDFNKMTNLPVRLREK 54 Query: 64 LNQHFSIIYPEIVDEKISCDGTR-KWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L ++F + +I+ K S DG K+LL+ + + IE V + + T+C+S+QV Sbjct: 55 LKENFLLPSLKIIHSKKSRDGQSIKYLLK-----LKDNLGIEAVLLKYRYGNTVCLSTQV 109 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG RNLTA E++ Q+L+ ++ S KI+ + Sbjct: 110 GCKMGCKFCATGLGGFSRNLTAGEMIEQILVLKA-----------------SSSEKITRV 152 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 V+MG GEPL NF V K + ++ L+ S R+IT+ST G VP I + EE + V LAI Sbjct: 153 VLMGSGEPLDNFTEVLKFMRKINEKDCLNISYRKITVSTCGMVPQIKALAEEKLPVTLAI 212 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA + LRN L+PIN+++ L L+DA ++ RR++FEY +++ +ND+ AL Sbjct: 213 SLHAPDDALRNELIPINKRWGLAELLDAAWYFID-KTGRRVSFEYALIENVNDTVEHALK 271 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++L+ +NLIP+N + + I F E +KR+G +R G +I A Sbjct: 272 LAQLLQRKLVHVNLIPYNTIEKRNFKTPSVEKINKFKEVLKRAGIPVTVRRELGDEIDGA 331 Query: 362 CGQLKS 367 CGQLK+ Sbjct: 332 CGQLKA 337 >gi|295106390|emb|CBL03933.1| 23S rRNA m(2)A-2503 methyltransferase [Gordonibacter pamelaeae 7-10-1-b] Length = 349 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 117/357 (32%), Positives = 185/357 (51%), Gaps = 29/357 (8%) Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76 L++ + +G P R Q+++W+Y+ + + M+++ Q +R L+ + + P ++ Sbjct: 19 LKQLMKDLGQPS----FRAKQLYEWLYLHHVGSYDEMTNLPQTLRVQLSADYPLFTPAVI 74 Query: 77 DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQVGCSLTCSFCYTGT 135 D + S DGT K+++ + +ETV IP R T+C S+Q GC++ C+FC TG Sbjct: 75 DSQTSQDGTAKYVISYH-----DGARVETVAIPSSDGRLTVCCSTQAGCAMGCTFCATGK 129 Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195 + RNL+A EI+ Q+L+A++ +G+ ++SN+V+MG GEP N++ Sbjct: 130 EGFTRNLSAGEIVDQILIAQTRMGE-----------------RVSNVVVMGQGEPFLNYE 172 Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNIL 254 +L I +D L+ R ITLST G + I R+G E LA+SLHA R+ + Sbjct: 173 QTLNALHILNDEKLLNIGARHITLSTCGILSGIDRLGTEPEQFTLAVSLHAAIQRTRDKI 232 Query: 255 VPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKIN 314 +P Y L L Y +N RR T EY M+ +ND+ D LI+ G+ +N Sbjct: 233 MPGVANYGLGKLKTVLLKYIERTN-RRATLEYAMMNRVNDNEEDLKALIEFCTGLLCHVN 291 Query: 315 LIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 LIP N E+ S + + + RSG + IR RG DI ACGQLK+ K Sbjct: 292 LIPLNEIEESEFSPSKAPTMNHWYLTLNRSGIETTIRHSRGSDIAGACGQLKNAVKH 348 >gi|159462948|ref|XP_001689704.1| predicted protein [Chlamydomonas reinhardtii] gi|158283692|gb|EDP09442.1| predicted protein [Chlamydomonas reinhardtii] Length = 358 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 127/374 (33%), Positives = 198/374 (52%), Gaps = 44/374 (11%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL---- 64 ++G ELEE + G P R R Q+ + + ++G R + ++ I +E R L Sbjct: 12 ILGRDTAELEELAARYGQP----RFRAKQLLEGV-LQGARSVEDITTIPKEWRAQLLADG 66 Query: 65 -NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 S+++ + D DGTRK+LL+ +G +ETV IP + R T+CVSSQVG Sbjct: 67 VRTGRSLLHHSVGD----ADGTRKFLLQ-----LGDGRIVETVGIPTEDRLTVCVSSQVG 117 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C+FC TG RNL EI+ QVL + L GR++SN+V Sbjct: 118 CPMRCTFCATGKGGFARNLAPHEIMDQVLTVQELY-----------------GRRVSNVV 160 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAI 241 MGMGEPL N +V ++ + +G+ + IT+ST G VPN R G ++ LA+ Sbjct: 161 FMGMGEPLLNLPSVTRAYHGLNKQIGIGGAF--ITISTVG-VPNAIRRLAGADLKATLAV 217 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA + LR ++P + YP+E L++ C Y RR+TFEY +L G+ND A Sbjct: 218 SLHAPNQALRESIIPSAKAYPIEALLEDCAAY-FKRTGRRVTFEYTLLSGVNDEVAHAQE 276 Query: 302 LIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L+ +L+ + + +N+IP+NP E+ + + F+ ++ +G +R RGL+ Sbjct: 277 LVALLQRYNLMSHVNVIPWNPVDESEFQRPSRNRVFAFTRAVEAAGLPCTVRETRGLEAA 336 Query: 360 AACGQLKSLSKRIP 373 AACGQL++ ++ P Sbjct: 337 AACGQLRNQFQKTP 350 >gi|281356702|ref|ZP_06243193.1| radical SAM enzyme, Cfr family [Victivallis vadensis ATCC BAA-548] gi|281316829|gb|EFB00852.1| radical SAM enzyme, Cfr family [Victivallis vadensis ATCC BAA-548] Length = 344 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 124/340 (36%), Positives = 178/340 (52%), Gaps = 27/340 (7%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R +QI W+Y +GI + + M+++ VR L+ F + + S DGT K LL Sbjct: 26 FRGTQIADWVYKKGIVEPERMNNLPLPVRELIGNEFLAPGTAVTETAGSGDGTEKLLL-- 83 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + IE V IP + R T C+S+QVGC + C FC +G L+RNL A EIL + L Sbjct: 84 ---TLQDGETIEMVLIPAEERLTFCLSTQVGCPVQCRFCASGRDGLIRNLAAGEILEEFL 140 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 L GC GR+ N+V MG+GE L NF + +L + S G Sbjct: 141 L---------GCS--------RAGRRPDNLVFMGIGEGLLNFRELAATLEVLSSPEGFGM 183 Query: 213 SKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S RRIT+STSG+VP + + E E LAISLHA ++ R+ L+P +YP+ ++ A Sbjct: 184 SPRRITVSTSGYVPGMLKFAELEREFTLAISLHAPDDETRSRLIPDKLRYPVAEIMAAAD 243 Query: 272 HYPGLSNA-RRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 Y L A R +T EY +L+G ND+P A L + K+NLIP+N G E+ Sbjct: 244 LY--LRKAGRMVTLEYTLLEGFNDTPPHARALGALAVRHRCKVNLIPYNST-GGEFRRPS 300 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 ++ I F E + +G +R RG +AACGQL++ +K Sbjct: 301 RQAIREFEETVAAAGAHVTVRVERGAKSVAACGQLRTRAK 340 >gi|313639429|gb|EFS04292.1| radical SAM enzyme, Cfr family [Listeria seeligeri FSL S4-171] Length = 281 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 114/281 (40%), Positives = 174/281 (61%), Gaps = 19/281 (6%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 IETV + ++ ++CV++QVGC++ C+FC +G K R+LTA EI+ Q++ + L D Sbjct: 5 IETVMMKQEYGLSVCVTTQVGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYL-DGR 63 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 E+ ++S++V+MG+GEP N+DNV L + + GL+ R IT+STS Sbjct: 64 NLEE-----------RVSHVVVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTS 112 Query: 223 GFVPNIAR-VGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281 G P I E+ V LAISLHA +N+LR ++ IN+ Y +E L++A +Y +N RR Sbjct: 113 GLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVEKTN-RR 171 Query: 282 ITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFS 338 ITFEY+MLKG+ND ++AL L +L A +NLIP+NP +Y S ++D++ F Sbjct: 172 ITFEYIMLKGVNDHKKEALELAGLLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFY 231 Query: 339 ECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQE 379 + +K++G + IR G DI AACGQL+ SK+I +V +E Sbjct: 232 DTLKKNGINCVIRREHGTDIDAACGQLR--SKQIKRVGVRE 270 >gi|313634805|gb|EFS01235.1| radical SAM enzyme, Cfr family [Listeria seeligeri FSL N1-067] Length = 281 Score = 196 bits (499), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 114/281 (40%), Positives = 174/281 (61%), Gaps = 19/281 (6%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 IETV + ++ ++CV++QVGC++ C+FC +G K R+LTA EI+ Q++ + L D Sbjct: 5 IETVMMKQEYGLSVCVTTQVGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYL-DGR 63 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 E+ ++S++V+MG+GEP N+DNV L + + GL+ R IT+STS Sbjct: 64 NLEE-----------RVSHVVVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTS 112 Query: 223 GFVPNIAR-VGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281 G P I E+ V LAISLHA +N+LR ++ IN+ Y +E L++A +Y +N RR Sbjct: 113 GLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVEKTN-RR 171 Query: 282 ITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFS 338 ITFEY+MLKG+ND ++AL L +L A +NLIP+NP +Y S ++D++ F Sbjct: 172 ITFEYIMLKGVNDHKKEALELAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFY 231 Query: 339 ECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQE 379 + +K++G + IR G DI AACGQL+ SK+I +V +E Sbjct: 232 DTLKKNGINCVIRREHGTDIDAACGQLR--SKQIKRVGIRE 270 >gi|291166481|gb|EFE28527.1| radical SAM enzyme, Cfr family [Filifactor alocis ATCC 35896] Length = 345 Score = 196 bits (499), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 126/362 (34%), Positives = 196/362 (54%), Gaps = 32/362 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 L M E+EE +L +G + R QI+ ++ +G+ M +S++ R L + Sbjct: 4 DLRSMEYYEVEEVVLNLG----EKKYRAKQIYNFL-AKGVSSIDEMYTLSKDFREKLKER 58 Query: 68 FSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + I +I + + + DGTRK+L+ +G IETV + K+ ++C+S+QVGC + Sbjct: 59 YYICKTDIYHKLESNLDGTRKYLIE-----LGDGNLIETVLMIYKNGPSICLSTQVGCRM 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC + LVRNLT EI+ Q++ + LG+ +I+NIV+MG Sbjct: 114 GCKFCASTVDGLVRNLTPGEIIGQMITVQKDLGE-----------------RIANIVIMG 156 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV--MLAISLH 244 GEP NFDN+ K L + + GL R IT+ST G VP I R E++G+ LAISLH Sbjct: 157 SGEPFDNFDNLVKFLKLVHEDYGLQIGYRHITISTCGLVPKI-REMEKLGIPINLAISLH 215 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 V + R ++PI + Y +E LI+A +HY ++ RR+T+EY +++G+ DS +A L Sbjct: 216 QVEQNKREEIMPIAKVYDIEELIEAGKHYANVT-KRRVTYEYALIEGVTDSLEEAHKLGS 274 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKG + INLIP NP + + K + F + + + +R G DI ACGQ Sbjct: 275 LLKGSLSLINLIPINPIKEKSFKKPNLKRVQAFQKVLLNYHIITTVRRELGSDINGACGQ 334 Query: 365 LK 366 L+ Sbjct: 335 LR 336 >gi|330950791|gb|EGH51051.1| radical SAM protein [Pseudomonas syringae Cit 7] Length = 220 Score = 196 bits (499), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 103/232 (44%), Positives = 139/232 (59%), Gaps = 19/232 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ ++E+E+ IG R R Q+ KWI+ G+ DF M+++S+ +R L Sbjct: 7 KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 63 ACAEVRGPEVVSEDISSDGTRKWVVRVESGSC-----VETVYIPQGKRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV +A G P +V R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVP----------ATVDRAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDV 219 >gi|255535320|ref|YP_003095691.1| radical SAM enzyme, Cfr family protein [Flavobacteriaceae bacterium 3519-10] gi|255341516|gb|ACU07629.1| radical SAM enzyme, Cfr family protein [Flavobacteriaceae bacterium 3519-10] Length = 358 Score = 196 bits (498), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 127/358 (35%), Positives = 195/358 (54%), Gaps = 28/358 (7%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 EEL+ + +G R Q+++W++ + + M+++S+++R + Q ++I P Sbjct: 24 EELQNYFVTLG----EKPFRAKQVYEWLWSKNLHSIDEMTNLSKDLREKIAQEYTI-NPI 78 Query: 75 IVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133 VD+ + S DGT K ++ + +E+V IP ++R T CVSSQVGCSL C FC T Sbjct: 79 SVDQLQKSSDGTIKNGVKLHDGLL-----VESVLIPTETRTTACVSSQVGCSLNCEFCAT 133 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 K +RNL EI+ QV L I+ R +SNIV MGMGEP+ N Sbjct: 134 ARLKRMRNLEVAEIVDQVAL-------------IDRQSKMYFDRPLSNIVFMGMGEPMMN 180 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252 + NV +++ + GL + RRIT+STSG I + +E + V LA+SLH+ RN Sbjct: 181 YKNVVEAIRKITAPDGLGMAPRRITVSTSGIPKMIKMLADENLRVNLALSLHSAIEKTRN 240 Query: 253 ILVPINRKYPLEMLIDACRH-YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311 ++P + ++PL ++D+ +H Y N +TFEY + KGIND D LI+ K IP Sbjct: 241 EIMPFSDRFPLTDIMDSLKHWYEKTGNI--VTFEYCVWKGINDEDEDIKALIRYCKQIPC 298 Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369 K+NLI +NP +Y ++ + ++ +G + IR RG DI AACGQL + S Sbjct: 299 KVNLIQYNPIGDGKYDRCNKAAEENYVRQLENAGITVLIRRSRGGDIDAACGQLANKS 356 >gi|26554015|ref|NP_757949.1| hypothetical protein MYPE5630 [Mycoplasma penetrans HF-2] gi|81747712|sp|Q8EVK0|RLMN_MYCPE RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|26454023|dbj|BAC44353.1| conserved hypothetical protein [Mycoplasma penetrans HF-2] Length = 352 Score = 196 bits (498), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 124/363 (34%), Positives = 197/363 (54%), Gaps = 31/363 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 S+ +EL++ L K I QI+ WIY + + F M +IS+E L Q Sbjct: 5 SIYSFTLQELKKELTKNNIKA----FVAEQIFDWIYSKHVDSFDEMKNISKENIEKLKQL 60 Query: 68 FSIIYPEIVDEKISCD---GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 FS + +V +K+ D GT K+LL+ G IETV + ++CV+SQ+GC Sbjct: 61 FS--FENMVVDKLQVDKHDGTVKFLLKLE----DGNF-IETVIMKFNYGYSVCVTSQIGC 113 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 ++ C FC +G + RN+T E + Q ++A+ V + K++++V+ Sbjct: 114 NMACKFCASGLIRKKRNITVGEFIKQFIIAKEY-------------VEKNFNDKLTHMVV 160 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243 MG+GEP NF+N+ + + GL S R+IT+ST G V I + + V LAI L Sbjct: 161 MGIGEPFDNFENLIQFFEVIKQQKGLCISPRKITVSTCGLVEKIKEFADLKNQVNLAILL 220 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +N++RN ++PIN+ Y L+ +I+A +Y ++ RR+T EY+++K +NDS +A+ L Sbjct: 221 HAPNNEIRNKIMPINKVYSLDKVIEAMDYYIKVT-KRRVTIEYILIKDVNDSDENAVELA 279 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+LKG +NLIP+N Y S + F + +K++ + IR RG I AACG Sbjct: 280 KLLKGKLCYVNLIPYNKVVENNYFRSVRGK--QFFDVLKKNNIQATIRLERGSSIDAACG 337 Query: 364 QLK 366 QL+ Sbjct: 338 QLR 340 >gi|284929286|ref|YP_003421808.1| 23S rRNA m(2)A-2503 methyltransferase [cyanobacterium UCYN-A] gi|284809730|gb|ADB95427.1| 23S rRNA m(2)A-2503 methyltransferase [cyanobacterium UCYN-A] Length = 341 Score = 196 bits (498), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 128/365 (35%), Positives = 198/365 (54%), Gaps = 31/365 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 LK++ L+G EEL + + G P R Q+ +W+Y +GI+ + +S + R Sbjct: 3 LKQDILLGKSIEELTNWVEERGQPN----YRGKQLHQWLYHKGIKSLEEVSVFPKNWRKE 58 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + + + I ++ D TRK+LL I IETV IP R T+CVSSQVG Sbjct: 59 IAD-YPVGRSSINQLIVAPDKTRKYLLNLQDGLI-----IETVGIPTSKRLTVCVSSQVG 112 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG RNLT EI+ Q+L + ED + +++S++V Sbjct: 113 CPMKCDFCATGKGDFKRNLTCAEIIDQILTVQ---------EDFQ--------QRVSHVV 155 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242 MGMGEPL N + K++ I + +G+ +R +T+ST G I ++ + A+S Sbjct: 156 FMGMGEPLLNIKEIIKAIKIINQDIGIG--QRSLTISTVGIPEKIIEFANHKLQITFAVS 213 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA + LR L+P ++ Y L LI+ C+ Y ++ RR+TFEY++L+ +NDS A+ L Sbjct: 214 LHASNQILREKLIPTSKFYTLSSLINDCKKYVEITK-RRLTFEYILLEEVNDSLEQAVEL 272 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K+LKG +NLIP+NP +Y S + I F +++ G ++ IR RGL+ AAC Sbjct: 273 AKLLKGFQNHVNLIPYNPIEEVKYKRSSPQRIKAFCYQLEKYGITTSIRYSRGLETHAAC 332 Query: 363 GQLKS 367 GQL++ Sbjct: 333 GQLRA 337 >gi|229491476|ref|ZP_04385300.1| radical SAM enzyme, Cfr family [Rhodococcus erythropolis SK121] gi|229321761|gb|EEN87558.1| radical SAM enzyme, Cfr family [Rhodococcus erythropolis SK121] Length = 369 Score = 196 bits (498), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 130/364 (35%), Positives = 195/364 (53%), Gaps = 36/364 (9%) Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75 E +EA+ ++G+P R Q+ + Y R D + M+D+ VR + + ++P + Sbjct: 28 ERKEAVKELGLPA----FRADQLARQYYARLEADPEKMTDLPASVREKVGES---LFPTL 80 Query: 76 VD--EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131 + + ++CD TRK L + + +E+V + R TLC+SSQ GC + C FC Sbjct: 81 LTPIKHLACDSGDTRKTLWKAHDGTL-----LESVLMRYPDRATLCISSQAGCGMACPFC 135 Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191 TG L RNL+ EI+ QV A + + D G V GR +SN+V MGMGEPL Sbjct: 136 ATGQGGLDRNLSTAEIVDQVREAAAAMRD--------GEVAGGPGR-LSNVVFMGMGEPL 186 Query: 192 CNFDN----VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 N+ V++ S A D +GL S+R +T+ST G P I ++ +E + V LA+SLH Sbjct: 187 ANYKRVVAAVRRITSPAPDGLGL--SQRSVTVSTVGLAPAIRKLADEGLSVTLAVSLHTP 244 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++LR+ LVP+N ++ + ++ A R+Y RR++ EY M+K +ND P A L K L Sbjct: 245 DDELRDTLVPVNNRWSVSEVLQAARYYAD-KTGRRVSIEYAMIKNVNDQPWRADMLGKKL 303 Query: 307 K---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K G +NLIP NP PG E+ S + F + G S +R RG +I AACG Sbjct: 304 KKALGGLVHVNLIPLNPTPGSEWDASPKDVEREFVRRVIAQGVSCTVRDTRGQEIAAACG 363 Query: 364 QLKS 367 QL + Sbjct: 364 QLAA 367 >gi|139439867|ref|ZP_01773232.1| Hypothetical protein COLAER_02266 [Collinsella aerofaciens ATCC 25986] gi|133774795|gb|EBA38615.1| Hypothetical protein COLAER_02266 [Collinsella aerofaciens ATCC 25986] Length = 350 Score = 196 bits (498), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 118/367 (32%), Positives = 191/367 (52%), Gaps = 28/367 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K + + + + ++ E + ++G P R Q+ +W++ + + F M+++ + R L Sbjct: 6 KSQDIRDLSQNDIRELVAELGQPA----FRAKQLIEWVFEKNVCSFDDMTNLPKAFREQL 61 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F+ P + +++S DG+RK+LL + V +ETV +P +++ ++CVS+Q GC Sbjct: 62 KEAFAFDTPTELTKQVSKDGSRKYLLEY-----HDGVSVETVGMPRRNKLSVCVSTQAGC 116 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC TG L R+LTA+EI+ QVL + DF G + +++V Sbjct: 117 GMGCAFCATGLNGLKRSLTAQEIVDQVL---HVSNDF--------------GERATSVVF 159 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243 MG GEP N+D V K+L I +D G+ R +T+STSG +P I + + LA+SL Sbjct: 160 MGQGEPFANYDEVLKALRILNDPDGIGIGARHLTVSTSGVIPGIRKFADIPEQFTLAVSL 219 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ RN L+P +KY L L +A + Y RR T+EY M++G+ND+ + L Sbjct: 220 HSAIQSTRNKLMPGVKKYTLFRLHEALQLYTE-KTGRRPTYEYAMIEGVNDTNPEMQALC 278 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +G +NLI N G S + ++ G + IR RG DI AACG Sbjct: 279 DFCEGTLCHVNLIQLNDIEGSPLKPSPIHKVEDLQRRLESRGIETTIRNSRGNDIDAACG 338 Query: 364 QLKSLSK 370 QLK K Sbjct: 339 QLKQRFK 345 >gi|325673450|ref|ZP_08153141.1| cfr family radical SAM enzyme [Rhodococcus equi ATCC 33707] gi|325555471|gb|EGD25142.1| cfr family radical SAM enzyme [Rhodococcus equi ATCC 33707] Length = 369 Score = 196 bits (498), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 132/369 (35%), Positives = 199/369 (53%), Gaps = 32/369 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L + +E +EA+ ++G+P R Q+ + Y R D M+D+ +R + Sbjct: 21 LADLDADERKEAVKELGLPG----FRADQLARQYYGRLEADADKMTDLPAGMREKVG--- 73 Query: 69 SIIYPEIVD--EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + ++P ++D + ++CD TRK L + + +E+V + R TLC+SSQ GC Sbjct: 74 AALFPRLLDVVKHVACDAGQTRKTLWKANDGTL-----LESVLMRYPDRATLCISSQAGC 128 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EI+ QV A + L D G V GR +SNIV Sbjct: 129 GMACPFCATGQGGLDRNLSTAEIVDQVRAAAAALRD--------GEVEGGPGR-LSNIVF 179 Query: 185 MGMGEPLCNFDNVKKSL-SIASDSM-GLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAI 241 MGMGEPL N+ V ++ I S S GL S+R +T+ST G P I ++ EE+ V LA+ Sbjct: 180 MGMGEPLANYKRVVAAVRRITSPSPDGLGISQRAVTVSTVGLAPAIRKLADEEMSVRLAV 239 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH ++LR+ LVP+N ++ + ++DA R+Y S RR++ EY +++ +ND P A Sbjct: 240 SLHTPDDELRDTLVPVNNRWAVAEVLDAARYYADKSG-RRVSIEYALIRDVNDQPWRADM 298 Query: 302 LIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 L K L G +NLIP NP PG ++ S + F ++ G S +R RG +I Sbjct: 299 LGKKLHKALGPLVHVNLIPLNPTPGSKWDASPKPVEREFVRRVQAQGVSCTVRDTRGQEI 358 Query: 359 LAACGQLKS 367 AACGQL + Sbjct: 359 AAACGQLAA 367 >gi|317968945|ref|ZP_07970335.1| ribosomal RNA large subunit methyltransferase N [Synechococcus sp. CB0205] Length = 365 Score = 196 bits (497), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 127/371 (34%), Positives = 190/371 (51%), Gaps = 42/371 (11%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQH 67 L+GM LE+ + G R Q+ W+Y +G R +S + + R L Q Sbjct: 14 LLGMGLSALEQWAKQHG----QAAFRGRQLHDWLYAKGARSLDQVSVLPKAFREELAAQP 69 Query: 68 FSIIYPEI-----VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + + + + I+ DGT K LL + IETV IP + R T+CVSSQV Sbjct: 70 PAAAFDWMGRSRELHRSIASDGTTKLLL-----GTHDQLSIETVGIPAEGRLTVCVSSQV 124 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L R+L EI+ QVL R ++ P S++ Sbjct: 125 GCPMACRFCATGKGGLQRSLAVHEIVDQVLSVREVMDQRP-----------------SHV 167 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF---VPNIARVG-EEIG-- 236 V MGMGEPL N ++V ++ +G++ +R+IT+ST G +P +A + E +G Sbjct: 168 VFMGMGEPLLNVESVLSAIDCLCTDLGMA--QRQITVSTVGVPRTLPRLAELALERLGRA 225 Query: 237 -VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 LA+SLHA LR L+P YP+E L++ CR Y ++ RR++FEY++L G+ND Sbjct: 226 QFTLAVSLHAPDQRLREELIPTAHAYPIEALLEDCRRYVEITG-RRVSFEYILLGGLNDQ 284 Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 PR A L ++L+G + +NLIP+NP E+ + + F + + +R RG Sbjct: 285 PRHAAALAQLLRGFQSHVNLIPYNPIQEEEFQRPTPQAVEAFRRALMDRHVAVSVRASRG 344 Query: 356 LDILAACGQLK 366 LD AACGQL+ Sbjct: 345 LDADAACGQLR 355 >gi|110597428|ref|ZP_01385715.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031] gi|110340972|gb|EAT59443.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031] Length = 362 Score = 196 bits (497), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 128/368 (34%), Positives = 195/368 (52%), Gaps = 30/368 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 ++I + EL+ A+ + P R +QI +W++ + F+ M+ +S+ +R L + Sbjct: 10 NIIDLSFPELQHAIASLDEPS----FRAAQIHQWLFSHQAKSFEEMTTLSRTLRQKLAET 65 Query: 68 FSIIYPEIVD-----EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 FSI + ++VD E+ + T K LL+ P + IETV IP ++R T C+SSQ Sbjct: 66 FSISHLQLVDHLESTEESGDNLTEKILLKLPDNEL-----IETVLIPAENRLTACLSSQA 120 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+ C+FC TG L RNLTA EI QV +++ M P +KI+NI Sbjct: 121 GCAFQCTFCATGKMGLHRNLTAGEIAGQVYALNAIV----------SMRKPD--KKITNI 168 Query: 183 VMMGMGEPLCNFDNVKKSL-SIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240 V MGMGEPL N+DN+ +S+ ++ + + ++ S+++IT+ST G +P I ++G + LA Sbjct: 169 VFMGMGEPLMNYDNILESIETLTTKNYNVTLSQKKITISTVGVIPQIRKLGASGLKTKLA 228 Query: 241 ISLHAVSNDLRNILVPINRK-YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 +SLHA R L+P+ K YPL L A Y + A +T Y++ KGINDS DA Sbjct: 229 VSLHAAEQQKRESLMPVAAKLYPLNELGKALAGYSS-ATAMPVTIVYMLQKGINDSLEDA 287 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L + G KINLI +N + + F + + SG +R G I Sbjct: 288 KLLARFAHGFLCKINLIDYNSIINIRFKPVNSSSREVFQQYLIDSGLHVTVRKSYGTTIN 347 Query: 360 AACGQLKS 367 AACGQL + Sbjct: 348 AACGQLAT 355 >gi|312139245|ref|YP_004006581.1| radical sam protein [Rhodococcus equi 103S] gi|311888584|emb|CBH47896.1| radical SAM protein [Rhodococcus equi 103S] Length = 369 Score = 196 bits (497), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 132/369 (35%), Positives = 199/369 (53%), Gaps = 32/369 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L + +E +EA+ ++G+P R Q+ + Y R D M+D+ +R + Sbjct: 21 LADLDADERKEAVKELGLPG----FRADQLARQYYGRLEADADKMTDLPAGMREKVG--- 73 Query: 69 SIIYPEIVD--EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + ++P ++D + ++CD TRK L + + +E+V + R TLC+SSQ GC Sbjct: 74 AALFPRLLDVVKHVACDAGQTRKTLWKANDGTL-----LESVLMRYPDRATLCISSQAGC 128 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EI+ QV A + L D G V GR +SNIV Sbjct: 129 GMACPFCATGQGGLDRNLSTAEIVDQVRAAAAALRD--------GEVEGGPGR-LSNIVF 179 Query: 185 MGMGEPLCNFDNVKKSL-SIASDSM-GLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAI 241 MGMGEPL N+ V ++ I S S GL S+R +T+ST G P I ++ EE+ V LA+ Sbjct: 180 MGMGEPLANYKRVVAAVRRITSPSPDGLGISQRAVTVSTVGLAPAIRKLADEEMSVRLAV 239 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH ++LR+ LVP+N ++ + ++DA R+Y S RR++ EY +++ +ND P A Sbjct: 240 SLHTPDDELRDTLVPVNNRWSVAEVLDAARYYADKSG-RRVSIEYALIRDVNDQPWRADM 298 Query: 302 LIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 L K L G +NLIP NP PG ++ S + F ++ G S +R RG +I Sbjct: 299 LGKKLHKALGPLVHVNLIPLNPTPGSKWDASPKPVEREFVRRVQAQGVSCTVRDTRGQEI 358 Query: 359 LAACGQLKS 367 AACGQL + Sbjct: 359 AAACGQLAA 367 >gi|226306037|ref|YP_002765997.1| rRNA methyltransferase [Rhodococcus erythropolis PR4] gi|259491995|sp|C0ZY23|RLMN_RHOE4 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|226185154|dbj|BAH33258.1| putative rRNA methyltransferase [Rhodococcus erythropolis PR4] Length = 369 Score = 196 bits (497), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 130/364 (35%), Positives = 195/364 (53%), Gaps = 36/364 (9%) Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75 E +EA+ ++G+P R Q+ + Y R D + M+D+ VR + + ++P + Sbjct: 28 ERKEAVKELGLPA----FRADQLARQYYARLEADPEKMTDLPASVREKVGES---LFPTL 80 Query: 76 VD--EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131 + + ++CD TRK L + + +E+V + R TLC+SSQ GC + C FC Sbjct: 81 LTPIKHLACDSGDTRKTLWKAHDGTL-----LESVLMRYPDRATLCISSQAGCGMACPFC 135 Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191 TG L RNL+ EI+ QV A + + D G V GR +SN+V MGMGEPL Sbjct: 136 ATGQGGLDRNLSTAEIVDQVREAAAAMRD--------GDVAGGPGR-LSNVVFMGMGEPL 186 Query: 192 CNFDN----VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 N+ V++ S A D +GL S+R +T+ST G P I ++ +E + V LA+SLH Sbjct: 187 ANYKRVVAAVRRITSPAPDGLGL--SQRSVTVSTVGLAPAIRKLADEGLSVTLAVSLHTP 244 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++LR+ LVP+N ++ + ++ A R+Y RR++ EY M+K +ND P A L K L Sbjct: 245 DDELRDTLVPVNNRWSVSEVLQAARYYAD-KTGRRVSIEYAMIKNVNDQPWRADMLGKKL 303 Query: 307 K---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K G +NLIP NP PG E+ S + F + G S +R RG +I AACG Sbjct: 304 KKALGGLVHVNLIPLNPTPGSEWDASPKDVEREFVRRVIAQGVSCTVRDTRGQEIAAACG 363 Query: 364 QLKS 367 QL + Sbjct: 364 QLAA 367 >gi|212634296|ref|YP_002310821.1| hypothetical protein swp_1448 [Shewanella piezotolerans WP3] gi|212555780|gb|ACJ28234.1| Conserved hypothetical protein [Shewanella piezotolerans WP3] Length = 242 Score = 195 bits (496), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 106/233 (45%), Positives = 143/233 (61%), Gaps = 6/233 (2%) Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216 ++G D G V + R I+N+VMMGMGEPL N NV ++ I D G S SKRR Sbjct: 6 IVGQIWRVADFIGFVKDTGERPITNVVMMGMGEPLLNLKNVIPAMDIMLDDFGFSLSKRR 65 Query: 217 ITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276 +T+STSG VP + +G+ + V LA+S+HA +++LR++LVP+N+KYPLE + R Y Sbjct: 66 VTVSTSGVVPALDILGDALDVALAVSIHAPNDELRDVLVPVNKKYPLEDFLAGIRRYIAK 125 Query: 277 SNAR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDI 334 SNA R+T EYVML INDS A L K++K P K+NLIPFNP+PG Y S I Sbjct: 126 SNANRGRVTVEYVMLDHINDSTDQAHELAKLMKDTPCKVNLIPFNPYPGSPYGRSSNSRI 185 Query: 335 VTFSECIKRSGYSSPIRTPRGLDILAACGQL----KSLSKRIPKVPRQEMQIT 383 FS+ + G + +R RG DI AACGQL + +KR+ K Q+ QI+ Sbjct: 186 DRFSKVLMEYGLTVIVRKTRGDDIDAACGQLAGDIRDRTKRLAKKQMQQNQIS 238 >gi|41409041|ref|NP_961877.1| hypothetical protein MAP2943c [Mycobacterium avium subsp. paratuberculosis K-10] gi|81571119|sp|Q73VR8|RLMN_MYCPA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|41397400|gb|AAS05260.1| hypothetical protein MAP_2943c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 364 Score = 195 bits (496), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 124/357 (34%), Positives = 191/357 (53%), Gaps = 34/357 (9%) Query: 20 ALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-NQHFSIIYPEIVDE 78 A+ ++G+P R Q+ Y R I D + M+D+ +R + + F I+ Sbjct: 30 AVAELGLPA----FRAKQLAHQYYGRLIADPRQMTDLPAGLRDAIADTMFPILL--TAAS 83 Query: 79 KISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136 +++CD TRK L R + G V +E+V + R T+C+SSQ GC + C FC TG Sbjct: 84 EVTCDAGQTRKTLWR----ALDG-VTVESVLMRYPHRNTVCISSQAGCGMACPFCATGQG 138 Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196 L RNL+ EIL QV + L D G ++SN+V MGMGEPL N+ Sbjct: 139 GLSRNLSTAEILEQVRAGAAALRD-------------DFGDRLSNVVFMGMGEPLANYAR 185 Query: 197 VKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNI 253 V ++ +A+ G S R +T+ST G P I ++ +E +GV LA+SLHA ++LR+ Sbjct: 186 VVAAVRRIVAAPPQGFGISARSVTVSTVGLAPAIRKLADERLGVTLALSLHAPDDELRDT 245 Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIP 310 LVP+N ++ + +DA R+Y ++ RR++ EY +++ +ND P A L + L G Sbjct: 246 LVPVNNRWKIAEALDAARYYADVTG-RRVSVEYALIRDVNDQPWRADLLGRRLHRALGPL 304 Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 +NLIP NP PG ++ S + F ++ +G S +R RG +I AACGQL + Sbjct: 305 VHVNLIPLNPTPGSQWDASPKPVEREFVRRVRAAGVSCTVRDTRGREISAACGQLAA 361 >gi|254819036|ref|ZP_05224037.1| hypothetical protein MintA_03871 [Mycobacterium intracellulare ATCC 13950] Length = 367 Score = 195 bits (496), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 128/355 (36%), Positives = 194/355 (54%), Gaps = 31/355 (8%) Query: 20 ALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-NQHFSIIYPEIVDE 78 A+ ++G+P R Q+ Y R I D + M+D+ +R + + F I+ + Sbjct: 30 AVAELGLPA----FRAKQLAHQYYGRLIADPRQMTDLPAGLRDAIADTMFPILLTAV--S 83 Query: 79 KISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136 +++CD TRK L R + G V +E+V + R T+C+SSQ GC + C FC TG Sbjct: 84 EVACDAGETRKTLWR----ALDG-VTVESVLMRYPQRNTVCISSQAGCGMACPFCATGQG 138 Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196 L RNL+ EIL QV A ++L D G PS +++SN+V MGMGEPL N+ Sbjct: 139 GLSRNLSTAEILEQVRAAAAVLRDDFGP--------PS--QRLSNVVFMGMGEPLANYAR 188 Query: 197 VKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNI 253 V ++ IA+ G S R +T+ST G P I ++ +E + V LA+SLHA ++LR+ Sbjct: 189 VVAAVRRIIAAPPHGFGISARSVTVSTVGLAPAIRKLADEGLAVTLALSLHAPDDELRDT 248 Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIP 310 LVP+N ++ + +DA R+Y ++ RR++ EY +++ +ND P A L + L G Sbjct: 249 LVPVNNRWKIAEALDAARYYADVTG-RRVSVEYALIRDVNDQPWRADLLGQRLHRALGPL 307 Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +NLIP NP PG E+ S + F ++ G S +R RG +I AACGQL Sbjct: 308 VHVNLIPLNPTPGSEWDASPKAVEREFVRRVRAKGVSCTVRDTRGREISAACGQL 362 >gi|108798974|ref|YP_639171.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium sp. MCS] gi|119868089|ref|YP_938041.1| radical SAM protein [Mycobacterium sp. KMS] gi|126434574|ref|YP_001070265.1| radical SAM protein [Mycobacterium sp. JLS] gi|122977121|sp|Q1BAG9|RLMN_MYCSS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829816|sp|A3PXZ7|RLMN_MYCSJ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829817|sp|A1UEJ3|RLMN_MYCSK RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|108769393|gb|ABG08115.1| 23S rRNA m(2)A-2503 methyltransferase [Mycobacterium sp. MCS] gi|119694178|gb|ABL91251.1| 23S rRNA m(2)A-2503 methyltransferase [Mycobacterium sp. KMS] gi|126234374|gb|ABN97774.1| 23S rRNA m(2)A-2503 methyltransferase [Mycobacterium sp. JLS] Length = 374 Score = 195 bits (496), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 128/355 (36%), Positives = 189/355 (53%), Gaps = 27/355 (7%) Query: 23 KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD--EKI 80 ++G+P R Q+ Y R D Q M+D+ VR Q ++P+++ +I Sbjct: 35 ELGLPA----FRAKQLATQYYGRLTADPQQMTDLPAAVRE---QVAEALFPDLLTAVREI 87 Query: 81 SCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKL 138 D TRK L R + G E+V + R T+C+SSQ GC + C FC TG L Sbjct: 88 ETDAGETRKVLWR----AVDG-TTFESVLMRYSDRNTVCISSQAGCGMACPFCATGQGGL 142 Query: 139 VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVK 198 RNL+ EIL QV A L D D EG+ + G ++SNIV MGMGEPL N++ V Sbjct: 143 QRNLSTAEILEQVRAAAVELRD----RDGEGIAPAARGGRLSNIVFMGMGEPLANYNRVI 198 Query: 199 KSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILV 255 ++ +A G S R +T+ST G P I ++ +E + V LA+SLHA ++LR+ LV Sbjct: 199 AAVRRIVAPPPDGFGISARSVTVSTVGLAPAIRKLADERLNVTLALSLHAPDDELRDTLV 258 Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA---K 312 P+N ++ + +DA R+Y ++ RR++ EY +++ +ND P A L K L G Sbjct: 259 PVNNRWKVSEALDAARYYADVTG-RRVSIEYALIRDVNDQPWRADLLGKRLHGALGPLVH 317 Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 +N+IP NP PG E+ S + F ++ G S +R RG +I AACGQL + Sbjct: 318 VNVIPLNPTPGSEWDASPKPAEREFVRRVRERGVSCTVRDTRGREIAAACGQLAA 372 >gi|315445031|ref|YP_004077910.1| 23S rRNA m(2)A-2503 methyltransferase [Mycobacterium sp. Spyr1] gi|315263334|gb|ADU00076.1| 23S rRNA m(2)A-2503 methyltransferase [Mycobacterium sp. Spyr1] Length = 365 Score = 195 bits (496), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 127/362 (35%), Positives = 190/362 (52%), Gaps = 36/362 (9%) Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75 E A+ +G+P R Q+ + R I D M+D+ VR +Q + ++P + Sbjct: 28 ERAAAVADLGLPA----FRGKQLANQYFGRLISDPSQMTDLPAGVR---DQVAAALFPAL 80 Query: 76 VD--EKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131 ++ +I CD TRK L R + E+V + R T+C+SSQ GC + C FC Sbjct: 81 LETAREIECDRGETRKVLWRAVDKTT-----FESVLMRYPDRNTVCISSQAGCGMACPFC 135 Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191 TG L RNL+ EIL QV A + L D G ++SNIV MGMGEPL Sbjct: 136 ATGQGGLKRNLSTAEILEQVRFASAELRDRDGG-------------RLSNIVFMGMGEPL 182 Query: 192 CNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248 N++ V ++ AS G S R +T+ST G P I ++ +E + V LA+SLH + Sbjct: 183 ANYNRVVAAVRRITASSPHGFGISARSVTVSTVGLAPAIRKLADEKLNVTLAVSLHTPDD 242 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK- 307 +LR+ LVP+N ++ ++ ++DA R+Y L+ RR++ EY +++ +ND P A L + L Sbjct: 243 ELRDTLVPVNNRWKVDEVLDAARYYADLTG-RRVSIEYALIRDVNDQPWRADLLGRKLHA 301 Query: 308 --GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 G +NLIP NP PG E+ S + F ++ G S +R RG +I AACGQL Sbjct: 302 KLGPLVHVNLIPLNPTPGSEWDASPKPVEREFVRRVRAKGVSCTVRDTRGREIAAACGQL 361 Query: 366 KS 367 + Sbjct: 362 AA 363 >gi|149371549|ref|ZP_01890965.1| hypothetical protein SCB49_09100 [unidentified eubacterium SCB49] gi|149355176|gb|EDM43736.1| hypothetical protein SCB49_09100 [unidentified eubacterium SCB49] Length = 346 Score = 195 bits (496), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 125/363 (34%), Positives = 196/363 (53%), Gaps = 26/363 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K+ + + +EEL + + +G R +Q+++W++ +G F+ M+++S E R L Sbjct: 4 EKKDIRALTKEELRDFFVALGDKA----FRGNQVYEWLWSKGAHTFEAMTNLSLETRSHL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +F I + ++ + S DGT K ++ I +E+V IP KSR T CVSSQVGC Sbjct: 60 EANFVINHIKVDSIQRSNDGTIKNAVKLHDGLI-----VESVLIPTKSRTTACVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 SL C FC T K +RNL +EI QV+ D E + ++ +SNIV Sbjct: 115 SLDCLFCATSRLKRMRNLNPDEIYDQVVAI-----------DKESRLYHNI--PLSNIVY 161 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM--LAIS 242 MGMGEPL N+ NV S+ + GL S +RI +STSG VP + + + GV LA+S Sbjct: 162 MGMGEPLMNYKNVLASIEKITSPEGLGMSPKRIVVSTSG-VPKMIKKMADDGVRFNLAVS 220 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LH+ + R ++P + + L+ L DA ++ +N R IT+EYV+ K IND D L Sbjct: 221 LHSAIQETREEIMPFAKSFTLDDLRDALIYWYEKTN-RAITYEYVVWKDINDKKVDIDAL 279 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++ +P K+NLI +NP ++ + + + ++++ +R RG DI AAC Sbjct: 280 VRFCAHVPCKVNLIEYNPIDDGKFQQAQDAAVDAYISSLEKARVPVTVRRSRGKDIDAAC 339 Query: 363 GQL 365 GQL Sbjct: 340 GQL 342 >gi|269977915|ref|ZP_06184869.1| radical SAM enzyme, Cfr family [Mobiluncus mulieris 28-1] gi|269933881|gb|EEZ90461.1| radical SAM enzyme, Cfr family [Mobiluncus mulieris 28-1] Length = 401 Score = 195 bits (496), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 128/350 (36%), Positives = 183/350 (52%), Gaps = 23/350 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI + + R D Q M+D++ R L Q + P+++ ++ + W + Sbjct: 53 FRADQIARHYFGRFEADPQLMTDLNARDRELAAQ----LLPQLITPVVTKTADQDWTQKT 108 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 R G E+E+V + R TLCVSSQVGC + C FC TG L RNL+A EIL QV Sbjct: 109 LWRLFDG-AEVESVLMRYPKRVTLCVSSQVGCGMGCPFCATGQLGLARNLSAGEILEQVR 167 Query: 153 L-ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMG 209 AR+ G ++ ++SNIV MGMGEPL N+ + SL A G Sbjct: 168 FSARAAATGALGGQET----------RLSNIVFMGMGEPLSNYRALLTSLRTITAPVPQG 217 Query: 210 LSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S R + +ST G VP I R+ E I V LA+SLHA ++LR+ L+P+NR Y + L+D Sbjct: 218 FGISARNLVVSTVGMVPGIRRLASEGIPVTLAVSLHAPDDELRDALIPMNRHYKVGQLLD 277 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIPAKINLIPFNPWPGCE 325 A Y ++ RR++ EY +++ +ND P A L L A +N IP NP PG Sbjct: 278 AAHEYFEIT-GRRVSIEYALIRDMNDHPWRAQLLADELNKRGKTWAHVNPIPLNPTPGSI 336 Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKV 375 + S + + F+ +++SG S+ +R RG DI ACGQL + SK K Sbjct: 337 WTASLPRVMEEFTSILRQSGISTTLRDTRGSDIDGACGQLATASKNHKKT 386 >gi|326382905|ref|ZP_08204595.1| ribosomal RNA large subunit methyltransferase N [Gordonia neofelifaecis NRRL B-59395] gi|326198495|gb|EGD55679.1| ribosomal RNA large subunit methyltransferase N [Gordonia neofelifaecis NRRL B-59395] Length = 371 Score = 195 bits (496), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 131/366 (35%), Positives = 192/366 (52%), Gaps = 41/366 (11%) Query: 19 EALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD- 77 +A+ +G+P + R +Q+ K Y R D M+D+ R + + ++P ++ Sbjct: 33 DAVADLGLP----KFRANQLAKQYYGRLNADVDEMTDLPAGKRDAVGEK---LFPTLMTP 85 Query: 78 -EKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134 ISCD TRK L R + +E+V + R TLC+SSQ GC + C FC TG Sbjct: 86 VRHISCDDDSTRKTLWRLHDGTL-----LESVLMRYPERNTLCISSQAGCGMACPFCATG 140 Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR--KISNIVMMGMGEPLC 192 L RNL+ EI+ QV A L D VG ++SNIV MGMGEPL Sbjct: 141 QGGLDRNLSTAEIVDQVRAAARALRDG------------EVGEPGRLSNIVFMGMGEPLA 188 Query: 193 NF----DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVS 247 N+ D V+K S + D G+ S R +T+ST G P I R+ +E + V LA+SLH Sbjct: 189 NYKRVVDAVRKITSPSPDGFGI--SARSVTVSTVGLAPAIRRLADEGLSVTLAVSLHTPD 246 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 ++LR+ LVP+N ++ + +++A R+Y S RR++ EY +++ +ND P A L K L+ Sbjct: 247 DELRDTLVPVNNRWSVAEVLEAARYYAD-STGRRVSIEYALIRDVNDQPWRADLLGKKLR 305 Query: 308 ---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 G +NLIP NP PG E+ S + F ++ G S +R RG +I AACGQ Sbjct: 306 QALGSLVHVNLIPLNPTPGSEWDASPKPVEAEFVRRVREHGVSCTVRDTRGQEIAAACGQ 365 Query: 365 LKSLSK 370 L + K Sbjct: 366 LAAEEK 371 >gi|54026096|ref|YP_120338.1| ribosomal RNA large subunit methyltransferase N [Nocardia farcinica IFM 10152] gi|81373742|sp|Q5YS67|RLMN_NOCFA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|54017604|dbj|BAD58974.1| hypothetical protein [Nocardia farcinica IFM 10152] Length = 369 Score = 195 bits (496), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 129/363 (35%), Positives = 195/363 (53%), Gaps = 32/363 (8%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 E+ A+ ++G+P + R QI + Y R D M+D+ VR Q + ++P Sbjct: 27 EQRRAAVAELGLP----KFRADQIARQYYGRLEADPARMTDLPAPVRE---QIGAALFPR 79 Query: 75 IVD--EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130 ++D + ++CD TRK L R G +E+V + R TLC+SSQ GC + C F Sbjct: 80 LLDVVKHVACDDGRTRKTLWR-----AGDGTLLESVLMRYADRNTLCISSQAGCGMACPF 134 Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 C TG L RNL+ EI+ QV A + L D G V GR +SNIV MGMGEP Sbjct: 135 CATGQGGLNRNLSTAEIVDQVRAAAAALRD--------GAVAGGPGR-LSNIVFMGMGEP 185 Query: 191 LCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVS 247 L N+ V ++ A GL S+R + +ST G P I ++ +E + V LA+SLH Sbjct: 186 LANYKRVVAAVRRITAPAPDGLGISQRNVVVSTVGLAPAIRKLADEGLSVTLAVSLHTPD 245 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL-IKIL 306 ++LR+ LVP+N ++P+ ++DA R+Y + RR++ EY +++ IND P A L K+ Sbjct: 246 DELRDTLVPVNNRWPVAEVLDAARYYAD-TTGRRVSVEYALIRDINDQPWRADMLGAKLH 304 Query: 307 KGIPAK--INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 K + ++ +N+IP NP PG ++ S + F + G +R RG +I AACGQ Sbjct: 305 KALGSRVHVNVIPLNPTPGSKWDASPKPVEREFVRRVNEQGVPCTVRDTRGQEIAAACGQ 364 Query: 365 LKS 367 L + Sbjct: 365 LAA 367 >gi|269792997|ref|YP_003317901.1| radical SAM enzyme, Cfr family [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100632|gb|ACZ19619.1| radical SAM enzyme, Cfr family [Thermanaerovibrio acidaminovorans DSM 6589] Length = 462 Score = 195 bits (496), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 124/339 (36%), Positives = 180/339 (53%), Gaps = 31/339 (9%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISC-DGTRKWLL 90 R R Q+ W Y R + +FQ MSD+S E+R+ L+ F + P+++ + S DGT+K+L Sbjct: 25 RFRADQVCGWFYRRHVFEFQLMSDLSLELRNRLDGAFRVGLPKMLGMRASGRDGTKKFLF 84 Query: 91 RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150 F +E+V I R T CVS+QVGC L C FC TG RN+T E++ Q Sbjct: 85 DFDG------SSVESVAIWHPGRITACVSTQVGCPLGCPFCATGQSGFERNMTVGEMVGQ 138 Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210 L + LG+ I N+V MGMGEP+ N+ N+ ++ + Sbjct: 139 FLAMEARLGE------------------IKNLVFMGMGEPMLNYHNLIGAIRNLNHPKMR 180 Query: 211 SFSKRRITLSTSGFVP---NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267 R IT+STSG +P N+AR E +GV LA+SLHA +++LR+ LVPIN +YPL+ L Sbjct: 181 GLGIRHITVSTSGIIPGILNLAR--EGLGVRLAVSLHAPNDELRDQLVPINAQYPLKELK 238 Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL 327 A Y ++ RIT EY + +NDS A L + LKG+ A +NLIP + + Sbjct: 239 RALMEYQEIT-GDRITIEYSLFDQVNDSVPMARQLGEYLKGLSAFVNLIPGSCVGDQRFR 297 Query: 328 CSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 S + F + + GY +R +G D+ ACGQL+ Sbjct: 298 PSPPFRVRAFGDLLTAMGYPVAMRQSKGSDVGGACGQLR 336 >gi|55297177|dbj|BAD68852.1| florfenicol resistance protein-like [Oryza sativa Japonica Group] Length = 247 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 102/240 (42%), Positives = 143/240 (59%), Gaps = 14/240 (5%) Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC+TG L ++L+ EI+ Q + AR L D G I+N+V M Sbjct: 1 MNCQFCFTGRMGLRKHLSTAEIVEQAVFARRLFSDEFG--------------SITNVVFM 46 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N DNV K+ +I D GL FS R++T+STSG VP I R +E LA+SL+A Sbjct: 47 GMGEPLHNIDNVLKASAIMVDEQGLQFSPRKVTVSTSGLVPQIKRFLQESNCALAVSLNA 106 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++RN ++PINRKY L +L+ R L ++ FEYVML G+NDS DA L+ + Sbjct: 107 TTDEVRNWIMPINRKYNLSLLLGTLREEIRLKKKYKVFFEYVMLAGVNDSVDDAKRLVDL 166 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 ++GIP KINLI FNP G ++ + + I+ F + + G +R RG D +AACGQL Sbjct: 167 VRGIPCKINLISFNPHSGSQFKPTPDEKIIEFRNILIQDGLVVFVRLSRGDDQMAACGQL 226 >gi|254776158|ref|ZP_05217674.1| hypothetical protein MaviaA2_16010 [Mycobacterium avium subsp. avium ATCC 25291] Length = 364 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 124/355 (34%), Positives = 190/355 (53%), Gaps = 34/355 (9%) Query: 20 ALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-NQHFSIIYPEIVDE 78 A+ ++G+P R Q+ Y R I D + M+D+ +R + + F I+ Sbjct: 30 AVAELGLPA----FRAKQLAHQYYGRLIADPRQMTDLPAGLRDAIADTMFPILL--TAAS 83 Query: 79 KISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136 +++CD TRK L R + G V +E+V + R T+C+SSQ GC + C FC TG Sbjct: 84 EVTCDAGQTRKTLWR----ALDG-VTVESVLMRYPQRNTVCISSQAGCGMACPFCATGQG 138 Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196 L RNL+ EIL QV + L D G ++SN+V MGMGEPL N+ Sbjct: 139 GLSRNLSTAEILEQVRAGAAALRD-------------DFGDRLSNVVFMGMGEPLANYAR 185 Query: 197 VKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNI 253 V ++ +A+ G S R +T+ST G P I ++ +E +GV LA+SLHA ++LR+ Sbjct: 186 VVAAVRRIVAAPPQGFGISARSVTVSTVGLAPAIRKLADERLGVTLALSLHAPDDELRDT 245 Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIP 310 LVP+N ++ + +DA R+Y ++ RR++ EY +++ +ND P A L + L G Sbjct: 246 LVPVNNRWKIAEALDAARYYADVTG-RRVSVEYALIRDVNDQPWRADLLGQRLHRALGPL 304 Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +NLIP NP PG ++ S + F ++ +G S +R RG +I AACGQL Sbjct: 305 VHVNLIPLNPTPGSQWDASPKPVEREFVRRVRAAGVSCTVRDTRGREISAACGQL 359 >gi|302334811|ref|YP_003800018.1| 23S rRNA m(2)A-2503 methyltransferase [Olsenella uli DSM 7084] gi|301318651|gb|ADK67138.1| 23S rRNA m(2)A-2503 methyltransferase [Olsenella uli DSM 7084] Length = 359 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 122/371 (32%), Positives = 187/371 (50%), Gaps = 28/371 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 ++ L M +L E L +G P R QI +W++ + + F MS++ + +R L Sbjct: 16 QRRDLRAMSHGQLLELLGDLGQPG----FRAKQIEEWVWEKNVSSFDDMSNLPKSLRAHL 71 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +Q S+ P V + S DG+RK+LLR+ V +E V +P +++ +C S+Q GC Sbjct: 72 SQACSLGGPREVGRQQSSDGSRKYLLRYE-----DGVSVECVGMPTRNKLAVCASTQAGC 126 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +++C+FC TG L R+LTA EI QV+ AR DF +++++V+ Sbjct: 127 AMSCAFCATGAAGLTRSLTAGEIYEQVMHARD---DFNA--------------RVTSVVL 169 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLAISL 243 MG GEP N+D +L + G R +T+ST G +P I R GE LA+SL Sbjct: 170 MGQGEPFMNYDATLGALRRLNSPEGAGIGARHLTVSTCGIIPMIKRFAGEPEQFTLAVSL 229 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ R++L+P RKY L L + Y RR T+EY ++KG+NDS + L Sbjct: 230 HSAVQRTRDMLMPGVRKYSLLHLYEIMEEYVD-KTGRRPTYEYALIKGVNDSEDEMGALC 288 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +G A +NLI N + S + F + G + IR RG DI AACG Sbjct: 289 DFCRGNLAHVNLIRLNDVKDSPFQPSSDRRAEEFVRRLGAVGVDATIRNSRGSDIDAACG 348 Query: 364 QLKSLSKRIPK 374 QL+ +R+ + Sbjct: 349 QLRQEMERLSR 359 >gi|227875938|ref|ZP_03994061.1| possible Fe-S-cluster redox protein [Mobiluncus mulieris ATCC 35243] gi|307700221|ref|ZP_07637262.1| 23S rRNA m2A2503 methyltransferase [Mobiluncus mulieris FB024-16] gi|227843470|gb|EEJ53656.1| possible Fe-S-cluster redox protein [Mobiluncus mulieris ATCC 35243] gi|307614603|gb|EFN93831.1| 23S rRNA m2A2503 methyltransferase [Mobiluncus mulieris FB024-16] Length = 401 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 128/350 (36%), Positives = 182/350 (52%), Gaps = 23/350 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI + + R D Q M+D++ R L Q + P+++ ++ + W + Sbjct: 53 FRADQIARHYFGRFEADPQLMTDLNARDRELAAQ----LLPQLITPVVTKTADQDWTQKT 108 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 R G E+E+V + R TLCVSSQVGC + C FC TG L RNL+A EIL QV Sbjct: 109 LWRLFDG-AEVESVLMRYPKRVTLCVSSQVGCGMGCPFCATGQLGLARNLSAGEILEQVR 167 Query: 153 L-ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMG 209 AR+ G ++ ++SNIV MGMGEPL N+ + SL A G Sbjct: 168 FSARAAATGALGGQET----------RLSNIVFMGMGEPLSNYRALLTSLRTITAPVPQG 217 Query: 210 LSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S R + +ST G VP I R+ E I V LA+SLHA ++LR+ L+P+NR Y + L+D Sbjct: 218 FGISARNLVVSTVGMVPGIRRLASEGIPVTLAVSLHAPDDELRDALIPMNRHYKVGQLLD 277 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIPAKINLIPFNPWPGCE 325 A Y + RR++ EY +++ +ND P A L L A +N IP NP PG Sbjct: 278 AAHEY-FETTGRRVSIEYALIRDMNDHPWRAQLLADELNKRGKTWAHVNPIPLNPTPGSI 336 Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKV 375 + S + + F+ +++SG S+ +R RG DI ACGQL + SK K Sbjct: 337 WTASLPRVMEEFTSILRQSGISTTLRDTRGSDIDGACGQLATASKNHKKT 386 >gi|306819217|ref|ZP_07452928.1| cfr family radical SAM enzyme [Mobiluncus mulieris ATCC 35239] gi|304647999|gb|EFM45313.1| cfr family radical SAM enzyme [Mobiluncus mulieris ATCC 35239] Length = 401 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 128/350 (36%), Positives = 182/350 (52%), Gaps = 23/350 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI + + R D Q M+D++ R L Q + P+++ ++ + W + Sbjct: 53 FRADQIARHYFGRFEADPQLMTDLNARDRELAAQ----LLPQLITPVVTKTADQDWTQKT 108 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 R G E+E+V + R TLCVSSQVGC + C FC TG L RNL+A EIL QV Sbjct: 109 LWRLFDG-AEVESVLMRYPKRVTLCVSSQVGCGMGCPFCATGQLGLARNLSAGEILEQVR 167 Query: 153 L-ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMG 209 AR+ G ++ ++SNIV MGMGEPL N+ + SL A G Sbjct: 168 FSARAAATGALGGQET----------RLSNIVFMGMGEPLSNYRALLTSLRTITAPVPQG 217 Query: 210 LSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S R + +ST G VP I R+ E I V LA+SLHA ++LR+ L+P+NR Y + L+D Sbjct: 218 FGISARNLVVSTVGMVPGILRLASEGIPVTLAVSLHAPDDELRDALIPMNRHYKVGQLLD 277 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIPAKINLIPFNPWPGCE 325 A Y + RR++ EY +++ +ND P A L L A +N IP NP PG Sbjct: 278 AAHEY-FETTGRRVSIEYALIRDMNDHPWRAQLLADELNKRGKTWAHVNPIPLNPTPGSI 336 Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKV 375 + S + + F+ +++SG S+ +R RG DI ACGQL + SK K Sbjct: 337 WTASLPRVMEEFTSILRQSGISTTLRDTRGSDIDGACGQLATASKNHKKT 386 >gi|262202048|ref|YP_003273256.1| radical SAM protein [Gordonia bronchialis DSM 43247] gi|262085395|gb|ACY21363.1| radical SAM enzyme, Cfr family [Gordonia bronchialis DSM 43247] Length = 368 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 131/364 (35%), Positives = 195/364 (53%), Gaps = 45/364 (12%) Query: 20 ALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD-- 77 A+ ++G+P + R +Q+ + Y R D M+D+ R + + ++P ++ Sbjct: 31 AVAELGLP----KFRANQLARQYYARLNGDVAEMTDLPASARDSVG---AALFPPLLTPV 83 Query: 78 EKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135 ISCD TRK L R + +E+V + R TLC+SSQ GC + C FC TG Sbjct: 84 RHISCDDGSTRKTLWRLHDGTL-----LESVLMRYPDRNTLCISSQAGCGMACPFCATGQ 138 Query: 136 QKLVRNLTAEEILLQV-LLARSLL-GDF--PGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191 L RNL+ EI+ QV ARSL G+F PG ++SN+V MGMGEPL Sbjct: 139 GGLDRNLSTAEIVDQVRCAARSLRDGEFGEPG--------------RLSNVVFMGMGEPL 184 Query: 192 CNFDN----VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 N+ V++ S A D GL S R +T+ST G P+I R+ +E + V LA+SLH Sbjct: 185 ANYTRVVSAVRQITSPAPD--GLGISARSVTVSTVGLAPSIRRLADEGLAVTLAVSLHTP 242 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++LR+ LVP+N ++ ++ ++DA R+Y + RR++ EY +++ +ND P A L K L Sbjct: 243 DDELRDTLVPVNNRWSVQEVLDAARYYAD-TTGRRVSIEYALIRDVNDQPWRADMLGKKL 301 Query: 307 K---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 G +NLIP NP PG E+ S + F ++ G S +R RG +I AACG Sbjct: 302 HKALGSRVHVNLIPLNPTPGSEWDASPKPVEREFVRRVREQGVSCTVRDTRGQEIAAACG 361 Query: 364 QLKS 367 QL + Sbjct: 362 QLAA 365 >gi|322435186|ref|YP_004217398.1| radical SAM enzyme, Cfr family [Acidobacterium sp. MP5ACTX9] gi|321162913|gb|ADW68618.1| radical SAM enzyme, Cfr family [Acidobacterium sp. MP5ACTX9] Length = 383 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 125/350 (35%), Positives = 186/350 (53%), Gaps = 37/350 (10%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R Q+ +Y + + + ++ + VR L + + + PE+ S DGT ++L+R Sbjct: 42 FRAKQLIDGLYKQRVGAVEEITTLPIAVRERLAAEGWVVGLPELAQTAKSVDGTERYLVR 101 Query: 92 FPARCIGGPVEIETVYIPEKS--------------RGTLCVSSQVGCSLTCSFCYTGTQK 137 + +ETV++P R T+CVSSQVGC++ C FC T Sbjct: 102 -----LADGETVETVWMPGGDGAELQEGDEGPGYKRATICVSSQVGCAVNCQFCLTAKLG 156 Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197 + RNLTA EI QV + +G+VI G+ N+V MGMGEP N+D+ Sbjct: 157 MRRNLTAGEIAGQVT----------AVLNRQGIVI---GKDRINLVFMGMGEPFLNYDSF 203 Query: 198 KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVP 256 ++ + + MG+ S R+T+STSG P I R E I LA+SL+A ++ +R ++P Sbjct: 204 MDAVRLLVNEMGIPAS--RMTVSTSGIEPAIRRFALEPIRPNLALSLNASNDVVRESIMP 261 Query: 257 INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLI 316 I RK+ +E L+DA + P L +TFEYV+L G+ND P A ++ +LKG+ AK+NLI Sbjct: 262 ITRKWDIEALLDAVKSVP-LRRQEYVTFEYVLLGGVNDQPEHAREVLALLKGMQAKVNLI 320 Query: 317 PFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +NP PG Y Q+ F + + G + R PRG DI AACGQLK Sbjct: 321 VWNPGPGVAYEQPSQEAADAFHKMLVVGGVPAFTRRPRGRDIYAACGQLK 370 >gi|325474464|gb|EGC77651.1| ribosomal RNA large subunit methyltransferase N [Treponema denticola F0402] Length = 347 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 126/368 (34%), Positives = 191/368 (51%), Gaps = 33/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L GM EE++ G+ ++ R QI+ WI G+ F M+++S ++R L Sbjct: 7 KTALSGMFPEEIQSF---CGLKEK---FRAQQIFHWI-ASGVNSFDEMTNLSFDMRSKLK 59 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQVGC 124 FS+ +I + DGT ++ G V IETV + +K+ R T CVS Q GC Sbjct: 60 NDFSLFSTKIKEALKDKDGT----IKLAVELYDGSV-IETVLLTDKAKRKTACVSCQAGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC TG +RNL+A EI+ Q L G + NIV Sbjct: 115 PMKCAFCKTGQIGFLRNLSASEIVEQFLHLEREAGS------------------LDNIVF 156 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MGMGEP+ N + K+++I + G + SKRRIT+STSG I + ++ V LA+SL Sbjct: 157 MGMGEPMLNLPEIDKAINILAHPKGRNLSKRRITISTSGLCNGIYEMADKGPEVRLAVSL 216 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 LR+ L+PIN+ L+ L A +++ SN +R+T E ++KG+N + A +I Sbjct: 217 TTADETLRSELMPINKTNSLDELKQAIKYFNSKSN-KRVTLELALMKGLNTDKKAAQEVI 275 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 + KG+ INLIP+NP G + + ++ TF +K++G + R RG I ACG Sbjct: 276 EFAKGLECFINLIPWNPVEGLNFKTPSETEVRTFETYLKKAGLNISTRQKRGQSIGGACG 335 Query: 364 QLKSLSKR 371 QL S + R Sbjct: 336 QLGSTATR 343 >gi|322806773|emb|CBZ04342.1| ribosomal RNA large subunit methyltransferase N [Clostridium botulinum H04402 065] Length = 272 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 112/284 (39%), Positives = 162/284 (57%), Gaps = 24/284 (8%) Query: 84 GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLT 143 T K+L + I IE+V + K ++CVS+QVGC + C FC + ++RNLT Sbjct: 6 NTYKFLFEYKDGNI-----IESVVMKYKHGNSICVSTQVGCRMGCKFCASTLDGVIRNLT 60 Query: 144 AEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI 203 + EIL Q++ A+ +G +ISN+V+MG GEPL NF+NV K L + Sbjct: 61 SGEILSQIMAAQ-----------------KEIGERISNVVLMGSGEPLDNFENVTKFLDL 103 Query: 204 ASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYP 262 + L+ +R ITLST G VP I + ++ + LAISLH+ + LR ++PI KY Sbjct: 104 VTSDTTLNIGQRHITLSTCGIVPKIKELADKNYNITLAISLHSPEDLLRKEMMPIANKYS 163 Query: 263 LEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP 322 ++ L++AC +Y +N RRITFEY ++KG NDS ++A L +LKG +NLIP N Sbjct: 164 IKELMEACDYYINKTN-RRITFEYALVKGKNDSIKEAKKLSIVLKGKLCHVNLIPVNEIK 222 Query: 323 GCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 Y S K+I +F +K +G + IR G DI AACGQL+ Sbjct: 223 ENSYEKSTLKNIESFGNILKENGIETTIRREMGADINAACGQLR 266 >gi|254382049|ref|ZP_04997411.1| conserved hypothetical protein [Streptomyces sp. Mg1] gi|194340956|gb|EDX21922.1| conserved hypothetical protein [Streptomyces sp. Mg1] Length = 371 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 129/366 (35%), Positives = 186/366 (50%), Gaps = 29/366 (7%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L M E EA+ IG R Q+ + + R D +DI R L Q Sbjct: 25 LADMTPAERREAVAAIG----EKPFRAKQLSQHYFARYAHDPAEWTDIPAASREKLQQE- 79 Query: 69 SIIYPEIVD--EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + P++++ ISCD TRK L + + +E+V + R T+C+SSQ GC Sbjct: 80 --LLPDLMNVLRHISCDDDTTRKTLWKLHDGTL-----VESVLMRYPDRVTMCISSQAGC 132 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EI+ Q++ L D +P ++SNIV Sbjct: 133 GMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDGE---------VPGGPARLSNIVF 183 Query: 185 MGMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 MGMGEPL N++ V ++ +D GL S+R IT+ST G VP + R +E LA+ Sbjct: 184 MGMGEPLANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAV 243 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++LR+ LVP+N ++ + ++DA Y + RRI+ EY +++ IND Sbjct: 244 SLHAPDDELRDTLVPVNTRWNVREVLDAAWEY-AEKSGRRISIEYALIRDINDQAWRGDL 302 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L K+LKG +NLIP NP PG ++ S +D F E I R G +R RG +I A Sbjct: 303 LGKLLKGKRVHVNLIPLNPTPGSKWTASRPEDERAFVEAIARHGVPVTVRDTRGQEIDGA 362 Query: 362 CGQLKS 367 CGQL + Sbjct: 363 CGQLAA 368 >gi|330466309|ref|YP_004404052.1| ribosomal RNA large subunit methyltransferase N [Verrucosispora maris AB-18-032] gi|328809280|gb|AEB43452.1| ribosomal RNA large subunit methyltransferase N [Verrucosispora maris AB-18-032] Length = 383 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 121/342 (35%), Positives = 184/342 (53%), Gaps = 25/342 (7%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD--EKISCD--GTRKW 88 R QI + R +RD M+D+ R L + P +++ +++CD TRK Sbjct: 46 FRARQISTHYFGRLVRDPAQMTDLPAASRARLADQ---LLPRLLNPVRELACDDGATRKA 102 Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 L R + +E+V + R T+C+SSQ GC + C FC TG L RNL+ EI+ Sbjct: 103 LWRLHDGAL-----VESVLMGYPDRVTVCISSQAGCGMACPFCATGQAGLTRNLSTAEIV 157 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASD 206 Q + + G V+ S R +S++V MGMGEPL N++ V ++ +A Sbjct: 158 DQAVYLAGVAA--------SGAVVGSPAR-LSHVVFMGMGEPLANYNRVVAAIRRLVAPA 208 Query: 207 SMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEM 265 GL S+R IT+ST G VP I R+ E++ V LA+SLHA ++LR+ LVP+N+++ + Sbjct: 209 PEGLGLSQRHITVSTVGLVPAIHRLASEDLSVTLALSLHAPDDELRDELVPVNQRWKVSE 268 Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE 325 ++DA Y RR++ EY M+K +ND P A L ++L G A +NLIP NP PG Sbjct: 269 VLDAAWAY-AARTGRRVSIEYAMIKDVNDQPWRADLLGRLLAGKLAHVNLIPLNPTPGSR 327 Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 + S + F ++ +G S+ +R RG +I ACGQL + Sbjct: 328 WDASPKPVEREFVRRLRDAGVSTTVRDTRGREIDGACGQLAA 369 >gi|320161065|ref|YP_004174289.1| hypothetical protein ANT_16630 [Anaerolinea thermophila UNI-1] gi|319994918|dbj|BAJ63689.1| hypothetical protein ANT_16630 [Anaerolinea thermophila UNI-1] Length = 357 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 121/355 (34%), Positives = 187/355 (52%), Gaps = 26/355 (7%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 E+L+ L+ G P R Q+W+ +Y + + + + +R+ L + FS + Sbjct: 19 EDLQNILVAWGEPP----FRAKQVWEGLYHSFWNSPEEFTHLPKTLRNRLAEEFSFSHLS 74 Query: 75 IVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133 + S DG T K L P IETV + K R TLC+S+Q GC++ C FC T Sbjct: 75 PIQTYASEDGETSKTLFHLPDN-----RSIETVLMRYKERRTLCISTQSGCAMGCVFCAT 129 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 G R+L++ EI+ QV+ LL ++N+V+MGMGEP N Sbjct: 130 GQMGFGRHLSSGEIVEQVIYFARLLR--------------KTNEVVTNVVVMGMGEPFHN 175 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252 ++N K+++ + G + RR T+ST G VP I R +E + LAISLHA ++ LR+ Sbjct: 176 YENTLKAIARLNHPEGFNLGARRFTISTVGLVPMIERFAQENHQINLAISLHAANDTLRS 235 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312 L+P+N+KYP+ L+ A R Y RR+TFE+ +++ INDSP A L +LKG+ Sbjct: 236 SLLPVNKKYPISDLMRAVRQYVA-QTGRRVTFEWALIRDINDSPEHARELASLLKGLLCH 294 Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 +N+IP NP + ++ F ++++G + IR RG+DI A CGQL + Sbjct: 295 VNVIPLNPTQKYHGKATTRERAEAFCSILQKAGIPATIRLRRGIDIQAGCGQLAT 349 >gi|183981843|ref|YP_001850134.1| hypothetical protein MMAR_1830 [Mycobacterium marinum M] gi|205829814|sp|B2HJP3|RLMN_MYCMM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|183175169|gb|ACC40279.1| conserved hypothetical protein [Mycobacterium marinum M] Length = 364 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 126/358 (35%), Positives = 188/358 (52%), Gaps = 36/358 (10%) Query: 20 ALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD-- 77 A+ +G+P R Q+ Y R I D + M+D+ VR Q ++P ++ Sbjct: 30 AVAALGLPP----FRAKQLAHQYYGRLIADPRQMTDLPAAVRE---QIAETMFPNLLTAA 82 Query: 78 EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135 +++CD TRK L R G V +E+V + R T+C+SSQ GC + C FC TG Sbjct: 83 REVTCDAGQTRKTLWR----ATDG-VTLESVLMRYPQRNTVCISSQAGCGMACPFCATGQ 137 Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195 L RNL+ EIL QV A + L D G ++SN+V MGMGEPL N+ Sbjct: 138 GGLTRNLSTAEILEQVRAAAAALRD-------------EFGDRLSNVVFMGMGEPLANYA 184 Query: 196 NVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252 V ++ ++ MG S R +T+ST G P I ++ +E +GV LA+SLHA ++LR+ Sbjct: 185 RVLAAVRRITEPPPMGFGISARSVTVSTVGLAPAIRKLADERLGVTLALSLHAPDDELRD 244 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GI 309 LVP+N ++ + ++A HY RR++ EY +++ +ND P A L K L G Sbjct: 245 TLVPVNNRWKISEALEAA-HYYAEVTGRRVSVEYALIREVNDQPWRADLLGKRLHRALGP 303 Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 +NLIP NP PG ++ S + F + ++ G S +R RG +I AACGQL + Sbjct: 304 LVHVNLIPLNPTPGSDWDASPKPVEREFVKRVRAQGVSCTVRDTRGREISAACGQLAA 361 >gi|33865151|ref|NP_896710.1| ribosomal RNA large subunit methyltransferase N [Synechococcus sp. WH 8102] gi|81575037|sp|Q7U8K0|RLMN_SYNPX RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|33638835|emb|CAE07132.1| conserved hypothetical protein [Synechococcus sp. WH 8102] Length = 344 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 125/366 (34%), Positives = 181/366 (49%), Gaps = 37/366 (10%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH- 67 L+G ELE + Q R Q+ W+Y +G R ++ + + R L + Sbjct: 2 LLGRSAAELE----SWAVAQGQKPFRGRQLHDWLYAKGARSLSEITVLPKAWRESLKEDG 57 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 + + V ++ D T K LL IETV IP R T+CVSSQVGC + Sbjct: 58 VEVGRLKEVHRSVAADATTKLLL-----STDDGETIETVGIPTDQRLTVCVSSQVGCPMA 112 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC TG L R+L EI+ QVL R ++ R+ S+IV MGM Sbjct: 113 CRFCATGKGGLQRSLRTHEIVDQVLSVREVMD-----------------RRPSHIVFMGM 155 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIGVMLA 240 GEPL N V ++ +D +G+ +RRIT+ST G + ++ E LA Sbjct: 156 GEPLLNSQAVLDAIRCLNDDLGIG--QRRITVSTVGVPKTLPQLAELALATLGRAQFTLA 213 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA + LR L+P YP E L++ CRHY ++ RR++FEY++L G+ND+P A Sbjct: 214 VSLHAPNQALREELIPTAHAYPYEALLEDCRHYLAVTG-RRVSFEYILLGGLNDAPEHAA 272 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L + G + +NLI +NP E+ + I F ++R G + +R RGLD A Sbjct: 273 ELADRVGGFQSHVNLIAYNPIEEEEFQRPTRARIEGFQRVLERRGVAVSLRASRGLDQNA 332 Query: 361 ACGQLK 366 ACGQL+ Sbjct: 333 ACGQLR 338 >gi|300776949|ref|ZP_07086807.1| cfr family radical SAM enzyme [Chryseobacterium gleum ATCC 35910] gi|300502459|gb|EFK33599.1| cfr family radical SAM enzyme [Chryseobacterium gleum ATCC 35910] Length = 344 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 120/336 (35%), Positives = 191/336 (56%), Gaps = 24/336 (7%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE-KISCDGTRKWLLR 91 R Q++ W++ + + M+++S+ +R +++ ++I P VD + S DGT K ++ Sbjct: 24 FRAKQVYDWLWSKNLHSIDEMTNLSKSLREKISEEYTI-NPVSVDLLQKSSDGTIKNGVK 82 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 + + +E+V IP ++R T CVSSQVGCSL C FC T K +RNL EI+ QV Sbjct: 83 -----LHDGLMVESVLIPTETRTTACVSSQVGCSLNCEFCATARLKRMRNLEVAEIVDQV 137 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 L I+ R +SNIV MGMGEP+ N+ NV +++ + GL Sbjct: 138 AL-------------IDSQSRMYFDRPLSNIVFMGMGEPMMNYKNVVEAIKKITQPEGLG 184 Query: 212 FSKRRITLSTSGFVPNIARV--GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 S RRIT+STSG +P + ++ +E+ V LA+SLH+ RN ++P + K+PL +++A Sbjct: 185 MSPRRITVSTSG-IPKMIKMLADDELRVKLALSLHSAIESKRNEIMPFSDKFPLTDIMEA 243 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 +++ + + ITFEY + KGIND D LIK K +P+K+NLI +NP +Y Sbjct: 244 LQYWYQKTGSV-ITFEYCVWKGINDGDEDIKALIKYCKQVPSKVNLIQYNPIGDGKYDQC 302 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +++ + ++ +G + +R RG DI AACGQL Sbjct: 303 NKQAEENYIRQLENAGITVMVRRSRGGDIDAACGQL 338 >gi|161528893|ref|YP_001582719.1| radical SAM protein [Nitrosopumilus maritimus SCM1] gi|205829829|sp|A9A3L9|RLMN_NITMS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|160340194|gb|ABX13281.1| radical SAM enzyme, Cfr family [Nitrosopumilus maritimus SCM1] Length = 351 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 120/368 (32%), Positives = 197/368 (53%), Gaps = 31/368 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 L ++ EE+E+ ++ +G + R R QI +Y + +D + + +++R + Sbjct: 3 DLYRLLPEEMEKLVIDMG----YDRYRADQILLPLYYKFPKDINDIPQLPKKLREEFTEA 58 Query: 68 -FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEI-----ETVYIPEKSRGTLCVSS 120 ++I + + +S DG T K LL G VE E I R T+CVS+ Sbjct: 59 GYTIGSAKEIHRVVSDDGDTTKLLLELSD---GSSVETVLMQYEPTKIGGHPRSTICVST 115 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q+GC++ C FC TG NL AE I+ QV+ LL G ++ Sbjct: 116 QIGCAMGCVFCATGQMGFETNLKAEHIVSQVIHFAELL--------------EQRGEHVT 161 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239 N+V MGMGEP+ N+D + +++ I + G +R IT+ST G I ++ EE + + L Sbjct: 162 NLVFMGMGEPMANYDEMIRAVKILTHDRGFGLGQRHITISTIGITSGIEKLAEENLQIGL 221 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 AISLHA +N+LR LVP +E +I + R Y RR+TFEY +++G+NDSP A Sbjct: 222 AISLHAPNNELRKKLVPTAGPNSVEDIIKSGRDYFK-KTGRRVTFEYALMEGVNDSPEIA 280 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L ++L+G + +N+IP NP G ++ +K+++ F + +++SG + +R +G +I Sbjct: 281 HELARLLRGNGSHVNIIPINPTAG-DFKRPSEKNVLEFEQILRKSGVNCTVRVEKGTEIS 339 Query: 360 AACGQLKS 367 AACGQL++ Sbjct: 340 AACGQLRT 347 >gi|222529035|ref|YP_002572917.1| ribosomal RNA large subunit methyltransferase N [Caldicellulosiruptor bescii DSM 6725] gi|222455882|gb|ACM60144.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor bescii DSM 6725] Length = 341 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 129/354 (36%), Positives = 191/354 (53%), Gaps = 31/354 (8%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 +EL++ L IG RTSQI++W+Y + D +++ E+R + F I + Sbjct: 11 DELKKWLENIG----EKPFRTSQIFEWLYKKNATDVMQFTNLPLELREKIEDEFLINSLQ 66 Query: 75 IVDEKISCDGTR-KWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133 I+ K DG K+L C VE +V++P + +CVS+QVGC + C FC + Sbjct: 67 IL--KHQSDGESIKFLFEL---CDKNGVE--SVFLPYRYGNAICVSTQVGCKMNCRFCAS 119 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 VRNL+A E++ Q++ ++E G++I+N+V+MG GEP N Sbjct: 120 AIGGFVRNLSAGEMVDQII-------------NVENFT----GKRITNVVLMGSGEPFDN 162 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRN 252 +NV K + I + G + R IT+ST G V I R+ + V LAISLHA +N LR+ Sbjct: 163 IENVFKFIEIINSKEGKNIGARHITISTVGIVEGIYRLCDFPKQVNLAISLHAPNNSLRD 222 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312 LVPIN+KYP+E ++ A +Y +N RR+TFEY ++ G+NDS A L K+LKG Sbjct: 223 KLVPINKKYPVEDIMKAVDYYIKRTN-RRVTFEYALIDGVNDSIECAQELGKMLKGKLVH 281 Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +NLIP NP + ++ I F E +K + IR G I AACGQL+ Sbjct: 282 VNLIPVNPVEEKGFRRPSKEKIKVFFETLKSYQINVTIRRELGSSISAACGQLR 335 >gi|221195097|ref|ZP_03568153.1| radical SAM enzyme, Cfr family [Atopobium rimae ATCC 49626] gi|221185000|gb|EEE17391.1| radical SAM enzyme, Cfr family [Atopobium rimae ATCC 49626] Length = 361 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 123/361 (34%), Positives = 181/361 (50%), Gaps = 28/361 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K L + E+ E + +G P + R Q+ W++ +G F MS++ + +R L Sbjct: 21 KRGLKTLSHAEIVELVENLGQP----KFRAKQLEDWMWSKGATSFDQMSNLPKSLRAGLA 76 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + S V ++S DG+RK+LL++P V +E V +P ++ +C S+Q GC+ Sbjct: 77 KTVSFQSITQVTRQLSQDGSRKYLLQYPDN-----VCVECVGMPTGNKLAVCASTQAGCA 131 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC TG L R+L+A EI QVL R+ DF ++S++V M Sbjct: 132 MGCAFCATGAAGLTRSLSASEIYDQVLHIRN---DFE--------------MRVSSVVFM 174 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244 G GEP N+DN ++L + + GL R +T+ST G +P I R E LA+SLH Sbjct: 175 GQGEPFMNYDNALEALRLLNSPHGLGIGARHLTISTCGVIPMIKRFANEPEQFTLAVSLH 234 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 + R+IL+P RKY L L D Y RR T+EY ++ GINDS + L Sbjct: 235 SAVQKTRDILMPGVRKYSLLHLYDIMGEYVE-KTGRRPTYEYALIGGINDSENELGALRD 293 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +G A +NLI N PG ++ S F + G + IR RG DI AACGQ Sbjct: 294 FCRGTLAHVNLIQLNEIPGSKFHPSTPARAQQFVTKLGEVGVEATIRISRGADIDAACGQ 353 Query: 365 L 365 L Sbjct: 354 L 354 >gi|297571184|ref|YP_003696958.1| radical SAM enzyme, Cfr family [Arcanobacterium haemolyticum DSM 20595] gi|296931531|gb|ADH92339.1| radical SAM enzyme, Cfr family [Arcanobacterium haemolyticum DSM 20595] Length = 426 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 126/367 (34%), Positives = 186/367 (50%), Gaps = 25/367 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + + + R E + +G PQ R QI K + D + M+D+ R + Q Sbjct: 31 KHMADLTRAERRALVADLGYPQ----FRADQISKHYFEHDCADPEKMTDLPAAQRKEITQ 86 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 ++ P+++ + + ++ + G V +E+V + R TLC+SSQ GC + Sbjct: 87 ---VLLPQLMTKVKDQVADKGATIKTLWKLFDGAV-VESVLMKYPQRATLCISSQAGCGM 142 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG L RNL+ EI+ Q+ AR L I G + +++N+V MG Sbjct: 143 ACPFCATGQAGLTRNLSTAEIIEQLRYAREL-----AASGIFGEPV-----RVTNVVFMG 192 Query: 187 MGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MGEPL NF V+ +L I G S R IT+ST G VP I ++ +E + V LA+SL Sbjct: 193 MGEPLANFPAVRGALRRMIEPAPEGFGMSARNITVSTVGMVPVINKLADEGLPVTLAVSL 252 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA + LR+ L+PIN +Y + L+DA RHY + RR++ EY ++K +ND A L Sbjct: 253 HAPDDALRDDLIPINSRYKVGELLDAARHY-FVRTGRRVSIEYALIKDMNDHEWRAELLA 311 Query: 304 KILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L A +N IP NP PG + CS + TF + +G S+ IR RG DI Sbjct: 312 AELNSRGHGWAHVNPIPLNPTPGSIWTCSTPETTRTFVRTLSDAGISTTIRDTRGSDIDG 371 Query: 361 ACGQLKS 367 ACGQL + Sbjct: 372 ACGQLAA 378 >gi|296171525|ref|ZP_06852789.1| cfr family radical SAM enzyme [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894087|gb|EFG73848.1| cfr family radical SAM enzyme [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 367 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 122/345 (35%), Positives = 184/345 (53%), Gaps = 29/345 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE--KISCDG--TRKW 88 R Q+ Y R I D + M+D+ VR + + ++P ++ ++CD TRK Sbjct: 39 FRAKQLAHQYYGRLIADPRAMTDLPAAVRERVAE---AMFPRLLTAAADVACDAGQTRKT 95 Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 L R G E+V + R T+C+SSQ GC + C FC TG L RNL+ EI+ Sbjct: 96 LWR----GTDG-TTFESVLMRYPQRNTVCISSQAGCGMACPFCATGQGGLTRNLSTAEIV 150 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD-- 206 QV A + L D G G+++SN+V MGMGEPL N+ V ++ ++ Sbjct: 151 EQVRSAAAALRDDFG----------PPGQRLSNVVFMGMGEPLANYARVVAAVRRITEPP 200 Query: 207 SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEM 265 G S R +T+ST G P I ++ +E +GV LA+SLHA ++LR+ LVP+N ++ ++ Sbjct: 201 PHGFGISARSVTVSTVGLAPAIRKLADERLGVTLALSLHAPDDELRDTLVPVNNRWKIDE 260 Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIPAKINLIPFNPWP 322 +DA R+Y ++ RR++ EY +++ +ND P A L K L G +NLIP NP P Sbjct: 261 ALDAARYYADVTG-RRVSVEYALIRDVNDQPWRADLLGKRLHRALGPLVHVNLIPLNPTP 319 Query: 323 GCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 G E+ S + F ++ G S +R RG +I AACGQL + Sbjct: 320 GSEWDASPKAAEREFVRRVRAQGVSCTVRDTRGREISAACGQLAA 364 >gi|302537211|ref|ZP_07289553.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp. C] gi|302446106|gb|EFL17922.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp. C] Length = 371 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 128/366 (34%), Positives = 185/366 (50%), Gaps = 29/366 (7%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L + E EA+ IG R Q+ + + R D +DI R L Q Sbjct: 25 LADLTPAERREAVAAIG----EKPFRAKQLSQHYFARYAHDPAEWTDIPAASREKLQQE- 79 Query: 69 SIIYPEIVD--EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + PE+++ ISCD TRK L + + +E+V + R T+C+SSQ GC Sbjct: 80 --LLPELMNVVRHISCDNDTTRKTLWKLHDGTL-----VESVLMRYPDRVTMCISSQAGC 132 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EI+ Q++ L D +P ++SNIV Sbjct: 133 GMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDGE---------VPGGPARLSNIVF 183 Query: 185 MGMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 MGMGEPL N+ V ++ +D GL S+R IT+ST G VP + R +E LA+ Sbjct: 184 MGMGEPLANYKRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAV 243 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++LR+ LVP+N ++ + ++DA Y + RRI+ EY +++ IND Sbjct: 244 SLHAPDDELRDTLVPVNTRWKVREVLDAAWEY-AEKSGRRISIEYALIRDINDQAWRGDL 302 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++LKG +NLIP NP PG ++ S +D F E I R G +R RG +I A Sbjct: 303 LGRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIARHGVPVTVRDTRGQEIDGA 362 Query: 362 CGQLKS 367 CGQL + Sbjct: 363 CGQLAA 368 >gi|120403214|ref|YP_953043.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium vanbaalenii PYR-1] gi|205829819|sp|A1T787|RLMN_MYCVP RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|119956032|gb|ABM13037.1| 23S rRNA m(2)A-2503 methyltransferase [Mycobacterium vanbaalenii PYR-1] Length = 365 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 126/358 (35%), Positives = 187/358 (52%), Gaps = 36/358 (10%) Query: 20 ALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI--VD 77 A+ ++G+P R Q+ Y R I D M+D+ VR + ++P + Sbjct: 32 AVAELGLPA----FRAKQLANQYYGRLIADPTQMTDLPAAVRERVAD---ALFPTLFGAA 84 Query: 78 EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135 +I CD TRK L R + G E+V + R T+C+SSQ GC + C FC TG Sbjct: 85 REIECDSGETRKVLWR----AVDG-TTFESVLMRYPDRNTVCISSQAGCGMACPFCATGQ 139 Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195 L RNL+ EIL QV A + L D G ++SN+V MGMGEPL N++ Sbjct: 140 GGLKRNLSTAEILEQVRAASAELRDRDGG-------------RLSNVVFMGMGEPLANYN 186 Query: 196 NVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252 V ++ AS G S R +T+ST G P I ++ +E + V LA+SLH ++LR+ Sbjct: 187 RVVAAVRRITASSPNGFGISARSVTVSTVGLAPAIRKLADEKLNVTLALSLHTPDDELRD 246 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA- 311 LVP+N ++ ++ ++DA R+Y ++ RR++ EY +++ +ND P A L K L G Sbjct: 247 TLVPVNNRWKVDEVLDAARYYADVT-GRRVSIEYALIRDVNDQPWRADLLGKKLHGELGP 305 Query: 312 --KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 +NLIP NP PG E+ S + F ++ G S +R RG +I AACGQL + Sbjct: 306 LVHVNLIPLNPTPGSEWDASPKPVEREFVRRVRAKGVSCTVRDTRGREIAAACGQLAA 363 >gi|124022151|ref|YP_001016458.1| ribosomal RNA large subunit methyltransferase N [Prochlorococcus marinus str. MIT 9303] gi|205829805|sp|A2C6T3|RLMN_PROM3 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123962437|gb|ABM77193.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus str. MIT 9303] Length = 356 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 126/369 (34%), Positives = 195/369 (52%), Gaps = 37/369 (10%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 ++L+G ELE + G P R Q+ W+Y +G R F ++ + + R L Sbjct: 10 NQALLGCSATELESWAVAEGQPA----FRGRQLHDWLYAKGARSFDAITVLPKSWRISLQ 65 Query: 66 QH-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q +I V+ ++ D T K LL + G IE+V IP + R T+C+SSQVGC Sbjct: 66 QRGLTIGRLLEVNRAVAVDDTTKLLLA----TVDGET-IESVGIPTQQRLTVCLSSQVGC 120 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC +G L R+L EI+ QVL R ++ R+ S++V Sbjct: 121 PMACRFCASGKGGLQRSLATHEIVDQVLSLRE-----------------AMDRRPSHVVF 163 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF---VPNIARVG-EEIG---V 237 MGMGEPL N + V S+ + +G++ +RRIT+ST G +P +A + + +G Sbjct: 164 MGMGEPLLNIEAVLASIRCLNIDLGIA--QRRITVSTVGVPHTLPQLAELAMKRLGRAQF 221 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 LA+SLHA + +LR L+P YP E L+ CRHY ++ RR+TFEY++L +ND P+ Sbjct: 222 TLAVSLHAPNQELRERLIPTACAYPFETLLQDCRHYLAVTG-RRVTFEYILLGALNDQPQ 280 Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 A L + ++G + +NLI +NP + + + I F +++ G + +R RGLD Sbjct: 281 HAEELAERVRGFQSHVNLIAYNPIDDEGFQRPNPETIEAFRRVLEQRGVAVSLRASRGLD 340 Query: 358 ILAACGQLK 366 AACGQL+ Sbjct: 341 QNAACGQLR 349 >gi|329936699|ref|ZP_08286406.1| Ribosomal RNA large subunit methyltransferase N [Streptomyces griseoaurantiacus M045] gi|329303929|gb|EGG47812.1| Ribosomal RNA large subunit methyltransferase N [Streptomyces griseoaurantiacus M045] Length = 370 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 128/362 (35%), Positives = 184/362 (50%), Gaps = 29/362 (8%) Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75 E +EA+ IG R Q+ + + R D Q +DI R L + + PE+ Sbjct: 31 ERKEAVSAIG----EKPFRAKQLSQHYFARYSHDPQEWTDIPAASRGRLRE---ALLPEL 83 Query: 76 VDE----KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131 + D TRK L R G + +E+V + R T+C+SSQ GC + C FC Sbjct: 84 MTVVRHLSTDADTTRKTLWRL----FDGTL-VESVLMRYPDRVTMCISSQAGCGMNCPFC 138 Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191 TG L RNL+ EI+ Q++ G + IP ++SNIV MGMGEPL Sbjct: 139 ATGQAGLDRNLSTAEIVHQIV---------DGMRALRDGEIPGGPARLSNIVFMGMGEPL 189 Query: 192 CNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248 N++ V ++ +D GL S+R IT+ST G VP I R +E LAISLHA + Sbjct: 190 ANYNRVVAAIRRLTDPEPDGLGLSQRGITVSTVGLVPAIHRFTDEGFKCRLAISLHAPDD 249 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 +LR+ LVP+N ++ + ++DA Y S RR++ EY +++ IND L ++LKG Sbjct: 250 ELRDTLVPVNTRWKVREVLDAGFEYAARSG-RRLSIEYALIRDINDQAWRGDRLGRLLKG 308 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 P +NLIP NP PG ++ S +D F E I G +R RG +I ACGQL + Sbjct: 309 RPVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTVRDTRGQEIDGACGQLAAT 368 Query: 369 SK 370 + Sbjct: 369 ER 370 >gi|256827808|ref|YP_003151767.1| radical SAM enzyme, Cfr family [Cryptobacterium curtum DSM 15641] gi|256583951|gb|ACU95085.1| radical SAM enzyme, Cfr family [Cryptobacterium curtum DSM 15641] Length = 351 Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 122/362 (33%), Positives = 183/362 (50%), Gaps = 38/362 (10%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 E L +L + G+P R QI +W+Y RG + M+D+ +R L P Sbjct: 11 ERLTSSLTEQGLPA----FRARQIIRWVYERGTLSYGEMTDLPLSLRKSLAHQMPFAPPR 66 Query: 75 IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG--------TLCVSSQVGCSL 126 I+D +IS DG RK++L F E+ETV IP +++ T+C S+QVGC + Sbjct: 67 IIDRQISRDGARKYVLAFSDN-----AEVETVAIPSRTKTAEGTPEHLTVCFSTQVGCPM 121 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 CSFC TGT+ L R+L E++ Q+L V + ++S+ V MG Sbjct: 122 ACSFCATGTEGLTRSLLPGEMVQQLL-----------------TVQRDMNMRVSHAVAMG 164 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245 GEP N+DN+ +L I ++ +G+ R IT+ST G + I LA+SLH+ Sbjct: 165 QGEPFLNYDNLVAALEIINEPLGIG--ARHITVSTCGILAGIDHFAHLSQQYTLALSLHS 222 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + RN L+P PL L A + Y +S RR + EY+M+ G+ND D L Sbjct: 223 AIQEKRNQLMPRCSTVPLPRLKQALKEYARVS-GRRPSVEYLMIGGVNDGTTDLEALSSF 281 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 G+ INL+P N + S QK + T+ + +++ G+ + IR+ RG DI ACGQL Sbjct: 282 CSGLFVHINLLPMNNIEESPFRPSPQKTMKTWKQVLEQRGWETTIRSSRGSDIDGACGQL 341 Query: 366 KS 367 K+ Sbjct: 342 KN 343 >gi|33863770|ref|NP_895330.1| ribosomal RNA large subunit methyltransferase N [Prochlorococcus marinus str. MIT 9313] gi|81577096|sp|Q7V5P5|RLMN_PROMM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|33635353|emb|CAE21678.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9313] Length = 356 Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 125/369 (33%), Positives = 197/369 (53%), Gaps = 37/369 (10%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 ++L+G ELE + G P R Q+ +W+Y +G R F+ ++ + + R L Sbjct: 10 NQALLGCSATELEGWAVAEGQPA----FRGRQLHEWLYAKGARSFEAITVLPKSWRLSLQ 65 Query: 66 QHFSIIYPEI-VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q I + V+ ++ D T K LL + G IE+V IP + R T+C+SSQVGC Sbjct: 66 QRGITIGRLLEVNRAVAVDDTTKLLLA----TVDGET-IESVGIPTQQRLTVCLSSQVGC 120 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC +G L R+L EI+ QVL R ++ R+ S++V Sbjct: 121 PMACRFCASGKGGLQRSLATHEIVDQVLSLRE-----------------AMDRRPSHVVF 163 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF---VPNIARVG-EEIG---V 237 MGMGEPL N + V ++ + +G++ +RRIT+ST G +P++A + + +G Sbjct: 164 MGMGEPLLNIEAVLAAIRCLNIDLGIA--QRRITVSTVGVPHTLPHLAELAMKRLGRAQF 221 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 LA+SLHA + +LR L+P YP E L+ CRHY ++ RR+TFEY++L +ND P+ Sbjct: 222 TLAVSLHAPNQELRERLIPTACAYPFETLLQDCRHYLAVTG-RRVTFEYILLGALNDQPQ 280 Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 A L ++G + +NLI +NP + + + I F +++ G + +R RGLD Sbjct: 281 HAEELADRVRGFQSHVNLIAYNPIDDEGFQRPNPETIEAFRRVLEQRGVAVSLRASRGLD 340 Query: 358 ILAACGQLK 366 AACGQL+ Sbjct: 341 QNAACGQLR 349 >gi|224003697|ref|XP_002291520.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220973296|gb|EED91627.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 343 Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 125/345 (36%), Positives = 189/345 (54%), Gaps = 33/345 (9%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI WI+ +G+ MSD+ ++R +L + ++ + E++S DGTRK + Sbjct: 21 FRARQIHNWIFSQGVTSIDDMSDLPLKLRTMLKERATVGSLHLEVEQVSQDGTRKRAYKL 80 Query: 93 PARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 + IE+V +P E R T CVSSQ GC++ C FC TG R LT++EI QV Sbjct: 81 HDGQM-----IESVLMPYEDGRRTACVSSQAGCAMGCVFCATGQMGFARQLTSDEIFEQV 135 Query: 152 -LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210 A L G+ G ++SN+VMMGMGEPL N+ NV ++ + +G+ Sbjct: 136 ATFANELKGE---------------GERLSNVVMMGMGEPLANYRNVLAAMHRMNTDLGI 180 Query: 211 SFSKRRITLSTSGFVPNIAR-VGEEIGVMLAISLHAVSNDLRNILVPINRKY-PLEMLID 268 R+IT+ST G VPNI + + E++ V LA+SLH +++ R L+P NR+Y L+ L+ Sbjct: 181 --GARKITISTVGVVPNIKKLIEEDLQVRLALSLHCATDEERTALLPANRRYGGLDELMT 238 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP-----AKINLIPFNPWPG 323 R Y + R+TFE+ +++G NDS A L ++L+ A +NLIP NP G Sbjct: 239 TIREYIRVKKM-RVTFEWALIEGQNDSKDVARTLGRLLQKHDIRPDMAHVNLIPLNPTGG 297 Query: 324 CEYLCSDQKDIVTFSECIKRS-GYSSPIRTPRGLDILAACGQLKS 367 S + ++ F E +++ G S+ R RG+DI A CGQLK+ Sbjct: 298 YGGGPSGRNNVHRFVEVLEKEFGISATPRMRRGIDIDAGCGQLKA 342 >gi|258645365|ref|ZP_05732834.1| radical SAM enzyme, Cfr family [Dialister invisus DSM 15470] gi|260402714|gb|EEW96261.1| radical SAM enzyme, Cfr family [Dialister invisus DSM 15470] Length = 345 Score = 193 bits (490), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 126/362 (34%), Positives = 194/362 (53%), Gaps = 27/362 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K ++ G+ +ELE ++ G P R R Q+ ++Y R I F M+ SQ++R L Sbjct: 2 KRNIWGLNLQELETWVVGNGFP----RFRAKQLRDYLYKRHIFHFDEMTQFSQKMRDWLK 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++ I P I+ S D K + G VE TV + ++CVS+QVGC+ Sbjct: 58 ENGQIDKPVIISRAQSDD--EKTIKLLLKLKDGSLVE--TVCMCHHYGNSICVSTQVGCA 113 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC + + L RNLTA EIL Q+ + L D P +IV+M Sbjct: 114 MGCIFCASTRKGLERNLTAGEILAQMYAFKELY-DIP----------------FHSIVLM 156 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G GEPL N+ V + +A+D L+ S R IT+ST G VP I R+ +E I + LAISLH Sbjct: 157 GAGEPLTNYKEVLHFIHLANDPELLNISYRNITISTCGIVPQIYRLADENIPITLAISLH 216 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++ +RN+LVPI++ + ++ ++ A +Y RR+TFEY+++K +N S +A L + Sbjct: 217 APNDRIRNVLVPISKNFRIKDVVSAAEYYFK-KTKRRVTFEYILIKDMNASVENAKELCR 275 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 ++ +P INLIP N + + K+I F + + + G + +R G +I AACGQ Sbjct: 276 LIGKMPCHINLIPINSTEHIKLYPPEWKEIKRFQDILLKKGKETTVRKQMGDEIQAACGQ 335 Query: 365 LK 366 LK Sbjct: 336 LK 337 >gi|297202671|ref|ZP_06920068.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sviceus ATCC 29083] gi|197713246|gb|EDY57280.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sviceus ATCC 29083] Length = 368 Score = 193 bits (490), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 125/345 (36%), Positives = 178/345 (51%), Gaps = 25/345 (7%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI--VDEKISCD--GTRKW 88 R Q+ + + R D +DI R L + + PE+ V +S D TRK Sbjct: 42 FRAKQLSQHYFARYAHDPAEWTDIPAGARGKLQE---ALLPELMTVVRHLSTDQGTTRKT 98 Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 L R + +E+V + R T+C+SSQ GC + C FC TG L RNL+ EI+ Sbjct: 99 LWRLFDGTL-----VESVLMRYPDRVTMCISSQAGCGMNCPFCATGQAGLDRNLSTAEIV 153 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 Q++ L D +P ++SNIV MGMGEPL N+ V +S+ +D Sbjct: 154 HQIVDGMRALRDGE---------VPGGPARLSNIVFMGMGEPLANYKRVTQSIRALTDPA 204 Query: 209 --GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEM 265 GL S+R IT+ST G VP I R +E LAISLHA ++LR+ LVP+N ++ + Sbjct: 205 PDGLGLSQRGITVSTVGLVPAIHRFSDEGFKCRLAISLHAPDDELRDTLVPVNTRWKVRE 264 Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE 325 ++DA Y S RR++ EY +++ IND L ++LKG P +NLIP NP PG + Sbjct: 265 VLDAGFEYVEKSG-RRLSIEYALIRDINDQAWRGDRLGRLLKGKPVHVNLIPLNPTPGSK 323 Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 + S +D F E I G + IR RG +I ACGQL + + Sbjct: 324 WTASRPEDEKAFVEAIAAHGVAVTIRDTRGQEIDGACGQLAATER 368 >gi|42527577|ref|NP_972675.1| radical SAM protein [Treponema denticola ATCC 35405] gi|81570188|sp|Q73KZ3|RLMN_TREDE RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|41818162|gb|AAS12586.1| radical SAM enzyme, Cfr family [Treponema denticola ATCC 35405] Length = 347 Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 125/368 (33%), Positives = 190/368 (51%), Gaps = 33/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L GM EE++ G+ ++ R QI+ WI G+ F M+++S ++R L Sbjct: 7 KTALSGMFPEEIQSF---CGLKEK---FRAQQIFHWI-ASGVNSFDEMTNLSFDMRSKLK 59 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQVGC 124 FS+ +I + DGT ++ G V IETV + +K+ R T CVS Q GC Sbjct: 60 NDFSLFSTKIKEALKDKDGT----IKLAVELYDGSV-IETVLLTDKAKRKTACVSCQAGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC TG +RNL+A EI+ Q L G + NIV Sbjct: 115 PMKCAFCKTGQIGFLRNLSASEIVEQFLHLEREAGS------------------LDNIVF 156 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MGMGEP+ N + K+++I + G + SKRRIT+STSG I + ++ V LA+SL Sbjct: 157 MGMGEPMLNLPEIDKAINILAHPKGRNLSKRRITISTSGLCKGIYEMADKGPEVRLAVSL 216 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 LR+ L+PI + L+ L A +++ SN +R+T E ++KG+N + A +I Sbjct: 217 TTADETLRSELMPITKTNSLDELKQAIKYFNSKSN-KRVTLELALMKGLNTDKKAAQEVI 275 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 + KG+ INLIP+NP G + + ++ TF +K++G + R RG I ACG Sbjct: 276 EFAKGLECFINLIPWNPVEGLNFKTPSETEVRTFETYLKKAGLNISTRQKRGQSIGGACG 335 Query: 364 QLKSLSKR 371 QL S + R Sbjct: 336 QLGSTAAR 343 >gi|289450590|ref|YP_003475435.1| 23S rRNA m2A2503 methyltransferase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185137|gb|ADC91562.1| 23S rRNA m2A2503 methyltransferase [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 345 Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 120/341 (35%), Positives = 183/341 (53%), Gaps = 40/341 (11%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE---KISCDGTRKWLL 90 R Q+ W+ RGI ++DIS+ +R L F+ + +V E K D T K++ Sbjct: 28 RVKQVEAWL-ARGINSPDDLTDISKSLREKLASEFN--FAGLVAERNIKSQLDATEKFVF 84 Query: 91 RFP-ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149 R +C+ E+V++ ++ ++C+S+Q GC + C+FC + RNLTA E+ Sbjct: 85 RLADGQCV------ESVFMQYRTGNSVCLSTQAGCRMGCTFCASTGIGFGRNLTAGELTA 138 Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGR----KISNIVMMGMGEPLCNFDNVKKSLSIAS 205 QV L +GR +IS++V+MG+GEPL N++ V K + + Sbjct: 139 QVAL---------------------IGRHRAERISHVVLMGIGEPLENYEEVVKFIRTVN 177 Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLE 264 + GL+ S R ITLST G V I ++ E + + LAISLHA ++ LR+ L+PI ++YPL Sbjct: 178 NPQGLNISMRHITLSTCGLVDEIKKLAHENLPINLAISLHAPNDVLRSQLMPIAKRYPLA 237 Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGC 324 LI A +Y RRITFEY + +ND ++A L K+L G+ +NLIP N +PG Sbjct: 238 QLIPAASYYAK-QTGRRITFEYALFADVNDRLQEAAELSKLLHGLLCHVNLIPANEFPGS 296 Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 Y S + F + + G ++ +R G DI AACGQL Sbjct: 297 LYHRSSKTSTKNFLDYLTAHGITATVRRELGSDIAAACGQL 337 >gi|78213579|ref|YP_382358.1| hypothetical protein Syncc9605_2063 [Synechococcus sp. CC9605] gi|123729671|sp|Q3AHX9|RLMN_SYNSC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|78198038|gb|ABB35803.1| conserved hypothetical protein [Synechococcus sp. CC9605] Length = 351 Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 128/378 (33%), Positives = 190/378 (50%), Gaps = 38/378 (10%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLN 65 ++L+G EL++ + Q R Q+ WIY +G R ++ + R L+ Sbjct: 3 QALLGRSAAELQD----WAVAQGQKPFRGRQLHDWIYAKGARSLADITVFPKTWRAALVE 58 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + V ++ D T K LL IETV IP R T+CVSSQVGC Sbjct: 59 AGVDVGRLKEVHHSVATDATTKLLL-----STEDGETIETVGIPTDQRLTVCVSSQVGCP 113 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG L R+L EI+ QVL R ++ R+ S+IV M Sbjct: 114 MACRFCATGKGGLQRSLQTHEIVDQVLSVRE-----------------AMDRRPSHIVFM 156 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF---VPNIARVG-EEIG---VM 238 GMGEPL N V +++ +D +G+ +RRIT+ST G +P +A + + +G Sbjct: 157 GMGEPLLNSSAVLEAIRCLNDDLGIG--QRRITVSTVGVPKTLPQLAELAMQRLGRAQFT 214 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLHA + LR L+P YP + L++ CRHY ++ RR++FEY++L G+ND P Sbjct: 215 LAVSLHAPNQRLREELIPTAHAYPYDALLEDCRHYLDVTG-RRVSFEYILLGGLNDQPEH 273 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L + G + +NLI +NP E+ + I F ++R G + +R RGLD Sbjct: 274 AAELADRVGGFQSHVNLIAYNPIEEEEFKRPTPQRIEAFRRVLERRGVAVSLRASRGLDQ 333 Query: 359 LAACGQLKSLSKRIPKVP 376 AACGQL+ + P P Sbjct: 334 NAACGQLRR-QQMAPNTP 350 >gi|218961533|ref|YP_001741308.1| putative radical SAM-dependent enzyme (yfgB) [Candidatus Cloacamonas acidaminovorans] gi|167730190|emb|CAO81102.1| putative radical SAM-dependent enzyme (yfgB) [Candidatus Cloacamonas acidaminovorans] Length = 350 Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 119/361 (32%), Positives = 189/361 (52%), Gaps = 26/361 (7%) Query: 8 SLIGMMREELEEALL--KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 ++ +M E+L ++++ + +P+ ++ Q+ W+Y + + + M+++ +E R L Sbjct: 4 NIFSLMPEDLAKSIISRQPDLPEYRIK----QVLSWLYKFYLNEPEKMTNLPEEFRAFLK 59 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++S PEI + +S DG K+ L I IE+V IP + + TLC+S+QVGC+ Sbjct: 60 TNYSFFLPEIESKLVSQDGAVKYRLLLEDGKI-----IESVLIPAEKKNTLCLSTQVGCA 114 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 C FC TG L+RNL +EI+ QV++A L + S K++N+V+M Sbjct: 115 RNCKFCATGKMGLIRNLATQEIIGQVIIASKELKN-------------SGTAKLTNLVLM 161 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 GMGEP+ N NV +L I + G SFS RRIT+ST G VP I + + I LA+SL Sbjct: 162 GMGEPMDNLKNVLMALQILQSNAGFSFSPRRITVSTCGVVPGIIALADSGIKAKLALSLT 221 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 + R L+P++ +Y L L A +Y + RIT EY+++ N D L K Sbjct: 222 SAIQSKRRKLMPVSDQYNLIQLKQALLYYLR-KTSFRITIEYILIPNFNMDSEDLAALRK 280 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 + KIN IP+NP + + +I F + ++ + +R RG DI ACGQ Sbjct: 281 FTGDLSCKINFIPYNPGRNSPFRAPTETEIKDFMQRAQKLPQAITLRKSRGADIFGACGQ 340 Query: 365 L 365 L Sbjct: 341 L 341 >gi|318042314|ref|ZP_07974270.1| ribosomal RNA large subunit methyltransferase N [Synechococcus sp. CB0101] Length = 356 Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 126/373 (33%), Positives = 188/373 (50%), Gaps = 42/373 (11%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + L+GM LE+ + G R Q+ W+Y +G R +S + + R L Sbjct: 3 QPLLGMGLSALEDWAKQHG----QAAFRGRQLHDWLYAKGARQLADVSVLPKGFREQLAA 58 Query: 67 H-----FSII-YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 F + + ++ DGT K LL + IETV IP + R T+CVSS Sbjct: 59 QPPDGAFDWMGRSRELHRSVARDGTTKLLL-----GTHDGLSIETVGIPAEGRLTVCVSS 113 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC + C FC TG L R+L EI+ QVL R ++ P S Sbjct: 114 QVGCPMACRFCATGKGGLQRSLAVHEIVDQVLSVREVMEQRP-----------------S 156 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF---VPNIARVG-EEIG 236 ++V MGMGEPL N + V ++ +G++ +R+IT+ST G +P +A + E +G Sbjct: 157 HVVFMGMGEPLLNIEAVLDAIQCLCTDLGMA--QRQITVSTVGVPRTLPRLAELALERLG 214 Query: 237 ---VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 LA+SLHA LR L+P YP+E L++ CR Y ++ RR++FEY++L G+N Sbjct: 215 RAQFTLAVSLHAPDQRLREELIPTAHAYPIEALLEDCRRYVAITG-RRVSFEYILLGGLN 273 Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353 D PR A L ++L+G + +NLIP+NP E+ + F ++ + +R Sbjct: 274 DQPRHAAALAQLLRGFQSHVNLIPYNPIEEEEFQRPTPAAVDGFRRALQDRHVAVSVRAS 333 Query: 354 RGLDILAACGQLK 366 RGLD AACGQL+ Sbjct: 334 RGLDADAACGQLR 346 >gi|315925829|ref|ZP_07922036.1| cfr family radical SAM enzyme [Pseudoramibacter alactolyticus ATCC 23263] gi|315620938|gb|EFV00912.1| cfr family radical SAM enzyme [Pseudoramibacter alactolyticus ATCC 23263] Length = 384 Score = 192 bits (489), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 121/354 (34%), Positives = 193/354 (54%), Gaps = 34/354 (9%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISC-DGTRKWLL 90 + R Q+++W+Y + +++ +++R L + I + E++ + DGT+K L+ Sbjct: 58 KFRGRQLFEWLYGKRAMAVDACTNLPKKLRETLKTRWIIDWGEVLGVQADLEDGTKKMLI 117 Query: 91 RFP-ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149 R C+ ETV + +LCVSSQVGC++ C+FC + LVRNLTA E+ Sbjct: 118 RLADGECV------ETVLMAYDYGYSLCVSSQVGCAMGCAFCASTKGGLVRNLTAGEMAA 171 Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209 Q+ L V + G +IS +V+MG+GEPL N+DN+ + + I + G Sbjct: 172 QIAL-----------------VEAAEGVRISRVVVMGIGEPLANYDNLLRFIQILNQGFG 214 Query: 210 LSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 + RRIT+ST G VP I R+ +E + + LAISLH+ +R ++P R+YPL+ L+ Sbjct: 215 IGM--RRITVSTCGIVPMIERLADEALEINLAISLHSPDQAVREQIMPAARRYPLDRLLK 272 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 C++Y RR+TFEY ++ G+ND DA LI + G +NLI NP + Sbjct: 273 TCKNYFN-KTGRRVTFEYALMAGVNDRDEDAKALIGLFSGENVHLNLIRLNPITDGPFAG 331 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR-IPKV--PRQE 379 S +++ F++ +K G + IR G +I AACGQL+ ++ +P V PR E Sbjct: 332 S--QNVTGFAKKLKTGGINCTIRRRIGKNIDAACGQLRHRQEQAVPMVTKPRGE 383 >gi|300933099|ref|ZP_07148355.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium resistens DSM 45100] Length = 371 Score = 192 bits (489), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 126/371 (33%), Positives = 203/371 (54%), Gaps = 36/371 (9%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L M REE++EA+ ++G+P + R Q+ + Y R + D + M+D+ + R + + Sbjct: 21 LADMSREEVKEAVAELGLP----KFRADQLARQYYGRLLADPEEMTDLPENKRGPVRE-- 74 Query: 69 SIIYPEIVD--EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 ++P+++ ++ D TRK L R + +E+V + R TLC+SSQ GC Sbjct: 75 -ALFPQLMTPLRHLNTDDGETRKTLWRLFDGTL-----LESVLMRYPGRATLCISSQAGC 128 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ E++ QV A + + D G V GR +SNIV Sbjct: 129 GMACPFCATGQGGLDRNLSVGEMVEQVRHAAAAMRD--------GEVEGGEGR-LSNIVF 179 Query: 185 MGMGEPLCNF----DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239 MGMGEPL N+ D ++K S + G+ S+R +T+ST G P I ++ +E + V L Sbjct: 180 MGMGEPLANYKRVVDTIRKITSPPPEGFGI--SQRNVTVSTVGLAPAIRKLADEGMTVRL 237 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH ++LR+ LVP+N ++ ++ ++DA R+Y S RR++ EY +++ +ND P A Sbjct: 238 AVSLHTPDDELRDELVPVNNRWSVDEVLDAARYYADTS-GRRVSIEYALIRDMNDQPWRA 296 Query: 300 LNLIKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L K L+G +N+IP NP PG ++ S + F ++ G +R +G Sbjct: 297 DLLGKKLRGALGSKVHVNVIPLNPTPGSKWDASPKAVQDEFVRRVEAQGVPCTVRDTKGQ 356 Query: 357 DILAACGQLKS 367 +I AACGQL + Sbjct: 357 EIAAACGQLAA 367 >gi|302865911|ref|YP_003834548.1| radical SAM enzyme, Cfr family [Micromonospora aurantiaca ATCC 27029] gi|315502468|ref|YP_004081355.1| radical sam enzyme, cfr family [Micromonospora sp. L5] gi|302568770|gb|ADL44972.1| radical SAM enzyme, Cfr family [Micromonospora aurantiaca ATCC 27029] gi|315409087|gb|ADU07204.1| radical SAM enzyme, Cfr family [Micromonospora sp. L5] Length = 381 Score = 192 bits (489), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 120/342 (35%), Positives = 184/342 (53%), Gaps = 25/342 (7%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEIVDEKISCD--GTRKW 88 R Q+ + R +RD + M+D+ R L +++ P +++CD TRK Sbjct: 45 FRAKQVSNHYFGRLVRDPERMTDLPAATRERLAGELLPTLLTPV---RELACDDGATRKA 101 Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 L R + +E+V + R T+C+SSQ GC + C FC TG L RNL+ EI+ Sbjct: 102 LWRLHDGSL-----VESVLMGYPDRVTVCISSQAGCGMACPFCATGQAGLTRNLSTAEIV 156 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASD 206 Q + + G+V S R +S++V MGMGEPL N+ V ++ +A Sbjct: 157 DQAVYLAGVAA--------SGVVAGSPPR-LSHVVFMGMGEPLANYSRVVAAIRRLVAPA 207 Query: 207 SMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEM 265 GL S+R IT+ST G VP I R+ E++ V LA+SLHA ++LR+ LVP+N+++ + Sbjct: 208 PEGLGLSQRHITVSTVGLVPAIRRLASEDLSVTLALSLHAPDDELRDELVPVNQRWKVSE 267 Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE 325 ++DA Y + RR++ EY M+K +ND P A L ++L G A +NLIP NP PG Sbjct: 268 VLDAAWDY-AATTGRRVSIEYAMIKDVNDQPWRADLLGRLLAGKLAHVNLIPLNPTPGSR 326 Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 + S + F ++ +G S+ +R RG +I ACGQL + Sbjct: 327 WDASPKPVEREFVRRLRDAGVSTTVRDTRGREIDGACGQLAA 368 >gi|284045197|ref|YP_003395537.1| radical SAM enzyme, Cfr family [Conexibacter woesei DSM 14684] gi|283949418|gb|ADB52162.1| radical SAM enzyme, Cfr family [Conexibacter woesei DSM 14684] Length = 329 Score = 192 bits (489), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 125/337 (37%), Positives = 180/337 (53%), Gaps = 34/337 (10%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R R Q+W+W RG ++ M+++ +R L + + E + DGT K L Sbjct: 17 RFRAKQVWEWT-ARGAAGYEEMTNLPAALRATLAERVPFSSLTLQHEAHASDGTVKALF- 74 Query: 92 FPARCIGGPVEIETVYIPEKS-RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150 +E V + K R +LC+SSQ GC LTC+FC TGT K RNLTA EIL Q Sbjct: 75 ----STHDGRAVEAVLMRYKDGRRSLCLSSQSGCPLTCTFCATGTMKFGRNLTASEILDQ 130 Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210 L R + ++ + V MGMGEP+ N D+V + A S+G+ Sbjct: 131 ALHFRRI-------------------EEVDHCVFMGMGEPMMNLDHVLAACR-ALPSIGI 170 Query: 211 SFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 + RR +ST G++P I R+ + E+ + LA+SLHA LR+ ++P+N +YPL ++ A Sbjct: 171 --THRRTAISTVGWIPGIERLTDSEMPIRLALSLHAPDEALRSQIMPVNDRYPLRDVLRA 228 Query: 270 CRHYPGLSNARRITF-EYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 CR + RR+ F EYVML G+ND AL L ++L+ K+NLIP+NP Y Sbjct: 229 CRDF--YEKKRRMVFIEYVMLGGVNDGYAQALQLARLLEPWMFKVNLIPYNPTDSI-YDG 285 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 S ++ I TF ++ G S+ +R RG DI AACGQL Sbjct: 286 SSREAIETFRAVLEEHGISATVRLTRGRDIDAACGQL 322 >gi|303273710|ref|XP_003056208.1| predicted protein [Micromonas pusilla CCMP1545] gi|226462292|gb|EEH59584.1| predicted protein [Micromonas pusilla CCMP1545] Length = 358 Score = 192 bits (489), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 131/378 (34%), Positives = 195/378 (51%), Gaps = 39/378 (10%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K+ +L+G+ EL+ IG+P + I+ VR I D + ++ Sbjct: 4 KRFNLLGLTLSELKRFSADIGLPAYRGKQLRDHIYAGPPVRYIDDLVSLPKATRAALLAA 63 Query: 65 NQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG----TLCV 118 + H S ++ +VD DG K LLR +G IETV IP RG T CV Sbjct: 64 DVHIGRSSVHHVVVDS----DGVVKLLLR-----LGDDKVIETVGIPSLERGKDRLTACV 114 Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 SSQVGC + C+FC TG RNL EI+ QVL SL F G++ Sbjct: 115 SSQVGCPMRCTFCATGKGGFTRNLAPHEIVDQVL---SLEEHF--------------GKR 157 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGV 237 ++N+V MGMGEPL N NV ++ + + +G+ R IT+ST G ++ + G + Sbjct: 158 VTNVVFMGMGEPLLNTPNVLRAYTALNTEIGI--GARHITISTVGVRGSLQMLAGARLQS 215 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 LA+SLHA + LR +L+P + YPL L++ C Y ++ RR+TFEY +L GINDS Sbjct: 216 TLAVSLHAPNQSLREVLIPSAKSYPLGELLNDCEQY-FIATGRRVTFEYTLLAGINDSSE 274 Query: 298 DALNLIKIL--KGIPAKINLIPFNP-WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 A+ L ++L K + + +NLIP+NP ++ D+ + F ++ + IR R Sbjct: 275 QAVELAELLHKKKLASHVNLIPYNPVHDAPDFARPDRATVFKFKNILEEMQVPASIRQSR 334 Query: 355 GLDILAACGQLKSLSKRI 372 GL+ AACGQL+S ++I Sbjct: 335 GLEAAAACGQLRSSFQKI 352 >gi|290957076|ref|YP_003488258.1| hypothetical protein SCAB_25951 [Streptomyces scabiei 87.22] gi|260646602|emb|CBG69699.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length = 368 Score = 192 bits (489), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 129/362 (35%), Positives = 185/362 (51%), Gaps = 29/362 (8%) Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75 E +EA+ IG R Q+ + + R D + +DI R L + + PE+ Sbjct: 29 ERKEAVAAIG----EKPFRAKQLSQHYFARYAHDPEQWTDIPAGARAKLRE---ALLPEL 81 Query: 76 --VDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131 V +S D TRK L R + +E+V + R T+C+SSQ GC + C FC Sbjct: 82 MTVVRHLSTDQDTTRKTLWRLFDGTL-----VESVLMRYPDRVTMCISSQAGCGMNCPFC 136 Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191 TG L RNL+ EI+ Q++ L D IP ++SNIV MGMGEPL Sbjct: 137 ATGQAGLDRNLSTAEIVHQIVDGMRALRDGE---------IPGGPARLSNIVFMGMGEPL 187 Query: 192 CNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248 N++ V ++ +D GL S+R IT+ST G VP I R +E LAISLHA + Sbjct: 188 ANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAIHRFADEGFKCRLAISLHAPDD 247 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 +LR+ LVP+N ++ + ++DA Y S RR++ EY +++ IND L ++LKG Sbjct: 248 ELRDTLVPVNTRWKVREVLDAGWEYTARS-GRRLSIEYALIRDINDQAWRGDRLGRLLKG 306 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 P +NLIP NP PG ++ S +D F E I G +R RG +I ACGQL + Sbjct: 307 KPVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAGHGVPVTVRDTRGQEIDGACGQLAAT 366 Query: 369 SK 370 + Sbjct: 367 ER 368 >gi|313816750|gb|EFS54464.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL059PA1] gi|315099197|gb|EFT71173.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL059PA2] Length = 405 Score = 192 bits (489), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 125/370 (33%), Positives = 188/370 (50%), Gaps = 33/370 (8%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQHFSIIYP 73 EE +A+ G+P R QI ++ R D +D+ + R + + F ++ Sbjct: 49 EERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWFPVLLT 104 Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP----EKSRGTLCVSSQVGCSLTCS 129 ++ + T K L R G VE +Y P +R TLC+SSQ GC + C Sbjct: 105 KVSQQSCDRGTTVKTLWRLHG---GALVESVLMYYPATRHSAARATLCLSSQAGCGMACP 161 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 FC TG + RN++ EI+ QVL A L+ G+ PG ++ NIV MGM Sbjct: 162 FCATGQGGIQRNMSTAEIVSQVLAANRLIAAGEVPGASG-----------RVHNIVFMGM 210 Query: 188 GEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 GEP+ N+ +V ++ A G+ S R +TLST G VP I V +E I V LA+SLH Sbjct: 211 GEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKAVTQEGIPVTLAVSLH 270 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++LR+ L+P+NR++ ++ L+DA HY RR++ EY ++K IND A L + Sbjct: 271 APDDELRDELIPVNRRWKVDELLDAAWHY-AEKTKRRVSIEYALMKDINDQADRAAVLAR 329 Query: 305 ILK----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 ++ A +NLIP NP PG + S +D F E ++R +R RG +I Sbjct: 330 QIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTRGSEIDG 389 Query: 361 ACGQLKSLSK 370 ACGQL ++ + Sbjct: 390 ACGQLAAVGR 399 >gi|154491020|ref|ZP_02030961.1| hypothetical protein PARMER_00937 [Parabacteroides merdae ATCC 43184] gi|154088768|gb|EDN87812.1| hypothetical protein PARMER_00937 [Parabacteroides merdae ATCC 43184] Length = 286 Score = 192 bits (488), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 113/292 (38%), Positives = 161/292 (55%), Gaps = 27/292 (9%) Query: 81 SCDGTRKWLLRFPARCIGGPVE-IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV 139 S DGT K+L +PA GP +E+VYIP + R TLCVSSQVGC + C FC TG Q Sbjct: 18 SVDGTIKYL--YPA----GPGNFVESVYIPTEDRATLCVSSQVGCKMNCLFCMTGKQGFT 71 Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199 +NL+A EIL Q+ P E++ +NIV MGMGEPL N D + K Sbjct: 72 KNLSANEILNQI-------QSLPETEEL------------TNIVFMGMGEPLDNVDELFK 112 Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINR 259 L I + S G ++S +RIT+ST G + R EE LA+SLH+ D R L+P+ + Sbjct: 113 VLEILTASYGYAWSPKRITVSTIGVAKGLKRFLEESDCHLAVSLHSPYPDERRSLMPVEK 172 Query: 260 KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFN 319 +P +I+ + Y ++ RR++FEY++ K +ND + A L+ +L +P ++NLI F+ Sbjct: 173 AFPACDIIETIKQY-DFTHQRRVSFEYIVFKNLNDDLQHAKALVCLLDKVPCRVNLIRFH 231 Query: 320 PWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 P SD + F + + +G IR RG DI AACG L + K+ Sbjct: 232 AIPNVSLESSDLARMEAFRDTLNAAGIVCTIRASRGEDIFAACGMLSTAKKQ 283 >gi|213964408|ref|ZP_03392608.1| radical SAM enzyme, Cfr family [Corynebacterium amycolatum SK46] gi|213952601|gb|EEB63983.1| radical SAM enzyme, Cfr family [Corynebacterium amycolatum SK46] Length = 369 Score = 192 bits (488), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 126/363 (34%), Positives = 187/363 (51%), Gaps = 37/363 (10%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 EE + A+ ++G+P R QI + Y R D M+D+ + R + ++P Sbjct: 31 EERKAAVKELGLPA----FRADQIARHYYGRLEADPMTMTDLPEADRQKVKDS---LFPP 83 Query: 75 IVD--EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130 ++ I+CD TRK L R G +E+V + R TLC+SSQ GC + C F Sbjct: 84 LLTPVRHITCDDGETRKTLWR-----AGDGTLLESVLMKYPGRATLCISSQAGCGMACPF 138 Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 C TG L RNL+ EI+ QV A + + + G +++NIV MGMGEP Sbjct: 139 CATGQGGLQRNLSTAEIVDQVREAAATMA--------------AEGGRLTNIVFMGMGEP 184 Query: 191 LCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVS 247 L N++ V ++ G S R +T+ST GF PNI R+ E++ V LA+SLH Sbjct: 185 LANYNRVLAAIHRITRPSPEGFGISMRNVTVSTVGFAPNIRRLADEDLSVTLAVSLHTPD 244 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 ++LR+ LVPIN ++ + ++DA R+Y RR++ EY +++ IND A L K L Sbjct: 245 DELRDELVPINNRFTVAEVLDAARYYAD-KTGRRVSIEYALIRDINDQDWRADLLGKKLH 303 Query: 308 ---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 G +NLIP NP PG ++ S +K F ++ G +R RG +I AACGQ Sbjct: 304 NALGSRVHVNLIPLNPTPGSKWDASPKKQQEEFVRRVQAQGVPCTVRDTRGNEIAAACGQ 363 Query: 365 LKS 367 L + Sbjct: 364 LAA 366 >gi|302554450|ref|ZP_07306792.1| ribosomal RNA large subunit methyltransferase N [Streptomyces viridochromogenes DSM 40736] gi|302472068|gb|EFL35161.1| ribosomal RNA large subunit methyltransferase N [Streptomyces viridochromogenes DSM 40736] Length = 368 Score = 192 bits (487), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 129/369 (34%), Positives = 187/369 (50%), Gaps = 29/369 (7%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L + E +EA+ +G R Q+ + + R D + +DI R L + Sbjct: 22 LADLTPAERKEAVAAVG----EKPFRAKQLSQHYFARYAHDPEQWTDIPAGARGRLQE-- 75 Query: 69 SIIYPEI--VDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + PE+ V +S D TRK L R + +E+V + R T+C+SSQ GC Sbjct: 76 -ALLPELMTVVRHLSTDQGTTRKTLWRLFDGTL-----VESVLMRYPDRVTMCISSQAGC 129 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EI+ Q++ L D +P ++SNIV Sbjct: 130 GMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDGE---------VPGGPARLSNIVF 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 MGMGEPL N++ V S+ +D G+ S+R IT+ST G VP I R +E LAI Sbjct: 181 MGMGEPLANYNRVIGSIRRLTDPEPDGVGLSQRGITVSTVGLVPAIHRFADEGFKCRLAI 240 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++LR+ LVP+N ++ + ++DA Y S RR++ EY +++ IND Sbjct: 241 SLHAPDDELRDTLVPVNTRWKVREVLDAGFEYSAKS-GRRLSIEYALIRDINDQAWRGDR 299 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++LKG P +NLIP NP PG ++ S +D F E I G IR RG +I A Sbjct: 300 LGRMLKGRPVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTIRDTRGQEIDGA 359 Query: 362 CGQLKSLSK 370 CGQL + + Sbjct: 360 CGQLAATER 368 >gi|312127903|ref|YP_003992777.1| radical sam enzyme, cfr family [Caldicellulosiruptor hydrothermalis 108] gi|311777922|gb|ADQ07408.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor hydrothermalis 108] Length = 344 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 120/336 (35%), Positives = 181/336 (53%), Gaps = 27/336 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTR-KWLLR 91 R +Q+++W+Y + D +++ E+R ++ F I +I+ + DG K+L Sbjct: 25 FRATQVFEWLYKKNATDVMQFTNLPLELRKKIDDEFLINSLQILQHQ--SDGESIKFLFE 82 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 C VE +V++P + +CVS+QVGC + C FC + VRNLT E++ Q+ Sbjct: 83 L---CDKNGVE--SVFLPYRYGNAICVSTQVGCRMNCRFCASAIGGFVRNLTPGEMVDQI 137 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 + A + G++I+N+V+MG GEP N +NV K + I + G + Sbjct: 138 INAENF-----------------TGKRITNVVLMGSGEPFDNIENVFKFIEIINSKEGKN 180 Query: 212 FSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 R IT+ST G V I R+ + V LAISLHA +N LR+ LVPIN+KYP+E ++ A Sbjct: 181 IGARHITISTVGIVEGIYRLCDFPKQVNLAISLHAPNNSLRDKLVPINKKYPIEDIMKAV 240 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 +Y +N RR+TFEY ++ G+NDS A L K+LKG +NLIP NP + Sbjct: 241 DYYIQRTN-RRVTFEYALIDGVNDSIECAQELGKMLKGKLVHVNLIPVNPVEEKGFKRPS 299 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 ++ I TF E ++ IR G I AACGQL+ Sbjct: 300 KEKIKTFFETLRSYQIQVTIRRELGSSISAACGQLR 335 >gi|169824362|ref|YP_001691973.1| putative Fe-S-cluster redox protein [Finegoldia magna ATCC 29328] gi|205829759|sp|B0S143|RLMN_FINM2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|167831167|dbj|BAG08083.1| putative Fe-S-cluster redox protein [Finegoldia magna ATCC 29328] Length = 349 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 124/369 (33%), Positives = 198/369 (53%), Gaps = 35/369 (9%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L M +EL+E + G R Q ++ I+ I + M++ S +R LNQ+ Sbjct: 7 LENMTVDELKEFFVNNG----EKPFRALQYFQAIHKNRIFNPDEMTNFSNSLRGKLNQYN 62 Query: 69 SIIYPEIV---DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I I+ D K+ D T+K+L+ I +ETV++ K+ ++C+S+Q+GC Sbjct: 63 DIKNCSIIKRIDSKL--DNTKKYLIEMSDGNI-----VETVFMQYKTHTSICLSTQIGCK 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC + + VRNL E+ Q+ L + L DI +I+NIV+M Sbjct: 116 MGCKFCASTKKSFVRNLQPYEMCAQIYLVENDL-------DI----------RINNIVLM 158 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLH 244 G+GEPL N+DNV + + + +D G S R ITLST G V I R+ ++IG+ + ISLH Sbjct: 159 GIGEPLDNYDNVSRFIDLITDKDGQDMSIRNITLSTCGLVDKIIRLANDDIGINITISLH 218 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 ++ RN L+PI KY +E ++DAC +Y + RRI FEY +++ +NDS + L+ Sbjct: 219 NPFDNERNKLMPIGNKYSIEEILDACDYYFKKT-KRRIGFEYTVIENVNDSKKYMDKLVS 277 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK +NLI NP D+ + F E + ++ ++ IR +G+DI ACGQ Sbjct: 278 LLKNRNCLLNLITLNPIEEFNQKSPDRYKMTEFMEYMNKNNVNTTIRRKQGIDIDGACGQ 337 Query: 365 LK--SLSKR 371 L+ +++KR Sbjct: 338 LRINNMTKR 346 >gi|225028096|ref|ZP_03717288.1| hypothetical protein EUBHAL_02366 [Eubacterium hallii DSM 3353] gi|224954566|gb|EEG35775.1| hypothetical protein EUBHAL_02366 [Eubacterium hallii DSM 3353] Length = 349 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 117/364 (32%), Positives = 189/364 (51%), Gaps = 29/364 (7%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE-VRHLLNQH 67 L M EEL + ++++G + R QI+ W++ + +R + M ++ + + LL +H Sbjct: 7 LKSMTLEELTDCVMELG----EKKFRAKQIYGWLHQKLVRSPEEMKNVPAKCIEKLLKEH 62 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 E+ + DGT+K+L + +E+V + K ++C+SSQ GC + Sbjct: 63 PFYGVEEVEHYESKIDGTQKFLFSLHDGNM-----VESVLMKYKHGNSVCISSQAGCRMG 117 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC + L RNL E+L Q+ + + G ++S++V+MG Sbjct: 118 CRFCASTLLGLSRNLYPSEMLDQIY-----------------AIQKATGERVSHLVVMGT 160 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAV 246 GEP NF+++ + + + GL+ S R IT+ST G VP I + V LAISLH+ Sbjct: 161 GEPFDNFESLCRMIELLCSPDGLNISHRNITVSTCGIVPKIYEFADRNPQVTLAISLHSP 220 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ +R L+PI KY ++ L++A R+Y + RRITFEY ++KG+ND A LI + Sbjct: 221 NDTMRRELMPIANKYSMDELMEAARYYT-RTTGRRITFEYSLVKGVNDKKEHAQELISRV 279 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 KG+ INLIP NP ++ S Q ++ F ++R +R G DI AACGQL+ Sbjct: 280 KGMNCHINLIPVNPIKERDFEQSTQNNVAAFKHILERQHIQVTVRREMGRDIQAACGQLR 339 Query: 367 SLSK 370 K Sbjct: 340 KSYK 343 >gi|303233967|ref|ZP_07320616.1| 23S rRNA m2A2503 methyltransferase [Finegoldia magna BVS033A4] gi|302494892|gb|EFL54649.1| 23S rRNA m2A2503 methyltransferase [Finegoldia magna BVS033A4] Length = 349 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 124/369 (33%), Positives = 198/369 (53%), Gaps = 35/369 (9%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L M +EL+E + G R Q ++ I+ I + M++ S +R LNQ+ Sbjct: 7 LENMTVDELKEFFVNNG----EKPFRALQYFQAIHKNRIFNPNEMTNFSNSLREKLNQYN 62 Query: 69 SIIYPEIV---DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I I+ D K+ D T+K+L+ I +ETV++ K+ ++C+S+Q+GC Sbjct: 63 DIKNCSIIKRIDSKL--DNTKKYLIEMSDGNI-----VETVFMQYKTHTSICLSTQIGCK 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC + + VRNL E+ Q+ L + L DI +I+NIV+M Sbjct: 116 MGCKFCASTKKSFVRNLQPYEMCAQIYLVENDL-------DI----------RINNIVLM 158 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLH 244 G+GEPL N+DNV + + + +D G S R ITLST G V I R+ ++IG+ + ISLH Sbjct: 159 GIGEPLDNYDNVIRFIDLITDKDGQDMSIRNITLSTCGLVDKIIRLANDDIGINITISLH 218 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 ++ RN L+PI KY +E ++DAC +Y + RRI FEY +++ +NDS + L+ Sbjct: 219 NPFDNERNKLMPIGNKYSIEEILDACDYYFKKT-KRRIGFEYTVIENVNDSKKYMDKLVS 277 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK +NLI NP D+ + F E + ++ ++ IR +G+DI ACGQ Sbjct: 278 LLKNRNCLLNLITLNPIEEFNQKSPDRYKMTEFMEYMNKNNVNTTIRRKQGIDIDGACGQ 337 Query: 365 LK--SLSKR 371 L+ +++KR Sbjct: 338 LRINNMTKR 346 >gi|215428321|ref|ZP_03426240.1| hypothetical protein MtubT9_18783 [Mycobacterium tuberculosis T92] gi|215431827|ref|ZP_03429746.1| hypothetical protein MtubE_14401 [Mycobacterium tuberculosis EAS054] gi|260202014|ref|ZP_05769505.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium tuberculosis T46] gi|289444435|ref|ZP_06434179.1| cfr family radical SAM enzyme [Mycobacterium tuberculosis T46] gi|289751545|ref|ZP_06510923.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289417354|gb|EFD14594.1| cfr family radical SAM enzyme [Mycobacterium tuberculosis T46] gi|289692132|gb|EFD59561.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] Length = 364 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 125/360 (34%), Positives = 188/360 (52%), Gaps = 36/360 (10%) Query: 19 EALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV-- 76 A+ ++G+P R Q+ Y R I D + M+D+ VR ++ ++P ++ Sbjct: 29 SAVAELGLPA----FRAKQLAHQYYGRLIADPRQMTDLPAAVR---DRIAGAMFPNLLTA 81 Query: 77 DEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134 I+CD TRK L R + G + E+V + R T+C+SSQ GC + C FC TG Sbjct: 82 SADITCDAGQTRKTLWR----AVDGTM-FESVLMRYSRRNTVCISSQAGCGMACPFCATG 136 Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194 L RNL+ EIL QV + L D G ++SN+V MGMGEPL N+ Sbjct: 137 QGGLTRNLSTAEILEQVRAGAAALRD-------------DFGDRLSNVVFMGMGEPLANY 183 Query: 195 DNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLR 251 V ++ A G S R +T+ST G P I + + +GV LA+SLHA + LR Sbjct: 184 ARVLAAVQRITARPPSGFGISARAVTVSTVGLAPAIRNLADARLGVTLALSLHAPDDGLR 243 Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---G 308 + LVP+N ++ + +DA R+Y ++ RR++ EY +++ +ND P A L K L G Sbjct: 244 DTLVPVNNRWRISEALDAARYYANVTG-RRVSIEYALIRDVNDQPWRADLLGKRLHRVLG 302 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 A +NLIP NP PG ++ S + F + ++ G S +R RG +I AACGQL ++ Sbjct: 303 PLAHVNLIPLNPTPGSDWDASPKPVEREFVKRVRAKGVSCTVRDTRGREISAACGQLAAV 362 >gi|315081237|gb|EFT53213.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL078PA1] Length = 405 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 124/370 (33%), Positives = 188/370 (50%), Gaps = 33/370 (8%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQHFSIIYP 73 EE +A+ G+P R QI ++ R D +D+ + R + + F ++ Sbjct: 49 EERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWFPVLLT 104 Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP----EKSRGTLCVSSQVGCSLTCS 129 ++ + T K L R G VE +Y P +R TLC+SSQ GC + C Sbjct: 105 KVSQQSCDRGTTVKTLWRLHG---GALVESVLMYYPATRHSAARATLCLSSQAGCGMACP 161 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 FC TG + RN++ EI+ QVL A L+ G+ PG ++ NIV MGM Sbjct: 162 FCATGQGGIQRNMSTAEIVSQVLAANRLIAAGEVPGASG-----------RVHNIVFMGM 210 Query: 188 GEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 GEP+ N+ +V ++ A G+ S R +TLST G VP I + +E I V LA+SLH Sbjct: 211 GEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVTLAVSLH 270 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++LR+ L+P+NR++ ++ L+DA HY RR++ EY ++K IND A L + Sbjct: 271 APDDELRDELIPVNRRWKVDELLDAASHY-AEKTKRRVSIEYALMKDINDQADRAAVLAR 329 Query: 305 ILK----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 ++ A +NLIP NP PG + S +D F E ++R +R RG +I Sbjct: 330 QIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTRGSEIDG 389 Query: 361 ACGQLKSLSK 370 ACGQL ++ + Sbjct: 390 ACGQLAAVGR 399 >gi|307330070|ref|ZP_07609221.1| radical SAM enzyme, Cfr family [Streptomyces violaceusniger Tu 4113] gi|306884331|gb|EFN15366.1| radical SAM enzyme, Cfr family [Streptomyces violaceusniger Tu 4113] Length = 368 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 130/366 (35%), Positives = 188/366 (51%), Gaps = 29/366 (7%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L + E EA+ +G R SQ+ + + R + D SDI R L Sbjct: 22 LADLTPAERREAVAALG----EKPFRASQVSRHYFARYVDDPAQWSDIPAAAREKLA--- 74 Query: 69 SIIYPEI--VDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + + PE+ V ISCD TRK L R G + +E+V + R T+C+SSQ GC Sbjct: 75 AGLLPELMSVVRHISCDDDTTRKTLWRL----FDGTL-VESVLMRYPDRVTMCISSQAGC 129 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EI+ Q++ L D IP ++SNIV Sbjct: 130 GMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDGE---------IPGGPARLSNIVF 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 MGMGEPL N++ V ++ +D GL S+R IT+ST G VP + R +E LA+ Sbjct: 181 MGMGEPLANYNRVVGAIRRLTDPEPDGLGVSQRGITVSTVGLVPAMLRFADEGFKCRLAV 240 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++LR+ LVP+N ++ + ++DA Y + RR++ EY ++K IND A Sbjct: 241 SLHAPDDELRDTLVPVNTRWKVREVLDAAWEY-AEKSGRRVSIEYALIKDINDQAWRADL 299 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++LKG +NLIP NP PG ++ S +D F ++ G +R RG +I A Sbjct: 300 LGRLLKGRRVHVNLIPLNPTPGSKWTASRPEDEKAFVAALEAHGVPVTVRDTRGQEIDGA 359 Query: 362 CGQLKS 367 CGQL + Sbjct: 360 CGQLAA 365 >gi|314978904|gb|EFT22998.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL072PA2] gi|315089293|gb|EFT61269.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL072PA1] Length = 405 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 124/370 (33%), Positives = 188/370 (50%), Gaps = 33/370 (8%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQHFSIIYP 73 EE +A+ G+P R QI ++ R D +D+ + R + + F ++ Sbjct: 49 EERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWFPVLLT 104 Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP----EKSRGTLCVSSQVGCSLTCS 129 ++ + T K L R G VE +Y P +R TLC+SSQ GC + C Sbjct: 105 KVSQQSCDRGTTVKTLWRLHG---GALVESVLMYYPATRHSAARATLCLSSQAGCGMACP 161 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 FC TG + RN++ EI+ QVL A L+ G+ PG ++ NIV MGM Sbjct: 162 FCATGQGGIQRNMSTAEIVSQVLAANRLIAAGEVPGASG-----------RVHNIVFMGM 210 Query: 188 GEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 GEP+ N+ +V ++ A G+ S R +TLST G VP I + +E I V LA+SLH Sbjct: 211 GEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVTLAVSLH 270 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++LR+ L+P+NR++ ++ L+DA HY RR++ EY ++K IND A L + Sbjct: 271 APDDELRDELIPVNRRWKVDELLDAAWHY-AEKTKRRVSIEYALMKDINDQADRAAVLAR 329 Query: 305 ILK----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 ++ A +NLIP NP PG + S +D F E ++R +R RG +I Sbjct: 330 QIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTRGSEIDG 389 Query: 361 ACGQLKSLSK 370 ACGQL ++ + Sbjct: 390 ACGQLAAVGR 399 >gi|289428733|ref|ZP_06430416.1| 23S rRNA m2A2503 methyltransferase [Propionibacterium acnes J165] gi|289158131|gb|EFD06351.1| 23S rRNA m2A2503 methyltransferase [Propionibacterium acnes J165] Length = 376 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 124/370 (33%), Positives = 188/370 (50%), Gaps = 33/370 (8%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQHFSIIYP 73 EE +A+ G+P R QI ++ R D +D+ + R + + F ++ Sbjct: 20 EERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWFPVLLT 75 Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP----EKSRGTLCVSSQVGCSLTCS 129 ++ + T K L R G VE +Y P +R TLC+SSQ GC + C Sbjct: 76 KVSQQSCDRGTTVKTLWRLHG---GALVESVLMYYPATRHSAARATLCLSSQAGCGMACP 132 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 FC TG + RN++ EI+ QVL A L+ G+ PG ++ NIV MGM Sbjct: 133 FCATGQGGIQRNMSTAEIVSQVLAANRLIAAGEVPGASG-----------RVHNIVFMGM 181 Query: 188 GEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 GEP+ N+ +V ++ A G+ S R +TLST G VP I + +E I V LA+SLH Sbjct: 182 GEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVTLAVSLH 241 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++LR+ L+P+NR++ ++ L+DA HY RR++ EY ++K IND A L + Sbjct: 242 APDDELRDELIPVNRRWKVDELLDAAWHY-AEKTKRRVSIEYALMKDINDQADRAAVLAR 300 Query: 305 ILK----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 ++ A +NLIP NP PG + S +D F E ++R +R RG +I Sbjct: 301 QIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTRGSEIDG 360 Query: 361 ACGQLKSLSK 370 ACGQL ++ + Sbjct: 361 ACGQLAAVGR 370 >gi|15842421|ref|NP_337458.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium tuberculosis CDC1551] gi|31794056|ref|NP_856549.1| hypothetical protein Mb2904c [Mycobacterium bovis AF2122/97] gi|121638761|ref|YP_978985.1| hypothetical protein BCG_2901c [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148824069|ref|YP_001288823.1| hypothetical protein TBFG_12894 [Mycobacterium tuberculosis F11] gi|215404854|ref|ZP_03417035.1| hypothetical protein Mtub0_14428 [Mycobacterium tuberculosis 02_1987] gi|215412721|ref|ZP_03421433.1| hypothetical protein Mtub9_15195 [Mycobacterium tuberculosis 94_M4241A] gi|215447142|ref|ZP_03433894.1| hypothetical protein MtubT_14832 [Mycobacterium tuberculosis T85] gi|218754632|ref|ZP_03533428.1| hypothetical protein MtubG1_14859 [Mycobacterium tuberculosis GM 1503] gi|224991253|ref|YP_002645942.1| hypothetical protein JTY_2896 [Mycobacterium bovis BCG str. Tokyo 172] gi|253798032|ref|YP_003031033.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium tuberculosis KZN 1435] gi|254232975|ref|ZP_04926302.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|254365521|ref|ZP_04981566.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|254551949|ref|ZP_05142396.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187898|ref|ZP_05765372.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium tuberculosis CPHL_A] gi|260206195|ref|ZP_05773686.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium tuberculosis K85] gi|289448546|ref|ZP_06438290.1| cfr family radical SAM enzyme [Mycobacterium tuberculosis CPHL_A] gi|289553331|ref|ZP_06442541.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289575585|ref|ZP_06455812.1| cfr family radical SAM enzyme [Mycobacterium tuberculosis K85] gi|289746679|ref|ZP_06506057.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium tuberculosis 02_1987] gi|289763057|ref|ZP_06522435.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|294994027|ref|ZP_06799718.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium tuberculosis 210] gi|297635496|ref|ZP_06953276.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium tuberculosis KZN 4207] gi|297732495|ref|ZP_06961613.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium tuberculosis KZN R506] gi|298526349|ref|ZP_07013758.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|306781073|ref|ZP_07419410.1| hypothetical protein TMBG_03023 [Mycobacterium tuberculosis SUMu002] gi|306785712|ref|ZP_07424034.1| hypothetical protein TMCG_02130 [Mycobacterium tuberculosis SUMu003] gi|306789752|ref|ZP_07428074.1| hypothetical protein TMDG_00071 [Mycobacterium tuberculosis SUMu004] gi|306794566|ref|ZP_07432868.1| hypothetical protein TMEG_02147 [Mycobacterium tuberculosis SUMu005] gi|306798807|ref|ZP_07437109.1| hypothetical protein TMFG_00076 [Mycobacterium tuberculosis SUMu006] gi|306804654|ref|ZP_07441322.1| hypothetical protein TMHG_02085 [Mycobacterium tuberculosis SUMu008] gi|306808847|ref|ZP_07445515.1| hypothetical protein TMGG_02414 [Mycobacterium tuberculosis SUMu007] gi|306968947|ref|ZP_07481608.1| hypothetical protein TMIG_02382 [Mycobacterium tuberculosis SUMu009] gi|313659828|ref|ZP_07816708.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium tuberculosis KZN V2475] gi|61250932|sp|P0A644|RLMN_MYCTU RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|61250933|sp|P0A645|RLMN_MYCBO RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829812|sp|A1KMM4|RLMN_MYCBP RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829852|sp|A5U6N5|RLMN_MYCTA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807189|sp|C1AFZ5|RLMN_MYCBT RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|13882723|gb|AAK47272.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551] gi|31619651|emb|CAD96591.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97] gi|121494409|emb|CAL72890.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124602034|gb|EAY61044.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|134151034|gb|EBA43079.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|148722596|gb|ABR07221.1| conserved hypothetical protein [Mycobacterium tuberculosis F11] gi|224774368|dbj|BAH27174.1| hypothetical protein JTY_2896 [Mycobacterium bovis BCG str. Tokyo 172] gi|253319535|gb|ACT24138.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium tuberculosis KZN 1435] gi|289421504|gb|EFD18705.1| cfr family radical SAM enzyme [Mycobacterium tuberculosis CPHL_A] gi|289437963|gb|EFD20456.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289540016|gb|EFD44594.1| cfr family radical SAM enzyme [Mycobacterium tuberculosis K85] gi|289687207|gb|EFD54695.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium tuberculosis 02_1987] gi|289710563|gb|EFD74579.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|298496143|gb|EFI31437.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308326123|gb|EFP14974.1| hypothetical protein TMBG_03023 [Mycobacterium tuberculosis SUMu002] gi|308329626|gb|EFP18477.1| hypothetical protein TMCG_02130 [Mycobacterium tuberculosis SUMu003] gi|308333765|gb|EFP22616.1| hypothetical protein TMDG_00071 [Mycobacterium tuberculosis SUMu004] gi|308337159|gb|EFP26010.1| hypothetical protein TMEG_02147 [Mycobacterium tuberculosis SUMu005] gi|308340969|gb|EFP29820.1| hypothetical protein TMFG_00076 [Mycobacterium tuberculosis SUMu006] gi|308344802|gb|EFP33653.1| hypothetical protein TMGG_02414 [Mycobacterium tuberculosis SUMu007] gi|308348750|gb|EFP37601.1| hypothetical protein TMHG_02085 [Mycobacterium tuberculosis SUMu008] gi|308353451|gb|EFP42302.1| hypothetical protein TMIG_02382 [Mycobacterium tuberculosis SUMu009] gi|323718490|gb|EGB27661.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium tuberculosis CDC1551A] gi|326904495|gb|EGE51428.1| radical SAM protein [Mycobacterium tuberculosis W-148] gi|328457806|gb|AEB03229.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 4207] Length = 364 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 125/360 (34%), Positives = 188/360 (52%), Gaps = 36/360 (10%) Query: 19 EALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV-- 76 A+ ++G+P R Q+ Y R I D + M+D+ VR ++ ++P ++ Sbjct: 29 SAVAELGLPA----FRAKQLAHQYYGRLIADPRQMTDLPAAVR---DRIAGAMFPNLLTA 81 Query: 77 DEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134 I+CD TRK L R + G + E+V + R T+C+SSQ GC + C FC TG Sbjct: 82 SADITCDAGQTRKTLWR----AVDGTM-FESVLMRYPRRNTVCISSQAGCGMACPFCATG 136 Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194 L RNL+ EIL QV + L D G ++SN+V MGMGEPL N+ Sbjct: 137 QGGLTRNLSTAEILEQVRAGAAALRD-------------DFGDRLSNVVFMGMGEPLANY 183 Query: 195 DNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLR 251 V ++ A G S R +T+ST G P I + + +GV LA+SLHA + LR Sbjct: 184 ARVLAAVQRITARPPSGFGISARAVTVSTVGLAPAIRNLADARLGVTLALSLHAPDDGLR 243 Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---G 308 + LVP+N ++ + +DA R+Y ++ RR++ EY +++ +ND P A L K L G Sbjct: 244 DTLVPVNNRWRISEALDAARYYANVTG-RRVSIEYALIRDVNDQPWRADLLGKRLHRVLG 302 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 A +NLIP NP PG ++ S + F + ++ G S +R RG +I AACGQL ++ Sbjct: 303 PLAHVNLIPLNPTPGSDWDASPKPVEREFVKRVRAKGVSCTVRDTRGREISAACGQLAAV 362 >gi|50842992|ref|YP_056219.1| hypothetical protein PPA1514 [Propionibacterium acnes KPA171202] gi|81611434|sp|Q6A7K4|RLMN_PROAC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|50840594|gb|AAT83261.1| conserved protein [Propionibacterium acnes KPA171202] gi|313763570|gb|EFS34934.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL013PA1] gi|313773509|gb|EFS39475.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL074PA1] gi|313793963|gb|EFS41987.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL110PA1] gi|313801350|gb|EFS42601.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL110PA2] gi|313807970|gb|EFS46451.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL087PA2] gi|313811561|gb|EFS49275.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL083PA1] gi|313819539|gb|EFS57253.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL046PA2] gi|313822138|gb|EFS59852.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL036PA1] gi|313823628|gb|EFS61342.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL036PA2] gi|313825952|gb|EFS63666.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL063PA1] gi|313831301|gb|EFS69015.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL007PA1] gi|313834912|gb|EFS72626.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL056PA1] gi|313839929|gb|EFS77643.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL086PA1] gi|314914724|gb|EFS78555.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL005PA4] gi|314919314|gb|EFS83145.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL050PA1] gi|314920776|gb|EFS84607.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL050PA3] gi|314924723|gb|EFS88554.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL036PA3] gi|314930455|gb|EFS94286.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL067PA1] gi|314954388|gb|EFS98794.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL027PA1] gi|314957479|gb|EFT01582.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL002PA1] gi|314962106|gb|EFT06207.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL002PA2] gi|314963685|gb|EFT07785.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL082PA1] gi|314968487|gb|EFT12585.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL037PA1] gi|314974177|gb|EFT18273.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL053PA1] gi|314976533|gb|EFT20628.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL045PA1] gi|314984352|gb|EFT28444.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL005PA1] gi|314986542|gb|EFT30634.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL005PA2] gi|314990901|gb|EFT34992.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL005PA3] gi|315079535|gb|EFT51528.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL053PA2] gi|315083603|gb|EFT55579.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL027PA2] gi|315087120|gb|EFT59096.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL002PA3] gi|315095316|gb|EFT67292.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL038PA1] gi|315100320|gb|EFT72296.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL046PA1] gi|315106754|gb|EFT78730.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL030PA1] gi|327328421|gb|EGE70183.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL096PA2] gi|327329713|gb|EGE71469.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL096PA3] gi|327444208|gb|EGE90862.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL043PA2] gi|327444913|gb|EGE91567.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL043PA1] gi|327446398|gb|EGE93052.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL013PA2] gi|327452014|gb|EGE98668.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL092PA1] gi|327454949|gb|EGF01604.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL087PA3] gi|327457765|gb|EGF04420.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL083PA2] gi|328755218|gb|EGF68834.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL087PA1] gi|328758303|gb|EGF71919.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL025PA2] gi|328760026|gb|EGF73607.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL099PA1] gi|332675942|gb|AEE72758.1| ribosomal RNA large subunit methyltransferase N [Propionibacterium acnes 266] Length = 405 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 124/370 (33%), Positives = 188/370 (50%), Gaps = 33/370 (8%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQHFSIIYP 73 EE +A+ G+P R QI ++ R D +D+ + R + + F ++ Sbjct: 49 EERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWFPVLLT 104 Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP----EKSRGTLCVSSQVGCSLTCS 129 ++ + T K L R G VE +Y P +R TLC+SSQ GC + C Sbjct: 105 KVSQQSCDRGTTVKTLWRLHG---GALVESVLMYYPATRHSAARATLCLSSQAGCGMACP 161 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 FC TG + RN++ EI+ QVL A L+ G+ PG ++ NIV MGM Sbjct: 162 FCATGQGGIQRNMSTAEIVSQVLAANRLIAAGEVPGASG-----------RVHNIVFMGM 210 Query: 188 GEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 GEP+ N+ +V ++ A G+ S R +TLST G VP I + +E I V LA+SLH Sbjct: 211 GEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVTLAVSLH 270 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++LR+ L+P+NR++ ++ L+DA HY RR++ EY ++K IND A L + Sbjct: 271 APDDELRDELIPVNRRWKVDELLDAAWHY-AEKTKRRVSIEYALMKDINDQADRAAVLAR 329 Query: 305 ILK----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 ++ A +NLIP NP PG + S +D F E ++R +R RG +I Sbjct: 330 QIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTRGSEIDG 389 Query: 361 ACGQLKSLSK 370 ACGQL ++ + Sbjct: 390 ACGQLAAVGR 399 >gi|261414747|ref|YP_003248430.1| radical SAM enzyme, Cfr family [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371203|gb|ACX73948.1| radical SAM enzyme, Cfr family [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327425|gb|ADL26626.1| 23S rRNA m2A2503 methyltransferase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 357 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 113/333 (33%), Positives = 178/333 (53%), Gaps = 13/333 (3%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93 R QI KW++ + +R + M +IS +R + + F++ + +S DGT KWL Sbjct: 28 RADQIQKWLFCQQVRSYDEMVNISPALREKMAKQFTLCGLKEDQRSVSVDGTVKWLFE-- 85 Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153 IETV IP R ++CVS+QVGC++ C+FC T RNL A EIL +++ Sbjct: 86 ---TEDGHHIETVMIPANGRYSVCVSTQVGCAMNCAFCRTAKMGFTRNLEAGEILEEIIN 142 Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213 L D G + EG V +++NI+ MGMGEPL N +NV + + + Sbjct: 143 VNWYLKD-NGFMNEEGGVA-----QVTNIIFMGMGEPLNNLENVHRVCCTLHNQKLFNMG 196 Query: 214 KRRITLSTSGFVPNIAR-VGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 +R+T+STSG VP I V LA+SL++ +N+ R+ ++P+N+ +P+E L++A Sbjct: 197 AKRMTVSTSGVVPKIKELVDRNTPCCLAVSLNSTNNEYRSSVMPVNKTWPIEKLLEAVDE 256 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y ++ +TFE+V+++ I +P+ A LI+I K+N I N + Sbjct: 257 YIRRTD-NYVTFEFVLIQNITCTPKAAKELIRICAPRRVKVNAIVLNDGDDPTLHAPTPE 315 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 ++ F ++ + IR PRG DILAACGQL Sbjct: 316 EVEDFLAAVRAAEIQITIRNPRGRDILAACGQL 348 >gi|289426335|ref|ZP_06428078.1| 23S rRNA m2A2503 methyltransferase [Propionibacterium acnes SK187] gi|295131063|ref|YP_003581726.1| 23S rRNA m2A2503 methyltransferase [Propionibacterium acnes SK137] gi|289153063|gb|EFD01781.1| 23S rRNA m2A2503 methyltransferase [Propionibacterium acnes SK187] gi|291376435|gb|ADE00290.1| 23S rRNA m2A2503 methyltransferase [Propionibacterium acnes SK137] Length = 406 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 124/370 (33%), Positives = 188/370 (50%), Gaps = 33/370 (8%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQHFSIIYP 73 EE +A+ G+P R QI ++ R D +D+ + R + + F ++ Sbjct: 50 EERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWFPVLLT 105 Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP----EKSRGTLCVSSQVGCSLTCS 129 ++ + T K L R G VE +Y P +R TLC+SSQ GC + C Sbjct: 106 KVSQQSCDRGTTVKTLWRLHG---GALVESVLMYYPATRHSAARATLCLSSQAGCGMACP 162 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 FC TG + RN++ EI+ QVL A L+ G+ PG ++ NIV MGM Sbjct: 163 FCATGQGGIQRNMSTAEIVSQVLAANRLIAAGEVPGASG-----------RVHNIVFMGM 211 Query: 188 GEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 GEP+ N+ +V ++ A G+ S R +TLST G VP I + +E I V LA+SLH Sbjct: 212 GEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVTLAVSLH 271 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++LR+ L+P+NR++ ++ L+DA HY RR++ EY ++K IND A L + Sbjct: 272 APDDELRDELIPVNRRWKVDELLDAAWHY-AEKTKRRVSIEYALMKDINDQADRAAVLAR 330 Query: 305 ILK----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 ++ A +NLIP NP PG + S +D F E ++R +R RG +I Sbjct: 331 QIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTRGSEIDG 390 Query: 361 ACGQLKSLSK 370 ACGQL ++ + Sbjct: 391 ACGQLAAVGR 400 >gi|260578946|ref|ZP_05846849.1| Cfr family radical SAM enzyme [Corynebacterium jeikeium ATCC 43734] gi|258602920|gb|EEW16194.1| Cfr family radical SAM enzyme [Corynebacterium jeikeium ATCC 43734] Length = 345 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 124/365 (33%), Positives = 193/365 (52%), Gaps = 41/365 (11%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 E L+E + ++G+P + R QI + Y R D M+D+ + R + + ++PE Sbjct: 7 ETLKERVQELGLP----KFRADQIRRQYYGRLQGDPMEMTDLPESKRAAVKE---ALFPE 59 Query: 75 IVDEKISCDG----TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130 ++ + D TRK L R + +E+V + R TLC+SSQ GC + C F Sbjct: 60 LMQPMRNMDADDGETRKTLWRLHDGTM-----LESVLMRYPGRATLCISSQAGCGMACPF 114 Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 C TG L RNL+ E++ Q A S + + G ++SNIV MGMGEP Sbjct: 115 CATGQGGLDRNLSVGEMVEQARAAASTMQEEGG--------------RLSNIVFMGMGEP 160 Query: 191 LCNF----DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHA 245 L N+ + ++K + A D G+ S+R IT+ST G P I ++ EE+ V LA+SLH Sbjct: 161 LANYKRVVETIRKVSAPAPDGFGI--SQRNITVSTVGLAPAIRKLADEEMKVRLAVSLHT 218 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++LR+ LVP+N ++ +E ++DA R+Y S RR++ EY +++ +ND P A L K Sbjct: 219 PDDELRDELVPVNNRWSVEEVLDAARYYADTS-GRRVSIEYALIRDMNDQPWRADLLGKK 277 Query: 306 LK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 L+ G +NLIP NP PG ++ S + F ++ G +R +G +I AAC Sbjct: 278 LRGALGTKVHVNLIPLNPTPGSKWDASPKDRQDEFVRRVEAQGVPCTVRDTKGQEIAAAC 337 Query: 363 GQLKS 367 GQL + Sbjct: 338 GQLAA 342 >gi|118617647|ref|YP_905979.1| hypothetical protein MUL_2078 [Mycobacterium ulcerans Agy99] gi|205829818|sp|A0PQ89|RLMN_MYCUA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|118569757|gb|ABL04508.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] Length = 364 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 123/358 (34%), Positives = 188/358 (52%), Gaps = 36/358 (10%) Query: 20 ALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD-- 77 A+ +G+P R Q+ Y R I D + M+D+ VR +Q ++P ++ Sbjct: 30 AVAALGLPP----FRAKQLAHQYYGRLIADPRQMTDLPAAVR---DQIAETMFPNLLTAA 82 Query: 78 EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135 +++CD TRK L R G V +E+V + R T+C+SSQ GC + C FC TG Sbjct: 83 REVTCDAGQTRKTLWR----ATDG-VTVESVLMRYPQRNTVCISSQAGCGMACPFCATGQ 137 Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195 L RNL+ EI+ QV A + L D G ++SN+V MG+GEPL N+ Sbjct: 138 GGLTRNLSTAEIVEQVRAAAAALRD-------------EFGDRLSNVVFMGLGEPLANYA 184 Query: 196 NVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252 V ++ ++ G S R +T+ST G P I ++ +E +GV LA+SLHA ++LR+ Sbjct: 185 RVLAAVRRITEPPPTGFGISARSVTVSTVGLAPAIRKLADERLGVTLALSLHAPDDELRD 244 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA- 311 LVP+N ++ + ++A HY RR++ EY +++ +ND P A L K L G Sbjct: 245 TLVPVNNRWKISEALEAA-HYYAEVTGRRVSVEYALIREVNDQPWRADLLGKRLHGALGP 303 Query: 312 --KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 +NLIP NP PG ++ S + F + ++ G S +R RG +I AACGQL + Sbjct: 304 LVHVNLIPLNPTPGSDWDASPKPVEREFVKRVRAQGVSCTVRDTRGREISAACGQLAA 361 >gi|313829419|gb|EFS67133.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL063PA2] gi|315108996|gb|EFT80972.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL030PA2] Length = 418 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 124/370 (33%), Positives = 188/370 (50%), Gaps = 33/370 (8%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQHFSIIYP 73 EE +A+ G+P R QI ++ R D +D+ + R + + F ++ Sbjct: 62 EERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWFPVLLT 117 Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP----EKSRGTLCVSSQVGCSLTCS 129 ++ + T K L R G VE +Y P +R TLC+SSQ GC + C Sbjct: 118 KVSQQSCDRGTTVKTLWRLHG---GALVESVLMYYPATRHSAARATLCLSSQAGCGMACP 174 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 FC TG + RN++ EI+ QVL A L+ G+ PG ++ NIV MGM Sbjct: 175 FCATGQGGIQRNMSTAEIVSQVLAANRLIAAGEVPGASG-----------RVHNIVFMGM 223 Query: 188 GEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 GEP+ N+ +V ++ A G+ S R +TLST G VP I + +E I V LA+SLH Sbjct: 224 GEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVTLAVSLH 283 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++LR+ L+P+NR++ ++ L+DA HY RR++ EY ++K IND A L + Sbjct: 284 APDDELRDELIPVNRRWKVDELLDAAWHY-AEKTKRRVSIEYALMKDINDQADRAAVLAR 342 Query: 305 ILK----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 ++ A +NLIP NP PG + S +D F E ++R +R RG +I Sbjct: 343 QIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTRGSEIDG 402 Query: 361 ACGQLKSLSK 370 ACGQL ++ + Sbjct: 403 ACGQLAAVGR 412 >gi|320106559|ref|YP_004182149.1| radical SAM enzyme, Cfr family [Terriglobus saanensis SP1PR4] gi|319925080|gb|ADV82155.1| radical SAM enzyme, Cfr family [Terriglobus saanensis SP1PR4] Length = 420 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 136/414 (32%), Positives = 205/414 (49%), Gaps = 79/414 (19%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-L 63 +K +L GM EL E + G ++ R R Q+W +Y + + ++ + +R L Sbjct: 23 QKIALFGMALPELIERMGAWG--EKPYRAR--QVWDALYKQRVAALDEITVLPLALRERL 78 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-------------- 109 + I PE+V S DGT ++L+R + G +ETV++P Sbjct: 79 ATEGVEIGLPEMVQTATSVDGTERYLMRM----VDGET-VETVWMPDGDGGERGDGSEAA 133 Query: 110 -EKS---------------------------------RGTLCVSSQVGCSLTCSFCYTGT 135 E+S R T+C+SSQVGC++ C FC T Sbjct: 134 VEESDEVVTADEAVDKTNGYKKPDKRNWGALAEKGYRRATICISSQVGCAVNCQFCLTAK 193 Query: 136 QKLVRNLTAEEILLQV--LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 + RNLTA EI QV +L R + +G+ N+V MGMGEP N Sbjct: 194 LGIKRNLTAGEIAGQVAAVLNRHSV---------------KMGKDRINLVFMGMGEPFLN 238 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252 +D S+ + + +G+ S R+T+STSG P+I R E + LA+SL+A ++ +R Sbjct: 239 YDAFMDSVRLLVEGVGIPDS--RMTVSTSGIEPSIRRFATETVRPKLALSLNASNDAVRT 296 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312 ++PI +K+ + ML+DA + P + +TFEYVML G+ND P+ A ++ +LKG+ AK Sbjct: 297 EIMPITKKWNIAMLLDAVKTIP-MGKRDWVTFEYVMLGGVNDQPQHAREVLALLKGMHAK 355 Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +NLI +NP PG Y D + F + + G + IR PRG DI AACGQLK Sbjct: 356 VNLIVWNPGPGIAYSQPDPDAVAVFQKMMIDGGMPTYIRRPRGRDIYAACGQLK 409 >gi|68536246|ref|YP_250951.1| hypothetical protein jk1169 [Corynebacterium jeikeium K411] gi|123650875|sp|Q4JV24|RLMN_CORJK RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|68263845|emb|CAI37333.1| conserved hypothetical protein [Corynebacterium jeikeium K411] Length = 365 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 124/365 (33%), Positives = 193/365 (52%), Gaps = 41/365 (11%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 E L+E + ++G+P + R QI + Y R D M+D+ + R + + ++PE Sbjct: 27 ETLKERVQELGLP----KFRADQIRRQYYGRLQGDPMEMTDLPESKRAAVKE---ALFPE 79 Query: 75 IVDEKISCDG----TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130 ++ + D TRK L R + +E+V + R TLC+SSQ GC + C F Sbjct: 80 LMQPMRNMDADDGETRKTLWRLHDGTM-----LESVLMRYPGRATLCISSQAGCGMACPF 134 Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 C TG L RNL+ E++ Q A S + + G ++SNIV MGMGEP Sbjct: 135 CATGQGGLDRNLSVGEMVEQARAAASTMQE--------------EGGRLSNIVFMGMGEP 180 Query: 191 LCNF----DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHA 245 L N+ + ++K + A D G+ S+R IT+ST G P I ++ EE+ V LA+SLH Sbjct: 181 LANYKRVVETIRKVSAPAPDGFGI--SQRNITVSTVGLAPAIRKLADEEMKVRLAVSLHT 238 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++LR+ LVP+N ++ +E ++DA R+Y S RR++ EY +++ +ND P A L K Sbjct: 239 PDDELRDELVPVNNRWSVEEVLDAARYYADTS-GRRVSIEYALIRDMNDQPWRADLLGKK 297 Query: 306 LK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 L+ G +NLIP NP PG ++ S + F ++ G +R +G +I AAC Sbjct: 298 LRGALGTKVHVNLIPLNPTPGSKWDASPKDRQDEFVRRVEAQGVPCTVRDTKGQEIAAAC 357 Query: 363 GQLKS 367 GQL + Sbjct: 358 GQLAA 362 >gi|328752153|gb|EGF65769.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL020PA1] Length = 405 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 124/370 (33%), Positives = 188/370 (50%), Gaps = 33/370 (8%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQHFSIIYP 73 EE +A+ G+P R QI ++ R D +D+ + R + + F ++ Sbjct: 49 EERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWFPVLLT 104 Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE----KSRGTLCVSSQVGCSLTCS 129 ++ + T K L R G VE +Y P +R TLC+SSQ GC + C Sbjct: 105 KVSQQSCDRGTTVKTLWRLHG---GALVESVLMYYPATRHTAARATLCLSSQAGCGMACP 161 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 FC TG + RN++ EI+ QVL A L+ G+ PG ++ NIV MGM Sbjct: 162 FCATGQGGIQRNMSTAEIVSQVLAANRLIAAGEVPGASG-----------RVHNIVFMGM 210 Query: 188 GEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 GEP+ N+ +V ++ A G+ S R +TLST G VP I + +E I V LA+SLH Sbjct: 211 GEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVTLAVSLH 270 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++LR+ L+P+NR++ ++ L+DA HY RR++ EY ++K IND A L + Sbjct: 271 APDDELRDELIPVNRRWKVDELLDAAWHY-AEKTKRRVSIEYALMKDINDQADRAAVLAR 329 Query: 305 ILK----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 ++ A +NLIP NP PG + S +D F E ++R +R RG +I Sbjct: 330 QIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTRGSEIDG 389 Query: 361 ACGQLKSLSK 370 ACGQL ++ + Sbjct: 390 ACGQLAAVGR 399 >gi|172040504|ref|YP_001800218.1| hypothetical protein cur_0824 [Corynebacterium urealyticum DSM 7109] gi|171851808|emb|CAQ04784.1| conserved hypothetical protein [Corynebacterium urealyticum DSM 7109] Length = 370 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 126/374 (33%), Positives = 197/374 (52%), Gaps = 32/374 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 L + + E++EEA++++G+P + R Q++ Y R D M+D+ + R Sbjct: 16 LPPKHFADLTAEQVEEAVVELGLP----KFRAKQLYNQYYGRLEGDPLEMTDLPEASRQA 71 Query: 64 LNQHFSIIYPEIVD--EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119 + + ++P ++ K+ D TRK L R + +E+V + R TLC+S Sbjct: 72 VKEK---LFPALMTPLRKLDADDGETRKTLWRLHDGTL-----LESVLMRYPGRATLCIS 123 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 SQ GC + C FC TG L RNL+ EI+ QV A + D G V GR + Sbjct: 124 SQAGCGMACPFCATGQGGLDRNLSVGEIVEQVRNAARAMRD--------GEVAGIEGR-L 174 Query: 180 SNIVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIG 236 SNIV MGMGEPL N+ V +++ + G S+R +T+ST G P I ++ E++ Sbjct: 175 SNIVFMGMGEPLANYKRVVEAVRQITQPEPHGFGISQRNVTVSTVGLAPAIRKLADEDMS 234 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 V LA+SLH ++LR+ LVP+N ++ +E ++DA +Y S RR++ EY +++ IND P Sbjct: 235 VRLAVSLHTPDDELRDTLVPVNNRWSVEEVLDAAAYYAEKS-GRRVSIEYALIRDINDQP 293 Query: 297 RDALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353 A L K L G +NLIP NP PG ++ S ++ F + + G +R Sbjct: 294 WRADMLGKKLHKALGSKVHVNLIPLNPTPGSKWDASPKERQDEFVQRVIAQGVPCTVRDT 353 Query: 354 RGLDILAACGQLKS 367 +G +I AACGQL + Sbjct: 354 KGQEIAAACGQLAA 367 >gi|327334229|gb|EGE75943.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL097PA1] Length = 405 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 124/370 (33%), Positives = 188/370 (50%), Gaps = 33/370 (8%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQHFSIIYP 73 EE +A+ G+P R QI ++ R D +D+ + R + + F ++ Sbjct: 49 EERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWFPVLLT 104 Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP----EKSRGTLCVSSQVGCSLTCS 129 ++ + T K L R G VE +Y P +R TLC+SSQ GC + C Sbjct: 105 KVSQQSCDRGTTVKTLWRLHG---GALVESVLMYYPATRHSAARATLCLSSQAGCGMACP 161 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 FC TG + RN++ EI+ QVL A L+ G+ PG ++ NIV MGM Sbjct: 162 FCATGQGGIQRNMSTAEIVSQVLAANRLIAAGEVPGASG-----------RVHNIVFMGM 210 Query: 188 GEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 GEP+ N+ +V ++ A G+ S R +TLST G VP I + +E I V LA+SLH Sbjct: 211 GEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVTLAVSLH 270 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++LR+ L+P+NR++ ++ L+DA HY RR++ EY ++K IND A L + Sbjct: 271 APDDELRDELIPVNRRWKVDELLDAAWHY-AEKTKRRVSIEYALMKDINDQADRAAVLAR 329 Query: 305 ILK----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 ++ A +NLIP NP PG + S +D F E ++R +R RG +I Sbjct: 330 QIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTRGSEIDG 389 Query: 361 ACGQLKSLSK 370 ACGQL ++ + Sbjct: 390 ACGQLAAVGR 399 >gi|194476577|ref|YP_002048756.1| hypothetical protein PCC_0094 [Paulinella chromatophora] gi|171191584|gb|ACB42546.1| hypothetical protein PCC_0094 [Paulinella chromatophora] Length = 350 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 130/373 (34%), Positives = 191/373 (51%), Gaps = 36/373 (9%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 N L + L+GM + LE + G R QI +W+Y++G RD + ++ + + R Sbjct: 4 NALDRIPLLGMGQLALETWAVAHG----QAAFRGRQIHEWMYLKGERDIESITVLPKSWR 59 Query: 62 -HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 L+ + + + +IS DGT K LL+ IETV IP R T+CVSS Sbjct: 60 EQLIMANIQLGRSRELQRQISSDGTIKLLLQ----STSDSETIETVGIPTAQRLTVCVSS 115 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC + C FC TG L R+L EIL QVL R ++ R+ + Sbjct: 116 QAGCPMACQFCATGKGGLQRSLLTHEILDQVLSIRRVM-----------------DRRPT 158 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF---VPNIARVG----E 233 +IV MGMGEPL N + V +S+ +D G+ S+RRIT+ST G +P +A + + Sbjct: 159 HIVFMGMGEPLLNIEAVLESIQSLNDDFGI--SQRRITISTVGVPRTLPLLAELALKRLD 216 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 LA+SLHA + LR L+P Y L+ +++ CRHY ++ RR++FEY++L G+N Sbjct: 217 RAQFTLAVSLHAPNQSLREKLIPSATAYSLDNILEDCRHYLAIT-GRRVSFEYILLGGVN 275 Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353 D A L + G + +NLI +NP + + I F +K G S +R Sbjct: 276 DQTFHAEELADRVSGFQSHVNLIAYNPIDDEVFKRPNIFRIERFLSILKHRGLSVSLRAS 335 Query: 354 RGLDILAACGQLK 366 RGLD AACGQL+ Sbjct: 336 RGLDKNAACGQLR 348 >gi|320008274|gb|ADW03124.1| radical SAM enzyme, Cfr family [Streptomyces flavogriseus ATCC 33331] Length = 368 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 125/366 (34%), Positives = 186/366 (50%), Gaps = 29/366 (7%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L + +E +EA+ G R Q+ + + R D ++I R L + Sbjct: 22 LADLTPDERKEAVAATG----EKPFRAKQLSQHYFTRYAHDPAEWTNIPAASRDKLAE-- 75 Query: 69 SIIYPEIVD--EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 ++PE++ ISCD TRK L + + +E+V + R T+C+SSQ GC Sbjct: 76 -AMFPELMSVLRHISCDDDTTRKTLWKLHDGTL-----VESVLMRYPDRVTMCISSQAGC 129 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EI+ Q++ L D +P ++SNIV Sbjct: 130 GMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDGE---------VPGGPARLSNIVF 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 MGMGEPL N+ V ++ +D GL S+R IT+ST G VP + R +E LA+ Sbjct: 181 MGMGEPLANYKRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAV 240 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++LR+ LVP+N ++ + ++DA Y + RRI+ EY +++ IND Sbjct: 241 SLHAPDDELRDTLVPVNTRWKVREVLDAAWEY-AEKSGRRISIEYALIRDINDQAWRGDR 299 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++LKG +NLIP NP PG ++ S +D F E I R G +R RG +I A Sbjct: 300 LGRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIARHGVPVTVRDTRGQEIDGA 359 Query: 362 CGQLKS 367 CGQL + Sbjct: 360 CGQLAA 365 >gi|313836797|gb|EFS74511.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL037PA2] gi|314929795|gb|EFS93626.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL044PA1] gi|314972224|gb|EFT16321.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL037PA3] gi|328907651|gb|EGG27415.1| cfr family radical SAM enzyme [Propionibacterium sp. P08] Length = 414 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 129/376 (34%), Positives = 192/376 (51%), Gaps = 35/376 (9%) Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69 I + EE +A+ + +P R QI ++ R D +D+ + R + + Sbjct: 53 IDLSVEERAQAVKDLSLPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAW- 107 Query: 70 IIYPEIVDE--KISCD--GTRKWLLRFPARCIGGPVEIETVYIP----EKSRGTLCVSSQ 121 +P ++ E + SCD T K L R G VE +Y P +R TLC+SSQ Sbjct: 108 --FPALLTEVSRQSCDRGTTVKTLWRLHG---GALVESVLMYYPATRHSAARTTLCLSSQ 162 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC + C FC TG + RN++ EI+ QVL A L I IP ++ N Sbjct: 163 AGCGMACPFCATGQGGIQRNMSTAEIVSQVLAANRL---------IAAGEIPGASGRVHN 213 Query: 182 IVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238 IV MGMGEP+ N+ +V + A G+ S R +T+ST G VP I + EE I V Sbjct: 214 IVFMGMGEPMANYRSVLTVIRTLTADGPDGMGMSARALTVSTVGLVPRIKALTEERIPVT 273 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLHA ++LR+ L+P+NR++ ++ L+DA HY S RR++ EY ++K IND Sbjct: 274 LAVSLHAPDDELRDELIPVNRRWKVDELLDAAWHYAEKSK-RRVSIEYALMKDINDQADR 332 Query: 299 ALNLIKILK----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 A L + ++ A +NLIP NP PG + S ++D F E ++R +R R Sbjct: 333 AAVLARQIRRRGDWTWAHVNLIPLNPTPGSRWTASRREDQDAFVETLERWKIPVTVRDTR 392 Query: 355 GLDILAACGQLKSLSK 370 G +I ACGQL ++ + Sbjct: 393 GSEIDGACGQLAAVGR 408 >gi|29829163|ref|NP_823797.1| hypothetical protein SAV_2621 [Streptomyces avermitilis MA-4680] gi|81719951|sp|Q82JY3|RLMN_STRAW RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|29606269|dbj|BAC70332.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 368 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 126/359 (35%), Positives = 179/359 (49%), Gaps = 23/359 (6%) Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75 E +EA+ IG R Q+ + + R D + +DI R L + + Sbjct: 29 ERKEAVAAIG----EKPFRAKQLSQHYFARYAHDPEQWTDIPAGSRAKLQEALLPDLMTV 84 Query: 76 VDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134 V D TRK L R + +E+V + R T+C+SSQ GC + C FC TG Sbjct: 85 VRHLSTDQDTTRKTLWRLFDGTL-----VESVLMRYPDRVTMCISSQAGCGMNCPFCATG 139 Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194 L RNL+ EI+ Q++ L D IP ++SNIV MGMGEPL N+ Sbjct: 140 QAGLDRNLSTGEIVHQIVDGMRALRDGE---------IPGGPARLSNIVFMGMGEPLANY 190 Query: 195 DNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLR 251 V ++ +D GL S+R IT+ST G VP I R +E LAISLHA ++LR Sbjct: 191 KRVVGAIRALTDPEPDGLGLSQRGITVSTVGLVPAIHRFADEGFKCRLAISLHAPDDELR 250 Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311 + LVP+N ++ + ++DA Y S RR++ EY +++ IND L ++LKG P Sbjct: 251 DTLVPVNTRWKVREVLDAGWEYAARSG-RRLSIEYALIRDINDQAWRGDRLGRMLKGRPV 309 Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 +NLIP NP PG ++ S +D F E I G +R RG +I ACGQL + + Sbjct: 310 HVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTVRDTRGQEIDGACGQLAATER 368 >gi|314923760|gb|EFS87591.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL001PA1] gi|314966226|gb|EFT10325.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL082PA2] gi|314981992|gb|EFT26085.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL110PA3] gi|315090903|gb|EFT62879.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL110PA4] gi|315095116|gb|EFT67092.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL060PA1] gi|315104345|gb|EFT76321.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL050PA2] gi|327328106|gb|EGE69875.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL103PA1] Length = 405 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 124/370 (33%), Positives = 188/370 (50%), Gaps = 33/370 (8%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQHFSIIYP 73 EE +A+ +G+P R QI ++ R D +D+ + R + + F ++ Sbjct: 49 EERVQAVKDLGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWFPVLLT 104 Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP----EKSRGTLCVSSQVGCSLTCS 129 ++ + T K L R G VE +Y P +R TLC+SSQ GC + C Sbjct: 105 KVSQQSCDRGTTVKTLWRLHG---GALVESVLMYYPATRHSAARTTLCLSSQAGCGMACP 161 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 FC TG + RN++ EI+ QVL A L+ G+ PG ++ NIV MGM Sbjct: 162 FCATGQGGIQRNMSTAEIVSQVLAANRLIAAGEVPGASG-----------RVHNIVFMGM 210 Query: 188 GEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 GEP+ N+ +V ++ A G+ S R +TLST G VP I + +E I V LA+SLH Sbjct: 211 GEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVTLAVSLH 270 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++LR+ L+P+NR++ ++ L+DA HY RR++ EY ++K IND A L + Sbjct: 271 APDDELRDELIPVNRRWKVDELLDAAWHY-AEKTKRRVSIEYALMKDINDQADRAAVLAR 329 Query: 305 ILK----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 ++ A +NLIP NP PG + S D F E ++R +R RG +I Sbjct: 330 QIRRRGDWTWAHVNLIPLNPTPGSRWTASRPADQDAFVETLERWKIPVTVRDTRGSEIDG 389 Query: 361 ACGQLKSLSK 370 ACGQL ++ + Sbjct: 390 ACGQLAAVGR 399 >gi|299138881|ref|ZP_07032058.1| radical SAM enzyme, Cfr family [Acidobacterium sp. MP5ACTX8] gi|298599035|gb|EFI55196.1| radical SAM enzyme, Cfr family [Acidobacterium sp. MP5ACTX8] Length = 406 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 133/415 (32%), Positives = 207/415 (49%), Gaps = 82/415 (19%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR-HLLN 65 +L G EL E L G+ Q+ R R Q+++ +Y + + + ++ +SQE+R L + Sbjct: 2 HALFGKTLPELTE--LMAGLGQKPYRAR--QVFEALYKQRVGLVEDVTTLSQELRDRLTS 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS------------- 112 + F+I PEI S DGT ++L+R + +ETV++P+ Sbjct: 58 EGFAIGLPEIAQTAKSVDGTERYLMR-----MADGETVETVWMPDGDGGERGDGSEAAEE 112 Query: 113 --------------------------------------RGTLCVSSQVGCSLTCSFCYTG 134 R T+C+SSQVGC++ C FC T Sbjct: 113 ESAEVVVAEEAVDGGYWSRRGNGRDRSNFGTLAEQGFRRATICISSQVGCAVNCQFCLTA 172 Query: 135 TQKLVRNLTAEEILLQV--LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192 + RNLTA EI QV +L R + +G+ N+V MGMGEP Sbjct: 173 KLGIKRNLTAGEIAGQVAAVLNRHRI---------------QIGKDRINLVFMGMGEPFL 217 Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLR 251 N++ +S+ + + +G+ S R+T+STSG +P I A E + LA+SL+A ++ +R Sbjct: 218 NYEQFMQSVRVLVEGIGIPES--RMTVSTSGILPGIEAFAKETMRPKLALSLNASNDVVR 275 Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311 ++PI RK+ + L++A + P L +TFEYV+L +ND P A ++++L GI A Sbjct: 276 ERIMPITRKWNIAALLEAVQKIP-LRTREWVTFEYVLLGEVNDQPEHAREVLELLDGIRA 334 Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 K+NLI +NP PG +Y D+ F + + G ++ IR PRG DI AACGQLK Sbjct: 335 KVNLIVWNPGPGIDYHQPKPADVAVFQKMLIEGGIATYIRRPRGRDIYAACGQLK 389 >gi|229817667|ref|ZP_04447949.1| hypothetical protein BIFANG_02938 [Bifidobacterium angulatum DSM 20098] gi|229785456|gb|EEP21570.1| hypothetical protein BIFANG_02938 [Bifidobacterium angulatum DSM 20098] Length = 395 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 126/365 (34%), Positives = 190/365 (52%), Gaps = 24/365 (6%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 + M +E ++G+P + R Q+ Y + +D R ++ Sbjct: 46 FVDMSEDERIAKAKELGLP----KFRVKQLANHYYGHFDVNAAAFTDFPASKR---DEAA 98 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 S+ +PE++ E + ++ R G IE+V + +R TLC+SSQVGC + C Sbjct: 99 SVFFPELITEVTRQVADKGTTIKTLWRLFDGS-HIESVLMRYPTRSTLCISSQVGCGMGC 157 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG L RN++A EIL QV +A ++ D G V GR +SNIV MGMG Sbjct: 158 PFCATGQLGLTRNMSAGEILEQVRVAARMMQD--------GEVAGGPGR-LSNIVFMGMG 208 Query: 189 EPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 EP+ N+ +V ++ S G S R IT+ST G VP I ++ EE I V LA+SLHA Sbjct: 209 EPMGNYRSVLSAVRQISALPPQGFGISARNITVSTVGVVPGIRKLTEEGIPVRLAVSLHA 268 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 S++LR+ LVP+N+++ ++DA Y L+ RR++ EY +++GIND A L K Sbjct: 269 PSDELRDELVPMNKRFNTTAVLDAAHDY-WLATKRRVSIEYALMRGINDQAEHARLLAKR 327 Query: 306 LKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 L A +N IP NP G ++ S +D F + + +G ++ +R RG DI AC Sbjct: 328 LNHYGDDWAHVNPIPLNPIEGSKWTASKPEDEKRFLDILHAAGITATLRDTRGQDIDGAC 387 Query: 363 GQLKS 367 GQL + Sbjct: 388 GQLAA 392 >gi|302380492|ref|ZP_07268957.1| 23S rRNA m2A2503 methyltransferase [Finegoldia magna ACS-171-V-Col3] gi|302311435|gb|EFK93451.1| 23S rRNA m2A2503 methyltransferase [Finegoldia magna ACS-171-V-Col3] Length = 349 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 123/367 (33%), Positives = 196/367 (53%), Gaps = 31/367 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L M +EL+E + G R Q ++ I+ I + M++ S +R LNQ+ Sbjct: 7 LENMTVDELKEFFVNNG----EKPFRALQYFQAIHKNRIFNPDDMTNFSNNLRGKLNQYN 62 Query: 69 SIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 I I+ S D T+K+L+ I +ETV++ K+ ++C+S+Q+GC + Sbjct: 63 DIKNCSIIKRINSKLDNTKKYLIEMSDGNI-----VETVFMQYKTHTSICLSTQIGCKMG 117 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC + + VRNL E+ Q+ L + L DI +I+NIV+MG+ Sbjct: 118 CKFCASTKKSFVRNLQPYEMCAQIYLVENDL-------DI----------RINNIVLMGI 160 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAV 246 GEPL N+DNV + + + +D G S R ITLST G V I R+ ++IG+ + ISLH Sbjct: 161 GEPLDNYDNVSRFIDLITDKDGQDMSIRNITLSTCGLVDKIIRLADDDIGINITISLHNP 220 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ RN L+PI KY +E ++DAC +Y + RRI FEY +++ +NDS + L+ +L Sbjct: 221 FDNERNKLMPIGNKYSIEEILDACDYYFKKT-KRRIGFEYTVIENVNDSKKYMDKLVSLL 279 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 K +NLI NP D+ + F E + ++ ++ IR +G+DI ACGQL+ Sbjct: 280 KNRNCLLNLITLNPIEEFNQKSPDRFKMTEFMEYMNKNNVNTTIRRKQGIDIDGACGQLR 339 Query: 367 --SLSKR 371 +++KR Sbjct: 340 INNMTKR 346 >gi|225449545|ref|XP_002283725.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296086245|emb|CBI31686.3| unnamed protein product [Vitis vinifera] Length = 407 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 129/375 (34%), Positives = 196/375 (52%), Gaps = 40/375 (10%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH- 67 L+GM +EL++ L +G R Q+ IY R +++ Q S + Q R+ L + Sbjct: 45 LLGMSEQELQQLSLDLG----QQSYRGKQLHHLIYKRKVKEIQHFSQLPQAFRNDLQEGG 100 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRG----TLCVSSQV 122 + + I + DGT K L++ + +ETV IP E +G T CVSSQV Sbjct: 101 WRVGRSSIYQSVTAADGTVKLLIKLADNRL-----VETVGIPVEHDKGSFRLTACVSSQV 155 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L CSFC TG RNL EI+ QVL E+I ++++N+ Sbjct: 156 GCPLRCSFCATGKGGYSRNLQRHEIVEQVL----------AIEEI-------FKQRVTNV 198 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLA 240 V MGMGEP+ N +V ++ + + + +R IT+S+ G VPN + ++ LA Sbjct: 199 VFMGMGEPMLNLKSVIEAHRCLNKDVQI--GQRMITISSVG-VPNTIKKLASYKLQSTLA 255 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ISLHA + LR +VP + YPL+ ++ CR Y L +RR++FEY +L G+ND+ A+ Sbjct: 256 ISLHAPNQKLRETIVPSAKSYPLDAIMKDCRDY-FLETSRRVSFEYTLLAGVNDAVEHAI 314 Query: 301 NLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 L ++L G +NLIPFNP G E+ K + F+ ++ + +R RGLD Sbjct: 315 ELAELLHEWGPGYHVNLIPFNPIEGSEFQRPYNKAVQAFAGALESRKVTVSVRQTRGLDA 374 Query: 359 LAACGQLKSLSKRIP 373 AACGQL++ ++IP Sbjct: 375 SAACGQLRNEFQKIP 389 >gi|328956372|ref|YP_004373705.1| 23S rRNA m(2)A-2503 methyltransferase [Coriobacterium glomerans PW2] gi|328456696|gb|AEB07890.1| 23S rRNA m(2)A-2503 methyltransferase [Coriobacterium glomerans PW2] Length = 348 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 116/338 (34%), Positives = 176/338 (52%), Gaps = 30/338 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R +Q+ +W++ + F M+++ + R L + FS P + ++IS D TRK+LL F Sbjct: 30 FRATQVLEWLHKKNASSFDEMTNLPKSFRTQLAERFSFAVPRQIAQQISRDRTRKYLLEF 89 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 V +E V IP + + T C+S+Q GC + C+FC TG L R+ TA E++ QVL Sbjct: 90 -----SDGVSVEAVGIPGRGKLTACISTQAGCGMRCAFCATGLAGLARSCTAREMVDQVL 144 Query: 153 -LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 +AR DF +++++V MG GEP NFD ++L +D GL Sbjct: 145 HIAR----DF--------------NERVTSVVFMGQGEPFANFDETVRALRTLNDPRGLK 186 Query: 212 FSKRRITLSTSGFVPNI---ARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 R +T+ST G +P I A++ E+ LAISLH+ S RN L+P +KY L L + Sbjct: 187 IGARHLTVSTCGIIPGIRAFAKLPEQF--TLAISLHSASQQTRNQLMPGVKKYTLPRLYE 244 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 A + Y + RR T+E M++GIND+ + + +G +NLI + +P E Sbjct: 245 ALQEYVE-ATGRRPTYEIAMIEGINDTNPEMRAICDFCEGTLCHVNLIQLSDFPDSELHP 303 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 S + + + G + IR RG DI AACGQLK Sbjct: 304 SPLFKLEELQKRLTARGVQTTIRCSRGADIDAACGQLK 341 >gi|296393255|ref|YP_003658139.1| radical SAM enzyme, Cfr family [Segniliparus rotundus DSM 44985] gi|296180402|gb|ADG97308.1| radical SAM enzyme, Cfr family [Segniliparus rotundus DSM 44985] Length = 368 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 130/366 (35%), Positives = 186/366 (50%), Gaps = 36/366 (9%) Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75 EL +A+ +G R Q+ + Y R D + M+D+ R L + F P++ Sbjct: 27 ELRDAVAGLG----EKPFRAGQLARHYYTRLTVDPEAMTDVPAASRGALAEAF---LPDL 79 Query: 76 VD--EKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131 V + CD T K L R + +E+V + R TLCVSSQ GC + C FC Sbjct: 80 VTPARTMGCDRGETVKTLWRLHDGSL-----VESVLMAYADRVTLCVSSQAGCGMACPFC 134 Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191 TG L RNL+ EI+ QV LA D + R +SNIV MGMGEPL Sbjct: 135 ATGQGGLTRNLSTAEIVEQVRLAALAARDGK---------LAGGARHLSNIVFMGMGEPL 185 Query: 192 CNF----DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 N+ D V++ S A + G+ S+R + +ST G VP I R+ E + V LA+SLHA Sbjct: 186 ANYRRVLDAVRRITSPAPEGFGI--SQRSVVVSTVGLVPAIHRLANEGLSVTLAVSLHAP 243 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++LR+ LVP+N ++P+ ++ A + Y RR++ EY +++ +ND P A L +L Sbjct: 244 DDELRDTLVPVNTRWPVAEVLAAAKGY-AQQTGRRVSVEYALIRDVNDQPWRADLLGGLL 302 Query: 307 K---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 G A +NLIP NP PG E+ S + F ++ G S +R RG +I AACG Sbjct: 303 HEALGSLAHVNLIPLNPTPGSEWDASPPEAQREFVRRVRAKGVSCTVRDTRGQEIAAACG 362 Query: 364 QLKSLS 369 QL S Sbjct: 363 QLAGSS 368 >gi|333024150|ref|ZP_08452214.1| putative cfr family radical SAM enzyme [Streptomyces sp. Tu6071] gi|332744002|gb|EGJ74443.1| putative cfr family radical SAM enzyme [Streptomyces sp. Tu6071] Length = 369 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 128/362 (35%), Positives = 186/362 (51%), Gaps = 29/362 (8%) Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75 E +EA+ IG R Q+ + + R +D +DI R L + + PE+ Sbjct: 30 ERKEAVAAIG----EKPFRAKQLSQHYFARYAQDPAQWTDIPAAARGRLQE---ALLPEL 82 Query: 76 --VDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131 V ISCD TRK L R G + +E+V + R T+C+SSQ GC + C FC Sbjct: 83 MSVVRHISCDDDTTRKTLWRL----FDGTL-VESVLMRYPDRVTMCISSQAGCGMNCPFC 137 Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191 TG L RNL+A EI+ Q++ L D IP ++SNIV MGMGEPL Sbjct: 138 ATGQAGLDRNLSAAEIVHQIVEGMRALRDGE---------IPGGPARLSNIVFMGMGEPL 188 Query: 192 CNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248 N++ V ++ +D GL S+R IT+ST G VP I R +E LA+SLHA + Sbjct: 189 ANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAIHRFADEGFKCRLAVSLHAPDD 248 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 +LR+ LVP+N ++ + ++DA Y + RR++ EY +++ IND L ++LK Sbjct: 249 ELRDTLVPVNTRWKVREVLDAAWEY-AEKSGRRVSIEYALIRDINDQAWRGDLLGRLLKN 307 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 +NLIP NP PG ++ S +D F + I G +R RG +I ACGQL + Sbjct: 308 KRVHVNLIPLNPTPGSKWTASRPEDERAFVDAIAAHGVPVTVRDTRGQEIDGACGQLAAA 367 Query: 369 SK 370 + Sbjct: 368 ER 369 >gi|303232118|ref|ZP_07318821.1| 23S rRNA m2A2503 methyltransferase [Veillonella atypica ACS-049-V-Sch6] gi|302513224|gb|EFL55263.1| 23S rRNA m2A2503 methyltransferase [Veillonella atypica ACS-049-V-Sch6] Length = 348 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 120/343 (34%), Positives = 182/343 (53%), Gaps = 26/343 (7%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDG-TRKWLL 90 + R Q+ +IY R I FQ M+ + +R L+ + I P+++ + +S DG T+K LL Sbjct: 23 KFRAKQLIDYIYHRHIFVFQDMTQFPKNLRDWLDSNCIISIPKVITQSVSPDGKTQKLLL 82 Query: 91 RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150 IE V + + ++CVSSQVGC++ C FC + L R+L+ EI+ Q Sbjct: 83 ELTDHS-----RIEAVLMEQYYGNSVCVSSQVGCAMGCVFCASTQGGLFRDLSVSEIVGQ 137 Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210 V+L +L EDI +V+ MG GEPL N+DNV ++L + D M Sbjct: 138 VVLFSAL-----KQEDIHSLVV------------MGAGEPLQNYDNVLQALKLIHDPMTF 180 Query: 211 SFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 S R++T+ST G+VPNI ++ E++ + LA+SLHA +++ R ++P+ +Y L+ ++DA Sbjct: 181 DISYRKMTISTCGWVPNIYKLADEDLPITLALSLHATTDETRRKIMPVGSRYKLDEVLDA 240 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP-AKINLIPFNPWPGCEYLC 328 ++Y RRITFEY+++ IN S +A L I K P +NLIP N Sbjct: 241 VKYYYE-KTQRRITFEYILIDSINVSLEEAHELGNIGKAFPNCHVNLIPVNGNEHINLYK 299 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 K + F + + G S IR G I AACGQLK R Sbjct: 300 PSSKHMNIFKDIVASYGVSVTIRKEMGDAIQAACGQLKVAHGR 342 >gi|294631675|ref|ZP_06710235.1| cfr family radical SAM enzyme [Streptomyces sp. e14] gi|292835008|gb|EFF93357.1| cfr family radical SAM enzyme [Streptomyces sp. e14] Length = 368 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 128/362 (35%), Positives = 184/362 (50%), Gaps = 29/362 (8%) Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75 E +EA+ IG R Q+ + + R D + +DI R L + + PE+ Sbjct: 29 ERKEAVAAIG----EKPFRAKQLSQHYFARYAHDPEQWTDIPAGSREKLRE---ALLPEL 81 Query: 76 --VDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131 V +S D TRK L R G + +E+V + R T+C+SSQ GC + C FC Sbjct: 82 MSVVRHLSTDAGTTRKTLWRL----FDGTL-VESVLMRYPDRVTMCISSQAGCGMNCPFC 136 Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191 TG L RNL+ EI+ Q++ L D +P ++SNIV MGMGEPL Sbjct: 137 ATGQAGLDRNLSTAEIVHQIVDGMRALRDGE---------VPGGPARLSNIVFMGMGEPL 187 Query: 192 CNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248 N+ V ++ +D GL S+R +T+ST G VP I R +E LAISLHA + Sbjct: 188 ANYKRVVGAIRALTDPEPDGLGLSQRGVTVSTVGLVPAIHRFSDEGFKCRLAISLHAPDD 247 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 +LR+ LVP+N ++ + ++DA Y S RR++ EY +++ IND L ++LKG Sbjct: 248 ELRDTLVPVNTRWKVREVLDAGFEYAAKSG-RRLSIEYALIRDINDQAWRGDRLGRLLKG 306 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 P +N IP NP PG ++ S +D F E I G IR RG +I ACGQL + Sbjct: 307 RPVHVNCIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTIRDTRGQEIDGACGQLAAT 366 Query: 369 SK 370 + Sbjct: 367 ER 368 >gi|282854662|ref|ZP_06263997.1| 23S rRNA m2A2503 methyltransferase [Propionibacterium acnes J139] gi|282582244|gb|EFB87626.1| 23S rRNA m2A2503 methyltransferase [Propionibacterium acnes J139] Length = 376 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 124/370 (33%), Positives = 188/370 (50%), Gaps = 33/370 (8%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQHFSIIYP 73 EE +A+ +G+P R QI ++ R D +D+ + R + + F ++ Sbjct: 20 EERVQAVKDLGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWFPVLLT 75 Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP----EKSRGTLCVSSQVGCSLTCS 129 ++ + T K L R G VE +Y P +R TLC+SSQ GC + C Sbjct: 76 KVSQQSCDRGTTVKTLWRLHG---GALVESVLMYYPATRHSAARTTLCLSSQAGCGMACP 132 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 FC TG + RN++ EI+ QVL A L+ G+ PG ++ NIV MGM Sbjct: 133 FCATGQGGIQRNMSTAEIVSQVLAANRLIAAGEVPGASG-----------RVHNIVFMGM 181 Query: 188 GEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 GEP+ N+ +V ++ A G+ S R +TLST G VP I + +E I V LA+SLH Sbjct: 182 GEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVTLAVSLH 241 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++LR+ L+P+NR++ ++ L+DA HY RR++ EY ++K IND A L + Sbjct: 242 APDDELRDELIPVNRRWKVDELLDAAWHY-AEKTKRRVSIEYALMKDINDQADRAAVLAR 300 Query: 305 ILK----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 ++ A +NLIP NP PG + S D F E ++R +R RG +I Sbjct: 301 QIRRRGDWTWAHVNLIPLNPTPGSRWTASRPADQDAFVETLERWKIPVTVRDTRGSEIDG 360 Query: 361 ACGQLKSLSK 370 ACGQL ++ + Sbjct: 361 ACGQLAAVGR 370 >gi|46445973|ref|YP_007338.1| hypothetical protein pc0339 [Candidatus Protochlamydia amoebophila UWE25] gi|81627607|sp|Q6MED6|RLMN1_PARUW RecName: Full=Ribosomal RNA large subunit methyltransferase N 1; AltName: Full=23S rRNA m2A2503 methyltransferase 1 gi|46399614|emb|CAF23063.1| hypothetical protein pc0339 [Candidatus Protochlamydia amoebophila UWE25] Length = 358 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 104/270 (38%), Positives = 157/270 (58%), Gaps = 20/270 (7%) Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160 ++I++V IP ++ GTLC+SSQ+GC + C+FC TG L+RNLT +EIL Q+ +A+ L Sbjct: 92 LDIKSVLIPMQAGGTLCISSQIGCQMGCAFCETGRMGLLRNLTTQEILSQLFIAKFRL-- 149 Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLS 220 + NIV MGMGEP N+D V + I +DS G RIT+S Sbjct: 150 ---------------HFSVRNIVFMGMGEPFDNYDTVMHAFRILTDSHGFGLGNNRITIS 194 Query: 221 TSGFVPNIARVGEEIGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN 278 TSG + I R+ +E + LA+SL+A +++LRN L+PIN+KYPL+ L A + Sbjct: 195 TSGCLEGIYRLLQETTPLPNLAVSLNAPNDELRNKLMPINKKYPLKELYQAIYDFCK-QT 253 Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFS 338 ++++ YV++K NDS A L L G+ KINLIP+NP + +Q + F+ Sbjct: 254 SKQVLIAYVLIKEQNDSIEHAKQLTNFLSGLNVKINLIPYNPQSRDRFQSPEQSTLENFT 313 Query: 339 ECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 ++ G+ + +R +G I+AACGQL +L Sbjct: 314 SYLREKGFYTLLRQTKGQKIMAACGQLGNL 343 >gi|260905210|ref|ZP_05913532.1| radical SAM enzyme, Cfr family protein [Brevibacterium linens BL2] Length = 410 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 130/399 (32%), Positives = 199/399 (49%), Gaps = 46/399 (11%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ L M +E +A+ ++G+P R QI + D + M+D+ +++R L Sbjct: 19 KQHLADMTMDERIDAVKEMGLPA----FRAKQISTHYFSHYQTDVESMTDLPKDLRADLQ 74 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + F +P ++ E ++F R G + +E+V + ++R TLCVSSQ GC Sbjct: 75 ERF---FPHLLTEVRRLRTANGDTIKFLWRLYDGAL-VESVLMRYRNRVTLCVSSQCGCG 130 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLG----------DFP-------GCE--- 165 + C FC TG Q L RN++A EI+ QV+ A ++ D P G E Sbjct: 131 MNCPFCATGQQGLTRNMSAAEIVEQVIRANQVIAAGELAPAPTSDMPAEGETALGAEADD 190 Query: 166 ----------DIEGMVIPSVG-RKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGLSF 212 D G + G ++SNIV MGMGEPL N+ V ++ + GL Sbjct: 191 EQGETSEATVDESGTSTSATGPERVSNIVFMGMGEPLANYKRVMNAVRRFVEPAPQGLGM 250 Query: 213 SKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S RRIT+ST G VP I ++ E+I V A+SLHA ++LR+ ++P+N ++ + IDA Sbjct: 251 SARRITISTVGLVPGINKLAAEDIPVTFALSLHAPDDELRDEMIPVNTRWKADEAIDAAY 310 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNPWPGCEYLC 328 +Y ++ RR++ EY ++K +ND P A L K L +N IP NP PG + Sbjct: 311 NYYQVT-GRRVSIEYALIKDMNDHPWRAELLAKKLNARGRGWVHVNPIPLNPTPGSVWTA 369 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 S+ + F + G + IR RG DI ACGQL + Sbjct: 370 SEPEVADEFVRRLIDQGIPTTIRDTRGSDIDGACGQLAA 408 >gi|302542187|ref|ZP_07294529.1| cfr family radical SAM enzyme [Streptomyces hygroscopicus ATCC 53653] gi|302459805|gb|EFL22898.1| cfr family radical SAM enzyme [Streptomyces himastatinicus ATCC 53653] Length = 372 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 123/345 (35%), Positives = 181/345 (52%), Gaps = 25/345 (7%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI--VDEKISCDG--TRKW 88 R +Q+ + + R D +D+ R L + + P++ V ISCD TRK Sbjct: 46 FRAAQVSRHYFARYTDDPAQWTDVPAAAREKLA---AGLLPDLMSVVRHISCDDDTTRKT 102 Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 L R G + +E+V + R T+C+SSQ GC + C FC TG L RNL+ EI+ Sbjct: 103 LWRL----FDGTL-VESVLMRYPDRVTMCISSQAGCGMNCPFCATGQAGLDRNLSTAEIV 157 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 Q++ L D IP ++SNIV MGMGEPL N++ V ++ +D Sbjct: 158 HQIVDGMRALRDGE---------IPGGPARLSNIVFMGMGEPLANYNRVIGAIRRLTDPE 208 Query: 209 --GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEM 265 GL S+R IT+ST G VP + R +E LA+SLHA ++LR+ LVP+N ++ + Sbjct: 209 PDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAVSLHAPDDELRDTLVPVNTRWKVRE 268 Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE 325 ++DA Y + RRI+ EY ++K IND A L ++LKG +NLIP NP PG + Sbjct: 269 VLDAAWEY-AEKSGRRISIEYALIKDINDQAWRADLLGRLLKGHRVHVNLIPLNPTPGSK 327 Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 + S +D F ++R G +R RG +I ACGQL + + Sbjct: 328 WTASRPEDEKAFVAALERHGVPVTVRDTRGQEIDGACGQLAATER 372 >gi|260436262|ref|ZP_05790232.1| radical SAM enzyme, Cfr family [Synechococcus sp. WH 8109] gi|260414136|gb|EEX07432.1| radical SAM enzyme, Cfr family [Synechococcus sp. WH 8109] Length = 352 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 126/368 (34%), Positives = 186/368 (50%), Gaps = 37/368 (10%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLN 65 ++L+G EL++ + Q R Q+ WIY +G R ++ + R LL Sbjct: 3 QALLGRSAAELQD----WAVAQGQKPFRGRQLHDWIYAKGARSLADITVFPKTWRAALLE 58 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + V ++ D T K LL IETV IP R T+CVSSQVGC Sbjct: 59 GGIDVGRLKEVHRSVATDATTKLLL-----STEDGETIETVGIPTDQRLTVCVSSQVGCP 113 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG L R+L EI+ QVL R ++ R+ S+IV M Sbjct: 114 MACRFCATGKGGLQRSLQTHEIVDQVLSVRE-----------------AMDRRPSHIVFM 156 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF---VPNIARVG-EEIG---VM 238 GMGEPL N V +++ +D +G+ +RRIT+ST G +P +A + + +G Sbjct: 157 GMGEPLLNSSAVLEAIRCLNDDLGIG--QRRITVSTVGVPKTLPQLAELAMQRLGRAQFT 214 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLHA + LR L+P YP + L++ CRHY ++ RR++FEY++L +ND P Sbjct: 215 LAVSLHAPNQRLREELIPTAHAYPYDALLEDCRHYLDVT-GRRVSFEYILLGELNDQPEH 273 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L + G + +NLI +NP E+ + I F ++R G + +R RGLD Sbjct: 274 AAELADRVGGFQSHVNLIAYNPIEEEEFKRPTPQRIEVFRRVLERRGVAVSLRASRGLDQ 333 Query: 359 LAACGQLK 366 AACGQL+ Sbjct: 334 NAACGQLR 341 >gi|240171730|ref|ZP_04750389.1| hypothetical protein MkanA1_20620 [Mycobacterium kansasii ATCC 12478] Length = 364 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 121/358 (33%), Positives = 194/358 (54%), Gaps = 36/358 (10%) Query: 20 ALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD-- 77 A+ ++G+P R Q+ + R I D + MSD+ VR ++ + ++P ++ Sbjct: 30 AVAELGLPA----FRAKQLAHHYFGRLIADPRQMSDLPAAVRDVIA---AAMFPTLLTAV 82 Query: 78 EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135 +++CD TRK L R + G +E+V + R T+C+SSQ GC + C FC TG Sbjct: 83 REVTCDAGQTRKTLWR----AVDG-ATVESVLMRYPQRNTVCISSQAGCGMACPFCATGQ 137 Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195 L RNL+ EI+ QV A + + D G ++SN+V MGMGEPL N+ Sbjct: 138 GGLTRNLSTAEIVEQVRAAAAAMRD-------------DFGDRLSNVVFMGMGEPLANYS 184 Query: 196 NVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252 V ++ ++ G S R +T+ST G P I ++ +E +GV LA+SLHA ++LR+ Sbjct: 185 RVVAAVRRITEPPPCGFGISARSVTVSTVGLAPAIRKLADERLGVTLALSLHAPDDELRD 244 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GI 309 LVP+N ++ ++ +DA R+Y ++ RR++ EY +++G+ND A L + L G Sbjct: 245 TLVPVNNRWKVDEALDAARYYAEVTG-RRVSVEYALIRGVNDQRWRADLLGRRLHRALGP 303 Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 +NLIP NP PG ++ S + F + ++ G S +R RG +I AACGQL + Sbjct: 304 LVHVNLIPLNPTPGSDWDASPKPVERDFVKHVRAQGVSCTVRDTRGREISAACGQLAA 361 >gi|313813381|gb|EFS51095.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL025PA1] Length = 405 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 124/370 (33%), Positives = 187/370 (50%), Gaps = 33/370 (8%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQHFSIIYP 73 EE +A+ G+P R QI ++ R D +D+ + R + + F ++ Sbjct: 49 EERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWFPVLLT 104 Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP----EKSRGTLCVSSQVGCSLTCS 129 ++ + T K L R G VE +Y P +R TLC+SSQ GC + C Sbjct: 105 KVSQQSCDRGTTVKTLWRLHG---GALVESVLMYYPATRHSAARATLCLSSQAGCGMACP 161 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 FC TG + RN++ EI+ QVL A L+ G+ PG ++ NIV MGM Sbjct: 162 FCATGQGGIQRNMSTAEIVSQVLAANRLIAAGEVPGASG-----------RVHNIVFMGM 210 Query: 188 GEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 GEP+ N+ +V + A G+ S R +TLST G VP I + +E I V LA+SLH Sbjct: 211 GEPMANYRSVLTVIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVTLAVSLH 270 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++LR+ L+P+NR++ ++ L+DA HY RR++ EY ++K IND A L + Sbjct: 271 APDDELRDELIPVNRRWKVDELLDAAWHY-AEKTKRRVSIEYALMKDINDQADRAAVLAR 329 Query: 305 ILK----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 ++ A +NLIP NP PG + S +D F E ++R +R RG +I Sbjct: 330 QIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTRGSEIDG 389 Query: 361 ACGQLKSLSK 370 ACGQL ++ + Sbjct: 390 ACGQLAAVGR 399 >gi|254392089|ref|ZP_05007278.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|294815391|ref|ZP_06774034.1| Ribosomal RNA large subunit methyltransferase N [Streptomyces clavuligerus ATCC 27064] gi|326443743|ref|ZP_08218477.1| ribosomal RNA large subunit methyltransferase N [Streptomyces clavuligerus ATCC 27064] gi|197705765|gb|EDY51577.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|294327990|gb|EFG09633.1| Ribosomal RNA large subunit methyltransferase N [Streptomyces clavuligerus ATCC 27064] Length = 368 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 126/369 (34%), Positives = 185/369 (50%), Gaps = 29/369 (7%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L + E +EA+ IG R Q+ + + R D +DI R L Sbjct: 22 LADLTPAERKEAVAAIG----EKPFRAKQLSQHYFARYAHDPAAWTDIPAAARERLA--- 74 Query: 69 SIIYPEI--VDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 S + P++ V +SCD TRK L R + +E+V + R T+C+SSQ GC Sbjct: 75 SELLPDLMSVVRHVSCDNDTTRKTLWRLHDGTL-----VESVLMRYPDRVTMCISSQAGC 129 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EI+ Q++ L D +P ++SNIV Sbjct: 130 GMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDGE---------VPGGPARLSNIVF 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 MGMGEPL N+ V ++ +D GL S+R IT+ST G VP + R +E LA+ Sbjct: 181 MGMGEPLANYKRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAV 240 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++LR+ LVP+N ++ + ++DA Y + RR++ EY +++ IND Sbjct: 241 SLHAPDDELRDTLVPVNTRWKVREVLDAAWEY-AEKSGRRVSIEYALIRDINDHAWRGDL 299 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++LKG +NLIP NP PG ++ S +D F E I G +R RG +I A Sbjct: 300 LGRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTVRDTRGQEIDGA 359 Query: 362 CGQLKSLSK 370 CGQL + + Sbjct: 360 CGQLAAAER 368 >gi|256390734|ref|YP_003112298.1| ribosomal RNA large subunit methyltransferase N [Catenulispora acidiphila DSM 44928] gi|256356960|gb|ACU70457.1| radical SAM enzyme, Cfr family [Catenulispora acidiphila DSM 44928] Length = 395 Score = 189 bits (481), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 127/371 (34%), Positives = 195/371 (52%), Gaps = 33/371 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L + E ++AL ++G H R +Q+ + + D SD+ R L Sbjct: 49 LADLTSAERKKALSELG----HQGFRAAQVSQHYFGHLADDPAQWSDVPAAKREEL---A 101 Query: 69 SIIYPEI---VDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I+ P + + E+ + +GT RK L R G +E+V + + R T+CVSSQ GC Sbjct: 102 GILTPRLLTPIREQTADNGTTRKTLWRL----FDG-ATVESVLMRYRDRTTMCVSSQAGC 156 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLL-ARSLL-GDFPGCEDIEGMVIPSVGRKISNI 182 + C FC TG L RN++ EI+ QV+ AR++ G+ PG ++SN+ Sbjct: 157 GMNCPFCATGQAGLTRNMSTGEIVEQVVAGARTMARGEVPGGPG-----------RVSNV 205 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239 V MGMGEPL N+ V ++ ++ + GL S R IT+ST G VP I ++ E I V L Sbjct: 206 VFMGMGEPLANYKAVIGAVRRLTEPVPDGLGLSARHITVSTVGLVPAIEKLTAEAIPVTL 265 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA ++LR+ LVP+N ++ + ++DA Y ++ RR++ EY ++K IND A Sbjct: 266 AVSLHAPDDELRDTLVPVNTRWNVSEVLDAAWRYASVTK-RRVSIEYALIKDINDQAWRA 324 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L ++L+ +NLIP NP PG ++ S +D F ++ G +R RG DI Sbjct: 325 DRLGRMLRNKLVHVNLIPLNPTPGSKWTASRPQDEAEFVRRLQEWGVPVTVRDTRGRDID 384 Query: 360 AACGQLKSLSK 370 ACGQL + K Sbjct: 385 GACGQLAAAVK 395 >gi|154497983|ref|ZP_02036361.1| hypothetical protein BACCAP_01963 [Bacteroides capillosus ATCC 29799] gi|150272973|gb|EDN00130.1| hypothetical protein BACCAP_01963 [Bacteroides capillosus ATCC 29799] Length = 340 Score = 189 bits (481), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 123/358 (34%), Positives = 192/358 (53%), Gaps = 34/358 (9%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 M + E+ + ++G P R Q+++W++ RG F M+++S+ +R L+ I Sbjct: 7 MNQAEMADYFRELGEPA----FRAKQVFQWLH-RGAVSFDDMTNLSKGLREKLSGSCYIT 61 Query: 72 YPEIVDEKISC-DGTRKWLLRF-PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129 P + +++S DGT K+L + CI ETV + T+C+SSQVGC + C+ Sbjct: 62 APAVERKQVSAQDGTIKYLWKLRDGNCI------ETVLMRYHHGNTVCISSQVGCRMGCA 115 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 FC + VRNLT E+L QVL + G +P ISNIV+MG+GE Sbjct: 116 FCASTLGGKVRNLTPSEMLDQVLFTQLDSG------------VP-----ISNIVLMGIGE 158 Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSN 248 PL NFD V + L + + GL+ R I+LST G V I ++ + + + L++SLHA + Sbjct: 159 PLDNFDTVMRFLELVNHPDGLNIGMRHISLSTCGLVEKIDKLADLRLQLTLSVSLHAPDD 218 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 + R+ ++P+N+ +E L +CR Y RRI++EY M+ G+NDS A L K LKG Sbjct: 219 ETRSRIMPVNKAVGVERLFRSCRQYFE-KTGRRISYEYAMIDGVNDSDWQADLLAKHLKG 277 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 P +NLIP N E + + F + +++ G + +R G DI A+CGQL+ Sbjct: 278 TPGHVNLIPLNEVK--ESPLKPSRRVEAFQKRLEQHGITVTVRRKLGGDIDASCGQLR 333 >gi|323453959|gb|EGB09830.1| hypothetical protein AURANDRAFT_12530 [Aureococcus anophagefferens] Length = 323 Score = 189 bits (481), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 122/345 (35%), Positives = 180/345 (52%), Gaps = 34/345 (9%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD---EKISC-DGTRK 87 + R QI +WIY +G+ DF MS++ ++ R L + + I E++S DGT K Sbjct: 2 KFRAKQIHEWIYDKGVHDFDAMSNLPKKFRDDLKARGATVGGTIAKLRVEQVSQRDGTIK 61 Query: 88 WLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEE 146 F + +E+V +P E R T C+SSQ GC + C+FC TG L R+LTA E Sbjct: 62 RAYEFRDGSV-----VESVLMPYEDGRRTACISSQAGCGMGCTFCATGQMGLTRHLTAAE 116 Query: 147 ILLQVL-LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS 205 I Q +R L + G ++SN+V MGMGEPL N+ NV + + Sbjct: 117 IFEQAARFSREL---------------SARGERLSNVVFMGMGEPLANYKNVMAAARRIN 161 Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLE 264 D +G+ R IT+ST G I ++ E+ + V LA+SLH ++ R+ ++P+N +Y LE Sbjct: 162 DELGV--GARHITISTVGLARGIGKLAEDPLQVTLAVSLHQATDAARSAIMPVNDRYDLE 219 Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK--GI-PAKINLIPFNPW 321 L+ A R Y + RR+TFE+ + G ND A L +LK GI A +N+IP NP Sbjct: 220 TLLGAVRDYQAATR-RRVTFEWAAIAGENDDVDAARTLGALLKKHGIRDAHVNVIPLNPT 278 Query: 322 PGCEYLCSDQKDIVTFSECIKRS-GYSSPIRTPRGLDILAACGQL 365 G + + F + ++ G S+ R RG+DI A CGQL Sbjct: 279 KGYGGKRAKNGAVDRFCKTLEAEFGVSATPRVRRGIDIDAGCGQL 323 >gi|312622709|ref|YP_004024322.1| radical sam enzyme, cfr family [Caldicellulosiruptor kronotskyensis 2002] gi|312203176|gb|ADQ46503.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor kronotskyensis 2002] Length = 341 Score = 189 bits (480), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 119/336 (35%), Positives = 180/336 (53%), Gaps = 27/336 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTR-KWLLR 91 R +QI++W+Y + D +++ E+R + F + +I+ + DG K+L Sbjct: 25 FRATQIFEWLYKKNATDVMQFTNLPLELRKKIYDEFLMNSLQILQHQ--SDGESIKFLFE 82 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 + IE+V++P + +CVS+QVGC + C FC + VRNLT E++ Q+ Sbjct: 83 LCDKN-----GIESVFLPYRYGNAVCVSTQVGCKMNCGFCASAIGGFVRNLTPGEMVDQI 137 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 + A + G++I+N+V+MG GEP N +NV K + I + G + Sbjct: 138 ISAENF-----------------TGKRITNVVLMGSGEPFDNIENVFKFIEIINSKDGKN 180 Query: 212 FSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 R IT+ST G V I R+ + V LAISLHA +N LR+ LVPIN+KYP+E ++ A Sbjct: 181 IGARHITISTVGIVEGIYRLCDFPKQVNLAISLHAPNNSLRDKLVPINKKYPIEDIMKAV 240 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 +Y +N RR+TFEY ++ G+NDS A L +ILKG +NLIP NP + Sbjct: 241 DYYIQKTN-RRVTFEYALIDGVNDSIDCAQELGRILKGKLVHVNLIPVNPVEEKGFRRPS 299 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 ++ I F E +K + IR G I AACGQL+ Sbjct: 300 KEKIKVFFETLKSYQINVTIRRELGSSISAACGQLR 335 >gi|253580148|ref|ZP_04857415.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848667|gb|EES76630.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 346 Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 111/335 (33%), Positives = 184/335 (54%), Gaps = 24/335 (7%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI+ W++ + + M+++S+ +R L ++ + + DGT+K+L R Sbjct: 24 FRAKQIYSWLHEHLVTSYDEMTNLSKSLREKLKEYPVTALKMVKVQTSRIDGTQKYLFRL 83 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G V IE+V + K ++C+SSQVGC + C FC + L R L E+L Q+ Sbjct: 84 S----DGNV-IESVLMRYKHGNSVCISSQVGCRMGCRFCASTIGGLTRCLLPSEMLDQIY 138 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 ++L G+ ++SN+V+MG GEPL N++N+ + + I ++ GL Sbjct: 139 RIQALTGE-----------------RVSNVVVMGTGEPLDNYENLLRFIHILTEDGGLHI 181 Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S+R +T+ST G VP I + +E + + LA+SLHA ++ R L+PI KY ++ +++ACR Sbjct: 182 SQRNLTVSTCGLVPKIYDLAKEKLQMTLALSLHAPNDVKRRELMPIANKYSMDEVLEACR 241 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 +Y RRITFEY ++ G+NDS DA L ++ + +NLIP NP ++ S + Sbjct: 242 YYFK-ETGRRITFEYSLVAGVNDSDEDARELSGRIRDMNCHVNLIPVNPIKERSFVRSTR 300 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + + F +++ G + IR G DI ACGQL+ Sbjct: 301 QAVENFKIKLEKCGINVTIRREMGSDIDGACGQLR 335 >gi|326790877|ref|YP_004308698.1| radical SAM protein [Clostridium lentocellum DSM 5427] gi|326541641|gb|ADZ83500.1| radical SAM enzyme, Cfr family [Clostridium lentocellum DSM 5427] Length = 345 Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 117/353 (33%), Positives = 186/353 (52%), Gaps = 29/353 (8%) Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75 ELEE +L G + R Q+++W + + + D+ M+++ ++R L +++ I I Sbjct: 11 ELEEIILAYG----ESKFRAKQLFEWFHKKMVWDYDEMNNLPLKLRDKLKENYPIQSLRI 66 Query: 76 VDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134 V++ S DGT K+L I IE+V + K ++C+SSQVGC + C FC + Sbjct: 67 VEKLCSEIDGTIKYLFELSDSHI-----IESVLMRYKHGNSVCISSQVGCRMGCKFCAST 121 Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194 + VRNL E++ Q+ + ++SNIV+MG GEPL Sbjct: 122 VEGRVRNLLPAEMVGQIY-----------------AISKDTNERVSNIVIMGSGEPLEEL 164 Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNI 253 + + + + G + +R IT+ST G VP I + EE + + LA+SLHA +++ R Sbjct: 165 GVTLRFVELINHPSGQNIGQRHITVSTCGLVPEIKALAEEKLQINLALSLHATTDERRQA 224 Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313 ++PI RKY LE ++ AC ++ +N RR+TFEY +++G ND DA L +LKG+ + Sbjct: 225 IMPIARKYSLEEVLAACHYFIEKTN-RRVTFEYALIEGENDKEEDARRLGGLLKGMLCHV 283 Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 NLIP N Y S I F +++ G + +R G DI AACGQL+ Sbjct: 284 NLIPVNQIDERSYKSSKASSIERFKGVLEQYGVPTTLRRTLGADIDAACGQLR 336 >gi|296123027|ref|YP_003630805.1| radical SAM protein [Planctomyces limnophilus DSM 3776] gi|296015367|gb|ADG68606.1| radical SAM enzyme, Cfr family [Planctomyces limnophilus DSM 3776] Length = 408 Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 120/336 (35%), Positives = 176/336 (52%), Gaps = 26/336 (7%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93 R QI + I+ F M+++ ++R LL F+++ E+V +I+ D T K LL+ Sbjct: 79 RAGQIQQQIFPNRATQFGEMTNLPAKLRELLAATFTLLPSEVVAHQIAKDRTEKLLLQLH 138 Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153 + +E V + E R T+C+S+QVGC + C FC +G L RNLT EIL QVL Sbjct: 139 DGSL-----VECVLMREDDRRTICISTQVGCGMGCVFCASGLLGLKRNLTTGEILEQVLR 193 Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213 LL P E K++N+V+MGMGEPL N N+ +L + GL Sbjct: 194 LDRLL---PADE------------KLTNVVVMGMGEPLANLKNLLPALDRLTADDGLGLG 238 Query: 214 KRRITLSTSGF---VPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 RRIT+ST G + +A+ G + LA+SLHA +LR LVP+N+ +E +++A Sbjct: 239 ARRITVSTVGLPEKIRELAQTGHQFN--LAVSLHAPEAELRTKLVPVNKNIGIEAVLEAA 296 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 Y ++ RR+++EYV+L GIND P A L +LK A +NLIP N + Sbjct: 297 DDYFAIT-GRRVSYEYVLLGGINDLPEHARQLGHLLKSRIAHVNLIPMNGVKELPFAEPS 355 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 F ++ G +R +G DI AACGQL+ Sbjct: 356 APQTGEFVAILESFGVPVTVRKRKGADIDAACGQLR 391 >gi|328885356|emb|CCA58595.1| Ribosomal RNA large subunit methyltransferase N [Streptomyces venezuelae ATCC 10712] Length = 368 Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 128/369 (34%), Positives = 184/369 (49%), Gaps = 29/369 (7%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L + E +EA+ IG R Q+ + R D +DI R L Sbjct: 22 LADLTPAERKEAVAAIG----EKPFRAKQLSTHYFARYAHDPAEWTDIPAASREKLAGE- 76 Query: 69 SIIYPEI--VDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + P++ V ISCD TRK L R + +E+V + R T+C+SSQ GC Sbjct: 77 --LLPDLMSVVRHISCDDDTTRKTLWRLHDGTL-----VESVLMRYPDRVTMCISSQAGC 129 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EI+ Q++ L D +P ++SNIV Sbjct: 130 GMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDGE---------VPGGPARLSNIVF 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 MGMGEPL N+ V ++ +D GL S+R IT+ST G VP + R +E LA+ Sbjct: 181 MGMGEPLANYKRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAV 240 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++LR+ LVP+N ++ + ++DA Y + RRI+ EY +++ IND Sbjct: 241 SLHAPDDELRDTLVPVNTRWKVREVLDAAWEY-AEKSGRRISIEYALIRDINDQAWRGDL 299 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++LKG +NLIP NP PG ++ S +D F E I R G +R RG +I A Sbjct: 300 LGRLLKGRRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIARHGVPVTVRDTRGQEIDGA 359 Query: 362 CGQLKSLSK 370 CGQL + + Sbjct: 360 CGQLAAAER 368 >gi|302872121|ref|YP_003840757.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor obsidiansis OB47] gi|302574980|gb|ADL42771.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor obsidiansis OB47] Length = 344 Score = 189 bits (480), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 123/354 (34%), Positives = 189/354 (53%), Gaps = 31/354 (8%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 +EL++ L IG R SQI++W+Y + D +++ E+R + F I + Sbjct: 11 DELKKWLENIG----EKPFRASQIFEWLYKKNATDVMQFTNLPLELREKIGDEFLINSLQ 66 Query: 75 IVDEKISCDGTR-KWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133 I+ + DG K+L +G IE+V++P + +CVS+QVGC + C FC + Sbjct: 67 ILQHQ--SDGESIKFLFE-----LGDKNGIESVFLPYRYGNAICVSTQVGCRMNCRFCAS 119 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 VRNL+A E++ Q++ ++E G++I+N+V+MG GEP N Sbjct: 120 AIGGFVRNLSAGEMVDQII-------------NVENFT----GKRITNVVLMGSGEPFDN 162 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRN 252 +NV K + I + G + R IT+ST G I R+ + V LAISLHA +N LR+ Sbjct: 163 IENVFKFIEIINSKEGKNIGARHITISTVGIAEGIYRLCDFPKQVNLAISLHAPNNRLRD 222 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312 LVP+N+KYP+E ++ A +Y +N RR+TFEY ++ G+NDS A L ++LKG Sbjct: 223 KLVPMNKKYPVEDIMKAVDYYIQKTN-RRVTFEYALIDGVNDSIECAEELGQMLKGKLVH 281 Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +NLIP NP + ++ I F E ++ IR G I AACGQL+ Sbjct: 282 VNLIPVNPVEEKGFRRPSKEKIKAFFETLRSYQIQVTIRRELGSSISAACGQLR 335 >gi|297588340|ref|ZP_06946983.1| cfr family radical SAM enzyme [Finegoldia magna ATCC 53516] gi|297573713|gb|EFH92434.1| cfr family radical SAM enzyme [Finegoldia magna ATCC 53516] Length = 349 Score = 189 bits (479), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 119/369 (32%), Positives = 197/369 (53%), Gaps = 35/369 (9%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L M +EL+E + G R Q ++ I+ I D + M++ S ++R L+ + Sbjct: 7 LENMTVDELKEFFVNNG----EKSFRALQYFQAIHKNRIFDPEMMTNFSNDLRKKLDNYN 62 Query: 69 SIIYPEIV---DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I I+ D K+ D T+K+L+ I +ETV++ K+ ++C+S+Q+GC Sbjct: 63 DIKNCSIIKRIDSKL--DNTKKYLIELSDGNI-----VETVFMEYKTHTSICLSTQIGCK 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC + + VRNL E+ Q+ L + +G +I+N+V+M Sbjct: 116 MGCKFCASTKKSFVRNLQPYEMCAQIYLVEN-----------------DLGIRINNMVLM 158 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLH 244 G+GEPL N+DNV + + + S+ G S R ITLST G V I ++ E+IG+ + ISLH Sbjct: 159 GIGEPLDNYDNVVRFIDLISNKEGQDMSIRNITLSTCGLVDKIIKLADEDIGINITISLH 218 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 ++ RN L+PI KY +E ++DAC +Y + RRI FEY ++ +NDS + L+ Sbjct: 219 NPFDNERNQLMPIGNKYSIEEILDACDYYFDKT-KRRIGFEYTVIGNVNDSKKYMDKLVG 277 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK +NLI NP D+ ++ F + ++ ++ IR +G+DI ACGQ Sbjct: 278 LLKNRNCLLNLITLNPIEEFNQKSPDRNKMMEFMNYMNKNNVNTTIRRKQGIDIDGACGQ 337 Query: 365 LK--SLSKR 371 L+ +++KR Sbjct: 338 LRINNMTKR 346 >gi|326333653|ref|ZP_08199890.1| radical SAM enzyme, Cfr family [Nocardioidaceae bacterium Broad-1] gi|325948559|gb|EGD40662.1| radical SAM enzyme, Cfr family [Nocardioidaceae bacterium Broad-1] Length = 395 Score = 189 bits (479), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 124/364 (34%), Positives = 190/364 (52%), Gaps = 35/364 (9%) Query: 18 EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQHFSIIYPEIV 76 ++A + G+P R Q+ + R + D M+D+ R L+N + I Sbjct: 53 QDAAKEAGLPG----FRAKQLSVHYFERLVDDPAKMTDLPASQREELVNTFLPDLMTPIR 108 Query: 77 DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136 ++ TRK L + + +E+V + R T+C+SSQ GC + C FC TG Sbjct: 109 QQEADKGTTRKTLWKLFDGAL-----VESVLMRYTDRATVCISSQAGCGMACPFCATGQG 163 Query: 137 KLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194 L RN++ EI+ QV++A + G+ PG ++SN+V MGMGEP+ N+ Sbjct: 164 GLERNMSTAEIVHQVVVAARQMASGEIPGGPG-----------RLSNVVFMGMGEPMANY 212 Query: 195 D----NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSND 249 V++ S A + +GL S R +T+ST G VP I ++ EE I V LA+SLHA ++ Sbjct: 213 KALMGAVRRLTSPAPEGLGL--SARHVTVSTVGLVPRIKQLTEEGIPVTLALSLHAPDDE 270 Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309 LRN LVPIN ++ + ++A +Y ++ RR++ EY M++GIND A L +L G Sbjct: 271 LRNELVPINTRFSVAETVEAAWNYARVTK-RRVSIEYAMMRGINDQAWRADLLADVLNGY 329 Query: 310 P----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +NLIP NP PG ++ SD D F ++ G S+ +R RG +I ACGQL Sbjct: 330 GDWGWVHVNLIPLNPTPGSKWTASDPADEREFVRRLEAKGISTTVRDTRGREIDGACGQL 389 Query: 366 KSLS 369 + S Sbjct: 390 AAQS 393 >gi|302522180|ref|ZP_07274522.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp. SPB78] gi|302431075|gb|EFL02891.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp. SPB78] Length = 372 Score = 189 bits (479), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 127/362 (35%), Positives = 185/362 (51%), Gaps = 29/362 (8%) Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75 E +EA+ IG R Q+ + + R +D +DI R L + + PE+ Sbjct: 33 ERKEAVAAIG----EKPFRAKQLSQHYFARYAQDPAQWTDIPAAARGRLQE---ALLPEL 85 Query: 76 --VDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131 V ISCD TRK L R G + +E+V + R T+C+SSQ GC + C FC Sbjct: 86 MSVVRHISCDDDTTRKTLWRL----FDGTL-VESVLMRYPDRVTMCISSQAGCGMNCPFC 140 Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191 TG L RNL+ EI+ Q++ L D IP ++SNIV MGMGEPL Sbjct: 141 ATGQAGLDRNLSTAEIVHQIVEGMRALRDGE---------IPGGPARLSNIVFMGMGEPL 191 Query: 192 CNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248 N++ V ++ +D GL S+R IT+ST G VP I R +E LA+SLHA + Sbjct: 192 ANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAIHRFADEGFKCRLAVSLHAPDD 251 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 +LR+ LVP+N ++ + ++DA Y + RR++ EY +++ IND L ++LK Sbjct: 252 ELRDTLVPVNTRWKVREVLDAAWEY-AEKSGRRVSIEYALIRDINDQAWRGDLLGRLLKN 310 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 +NLIP NP PG ++ S +D F + I G +R RG +I ACGQL + Sbjct: 311 KRVHVNLIPLNPTPGSKWTASRPEDERAFVDAIAAHGVPVTVRDTRGQEIDGACGQLAAA 370 Query: 369 SK 370 + Sbjct: 371 ER 372 >gi|257055048|ref|YP_003132880.1| ribosomal RNA large subunit methyltransferase N [Saccharomonospora viridis DSM 43017] gi|256584920|gb|ACU96053.1| radical SAM enzyme, Cfr family [Saccharomonospora viridis DSM 43017] Length = 370 Score = 189 bits (479), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 127/375 (33%), Positives = 197/375 (52%), Gaps = 29/375 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDI-SQEVRH 62 L + L + E EA++ +G R Q+ + R D + M+DI + R Sbjct: 12 LPRRHLADLTVTERAEAVVALG----EKPFRAKQLSHHYFSRLTVDPEAMTDIPAASRRR 67 Query: 63 LLNQHFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 L+++ + ++ + CDG TRK L R + +E+V + R TLC+SS Sbjct: 68 LVDELMPPLLTQV--RAVDCDGGSTRKTLWRAHDGTL-----VESVLMRYPDRATLCISS 120 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD--FPGCEDIEGMVIPSVGRK 178 Q GC + C FC TG L RNL+ EI+ QV A +++ D PG + P GR Sbjct: 121 QAGCGMACPFCATGQGGLTRNLSTAEIVDQVRAAAAVMRDGLMPGPDG-----APKPGR- 174 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-I 235 +SNIV MGMGEPL N+ V ++ +D GL S+R +T+ST G P I ++ +E + Sbjct: 175 LSNIVFMGMGEPLANYKRVLAAVRRITDPPPAGLGISQRSVTVSTVGLAPAIRKLADEGL 234 Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 V LA+SLH ++LR+ LVP+N ++ ++ ++ A R+Y + RR++ EY +++ IND Sbjct: 235 QVRLAVSLHTPDDELRDELVPVNNRWSVDEVLRAARYYADRTG-RRVSIEYALIRDINDQ 293 Query: 296 PRDALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 P A L K L+ G +N+IP NP PG ++ S + F + G + +R Sbjct: 294 PWRADLLAKRLREHLGQLVHVNVIPLNPTPGSKWDASPKPVEREFVRRVNAGGVACTVRD 353 Query: 353 PRGLDILAACGQLKS 367 RG +I AACGQL + Sbjct: 354 TRGQEIAAACGQLAA 368 >gi|239928666|ref|ZP_04685619.1| hypothetical protein SghaA1_10605 [Streptomyces ghanaensis ATCC 14672] gi|291436989|ref|ZP_06576379.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291339884|gb|EFE66840.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 368 Score = 189 bits (479), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 123/342 (35%), Positives = 178/342 (52%), Gaps = 25/342 (7%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI--VDEKISCD--GTRKW 88 R Q+ + + R D + +DI R L + + PE+ V +S D TRK Sbjct: 42 FRAKQLSQHYFARYAHDPEQWTDIPAGSRARLRE---ALLPELMTVVRHLSTDQGTTRKT 98 Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 L + G + +E+V + R T+C+SSQ GC + C FC TG L RNL+ EI+ Sbjct: 99 LWKL----FDGTL-VESVLMRYPDRVTMCISSQAGCGMNCPFCATGQAGLDRNLSTAEIV 153 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 Q++ G + +P ++SNIV MGMGEPL N++ V ++ +D Sbjct: 154 HQIV---------DGMRALRDGEVPGGPTRLSNIVFMGMGEPLANYNRVVGAIRRLTDPE 204 Query: 209 --GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEM 265 GL S+R IT+ST G VP I R +E LAISLHA ++LR+ LVP+N ++ + Sbjct: 205 PDGLGLSQRGITVSTVGLVPAIHRFSDEGFKCRLAISLHAPDDELRDTLVPVNTRWKVRE 264 Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE 325 ++DA Y S RR++ EY +++ IND L ++LKG P +NLIP NP PG + Sbjct: 265 VLDAGFAYAARS-GRRLSIEYALIRDINDQAWRGDRLGRLLKGRPVHVNLIPLNPTPGSQ 323 Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 + S +D F E I G IR RG +I ACGQL + Sbjct: 324 WTASRPEDEKAFVEAIAAHGVPVTIRDTRGQEIDGACGQLAA 365 >gi|319441379|ref|ZP_07990535.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium variabile DSM 44702] Length = 370 Score = 189 bits (479), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 133/369 (36%), Positives = 196/369 (53%), Gaps = 32/369 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L + +E++ A+ G+P R +QI + Y R D M+D+ + +R + Sbjct: 21 LADLTDDEVKAAVKDAGLPG----FRANQIARQYYGRLEGDPMAMTDLPENLRSTVK--- 73 Query: 69 SIIYPEIVD--EKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 ++P ++D ISCD TRK L + + +E+V + R TLC+SSQ GC Sbjct: 74 DTLFPTLMDPVRHISCDEGQTRKTLWKLHDSTL-----LESVLMRYPDRATLCISSQAGC 128 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EI+ QV A + D D+EG GR +SNIV Sbjct: 129 GMACPFCATGQGGLDRNLSTGEIVEQVRAAARAMRDG----DVEG----GEGR-LSNIVF 179 Query: 185 MGMGEPLCNFDNVKKSLS-IASDS-MGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAI 241 MGMGEPL N+ V ++ I S S G S+R IT+ST G P I ++ E++ + LA+ Sbjct: 180 MGMGEPLANYKRVVAAIKRITSPSPEGFGISQRNITVSTVGLAPAIRKLADEDMHMRLAV 239 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH ++LR+ LVP+N ++ +E ++DA +Y S RR++ EY ++K +ND P A Sbjct: 240 SLHCPDDELRDTLVPVNNRWSIEEVLDAAAYYAEKS-GRRVSIEYALIKEVNDHPWRADL 298 Query: 302 LIKILKGIPAK---INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 L K LK +NLIP NP PG E+ S + F + G + +R RG +I Sbjct: 299 LGKRLKKKLGNQVHVNLIPLNPTPGSEWDASPKPVQDEFVRRVNEQGVACTVRDTRGQEI 358 Query: 359 LAACGQLKS 367 AACGQL + Sbjct: 359 AAACGQLAA 367 >gi|295836269|ref|ZP_06823202.1| cfr family radical SAM enzyme [Streptomyces sp. SPB74] gi|197697366|gb|EDY44299.1| cfr family radical SAM enzyme [Streptomyces sp. SPB74] Length = 369 Score = 189 bits (479), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 127/362 (35%), Positives = 184/362 (50%), Gaps = 29/362 (8%) Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75 E +EA+ IG R Q+ + + R +D +DI R L + + PE+ Sbjct: 30 ERKEAVAAIG----EKPFRAKQLSQHYFARYAQDPAQWTDIPAAARGRLQEE---LLPEL 82 Query: 76 --VDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131 V ISCD TRK L R G + +E+V + R T+C+SSQ GC + C FC Sbjct: 83 MSVVRHISCDDDTTRKTLWRL----FDGTL-VESVLMRYPDRVTMCISSQAGCGMNCPFC 137 Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191 TG L RNL+ EI+ Q++ L D IP ++SNIV MGMGEPL Sbjct: 138 ATGQAGLDRNLSTAEIVHQIVEGMRALRDGE---------IPGGPARLSNIVFMGMGEPL 188 Query: 192 CNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248 N++ V ++ +D GL S+R IT+ST G VP I R +E LA+SLHA + Sbjct: 189 ANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAIHRFADEGFKCRLAVSLHAPDD 248 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 +LR+ LVP+N ++ + ++DA Y + RR++ EY +++ IND L ++LK Sbjct: 249 ELRDTLVPVNTRWKVREVLDAAWEY-AEKSGRRVSIEYALIRDINDQAWRGDLLGRLLKN 307 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 +NLIP NP PG + S +D F + I G +R RG +I ACGQL + Sbjct: 308 KRVHVNLIPLNPTPGSRWTASRPEDERAFVDAIAAHGVPVTVRDTRGQEIDGACGQLAAA 367 Query: 369 SK 370 + Sbjct: 368 ER 369 >gi|318056586|ref|ZP_07975309.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp. SA3_actG] gi|318075677|ref|ZP_07983009.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp. SA3_actF] Length = 369 Score = 189 bits (479), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 127/362 (35%), Positives = 185/362 (51%), Gaps = 29/362 (8%) Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75 E +EA+ IG R Q+ + + R +D +DI R L + + PE+ Sbjct: 30 ERKEAVAAIG----EKPFRAKQLSQHYFARYAQDPAQWTDIPAAARGRLQE---ALLPEL 82 Query: 76 --VDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131 V ISCD TRK L R G + +E+V + R T+C+SSQ GC + C FC Sbjct: 83 MSVVRHISCDDDTTRKTLWRL----FDGTL-VESVLMRYPDRVTMCISSQAGCGMNCPFC 137 Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191 TG L RNL+ EI+ Q++ L D IP ++SNIV MGMGEPL Sbjct: 138 ATGQAGLDRNLSTAEIVHQIVEGMRALRDGE---------IPGGPARLSNIVFMGMGEPL 188 Query: 192 CNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248 N++ V ++ +D GL S+R IT+ST G VP I R +E LA+SLHA + Sbjct: 189 ANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAIHRFADEGFKCRLAVSLHAPDD 248 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 +LR+ LVP+N ++ + ++DA Y + RR++ EY +++ IND L ++LK Sbjct: 249 ELRDTLVPVNTRWKVREVLDAAWEY-AEKSGRRVSIEYALIRDINDQAWRGDLLGRLLKN 307 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 +NLIP NP PG ++ S +D F + I G +R RG +I ACGQL + Sbjct: 308 KRVHVNLIPLNPTPGSKWTASRPEDERAFVDAIAAHGVPVTVRDTRGQEIDGACGQLAAA 367 Query: 369 SK 370 + Sbjct: 368 ER 369 >gi|119025804|ref|YP_909649.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium adolescentis ATCC 15703] gi|154487364|ref|ZP_02028771.1| hypothetical protein BIFADO_01214 [Bifidobacterium adolescentis L2-32] gi|205829670|sp|A1A1I4|RLMN_BIFAA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|118765388|dbj|BAF39567.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703] gi|154083882|gb|EDN82927.1| hypothetical protein BIFADO_01214 [Bifidobacterium adolescentis L2-32] Length = 386 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 132/366 (36%), Positives = 196/366 (53%), Gaps = 32/366 (8%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 M EE ++G+P + R Q+ Y + + SD R + F Sbjct: 39 MSEEERIGKAKELGLP----KFRVKQLANHYYGHFDVNAEEFSDFPAARRSDAAEAF--- 91 Query: 72 YPEIVDE---KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 +PE++ E +++ GT ++ R G + IE+V + +R TLC+SSQVGC + C Sbjct: 92 FPELIHEVTRQVADGGT---TIKTLWRLFDGSL-IESVLMRYPTRTTLCISSQVGCGMGC 147 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG L RN++A EI+ QV +A + D G V GR +SNIV MGMG Sbjct: 148 PFCATGQLGLTRNMSAGEIVEQVRVAAKAMRD--------GEVAGGSGR-LSNIVFMGMG 198 Query: 189 EPLCNFDNVKKSLSIASDSM---GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 EP+ N+ +V ++ S SM G S R IT+ST G VP I ++ EE I V LA+SLH Sbjct: 199 EPMGNYKSVLSAVRQIS-SMPPEGFGISARNITVSTVGVVPGIRKLAEEGIPVRLAVSLH 257 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A S++LR+ LVP+N+++ + ++DA Y L++ RR++ EY +++GIND A L K Sbjct: 258 APSDELRDELVPMNKRFNTKQVLDAAHDYY-LASKRRVSIEYALMRGINDQAEHAKLLAK 316 Query: 305 ILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L A +N IP NP G ++ S +D F E + +G ++ +R RG DI A Sbjct: 317 RLNHYGDDWAHVNPIPLNPIEGSKWTASKPEDERRFLEILHNAGITATLRDTRGQDIDGA 376 Query: 362 CGQLKS 367 CGQL + Sbjct: 377 CGQLAA 382 >gi|311744125|ref|ZP_07717931.1| cfr family radical SAM enzyme [Aeromicrobium marinum DSM 15272] gi|311313255|gb|EFQ83166.1| cfr family radical SAM enzyme [Aeromicrobium marinum DSM 15272] Length = 380 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 131/371 (35%), Positives = 193/371 (52%), Gaps = 30/371 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L + EE A ++G P R Q+ Y R RD M+D+ R ++ Sbjct: 26 LADLSTEERTAAAAELGEPA----FRVKQVAHHYYARLERDPAAMTDLPAANR---DRIA 78 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVSSQVG 123 + + P ++D + + R ++ R G + +E+V + S R T+CVSSQ G Sbjct: 79 AALLPTLLDPVRTMEADRGTTVKNLWRLFDGAL-VESVLMRYLSADGPGRATICVSSQAG 137 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG L RN++ EI+ QV+ A + G V GR +SN+V Sbjct: 138 CGMACPFCATGQGGLQRNMSTAEIVDQVVDAAGRMA--------RGEVAGGPGR-LSNVV 188 Query: 184 MMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240 MGMGEP+ N+ V ++ +A GL S R ITLST G VP I ++ EE I V LA Sbjct: 189 FMGMGEPMANYRAVVGAIRRMVAPAPDGLGLSARNITLSTVGLVPRIRQLTEEGIPVTLA 248 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++LR+ LVPIN ++ ++ ++DA R Y + RR++ EY M++ IND A Sbjct: 249 VSLHAPDDELRDTLVPINTRWKVDEVVDAARAYFD-ATGRRVSIEYAMMRDINDQAWRAD 307 Query: 301 NLIKILK---GIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L +L GI +NLIP NP PG ++ S ++D F ++ G S+ +R RG Sbjct: 308 LLGDVLTARGGIGWVHVNLIPLNPTPGSKWTASRREDEREFVRRLEAKGISTTVRDTRGS 367 Query: 357 DILAACGQLKS 367 DI ACGQL + Sbjct: 368 DIDGACGQLAA 378 >gi|320096228|ref|ZP_08027813.1| cfr family radical SAM enzyme [Actinomyces sp. oral taxon 178 str. F0338] gi|319976833|gb|EFW08591.1| cfr family radical SAM enzyme [Actinomyces sp. oral taxon 178 str. F0338] Length = 399 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 130/359 (36%), Positives = 186/359 (51%), Gaps = 27/359 (7%) Query: 21 LLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKI 80 L +G+P R Q+ + + R D MSDI +R + + P +V + Sbjct: 48 LAGMGLPP----FRADQLSRHYFERFEADPADMSDIPASMRQRVRDS---LLPPLVSGVV 100 Query: 81 SCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVR 140 S ++ R G ++E+V + R TLCVSSQ GC + C FC TG L R Sbjct: 101 SLRADAGRTVKDLWRLYDG-AQVESVLMRYPQRTTLCVSSQAGCGMACPFCATGQMGLTR 159 Query: 141 NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKS 200 NL+ EI+ QV LA++ C D P+ +++N+V MGMGEPL N+ V + Sbjct: 160 NLSTAEIVDQVRLAQA------ACRDGALAGGPT---RLTNVVFMGMGEPLANYKTVVGA 210 Query: 201 LSIASDSM--GLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPI 257 L D + G S R +T+ST G VP I R+ GE + V LA+SLHA +DLR+ L+P+ Sbjct: 211 LHRLVDPVPEGFGMSARNVTVSTVGLVPAIRRLAGEGLPVTLAVSLHAPDDDLRDDLIPV 270 Query: 258 NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL----KGIPAKI 313 N ++ + L+DA RHY L RR++ EY ++K +ND A L L KG A + Sbjct: 271 NSRWKVGELLDAARHY-FLVTGRRVSIEYALIKDMNDQVWRAQLLADELNRRGKGW-AHV 328 Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK-SLSKR 371 N IP NP PG + S ++ F ++ +G + IR RG DI ACGQL S +KR Sbjct: 329 NPIPLNPTPGSIWTASTRRSQDAFVATLRDNGVVTSIRDTRGSDIDGACGQLATSAAKR 387 >gi|312793230|ref|YP_004026153.1| radical sam enzyme, cfr family [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180370|gb|ADQ40540.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 344 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 119/336 (35%), Positives = 179/336 (53%), Gaps = 27/336 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTR-KWLLR 91 R +Q+++W+Y + D +++ E+R + F I +I+ K DG K+L Sbjct: 25 FRATQVFEWLYKKNATDVMQFTNLPLELRKKIEDEFLINSLQIL--KYQSDGESIKFLFE 82 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 C VE +V++P + +CVS+QVGC + C FC + VRNL+ E++ Q+ Sbjct: 83 L---CDKNGVE--SVFLPYRYGNAICVSTQVGCKMNCRFCASTIGGFVRNLSPGEMVDQI 137 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 + A + G++I+N+V+MG GEP N +NV K + I + G + Sbjct: 138 INAENF-----------------TGKRITNVVLMGSGEPFDNIENVFKFIEIINSKEGKN 180 Query: 212 FSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 R IT+ST G V I R+ + V LAISLHA +N LR+ LVPIN+KYP+E ++ A Sbjct: 181 IGARHITISTVGIVEGIYRLCDFPKQVNLAISLHAPNNSLRDKLVPINKKYPVEDIMKAV 240 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 +Y +N RR+TFEY ++ G+NDS A L K+LKG +NLIP NP + Sbjct: 241 DYYIKRTN-RRVTFEYALIDGVNDSIECAQELGKMLKGKLVHVNLIPVNPVEEKGFRRPS 299 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 ++ I F E ++ IR G I AACGQL+ Sbjct: 300 KEKIKAFFETLRSYQIQVTIRRELGSSISAACGQLR 335 >gi|307824047|ref|ZP_07654274.1| Radical SAM domain protein [Methylobacter tundripaludum SV96] gi|307734831|gb|EFO05681.1| Radical SAM domain protein [Methylobacter tundripaludum SV96] Length = 233 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 111/244 (45%), Positives = 144/244 (59%), Gaps = 15/244 (6%) Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLA-RSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + CSFC+TG Q L RNLT EI+ Q L A R L + PG E +I NIV Sbjct: 1 MNCSFCFTGKQGLKRNLTTSEIVGQFLQAWRWLAKNRPGEE------------RILNIVF 48 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243 MG GEPL NFD VKK+ I G S +RIT+ST+G++P + R +EI GV LA+SL Sbjct: 49 MGQGEPLHNFDAVKKACEIFLSKHGTSIGVQRITISTAGYIPGLKRWSQEIPGVNLALSL 108 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ + RN L+PIN KYPL+ ++ P L+ + IT+EY+++K ND+P DA L Sbjct: 109 HSPFEEKRNELIPINIKYPLDEVLATIDKIP-LNKKQFITYEYILIKDFNDTPDDAEKLG 167 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 IL G A INLIPFN +PG Y D I F E + + IR+ +G D+LAACG Sbjct: 168 TILAGKSAYINLIPFNSFPGSHYNRPDLDKIEKFKEVLDTFKIPTLIRSAKGDDVLAACG 227 Query: 364 QLKS 367 QL S Sbjct: 228 QLNS 231 >gi|227497538|ref|ZP_03927766.1| possible Fe-S-cluster redox protein [Actinomyces urogenitalis DSM 15434] gi|226832992|gb|EEH65375.1| possible Fe-S-cluster redox protein [Actinomyces urogenitalis DSM 15434] Length = 392 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 131/364 (35%), Positives = 187/364 (51%), Gaps = 41/364 (11%) Query: 19 EALLK-IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD 77 +A+LK G+P R Q+ + + R RD Q M+D+ R L + P+++ Sbjct: 43 KAVLKDAGLPA----FRADQLSRHYFTRFTRDAQDMTDLPASQREQLAAE---LLPDLIH 95 Query: 78 E--KISCDGTRK----WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131 E + DG R W L V +E+V + K R TLCVSSQ GC + C FC Sbjct: 96 EVRALRADGGRTIKHLWELH-------DGVRVESVLMRYKDRTTLCVSSQAGCGMACPFC 148 Query: 132 YTGTQKLVRNLTAEEILLQVLLAR--SLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 TG L RNL+ EI+ QV A S GD G P+ ++SN+V MGMGE Sbjct: 149 ATGQMGLTRNLSTGEIIEQVRHAAQVSERGDLTGG--------PA---RLSNVVFMGMGE 197 Query: 190 PLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 P+ N+ NV +L + G S R IT+ST G VP I ++ E + V LA+SLHA Sbjct: 198 PMINYKNVVAALRRLTSPAPEGFGMSARGITVSTVGLVPLIRKLSTEGMPVTLAVSLHAP 257 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++LR+ L+PIN K+ + L+DA Y + RR++ EY ++K +ND A L L Sbjct: 258 DDELRDELIPINSKWKVGELLDAAYDYYS-TTGRRVSIEYALIKDMNDHAWRAQLLADEL 316 Query: 307 KGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 A +N IP NP PG + CS+ F + ++R+G ++ +R RG DI ACG Sbjct: 317 NARGRGWAHVNPIPLNPTPGSIWTCSEPDVQELFVDTLRRAGITTTVRDTRGSDIDGACG 376 Query: 364 QLKS 367 QL + Sbjct: 377 QLAT 380 >gi|224283162|ref|ZP_03646484.1| hypothetical protein BbifN4_04969 [Bifidobacterium bifidum NCIMB 41171] gi|313140311|ref|ZP_07802504.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] gi|313132821|gb|EFR50438.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] Length = 396 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 127/368 (34%), Positives = 191/368 (51%), Gaps = 24/368 (6%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+ M +E +G+P + R Q+ + R + + +D+ R + + F Sbjct: 42 LVDMTPDERVAKAKDLGLP----KFRVKQLANHYFGRLETESEAFTDLPAATRGDIVEAF 97 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 +P ++DE + ++ R G IE+V + +R TLC+SSQVGC + C Sbjct: 98 ---FPPLIDEVTHQVADQGTTIKTLWRLFDGS-HIESVLMRYPNRTTLCISSQVGCGMGC 153 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG L RN++ EIL QV +A ++ D G V GR +SNIV MGMG Sbjct: 154 PFCATGKLGLTRNMSTGEILEQVRVAARMMRD--------GEVAGGPGR-LSNIVFMGMG 204 Query: 189 EPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 EP+ N+ +V ++ A G S R IT+ST G VP I ++ E I V LA+SLHA Sbjct: 205 EPMGNYRSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIRKLAAEGIPVRLAVSLHA 264 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 S+ LR+ LVP+N+++ ++DA Y LS+ RR++ EY +++GIND A L K Sbjct: 265 PSDALRDELVPMNKRFNTTQVLDAAHDY-FLSSKRRVSIEYALMRGINDQAEHARLLAKR 323 Query: 306 LKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 L A +N IP NP G + S +D F + + +G ++ +R RG DI AC Sbjct: 324 LNHYGDDWAHVNPIPLNPIEGSRWTASKPEDEQQFLDILHHAGITATLRDTRGSDIDGAC 383 Query: 363 GQLKSLSK 370 GQL + +K Sbjct: 384 GQLAAKTK 391 >gi|270284175|ref|ZP_05965684.2| radical SAM enzyme, Cfr family [Bifidobacterium gallicum DSM 20093] gi|270277254|gb|EFA23108.1| radical SAM enzyme, Cfr family [Bifidobacterium gallicum DSM 20093] Length = 369 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 130/371 (35%), Positives = 195/371 (52%), Gaps = 36/371 (9%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 + EE ++G+P + R +Q+ K Y + +D R Q F Sbjct: 19 LTNEERIAKAKELGLP----KFRVNQLAKHYYDHFDVNAADFTDFPAAHRGQAAQTF--- 71 Query: 72 YPEIVDE---KISCDGTR---KWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +P+++ E +++ DG W L +R IE+V + +R TLC+SSQVGC Sbjct: 72 FPQLITEVMRQVADDGQTIKTLWDLFDGSR-------IESVLMRYPNRATLCISSQVGCG 124 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG L RN++ EIL QV +A ++ EG V GR +SNIV M Sbjct: 125 MGCPFCATGQLGLTRNMSTGEILEQVRVAARMM--------REGEVAGGPGR-LSNIVFM 175 Query: 186 GMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 GMGEP+ N+ +V ++ A G S R IT+ST G VP I ++ +E + V LA+S Sbjct: 176 GMGEPMGNYKSVMSAVRQISAMPPDGFGISARNITVSTVGVVPGIRKLAQEGLPVRLAVS 235 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA S++LR+ LVP+N+++ + ++DA Y SN RR++ EY +++GIND A L Sbjct: 236 LHAPSDELRDKLVPMNKRFNTKQVLDAAHDYYLASN-RRVSIEYALMRGINDQAEHARLL 294 Query: 303 IKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 K L A +N IP NP G ++ S +D F + + R+G ++ +R RG DI Sbjct: 295 AKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQQFLDILHRAGITATMRDTRGQDID 354 Query: 360 AACGQLKSLSK 370 ACGQL + K Sbjct: 355 GACGQLAAKVK 365 >gi|312134889|ref|YP_004002227.1| radical sam enzyme, cfr family [Caldicellulosiruptor owensensis OL] gi|311774940|gb|ADQ04427.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor owensensis OL] Length = 344 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 123/354 (34%), Positives = 191/354 (53%), Gaps = 31/354 (8%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 +EL++ L IG R SQI++W+Y + D +++ E+R ++ F I + Sbjct: 11 DELKKWLENIG----EKPFRASQIFEWLYKKNATDVMQFTNLPLELREKIDDEFLINSLQ 66 Query: 75 IVDEKISCDGTR-KWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133 I++ + DG K+L + G IE+V++P + +CVS+QVGC + C FC + Sbjct: 67 ILEHQ--SDGKSIKFLFELCDK--NG---IESVFLPYRYGNAICVSTQVGCKMNCRFCAS 119 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 VRNL+A E++ Q++ ++E G++I+N+V+MG GEP N Sbjct: 120 AIGGFVRNLSAGEMVDQII-------------NVENFT----GKRITNVVLMGSGEPFDN 162 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRN 252 +NV K + I + G + R IT+ST G I R+ + V LAISLHA +N LR+ Sbjct: 163 IENVFKFIEIINSKEGKNIGARHITISTVGIAEGIYRLCDFPKQVNLAISLHAPNNRLRD 222 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312 LVP+N+KYP+E ++ A +Y +N RR+TFEY ++ G+NDS A L ++LKG Sbjct: 223 KLVPMNKKYPVEDIMKAVDYYIQKTN-RRVTFEYALIDGVNDSIECAEELGQMLKGKLVH 281 Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +NLIP NP + ++ I F E ++ IR G I AACGQL+ Sbjct: 282 VNLIPVNPVEEKGFRRPSKEKIKAFFETLRSYQIQVTIRRELGSSISAACGQLR 335 >gi|219118833|ref|XP_002180183.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217408440|gb|EEC48374.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 378 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 129/379 (34%), Positives = 201/379 (53%), Gaps = 36/379 (9%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L + + ELE ++ G H + R Q++ WI +G+ D M+++ + +R L++ Sbjct: 16 NLSTVTQAELEILMVAWG----HPKYRAQQVYNWIRQQGVTDVALMTNLPKTLRAQLSEF 71 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQVGCSL 126 EI E +S DGT ++ RC G + IE+V +P K R T C+SSQ GC+ Sbjct: 72 SKPRSLEIAAEMVSKDGT----IKRAYRCADGQM-IESVLMPYKDGRYTACISSQAGCAQ 126 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLG---------DFPGCEDIEGMVIPSVGR 177 C FC TG R LTA+EI QV + + L D G E G Sbjct: 127 GCVFCATGQMGFARQLTADEIFEQVAIFANELQQQKDQQQYIDAGGQEIQHGRAT----- 181 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG- 236 ++SN+V MGMGEPL N+ NV K+++ ++ +G+ R+IT+ST G VPNI ++ + Sbjct: 182 RLSNVVFMGMGEPLANYRNVVKAVNRITNDLGI--GARKITVSTVGIVPNIVKLTTDPDM 239 Query: 237 --VMLAISLHAVSNDLRNILVPINRKY-PLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 + LA+SLH S+ R+ L+P NR+Y L+ L+ A R Y + RRIT E+ +++G N Sbjct: 240 PPIRLAVSLHCASDKERSDLLPANRRYGGLDELMPALRDYIE-TTGRRITLEWALIQGEN 298 Query: 294 DSPRDALNLIKI-----LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSS 348 D+ A L + L+ +N+IP NP G E + ++++ F + ++ G + Sbjct: 299 DNADSARTLASLVQRYGLRRDMVHVNVIPLNPTGGFEGTPTQRQNVNVFVKTLEEHGIAC 358 Query: 349 PIRTPRGLDILAACGQLKS 367 R RG+DI A CGQL S Sbjct: 359 TPRVRRGIDIDAGCGQLTS 377 >gi|302558123|ref|ZP_07310465.1| cfr family radical SAM enzyme [Streptomyces griseoflavus Tu4000] gi|302475741|gb|EFL38834.1| cfr family radical SAM enzyme [Streptomyces griseoflavus Tu4000] Length = 368 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 127/366 (34%), Positives = 186/366 (50%), Gaps = 29/366 (7%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L + E +EA++ G R Q+ + + R D + +DI R L + Sbjct: 22 LADLTPAERKEAVVAAG----EKPFRAKQLSQHYFARYAHDPELWTDIPAGSRGKLQE-- 75 Query: 69 SIIYPEI--VDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + PE+ V +S D TRK L + + +E+V + R T+C+SSQ GC Sbjct: 76 -ALLPELMTVVRHLSTDQGTTRKTLWKLFDGTL-----VESVLMRYPDRVTMCISSQAGC 129 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EI+ Q++ L D +P ++SNIV Sbjct: 130 GMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDGE---------VPGGPARLSNIVF 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 MGMGEPL N++ V ++ +D GL S+R IT+ST G VP + R +E LAI Sbjct: 181 MGMGEPLANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAVHRFSDEGFKCRLAI 240 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++LR+ LVP+N ++ + ++DA Y S RR++ EY +++ IND Sbjct: 241 SLHAPDDELRDTLVPVNTRWKVREVLDAGFEYAARS-GRRLSIEYALIRDINDQAWRGDR 299 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++LKG P +NLIP NP PG ++ S +D F E I G IR RG +I A Sbjct: 300 LGRMLKGRPVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTIRDTRGQEIDGA 359 Query: 362 CGQLKS 367 CGQL + Sbjct: 360 CGQLAA 365 >gi|326776285|ref|ZP_08235550.1| radical SAM enzyme, Cfr family [Streptomyces cf. griseus XylebKG-1] gi|326656618|gb|EGE41464.1| radical SAM enzyme, Cfr family [Streptomyces cf. griseus XylebKG-1] Length = 368 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 120/345 (34%), Positives = 178/345 (51%), Gaps = 25/345 (7%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI--VDEKISCDG--TRKW 88 R Q+ + + R D ++I R L + ++P++ V ISCD TRK Sbjct: 42 FRAQQLSQHYFARYAHDPAEWTNIPAGSREKLAE---ALFPDLMSVMRHISCDDDTTRKT 98 Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 L + + +E+V + R T+C+SSQ GC + C FC TG L RNL+ EI+ Sbjct: 99 LWKLHDGTL-----VESVLMRYPDRVTMCISSQAGCGMNCPFCATGQAGLDRNLSTAEIV 153 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 Q++ L D +P ++SNIV MGMGEPL N++ V ++ +D Sbjct: 154 HQIVDGMRALRDGE---------VPGGPARLSNIVFMGMGEPLANYNRVVGAIRRLTDPE 204 Query: 209 --GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEM 265 GL S+R IT+ST G VP + R +E LA+SLHA ++LR+ LVP+N ++ + Sbjct: 205 PDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAVSLHAPDDELRDTLVPVNTRWNVRE 264 Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE 325 ++DA Y S RRI+ EY +++ IND L ++LKG +NLIP NP PG + Sbjct: 265 VLDAAWEYADKS-GRRISIEYALIRDINDQAWRGDRLGRLLKGKRVHVNLIPLNPTPGSK 323 Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 + S +D F E I G +R RG +I ACGQL + + Sbjct: 324 WTASRPEDEKAFVEAIAAHGVPVTVRDTRGQEIDGACGQLAAAER 368 >gi|21223996|ref|NP_629775.1| ribosomal RNA large subunit methyltransferase N [Streptomyces coelicolor A3(2)] gi|256784928|ref|ZP_05523359.1| hypothetical protein SlivT_10600 [Streptomyces lividans TK24] gi|289768821|ref|ZP_06528199.1| cfr family radical SAM enzyme [Streptomyces lividans TK24] gi|81556653|sp|O86754|RLMN_STRCO RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|3319741|emb|CAA19907.1| conserved hypothetical protein SC6A9.22c [Streptomyces coelicolor A3(2)] gi|289699020|gb|EFD66449.1| cfr family radical SAM enzyme [Streptomyces lividans TK24] Length = 368 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 128/366 (34%), Positives = 185/366 (50%), Gaps = 29/366 (7%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L + E +EA+ IG R Q+ + + R + +DI R L + Sbjct: 22 LADLTPAERKEAVAAIG----EKPFRAKQLSQHYFARYAHAPEQWTDIPAGSREGLRE-- 75 Query: 69 SIIYPEI--VDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + PE+ V +S D TRK L + + +E+V + R T+C+SSQ GC Sbjct: 76 -ALLPELMTVVRHLSTDQGTTRKTLWKLFDGTL-----VESVLMRYPDRVTMCISSQAGC 129 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EI+ Q++ L D +P ++SNIV Sbjct: 130 GMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDGE---------VPGGPARLSNIVF 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLAI 241 MGMGEPL N++ V ++ +D GL S+R IT+ST G VP I R GE LAI Sbjct: 181 MGMGEPLANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAIHRFTGEGFKCRLAI 240 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++LR+ LVP+N ++ + ++DA Y S RR++ EY +++ IND Sbjct: 241 SLHAPDDELRDTLVPVNTRWKVREVLDAGFEYAAKS-GRRLSIEYALIRDINDQAWRGDR 299 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++L+G P +NLIP NP PG ++ S +D F E I G IR RG +I A Sbjct: 300 LGRLLRGRPVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTIRDTRGQEIDGA 359 Query: 362 CGQLKS 367 CGQL + Sbjct: 360 CGQLAA 365 >gi|312876958|ref|ZP_07736933.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor lactoaceticus 6A] gi|311796273|gb|EFR12627.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor lactoaceticus 6A] Length = 344 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 119/336 (35%), Positives = 178/336 (52%), Gaps = 27/336 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTR-KWLLR 91 R +Q+++W+Y + D +++ E+R + F I I+ K DG K+L Sbjct: 25 FRATQVFEWLYKKNATDVMQFTNLPLELRKKIEDEFLINSLHIL--KYQSDGESIKFLFE 82 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 C VE +V++P + +CVS+QVGC + C FC + VRNL+ E++ Q+ Sbjct: 83 L---CDKNGVE--SVFLPYRYGNAICVSTQVGCKMNCRFCASTIGGFVRNLSPGEMVDQI 137 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 + A + G++I+N+V+MG GEP N +NV K + I + G + Sbjct: 138 INAENF-----------------TGKRITNVVLMGSGEPFDNIENVFKFIEIINSKEGKN 180 Query: 212 FSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 R IT+ST G V I R+ + V LAISLHA +N LR+ LVPIN+KYP+E ++ A Sbjct: 181 IGARHITISTVGIVEGIYRLCDFPKQVNLAISLHAPNNSLRDKLVPINKKYPVEDIMKAV 240 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 +Y +N RR+TFEY ++ G+NDS A L K+LKG +NLIP NP + Sbjct: 241 DYYIKRTN-RRVTFEYALIDGVNDSIECAQELGKMLKGKLVHVNLIPVNPVEEKGFRRPS 299 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 ++ I F E ++ IR G I AACGQL+ Sbjct: 300 KEKIKAFFETLRSYQIQVTIRRELGSSISAACGQLR 335 >gi|303228552|ref|ZP_07315380.1| 23S rRNA m2A2503 methyltransferase [Veillonella atypica ACS-134-V-Col7a] gi|302516799|gb|EFL58713.1| 23S rRNA m2A2503 methyltransferase [Veillonella atypica ACS-134-V-Col7a] Length = 348 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 118/343 (34%), Positives = 181/343 (52%), Gaps = 26/343 (7%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCD-GTRKWLL 90 + R Q+ +IY R I FQ M+ + +R L+ + + P+++ + +S D T+K LL Sbjct: 23 KFRAKQLIDYIYHRHIFVFQDMTQFPKTLRDWLDSNCIVSIPKVITQSVSPDEKTQKLLL 82 Query: 91 RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150 IE V + + ++CVSSQVGC++ C FC + L R+L+ EI+ Q Sbjct: 83 ELADHS-----RIEAVLMEQHYGNSVCVSSQVGCAMGCVFCASTQGGLFRDLSVSEIVGQ 137 Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210 V+L +L EDI +V+ MG GEPL N+DNV ++L + D M Sbjct: 138 VVLFSAL-----KQEDIHSLVV------------MGAGEPLQNYDNVLQALKLIHDPMTF 180 Query: 211 SFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 S R++T+ST G+VPNI ++ E++ + LA+SLHA +++ R ++P+ +Y L+ ++DA Sbjct: 181 DISYRKMTISTCGWVPNIYKLADEDLPITLALSLHATTDETRRKIMPVGSRYKLDEVLDA 240 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP-AKINLIPFNPWPGCEYLC 328 ++Y RRITFEY+++ IN S +A L I K P +NLIP N Sbjct: 241 VKYYYE-KTQRRITFEYILIDSINVSLEEAHELGNIGKAFPNCHVNLIPVNGNEHINLYK 299 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 K + F + + G S IR G I AACGQLK R Sbjct: 300 PSSKHMNIFKDIVASYGVSVTIRKEMGDAIQAACGQLKVAHGR 342 >gi|291299709|ref|YP_003510987.1| radical SAM enzyme, Cfr family [Stackebrandtia nassauensis DSM 44728] gi|290568929|gb|ADD41894.1| radical SAM enzyme, Cfr family [Stackebrandtia nassauensis DSM 44728] Length = 388 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 125/364 (34%), Positives = 189/364 (51%), Gaps = 27/364 (7%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH-FSIIYP 73 EE EA+ ++ P R +Q+ + Y R M+D+ R + + F + Sbjct: 28 EERREAVRELDEPA----FRANQLSRQYYTRHETSVSRMTDLPVASRDKIAEALFPALLT 83 Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133 I D + TRK L R + +E+V + R T+CVSSQ GC + C FC T Sbjct: 84 PIKDTECDDGTTRKTLYRLHDGSL-----VESVLMGYPDRATVCVSSQAGCGMACPFCAT 138 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 G L RN++ EI+ QV+ A L +GR +S++V MGMGEPL N Sbjct: 139 GQAGLTRNMSTAEIVEQVVNAARLAEQA------------KLGR-LSHVVFMGMGEPLAN 185 Query: 194 FDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDL 250 + V +L +D GL S R IT+ST G VP I R+ E++ V LA+SLHA ++L Sbjct: 186 YSRVVAALRRVTDPTPGGLGLSARHITVSTVGLVPAIRRLTDEDMSVTLAVSLHAPDDEL 245 Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310 R+ LVP+N ++ + ++DA +Y RR++ EY M++ +ND P A L ++LKG Sbjct: 246 RDELVPVNSRWKVAEVLDAAWNY-ARRTGRRVSIEYAMIRDVNDQPWRADLLGRLLKGKL 304 Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 A +NLIP NP PG ++ S + F ++ +G + +R RG DI ACGQL + + Sbjct: 305 AHVNLIPLNPTPGSKWDASPKPVEREFVARLRAAGVPTTVRDTRGRDIDGACGQLAASQQ 364 Query: 371 RIPK 374 + + Sbjct: 365 DVAQ 368 >gi|297191769|ref|ZP_06909167.1| ribosomal RNA large subunit methyltransferase N [Streptomyces pristinaespiralis ATCC 25486] gi|197721713|gb|EDY65621.1| ribosomal RNA large subunit methyltransferase N [Streptomyces pristinaespiralis ATCC 25486] Length = 368 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 126/369 (34%), Positives = 184/369 (49%), Gaps = 29/369 (7%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L + E ++A+ IG R Q+ + + R D +DI R L Sbjct: 22 LADLTPAERKDAVASIG----EKPFRAKQLSQHYFARYAHDPAQWTDIPAAAREKLATE- 76 Query: 69 SIIYPEI--VDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + P++ V ISCD TRK L R + +E+V + R T+C+SSQ GC Sbjct: 77 --LLPDLMSVVRHISCDDDTTRKTLWRLHDGTL-----VESVLMRYPDRVTMCISSQAGC 129 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EI+ Q++ L D +P ++SNIV Sbjct: 130 GMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDGE---------VPGGPARLSNIVF 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 MGMGEPL N+ V ++ +D GL S+R IT+ST G VP + R +E LA+ Sbjct: 181 MGMGEPLANYKRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAV 240 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++LR+ LVP+N ++ + ++DA Y + RRI+ EY +++ IND Sbjct: 241 SLHAPDDELRDTLVPVNTRWKVREVLDAAWEY-AEKSGRRISIEYALIRDINDQAWRGDL 299 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++LKG +NLIP NP PG ++ S +D F E I G +R RG +I A Sbjct: 300 LGRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTVRDTRGQEIDGA 359 Query: 362 CGQLKSLSK 370 CGQL + + Sbjct: 360 CGQLAAQER 368 >gi|182435651|ref|YP_001823370.1| hypothetical protein SGR_1858 [Streptomyces griseus subsp. griseus NBRC 13350] gi|205829903|sp|B1VYT2|RLMN_STRGG RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|178464167|dbj|BAG18687.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 368 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 119/345 (34%), Positives = 178/345 (51%), Gaps = 25/345 (7%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI--VDEKISCDG--TRKW 88 R Q+ + + R D ++I R L + ++P++ V ISCD TRK Sbjct: 42 FRAQQLSQHYFARYAHDPAEWTNIPAGSREKLAE---ALFPDLMSVMRHISCDDDTTRKT 98 Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 L + + +E+V + R T+C+SSQ GC + C FC TG L RNL+ EI+ Sbjct: 99 LWKLHDGTL-----VESVLMRYPDRVTMCISSQAGCGMNCPFCATGQAGLDRNLSTAEIV 153 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 Q++ L D +P ++SNIV MGMGEPL N++ V ++ +D Sbjct: 154 HQIVDGMRALRDGE---------VPGGPARLSNIVFMGMGEPLANYNRVVGAIRRLTDPE 204 Query: 209 --GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEM 265 GL S+R IT+ST G VP + R +E LA+SLHA ++LR+ LVP+N ++ + Sbjct: 205 PDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAVSLHAPDDELRDTLVPVNTRWNVRE 264 Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE 325 ++DA Y S RRI+ EY +++ IND L ++LKG +NLIP NP PG + Sbjct: 265 VLDAAWEYADKS-GRRISIEYALIRDINDQAWRGDRLGRLLKGKRVHVNLIPLNPTPGSK 323 Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 + S +D F E + G +R RG +I ACGQL + + Sbjct: 324 WTASRPEDEKAFVEAVAAHGVPVTVRDTRGQEIDGACGQLAAAER 368 >gi|87301290|ref|ZP_01084131.1| hypothetical protein WH5701_15431 [Synechococcus sp. WH 5701] gi|87284258|gb|EAQ76211.1| hypothetical protein WH5701_15431 [Synechococcus sp. WH 5701] Length = 362 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 121/355 (34%), Positives = 180/355 (50%), Gaps = 38/355 (10%) Query: 25 GIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV------DE 78 + Q R Q+ WIY +G R +S + + R L + + Sbjct: 25 AVSQGQPAFRGRQLHDWIYAKGARRLADISVLPKAWRESLTAEADPAGSDALGRSRELQR 84 Query: 79 KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKL 138 ++ DGT K LL + +ETV IP + R T+CVSSQVGC + C FC TG L Sbjct: 85 SVASDGTTKLLL-----GTADGLSLETVGIPSRDRLTVCVSSQVGCPMACRFCATGKGGL 139 Query: 139 VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVK 198 R+L EI+ QVL R ++ R+ S++V MGMGEPL D+V Sbjct: 140 QRSLAVHEIVDQVLCVREVME-----------------RRPSHVVFMGMGEPLLTIDSVL 182 Query: 199 KSLSIASDSMGLSFSKRRITLSTSGF---VPNIARVG-EEIG---VMLAISLHAVSNDLR 251 ++ +G++ +R+IT+ST G +P++A + E +G LA+SLHA LR Sbjct: 183 GAIHCLCTDLGMA--QRQITVSTVGVPSTLPSLAELALERLGRAQFTLAVSLHAPDQGLR 240 Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311 L+P YPLE L+D CR Y ++ RR++FEY++L G+ND PR A L +L+G + Sbjct: 241 EQLIPTAHAYPLEALLDDCRRYVEITG-RRVSFEYILLGGLNDHPRQAAALAALLRGFQS 299 Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +NLIP+NP ++ + + F + + +R RGLD AACGQL+ Sbjct: 300 HVNLIPYNPIEEEDFQRPSPERVEAFRRALLERHVAVSVRASRGLDEDAACGQLR 354 >gi|284992364|ref|YP_003410918.1| radical SAM enzyme, Cfr family [Geodermatophilus obscurus DSM 43160] gi|284065609|gb|ADB76547.1| radical SAM enzyme, Cfr family [Geodermatophilus obscurus DSM 43160] Length = 395 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 130/371 (35%), Positives = 193/371 (52%), Gaps = 34/371 (9%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L + REE A+ ++G P R Q+ + Y RG+ D M+D+ VR L Sbjct: 20 LADLTREEARAAVTELGQPA----FRADQLTRHFY-RGVTDPAQMTDLPAAVREELT--- 71 Query: 69 SIIYPEIVD--EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + P ++ +S DG TRK L R + +E+V + R T+C+SSQ GC Sbjct: 72 GALLPGLLTPVRTLSADGGRTRKTLWRLHDGAL-----VESVLMRYPDRATVCISSQAGC 126 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISNI 182 + C FC TG L RNL+A EI+ Q + A + + G+ PG ++SN+ Sbjct: 127 GMACPFCATGQNGLTRNLSAAEIIGQAVAAAAAMANGEVPGGPG-----------RLSNV 175 Query: 183 VMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239 V MGMGEPL N+ V+K+L + GL S+R +T+ST G VP I R+ EE + V L Sbjct: 176 VFMGMGEPLANYARVRKTLDALVTPAPHGLGLSQRSVTVSTVGVVPAIRRLTEEGLHVTL 235 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA ++LR+ LVPIN ++ + ++ A Y RR + EY +++ +ND P A Sbjct: 236 AVSLHAPDDELRDTLVPINTRWKVGEVVAAADAY-AERTGRRYSVEYALIRDVNDQPERA 294 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L ++L A +NLIP NP PG ++ S F ++ G + +R RG DI Sbjct: 295 DLLGRLLADRRAHVNLIPLNPTPGSKWDASPLPAQREFVARLRAHGVPTTVRDTRGQDID 354 Query: 360 AACGQLKSLSK 370 ACGQL + + Sbjct: 355 GACGQLAAADR 365 >gi|33241085|ref|NP_876027.1| putative Fe-S-cluster redox protein [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|81663987|sp|Q7VA32|RLMN_PROMA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|33238614|gb|AAQ00680.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 348 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 121/372 (32%), Positives = 194/372 (52%), Gaps = 37/372 (9%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LL 64 K L+G+ +LE ++ + R Q+ +W+Y +G+ + ++ + + R+ L+ Sbjct: 5 KIQLLGLDLSQLE----RLALDHGESLYRGRQLHQWLYQKGVDNLDDITVLPKAWRNSLI 60 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + S+ V+ I+ D T K LL G IETV IP +R T+CVSSQ+GC Sbjct: 61 QKGISVGGLVEVNRFIAGDRTIKLLL-----STGDGEIIETVGIPSGNRLTICVSSQIGC 115 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L R+L EI+ QV + P SN+V Sbjct: 116 PMGCQFCATGKDGLKRSLKVNEIVAQVFAVKKAFNRSP-----------------SNVVF 158 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF---VPNIARVGEE----IGV 237 MGMGEPL N + V S+ + +G+ +RRIT+ST G +P +A + + + Sbjct: 159 MGMGEPLLNIEEVLSSICCLNKDLGIG--QRRITVSTVGVKNTLPQLAELALQFLGSVQF 216 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 LA+SLHA + LR L+P + YP+++L++ CRHY L+ RR++FEY++L +ND Sbjct: 217 TLALSLHAPNQKLRESLIPSAQNYPIKLLLEDCRHYLDLT-GRRVSFEYILLGHLNDHIE 275 Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 A L ++ G + +NLI +NP G + + + F + +++ G +R RGLD Sbjct: 276 HAEELADLVGGFQSHVNLIAYNPIDGESFQRPSNQRVNIFIKTLQKRGIVVSLRASRGLD 335 Query: 358 ILAACGQLKSLS 369 AACGQL+S++ Sbjct: 336 KNAACGQLRSMN 347 >gi|145219757|ref|YP_001130466.1| radical SAM protein [Prosthecochloris vibrioformis DSM 265] gi|205829809|sp|A4SEQ5|RLMN_PROVI RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|145205921|gb|ABP36964.1| 23S rRNA m(2)A-2503 methyltransferase [Chlorobium phaeovibrioides DSM 265] Length = 373 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 124/346 (35%), Positives = 181/346 (52%), Gaps = 34/346 (9%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDG-----TRKW 88 R QI +W++ F+ M+ +S+ +R L + F+I PE+ S +G T K Sbjct: 41 RAKQIHEWLFSHRAESFEEMTTLSKALRKALEETFAITPPEVEQHDNSTEGACPGPTEKL 100 Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 LLR P + IETV IP R T C+SSQ GC+L CSFC TG+ RNLT EI Sbjct: 101 LLRLPDGAM-----IETVLIPGPGRLTACLSSQAGCALQCSFCATGSLGFKRNLTPGEIT 155 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGR--KISNIVMMGMGEPLCNFDNVKKSL-SIAS 205 Q S+L + GR KI+NIV MGMGEPL N NV ++ ++++ Sbjct: 156 GQANALNSMLA--------------ASGREQKITNIVFMGMGEPLLNTLNVFDAVETLST 201 Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPI-NRKYPL 263 S S+R+IT+ST G +P IA++ + LA+SLH+ + R L+P+ R+YPL Sbjct: 202 RGYTSSISQRKITISTVGIIPEIAKLATSGMKTKLAVSLHSAFQEKRESLMPLAARRYPL 261 Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPG 323 + L HY + +T Y++L+G+ND+ DA LI+ KINLI +N Sbjct: 262 DELQPVLAHY-AKNTGEPVTLVYMLLEGVNDTLEDARQLIRFASRFFCKINLIDYNSIVN 320 Query: 324 CEY--LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 + +CS+ +D F + + +G +R G I AACGQL + Sbjct: 321 IPFQSVCSETRD--RFRDRLLEAGLQVTLRKSYGTSIHAACGQLAA 364 >gi|310287528|ref|YP_003938786.1| radical SAM enzyme, Cfr family [Bifidobacterium bifidum S17] gi|311064441|ref|YP_003971166.1| radical SAM family protein [Bifidobacterium bifidum PRL2010] gi|309251464|gb|ADO53212.1| radical SAM enzyme, Cfr family [Bifidobacterium bifidum S17] gi|310866760|gb|ADP36129.1| Radical SAM family enzyme [Bifidobacterium bifidum PRL2010] Length = 396 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 127/368 (34%), Positives = 191/368 (51%), Gaps = 24/368 (6%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+ M +E +G+P + R Q+ + R + + +D+ R + + F Sbjct: 42 LVDMTPDERIARAKDLGLP----KFRVKQLANHYFGRLETESEAFTDLPAATRGDIVEAF 97 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 +P ++DE + ++ R G IE+V + +R TLC+SSQVGC + C Sbjct: 98 ---FPPLIDEVTHQVADQGTTIKTLWRLFDGS-HIESVLMRYPNRTTLCISSQVGCGMGC 153 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG L RN++ EIL QV +A ++ D G V GR +SNIV MGMG Sbjct: 154 PFCATGKLGLTRNMSTGEILEQVRVAARMMRD--------GEVAGGPGR-LSNIVFMGMG 204 Query: 189 EPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHA 245 EP+ N+ +V ++ A G S R IT+ST G VP I ++ E I V LA+SLHA Sbjct: 205 EPMGNYRSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIRKLTAEGIPVRLAVSLHA 264 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 S+ LR+ LVP+N+++ ++DA Y LS+ RR++ EY +++GIND A L K Sbjct: 265 PSDALRDELVPMNKRFNTTQVLDAAHDY-FLSSKRRVSIEYALMRGINDQAEHARLLAKR 323 Query: 306 LKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 L A +N IP NP G + S +D F + + +G ++ +R RG DI AC Sbjct: 324 LNHYGDDWAHVNPIPLNPIEGSRWTASKPEDEQQFLDILHHAGITATLRDTRGSDIDGAC 383 Query: 363 GQLKSLSK 370 GQL + +K Sbjct: 384 GQLAAKTK 391 >gi|239982588|ref|ZP_04705112.1| hypothetical protein SalbJ_24361 [Streptomyces albus J1074] gi|291454431|ref|ZP_06593821.1| conserved hypothetical protein [Streptomyces albus J1074] gi|291357380|gb|EFE84282.1| conserved hypothetical protein [Streptomyces albus J1074] Length = 370 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 126/369 (34%), Positives = 185/369 (50%), Gaps = 29/369 (7%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L + E +EA+ IG R Q+ + + R D +DI R L Sbjct: 24 LADLTPAERKEAVAAIG----EKPFRAKQLSQHYFARYAHDPAEWTDIPAGSREKLR--- 76 Query: 69 SIIYPEI--VDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 S + P++ V ISCD TRK L R + +E+V + R T+C+SSQ GC Sbjct: 77 SELLPDLMSVVRHISCDDDTTRKTLWRLHDGTL-----VESVLMRYPDRVTMCISSQAGC 131 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EI+ Q++ L D +P ++SNIV Sbjct: 132 GMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDGE---------VPGGPARLSNIVF 182 Query: 185 MGMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 MGMGEPL N++ V ++ +D GL S+R IT+ST G VP I R +E LA+ Sbjct: 183 MGMGEPLANYNRVTGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAIHRFADEGFKCRLAV 242 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++LR+ LVP+N ++ + ++D+ Y + RR++ EY +++ IND Sbjct: 243 SLHAPDDELRDTLVPVNTRWKVREVLDSAWEY-AEKSGRRVSIEYALIRDINDQAWRGDL 301 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++LK +NLIP NP PG ++ S +D F E I G +R RG +I A Sbjct: 302 LGRLLKNKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIASHGVPVTVRDTRGQEIDGA 361 Query: 362 CGQLKSLSK 370 CGQL + + Sbjct: 362 CGQLAATER 370 >gi|298346468|ref|YP_003719155.1| putative Fe-S-cluster redox protein [Mobiluncus curtisii ATCC 43063] gi|298236529|gb|ADI67661.1| possible Fe-S-cluster redox protein [Mobiluncus curtisii ATCC 43063] Length = 390 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 121/349 (34%), Positives = 185/349 (53%), Gaps = 22/349 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ + + R D M+D+ R + + PE++ ++ + W + Sbjct: 58 FRADQVARHYFGRFEADPAQMTDLGPADR----ERARDLLPELITPVVTQVADKGWTRKT 113 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 R G ++E+V + R TLCVSSQVGC + C FC TG L RNL+A EIL QV Sbjct: 114 LWRLFDG-AQVESVLMRYPKRVTLCVSSQVGCGMGCPFCATGQLGLTRNLSAAEILEQVR 172 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGL 210 LA +D E + PS ++SN+V MGMGEPL N+ ++ ++ A G Sbjct: 173 LAAK------AAQDGE-LGSPS---RLSNLVFMGMGEPLANYKSLLHTIRTLTAEVPQGF 222 Query: 211 SFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 S R + +ST G VP I ++ +E + V LA+SLHA ++LRN L+P+NR+Y ++ L+D Sbjct: 223 GISARNLVVSTVGLVPGIRKLTQEGLPVTLAVSLHAPDDELRNELIPMNRRYQVDELLDT 282 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIPAKINLIPFNPWPGCEY 326 Y + RR++ EY +++ +ND P A L L A +N IP NP PG + Sbjct: 283 AYAY-FQATGRRVSIEYALIRDMNDHPWRAQLLADKLNERGKTWAHVNPIPLNPTPGSIW 341 Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKV 375 S + + F E ++++G S+ +R RG DI ACGQL + +K+ P Sbjct: 342 DASLPRVMDEFMEILRQAGISTTLRDTRGSDIDGACGQLAAKAKQSPAA 390 >gi|297621026|ref|YP_003709163.1| putative Fe-S-cluster redox enzyme, Cfr family [Waddlia chondrophila WSU 86-1044] gi|297376327|gb|ADI38157.1| putative Fe-S-cluster redox enzyme, Cfr family [Waddlia chondrophila WSU 86-1044] Length = 359 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 115/306 (37%), Positives = 171/306 (55%), Gaps = 34/306 (11%) Query: 73 PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132 PEI + D RK L+RF + +E+V IP + +LCVSSQ GC + C+FC Sbjct: 66 PEISHQLTDGD-VRKLLIRFDDGNV-----VESVVIPMQFGLSLCVSSQAGCRMGCTFCQ 119 Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192 TG L R+L +EEI+ Q +AR +L +P I NIV MGMGEP+ Sbjct: 120 TGRIGLKRHLRSEEIVAQGFIARHVLR------------LP-----IRNIVFMGMGEPMD 162 Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI--GVMLAISLHAVSNDL 250 NFD V +++ + SD G++F R +T+ST G V I R E+ V LA+S++A ++ L Sbjct: 163 NFDAVSQAIKVFSDQGGMAFGMRHLTVSTVGRVDGIRRFVSEVNPAVNLAVSINAPNDAL 222 Query: 251 RNILVPINRKYPL----EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 R L+P+ RKY L E L+D C H R + YV++KG+NDS A L + Sbjct: 223 RKTLMPLTRKYSLGTIKEALLDYCSH-----PRRSVLIGYVLIKGVNDSLELADELAAYI 277 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 KG+ AK+NLIP+NP Y + + + F+ ++ G S+ +R +G +++AACGQL Sbjct: 278 KGLRAKVNLIPYNPQESDPYETPESESVNAFAARLRAQGVSTLLRQTKGDEMMAACGQLG 337 Query: 367 SLSKRI 372 ++K + Sbjct: 338 GVNKSV 343 >gi|239944638|ref|ZP_04696575.1| hypothetical protein SrosN15_26832 [Streptomyces roseosporus NRRL 15998] gi|239991102|ref|ZP_04711766.1| hypothetical protein SrosN1_27614 [Streptomyces roseosporus NRRL 11379] gi|291448102|ref|ZP_06587492.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291351049|gb|EFE77953.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 368 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 119/342 (34%), Positives = 176/342 (51%), Gaps = 25/342 (7%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD--EKISCDG--TRKW 88 R Q+ + + R D ++I R L + ++PE++ ISCD TRK Sbjct: 42 FRAQQLSQHYFARYAHDPAEWTNIPAASREKLAE---ALFPELMSVIRHISCDDDTTRKT 98 Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 L + + +E+V + R T+C+SSQ GC + C FC TG L RNL+ EI+ Sbjct: 99 LWKLHDGTL-----VESVLMRYPERVTMCISSQAGCGMNCPFCATGQAGLDRNLSTAEIV 153 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 Q++ L D +P ++SNIV MGMGEPL N+ V ++ +D Sbjct: 154 HQIVDGMRALRDGE---------VPGGPARLSNIVFMGMGEPLANYKRVVGAIRRLTDPE 204 Query: 209 --GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEM 265 GL S+R IT+ST G VP + R +E LA+SLHA ++LR+ LVP+N ++ + Sbjct: 205 PDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAVSLHAPDDELRDTLVPVNTRWKVRE 264 Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE 325 ++DA Y + RRI+ EY +++ IND L ++LKG +NLIP NP PG + Sbjct: 265 VLDAAWEY-AEKSGRRISIEYALIRDINDQAWRGDLLGRLLKGKRVHVNLIPLNPTPGSK 323 Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 + S +D F E I G +R RG +I ACGQL + Sbjct: 324 WTASRPEDEKAFVEAIAAHGVPVTVRDTRGQEIDGACGQLAA 365 >gi|257785159|ref|YP_003180376.1| radical SAM enzyme, Cfr family [Atopobium parvulum DSM 20469] gi|257473666|gb|ACV51785.1| radical SAM enzyme, Cfr family [Atopobium parvulum DSM 20469] Length = 372 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 115/361 (31%), Positives = 179/361 (49%), Gaps = 28/361 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K L + E++ + + +G P + R QI +WI+ +G F MS++ + +R L+ Sbjct: 32 KSDLRSLSSEQILDLVTSLGQP----KFRAKQIEEWIWSKGATSFDQMSNLPKTLREELS 87 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + E V ++S DG+RK+LLR+P +E V +P ++ ++C S+Q GC+ Sbjct: 88 KQVILAGAEQVVRQVSEDGSRKYLLRYP-----DGTSVECVGMPNGNKLSVCASTQAGCA 142 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC TG L R+L+A EI QV+ R DF +++++V+M Sbjct: 143 MGCAFCATGASGLTRSLSASEIYEQVMHVRD---DFD--------------TRVTSVVLM 185 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G GEP N+D ++ + G R IT+ST G +P I R E LA+SLH Sbjct: 186 GQGEPFMNYDATLTAMRRLNSPDGAGIGARHITVSTCGVIPMIKRFASEPEQFTLAVSLH 245 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 + R+ L+P RKY L L D Y RR T+EY ++KG+NDS + L Sbjct: 246 SAVQKTRDALMPGVRKYSLIHLYDIMGEYVD-KTGRRPTYEYALIKGVNDSDNELGALRD 304 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +G +N+I N G ++ + F + G + IR RG DI AACGQ Sbjct: 305 FCRGTLCHVNIIQLNEIEGSKFHPTSPARAQEFVNSLNSVGVEATIRLSRGSDIDAACGQ 364 Query: 365 L 365 L Sbjct: 365 L 365 >gi|238063328|ref|ZP_04608037.1| radical SAM domain-containing protein [Micromonospora sp. ATCC 39149] gi|237885139|gb|EEP73967.1| radical SAM domain-containing protein [Micromonospora sp. ATCC 39149] Length = 363 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 117/353 (33%), Positives = 184/353 (52%), Gaps = 25/353 (7%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEIVDEKISCD--GTRKW 88 R Q+ + R +RD M+D+ +R L +++ P +++CD TRK Sbjct: 26 FRAKQMSTHYFGRLVRDPASMTDLPAAIRDRLAGELLPTLLTPV---RELACDDGATRKA 82 Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 L R + +E+V + R T+C+SSQ GC + C FC TG L RNL+ EI+ Sbjct: 83 LWRLHDGSL-----VESVLMGYPDRVTVCISSQAGCGMACPFCATGQAGLTRNLSTAEIV 137 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASD 206 Q + + + ++S++V MGMGEPL N+ V ++ +A Sbjct: 138 DQAVYLAGV---------AASGAVAGSPPRLSHVVFMGMGEPLANYSRVVAAIRRLVAPV 188 Query: 207 SMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEM 265 GL S+R IT+ST G VP I R+ E++ V LA+SLHA ++LR+ LVP+N+++ + Sbjct: 189 PEGLGLSQRHITVSTVGLVPAIRRLASEDLSVTLALSLHAPDDELRDELVPVNQRWKVAE 248 Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE 325 ++DA Y RR++ EY M+K +ND P A L ++L G +NLIP NP PG Sbjct: 249 VLDAAWDY-AARTGRRVSIEYAMIKNVNDQPWRADLLGQLLAGRLTHVNLIPLNPTPGSR 307 Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQ 378 + S + F ++ +G S+ +R RG +I ACGQL + R + P++ Sbjct: 308 WDASPKPVEREFVRRLRAAGVSTTVRDTRGREIDGACGQLAAAGDRDTETPQE 360 >gi|329947859|ref|ZP_08294791.1| 23S rRNA m2A2503 methyltransferase [Actinomyces sp. oral taxon 170 str. F0386] gi|328523483|gb|EGF50581.1| 23S rRNA m2A2503 methyltransferase [Actinomyces sp. oral taxon 170 str. F0386] Length = 391 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 127/349 (36%), Positives = 179/349 (51%), Gaps = 36/349 (10%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD--EKISCDGTRK--- 87 R QI + + RD M+D+ R Q + + PE++ + DG R Sbjct: 54 FRADQISRHYFTHLTRDGADMTDLPASQR---EQLCAELLPELISPVRALRADGGRTIKH 110 Query: 88 -WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEE 146 W L V +E+V + K R TLCVSSQ GC + C FC TG L RNL+ E Sbjct: 111 LWELH-------DGVRVESVLMRYKDRTTLCVSSQAGCGMACPFCATGQMGLTRNLSTAE 163 Query: 147 ILLQVLLA--RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS-- 202 I+ QV A S GD G P+ ++SN+V MGMGEP+ N+ NV +L Sbjct: 164 IVEQVRHAAQTSAAGDLTGG--------PA---RLSNVVFMGMGEPMVNYRNVVGALHRL 212 Query: 203 IASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKY 261 I G S R IT+ST G VP I R+ GE + V LA+SLHA ++LR+ L+P+N ++ Sbjct: 213 IDPAPEGFGMSARGITVSTVGLVPLIRRLAGEGLPVTLAVSLHAPDDELRDELIPVNSRW 272 Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIPAKINLIPF 318 + L+DA Y L+ RR++ EY ++K +ND A L L A +N IP Sbjct: 273 KVGELLDAAHDY-FLATGRRVSIEYALIKDMNDHSWRAQLLADELNRRDAGWAHVNPIPL 331 Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 NP PG + CS+ F + ++R+G ++ +R RG DI ACGQL + Sbjct: 332 NPTPGSIWTCSEVAVQDMFVDTLRRAGITTTVRDTRGSDIDGACGQLAT 380 >gi|227833380|ref|YP_002835087.1| hypothetical protein cauri_1556 [Corynebacterium aurimucosum ATCC 700975] gi|262184366|ref|ZP_06043787.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium aurimucosum ATCC 700975] gi|227454396|gb|ACP33149.1| hypothetical protein cauri_1556 [Corynebacterium aurimucosum ATCC 700975] Length = 368 Score = 186 bits (473), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 117/356 (32%), Positives = 180/356 (50%), Gaps = 31/356 (8%) Query: 19 EALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE 78 EAL ++G+P + R Q+ K YV D M+DI R + + E + + Sbjct: 31 EALAELGLP----KFRAKQLAKHYYVHHTADVSEMTDIPAAAREAVQERLFPTLMEPIRQ 86 Query: 79 KISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137 + DG T K L R + +E+V + R TLC+SSQ GC + C FC TG Sbjct: 87 TSTDDGETTKSLWRLHDGTL-----LESVLMRYPGRATLCISSQAGCGMACPFCATGQGG 141 Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197 L RNL+ EI+ Q A L+ + G ++SN+V MGMGEPL N+ V Sbjct: 142 LDRNLSTAEIVEQFRHAARLMEE--------------EGGRLSNVVFMGMGEPLANYKRV 187 Query: 198 KKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNIL 254 ++ S+ G S+R +T+ST G P I ++ E++ LA+SLH ++LR+ L Sbjct: 188 VHAVRQITGSELTGFGLSQRNVTVSTVGLAPAIRKLADEDLSCTLAVSLHTPDDELRDTL 247 Query: 255 VPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIPA 311 VP+N ++P+E ++DA ++Y S RR++ EY +++ ND A L + L G Sbjct: 248 VPVNNRWPVEEVLDAAKYYADKS-GRRVSIEYALIRDKNDQDFRADMLGRKLHAALGSKV 306 Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 +N+IP NP PG E+ + + F + G +R +G +I AACGQL + Sbjct: 307 HVNVIPLNPTPGSEWDAAPKARQDEFVRRVIAQGVPCTVRDTKGDEIAAACGQLAA 362 >gi|306822705|ref|ZP_07456083.1| cfr family radical SAM enzyme [Bifidobacterium dentium ATCC 27679] gi|304554250|gb|EFM42159.1| cfr family radical SAM enzyme [Bifidobacterium dentium ATCC 27679] Length = 393 Score = 186 bits (473), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 126/358 (35%), Positives = 193/358 (53%), Gaps = 30/358 (8%) Query: 23 KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE---K 79 ++G+P R R Q+ Y D + SD R + F +P ++ E + Sbjct: 57 ELGLP----RFRVKQLANHYYGHFDVDAEEFSDFPANKRAEAAEAF---FPTLITEVTRQ 109 Query: 80 ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV 139 ++ +GT ++ R G + IE+V + +R TLC+SSQVGC + C FC TG L Sbjct: 110 VADEGT---TIKTLWRLFDGSL-IESVLMRYPTRTTLCISSQVGCGMGCPFCATGKLGLT 165 Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199 RN++A EI+ QV +A + D G V GR +SNIV MGMGEP+ N+ +V Sbjct: 166 RNMSAGEIVEQVRVAAKAMRD--------GEVAGGPGR-LSNIVFMGMGEPMGNYRSVLS 216 Query: 200 SLS--IASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVP 256 ++ A G S R IT+ST G VP I ++ E I V LA+SLHA S++LR+ LVP Sbjct: 217 AVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVP 276 Query: 257 INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP---AKI 313 +N+++ + ++DA Y L++ RR++ EY +++GIND A L K L A + Sbjct: 277 MNKRFDITQVLDAAHDYY-LASKRRVSIEYALMRGINDQAEHARLLAKRLNHYGDNWAHV 335 Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 N IP NP G ++ S +D F + + ++G ++ +R RG DI ACGQL + ++ Sbjct: 336 NPIPLNPIEGSKWTASKPEDERRFLDILHQAGVTATLRDTRGQDIDGACGQLAAKERQ 393 >gi|282861394|ref|ZP_06270459.1| radical SAM enzyme, Cfr family [Streptomyces sp. ACTE] gi|282564052|gb|EFB69589.1| radical SAM enzyme, Cfr family [Streptomyces sp. ACTE] Length = 368 Score = 186 bits (473), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 125/369 (33%), Positives = 187/369 (50%), Gaps = 29/369 (7%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L + +E +EA+ IG R Q+ + + R D ++I R L + Sbjct: 22 LADLTPDERKEAVAAIG----EKPFRAKQLSQHYFARYAHDPAEWTNIPAGSRDRLAE-- 75 Query: 69 SIIYPEI--VDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 ++P++ V ISCD TRK L + + +E+V + R T+C+SSQ GC Sbjct: 76 -AMFPDLMSVVRHISCDDDTTRKTLWKLHDGTL-----VESVLMRYPYRVTMCISSQAGC 129 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EI+ Q++ L D +P ++SNIV Sbjct: 130 GMNCPFCATGQAGLDRNLSTAEIVHQIVDGMRALRDGE---------VPGGPARLSNIVF 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 MGMGEPL N+ V ++ +D GL S+R IT+ST G VP + R +E LA+ Sbjct: 181 MGMGEPLANYKRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAV 240 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++LR+ LVP+N ++ + ++DA Y + RRI+ EY +++ IND Sbjct: 241 SLHAPDDELRDTLVPVNTRWKVREVLDAAWEY-AEKSGRRISIEYALIRDINDQAWRGDL 299 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++LKG +NLIP NP PG ++ S +D F E I G +R RG +I A Sbjct: 300 LGRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTVRDTRGQEIDGA 359 Query: 362 CGQLKSLSK 370 CGQL + + Sbjct: 360 CGQLAAAER 368 >gi|72161087|ref|YP_288744.1| ribosomal RNA large subunit methyltransferase N [Thermobifida fusca YX] gi|123760876|sp|Q47S46|RLMN_THEFY RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|71914819|gb|AAZ54721.1| Conserved hypothetical protein 48 [Thermobifida fusca YX] Length = 365 Score = 186 bits (473), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 124/347 (35%), Positives = 184/347 (53%), Gaps = 35/347 (10%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD--EKISCDG--TRKW 88 R Q+ + + R D M+D+ R L + + P+++ + ++CD TRK Sbjct: 39 FRARQLAQHYFGRLEADTARMTDLPAASRERLGE---ALLPQLLTPVKHVTCDNGMTRKT 95 Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 L R G V +E+V + R TLCVSSQ GC + C FC TG L RNL+ EI+ Sbjct: 96 LWR----AFDG-VLVESVLMRYPDRVTLCVSSQAGCGMNCPFCATGQAGLTRNLSTAEIV 150 Query: 149 LQVL-----LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI 203 QV+ LAR + PG +ISNIV MGMGEPL N+ V ++ Sbjct: 151 DQVVSSARDLARGTVAGGPG--------------RISNIVFMGMGEPLANYKRVLAAIRR 196 Query: 204 ASDSM--GLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRK 260 +D + GL S+R IT+ST G VP I ++ E + V LA+SLHA ++LR+ LVP+N + Sbjct: 197 ITDPVPDGLGISQRGITVSTVGLVPAIEKLTAERMQVRLAVSLHAPDDELRDELVPVNHR 256 Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 + + ++DA Y + RR++ EY +++ IND A L +++ G A +NLIP NP Sbjct: 257 WKVAEVLDAAWRYAD-TTGRRVSIEYALIRDINDQAWRADLLGRLVAGRLAHVNLIPLNP 315 Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 PG ++ S + F ++ G S +R RG +I ACGQL + Sbjct: 316 TPGSKWTASRPEVEREFVRRLRSHGVSVTVRDTRGREIDGACGQLAA 362 >gi|227488624|ref|ZP_03918940.1| possible Fe-S-cluster redox protein [Corynebacterium glucuronolyticum ATCC 51867] gi|227091518|gb|EEI26830.1| possible Fe-S-cluster redox protein [Corynebacterium glucuronolyticum ATCC 51867] Length = 398 Score = 186 bits (473), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 128/381 (33%), Positives = 195/381 (51%), Gaps = 38/381 (9%) Query: 14 REELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYP 73 ++E E L ++G+P + R +QI + Y R D + M+D+ + VR + + ++P Sbjct: 30 KDERIEILKELGLP----KFRDNQIARHYYGRFEADPELMTDLPESVRTTVGEK---LFP 82 Query: 74 EI---VDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129 ++ V E + DG T+K L + + +E+V + R TLC+SSQ GC + C Sbjct: 83 QLMSPVRETSADDGKTQKMLWKLHDGTL-----LESVLMEYPDRATLCISSQAGCGMACP 137 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 FC TG L RNL+ EI+ QV A + + G ++SNIV MGMGE Sbjct: 138 FCATGQGGLDRNLSTGEIVDQVRAA--------------AATMQAKGGRLSNIVFMGMGE 183 Query: 190 PLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 PL N++ V ++ G S+R ITLST G P I R E + LA+SLH Sbjct: 184 PLANYNRVLSAIRQITQPSPEGFGISQRGITLSTVGLAPAIRRFAAEGLSCRLAVSLHTP 243 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++LR+ LVP N ++ + ++DA R Y S RR++ EY +++ IND P A L K L Sbjct: 244 DDELRDSLVPANNRWSIAEVLDAAREYAEAS-GRRVSIEYALIRDINDQPWRADLLGKKL 302 Query: 307 KGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 G +NLIP NP PG ++ S ++ F + + G + +R RG +I AACG Sbjct: 303 HGALGSKVHVNLIPLNPTPGSKWDASPKRVQDEFQKRVIARGVTCTVRDTRGQEIAAACG 362 Query: 364 QLKSLSKRIPKVPRQEMQITG 384 QL + +R R+ + T Sbjct: 363 QLAA-EERTGAAARRAKEATA 382 >gi|302844849|ref|XP_002953964.1| hypothetical protein VOLCADRAFT_121224 [Volvox carteri f. nagariensis] gi|300260776|gb|EFJ44993.1| hypothetical protein VOLCADRAFT_121224 [Volvox carteri f. nagariensis] Length = 438 Score = 186 bits (473), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 129/375 (34%), Positives = 196/375 (52%), Gaps = 44/375 (11%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL--- 64 +++G ELE+ + G P R R Q+ + + ++G + ++ I + R L Sbjct: 91 TILGSELTELEDLAERYGQP----RFRAKQLLEGV-LKGAHSVEEITAIPKSWRAQLLAD 145 Query: 65 --NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 S ++ + DE DGTRK+LL+ I +ETV IP + R T+CVSSQV Sbjct: 146 GVRSGRSRLHHSVGDE----DGTRKFLLQLHDGRI-----VETVGIPTEDRLTVCVSSQV 196 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C+FC TG RNL EIL QVL + L GR++SN+ Sbjct: 197 GCPMRCTFCATGKGGFARNLAPHEILDQVLTVQEQL-----------------GRRVSNV 239 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN-IARV-GEEIGVMLA 240 V MGMGEPL N V ++ + +G+ + IT+ST G VPN I R+ + LA Sbjct: 240 VFMGMGEPLLNLPAVVRAYQGLNQQVGIGGAF--ITISTVG-VPNAIPRLAASSLKATLA 296 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA + LR L+P + YPLE LI C Y ++ RR+TFEY +L G+ND A Sbjct: 297 VSLHAPNQALRERLIPSAKAYPLEALIQDCVTYYRIT-GRRVTFEYTLLSGVNDELEHAR 355 Query: 301 NLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 L +L+ + + +N+IP+NP E++ + + F ++ +G + +R RGL+ Sbjct: 356 ELTALLRRHDLMSHVNIIPWNPVDESEFVRPSRNRVFAFRRAVEAAGLACTVRETRGLEA 415 Query: 359 LAACGQLKSLSKRIP 373 AACGQL++ ++ P Sbjct: 416 AAACGQLRNRFQKQP 430 >gi|227547301|ref|ZP_03977350.1| possible Fe-S-cluster redox enzyme [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227212260|gb|EEI80156.1| possible Fe-S-cluster redox enzyme [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 389 Score = 186 bits (473), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 111/271 (40%), Positives = 159/271 (58%), Gaps = 16/271 (5%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 IE+V + +R TLC+SSQVGC + C FC TG L RN++ EI+ QV +A ++ D Sbjct: 126 IESVLMRYPTRTTLCISSQVGCGMGCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMRD-- 183 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLS 220 G V GR +SNIV MGMGEP+ N+++V ++ A G S R IT+S Sbjct: 184 ------GEVAGGEGR-LSNIVFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVS 236 Query: 221 TSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279 T G VP I ++ E I V LA+SLHA S++LR+ LVP+N+++ + ++DA Y L++ Sbjct: 237 TVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTKQVLDAAHDY-WLASK 295 Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVT 336 RR++ EY +++GIND A L K L A +N IP NP G ++ S +D Sbjct: 296 RRVSIEYALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQR 355 Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 F E + RSG ++ +R RG DI ACGQL + Sbjct: 356 FLEILHRSGITATLRDTRGQDIDGACGQLAA 386 >gi|227504805|ref|ZP_03934854.1| possible Fe-S-cluster redox protein [Corynebacterium striatum ATCC 6940] gi|227198655|gb|EEI78703.1| possible Fe-S-cluster redox protein [Corynebacterium striatum ATCC 6940] Length = 372 Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 120/371 (32%), Positives = 186/371 (50%), Gaps = 31/371 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 L + + ++E L ++G+P + R +Q+ K YV D + M+DI R Sbjct: 20 LPPKHFADLTQDERIAVLAELGLP----KFRANQLAKHYYVHRTADVEEMTDIPANKRAE 75 Query: 64 LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L + E + + + DG T K L R + +E+V + R TLC+SSQ Sbjct: 76 LQERLFPNLMEPIRQTSTDDGETTKSLWRLHDGTM-----LESVLMRYPGRATLCISSQA 130 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RNL+ EI+ Q LA L+ D G +++N+ Sbjct: 131 GCGMACPFCATGQGGLDRNLSTAEIVEQFRLAAKLMED--------------EGGRLTNV 176 Query: 183 VMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239 V MGMGEPL N+ V ++ D G S+R +T+ST G P I ++ E++ L Sbjct: 177 VFMGMGEPLANYKRVVHAVRQITGQDLEGFGLSQRNVTVSTVGLAPAIRKLADEDLSCTL 236 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH ++LR+ LVP+N ++P+E ++DA R+Y S RR++ EY +++ ND A Sbjct: 237 AVSLHTPDDELRDSLVPVNNRWPVEEVLDAARYYADKS-GRRVSIEYALIRDKNDQDFRA 295 Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L + L G +N+IP NP PG E+ + + F + G +R +G Sbjct: 296 DMLGQKLHRALGSKVHVNVIPLNPTPGSEWDAAPKARQDEFVRRVIAQGVPCTVRDTKGD 355 Query: 357 DILAACGQLKS 367 +I AACGQL + Sbjct: 356 EIAAACGQLAA 366 >gi|304389793|ref|ZP_07371752.1| cfr family radical SAM enzyme [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326969|gb|EFL94208.1| cfr family radical SAM enzyme [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 390 Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 120/349 (34%), Positives = 186/349 (53%), Gaps = 22/349 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ + + R D M+D++ R + + PE++ ++ + W + Sbjct: 58 FRADQVARHYFGRFEADPAQMTDLAPADR----ERARDLLPELITPVVTQVADKGWTRKT 113 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 R G ++E+V + R TLCVSSQVGC + C FC TG L RNL+A EIL QV Sbjct: 114 LWRLFDG-AQVESVLMRYPKRVTLCVSSQVGCGMGCPFCATGQLGLTRNLSAAEILEQVR 172 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGL 210 LA +D E + P+ ++SN+V MGMGEPL N+ ++ ++ A G Sbjct: 173 LAAR------AAQDGE-LGSPA---RLSNLVFMGMGEPLANYKSLLHTIRTLTAEVPQGF 222 Query: 211 SFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 S R + +ST G VP I ++ +E + V LA+SLHA ++LRN L+P+NR+Y ++ L+D Sbjct: 223 GISARNLVVSTVGLVPGIRKLTQEGLPVTLAVSLHAPDDELRNELIPMNRRYQVDELLDT 282 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIPAKINLIPFNPWPGCEY 326 Y + RR++ EY +++ +ND P A L L A +N IP NP PG + Sbjct: 283 AYAY-FQATGRRVSIEYALIRDMNDHPWRAQLLADKLNERGKTWAHVNPIPLNPTPGSIW 341 Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKV 375 S + + F E ++++G S+ +R RG DI ACGQL + +K+ P Sbjct: 342 DASLPRVMDEFMEILRQAGISTTLRDTRGSDIDGACGQLAAKAKQSPAA 390 >gi|307104499|gb|EFN52752.1| hypothetical protein CHLNCDRAFT_36696 [Chlorella variabilis] Length = 336 Score = 186 bits (472), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 123/343 (35%), Positives = 185/343 (53%), Gaps = 35/343 (10%) Query: 40 KWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKI-SCDGTRKWLLRFPARCIG 98 K + G R ++ +S+++R L + ++ + S DGTRK+LL+ Sbjct: 12 KQLRDAGARSVHDVTTLSKDLRAQLAERGVRTGRSVLHHSVASPDGTRKFLLQL----AD 67 Query: 99 GPVEIETVYIP----EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLA 154 G V +E V IP ++ R T+CVSSQVGC + C+FC TG RNL EI+ QVL Sbjct: 68 GRV-VEAVGIPADGGDRRRLTVCVSSQVGCPMRCTFCATGKGGFARNLLPHEIVDQVL-- 124 Query: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSK 214 V G+++SNIV MGMGEPL N +V ++ I + +G+ Sbjct: 125 ---------------TVQEEFGQRVSNIVFMGMGEPLLNLPSVLRAHEILNKDVGV--GA 167 Query: 215 RRITLSTSGFVPN-IARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 R IT+ST G VPN I R+ ++ LA+S+HA S LR +VP R YPL+ L+ C+ Sbjct: 168 RHITISTVG-VPNAIRRMARLQLQSTLAVSIHAPSQALRETIVPSARAYPLDALMADCQE 226 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILK--GIPAKINLIPFNPWPGCEYLCSD 330 Y LS RR+TFEY +L G+ND A L +L+ + + +NLIP+NP E+ Sbjct: 227 YFRLSG-RRVTFEYTLLAGVNDGVGQAEELAALLRRHDLRSHVNLIPWNPVDDSEFQRPT 285 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIP 373 ++ + F+ +++ G +R RGL+ AACGQL++ ++ P Sbjct: 286 RRAVQAFAAALEQRGIPVSVRHTRGLEAAAACGQLRNQHQKTP 328 >gi|171742890|ref|ZP_02918697.1| hypothetical protein BIFDEN_02007 [Bifidobacterium dentium ATCC 27678] gi|171278504|gb|EDT46165.1| hypothetical protein BIFDEN_02007 [Bifidobacterium dentium ATCC 27678] Length = 393 Score = 186 bits (471), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 126/358 (35%), Positives = 192/358 (53%), Gaps = 30/358 (8%) Query: 23 KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE---K 79 ++G+P R R Q+ Y D + SD R + F +P ++ E + Sbjct: 57 ELGLP----RFRVKQLANHYYGHFDVDAEEFSDFPANKRAEAAEAF---FPTLITEVTRQ 109 Query: 80 ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV 139 ++ +GT ++ R G + IE+V + +R TLC+SSQVGC + C FC TG L Sbjct: 110 VADEGT---TIKTLWRLFDGSL-IESVLMRYPTRTTLCISSQVGCGMGCPFCATGKLGLT 165 Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199 RN++A EI+ QV +A + D G V GR +SNIV MGMGEP+ N+ +V Sbjct: 166 RNMSAGEIVEQVRVAAKAMRD--------GEVAGGPGR-LSNIVFMGMGEPMGNYRSVLS 216 Query: 200 SLS--IASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVP 256 ++ A G S R IT+ST G VP I ++ E I V LA+SLHA S++LR+ LVP Sbjct: 217 AVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVP 276 Query: 257 INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP---AKI 313 +N+++ ++DA Y L++ RR++ EY +++GIND A L K L A + Sbjct: 277 MNKRFDTTQVLDAAHDYY-LASKRRVSIEYALMRGINDQAEHARLLAKRLNHYGDNWAHV 335 Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 N IP NP G ++ S +D F + + ++G ++ +R RG DI ACGQL + ++ Sbjct: 336 NPIPLNPIEGSKWTASKPEDERRFLDILHQAGVTATLRDTRGQDIDGACGQLAAKERQ 393 >gi|297184182|gb|ADI20301.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11] Length = 302 Score = 186 bits (471), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 118/317 (37%), Positives = 168/317 (52%), Gaps = 21/317 (6%) Query: 53 MSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS 112 M+++S+ R LLN HF E+ + S DGT K ++ +E+V IP + Sbjct: 1 MTNLSKATRELLNAHFEFKQLEVDVMQQSNDGTIKNAVKLHDGAF-----VESVLIPTEK 55 Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172 R T CVSSQVGCSL C+FC T K +RNL +EI QV++ D G E Sbjct: 56 RITACVSSQVGCSLDCTFCATAGLKRMRNLDPDEIYDQVVVI-----DRQGKEHF----- 105 Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232 GR ++NIV MGMGEPL N++NV ++ +D GL S +RITLST G VP + + Sbjct: 106 ---GRPLTNIVFMGMGEPLLNYNNVLAAIDKITDPKGLGMSPKRITLSTIG-VPKLIKKM 161 Query: 233 EEIGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 + GV LAISLH+ + R L+P+ + + + Y R +TFEYV+ + Sbjct: 162 ADDGVRFGLAISLHSAIEEKRAKLMPLAHRSTTLVDLRESLQYWYAKTGRGVTFEYVIWR 221 Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI 350 IND+ DA+ L K IP K+N+I +NP Y + Q + + ++ + + Sbjct: 222 DINDTEEDAIALAKFCGAIPTKVNIIQYNPIDNGPYTQASQAAVDLYKRILEERRIIATV 281 Query: 351 RTPRGLDILAACGQLKS 367 R RG DI AACGQL + Sbjct: 282 RHSRGQDIDAACGQLAN 298 >gi|239621375|ref|ZP_04664406.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515836|gb|EEQ55703.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 389 Score = 186 bits (471), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 110/271 (40%), Positives = 159/271 (58%), Gaps = 16/271 (5%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 IE+V + +R TLC+SSQVGC + C FC TG L RN++ EI+ QV +A ++ D Sbjct: 126 IESVLMRYPTRTTLCISSQVGCGMDCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMRD-- 183 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLS 220 G V GR +SNIV MGMGEP+ N+++V ++ A G S R IT+S Sbjct: 184 ------GEVAGGEGR-LSNIVFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVS 236 Query: 221 TSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279 T G VP I ++ E I V LA+SLHA S++LR+ LVP+N+++ + ++DA Y L++ Sbjct: 237 TVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTKQVLDAAHDY-WLASK 295 Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVT 336 RR++ EY +++GIND A L K L A +N IP NP G ++ S +D Sbjct: 296 RRVSIEYALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQR 355 Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 F E + R+G ++ +R RG DI ACGQL + Sbjct: 356 FLEILHRAGITATLRDTRGQDIDGACGQLAA 386 >gi|315655038|ref|ZP_07907942.1| cfr family radical SAM enzyme [Mobiluncus curtisii ATCC 51333] gi|315490694|gb|EFU80315.1| cfr family radical SAM enzyme [Mobiluncus curtisii ATCC 51333] Length = 390 Score = 186 bits (471), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 120/349 (34%), Positives = 185/349 (53%), Gaps = 22/349 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ + + R D M+D+ R + + PE++ ++ + W + Sbjct: 58 FRADQVARHYFGRFEADPAQMTDLGPADR----ERARDLLPELITPVVTQVADKGWTRKT 113 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 R G ++E+V + R TLCVSSQVGC + C FC TG L RNL+A EIL QV Sbjct: 114 LWRLFDG-AQVESVLMRYPKRVTLCVSSQVGCGMGCPFCATGQLGLTRNLSAAEILEQVR 172 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGL 210 LA +D E + P+ ++SN+V MGMGEPL N+ ++ ++ A G Sbjct: 173 LAAR------AAQDGE-LGSPA---RLSNLVFMGMGEPLANYKSLLHTIRTLTAEVPQGF 222 Query: 211 SFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 S R + +ST G VP I ++ +E + V LA+SLHA ++LRN L+P+NR+Y ++ L+D Sbjct: 223 GISARNLVVSTVGLVPGIRKLTQEGLPVTLAVSLHAPDDELRNELIPMNRRYQVDELLDT 282 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIPAKINLIPFNPWPGCEY 326 Y + RR++ EY +++ +ND P A L L A +N IP NP PG + Sbjct: 283 AYAY-FQATGRRVSIEYALIRDMNDHPWRAQLLADKLNERGKTWAHVNPIPLNPTPGSIW 341 Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKV 375 S + + F E ++++G S+ +R RG DI ACGQL + +K+ P Sbjct: 342 DASLPRVMDEFMEILRQAGISTTLRDTRGSDIDGACGQLAAKAKQSPAA 390 >gi|23466064|ref|NP_696667.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium longum NCC2705] gi|81753640|sp|Q8G481|RLMN_BIFLO RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|23326790|gb|AAN25303.1| widely conserved hypothetical protein [Bifidobacterium longum NCC2705] Length = 389 Score = 186 bits (471), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 110/271 (40%), Positives = 159/271 (58%), Gaps = 16/271 (5%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 IE+V + +R TLC+SSQVGC + C FC TG L RN++ EI+ QV +A ++ D Sbjct: 126 IESVLMRYPTRTTLCISSQVGCGMDCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMRD-- 183 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLS 220 G V GR +SNIV MGMGEP+ N+++V ++ A G S R IT+S Sbjct: 184 ------GEVAGGEGR-LSNIVFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVS 236 Query: 221 TSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279 T G VP I ++ E I V LA+SLHA S++LR+ LVP+N+++ + ++DA Y L++ Sbjct: 237 TVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTKQVLDAAHDY-WLASK 295 Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVT 336 RR++ EY +++GIND A L K L A +N IP NP G ++ S +D Sbjct: 296 RRVSIEYALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQR 355 Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 F E + R+G ++ +R RG DI ACGQL + Sbjct: 356 FLEILHRAGITATLRDTRGQDIDGACGQLAA 386 >gi|213691945|ref|YP_002322531.1| radical SAM enzyme, Cfr family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523406|gb|ACJ52153.1| radical SAM enzyme, Cfr family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458052|dbj|BAJ68673.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 389 Score = 186 bits (471), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 110/271 (40%), Positives = 158/271 (58%), Gaps = 16/271 (5%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 IE+V + +R TLC+SSQVGC + C FC TG L RN++ EI+ QV +A ++ D Sbjct: 126 IESVLMRYPTRTTLCISSQVGCGMGCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMRD-- 183 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLS 220 G V GR +SNIV MGMGEP+ N+++V ++ A G S R IT+S Sbjct: 184 ------GEVAGGAGR-LSNIVFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVS 236 Query: 221 TSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279 T G VP I ++ E I V LA+SLHA S++LR+ LVP+N+++ ++DA Y L++ Sbjct: 237 TVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTTQVLDAAHDY-WLASK 295 Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVT 336 RR++ EY +++GIND A L K L A +N IP NP G ++ S +D Sbjct: 296 RRVSIEYALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQR 355 Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 F E + R+G ++ +R RG DI ACGQL + Sbjct: 356 FLEILHRAGITATLRDTRGQDIDGACGQLAA 386 >gi|322691316|ref|YP_004220886.1| hypothetical protein BLLJ_1127 [Bifidobacterium longum subsp. longum JCM 1217] gi|320456172|dbj|BAJ66794.1| conserved hypothetical protein [Bifidobacterium longum subsp. longum JCM 1217] Length = 389 Score = 186 bits (471), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 110/271 (40%), Positives = 159/271 (58%), Gaps = 16/271 (5%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 IE+V + +R TLC+SSQVGC + C FC TG L RN++ EI+ QV +A ++ D Sbjct: 126 IESVLMRYPTRTTLCISSQVGCGMDCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMRD-- 183 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLS 220 G V GR +SNIV MGMGEP+ N+++V ++ A G S R IT+S Sbjct: 184 ------GEVAGGEGR-LSNIVFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVS 236 Query: 221 TSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279 T G VP I ++ E I V LA+SLHA S++LR+ LVP+N+++ + ++DA Y L++ Sbjct: 237 TVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTKQVLDAAHDY-WLASK 295 Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVT 336 RR++ EY +++GIND A L K L A +N IP NP G ++ S +D Sbjct: 296 RRVSIEYALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQR 355 Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 F E + R+G ++ +R RG DI ACGQL + Sbjct: 356 FLEILHRAGITATLRDTRGQDIDGACGQLAA 386 >gi|317482872|ref|ZP_07941880.1| cfr family radical SAM enzyme [Bifidobacterium sp. 12_1_47BFAA] gi|291516841|emb|CBK70457.1| 23S rRNA m(2)A-2503 methyltransferase [Bifidobacterium longum subsp. longum F8] gi|316915717|gb|EFV37131.1| cfr family radical SAM enzyme [Bifidobacterium sp. 12_1_47BFAA] Length = 389 Score = 186 bits (471), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 110/271 (40%), Positives = 159/271 (58%), Gaps = 16/271 (5%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 IE+V + +R TLC+SSQVGC + C FC TG L RN++ EI+ QV +A ++ D Sbjct: 126 IESVLMRYPTRTTLCISSQVGCGMDCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMRD-- 183 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLS 220 G V GR +SNIV MGMGEP+ N+++V ++ A G S R IT+S Sbjct: 184 ------GEVAGGEGR-LSNIVFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVS 236 Query: 221 TSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279 T G VP I ++ E I V LA+SLHA S++LR+ LVP+N+++ + ++DA Y L++ Sbjct: 237 TVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTKQVLDAAHDY-WLASK 295 Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVT 336 RR++ EY +++GIND A L K L A +N IP NP G ++ S +D Sbjct: 296 RRVSIEYALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQR 355 Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 F E + R+G ++ +R RG DI ACGQL + Sbjct: 356 FLEILHRAGITATLRDTRGQDIDGACGQLAA 386 >gi|18405124|ref|NP_565909.1| radical SAM domain-containing protein [Arabidopsis thaliana] gi|15809964|gb|AAL06909.1| At2g39670/F17A14.4 [Arabidopsis thaliana] gi|17065474|gb|AAL32891.1| Unknown protein [Arabidopsis thaliana] gi|20197047|gb|AAB97122.2| expressed protein [Arabidopsis thaliana] gi|23197704|gb|AAN15379.1| Unknown protein [Arabidopsis thaliana] gi|330254610|gb|AEC09704.1| radical SAM domain-containing protein [Arabidopsis thaliana] Length = 428 Score = 186 bits (471), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 133/384 (34%), Positives = 196/384 (51%), Gaps = 41/384 (10%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQH 67 LIGM EL+E + +G R Q+ IY R + + S++ R L++ Sbjct: 64 LIGMSEPELQELAINLG----QEGYRGKQLHHLIYKRKVNKVEDFSNLPLTFRKGLVDGG 119 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP----EK--SRGTLCVSSQ 121 F + I + DGT K LL+ + IETV IP EK +R T CVSSQ Sbjct: 120 FKVGRSPIYQTVTATDGTIKLLLKLEDN-----LLIETVGIPVQDDEKGITRLTACVSSQ 174 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC L CSFC TG RNL EI+ QVL ED+ +++N Sbjct: 175 VGCPLRCSFCATGKGGFSRNLQRHEIIEQVL----------AIEDV-------FKHRVTN 217 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVML 239 +V MGMGEP+ N +V + + + +R IT+ST G VPN + ++ L Sbjct: 218 VVFMGMGEPMLNLKSVLDAHRCLNKD--IEIGQRMITISTVG-VPNTIKKLASHKLQSTL 274 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA + LR +VP + YPLE ++ CR Y +N RR++FEY +L G+ND A Sbjct: 275 AVSLHAPNQSLREKIVPSAKAYPLEAIMKDCRDYFQETN-RRVSFEYALLAGVNDQVEHA 333 Query: 300 LNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 + L ++L+ G +NLIP+NP G EY +K ++ F+ ++ ++ +R RGLD Sbjct: 334 VELAELLREWGKTYHVNLIPYNPIEGSEYQRPYKKAVLAFAAALESRKITASVRQTRGLD 393 Query: 358 ILAACGQLKSLSKRIPKVPRQEMQ 381 AACGQL++ ++ P + + Q Sbjct: 394 ASAACGQLRNKFQKSPLLTETDSQ 417 >gi|315657100|ref|ZP_07909984.1| cfr family radical SAM enzyme [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492203|gb|EFU81810.1| cfr family radical SAM enzyme [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 390 Score = 186 bits (471), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 120/349 (34%), Positives = 185/349 (53%), Gaps = 22/349 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ + + R D M+D+ R + + PE++ ++ + W + Sbjct: 58 FRADQVARHYFGRFEADPAQMTDLGPADR----ERARDLLPELITPVVTQVADKGWTRKT 113 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 R G ++E+V + R TLCVSSQVGC + C FC TG L RNL+A EIL QV Sbjct: 114 LWRLFDG-AQVESVLMRYPKRVTLCVSSQVGCGMGCPFCATGQLGLTRNLSAAEILEQVR 172 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGL 210 LA +D E + P+ ++SN+V MGMGEPL N+ ++ ++ A G Sbjct: 173 LAAR------AAQDGE-LGSPA---RLSNLVFMGMGEPLANYKSLLHTIRTLTAEVPQGF 222 Query: 211 SFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 S R + +ST G VP I ++ +E + V LA+SLHA ++LRN L+P+NR+Y ++ L+D Sbjct: 223 GISARNLVVSTVGLVPGIRKLTQEGLPVTLAVSLHAPDDELRNELIPMNRRYQVDELLDT 282 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIPAKINLIPFNPWPGCEY 326 Y + RR++ EY +++ +ND P A L L A +N IP NP PG + Sbjct: 283 AYAY-FQATGRRVSIEYALIRDMNDHPWRAQLLADKLNERGKTWAHVNPIPLNPTPGSIW 341 Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKV 375 S + + F E ++++G S+ +R RG DI ACGQL + +K+ P Sbjct: 342 DASLPRVMDEFMEILRQAGISTTLRDTRGSDIDGACGQLAAKAKQSPAA 390 >gi|297156855|gb|ADI06567.1| ribosomal RNA large subunit methyltransferase N [Streptomyces bingchenggensis BCW-1] Length = 368 Score = 185 bits (470), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 120/345 (34%), Positives = 179/345 (51%), Gaps = 25/345 (7%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI--VDEKISCDG--TRKW 88 R Q+ + + R D +DI R L + + P++ V ISCD TRK Sbjct: 42 FRAGQVSRHYFARYSHDPAQWTDIPAAAREKLA---AGLLPDLMSVVRHISCDDDTTRKT 98 Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 L R G + +E+V + R T+C+SSQ GC + C FC TG L RNL+ EI+ Sbjct: 99 LWRL----FDGTL-VESVLMRYPDRVTMCISSQAGCGMNCPFCATGQAGLDRNLSTAEIV 153 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 Q++ G + IP ++SNIV MGMGEPL N++ V ++ +D Sbjct: 154 HQIV---------DGMRALRDGEIPGGPARLSNIVFMGMGEPLANYNRVVGAIRRLTDPE 204 Query: 209 --GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEM 265 GL S+R IT+ST G VP + R +E LA+SLHA + LR+ LVP+N ++ + Sbjct: 205 PDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAVSLHAPDDGLRDTLVPVNTRWKVRE 264 Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE 325 ++DA Y ++ RR++ EY +++ IND A L ++LKG +NLIP NP PG + Sbjct: 265 VLDAAWEY-AETSGRRVSIEYALIRDINDQAWRADLLGRLLKGRRVHVNLIPLNPTPGSK 323 Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 + S +D F ++ G +R RG +I ACGQL + + Sbjct: 324 WTASRPEDEKAFVAALEAHGVPVTVRDTRGQEIDGACGQLAATER 368 >gi|255584867|ref|XP_002533149.1| catalytic, putative [Ricinus communis] gi|223527044|gb|EEF29230.1| catalytic, putative [Ricinus communis] Length = 420 Score = 185 bits (470), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 125/375 (33%), Positives = 189/375 (50%), Gaps = 40/375 (10%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH- 67 L+GM EL++ G R Q+ IY R +++ Q S + Q R+ L + Sbjct: 58 LLGMSEPELQQLAADFG----QQSYRGKQLHHLIYQRKVKEIQDFSQLPQAFRNELQEAG 113 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP---EKS--RGTLCVSSQV 122 + + I + DGT K L++ + IETV IP EK R T C+SSQV Sbjct: 114 WRVGRSPIYRTVTAADGTVKLLIKLEDNRL-----IETVGIPIQDEKGPVRLTACISSQV 168 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L CSFC TG RNL EI+ QVL + + +++N+ Sbjct: 169 GCPLRCSFCATGKGGYSRNLKRHEIVEQVLAIEEIFKN-----------------RVTNV 211 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLA 240 V MGMGEP+ N +V ++ + + +R IT+ST G VPN + ++ LA Sbjct: 212 VFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVG-VPNTIKKLASHKLQSTLA 268 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA + LR +VP + YPL+ ++ CR Y L +RR++FEY +L G+ND A Sbjct: 269 LSLHAPNQKLRETIVPSAKSYPLDAIMKDCRDY-FLETSRRVSFEYALLAGVNDRAEHAK 327 Query: 301 NLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 L ++L G + +NLIPFNP G +Y +K + F+ ++ + +R RG+D Sbjct: 328 ELAELLHEWGRGSHVNLIPFNPIEGSDYQRPSKKAVQAFAAALESRKITVSVRQTRGMDA 387 Query: 359 LAACGQLKSLSKRIP 373 AACGQL++ ++ P Sbjct: 388 SAACGQLRNEFQKSP 402 >gi|312132647|ref|YP_003999986.1| fe-s-cluster redox enzyme [Bifidobacterium longum subsp. longum BBMN68] gi|311773598|gb|ADQ03086.1| Hypothetical Fe-S-cluster redox enzyme [Bifidobacterium longum subsp. longum BBMN68] Length = 389 Score = 185 bits (470), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 110/271 (40%), Positives = 159/271 (58%), Gaps = 16/271 (5%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 IE+V + +R TLC+SSQVGC + C FC TG L RN++ EI+ QV +A ++ D Sbjct: 126 IESVLMRYPTRTTLCISSQVGCGMGCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMRD-- 183 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLS 220 G V GR +SNIV MGMGEP+ N+++V ++ A G S R IT+S Sbjct: 184 ------GEVAGGEGR-LSNIVFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVS 236 Query: 221 TSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279 T G VP I ++ E I V LA+SLHA S++LR+ LVP+N+++ + ++DA Y L++ Sbjct: 237 TVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTKQVLDAAHDY-WLASK 295 Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVT 336 RR++ EY +++GIND A L K L A +N IP NP G ++ S +D Sbjct: 296 RRVSIEYALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQR 355 Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 F E + R+G ++ +R RG DI ACGQL + Sbjct: 356 FLEILHRAGITATLRDTRGQDIDGACGQLAA 386 >gi|297823853|ref|XP_002879809.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297325648|gb|EFH56068.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp. lyrata] Length = 419 Score = 185 bits (470), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 136/385 (35%), Positives = 199/385 (51%), Gaps = 40/385 (10%) Query: 9 LIGMMREELEE-ALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR-HLLNQ 66 LIGM EL++ A+ + I Q R + Q+ IY R + + S++ Q R L+ Sbjct: 52 LIGMSEPELQQLAINLVLIFQEGYRGK--QLHHLIYKRKVNKVEDFSNLPQTFRKELVEG 109 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP----EK--SRGTLCVSS 120 F + I + DGT K LL+ + IETV IP EK +R T CVSS Sbjct: 110 GFKVGRSPIYQTVTATDGTIKLLLKLEDN-----LLIETVGIPVQDDEKGITRLTACVSS 164 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC L CSFC TG RNL EI+ QVL ED+ +++ Sbjct: 165 QVGCPLRCSFCATGKGGFSRNLQRHEIIEQVL----------AIEDV-------FKHRVT 207 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVM 238 N+V MGMGEP+ N +V + + + +R IT+ST G VPN + ++ Sbjct: 208 NVVFMGMGEPMLNLKSVLDAHRCLNKD--IEIGQRMITISTVG-VPNTIKKLASHKLQST 264 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLHA + LR +VP + YPLE ++ CR Y +N RR++FEY +L G+ND Sbjct: 265 LAVSLHAPNQSLREKIVPSAKAYPLEAIMKDCRDYFQETN-RRVSFEYALLAGVNDQVEH 323 Query: 299 ALNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 A+ L ++L+ G +NLIP+NP G EY +K ++ F+ ++ ++ +R RGL Sbjct: 324 AVELAELLREWGKTYHVNLIPYNPIEGSEYKRPYKKAVLAFASALESRKITASVRQTRGL 383 Query: 357 DILAACGQLKSLSKRIPKVPRQEMQ 381 D AACGQL++ ++ P V + Q Sbjct: 384 DASAACGQLRNKFQKSPLVTETDGQ 408 >gi|158313018|ref|YP_001505526.1| radical SAM protein [Frankia sp. EAN1pec] gi|205829763|sp|A8L6D8|RLMN_FRASN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|158108423|gb|ABW10620.1| radical SAM enzyme, Cfr family [Frankia sp. EAN1pec] Length = 385 Score = 185 bits (470), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 128/368 (34%), Positives = 191/368 (51%), Gaps = 26/368 (7%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIR--DFQGMSDISQEVRHLLNQ 66 L + R+E +G+P R Q+ + + +R D M+D+ +R L + Sbjct: 25 LADLSRDERRAVATSLGLPA----FRADQLARHYFTHHLRADDADLMTDLPASIRPALVE 80 Query: 67 HF--SIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 ++ P + CDG TRK + R + G +IE+V + R T+CVSSQ Sbjct: 81 AMLPRLLTPATA---LDCDGGQTRKTVWR----TVDG-AKIESVLMRYPQRATVCVSSQA 132 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RNL+ EI+ QV+ A + E ++SN+ Sbjct: 133 GCGMGCPFCATGQGGLTRNLSTAEIVEQVVDAARTMAARTTAEGGLPGGP----GRLSNV 188 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239 V MGMGEPL N+ + +L D GL S R +T+ST G VP I R+ GE + V L Sbjct: 189 VFMGMGEPLANYAALLAALHRLIDPAPDGLGLSARGLTVSTVGLVPAIRRLAGEGLPVTL 248 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA ++LR+ LVPIN ++P+ ++ A Y ++ RR++ EY ++ G+NDSP A Sbjct: 249 AVSLHAPDDELRDELVPINTRWPVAEVLAAAWEYARVTG-RRVSIEYALIDGVNDSPERA 307 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L +L G A +NLIP NP G + S + F E ++ G ++ +R RG +I Sbjct: 308 DALAALLVGQLAHVNLIPLNPTGGSSWQASAPRGQRVFVERLRARGVAATVRDTRGREIA 367 Query: 360 AACGQLKS 367 AACGQL + Sbjct: 368 AACGQLAA 375 >gi|325067056|ref|ZP_08125729.1| ribosomal RNA large subunit methyltransferase N [Actinomyces oris K20] Length = 370 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 126/349 (36%), Positives = 179/349 (51%), Gaps = 36/349 (10%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD--EKISCDGTRK--- 87 R Q+ + + RD M+D+ R Q + + PE++ + DG R Sbjct: 33 FRADQLSRHYFTHFTRDSADMTDLPAAQR---EQLCAELLPELITPVRALRADGGRTIKH 89 Query: 88 -WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEE 146 W L V +E+V + K R TLCVSSQ GC + C FC TG L RNL+ E Sbjct: 90 LWELH-------DGVRVESVLMRYKERTTLCVSSQAGCGMACPFCATGQMGLTRNLSTGE 142 Query: 147 ILLQVLLA--RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIA 204 I+ QV A S G+ G P+ ++SN+V MGMGEP+ N+ NV +L Sbjct: 143 IVEQVRHAAQASAAGELTGG--------PA---RLSNVVFMGMGEPMVNYKNVVGALHRL 191 Query: 205 SDSM--GLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKY 261 D G S R IT+ST G VP I R+ GE + V LA+SLHA ++LR+ L+P+N K+ Sbjct: 192 IDPAPEGFGLSARGITVSTVGLVPLIRRLAGEGLPVTLAVSLHAPDDELRDELIPVNSKW 251 Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPF 318 + L+DA Y L+ RR++ EY ++K +ND A L L A +N IP Sbjct: 252 KVGELLDAAHDY-FLATGRRVSIEYALIKDMNDHAWRAQLLADELNRRDTGWAHVNPIPL 310 Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 NP PG + CS+ F + ++R+G ++ +R RG DI ACGQL + Sbjct: 311 NPTPGSIWTCSEVAVQDMFVDTLRRAGITTTVRDTRGSDIDGACGQLAT 359 >gi|111225135|ref|YP_715929.1| ribosomal RNA large subunit methyltransferase N [Frankia alni ACN14a] gi|122953799|sp|Q0RDQ8|RLMN_FRAAA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|111152667|emb|CAJ64408.1| Fe-S-cluster redox enzyme [Frankia alni ACN14a] Length = 419 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 125/366 (34%), Positives = 189/366 (51%), Gaps = 27/366 (7%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIR--DFQGMSDISQEVRHLLNQ 66 L + R+E + + +G P R Q+ + + R + + M+D+ + R L + Sbjct: 35 LADLSRDERRQVAVALGQPA----FRADQVSRHYFARLVDADETDAMTDLPENARGPLLE 90 Query: 67 HFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + +SCD TRK R + +E+V + R T+CVSSQ GC Sbjct: 91 ALLPRL-LVPARTLSCDDGLTRKTAWRTADGAL-----LESVIMRYPDRATVCVSSQAGC 144 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EI+ QV+ A +L +++ G GR +SN+V Sbjct: 145 GMGCPFCATGQGGLTRNLSTAEIVEQVVHAARVLRR----QELAG----GQGR-LSNVVF 195 Query: 185 MGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAI 241 MGMGEPL N+ V +L IA GL S R +T+ST G VP + R+ GE + V LA+ Sbjct: 196 MGMGEPLANYTAVTAALRRLIAPSPEGLGLSARGLTVSTVGLVPAMRRLAGEGLPVTLAV 255 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++LR+ LVPIN ++P+ ++ A Y ++ RR++ EY ++ G+ND A Sbjct: 256 SLHAPDDELRDELVPINTRWPVAEVLAAAWEYAEVTG-RRVSIEYALIDGVNDDVARADA 314 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L +L G A +NLIP NP G + S F ++ G ++ +R RG +I AA Sbjct: 315 LATLLAGRLAHVNLIPLNPTEGSSWQASAPAGQRAFVRRLRERGIATTVRDTRGREIAAA 374 Query: 362 CGQLKS 367 CGQL + Sbjct: 375 CGQLAA 380 >gi|224367133|ref|YP_002601296.1| hypothetical protein HRM2_00090 [Desulfobacterium autotrophicum HRM2] gi|223689849|gb|ACN13132.1| conserved hypothetical protein [Desulfobacterium autotrophicum HRM2] Length = 342 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 111/297 (37%), Positives = 162/297 (54%), Gaps = 29/297 (9%) Query: 76 VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135 V +++ D T K++ R C IE+V IP K TLCVS+Q GC + C FC T Sbjct: 68 VVDQMEEDNTVKFVTRLHDGC-----SIESVIIPMKQYNTLCVSTQAGCRMGCRFCETAR 122 Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195 RNL EI Q+ AR+ LG +KISNIV MGMGEP NFD Sbjct: 123 SGFKRNLQVHEITGQLFSARNTLG-----------------KKISNIVFMGMGEPFDNFD 165 Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM---LAISLHAVSNDLRN 252 N+ +S+ + +D G + R +T+ST G VP I R +G+ LA+S+H+ +++R+ Sbjct: 166 NLVRSIRVFNDQKGFDVAFRHMTVSTCGLVPGI-RALAGLGLTQLSLAVSVHSAIDEVRS 224 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312 +L+P+NR+YPL +L A YP L R I EYV++KG+NDS A L++ L + + Sbjct: 225 VLMPVNRRYPLNVLRAALADYP-LHKRRYILVEYVLIKGVNDSQEAAAALVQYLVPLKVR 283 Query: 313 INLIPFNPW--PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 +NLI +NP P E+ D + F+ ++ SG R +G ++A CGQL + Sbjct: 284 VNLIAYNPGRDPDPEFQGVDDCSMNQFASWLEDSGLFVIKRWSKGQKLMAGCGQLST 340 >gi|326771755|ref|ZP_08231040.1| radical SAM enzyme, Cfr family [Actinomyces viscosus C505] gi|326637888|gb|EGE38789.1| radical SAM enzyme, Cfr family [Actinomyces viscosus C505] Length = 420 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 126/349 (36%), Positives = 179/349 (51%), Gaps = 36/349 (10%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD--EKISCDGTRK--- 87 R Q+ + + RD M+D+ R L + + PE++ + DG R Sbjct: 83 FRADQLSRHYFTHFTRDSADMTDLPAAQREQL---CAELLPELITPVRALRADGGRTIKH 139 Query: 88 -WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEE 146 W L V +E+V + K R TLCVSSQ GC + C FC TG L RNL+ E Sbjct: 140 LWELH-------DGVRVESVLMRYKERTTLCVSSQAGCGMACPFCATGQMGLTRNLSTGE 192 Query: 147 ILLQVLLA--RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS-- 202 I+ QV A S G+ G P+ ++SN+V MGMGEP+ N+ NV +L Sbjct: 193 IVEQVRHAAQASAAGELTGG--------PA---RLSNVVFMGMGEPMVNYKNVVGALHRL 241 Query: 203 IASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKY 261 I G S R IT+ST G VP I R+ GE + V LA+SLHA ++LR+ L+P+N K+ Sbjct: 242 IDPAPEGFGLSARGITVSTVGLVPLIRRLAGEGLPVTLAVSLHAPDDELRDELIPVNSKW 301 Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPF 318 + L+DA Y L+ RR++ EY ++K +ND A L L A +N IP Sbjct: 302 KVGELLDAAHDY-FLATGRRVSIEYALIKDMNDHAWRAQLLADELNRRDTGWAHVNPIPL 360 Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 NP PG + CS+ F + ++R+G ++ +R RG DI ACGQL + Sbjct: 361 NPTPGSIWTCSEVAVQDMFVDTLRRAGITTTVRDTRGSDIDGACGQLAT 409 >gi|289643660|ref|ZP_06475773.1| radical SAM enzyme, Cfr family [Frankia symbiont of Datisca glomerata] gi|289506551|gb|EFD27537.1| radical SAM enzyme, Cfr family [Frankia symbiont of Datisca glomerata] Length = 413 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 128/368 (34%), Positives = 188/368 (51%), Gaps = 31/368 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIR--DFQGMSDISQEVRHLLNQ 66 L + + E + +G P R Q+ + + R +R D + M+D+ R L + Sbjct: 46 LADLTTTQRRELTVSLGEPA----FRADQVARHYFARYLRAGDAEAMTDLPAASRAALLE 101 Query: 67 HFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 ++CD T K L R G V IE+V + R T+CVSSQ GC Sbjct: 102 ALLPAL-LTPARTMTCDAGATHKTLWR----AFDG-VLIESVLMRYPDRATVCVSSQAGC 155 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISNI 182 + C FC TG L RNL+A EI+ QV+ A + G+ G ++SN+ Sbjct: 156 GMGCPFCATGQGGLTRNLSAAEIVEQVVAAAGAIARGELAGGPA-----------RLSNV 204 Query: 183 VMMGMGEPLCNFDNVKKSLSI--ASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239 V MGMGEPL N+ V +L + A GL S R IT+ST G VP I R+ G + V L Sbjct: 205 VFMGMGEPLANYATVVAALRVLTAPPPAGLGLSARSITVSTVGLVPAIRRLAGAGLPVTL 264 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA ++LR+ LVP+NR++P+ ++ A Y + RR++ EY ++ +ND P A Sbjct: 265 AVSLHAPDDELRDSLVPVNRRWPVAEVLTAAWEY-AETTGRRVSIEYALIDDVNDQPERA 323 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L +L G A +NLIP NP G + S+++ F ++ G ++ +R RG DI Sbjct: 324 DALADLLVGRLAHVNLIPLNPTRGVSWQASERRREREFVRRLRLRGITATVRDTRGRDIA 383 Query: 360 AACGQLKS 367 AACGQL + Sbjct: 384 AACGQLAA 391 >gi|227543228|ref|ZP_03973277.1| possible Fe-S-cluster redox protein [Corynebacterium glucuronolyticum ATCC 51866] gi|227181037|gb|EEI62009.1| possible Fe-S-cluster redox protein [Corynebacterium glucuronolyticum ATCC 51866] Length = 398 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 128/381 (33%), Positives = 194/381 (50%), Gaps = 38/381 (9%) Query: 14 REELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYP 73 ++E E L ++G+P + R +QI + Y R D M+D+ + VR + + ++P Sbjct: 30 KDERIEILKELGLP----KFRDNQIARHYYGRFEADPGLMTDLPESVRTTVGEK---LFP 82 Query: 74 EI---VDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129 ++ V E + DG T+K L + + +E+V + R TLC+SSQ GC + C Sbjct: 83 QLMSPVRETSADDGKTQKMLWKLHDGTL-----LESVLMEYPDRATLCISSQAGCGMACP 137 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 FC TG L RNL+ EI+ QV A + + G ++SNIV MGMGE Sbjct: 138 FCATGQGGLDRNLSTGEIVDQVRAA--------------AATMQAKGGRLSNIVFMGMGE 183 Query: 190 PLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 PL N++ V ++ G S+R ITLST G P I R E + LA+SLH Sbjct: 184 PLANYNRVLSAIRQITQPSPEGFGISQRGITLSTVGLAPAIRRFAAEGLSCRLAVSLHTP 243 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++LR+ LVP N ++ + ++DA R Y S RR++ EY +++ IND P A L K L Sbjct: 244 DDELRDSLVPANNRWSIAEVLDAAREYAEAS-GRRVSIEYALIRDINDQPWRADLLGKKL 302 Query: 307 KGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 G +NLIP NP PG ++ S ++ F + + G + +R RG +I AACG Sbjct: 303 HGALGSKVHVNLIPLNPTPGSKWDASPKRVQDEFQKRVIARGVTCTVRDTRGQEIAAACG 362 Query: 364 QLKSLSKRIPKVPRQEMQITG 384 QL + +R R+ + T Sbjct: 363 QLAA-EERTGAAARRAKEATA 382 >gi|283456084|ref|YP_003360648.1| radical SAM family enzyme [Bifidobacterium dentium Bd1] gi|283102718|gb|ADB09824.1| Radical SAM family enzyme [Bifidobacterium dentium Bd1] Length = 389 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 126/358 (35%), Positives = 192/358 (53%), Gaps = 30/358 (8%) Query: 23 KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE---K 79 ++G+P R R Q+ Y D + SD R + F +P ++ E + Sbjct: 53 ELGLP----RFRVKQLANHYYGHFDVDAEEFSDFPANKRAEAAEAF---FPTLITEVTRQ 105 Query: 80 ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV 139 ++ +GT ++ R G + IE+V + +R TLC+SSQVGC + C FC TG L Sbjct: 106 VADEGT---TIKTLWRLFDGSL-IESVLMRYPTRTTLCISSQVGCGMGCPFCATGKLGLT 161 Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199 RN++A EI+ QV +A + D G V GR +SNIV MGMGEP+ N+ +V Sbjct: 162 RNMSAGEIVEQVRVAAKAMRD--------GEVAGGPGR-LSNIVFMGMGEPMGNYRSVLS 212 Query: 200 SLS--IASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVP 256 ++ A G S R IT+ST G VP I ++ E I V LA+SLHA S++LR+ LVP Sbjct: 213 AVRQISAMPPEGFVISARNITVSTVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVP 272 Query: 257 INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP---AKI 313 +N+++ ++DA Y L++ RR++ EY +++GIND A L K L A + Sbjct: 273 MNKRFDTTQVLDAAHDY-YLASKRRVSIEYALMRGINDQAEHARLLAKRLNHYGDNWAHV 331 Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 N IP NP G ++ S +D F + + ++G ++ +R RG DI ACGQL + ++ Sbjct: 332 NPIPLNPIEGSKWTASKPEDERRFLDILHQAGVTATLRDTRGQDIDGACGQLAAKERQ 389 >gi|256370982|ref|YP_003108806.1| radical SAM enzyme, Cfr family [Acidimicrobium ferrooxidans DSM 10331] gi|256007566|gb|ACU53133.1| radical SAM enzyme, Cfr family [Acidimicrobium ferrooxidans DSM 10331] Length = 353 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 116/353 (32%), Positives = 185/353 (52%), Gaps = 28/353 (7%) Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75 EL+ A ++ +P R+ Q++ +Y G R + +S + +R L H E Sbjct: 6 ELDRAAVRALVPWPDWRI--EQLFHGLYHEGQR-LEAISTLPARMRAELASHLDPGLTER 62 Query: 76 VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135 E T K+ L + +ETV + R ++CVSSQ GC++ C FC TG Sbjct: 63 RREHADDGETVKFALEAADGAL-----VETVVMQSARRISVCVSSQAGCAMGCRFCATGQ 117 Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195 VR+L EI+ Q+ +A+ V P R+++++V MGMGEPL N Sbjct: 118 AGFVRHLGVGEIVEQLAIAQR-------------SVRP---RRLTHVVFMGMGEPLANAS 161 Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNIL 254 +++ G+S RR+T+ST G VP I R+ ++GV LA+SLHA ++ R+ L Sbjct: 162 VAIEAIRRIRADFGIS--PRRVTVSTVGIVPGIRRLAHADLGVTLAVSLHAANDAARSDL 219 Query: 255 VPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKIN 314 VP+NR+Y ++ ++DA + + L+ RR+T E+ ++ G+ND RDA L + + A +N Sbjct: 220 VPMNRRYGIDAVLDAAQEFSELTG-RRVTLEWALIAGVNDRDRDATELAGHARRLAAHVN 278 Query: 315 LIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 LIP NP PG + +D + F+ ++ G + +R RG I AACGQL + Sbjct: 279 LIPLNPTPGYPMVGTDPDGVARFARRLRSLGVNVTVRDTRGRSIDAACGQLAA 331 >gi|23335166|ref|ZP_00120404.1| COG0820: Predicted Fe-S-cluster redox enzyme [Bifidobacterium longum DJO10A] gi|189439272|ref|YP_001954353.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium longum DJO10A] gi|322689304|ref|YP_004209038.1| hypothetical protein BLIF_1118 [Bifidobacterium longum subsp. infantis 157F] gi|189427707|gb|ACD97855.1| Hypothetical Fe-S-cluster redox enzyme [Bifidobacterium longum DJO10A] gi|320460640|dbj|BAJ71260.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis 157F] Length = 389 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 110/271 (40%), Positives = 158/271 (58%), Gaps = 16/271 (5%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 IE+V + +R TLC+SSQVGC + C FC TG L RN++ EI+ QV +A ++ D Sbjct: 126 IESVLMRYPTRTTLCISSQVGCGMGCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMRD-- 183 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLS 220 G V GR +SNIV MGMGEP+ N+++V ++ A G S R IT+S Sbjct: 184 ------GEVAGGEGR-LSNIVFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVS 236 Query: 221 TSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279 T G VP I ++ E I V LA+SLHA S++LR+ LVP+N+++ ++DA Y L++ Sbjct: 237 TVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTAQVLDAAHDY-WLASK 295 Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVT 336 RR++ EY +++GIND A L K L A +N IP NP G ++ S +D Sbjct: 296 RRVSIEYALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQR 355 Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 F E + R+G ++ +R RG DI ACGQL + Sbjct: 356 FLEILHRAGITATLRDTRGQDIDGACGQLAA 386 >gi|311898630|dbj|BAJ31038.1| hypothetical protein KSE_52620 [Kitasatospora setae KM-6054] Length = 366 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 120/359 (33%), Positives = 188/359 (52%), Gaps = 29/359 (8%) Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75 E +EA+ ++G R Q+ + R D + +DI R L + + PE+ Sbjct: 28 ERKEAVAELG----EQPFRAKQLSNHYFGRMSADPESWTDIPAASRTKLTE---ALLPEL 80 Query: 76 --VDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131 V +SCD TRK L + G + +E+V + R T+C+SSQ GC + C FC Sbjct: 81 MSVVRHVSCDDDATRKTLWKL----FDGTL-VESVLMRYPDRVTMCISSQAGCGMNCPFC 135 Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191 TG L RNL+ EI+ Q+ G D+ +P ++SN+V MGMGEPL Sbjct: 136 ATGQAGLTRNLSTAEIVEQIA---------SGMRDLRTGAVPGGEARLSNVVFMGMGEPL 186 Query: 192 CNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248 N++ V ++ +D G S+R IT+ST G VP + R +E + LA+SLHA + Sbjct: 187 ANYNRVLSAIRRLTDPSPDGFGLSQRGITVSTVGLVPAMHRFADEGLSCRLALSLHAPDD 246 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 +LR+ LVP+N ++ ++ ++DA +Y S RR++ EY ++K IND A L ++++ Sbjct: 247 ELRDELVPVNTRWKVDEVLDAAWNYAEKS-GRRVSIEYALIKDINDQAWRADLLGRLIRN 305 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 +NLIP NP PG ++ S +D F ++ G + +R RG +I ACGQL + Sbjct: 306 RRVHVNLIPLNPTPGSKWTASRPEDEREFVRRLQAHGVPTTVRDTRGQEIDGACGQLAA 364 >gi|194336581|ref|YP_002018375.1| radical SAM enzyme, Cfr family [Pelodictyon phaeoclathratiforme BU-1] gi|254807191|sp|B4SA62|RLMN_PELPB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|194309058|gb|ACF43758.1| radical SAM enzyme, Cfr family [Pelodictyon phaeoclathratiforme BU-1] Length = 359 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 132/382 (34%), Positives = 200/382 (52%), Gaps = 38/382 (9%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +++++ + EL++AL +G P R +QI +W++ F+ M+ +S +R L Sbjct: 4 QQQNITDLTLTELQQALSLLGEPA----FRATQIHQWLFSHHAASFEEMTILSLALRKKL 59 Query: 65 NQHFSII------YPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLC 117 ++ FSI + E +E C+ T K LL + +E+V I ++R T C Sbjct: 60 SESFSIHPLKRVEHQECFEE--DCESPTEKILLELQDKS-----RVESVLIATENRRTAC 112 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 VSSQ+GC L C FC TG RNLTA EI Q+ L+G G+ Sbjct: 113 VSSQIGCPLQCPFCATGQMGFRRNLTAGEITGQIYALNELVG------------AKEPGK 160 Query: 178 KISNIVMMGMGEPLCNFDNVKKSL-SIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-I 235 ++NIV MGMGEPL N NV +++ ++++ + S++RIT+ST G +P I R+G+ + Sbjct: 161 SLTNIVFMGMGEPLLNTGNVIEAIETLSTRNYRFCLSQKRITISTVGVIPEIQRLGKSGM 220 Query: 236 GVMLAISLHAVSNDLRNILVPI-NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 LA+SLHA R L+PI +R+YPL+ L A Y S +T Y++LKGIND Sbjct: 221 KTKLAVSLHAADQQKRESLMPIASRQYPLKELGTALSEYTQ-STGMPVTIVYLLLKGIND 279 Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEY--LCSDQKDIVTFSECIKRSGYSSPIRT 352 S DA L + K KINLI +N ++ + S +D+ F + + SG IR Sbjct: 280 SLDDAKMLARFSKTFLCKINLIDYNSIINIKFKPVYSATRDM--FQQYLINSGLHVTIRK 337 Query: 353 PRGLDILAACGQLKSLSKRIPK 374 G I AACGQL + S + P+ Sbjct: 338 SYGTTINAACGQLATASMQNPQ 359 >gi|256379897|ref|YP_003103557.1| ribosomal RNA large subunit methyltransferase N [Actinosynnema mirum DSM 43827] gi|255924200|gb|ACU39711.1| radical SAM enzyme, Cfr family [Actinosynnema mirum DSM 43827] Length = 368 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 124/371 (33%), Positives = 188/371 (50%), Gaps = 26/371 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH- 62 L L + E+ EA+ +G R +Q+ + R D M+DI R Sbjct: 15 LPPRHLADLTAEQRREAVASLG----EQPFRANQLSNHYFGRLTVDPDAMTDIPAAAREK 70 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L+ ++ E+ + TRK LLR + +E+V + R TLC+SSQ Sbjct: 71 LVGDLMPPLWTEVRSVEADAGTTRKTLLRAHDGTL-----VESVLMRYPDRATLCISSQA 125 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RNL+ EI+ QV + + D ++P ++SNI Sbjct: 126 GCGMACPFCATGQGGLQRNLSTAEIVDQVRRGAAAMRDG---------LLPGGPGRLSNI 176 Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239 V MGMGEPL N+ V +++ D GL S+R +T+ST G VP I ++ EE + V L Sbjct: 177 VFMGMGEPLANYKRVIEAVHRICDPAPAGLGISQRSVTVSTVGLVPAIRKLTEENLQVRL 236 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH ++LR+ LVP+N ++ + +++A R Y + RR++ EY +++ IND A Sbjct: 237 AVSLHTPDDELRDTLVPVNTRWKVAEVMEAARGYADRTG-RRVSIEYALIRDINDQGWRA 295 Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L K+L+ G +NLIP NP PG ++ S + F +K G +R RG Sbjct: 296 DMLGKLLRRHLGPLVHVNLIPLNPTPGSKWDASPKPVEREFVRRVKEQGVECTVRDTRGQ 355 Query: 357 DILAACGQLKS 367 +I AACGQL + Sbjct: 356 EIAAACGQLAA 366 >gi|193212778|ref|YP_001998731.1| ribosomal RNA large subunit methyltransferase N [Chlorobaculum parvum NCIB 8327] gi|193086255|gb|ACF11531.1| radical SAM enzyme, Cfr family [Chlorobaculum parvum NCIB 8327] Length = 374 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 126/367 (34%), Positives = 182/367 (49%), Gaps = 35/367 (9%) Query: 14 REELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYP 73 R+ELE + ++G P R Q+ +W+Y F+ M+ +++R L ++I P Sbjct: 25 RQELEHLMQRLGQPAYRAR----QLHQWLYSHQALSFEDMTSFGKKLREQLAGSWAI-RP 79 Query: 74 EIVD----EKISCDG-----TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +D E C T K+L++ + V IE+V IP + R T C+SSQVGC Sbjct: 80 ATLDATETEPAQCAAPGAIPTSKFLVK-----LDDGVLIESVLIPSEERMTACISSQVGC 134 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC TG R+L A EI QV L ++ GR I+N V Sbjct: 135 ALRCTFCATGQMGFKRDLVAPEITDQVFL-------------LQQEAHRLYGRGITNTVF 181 Query: 185 MGMGEPLCNFDNVKKSLS-IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 MGMGEPL N DNV +S+S + S S+R+IT+ST G VP I R+ + LAIS Sbjct: 182 MGMGEPLLNLDNVFESISTLTEQEYRFSISERKITISTVGLVPEIGRIATSGLKTKLAIS 241 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LH+ R ++P+ YPL+ L A Y + +T Y++L+GIND+P DA L Sbjct: 242 LHSADQATRERMMPVAADYPLDELSRAISAY-NTKTGQPVTLVYMLLEGINDAPEDARKL 300 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + K KINLI +N ++ F E + +G +R +G I AAC Sbjct: 301 ARFAKRGLCKINLIDYNAIVNLKFRPGYGSAKSMFIERLLDAGLHVTVRKSQGATINAAC 360 Query: 363 GQLKSLS 369 GQL + S Sbjct: 361 GQLATRS 367 >gi|302800564|ref|XP_002982039.1| hypothetical protein SELMODRAFT_179299 [Selaginella moellendorffii] gi|300150055|gb|EFJ16707.1| hypothetical protein SELMODRAFT_179299 [Selaginella moellendorffii] Length = 425 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 125/373 (33%), Positives = 199/373 (53%), Gaps = 38/373 (10%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQH 67 L+G +EL++ ++G R R Q++ +Y + Q +++S+ R L+++ Sbjct: 73 LLGKSEKELQDLCEEMG----EKRFRGKQMYLLLYKVRKAEIQEFTNLSKGFREKLISEG 128 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP---EKSRGTLCVSSQVGC 124 + + I + S DGT K LL+ + IETV IP E +R T+CVSSQVGC Sbjct: 129 WEVGRSPIHHKVNSVDGTIKVLLKLKDSRL-----IETVGIPADEENNRLTVCVSSQVGC 183 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 L C+FC TG R+L EI+ QVL+ + +++SN+V Sbjct: 184 PLRCAFCATGKGGFTRSLKPHEIIEQVLVMEEIF-----------------KQRVSNVVF 226 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAIS 242 MGMGEP+ N +V + ++ +G+ +R IT+ST G VPN R ++ LA+S Sbjct: 227 MGMGEPMLNMASVLAAHRCLNEDIGI--GQRMITISTVG-VPNSIRKLAAHKLQSTLAVS 283 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA + LR +VP + YPL+ L++ C+ Y ++ RR++FEY +L G+NDS A L Sbjct: 284 LHAPNQRLREQIVPSAKSYPLDALMEDCKEYFSIT-GRRVSFEYTLLAGVNDSKELAFEL 342 Query: 303 IKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 ++L + +NLIP+NP + QK + TF E + + ++ +R RGLD A Sbjct: 343 GELLHHWDMSHHVNLIPYNPVADSLFQRPWQKSVQTFVETLAKCRVNASVRQTRGLDANA 402 Query: 361 ACGQLKSLSKRIP 373 ACGQL++ ++ P Sbjct: 403 ACGQLRNQFQKTP 415 >gi|291456892|ref|ZP_06596282.1| radical SAM enzyme, Cfr family [Bifidobacterium breve DSM 20213] gi|291382169|gb|EFE89687.1| radical SAM enzyme, Cfr family [Bifidobacterium breve DSM 20213] Length = 389 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 110/271 (40%), Positives = 158/271 (58%), Gaps = 16/271 (5%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 IE+V + +R TLC+SSQVGC + C FC TG L RN++ EI+ QV +A ++ D Sbjct: 126 IESVLMRYPTRTTLCISSQVGCGMGCPFCATGKLGLTRNMSTGEIVEQVRVAAKMMRD-- 183 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLS 220 G V GR +SNIV MGMGEP+ N+++V ++ A G S R IT+S Sbjct: 184 ------GEVAGGEGR-LSNIVFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVS 236 Query: 221 TSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279 T G VP I ++ E I V LA+SLHA S++LR+ LVP+N+++ ++DA Y L++ Sbjct: 237 TVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTTQVLDAAHDY-WLASK 295 Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVT 336 RR++ EY +++GIND A L K L A +N IP NP G ++ S +D Sbjct: 296 RRVSIEYALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEKQ 355 Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 F E + R+G ++ +R RG DI ACGQL + Sbjct: 356 FLEILHRAGITATLRDTRGQDIDGACGQLAA 386 >gi|225352146|ref|ZP_03743169.1| hypothetical protein BIFPSEUDO_03761 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157393|gb|EEG70732.1| hypothetical protein BIFPSEUDO_03761 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 393 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 110/271 (40%), Positives = 158/271 (58%), Gaps = 16/271 (5%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 IE+V + +R TLC+SSQVGC + C FC TG L RN++A EIL QV +A + D Sbjct: 129 IESVLMRYPTRTTLCISSQVGCGMGCPFCATGQLGLTRNMSAGEILEQVRVAAKAMHD-- 186 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLS 220 G V +GR +SNIV MGMGEP+ N+ +V ++ A G S R IT+S Sbjct: 187 ------GEVAGGLGR-LSNIVFMGMGEPMGNYKSVLSAVRQISAMPPEGFGISARNITVS 239 Query: 221 TSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279 T G VP I ++ E I V LA+SLHA S++LR+ LVP+N+++ ++DA Y L++ Sbjct: 240 TVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTTQVLDAAHDYY-LASK 298 Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVT 336 RR++ EY +++GIND A L K L A +N IP NP G ++ S +D Sbjct: 299 RRVSIEYALMRGINDQAEHAKLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQQ 358 Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 F + + ++G ++ +R RG DI ACGQL + Sbjct: 359 FLDILHKAGITATLRDTRGQDIDGACGQLAA 389 >gi|325001872|ref|ZP_08122984.1| ribosomal RNA large subunit methyltransferase N [Pseudonocardia sp. P1] Length = 369 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 128/358 (35%), Positives = 189/358 (52%), Gaps = 39/358 (10%) Query: 23 KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD---EK 79 ++G+P + R Q+ + + R D + MSD+ + R Q + + P +V EK Sbjct: 34 ELGLP----KFRLDQLARHYFGRLTADVEEMSDLGADAR----QRLAALLPPLVTPLTEK 85 Query: 80 ISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKL 138 DG TRK L R + E+V + R T+C+SSQ GC + C FC TG L Sbjct: 86 ACDDGATRKTLWRGHDGVLA-----ESVLMRYPDRATVCISSQAGCGMACPFCATGQGGL 140 Query: 139 VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN-- 196 RNL+ EI+ QV A + D G D ++SN+V MGMGEPL N+ Sbjct: 141 QRNLSTGEIVDQVRRAAAAARD--GALDEPA--------RLSNVVFMGMGEPLANYKRVV 190 Query: 197 --VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNI 253 V++ S A D G+ S R +T+ST G VP I R+ EE + V LAISLH ++LR+ Sbjct: 191 AAVRRITSPAPDGFGI--SARGVTVSTVGLVPAIDRLREEGVPVTLAISLHCPDDELRDT 248 Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIP 310 LVP+N ++ + ++DA R Y + RR++ EY +++ +ND P A L K+L+ G Sbjct: 249 LVPVNNRWKVSEVLDAGRRY-ATTTGRRVSIEYALIRDVNDQPWRADMLGKVLRQHIGTS 307 Query: 311 -AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 +NLIP NP PG E+ S + F ++ +G + +R RG +I AACGQL + Sbjct: 308 RVHVNLIPLNPTPGSEWDASPKPVEEEFVRRVRATGVACTVRDTRGQEIDAACGQLAA 365 >gi|297562607|ref|YP_003681581.1| radical SAM enzyme, Cfr family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847055|gb|ADH69075.1| radical SAM enzyme, Cfr family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 365 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 127/342 (37%), Positives = 185/342 (54%), Gaps = 25/342 (7%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEIVDEKISCDG--TRKW 88 R Q+ + + + D M+D+ R L + +++ P I+CD TRK Sbjct: 39 FRAKQLAQHYFGSLVSDTSAMTDLPASSRERLGEALLPTLLTPV---RHITCDNGMTRKT 95 Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 L + G V E+V + R TLC+SSQ GC + C FC TG L RNL+ EI+ Sbjct: 96 LWK----AFDG-VLFESVLMRYPDRVTLCISSQAGCGMNCPFCATGQAGLTRNLSTGEII 150 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 QV+ + L + G V GR ISNIV MGMGEP+ N+ V +S+ +D + Sbjct: 151 DQVVASARDLAN--------GEVAGGPGR-ISNIVFMGMGEPMANYKRVLQSVRRITDPV 201 Query: 209 --GLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEM 265 GL S+R +T+ST G VP I + + E + V LAISLHA ++LR+ LVPIN ++ ++ Sbjct: 202 PNGLGISQRGVTVSTVGLVPAINKLIDERMQVRLAISLHAPDDELRDELVPINTRWKVDE 261 Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE 325 ++DA Y G + RR++ EY ++K IND A L K+LKG +NLIP NP PG + Sbjct: 262 VLDAAWRYAG-TTGRRVSIEYALIKDINDQAWRADLLGKLLKGHLVHVNLIPLNPTPGSK 320 Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 + S +D F ++ G + +R RG +I ACGQL + Sbjct: 321 WTASRPEDEREFVRRLESHGVAVTVRDTRGQEIDGACGQLAA 362 >gi|302525208|ref|ZP_07277550.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp. AA4] gi|302434103|gb|EFL05919.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp. AA4] Length = 368 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 126/376 (33%), Positives = 191/376 (50%), Gaps = 36/376 (9%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 L L + E EA++++G R Q+ + R D M+DI R Sbjct: 15 LPPRHLADLTVAERAEAVVELG----EKAFRAKQLSNHYFSRLTVDPAEMTDIPAASREK 70 Query: 64 LNQHFSIIYPEIVDE--KISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119 L + + P ++ E ++ DG TRK L R + +E+V + R TLC+S Sbjct: 71 L---VADLMPPLLTEVRALAADGGATRKTLWRAHDGTL-----LESVLMRYPDRATLCIS 122 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGR 177 SQ GC + C FC TG L RNL+ EI+ QV A +++ G PG Sbjct: 123 SQAGCGMACPFCATGQGGLDRNLSTAEIVDQVRDAAAVMRDGSMPGGPG----------- 171 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE- 234 ++SNIV MGMGEPL N+ V ++ +D GL +R +T+ST G P I ++ +E Sbjct: 172 RLSNIVFMGMGEPLANYKRVVAAVRRITDPSPAGLGIGQRSVTVSTVGLAPAIRKLADEK 231 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 + V LA+SLH ++LR+ LVP+N ++ ++ ++ A R+Y S RR++ EY +++ IND Sbjct: 232 MQVRLAVSLHTPDDELRDTLVPVNNRWSVDEVLSAARYYADTSG-RRVSIEYALIRDIND 290 Query: 295 SPRDALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351 P A L K L+ G +N+IP NP PG ++ S + F + G + +R Sbjct: 291 QPWRAELLAKRLRKHLGQLVHVNVIPLNPTPGSKWDASPKPVEREFVRLVNAGGVACTVR 350 Query: 352 TPRGLDILAACGQLKS 367 RG DI AACGQL + Sbjct: 351 DTRGQDIAAACGQLAA 366 >gi|319948052|ref|ZP_08022226.1| ribosomal RNA large subunit methyltransferase N [Dietzia cinnamea P4] gi|319438291|gb|EFV93237.1| ribosomal RNA large subunit methyltransferase N [Dietzia cinnamea P4] Length = 369 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 124/358 (34%), Positives = 189/358 (52%), Gaps = 32/358 (8%) Query: 20 ALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE- 78 A+ +G+P R Q+ + R D + M+D+ ++R + Q ++P + Sbjct: 32 AMGDLGVPS----FRGKQLANQYFGRLEADPREMTDLPADLRDRVGQE---LFPPLTTSL 84 Query: 79 -KISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135 +S D TRK L + + +E+V + R T+C+SSQ GC + C FC TG Sbjct: 85 RHVSADEGTTRKTLWKLHDGSL-----VESVLMRYPDRATVCISSQAGCGMACPFCATGQ 139 Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195 L RNL+ EIL QV +A L D IP ++SN+V MGMGEPL N+ Sbjct: 140 GGLQRNLSTAEILEQVRVAARALRDG---------EIPGGPGRLSNVVFMGMGEPLANYK 190 Query: 196 NVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252 V ++ I+ G S+R +T+ST G VP I ++ EE + V LA+SLH ++LR+ Sbjct: 191 RVLAAVRGIISPPPSGFGLSQRSVTVSTVGVVPAIHKLAEEGLQVTLAVSLHTPDDELRD 250 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GI 309 LVP+N ++P+ ++DA RHY + RR++ EY +++ +ND L ++L G Sbjct: 251 TLVPVNNRWPVTEVMDAARHY-ADATGRRVSIEYALIRDVNDQVWRGEMLGRLLAQRLGP 309 Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 A +NLIP NP PG E+ S + F ++ +G S +R RG DI AACGQL + Sbjct: 310 MAHVNLIPLNPTPGSEWDASPRHQQDAFVAAVRAAGVSCTVRDTRGSDIDAACGQLAA 367 >gi|294790917|ref|ZP_06756075.1| radical SAM enzyme, Cfr family [Scardovia inopinata F0304] gi|294458814|gb|EFG27167.1| radical SAM enzyme, Cfr family [Scardovia inopinata F0304] Length = 424 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 129/368 (35%), Positives = 193/368 (52%), Gaps = 37/368 (10%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--S 69 M +EE A+ K+G P R Q+ + + R+ SD Q+ ++ F S Sbjct: 59 MDQEERAAAMAKLGYPS----FRVKQLGQHYFAHYNREVSSYSDFPQQQAQVVENTFFPS 114 Query: 70 IIYPEIVDEKISCDGTRK--WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 +I P + +++ T K W L +R IE+V + +R TLC+SSQVGC + Sbjct: 115 LIRP-LAEQEADQGTTVKTLWGLFDGSR-------IESVLMKYPTRTTLCISSQVGCGMG 166 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC TG L RN++A EIL QV A D + PS ++SN+V MGM Sbjct: 167 CPFCATGKLGLTRNMSAGEILEQVRYAARQARD-------GRLGQPS---RLSNVVFMGM 216 Query: 188 GEPLCNFDNVKKSL----SIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAIS 242 GE L N+ + K++ ++ D G+ S R IT+ST G VP I R+ E I V LA+S Sbjct: 217 GEALGNYKAMMKAIRQISALPPDGFGI--SARNITVSTVGIVPGIRRLMTEGIPVRLAVS 274 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA S+ LR+ LVP+N+++ + ++DA Y ++ RR++ EY ++KGIND + A L Sbjct: 275 LHAPSDSLRDELVPMNKRFAISQVLDAAHDY-YVATKRRVSIEYALMKGINDQAQHARLL 333 Query: 303 IKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 K L +N IP NP G + S +D F + + ++G ++ +R RG DI Sbjct: 334 AKRLNHYGDDWVHVNPIPLNPIEGSRWTASKPEDEKRFLDILHQAGIAATLRDTRGSDID 393 Query: 360 AACGQLKS 367 ACGQL + Sbjct: 394 GACGQLAA 401 >gi|258652388|ref|YP_003201544.1| ribosomal RNA large subunit methyltransferase N [Nakamurella multipartita DSM 44233] gi|258555613|gb|ACV78555.1| radical SAM enzyme, Cfr family [Nakamurella multipartita DSM 44233] Length = 372 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 123/345 (35%), Positives = 180/345 (52%), Gaps = 29/345 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE--KISCD--GTRKW 88 R Q+ + RD M+D+ R + + PE++ E ++CD TRK Sbjct: 41 FRAKQLAHHYFAGLTRDAAEMTDLPAAGR---AEFVDALLPELLTEVRSLACDDGSTRKT 97 Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 L R + IE+V + R TLCVSSQ GC + C FC TG L RNL+ EI+ Sbjct: 98 LWRAHDGTL-----IESVLMRYPDRITLCVSSQAGCGMACPFCATGQGGLQRNLSTGEIV 152 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASD 206 QV LA + D G G ++SN+V MGMGEPL N++ V +++ A Sbjct: 153 EQVRLAARMARD--GALGEPG--------RLSNVVFMGMGEPLANYNRVLEAVRAITAPA 202 Query: 207 SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEM 265 GL S R +T+ST G VP I R+ EE + V LA+SLH ++LR+ LVP+N ++ + Sbjct: 203 PSGLGISARSVTVSTVGLVPAIRRLTEEKLQVRLAVSLHTPDDELRDTLVPVNERWKVAE 262 Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIPAKINLIPFNPWP 322 ++ A R Y + RR++ EY +++ IND P A L +L+ G +NLIP NP P Sbjct: 263 VLAAAREYAD-TTGRRVSIEYALIRDINDQPWRADLLGSLLREHLGPLVHVNLIPLNPTP 321 Query: 323 GCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 G ++ S + F ++ G + +R RG +I AACGQL + Sbjct: 322 GSQWDASPRPVQDEFVRRVRAQGVACTVRDTRGQEIAAACGQLAA 366 >gi|296454242|ref|YP_003661385.1| Cfr family radical SAM enzyme [Bifidobacterium longum subsp. longum JDM301] gi|296183673|gb|ADH00555.1| radical SAM enzyme, Cfr family [Bifidobacterium longum subsp. longum JDM301] Length = 389 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 110/271 (40%), Positives = 157/271 (57%), Gaps = 16/271 (5%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 IE+V + +R TLC+SSQVGC + C FC TG L RN++ EI+ QV +A ++ D Sbjct: 126 IESVLMRYPTRTTLCISSQVGCGMGCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMRD-- 183 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLS 220 G V GR +SNIV MGMGEP+ N+++V ++ A G S R IT+S Sbjct: 184 ------GEVAGGEGR-LSNIVFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVS 236 Query: 221 TSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279 T G VP I ++ E I V LA+SLHA S++LR+ LVP+N+++ ++DA Y L++ Sbjct: 237 TVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKRFNTTQVLDAAHDY-WLASK 295 Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVT 336 RR++ EY +++GIND A L K L A +N IP NP G ++ S D Sbjct: 296 RRVSIEYALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPGDEQR 355 Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 F E + R+G ++ +R RG DI ACGQL + Sbjct: 356 FLEILHRAGITATLRDTRGQDIDGACGQLAA 386 >gi|225388237|ref|ZP_03757961.1| hypothetical protein CLOSTASPAR_01972 [Clostridium asparagiforme DSM 15981] gi|225045705|gb|EEG55951.1| hypothetical protein CLOSTASPAR_01972 [Clostridium asparagiforme DSM 15981] Length = 304 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 102/273 (37%), Positives = 149/273 (54%), Gaps = 23/273 (8%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 IETV+I + GT+CVS+QVGC + C FC +G VRNLT+ EI+ Q++L R Sbjct: 53 IETVFIKRRDGGTVCVSTQVGCPVGCIFCESGRNGFVRNLTSSEIVQQIILLR------- 105 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 RK++ IV MGMGEPL N+DN+ K++ I D GL+F IT+ST Sbjct: 106 --------------RKVNRIVFMGMGEPLFNYDNLIKAIHILRDRYGLNFPTDGITISTV 151 Query: 223 GFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281 G V + ++ EE + + L ISLHA + RN ++P R Y +E ++ Y N R+ Sbjct: 152 GPVDQLKKLREEHLKIQLTISLHAATQSARNRIIPHMRIYAIEDVVKQALSYSERHN-RK 210 Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341 I F Y++L GIND P D L K +G IN++ +NP +++IV F + Sbjct: 211 IVFAYLLLPGINDRPSDVRQLAKWFRGKKVMINVLQYNPTSNSRIKAPQKREIVAFKHQL 270 Query: 342 KRSGYSSPIRTPRGLDILAACGQLKSLSKRIPK 374 +++G +R G +I AACGQL + + K Sbjct: 271 EQAGLEVTMRVSHGREINAACGQLANTYNKFKK 303 >gi|117928743|ref|YP_873294.1| radical SAM protein [Acidothermus cellulolyticus 11B] gi|205829702|sp|A0LV48|RLMN_ACIC1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|117649206|gb|ABK53308.1| 23S rRNA m(2)A-2503 methyltransferase [Acidothermus cellulolyticus 11B] Length = 430 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 110/295 (37%), Positives = 161/295 (54%), Gaps = 33/295 (11%) Query: 89 LLRFPAR-----CIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLT 143 L+R+P R +G E + R TLCVSSQ GC + C FC TG LVRNL+ Sbjct: 128 LMRYPPRHSRHAALG--AEADADGGSRHGRVTLCVSSQAGCGMGCPFCATGQAGLVRNLS 185 Query: 144 AEEILLQV-----LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVK 198 A EI+ QV +AR + PG ++SN+V MGMGEPL N+ +V Sbjct: 186 AAEIVAQVAVAARTVARGEMAGGPG--------------RLSNVVFMGMGEPLANYRSVV 231 Query: 199 KSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILV 255 ++ ++ GL S+R +T+ST G VP I R+ E + V LA+SLHA ++LRN+LV Sbjct: 232 DAVRRITEPPPEGLGISQRSVTVSTVGLVPAIERLATEGLAVTLAVSLHAPDDELRNVLV 291 Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP--RDALNL-IKILKGIPAK 312 PINR++P+ ++ A Y ++ RR++ EY +++ +ND P DAL +K G Sbjct: 292 PINRRWPVRDVLGAAARYAEVTK-RRVSVEYALIRDVNDQPWRADALAAQVKEFLGRLGH 350 Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 +NLIP NP PG + S + F + +G + +R RG ++ ACGQL + Sbjct: 351 VNLIPLNPTPGSPWTASTPRAQAEFVRRLAAAGVTVTVRDTRGREVNGACGQLAA 405 >gi|237785746|ref|YP_002906451.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium kroppenstedtii DSM 44385] gi|237758658|gb|ACR17908.1| conserved hypothetical protein [Corynebacterium kroppenstedtii DSM 44385] Length = 394 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 121/366 (33%), Positives = 189/366 (51%), Gaps = 32/366 (8%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 +E ++A+ +G+P R +Q+ + Y R + M+D+ R + + ++PE Sbjct: 49 DEQKQAVKDLGLPA----FRANQLARHYYGRFEASPETMTDLPAAAREPVQK---ALFPE 101 Query: 75 IVDE--KISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130 ++ E ISCD TRK L + + +E+V + R TLC+SSQ GC + C F Sbjct: 102 LMTEVRNISCDQGMTRKTLWKLHDGTL-----LESVLMRYPGRATLCISSQAGCGMACPF 156 Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 C TG L RNL+ EI+ QV A + + G V GR +SN+V MGMGEP Sbjct: 157 CATGQGGLHRNLSTGEIVDQVRAAAAAMS--------RGDVAGGKGR-LSNVVFMGMGEP 207 Query: 191 LCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVS 247 L N+ V ++ +D G S+R +T+S+ G P I R +E + V LA+SLH Sbjct: 208 LANYKRVVSAVRQITDPSPRGFGLSQRNVTVSSVGLAPAIRRFADEGLSVTLAVSLHTPD 267 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA---LNLIK 304 ++LR+ LVP+N ++ +E ++DA +Y S RR++ EY +++ +ND A +K Sbjct: 268 DELRDSLVPVNNRWSVEEVLDAAAYYADRS-GRRVSIEYALIRDVNDQGWRADLLGKKLK 326 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +N+IP NP PG + S ++ F +K G +R RG +I AACGQ Sbjct: 327 KALHSKVHVNVIPLNPTPGSIWDASTKQQQEEFVRRVKTQGVECTVRDTRGQEIAAACGQ 386 Query: 365 LKSLSK 370 L + K Sbjct: 387 LAAEEK 392 >gi|296129336|ref|YP_003636586.1| radical SAM enzyme, Cfr family [Cellulomonas flavigena DSM 20109] gi|296021151|gb|ADG74387.1| radical SAM enzyme, Cfr family [Cellulomonas flavigena DSM 20109] Length = 375 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 118/343 (34%), Positives = 178/343 (51%), Gaps = 24/343 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ + D M+D+ + R L + ++PE++ + ++ Sbjct: 45 FRAKQLATHYFTHLTSDADAMTDLPKASRDTL---VADLFPELLTTSRTLTADHGTTVKT 101 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G ++E+V + +R TLCVSSQ GC L CSFC TG L+RNL+ EI+ QV Sbjct: 102 LYHLFDG-AKVESVLMRYANRTTLCVSSQAGCGLACSFCATGKMGLLRNLSTAEIVEQVR 160 Query: 153 LARSLL--GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSM 208 A L GD PG P+ ++SN+V MGMGEPL N+ V ++ +A Sbjct: 161 QAARALADGDVPGG--------PT---RLSNVVFMGMGEPLANYKAVMATVRRLVAPAPD 209 Query: 209 GLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267 GL S R +T+ST G VP + R+ GE I V LA+SLHA ++LR+ LVP+N ++ ++ + Sbjct: 210 GLGMSARNVTVSTVGLVPAMDRLAGEGIPVTLALSLHAPDDELRSELVPVNTRWSVDEAL 269 Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSP--RDALNLIKILKGIP-AKINLIPFNPWPGC 324 D+ R Y ++ RR++ EY +++ +ND D L + +G N IP NP PG Sbjct: 270 DSARRYFDVTG-RRVSIEYALIRDVNDHAWRADLLGEKLVARGTGWVHCNPIPLNPTPGS 328 Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 + SD + F ++ G + IR RG DI ACGQL + Sbjct: 329 RWTASDPQVEAEFVARLRAHGVPTTIRDTRGSDIDGACGQLAA 371 >gi|224098427|ref|XP_002311170.1| predicted protein [Populus trichocarpa] gi|222850990|gb|EEE88537.1| predicted protein [Populus trichocarpa] Length = 441 Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 130/385 (33%), Positives = 193/385 (50%), Gaps = 33/385 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH- 67 L+GM EL++ +G R Q+ IY R +++ Q S + R+ L + Sbjct: 55 LLGMSEPELQQLATDLG----QQSYRGKQLHHLIYQRKVKEIQDFSQLPLVFRNDLQEAG 110 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRG----TLCVSSQV 122 + + I + DGT K L+R + IETV IP E +G T CVSSQV Sbjct: 111 WKVGRSPIFQTVTAADGTVKLLIRLEDNRL-----IETVGIPVEDEKGSMRLTACVSSQV 165 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS-------- 174 GC L CSFC TG RNL EI+ Q L S G C + V+ + Sbjct: 166 GCPLRCSFCATGKGGFSRNLQRHEIVEQHRLGSS--GTTSTCSKLYLHVLYAQVLAVEEI 223 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VG 232 +++N+V MGMGEP+ N +V ++ + + +R IT+ST G VPN + Sbjct: 224 FKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVG-VPNTIKKLAS 280 Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 ++ LA+SLHA + LR +VP + YPL+ ++ C+ Y L +RR++FEY +L G+ Sbjct: 281 HKLQSTLALSLHAPNQKLRETIVPSAKSYPLDAIMKDCKEY-FLETSRRVSFEYALLAGV 339 Query: 293 NDSPRDALNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI 350 ND A L ++L G +NLIPFNP G +Y +K I F+ ++ + + Sbjct: 340 NDRVEHAKELAELLHQWGRGHHVNLIPFNPIQGSDYKRPHKKAIQAFAAVLESRKVTVSV 399 Query: 351 RTPRGLDILAACGQLKSLSKRIPKV 375 R RGLD AACGQL++ ++ P V Sbjct: 400 RQTRGLDASAACGQLRNEFQKSPLV 424 >gi|330685493|gb|EGG97146.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis VCU121] Length = 278 Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 103/293 (35%), Positives = 162/293 (55%), Gaps = 21/293 (7%) Query: 26 IPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGT 85 I + R QI++W+Y + + M+++S+++R LL +F++ V ++ S DGT Sbjct: 6 IEHGQQKFRAKQIFEWLYQKRVDSIDEMTNLSKDLRQLLKDNFAMTTLTTVVKQESRDGT 65 Query: 86 RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAE 145 K+L IETV + + ++CV++QVGC + C+FC + L RNL A Sbjct: 66 IKFLFELQ-----DGYTIETVLMRHEYGNSVCVTTQVGCRIGCTFCASTLGGLKRNLEAG 120 Query: 146 EILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS 205 EI+ QVL + L + ++S IV+MG+GEP N+D + L I + Sbjct: 121 EIVSQVLTVQKALDE--------------TEERVSQIVIMGIGEPFENYDEMMDFLRIVN 166 Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLE 264 D L+ R IT+STSG +P I EE I + A+SLH +++R+ L+PINR Y +E Sbjct: 167 DDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVSLHGAKDEVRSRLMPINRAYNVE 226 Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIP 317 L++A +Y +N RRITFEY + G+ND A +L ++KG+ +NLIP Sbjct: 227 KLMEAIEYYQEKTN-RRITFEYGLFGGVNDQLEHARDLAHLIKGLNCHVNLIP 278 >gi|296268984|ref|YP_003651616.1| radical SAM enzyme, Cfr family [Thermobispora bispora DSM 43833] gi|296091771|gb|ADG87723.1| radical SAM enzyme, Cfr family [Thermobispora bispora DSM 43833] Length = 388 Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 125/347 (36%), Positives = 188/347 (54%), Gaps = 29/347 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD--EKISCDG--TRKW 88 R Q+ + + R + M+D+ R L S + P ++ +++CDG TRK Sbjct: 54 FRADQLSRHYFGRLTASPEQMTDLPGGSRDRL---VSALLPPLLTPVRELACDGGTTRKT 110 Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 L R G + +E+V + R T+CVSSQ GC + C FC TG L RNL+ EI+ Sbjct: 111 LWRL----FDGAL-VESVLMRYPDRTTICVSSQAGCGMNCPFCATGQAGLTRNLSTAEIV 165 Query: 149 LQVLL-ARSLL-GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD 206 QV+ ARSL G+ PG +ISN+V MGMGEP+ N+ V ++ + Sbjct: 166 EQVVAGARSLAKGEVPGGPG-----------RISNVVFMGMGEPMANYKAVVAAIRRLTS 214 Query: 207 SM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPL 263 + GL S R IT+ST G VP I R+ +E + V LA+SLHA ++LR+ LVPIN ++ + Sbjct: 215 PVPEGLGISARGITVSTVGLVPAIERLAQEGLPVTLAVSLHAPDDELRDTLVPINTRWKV 274 Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPG 323 ++DA +Y ++ RR++ EY +++ IND A L ++L+G A +NLIP NP PG Sbjct: 275 AEVLDAAWNYAAVTK-RRVSIEYALIRDINDQEWRADLLGRLLQGRLAHVNLIPLNPTPG 333 Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 + S +D F ++ G +R RG +I ACGQL + + Sbjct: 334 SPWTASRPRDERAFVRRLESYGIPVTVRDTRGREIDGACGQLAARDR 380 >gi|254976991|ref|ZP_05273463.1| hypothetical protein CdifQC_16843 [Clostridium difficile QCD-66c26] gi|255651909|ref|ZP_05398811.1| hypothetical protein CdifQCD_17123 [Clostridium difficile QCD-37x79] gi|260687131|ref|YP_003218265.1| hypothetical protein CDR20291_1774 [Clostridium difficile R20291] gi|293402444|ref|ZP_06646580.1| radical SAM enzyme, Cfr family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|296450747|ref|ZP_06892500.1| cfr family radical SAM enzyme [Clostridium difficile NAP08] gi|306521660|ref|ZP_07408007.1| hypothetical protein CdifQ_19485 [Clostridium difficile QCD-32g58] gi|323485992|ref|ZP_08091323.1| cfr family radical SAM enzyme [Clostridium symbiosum WAL-14163] gi|323692843|ref|ZP_08107070.1| cfr family Radical SAM enzyme [Clostridium symbiosum WAL-14673] gi|332652412|ref|ZP_08418157.1| radical SAM enzyme, Cfr family [Ruminococcaceae bacterium D16] gi|164512331|emb|CAO78566.2| hypothetical protein [Clostridium difficile] gi|260213148|emb|CBE04584.1| putative uncharacterized protein [Clostridium difficile R20291] gi|291304107|gb|EFE45360.1| radical SAM enzyme, Cfr family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291541455|emb|CBL14565.1| 23S rRNA m(2)A-2503 methyltransferase [Ruminococcus bromii L2-63] gi|296260591|gb|EFH07433.1| cfr family radical SAM enzyme [Clostridium difficile NAP08] gi|323400559|gb|EGA92926.1| cfr family radical SAM enzyme [Clostridium symbiosum WAL-14163] gi|323503157|gb|EGB18992.1| cfr family Radical SAM enzyme [Clostridium symbiosum WAL-14673] gi|332517558|gb|EGJ47161.1| radical SAM enzyme, Cfr family [Ruminococcaceae bacterium D16] Length = 327 Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 102/273 (37%), Positives = 149/273 (54%), Gaps = 23/273 (8%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 IETV+I + GT+CVS+QVGC + C FC +G VRNLT+ EI+ Q++L R Sbjct: 76 IETVFIKRRDGGTVCVSTQVGCPVGCIFCESGRNGFVRNLTSSEIVQQIILLR------- 128 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 RK++ IV MGMGEPL N+DN+ K++ I D GL+F IT+ST Sbjct: 129 --------------RKVNRIVFMGMGEPLFNYDNLIKAIHILRDRYGLNFPTDGITISTV 174 Query: 223 GFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281 G V + ++ EE + + L ISLHA + RN ++P R Y +E ++ Y N R+ Sbjct: 175 GPVDQLKKLREEHLKIQLTISLHAATQSARNRIIPHMRIYAIEDVVKQALSYSERHN-RK 233 Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341 I F Y++L GIND P D L K +G IN++ +NP +++IV F + Sbjct: 234 IVFAYLLLPGINDRPSDVRQLAKWFRGKKVMINVLQYNPTSNSRIKAPQKREIVAFKHQL 293 Query: 342 KRSGYSSPIRTPRGLDILAACGQLKSLSKRIPK 374 +++G +R G +I AACGQL + + K Sbjct: 294 EQAGLEVTMRVSHGREINAACGQLANTYNKFKK 326 >gi|149197716|ref|ZP_01874766.1| hypothetical protein LNTAR_20823 [Lentisphaera araneosa HTCC2155] gi|149139286|gb|EDM27689.1| hypothetical protein LNTAR_20823 [Lentisphaera araneosa HTCC2155] Length = 343 Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 116/314 (36%), Positives = 171/314 (54%), Gaps = 24/314 (7%) Query: 62 HLLNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVS 119 L+ HF I +I+ + S DG K L++ + IETV + R +LC+S Sbjct: 49 ELVRDHFEIPQLKIISRQDSKIDGASKLLVQ-----TEDGLNIETVILRIGTGRTSLCIS 103 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 SQ GC+ C+FC T T RNLT EI+ QV+LA G ++ RK+ Sbjct: 104 SQAGCTEKCTFCSTATLGFKRNLTLAEIIGQVILA--------------GEILRKEDRKV 149 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVM 238 NIV MGMGEPL N DNV KSL I S + S +R+T+ST G NI ++ V Sbjct: 150 RNIVFMGMGEPLRNTDNVLKSLEIMLSSAYMGLSSKRVTVSTIGITDNITKLRHSFPEVN 209 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLHA ++ +R+IL+PIN+ +P+E + + L++ + +Y+++K +NDSP Sbjct: 210 LALSLHASNDQVRDILMPINKTFPMETIKETLLSAQELASG-DLMIQYLLIKDLNDSPEQ 268 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 A L LKGI INLIP+N G + CS ++ + F + ++ S + R G D Sbjct: 269 AQELAAFLKGINCIINLIPYNDSMGMGNWKCSSEEKMSAFQDVLQESDFQVTRRHSLGRD 328 Query: 358 ILAACGQLKSLSKR 371 I AACGQL + +++ Sbjct: 329 IDAACGQLAAKNQK 342 >gi|302766119|ref|XP_002966480.1| hypothetical protein SELMODRAFT_85220 [Selaginella moellendorffii] gi|300165900|gb|EFJ32507.1| hypothetical protein SELMODRAFT_85220 [Selaginella moellendorffii] Length = 425 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 124/373 (33%), Positives = 199/373 (53%), Gaps = 38/373 (10%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQH 67 L+G ++L++ ++G R R Q++ +Y + Q +++S+ R L+++ Sbjct: 73 LLGKSEKQLQDLCEEMG----EKRFRGKQMYLLLYKVRKAEIQEFTNLSKGFREKLISEG 128 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP---EKSRGTLCVSSQVGC 124 + + I + S DGT K LL+ + IETV IP E +R T+CVSSQVGC Sbjct: 129 WEVGRSPIHHKVNSVDGTIKVLLKLKDSRL-----IETVGIPADEENNRLTVCVSSQVGC 183 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 L C+FC TG R+L EI+ QVL+ + +++SN+V Sbjct: 184 PLRCAFCATGKGGFTRSLKPHEIIEQVLVMEEIF-----------------KQRVSNVVF 226 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAIS 242 MGMGEP+ N +V + ++ +G+ +R IT+ST G VPN R ++ LA+S Sbjct: 227 MGMGEPMLNMASVLAAHRCLNEDIGI--GQRMITISTVG-VPNSIRKLAAHKLQSTLAVS 283 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA + LR +VP + YPL+ L++ C+ Y ++ RR++FEY +L G+NDS A L Sbjct: 284 LHAPNQRLREQIVPSAKSYPLDALMEDCKEYFSIT-GRRVSFEYTLLAGVNDSKELAFEL 342 Query: 303 IKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 ++L + +NLIP+NP + QK + TF E + + ++ +R RGLD A Sbjct: 343 GELLHHWDMSHHVNLIPYNPVADSLFQRPWQKSVQTFVETLAKCRVNASVRQTRGLDANA 402 Query: 361 ACGQLKSLSKRIP 373 ACGQL++ ++ P Sbjct: 403 ACGQLRNQFQKTP 415 >gi|266622739|ref|ZP_06115674.1| radical SAM enzyme, Cfr family [Clostridium hathewayi DSM 13479] gi|288865503|gb|EFC97801.1| radical SAM enzyme, Cfr family [Clostridium hathewayi DSM 13479] gi|291557353|emb|CBL34470.1| 23S rRNA m(2)A-2503 methyltransferase [Eubacterium siraeum V10Sc8a] gi|295092179|emb|CBK78286.1| 23S rRNA m(2)A-2503 methyltransferase [Clostridium cf. saccharolyticum K10] Length = 328 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 102/273 (37%), Positives = 149/273 (54%), Gaps = 23/273 (8%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 IETV+I + GT+CVS+QVGC + C FC +G VRNLT+ EI+ Q++L R Sbjct: 76 IETVFIKRRDGGTVCVSTQVGCPVGCIFCESGRNGFVRNLTSSEIVQQIILLR------- 128 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 RK++ IV MGMGEPL N+DN+ K++ I D GL+F IT+ST Sbjct: 129 --------------RKVNRIVFMGMGEPLFNYDNLIKAIHILRDRYGLNFPTDGITISTV 174 Query: 223 GFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281 G V + ++ EE + + L ISLHA + RN ++P R Y +E ++ Y N R+ Sbjct: 175 GPVDQLKKLREEHLKIQLTISLHAATQSARNRIIPHMRIYAIEDVVKQALSYSERHN-RK 233 Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341 I F Y++L GIND P D L K +G IN++ +NP +++IV F + Sbjct: 234 IVFAYLLLPGINDRPSDVRQLAKWFRGKKVMINVLQYNPTSNSRIKAPQKREIVAFKHQL 293 Query: 342 KRSGYSSPIRTPRGLDILAACGQLKSLSKRIPK 374 +++G +R G +I AACGQL + + K Sbjct: 294 EQAGLEVTMRVSHGREINAACGQLANTYNKFKK 326 >gi|21674009|ref|NP_662074.1| florfenicol resistance protein, putative [Chlorobium tepidum TLS] gi|81791215|sp|Q8KD71|RLMN_CHLTE RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|21647156|gb|AAM72416.1| florfenicol resistance protein, putative [Chlorobium tepidum TLS] Length = 374 Score = 182 bits (463), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 128/369 (34%), Positives = 193/369 (52%), Gaps = 43/369 (11%) Query: 14 REELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYP 73 R+EL E L ++G P R +Q+ +W+Y F+ MS +S+++R L + II+P Sbjct: 30 RKELTELLTRLGEPA----YRANQLHRWLYSNQALRFEEMSTLSKQLRQKLASEW-IIHP 84 Query: 74 --------EIVDEK-ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 E D ++ + T K+L++ + +E+V IP + R T C+SSQ+GC Sbjct: 85 ASLVGTERETTDASLVTGNPTAKFLIKLEDNEL-----VESVLIPSEERITACISSQIGC 139 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 L C+FC TG RNLTA EI QV L +E R ++NIV Sbjct: 140 PLRCTFCATGHMGFRRNLTASEITDQVFL-------------LEKEAQKRHWRGLTNIVF 186 Query: 185 MGMGEPLCNFDNVKKSL-SIASDSMGLSFSKRRITLSTSGF---VPNIARVGEEIGVMLA 240 MGMGEPL N DNV +S+ ++ S S+R+IT+ST G + IAR G + LA Sbjct: 187 MGMGEPLLNLDNVLESIGTLTEKDYQFSISERKITISTVGLPVEMDRIARSG--LKTKLA 244 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ISLH+ +R ++PI L+ L A Y ++ ++ +T Y++L+GINDSP DA Sbjct: 245 ISLHSADQLIRERMMPIAADITLDKLAKAINSYNSVT-SQPVTLVYMLLEGINDSPEDAR 303 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYL--CSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 L++ K + KINLI +N ++ CS K + F + + +G +R +G I Sbjct: 304 KLVRFAKRVLCKINLIDYNSIVTLKFKPGCSSSKTM--FIQQLLDAGLLVTVRKSQGATI 361 Query: 359 LAACGQLKS 367 AACGQL + Sbjct: 362 NAACGQLAT 370 >gi|305680861|ref|ZP_07403668.1| 23S rRNA m2A2503 methyltransferase [Corynebacterium matruchotii ATCC 14266] gi|305659066|gb|EFM48566.1| 23S rRNA m2A2503 methyltransferase [Corynebacterium matruchotii ATCC 14266] Length = 385 Score = 182 bits (463), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 121/359 (33%), Positives = 187/359 (52%), Gaps = 33/359 (9%) Query: 20 ALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEK 79 AL +G+P + R +Q+ K Y R D + M+D+ VR + + V + Sbjct: 49 ALADLGLP----KFRANQLAKHYYGRLEADPRTMTDLPAAVRDAVAEALFPTLMTPVRQV 104 Query: 80 ISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKL 138 + DG T K L R + +E+V + +R TLC+SSQ GC + C FC TG L Sbjct: 105 TADDGETHKTLWRLHDGTL-----LESVLMRYPNRATLCISSQAGCGMACPFCATGQAGL 159 Query: 139 VRNLTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197 RNL+ EI+ QV AR+++ + G ++SNIV MGMGEPL N+ V Sbjct: 160 DRNLSTGEIIDQVRSAARTMVAE---------------GSRLSNIVFMGMGEPLANYKRV 204 Query: 198 KKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNIL 254 ++ A G S+R +T+ST G P I ++ +E + V LA+SLH ++LR+ L Sbjct: 205 VSAVRQITAPVPQGFGISQRNVTVSTVGMAPMIRKLADENLSVTLAVSLHTPDDELRDTL 264 Query: 255 VPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIPA 311 VP+N ++ + ++DA +Y S RR++ EY +++ IND A L K L G A Sbjct: 265 VPVNNRWSVAEVLDAAAYYADRS-GRRVSIEYALIRDINDQGWRADLLGKKLHKALGSKA 323 Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 +NLIP NP PG ++ S ++ F + G + +R +G +I AACGQL + ++ Sbjct: 324 HVNLIPLNPTPGSKWDASPREQQAEFVRRVIAQGVTCTVRDTKGQEIAAACGQLAAENR 382 >gi|154509153|ref|ZP_02044795.1| hypothetical protein ACTODO_01674 [Actinomyces odontolyticus ATCC 17982] gi|153798787|gb|EDN81207.1| hypothetical protein ACTODO_01674 [Actinomyces odontolyticus ATCC 17982] Length = 406 Score = 182 bits (463), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 123/357 (34%), Positives = 185/357 (51%), Gaps = 24/357 (6%) Query: 18 EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD 77 ++ L +G+P R Q+ + + D MSDI + ++ + P++V Sbjct: 55 KQVLKDLGLPA----FRADQLSRHYFTHFQADPANMSDIPAGMHEAVSD---ALLPKLVT 107 Query: 78 EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137 + +S + ++ R G ++E+V + R TLCVSSQ GC + C FC TG Sbjct: 108 KVVSLEADGGRTIKDLWRLYDG-AQVESVLMRYPQRTTLCVSSQAGCGMACPFCATGQMG 166 Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197 L RNL+ EI+ QV A++ C D + P+ K+SN+V MGMGEPL N+ V Sbjct: 167 LTRNLSTAEIVDQVREAQA------SCRDGKLAGGPT---KLSNVVFMGMGEPLANYKTV 217 Query: 198 KKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNIL 254 +L I G S R IT+ST G VP I ++ GE + V LA+SLHA +DLR+ L Sbjct: 218 VAALHRLIDPAPEGFGMSARNITVSTVGLVPAIKKLAGEGMPVTLAVSLHAPDDDLRDEL 277 Query: 255 VPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP---A 311 +PIN ++ + L+DA R Y L+ RR++ EY ++K +ND A L L Sbjct: 278 IPINSRWKVGELLDAARGY-FLATGRRVSIEYALIKDMNDQEWRAQLLADELNKRGHGWV 336 Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 +N IP NP PG + S + F + ++ +G ++ IR RG DI ACGQL ++ Sbjct: 337 HVNPIPLNPTPGSIWTASTRAAQEAFVKRLQDNGIATSIRDTRGSDIDGACGQLATV 393 >gi|300780939|ref|ZP_07090793.1| cfr family radical SAM enzyme [Corynebacterium genitalium ATCC 33030] gi|300532646|gb|EFK53707.1| cfr family radical SAM enzyme [Corynebacterium genitalium ATCC 33030] Length = 377 Score = 182 bits (463), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 119/370 (32%), Positives = 192/370 (51%), Gaps = 37/370 (10%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 + EE EAL ++G+P + R QI + Y R D M+D+ R L+ + Sbjct: 28 LSEEERIEALGELGLP----KFRADQIARHYYGRFEADPSTMTDLPAAQRELVKDS---L 80 Query: 72 YPEIVD--EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 +P ++ K+ D T K L R + +E+V + R TLC+SSQ GC + Sbjct: 81 FPRLLTPVRKVETDNGDTTKTLWRLHDGIL-----LESVLMRYPGRATLCISSQAGCGMA 135 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC TG L RNL+ EI+ QV A +++ + G +++N+V MGM Sbjct: 136 CPFCATGQGGLDRNLSTAEIVDQVREAAAMM--------------EAEGSRLTNVVFMGM 181 Query: 188 GEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 GEPL N++ V ++ ++ G S+R +T+ST G P I ++ +E + V LA+SLH Sbjct: 182 GEPLANYNRVVSAVRQIVSPAPHGFGISQRNVTVSTVGLAPAIRKLADEGLSVTLAVSLH 241 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 ++LR+ LVP+N ++ ++ ++DA R+Y RR++ EY +++ IND A L + Sbjct: 242 TPDDELRDELVPMNNRFTVQDVLDAARYYAD-QTGRRVSIEYALIRDINDHDFRADMLGQ 300 Query: 305 ILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L G +NLIP NP PG ++ S ++ F + G + +R +G +I AA Sbjct: 301 KLHDALGPLVHVNLIPLNPTPGSKWDASPRERQDEFVRRVIAQGVTCTVRDTKGQEIAAA 360 Query: 362 CGQLKSLSKR 371 CGQL + K+ Sbjct: 361 CGQLAADEKQ 370 >gi|328948233|ref|YP_004365570.1| ribosomal RNA large subunit methyltransferase N [Treponema succinifaciens DSM 2489] gi|328448557|gb|AEB14273.1| Ribosomal RNA large subunit methyltransferase N [Treponema succinifaciens DSM 2489] Length = 342 Score = 182 bits (463), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 123/363 (33%), Positives = 180/363 (49%), Gaps = 33/363 (9%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK SL G+ EE+ +A+ Q R QI++WI +G F+ M++I + R L Sbjct: 3 KKVSLSGLFPEEIAKAI------QLSPLFRAKQIYEWIS-KGAESFEQMTNIDKTTRKFL 55 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-SRGTLCVSSQVG 123 ++ + ++ + DGT K + + + IETV + +K R T CVS Q G Sbjct: 56 EENVLLRSSKVTEVLKDPDGTIKLQI-----SLSDGLAIETVLLTDKEGRKTACVSCQAG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC TG L RNLTA EI+ + G + NIV Sbjct: 111 CAMGCAFCQTGRLGLGRNLTAGEIVEEFFFMEKEAGT------------------LDNIV 152 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAIS 242 MGMGEPL N D ++K+++I +D G S RRITLST G + I + E V LAIS Sbjct: 153 FMGMGEPLQNLDAIRKAVAILTDKKGRGLSPRRITLSTCGLISGIYELAENGPFVRLAIS 212 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 L LR L+P+++ PL L A + Y +RIT E +L G N A + Sbjct: 213 LTTADPALREQLMPVSKGNPLPELKTAIKFYSE-KTGKRITLEAALLSGQNTGLESAKRM 271 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + G+ A INLIP+NP G ++ +K+ F + ++ + +RT RG+ I AC Sbjct: 272 AEFAAGLDAYINLIPWNPVQGLQFKTPSRKECEEFVKILQNANLKVNLRTRRGVKIGGAC 331 Query: 363 GQL 365 GQL Sbjct: 332 GQL 334 >gi|225021120|ref|ZP_03710312.1| hypothetical protein CORMATOL_01132 [Corynebacterium matruchotii ATCC 33806] gi|224946120|gb|EEG27329.1| hypothetical protein CORMATOL_01132 [Corynebacterium matruchotii ATCC 33806] Length = 389 Score = 182 bits (463), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 121/359 (33%), Positives = 186/359 (51%), Gaps = 33/359 (9%) Query: 20 ALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEK 79 AL +G+P + R +Q+ K Y R D + M+D+ VR + + V + Sbjct: 53 ALADLGLP----KFRANQLAKHYYGRLEADPRTMTDLPAAVRDAVAEALFPTLMTPVRQV 108 Query: 80 ISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKL 138 + DG T K L R + +E+V + +R TLC+SSQ GC + C FC TG L Sbjct: 109 TADDGETHKTLWRLHDGTL-----LESVLMRYPNRATLCISSQAGCGMACPFCATGQAGL 163 Query: 139 VRNLTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197 RNL+ EI+ QV AR++ + G ++SNIV MGMGEPL N+ V Sbjct: 164 DRNLSTGEIIDQVRSAARTMAAE---------------GNRLSNIVFMGMGEPLANYKRV 208 Query: 198 KKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNIL 254 ++ A G S+R +T+ST G P I ++ +E + V LA+SLH ++LR+ L Sbjct: 209 VSAVRQITAPVPQGFGISQRNVTVSTVGMAPMIRKLADENLSVTLAVSLHTPDDELRDTL 268 Query: 255 VPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIPA 311 VP+N ++ + ++DA +Y S RR++ EY +++ IND A L K L G A Sbjct: 269 VPVNNRWSVAEVLDAAAYYADRS-GRRVSIEYALIRDINDQGWRADLLGKKLHKALGSKA 327 Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 +NLIP NP PG ++ S ++ F + G + +R +G +I AACGQL + ++ Sbjct: 328 HVNLIPLNPTPGSKWDASPREQQAEFVRRVIAQGVTCTVRDTKGQEIAAACGQLAAENR 386 >gi|332298026|ref|YP_004439948.1| Ribosomal RNA large subunit methyltransferase N [Treponema brennaborense DSM 12168] gi|332181129|gb|AEE16817.1| Ribosomal RNA large subunit methyltransferase N [Treponema brennaborense DSM 12168] Length = 342 Score = 182 bits (463), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 124/372 (33%), Positives = 183/372 (49%), Gaps = 35/372 (9%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M + K S+ G++ EEL +P + R QI+KW+ G FQ M ++ Q + Sbjct: 1 MATMDKISVAGLLPEELS------ALPGVSPQFRGKQIFKWLG-NGAASFQEMRNLPQHL 53 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF-PARCIGGPVEIETVYIPEKS-RGTLCV 118 R L++ ++ +I E DGT K + CI ETV + + S R T CV Sbjct: 54 RDSLSETAAVRSSQIAQELRDPDGTVKLQITLHDGACI------ETVLLTDSSGRKTACV 107 Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 S Q GC++ C+FC TG L RNL A EI+ Q L + G K Sbjct: 108 SCQAGCAMGCAFCQTGKLGLARNLDAAEIVEQFLYLEQVSG------------------K 149 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238 + NIV MGMGEP+ N V+K++++ + G S RRIT+STSG + I + + M Sbjct: 150 LDNIVFMGMGEPMMNLSAVRKAVAVLTHPEGRGLSARRITVSTSGIIKGIYDLADNGPHM 209 Query: 239 -LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 LA+SL +LR L+P+ + PL L A +Y S +R T E +L G+N Sbjct: 210 RLAVSLTTADPELRERLMPVTKGNPLPELQKAIAYYTEKSK-KRCTLEAALLAGMNTGTA 268 Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 A LI+ +G+ INLIP+NP PG + + F ++++ + +RT RG Sbjct: 269 SAERLIEFARGLDVHINLIPWNPVPGLPFAEPSAAECTAFVRLLEKARLNVTLRTRRGRK 328 Query: 358 ILAACGQLKSLS 369 I ACGQL ++ Sbjct: 329 IGGACGQLGKIT 340 >gi|293189850|ref|ZP_06608564.1| radical SAM enzyme, Cfr family [Actinomyces odontolyticus F0309] gi|292821265|gb|EFF80210.1| radical SAM enzyme, Cfr family [Actinomyces odontolyticus F0309] Length = 426 Score = 182 bits (462), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 123/356 (34%), Positives = 184/356 (51%), Gaps = 24/356 (6%) Query: 18 EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD 77 ++ L +G+P R Q+ + + D MSDI + ++ + P++V Sbjct: 75 KQVLKDLGLPA----FRADQLSRHYFTHFEADPANMSDIPAGMHEAVSD---ALLPKLVT 127 Query: 78 EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137 + +S + ++ R G ++E+V + R TLCVSSQ GC + C FC TG Sbjct: 128 KVVSLEADGGRTIKDLWRLYDG-AQVESVLMRYPQRTTLCVSSQAGCGMACPFCATGQMG 186 Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197 L RNL+ EI+ QV A++ C D + P+ K+SN+V MGMGEPL N+ V Sbjct: 187 LTRNLSTAEIVDQVREAQA------SCRDGKLAGGPT---KLSNVVFMGMGEPLANYKTV 237 Query: 198 KKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNIL 254 +L I G S R IT+ST G VP I ++ GE + V LA+SLHA +DLR+ L Sbjct: 238 VAALHRLIDPAPEGFGMSARNITVSTVGLVPAIKKLAGEGMPVTLAVSLHAPDDDLRDEL 297 Query: 255 VPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP---A 311 +PIN ++ + L+DA R Y L+ RR++ EY ++K +ND A L L Sbjct: 298 IPINSRWKVGELLDAARGY-FLATGRRVSIEYALIKNMNDQEWRAQLLADELNKRGHGWV 356 Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 +N IP NP PG + S + F + ++ +G ++ IR RG DI ACGQL + Sbjct: 357 HVNPIPLNPTPGSIWTASTRAAQEAFVKRLQDNGIATSIRDTRGSDIDGACGQLAT 412 >gi|30687969|ref|NP_850319.1| radical SAM domain-containing protein [Arabidopsis thaliana] gi|330254611|gb|AEC09705.1| radical SAM domain-containing protein [Arabidopsis thaliana] Length = 431 Score = 182 bits (462), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 135/385 (35%), Positives = 199/385 (51%), Gaps = 40/385 (10%) Query: 9 LIGMMREELEE-ALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQ 66 LIGM EL+E A+ + I Q R + Q+ IY R + + S++ R L++ Sbjct: 64 LIGMSEPELQELAINLVLIFQEGYRGK--QLHHLIYKRKVNKVEDFSNLPLTFRKGLVDG 121 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP----EK--SRGTLCVSS 120 F + I + DGT K LL+ + IETV IP EK +R T CVSS Sbjct: 122 GFKVGRSPIYQTVTATDGTIKLLLKLEDN-----LLIETVGIPVQDDEKGITRLTACVSS 176 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC L CSFC TG RNL EI+ QVL ED+ +++ Sbjct: 177 QVGCPLRCSFCATGKGGFSRNLQRHEIIEQVL----------AIEDV-------FKHRVT 219 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVM 238 N+V MGMGEP+ N +V + + + +R IT+ST G VPN + ++ Sbjct: 220 NVVFMGMGEPMLNLKSVLDAHRCLNKD--IEIGQRMITISTVG-VPNTIKKLASHKLQST 276 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLHA + LR +VP + YPLE ++ CR Y +N RR++FEY +L G+ND Sbjct: 277 LAVSLHAPNQSLREKIVPSAKAYPLEAIMKDCRDYFQETN-RRVSFEYALLAGVNDQVEH 335 Query: 299 ALNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 A+ L ++L+ G +NLIP+NP G EY +K ++ F+ ++ ++ +R RGL Sbjct: 336 AVELAELLREWGKTYHVNLIPYNPIEGSEYQRPYKKAVLAFAAALESRKITASVRQTRGL 395 Query: 357 DILAACGQLKSLSKRIPKVPRQEMQ 381 D AACGQL++ ++ P + + Q Sbjct: 396 DASAACGQLRNKFQKSPLLTETDSQ 420 >gi|309811464|ref|ZP_07705246.1| 23S rRNA m2A2503 methyltransferase [Dermacoccus sp. Ellin185] gi|308434515|gb|EFP58365.1| 23S rRNA m2A2503 methyltransferase [Dermacoccus sp. Ellin185] Length = 394 Score = 182 bits (462), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 130/362 (35%), Positives = 191/362 (52%), Gaps = 30/362 (8%) Query: 19 EALLK-IGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQHFSIIYPEIV 76 +AL K +G+P R Q+ + R + D M+D+ + R ++ Q + I Sbjct: 47 QALAKELGLPA----FRAKQLSNHYFERFVADPAEMTDLPKNGREEMVAQLMPTLLTSI- 101 Query: 77 DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136 + + DG L+ R G + +E+V + R T+C+SSQ GC + C FC TG + Sbjct: 102 -KTLVADGGNT--LKQVHRLFDGAL-VESVIMRYPGRVTMCISSQAGCGMNCPFCATGQE 157 Query: 137 KLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194 L RNLT EI+ QV+ LL G+ PG +D E ++SN+V MGMGE L N+ Sbjct: 158 GLTRNLTTAEIVEQVVAGARLLRSGELPGLDDDER----ETPLRVSNVVFMGMGEALANY 213 Query: 195 ----DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSND 249 D +K+ +S A + GL S R +T+ST G VP I ++ E I V LA+SLHA ++ Sbjct: 214 RQAIDAIKRLVSPAPE--GLGMSARGVTMSTVGLVPAIDKLAAEGIPVTLALSLHAPDDE 271 Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--- 306 LRN LVPIN ++ ++ +DA Y + RR++ EY ++K IND A L K L Sbjct: 272 LRNELVPINTRWSVDEALDAAHRY-FEATGRRVSIEYALIKDINDQGWRADLLAKKLNAR 330 Query: 307 -KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 KG +N IP NP PG ++ S + F E ++ G + +R RG DI ACGQL Sbjct: 331 GKGW-VHVNPIPLNPTPGSKWTASRKGVEQNFVERLRAGGIPTTVRDTRGSDIDGACGQL 389 Query: 366 KS 367 + Sbjct: 390 AA 391 >gi|218189834|gb|EEC72261.1| hypothetical protein OsI_05406 [Oryza sativa Indica Group] Length = 395 Score = 182 bits (462), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 126/375 (33%), Positives = 187/375 (49%), Gaps = 40/375 (10%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQH 67 L+G+ +L + + +G R Q+ +Y + Q S + + R L+ Sbjct: 36 LLGLSEPDLRQLAVDLG----QQSYRGKQLHDLLYKSRAKQIQEFSHVPKVFREALVGAG 91 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-----SRGTLCVSSQV 122 + + + + DGT K LL+ + IETV IP SR T CVSSQV Sbjct: 92 WKVGRSPVHHAVTASDGTTKILLKLEDNRL-----IETVGIPVDDDKGPSRLTACVSSQV 146 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L CSFC TG RNL A EI+ QVL + + +++N+ Sbjct: 147 GCPLRCSFCATGKGGFARNLHAHEIVEQVL-----------------AIEETFQHRVTNV 189 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLA 240 V MGMGEP+ N +V ++ + L +R IT+ST G VPN + ++ LA Sbjct: 190 VFMGMGEPMLNLKSVLEAHRCLNKE--LKIGQRMITISTVG-VPNTIKKLASHKLQSTLA 246 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA + LR +VP + YPLE L+D C++Y L RR++FEY +L GIND+ A Sbjct: 247 VSLHAPNQKLRETIVPSAKSYPLEALMDDCKNY-FLETGRRVSFEYTLLAGINDAKEHAE 305 Query: 301 NLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 L ++L G +NLIP+NP G EY +K + F + ++ + +R RGLD Sbjct: 306 ELAELLHTCGGGYHVNLIPYNPIQGSEYKRPYRKVVQAFVDALEARKITVSVRQTRGLDA 365 Query: 359 LAACGQLKSLSKRIP 373 AACGQL++ ++ P Sbjct: 366 NAACGQLRNEFQKNP 380 >gi|205829899|sp|A4X4J7|RLMN_SALTO RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase Length = 372 Score = 182 bits (462), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 114/343 (33%), Positives = 179/343 (52%), Gaps = 25/343 (7%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEIVDEKISCD--GTRK 87 R R Q+ + R +RD + M+D+ R L +++ P +++CD T K Sbjct: 44 RFRARQVSTHYFGRLVRDPEQMTDLPAATREKLADQLLPTLLTPV---RELACDDGATHK 100 Query: 88 WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147 L R + +E+V + R T+C+SSQ GC + C FC TG L RNL+ EI Sbjct: 101 ALWRLHDGSL-----VESVLMGYPDRVTVCLSSQAGCGMACPFCATGQAGLTRNLSTAEI 155 Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IAS 205 + Q + + + ++S +V MGMGEPL N++ V ++ +A Sbjct: 156 VDQAVYLAGV---------AASGAVAGSPPRLSRVVFMGMGEPLANYNRVVAAIRRLVAP 206 Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLE 264 GL S+R IT+ST G VP I R+ E++ V LA+SLHA ++LR+ LVP+N+++ + Sbjct: 207 SPEGLGLSQRHITVSTVGLVPAIRRLASEDLSVTLALSLHAPDDELRDELVPVNQRWKVS 266 Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGC 324 +++A Y RR++ EY M+K +ND P A L ++L A +NLIP NP PG Sbjct: 267 EVLEAAWEY-AARTGRRVSIEYAMIKDVNDQPWRADLLGRLLADRLAHVNLIPLNPTPGS 325 Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 + S + F ++ +G S+ +R RG +I ACGQL + Sbjct: 326 RWDASPKPVEREFVRRLRAAGVSTTVRDTRGREIDGACGQLAA 368 >gi|145593878|ref|YP_001158175.1| radical SAM protein [Salinispora tropica CNB-440] gi|145303215|gb|ABP53797.1| radical SAM enzyme, Cfr family [Salinispora tropica CNB-440] Length = 353 Score = 182 bits (462), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 114/343 (33%), Positives = 179/343 (52%), Gaps = 25/343 (7%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEIVDEKISCD--GTRK 87 R R Q+ + R +RD + M+D+ R L +++ P +++CD T K Sbjct: 25 RFRARQVSTHYFGRLVRDPEQMTDLPAATREKLADQLLPTLLTPV---RELACDDGATHK 81 Query: 88 WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147 L R + +E+V + R T+C+SSQ GC + C FC TG L RNL+ EI Sbjct: 82 ALWRLHDGSL-----VESVLMGYPDRVTVCLSSQAGCGMACPFCATGQAGLTRNLSTAEI 136 Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IAS 205 + Q + + + ++S +V MGMGEPL N++ V ++ +A Sbjct: 137 VDQAVYLAGV---------AASGAVAGSPPRLSRVVFMGMGEPLANYNRVVAAIRRLVAP 187 Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLE 264 GL S+R IT+ST G VP I R+ E++ V LA+SLHA ++LR+ LVP+N+++ + Sbjct: 188 SPEGLGLSQRHITVSTVGLVPAIRRLASEDLSVTLALSLHAPDDELRDELVPVNQRWKVS 247 Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGC 324 +++A Y RR++ EY M+K +ND P A L ++L A +NLIP NP PG Sbjct: 248 EVLEAAWEY-AARTGRRVSIEYAMIKDVNDQPWRADLLGRLLADRLAHVNLIPLNPTPGS 306 Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 + S + F ++ +G S+ +R RG +I ACGQL + Sbjct: 307 RWDASPKPVEREFVRRLRAAGVSTTVRDTRGREIDGACGQLAA 349 >gi|320532046|ref|ZP_08032934.1| radical SAM enzyme, Cfr family [Actinomyces sp. oral taxon 171 str. F0337] gi|320135737|gb|EFW27797.1| radical SAM enzyme, Cfr family [Actinomyces sp. oral taxon 171 str. F0337] Length = 391 Score = 182 bits (462), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 125/349 (35%), Positives = 178/349 (51%), Gaps = 36/349 (10%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD--EKISCDGTRK--- 87 R Q+ + + R M+D+ R Q + + PE++ + DG R Sbjct: 54 FRADQLSRHYFTHFTRHSADMTDLPAAQR---EQLCAELLPELITPVRALRADGGRTIKH 110 Query: 88 -WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEE 146 W L V +E+V + K R TLCVSSQ GC + C FC TG L RNL+ E Sbjct: 111 LWELH-------DGVRVESVLMRYKERTTLCVSSQAGCGMACPFCATGQMGLTRNLSTGE 163 Query: 147 ILLQVLLA--RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS-- 202 I+ QV A S G+ G P+ ++SN+V MGMGEP+ N+ NV +L Sbjct: 164 IVEQVRHAAQASAAGELTGG--------PA---RLSNVVFMGMGEPMVNYKNVVGALHRL 212 Query: 203 IASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKY 261 I G S R IT+ST G VP I R+ GE + V LA+SLHA ++LR+ L+P+N K+ Sbjct: 213 IDPAPEGFGLSARGITVSTVGLVPLIRRLAGEGLPVTLAVSLHAPDDELRDELIPVNSKW 272 Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPF 318 + L+DA Y L+ RR++ EY ++K +ND A L L A +N IP Sbjct: 273 KVGELLDAAHDY-FLATGRRVSIEYALIKDMNDHAWRAQLLADELNRRDTGWAHVNPIPL 331 Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 NP PG + CS+ F + ++R+G ++ +R RG DI ACGQL + Sbjct: 332 NPTPGSIWTCSEVAVQDMFVDTLRRAGITTTVRDTRGSDIDGACGQLAT 380 >gi|145340644|ref|XP_001415431.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144575654|gb|ABO93723.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 340 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 118/348 (33%), Positives = 176/348 (50%), Gaps = 40/348 (11%) Query: 33 MRTSQIWKWIYV------RGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTR 86 R QI +Y R + DF +S +E L + + + + DGT Sbjct: 4 FRGKQIADHLYAPNGASARSVDDFTTLSKKLRE--ELKSANVRVGRSRRHHVAAASDGTA 61 Query: 87 KWLLRFPARCIGGPVEIETVYIPE----KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNL 142 K LLR + +ETV IP K+R T CVSSQVGC + C+FC TG RNL Sbjct: 62 KLLLRLDDDRV-----VETVGIPATENGKNRLTACVSSQVGCPMRCTFCATGKGGFARNL 116 Query: 143 TAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS 202 EI+ QVL G+++SN+V MGMGEPL N NV K+ Sbjct: 117 APHEIVDQVLALEEYF-----------------GQRVSNVVFMGMGEPLLNVPNVLKAHE 159 Query: 203 IASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKY 261 + +G+ R IT+ST G +I ++ ++ +LA+SLHA + +LR ++P + Y Sbjct: 160 ALNKEIGI--GARHITISTVGVRGSIEKLAHAQLQSVLAVSLHAPNQELRETIIPSAKVY 217 Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFN 319 P+E L+ C Y ++ RR+TFEY +L GIND P A L ++L + + + +NLIP+N Sbjct: 218 PMEDLLQDCEQY-FVATGRRVTFEYTLLGGINDQPEHAKELGRLLYARNLASHVNLIPYN 276 Query: 320 PWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 P +Y + + F + ++ + IR RGL+ AACGQL++ Sbjct: 277 PVDDSDYQRPSRATVYAFRDILEGLNVPASIRQTRGLEAAAACGQLRN 324 >gi|78186813|ref|YP_374856.1| hypothetical protein Plut_0951 [Chlorobium luteolum DSM 273] gi|123771083|sp|Q3B4B8|RLMN_PELLD RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|78166715|gb|ABB23813.1| 23S rRNA m(2)A-2503 methyltransferase [Chlorobium luteolum DSM 273] Length = 361 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 130/373 (34%), Positives = 193/373 (51%), Gaps = 34/373 (9%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 ++ +++ + +EL+EAL I PQ R +Q+ +W++ F M+ +S +R L Sbjct: 4 ERSNILNLRMDELKEALAAINEPQ----WRAAQLHQWLFSHRAGSFDDMTTLSLPLRRKL 59 Query: 65 NQHFSIIYP--EIVDEKIS---CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119 + F I P E DE + T K L++ P +ETV IP +R T CVS Sbjct: 60 AESFYIQQPVTEKHDETMEGSPAGATEKLLIQLP-----DGERVETVLIPGPNRMTACVS 114 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 +Q GC L CSFC TG RNL++ EI QV +L + + E I Sbjct: 115 AQAGCLLGCSFCATGQMGFRRNLSSGEITGQVWALSDMLQE----RNREA--------SI 162 Query: 180 SNIVMMGMGEPLCNFDNVKKS-LSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGV 237 SNIV MGMGEPL N NV ++ L++++ S S+R+IT+ST G P I R+ + + Sbjct: 163 SNIVFMGMGEPLLNTANVIEAVLNLSTRKYRFSTSQRKITISTVGITPEIDRLADTGLKT 222 Query: 238 MLAISLHAVSNDLRNILVP-INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 LA+SLH+ + R L+P R+YPL+ L ++ Y +T Y++LKGINDS Sbjct: 223 KLAVSLHSAIQEKREALMPQAARQYPLDRLRESLIGYAS-KTGEPVTLAYMLLKGINDSE 281 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEY--LCSDQKDIVTFSECIKRSGYSSPIRTPR 354 DA LI+ G KINLI +NP ++ +C ++ F + ++ +G IR Sbjct: 282 MDAKRLIRYASGFFCKINLIDYNPIVNIKFEPVCDGTRE--RFRDILQDAGLQVTIRKSY 339 Query: 355 GLDILAACGQLKS 367 G I AACGQL + Sbjct: 340 GTPINAACGQLAA 352 >gi|296117650|ref|ZP_06836234.1| radical SAM enzyme, Cfr family [Corynebacterium ammoniagenes DSM 20306] gi|295969381|gb|EFG82622.1| radical SAM enzyme, Cfr family [Corynebacterium ammoniagenes DSM 20306] Length = 367 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 116/360 (32%), Positives = 184/360 (51%), Gaps = 37/360 (10%) Query: 21 LLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE-- 78 L ++G+P + R Q+ K YV D M+DI + R + + F +P ++ + Sbjct: 36 LDELGLP----KFRAKQLAKHYYVHHTVDVDEMTDIPESARKDIQEKF---FPPLMTQIR 88 Query: 79 KISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136 S D T K L R + +E+V + R TLC+SSQ GC + C FC TG Sbjct: 89 GFSTDDGETTKSLWRLHDGTL-----LESVLMRYPGRATLCISSQAGCGMACPFCATGQG 143 Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196 L RNL+A EI+ Q+ A + + G +++N+V MGMGEPL N+ Sbjct: 144 GLDRNLSAAEIVEQLRNASK--------------TMEAEGGRLTNVVFMGMGEPLANYKR 189 Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILV 255 V ++ +D G S R +T+ST G P + ++ +E + LAISLH ++ RN LV Sbjct: 190 VVHAVKQFTDPDGFGMSMRNVTISTVGLAPAVRKLADEGLSCTLAISLHTPDDEFRNELV 249 Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA----LNLIKILKGIPA 311 P+N+++ ++ ++DA R+Y +RR++ EY +++ ND A L K+L G Sbjct: 250 PVNQRWDVDEILDAARYYVD-KTSRRVSIEYALIRDKNDQDFRADMLGQKLHKVL-GSKV 307 Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 +NLIP NP PG E+ S ++ F + G +R +G +I AACGQL + ++ Sbjct: 308 HVNLIPLNPTPGSEWDASPKERQEEFVRRVIAQGVPCTVRDTKGQEIAAACGQLAAEERQ 367 >gi|212715800|ref|ZP_03323928.1| hypothetical protein BIFCAT_00701 [Bifidobacterium catenulatum DSM 16992] gi|212661167|gb|EEB21742.1| hypothetical protein BIFCAT_00701 [Bifidobacterium catenulatum DSM 16992] Length = 406 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 126/365 (34%), Positives = 191/365 (52%), Gaps = 30/365 (8%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 M EE +G+P + R Q+ Y + + SD R + I Sbjct: 59 MTEEERITKAKDLGLP----KFRVKQLANHYYGHFDVNAEEFSDFPAAKR---VEAAEIF 111 Query: 72 YPEIVDE---KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 +P ++ E +++ +GT ++ R G + IE+V + +R TLC+SSQVGC + C Sbjct: 112 FPTLITEVTRQVADEGT---TIKTLWRLFDGSL-IESVLMRYPTRTTLCISSQVGCGMGC 167 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG L RN++A EI+ QV +A + D G V GR +SNIV MGMG Sbjct: 168 PFCATGQLGLTRNMSAGEIVEQVRVAAKAMRD--------GEVAGGPGR-LSNIVFMGMG 218 Query: 189 EPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHA 245 EP+ N+ +V ++ A G S R IT+ST G VP I ++ E I V LA+SLHA Sbjct: 219 EPMGNYKSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLMAEGIPVRLAVSLHA 278 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +++LR+ LVP+N+++ ++DA Y L++ RR++ EY +++GIND A L K Sbjct: 279 PNDELRDELVPMNKRFNTTQVLDAAHDYY-LASKRRVSIEYALMRGINDQAEHAKLLAKR 337 Query: 306 LKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 L A +N IP NP G + S +D F + + ++G ++ +R RG DI AC Sbjct: 338 LNHYGDNWAHVNPIPLNPIEGSRWTASKPEDEQQFLDILHKAGITATLRDTRGQDIDGAC 397 Query: 363 GQLKS 367 GQL + Sbjct: 398 GQLAA 402 >gi|86742258|ref|YP_482658.1| ribosomal RNA large subunit methyltransferase N [Frankia sp. CcI3] gi|123764529|sp|Q2J713|RLMN_FRASC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|86569120|gb|ABD12929.1| 23S rRNA m(2)A-2503 methyltransferase [Frankia sp. CcI3] Length = 421 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 130/370 (35%), Positives = 186/370 (50%), Gaps = 35/370 (9%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIR--DFQGMSDISQEVRHLLNQ 66 L + R+E + + +G P R Q+ + Y R I + + M+D+ + R L Sbjct: 38 LADLTRQERRDVAVSLGQPA----FRADQVARHYYARLIAADEPEAMTDLPERDRQPLLD 93 Query: 67 HFSIIYPEIVDEKISCDG--TRK--WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 V +SCD TRK W R + G +E+V + R T+CVSSQ Sbjct: 94 ALLPRLLVPV-RTLSCDDGLTRKTAW------RTVDG-ASLESVIMRYPDRATVCVSSQA 145 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLG--DFPGCEDIEGMVIPSVGRKIS 180 GC + C FC TG L RNL+ EI+ QV+ A +L + G E ++S Sbjct: 146 GCGMGCPFCATGQGGLTRNLSTAEIVEQVVHAARVLRRRELAGGET-----------RLS 194 Query: 181 NIVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGV 237 N+V MGMGEPL N+ V +L A GL S R +T+ST G VP I R+ GE + V Sbjct: 195 NVVFMGMGEPLANYAAVIAALRRLTAHPPEGLGLSARGLTVSTVGLVPAIRRLAGEGLPV 254 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 LA+SLHA + LRN LVPIN ++P+ ++ A Y ++ RR++ EY ++ G+ND Sbjct: 255 TLAVSLHAPDDVLRNELVPINTRWPVVEVLAAAWEYAEVTG-RRVSVEYALIDGVNDDVG 313 Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 A L +L G A +NLIP NP G + S F ++ G + +R RG + Sbjct: 314 RADALADLLVGRLAHVNLIPLNPTGGSSWRASAPAGQRAFVRRLRDRGIVTTVRDTRGRE 373 Query: 358 ILAACGQLKS 367 I AACGQL + Sbjct: 374 IAAACGQLAA 383 >gi|229820988|ref|YP_002882514.1| radical SAM enzyme, Cfr family [Beutenbergia cavernae DSM 12333] gi|229566901|gb|ACQ80752.1| radical SAM enzyme, Cfr family [Beutenbergia cavernae DSM 12333] Length = 383 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 123/350 (35%), Positives = 177/350 (50%), Gaps = 38/350 (10%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD--EKISCDGTRK--- 87 R Q+ + + RD MSD+ R L + + P++V + DG Sbjct: 55 FRADQLSRHYFTHLTRDADAMSDLPAASREDL---VAALLPQLVSPVRTMEADGGATVKT 111 Query: 88 -WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEE 146 W L A+ +E+V + + R TLCVSSQ GC + C FC TG L RNL+ E Sbjct: 112 LWALFDDAK-------VESVLMRYRDRTTLCVSSQAGCGMACPFCATGQLGLTRNLSTAE 164 Query: 147 ILLQVLLARSL--LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS-- 202 I+ QV LA + GD PG ++SN+V MGMGEPL N+ V ++ Sbjct: 165 IVEQVRLAAAACRAGDLPGGPT-----------RLSNVVFMGMGEPLANYRAVIGAVRRM 213 Query: 203 IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKY 261 + GL S R +T+ST G VP I ++ E I V LA+SLHA ++LR+ LVPIN ++ Sbjct: 214 VEPAPSGLGMSARNVTVSTVGLVPAIDKLAAEGIPVTLAVSLHAPDDELRSELVPINTRW 273 Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL----KGIPAKINLIP 317 + +DA R Y +++ RR++ EY +++ +ND A L K L +G +N IP Sbjct: 274 SVGEALDAARRYFDITH-RRVSIEYALIRDVNDHGWRADLLAKELVARGRGW-VHVNPIP 331 Query: 318 FNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 NP PG + SD F ++ +G + IR RG DI ACGQL + Sbjct: 332 LNPTPGSRWTASDPGVEAEFVARLRHAGIPTTIRDTRGSDIDGACGQLAA 381 >gi|297598414|ref|NP_001045547.2| Os01g0973400 [Oryza sativa Japonica Group] gi|57899226|dbj|BAD87375.1| radical SAM domain-containing protein-like [Oryza sativa Japonica Group] gi|57899699|dbj|BAD87419.1| radical SAM domain-containing protein-like [Oryza sativa Japonica Group] gi|215697144|dbj|BAG91138.1| unnamed protein product [Oryza sativa Japonica Group] gi|215708729|dbj|BAG93998.1| unnamed protein product [Oryza sativa Japonica Group] gi|215740846|dbj|BAG97002.1| unnamed protein product [Oryza sativa Japonica Group] gi|215765571|dbj|BAG87268.1| unnamed protein product [Oryza sativa Japonica Group] gi|255674123|dbj|BAF07461.2| Os01g0973400 [Oryza sativa Japonica Group] Length = 397 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 124/374 (33%), Positives = 186/374 (49%), Gaps = 38/374 (10%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQH 67 L+G+ +L + + +G R Q+ +Y + Q S + + R L+ Sbjct: 38 LLGLSEPDLRQLAVDLG----QQSYRGKQLHDLLYKSRAKQIQEFSHVPKVFREALVGAG 93 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-----SRGTLCVSSQV 122 + + + + DGT K LL+ + IETV IP SR T CVSSQV Sbjct: 94 WKVGRSPVHHAVTASDGTTKILLKLEDNRL-----IETVGIPVDDDKGPSRLTACVSSQV 148 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L CSFC TG RNL A EI+ QVL + + +++N+ Sbjct: 149 GCPLRCSFCATGKGGFARNLHAHEIVEQVL-----------------AIEETFQHRVTNV 191 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAI 241 V MGMGEP+ N +V ++ + L +R IT+ST G I ++ ++ LA+ Sbjct: 192 VFMGMGEPMLNLKSVLEAHRCLNKE--LKIGQRMITISTVGVPSTIKKLASHKLQSTLAV 249 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA + LR +VP + YPLE L+D C++Y L RR++FEY +L GIND+ A Sbjct: 250 SLHAPNQKLRETIVPSAKSYPLEALMDDCKNY-FLETGRRVSFEYTLLAGINDAKEHAEE 308 Query: 302 LIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L ++L G +NLIP+NP G EY +K + F + ++ + +R RGLD Sbjct: 309 LAELLHTCGGGYHVNLIPYNPIQGSEYKRPYRKVVQAFVDALEARKITVSVRQTRGLDAN 368 Query: 360 AACGQLKSLSKRIP 373 AACGQL++ ++ P Sbjct: 369 AACGQLRNEFQKNP 382 >gi|291518520|emb|CBK73741.1| 23S rRNA m(2)A-2503 methyltransferase [Butyrivibrio fibrisolvens 16/4] Length = 361 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 105/291 (36%), Positives = 163/291 (56%), Gaps = 25/291 (8%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKIS-CDGTRKWLL 90 + R Q+++W++ D+ M +I + ++ L + + + VD +IS DGTRK+L Sbjct: 30 KFRAKQLYEWMHQHLALDYDEMKNIPKSLKEKLVANCNYHPLKKVDLQISKIDGTRKYLF 89 Query: 91 RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150 G + +E+V++ K ++C+SSQVGC + C FC + VRNLT E+L Q Sbjct: 90 EL----YDGQM-VESVWMSYKHGNSVCISSQVGCKMGCRFCASTLDGWVRNLTPSEMLGQ 144 Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210 + + G ++SN+V+MG GEP+ N+DN+ K + + SD GL Sbjct: 145 IYAIQR-----------------DTGERVSNLVVMGTGEPMDNYDNIVKFVRLLSDENGL 187 Query: 211 SFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 + S+R IT+ST G VP I ++ EE + + LAISLHA + R L+P+ KY + LIDA Sbjct: 188 NISQRNITVSTCGIVPRIKQLAEEDLTITLAISLHAPNQQKRAELMPVANKYEIHELIDA 247 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 C +Y RRITFEY ++ G+ND DA L +++ + +NLIP NP Sbjct: 248 CEYYFN-KTGRRITFEYSLVGGVNDRDEDAAELGQLIGHLNCHVNLIPVNP 297 >gi|254527128|ref|ZP_05139180.1| radical SAM enzyme, Cfr family [Prochlorococcus marinus str. MIT 9202] gi|221538552|gb|EEE41005.1| radical SAM enzyme, Cfr family [Prochlorococcus marinus str. MIT 9202] Length = 348 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 125/373 (33%), Positives = 188/373 (50%), Gaps = 45/373 (12%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV-----R 61 ++L+G ++LE L+ G R QI WIY R+ + D + + + Sbjct: 2 KNLLGSSVKDLENVALEYG----QAAFRGRQIHNWIY--NYRNKKKSIDQIEVLPLDFRK 55 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L + F + + + ++ DGT K LL IE V IP + R T C+SSQ Sbjct: 56 KLKDDGFKLSELSVQERNLANDGTLKLLL-----SANDNESIECVGIPTEKRLTACLSSQ 110 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC + C FC TG + L R+L A EIL Q+L + + RK++N Sbjct: 111 VGCPMDCKFCATGKEGLKRSLKASEILDQILF-----------------IENEMNRKVTN 153 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI-----ARVGEEIG 236 IV MGMGEPL N D++ +SI S + S+R+IT+ST VP + A+ + +G Sbjct: 154 IVFMGMGEPLLNIDDL--LVSIRSINKDFQISQRKITVSTVA-VPKMINKLSAKSFQILG 210 Query: 237 ---VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 LAISLHA + +R ++P + Y +E +I+ C+ Y RR++FEY+ML G+N Sbjct: 211 NCQFTLAISLHASNQKIRETIIPSAKNYEIENIIEDCKQYVR-DTGRRVSFEYLMLSGVN 269 Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353 D A L +LKG +NLI +N E+ + K + +F + +G + +R Sbjct: 270 DKLEHANELSNLLKGFQCHVNLIQYNQIDEVEFQRTSLKSLQSFQSKLSHNGIAVSLRKS 329 Query: 354 RGLDILAACGQLK 366 RGLD AACGQL+ Sbjct: 330 RGLDKNAACGQLR 342 >gi|168043878|ref|XP_001774410.1| predicted protein [Physcomitrella patens subsp. patens] gi|162674262|gb|EDQ60773.1| predicted protein [Physcomitrella patens subsp. patens] Length = 372 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 133/383 (34%), Positives = 190/383 (49%), Gaps = 54/383 (14%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 E L+ L +IG+ HV IW + + + + ++ + F + + Sbjct: 14 EVLKWELERIGVKALHVFT----IWTHVLAHPDTEAHDVPGLPFAAIDMIKEKFKTLTSQ 69 Query: 75 IVDEKISCDGTRKWLL--------------RFPA---RCIGGPVEIETVYIPEKSRGTLC 117 + D++ S DGT LL R A + GGP + SR TLC Sbjct: 70 VKDQETSADGTTTKLLIQLQGGQSVEAVIMRHDAGAGKYAGGPRQ-------GGSRATLC 122 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 VSSQVGC + C+FC TGT L NL+A EI+ Q++ A V P Sbjct: 123 VSSQVGCQMGCTFCATGTMGLKGNLSAGEIVEQLVHASQ--------------VTP---- 164 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDS-MGLSFSKRRITLSTSGFVPNIARVGEEI- 235 I NIV MGMGEPL N+ +V + + I + GLS S IT+ST G +P I + ++ Sbjct: 165 -IRNIVFMGMGEPLNNYKSVVEGIQIMTGRCFGLSPS--HITVSTVGVIPRILSIANDLP 221 Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 GV LA+SLHA + +LR +VP + YPL L+ A Y +S RR+ EYVML GINDS Sbjct: 222 GVNLALSLHAPTQELRCQIVPTAKAYPLHKLMAALNSYQTISR-RRVLVEYVMLAGINDS 280 Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPR 354 A L +LK +NLIP+NP +Y + Q+D+ F + ++ G + IR Sbjct: 281 DEVAHQLGTLLKDHNVTLNLIPYNPATSSDYKPTSQEDLTRFQKILRGVHGVRTTIRQEM 340 Query: 355 GLDILAACGQLKSLSKRIPKVPR 377 G DI ACGQL +S+ + + P+ Sbjct: 341 GQDIAGACGQL-VISQSVKQSPK 362 >gi|126697010|ref|YP_001091896.1| putative Fe-S-cluster redox protein [Prochlorococcus marinus str. MIT 9301] gi|205829802|sp|A3PEX0|RLMN_PROM0 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|126544053|gb|ABO18295.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus str. MIT 9301] Length = 347 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 124/372 (33%), Positives = 186/372 (50%), Gaps = 43/372 (11%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV-----R 61 ++L+G ++LE L G R QI+ WIY R+ + D + + + Sbjct: 2 KNLLGSTIKDLENVALDYG----QAGFRGRQIYNWIY--NYRNKKKNIDQIEVLPLDFRK 55 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L + F + I + ++ DGT K LL IE V IP + R T C+SSQ Sbjct: 56 RLKDDGFKVSDLSIHERNLANDGTLKLLLSTE-----DNESIECVGIPTEKRLTACLSSQ 110 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC + C FC TG + L R+L EIL Q+L + + RK++N Sbjct: 111 VGCPMDCKFCATGKEGLKRSLKVSEILDQILFIEN-----------------EMNRKVTN 153 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE------- 234 IV MGMGEPL N D++ LSI S + L S+R+IT+ST I ++ + Sbjct: 154 IVFMGMGEPLLNIDDL--LLSIRSINEDLKISQRKITVSTVAVPKMINKLSAKSFKILGN 211 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 LA+SLHA + +R ++P + Y +E +I+ C+ Y RR++FEY+ML+G+ND Sbjct: 212 CQFTLAVSLHAPNQKIRETIIPSAKNYEIENIIEDCKQYVR-DTGRRVSFEYLMLRGVND 270 Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 A L +LKG +NLI +N E+ + KD+ +F + +G + +R R Sbjct: 271 KIEHANELSHLLKGFQCHVNLIQYNQIDEVEFQRACLKDLQSFQSRLSHNGIAVSLRKSR 330 Query: 355 GLDILAACGQLK 366 GLD AACGQL+ Sbjct: 331 GLDKNAACGQLR 342 >gi|227495074|ref|ZP_03925390.1| possible Fe-S-cluster redox protein [Actinomyces coleocanis DSM 15436] gi|226831526|gb|EEH63909.1| possible Fe-S-cluster redox protein [Actinomyces coleocanis DSM 15436] Length = 403 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 126/363 (34%), Positives = 188/363 (51%), Gaps = 38/363 (10%) Query: 18 EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD 77 ++ L G+P R Q+ + + + D MSD+ +++++Q + P +V Sbjct: 57 KQVLKDAGLPA----FRADQLSRHYFGNYVADPAQMSDLP---KNMVDQVRDSLMPTLVK 109 Query: 78 --EKISCDG----TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131 + DG W L +R +E+V + R TLC+SSQ GC + C FC Sbjct: 110 PVRTLEADGGLTIKHLWELFDGSR-------VESVLMRYPQRTTLCISSQAGCGMACPFC 162 Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191 TG L RNL+ EI+ QV LA CED + P+ ++SNIV MGMGEPL Sbjct: 163 ATGQMGLTRNLSTAEIVEQVRLAAK------ACEDGDLEGGPT---RLSNIVFMGMGEPL 213 Query: 192 CNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG--VMLAISLHAVS 247 N+ + ++L I G S R IT+ST G VP I ++ ++G V LAISLHA Sbjct: 214 ANYKAIVETLDRLIKESPEGFGLSARNITVSTVGLVPAIDKLA-KLGHPVTLAISLHAPD 272 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 ++LR+ L+PIN ++ + L+DA R Y ++ RR++ EY +++ +ND A L L Sbjct: 273 DELRDELIPINSRWKVGELLDAARRY-FVATGRRVSIEYALIRDMNDHAWRAQLLADELN 331 Query: 308 GIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 A +N IP NP PG + S +K F E ++++G S+ IR RG DI ACGQ Sbjct: 332 KRGHGWAHVNPIPLNPTPGSIWTASTKKAQQEFVEILRKNGISTTIRDTRGSDIDGACGQ 391 Query: 365 LKS 367 L + Sbjct: 392 LAT 394 >gi|271963404|ref|YP_003337600.1| radical SAM protein [Streptosporangium roseum DSM 43021] gi|270506579|gb|ACZ84857.1| radical SAM protein [Streptosporangium roseum DSM 43021] Length = 374 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 117/344 (34%), Positives = 183/344 (53%), Gaps = 29/344 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE--KISCDG--TRKW 88 R Q+ + + + D + M+D+ R + + ++P+++ +++ D TRK Sbjct: 49 FRADQLSRHYFEKLNGDPELMTDLPATARE---KFAAALFPKLLTSVREMTTDAGTTRKT 105 Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 L R + +E+V + R T+CVSSQ GC + C FC TG L RN+T EI+ Sbjct: 106 LWRLFDGAL-----VESVLMRYTDRTTMCVSSQAGCGMNCPFCATGQAGLTRNMTTAEIV 160 Query: 149 LQVLL-ARSLL-GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IA 204 QV+ AR+L G+ PG ++SN+V MGMGEPL N+ V ++ + Sbjct: 161 EQVVAGARALAAGEVPGGPG-----------RVSNVVFMGMGEPLANYKAVIGAVRRMVE 209 Query: 205 SDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPL 263 GL S R +T+ST G VP I ++ E + V LA+SLHA ++LR+ LVPIN ++ + Sbjct: 210 PSPDGLGISARGVTVSTVGLVPAIGKLAAEGLPVTLALSLHAPDDELRDTLVPINTRWKV 269 Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPG 323 ++DA +Y + RR++ EY ++K IND A L K++K +NLIP NP PG Sbjct: 270 AEVLDAAWNY-AATTKRRVSIEYALIKDINDQEWRADLLGKLIKNKLVHVNLIPLNPTPG 328 Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 ++ S +D F ++ G +R RG +I ACGQL + Sbjct: 329 SKWTASRPEDERAFVRRLEFHGVPVTVRDTRGREIDGACGQLAA 372 >gi|255077056|ref|XP_002502181.1| predicted protein [Micromonas sp. RCC299] gi|226517446|gb|ACO63439.1| predicted protein [Micromonas sp. RCC299] Length = 395 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 137/380 (36%), Positives = 195/380 (51%), Gaps = 44/380 (11%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRD-FQGMSDISQEVRH-L 63 + +L+G+ +EL E + +PQ R QI IY + +GM + R L Sbjct: 39 QRTLLGLGLDELRELSAEFALPQ----WRGQQIHDAIYGEMRKTTIEGMQQLPLGFRQAL 94 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRG-----TLC 117 ++ + E V+ DGTRK L F RC G + IE V IP E+++G T+C Sbjct: 95 VDAGYETGRREPVEIVSDEDGTRKAL--FELRC--GSI-IEAVGIPVERAKGRRRRFTVC 149 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 VSSQVGC++ CSFC TG Q RNLT++EI+ QVL ED+ GR Sbjct: 150 VSSQVGCAMRCSFCATGRQGFRRNLTSDEIVNQVL----------SMEDV-------FGR 192 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEI 235 + +N+VMMGMGEPL N V ++ + +G+ R T+ST G VPN + Sbjct: 193 RATNVVMMGMGEPLLNLREVLRAHRCLNRDVGI--GGRYFTISTVG-VPNALSKLAAHRL 249 Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 LA+SLHA + +LR L+P + +PL+ L++ R Y + RR+TFEY +L G NDS Sbjct: 250 QATLAVSLHAPTQELRERLIPSAKAFPLDALLEEVRMYRK-ATGRRVTFEYTLLAGENDS 308 Query: 296 PRDALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI-KRSGYSSPIR 351 A L K+L+ G INL+P+NP G + + + F + + G S +R Sbjct: 309 EDHARALAKLLRSKVGRGCHINLLPWNPVAGANHQRPSKSAVNRFCDVLAAERGVSYSVR 368 Query: 352 TPRGLDILAACGQLKSLSKR 371 RGL AACGQL +R Sbjct: 369 ATRGLVAQAACGQLTGAFER 388 >gi|157414083|ref|YP_001484949.1| ribosomal RNA large subunit methyltransferase N [Prochlorococcus marinus str. MIT 9215] gi|205829804|sp|A8G6Y2|RLMN_PROM2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|157388658|gb|ABV51363.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus str. MIT 9215] Length = 348 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 124/373 (33%), Positives = 188/373 (50%), Gaps = 45/373 (12%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV-----R 61 ++L+G ++LE L+ G R QI WIY R+ + D + + + Sbjct: 2 KNLLGSSVKDLENVALEYG----QAAFRGRQIHNWIY--NYRNKKKSIDQIEALPLDFRK 55 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L + F + + + ++ DGT K LL IE V IP + R T C+SSQ Sbjct: 56 KLKDDGFKLSELSVQERNLANDGTLKLLL-----SANDNESIECVGIPTEKRLTACLSSQ 110 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC + C FC TG + L R+L A EIL Q+L + + RK++N Sbjct: 111 VGCPMDCKFCATGKEGLKRSLKASEILDQILF-----------------IENEMNRKVTN 153 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI-----ARVGEEIG 236 IV MGMGEPL N D++ +SI S + S+R+IT+ST VP + A+ + +G Sbjct: 154 IVFMGMGEPLLNIDDL--LVSIRSINKDFQISQRKITVSTVA-VPKMINKLSAKSFQILG 210 Query: 237 ---VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 LAISLHA + +R ++P + Y +E +I+ C+ Y RR++FEY+ML G+N Sbjct: 211 NCQFTLAISLHASNQKIRETIIPSAKNYEIENIIEDCKQYVR-DTGRRVSFEYLMLSGVN 269 Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353 D A L +L+G +NLI +N E+ + K + +F + +G + +R Sbjct: 270 DKLEHANELSNLLRGFQCHVNLIQYNQIDEVEFQRTSLKSLQSFQSRLSHNGIAVSLRKS 329 Query: 354 RGLDILAACGQLK 366 RGLD AACGQL+ Sbjct: 330 RGLDKNAACGQLR 342 >gi|330999065|ref|ZP_08322788.1| putative 23S rRNA m2A2503 methyltransferase [Parasutterella excrementihominis YIT 11859] gi|329575586|gb|EGG57120.1| putative 23S rRNA m2A2503 methyltransferase [Parasutterella excrementihominis YIT 11859] Length = 302 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 111/326 (34%), Positives = 167/326 (51%), Gaps = 31/326 (9%) Query: 53 MSDISQE--VRHLLNQHFSIIYPEIVDEKI-SCDGTRKWLLRFPARCIGGPVEIETVYIP 109 M I QE +R+ +N HF+ I +K+ T K++ IETV+I Sbjct: 1 MERIKQEPYIRNYINSHFTKKNLSISTKKVYKSSDTEKYVYELKDNRY-----IETVFIK 55 Query: 110 EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169 + GT+CVS+QVGC + C FC +G VRNLT EI+ QV+L R Sbjct: 56 RRDGGTVCVSTQVGCPVGCIFCESGRNGFVRNLTPSEIVQQVILIR-------------- 101 Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIA 229 +K++ IV MGMGEPL N+DN+ ++ I D GL+F IT+ST G V + Sbjct: 102 -------QKVNRIVFMGMGEPLFNYDNLIAAIHILRDRNGLNFPTDGITVSTVGPVKQLK 154 Query: 230 RVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVM 288 ++ EE + + L ISLHA + RN ++P KY +E ++ Y N R++ F Y++ Sbjct: 155 KLREEHLKIQLTISLHAATQAARNCIIPHMHKYAIEDVVKQALSYSQRHN-RKVVFAYLL 213 Query: 289 LKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSS 348 L GIND D L K KG IN++ +NP + ++++V F ++++G Sbjct: 214 LPGINDRSSDIRQLAKWFKGKNVMINVLQYNPTSNSKIRAPQKQEMVAFKHQLEQTGLEV 273 Query: 349 PIRTPRGLDILAACGQLKSLSKRIPK 374 +R G +I AACGQL + + K Sbjct: 274 TMRVSHGREIKAACGQLANTYNKAKK 299 >gi|300783906|ref|YP_003764197.1| ribosomal RNA large subunit methyltransferase N [Amycolatopsis mediterranei U32] gi|299793420|gb|ADJ43795.1| ribosomal RNA large subunit methyltransferase N [Amycolatopsis mediterranei U32] Length = 368 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 117/345 (33%), Positives = 180/345 (52%), Gaps = 28/345 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE--KISCD--GTRKW 88 R Q+ + R D + M+DI R L + + P ++ E ++ D TRK Sbjct: 40 FRAKQLSNHYFSRLTVDPEEMTDIPAASRQRL---VADLMPTLLTEVRALAADDGATRKT 96 Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 L R + +E+V + R TLC+SSQ GC + C FC TG L RNL+ EI+ Sbjct: 97 LWRAHDGTL-----LESVLMRYPDRATLCISSQAGCGMACPFCATGQGGLDRNLSTAEIV 151 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 QV A +++ D +P ++SNIV MGMGEPL N+ V ++ +D Sbjct: 152 DQVRSAAAVMRDG---------AMPGGPGRLSNIVFMGMGEPLANYKRVVAAVRRITDPA 202 Query: 209 --GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEM 265 GL +R +T+ST G P I ++ +E + V LA+SLH ++LR+ LVP+N ++ ++ Sbjct: 203 PGGLGIGQRSVTVSTVGLAPAIRKLADEKMQVRLAVSLHTPDDELRDTLVPVNERWSVDE 262 Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIPAKINLIPFNPWP 322 ++ A R+Y S RR++ EY +++ IND P A L K L+ G +N+IP NP P Sbjct: 263 VLSAARYYADTSG-RRVSIEYALIRDINDQPWRAELLAKRLRKHLGQLVHVNVIPLNPTP 321 Query: 323 GCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 G ++ S + F + G + +R RG +I AACGQL + Sbjct: 322 GSKWDASPKPVEREFVRLVNAGGVACTVRDTRGQEIAAACGQLAA 366 >gi|239918594|ref|YP_002958152.1| radical SAM enzyme, Cfr family [Micrococcus luteus NCTC 2665] gi|281415191|ref|ZP_06246933.1| ribosomal RNA large subunit methyltransferase N [Micrococcus luteus NCTC 2665] gi|239839801|gb|ACS31598.1| radical SAM enzyme, Cfr family [Micrococcus luteus NCTC 2665] Length = 465 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 120/368 (32%), Positives = 190/368 (51%), Gaps = 23/368 (6%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L + +E +E +IG+P R Q+ + D + M+D+ ++ R + + F Sbjct: 108 LADLTLKERQEKAKEIGLPA----FRAKQLSVHYFEHYTTDPEQMTDLPRDKREAIAEAF 163 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 +P ++ E + R ++F R G + +E+V + R TLCVSSQ GC + C Sbjct: 164 ---FPPLLTEVRRMETDRGDTIKFLWRLFDGAL-VESVLMRYPGRVTLCVSSQAGCGMNC 219 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISNIVMMG 186 FC TG L RN++ EI+ Q++LA ++ G G G +++N+V MG Sbjct: 220 PFCATGQAGLTRNMSTAEIVEQIVLANQVIAQGGLGGKRKDGG----HDADRVTNVVFMG 275 Query: 187 MGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MGEPL N+ V ++ D GL S R ITLST G VP I ++ EE + + A+SL Sbjct: 276 MGEPLANYKRVMAAVHRMVDPSPEGLGMSARNITLSTVGLVPAIRKLAEEGVPLTFALSL 335 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA ++LR+ L+P+N ++ + IDA Y ++ RR++ EY ++K +ND A L Sbjct: 336 HAPDDELRDELIPVNSRWKADEAIDAAYDY-FVATGRRVSIEYALIKDMNDHAWRADLLA 394 Query: 304 KIL----KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 K L KG +N IP NP PG + S++ F + + +G + +R RG +I Sbjct: 395 KKLNARGKGW-VHVNPIPLNPTPGSIWTASEKDVTREFVDRLNAAGIPTTLRDTRGKEID 453 Query: 360 AACGQLKS 367 ACGQL + Sbjct: 454 GACGQLAA 461 >gi|317506353|ref|ZP_07964165.1| cfr family radical SAM enzyme [Segniliparus rugosus ATCC BAA-974] gi|316255363|gb|EFV14621.1| cfr family radical SAM enzyme [Segniliparus rugosus ATCC BAA-974] Length = 369 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 127/362 (35%), Positives = 183/362 (50%), Gaps = 36/362 (9%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L + EEL EA+ +G R Q+ + Y R + M+DI R L Sbjct: 20 LADLAAEELREAVAGLG----EKPFRAQQLARHYYSRLTAEPGVMTDIPAASRGKLADAL 75 Query: 69 --SIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 S+I P + CDG T K L R + +E+V + R TLCVSSQ GC Sbjct: 76 LPSLITPA---RTMGCDGGETVKTLWRLHDGAL-----VESVLMGYADRVTLCVSSQAGC 127 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EI+ QV LA + D + R +SN+V Sbjct: 128 GMACPFCATGQGGLTRNLSTAEIVEQVRLAAAAARDGK---------VAGGPRNLSNVVF 178 Query: 185 MGMGEPLCNFDN----VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239 MGMGEPL N++ V++ S A D +GL S+R + +ST G VP I R+ GE + V L Sbjct: 179 MGMGEPLANYNRVLAAVRRITSPAPDGLGL--SQRSVVVSTVGLVPAIKRLAGEGLSVTL 236 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA ++LR+ LVP+N ++P+ ++ A + Y RR++ EY +++ +ND P A Sbjct: 237 AVSLHAPDDELRDTLVPVNTRWPVAEVLAAAQGY-ARQTGRRVSVEYALIREVNDQPWRA 295 Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L +L G A +NLIP NP PG ++ S + F ++ G S +R RG Sbjct: 296 DLLGGLLHQALGPLAHVNLIPLNPTPGSKWDASSPEAQREFVRRVRAKGVSCTVRDTRGQ 355 Query: 357 DI 358 +I Sbjct: 356 EI 357 >gi|303280559|ref|XP_003059572.1| predicted protein [Micromonas pusilla CCMP1545] gi|226459408|gb|EEH56704.1| predicted protein [Micromonas pusilla CCMP1545] Length = 406 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 124/357 (34%), Positives = 188/357 (52%), Gaps = 37/357 (10%) Query: 19 EALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ---HFSIIYPEI 75 +AL K+ R Q+ +Y + ++ I + R L H + P Sbjct: 62 DALTKLAKEHGQPGYRGKQLHDAVYSHRKEAIEAITQIPEAFRSSLRASGVHVGRVRP-- 119 Query: 76 VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135 +D + DGT+K LL+ RC G V IE V + R T+CVSSQVGC++ CSFC TG Sbjct: 120 IDVVAAPDGTKKVLLKL--RC--GSV-IEAVGETRRRRFTVCVSSQVGCAMRCSFCATGR 174 Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195 Q RNLT++EI+ QVL ED+ GR+ +N+VMMGMGEPL N Sbjct: 175 QGFKRNLTSDEIVNQVL----------ALEDV-------FGRRATNVVMMGMGEPLMNLK 217 Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNIL 254 V ++ + +G+ R T+ST G ++++ ++ LA+SLHA + +LR L Sbjct: 218 EVLRAHRCLNRDVGI--GGRYFTISTVGVPNQLSKLAAHKLQATLAVSLHAPTQELREKL 275 Query: 255 VPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIPA 311 +P + Y ++ L++ CR Y S +R+TFEY +L G NDSP A L ++L+ G + Sbjct: 276 IPSAKAYHVDDLLEDCRLYKK-STGKRLTFEYTLLAGENDSPEHARALGRLLRTRVGRGS 334 Query: 312 KINLIPFNPWPGCE--YLCSDQKDIVTFSECI-KRSGYSSPIRTPRGLDILAACGQL 365 +NL+P+NP G E + + + F++ + K G + +R RGL+ AACGQL Sbjct: 335 HVNLLPWNPVTGAEDAHARPSKTAVKRFADALAKERGVTFTVRRTRGLEADAACGQL 391 >gi|299143975|ref|ZP_07037055.1| radical SAM enzyme, Cfr family [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518460|gb|EFI42199.1| radical SAM enzyme, Cfr family [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 349 Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 103/285 (36%), Positives = 159/285 (55%), Gaps = 24/285 (8%) Query: 83 DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNL 142 D T+K+L + + I +E V + K + C+S+QVGC + C FC + + L+RNL Sbjct: 74 DETKKFLFKLEDKNI-----VEGVLMKYKHGYSQCISTQVGCRMGCVFCASTKEGLIRNL 128 Query: 143 TAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS 202 +A E+L QV V +SNI++MG GEP N+DNV + L Sbjct: 129 SAYEMLGQVY-----------------EVEKRFNINVSNIILMGSGEPFDNYDNVIRFLK 171 Query: 203 IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKY 261 + G + S R IT+ST G V I + +E + + LAISLH +N R+ ++PIN+KY Sbjct: 172 LVHSKEGKNLSYRNITISTCGIVDKIYELSKENLPITLAISLHNTNNISRDNIMPINKKY 231 Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPW 321 +E +I AC++Y ++N+ RITFEY ++ G ND+ +A L ++ G+ A INLIP NP Sbjct: 232 NIEQIIQACKNYSNMTNS-RITFEYTLIGGQNDTLENAQELKSLINGLKAHINLIPLNPI 290 Query: 322 PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +QK++ F + ++ + IR G DI+A+CGQL+ Sbjct: 291 KEYNKKRPNQKEVEDFKKKLEALKLNVTIRRELGADIMASCGQLR 335 >gi|124026587|ref|YP_001015702.1| putative Fe-S-cluster redox protein [Prochlorococcus marinus str. NATL1A] gi|205829803|sp|A2C4M8|RLMN_PROM1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123961655|gb|ABM76438.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus str. NATL1A] Length = 359 Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 113/343 (32%), Positives = 182/343 (53%), Gaps = 35/343 (10%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R QI +WIY RG + +S + ++ R L+ + I + ++ ++ D T K L+ Sbjct: 33 FRGRQIHEWIYQRGAKSLDSISVLPKKWRDSLVRKGIQIGRLDEINRVVAEDETLKLLMG 92 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 G + +ETV IP R T+CVSSQ+GC + C FC TG L R+L EI+ QV Sbjct: 93 ----TFDGEI-VETVGIPTDKRLTVCVSSQIGCPMGCKFCATGKGGLNRSLDVNEIVDQV 147 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 + R ++ R+ +++V MGMGEPL N NV S+ + +G+ Sbjct: 148 ISVRE-----------------TMNRRPTHVVFMGMGEPLLNIQNVLDSIECLTSDIGIG 190 Query: 212 FSKRRITLSTSGFVPN----IARVGEE----IGVMLAISLHAVSNDLRNILVPINRKYPL 263 +R+IT+ST G +PN +A++ ++ + LA+SLHA + LR +++P YP+ Sbjct: 191 --QRKITVSTVG-IPNTLSDLAKLAQDRLGRVQFTLAVSLHAPNQTLRELIIPSASSYPI 247 Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPG 323 L+ C+ Y L+ RR++FEY++L G+ND A L +++G + +NLI +NP Sbjct: 248 NSLLKDCKKYIDLT-GRRVSFEYILLGGLNDKDIHAEQLANLMRGFQSHVNLIAYNPIAE 306 Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + Q + F E ++ G + +R RG D AACGQL+ Sbjct: 307 ENFKRPSQSRVNAFRELLENRGVAVSVRASRGRDKDAACGQLR 349 >gi|38234081|ref|NP_939848.1| hypothetical protein DIP1502 [Corynebacterium diphtheriae NCTC 13129] gi|81564752|sp|Q6NGK9|RLMN_CORDI RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|38200343|emb|CAE50029.1| Conserved hypothetical protein [Corynebacterium diphtheriae] Length = 368 Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 120/375 (32%), Positives = 190/375 (50%), Gaps = 37/375 (9%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 F+ + + +E +AL ++G+P + R +QI + Y R D M+D+ R Sbjct: 18 FMPPKHFADLSADERIDALKELGLP----KFRANQIARHYYGRLEADPSTMTDLPAAARE 73 Query: 63 LLNQHFSIIYPEIVD--EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118 + ++P+++ + D T+K L + + +E+V + +R TLC+ Sbjct: 74 KVK---DALFPQLMQPVRAVQADDGETQKTLWKLHDGTL-----LESVLMRYPNRATLCI 125 Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 SSQ GC + C FC TG L RNL+ EI+ QV A + + + G + Sbjct: 126 SSQAGCGMACPFCATGQGGLDRNLSTGEIVDQVRAASA--------------TMQAEGGR 171 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVG-EEI 235 +SNIV MGMGEPL N+ V ++ A G S+R +T+ST G P I ++ E++ Sbjct: 172 LSNIVFMGMGEPLANYKRVVSAVRQITAPVPEGFGISQRNVTVSTVGLAPAIRKLADEDL 231 Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 V LA+SLH ++LRN LVP N ++ + ++DA R+Y S RR++ EY +++ +ND Sbjct: 232 SVTLAVSLHTPDDELRNTLVPTNNRWEVAEVLDAARYYADRS-GRRVSIEYALIRDVNDQ 290 Query: 296 PRDALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 A L K L G +NLIP NP PG ++ S F + + G + +R Sbjct: 291 GWRADMLGKKLHKALGPLVHVNLIPLNPTPGSKWDASPMDRQKEFVQRVIAQGVTCTVRD 350 Query: 353 PRGLDILAACGQLKS 367 RG +I AACGQL + Sbjct: 351 TRGQEIAAACGQLAA 365 >gi|289706145|ref|ZP_06502515.1| radical SAM enzyme, Cfr family [Micrococcus luteus SK58] gi|289557139|gb|EFD50460.1| radical SAM enzyme, Cfr family [Micrococcus luteus SK58] Length = 465 Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 120/368 (32%), Positives = 190/368 (51%), Gaps = 23/368 (6%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L + +E +E +IG+P R Q+ + D + M+D+ ++ R + + F Sbjct: 108 LADLTLKERQEKAKEIGLPA----FRAKQLSVHYFEHYTTDPEQMTDLPRDKREAIAEAF 163 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 +P ++ E + R ++F R G + +E+V + R TLCVSSQ GC + C Sbjct: 164 ---FPPLLTEVRRMETDRGDTVKFLWRLFDGAL-VESVLMRYPGRVTLCVSSQAGCGMNC 219 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISNIVMMG 186 FC TG L RN++ EI+ Q++LA ++ G G G +++N+V MG Sbjct: 220 PFCATGQAGLTRNMSTAEIVEQIVLANQVIAAGGLGGKRKDGG----HDADRVTNVVFMG 275 Query: 187 MGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MGEPL N+ V ++ D GL S R ITLST G VP I ++ EE + + A+SL Sbjct: 276 MGEPLANYKRVMAAVHRMVDPSPEGLGMSARNITLSTVGLVPAIRKLAEEGVPLTFALSL 335 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA ++LR+ L+P+N ++ + IDA Y ++ RR++ EY ++K +ND A L Sbjct: 336 HAPDDELRDELIPVNSRWKADEAIDAAYDY-FVATGRRVSIEYALIKDMNDHAWRADLLA 394 Query: 304 KIL----KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 K L KG +N IP NP PG + S++ F + + +G + +R RG +I Sbjct: 395 KKLNARGKGW-VHVNPIPLNPTPGSIWTASEKDVTREFVDRLNAAGIPTTLRDTRGKEID 453 Query: 360 AACGQLKS 367 ACGQL + Sbjct: 454 GACGQLAA 461 >gi|167768548|ref|ZP_02440601.1| hypothetical protein CLOSS21_03107 [Clostridium sp. SS2/1] gi|167710072|gb|EDS20651.1| hypothetical protein CLOSS21_03107 [Clostridium sp. SS2/1] Length = 250 Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 100/257 (38%), Positives = 151/257 (58%), Gaps = 19/257 (7%) Query: 111 KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 K ++C+SSQ GC + C FC + L RNLT E+L Q+ + D E Sbjct: 4 KHGNSVCISSQAGCRMGCKFCASTLGGLDRNLTPSEMLSQIYYIQ---------RDTE-- 52 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230 ++SN+VMMG GEP+ N+DNV + L + + GL+ S+R IT+ST G VP I Sbjct: 53 ------ERVSNVVMMGTGEPMDNYDNVLRFLELITSEDGLNISQRNITISTCGIVPKIKE 106 Query: 231 VGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 + ++ + + LAISLH+ ++++R L+PI KY ++ L+DAC +Y +N RR+TFEY ++ Sbjct: 107 LAQKHLQITLAISLHSPNDEMRRGLMPIAMKYSIDELLDACHYYFKETN-RRMTFEYSLV 165 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349 G+ND P A L LKG P +NLIP NP ++ S K ++ F + ++++ + Sbjct: 166 AGVNDQPVHAEELAGRLKGFPCHVNLIPVNPIKERDFKQSMPKSVMEFKKILEKNRVNVT 225 Query: 350 IRTPRGLDILAACGQLK 366 IR G DI AACGQL+ Sbjct: 226 IRREMGADINAACGQLR 242 >gi|119717461|ref|YP_924426.1| radical SAM protein [Nocardioides sp. JS614] gi|205829791|sp|A1SLQ4|RLMN_NOCSJ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|119538122|gb|ABL82739.1| 23S rRNA m(2)A-2503 methyltransferase [Nocardioides sp. JS614] Length = 376 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 120/354 (33%), Positives = 185/354 (52%), Gaps = 29/354 (8%) Query: 23 KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISC 82 ++G+P R Q+ + R + D M+D+ R L + + P ++ + Sbjct: 40 ELGLPG----FRAKQLSTHYFSRLVDDPDQMTDLPAGQRAEL---VAGLLPGLMTPLRTM 92 Query: 83 DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNL 142 + R + R G + +E+V + R T+CVSSQ GC + C FC TG L RN+ Sbjct: 93 EADRGTTRKTLWRLFDGAL-VESVLMRYPDRATMCVSSQAGCGMACPFCATGQGGLQRNM 151 Query: 143 TAEEILLQVLL-ARSLL-GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKS 200 + EI+ QV+ ARSL G+ PG ++SN+V MGMGEPL N+ V + Sbjct: 152 STAEIVEQVVAGARSLARGEVPGGPG-----------RVSNVVFMGMGEPLANYKAVLGA 200 Query: 201 LSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPI 257 + +D GL S R +T+ST G VP + ++ +E I V LA+SLHA ++LRN LVPI Sbjct: 201 VRRLTDPAPDGLGMSARGVTVSTVGLVPRMRQLADEGIPVTLALSLHAPDDELRNELVPI 260 Query: 258 NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP----AKI 313 N ++ + ++A +Y ++ RR++ EY M++GIND A L +L+G + Sbjct: 261 NTRFSVAETVEAAWNYAKVTK-RRVSIEYAMMRGINDQAWRADLLGDVLRGYGDWGWVHV 319 Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 NLIP NP PG ++ SD D F ++ + +R RG +I ACGQL + Sbjct: 320 NLIPLNPTPGSKWTASDPADEREFVRRLEAKAIPTTVRDTRGREIDGACGQLAA 373 >gi|317498697|ref|ZP_07956989.1| cfr family radical SAM enzyme [Lachnospiraceae bacterium 5_1_63FAA] gi|316894039|gb|EFV16229.1| cfr family radical SAM enzyme [Lachnospiraceae bacterium 5_1_63FAA] Length = 272 Score = 180 bits (456), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 100/257 (38%), Positives = 151/257 (58%), Gaps = 19/257 (7%) Query: 111 KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 K ++C+SSQ GC + C FC + L RNLT E+L Q+ + D E Sbjct: 4 KHGNSVCISSQAGCRMGCKFCASTLGGLDRNLTPSEMLSQIYYIQ---------RDTE-- 52 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230 ++SN+VMMG GEP+ N+DNV + L + + GL+ S+R IT+ST G VP I Sbjct: 53 ------ERVSNVVMMGTGEPMDNYDNVLRFLELITSEDGLNISQRNITISTCGIVPKIKE 106 Query: 231 VGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 + ++ + + LAISLH+ ++++R L+PI KY ++ L+DAC +Y +N RR+TFEY ++ Sbjct: 107 LAQKHLQITLAISLHSPNDEMRRGLMPIAMKYSIDELLDACHYYFKETN-RRMTFEYSLV 165 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349 G+ND P A L LKG P +NLIP NP ++ S K ++ F + ++++ + Sbjct: 166 AGVNDQPVHAEELAGRLKGFPCHVNLIPVNPIKERDFKQSMPKSVMEFKKILEKNRVNVT 225 Query: 350 IRTPRGLDILAACGQLK 366 IR G DI AACGQL+ Sbjct: 226 IRREMGADINAACGQLR 242 >gi|212723564|ref|NP_001132113.1| hypothetical protein LOC100193530 [Zea mays] gi|195654259|gb|ACG46597.1| hypothetical protein [Zea mays] Length = 410 Score = 180 bits (456), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 124/379 (32%), Positives = 188/379 (49%), Gaps = 41/379 (10%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LL 64 + +L+G+ +L + + +G R Q+ +Y + Q + + + R LL Sbjct: 45 RRALLGLSEPQLRQLAIDLG----QQSYRGKQLHDLLYKSRAKQIQEFNHVPKAFREALL 100 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP------EKSRGTLCV 118 +S+ + + DGT K LL+ + IETV IP SR T CV Sbjct: 101 GAGWSVGRSPVHHAVTASDGTTKILLKLEDNRL-----IETVGIPVDDDNKGSSRLTACV 155 Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 SSQVGC L CSFC TG RNL EI+ QVL + + + Sbjct: 156 SSQVGCPLRCSFCATGKGGFARNLQPHEIVEQVL-----------------AIEETFKHR 198 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV--GEEIG 236 ++N+V MGMGEP+ N +V ++ + L +R +T+ST G VPN ++ ++ Sbjct: 199 VTNVVFMGMGEPMMNLKSVLEAHQCFNKE--LKIGQRMMTISTVG-VPNTIKMLASHKLQ 255 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 LA+SLHA + LR +VP + YPL L+D C+ Y L RR++FEY +L GIND Sbjct: 256 STLAVSLHAPNQKLRETIVPSAKSYPLGALMDDCKSY-FLETGRRVSFEYTLLAGINDEK 314 Query: 297 RDALNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 A L ++L+ G +NLIP+NP G EY +K + F + ++ + +R R Sbjct: 315 EHAEELAELLRMCGGGYHVNLIPYNPIEGSEYKRPYRKVVQAFVDALEARKITVSVRRTR 374 Query: 355 GLDILAACGQLKSLSKRIP 373 GLD AACGQL++ ++ P Sbjct: 375 GLDANAACGQLRNEFQKNP 393 >gi|294786945|ref|ZP_06752199.1| radical SAM enzyme, Cfr family [Parascardovia denticolens F0305] gi|315226582|ref|ZP_07868370.1| cfr family radical SAM enzyme [Parascardovia denticolens DSM 10105] gi|294485778|gb|EFG33412.1| radical SAM enzyme, Cfr family [Parascardovia denticolens F0305] gi|315120714|gb|EFT83846.1| cfr family radical SAM enzyme [Parascardovia denticolens DSM 10105] Length = 404 Score = 180 bits (456), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 126/368 (34%), Positives = 189/368 (51%), Gaps = 31/368 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDI-SQEVRHLLNQH 67 L+ M +++ + + +G P R Q+ + + D SD S + + + Sbjct: 39 LVDMDQDQRVDLMKDLGYPS----FRLKQLGQHYFAHDDVDVASYSDFPSAKAQEVKEAF 94 Query: 68 FSIIYPEIVDEKISCDGTRK--WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + +++++ T K W L +R IE+V + SR TLC+SSQVGC Sbjct: 95 FPTLITPLLEQEADHGTTIKTLWKLFDGSR-------IESVLMKYPSRTTLCISSQVGCG 147 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG L RN++A EIL QV A + D E P+ ++SN+V M Sbjct: 148 MACPFCATGQLGLTRNMSAGEILEQVRYASAQARDGRLGE-------PT---RLSNVVFM 197 Query: 186 GMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAIS 242 GMGE L N+ + K++ A G S R IT+ST G VP I R+ GE I V LA+S Sbjct: 198 GMGEALGNYRAMMKAIRRISAMPPEGFGISARNITISTVGIVPGIRRLMGEGIPVRLAVS 257 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA ++LR+ LVP+N+++ ++DA Y L+ RR++ EY ++KGIND A L Sbjct: 258 LHAPDDELRDELVPMNKRFNTTQVLDAAHDYY-LATHRRVSIEYALMKGINDQAVHARLL 316 Query: 303 IKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 K L A +N IP NP G ++ S +D F + + +G ++ +R RG DI Sbjct: 317 AKRLNRYGDNWAHVNPIPLNPIEGSKWTASKPEDEARFLDILHEAGITATLRDTRGSDIN 376 Query: 360 AACGQLKS 367 ACGQL + Sbjct: 377 GACGQLAA 384 >gi|315604531|ref|ZP_07879594.1| cfr family radical SAM enzyme [Actinomyces sp. oral taxon 180 str. F0310] gi|315313543|gb|EFU61597.1| cfr family radical SAM enzyme [Actinomyces sp. oral taxon 180 str. F0310] Length = 422 Score = 180 bits (456), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 121/341 (35%), Positives = 177/341 (51%), Gaps = 20/341 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ + + D MSDI +R + + + P +V + +S + ++ Sbjct: 83 FRADQLSRHYFSHFEADPARMSDIPAGMREAVAE---ALLPHLVTKVVSLEADGGRTIKD 139 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 R G ++E+V + R TLCVSSQ GC + C FC TG L RNL+ EI+ QV Sbjct: 140 LWRLYDG-AQVESVLMRYPQRTTLCVSSQAGCGMACPFCATGQMGLTRNLSTAEIVDQVR 198 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGL 210 A++ C D P+ +SN+V MGMGEPL N+ V +L I G Sbjct: 199 AAQA------SCRDGALAGGPTT---LSNVVFMGMGEPLANYKTVVAALHRLIDPAPEGF 249 Query: 211 SFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 S R IT+ST G VP I ++ GE + V LA+SLHA +DLR+ L+PIN ++ + L+DA Sbjct: 250 GMSARNITVSTVGLVPAIKKLAGEGMPVTLAVSLHAPDDDLRDDLIPINSRWKVGELLDA 309 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--KGIP-AKINLIPFNPWPGCEY 326 R Y L+ RR++ EY ++K +ND A L L +G +N IP NP PG + Sbjct: 310 ARGY-FLATGRRVSIEYALIKDMNDQEWRAQLLADELNRRGHGWVHVNPIPLNPTPGSIW 368 Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 S ++ F ++ +G ++ IR RG DI ACGQL + Sbjct: 369 TASTRRAQHAFVSRLRDNGIATSIRDTRGSDIDGACGQLAT 409 >gi|159036879|ref|YP_001536132.1| radical SAM protein [Salinispora arenicola CNS-205] gi|205829873|sp|A8M6B6|RLMN_SALAI RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|157915714|gb|ABV97141.1| radical SAM enzyme, Cfr family [Salinispora arenicola CNS-205] Length = 380 Score = 180 bits (456), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 114/343 (33%), Positives = 176/343 (51%), Gaps = 25/343 (7%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEIVDEKISCD--GTRK 87 R R Q+ + R +RD M+D+ R L +++ P +++CD T K Sbjct: 44 RFRARQVSTHYFGRLVRDSGQMTDLPAAAREKLTDRLLPTLLTPV---RELTCDDGATHK 100 Query: 88 WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147 L R + +E+V + R T C+SSQ GC + C FC TG L RNL+ EI Sbjct: 101 ALWRLHDGSL-----VESVLMGYPDRVTACLSSQAGCGMACPFCATGQAGLTRNLSTAEI 155 Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IAS 205 + Q + + P ++S +V MGMGEPL N++ V ++ +A Sbjct: 156 VDQAVYLAGVA------ASGAVAGSPP---RLSRVVFMGMGEPLANYNRVVAAIRRLVAP 206 Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLE 264 GL S+R +T+ST G VP I R+ E++ V LA+SLHA + LR+ LVP+N+++ + Sbjct: 207 APEGLGLSQRHVTVSTVGLVPAIRRLASEDLSVTLALSLHAPDDGLRDELVPVNQRWKVS 266 Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGC 324 +++ Y RR++ EY M+K +ND P A L ++L G A +NLIP NP PG Sbjct: 267 EVLETAWEY-AARTGRRVSIEYAMIKDVNDQPWRADLLGRLLAGKLAHVNLIPLNPTPGS 325 Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 + S + F ++ +G S+ +R RG +I ACGQL + Sbjct: 326 RWDASPKPVEREFVRRLRDAGVSTTVRDTRGREIDGACGQLAA 368 >gi|72382850|ref|YP_292205.1| ribosomal RNA large subunit methyltransferase N [Prochlorococcus marinus str. NATL2A] gi|123746249|sp|Q46J26|RLMN_PROMT RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|72002700|gb|AAZ58502.1| 23S rRNA m(2)A-2503 methyltransferase [Prochlorococcus marinus str. NATL2A] Length = 359 Score = 179 bits (455), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 113/343 (32%), Positives = 182/343 (53%), Gaps = 35/343 (10%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R QI +WIY RG + +S + ++ R L+ + I + ++ ++ D T K L+ Sbjct: 33 FRGRQIHEWIYQRGAKSLDSISVLPKKWRDSLVRKGIQIGRLDEINRVVAEDETLKLLMG 92 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 G + +ETV IP R T+CVSSQ+GC + C FC TG L R+L EI+ QV Sbjct: 93 ----TFDGEI-VETVGIPTDKRLTVCVSSQIGCPMGCKFCATGKGGLNRSLDVNEIVDQV 147 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 + R ++ R+ +++V MGMGEPL N NV S+ + +G+ Sbjct: 148 ISVRE-----------------TMNRRPTHVVFMGMGEPLLNIRNVLDSIECLTSDIGIG 190 Query: 212 FSKRRITLSTSGFVPN----IARVGEE----IGVMLAISLHAVSNDLRNILVPINRKYPL 263 +R+IT+ST G +PN +A++ ++ + LA+SLHA + LR +++P YP+ Sbjct: 191 --QRKITVSTVG-IPNTLSDLAKLAQDRLGRVKFTLAVSLHAPNQTLRELIIPSASSYPI 247 Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPG 323 L+ C+ Y L+ RR++FEY++L G+ND A L +++G + +NLI +NP Sbjct: 248 NSLLKDCKKYIELT-GRRVSFEYILLGGLNDKDIHAEQLANLMRGFQSHVNLIAYNPIAE 306 Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + Q + F E ++ G + +R RG D AACGQL+ Sbjct: 307 ENFKRPSQSRVNAFRELLENRGVAVSVRASRGRDKDAACGQLR 349 >gi|219683780|ref|YP_002470163.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium animalis subsp. lactis AD011] gi|219621430|gb|ACL29587.1| radical SAM enzyme, Cfr family protein [Bifidobacterium animalis subsp. lactis AD011] Length = 393 Score = 179 bits (454), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 107/272 (39%), Positives = 157/272 (57%), Gaps = 16/272 (5%) Query: 102 EIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF 161 +IE+V + +R TLC+SSQVGC + C FC TG L RN++ EIL QV +A +++ Sbjct: 127 KIESVLMRYPNRTTLCISSQVGCGMGCPFCATGQLGLTRNMSTGEILEQVRIAAAMME-- 184 Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITL 219 G V GR +SN+V MGMGEP+ N+ + ++ A G S R IT+ Sbjct: 185 ------RGEVAGGPGR-LSNVVFMGMGEPMGNYRAIVSAVRQISAMPPEGFGISARNITV 237 Query: 220 STSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN 278 ST G VP I R+ +E + V LA+SLHA +N LR+ LVP+NR++ ++ ++DA Y L++ Sbjct: 238 STVGVVPGIRRLAQEGMPVRLAVSLHAPNNALRDELVPMNRRFNVDEVLDAAHDYY-LAS 296 Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIV 335 RR++ EY +++GIND A L L A +N IP NP G ++ S +D Sbjct: 297 KRRVSIEYALMRGINDQEIHARQLANRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDER 356 Query: 336 TFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 F E + +G ++ +R RG DI ACGQL + Sbjct: 357 RFLEILHNAGITATLRDTRGQDIDGACGQLAA 388 >gi|183601687|ref|ZP_02963057.1| hypothetical protein BIFLAC_03507 [Bifidobacterium animalis subsp. lactis HN019] gi|241190814|ref|YP_002968208.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196220|ref|YP_002969775.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219293|gb|EDT89934.1| hypothetical protein BIFLAC_03507 [Bifidobacterium animalis subsp. lactis HN019] gi|240249206|gb|ACS46146.1| hypothetical protein Balac_0778 [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250774|gb|ACS47713.1| hypothetical protein Balat_0778 [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793803|gb|ADG33338.1| hypothetical protein BalV_0750 [Bifidobacterium animalis subsp. lactis V9] Length = 398 Score = 179 bits (454), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 107/272 (39%), Positives = 157/272 (57%), Gaps = 16/272 (5%) Query: 102 EIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF 161 +IE+V + +R TLC+SSQVGC + C FC TG L RN++ EIL QV +A +++ Sbjct: 132 KIESVLMRYPNRTTLCISSQVGCGMGCPFCATGQLGLTRNMSTGEILEQVRIAAAMME-- 189 Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITL 219 G V GR +SN+V MGMGEP+ N+ + ++ A G S R IT+ Sbjct: 190 ------RGEVAGGPGR-LSNVVFMGMGEPMGNYRAIVSAVRQISAMPPEGFGISARNITV 242 Query: 220 STSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN 278 ST G VP I R+ +E + V LA+SLHA +N LR+ LVP+NR++ ++ ++DA Y L++ Sbjct: 243 STVGVVPGIRRLAQEGMPVRLAVSLHAPNNALRDELVPMNRRFNVDEVLDAAHDYY-LAS 301 Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIV 335 RR++ EY +++GIND A L L A +N IP NP G ++ S +D Sbjct: 302 KRRVSIEYALMRGINDQEIHARQLANRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDER 361 Query: 336 TFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 F E + +G ++ +R RG DI ACGQL + Sbjct: 362 RFLEILHNAGITATLRDTRGQDIDGACGQLAA 393 >gi|295396359|ref|ZP_06806525.1| cfr family radical SAM enzyme [Brevibacterium mcbrellneri ATCC 49030] gi|294970799|gb|EFG46708.1| cfr family radical SAM enzyme [Brevibacterium mcbrellneri ATCC 49030] Length = 441 Score = 179 bits (454), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 123/402 (30%), Positives = 185/402 (46%), Gaps = 50/402 (12%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + L + EEL +A+ G+P R Q+ YV D M+D+ + R L Sbjct: 45 QHLADLSLEELTQAVKDKGLPG----FRAKQLATHYYVHNTTDPADMTDLPADQREELAA 100 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 F +P ++ E ++F R G + +E+V + ++R TLCVSSQ GC + Sbjct: 101 EF---FPPLLTEVRRLRTEDGDTIKFLWRLFDGAM-VESVLMRYRNRITLCVSSQCGCGM 156 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLG--------------------------- 159 C FC TG Q L RN++ EI+ QV+ A ++ Sbjct: 157 NCPFCATGQQGLTRNMSTAEIVDQVIQANRVIAAGELAPTAGATTNYLGEEAAEVGSEAD 216 Query: 160 --------DFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMG 209 G + V +++N+V MGMGEPL N+ V ++ G Sbjct: 217 ASDNSATLQAAGTPETSATTSAGVHDRVTNVVFMGMGEPLANYKRVMNAVRRFTTPAPAG 276 Query: 210 LSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 L S RRIT+ST G VP I ++ E I V A+SLHA +DLR+ ++P+N ++ + ID Sbjct: 277 LGMSPRRITVSTVGLVPGIKKLAAENIPVTFALSLHAPDDDLRDEMIPVNTRWNADEAID 336 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNPWPGCE 325 A Y + RR++ EY ++K +ND A L K L +N IP NP PG Sbjct: 337 AAYDY-YKTTGRRVSIEYALIKDMNDHAWRAELLAKKLNARGRGWVHVNPIPLNPTPGSV 395 Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 + S+ + F + ++G + IR RG DI ACGQL + Sbjct: 396 WTASEPEVAAEFVRRLVKAGVPTTIRDTRGKDIDGACGQLAA 437 >gi|108803293|ref|YP_643230.1| hypothetical protein Rxyl_0444 [Rubrobacter xylanophilus DSM 9941] gi|122976140|sp|Q1AYW0|RLMN_RUBXD RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|108764536|gb|ABG03418.1| conserved hypothetical protein [Rubrobacter xylanophilus DSM 9941] Length = 355 Score = 179 bits (454), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 107/292 (36%), Positives = 154/292 (52%), Gaps = 24/292 (8%) Query: 83 DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNL 142 DGTRK+L IETV IPE+SR T+C+S+QVGC + C+FC TG + RNL Sbjct: 84 DGTRKYLF-----FTRDGHAIETVMIPERSRRTVCISTQVGCPMACTFCATGLLGIKRNL 138 Query: 143 TAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS 202 A EI QV F DI +++N+V+MGMGEP N+ ++L Sbjct: 139 KAREIAEQV---------FAVARDI-------APERVTNVVVMGMGEPFLNYRETLRALR 182 Query: 203 IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKY 261 + +D G + + R I +STSG V I R +E LAISLH + R L+P+ ++ Sbjct: 183 VLNDRRGFNLAARHIAVSTSGLVDKIRRFADEPEQFHLAISLHTPFEEERRRLMPVAARH 242 Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPW 321 P+ L++A R+Y + R++ FEY +L G+ND R A L ++L +NL+ FN W Sbjct: 243 PIPELMNAARYYVERTR-RKLFFEYTLLAGVNDRMRHAEALAELLDHPLYHLNLLRFN-W 300 Query: 322 PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIP 373 + + + F + G S+ +R RG DI AACGQL + R P Sbjct: 301 TDTGFSATSARRAKEFLRRARELGLSATLRPSRGQDIEAACGQLAARDARSP 352 >gi|284032622|ref|YP_003382553.1| radical SAM enzyme, Cfr family [Kribbella flavida DSM 17836] gi|283811915|gb|ADB33754.1| radical SAM enzyme, Cfr family [Kribbella flavida DSM 17836] Length = 372 Score = 179 bits (454), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 125/372 (33%), Positives = 187/372 (50%), Gaps = 37/372 (9%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQH 67 L + EE A+ +G P R Q+ + R + D M+D+ R L+ + Sbjct: 22 LADLSGEERRAAVTALGEPA----FRAKQLSNHYFSRLVSDPAEMTDLPAASRDKLVAEL 77 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 + ++ D + TRK L + + G + +E+V + R T+CVSSQ GC + Sbjct: 78 MPPLLTKVRDLECDNGQTRKSLWKL----LDGSL-VESVLMRYTDRTTMCVSSQAGCGMA 132 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVL-----LARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 C FC TG L RN+T EI+ QV+ L+R + PG +++NI Sbjct: 133 CPFCATGQAGLTRNMTTAEIVEQVVDGARALSRGEIAGGPG--------------RVNNI 178 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239 V MGMGEP+ N+ V ++ +D GL S R IT+ST G VP I ++ GE I V L Sbjct: 179 VFMGMGEPMANYKAVIGAVRRFTDPSPEGLGISARGITVSTVGLVPRINQLAGEGIPVTL 238 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA ++LR+ LVPIN ++ ++ ++DA Y RR++ EY M++ IND A Sbjct: 239 ALSLHAPDDELRDELVPINNRWKVDEVLDAAWGY-AQQTKRRVSIEYAMIRDINDHAWRA 297 Query: 300 LNLIKILKGIP----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 L + L +NLIP NP PG ++ SD D F ++ G + +R RG Sbjct: 298 DLLAEKLAARGDWGWVHVNLIPLNPTPGSKWTASDPADEREFVRRLQAGGIPTTVRDTRG 357 Query: 356 LDILAACGQLKS 367 +I ACGQL + Sbjct: 358 QEIDGACGQLAA 369 >gi|195953765|ref|YP_002122055.1| radical SAM enzyme, Cfr family [Hydrogenobaculum sp. Y04AAS1] gi|195933377|gb|ACG58077.1| radical SAM enzyme, Cfr family [Hydrogenobaculum sp. Y04AAS1] Length = 340 Score = 179 bits (453), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 119/339 (35%), Positives = 179/339 (52%), Gaps = 34/339 (10%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 + R SQI W + + I D + M+DI + +R L F ++ +D + + + K++ + Sbjct: 19 KYRISQIKSWAFKKKITDIELMTDIPKSLRQELKIDFHVLS---LDSFLEGEDSTKFVFK 75 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 +E+V I EK TLC+S+Q+GC++ C FC + L+RNL+ EI+ Q Sbjct: 76 -----TKDGYFVESVLIKEKDHYTLCISTQIGCAVGCKFCVSTIGGLLRNLSFSEIVDQY 130 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 L F I NIV MGMGEPL NF+N+KK+ I L Sbjct: 131 FYISILRNTF-----------------IRNIVFMGMGEPLANFENLKKASFIFLKEFEL- 172 Query: 212 FSKRRITLSTSGFVPNIARVGEEI---GVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 SKR IT+STS + I ++ E+ + LAISL+A ++ R L+P N L+ L + Sbjct: 173 -SKRHITISTSAYTNYIKKLKEDSFLNKLNLAISLNASDDETRKALMP-NVIGSLKELFE 230 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI--PAKINLIPFNPWPGCEY 326 + YP L RRIT EYV++K IN S +DA NL+ +LK + K+NLIP+N P + Sbjct: 231 ILKTYP-LEPRRRITIEYVLIKDINSSLKDAKNLVNLLKNLKHKTKVNLIPYNENPMLSF 289 Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + DI F + + ++ S IR +GL++ AACG L Sbjct: 290 ERPVESDIYRFQQELLKNDISCTIRWSKGLELAAACGHL 328 >gi|330837064|ref|YP_004411705.1| radical SAM enzyme, Cfr family [Spirochaeta coccoides DSM 17374] gi|329748967|gb|AEC02323.1| radical SAM enzyme, Cfr family [Spirochaeta coccoides DSM 17374] Length = 359 Score = 179 bits (453), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 124/353 (35%), Positives = 176/353 (49%), Gaps = 28/353 (7%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF-SIIYPEIVDEKISCDGTRKWLLR 91 R QI W+ RG F GMS++S R L + + I+ E+++EK G K +R Sbjct: 32 FRARQIRSWL-ARGTTSFTGMSNLSLLERTRLTEKYPHILTSEVIEEKTDRTGATKLGIR 90 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 G V + + + R T C+S QVGC++ C FC TGT L RNL A EI+ Q Sbjct: 91 L----YDGLVVECVLLVDQDGRKTACLSCQVGCAMGCVFCRTGTMGLARNLHAYEIVEQF 146 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 + + PS +IV MGMGEPL N V S+ + Sbjct: 147 V-------------HLMKYGTPS------HIVYMGMGEPLANTKEVFSSVLTLNSPDWFD 187 Query: 212 FSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 RRIT+ST G VP I ++ E +GV LAISL A + LR L+P+NR +PL L + Sbjct: 188 IGIRRITISTCGIVPGILQLAESGLGVKLAISLVAADDQLRTRLMPVNRSFPLIRLKETL 247 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 Y +RITFEY ML G+N A NL +KG+ A +NLIP+NP P + Sbjct: 248 VTYQK-KEKKRITFEYCMLGGVNTDETAARNLAHFMKGLEAIVNLIPWNPAPDLPWQTPS 306 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQIT 383 +++ +F ++R G R RG + ACGQL ++ + + +P ++ Q T Sbjct: 307 NREMDSFVSTLQRLGVPCTRRFSRGRGVDGACGQL-AVPQNMRTLPPEDTQGT 358 >gi|123966894|ref|YP_001011975.1| putative Fe-S-cluster redox protein [Prochlorococcus marinus str. MIT 9515] gi|205829807|sp|A2BYK7|RLMN_PROM5 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123201260|gb|ABM72868.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus str. MIT 9515] Length = 348 Score = 179 bits (453), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 126/380 (33%), Positives = 187/380 (49%), Gaps = 51/380 (13%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV------ 60 ++L+G ++LE L G R QI+ W+Y +++ S E+ Sbjct: 2 KNLLGCSVKDLENVALNYG----QAAFRGRQIYSWLY-----NYKNRSKSIDEINVLPLN 52 Query: 61 -RHLLNQHFSIIYPEIVDEK-ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118 R+ L + I I+ EK ++ DGT K LL +E V IP + R T C+ Sbjct: 53 FRNQLKKEGFIFGELILKEKYLANDGTLKLLLN-----TRDNESVECVGIPTEKRLTACL 107 Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 SSQVGC + C FC TG + L R+L A EIL Q+L + + +K Sbjct: 108 SSQVGCPMDCKFCATGKEGLKRSLKASEILDQILFIEN-----------------EMNQK 150 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238 ++NIV MGMGEPL N D + SI S + S+RRIT+ST +PN+ R E+ Sbjct: 151 VTNIVFMGMGEPLLNIDEL--LFSIRSINEDFDVSQRRITVSTVA-IPNMIRKLSEMSFQ 207 Query: 239 --------LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 LAISLHA + R ++P + Y ++ +ID CR + + RR++FEY+ML Sbjct: 208 VLGKCQFTLAISLHASNQKTRETIIPSAKNYHIKYIIDDCREFVKKT-GRRVSFEYLMLH 266 Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI 350 G+ND A L ++KG +NLI +N E+ + K+ F + +G + + Sbjct: 267 GVNDKLEHADELSNLIKGFQCHVNLIQYNQIEEVEFKQTPSKNAQLFQNRLSNNGINVSL 326 Query: 351 RTPRGLDILAACGQLKSLSK 370 R RG D AACGQL+ +K Sbjct: 327 RKSRGSDRNAACGQLRQNAK 346 >gi|283457572|ref|YP_003362155.1| putative Fe-S-cluster redox enzyme [Rothia mucilaginosa DY-18] gi|283133570|dbj|BAI64335.1| predicted Fe-S-cluster redox enzyme [Rothia mucilaginosa DY-18] Length = 419 Score = 179 bits (453), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 117/342 (34%), Positives = 179/342 (52%), Gaps = 13/342 (3%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R SQ+ K + R + D M+D+ + R Q + P+++ + + L+ Sbjct: 81 FRASQLSKHYFERLVTDPAEMTDLPAKDRE---QMVAQAMPQLLTPVRTLEADGGDTLKV 137 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 R G + IE+V + +R T+C+SSQ GC + C FC TG Q L RNL+ EI+ QV+ Sbjct: 138 VHRLFDGAL-IESVIMRYDNRVTMCISSQAGCGMNCPFCATGQQGLTRNLSTAEIVEQVV 196 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGL 210 L G E+ EG + ++SNIV MGMGE L N+ ++ I GL Sbjct: 197 AGARYLKQMKGLEEAEGGSEDTRPLRVSNIVFMGMGEALANYKATMGAVHRLIDPSPEGL 256 Query: 211 SFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 S R +T+ST G VP I + E++ + LA+SLHA ++LR+ L+PIN+++ ++ +DA Sbjct: 257 GISARGLTMSTVGLVPGIRKFELEKLPITLALSLHAPDDELRDELIPINQRWKVDETLDA 316 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL----KGIPAKINLIPFNPWPGCE 325 Y + RR++ EY +++ IND A L K L +G +N IP NP PG + Sbjct: 317 AYDY-YRTTGRRVSIEYALIRDINDQGWRADLLGKKLAQRGRGW-VHVNPIPLNPTPGSK 374 Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 + S + F E ++ G + IR RG DI ACGQL + Sbjct: 375 WTASRKGVEQNFVERLRAHGIPTTIRDTRGSDIDGACGQLAA 416 >gi|160947211|ref|ZP_02094378.1| hypothetical protein PEPMIC_01144 [Parvimonas micra ATCC 33270] gi|158446345|gb|EDP23340.1| hypothetical protein PEPMIC_01144 [Parvimonas micra ATCC 33270] Length = 348 Score = 179 bits (453), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 115/358 (32%), Positives = 191/358 (53%), Gaps = 37/358 (10%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ----HFSI 70 EELE+ L +G + R Q +++++ + + + + + + L + + S Sbjct: 14 EELEDLFLSLG----EKKFRAEQFFRFMHQKKNFEIENCKQLPKVLIEKLKEIGYINTSS 69 Query: 71 IYPEIVDEKISCDGTRKWLLR-FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129 IY + + D T+K+L++ F R I ETV++ S T+C+SSQVGC + C+ Sbjct: 70 IYTKYESK---LDNTKKYLIKLFDNRII------ETVFMDYGSYCTVCISSQVGCRMGCT 120 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 FC + + RNLT+ E+L Q+ L + + I+N+V+MG+GE Sbjct: 121 FCASTKENFKRNLTSGEMLNQIYLIEN-----------------DLNLTINNVVIMGIGE 163 Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248 PL N++NV L I + G + S R IT+ST G V NI ++ +E + + L ISLH Sbjct: 164 PLDNYNNVIGFLKIINSEKGKNLSLRNITISTCGLVHNIYKLADEKLPITLTISLHNPFQ 223 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 R ++PI+ + ++ ++ AC++Y + +RR++FEY ++KG NDS AL L ILKG Sbjct: 224 KERREIMPISDNFSIDEILKACKYYFDKT-SRRVSFEYTIIKGQNDSREHALELKNILKG 282 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + IN+IP N + + K I +F ++ G ++ IR +G DI ACGQL+ Sbjct: 283 LNCHINIIPLNSIKEFDGVAPSTKYIYSFKSMLENYGINATIRKKQGDDINGACGQLR 340 >gi|257068200|ref|YP_003154455.1| ribosomal RNA large subunit methyltransferase N [Brachybacterium faecium DSM 4810] gi|256559018|gb|ACU84865.1| radical SAM enzyme, Cfr family [Brachybacterium faecium DSM 4810] Length = 429 Score = 179 bits (453), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 123/359 (34%), Positives = 189/359 (52%), Gaps = 33/359 (9%) Query: 20 ALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR-HLLNQHFSIIYPEIVDE 78 A+ ++G+P R Q+ + + ++D+ ++ R L+ + F + ++ + Sbjct: 66 AVEEMGLPG----FRAKQLSVHYFEHFTTAAEDLTDLPRDRRDELVERFFPPLLTQVSRQ 121 Query: 79 KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKL 138 T+K+L + GP+ +E+V + R TLC+SS+ GC + C FC TG L Sbjct: 122 SADHGATQKFLWQL----FDGPM-VESVLMRYSDRNTLCISSEAGCGMNCPFCATGQMGL 176 Query: 139 VRNLTAEEILLQVLLARSLLG--DFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196 RNL+A EIL QV +A +L + PG GR ++NIV MGMGEPL N+ Sbjct: 177 TRNLSAAEILEQVRIANRMLAREELPG----------GPGR-VNNIVFMGMGEPLANYRP 225 Query: 197 VK---KSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRN 252 V K L+ A G R IT+ST G P + ++ E+I V LA+SLHA + LR+ Sbjct: 226 VATVCKRLN-APAPEGFGMGARHITVSTVGLAPAVRKLTAEKIPVTLAVSLHAPDDALRD 284 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK--ILKGIP 310 LVPIN ++ ++ ++DA Y + RR++ EY +++ IND A L + I KG Sbjct: 285 ELVPINTRFDVDEILDAAWEY-FEATGRRVSIEYALIRDINDQQHRAQLLAERLIAKGGA 343 Query: 311 --AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 +N IP NP G ++ SD + TF E ++ +G S+ IR RG DI ACGQL + Sbjct: 344 HWVHVNPIPLNPVKGSKWTASDPQVEKTFVETLRDNGISATIRDTRGSDIDGACGQLAA 402 >gi|255326866|ref|ZP_05367942.1| radical SAM enzyme, Cfr family [Rothia mucilaginosa ATCC 25296] gi|255296083|gb|EET75424.1| radical SAM enzyme, Cfr family [Rothia mucilaginosa ATCC 25296] Length = 404 Score = 179 bits (453), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 117/342 (34%), Positives = 179/342 (52%), Gaps = 13/342 (3%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R SQ+ K + R + D M+D+ + R Q + P+++ + + L+ Sbjct: 66 FRASQLSKHYFERLVTDPAEMTDLPAKDRE---QMVAQAMPQLLTPVRTLEADGGDTLKV 122 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 R G + IE+V + +R T+C+SSQ GC + C FC TG Q L RNL+ EI+ QV+ Sbjct: 123 VHRLFDGAL-IESVIMRYDNRVTMCISSQAGCGMNCPFCATGQQGLTRNLSTAEIVEQVV 181 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGL 210 L G E+ EG + ++SNIV MGMGE L N+ ++ I GL Sbjct: 182 AGARYLKQMKGLEEAEGGSEDTRPLRVSNIVFMGMGEALANYKATMGAVHRLIDPSPEGL 241 Query: 211 SFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 S R +T+ST G VP I + E++ + LA+SLHA ++LR+ L+PIN+++ ++ +DA Sbjct: 242 GISARGLTMSTVGLVPGIRKFELEKLPITLALSLHAPDDELRDELIPINQRWKVDETLDA 301 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL----KGIPAKINLIPFNPWPGCE 325 Y + RR++ EY +++ IND A L K L +G +N IP NP PG + Sbjct: 302 AYDY-YRTTGRRVSIEYALIRDINDQGWRADLLGKKLAQRGRGW-VHVNPIPLNPTPGSK 359 Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 + S + F E ++ G + IR RG DI ACGQL + Sbjct: 360 WTASRKGVEQNFVERLRAHGIPTTIRDTRGSDIDGACGQLAA 401 >gi|152965388|ref|YP_001361172.1| ribosomal RNA large subunit methyltransferase N [Kineococcus radiotolerans SRS30216] gi|205829778|sp|A6W7W9|RLMN_KINRD RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|151359905|gb|ABS02908.1| radical SAM enzyme, Cfr family [Kineococcus radiotolerans SRS30216] Length = 391 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 107/282 (37%), Positives = 155/282 (54%), Gaps = 22/282 (7%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLA-RSLLGDF 161 +E+V + K+R T+C+SSQ GC + C FC TG L RNL+ EI+ QV A R+L D Sbjct: 123 VESVLMRYKNRDTICISSQAGCGMNCPFCATGQAGLTRNLSTAEIVEQVTAASRALARD- 181 Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN----VKKSLSIASDSMGLSFSKRRI 217 +P ++SN+V MGMGE L N+ + V++ +S A D GL S R + Sbjct: 182 ---------EVPGGPGRVSNVVFMGMGEALANYKSAVAAVRRLVSPAPD--GLGISARGV 230 Query: 218 TLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276 T+ST G VP I + +E I LA+SLHA ++LR+ LVPIN+++ + +DA R Y Sbjct: 231 TMSTVGLVPAIDKFAQEGIAATLALSLHAPDDELRDELVPINQRWKVGEALDAARRY-FE 289 Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKD 333 + RR++ EY ++K IND A L K+L +N IP NP PG ++ SD Sbjct: 290 ATGRRVSIEYALIKDINDQAWRADRLGKLLNARGRGWVHVNPIPLNPTPGSKWTASDPAV 349 Query: 334 IVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKV 375 F ++ G + +R RG DI ACGQL ++ P+ Sbjct: 350 ERAFVAALENRGIPTTVRDTRGSDIDGACGQLAAIGPEQPRA 391 >gi|227503385|ref|ZP_03933434.1| possible Fe-S-cluster redox protein [Corynebacterium accolens ATCC 49725] gi|306836373|ref|ZP_07469351.1| cfr family radical SAM enzyme [Corynebacterium accolens ATCC 49726] gi|227075888|gb|EEI13851.1| possible Fe-S-cluster redox protein [Corynebacterium accolens ATCC 49725] gi|304567733|gb|EFM43320.1| cfr family radical SAM enzyme [Corynebacterium accolens ATCC 49726] Length = 374 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 117/359 (32%), Positives = 184/359 (51%), Gaps = 37/359 (10%) Query: 19 EALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI--- 75 + L +IG+P + R QI K Y D + M+DI R + + F +PE+ Sbjct: 35 DKLAEIGLP----KFRAKQIAKHYYEHLTDDVEEMTDIPAGKREEVKEAF---FPELMKP 87 Query: 76 VDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134 + + DG T K L R + +E+V + R TLC+SSQ GC + C FC TG Sbjct: 88 IRTTSTDDGETTKSLWRLHDGTL-----LESVLMRYPGRATLCISSQAGCGMACPFCATG 142 Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194 L RNL+ EI+ Q A + + + G ++SN+V MGMGEPL N+ Sbjct: 143 QGGLDRNLSTGEIVEQFRHAAA--------------AMAAEGGRLSNVVFMGMGEPLANY 188 Query: 195 DNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLR 251 V +++ D G S+R +T+ST G P I ++ E++ LA+SLH ++LR Sbjct: 189 KRVVQAVRQITGQDGTGFGLSQRNVTVSTVGLAPAIRKLADEDLACTLAVSLHTPDDELR 248 Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---G 308 + LVP+N ++ ++ ++DA R+Y S ARR++ EY +++ ND A L + L G Sbjct: 249 DSLVPVNNRWSVDEVLDAARYYADKS-ARRVSIEYALIRDKNDQDFRADMLGRKLHQKLG 307 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 +N+IP NP PG E+ + + + F ++ G +R +G +I AACGQL + Sbjct: 308 SKVHVNVIPLNPTPGSEWDAAPKARLNEFVRRVQAQGVPCTVRDTKGDEIAAACGQLAA 366 >gi|289178553|gb|ADC85799.1| Radical SAM family enzyme [Bifidobacterium animalis subsp. lactis BB-12] Length = 430 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 107/272 (39%), Positives = 157/272 (57%), Gaps = 16/272 (5%) Query: 102 EIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF 161 +IE+V + +R TLC+SSQVGC + C FC TG L RN++ EIL QV +A +++ Sbjct: 164 KIESVLMRYPNRTTLCISSQVGCGMGCPFCATGQLGLTRNMSTGEILEQVRIAAAMME-- 221 Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITL 219 G V GR +SN+V MGMGEP+ N+ + ++ A G S R IT+ Sbjct: 222 ------RGEVAGGPGR-LSNVVFMGMGEPMGNYRAIVSAVRQISAMPPEGFGISARNITV 274 Query: 220 STSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN 278 ST G VP I R+ +E + V LA+SLHA +N LR+ LVP+NR++ ++ ++DA Y L++ Sbjct: 275 STVGVVPGIRRLAQEGMPVRLAVSLHAPNNALRDELVPMNRRFNVDEVLDAAHDYY-LAS 333 Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIV 335 RR++ EY +++GIND A L L A +N IP NP G ++ S +D Sbjct: 334 KRRVSIEYALMRGINDQEIHARQLANRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDER 393 Query: 336 TFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 F E + +G ++ +R RG DI ACGQL + Sbjct: 394 RFLEILHNAGITATLRDTRGQDIDGACGQLAA 425 >gi|331698480|ref|YP_004334719.1| ribosomal RNA large subunit methyltransferase N [Pseudonocardia dioxanivorans CB1190] gi|326953169|gb|AEA26866.1| Ribosomal RNA large subunit methyltransferase N [Pseudonocardia dioxanivorans CB1190] Length = 368 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 121/362 (33%), Positives = 182/362 (50%), Gaps = 31/362 (8%) Query: 18 EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD 77 + A+ +G+P R Q+ + + R D M+D+ R L + + + Sbjct: 29 KAAVADLGLPG----FRADQLARHYFGRLTADVDEMTDLPAAARETLASLLPPLVTPVTE 84 Query: 78 EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137 + TRK L R + E+V + R T+C+SSQ GC + C FC TG Sbjct: 85 QSCDEGATRKMLWRGHDGALA-----ESVLMAYPDRATVCISSQAGCGMACPFCATGQGG 139 Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197 L RNL+ EI+ QV A + D E + ++SNIV MGMGEPL N+ V Sbjct: 140 LQRNLSTGEIVDQVRQAAAAARDGALGEPM----------RLSNIVFMGMGEPLANYKRV 189 Query: 198 KKSL----SIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252 +L S A D GL S R IT+ST G V I ++ E + V LA+SLH ++LR+ Sbjct: 190 VAALRRITSPAPD--GLGISPRGITVSTVGLVQAIDKLAAEGLPVTLAVSLHTPDDELRD 247 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GI 309 LVP+N ++ + ++DA R Y + RR++ EY +++ +ND P A L K+L+ G Sbjct: 248 TLVPVNNRWKVGEVLDAARRY-AQATGRRVSIEYALIRDVNDQPWRADLLGKLLRQRVGT 306 Query: 310 P-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 +NLIP NP PG E+ S + F ++ +G + +R RG +I AACGQL + Sbjct: 307 KRVHVNLIPLNPTPGSEWDASPRPVQDEFVRRVQAAGVACTVRDTRGQEIDAACGQLAAT 366 Query: 369 SK 370 + Sbjct: 367 HR 368 >gi|227549023|ref|ZP_03979072.1| possible Fe-S-cluster redox protein [Corynebacterium lipophiloflavum DSM 44291] gi|227078877|gb|EEI16840.1| possible Fe-S-cluster redox protein [Corynebacterium lipophiloflavum DSM 44291] Length = 367 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 117/366 (31%), Positives = 185/366 (50%), Gaps = 31/366 (8%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH-FSI 70 + +EE EAL ++G+P + R QI + Y + D M+D+ + R L+ F Sbjct: 24 LSKEERIEALAELGLP----KFRADQIARHYYGKFQADPLTMTDLPESQRQLVKDALFPT 79 Query: 71 IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130 + EI + T K L R + + +E+V + R TLC+SSQ GC + C F Sbjct: 80 LLTEIRSLETDEGDTTKTLWR-----LHDGILLESVLMRYPDRATLCISSQAGCGMACPF 134 Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 C TG L RNL+ EI+ QV A + + + G ++SNIV MGMGEP Sbjct: 135 CATGQGGLDRNLSTAEIVDQVRAAAARMH--------------AEGSRLSNIVFMGMGEP 180 Query: 191 LCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVS 247 L N++ V ++ + G S+R +T+ST G P I ++ +E + LA+SLH Sbjct: 181 LANYNRVVSAVRQITQPTPDGFGISQRNVTVSTVGLAPQIRKLADEGLSCTLAVSLHTPD 240 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 ++LR+ LVP+N ++ + +++A +Y RR++ EY +++ IND A L + L Sbjct: 241 DELRDELVPMNNRFSVADVLEAASYY-AEQTGRRVSIEYALIRDINDHDFRADMLGRKLH 299 Query: 308 ---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 G +NLIP NP PG ++ S + F + G + +R +G +I AACGQ Sbjct: 300 DALGSKVHVNLIPLNPTPGSKWDASPRARQDEFVRRVIAQGVTCTVRDTKGQEIAAACGQ 359 Query: 365 LKSLSK 370 L + K Sbjct: 360 LAAEEK 365 >gi|291335247|gb|ADD94867.1| putative Fe S cluster redox protein [uncultured marine bacterium MedDCM-OCT-S09-C145] Length = 348 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 123/379 (32%), Positives = 183/379 (48%), Gaps = 49/379 (12%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR----- 61 ++L+G ++LE L G R QI+ W+Y +++ S E+ Sbjct: 2 KNLLGCSVKDLESLALNFG----QAAFRGRQIYSWLY-----NYKNRSKSIDEINVLPLK 52 Query: 62 ---HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118 L N+ F + ++ ++ DGT K LL +E V IP + R T C+ Sbjct: 53 FRDQLKNEAFLFGELTLNEKYLATDGTLKLLLN-----TRDNESVECVGIPTEKRLTACL 107 Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 SSQVGC + C FC TG + L R+L A EIL Q+L + + +K Sbjct: 108 SSQVGCPMDCKFCATGKEGLKRSLKASEILDQILFIEN-----------------QMNQK 150 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE----- 233 +SNIV MGMGEPL N D + LSI S + S+R+IT+ST I+++ + Sbjct: 151 VSNIVFMGMGEPLLNIDEL--LLSIRSINEDFDISQRKITVSTVAIPKMISKLSKLSFQV 208 Query: 234 --EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291 + LAISLHA + +R ++P + Y ++ +ID CR Y RR++FEY+ML G Sbjct: 209 LGKCQFTLAISLHASNQKIREAIIPSAKNYHIKNIIDDCREYVR-ETGRRVSFEYLMLHG 267 Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351 +ND A L ++KG +NLI +N E+ + K+ F + SG + R Sbjct: 268 VNDKLEHADELSNLIKGFQCHVNLIQYNHIEEVEFKQTPTKNAQLFQTRLSNSGINVSFR 327 Query: 352 TPRGLDILAACGQLKSLSK 370 RG D AACGQL+ K Sbjct: 328 KSRGSDRNAACGQLRQNEK 346 >gi|19553223|ref|NP_601225.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium glutamicum ATCC 13032] gi|62390859|ref|YP_226261.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium glutamicum ATCC 13032] gi|81760328|sp|Q8NP06|RLMN_CORGL RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|21324790|dbj|BAB99413.1| Predicted Fe-S-cluster redox enzyme [Corynebacterium glutamicum ATCC 13032] gi|41326198|emb|CAF20360.1| Predicted Fe-S-cluster redox enzyme [Corynebacterium glutamicum ATCC 13032] Length = 366 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 119/357 (33%), Positives = 182/357 (50%), Gaps = 33/357 (9%) Query: 19 EALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEIV 76 EAL ++G+P + R +QI + Y R D M+D+ + R + +++ P V Sbjct: 31 EALKELGLP----KFRLNQIARHYYGRLEADPLTMTDLPEGARQEVKDALFPTLMSPLRV 86 Query: 77 DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136 E D T+K L + + +E+V + R TLC+SSQ GC + C FC TG Sbjct: 87 VE-TDDDTTQKTLWKLHDGTL-----LESVLMRYSDRSTLCISSQAGCGMACPFCATGQG 140 Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196 L RNL+ EI+ QV A + S G ++SNIV MGMGEPL N+ Sbjct: 141 GLDRNLSIGEIVDQVRNA--------------AATMQSEGGRLSNIVFMGMGEPLANYKR 186 Query: 197 VKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNI 253 V ++ G S+R +T+ST G P I ++ EE+ V LA+SLH ++LR+ Sbjct: 187 VVSAVRQITQPSPAGFGISQRSVTVSTVGLAPAIRKLADEEMSVTLAVSLHTPDDELRDT 246 Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIP 310 LVP+N ++P+ ++DA R+Y S RR++ EY +++ +ND A L + L G Sbjct: 247 LVPVNNRWPVAEVLDAARYYADKS-GRRVSIEYALIRDVNDQDWRADMLGEKLHKALGSR 305 Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 +NLIP NP PG ++ + + F + G +R +G +I AACGQL + Sbjct: 306 VHVNLIPLNPTPGSKWDAAPKARQDEFVRRVIAKGVPCTVRDTKGQEIAAACGQLAA 362 >gi|311739708|ref|ZP_07713543.1| cfr family radical SAM enzyme [Corynebacterium pseudogenitalium ATCC 33035] gi|311305524|gb|EFQ81592.1| cfr family radical SAM enzyme [Corynebacterium pseudogenitalium ATCC 33035] Length = 374 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 116/359 (32%), Positives = 182/359 (50%), Gaps = 37/359 (10%) Query: 19 EALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD- 77 + L +IG+P + R Q+ K Y + + M+DI R + + F +PE++ Sbjct: 35 DKLAEIGLP----KFRAKQLAKHYYEHYTDNVEDMTDIPAGKREAVKEAF---FPELMQP 87 Query: 78 -EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134 S D T K L R + +E+V + R TLC+SSQ GC + C FC TG Sbjct: 88 IRTTSTDDGETTKSLWRLHDGTL-----LESVLMRYPGRATLCISSQAGCGMACPFCATG 142 Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194 L RNL+ EI+ Q A + + + G ++SN+V MGMGEPL N+ Sbjct: 143 QGGLDRNLSTGEIVEQFRHAAA--------------AMAAEGGRLSNVVFMGMGEPLANY 188 Query: 195 DNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLR 251 V +++ D G S+R +T+ST G P I ++ E++ LA+SLH ++LR Sbjct: 189 KRVVQAVRQITGQDGAGFGLSQRNVTVSTVGLAPAIRKLADEDLACTLAVSLHTPDDELR 248 Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---G 308 + LVP+N ++ ++ ++DA R+Y S ARR++ EY +++ ND A L + L G Sbjct: 249 DGLVPVNNRWSVDEVLDAARYYADKS-ARRVSIEYALIRDKNDQDFRADMLGRKLHQKLG 307 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 +N+IP NP PG E+ + Q F ++ G +R +G +I AACGQL + Sbjct: 308 SKVHVNVIPLNPTPGSEWDAAPQDRQDEFVRRVQAQGVPCTVRDTKGDEIAAACGQLAA 366 >gi|33862037|ref|NP_893598.1| putative Fe-S-cluster redox protein [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|81575609|sp|Q7V010|RLMN_PROMP RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|33634255|emb|CAE19940.1| conserved hypothetical protein [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 348 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 123/379 (32%), Positives = 184/379 (48%), Gaps = 49/379 (12%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR----- 61 ++L+G ++LE+ L G R QI+ W+Y +++ S E+ Sbjct: 2 KNLLGCSVKDLEKIALNYG----QAAFRGRQIYNWLY-----NYKNRSKSIDEINVLPLK 52 Query: 62 ---HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118 L N+ F + ++ ++ DGT K LL +E V IP + R T C+ Sbjct: 53 FRDQLKNEAFLFGELTLKEKYLATDGTLKLLLN-----TRDNESVECVGIPTEKRLTACL 107 Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 SSQVGC + C FC TG + L R+L EIL Q+L + + +K Sbjct: 108 SSQVGCPMDCKFCATGKEGLKRSLKVSEILDQILFIEN-----------------QMNQK 150 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE----- 233 +SNIV MGMGEPL N D + LSI S + + S+R+IT+ST I+++ E Sbjct: 151 VSNIVFMGMGEPLLNIDEL--LLSIRSINEDFAISQRKITVSTVAIPKMISKLSELSFQV 208 Query: 234 --EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291 + LAISLHA + +R ++P + Y ++ +ID CR Y RR++FEY+ML G Sbjct: 209 LGKCQFTLAISLHASNQKIREAIIPSAKNYHIKNIIDDCREYVR-ETGRRVSFEYLMLHG 267 Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351 +ND A L ++KG +NLI +N E+ + K+ F + SG + R Sbjct: 268 VNDKLEHADELSNLIKGFQCHVNLIQYNHIEEVEFKQTPIKNAQLFQTRLSNSGINVSFR 327 Query: 352 TPRGLDILAACGQLKSLSK 370 RG D AACGQL+ K Sbjct: 328 KSRGSDRNAACGQLRQNDK 346 >gi|255085148|ref|XP_002505005.1| predicted protein [Micromonas sp. RCC299] gi|226520274|gb|ACO66263.1| predicted protein [Micromonas sp. RCC299] Length = 375 Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 123/376 (32%), Positives = 193/376 (51%), Gaps = 43/376 (11%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDI----SQEVRHL 63 +L+GM EL+ + G+P + R Q+ +Y G++ + + D+ R L Sbjct: 23 NLLGMTLPELKTFAEEAGLP----KFRGKQLRDHLY--GVKPAKNIDDLVTLPKAARRQL 76 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG----TLCVS 119 L+ S+ + S DGT K LLR + +ETV IP G T CVS Sbjct: 77 LDAGVSVGRSVVHHVAGSPDGTTKLLLRLHDDRV-----VETVGIPAHEAGHRRLTACVS 131 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 SQVGC + C+FC TG RNL EI+ QV+ SL F G ++ Sbjct: 132 SQVGCPMRCTFCATGKGGFARNLATHEIVDQVV---SLEEHF--------------GERV 174 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVM 238 ++IV MGMGEPL N NV ++ + +G+ R IT+ST G I R+ ++ Sbjct: 175 THIVFMGMGEPLLNVPNVLRAHEALNKEVGI--GSRHITISTVGVRGAIERLARAKLQST 232 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LAISLHA + +LR L+P + YP++ L++ + Y ++ RR+TFEY +L G+NDS + Sbjct: 233 LAISLHAPNQELRERLIPSAKAYPMQELLNDAQQY-FIATGRRVTFEYTLLAGVNDSIQQ 291 Query: 299 ALNLIKIL--KGIPAKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 A L ++L + + +N+IP+NP ++ + I+ F +++ + IR RG Sbjct: 292 AEELGRLLYKNKLASHVNIIPYNPVDDAPDFKRPGRASILNFRNTLEQMNVPASIRQSRG 351 Query: 356 LDILAACGQLKSLSKR 371 L+ AACGQL++ ++ Sbjct: 352 LEAAAACGQLRNAYQK 367 >gi|255325234|ref|ZP_05366340.1| radical SAM enzyme, Cfr family [Corynebacterium tuberculostearicum SK141] gi|255297799|gb|EET77110.1| radical SAM enzyme, Cfr family [Corynebacterium tuberculostearicum SK141] Length = 366 Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 116/359 (32%), Positives = 181/359 (50%), Gaps = 37/359 (10%) Query: 19 EALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD- 77 + L +IG+P + R Q+ K Y + + M+DI R + + F +PE++ Sbjct: 27 DKLAEIGLP----KFRAKQLAKHYYEHYTDNVEDMTDIPAGKREAVKEAF---FPELMQP 79 Query: 78 -EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134 S D T K L R + +E+V + R TLC+SSQ GC + C FC TG Sbjct: 80 IRTTSTDDGETTKSLWRLHDGTL-----LESVLMRYPGRATLCISSQAGCGMACPFCATG 134 Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194 L RNL+ EI+ Q A + + G ++SN+V MGMGEPL N+ Sbjct: 135 QGGLDRNLSTGEIVEQFRHAA--------------AAMAAEGGRLSNVVFMGMGEPLANY 180 Query: 195 DNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLR 251 V +++ D G S+R +T+ST G P I ++ E++ LA+SLH ++LR Sbjct: 181 KRVVQAVRQITGQDGAGFGLSQRNVTVSTVGLAPAIRKLADEDLACTLAVSLHTPDDELR 240 Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---G 308 + LVP+N ++ ++ ++DA R+Y S ARR++ EY +++ ND A L + L G Sbjct: 241 DGLVPVNNRWSVDEVLDAARYYADKS-ARRVSIEYALIRDKNDQDFRADMLGRKLHQKLG 299 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 +N+IP NP PG E+ + Q F ++ G +R +G +I AACGQL + Sbjct: 300 SKVHVNVIPLNPTPGSEWDAAPQDRQDEFVRRVQAQGVPCTVRDTKGDEIAAACGQLAA 358 >gi|145295923|ref|YP_001138744.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium glutamicum R] gi|205829740|sp|A4QF26|RLMN_CORGB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|140845843|dbj|BAF54842.1| hypothetical protein [Corynebacterium glutamicum R] Length = 366 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 118/357 (33%), Positives = 182/357 (50%), Gaps = 33/357 (9%) Query: 19 EALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEIV 76 EAL ++G+P + R +QI + Y R D M+D+ + R + +++ P V Sbjct: 31 EALKELGLP----KFRLNQIARHYYGRLEADPLTMTDLPEGARQEVKDALFPTLMSPLRV 86 Query: 77 DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136 E D T+K L + + +E+V + R TLC+SSQ GC + C FC TG Sbjct: 87 IE-TDDDTTQKTLWKLHDGTL-----LESVLMRYSDRSTLCISSQAGCGMACPFCATGQG 140 Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196 L RNL+ EI+ QV A + + G ++SNIV MGMGEPL N+ Sbjct: 141 GLDRNLSIGEIVDQVRNA--------------AATMQAEGGRLSNIVFMGMGEPLANYKR 186 Query: 197 VKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNI 253 V ++ G S+R +T+ST G P I ++ EE+ V LA+SLH ++LR+ Sbjct: 187 VVSAVRQITQPSPAGFGISQRSVTVSTVGLAPAIRKLADEEMSVTLAVSLHTPDDELRDT 246 Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIP 310 LVP+N ++P+ ++DA R+Y S RR++ EY +++ +ND A L + L G Sbjct: 247 LVPVNNRWPVAEVLDAARYYADKS-GRRVSIEYALIRDVNDQDWRADMLGEKLHKALGSR 305 Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 +NLIP NP PG ++ + + F + G +R +G +I AACGQL + Sbjct: 306 VHVNLIPLNPTPGSKWDAAPKARQDEFVRRVIAKGVPCTVRDTKGQEIAAACGQLAA 362 >gi|159487459|ref|XP_001701740.1| predicted Fe-S-cluster redox enzyme [Chlamydomonas reinhardtii] gi|158280959|gb|EDP06715.1| predicted Fe-S-cluster redox enzyme [Chlamydomonas reinhardtii] Length = 502 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 125/371 (33%), Positives = 178/371 (47%), Gaps = 61/371 (16%) Query: 34 RTSQIWKWIY--------VRGIRDFQGMSD-ISQEVRHLLNQHFSIIYPEIVDEKI-SCD 83 R QIW+W+Y VR + + G + + + + H S+ + + + + D Sbjct: 118 RALQIWRWMYADPPAGSWVRSLEETMGRQNGFAAKFVEKVGPHVSLEGGLKLSQVVRASD 177 Query: 84 GTRKWLLRF-PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNL 142 GTRK + GG IETV IP VGC++ C FCYTG L+ NL Sbjct: 178 GTRKLVFTLLGGEAAGG--SIETVLIP-----------VVGCAMNCQFCYTGRMGLLGNL 224 Query: 143 TAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS 202 + +I+ QV+ AR L EG P ++N+V MGMGEPL N + V + Sbjct: 225 STAQIVEQVVEARRFLAQ-------EGDRTP-----LTNLVFMGMGEPLHNTEAVLAAAD 272 Query: 203 IASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYP 262 I S +GL S +IT+ST G VP + V V +A+SLHA ++++R+ +VP+NR+Y Sbjct: 273 IVSHYLGLHISHNKITISTVGLVPEMRAVLARTRVQVALSLHATTDEVRDWIVPVNRRYD 332 Query: 263 LEMLIDACRH-YPGLSNA------------------------RRITFEYVMLKGINDSPR 297 L L A +P A R + EY ML GIND+ Sbjct: 333 LATLTAALEEMFPKEEEAAIGSLSSSDEAAAAAAGKGSSKEGRSLLVEYTMLHGINDTLD 392 Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 DA L +L+ + K+NLI FNP G + S +DI F + RSG IR RG D Sbjct: 393 DAHRLADMLRRVNCKVNLIVFNPHKGTRFQPSTDEDISAFRSALIRSGMVCTIRDSRGDD 452 Query: 358 ILAACGQLKSL 368 +AACGQL ++ Sbjct: 453 EMAACGQLGNV 463 >gi|315187026|gb|EFU20783.1| radical SAM enzyme, Cfr family [Spirochaeta thermophila DSM 6578] Length = 354 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 119/377 (31%), Positives = 189/377 (50%), Gaps = 39/377 (10%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M ++ SL G++ EE+ E L R R QI++WI+ + I F GM+ + + Sbjct: 1 MRTRERLSLSGLLPEEISELL------PMEPRYRAIQIFEWIHAKRILSFSGMTTLPSRL 54 Query: 61 RHLLNQHFSI----IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE-KSRGT 115 R L+ + + I+ + D D T K +R I +E V + + K R T Sbjct: 55 REELSSSYHVRGATIHALVQDPG---DETIKAQVRLQDGQI-----VEAVVLTDGKGRKT 106 Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175 C+S+Q GC++ C+FC TG RNLT EI+ Q L+ + G Sbjct: 107 ACLSTQAGCAMGCAFCKTGQLGFSRNLTPGEIVDQWLILQDTAGP--------------- 151 Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE- 234 +S+IV MGMGEPL N N++K++SI S G S RRIT+ST G VP I + EE Sbjct: 152 ---LSHIVFMGMGEPLLNLANLRKAISILSHERGSRLSLRRITVSTCGIVPGILSLAEEG 208 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 V LA SL + ++R L+P+ ++PL+ + +A Y + +RIT E V ++G+ Sbjct: 209 PHVRLAFSLTSARPEVRKQLMPVEARHPLDHVKEALLKYQA-ATGKRITLEVVAIEGLTC 267 Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 +P ++ + +G+ +N+IP+NP PG Y + +F + + + +R + Sbjct: 268 TPEESRAIAGFAEGLRVLVNVIPWNPVPGLPYRPPSPAALSSFVSSLTKKALTVTVRYRK 327 Query: 355 GLDILAACGQLKSLSKR 371 G I ACGQL ++ R Sbjct: 328 GQHIHGACGQLGVVTPR 344 >gi|300742035|ref|ZP_07072056.1| radical SAM enzyme, Cfr family [Rothia dentocariosa M567] gi|311111949|ref|YP_003983171.1| cfr family radical SAM enzyme [Rothia dentocariosa ATCC 17931] gi|300381220|gb|EFJ77782.1| radical SAM enzyme, Cfr family [Rothia dentocariosa M567] gi|310943443|gb|ADP39737.1| cfr family radical SAM enzyme [Rothia dentocariosa ATCC 17931] Length = 409 Score = 176 bits (446), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 116/342 (33%), Positives = 180/342 (52%), Gaps = 13/342 (3%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R SQ+ K + R + D M+D+ + R ++ S P+++ + + L+ Sbjct: 70 FRASQLSKHYFERLVNDPAQMTDLPAQDR---DEIVSRAMPQLLTPVRTLEADGGDTLKV 126 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 R G + IE+V + +R T+C+SSQ GC + C FC TG Q L RNL+ EI+ QV+ Sbjct: 127 VHRLFDGAL-IESVIMRYDNRVTMCISSQAGCGMNCPFCATGQQGLTRNLSTAEIVEQVV 185 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGL 210 L G + +G + ++SNIV MGMGE L N+ + ++ I GL Sbjct: 186 AGARYLKQMKGLDKADGGSEDTRPLRVSNIVFMGMGEALANYKSTMGAVHRLIDPAPEGL 245 Query: 211 SFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 S R +T+ST G VP I + E++ + LA+SLHA ++LR+ L+PIN+++ ++ +DA Sbjct: 246 GISARGLTMSTVGLVPGIRKFELEKLPITLALSLHAPDDELRDELIPINQRWKVDETLDA 305 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL----KGIPAKINLIPFNPWPGCE 325 Y + RRI+ EY +++ IND A L K L +G +N IP NP PG + Sbjct: 306 AYDY-YRTTGRRISIEYALIRDINDQGWRADLLGKKLAQRGRGW-VHVNPIPLNPTPGSK 363 Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 + S + F E ++ G + IR RG DI ACGQL + Sbjct: 364 WTASRKGVEQNFVERLRAHGIPTTIRDTRGSDIDGACGQLAA 405 >gi|293400143|ref|ZP_06644289.1| radical SAM enzyme, Cfr family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306543|gb|EFE47786.1| radical SAM enzyme, Cfr family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 329 Score = 176 bits (445), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 99/273 (36%), Positives = 148/273 (54%), Gaps = 23/273 (8%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 IETV+I + GT+CVS+QVGCS+ C FC +G VRNLT EI+ QV+L R Sbjct: 76 IETVFIKRRDGGTVCVSTQVGCSVGCIFCESGRNGFVRNLTPSEIVQQVILIR------- 128 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 +K++ IV MGMGEPL N+DN+ ++ I D GL+F IT+ST Sbjct: 129 --------------QKVNRIVFMGMGEPLFNYDNLIAAIHILRDRNGLNFPTDGITISTV 174 Query: 223 GFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281 G V + ++ EE + + L ISLHA + +RN ++P Y +E ++ Y N R+ Sbjct: 175 GPVNQLKKLREEHLKIQLTISLHAATQAVRNCIIPHMHMYAIEDVVKQALSYSQRHN-RK 233 Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341 + F Y++L GIND D L K KG IN++ +NP + ++++V F + Sbjct: 234 VVFAYLLLPGINDRSSDIRQLAKWFKGKNVMINVLQYNPTSNSKIRAPQKQEMVAFKHQL 293 Query: 342 KRSGYSSPIRTPRGLDILAACGQLKSLSKRIPK 374 +++G +R G +I AACGQL + + K Sbjct: 294 EQTGLEVTMRVSHGREIKAACGQLANTYNKAKK 326 >gi|189346924|ref|YP_001943453.1| radical SAM enzyme, Cfr family [Chlorobium limicola DSM 245] gi|254807162|sp|B3ED49|RLMN_CHLL2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|189341071|gb|ACD90474.1| radical SAM enzyme, Cfr family [Chlorobium limicola DSM 245] Length = 361 Score = 176 bits (445), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 125/374 (33%), Positives = 192/374 (51%), Gaps = 35/374 (9%) Query: 14 REELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYP 73 + EL A+ +G P R +Q+ +W++ R F ++ I+ +R L+ +SI Sbjct: 13 KPELIRAITSLGEPA----YRAAQLHQWLFSHRTRSFDDITIINLALRQKLSSIYSIRTA 68 Query: 74 EIVD--EKISCDG---TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 + D ++ D T K+L+R + +E V IP ++R T C+SSQ GCSL C Sbjct: 69 TLDDCRQEYRDDHEIPTTKFLVR-----MHDDETVEAVLIPAENRITACISSQAGCSLHC 123 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 SFC TG RNLT+ E+ QV L L + G+ I+NIV MGMG Sbjct: 124 SFCATGKTGFRRNLTSGEMTDQVFLLNDHLAEH-------------YGQTITNIVFMGMG 170 Query: 189 EPLCNFDNVKKSL-SIASDSMGLSFSKRRITLSTSGFVPNI---ARVGEEIGVMLAISLH 244 EPL N +V ++ ++++ + S S+R+I++ST+G +P I AR+ + V LA+SLH Sbjct: 171 EPLLNMTHVLDAIETLSNHNYRYSLSQRKISISTAGIIPQIDLLARLPHK--VKLAVSLH 228 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 + R ++P R+YPL L + Y LS + +T Y++L+ INDSP DA L+K Sbjct: 229 SAIQTNRESIMPAAREYPLPALKKSLAEYNRLS-GQPVTLVYMLLRDINDSPEDAKALVK 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 K + KINLI +N ++ F + SG +R G I AACGQ Sbjct: 288 FAKSLFCKINLIDYNAIVNIKFKPVYTGKSELFLRSLLDSGLQVTVRKSHGASINAACGQ 347 Query: 365 LKSLSK-RIPKVPR 377 L + S+ +P+ P Sbjct: 348 LVTESRLHLPEEPH 361 >gi|320538490|ref|ZP_08038353.1| radical SAM enzyme, Cfr family [Treponema phagedenis F0421] gi|320144661|gb|EFW36414.1| radical SAM enzyme, Cfr family [Treponema phagedenis F0421] Length = 356 Score = 176 bits (445), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 119/360 (33%), Positives = 183/360 (50%), Gaps = 35/360 (9%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L G++ EE+ +PQ+ + QI++WI G+ F M+++S R L Sbjct: 18 LTGLLPEEIYRV---CALPQK---FQGEQIFRWI-ASGVESFAEMTNLSLSERERLANSA 70 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQVGCSLT 127 I ++ DGT K + + +ETV + +++ R T CVS QVGC ++ Sbjct: 71 VIRGSKLAVILKDPDGTIKLGID-----LYDSQRVETVLLIDRAGRKTACVSCQVGCPMS 125 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 CSFC TG RNLTA EI+ Q L + G K+ NIV MGM Sbjct: 126 CSFCQTGQLGFTRNLTAAEIVEQFLHLEKIAG------------------KLDNIVFMGM 167 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG--VMLAISLHA 245 GEP+ N ++K++++ + G + S RRITLSTSG I +G +G + LA+SL Sbjct: 168 GEPMLNLPAIRKAIAVLTHKKGRALSPRRITLSTSGICKGIYELGS-LGPDIRLAVSLTT 226 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + LR L+PI ++ LE L A + +R+T E +++GIN +P A +I+ Sbjct: 227 ANTALRTKLMPITKQNSLEDLKKAIAFF-NEKTKKRVTLELALMRGINTAPSFAREVIEF 285 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 KG+ INLIP+NP +Y +K+++ F ++++G +R RG I ACGQL Sbjct: 286 SKGLNVHINLIPWNPVESLDYASPTEKELIGFESLLRKAGIPVTLRHRRGKTICGACGQL 345 >gi|78779958|ref|YP_398070.1| putative Fe-S-cluster redox protein [Prochlorococcus marinus str. MIT 9312] gi|123768932|sp|Q318R1|RLMN_PROM9 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|78713457|gb|ABB50634.1| 23S rRNA m(2)A-2503 methyltransferase [Prochlorococcus marinus str. MIT 9312] Length = 348 Score = 176 bits (445), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 126/375 (33%), Positives = 186/375 (49%), Gaps = 49/375 (13%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQ-EV----- 60 ++L+G ++LE L G R QI+ WIY ++ +I Q EV Sbjct: 2 KNLLGSSIKDLENIALDYG----QAAFRGRQIYSWIYNYRNKN----KNIDQIEVLPLDF 53 Query: 61 -RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119 + L + F + ++K++ DGT K LL IE V IP + R T C+S Sbjct: 54 RKKLKDDGFKVSELSFQEKKLANDGTLKLLL-----STNDNESIECVGIPTEKRLTACLS 108 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 SQVGC + C FC TG + L R+L A EIL Q+L + + RK+ Sbjct: 109 SQVGCPMDCKFCATGKEGLKRSLKASEILDQILF-----------------IENEMNRKV 151 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI-----ARVGEE 234 +NIV MGMGEPL N D + LSI S + S+R+IT+ST VP + AR + Sbjct: 152 TNIVFMGMGEPLLNIDEL--LLSIRSINEDFQISQRKITVSTVA-VPKMMSKLSARSFQI 208 Query: 235 IG---VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291 +G LAISLHA + R ++P + Y ++ +I+ + + RR++FEY+ML G Sbjct: 209 LGNCQFTLAISLHASNQKTRETIIPSAKNYEIKNIIEDSKQFVK-DTGRRVSFEYLMLSG 267 Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351 +ND A L +L+G +NLI +N E+ + K++ F + +G + R Sbjct: 268 VNDKLEHANELSNLLRGFQCHVNLIQYNQIDEVEFKRASLKNLQLFQSRLSNNGITVSFR 327 Query: 352 TPRGLDILAACGQLK 366 RGLD AACGQL+ Sbjct: 328 KSRGLDKNAACGQLR 342 >gi|307718490|ref|YP_003874022.1| radical SAM enzyme, Cfr family [Spirochaeta thermophila DSM 6192] gi|306532215|gb|ADN01749.1| radical SAM enzyme, Cfr family [Spirochaeta thermophila DSM 6192] Length = 354 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 115/379 (30%), Positives = 184/379 (48%), Gaps = 43/379 (11%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M ++ SL G++ E++ E L R R+ QI++WI+ + I F GM+ + + Sbjct: 1 MRTRERFSLSGLLPEDISELLTA------EPRYRSLQIFEWIHAKRISSFTGMTTLPSRL 54 Query: 61 RHLLNQHFSI-------IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR 113 R L+ + + + + DE I R G + V K R Sbjct: 55 REELSSSYHVRGASLHALLQDPGDETIKAQ----------VRLQDGQIVEAVVLTDGKGR 104 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 T C+S+Q GC++ C+FC TG RNLT EI+ Q L+ + G Sbjct: 105 KTACLSTQAGCAMGCAFCNTGQLGFSRNLTPGEIVDQWLILQDTAGP------------- 151 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233 +S+IV MGMGEPL N N++K++SI S G S RRIT+ST G VP I + E Sbjct: 152 -----LSHIVFMGMGEPLLNLANLRKAISILSHERGSRLSLRRITVSTCGIVPGILSLAE 206 Query: 234 E-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 E V LA SL + ++R L+P+ ++PL+ + +A Y + +RIT E V ++G+ Sbjct: 207 EGPHVRLAFSLTSARPEVRKQLMPVEARHPLDHVKEALLRYQA-ATGKRITLEVVAIEGL 265 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 +P ++ + +G+ +N+IP+NP PG Y + +F + + + +R Sbjct: 266 TCTPEESRAIAGFAEGLRVLVNVIPWNPVPGLPYRPPSPAALSSFVSSLTKKALTVTVRY 325 Query: 353 PRGLDILAACGQLKSLSKR 371 +G I ACGQL ++ R Sbjct: 326 RKGQHIHGACGQLGVVTPR 344 >gi|329766407|ref|ZP_08257953.1| radical SAM protein [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137176|gb|EGG41466.1| radical SAM protein [Candidatus Nitrosoarchaeum limnia SFB1] Length = 351 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 124/369 (33%), Positives = 196/369 (53%), Gaps = 31/369 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + L ++ EE+E+ ++ +G P R R QI +Y + ++ + + +R L + Sbjct: 2 KDLYRLLPEEMEQMVIDMGQP----RYRADQILYPLYYKFPKNISEIRQLPTMMRDKLAE 57 Query: 67 HFSIIYPEI-VDEKISCDG-TRKWLLRFPARCIGGPVEIETV-YIPEK----SRGTLCVS 119 +I V +S DG T K LL G PVE + Y P K R T+CVS Sbjct: 58 EGYVIGSATEVHRVVSEDGDTTKLLLNL---ADGTPVETVLIQYPPSKINGHPRSTICVS 114 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 +QVGC++ C+FC TG RN+ AEEI+ QV+ LL G+ + Sbjct: 115 TQVGCAMGCTFCATGQMGFERNIKAEEIVAQVIHFAELL--------------EKRGQHV 160 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238 +N+V MGMGEPL N+D +++ + + G +R IT+ST G + I ++ EE + + Sbjct: 161 TNLVFMGMGEPLVNYDETIRAVRLLTHPRGFGIGQRNITISTIGIISGIDKLAEEDLQIG 220 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LAISLHA ++ LR LVP + ++ LI A + Y RR+TFEY +++G+NDSP Sbjct: 221 LAISLHAPNDKLRQKLVPTAGPHSVDDLIAAGKRYFK-KTGRRVTFEYALIEGVNDSPEI 279 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L +L G + +NLIP NP G ++ ++ ++ F + +G + +R +G +I Sbjct: 280 AKELSLLLDGNGSHVNLIPLNPTTG-DFHRPSKRSVLEFERILNIAGVNCTVRVEKGTEI 338 Query: 359 LAACGQLKS 367 AACGQL++ Sbjct: 339 SAACGQLRT 347 >gi|307826514|ref|ZP_07656687.1| radical SAM enzyme, Cfr family [Methylobacter tundripaludum SV96] gi|307732443|gb|EFO03343.1| radical SAM enzyme, Cfr family [Methylobacter tundripaludum SV96] Length = 271 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 112/281 (39%), Positives = 144/281 (51%), Gaps = 51/281 (18%) Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLA-RSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + CSFC+TG Q L RNLT EI+ Q L A R L + PG E +I NIV Sbjct: 1 MNCSFCFTGKQGLKRNLTTSEIVGQFLQAWRWLAKNRPGEE------------RILNIVF 48 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243 MG GEPL NFD VKK+ I G S +RIT+ST+G++P + R +EI GV LA+SL Sbjct: 49 MGQGEPLHNFDAVKKACEIFLSKHGTSIGVQRITISTAGYIPGLKRWSQEIPGVNLALSL 108 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYP----------------------------- 274 H+ + RN L+PIN KYPL+ ++ P Sbjct: 109 HSPFEEKRNELIPINIKYPLDEVLATIDKIPLNKKQFITYEYILIKDFNDTPDDAXXXXE 168 Query: 275 --------GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 L+ + IT+EY+++K NDSP DA L IL G A INLIPFN +PG Y Sbjct: 169 VLATIDKIPLNKKQFITYEYILIKDFNDSPDDAKKLGTILAGKSAYINLIPFNSFPGSHY 228 Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 D I F E + + IR+ +G D+LAACGQL S Sbjct: 229 KRPDLDKIEKFKEVLDTFKIPTLIRSAKGDDVLAACGQLNS 269 >gi|159463592|ref|XP_001690026.1| predicted protein [Chlamydomonas reinhardtii] gi|158284014|gb|EDP09764.1| predicted protein [Chlamydomonas reinhardtii] Length = 374 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 113/354 (31%), Positives = 179/354 (50%), Gaps = 39/354 (11%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLL-- 90 M ++W W+ + + D+ + LL+++F ++V + S DG+ LL Sbjct: 30 MHALRMWGWLIRNPSATWHDVPDMPKAAVALLDKYFVKFTTKVVKCQNSSDGSTTKLLVE 89 Query: 91 ------------RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKL 138 + A + + R TLCVSSQVGC + C+FC TGT L Sbjct: 90 LQDGMQVEAVVMTYDAPSVTAAGAAAAAAARARKRSTLCVSSQVGCQMGCTFCATGTMGL 149 Query: 139 VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVK 198 +L A EI+ Q++ AR++ +I N+V MGMGEPL N++ V+ Sbjct: 150 KGHLNAGEIVEQLVHARAVA-------------------RIRNVVFMGMGEPLNNYEAVR 190 Query: 199 KSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPI 257 ++++ +DS +R +T+ST G +P I ++ E++ GV LA+SLHA + +LR +VP Sbjct: 191 GAVAMMTDSKYFGLRRRHVTVSTVGVIPRIKQLAEDLPGVSLALSLHAPTQELRLQIVPS 250 Query: 258 NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIP 317 R Y L+ L++A R Y ++++R+ +EYVML G+ND A L ++LKG INLIP Sbjct: 251 ARAYKLDKLMEAVRSYQA-NSSQRVFYEYVMLSGVNDGEEQAHQLGQLLKGDDVVINLIP 309 Query: 318 FNPW---PGCEYLCSDQKDIVTFSECIKRS-GYSSPIRTPRGLDILAACGQLKS 367 +NP G + + TF ++ G + IR G DI A G K+ Sbjct: 310 WNPIYQPEGPFFEAPRDGSVGTFQSILRHQYGLHTTIRQEMGQDISGAWGWGKA 363 >gi|160938516|ref|ZP_02085871.1| hypothetical protein CLOBOL_03414 [Clostridium bolteae ATCC BAA-613] gi|167760863|ref|ZP_02432990.1| hypothetical protein CLOSCI_03251 [Clostridium scindens ATCC 35704] gi|225375530|ref|ZP_03752751.1| hypothetical protein ROSEINA2194_01155 [Roseburia inulinivorans DSM 16841] gi|239623023|ref|ZP_04666054.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|240147536|ref|ZP_04746137.1| radical SAM enzyme, Cfr family [Roseburia intestinalis L1-82] gi|158438889|gb|EDP16646.1| hypothetical protein CLOBOL_03414 [Clostridium bolteae ATCC BAA-613] gi|167661466|gb|EDS05596.1| hypothetical protein CLOSCI_03251 [Clostridium scindens ATCC 35704] gi|225212619|gb|EEG94973.1| hypothetical protein ROSEINA2194_01155 [Roseburia inulinivorans DSM 16841] gi|239522602|gb|EEQ62468.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] gi|257200248|gb|EEU98532.1| radical SAM enzyme, Cfr family [Roseburia intestinalis L1-82] Length = 329 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 99/273 (36%), Positives = 147/273 (53%), Gaps = 23/273 (8%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 IETV+I + GT+CVS+QVGCS+ C FC +G VRNLT EI+ QV+L R Sbjct: 76 IETVFIKRRDGGTVCVSTQVGCSVGCIFCESGRNGFVRNLTPSEIVQQVILIR------- 128 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 +K++ IV MGMGEPL N+DN+ ++ I D GL+F IT+ST Sbjct: 129 --------------QKVNRIVFMGMGEPLFNYDNLIAAIHILRDRNGLNFPTDGITVSTV 174 Query: 223 GFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281 G V + ++ EE + + L ISLHA + RN ++P Y +E ++ Y N R+ Sbjct: 175 GPVNQLKKLREEHLKIQLTISLHAATQAARNCIIPHMHMYAIEDVVKQALSYSQRHN-RK 233 Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341 + F Y++L GIND D L K KG IN++ +NP + ++++V F + Sbjct: 234 VVFAYLLLPGINDRSSDIRQLAKWFKGKNVMINVLQYNPTSNSKIRAPQKQEMVAFKHQL 293 Query: 342 KRSGYSSPIRTPRGLDILAACGQLKSLSKRIPK 374 +++G +R G +I AACGQL + + K Sbjct: 294 EQTGLEVTMRVSHGREIKAACGQLANTYNKAKK 326 >gi|317501363|ref|ZP_07959565.1| cfr family Radical SAM enzyme [Lachnospiraceae bacterium 8_1_57FAA] gi|325263263|ref|ZP_08129998.1| radical SAM enzyme, Cfr family [Clostridium sp. D5] gi|328948778|ref|YP_004366115.1| radical SAM protein [Treponema succinifaciens DSM 2489] gi|316897227|gb|EFV19296.1| cfr family Radical SAM enzyme [Lachnospiraceae bacterium 8_1_57FAA] gi|324031656|gb|EGB92936.1| radical SAM enzyme, Cfr family [Clostridium sp. D5] gi|328449102|gb|AEB14818.1| radical SAM enzyme, Cfr family [Treponema succinifaciens DSM 2489] Length = 329 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 99/273 (36%), Positives = 147/273 (53%), Gaps = 23/273 (8%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 IETV+I + GT+CVS+QVGCS+ C FC +G VRNLT EI+ QV+L R Sbjct: 76 IETVFIKRRDGGTVCVSTQVGCSVGCIFCESGRNGFVRNLTPSEIVQQVILIR------- 128 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 +K++ IV MGMGEPL N+DN+ ++ I D GL+F IT+ST Sbjct: 129 --------------QKVNRIVFMGMGEPLFNYDNLIAAIHILRDRNGLNFPTDGITVSTV 174 Query: 223 GFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281 G V + ++ EE + + L ISLHA + RN ++P Y +E ++ Y N R+ Sbjct: 175 GPVNQLKKLREEHLKIQLTISLHAATQAARNCIIPHMHMYAIEDVVKQALSYSQRHN-RK 233 Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341 + F Y++L GIND D L K KG IN++ +NP + ++++V F + Sbjct: 234 VVFAYLLLPGINDRSSDIRQLAKWFKGKNVMINVLQYNPTSNSKIRAPQKQEMVAFKHQL 293 Query: 342 KRSGYSSPIRTPRGLDILAACGQLKSLSKRIPK 374 +++G +R G +I AACGQL + + K Sbjct: 294 EQTGLEVTMRVSHGREIKAACGQLANTYNKAKK 326 >gi|163816252|ref|ZP_02207619.1| hypothetical protein COPEUT_02440 [Coprococcus eutactus ATCC 27759] gi|166032398|ref|ZP_02235227.1| hypothetical protein DORFOR_02101 [Dorea formicigenerans ATCC 27755] gi|167747584|ref|ZP_02419711.1| hypothetical protein ANACAC_02305 [Anaerostipes caccae DSM 14662] gi|167771778|ref|ZP_02443831.1| hypothetical protein ANACOL_03150 [Anaerotruncus colihominis DSM 17241] gi|210615433|ref|ZP_03290560.1| hypothetical protein CLONEX_02776 [Clostridium nexile DSM 1787] gi|227498634|ref|ZP_03928778.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|283796286|ref|ZP_06345439.1| radical SAM enzyme, Cfr family [Clostridium sp. M62/1] gi|331088114|ref|ZP_08337035.1| cfr family radical SAM enzyme [Lachnospiraceae bacterium 3_1_46FAA] gi|158448447|gb|EDP25442.1| hypothetical protein COPEUT_02440 [Coprococcus eutactus ATCC 27759] gi|166028121|gb|EDR46878.1| hypothetical protein DORFOR_02101 [Dorea formicigenerans ATCC 27755] gi|167652946|gb|EDR97075.1| hypothetical protein ANACAC_02305 [Anaerostipes caccae DSM 14662] gi|167666418|gb|EDS10548.1| hypothetical protein ANACOL_03150 [Anaerotruncus colihominis DSM 17241] gi|210150282|gb|EEA81291.1| hypothetical protein CLONEX_02776 [Clostridium nexile DSM 1787] gi|226904090|gb|EEH90008.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|291076221|gb|EFE13585.1| radical SAM enzyme, Cfr family [Clostridium sp. M62/1] gi|291543137|emb|CBL16247.1| radical SAM enzyme, Cfr family [Ruminococcus bromii L2-63] gi|330409070|gb|EGG88529.1| cfr family radical SAM enzyme [Lachnospiraceae bacterium 3_1_46FAA] Length = 329 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 99/273 (36%), Positives = 147/273 (53%), Gaps = 23/273 (8%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 IETV+I + GT+CVS+QVGCS+ C FC +G VRNLT EI+ QV+L R Sbjct: 76 IETVFIKRRDGGTVCVSTQVGCSVGCIFCESGRNGFVRNLTPSEIVQQVVLIR------- 128 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 +K++ IV MGMGEPL N+DN+ ++ I D GL+F IT+ST Sbjct: 129 --------------QKVNRIVFMGMGEPLFNYDNLIAAIHILRDRNGLNFPTDGITVSTV 174 Query: 223 GFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281 G V + ++ EE + + L ISLHA + RN ++P Y +E ++ Y N R+ Sbjct: 175 GPVNQLKKLREEHLKIQLTISLHAATQAARNCIIPHMHMYAIEDVVKQALSYSQRHN-RK 233 Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341 + F Y++L GIND D L K KG IN++ +NP + ++++V F + Sbjct: 234 VVFAYLLLPGINDRSSDIRQLAKWFKGKNVMINVLQYNPTSNSKIRAPQKQEMVAFKHQL 293 Query: 342 KRSGYSSPIRTPRGLDILAACGQLKSLSKRIPK 374 +++G +R G +I AACGQL + + K Sbjct: 294 EQTGLEVTMRVSHGREIKAACGQLANTYNKAKK 326 >gi|269795650|ref|YP_003315105.1| radical SAM enzyme, Cfr family [Sanguibacter keddieii DSM 10542] gi|269097835|gb|ACZ22271.1| radical SAM enzyme, Cfr family [Sanguibacter keddieii DSM 10542] Length = 364 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 122/347 (35%), Positives = 180/347 (51%), Gaps = 32/347 (9%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE--KISCDG--TRKW 88 R Q+ + D Q M+D+ R +L ++P ++ + + DG T K Sbjct: 34 FRAKQLATHYFSHLTADPQDMTDLPAGSRDVLTD---ALFPPLLTKVRTMEADGGTTVKT 90 Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 L + V++E+V + SR TLCVSSQ GC + C FC TG L RNL+ EI+ Sbjct: 91 LWHLYDQ-----VKVESVLMRYTSRTTLCVSSQAGCGMACPFCATGQLGLTRNLSTAEIV 145 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD----NVKKSLSIA 204 QV A L D IP +++N+V MGMGEPL N+ V+++++ A Sbjct: 146 EQVRQAAKSLADGE---------IPGGPTRLNNLVFMGMGEPLANYKAVIGTVRQAVAPA 196 Query: 205 SDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPL 263 D GL S R IT+ST G VP + ++ +E I V LA+SLHA ++LR+ LVPIN ++ + Sbjct: 197 PD--GLGMSARNITVSTVGLVPAMNKLAKEGIPVTLALSLHAPDDELRSDLVPINTRWSV 254 Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNP 320 + ++DA R Y + RR++ EY ++K +ND A L + L +N IP NP Sbjct: 255 DEVLDAARGYFD-ATGRRVSIEYALIKDMNDHAWRADLLGEKLTARGQGWVHVNPIPLNP 313 Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 PG + S+Q F ++ G + IR RG DI ACGQL + Sbjct: 314 TPGSIWTASEQDVEDEFVARLRGHGIPTTIRDTRGSDIDGACGQLAA 360 >gi|134102464|ref|YP_001108125.1| ribosomal RNA large subunit methyltransferase N [Saccharopolyspora erythraea NRRL 2338] gi|291004145|ref|ZP_06562118.1| ribosomal RNA large subunit methyltransferase N [Saccharopolyspora erythraea NRRL 2338] gi|205829872|sp|A4FMC5|RLMN_SACEN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|133915087|emb|CAM05200.1| predicted Fe-S-cluster redox enzyme [Saccharopolyspora erythraea NRRL 2338] Length = 369 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 119/343 (34%), Positives = 178/343 (51%), Gaps = 24/343 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEIVDEKISCDGTRKWLL 90 R Q+ + R D + M+DI R L +++ P + + TRK L Sbjct: 41 FRARQLAHHYFGRLNADVESMTDIPAGSRAKLGADLLPTLLTP-VRNLDTDEGTTRKTLW 99 Query: 91 RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150 R + +E+V + R T+C+SSQ GC + C FC TG L RNL+ EI+ Q Sbjct: 100 RAHDGTL-----LESVLMRYPDRATVCISSQAGCGMACPFCATGQGGLQRNLSTAEIVDQ 154 Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM-- 208 V A +++ D G V GR +SN+V MGMGEPL N+ V ++ D Sbjct: 155 VRSAAAMMRD--------GEVPGGPGR-LSNVVFMGMGEPLANYKRVINAVHRICDPAPE 205 Query: 209 GLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267 GL S+R +T+ST G VP I R+ E++ V LA+SLH ++LR+ LVP+N ++ +E ++ Sbjct: 206 GLGLSQRSVTVSTVGLVPAIRRMTAEDLHVTLAVSLHTPDDELRDTLVPVNNRWKVEEVL 265 Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK---INLIPFNPWPGC 324 A R Y RR++ EY +++ IND P A L K+L + +NLIP NP PG Sbjct: 266 QAARGYAD-HTGRRVSIEYALIRDINDQPWRADLLGKLLHKHLGQFVHVNLIPLNPTPGS 324 Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 ++ S + F ++ +G +R RG +I AACGQL + Sbjct: 325 KWDASPKPVEREFVRRVREAGVPCTVRDTRGQEIAAACGQLAA 367 >gi|123969217|ref|YP_001010075.1| putative Fe-S-cluster redox protein [Prochlorococcus marinus str. AS9601] gi|205829808|sp|A2BT57|RLMN_PROMS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123199327|gb|ABM70968.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus str. AS9601] Length = 348 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 122/374 (32%), Positives = 182/374 (48%), Gaps = 39/374 (10%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYV--RGIRDFQGMSDISQEVRHLL 64 ++L+G +LE L G R QI+ WIY ++ + + + R L Sbjct: 2 KNLLGSSINDLENVALDYG----QAAFRGRQIYNWIYNYRNKNKNIDQIEVLPLDFREKL 57 Query: 65 N-QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + I + ++ DGT K LL IE V IP + R T C+SSQVG Sbjct: 58 KVDGFKVSELVIKERNLANDGTLKLLLSTE-----DNESIECVGIPTEKRLTACLSSQVG 112 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG + L R+L A EIL Q+L + + RK++NIV Sbjct: 113 CPMDCKFCATGKEGLKRSLKASEILDQILF-----------------IEYEMNRKVTNIV 155 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-------IG 236 MGMGEPL N D + LSI S + S+R+IT+ST I+++ + Sbjct: 156 FMGMGEPLLNIDEL--LLSIRSINNDFQISQRKITVSTVAIPKMISKLSAKSFQILSNCQ 213 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 LAISLHA + R ++P + Y ++ +I+ C+ + RR++FEY+ML G+ND Sbjct: 214 FTLAISLHASNQKTRETIIPSAKNYEIKNIIEDCKTFVR-ETGRRVSFEYLMLSGVNDKL 272 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 A L +LKG +NLI +N E+ + K++ F + +G + +R RGL Sbjct: 273 EHACELSNLLKGFQCHVNLIQYNQIDEVEFQRTSLKNLQLFQSRLVNNGIAVSLRKSRGL 332 Query: 357 DILAACGQLKSLSK 370 D AACGQL+ +K Sbjct: 333 DKNAACGQLRQNAK 346 >gi|323358368|ref|YP_004224764.1| Fe-S-cluster redox enzyme [Microbacterium testaceum StLB037] gi|323274739|dbj|BAJ74884.1| predicted Fe-S-cluster redox enzyme [Microbacterium testaceum StLB037] Length = 442 Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 120/364 (32%), Positives = 183/364 (50%), Gaps = 16/364 (4%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L M E E + ++G+P R Q+ K + D M+D+ R L Sbjct: 72 LADMTAAERVEKVKELGLPG----FRAKQLEKHYFTHYTSDPAEMTDLPASGREEL---V 124 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 + + P ++ E + R ++F + G + +E+V + R TLCVSSQ GC + C Sbjct: 125 AGMLPPLLTEVRRLETDRGDTIKFLWKLHDGAL-VESVLMRYPGRITLCVSSQAGCGMNC 183 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISNIVMMG 186 FC TG L RN++A EI+ Q++ A +L+ G G + V ++SNIV MG Sbjct: 184 PFCATGQAGLTRNMSAAEIIEQIVRANALIAAGGLGGKTLRQAQGPGQVPERVSNIVFMG 243 Query: 187 MGEPLCNFDNVKKSLSIASD-SMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLH 244 MGEPL N+ V +++ + D GL S R IT+ST G VP I ++ E+I V A+SLH Sbjct: 244 MGEPLANYARVMQAVRVMVDKDHGLGMSARGITVSTVGLVPAIKKLADEDIPVTFALSLH 303 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A + LR+ L+P+N ++ ++ +DA R Y RR++ EY ++K +ND A L Sbjct: 304 APDDGLRDELIPVNSRWKVDEALDAARAYFD-KTGRRVSIEYALIKDMNDHAWRADLLAD 362 Query: 305 ILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L +N IP NP PG + S+ F + +G + +R RG +I A Sbjct: 363 KLNARGRGWVHVNPIPLNPTPGSIWTASEVPVQNEFVRRLNDAGIPTTLRDTRGKEIDGA 422 Query: 362 CGQL 365 CGQL Sbjct: 423 CGQL 426 >gi|306820530|ref|ZP_07454163.1| cfr family radical SAM enzyme [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551444|gb|EFM39402.1| cfr family radical SAM enzyme [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 360 Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 114/380 (30%), Positives = 199/380 (52%), Gaps = 41/380 (10%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 +++++ +E + L++ G + R QI+ +Y +GI+ F +++I + ++ + Sbjct: 17 EKNILDYQFDEFQNILIENGFE----KYRAKQIYPLVY-KGIKTFDEINNIPKNLKDFML 71 Query: 66 QHFSI----IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 ++F + IY ++ +K D T+K+L++ I IE V + K + C+SSQ Sbjct: 72 ENFVVNSVSIYEKLQSKK---DYTKKYLMKLEDGNI-----IECVLMKYKFGLSACISSQ 123 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC + C+FC + VR+L++ E++ Q+L + VG KISN Sbjct: 124 VGCLMGCTFCASTVGSKVRDLSSGEMIGQILAMSN-----------------DVGEKISN 166 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLA 240 IV+MG GEP N+ N+ K + L+ R IT+ST G I + ++ + LA Sbjct: 167 IVIMGSGEPFDNYGNLLKFFDLVMSKDTLNIGARHITVSTCGLADKIIDFADRKLQINLA 226 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ISLH + + R+ ++PI+RK+ ++ L+ A +Y +N RR+T+EY ++ +NDS DA Sbjct: 227 ISLHNPNQEKRSQIMPISRKFKIDELMRAVEYYISKTN-RRVTYEYALINEVNDSEEDAK 285 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L++++K INLIP N Y D I F + ++G ++ IR G DI Sbjct: 286 LLVQLVKNQLCHINLIPVNSTEHSNYKKPDNIRIQKFMNILSKNGINATIRREMGTDING 345 Query: 361 ACGQLKSLSKRIPKVPRQEM 380 ACGQL RI + ++++ Sbjct: 346 ACGQL-----RISAISKEKL 360 >gi|25028463|ref|NP_738517.1| hypothetical protein CE1907 [Corynebacterium efficiens YS-314] gi|81749328|sp|Q8FP78|RLMN_COREF RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|23493748|dbj|BAC18717.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length = 369 Score = 172 bits (437), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 116/360 (32%), Positives = 182/360 (50%), Gaps = 31/360 (8%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH-FSIIYP 73 E+ EAL ++G+P + R +QI + Y R D M+D+ + R + F + Sbjct: 27 EQRIEALSELGLP----KFRLNQIARHYYGRLEADPMTMTDLPEAARAKVKDALFPTLME 82 Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133 I + + T+K L + + +E+V + R TLC+SSQ GC + C FC T Sbjct: 83 PIRVVEADDENTQKTLWKLHDGTL-----LESVLMRYPDRATLCISSQAGCGMACPFCAT 137 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 G L RNL+ EI+ QV A + + G ++SNIV MGMGEPL N Sbjct: 138 GQGGLDRNLSVGEIVDQVRNA--------------AATMQAEGGRLSNIVFMGMGEPLAN 183 Query: 194 FDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDL 250 + V ++ G S+R +T+ST G P I ++ E++ V LA+SLH ++L Sbjct: 184 YKRVVSAVRQITQPSPEGFGISQRSVTVSTVGLAPAIRKLADEDMSVTLAVSLHTPDDEL 243 Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK--- 307 R+ LVP+N ++ + ++DA R+Y S RR++ EY +++ +ND A L + L Sbjct: 244 RDELVPVNNRWSVAEVLDAARYYADKS-GRRVSIEYALIRDVNDQGWRADMLGQKLHKAL 302 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 G +NLIP NP PG ++ S ++ F + G +R +G +I AACGQL + Sbjct: 303 GSRVHVNLIPLNPTPGSKWDASPRERQDEFVRRVIAQGVPCTVRDTKGQEIAAACGQLAA 362 >gi|309800813|ref|ZP_07694945.1| 23S rRNA m2A2503 methyltransferase [Bifidobacterium dentium JCVIHMP022] gi|308222349|gb|EFO78629.1| 23S rRNA m2A2503 methyltransferase [Bifidobacterium dentium JCVIHMP022] Length = 407 Score = 172 bits (436), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 123/358 (34%), Positives = 188/358 (52%), Gaps = 33/358 (9%) Query: 23 KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE---K 79 ++G+P R R Q+ Y D + SD R + F +P ++ E + Sbjct: 57 ELGLP----RFRVKQLANHYYGHFDVDAEEFSDFPANKRAEAAEAF---FPTLITEVTRQ 109 Query: 80 ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV 139 ++ +GT ++ R G + IE+V + +R TLC+SSQVGC + C FC TG L Sbjct: 110 VADEGT---TIKTLWRLFDGSL-IESVLMRYPTRTTLCISSQVGCGMGCPFCATGKLGLT 165 Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199 RN++A EI+ QV +A + D G V GR +SNIV MGMGEP+ N+ +V Sbjct: 166 RNMSAGEIVEQVRVAAKAMRD--------GEVAGGPGR-LSNIVFMGMGEPMGNYRSVLS 216 Query: 200 SLS--IASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVP 256 ++ A G S R IT+ST G VP I ++ E I V LA+SLHA S++LR+ LVP Sbjct: 217 AVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVP 276 Query: 257 INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP---AKI 313 +N+++ + ++DA Y L++ RR++ EY +++GIND A L K L A + Sbjct: 277 MNKRFDITQVLDAAHDY-YLASKRRVSIEYALMRGINDQAEHARLLAKRLNHYGDNWAHV 335 Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG---LDILAACGQLKSL 368 N IP NP G ++ S +D F + + + G+ R PR + AACG+ ++ Sbjct: 336 NPIPLNPIEGSKWTASKPEDERRFLDILHQGGHRHLARHPRAGYRWCLRAACGKRTAI 393 >gi|259507523|ref|ZP_05750423.1| Cfr family radical SAM enzyme [Corynebacterium efficiens YS-314] gi|259164908|gb|EEW49462.1| Cfr family radical SAM enzyme [Corynebacterium efficiens YS-314] Length = 354 Score = 172 bits (436), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 116/360 (32%), Positives = 183/360 (50%), Gaps = 31/360 (8%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR-HLLNQHFSIIYP 73 E+ EAL ++G+P + R +QI + Y R D M+D+ + R + + F + Sbjct: 12 EQRIEALSELGLP----KFRLNQIARHYYGRLEADPMTMTDLPEAARAKVKDALFPTLME 67 Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133 I + + T+K L + + +E+V + R TLC+SSQ GC + C FC T Sbjct: 68 PIRVVEADDENTQKTLWKLHDGTL-----LESVLMRYPDRATLCISSQAGCGMACPFCAT 122 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 G L RNL+ EI+ QV A + + G ++SNIV MGMGEPL N Sbjct: 123 GQGGLDRNLSVGEIVDQVRNA--------------AATMQAEGGRLSNIVFMGMGEPLAN 168 Query: 194 FDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDL 250 + V ++ G S+R +T+ST G P I ++ E++ V LA+SLH ++L Sbjct: 169 YKRVVSAVRQITQPSPEGFGISQRSVTVSTVGLAPAIRKLADEDMSVTLAVSLHTPDDEL 228 Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK--- 307 R+ LVP+N ++ + ++DA R+Y S RR++ EY +++ +ND A L + L Sbjct: 229 RDELVPVNNRWSVAEVLDAARYYADKS-GRRVSIEYALIRDVNDQGWRADMLGQKLHKAL 287 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 G +NLIP NP PG ++ S ++ F + G +R +G +I AACGQL + Sbjct: 288 GSRVHVNLIPLNPTPGSKWDASPRERQDEFVRRVIAQGVPCTVRDTKGQEIAAACGQLAA 347 >gi|212694595|ref|ZP_03302723.1| hypothetical protein BACDOR_04123 [Bacteroides dorei DSM 17855] gi|212663096|gb|EEB23670.1| hypothetical protein BACDOR_04123 [Bacteroides dorei DSM 17855] Length = 273 Score = 172 bits (436), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 100/289 (34%), Positives = 150/289 (51%), Gaps = 29/289 (10%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G +E+++ + +G+P + QI W+Y + + M+++S + R L Sbjct: 5 KTALLGRTLDEIQQIVRNLGMP----KFAAKQITSWLYDKKVETIDEMTNLSLKHRETLK 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + + V+E S DGT K+L R PA IE VYIP++ R TLCVSSQVGC Sbjct: 61 EGYEVGASAPVEEMRSVDGTVKYLFRTPAHNF-----IEAVYIPDEDRATLCVSSQVGCK 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q NL+A +IL Q+ IP K++N+V M Sbjct: 116 MNCKFCMTGKQGFTANLSAHQILNQIY------------------SIPE-REKLTNLVFM 156 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEP N D V K L I + G +S +RIT+S+ G + R E LAIS+H Sbjct: 157 GMGEPFDNLDEVLKVLEILTSEYGYGWSPKRITVSSVGLKKGLERFLNESDCHLAISMHT 216 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 R L+P + + + +ID +Y S RR++FEY++ KG+N+ Sbjct: 217 PIPSQRRDLMPAEKAFSITEIIDILHNY-DFSKQRRLSFEYIVFKGVNE 264 >gi|317125387|ref|YP_004099499.1| 23S rRNA m(2)A-2503 methyltransferase [Intrasporangium calvum DSM 43043] gi|315589475|gb|ADU48772.1| 23S rRNA m(2)A-2503 methyltransferase [Intrasporangium calvum DSM 43043] Length = 393 Score = 172 bits (436), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 119/350 (34%), Positives = 178/350 (50%), Gaps = 21/350 (6%) Query: 30 HVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR-HLLNQHFSIIYPEIVDEKISCDGTRKW 88 H R Q+ + R + D + M+D+ + VR L+ + IV + T K+ Sbjct: 54 HQGFRARQLSTHYFERLVDDPEQMTDLPKAVRADLVRDLLPPLLAPIVRRQADDGQTMKY 113 Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 R I +E+V + +R T+C+SSQ GC + C FC TG L RN++ EI+ Sbjct: 114 AWRLHDGAI-----VESVLMRYPNRVTICISSQAGCGMNCPFCATGQAGLTRNMSTAEIV 168 Query: 149 LQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD 206 QV+ A L G+ G +D + ++SN+V MGMGE L N+ ++ +D Sbjct: 169 EQVVWAARALRTGELAGGQDGDR----EHPLRVSNVVFMGMGEALANYGAAIGAIRRLTD 224 Query: 207 SM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPL 263 GL S R IT+ST G VP I ++ E I V LA+SLHA ++LR+ LVPIN ++ + Sbjct: 225 PAPDGLGISARGITMSTVGLVPAIDKLAAEGIPVTLALSLHAPDDELRDELVPINTRWKV 284 Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL----KGIPAKINLIPFN 319 + IDA Y + RR++ EY +++ IND A L + L +G +N IP N Sbjct: 285 DEAIDAAHRY-YETTGRRVSIEYALIRDINDQGWRADLLAQKLNRRGRGW-VHVNPIPLN 342 Query: 320 PWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369 P PG ++ S F E ++ G + IR RG DI ACGQL + + Sbjct: 343 PTPGSKWTASRPGVEQNFVERLRAHGIPTTIRDTRGQDIDGACGQLAAAT 392 >gi|269219614|ref|ZP_06163468.1| radical SAM enzyme, Cfr family [Actinomyces sp. oral taxon 848 str. F0332] gi|269210856|gb|EEZ77196.1| radical SAM enzyme, Cfr family [Actinomyces sp. oral taxon 848 str. F0332] Length = 404 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 125/373 (33%), Positives = 183/373 (49%), Gaps = 37/373 (9%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 E L + E ++ + K G P R Q+ + + D + M+D+ R L Sbjct: 24 EHLADLDVAERKDRVAKAGFPA----FRADQLSRHYFEHFDVDPERMTDLPARGREEL-- 77 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 S P ++ + R ++ R G + +ETV + R TLC+SSQ GC + Sbjct: 78 -VSTFLPPLLTKVRDLTADRGLTIKSLWRMFDGAM-VETVLMKYPDRATLCISSQAGCGM 135 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQV-----LLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 C FC TG L RNL+A EI+ QV AR LG+ C +++N Sbjct: 136 ACPFCATGQGGLTRNLSAGEIVEQVRCGMLAAARGDLGE--PC-------------RLTN 180 Query: 182 IVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238 +V MGMGEPL N+ V K+L I G S R +T+ST G P I ++ E+ + V Sbjct: 181 VVFMGMGEPLANWKQVLKALRRIIEPSPAGFGLSARNVTVSTVGMAPLIEKLAEQGMPVT 240 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LAISLHA ++LR+ L+PIN ++ + L+DA R Y RR++ EY +++ +ND Sbjct: 241 LAISLHAPDDELRDPLIPINSRFNVGRLLDAARSY-FAKTGRRVSVEYALIRDMNDHKWR 299 Query: 299 ALNLIKIL----KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 A L L +G A +N IP NP PG + S + TF + + +G + IR R Sbjct: 300 AQLLADELNRRGRGW-AHVNPIPLNPTPGSIWTASTPEAQNTFVQTLLDAGIPTTIRDTR 358 Query: 355 GLDILAACGQLKS 367 G DI ACGQL + Sbjct: 359 GSDIDGACGQLAA 371 >gi|325971942|ref|YP_004248133.1| radical SAM enzyme, Cfr family [Spirochaeta sp. Buddy] gi|324027180|gb|ADY13939.1| radical SAM enzyme, Cfr family [Spirochaeta sp. Buddy] Length = 361 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 110/330 (33%), Positives = 167/330 (50%), Gaps = 23/330 (6%) Query: 37 QIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARC 96 QI+ W+ V+G+ F+ M+D+ + R L S + +CD + R Sbjct: 33 QIFNWL-VKGVYSFEAMTDLPKAERERLASLMSSACSSTIH---TCDTDETGATKMGVRL 88 Query: 97 IGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARS 156 G V + + +K R T C+SSQVGC+ C+FC TGT L+RNL+AEEI+ Q + Sbjct: 89 HDGKVIECVLLVDKKGRHTACLSSQVGCAQGCTFCKTGTMGLLRNLSAEEIIEQYI---- 144 Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216 ++ + I++IV MGMGEPL N V +S+ + + S RR Sbjct: 145 -------------HLLSVSKQPITHIVYMGMGEPLANIAAVTRSIRYFHNPKTFNLSLRR 191 Query: 217 ITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275 IT+ST G VP I ++ E+ + V LA+SL + N LR+ ++P+N+ + + L A HY Sbjct: 192 ITVSTCGIVPGILKLAEQKLPVKLAVSLVSADNRLRDRIMPVNKAWDIMALKKALLHYQR 251 Query: 276 LSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIV 335 L +R T EY +L N A L +K + +NLIP+NP G Y +++I Sbjct: 252 LG-GKRFTIEYCLLGNTNTDETSAKKLASYVKDLDVIVNLIPWNPAEGLPYKTPTEEEID 310 Query: 336 TFSECIKRSGYSSPIRTPRGLDILAACGQL 365 F+ + R + R RG +I ACGQL Sbjct: 311 YFALQLDRLHVNYTRRRSRGREINGACGQL 340 >gi|312898699|ref|ZP_07758089.1| radical SAM enzyme, Cfr family [Megasphaera micronuciformis F0359] gi|310620618|gb|EFQ04188.1| radical SAM enzyme, Cfr family [Megasphaera micronuciformis F0359] Length = 341 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 111/361 (30%), Positives = 183/361 (50%), Gaps = 29/361 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 + + + +L++ L++ GI + R QI+ +IY I + M + ++ R +L Sbjct: 3 DIFSITKGQLQDILVEAGIK----KFRADQIFHYIYKENIWSWNEMVLLPKKDREILKGL 58 Query: 68 FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I PE+ D ++S D T K LLR + +ETV + ++C+SSQVGC++ Sbjct: 59 LPIYIPEVADRQVSEDKETVKLLLR-----LQDGQTVETVLMKHDYGNSVCLSSQVGCAV 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC + VRNLT E+ Q++ R V ++ ++V+MG Sbjct: 114 NCAFCASAKNGFVRNLTIGEMTAQLMAFRKY-----------------VTSELHSVVLMG 156 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 GEPL N+DNV + + + L R ITLSTSG VP + R+ EE I + LA+SLHA Sbjct: 157 TGEPLLNYDNVLAFIRLIHEKDTLYLGYRNITLSTSGIVPAVYRLAEEGIPLNLAVSLHA 216 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ +R ++PI ++ + ++ A + Y R++TFEY+++K +N S A L ++ Sbjct: 217 PNDRIRKKIMPIAERFDFDSVVQAAQTYFE-KTGRKVTFEYILIKDVNISDACASQLAQL 275 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +NLIP N + F +KR G ++ +R G +I AACGQL Sbjct: 276 FSHKNVLLNLIPINDNYDVGLYRPSATESERFLTYLKRKGVNATLRREMGSNIQAACGQL 335 Query: 366 K 366 + Sbjct: 336 R 336 >gi|84498390|ref|ZP_00997187.1| hypothetical protein JNB_19923 [Janibacter sp. HTCC2649] gi|84381890|gb|EAP97773.1| hypothetical protein JNB_19923 [Janibacter sp. HTCC2649] Length = 392 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 123/365 (33%), Positives = 181/365 (49%), Gaps = 34/365 (9%) Query: 30 HVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWL 89 H R Q+ + R + + M+D+ + VR L + + P ++ + + R Sbjct: 36 HKGFRAKQLSTHYFERLVESPEDMTDLPKAVRDDL---VADLLPTLLTPVRTLEADRGAT 92 Query: 90 LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149 L+ R G + +E+V + R T+C+SSQ GC + C FC TG L RN++A EI+ Sbjct: 93 LKSVWRLHDGAL-VESVLMRYPKRVTICISSQAGCGMNCPFCATGQAGLTRNMSAAEIVE 151 Query: 150 QVL------------------LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191 QV+ A + LGD ED V P ++SN+V MGMGE L Sbjct: 152 QVVDANRKLRHGALPAIGATHPAEAGLGDEAEDEDAATKVGPE---RVSNVVFMGMGEAL 208 Query: 192 CNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248 N+ ++ +D GL S R IT+ST G VP I ++ E I V LA+SLHA + Sbjct: 209 ANYKAAIGAIRRLTDPTPDGLGMSARGITMSTVGLVPAIDKLAAEGIPVTLALSLHAPDD 268 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL-- 306 +LR+ LVPIN ++ ++ IDA Y + RR++ EY ++K IND A L K L Sbjct: 269 ELRDELVPINTRWKVDEAIDAAYRY-FEATGRRVSIEYALIKDINDQAWRADLLGKKLTA 327 Query: 307 --KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 KG +N IP NP PG ++ S F E ++ G + +R RG DI ACGQ Sbjct: 328 RGKGW-VHVNPIPLNPTPGSKWTASRPGVEQQFVERLRAYGIPTTVRDTRGSDIDGACGQ 386 Query: 365 LKSLS 369 L + + Sbjct: 387 LAAAT 391 >gi|325192828|emb|CCA27229.1| hypothetical protein SELMODRAFT_122498 [Albugo laibachii Nc14] Length = 424 Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 112/337 (33%), Positives = 175/337 (51%), Gaps = 31/337 (9%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 + IW+ F + ++ ++ L ++F++ + +++IS DGT K L F Sbjct: 31 IHAQAIWREFSHNINHSFHEIPNLPLRLQQSLRENFTVCTLSLSEKQISKDGTIKLL--F 88 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + G +E+V + K R LCVSSQVGC + C+FC TGT ++ +L + EIL Q+ Sbjct: 89 KTQDGHG---VESVIMKHKGRNMLCVSSQVGCQMGCTFCATGTMGIIADLCSGEILEQLA 145 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A + +I N+V MGMGEPL N+D V ++ + GL+ Sbjct: 146 FANTFA-------------------RIRNVVFMGMGEPLQNYDEVIAAIKAMTSVFGLA- 185 Query: 213 SKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 + +TLST G + I ++ ++ V LA+SLHA + +LR+ +VP ++ +PLE L+ A Sbjct: 186 -PKHVTLSTVGVIHRIQQLNRDVPLVRLALSLHAPTQELRSQIVPSSKAFPLEKLMQAID 244 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP-GCEYLCSD 330 + R + EY MLKGINDS A L K+L+ INLIP+N ++ Sbjct: 245 DHLASREHRVVLIEYCMLKGINDSIETAHLLGKLLQDRSVHINLIPYNTTDVDAQFSSPS 304 Query: 331 QKDIVTFSECIKRSGYS--SPIRTPRGLDILAACGQL 365 +DI F + I R Y+ + +R G+DI ACGQL Sbjct: 305 DQDIRNF-QSILRQDYNLKATVRENHGMDIEGACGQL 340 >gi|301059158|ref|ZP_07200099.1| 23S rRNA m2A2503 methyltransferase [delta proteobacterium NaphS2] gi|300446738|gb|EFK10562.1| 23S rRNA m2A2503 methyltransferase [delta proteobacterium NaphS2] Length = 345 Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 108/311 (34%), Positives = 164/311 (52%), Gaps = 26/311 (8%) Query: 57 SQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTL 116 SQ +R L Q + P V ++I DG L++F + G +E+V +P ++ T+ Sbjct: 51 SQGLRDRLRQDWCF-EPGRVKDEIHEDG----LIKFVTELVDGH-RVESVILPLRTHQTV 104 Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176 C+SSQVGC + C FC TG L R+L+ EE++ QV AR G Sbjct: 105 CISSQVGCRMGCRFCETGKLGLARSLSVEEMVGQVYQARH-----------------EFG 147 Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG--EE 234 R I N+V MGMGEP NF+NV +++ + SD GL ++RRITLST+G + I ++ Sbjct: 148 RSIRNVVFMGMGEPFDNFENVIQAVRVMSDQRGLDIAQRRITLSTAGRIDGIRKLAALNM 207 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 + L +SL+A ++ LR L+P++ K L +L YP L + + YV++ +ND Sbjct: 208 PSLNLTVSLNAPNDQLRQRLMPLHDKGSLALLQKTLMAYP-LKKGKVLNVAYVLISHVND 266 Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 L + LK + A++NLIP+N + Q D F E + G + R PR Sbjct: 267 QGEHVQQLAEWLKPLRARVNLIPYNSIKDSLFQPPRQGDTDLFREKLIELGVNVQKRIPR 326 Query: 355 GLDILAACGQL 365 G +++AACGQL Sbjct: 327 GRELMAACGQL 337 >gi|308178831|ref|YP_003918237.1| radical SAM enzyme [Arthrobacter arilaitensis Re117] gi|307746294|emb|CBT77266.1| radical SAM enzyme [Arthrobacter arilaitensis Re117] Length = 377 Score = 170 bits (430), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 114/358 (31%), Positives = 182/358 (50%), Gaps = 21/358 (5%) Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75 E + L ++G+P R Q+ + D + MSD+ +E R L + ++P++ Sbjct: 31 ERQAKLKELGLPA----FRAKQLSVHYFQHYTTDPEKMSDLPKERRAELAE---AMFPKL 83 Query: 76 VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135 + E + ++F R G + +E+V + R TLC+SSQ GC + C FC TG Sbjct: 84 LTEVKRLETDDGKTIKFLWRLFDGSL-VESVLMRYPGRITLCISSQCGCGMNCPFCATGQ 142 Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195 L RN++ EIL Q++ A ++ + + G P ++ NIV MGMGEPL N+ Sbjct: 143 AGLTRNMSTAEILDQIVQANRVIAE----GGLGGRQHPD--ERVGNIVFMGMGEPLANYK 196 Query: 196 NVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252 V ++ +A GL + R IT+ST G VP I ++ EE + V A+SLHA ++LR+ Sbjct: 197 RVMNAVHRMVADTPEGLGMAARGITVSTVGLVPAIRKLTEENVQVTFALSLHAPDDELRD 256 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP-- 310 L+P+N ++ ++ +DA Y + RR++ EY ++K +ND A L K L Sbjct: 257 ELIPVNSRWKVDEALDAAYDY-YVKTGRRVSIEYALIKDMNDHEWRAEMLAKKLNARGRG 315 Query: 311 -AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 +N IP NP PG + S+ F + G + +R RG +I ACGQL + Sbjct: 316 WVHVNPIPLNPVPGSIWTRSEPDITSKFVRRLDELGVPTTLRDTRGKEIDGACGQLAA 373 >gi|291530132|emb|CBK95717.1| radical SAM enzyme, Cfr family [Eubacterium siraeum 70/3] Length = 345 Score = 170 bits (430), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 107/335 (31%), Positives = 179/335 (53%), Gaps = 29/335 (8%) Query: 36 SQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPAR 95 + I++ IY R F M+ S +++ LL+ + +I DE + T K+L Sbjct: 27 ANIFRDIYKRKATGFNEMTLTSADIKALLSDKYFFGKLKI-DEILQSVDTSKYLFELSDG 85 Query: 96 CIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR 155 C +ETV + +K ++C+S+Q GC++ C FC +G + R+LTA E++ Q+L Sbjct: 86 C-----RVETVLMRQKFGNSICISTQSGCNMGCKFCCSGRLRKQRDLTAGEMVSQILTV- 139 Query: 156 SLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR 215 E + + I SNI +MG+GEP N+D + L I + G+ + Sbjct: 140 ---------EKYQNITI-------SNITVMGIGEPFDNYDALCDFLDIVTVPGGIEIGTK 183 Query: 216 RITLSTSGFVPN---IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 IT+ST G A+ E LA+SLHA +++RN L+PINR+Y + +I++ ++ Sbjct: 184 HITVSTCGLCDKTELFAKRKEPCN--LAVSLHAPDDEIRNRLMPINRRYSISQVIESAKY 241 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y +N R++ EY++L GINDS +A L ++ +NLIP+NP P E+ S ++ Sbjct: 242 YVERTN-RKVLLEYILLDGINDSRENARQLAALIGNARLFVNLIPYNPSPDSEFKRSSEE 300 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 +I F + +K++ + R G ++ AACGQL+S Sbjct: 301 NITAFYDELKKNRINVTRRKEFGTELSAACGQLRS 335 >gi|159483801|ref|XP_001699949.1| hypothetical protein CHLREDRAFT_97359 [Chlamydomonas reinhardtii] gi|158281891|gb|EDP07645.1| predicted protein [Chlamydomonas reinhardtii] Length = 368 Score = 170 bits (430), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 120/372 (32%), Positives = 178/372 (47%), Gaps = 45/372 (12%) Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIY--VRGIRDFQGMSDISQEVRHLLNQHFSIIYP 73 ELEE +G P + R Q+++W+Y + IR+ + Sbjct: 11 ELEEWCASVGEPPK----RAKQLYRWLYGNRKWIRNLDQADSDASAFSGAFKAKVLAGGL 66 Query: 74 EIVDEKISCDGTRKWLLRFPARCIGG--PV-----EIETVYIP------EKSRGTLCVSS 120 ++ + DGTRK + GG P +ETV IP + R T C+S+ Sbjct: 67 QLQSVHTARDGTRKLVFALVGDWEGGDGPAGSARGTVETVLIPMTNRQGQNLRYTACLST 126 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC++ C FCYTG L+ NL+ +I+ QV+ AR L + + + IP I+ Sbjct: 127 QVGCAMNCQFCYTGRMGLLGNLSTAQIVEQVVEARRYLAE-------QEVQIP-----IA 174 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 NIV MGMGEPL N+D V ++ I + GL S+ +I +ST G VP + R LA Sbjct: 175 NIVFMGMGEPLHNYDAVMSAIEILA--TGLELSRNKIIVSTVGLVPEMRRFIASGRAKLA 232 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRH---YPGLSNARRITFEYVMLKGINDSPR 297 + R+ +VP NR+YPL+ L+ A R Y + EYV+L G+ND+ Sbjct: 233 V---------RDWIVPTNRRYPLDQLLGALREAFPYGKRKGDDFVVIEYVLLAGVNDTLA 283 Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 DA L+ + I +NLI FNP G ++ S D+ F +G +R +G D Sbjct: 284 DAERLLALTSDIYCLVNLIVFNPHDGTQFKRSSDDDVRAFRAVFLAAGRPCTVRASKGDD 343 Query: 358 ILAACGQLKSLS 369 +AACGQL ++ Sbjct: 344 EMAACGQLGDVN 355 >gi|289803429|ref|ZP_06534058.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 182 Score = 169 bits (429), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 92/188 (48%), Positives = 116/188 (61%), Gaps = 12/188 (6%) Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168 PE R TLCVSSQVGC+L C FC T Q RNL EI+ QV A ++G + Sbjct: 1 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----AAKVT 56 Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228 G R I+N+VMMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + Sbjct: 57 GQ------RPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPAL 110 Query: 229 ARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEY 286 ++G+ I V LAISLHA ++ +R+ +VPIN+KY +E + A R Y SNA R+T EY Sbjct: 111 DKLGDMIDVALAISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEY 170 Query: 287 VMLKGIND 294 VML +ND Sbjct: 171 VMLDHVND 178 >gi|308804299|ref|XP_003079462.1| radical SAM domain-containing protein-like (ISS) [Ostreococcus tauri] gi|116057917|emb|CAL54120.1| radical SAM domain-containing protein-like (ISS) [Ostreococcus tauri] Length = 385 Score = 169 bits (429), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 108/287 (37%), Positives = 157/287 (54%), Gaps = 36/287 (12%) Query: 99 GPVEIETVYIP----EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLA 154 G ++ET++ +K+R T CVSSQVGC++ CSFC TG Q RNL+A EI+ QVL Sbjct: 115 GRADVETMFRGVDGWDKNRLTACVSSQVGCAMKCSFCATGLQGFKRNLSASEIVSQVLEL 174 Query: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSK 214 L G+++S++V MGMGEP+ N V ++ ++ +G+ Sbjct: 175 EELY-----------------GKRVSDVVFMGMGEPMLNMKAVVGAIRCLNEDIGI--GG 215 Query: 215 RRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY 273 R IT+ST G ++A++ E++ LAISLHA + R +VP + YP E L+D + Y Sbjct: 216 RHITVSTVGIPNSLAKLAKEKLQATLAISLHAPDQETRLRIVPSAKHYPYEDLLDDVKMY 275 Query: 274 PGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIPAKINLIPFNPWPGCEYLCSD 330 RR+TFEY +L G+NDSP A L +ILK G A +N+IP+N G +++ Sbjct: 276 F-RETGRRVTFEYTLLAGVNDSPSQAQALSRILKRKFGAGAHLNVIPWNSIEGVDHVKPS 334 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL------KSLSKR 371 + + F C G S IR RG D+ AACG L +SL +R Sbjct: 335 RNAVHRF--CGALGGISHTIRRTRGDDVSAACGMLTGDFERRSLGRR 379 >gi|326434869|gb|EGD80439.1| radical SAM domain-containing protein [Salpingoeca sp. ATCC 50818] Length = 517 Score = 169 bits (428), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 119/382 (31%), Positives = 188/382 (49%), Gaps = 53/382 (13%) Query: 19 EALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE 78 E K+GI +H ++W+ I RG+ D + + ++ + + L+ + F I ++ Sbjct: 22 EECTKLGINHKHA----YKMWRHIIARGVTDVEEIPELPKALYKLVKEKFVITTSKLESF 77 Query: 79 KISCD-GTRKWLLRFPARCI-------GGPVEI--------------ETVYIPEKSRGTL 116 K S D T K L+R + G VE+ ETV+ K R T+ Sbjct: 78 KTSADESTTKLLIRLQDGALVETVIMRYGRVELRNFPSDRQRRTEDGETVF-ASKERATV 136 Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176 CVSSQVGC + C+FC TGT L+ NLTA EIL Q+ A ++ Sbjct: 137 CVSSQVGCKMGCTFCATGTMGLLSNLTAGEILEQLYHANTV------------------- 177 Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI- 235 KI N+V MGMGEPL N+D V ++ +D S S RI +ST G VP + ++ E+I Sbjct: 178 EKIRNVVFMGMGEPLDNYDAVVMAVRGMTDVQRFSLSPSRIAVSTVGVVPKMLKMAEDIP 237 Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY-----PGLSNARRITFEYVMLK 290 V LA+SLHA + +LR +VP + + ++ ++ A ++ S + EYV++ Sbjct: 238 QVGLALSLHAPTQELRAQIVPTAKAWHIDRIMAAMDNFIEHRSQVASRKSHVLIEYVLID 297 Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWP-GCEYLCSDQKDIVTFSECIKRSGYSSP 349 +N S A L ++L+G +N+IP+NP +Y + + F+ ++ + Sbjct: 298 NVNSSEEVAHQLGRLLEGREVILNVIPYNPTDVPHDYKAPSSETLEKFNAVLREYDLRTI 357 Query: 350 IRTPRGLDILAACGQLKSLSKR 371 +R G D+ AACGQL S+R Sbjct: 358 VRQELGQDVNAACGQLVISSQR 379 >gi|45658616|ref|YP_002702.1| ribosomal RNA large subunit methyltransferase N [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|81406814|sp|Q72NP7|RLMN_LEPIC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|45601860|gb|AAS71339.1| conserved hypothetical protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 353 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 124/374 (33%), Positives = 183/374 (48%), Gaps = 35/374 (9%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 N +K L G +EL E ++ +G R QI+ +YV + + S+ + Sbjct: 9 NQTEKIPLKGRTLKELSEIMITLG----EKPFRAKQIYHGLYVNRYETWDQFTTFSKIFK 64 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP--EKSRGTLCVS 119 L + S+ + ++V + S DGT+K+ + G E E V+IP + R T+C+S Sbjct: 65 EKLEELCSLTHLQVVKQLKSVDGTQKFTFTSES---GNGKEFEAVWIPSGDGGRKTICIS 121 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 SQ+GC+L C FC T + NL A EI+ Q+L ++GD K Sbjct: 122 SQIGCTLNCKFCATAKLEFQGNLKAHEIVDQILQVEKIVGD-----------------KA 164 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VM 238 +N+V MGMGEPL N+ NV ++ SI D L+ +RIT+STSG V I R E Sbjct: 165 TNVVFMGMGEPLHNYFNVIRAASIFHDPDALNLGAKRITISTSGVVNGIRRFIENKEPYN 224 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 AISL+ R ++ I K+ L L+ A + + RRITFEYVM+ G+N + Sbjct: 225 FAISLNHPDPKGRLQIMDIEEKFSLPELLQAAKDFT-RELKRRITFEYVMIPGVNMGFEN 283 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLC---SDQKDIVTFSECIKRSGYSSPIRTPRG 355 A L+KI K + KIN+IP N E+ +++I F ++ +G R G Sbjct: 284 ANKLVKIAKSLDCKINVIPLN----TEFFGWRRPTREEIAEFIALLEPAGVPILNRRSPG 339 Query: 356 LDILAACGQLKSLS 369 DI ACG L S S Sbjct: 340 KDIFGACGMLASKS 353 >gi|162449851|ref|YP_001612218.1| hypothetical protein sce1580 [Sorangium cellulosum 'So ce 56'] gi|205829637|sp|A9FD89|Y1580_SORC5 RecName: Full=Probable RNA methyltransferase sce1580 gi|161160433|emb|CAN91738.1| hypothetical protein sce1580 [Sorangium cellulosum 'So ce 56'] Length = 398 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 101/297 (34%), Positives = 149/297 (50%), Gaps = 20/297 (6%) Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133 EI + + D T + +LR G IE+V IP +R TLCVSSQVGC+ CSFC T Sbjct: 115 EIAERAPAQDDTLRLVLR-----AGDGALIESVLIPGPARTTLCVSSQVGCARACSFCET 169 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 G L R L A EI+ QV +AR+L + G + N+V MGMGEP N Sbjct: 170 GRLGLERQLAAGEIVDQVRIARALAAERGGA-------------PLRNLVFMGMGEPFDN 216 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNI 253 V K++ + +D F+ +T+ST G I + LA+SL+A + R Sbjct: 217 LGEVLKAIRLLTDPRAFRFAPSHVTVSTVGVADKIEPFFRDARAELAVSLNAPDDARRQA 276 Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313 ++P+N ++ + L +A L RR+ FEYV+ ND+P DA L + G+ ++ Sbjct: 277 IMPVNARFSMAALKEAIAR--ALPPGRRVLFEYVLFDRFNDAPEDADLLAAYVAGLRCRV 334 Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 N+IP NP P + F + G ++ +R PRG D+ ACGQL +++ Sbjct: 335 NVIPCNPGPDPALRPPSAARLDAFVARLSGHGVTTLVRRPRGRDVGGACGQLAGMAR 391 >gi|183220754|ref|YP_001838750.1| ribosomal RNA large subunit methyltransferase N [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910855|ref|YP_001962410.1| ribosomal RNA large subunit methyltransferase N [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|205829783|sp|B0SGA8|RLMN_LEPBA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829784|sp|B0SPQ8|RLMN_LEPBP RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|167775531|gb|ABZ93832.1| Fe-S-cluster redox enzyme [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779176|gb|ABZ97474.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 353 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 130/369 (35%), Positives = 186/369 (50%), Gaps = 46/369 (12%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L G ++ELEE + +G+ + R +QI+ IY + +S+EVR L +H Sbjct: 8 LKGKTKKELEEICVSLGLE----KYRAAQIYTGIYKSRYTTIDQFTTLSKEVREKLKEHT 63 Query: 69 SIIYPEIV---DEKISCDGTRKWLLRFPARCIGGPVEIETVYIP--EKSRGTLCVSSQVG 123 YPEI D DGTRK+ +G EIE V+IP + R T+C+SSQ+G Sbjct: 64 Q--YPEIEIGRDLVSKEDGTRKFTF-----YVGENKEIEAVWIPSGDGGRKTICISSQIG 116 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L C FC TG + NL +IL QVL L+GD + +NIV Sbjct: 117 CTLNCKFCATGLLEYKGNLQTWQILDQVLQVERLVGD-----------------RATNIV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAIS 242 MGMGEP+ N+ +V K+ I D RIT+ST+G I R E AIS Sbjct: 160 FMGMGEPMHNYFSVMKAAHILRDKDAFGLGALRITISTAGVTTGINRFIENKEPFNFAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 L+ + + R+ ++ +N K+PLE LID+ + + + R ITFEYVM+ +N +A L Sbjct: 220 LNHPNPNARSSVMDVNDKHPLEKLIDSAKRFTKELD-RAITFEYVMIPDVNMGRDNAERL 278 Query: 303 IKILKGI-PAKINLIPFNP-WPGCEYLCSDQ-KDIVTFSECIKRSGYSSPI---RTPRGL 356 KI + + KIN+IP N + G D+ KD V ++ ++PI R+P G Sbjct: 279 AKIARSVNKCKINVIPLNTDFTGWRRPTDDEVKDFVMHL----KAKTTAPILNRRSP-GR 333 Query: 357 DILAACGQL 365 DI ACG L Sbjct: 334 DINGACGML 342 >gi|282895427|ref|ZP_06303564.1| Putative uncharacterized protein [Raphidiopsis brookii D9] gi|281199460|gb|EFA74323.1| Putative uncharacterized protein [Raphidiopsis brookii D9] Length = 300 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 105/286 (36%), Positives = 153/286 (53%), Gaps = 27/286 (9%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93 R Q+ WIY G+ +S + R + SI + + + DGT K+LL Sbjct: 41 RGKQLHNWIYHHGVHRISDISVFPKTWREQVTD-VSIGRSSVNYQCSATDGTVKYLLNLA 99 Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153 I IETV IP R T+CVS+QVGC + C FC TG RNL EI+ QVL Sbjct: 100 DGEI-----IETVGIPSDKRLTVCVSTQVGCPMACDFCATGKGGFKRNLNRGEIVDQVLT 154 Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213 + ED + +++S++V MGMGEPL N +NV +L + +G+ Sbjct: 155 VQ---------EDFQ--------QRVSHVVFMGMGEPLLNTENVILALKCLNQDLGI--G 195 Query: 214 KRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 +R +T+ST G I ++ E + V LA+SLHA + LR ++P + YP+E L+ CR Sbjct: 196 QRSLTVSTVGIRDRIRQLAEHHLQVTLAVSLHAPNQILREQIIPSAKTYPIEQLLAECRQ 255 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318 Y ++ RR+TFEY++L G+ND P AL L + L+G + +NLIP Sbjct: 256 YVEIT-GRRVTFEYILLSGVNDLPEQALELSQRLRGFQSHVNLIPL 300 >gi|145347191|ref|XP_001418058.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144578286|gb|ABO96351.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 369 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 122/354 (34%), Positives = 177/354 (50%), Gaps = 42/354 (11%) Query: 34 RTSQIWKWIY-VRGIRDFQGMSDISQEVRH-LLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R +QI + +Y R R + S I +E+R L+ + + +S GT K LR Sbjct: 35 RATQIREHLYGARRCRRIEDFSLIPREMRDALVAGGYRTGRLAVESASVSGCGTGKVSLR 94 Query: 92 FPARCIGGPVEIETVYIPEKS----------RGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141 R + IE V IP+ S R T CVSSQVGC++ C+FC TG Q RN Sbjct: 95 VGEREV-----IEAVGIPDASCWRASAEAENRLTACVSSQVGCAMKCTFCATGMQGYKRN 149 Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 LT EI QV+ L G+++S +V MGMGEP+ N +V +++ Sbjct: 150 LTPAEITAQVIELEELY-----------------GKRVSQVVFMGMGEPMLNIKSVVQAI 192 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRK 260 ++ +G+ R IT+ST G ++ ++ E++ + LAISLHA R +VP + Sbjct: 193 RCLNEDVGI--GGRHITVSTVGIPNSLKKLAKEKLAITLAISLHAPDQHTRAKIVPSAKY 250 Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIPAKINLIP 317 YP+E L++ R Y RR+TFEY +L G+NDSP A L ++LK G A +N+IP Sbjct: 251 YPMEDLLNDARAYFK-ETGRRVTFEYTLLAGVNDSPSQAKALSRMLKRKFGTGAHVNIIP 309 Query: 318 FNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 +N G + I F ++ G + IR RGLD AACG L +R Sbjct: 310 WNNIDGINHTRPSGNAIHRFCAQLE-GGVTHTIRRTRGLDTNAACGMLTGAFER 362 >gi|24213541|ref|NP_711022.1| ribosomal RNA large subunit methyltransferase N [Leptospira interrogans serovar Lai str. 56601] gi|81589793|sp|Q8F7V1|RLMN_LEPIN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|24194325|gb|AAN48040.1| predicted Fe-S-cluster redox enzyme [Leptospira interrogans serovar Lai str. 56601] Length = 353 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 123/374 (32%), Positives = 182/374 (48%), Gaps = 35/374 (9%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 N +K L G +EL E ++ +G R QI+ +YV + + S+ + Sbjct: 9 NQTEKIPLKGRTLKELSEIMITLG----EKPFRAKQIYHGLYVNRYETWDQFTTFSKIFK 64 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP--EKSRGTLCVS 119 L + S+ + ++V + S DGT+K+ + G E E V+IP + R T+C+S Sbjct: 65 EKLEELCSLTHLQVVKQLKSVDGTQKFTFTSES---GNGKEFEAVWIPSGDGGRKTICIS 121 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 SQ+GC+L C FC T + NL A EI+ Q+L ++GD K Sbjct: 122 SQIGCTLNCKFCATAKLEFQGNLKAHEIVDQILQVEKIVGD-----------------KA 164 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VM 238 +N+V MGMGEPL N+ NV ++ SI D + +RIT+STSG V I R E Sbjct: 165 TNVVFMGMGEPLHNYFNVIRAASIFHDPDAFNLGAKRITISTSGVVNGIRRFIENKEPYN 224 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 AISL+ R ++ I K+ L L+ A + + RRITFEYVM+ G+N + Sbjct: 225 FAISLNHPDPKGRLQIMDIEEKFSLPELLQAAKDFT-RELKRRITFEYVMIPGVNMGFEN 283 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLC---SDQKDIVTFSECIKRSGYSSPIRTPRG 355 A L+KI K + KIN+IP N E+ +++I F ++ +G R G Sbjct: 284 ANKLVKIAKSLDCKINVIPLN----TEFFGWRRPTREEIAEFIALLEPAGVPILNRRSPG 339 Query: 356 LDILAACGQLKSLS 369 DI ACG L S S Sbjct: 340 KDIFGACGMLASKS 353 >gi|167751032|ref|ZP_02423159.1| hypothetical protein EUBSIR_02017 [Eubacterium siraeum DSM 15702] gi|167655950|gb|EDS00080.1| hypothetical protein EUBSIR_02017 [Eubacterium siraeum DSM 15702] Length = 345 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 103/333 (30%), Positives = 173/333 (51%), Gaps = 25/333 (7%) Query: 36 SQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPAR 95 + I++ IY R F M+ S +++ L+ + +I DE + T K+L Sbjct: 27 ANIFRDIYKRRASGFDEMTLTSADIKAFLSDKYFFGKLKI-DEILQSVDTSKYLFELSDG 85 Query: 96 CIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR 155 C +ETV + +K ++C+S+Q GC++ C FC +G + R+LTA E++ Q+L Sbjct: 86 C-----RVETVLMRQKFGNSICISTQSGCNMGCKFCCSGRLRKQRDLTAGEMVSQIL--- 137 Query: 156 SLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR 215 V I NI +MG+GEP N+D + L I + G+ + Sbjct: 138 --------------AVEKHQNITIGNITVMGIGEPFDNYDALCDFLDIVTVPGGIETGTK 183 Query: 216 RITLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274 IT+ST G E LA+SLHA +++RN L+P+NR+Y + +I++ ++Y Sbjct: 184 HITVSTCGLCDKTKLFAERKEPCNLAVSLHAPDDEIRNRLMPVNRRYSISQVIESAKYYV 243 Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDI 334 +N R++ EY++L GINDS +A L ++ +NLIP+NP P E+ S +++I Sbjct: 244 ERTN-RKVLLEYILLDGINDSRENARQLAALIGNARLFVNLIPYNPSPDSEFKRSSEENI 302 Query: 335 VTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 F + +K++ + R G ++ AACGQL+S Sbjct: 303 TAFYDELKKNRINVTRRKEFGTELSAACGQLRS 335 >gi|167526355|ref|XP_001747511.1| hypothetical protein [Monosiga brevicollis MX1] gi|163773957|gb|EDQ87591.1| predicted protein [Monosiga brevicollis MX1] Length = 1527 Score = 167 bits (422), Expect = 3e-39, Method: Composition-based stats. Identities = 118/380 (31%), Positives = 187/380 (49%), Gaps = 56/380 (14%) Query: 23 KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISC 82 ++GI HV ++W+ I G+ + + + ++ +++ ++ + F++ +V E+ S Sbjct: 593 QLGIADDHVW----RMWRAILHNGVTNVRDIPELPKKLYQVIEEKFALTTSRLVKEETSA 648 Query: 83 DGTRKWLL----------------------RFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 D T LL FP + E ++ K R T+CVSS Sbjct: 649 DNTTTKLLIELQDGAQIETVIMRYGRFELRNFPEDAQKKSSDGEVSFV-SKERATVCVSS 707 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC + C+FC TGT L+ NL A EIL Q+ A + KI Sbjct: 708 QVGCQMGCTFCATGTMGLMSNLAAGEILEQLYHANQV-------------------EKIR 748 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVML 239 N+V MGMGEPL N+D V+ ++S +D S +I++ST G VP I ++ E++ V L Sbjct: 749 NVVFMGMGEPLDNYDAVRFAVSAMTDVRRFSLGASKISVSTVGVVPRIHQMVEDMPDVGL 808 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHY----PGLSNARR--ITFEYVMLKGIN 293 A+SLHA + +LR +VP R + L+ +++A H+ S RR I EYV++ +N Sbjct: 809 ALSLHAPNQELREEIVPSGRSWHLDRIMEAIDHFQETRQETSRRRRTHILIEYVLIDEVN 868 Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPW--PGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351 + A L +LK +N+IP+NP P +Y + F+E ++ G + IR Sbjct: 869 STEEVAHQLGHLLKDRDVLVNVIPYNPTDVPH-DYKPPSRATTDRFNEIVRSYGLRTIIR 927 Query: 352 TPRGLDILAACGQLKSLSKR 371 G D+ AACGQL S+R Sbjct: 928 QELGQDVNAACGQLVVRSQR 947 >gi|307824710|ref|ZP_07654934.1| Radical SAM domain protein [Methylobacter tundripaludum SV96] gi|307734364|gb|EFO05217.1| Radical SAM domain protein [Methylobacter tundripaludum SV96] Length = 217 Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 100/228 (43%), Positives = 133/228 (58%), Gaps = 15/228 (6%) Query: 142 LTAEEILLQVLLA-RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKS 200 +T EI+ Q L A R L + PG E +I NIV MG GEPL NFD VKK+ Sbjct: 1 MTTSEIVGQFLQAWRWLAKNRPGEE------------RILNIVFMGQGEPLHNFDAVKKA 48 Query: 201 LSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINR 259 I G S ++IT+ST+G++P + R +EI GV LA+SLH+ + RN L+PIN+ Sbjct: 49 CEIFLSKHGTSIGVQKITISTAGYIPGLKRWSQEIPGVNLALSLHSPFEEKRNELIPINK 108 Query: 260 KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFN 319 KYPL+ ++ P L+ + IT+EY+++K NDSP DA L IL G A INLIPFN Sbjct: 109 KYPLDEVLATIDKIP-LNKKQFITYEYILIKDFNDSPDDAKKLGTILAGKSAYINLIPFN 167 Query: 320 PWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 +PG Y D I F E + + IR+ +G D+LAACGQL S Sbjct: 168 SFPGSHYKRPDLDKIEKFKEVLDTFKIPTLIRSAKGDDVLAACGQLNS 215 >gi|169333679|ref|ZP_02860872.1| hypothetical protein ANASTE_00063 [Anaerofustis stercorihominis DSM 17244] gi|169259673|gb|EDS73639.1| hypothetical protein ANASTE_00063 [Anaerofustis stercorihominis DSM 17244] Length = 342 Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 114/338 (33%), Positives = 176/338 (52%), Gaps = 28/338 (8%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISC-DGTRKWLL 90 + R QI+KW+Y ++ M+++S +R L + + I + ++ + T K+LL Sbjct: 24 KFRAKQIFKWLYDSYVKSIDEMTNLSLSLREKLKEEYYINHLKLEKKFKEEKSSTTKFLL 83 Query: 91 RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150 + + IE V + ++ TLCVS+Q GC + C FC +G L+RNLT EIL + Sbjct: 84 KTE-----DDILIECVLLRYEAGATLCVSTQAGCRMGCVFCESGKCGLIRNLTKGEILNE 138 Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210 + L + EDI +ISNIV+MG GEPL N+D V L + +D L Sbjct: 139 IYLVSEI-------EDI----------RISNIVLMGSGEPLDNYDEVVGFLKLVTDVNTL 181 Query: 211 SFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 + SKR ITLST G I + + + + LA+SLHA +++R ++PI + +E ++DA Sbjct: 182 NMSKRSITLSTCGIKDKIYSLADSGLDINLALSLHAPFHEMRESMMPIEKANNIEEVLDA 241 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 +Y RRIT+EY +++G ND+ L + KG + IN+I N Sbjct: 242 TFYYRS-KTGRRITYEYCLIEGKNDTIECIDKLYDLFKGTDSLINVIGVNDSSKKRV--- 297 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 + K I F + ++ G + IR G I AACGQLKS Sbjct: 298 NDKYIHAFVDKLRNKGINVTIRRRLGSSINAACGQLKS 335 >gi|298708530|emb|CBJ49163.1| conserved unknown protein [Ectocarpus siliculosus] Length = 425 Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 113/342 (33%), Positives = 178/342 (52%), Gaps = 25/342 (7%) Query: 34 RTSQIWKWIYVRGIRDFQGMSD-ISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R +W + G+ F ++ ++ + +L + ++V E +S GTRK L++ Sbjct: 81 RAKMVWSALSA-GVDPFGDAAEFLTDKTAAVLKDTVERLPWQVVRESVSSCGTRKLLVQ- 138 Query: 93 PARCIGGPVEIETVYIPE--KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150 + +E+ETV IP+ SR T+CVSSQ+GC+ C FC TG LVRNLTA EIL Q Sbjct: 139 ----LEDGLEVETVVIPDLSGSRSTVCVSSQIGCAKNCQFCMTGKMGLVRNLTAGEILGQ 194 Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210 V AR E + +P ++N V MGMGEPL N V +SL + + Sbjct: 195 VFFAR---------ETVREHGMP----PLTNAVYMGMGEPLDNPGAVTQSLQVLTHPFAF 241 Query: 211 SFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 + +K +I++ST G P R + + LA S+HA ++D+R +LVP + + L DA Sbjct: 242 AMAKSKISVSTVGPSPAAIRRMKGMPSRLAWSVHAATDDVRRLLVPTT-VHSMAELRDAF 300 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEYLC 328 + E V+++G+NDSP A L +L+ +P A INL+P+N + Sbjct: 301 AEVLQSRRREHLFVEVVLIEGMNDSPELARALASLLRPLPIRAGINLLPYNDTGHPFFRA 360 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 S ++ + F + + G+ + IRT RG + +ACGQL + + Sbjct: 361 SPKESVEEFQRVLTQEGFVATIRTARGDEESSACGQLATTAN 402 >gi|297626635|ref|YP_003688398.1| hypothetical protein PFREUD_14730 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922400|emb|CBL56972.1| Hypothetical protein PFREUD_14730 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 375 Score = 166 bits (420), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 117/365 (32%), Positives = 186/365 (50%), Gaps = 29/365 (7%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 +E EA+ +G+P R QI + R D + +D+ VR ++ ++P+ Sbjct: 29 DERIEAVRALGLPA----FRAKQISTHWFSRCEHDPRQWTDLPAAVR---DEVADKLFPQ 81 Query: 75 IVD--EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132 ++ + +S D R ++ + G + +E+V + R T+C+SS+ GC++ C FC Sbjct: 82 LLTPVQALSADHGRT--VKVAWQLHDGSL-VESVLMRYPHRTTICISSEAGCAMNCPFCA 138 Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192 TG L RNL+ EI+ QVL G + IP +I+N+V MGMGEP+ Sbjct: 139 TGQGGLQRNLSTAEIVGQVL---------DGARRLANGEIPGGPGRINNVVFMGMGEPMA 189 Query: 193 NFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSND 249 NF V ++ + GL S R +T+ST G VP I + + I LAISLHA ++ Sbjct: 190 NFKAVLGAVREITRPEPDGLGISARGVTVSTIGMVPRINELSDTGIPATLAISLHAPDDE 249 Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309 LR+ LVP+N+ + ++ ++DA Y + RR++ EY ++K IND A L + LK Sbjct: 250 LRDELVPLNKHFNIDAVLDAAWAY-AENTKRRVSIEYALIKDINDQSWRADLLARRLKER 308 Query: 310 P----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +NLIP NP PG ++ S ++D F ++ +R RG +I ACGQL Sbjct: 309 GDWGWCHVNLIPLNPTPGSKWTASRREDEEAFVRHLENHHVPVTVRDTRGREIDGACGQL 368 Query: 366 KSLSK 370 + K Sbjct: 369 AAAVK 373 >gi|291556918|emb|CBL34035.1| radical SAM enzyme, Cfr family [Eubacterium siraeum V10Sc8a] Length = 345 Score = 166 bits (420), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 103/333 (30%), Positives = 175/333 (52%), Gaps = 25/333 (7%) Query: 36 SQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPAR 95 + I++ IY R F M+ S +++ LL+ + +I DE + T K+L Sbjct: 27 ANIFRDIYKRRASGFDEMTLTSADIKALLSDKYFFGKLKI-DEILQSVDTSKYLFELSDG 85 Query: 96 CIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR 155 C ++ETV + +K ++C+S+Q GC++ C FC +G + R+LTA E++ Q+L Sbjct: 86 C-----KVETVLMRQKFGNSICISTQSGCNMGCKFCCSGRLRKQRDLTAGEMVSQIL--- 137 Query: 156 SLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR 215 V ISN +MG+GEP N+D + L I + G+ + Sbjct: 138 --------------AVEKHQNITISNTTVMGIGEPFDNYDALCDFLDIVTVPGGIETGTK 183 Query: 216 RITLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274 IT+ST G + E LA+SLHA +++RN L+P+NR+Y + +I++ ++Y Sbjct: 184 HITVSTCGLCDKMKLFAERKEPCNLAVSLHAPDDEIRNRLMPVNRRYSISQVIESAKYYV 243 Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDI 334 +N R++ EY++L GINDS +A L ++ +NLIP+NP E+ S +++I Sbjct: 244 ERTN-RKVLLEYILLDGINDSRENARQLAALIGNARLFVNLIPYNPSHDSEFKRSSEENI 302 Query: 335 VTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 F + +K++ + R G ++ AACGQL+S Sbjct: 303 TAFYDELKKNRINVTRRKEFGTELSAACGQLRS 335 >gi|171912540|ref|ZP_02928010.1| hypothetical protein VspiD_15210 [Verrucomicrobium spinosum DSM 4136] Length = 368 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 111/320 (34%), Positives = 165/320 (51%), Gaps = 33/320 (10%) Query: 64 LNQHFSIIYPEIV----DEKISCDGTRKWLLRFPARCIGGPVE--IETVYIPEKSRGTLC 117 L QH +P V ++S DGT K LLR P G VE + Y PE++ G C Sbjct: 65 LVQHIHSTFPATVATLAQRQVSEDGTCKLLLRLPD---GRTVESVLMPDYHPERAAG--C 119 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL-LARSLLGDFPGCEDIEGMVIPSVG 176 +SSQVGC++ C FC T RNLT+ EI+ Q + L R G G Sbjct: 120 ISSQVGCAMGCDFCATTQTGFERNLTSGEIVEQFIHLRREARG---------------AG 164 Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EI 235 R + +V MGMGEP+ N +V ++ +D + R++T+ST G VP I + E + Sbjct: 165 RALRTVVFMGMGEPMLNLRHVLPAVERMADPRLGALGWRQVTISTVGIVPGIEELTEANL 224 Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 GV LA+SLHA ++ R ++P+ R++P++ +++A Y S R T +Y +L+G+NDS Sbjct: 225 GVHLAVSLHAPDDETRTAILPMGRRFPVQDILEAADRYQEKS-GRITTIQYCLLEGVNDS 283 Query: 296 PRDALNLIKILKGIPAKINLIPFNP----WPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351 A +L ++K INL+ +NP G Y S + +F ++ G + +R Sbjct: 284 LNQARDLANLMKDRRMHINLLRYNPTGLSLKGRTYAPSSMEQTESFLATLRECGAVAHLR 343 Query: 352 TPRGLDILAACGQLKSLSKR 371 RG DI AACGQL+ R Sbjct: 344 RARGPDIDAACGQLRKREGR 363 >gi|187251578|ref|YP_001876060.1| radical SAM enzyme, Cfr family [Elusimicrobium minutum Pei191] gi|186971738|gb|ACC98723.1| Radical SAM enzyme, Cfr family [Elusimicrobium minutum Pei191] Length = 343 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 117/360 (32%), Positives = 184/360 (51%), Gaps = 31/360 (8%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 M E++++ + + G P R +Q+ +Y GI D+ + ++++ L +F+I+ Sbjct: 1 MNFEKIKDFIKENGFPA----YRIAQVKDAVYKNGITDWNKAVALPADLKNKLKDNFNIL 56 Query: 72 YPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130 + S D T K LL+ ++IETV + T+CVS+QVGC + CSF Sbjct: 57 SFTAAKMQFSDKDRTAKALLKLE-----DGLKIETVLMRMGDVWTVCVSTQVGCPVGCSF 111 Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 C TG + R+LT EEI QVL S + + ++I+N+V MGMGEP Sbjct: 112 CSTGKMRFKRDLTDEEISDQVLFWLSYIKQ------------EKLAQRINNVVFMGMGEP 159 Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSND 249 L N+ N K++ S+ L R I++STSG + ++ V LA+SLH+ +D Sbjct: 160 LFNYLNTVKAVKEISNPDRLGIGMRHISISTSGVADKFHNLAVDLPQVNLALSLHSADDD 219 Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309 RN +VP+NRK+ LE L A Y ++ R++ EY +++G+ND P L K + G+ Sbjct: 220 ERNKIVPLNRKFNLETLQKALTEYIAMT-GRQVFIEYTVVEGVNDRPEHIRLLGKWISGV 278 Query: 310 PAK----INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +NLI N G + +K + F++ ++ S IR G DILAACGQL Sbjct: 279 KDNYLLHVNLIACNMGKGK---TTSEKQVKLFAKGLQGLHISVTIRKSLGNDILAACGQL 335 >gi|256832241|ref|YP_003160968.1| radical SAM enzyme, Cfr family [Jonesia denitrificans DSM 20603] gi|256685772|gb|ACV08665.1| radical SAM enzyme, Cfr family [Jonesia denitrificans DSM 20603] Length = 376 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 114/364 (31%), Positives = 179/364 (49%), Gaps = 28/364 (7%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 M +E + + ++G H R Q+ + + M+D+ + + L + Sbjct: 30 MTPQERRDVVTELG----HQPFRAKQLETHYFSHLTDNADEMTDLPAQAKSEL---VGAL 82 Query: 72 YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131 P +V + + + ++ R G ++IE+V + +R TLCVSSQ GC + C FC Sbjct: 83 MPPLVSKIRTLEADGGATVKTLWRLFDG-IKIESVLMRYPTRSTLCVSSQAGCGMACPFC 141 Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 TG L RNL+ EI+ QV A L G+ PG ++N+V MGMGE Sbjct: 142 ATGQMGLTRNLSTAEIVEQVRQAARALAQGEIPGG-----------ATHLNNLVFMGMGE 190 Query: 190 PLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 PL N+ + ++ +A G S R IT+ST G VP I ++ +E + + LA+SLHA Sbjct: 191 PLANYKALMGAVRQFVAPSPQGFGLSARNITVSTVGLVPAINKLAKEGLPLTLALSLHAP 250 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++LR+ LVPIN ++ ++ +DA Y + RR++ EY ++K +ND A L + L Sbjct: 251 DDELRSQLVPINTRWTVDEALDAAYGYYD-ATGRRVSIEYALIKDMNDHAWRADLLGEKL 309 Query: 307 KGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +N IP NP PG + SD+ F ++ + IR RG DI ACG Sbjct: 310 NARGRGWVHVNPIPLNPTPGSIWTASDRDVEQEFVRRLRSHNIPTTIRDTRGSDIDGACG 369 Query: 364 QLKS 367 QL + Sbjct: 370 QLAA 373 >gi|302339631|ref|YP_003804837.1| radical SAM enzyme, Cfr family [Spirochaeta smaragdinae DSM 11293] gi|301636816|gb|ADK82243.1| radical SAM enzyme, Cfr family [Spirochaeta smaragdinae DSM 11293] Length = 356 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 115/342 (33%), Positives = 174/342 (50%), Gaps = 29/342 (8%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII--YPEIVDEKISCDGTRKWLL 90 R Q+++ + +GI + +S +S R+ L++ S+ P DE + DG+ K LL Sbjct: 33 FRGKQVFRALQ-QGISSWTQISTLSLNDRNRLSEEASLFSSVPTRFDE--ASDGSAKLLL 89 Query: 91 RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150 I G + + E R T C+SSQVGC++ C+FC TGT L+RNL+ EIL Q Sbjct: 90 EL----IDGRFVESVLLVDESGRKTACLSSQVGCAMRCAFCRTGTMGLLRNLSTGEILEQ 145 Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210 ++ G+ ISNIV MGMGEPL N V+K+++I + G Sbjct: 146 YYHLKNRYGE------------------ISNIVFMGMGEPLANLPPVQKAIAILNHPEGP 187 Query: 211 SFSKRRITLSTSGFVPNIARVGEEIGV-MLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 R+IT+ST G V I + E + LA SL LR L+P+++ PL L A Sbjct: 188 GIGIRKITVSTCGIVDGIRSLSETALIPRLACSLVTADPKLRQRLMPVSKANPLPELKQA 247 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 Y S RRIT E V+L GIN + A + +G+ +N+IP+NP G ++ Sbjct: 248 LHFYQEKSK-RRITLECVLLGGINSAEEQAQGVADFARGLSVLVNVIPWNPTEGLDFRPP 306 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 ++I+ + + ++++G + R RG +I ACGQL L R Sbjct: 307 SDQEIIRYRKRLEQAGIAVSRRYRRGSEINGACGQLAVLENR 348 >gi|196234588|ref|ZP_03133408.1| radical SAM enzyme, Cfr family [Chthoniobacter flavus Ellin428] gi|196221334|gb|EDY15884.1| radical SAM enzyme, Cfr family [Chthoniobacter flavus Ellin428] Length = 364 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 111/316 (35%), Positives = 163/316 (51%), Gaps = 35/316 (11%) Query: 64 LNQHFSIIYPE----IVDEKISCDGTRKWLLRFPARCIGGPVEIETV----YIPEKSRGT 115 L + +P+ + ++S DGT K LLR +G +E+V Y PE++ G Sbjct: 63 LRERLRATFPQEAAVLARRQVSEDGTAKLLLR-----MGDGRTVESVLMPDYHPERAAG- 116 Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175 C+SSQVGC++ C FC T RNLT+ EI+ Q L R E + + Sbjct: 117 -CISSQVGCAMGCDFCATTQTGFERNLTSGEIVEQFLQLRR--------EAV------AA 161 Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEE 234 GR + IV MGMGEP+ N NV ++ D +F R+IT+ST G VP I + + Sbjct: 162 GRVLRTIVFMGMGEPMLNLRNVLAAVRRIGDPKLGAFGWRQITISTVGIVPGIDELRAAD 221 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 +GV LAISLHA + R L+P+ R++ +E ++ A Y S+ R T +Y +L G+ND Sbjct: 222 LGVQLAISLHAPDDATRADLLPMGRRFAVEDVLAAADRYQA-SSGRVTTIQYCLLDGVND 280 Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWP----GCEYLCSDQKDIVTFSECIKRSGYSSPI 350 S A +L ++L G +NL+ +NP G Y S + F ++ G + + Sbjct: 281 SLAQARDLSRLLAGRTMHVNLLRYNPTGLSLRGRTYAPSSVEQTEAFLAELRAHGTVAHL 340 Query: 351 RTPRGLDILAACGQLK 366 R RG DI AACGQL+ Sbjct: 341 RRARGPDIDAACGQLR 356 >gi|257458205|ref|ZP_05623359.1| radical SAM enzyme, Cfr family [Treponema vincentii ATCC 35580] gi|257444499|gb|EEV19588.1| radical SAM enzyme, Cfr family [Treponema vincentii ATCC 35580] Length = 348 Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 120/360 (33%), Positives = 178/360 (49%), Gaps = 39/360 (10%) Query: 11 GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70 GM+ EE+ +PQR ++ QI++WI RG F M+++ + R L S+ Sbjct: 16 GMLPEEIATV---CNLPQR---FQSVQIFQWI-ARGCTSFAEMTNLPLKERERLA---SV 65 Query: 71 IYP-EIVDEKI--SCDGTRKWLLRFPARCIGGPVEIETVYIPEK-SRGTLCVSSQVGCSL 126 P V E + DGT K + + IETV + +K R T CVS QVGC + Sbjct: 66 YTPRNTVCETVLKDPDGTVKLGIG-----LYDGSSIETVLLFDKHERRTACVSCQVGCPM 120 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC TG +RNL+ EI+ Q L + G K+ NIV MG Sbjct: 121 GCTFCQTGQLGCLRNLSPNEIVEQFLHLEKICG------------------KLDNIVFMG 162 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245 MGEPL N D++ K++++ + G + S RRITLSTSG I + E ++ + LA+SL Sbjct: 163 MGEPLLNLDSIAKTIAVLTHPKGRNLSHRRITLSTSGICKGIYELAERQLDIRLAVSLTT 222 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 LR L+P+ + PL L A R++ ++ +R+T E +LK +N S + A + Sbjct: 223 ADEALRTTLMPVTKANPLSELKKAIRYFNDKTD-KRVTLELALLKDVNTSYKAAQQVRDF 281 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +G+ INLIP+NP Y +I +F + + +R RG I ACGQL Sbjct: 282 AEGLNVHINLIPWNPVQQLPYSTPSDSEIRSFYNYLTAENLNVTVRQKRGRTIGGACGQL 341 >gi|116328894|ref|YP_798614.1| Fe-S-cluster redox enzyme [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330499|ref|YP_800217.1| Fe-S-cluster redox enzyme [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122281743|sp|Q04UG1|RLMN_LEPBJ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|122283323|sp|Q04Z14|RLMN_LEPBL RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|116121638|gb|ABJ79681.1| Fe-S-cluster redox enzyme [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124188|gb|ABJ75459.1| Fe-S-cluster redox enzyme [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 351 Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 121/367 (32%), Positives = 178/367 (48%), Gaps = 37/367 (10%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L G +EL E ++ +G R QI+ +YV ++ + S+ ++ L Sbjct: 16 LKGRTLKELSEIMVSLG----EKSFRAKQIYHGLYVNRYESWEQFTTFSKTLKEKLEGLC 71 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP--EKSRGTLCVSSQVGCSL 126 S+ +V S DGT+K+ A G E E V+IP + R T+C+SSQVGC+L Sbjct: 72 SLTQLTVVKHLKSVDGTQKFTF---ASEQGK--EFEAVWIPSGDGGRKTICISSQVGCTL 126 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC T + NL A EI+ QVL ++GD +N+V MG Sbjct: 127 NCKFCATAKLEFQGNLKAHEIVDQVLQVEKIVGD-----------------NATNVVFMG 169 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHA 245 MGEP N+ NV ++ SI D L+ +RIT+STSG V I R E AISL+ Sbjct: 170 MGEPFHNYFNVIRAASILHDPDALNLGAKRITISTSGVVNGIRRFIENKEPYNFAISLNH 229 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + R ++ I K+ L L+ A + + RRITFEYVM+ G++ P +A L+KI Sbjct: 230 PDPNGRLQIMDIEEKFALSELLQAAKDFT-RELKRRITFEYVMIPGVSMGPENANKLVKI 288 Query: 306 LKGIPAKINLIPFNPWPGCEYLC---SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + + KIN+IP N E+ ++++ F ++ +G R G DI AC Sbjct: 289 ARSLDCKINVIPLN----TEFFGWRRPTKQEVAEFITLLEPAGVPILNRRSPGKDIFGAC 344 Query: 363 GQLKSLS 369 G L S S Sbjct: 345 GMLASKS 351 >gi|222872785|gb|EEF09916.1| predicted protein [Populus trichocarpa] Length = 302 Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 72/118 (61%), Positives = 94/118 (79%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K+ LIG+ REE+ +AL IG+P+R V MR Q+W W+YVRG+ DF M +IS+E+R Sbjct: 185 VEKKPLIGLSREEMAQALASIGVPERQVNMRVRQLWHWLYVRGVSDFSRMFNISKELRAK 244 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L++HF+I PEIV+E+IS DGTRKWLLRFP R G PVE+ETVYIPE+ RGTLC+SSQ Sbjct: 245 LDEHFTIARPEIVEEQISQDGTRKWLLRFPPRGAGRPVEVETVYIPEEDRGTLCISSQ 302 >gi|332670033|ref|YP_004453041.1| radical SAM enzyme, Cfr family [Cellulomonas fimi ATCC 484] gi|332339071|gb|AEE45654.1| radical SAM enzyme, Cfr family [Cellulomonas fimi ATCC 484] Length = 374 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 106/341 (31%), Positives = 169/341 (49%), Gaps = 20/341 (5%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ + D M+D+ + R L + ++P ++ + + ++ Sbjct: 45 FRAKQLATHYFTHLTSDPAAMTDLPKATRDKLVEG---LFPTLLTAHRTLTADQGTTVKT 101 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 G ++E+V + +R TLC+SSQ GC L C+FC TG L RNL+ EI+ QV Sbjct: 102 LWHLFDG-AKVESVLMRYANRTTLCISSQAGCGLACAFCATGQLGLTRNLSTAEIVEQVR 160 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGL 210 A L D +P +++N+V MGMGEPL N+ V +++ +A GL Sbjct: 161 AAARSLADGE---------VPGGPTRLTNVVFMGMGEPLANYKAVMETVRRLVAPTPDGL 211 Query: 211 SFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 S R +T+ST G VP + ++ E I V LA+SLHA ++LR+ LVP+N ++ ++ ID+ Sbjct: 212 GMSARNVTVSTVGMVPAMDKLANEGIPVTLALSLHAPDDELRSELVPVNTRWSVDEAIDS 271 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSP--RDALNLIKILKGIP-AKINLIPFNPWPGCEY 326 Y RR++ EY +++ +ND D L +G N IP NP P + Sbjct: 272 AHRY-FEKTGRRVSIEYALIRDVNDHAWRADLLGEKLAARGTGWVHCNPIPLNPVPNSRW 330 Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 SD + F ++ G + +R RG +I ACGQL + Sbjct: 331 TASDPQVEREFVARLRAHGIPTTVRDTRGSEIDGACGQLAA 371 >gi|15639062|ref|NP_218508.1| hypothetical protein TP0068 [Treponema pallidum subsp. pallidum str. Nichols] gi|189025302|ref|YP_001933074.1| hypothetical protein TPASS_0068 [Treponema pallidum subsp. pallidum SS14] gi|81556505|sp|O83107|RLMN_TREPA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829921|sp|B2S216|RLMN_TREPS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|3322324|gb|AAC65061.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum str. Nichols] gi|189017877|gb|ACD70495.1| hypothetical protein TPASS_0068 [Treponema pallidum subsp. pallidum SS14] gi|291059484|gb|ADD72219.1| radical SAM enzyme, Cfr family [Treponema pallidum subsp. pallidum str. Chicago] Length = 340 Score = 162 bits (411), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 109/336 (32%), Positives = 160/336 (47%), Gaps = 27/336 (8%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 R R Q+++WI G DF MSD+S E R L + I + DGT K + Sbjct: 24 RFRGVQVFRWIAA-GCTDFHAMSDLSSETRARLARACVISDTRVYTTLRDVDGTLKLGIE 82 Query: 92 FPARCIGGPVEIETVYIPEK-SRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150 + +E V + ++ SR T C+S QVGC + C+FC TG RNL+A EI+ Q Sbjct: 83 LKDK-----RRVEAVLLVDQVSRKTACLSCQVGCPMACAFCQTGQLGFARNLSASEIVEQ 137 Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210 L +G + N+V MGMGEP+ N D V +++ I S G Sbjct: 138 FLHLERCVG------------------TLDNVVFMGMGEPMLNLDAVCRAIEILSHPQGR 179 Query: 211 SFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 S++RIT+STSG I + + + V LA+SL + LR L+P L L A Sbjct: 180 DLSEKRITISTSGHCRGIYSLADRALQVRLAVSLTTANAPLRARLMPRAAHDSLAKLKSA 239 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 R++ S +R+T E +++G+N S R A +I G+ +NLIP+NP + Sbjct: 240 IRYFNEKSG-KRVTLELALMRGVNTSERHAQEVIDFAHGLNVHVNLIPWNPVASIHFETP 298 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + ++ F + R+ R RG I ACGQL Sbjct: 299 REVEVAHFEALLMRARIPVTRRYQRGNGIGGACGQL 334 >gi|315281048|ref|ZP_07869771.1| ribosomal RNA large subunit methyltransferase N [Listeria marthii FSL S4-120] gi|313615305|gb|EFR88727.1| ribosomal RNA large subunit methyltransferase N [Listeria marthii FSL S4-120] Length = 235 Score = 162 bits (410), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 89/206 (43%), Positives = 132/206 (64%), Gaps = 7/206 (3%) Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIG 236 ++S++V+MG+GEP N+DNV L + + GL+ R IT+STSG P I E+ Sbjct: 22 RVSHVVVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQ 81 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 V LAISLHA +N+LR ++ IN+ Y +E L++A +Y +N RRITFEY+MLKG+ND Sbjct: 82 VNLAISLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTN-RRITFEYIMLKGVNDHK 140 Query: 297 RDALNLIKIL--KGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353 ++AL L +L A +NLIP+NP +Y S ++D++ F + +K++G + IR Sbjct: 141 KEALELAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRRE 200 Query: 354 RGLDILAACGQLKSLSKRIPKVPRQE 379 G DI AACGQL+ SK+I +V +E Sbjct: 201 HGTDIDAACGQLR--SKQIKRVGVRE 224 >gi|255024245|ref|ZP_05296231.1| hypothetical protein LmonocyFSL_13899 [Listeria monocytogenes FSL J1-208] Length = 220 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 89/206 (43%), Positives = 132/206 (64%), Gaps = 7/206 (3%) Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIG 236 ++S++V+MG+GEP N+DNV L + + GL+ R IT+STSG P I E+ Sbjct: 7 RVSHVVVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQ 66 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 V LAISLHA +N+LR ++ IN+ Y +E L++A +Y +N RRITFEY+MLKG+ND Sbjct: 67 VNLAISLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTN-RRITFEYIMLKGVNDHK 125 Query: 297 RDALNLIKIL--KGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353 ++AL L +L A +NLIP+NP +Y S ++D++ F + +K++G + IR Sbjct: 126 KEALELAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRRE 185 Query: 354 RGLDILAACGQLKSLSKRIPKVPRQE 379 G DI AACGQL+ SK+I +V +E Sbjct: 186 HGTDIDAACGQLR--SKQIKRVGVRE 209 >gi|290968497|ref|ZP_06560036.1| radical SAM enzyme, Cfr family [Megasphaera genomosp. type_1 str. 28L] gi|290781493|gb|EFD94082.1| radical SAM enzyme, Cfr family [Megasphaera genomosp. type_1 str. 28L] Length = 345 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 109/361 (30%), Positives = 178/361 (49%), Gaps = 29/361 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 SL+ EL++ L I + R QI+ ++Y + I ++ M + ++ R L Sbjct: 3 SLLDFTLPELQQFLEAHSIK----KFRAKQIFHYVYKQNITVWEDMVQLPKQDRQKLQNL 58 Query: 68 FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I P IV S +G T K L++ + +ETV + ++C+SSQVGC++ Sbjct: 59 LEIYIPPIVSRLDSANGETVKLLVQ-----LADGQTVETVLMRHNYGNSICLSSQVGCAV 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC + VRNLT E+ Q+L R V + ++V+MG Sbjct: 114 NCLFCASAKNGFVRNLTMGEMQAQLLAFRRY-----------------VTTDLHSVVLMG 156 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 GEPL N+DNV + L ++ R +T+ST+G VP I ++ +E I V LA+SLHA Sbjct: 157 TGEPLLNYDNVLRFLRTIHEAYSFYLGYRNMTISTAGIVPQIYKLAQEGIPVNLAVSLHA 216 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +++LR ++PI Y E ++ A HY ++ R++TFEY++++ + +P A L Sbjct: 217 SNHELRRKIMPIADTYAWEDIVRAAFHYFAVT-GRKVTFEYILIRDLTCTPACAEELASR 275 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + IN IP N +++ F + +K+ S +R G +I AACGQL Sbjct: 276 MAHKNVLINAIPINDNYDVGLRRPTLREMQAFVKILKKHHISVTLRREMGSEIQAACGQL 335 Query: 366 K 366 + Sbjct: 336 R 336 >gi|184200284|ref|YP_001854491.1| hypothetical protein KRH_06380 [Kocuria rhizophila DC2201] gi|205829780|sp|B2GJ15|RLMN_KOCRD RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|183580514|dbj|BAG28985.1| putative rRNA methyltransferase [Kocuria rhizophila DC2201] Length = 382 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 100/271 (36%), Positives = 146/271 (53%), Gaps = 13/271 (4%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 +E+V + R T+C+SSQ GC + C FC TG L RNL+A EI+ QV+ L D Sbjct: 117 VESVLMRYDKRVTMCISSQAGCGMNCPFCATGQSGLTRNLSAAEIVDQVVQGVRALRDG- 175 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLS 220 D E +++SNIV MGMGE L N+ ++ I GL S R +T+S Sbjct: 176 AVGDPE-----EAPQRVSNIVFMGMGEALANYKATMGAVHRIIDPSPEGLGISARGLTMS 230 Query: 221 TSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279 T G VP I + E++ + LA+SLHA ++LR+ L+PIN ++ ++ +DA R Y + Sbjct: 231 TVGLVPGIRKFTLEKLPITLALSLHAPDDELRDELIPINTRWKVDEALDAARDYYD-ATG 289 Query: 280 RRITFEYVMLKGINDSPRDALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVT 336 RR++ EY +++ IND A L + L G +N IP NP PG ++ S Sbjct: 290 RRVSIEYALIRDINDQGWRADLLGEKLNKRGGGWVHVNPIPLNPTPGSKWTASRPGVEQN 349 Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 F E ++ G + +R RG DI ACGQL + Sbjct: 350 FVERLRAHGIPTTVRDTRGSDIDGACGQLAT 380 >gi|302810701|ref|XP_002987041.1| hypothetical protein SELMODRAFT_182858 [Selaginella moellendorffii] gi|300145206|gb|EFJ11884.1| hypothetical protein SELMODRAFT_182858 [Selaginella moellendorffii] Length = 374 Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 125/369 (33%), Positives = 180/369 (48%), Gaps = 44/369 (11%) Query: 11 GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70 G+++ EL+ + GI HV IW+ + + + + LL F Sbjct: 10 GILKAELQ----RHGIKPLHVYT----IWRHVMDHPNAALHQVPGLPGALYPLLRTRFKA 61 Query: 71 IYPEIVDEKISCDGTR-KWLLRFPA---------RCIGGPVEIETVYIPEKSRGTLCVSS 120 + + S +GT K LL+ + R GG + P R TLCVSS Sbjct: 62 LTSTLAAHSTSANGTTTKLLLQLQSGQSVETVIMRHHGGAGKYAGGPRPGSDRATLCVSS 121 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC + CSFC TGT V NLTA EI+ Q + A + I Sbjct: 122 QVGCKMGCSFCATGTMGFVANLTAGEIVEQYVHASRM-------------------SPIR 162 Query: 181 NIVMMGMGEPLCNFDNVKKSL-SIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVM 238 NIV MGMGEPL N+++V +++ ++ GLS S RIT+ST G VP I V ++ GV Sbjct: 163 NIVFMGMGEPLNNYNSVVQAVQTLTGRCFGLSPS--RITISTVGIVPRILSVAGDLPGVN 220 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLHA + LR +VP +R + L+ L+ A Y SN R + EYVML+ +NDS +D Sbjct: 221 LALSLHAPTQALRCQIVPASRAFTLDKLMAAVDAYQASSN-RTLFIEYVMLQDVNDSSQD 279 Query: 299 ALNLIKILKGIPAKINLIPFN-PWPGCEYLCSDQKDIVTFSECIKRS-GYSSPIRTPRGL 356 A L +L+ +NLIP+N + +Y + + F + ++ G + +R G Sbjct: 280 ARQLGCLLRDRKVVLNLIPYNHTFVVGDYRATPADRVHHFQKIVREEFGIRTTVRQEMGQ 339 Query: 357 DILAACGQL 365 DI ACGQL Sbjct: 340 DIDGACGQL 348 >gi|269955985|ref|YP_003325774.1| radical SAM enzyme, Cfr family [Xylanimonas cellulosilytica DSM 15894] gi|269304666|gb|ACZ30216.1| radical SAM enzyme, Cfr family [Xylanimonas cellulosilytica DSM 15894] Length = 389 Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 105/274 (38%), Positives = 149/274 (54%), Gaps = 22/274 (8%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLA-RSL-LGD 160 IE+V + R TLC+SSQVGC + C FC TG RNL+A E+L QV LA RSL LG+ Sbjct: 122 IESVLMRYPRRSTLCISSQVGCGMACPFCATGQLGFTRNLSAAEMLEQVRLAMRSLALGE 181 Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRIT 218 PG +++N+V MG GE L N+ + + +A G S R IT Sbjct: 182 IPGGPT-----------RLNNLVFMGEGEGLINYRAIMTCIRTLVADAPEGFGMSARNIT 230 Query: 219 LSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277 +ST G VP + ++ E + + LA+SLHA +DLR+ LVPIN ++ ++ +DA R Y + Sbjct: 231 VSTVGLVPGMKKLAAEGLPLTLALSLHAPDDDLRSELVPINTRFSVDEALDAARAY-FEA 289 Query: 278 NARRITFEYVMLKGINDSPRDALNLIKIL----KGIPAKINLIPFNPWPGCEYLCSDQKD 333 RR++ EY ++K +ND A L L KG +N IP NP PG + S++ Sbjct: 290 TGRRVSIEYALIKDMNDHAWRADLLGTKLNARGKGW-VHVNPIPLNPTPGSIWTASERAV 348 Query: 334 IVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 F ++ G + +R RG DI ACGQL + Sbjct: 349 EDEFVARLRGHGIPTTVRDTRGSDIDGACGQLAA 382 >gi|91977329|ref|YP_569988.1| hypothetical protein RPD_2859 [Rhodopseudomonas palustris BisB5] gi|123721790|sp|Q136A2|Y2859_RHOPS RecName: Full=Probable RNA methyltransferase RPD_2859 gi|91683785|gb|ABE40087.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5] Length = 359 Score = 159 bits (403), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 95/264 (35%), Positives = 144/264 (54%), Gaps = 23/264 (8%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 +E+V I T C+SSQVGC+ C FC +G L+RNL A EI+ QV+ Sbjct: 98 VESVLIRRFDGHTACISSQVGCAFACRFCASGQAGLMRNLEAGEIVEQVV---------- 147 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 +G K++ IV MG+GEPL N+ V K++ I D G++F ITLST Sbjct: 148 -----------RLGPKVNRIVFMGIGEPLNNYQQVLKAIRILRDRQGMNFPTTGITLSTI 196 Query: 223 GFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281 G + ++ EE + + L ISLHA + ++R+ L+P RK+PL +++ + N R Sbjct: 197 GIPKALKQLREEHLAINLTISLHATTQEVRDRLIPGARKHPLGEVVERACAWARRHN-RP 255 Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341 +TF Y++L GINDS DA L +L+ PA++NL+ +NP G + + + F + Sbjct: 256 VTFAYLVLPGINDSIADARRLAAMLRDSPARVNLMRWNPVDGVGLQRTPDRSLAHFRTTL 315 Query: 342 KRSGYSSPIRTPRGLDILAACGQL 365 + + +R +G DI AACGQL Sbjct: 316 ENALVPVVVRDTQGRDISAACGQL 339 >gi|313888523|ref|ZP_07822190.1| 23S rRNA m2A2503 methyltransferase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845552|gb|EFR32946.1| 23S rRNA m2A2503 methyltransferase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 333 Score = 159 bits (403), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 102/285 (35%), Positives = 148/285 (51%), Gaps = 24/285 (8%) Query: 83 DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNL 142 D TRK L R + IE V + K + CVS+QVGC + C FC + L+RNL Sbjct: 66 DETRKMLFRLKDGNL-----IEGVLMEYKHGYSQCVSTQVGCRMGCDFCASTKSGLLRNL 120 Query: 143 TAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS 202 +A E+L QV +IE KISN ++MG GEPL NFD V + + Sbjct: 121 SAGEMLGQVY-------------EIEN----KYNIKISNFILMGSGEPLDNFDEVIRFIK 163 Query: 203 IASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKY 261 + D G + S R IT+ST G I + + + + LA+SLH ++ R++L+PINR++ Sbjct: 164 LLHDEKGHNTSYRNITISTCGVADKIYDLADLNLPINLAVSLHQTNDKDRSVLMPINRRF 223 Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPW 321 L L + +Y +N RITFEY M+K ND ++ L K + INLIP NP Sbjct: 224 NLVELKKSLEYYVKKTN-NRITFEYTMIKNQNDGIKNIDELYNFAKNLKCHINLIPLNPI 282 Query: 322 PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + + +I F +++ G++ IR G DI A+CGQL+ Sbjct: 283 EEFDEKRPSKAEINDFKNKLEKKGFNVTIRRELGSDISASCGQLR 327 >gi|255994247|ref|ZP_05427382.1| radical SAM enzyme, Cfr family [Eubacterium saphenum ATCC 49989] gi|255993915|gb|EEU04004.1| radical SAM enzyme, Cfr family [Eubacterium saphenum ATCC 49989] Length = 342 Score = 159 bits (403), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 119/365 (32%), Positives = 186/365 (50%), Gaps = 35/365 (9%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +SL GM +E+E +L +G R QI + + G+ + IS++ R L+ Sbjct: 2 KSLAGMNLKEIESVVLSLGEKA----YRAKQILEAVN-NGVDSIDKIHTISKDFRAKLSN 56 Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++I + + +S DG+ K+LL+ G IE + + K +LC+SSQ GC Sbjct: 57 KYTISSITVEKKLVSKRDGSIKYLLKTS----DGKF-IEAMSMVYKHGVSLCISSQAGCR 111 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G + L RNL+A E++ QVL+ + KIS IV+M Sbjct: 112 MGCTFCSSGKEGLERNLSAFEMIEQVLILKRGFD------------------KISGIVVM 153 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244 G GEP N+D +KK L ++ L KR IT+ST G I + ++ + LA SLH Sbjct: 154 GTGEPFDNYDELKKFLKRITNEEFLRIGKRHITVSTCGIEEGIKKFSKDFRSINLAFSLH 213 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A SND+R ++P N K ++ +I + ++ RR+TFEY+++KG+NDS + L + Sbjct: 214 AASNDIRKKIMPGN-KLSVDDIIGLASEHAKITR-RRVTFEYILIKGVNDSMAECELLCR 271 Query: 305 ILKGIPAKINLIPFN--PWPGCEYLCS-DQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 LKGI +NLI N + G S D K + + +++ IR G DI A Sbjct: 272 KLKGINCLVNLIRLNGSSYEGDNRFSSPDMKTVKQWQNELEKRHIQVTIRRTIGEDIQGA 331 Query: 362 CGQLK 366 CGQL+ Sbjct: 332 CGQLR 336 >gi|302807670|ref|XP_002985529.1| hypothetical protein SELMODRAFT_122498 [Selaginella moellendorffii] gi|300146735|gb|EFJ13403.1| hypothetical protein SELMODRAFT_122498 [Selaginella moellendorffii] Length = 374 Score = 159 bits (402), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 125/369 (33%), Positives = 180/369 (48%), Gaps = 44/369 (11%) Query: 11 GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70 G+++ EL+ + GI HV IW+ + + + + LL F Sbjct: 10 GILKAELQ----RHGIKPLHVYT----IWRHVMDHPNAALHQVPGLPGALYPLLRTRFKA 61 Query: 71 IYPEIVDEKISCDG-TRKWLLRFPA---------RCIGGPVEIETVYIPEKSRGTLCVSS 120 + + S +G T K LL+ + R GG + P R TLCVSS Sbjct: 62 LTSTLAAHSTSANGSTTKLLLQLQSGQSVETVIMRHHGGAGKYAGGPRPGSDRATLCVSS 121 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC + CSFC TGT V NLTA EI+ Q + A + I Sbjct: 122 QVGCKMGCSFCATGTMGFVANLTAGEIVEQYVHASRM-------------------SPIR 162 Query: 181 NIVMMGMGEPLCNFDNVKKSL-SIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVM 238 NIV MGMGEPL N+++V +++ ++ GLS S RIT+ST G VP I + G+ GV Sbjct: 163 NIVFMGMGEPLNNYNSVVQAVQTLTGRCFGLSPS--RITISTVGIVPRILSLAGDLPGVN 220 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLHA + LR +VP +R + L+ L+ A Y SN R + EYVML+ +NDS +D Sbjct: 221 LALSLHAPTQALRCQIVPASRAFTLDKLMAAVDAYQASSN-RTLFIEYVMLQDVNDSSQD 279 Query: 299 ALNLIKILKGIPAKINLIPFN-PWPGCEYLCSDQKDIVTFSECIKRS-GYSSPIRTPRGL 356 A L +L+ +NLIP+N + +Y + + F + ++ G + +R G Sbjct: 280 ARQLGCLLRDRKVVLNLIPYNHTFVVGDYRATPADRVHHFQKIVREEFGIRTTVRQEMGQ 339 Query: 357 DILAACGQL 365 DI ACGQL Sbjct: 340 DIDGACGQL 348 >gi|282882048|ref|ZP_06290689.1| radical SAM enzyme, Cfr family [Peptoniphilus lacrimalis 315-B] gi|281298078|gb|EFA90533.1| radical SAM enzyme, Cfr family [Peptoniphilus lacrimalis 315-B] Length = 348 Score = 159 bits (401), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 111/361 (30%), Positives = 176/361 (48%), Gaps = 31/361 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L M +EL++ L + R +Q++ + + D + + ++ L N Sbjct: 3 LNSMYLDELKDYL----SSKSEKSFRANQLYTFFHKNKRWDIENSNLSKSTLKILQNDEI 58 Query: 69 SII-YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 + I +I K+ D T+K+L + IE V + + C+S+QVGC + Sbjct: 59 NTIKILKIFQSKL--DDTKKFLFTLDDSNV-----IEGVLMKYSFGYSQCISTQVGCRMG 111 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C+FC + L RNLT E+L QV + + G + N ++MG Sbjct: 112 CAFCASTKDGLFRNLTPAEMLNQVYIVENYFG-----------------INVKNFILMGS 154 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLAISLHAV 246 GEPL NFDNV K L I G + S R IT+ST G V I + + + + LA+SLH Sbjct: 155 GEPLDNFDNVIKFLKILHSKEGHNTSYRNITISTCGVVDGIYKLIDSALPINLAVSLHQT 214 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ R+ ++PINRKY L L A Y L RITFEY ++KG ND+ ++ L ++ Sbjct: 215 NDLERSKIMPINRKYNLNKLKKALEDY-NLKTKNRITFEYTLIKGKNDTLKNVNELKEMF 273 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + + INLIP NP +++DI F ++ + ++ +R G DI A+CGQL+ Sbjct: 274 QNLFCHINLIPLNPIEEYNEQRPNRQDINKFKRLLEDASFNVTVRRELGSDIDASCGQLR 333 Query: 367 S 367 + Sbjct: 334 A 334 >gi|149200056|ref|ZP_01877081.1| YloN [Lentisphaera araneosa HTCC2155] gi|149136814|gb|EDM25242.1| YloN [Lentisphaera araneosa HTCC2155] Length = 345 Score = 159 bits (401), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 116/361 (32%), Positives = 180/361 (49%), Gaps = 29/361 (8%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 M RE ++ + + +P + R Q+ + + F +++ +++R+ L + ++ Sbjct: 1 MNRERIQTIVDEYKLP----KFRAKQLKEAFFEHHYSSFDQLTNFPKDLRNKLTEENQVL 56 Query: 72 YPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYI-PEKSRGTLCVSSQVGCSLTCS 129 + S D T K LL + ++IE+V + P+ T C+SSQVGC++ CS Sbjct: 57 CLTVNKVFASSDQVTYKALLE-----LHDGLKIESVLMSPKPGLWTACISSQVGCAMKCS 111 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 FC TGT L RNLT+EEI QVL R F DI+ +++N+V MGMGE Sbjct: 112 FCATGTMGLTRNLTSEEISDQVLFWRQ----FIAKNDID-------TDRLNNVVYMGMGE 160 Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSN 248 PL N V S+ + R I++STSG + + + E+ V LA+SLHA + Sbjct: 161 PLHNTKEVFSSIEELTAEDSFKIGSRHISVSTSGLLKGVKEMAEKFPQVNLALSLHAAKD 220 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 +LR+ ++PIN+ + LE + Y S R++ EYV+L+G N+ A+ L K LK Sbjct: 221 ELRSSIMPINKAFDLEKIRTCLDEYID-STHRKVFIEYVLLEGENNELSHAVELSKFLKS 279 Query: 309 IP----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 + NLI +N E+ S ++ F +K G S IR G DI ACGQ Sbjct: 280 LKRPELTHTNLIVYNE-TDSEHKGSTKQKADQFRNHLKSKGLSVTIRKNLGRDIDGACGQ 338 Query: 365 L 365 L Sbjct: 339 L 339 >gi|304440677|ref|ZP_07400561.1| cfr family radical SAM enzyme [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370864|gb|EFM24486.1| cfr family radical SAM enzyme [Peptoniphilus duerdenii ATCC BAA-1640] Length = 342 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 112/355 (31%), Positives = 174/355 (49%), Gaps = 36/355 (10%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII--Y 72 EE++ + +IG + R Q++ + D S++ ++++ L + I Y Sbjct: 9 EEMKSYIEEIG----EKKFRAQQLFTFFNKNKKWDLNSSSNLPKDLKSLPVREIKIFEEY 64 Query: 73 PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132 +DE T K+L + IE V + + + C+S+QVGC + CSFC Sbjct: 65 HSKIDE------TVKFLFELNDGNL-----IEGVLLKYEHGYSQCISTQVGCRMGCSFCA 113 Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192 + +RNLT E+ Q+ L + LG ISNIV+MG GEPL Sbjct: 114 STKGGRIRNLTPSEMAGQIYLVENKLG-----------------INISNIVLMGSGEPLD 156 Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLR 251 N++NV K I D G + S R IT+S+ G VP I + + + + LAISLH+ ++ R Sbjct: 157 NYENVIKFFDIIHDENGKNLSNRSITISSCGIVPRIYDLEKLKKPINLAISLHSPFDEDR 216 Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311 ++PI +Y +E ++ A ++Y RIT EY ++K +ND DA LI+I K I Sbjct: 217 KKIMPITNRYSIEEVLAASKYYSE-GTGTRITLEYTLIKDVNDREIDADELIRITKDIKV 275 Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +NLIP NP + K F + + G ++ IR G DI A+CGQL+ Sbjct: 276 HVNLIPLNPIKEYNKGKTSPKGAKKFQNMLLKGGINATIRRELGSDISASCGQLR 330 >gi|300814530|ref|ZP_07094786.1| 23S rRNA m2A2503 methyltransferase [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511357|gb|EFK38601.1| 23S rRNA m2A2503 methyltransferase [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 348 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 111/361 (30%), Positives = 175/361 (48%), Gaps = 31/361 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L M +EL++ L G R +Q++ + + D + + ++ + N Sbjct: 3 LNSMYLDELKDYLSSKG----EKSFRANQLYTFFHKNKRWDIENSNLSKSTLKIIQNDEI 58 Query: 69 SII-YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 + I +I K+ D T+K+L + IE V + + C+S+QVGC + Sbjct: 59 NTIKILKIFQSKL--DTTKKFLFTLDDSNV-----IEGVLMKYNFGYSQCISTQVGCRMG 111 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C+FC + L RNLT E+L QV + + G + N ++MG Sbjct: 112 CAFCASTKDGLFRNLTPAEMLNQVYIVENYFG-----------------INVKNFILMGS 154 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLAISLHAV 246 GEPL NFDNV K L I G + S R IT+ST G V I + + + + LA+SLH Sbjct: 155 GEPLDNFDNVIKFLKILHSKEGHNTSYRNITISTCGVVDGIYKLIDSALPINLAVSLHQT 214 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ R+ ++PINRKY L L A Y L RITFEY ++KG ND+ ++ L + Sbjct: 215 NDLERSKIMPINRKYNLNKLKKALEDY-NLKTKNRITFEYTLIKGKNDTLKNVNELKDMF 273 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + + INLIP NP +++DI F ++ + ++ +R G DI A+CGQL+ Sbjct: 274 QNLFCHINLIPLNPIEEYNEQRPNRQDINKFKRLLEDASFNVTVRRELGSDIDASCGQLR 333 Query: 367 S 367 + Sbjct: 334 A 334 >gi|182412196|ref|YP_001817262.1| radical SAM protein [Opitutus terrae PB90-1] gi|205829633|sp|B1ZQZ5|RLMN1_OPITP RecName: Full=Ribosomal RNA large subunit methyltransferase N 1; AltName: Full=23S rRNA m2A2503 methyltransferase 1 gi|177839410|gb|ACB73662.1| radical SAM enzyme, Cfr family [Opitutus terrae PB90-1] Length = 355 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 99/300 (33%), Positives = 149/300 (49%), Gaps = 27/300 (9%) Query: 75 IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE--KSRGTLCVSSQVGCSLTCSFCY 132 + +++ DGT K LLR + +E V +P+ R C+SSQVGC++ C FC Sbjct: 67 LAARQVAADGTTKLLLR-----LADGRTVEAVLMPDYRADRAAGCLSSQVGCAMGCDFCA 121 Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192 T RNLTA E++ Q L R S GRK+ +V MGMGEPL Sbjct: 122 TAQSGFERNLTAGEMVEQFLALRR--------------EAASAGRKLQTVVFMGMGEPLL 167 Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVMLAISLHAVSNDLR 251 N D V ++ +D+ R++T+ST G VP I A ++G+ LA+SLHA + R Sbjct: 168 NLDAVLTAVRRIADNTYGGLGWRQVTVSTVGLVPGIDALTAADLGINLAVSLHAPDDATR 227 Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311 L+P R++ + ++ A + S R + +Y +LKG+NDS A L ++ Sbjct: 228 AALLPAGRRFAIADILAAVDRFQA-SRGRPVIIQYCLLKGVNDSAAHARMLAAVIGSRRM 286 Query: 312 KINLIPFNPWP----GCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 +NL+ +NP G Y S + F ++ G + +R RG DI AACGQL++ Sbjct: 287 HVNLLHYNPTGLSLRGVRYEPSGDEAAAQFLAELRARGVVTHLRRSRGPDIDAACGQLRA 346 >gi|254442339|ref|ZP_05055815.1| radical SAM enzyme, Cfr family [Verrucomicrobiae bacterium DG1235] gi|198256647|gb|EDY80955.1| radical SAM enzyme, Cfr family [Verrucomicrobiae bacterium DG1235] Length = 342 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 118/364 (32%), Positives = 175/364 (48%), Gaps = 39/364 (10%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN--QHFSIIY 72 ++LE+ L G R +R + ++ ++ R+F + ++ + N + F Y Sbjct: 9 KKLEKHLRHNGFGARELR----RTYRMLF----REFTPLENLGWDDAFTANFKEQFETSY 60 Query: 73 PEIV---DEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTC 128 +V D KI DG K L P +IETV + R ++CVSSQVGC+ C Sbjct: 61 LTLVSRIDSKI--DGATKLLFETP-----DGKKIETVILRIATGRTSICVSSQVGCTEKC 113 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG RNL +EEIL QV+ A G ++ S R + NIV MGMG Sbjct: 114 RFCATGELGFFRNLKSEEILDQVVQA--------------GRILASEDRSLRNIVFMGMG 159 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVS 247 EPL N+DN+ ++ F +RIT+S+ G I + + V LA+SL+ + Sbjct: 160 EPLRNYDNLVAAMDQLLSEHVFKFVPKRITVSSLGIPELIVKFAQRFPQVSLALSLNGSN 219 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 + R+ ++PIN +YP+ L + + EY+M K +NDS DA + L+ Sbjct: 220 DAARSEVMPINNRYPMADLRSMLEQLETIREG-IVMIEYIMFKDLNDSVEDAAKVAAFLR 278 Query: 308 GIPAKINLIPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 G+ INLIP+NP +L S + I F ++ GY R G DI AACGQL Sbjct: 279 GLAVHINLIPYNPDYSLNKSFLPSSIETIEAFKNHLQSEGYKVTRRFSLGQDIAAACGQL 338 Query: 366 KSLS 369 + S Sbjct: 339 ANKS 342 >gi|256824969|ref|YP_003148929.1| ribosomal RNA large subunit methyltransferase N [Kytococcus sedentarius DSM 20547] gi|256688362|gb|ACV06164.1| radical SAM enzyme, Cfr family [Kytococcus sedentarius DSM 20547] Length = 426 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 123/396 (31%), Positives = 186/396 (46%), Gaps = 62/396 (15%) Query: 18 EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE-----VRHLLNQHFSIIY 72 ++A+ G P R +Q+ K + R + M+D+ + VR L+ Q + + Sbjct: 40 KQAVTDAGWPA----FRANQLSKHYFERYTDEPAAMTDLPKAGREEMVRGLMPQLLTPVS 95 Query: 73 PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132 D+ T K L R + +E+V + +R TLC+SSQ GC + C FC Sbjct: 96 VMRADDG----ATVKTLWRLHDGAL-----VESVLMRYPNRVTLCLSSQAGCGMNCPFCA 146 Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGD--FPGCED----IEGMV-------IPSVG--- 176 TG Q L RNL+ EI+ Q++ A +L D PG EG V PS+ Sbjct: 147 TGQQGLTRNLSTAEIVGQLVAANRMLNDPEAPGLAPPPALAEGQVELGENDADPSLDAGA 206 Query: 177 -----------------RKISNIVMMGMGEPLCNF----DNVKKSLSIASDSMGLSFSKR 215 ++ N+V MGMGE L N+ D V++ + A GL S R Sbjct: 207 DEVEDASLDTPLAAGGPHRVHNVVFMGMGEALANYRKAVDAVRRMVDPAP--AGLGMSAR 264 Query: 216 RITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274 IT+ST G VP I + E + LA+SLHA ++LR+ LVPIN+++ ++ +DA Y Sbjct: 265 GITMSTVGLVPAIDKFAAEGVAATLALSLHAPDDELRDELVPINKRWKVDEALDAAYRY- 323 Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQ 331 + RR++ EY +++ +ND A L + L +N IP NP PG ++ S Sbjct: 324 FETTGRRVSIEYALIRDMNDQAWRADLLAEKLNARGRGWVHVNPIPLNPTPGSKWTASRP 383 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 F E ++ G + +R RG DI ACGQL + Sbjct: 384 GVEQQFVERLRAGGIPTTVRDTRGSDIDGACGQLAA 419 >gi|240147073|ref|ZP_04745674.1| radical SAM enzyme, Cfr family [Roseburia intestinalis L1-82] gi|257200758|gb|EEU99042.1| radical SAM enzyme, Cfr family [Roseburia intestinalis L1-82] Length = 265 Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 99/291 (34%), Positives = 158/291 (54%), Gaps = 33/291 (11%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K + M EEL+ + IG R Q+++W++ + F M+++S+ ++ L Sbjct: 4 EKTDIKSMNLEELKSYMESIG----EKPFRAKQLYQWMHEKQAASFDEMTNLSKSLQEKL 59 Query: 65 NQ--HFSIIYPEIVD-EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 + HF + E V KI DGTRK+L G V IE+V + K ++C+SSQ Sbjct: 60 KKECHFVSLKQEAVQVSKI--DGTRKYLFALD----DGNV-IESVLMRYKHGNSVCISSQ 112 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC + C FC + LVR LT E+L Q+ + G +++N Sbjct: 113 VGCRMGCRFCASTLDGLVRGLTPSEMLDQIY-----------------RITRDTGERVAN 155 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLA 240 +V+MG GEP+ NFDN+ K + + +D GL+ S+R +T+ST G VP + + + ++ + LA Sbjct: 156 VVVMGTGEPMDNFDNLLKFIELLTDENGLNISQRNVTVSTCGIVPKMRELADKKLQITLA 215 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291 +SLHA S + R L+PI KY + +I+ACR+Y RR+TFEY ++ G Sbjct: 216 LSLHASSQEKRLELMPIANKYEIHEVIEACRYYFE-QTGRRVTFEYSLVGG 265 >gi|32474560|ref|NP_867554.1| Fe-S-cluster redox enzyme [Rhodopirellula baltica SH 1] gi|81660696|sp|Q7UPG1|Y6963_RHOBA RecName: Full=Probable RNA methyltransferase RB6963 gi|32445099|emb|CAD75101.1| conserved hypothetical protein-putative Fe-S-cluster redox enzyme [Rhodopirellula baltica SH 1] Length = 379 Score = 156 bits (395), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 89/255 (34%), Positives = 137/255 (53%), Gaps = 17/255 (6%) Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172 R TLCVSSQ+GC+ C FC TG + +NL EEIL QV+ A G ++ Sbjct: 99 RTTLCVSSQIGCAAACDFCATGKMGIAKNLATEEILDQVVQA--------------GQIL 144 Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232 R++SNIV MGMGEPL N NV +++ + + + S + +ST G + R+ Sbjct: 145 RGEDRRLSNIVFMGMGEPLHNEVNVTEAIELLTAPDHFARSPSTVLVSTVGVPAGMLRLA 204 Query: 233 EEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291 + + LA+SLH+ R ++P+ +K L L DA + + R EY+ML+ Sbjct: 205 KRFPNLNLALSLHSADQTTREKIIPLGKKASLAQLHDAIHEIQTIQD-REFMIEYLMLRD 263 Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIV-TFSECIKRSGYSSPI 350 +NDS +DA LI + + +NLIP+N +L + + ++ +F++ +K SG + + Sbjct: 264 VNDSAKDADRLIDWIGDLRVHVNLIPYNTIEASPHLHASSRPVIESFADILKASGLKTTV 323 Query: 351 RTPRGLDILAACGQL 365 R G DI AACGQL Sbjct: 324 RYSLGNDIEAACGQL 338 >gi|153007216|ref|YP_001381541.1| ribosomal RNA large subunit methyltransferase N [Anaeromyxobacter sp. Fw109-5] gi|205829649|sp|A7HIL1|Y4379_ANADF RecName: Full=Probable RNA methyltransferase Anae109_4379 gi|152030789|gb|ABS28557.1| Radical SAM domain protein [Anaeromyxobacter sp. Fw109-5] Length = 336 Score = 155 bits (392), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 105/300 (35%), Positives = 149/300 (49%), Gaps = 33/300 (11%) Query: 79 KISC----DGTRKWLLRFPARCIGGPVEIETVYIPE-KSRGTLCVSSQVGCSLTCSFCYT 133 +++C DG R++LL +G +E V IP + T+C+SSQ GC+L CSFC T Sbjct: 62 RVACTDAKDGFRRYLLE-----LGDGARVEAVRIPLFDTHHTVCLSSQAGCALGCSFCAT 116 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 G L R+L A EI+ Q+L R+ R I+ +V MG GEP N Sbjct: 117 GALGLARSLRAWEIVAQLLHVRA-----------------DSTRPITGVVFMGQGEPFLN 159 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLAISLHAVSNDLRN 252 +D V ++ D G RRI++ST+G VP I R E L +SL+A R Sbjct: 160 YDAVLEAAYTLCDPAGGRIDGRRISISTAGVVPMIRRYTAEGHKFRLCVSLNAAIPWKRR 219 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312 L+PI +PL+ L+DA R + R+T EYVM+ G+N DA L ++L GIP + Sbjct: 220 ALMPIEEGFPLDELVDAVREHAAQRG--RVTLEYVMIAGVNTGDEDAAALGRLLAGIPVR 277 Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI--RTPRGLDILAACGQLKSLSK 370 +N I N G + D+ + F + + R PI R G D AACG L S ++ Sbjct: 278 LNPIAVNDATG-RHRPPDEAEWNAFRDALARELPGQPIVRRYSGGQDEHAACGMLSSRTR 336 >gi|327543394|gb|EGF29819.1| radical SAM domain protein [Rhodopirellula baltica WH47] Length = 379 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 89/255 (34%), Positives = 137/255 (53%), Gaps = 17/255 (6%) Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172 R TLCVSSQ+GC+ C FC TG + +NL EEIL QV+ A G ++ Sbjct: 99 RTTLCVSSQIGCAAACDFCATGKMGIAKNLATEEILDQVVQA--------------GQIL 144 Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232 R++SNIV MGMGEPL N NV +++ + + S + S + +ST G + R+ Sbjct: 145 RGEDRRLSNIVFMGMGEPLHNEVNVTEAIELLTASDHFARSPSTVLVSTVGVPAGMLRLA 204 Query: 233 EEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291 + + LA+SLH+ R ++P+ +K L L D + + R EY+ML+ Sbjct: 205 KRFPNLNLALSLHSADQTTREKIIPLGKKASLTQLHDTILEIQTIQD-REFMIEYLMLRD 263 Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIV-TFSECIKRSGYSSPI 350 +NDS +DA LI + + +NLIP+N +L + + ++ +F++ +K SG + + Sbjct: 264 VNDSAKDADRLIDWIGDLRVHVNLIPYNTIEASPHLHASSRPVIESFADILKASGLKTTV 323 Query: 351 RTPRGLDILAACGQL 365 R G DI AACGQL Sbjct: 324 RYSLGNDIEAACGQL 338 >gi|87311004|ref|ZP_01093129.1| hypothetical protein DSM3645_15540 [Blastopirellula marina DSM 3645] gi|87286294|gb|EAQ78203.1| hypothetical protein DSM3645_15540 [Blastopirellula marina DSM 3645] Length = 361 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 102/286 (35%), Positives = 140/286 (48%), Gaps = 23/286 (8%) Query: 83 DGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141 DG K L R + +E+V + R LCVSSQVGC+ C FC TG + R+ Sbjct: 81 DGASKLLFRTDDGLL-----LESVILRVATGRTALCVSSQVGCAANCDFCATGKMGIARS 135 Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 L+A +IL QV+ A LL GRK+ NIV MGMGEP N V ++L Sbjct: 136 LSAPQILDQVVQANQLL--------------KPEGRKVRNIVFMGMGEPFHNTAAVHETL 181 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRK 260 G S RR +ST G + + V LA+SLH+ R ++P+ K Sbjct: 182 EKLVSPHGFDQSPRRTLVSTVGLPSAMIAFARKFPKVNLALSLHSAIQSRRTEIIPLAAK 241 Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 + L+ L A + + I EY+ML+GIND P D L L+G+P INLIP+N Sbjct: 242 FDLKELRAALDQVAAVQQ-QSIMIEYLMLRGINDGPEDRAALADYLRGLPVHINLIPYNR 300 Query: 321 WPGCEYL-CSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +L + ++D F ++ GY+ IR G D+ AACGQL Sbjct: 301 VDAAPHLEGTSKEDREAFGAALRGEGYTVTIRYSLGADVDAACGQL 346 >gi|219558900|ref|ZP_03537976.1| hypothetical protein MtubT1_16977 [Mycobacterium tuberculosis T17] Length = 238 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 92/249 (36%), Positives = 134/249 (53%), Gaps = 20/249 (8%) Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG L RNL+ EIL QV + L D G ++SN+V M Sbjct: 2 MACPFCATGQGGLTRNLSTAEILEQVRAGAAALRD-------------DFGDRLSNVVFM 48 Query: 186 GMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242 GMGEPL N+ V ++ A G S R +T+ST G P I + + +GV LA+S Sbjct: 49 GMGEPLANYARVLAAVQRITARPPSGFGISARAVTVSTVGLAPAIRNLADARLGVTLALS 108 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA + LR+ LVP+N ++ + +DA R+Y ++ RR++ EY +++ +ND P A L Sbjct: 109 LHAPDDGLRDTLVPVNNRWRISEALDAARYYANVTG-RRVSIEYALIRDVNDQPWRADLL 167 Query: 303 IKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 K L G A +NLIP NP PG ++ S + F + ++ G S +R RG +I Sbjct: 168 GKRLHRVLGPLAHVNLIPLNPTPGSDWDASPKPVEREFVKRVRAKGVSCTVRDTRGREIS 227 Query: 360 AACGQLKSL 368 AACGQL ++ Sbjct: 228 AACGQLAAV 236 >gi|299535922|ref|ZP_07049242.1| ribosomal RNA large subunit methyltransferase N [Lysinibacillus fusiformis ZC1] gi|298728674|gb|EFI69229.1| ribosomal RNA large subunit methyltransferase N [Lysinibacillus fusiformis ZC1] Length = 286 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 91/269 (33%), Positives = 151/269 (56%), Gaps = 24/269 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 KES+ + +LEE L + G R +QI+ W+Y + ++ F+ MS++S+ +R L Sbjct: 34 KESIYSLQPHQLEEWLTENG----EKPFRAAQIFDWLYNKRVKTFEEMSNLSKGLREKLT 89 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +F++ + ++ S DGT K+L + + IETV + + ++CV++QVGC Sbjct: 90 ANFALSTLSTIIKQESKDGTIKFLFQ-----LQDGYSIETVLMRHEYGNSVCVTTQVGCR 144 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC + L R+L A EI+ QV+ + L + +G ++S+IV+M Sbjct: 145 IGCTFCASTLGGLKRHLLAGEIVEQVVKVQQTLDE--------------LGERVSHIVIM 190 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLH 244 G+GEP N+D + L + + GL+ R IT+STSG VP I + E++ + A+SLH Sbjct: 191 GIGEPFDNYDAMMNFLKVINHEKGLNIGARHITVSTSGIVPKIYQFADEQLQINFAVSLH 250 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHY 273 A + + R L+PI R Y LE L+DA R+Y Sbjct: 251 APNQEARQKLMPIARAYKLEELMDAVRYY 279 >gi|266624063|ref|ZP_06116998.1| radical SAM enzyme, Cfr family [Clostridium hathewayi DSM 13479] gi|288864119|gb|EFC96417.1| radical SAM enzyme, Cfr family [Clostridium hathewayi DSM 13479] Length = 235 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 86/238 (36%), Positives = 138/238 (57%), Gaps = 19/238 (7%) Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 FC + L RNL E+L Q+ + L G+ ++SN+V+MG GE Sbjct: 1 FCASTLDGLERNLRPAEMLDQIYRIQYLTGE-----------------RVSNVVIMGSGE 43 Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248 P+ N+D+V K + + +D GL+ S+R +TLST G VP I ++ +E + + LA+SLHA ++ Sbjct: 44 PMDNYDHVVKFIRLLTDEHGLNVSQRNVTLSTCGIVPGILKLADEGLAITLALSLHAPND 103 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 ++R L+P+ + Y L +++AC Y RR+TFEY ++ G+ND+ +A L ++K Sbjct: 104 EVRKTLMPVAKSYKLNDVLEACHTYFE-KTGRRLTFEYSLVAGVNDNLEEAAALAALIKD 162 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +NLIP NP +Y+ SD+K I F ++++G + IR G DI ACGQL+ Sbjct: 163 QQGHVNLIPVNPIKERDYVQSDRKAIEAFKNLLEKNGINVTIRREMGRDIHGACGQLR 220 >gi|255100607|ref|ZP_05329584.1| florfenicol/chloramphenicol resistance protein [Clostridium difficile QCD-63q42] Length = 416 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 118/341 (34%), Positives = 168/341 (49%), Gaps = 34/341 (9%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEIVDEKISCDGTRKWLLR 91 R Q+ ++++GI F+ M + + +R L + F +++ + + + S T K L Sbjct: 20 RYKQLLDAVFLQGIMRFEDMKLLPKTLREKLVEQFGETVVEIKAIHHEKSMQ-TDKVLFE 78 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 G VE ++ E + C+SSQ GC C FC TGT L RNLT +EI Q+ Sbjct: 79 LSD---GNRVETVGLFYKE-GWNSFCISSQSGCGFGCKFCATGTLGLRRNLTVDEITDQI 134 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 L GC I++I MGMGEP N V ++L + Sbjct: 135 LYFMQ-----QGCS-------------INSISFMGMGEPFAN-PQVFEALHDLTAPELFG 175 Query: 212 FSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 S+RRIT+ST G VP I ++ E V LA SLHA ++ LR L+PI + YPL ++D Sbjct: 176 LSQRRITISTIGIVPGIQKLTREYPQVNLAYSLHAPTDRLRETLMPITKTYPLGQVLDTL 235 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL----KGIP-AKINLIPFNPWPGCE 325 + +N R++ Y+MLK +NDS R A L K+L K +P ++LIP+N E Sbjct: 236 DQHIRQTN-RKVFLAYIMLKDVNDSDRHAEQLTKLLFKHKKYLPLYHLDLIPYNQTTVTE 294 Query: 326 YLC-SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + S I F I +G S IRT G DI AACGQL Sbjct: 295 TMVPSSHTRIKAFCRIIHNAGISVNIRTQFGSDINAACGQL 335 >gi|15230899|ref|NP_188597.1| radical SAM domain-containing protein [Arabidopsis thaliana] gi|28393068|gb|AAO41968.1| unknown protein [Arabidopsis thaliana] gi|28827394|gb|AAO50541.1| unknown protein [Arabidopsis thaliana] gi|332642748|gb|AEE76269.1| radical SAM domain-containing protein [Arabidopsis thaliana] Length = 372 Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 119/359 (33%), Positives = 171/359 (47%), Gaps = 46/359 (12%) Query: 37 QIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLL------ 90 QIWK++ + + + LL+ F + + S DGT LL Sbjct: 28 QIWKYVIQNPDCVWDEIPSLPSAAYSLLHSKFKTLTSSLHSLFHSSDGTTSKLLIKLQNG 87 Query: 91 --------RFPARC--IGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVR 140 R+ R +GG P R TLC+SSQVGC + C+FC TGT Sbjct: 88 AFVEAVVMRYDTRLGMLGGKPR------PGGIRSTLCISSQVGCKMGCTFCATGTMGFKS 141 Query: 141 NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKS 200 NLT+ EI+ Q++ A S + D I NIV MGMGEPL N++ V ++ Sbjct: 142 NLTSGEIVEQLVHA-SRIAD------------------IRNIVFMGMGEPLNNYNAVVEA 182 Query: 201 LSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINR 259 + + + S +RIT+ST G V I ++ ++ GV LA+SLHA ++R ++P R Sbjct: 183 VRVMLNQ-PFQLSPKRITISTVGIVHAINKLHNDLPGVSLAVSLHAPVQEIRCQIMPAAR 241 Query: 260 KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFN 319 +PL+ L+DA + + S ++I EY+ML G+ND + A L ++LK INLIPFN Sbjct: 242 AFPLQKLMDALQTFQKNSQ-QKIFIEYIMLDGVNDQEQHAHLLGELLKTFQVVINLIPFN 300 Query: 320 PWPGCEYLCSDQKDIVTFSECIKRSGYS--SPIRTPRGLDILAACGQLKSLSKRIPKVP 376 P + V+ + I R Y + IR G DI ACGQL I K P Sbjct: 301 PIGSTSQFETSSIQGVSRFQKILRETYKIRTTIRKEMGQDISGACGQLVVNQPDIKKTP 359 >gi|205829721|sp|Q2IHD1|Y4229_ANADE RecName: Full=Probable RNA methyltransferase Adeh_4229 Length = 338 Score = 152 bits (385), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 106/298 (35%), Positives = 149/298 (50%), Gaps = 32/298 (10%) Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSFCY 132 E VD K DG RK+L P + +ETV IP + +C+SSQ GC+L C+FC Sbjct: 64 ESVDAK---DGFRKYLFELP-----DGLRVETVRIPLYDTHHVVCLSSQAGCALGCAFCA 115 Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192 T L R+L + E++ Q+L R+ D E R I+ +V MG GEP Sbjct: 116 TAKLGLDRSLRSWEMVSQLLAVRA---------DSE--------RPITGVVFMGQGEPFL 158 Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLAISLHAVSNDLR 251 N+D V + D G RRI++ST+G VP I R E L ISL+A R Sbjct: 159 NYDEVLAAAYALCDPAGARIDARRISISTAGVVPMIRRYTAEGHKFRLCISLNAAMPWKR 218 Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311 L+P+ + +PL+ L++A R + L R+T EYVM+ G+N DA L ++L GIP Sbjct: 219 RALMPVEQGFPLDELVEAIREHAALRG--RVTLEYVMISGVNVGEEDAAALGRLLAGIPV 276 Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI--RTPRGLDILAACGQLKS 367 ++N I N G Y D+ + F + + R +P+ R G D AACG L S Sbjct: 277 RLNPIAVNDASG-RYRPPDEDEWNAFRDALARELPGTPVVRRYSGGQDEHAACGMLAS 333 >gi|86160645|ref|YP_467430.1| ribosomal RNA large subunit methyltransferase N [Anaeromyxobacter dehalogenans 2CP-C] gi|85777156|gb|ABC83993.1| Radical SAM [Anaeromyxobacter dehalogenans 2CP-C] Length = 309 Score = 152 bits (384), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 106/298 (35%), Positives = 149/298 (50%), Gaps = 32/298 (10%) Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSFCY 132 E VD K DG RK+L P + +ETV IP + +C+SSQ GC+L C+FC Sbjct: 35 ESVDAK---DGFRKYLFELP-----DGLRVETVRIPLYDTHHVVCLSSQAGCALGCAFCA 86 Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192 T L R+L + E++ Q+L R+ D E R I+ +V MG GEP Sbjct: 87 TAKLGLDRSLRSWEMVSQLLAVRA---------DSE--------RPITGVVFMGQGEPFL 129 Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLAISLHAVSNDLR 251 N+D V + D G RRI++ST+G VP I R E L ISL+A R Sbjct: 130 NYDEVLAAAYALCDPAGARIDARRISISTAGVVPMIRRYTAEGHKFRLCISLNAAMPWKR 189 Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311 L+P+ + +PL+ L++A R + L R+T EYVM+ G+N DA L ++L GIP Sbjct: 190 RALMPVEQGFPLDELVEAIREHAALRG--RVTLEYVMISGVNVGEEDAAALGRLLAGIPV 247 Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI--RTPRGLDILAACGQLKS 367 ++N I N G Y D+ + F + + R +P+ R G D AACG L S Sbjct: 248 RLNPIAVNDASG-RYRPPDEDEWNAFRDALARELPGTPVVRRYSGGQDEHAACGMLAS 304 >gi|197124743|ref|YP_002136694.1| ribosomal RNA large subunit methyltransferase N [Anaeromyxobacter sp. K] gi|196174592|gb|ACG75565.1| Radical SAM domain protein [Anaeromyxobacter sp. K] Length = 338 Score = 152 bits (384), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 106/298 (35%), Positives = 149/298 (50%), Gaps = 32/298 (10%) Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSFCY 132 E VD + DG RK+L P + +ETV IP + +C+SSQ GC+L C+FC Sbjct: 64 EAVDAR---DGFRKYLFELP-----DGLRVETVRIPLFDTHHVVCLSSQAGCALGCAFCA 115 Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192 T L R+L + E++ Q+L R+ D E R I+ +V MG GEP Sbjct: 116 TAKLGLDRSLRSWEMVSQLLAVRA---------DSE--------RPITGVVFMGQGEPFL 158 Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLAISLHAVSNDLR 251 N+D V + D G RRI++ST+G VP I R E L ISL+A R Sbjct: 159 NYDEVLAAAYALCDPAGARIDARRISISTAGVVPMIRRYTAEGHKFRLCISLNAAMPWKR 218 Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311 L+P+ + +PL+ L++A R + L R+T EYVM+ G+N DA L ++L GIP Sbjct: 219 RALMPVEQGFPLDELVEAIREHAALRG--RVTLEYVMISGVNVGEEDAAALGQLLAGIPV 276 Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI--RTPRGLDILAACGQLKS 367 ++N I N G Y D+ + F + + R +PI R G D AACG L S Sbjct: 277 RLNPIAVNDASG-RYRPPDEDEWNAFRDALARELPGTPIVRRYSGGQDEHAACGMLAS 333 >gi|84997417|ref|XP_953430.1| hypothetical protein [Theileria annulata strain Ankara] gi|65304426|emb|CAI76805.1| hypothetical protein, conserved [Theileria annulata] Length = 399 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 124/373 (33%), Positives = 177/373 (47%), Gaps = 67/373 (17%) Query: 25 GIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEIVDEKISC 82 +PQ R SQI+ IY +F M + + +R L+ +F S++ V E S Sbjct: 18 SVPQ----YRLSQIFNSIYRNKTPNFLSMYHLPKILRSGLHDNFEGSLLSLNPVSESNS- 72 Query: 83 DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNL 142 D +K L + IE V + + +LC+S+QVGCS CSFC TG L RNL Sbjct: 73 DRAKKVLFQ-----NSDGSRIEAVLLHFNTHKSLCISAQVGCSYACSFCATGKIGLKRNL 127 Query: 143 TAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS 202 T +EI QVL + L G KI +I MGMGEPL N NV KS++ Sbjct: 128 TVDEITDQVLYFQQL------------------GHKIDSISFMGMGEPLSN-PNVFKSIN 168 Query: 203 IASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKY 261 I +D + S RRI +ST G +P I ++ +E V LA SLH+ + RN +VP+N Y Sbjct: 169 ILTDKRYFALSPRRINVSTVGILPGIKKLNKEYPYVNLAYSLHSPFTEERNEMVPVNLLY 228 Query: 262 PLEMLIDACRHYPGLS-----NARRITFEYVMLKGINDSPRDALNLIKILKGIPAK---- 312 P + YP + RRI Y+++K ND+ LI I+KG P + Sbjct: 229 PFQ------EAYPLMDERIRQTGRRIWISYILIKDKNDTKEHVEELINIIKGRPKEVQYL 282 Query: 313 --INLIPFN---PW-----PGCEYLC----------SDQKDIVTFSECIKRSGYSSPIRT 352 +NLIP+N P +LC ++ + F + ++++G S R Sbjct: 283 YHVNLIPYNIGMPQILVLTHQTTFLCLVKSIDKYESTEHDQSLKFEKYLRKNGISCSYRN 342 Query: 353 PRGLDILAACGQL 365 G +I AACGQL Sbjct: 343 YFGRNIDAACGQL 355 >gi|220919464|ref|YP_002494768.1| Radical SAM domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219957318|gb|ACL67702.1| Radical SAM domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 338 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 105/298 (35%), Positives = 149/298 (50%), Gaps = 32/298 (10%) Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSFCY 132 E VD + DG RK+L P + +ETV IP + +C+SSQ GC+L C+FC Sbjct: 64 EAVDAR---DGFRKYLFELP-----DGLRVETVRIPLFDTHHVVCLSSQAGCALGCAFCA 115 Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192 T L R+L + E++ Q+L R+ D E R I+ +V MG GEP Sbjct: 116 TAKLGLDRSLRSWEMVAQLLAVRA---------DSE--------RPITGVVFMGQGEPFL 158 Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLAISLHAVSNDLR 251 N+D V + D G RRI++ST+G VP I R E L ISL+A R Sbjct: 159 NYDEVLTAAYALCDPAGARIDARRISISTAGVVPMIRRYTAEGHKFRLCISLNAAMPWKR 218 Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311 L+P+ + +PL+ L++A R + L R+T EYVM+ G+N DA L ++L GIP Sbjct: 219 RALMPVEQGFPLDELVEAIREHAALRG--RVTLEYVMISGVNVGEEDAAALGQLLAGIPV 276 Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI--RTPRGLDILAACGQLKS 367 ++N I N G Y D+ + F + + R +P+ R G D AACG L S Sbjct: 277 RLNPIAVNDASG-RYCPPDEDEWNAFRDALARELPGTPVVRRYSGGQDEHAACGMLAS 333 >gi|226498566|ref|NP_001144705.1| hypothetical protein LOC100277741 [Zea mays] gi|195646072|gb|ACG42504.1| hypothetical protein [Zea mays] Length = 381 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 112/346 (32%), Positives = 162/346 (46%), Gaps = 43/346 (12%) Query: 38 IWKWIYVRG-IRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARC 96 IWK++ D G+ + LL Q F + S D T LL C Sbjct: 37 IWKYVLQNPRCSDLDGVPSLPAAAYALLRQKFRPTTSTLTAAADSKDRTTTKLLI----C 92 Query: 97 IGGPVEIETVYI--------------PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNL 142 + +E V + P R TLCVSSQVGC + C FC TGT NL Sbjct: 93 LQNGESVEAVVMRYDTRLGKYDGKPRPGGVRSTLCVSSQVGCKMGCRFCATGTMGFKSNL 152 Query: 143 TAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS 202 ++ EI +E +V S +I N+V MGMGEP+ N++ + +++ Sbjct: 153 SSGEI-------------------VEQLVHASRYSQIRNVVFMGMGEPMNNYNALVEAIG 193 Query: 203 IASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKY 261 + + S S +RIT+ST G + I + G+ V LA+SLHA D+R ++P R + Sbjct: 194 VFTGS-PFQLSPKRITVSTVGIIHGINKFNGDLPKVNLAVSLHAPDQDIRCQIMPAARAF 252 Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP- 320 PL L++A + Y S + I EY+ML G+ND A L K+L+ A +NLIPFNP Sbjct: 253 PLGKLMNALQSYQNESK-QTIFIEYIMLDGVNDQEEHAHQLGKLLETFKAVVNLIPFNPI 311 Query: 321 WPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLDILAACGQL 365 + S +++ F + +K + IR G DI ACGQL Sbjct: 312 GSSSNFKTSSDQNVKNFQKVLKGIYRIRTTIRQQMGQDIAGACGQL 357 >gi|328773686|gb|EGF83723.1| hypothetical protein BATDEDRAFT_3639 [Batrachochytrium dendrobatidis JAM81] Length = 368 Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 110/379 (29%), Positives = 187/379 (49%), Gaps = 56/379 (14%) Query: 17 LEEALLKIGIPQRHVRMRTSQ-IWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75 L+E +LK ++ + +Q +W++ R + F + ++ ++ +L F+ + ++ Sbjct: 4 LDEGMLKEAFNLHNISPKHAQKLWRYFIQRNAKSFTDVPELPKQALQILESDFTPMTSKV 63 Query: 76 VDEKISCDGTRKWLL--------------RFP--ARCIGGPVEIETVYIPEKSRGTLCVS 119 + + DG+ LL R+ + + G ++ + R TLCVS Sbjct: 64 ISRTDNADGSTTKLLVELQDGQRIESVIMRYEKMTKDMDGNIKYRS-----NKRATLCVS 118 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 SQVGC++ C+FC TGT L+ NL+A EIL Q++ A + I Sbjct: 119 SQVGCAMGCTFCATGTMGLLANLSAGEILEQLVHANQV-------------------EHI 159 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP---NIARVGEEIG 236 N+V MGMGEPL N+ V +++ D+ S RI++ST G VP ++ R +IG Sbjct: 160 RNVVFMGMGEPLDNYPAVLMAVNGMIDTSRFGLSPSRISVSTVGVVPRMRSLVRDMPDIG 219 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA--------RRITFEYVM 288 LA+SLHA + +LR +VP + + +E +++A + NA + + EYV+ Sbjct: 220 --LALSLHAPTQELRTQIVPTAKAWNIERIMEAADVFIAQQNANVKSHNRRKHVLIEYVL 277 Query: 289 LKGINDSPRDALNLIKILKGIPAKINLIPFNPWP-GCEYLCSDQKDIVTFSECIKR-SGY 346 + INDS A L K+L+G +N+IP+NP +Y Q+ + F + ++R Sbjct: 278 IADINDSEVVAHQLGKLLEGRDVLLNVIPYNPTSVPYDYKPPLQETMKVFVDIVRRVYNV 337 Query: 347 SSPIRTPRGLDILAACGQL 365 + +R G DI +ACGQL Sbjct: 338 HTLLRQELGQDISSACGQL 356 >gi|160880358|ref|YP_001559326.1| radical SAM protein [Clostridium phytofermentans ISDg] gi|205829630|sp|A9KK15|CFR_CLOPH RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr; AltName: Full=23S rRNA m8A2503 methyltransferase gi|160429024|gb|ABX42587.1| radical SAM enzyme, Cfr family [Clostridium phytofermentans ISDg] Length = 344 Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 115/363 (31%), Positives = 179/363 (49%), Gaps = 43/363 (11%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 E +++ + + +P R QI K I+ + F+ MS + E++ L F P Sbjct: 7 ETMKQLIADMKLPD----YRYEQIIKAIFSQHTSTFEKMSTLPLELKKSLINTFG---PS 59 Query: 75 IV-DEKISCDGT---RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130 + ++C + K L P G VE ++ +K + C+SSQ GC C F Sbjct: 60 VCCTVPVACQTSGQADKILFSLPD---GNRVETVNLHY-KKGWESFCISSQCGCGFGCQF 115 Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 C TGT RN+TA+EI Q+L G K+++I MGMGEP Sbjct: 116 CATGTLGHKRNMTADEITDQLL------------------YFHLNGHKLNSISFMGMGEP 157 Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSND 249 L N N+ +L+I +DS S+RRIT+ST G +P I R+ E + LA SLH+ + Sbjct: 158 LAN-PNLFDALNILNDSSLFGLSQRRITISTIGIIPGIKRLTHEFPQINLAYSLHSPFEN 216 Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK-- 307 R+ L+P+NR +PL +++A ++ RR+ Y+ML G+NDS A L+++L+ Sbjct: 217 QRSELMPVNRSFPLHEVMNALDNHI-RHTGRRLFLAYIMLNGVNDSVDHAKALVELLQDR 275 Query: 308 ---GIPAKINLIPFNPWPGC--EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LIP+N ++ SD+ + F + + +G S RT G DI AAC Sbjct: 276 GPWAHLYHVDLIPYNATDKTPRKFASSDKITMKRFRDILHANGISVATRTQFGSDISAAC 335 Query: 363 GQL 365 GQL Sbjct: 336 GQL 338 >gi|226314089|ref|YP_002773985.1| chloramphenicol/florfenicol resistance protein [Brevibacillus brevis NBRC 100599] gi|226097039|dbj|BAH45481.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 343 Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 113/346 (32%), Positives = 174/346 (50%), Gaps = 43/346 (12%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD----EKISCDGTRKWL 89 R +QI I+ + I +++ M+ + + +R LN+ I+ P + ++++ K L Sbjct: 23 RYAQIMDAIFKQNIGEYERMTILPKFLRDELNR---ILGPNVCSIAPVKELTSKQVSKVL 79 Query: 90 LRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 P G ++E V + E+ + C+S+Q GC C FC TGT L RNLTA+EI Sbjct: 80 FAIP-----GDEQVEAVRLTYERGWKSYCISTQCGCGFRCKFCATGTIGLKRNLTADEIT 134 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 Q+L R G + +I MGMGE L N ++ ++++I +D Sbjct: 135 DQLLYFR------------------LNGHSLDSISFMGMGEALAN-PHIFEAMTILTDPY 175 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPL-EML 266 RRIT+ST G +P I ++ E V L SLH+ +D R+ L+PIN ++P+ ++L Sbjct: 176 LFGLGHRRITISTIGLLPGIDKLTREFPQVNLTFSLHSPFDDQRSELMPINDRFPVRDVL 235 Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-----KINLIPFNPW 321 I RH R++ Y++L+G+NDS A + ++L+G A +NLIPFN Sbjct: 236 IALDRHIR--ETGRKVYIAYILLRGVNDSTAHAEAVAELLRGRGAWEHLYHVNLIPFNST 293 Query: 322 PGC--EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 Y SD I F +K G S +RT G DI AACGQL Sbjct: 294 EVTPDSYRQSDPSRIKAFVRILKSRGISVTVRTQFGSDINAACGQL 339 >gi|23004907|ref|ZP_00047999.1| COG0820: Predicted Fe-S-cluster redox enzyme [Magnetospirillum magnetotacticum MS-1] Length = 232 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 94/239 (39%), Positives = 130/239 (54%), Gaps = 16/239 (6%) Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172 R TLCVSSQ GC + C FC TG L RNL+ EI+ QV A L D I Sbjct: 4 RSTLCVSSQAGCGMACPFCATGQLGLTRNLSVAEIVEQVRSAARSLADGE---------I 54 Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIAR 230 P +++N+V MGMGEPL N+ V ++ +A GL S R IT+ST G VP + + Sbjct: 55 PGGPARLNNLVFMGMGEPLANYKAVMGTVRRLVAPAPDGLGMSARNITVSTVGLVPAMRK 114 Query: 231 VGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 + +E I V LA+SLHA +DLR+ LVPIN ++ ++ +DA RHY ++ RR++ EY ++ Sbjct: 115 LADEGIPVTLALSLHAPDDDLRSELVPINTRWSVDETLDAARHYFEVT-GRRVSIEYALI 173 Query: 290 KGINDSPRDALNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSG 345 K +ND A L + L +N IP NP PG + SD F ++ G Sbjct: 174 KDMNDHAWRADLLGEKLNARGRGWVHVNPIPLNPTPGSIWTGSDPAVEAEFVARLRGHG 232 >gi|219114843|ref|XP_002178217.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217409952|gb|EEC49882.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 296 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 116/311 (37%), Positives = 160/311 (51%), Gaps = 35/311 (11%) Query: 76 VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP--EKSRGTLCVSSQVGCSLTCSFCYT 133 V E ++ DGT K LL+ + G +++ETV IP E+ R TLCVSSQVGC C+FC T Sbjct: 1 VHESVAADGTTKLLLQL----VDG-LQVETVIIPWDERQRSTLCVSSQVGCRQACTFCLT 55 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 G ++R+L+A+EIL+QVLLA+ C E + P I NIV MGMGEP N Sbjct: 56 GRMGILRSLSADEILVQVLLAKR------ACR--ENNIYP-----IDNIVFMGMGEPADN 102 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNI 253 D V ++ ++ + + RRIT+ST P+ + V LA S+HA +R Sbjct: 103 TDAVVRAANVLTHQQQFQLTPRRITISTVAPSPDAFLKLGKAPVALAWSVHASREAVRRE 162 Query: 254 LVPINRKYPLEMLIDA-CRHYPGLSNARRIT-FEYVMLKGINDSPRDALN-------LIK 304 LVP KY +E L + + S + R T E +L INDS DA + L+K Sbjct: 163 LVPTT-KYTMEELREGYIKALLDRSRSMRTTMLEVTLLDKINDSLEDAEHLADFCQPLLK 221 Query: 305 ILKGIPAKINLIPFNP-----WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 + GI +NLIP+N P Y + I F + + G +RT RG D Sbjct: 222 SVPGIKLVVNLIPWNDISASFGPASVYRKPTTERIGEFQKALIGRGILCYVRTTRGDDEG 281 Query: 360 AACGQLKSLSK 370 AACGQL + +K Sbjct: 282 AACGQLATTNK 292 >gi|207723161|ref|YP_002253560.1| hypothetical protein 48 [Ralstonia solanacearum MolK2] gi|206588355|emb|CAQ35318.1| conserved hypothetical protein 48 [Ralstonia solanacearum MolK2] Length = 396 Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 75/160 (46%), Positives = 103/160 (64%) Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEM 265 D S+RR+TLSTSG VP + R+ ++ V LA+SLHA ++ LR++LVP+N+KYPL Sbjct: 201 DDNAYGLSRRRVTLSTSGVVPMMDRLSRDLPVALAVSLHASNDALRDVLVPLNKKYPLAE 260 Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE 325 L+ ACR Y + ITFEY ML G+NDS A L++++ +P K NLIPFNP+P Sbjct: 261 LMAACRRYLEFAPRDFITFEYCMLDGVNDSIEHARELLRVIADVPCKFNLIPFNPFPESG 320 Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 S+ + I FS+ + +G + IR RG DI AACGQL Sbjct: 321 LKRSNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDAACGQL 360 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 52/119 (43%), Positives = 75/119 (63%), Gaps = 5/119 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +WI+ G DF M+D+++ +R L +I P ++ + +S DGTRKWL+ Sbjct: 27 FRAKQLQRWIHQSGAADFGEMTDLAKSLREKLATRATIQAPAVISDHLSSDGTRKWLVD- 85 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 +G +ETVYIPE++RGTLCVSSQ GC++ C FC TG Q RNL+ EI+ Q+ Sbjct: 86 ----VGAGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIVGQL 140 >gi|224060769|ref|XP_002300266.1| predicted protein [Populus trichocarpa] gi|222847524|gb|EEE85071.1| predicted protein [Populus trichocarpa] Length = 373 Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 106/346 (30%), Positives = 171/346 (49%), Gaps = 44/346 (12%) Query: 38 IWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARC 96 IWK++ ++ + D+ LL F + S DG T K L++ Sbjct: 29 IWKYVIKNPNCEWDDIPDLPSAAYSLLRSKFKTSTSSVDSVINSNDGVTTKLLVKLQNGA 88 Query: 97 IGGPVEIETVYI--------------PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNL 142 +E V + P R TLC+SSQVGC + C FC TG+ NL Sbjct: 89 F-----VEAVIMRYDTRLGKYCGKPRPGGPRSTLCISSQVGCKMGCKFCATGSMGFKNNL 143 Query: 143 TAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS 202 ++ EI+ Q++ A L +I N+V MGMGEPL N+ + +++ Sbjct: 144 SSGEIVEQLVHASCL-------------------SQIRNVVFMGMGEPLNNYSALVEAVR 184 Query: 203 IASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKY 261 A + S +RIT+ST G + I ++ +++ G+ LA+SLHA D+R ++P R + Sbjct: 185 -AMSGVPFQLSPKRITVSTVGIIHAINKLHKDLPGLNLAVSLHAPVQDVRCQIMPAARAF 243 Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPW 321 PLE L+DA + Y ++ ++I EY+ML G+ND + A L K+L+ +NLIPFNP Sbjct: 244 PLEKLMDALQVYQK-NSMQKIFIEYIMLDGVNDEEQHAHQLGKLLETFDVVVNLIPFNPI 302 Query: 322 PG-CEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLDILAACGQL 365 ++ S ++ ++ F + ++ + + +R G DI ACGQL Sbjct: 303 GSLSQFRTSSEEKVLRFQKILRGVNNIRTTVRKQMGQDISGACGQL 348 >gi|225428987|ref|XP_002265287.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|147817733|emb|CAN60150.1| hypothetical protein VITISV_044331 [Vitis vinifera] gi|296083052|emb|CBI22456.3| unnamed protein product [Vitis vinifera] Length = 372 Score = 149 bits (376), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 91/260 (35%), Positives = 137/260 (52%), Gaps = 24/260 (9%) Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168 P R TLC+SSQVGC + C FC TG+ NL++ EI+ Q++ A Sbjct: 110 PGGPRSTLCISSQVGCKMGCKFCATGSMGFKSNLSSGEIVEQLVHASHF----------- 158 Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228 +I N+V MGMGEPL N+ + +++ I S S ++IT+ST G + I Sbjct: 159 --------SQIRNVVFMGMGEPLNNYSALVEAIHIMQGS-PFQLSPKKITVSTVGIIHAI 209 Query: 229 ARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 ++ ++ + LA+SLHA D+R ++P R +PLE L+D R Y ++ ++I EY+ Sbjct: 210 NKLQSDLPNLNLAVSLHAPVQDIRCQIMPAARAFPLEKLMDTLRTYQ-TNSGQKIFIEYI 268 Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYS 347 ML +ND + A L K+L+ +NLIPFNP Y + + V + I R Y+ Sbjct: 269 MLDEVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGNLSYFKTSSEQKVARFQKILRGTYN 328 Query: 348 --SPIRTPRGLDILAACGQL 365 + +R G DI ACGQL Sbjct: 329 IRTTVRKQMGQDISGACGQL 348 >gi|255080924|ref|XP_002504028.1| predicted protein [Micromonas sp. RCC299] gi|226519295|gb|ACO65286.1| predicted protein [Micromonas sp. RCC299] Length = 485 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 108/318 (33%), Positives = 158/318 (49%), Gaps = 17/318 (5%) Query: 56 ISQEVRHLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRG 114 I + R + + F++I I D + S DG T K ++ G VE V +K R Sbjct: 66 IPKFARDQIPERFALITTTIADCQTSKDGSTTKMVVELQD---GHRVE-SVVMRHDKGRV 121 Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD---FPGCEDIEGMV 171 TLCVSSQVGC + C+FC TGT + NLT+ EIL Q++ A L D G + G Sbjct: 122 TLCVSSQVGCKMGCTFCATGTLGELGNLTSGEILEQLVHANRLFNDDGTGAGLRRVSG-- 179 Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR- 230 + N+V MGMGEPL N+D V ++ +D + + R+T+ST G VP + R Sbjct: 180 ---TAHGVRNLVFMGMGEPLNNYDAVVGAIGPMTDPNAFALAPSRVTVSTVGVVPKMRRL 236 Query: 231 VGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 V + GV LA+SLHA + LR +VP Y L ++ A Y R EY +L Sbjct: 237 VRDAPGVCLALSLHAPNQRLREKIVPTATAYKLPDILSALDEYLATGPKVRTMIEYCVLG 296 Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRSGYS-- 347 G+ND+ A L ++++ +NLIP+NP + +D+ + ++ Sbjct: 297 GVNDTTECARELGELMRHRDVIVNLIPYNPTATPMGHSPPKMEDVRAMCAVLTGPEFNQF 356 Query: 348 SPIRTPRGLDILAACGQL 365 + +R G DI ACGQL Sbjct: 357 TTVRHEMGQDISGACGQL 374 >gi|312903419|ref|ZP_07762599.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0635] gi|310633295|gb|EFQ16578.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0635] Length = 349 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 109/341 (31%), Positives = 175/341 (51%), Gaps = 33/341 (9%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93 R QI I+ I +F ++ + + +R +L + F IV K + T+ + F Sbjct: 23 RMKQITNAIFPGRINNFNEITVLPKSLRDMLIEEFGESILNIVPLK-AQQSTQVSKVLFG 81 Query: 94 ARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 I G +IETV + K+ + C+SSQ GC+ C FC TG L RNLT++EI Q+L Sbjct: 82 ---ISGDEKIETVNMKYKAGWESFCISSQCGCNFGCKFCATGDIGLKRNLTSDEITDQIL 138 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 G I +I MGMGE L N V +L++ +D + Sbjct: 139 Y------------------FHLQGHSIDSISFMGMGEALANVQ-VFDALNVLTDPALFAL 179 Query: 213 SKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S RR+++ST G +PNI ++ + V L SLH+ N+ R+ L+PIN +YPL ++D Sbjct: 180 SPRRLSISTIGIIPNIKKLTQNYPQVNLTFSLHSPFNEQRSELMPINERYPLSDVMDTLD 239 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP-----AKINLIPFNPWPGC-- 324 + ++ +R++ Y+ML G+NDS A ++ +L+G +N+I +NP Sbjct: 240 EHIRVT-SRKVYIAYIMLHGVNDSIEHAKEVVNLLRGRYRSGNLYHVNIIRYNPTVSSRM 298 Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + +++K +V F + +K +G IR+ G+DI AACGQL Sbjct: 299 RFEEANEKCLVNFYKELKSAGIKVTIRSQFGIDIDAACGQL 339 >gi|242036573|ref|XP_002465681.1| hypothetical protein SORBIDRAFT_01g043670 [Sorghum bicolor] gi|241919535|gb|EER92679.1| hypothetical protein SORBIDRAFT_01g043670 [Sorghum bicolor] Length = 381 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 94/260 (36%), Positives = 138/260 (53%), Gaps = 24/260 (9%) Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168 P R TLCVSSQVGC + C FC TGT NL++ EI IE Sbjct: 119 PGGLRSTLCVSSQVGCKMGCRFCATGTMGFKSNLSSGEI-------------------IE 159 Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228 +V S +I N+V MGMGEP+ N++ + +++ + + S S +RIT+ST G + I Sbjct: 160 QLVHASRYSQIRNVVFMGMGEPMNNYNALVEAIGVFTGS-PFQLSPKRITVSTVGIIHGI 218 Query: 229 ARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 + ++ V LA+SLHA D+R ++P R +PL L++A + Y S + I EY+ Sbjct: 219 NKFNADLPKVNLAVSLHAPDQDIRCQIMPAARAFPLVKLMNALQSYQNESK-QTIFIEYI 277 Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRSGY 346 ML G+ND A L K+L+ A +NLIPFNP + S +++ F + +K + Sbjct: 278 MLDGVNDQEEHAHQLGKLLETFKAVVNLIPFNPIGSLSNFKTSSDQNVKKFQKVLKGIYH 337 Query: 347 -SSPIRTPRGLDILAACGQL 365 + +R G DI ACGQL Sbjct: 338 IRTTVRQQMGQDIAGACGQL 357 >gi|255074899|ref|XP_002501124.1| predicted protein [Micromonas sp. RCC299] gi|226516387|gb|ACO62382.1| predicted protein [Micromonas sp. RCC299] Length = 368 Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 119/384 (30%), Positives = 181/384 (47%), Gaps = 57/384 (14%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 +E+E GI + +R+ ++ ++ RG F+ D+S LL +F++ E Sbjct: 7 DEVERFARDRGIKKSSLRL----CYRELFRRGKSTFENAPDVSARDMKLLRDNFTVCTSE 62 Query: 75 IVDEKISCDGT-RKWLLRF-----------------------PARCIGGPVEIETVYIPE 110 +V+ K + DG+ K ++R R G ++ Sbjct: 63 VVETKTTEDGSGAKMVVRLHDGKLVETVVIGHSRSVDDGDGDETRGDGEDADVSDGAKNR 122 Query: 111 KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 R T+CVSSQVGC++ C+FC TGT L+ NLTA EI QV AR+L G Sbjct: 123 VFRNTVCVSSQVGCAMGCTFCETGTLGLMANLTAGEICEQVWHARNLCG----------- 171 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230 S G + N+VMMGMGEPL N++ V +L + +R +T+ST G +I R Sbjct: 172 ---STG--VRNVVMMGMGEPLDNYEEVLIALRAMTHQAVFDMRQRSVTVSTVGVPASIRR 226 Query: 231 VGEEI-GVMLAISLHAVSNDLRNILVP--INRKYPLEMLIDACRHYPGLSNARRITFEYV 287 + ++ V LA+SLHA + DLR L+P + L L ++ R++ S R EY+ Sbjct: 227 LADDAPNVGLALSLHAPTQDLRATLLPSAAGTSHTLGRLTESLRYHRQKS-GRGAMIEYI 285 Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP--GCEYLCSDQKDIVTFSECI--KR 343 ++ G+NDSP A L ++ +NLIP+NP G S D + I Sbjct: 286 VIDGVNDSPTHARELGELSGYF---VNLIPYNPTDVGGTHGYRSPADDALERMASILGDE 342 Query: 344 SGYSSPIR--TPRGLDILAACGQL 365 G + +R T RG ++ ACGQL Sbjct: 343 FGVKAKVRWSTRRGREVDGACGQL 366 >gi|218192280|gb|EEC74707.1| hypothetical protein OsI_10424 [Oryza sativa Indica Group] Length = 388 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 95/260 (36%), Positives = 136/260 (52%), Gaps = 24/260 (9%) Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168 P R TLCVSSQVGC + C FC TGT NL++ EI +E Sbjct: 126 PGGVRSTLCVSSQVGCKMGCRFCATGTMGFKSNLSSGEI-------------------VE 166 Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228 +V S +I N+V MGMGEPL N+ + +++ + S S +RIT+ST G + +I Sbjct: 167 QLVHASRYSQIRNVVFMGMGEPLNNYTALVEAIQVLIGS-PFQLSPKRITVSTVGIIHSI 225 Query: 229 ARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 + ++ + LA+SLHA D+R ++P R +PL L++A + Y S + I EY+ Sbjct: 226 NKFNNDLPNINLAVSLHAPDQDIRCHIMPAARAFPLVKLMNALQSYQNESK-QTIFIEYI 284 Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYS 347 ML G+ND + A L K+L+ A +NLIPFNP + + V + I R Y+ Sbjct: 285 MLDGVNDQEQHAHQLGKLLEMFKAVVNLIPFNPIGSSNNFKTSSEHNVKKFQKILRGIYN 344 Query: 348 --SPIRTPRGLDILAACGQL 365 + IR G DI ACGQL Sbjct: 345 IRTTIRQQMGQDIAGACGQL 364 >gi|115451403|ref|NP_001049302.1| Os03g0202300 [Oryza sativa Japonica Group] gi|108706720|gb|ABF94515.1| radical SAM enzyme, Cfr family protein, expressed [Oryza sativa Japonica Group] gi|113547773|dbj|BAF11216.1| Os03g0202300 [Oryza sativa Japonica Group] Length = 388 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 95/260 (36%), Positives = 136/260 (52%), Gaps = 24/260 (9%) Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168 P R TLCVSSQVGC + C FC TGT NL++ EI +E Sbjct: 126 PGGVRSTLCVSSQVGCKMGCRFCATGTMGFKSNLSSGEI-------------------VE 166 Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228 +V S +I N+V MGMGEPL N+ + +++ + S S +RIT+ST G + +I Sbjct: 167 QLVHASRYSQIRNVVFMGMGEPLNNYTALVEAIQVLIGS-PFQLSPKRITVSTVGIIHSI 225 Query: 229 ARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 + ++ + LA+SLHA D+R ++P R +PL L++A + Y S + I EY+ Sbjct: 226 NKFNNDLPNINLAVSLHAPDQDIRCHIMPAARAFPLVKLMNALQSYQNESK-QTIFIEYI 284 Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYS 347 ML G+ND + A L K+L+ A +NLIPFNP + + V + I R Y+ Sbjct: 285 MLDGVNDQEQHAHQLGKLLEMFKAVVNLIPFNPIGSSNNFKTSSEHNVKKFQKILRGIYN 344 Query: 348 --SPIRTPRGLDILAACGQL 365 + IR G DI ACGQL Sbjct: 345 IRTTIRQQMGQDIAGACGQL 364 >gi|187776707|ref|ZP_02993180.1| hypothetical protein CLOSPO_00222 [Clostridium sporogenes ATCC 15579] gi|187775366|gb|EDU39168.1| hypothetical protein CLOSPO_00222 [Clostridium sporogenes ATCC 15579] Length = 344 Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 109/342 (31%), Positives = 164/342 (47%), Gaps = 37/342 (10%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93 R Q+ K I+ + I +F+ M + + +R L F ++ S D + L F Sbjct: 24 RYEQLTKAIFHQRIDNFEDMHILPKALRMALVNEFGKNVSSVI-PVFSQDSKQAQKLLFE 82 Query: 94 ARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + +E V + K + C+SSQ GC C FC TG+ RNLTA+EI Q+L Sbjct: 83 ---LTDGERVEAVGLKYKQGWESFCISSQCGCGFGCRFCATGSAGFKRNLTADEITDQLL 139 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN---FDNVKKSLSIASDSMG 209 D ++++I MGMGE N FD VK I +D Sbjct: 140 YF--YFND----------------HRLNSISFMGMGEAFANPELFDAVK----ILTDENL 177 Query: 210 LSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S+RRIT+ST G +P I R+ +E V LA SLH+ R+ L+PIN+++PL ++ Sbjct: 178 FGLSQRRITISTIGIIPRIQRLTKEFPQVNLAFSLHSPFESQRSDLMPINKRFPLNEVMK 237 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-----KINLIPFNPWPG 323 + + RR+ Y+ML+GINDS A ++ +LK + I+LIP+N Sbjct: 238 TLDEHI-IHTGRRVFIAYIMLEGINDSKEHAEAVVGLLKNRGSWEHLYHIDLIPYNSTDK 296 Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + I F +K++G S+ +RT G +I AACGQL Sbjct: 297 TTFKFQSSSAIKQFCNTLKKAGISATVRTQFGSEISAACGQL 338 >gi|325677606|ref|ZP_08157260.1| putative 23S rRNA m2A2503 methyltransferase [Ruminococcus albus 8] gi|324110698|gb|EGC04860.1| putative 23S rRNA m2A2503 methyltransferase [Ruminococcus albus 8] Length = 377 Score = 146 bits (368), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 90/266 (33%), Positives = 137/266 (51%), Gaps = 23/266 (8%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 IETV I ++ T+CVS+ VGC + C FC +G +RNL+ EI+ Q++L + Sbjct: 79 IETVCIKRRTGNTVCVSTMVGCPVGCIFCASGKNGFIRNLSPAEIVQQIVLLKE------ 132 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 +++ IV MGMGEPL N+DN+ KS+ I D GL+F I +ST Sbjct: 133 ---------------RVNRIVFMGMGEPLFNYDNLIKSIHILRDRNGLNFPTDGINVSTV 177 Query: 223 GFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281 G V + R+ EE + + +SLHA RN+++P + + +++A Y N R+ Sbjct: 178 GPVEQLKRLREEHLKIQFTLSLHATDQATRNMIMPHMKSNSIHSVVEAALSYSERHN-RK 236 Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341 IT Y++ GIND D L K +G INL+ +N +++ +V F + Sbjct: 237 ITIAYLLAPGINDRASDVRQLGKWFRGKNVLINLLQYNETACKRIKRPNKQQLVAFKIRL 296 Query: 342 KRSGYSSPIRTPRGLDILAACGQLKS 367 + +G +R RG I AACGQL S Sbjct: 297 EEAGLEVKLRESRGNRIKAACGQLVS 322 >gi|56962848|ref|YP_174574.1| florfenicol/chloramphenicol resistance protein [Bacillus clausii KSM-K16] gi|81366753|sp|Q5WJ42|CFR_BACSK RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr; AltName: Full=23S rRNA m8A2503 methyltransferase gi|56909086|dbj|BAD63613.1| florfenicol/chloramphenicol resistance protein [Bacillus clausii KSM-K16] Length = 350 Score = 145 bits (367), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 115/342 (33%), Positives = 171/342 (50%), Gaps = 36/342 (10%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEIVDEKISCDGTRKWLLR 91 R QI + I+ I F M+ + + +R L F SI+ E V E S T K LL+ Sbjct: 26 RYKQITEAIFKHRIGAFNKMTTLPKALRESLINEFGPSILTVEPVLETTSQQVT-KVLLK 84 Query: 92 FPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150 + G ++E V + E + C+SSQ GC L C+FC TG L +NL+A+E+ Q Sbjct: 85 -----VAGNNQVEAVRMHYEAGWESFCISSQCGCGLGCTFCSTGAIGLKQNLSADEMTDQ 139 Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210 +L G + ++ MGMGE L N + +L++ D Sbjct: 140 LLY------------------FYLKGHSLDSVSFMGMGEALANV-RIFDALNVLVDRQLF 180 Query: 211 SFSKRRITLSTSGFVPNIARVGEEIGVM-LAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 + S RRIT+ST G +PNI R+ M L SLH+ +D R+ L+PIN KYPL+ +++ Sbjct: 181 ALSPRRITVSTVGIIPNIQRMTSSFPQMNLTFSLHSPFHDQRSELMPINNKYPLDQVMNV 240 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK-ILKG-IPA--KINLIPFNPWPGC- 324 + R++ YVML+G+NDS + A L+K IL P +NLI +NP G Sbjct: 241 LDQHIH-ETGRKVYIAYVMLRGVNDSEKHAEALVKRILNNRYPHLYHVNLIRYNPTVGTP 299 Query: 325 -EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 Y + ++ + TF +K + IR+ G +I AACGQL Sbjct: 300 ENYGQTIEEKLQTFYRVVKSARIPVTIRSQFGREIDAACGQL 341 >gi|322807173|emb|CBZ04747.1| putative florfenicol resistance protein [Clostridium botulinum H04402 065] Length = 344 Score = 145 bits (367), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 111/342 (32%), Positives = 161/342 (47%), Gaps = 37/342 (10%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93 R Q+ K I+ + I +F M + + +R L F V S D + L F Sbjct: 24 RYEQLTKAIFHQRINNFDDMHILPKTLRIALVNEFGKNVSS-VTPIFSQDSKQAQKLLFE 82 Query: 94 ARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + IE V + K + C+SSQ GC C FC TG+ RNLTA+EI Q+L Sbjct: 83 ---LTDGERIEAVGLKYKQGWESFCISSQCGCGFGCRFCATGSAGFKRNLTADEITDQLL 139 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN---FDNVKKSLSIASDSMG 209 ++++I MGMGE N FD VK I +D Sbjct: 140 ------------------YFYFNNHRLNSISFMGMGEAFANPELFDAVK----ILTDQNL 177 Query: 210 LSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S+RRIT+ST G +P I R+ +E V LA SLH+ R+ L+PIN+++PL ++ Sbjct: 178 FGLSQRRITISTIGIIPGIQRLTKEFSQVNLAFSLHSPFESQRSDLMPINKRFPLNEVMK 237 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-----KINLIPFNPWPG 323 + + RR+ Y+ML+GINDS A +I +LK + I+LIP+N Sbjct: 238 TLDEHI-IHTGRRVFIAYIMLEGINDSKEHAEAVIGLLKNRGSWEHLYHIDLIPYNSTDK 296 Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + I F +K++G S+ +RT G +I AACGQL Sbjct: 297 TTFKFQSSSAIKQFCSTLKKAGISATVRTQFGSEISAACGQL 338 >gi|9294428|dbj|BAB02548.1| unnamed protein product [Arabidopsis thaliana] Length = 382 Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 116/359 (32%), Positives = 174/359 (48%), Gaps = 36/359 (10%) Query: 37 QIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLL------ 90 QIWK++ + + + LL+ F + + S DGT LL Sbjct: 28 QIWKYVIQNPDCVWDEIPSLPSAAYSLLHSKFKTLTSSLHSLFHSSDGTTSKLLIKLQNG 87 Query: 91 --------RFPARC--IGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVR 140 R+ R +GG P R TLC+SSQVGC + C+FC TGT Sbjct: 88 AFVEAVVMRYDTRLGMLGGKPR------PGGIRSTLCISSQVGCKMGCTFCATGTMGFKS 141 Query: 141 NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKS 200 NLT+ EI+ Q++ A S + D +I M++P + GMGEPL N++ V ++ Sbjct: 142 NLTSGEIVEQLVHA-SRIADI---RNIVFMLLPWF-----DDCDQGMGEPLNNYNAVVEA 192 Query: 201 LSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINR 259 + + + S +RIT+ST G V I ++ ++ GV LA+SLHA ++R ++P R Sbjct: 193 VRVMLNQ-PFQLSPKRITISTVGIVHAINKLHNDLPGVSLAVSLHAPVQEIRCQIMPAAR 251 Query: 260 KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFN 319 +PL+ L+DA + + ++ ++I EY+ML G+ND + A L ++LK INLIPFN Sbjct: 252 AFPLQKLMDALQTFQK-NSQQKIFIEYIMLDGVNDQEQHAHLLGELLKTFQVVINLIPFN 310 Query: 320 PWPGCEYLCSDQKDIVTFSECIKRSGYS--SPIRTPRGLDILAACGQLKSLSKRIPKVP 376 P + V+ + I R Y + IR G DI ACGQL I K P Sbjct: 311 PIGSTSQFETSSIQGVSRFQKILRETYKIRTTIRKEMGQDISGACGQLVVNQPDIKKTP 369 >gi|303271119|ref|XP_003054921.1| predicted protein [Micromonas pusilla CCMP1545] gi|226462895|gb|EEH60173.1| predicted protein [Micromonas pusilla CCMP1545] Length = 327 Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 105/320 (32%), Positives = 157/320 (49%), Gaps = 22/320 (6%) Query: 64 LNQHFSIIYPEIVDEKISCDG-TRKWLLRF-PARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 +N F+++ + + S DG T K ++ + V ++ + R TLCVSSQ Sbjct: 11 VNDAFALMTTTVAECHTSKDGSTTKMVVELQDGHRVEAVVMRHAIHEGGRERNTLCVSSQ 70 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK--- 178 VGC + C+FC TGT + NLT EIL Q++ A+ L + +G + R Sbjct: 71 VGCKMGCTFCATGTLGELGNLTCGEILEQLVHAQRLFRGDGDGDGGDGDGGGASRRVSGR 130 Query: 179 -----ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233 I+N+V MGMGEPL N+D V +L +D + + R+T+ST G VP + + Sbjct: 131 RRGGGITNLVFMGMGEPLNNYDAVIAALGPITDPKLFALAPSRVTVSTVGVVPRMKTLTR 190 Query: 234 EI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 + GV LA+SLHA + LR +VP R Y L L++A Y + EY +L+G+ Sbjct: 191 DAPGVALALSLHAPNQALRESIVPTARAYKLPALMEAMDKYLASGPKVKTMVEYCVLRGV 250 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNP-------WPGCEYLCSDQKDIVTFSECIKRSG 345 ND A L ++L+G +N IP+NP P + D++T E G Sbjct: 251 NDGVEHARELGELLRGRDVIVNFIPYNPTDVPMGHAPPTKEAVKAMVDVLTGPEF----G 306 Query: 346 YSSPIRTPRGLDILAACGQL 365 + +R G DI ACGQL Sbjct: 307 QFTTVRHEMGQDIAGACGQL 326 >gi|297834876|ref|XP_002885320.1| hypothetical protein ARALYDRAFT_318717 [Arabidopsis lyrata subsp. lyrata] gi|297331160|gb|EFH61579.1| hypothetical protein ARALYDRAFT_318717 [Arabidopsis lyrata subsp. lyrata] Length = 382 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 100/271 (36%), Positives = 145/271 (53%), Gaps = 14/271 (5%) Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168 P R TLC+SSQVGC + C+FC TGT NLT+ EI+ Q++ A S + D +I Sbjct: 110 PGGIRSTLCISSQVGCKMGCTFCATGTMGFKSNLTSGEIVEQLVHA-SRIADI---RNIV 165 Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228 M++P + GMGEPL N++ V +++ + S +RIT+ST G V I Sbjct: 166 FMLLPWF-----DDCDQGMGEPLNNYNAVVEAVRVML-KQPFQLSPKRITISTVGIVHAI 219 Query: 229 ARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 ++ ++ GV LA+SLHA ++R ++P R +PL+ L+DA + + S ++I EY+ Sbjct: 220 NKLDNDLPGVSLAVSLHAPVQEIRCQIMPAARAFPLQKLMDALQTFQKNSQ-QKIFIEYI 278 Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYS 347 ML G+ND + A L ++LK INLIPFNP + V+ + I R Y Sbjct: 279 MLDGVNDQEQHAHLLGELLKTFQVVINLIPFNPIGSTSQFETSSIQSVSSFQKILRETYK 338 Query: 348 --SPIRTPRGLDILAACGQLKSLSKRIPKVP 376 + IR G DI ACGQL I K P Sbjct: 339 IRTTIRKEMGQDISGACGQLVVNQPDIKKTP 369 >gi|115377656|ref|ZP_01464850.1| radical SAM domain protein [Stigmatella aurantiaca DW4/3-1] gi|310824447|ref|YP_003956805.1| ribosomal RNA large subunit methyltransferase n [Stigmatella aurantiaca DW4/3-1] gi|115365318|gb|EAU64359.1| radical SAM domain protein [Stigmatella aurantiaca DW4/3-1] gi|309397519|gb|ADO74978.1| Ribosomal RNA large subunit methyltransferase N [Stigmatella aurantiaca DW4/3-1] Length = 361 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 111/357 (31%), Positives = 164/357 (45%), Gaps = 33/357 (9%) Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQ---GMSDISQEVRHLLNQHFSIIY 72 EL EAL + VR +++ ++ G R + + + V L H + Sbjct: 10 ELGEALAPLAPTPTAVR----KVFAAVFAHGARTVEEVCAAPQVPRRVAEHLRAHGQMPR 65 Query: 73 PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSFC 131 E+V+ + + DG K+L P +GG +E V IP + +CVSSQVGC+L C FC Sbjct: 66 LEVVERRQAEDGFVKYLFGSP---LGG--RVEAVRIPIFDEKYIVCVSSQVGCALACDFC 120 Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191 TG RNL EIL QV+ R R + +V MGMGEPL Sbjct: 121 MTGKLGFQRNLKTWEILDQVMQVRE-----------------EADRPVRGVVFMGMGEPL 163 Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLAISLHAVSNDL 250 N+ ++ I S+ G + S IT ST+G VP I R E LA S+ + + Sbjct: 164 LNYAETIRAAQILSNPAGFAISGTAITFSTAGMVPAIRRYTSEGHPYRLAFSVTSAIPEK 223 Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310 R ++PI + +PL L++A R Y + R + YV + G N DA L +GIP Sbjct: 224 RLKVLPIEKGHPLPELVEAIREYTQVRRERAM-IAYVAISGFNLGREDAQALKDTFEGIP 282 Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 K++LI P +YL +++ F + ++ R G DI AACG L++ Sbjct: 283 IKVDLIDVTD-PTGKYLPPSAEELKAFRDHLQILKAPIARRYSGGKDIGAACGTLEA 338 >gi|308172367|ref|YP_003919072.1| florfenicol/chloramphenicol resistance like protein [Bacillus amyloliquefaciens DSM 7] gi|307605231|emb|CBI41602.1| florfenicol/chloramphenicol resistance like protein [Bacillus amyloliquefaciens DSM 7] gi|328552188|gb|AEB22680.1| chloramphenicol/florfenicol resistance protein [Bacillus amyloliquefaciens TA208] gi|328910459|gb|AEB62055.1| florfenicol/chloramphenicol resistance like protein [Bacillus amyloliquefaciens LL3] Length = 348 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 106/344 (30%), Positives = 174/344 (50%), Gaps = 37/344 (10%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEIVDEKISCDGTRKWLL 90 R QI I+ I F ++ + + +R +L + F S++ + E+ S + K L Sbjct: 22 FRMKQITNAIFHGRINHFNEITVLPKSLRKMLVKEFGESVLNIAALKEQHS-EQVTKVLF 80 Query: 91 RFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149 I G +IETV + K+ + C+SSQ GC C+FC TG L NLT++EI Sbjct: 81 E-----ISGDEKIETVNMKYKAGWESFCISSQCGCHFGCTFCATGDIGLKHNLTSDEITD 135 Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209 Q+L G I +I MGMGE L N V +L + ++ Sbjct: 136 QILY------------------FHLKGHSIDSISFMGMGEALAN-RQVFDALHVLTNPEL 176 Query: 210 LSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 + S RR+++ST G +P I ++ + V L SLH+ N+ R+ L+PIN +YPL ++D Sbjct: 177 FALSPRRLSISTIGIIPGIKKMTQNYPQVNLTFSLHSPFNEQRSKLMPINERYPLMEVMD 236 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-----INLIPFNPWPG 323 + ++ +R++ Y+ML G+NDS A ++K+L+G + +N+I +NP Sbjct: 237 TLDEHIRVT-SRKVYIAYIMLPGVNDSIDHANEVVKLLRGRYKRGNLFHVNIIRYNPTVS 295 Query: 324 C--EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + ++ +V F + +K +G + IR+ G+DI AACGQL Sbjct: 296 SPMRFKEVNENQVVNFYKTLKSAGINVTIRSQFGIDIDAACGQL 339 >gi|219121243|ref|XP_002185849.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|209582698|gb|ACI65319.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 290 Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 106/298 (35%), Positives = 147/298 (49%), Gaps = 31/298 (10%) Query: 81 SCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSFCYTGTQKLV 139 S D T K LLR + +E+ETV IP R TLCVSSQVGC C+FC TG + Sbjct: 5 SRDSTTKLLLR-----LSDGLEVETVIIPWTGGRSTLCVSSQVGCRQGCTFCATGRMGKL 59 Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199 R+L A+EIL Q+ AR + C +P V +N+V MGMGEP N D V + Sbjct: 60 RSLNADEILAQLFFARKI------CRQKN---LPPV----TNVVFMGMGEPADNKDAVIR 106 Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINR 259 + I + S ++T+ST P+ +LA S+HA +++LR LVP + Sbjct: 107 ATDIMTTRELFQLSASKVTVSTVAPTPDSFLQFAHAHCVLAWSVHAANDELRRQLVPTTK 166 Query: 260 KYPLEM---LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK----ILKGIPA- 311 E+ LID P N R E ++ GINDS ++A L+ I+ +P Sbjct: 167 HAMTELRQGLIDTLLIRP--HNFRTTMLEVALISGINDSEKEADELVDFAQVIIDEVPGC 224 Query: 312 --KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 +NLIPFN Y + + F + ++ G + IRT RG D AACGQL + Sbjct: 225 KLVVNLIPFNDIGQNRYTKPSMEAVSVFQKRLREFGLVAHIRTTRGDDESAACGQLAT 282 >gi|148380815|ref|YP_001255356.1| florfenicol/chloramphenicol resistance protein [Clostridium botulinum A str. ATCC 3502] gi|153933477|ref|YP_001385100.1| florfenicol/chloramphenicol resistance protein [Clostridium botulinum A str. ATCC 19397] gi|153935966|ref|YP_001388569.1| florfenicol/chloramphenicol resistance protein [Clostridium botulinum A str. Hall] gi|205829639|sp|A7FX96|CFR_CLOB1 RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr; AltName: Full=23S rRNA m8A2503 methyltransferase gi|205829640|sp|A5I5U3|CFR_CLOBH RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr; AltName: Full=23S rRNA m8A2503 methyltransferase gi|148290299|emb|CAL84423.1| putative florfenicol resistance protein [Clostridium botulinum A str. ATCC 3502] gi|152929521|gb|ABS35021.1| florfenicol/chloramphenicol resistance protein [Clostridium botulinum A str. ATCC 19397] gi|152931880|gb|ABS37379.1| florfenicol/chloramphenicol resistance protein [Clostridium botulinum A str. Hall] Length = 344 Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 110/342 (32%), Positives = 162/342 (47%), Gaps = 37/342 (10%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93 R Q+ K I+ + I +F M + + +R L F + S D + L F Sbjct: 24 RYEQLTKAIFHQRIDNFHDMHILPKALRIALVNEFGKNVSSVT-PIFSQDSKQAQKLLFE 82 Query: 94 ARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + IE V + K + C+SSQ GCS C FC TG+ RNLTA+EI Q+L Sbjct: 83 ---LTDGERIEAVGLKYKQGWESFCISSQCGCSFGCRFCATGSAGFKRNLTADEITDQLL 139 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN---FDNVKKSLSIASDSMG 209 D ++++I MGMGE N FD VK I +D Sbjct: 140 YF--YFND----------------HRLNSISFMGMGEAFANPELFDAVK----ILTDQNL 177 Query: 210 LSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S+RRIT+ST G +P I R+ +E V LA SLH+ R+ L+PIN+++PL ++ Sbjct: 178 FGLSQRRITISTIGIIPGIQRLTKEFPQVNLAFSLHSPFESQRSDLMPINKRFPLNEVMK 237 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-----KINLIPFNPWPG 323 + + RR+ Y+ML+GINDS A +I +L+ + I+LIP+N Sbjct: 238 TLDEHI-IHTGRRVFIAYIMLEGINDSKEHAEAIIGLLRNRGSWEHLYHIDLIPYNSTDK 296 Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + I F +K++ S+ +RT G +I AACGQL Sbjct: 297 TTFKFQSSSAIKQFCSTLKKASISATVRTQFGSEISAACGQL 338 >gi|320104471|ref|YP_004180062.1| Radical SAM domain-containing protein [Isosphaera pallida ATCC 43644] gi|319751753|gb|ADV63513.1| Radical SAM domain protein [Isosphaera pallida ATCC 43644] Length = 373 Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 98/272 (36%), Positives = 136/272 (50%), Gaps = 21/272 (7%) Query: 103 IETVYIP--EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160 +ETV IP +++ +LCVSSQ GC + C+FC T RNL A EI+ Q+L AR+ Sbjct: 109 VETVLIPLHKENAVSLCVSSQSGCPMACAFCATARLSRRRNLAAWEIVDQILQARAR--- 165 Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLS 220 + GR+++ V MGMGEP N+D V + I +GL+ + + IT+S Sbjct: 166 -----------VELQGRRVTGCVFMGMGEPFLNYDRVMTAAEILRSPIGLAVNAKAITIS 214 Query: 221 TSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279 T G V I R E+ L+ISL A + R LVP+ + PL LI A R + Sbjct: 215 TVGLVAEIDRFTREQRPYRLSISLGAADDATRAQLVPVAARTPLRELIAAARRHQHQRGG 274 Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSE 339 RI YV + +N S DA NL ++L+G+P + NLI P + TF + Sbjct: 275 -RINLSYVCIANLNTSETDARNLGRLLEGLPVRFNLIDVTD-PTGRFHPPSPAQWNTFRD 332 Query: 340 CIKRSGYSSPI--RTPRGLDILAACGQLKSLS 369 ++R PI R G DI AACG L S Sbjct: 333 ALRRHLPGQPIVRRYSGGADIQAACGTLAGTS 364 >gi|308798845|ref|XP_003074202.1| radical SAM domain-containing protein-like (ISS) [Ostreococcus tauri] gi|116000374|emb|CAL50054.1| radical SAM domain-containing protein-like (ISS) [Ostreococcus tauri] Length = 406 Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 104/371 (28%), Positives = 175/371 (47%), Gaps = 66/371 (17%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRG---IRDFQGMSDISQEVR-HL 63 SL+G+ + ELE ++ G+P + R Q+ +Y R + +S+ +R L Sbjct: 88 SLLGLTKRELEALAVERGMP----KFRGKQMADHLYAANGTSARSVDEFTTLSKALRAEL 143 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + + + + DGT K LLR + VE Sbjct: 144 VAAGVRVGRSSVHHVAAATDGTAKLLLRLDDDRV---VE--------------------- 179 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 T RNL EI+ QVL +L F G++++N+V Sbjct: 180 -----------TGGFARNLAPHEIVDQVL---ALEEHF--------------GQRVTNVV 211 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242 MGMGEPL N NV K+ + + +G+ R IT+ST G +I ++ ++ +LA+S Sbjct: 212 FMGMGEPLLNVPNVLKAHEVLNKEIGIG--ARHITISTVGVRGSIEKLAYAQLQSVLAVS 269 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA + +LR ++P + YP+E L+ C Y ++ RR+TFEY +L G+ND P A L Sbjct: 270 LHAPNQELRETIIPSAKVYPMEDLLQDCEQY-FIATGRRVTFEYTLLGGVNDQPEHAKEL 328 Query: 303 IKIL--KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 ++L + + + +NLIP+NP ++ + + F + +++ + IR RGL+ A Sbjct: 329 GRLLYARNLASHVNLIPYNPVDDADFKRPSRATVYAFRDVLEQERVPASIRQTRGLEAAA 388 Query: 361 ACGQLKSLSKR 371 ACGQL++ ++ Sbjct: 389 ACGQLRNAYQK 399 >gi|323452575|gb|EGB08449.1| hypothetical protein AURANDRAFT_64082 [Aureococcus anophagefferens] Length = 399 Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 117/358 (32%), Positives = 169/358 (47%), Gaps = 39/358 (10%) Query: 34 RTSQIWKWIYVRGIRD---FQGMSDISQEVRHLLNQHF-SIIYPEIVDEKISCDGTRKWL 89 RT +WK +R RD + ++S+ R L + S D + + DGT K L Sbjct: 58 RTRSVWK--ALREGRDPCVQEETPELSRWTRETLTAAYGSGADARCADARTAEDGTTKLL 115 Query: 90 LRFPARCIGGPVEIETVYIPEKSRG----TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAE 145 + F G +E V IP+ +RG TLCVSSQVGC++ C+FC TG L+R+LT + Sbjct: 116 VEF-----GDRDAVEAVLIPQLTRGKATSTLCVSSQVGCAMGCAFCATGKMGLIRSLTDD 170 Query: 146 EILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS 205 EI Q+ LA P +P + +IV MGMG+ N + K + + Sbjct: 171 EIAAQLWLALRAARSVPD--------LP----PLRSIVFMGMGDAGTNPKHAKAAAECFT 218 Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEM 265 D FS+ R+TLST G P+ LA S+HAV DLR LVP P + Sbjct: 219 DPDRFGFSRHRLTLSTVGPSPSAFLALAAAPGQLAWSVHAVDADLRKRLVPTAAWEPEAL 278 Query: 266 ---LIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-----INLI 316 L+DA R P S R + +L G+NDS A L + ++ + A+ ++LI Sbjct: 279 RDGLLDALRATRPMHSKERSVMLAVTLLAGVNDSLEHARALAEFVQPVRAETPRLIVDLI 338 Query: 317 PFNPWPGCEYLCSDQKDIVT-FSECIKRS--GYSSPIRTPRGLDILAACGQLKSLSKR 371 P+NP + D V+ F +K G +R RG D AACGQL + +++ Sbjct: 339 PYNPIDAADAFQRPSFDAVSAFQRELKAHAPGLFIGVRNARGDDEAAACGQLATNAQK 396 >gi|329930082|ref|ZP_08283701.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF5] gi|328935341|gb|EGG31816.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF5] Length = 346 Score = 142 bits (358), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 110/346 (31%), Positives = 171/346 (49%), Gaps = 43/346 (12%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-----NQHFSIIYPEIVDEKISCDGTRKW 88 R SQI + I+ I +F+ M+++ + +R+ L N SI P++ + + K Sbjct: 23 RYSQITESIFKNKIGNFEAMNNLPKPLRNELIKELGNNVLSIT-PKMEQK---SNQVSKI 78 Query: 89 LLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147 L P G IE+V + ++ + C+SSQ GC C+FC TGT L RNLT +EI Sbjct: 79 LFAVP-----GDEYIESVRLSYQTGWESYCISSQCGCGFGCTFCATGTLGLKRNLTTDEI 133 Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207 Q+L L + P + ++ MGMGE L N V +L + +D Sbjct: 134 TDQLLYFT--LNNHP----------------LDSVSFMGMGEALAN-PYVFDALHVLTDP 174 Query: 208 MGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEML 266 RRIT+ST G +P + ++ +E + L SLH+ +D R+ L+PIN +PLE + Sbjct: 175 KLFGLGHRRITVSTIGLIPGVKKLTKEFPQINLTFSLHSPFHDQRSELMPINNHFPLEEV 234 Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP-----AKINLIPFNPW 321 + + + R++ Y++L+GINDS + A + +L+G +NLIP+N Sbjct: 235 MTVLDEHIQQT-KRKVYIAYILLRGINDSTKHAEAVADLLRGRGPWEHLYHVNLIPYNST 293 Query: 322 PGC--EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 ++ SDQ I F +K G +RT G DI AACGQL Sbjct: 294 DATSQSFVESDQNSINMFLRILKSKGIHVTVRTQFGSDINAACGQL 339 >gi|205829719|sp|A1K1N5|Y122_AZOSB RecName: Full=Probable RNA methyltransferase azo0122 Length = 347 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 83/266 (31%), Positives = 139/266 (52%), Gaps = 23/266 (8%) Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172 R LCVS+Q+GC++ C FC TG + L+R L + EI+ QV+LARSL Sbjct: 95 RDGLCVSTQLGCAVGCVFCMTGREGLLRQLGSAEIVAQVVLARSL--------------- 139 Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV- 231 R + +V MGMGEP N DNV +++ + + G+ + + ST G R+ Sbjct: 140 ----RPVKKVVFMGMGEPAHNLDNVLEAIDLLGTAGGIGH--KNLVFSTVGDYRVFERLP 193 Query: 232 GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291 + + LA+SLH DLR L+P + + L++ Y S I +++ +++G Sbjct: 194 RQRVKPALALSLHTTRADLRAQLLPRAPQIAPQELVELGERY-ARSTGYPIQYQWTLIEG 252 Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351 +NDSP + ++++L+G A +NLIP+N P E+ ++ V + + R G + +R Sbjct: 253 VNDSPEEMDGIVRLLRGKYALMNLIPYNSVPELEFRRPGREAAVALAAYLHRHGVLAKLR 312 Query: 352 TPRGLDILAACGQLKSLSKRIPKVPR 377 G D+ CGQL++ ++ + PR Sbjct: 313 QSAGQDVEGGCGQLRARVVKMDRRPR 338 >gi|119896414|ref|YP_931627.1| ribosomal RNA large subunit methyltransferase N [Azoarcus sp. BH72] gi|119668827|emb|CAL92740.1| probable Fe-S cluster redox enzyme [Azoarcus sp. BH72] Length = 390 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 83/266 (31%), Positives = 139/266 (52%), Gaps = 23/266 (8%) Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172 R LCVS+Q+GC++ C FC TG + L+R L + EI+ QV+LARSL Sbjct: 138 RDGLCVSTQLGCAVGCVFCMTGREGLLRQLGSAEIVAQVVLARSL--------------- 182 Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232 R + +V MGMGEP N DNV +++ + + G+ + + ST G R+ Sbjct: 183 ----RPVKKVVFMGMGEPAHNLDNVLEAIDLLGTAGGIGH--KNLVFSTVGDYRVFERLP 236 Query: 233 EE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291 + + LA+SLH DLR L+P + + L++ Y S I +++ +++G Sbjct: 237 RQRVKPALALSLHTTRADLRAQLLPRAPQIAPQELVELGERY-ARSTGYPIQYQWTLIEG 295 Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351 +NDSP + ++++L+G A +NLIP+N P E+ ++ V + + R G + +R Sbjct: 296 VNDSPEEMDGIVRLLRGKYALMNLIPYNSVPELEFRRPGREAAVALAAYLHRHGVLAKLR 355 Query: 352 TPRGLDILAACGQLKSLSKRIPKVPR 377 G D+ CGQL++ ++ + PR Sbjct: 356 QSAGQDVEGGCGQLRARVVKMDRRPR 381 >gi|170758262|ref|YP_001788180.1| florfenicol/chloramphenicol resistance protein [Clostridium botulinum A3 str. Loch Maree] gi|205829643|sp|B1KZ37|CFR_CLOBM RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr; AltName: Full=23S rRNA m8A2503 methyltransferase gi|169405251|gb|ACA53662.1| florfenicol/chloramphenicol resistance protein [Clostridium botulinum A3 str. Loch Maree] Length = 344 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 90/260 (34%), Positives = 132/260 (50%), Gaps = 32/260 (12%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 + C+SSQ GC C FC TG+ RNLTA+EI Q+L Sbjct: 102 SFCISSQCGCGFGCRFCATGSAGFKRNLTADEITDQLL------------------YFYF 143 Query: 175 VGRKISNIVMMGMGEPLCN---FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231 ++++I MGMGE N FD VK I +D S+RRIT+ST G +P I R+ Sbjct: 144 NNHRLNSISFMGMGEAFANPELFDAVK----ILTDQNLFGLSQRRITISTIGIIPGIQRL 199 Query: 232 GEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 ++ V LA SLH+ R+ L+PIN+++PL ++ + + RR+ Y+ML+ Sbjct: 200 TKKFPQVNLAFSLHSPFESQRSDLMPINKRFPLNEVMKTLDEHI-IHTGRRVFIAYIMLE 258 Query: 291 GINDSPRDALNLIKILKGIPA-----KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSG 345 GINDS A ++ +LK + I+LIP+N + I F +K++G Sbjct: 259 GINDSKEHAEAVVGLLKNRGSWEHLYHIDLIPYNSTDKTTFKFQSSSAIKQFCSTLKKAG 318 Query: 346 YSSPIRTPRGLDILAACGQL 365 S+ +RT G +I AACGQL Sbjct: 319 ISATVRTQFGSEISAACGQL 338 >gi|153939955|ref|YP_001392137.1| florfenicol/chloramphenicol resistance protein [Clostridium botulinum F str. Langeland] gi|205829642|sp|A7GH77|CFR_CLOBL RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr; AltName: Full=23S rRNA m8A2503 methyltransferase gi|152935851|gb|ABS41349.1| florfenicol/chloramphenicol resistance protein [Clostridium botulinum F str. Langeland] gi|295320142|gb|ADG00520.1| florfenicol/chloramphenicol resistance protein [Clostridium botulinum F str. 230613] Length = 344 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 108/342 (31%), Positives = 162/342 (47%), Gaps = 37/342 (10%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93 R Q+ K I+ + I +F M + + +R L F ++ S D + L F Sbjct: 24 RYEQLTKAIFHQRIDNFDDMHILPKVLRMSLVNEFGKNVSSVI-PVFSQDSKQAQKLLFE 82 Query: 94 ARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + IE V + K + C+SSQ GC C FC TG+ RNLTA+EI Q+L Sbjct: 83 ---LTDGERIEAVGLKYKQGWESFCISSQCGCGFGCRFCATGSAGFKRNLTADEITDQLL 139 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN---FDNVKKSLSIASDSMG 209 D ++++I MGMGE N FD VK I +D Sbjct: 140 YF--YFND----------------HRLNSISFMGMGEAFANPELFDAVK----ILTDQNL 177 Query: 210 LSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S+RRIT+ST G +P I + ++ V LA SLH+ R+ L+PIN+++PL ++ Sbjct: 178 FGLSQRRITISTIGIIPGIQSLTQKFPQVNLAFSLHSPFESQRSDLMPINKRFPLNQVMK 237 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-----KINLIPFNPWPG 323 + + RR+ Y+ML+GINDS A ++ +LK + I+LIP+N Sbjct: 238 TLDEHI-IHTGRRVFIAYIMLEGINDSKEHAEAVVGLLKNRGSWEHLYHIDLIPYNSTDK 296 Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + I F +K++G S+ +RT G +I AACGQL Sbjct: 297 TTFKFQSSNAIKQFCSTLKKAGISATVRTQFGSEISAACGQL 338 >gi|219129697|ref|XP_002185019.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217403514|gb|EEC43466.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 387 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 97/262 (37%), Positives = 134/262 (51%), Gaps = 24/262 (9%) Query: 111 KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 SR +LCVSSQ GC++ C+FC TGT L NLTA EIL Q+ L + L Sbjct: 125 NSRASLCVSSQCGCAMGCTFCATGTMGLSGNLTAGEILEQIPLPKLDL------------ 172 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230 + N+V MGMGEPL N+ NV ++ D + + R+T+ST G V I + Sbjct: 173 --------VRNVVFMGMGEPLDNYSNVVEACRALIDRQRWNLAHGRVTVSTVGLVSQIRK 224 Query: 231 VGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT--FEYV 287 + E+ V LA+SLHA + R +VP + YPLE LIDA + +R EYV Sbjct: 225 LTAELPEVSLALSLHAPNQQDRQAIVPTAKHYPLEDLIDALDQHMMAYLQKRTNPMIEYV 284 Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL-CSDQKDIVTFSECIKRSGY 346 ML+G + A L K+ + +NLIP+N + L C ++ + F E + G Sbjct: 285 MLEGPTSTLECAHQLGKLCENRHLVVNLIPYNQTNVRDVLRCPSREHMEEFREIVASYGS 344 Query: 347 SSPIRTPRGLDILAACGQLKSL 368 IR G DI +ACGQL +L Sbjct: 345 FCTIRKTMGADIDSACGQLITL 366 >gi|170754770|ref|YP_001782469.1| florfenicol/chloramphenicol resistance protein [Clostridium botulinum B1 str. Okra] gi|205829627|sp|B1IL14|CFR_CLOBK RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr; AltName: Full=23S rRNA m8A2503 methyltransferase gi|169119982|gb|ACA43818.1| florfenicol/chloramphenicol resistance protein [Clostridium botulinum B1 str. Okra] Length = 344 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 90/260 (34%), Positives = 132/260 (50%), Gaps = 32/260 (12%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 + C+SSQ GC C FC TG+ RNLTA+EI Q+L Sbjct: 102 SFCISSQCGCGFGCRFCATGSAGFKRNLTADEITDQLL------------------YFYF 143 Query: 175 VGRKISNIVMMGMGEPLCN---FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231 ++++I MGMGE N FD VK I +D S+RRIT+ST G +P I R+ Sbjct: 144 NNHRLNSISFMGMGEAFANPELFDAVK----ILTDQNLFGLSQRRITISTIGIIPGIQRL 199 Query: 232 GEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 ++ V LA SLH+ R+ L+PIN+++PL ++ + + RR+ Y+ML+ Sbjct: 200 TKKFPQVNLAFSLHSPFESRRSDLMPINKRFPLNEVMKTLDEHI-IHTGRRVFIAYIMLE 258 Query: 291 GINDSPRDALNLIKILKGIPA-----KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSG 345 GINDS A ++ +LK + I+LIP+N + I F +K++G Sbjct: 259 GINDSKEHAEAVVGLLKNRGSWEHLYHIDLIPYNSTDKTTFKFQSSSAIKQFCSTLKKAG 318 Query: 346 YSSPIRTPRGLDILAACGQL 365 S+ +RT G +I AACGQL Sbjct: 319 ISATVRTQFGSEISAACGQL 338 >gi|323453410|gb|EGB09282.1| hypothetical protein AURANDRAFT_12147 [Aureococcus anophagefferens] Length = 316 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 111/334 (33%), Positives = 160/334 (47%), Gaps = 51/334 (15%) Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE----KSRGTL 116 + + +FS ++V S DG+ L+ RC ++ETV + SR T+ Sbjct: 4 KEAVAANFSARSVDLVSRHDSSDGSTSKLV-VGLRC---GKKVETVVMRHGTLRSSRVTV 59 Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176 CVSSQVGC++ CSFC TGT + +LT EI+ QVLLA+ + G Sbjct: 60 CVSSQVGCAMRCSFCATGTMGMQGDLTRGEIVEQVLLAKGVDG----------------- 102 Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEI 235 ++ N+V MGMGEPL N+D V + D L+ R+T+ST G V I + +E Sbjct: 103 -RLRNVVFMGMGEPLNNYDEVLGACRCLLDDRWLALGGGRVTISTVGVVDRIRSLAADEP 161 Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL---------SNARR----- 281 LA+SLHA + D R ++P ++Y L+ L+DA Y S RR Sbjct: 162 RANLALSLHAPTQDQRVAIMPAAKRYDLDDLLDALDAYVAEKLRELERRGSRKRRNDEKQ 221 Query: 282 --ITFEYVMLKGINDSPRDALNLIKILK--------GIPAKINLIPFNPWPGCEYLCSDQ 331 I EY++L G+NDS DA L K+ G A +NLI +NP P Y Sbjct: 222 PLIMVEYILLGGVNDSVADADALGKLFSRAGAAPRFGGRAMVNLIAYNPTPDLPYDRPSD 281 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + F + ++ G + +R G D+ ACGQL Sbjct: 282 AAVAAFQKAVQAHGVLTCVRITMGSDVAGACGQL 315 >gi|226323828|ref|ZP_03799346.1| hypothetical protein COPCOM_01603 [Coprococcus comes ATCC 27758] gi|225208012|gb|EEG90366.1| hypothetical protein COPCOM_01603 [Coprococcus comes ATCC 27758] Length = 176 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 74/166 (44%), Positives = 103/166 (62%), Gaps = 2/166 (1%) Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234 G ++SNIV+MG GEPL N+DN K + + SD GL+ S+R IT ST G VPNI R+ EE Sbjct: 12 TGERVSNIVIMGTGEPLDNYDNFLKFIHMVSDEHGLNISQRNITASTCGIVPNIRRLAEE 71 Query: 235 -IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 + + LA+SLH + + R L+P+ KY L +++AC +Y + RRITFEY ++ G+N Sbjct: 72 KLQITLALSLHGSNQEKRRSLMPVANKYELHEVLEACDYYFEKT-GRRITFEYSLVHGVN 130 Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSE 339 D+P DA L+ ILK +NLIP NP Y D+K F + Sbjct: 131 DTPEDAKELMGILKDRNCHLNLIPVNPIKERNYEKPDKKKCREFQK 176 >gi|261407206|ref|YP_003243447.1| chloramphenicol/florfenicol resistance protein [Paenibacillus sp. Y412MC10] gi|261283669|gb|ACX65640.1| radical SAM enzyme, Cfr family [Paenibacillus sp. Y412MC10] Length = 346 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 49/349 (14%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-----NQHFSIIYPEIVDEKISCDGTRKW 88 R SQI + I+ I +F+ M+++ + VR+ L N SI P++ + + K Sbjct: 23 RYSQITEAIFKNKIGNFEAMNNLPKPVRNELIKELGNNVLSIT-PKMEQK---SNQVSKI 78 Query: 89 LLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147 L P G IE+V + ++ + C+SSQ GC C+FC TGT L RNLT +EI Sbjct: 79 LFAIP-----GDEYIESVRLSYQTGWESYCISSQCGCGFGCTFCATGTLGLKRNLTTDEI 133 Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN---FDNVKKSLSIA 204 Q+L L + P + ++ MGMGE L N FD +L + Sbjct: 134 TDQLLYFT--LNNHP----------------LDSVSFMGMGEALANPYVFD----ALHLL 171 Query: 205 SDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPL 263 +D RRIT+ST G +P + ++ +E + L SLH+ +D R+ L+PIN +PL Sbjct: 172 TDPKLFGLGHRRITVSTIGLLPGVKKLTKEFPQINLTFSLHSPFHDQRSELMPINNHFPL 231 Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-----KINLIPF 318 E ++ + + R++ Y++L+GINDS + A + +L+ + +NLIP+ Sbjct: 232 EEVMTVLDEHIQQT-KRKVYIAYILLRGINDSTKHAKAVADLLRERGSWEHLYHVNLIPY 290 Query: 319 NPWPGC--EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 N ++ SDQ I F +K G +RT G DI AACGQL Sbjct: 291 NSTDATSQSFVESDQNSINMFLRILKSKGIHVTVRTQFGSDINAACGQL 339 >gi|219113956|ref|XP_002176161.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217402902|gb|EEC42868.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 471 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 97/262 (37%), Positives = 134/262 (51%), Gaps = 24/262 (9%) Query: 111 KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 SR +LCVSSQ GC++ C+FC TGT L NLTA EIL Q+ L + L Sbjct: 125 NSRASLCVSSQCGCAMGCTFCATGTMGLSGNLTAGEILEQIPLPKLDL------------ 172 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230 + N+V MGMGEPL N+ NV ++ D + + R+T+ST G V I + Sbjct: 173 --------VRNVVFMGMGEPLDNYSNVVEACRALIDRQRWNLAHGRVTVSTVGLVSQIRK 224 Query: 231 VGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT--FEYV 287 + E+ V LA+SLHA + R +VP + YPLE LIDA + +R EYV Sbjct: 225 LTAELPEVSLALSLHAPNQQDRQAIVPTAKHYPLEDLIDALDQHMMAYLQKRTNPMIEYV 284 Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL-CSDQKDIVTFSECIKRSGY 346 ML+G + A L K+ + +NLIP+N + L C ++ + F E + G Sbjct: 285 MLEGPTSTLECAHQLGKLCENRHLVVNLIPYNQTNVRDVLRCPSREHMEEFREIVVSYGS 344 Query: 347 SSPIRTPRGLDILAACGQLKSL 368 IR G DI +ACGQL +L Sbjct: 345 FCTIRKTMGADIDSACGQLITL 366 >gi|301793926|emb|CBW36322.1| SAM-dependent methyltransferase [Streptococcus pneumoniae INV104] Length = 243 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 82/244 (33%), Positives = 139/244 (56%), Gaps = 22/244 (9%) Query: 26 IPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI--IYPEIVDEKISCD 83 + Q + R QIW+W+Y + ++ F+ M+++S+++ LN F + + IV E S D Sbjct: 6 LEQGEKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLKQGIVQE--SAD 63 Query: 84 GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLT 143 GT K+L P + IETV + + ++CV++QVGC++ C+FC +G K R+L Sbjct: 64 GTVKYLFELPDGML-----IETVLMCQHYGLSVCVTTQVGCNIGCTFCASGLIKKQRDLN 118 Query: 144 AEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI 203 EI+ Q++L + D G ++ +IS+IV+MG+GEP N++NV Sbjct: 119 NGEIVAQIMLVQKYF-DERGQDE-----------RISHIVVMGIGEPFDNYNNVLNFFRT 166 Query: 204 ASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYP 262 +D G++ R IT+S SG I +E + V LA+SLHA +N+LR+ ++ INR +P Sbjct: 167 INDDKGMAIGARHITVSISGLAHKIRDFADEGVQVNLAVSLHAPNNELRSSIMKINRAFP 226 Query: 263 LEML 266 + ++ Sbjct: 227 IRLV 230 >gi|168179276|ref|ZP_02613940.1| florfenicol/chloramphenicol resistance protein [Clostridium botulinum NCTC 2916] gi|182669853|gb|EDT81829.1| florfenicol/chloramphenicol resistance protein [Clostridium botulinum NCTC 2916] Length = 344 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 108/342 (31%), Positives = 162/342 (47%), Gaps = 37/342 (10%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93 R Q+ K I+ + I +F M + + +R L F ++ S D + L F Sbjct: 24 RYEQLIKAIFHQRIDNFDDMHILPKALRMSLVNEFGKNVSSVI-PVFSQDSKQAQKLLFE 82 Query: 94 ARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + IE V + K + C+S Q GC C FC TG+ RNLTA+EI Q+L Sbjct: 83 ---LTDGERIEAVGLKYKQGWESFCISCQCGCGFGCRFCATGSVGFKRNLTADEITDQLL 139 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN---FDNVKKSLSIASDSMG 209 D ++++I MGMGE N FD VK I +D Sbjct: 140 YF--YFND----------------HRLNSISFMGMGEAFANPELFDAVK----ILTDQNL 177 Query: 210 LSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S+RRIT+ST G +P I R+ ++ V LA SLH+ R+ L+PIN+++PL ++ Sbjct: 178 FGLSQRRITISTIGIIPGIQRLTQKFPQVNLAFSLHSPFESQRSDLMPINKRFPLNEVMK 237 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-----KINLIPFNPWPG 323 + + RR+ Y+ML+GINDS A ++ +LK + I+LIP+N Sbjct: 238 TLDEHI-IHTGRRVFIAYIMLEGINDSKEHAEAVVGLLKNRGSWEHLYHIDLIPYNSTDK 296 Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + I F +K++G S+ +RT G +I AACGQL Sbjct: 297 TTFKFQSSSAIKQFCSTLKKAGISATVRTQFGSEISAACGQL 338 >gi|168184510|ref|ZP_02619174.1| florfenicol/chloramphenicol resistance protein [Clostridium botulinum Bf] gi|237796302|ref|YP_002863854.1| chloramphenicol/florfenicol resistance protein [Clostridium botulinum Ba4 str. 657] gi|182672475|gb|EDT84436.1| florfenicol/chloramphenicol resistance protein [Clostridium botulinum Bf] gi|229261117|gb|ACQ52150.1| florfenicol/chloramphenicol resistance protein [Clostridium botulinum Ba4 str. 657] Length = 344 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 91/260 (35%), Positives = 133/260 (51%), Gaps = 32/260 (12%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 + C+S Q GCS C FC TG+ RNLTA+EI Q+L D Sbjct: 102 SFCISCQCGCSFGCRFCATGSVGFKRNLTADEITDQLLYF--YFND-------------- 145 Query: 175 VGRKISNIVMMGMGEPLCN---FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231 ++++I MGMGE N FD VK I +D S+RRIT+ST G +P I R+ Sbjct: 146 --HRLNSISFMGMGEAFANPELFDAVK----ILTDQNLFGLSQRRITISTIGIIPGIQRL 199 Query: 232 GEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 ++ V LA SLH+ R+ L+PIN+++PL ++ + + RR+ Y+ML+ Sbjct: 200 TQKFPQVNLAFSLHSPFESQRSDLMPINKRFPLNEVMKTLDEHI-IHTGRRVFIAYIMLE 258 Query: 291 GINDSPRDALNLIKILKGIPA-----KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSG 345 GINDS A ++ +LK + I+LIP+N + I F +K++G Sbjct: 259 GINDSKEHAEAVVGLLKNRGSWEHLYHIDLIPYNSTDKTTFKFQSSSAIKQFCSTLKKAG 318 Query: 346 YSSPIRTPRGLDILAACGQL 365 S+ +RT G +I AACGQL Sbjct: 319 ISATVRTQFGSEISAACGQL 338 >gi|226950274|ref|YP_002805365.1| florfenicol/chloramphenicol resistance protein [Clostridium botulinum A2 str. Kyoto] gi|226842506|gb|ACO85172.1| florfenicol/chloramphenicol resistance protein [Clostridium botulinum A2 str. Kyoto] Length = 344 Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 108/342 (31%), Positives = 162/342 (47%), Gaps = 37/342 (10%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93 R Q+ K I+ + I +F M + + +R L F ++ S D + L F Sbjct: 24 RYEQLIKAIFHQRIDNFDDMHILPKALRMSLVNEFRKNVSSVI-PVFSQDSKQAQKLLFE 82 Query: 94 ARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + IE V + K + C+S Q GC C FC TG+ RNLTA+EI Q+L Sbjct: 83 ---LTDGERIEAVGLKYKQGWESFCISCQCGCGFGCRFCATGSVGFKRNLTADEITDQLL 139 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN---FDNVKKSLSIASDSMG 209 D ++++I MGMGE N FD VK I +D Sbjct: 140 YF--YFND----------------HRLNSISFMGMGEAFANPELFDAVK----ILTDQNL 177 Query: 210 LSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S+RRIT+ST G +P I R+ ++ V LA SLH+ R+ L+PIN+++PL ++ Sbjct: 178 FGLSQRRITISTIGIIPGIQRLTQKFPQVNLAFSLHSPFESQRSDLMPINKRFPLNEVMK 237 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-----KINLIPFNPWPG 323 + + RR+ Y+ML+GINDS A ++ +LK + I+LIP+N Sbjct: 238 TLDEHI-IHTGRRVFIAYIMLEGINDSKEHAEAVVGLLKNRGSWEHLYHIDLIPYNSTDK 296 Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + I F +K++G S+ +RT G +I AACGQL Sbjct: 297 TTFKFQSSSAIKQFCSTLKKAGISATVRTQFGSEISAACGQL 338 >gi|167951357|ref|ZP_02538431.1| radical SAM enzyme, Cfr family protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 220 Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 87/239 (36%), Positives = 127/239 (53%), Gaps = 29/239 (12%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + + +L+ + + +E +++G H R ++KWI+ +G+ DF M+DIS+ +R Sbjct: 1 MNETNLMELDQRSMERCFVELGSKAFHGR----NVFKWIHKQGVIDFNQMTDISKRLRVQ 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L I PE+V E+ + DGTRKW+L+ + IETVYIP+ R T+CVSSQVG Sbjct: 57 LESLAEIRLPELVFEQPARDGTRKWVLQ-----LDDGQRIETVYIPDGERSTICVSSQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG--RKISN 181 C+L CSFC TG+ G + G+ P+V +N Sbjct: 112 CALNCSFCSTGSPGFQPQ------------------SLGGGDYRPGLGWPAVNWWHPPTN 153 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 IV+MGMGEPL NFD V ++ I D SK R+T+STSG VP + ++ E V LA Sbjct: 154 IVLMGMGEPLANFDAVVTAMDIMQDDSAYMLSKYRVTISTSGIVPALRQLREVSDVSLA 212 >gi|289754992|ref|ZP_06514370.1| LOW QUALITY PROTEIN: 23S rRNA methyltransferase [Mycobacterium tuberculosis EAS054] gi|289695579|gb|EFD63008.1| LOW QUALITY PROTEIN: 23S rRNA methyltransferase [Mycobacterium tuberculosis EAS054] Length = 275 Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 91/269 (33%), Positives = 137/269 (50%), Gaps = 32/269 (11%) Query: 19 EALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV-- 76 A+ ++G+P R Q+ Y R I D + M+D+ VR ++ ++P ++ Sbjct: 29 SAVAELGLPA----FRAKQLAHQYYGRLIADPRQMTDLPAAVR---DRIAGAMFPNLLTA 81 Query: 77 DEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134 I+CD TRK L R + G + E+V + R T+C+SSQ GC + C FC TG Sbjct: 82 SADITCDAGQTRKTLWR----AVDGTM-FESVLMRYSRRNTVCISSQAGCGMACPFCATG 136 Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194 L RNL+ EIL QV + L D G ++SN+V MGMGEPL N+ Sbjct: 137 QGGLTRNLSTAEILEQVRAGAAALRD-------------DFGDRLSNVVFMGMGEPLANY 183 Query: 195 DNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLR 251 V ++ A G S R +T+ST G P I + + +GV LA+SLHA + LR Sbjct: 184 ARVLAAVQRITARPPSGFGISARAVTVSTVGLAPAIRNLADARLGVTLALSLHAPDDGLR 243 Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNAR 280 + LVP+N ++ + +DA R+Y ++ R Sbjct: 244 DTLVPVNNRWRISEALDAARYYANVTGRR 272 >gi|71608924|emb|CAI56203.1| methyltransferase [Staphylococcus aureus] gi|76057931|emb|CAJ30491.1| 23S rRNA methylase [Staphylococcus aureus] Length = 349 Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 106/343 (30%), Positives = 176/343 (51%), Gaps = 37/343 (10%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEIVDEKISCDGTRKWLLR 91 R QI I+ + I F+ M + + +R L +F +++ +++ E+ S + K L Sbjct: 25 RIKQITNAIFKQRISRFEDMKVLPKLLREDLINNFGETVLNIKLLAEQNS-EQVTKVLFE 83 Query: 92 FPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150 + +ETV + K+ + C+SSQ GC+ C FC TG L +NLT +EI Q Sbjct: 84 -----VSKNERVETVNMKYKAGWESFCISSQCGCNFGCKFCATGDIGLKKNLTVDEITDQ 138 Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210 VL L G +I +I MGMGE L N V +L +D Sbjct: 139 VLYFHLL------------------GHQIDSISFMGMGEALAN-RQVFDALDSFTDPNLF 179 Query: 211 SFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 + S RR+++ST G +P+I ++ +E V L SLH+ ++ R+ L+PIN +YP++ +++ Sbjct: 180 ALSPRRLSISTIGIIPSIKKITQEYPQVNLTFSLHSPYSEERSKLMPINDRYPIDEVMNI 239 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK-----GIPAKINLIPFNPWPGC 324 + L+ +R++ +Y+ML G+NDS A ++ +LK G +NLI +NP Sbjct: 240 LDEHIRLT-SRKVYIDYIMLPGVNDSLEHANEVVSLLKSRYKSGKLYHVNLIRYNPTISA 298 Query: 325 E--YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 Y +++ + F + +K +G IR+ G+DI AACGQL Sbjct: 299 PEMYGEANEGQVEAFYKVLKSAGIHVTIRSQFGIDIDAACGQL 341 >gi|289759001|ref|ZP_06518379.1| LOW QUALITY PROTEIN: 23S rRNA methyltransferase [Mycobacterium tuberculosis T85] gi|289714565|gb|EFD78577.1| LOW QUALITY PROTEIN: 23S rRNA methyltransferase [Mycobacterium tuberculosis T85] Length = 275 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 91/269 (33%), Positives = 137/269 (50%), Gaps = 32/269 (11%) Query: 19 EALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV-- 76 A+ ++G+P R Q+ Y R I D + M+D+ VR ++ ++P ++ Sbjct: 29 SAVAELGLPA----FRAKQLAHQYYGRLIADPRQMTDLPAAVR---DRIAGAMFPNLLTA 81 Query: 77 DEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134 I+CD TRK L R + G + E+V + R T+C+SSQ GC + C FC TG Sbjct: 82 SADITCDAGQTRKTLWR----AVDGTM-FESVLMRYPRRNTVCISSQAGCGMACPFCATG 136 Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194 L RNL+ EIL QV + L D G ++SN+V MGMGEPL N+ Sbjct: 137 QGGLTRNLSTAEILEQVRAGAAALRD-------------DFGDRLSNVVFMGMGEPLANY 183 Query: 195 DNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLR 251 V ++ A G S R +T+ST G P I + + +GV LA+SLHA + LR Sbjct: 184 ARVLAAVQRITARPPSGFGISARAVTVSTVGLAPAIRNLADARLGVTLALSLHAPDDGLR 243 Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNAR 280 + LVP+N ++ + +DA R+Y ++ R Sbjct: 244 DTLVPVNNRWRISEALDAARYYANVTGRR 272 >gi|307352151|ref|YP_003896025.1| chloramphenicol-florfenicol resistance protein, CFR [Enterococcus faecalis] gi|307155389|gb|ADN34770.1| chloramphenicol-florfenicol resistance protein, CFR [Enterococcus faecalis] Length = 349 Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 106/343 (30%), Positives = 175/343 (51%), Gaps = 37/343 (10%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEIVDEKISCDGTRKWLLR 91 R QI I+ + I F+ M + + +R L +F +++ +++ E+ S + K L Sbjct: 25 RIKQITNAIFKQRISRFEDMKVLPKLLREDLINNFGETVLNIKLLAEQNS-EQVTKVLFE 83 Query: 92 FPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150 + +ETV + K+ + C+SSQ GC+ C FC TG L +NLT +EI Q Sbjct: 84 -----VSKNKRVETVNMKYKAGWESFCISSQCGCNFGCKFCATGNIGLKKNLTVDEITDQ 138 Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210 VL L G +I +I MGMGE L N V +L +D Sbjct: 139 VLYFHLL------------------GHQIDSISFMGMGEALAN-RQVFDALDSFTDPNLF 179 Query: 211 SFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 + S RR+++ST G +P+I ++ +E V L SLH+ ++ R+ L+PIN +YP++ +++ Sbjct: 180 ALSPRRLSISTIGIIPSIKKITQEYPQVNLTFSLHSPYSEERSKLMPINDRYPIDEVMNI 239 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK-----GIPAKINLIPFNPWPGC 324 + L+ +R++ Y+ML G+NDS A ++ +LK G +NLI +NP Sbjct: 240 LDEHIRLT-SRKVYIAYIMLPGVNDSLEHANEVVSLLKSRYKSGKLYHVNLIRYNPTISA 298 Query: 325 E--YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 Y +++ + F + +K +G IR+ G+DI AACGQL Sbjct: 299 PEMYGEANEGQVEAFYKVLKSAGIHVTIRSQFGIDIDAACGQL 341 >gi|302877910|ref|YP_003846474.1| radical SAM domain-containing protein [Gallionella capsiferriformans ES-2] gi|302580699|gb|ADL54710.1| radical SAM domain protein [Gallionella capsiferriformans ES-2] Length = 336 Score = 139 bits (349), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 85/270 (31%), Positives = 139/270 (51%), Gaps = 26/270 (9%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 +E+V +P RG LC+S+QVGC++ C FC +G L+R L + EI+ QV+LAR Sbjct: 88 VESVLLP---RGGLCISTQVGCAVGCVFCMSGRNGLIRQLGSAEIVAQVVLARRR----- 139 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 R++S +V MGMGEP N DNV +++ + + + + ST Sbjct: 140 --------------REVSKVVFMGMGEPAHNLDNVLEAIQLLGTQG--NIGHKNLVFSTV 183 Query: 223 GFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281 G + R+ E + LA+SLH LR L+P +E L+ HY +++ Sbjct: 184 GDLRVFERLPTETVKPALALSLHTTDAILRARLLPSAPVIAIEELVSLAEHYARITS-YP 242 Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341 + +++ +++G+NDS + ++++L G A +N IPFN G +Y + I + + Sbjct: 243 VQYQWTLIEGVNDSDAELDGIVRLLAGKYAVMNFIPFNEVDGLDYRRPSTERIAAMAYAL 302 Query: 342 KRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 KR G IR G +I ACGQL++ + R Sbjct: 303 KRQGVLVKIRDSAGQEIEGACGQLRARAIR 332 >gi|156089225|ref|XP_001612019.1| radical SAM domain containing protein [Babesia bovis] gi|154799273|gb|EDO08451.1| radical SAM domain containing protein [Babesia bovis] Length = 336 Score = 139 bits (349), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 101/314 (32%), Positives = 157/314 (50%), Gaps = 36/314 (11%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEIVDEKISCDGTRKWLLR 91 R SQI + +Y ++ M I + VR L+ HF S++ + S R + Sbjct: 28 RLSQILRSVYSAKSSNYLEMYHIPKHVREELHDHFGGSLLS---LKPTTSTKSDRACKVL 84 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 F R ++E V + + +LC+SSQVGC+ C+FC TG L RNL+ +EI QV Sbjct: 85 FENR---DKSKVEAVLLSFPTHKSLCISSQVGCAYACAFCATGRIGLKRNLSVDEITDQV 141 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 L R G +I +I MGMGEPL N NV ++++I SD+ + Sbjct: 142 LYFR------------------QNGHQIDSISFMGMGEPLSN-PNVFRAINILSDNDLFA 182 Query: 212 FSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 S RR+ +ST G +P + ++ + V LA S+H+ D RN LVP+N+ YP + + Sbjct: 183 MSSRRLNISTVGILPGLKKLNRDHPHVNLAFSMHSPFTDQRNKLVPVNQLYPFRDVFELL 242 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI------NLIPFNPWPG- 323 L+ +RI Y+++KG ND+ A L+K++ P +I NLIP+N Sbjct: 243 DERIRLT-GKRIWISYILIKGENDTREHAEELVKVISNRPDEIRYLYHVNLIPYNTVKSI 301 Query: 324 CEYLCSDQKDIVTF 337 C++ ++ I TF Sbjct: 302 CKFERTEDNVIDTF 315 >gi|34328031|ref|NP_899167.1| florfenicol/chloramphenicol resistance protein [Staphylococcus sciuri] gi|312620947|ref|YP_003927883.1| rRNA methylase [Bacillus sp. BS-02] gi|75466541|sp|Q9FBG4|CFR_STASC RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr; AltName: Full=23S rRNA m8A2503 methyltransferase gi|205829896|sp|A5HBL2|CFR_STAAU RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr; AltName: Full=23S rRNA m8A2503 methyltransferase gi|205829901|sp|A2AXI2|CFR_STAWA RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr; AltName: Full=23S rRNA m8A2503 methyltransferase gi|9909980|emb|CAC04525.1| florfenicol resistance protein [Staphylococcus sciuri] gi|33352201|emb|CAE18142.1| florfenicol/chloramphenicol resistance protein [Staphylococcus sciuri] gi|124001381|emb|CAL64019.1| rRNA methylase [Staphylococcus warneri] gi|145974708|gb|ABQ00063.1| Cfr [Staphylococcus aureus] gi|185178617|gb|ACC77590.1| 23S rRNA methylase [Staphylococcus aureus] gi|307543255|gb|ADN44269.1| rRNA methylase [Bacillus sp. BS-02] gi|308275351|emb|CBN88266.1| rRNA methylase [Staphylococcus aureus] gi|310772090|emb|CBW44219.1| rRNA methylase [Staphylococcus aureus] Length = 349 Score = 139 bits (349), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 106/343 (30%), Positives = 175/343 (51%), Gaps = 37/343 (10%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEIVDEKISCDGTRKWLLR 91 R QI I+ + I F+ M + + +R L +F +++ +++ E+ S + K L Sbjct: 25 RIKQITNAIFKQRISRFEDMKVLPKLLREDLINNFGETVLNIKLLAEQNS-EQVTKVLFE 83 Query: 92 FPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150 + +ETV + K+ + C+SSQ GC+ C FC TG L +NLT +EI Q Sbjct: 84 -----VSKNERVETVNMKYKAGWESFCISSQCGCNFGCKFCATGDIGLKKNLTVDEITDQ 138 Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210 VL L G +I +I MGMGE L N V +L +D Sbjct: 139 VLYFHLL------------------GHQIDSISFMGMGEALAN-RQVFDALDSFTDPNLF 179 Query: 211 SFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 + S RR+++ST G +P+I ++ +E V L SLH+ ++ R+ L+PIN +YP++ +++ Sbjct: 180 ALSPRRLSISTIGIIPSIKKITQEYPQVNLTFSLHSPYSEERSKLMPINDRYPIDEVMNI 239 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK-----GIPAKINLIPFNPWPGC 324 + L+ +R++ Y+ML G+NDS A ++ +LK G +NLI +NP Sbjct: 240 LDEHIRLT-SRKVYIAYIMLPGVNDSLEHANEVVSLLKSRYKSGKLYHVNLIRYNPTISA 298 Query: 325 E--YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 Y +++ + F + +K +G IR+ G+DI AACGQL Sbjct: 299 PEMYGEANEGQVEAFYKVLKSAGIHVTIRSQFGIDIDAACGQL 341 >gi|294461088|gb|ADE76111.1| unknown [Picea sitchensis] Length = 384 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 114/370 (30%), Positives = 173/370 (46%), Gaps = 49/370 (13%) Query: 17 LEEALLKIGIPQRHVRMR-TSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75 +EA L+ +R + +R IWK++ + + + +S +L F + + Sbjct: 10 FDEATLRNEFKKRGINIRCIPVIWKYLLLNENAEVFEVPGLSNAAYDVLRSKFIAMTSTV 69 Query: 76 VDEKISCD-GTRKWLLRFPARCIGGPVEIETVYI--------------PEKSRGTLCVSS 120 S D T K L++ IETV + P R TLCVSS Sbjct: 70 KATVKSADQSTTKLLIQLQNGSF-----IETVIMSYDTRLGTYAGSPRPGGPRATLCVSS 124 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC + C+FC TG+ NL+ EI+ Q++ A + +I Sbjct: 125 QVGCKMGCTFCATGSMGFKSNLSVGEIVEQLVHAARI-------------------SQIR 165 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF--SKRRITLSTSGFVPNIARVGEEI-GV 237 N+V MGMGEPL N+ +V +++ +G F + R IT+S G + I + ++ V Sbjct: 166 NVVFMGMGEPLNNYKSVVEAV---RSMIGHCFQLAPRHITISAVGVIHCINNLKYDLPNV 222 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 LA+SLHA ++R ++P R +PL L+DA Y S R+I EY+ML GIND + Sbjct: 223 NLAVSLHAPLQEIRCQIMPAARAFPLGKLMDALHAYQEHSK-RKIFIEYIMLDGINDQEQ 281 Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYS--SPIRTPRG 355 A L K+L+ +NLI FNP + +K+ V + I R Y+ + +R G Sbjct: 282 QAHLLGKLLEEYEVVVNLISFNPIGSISKYRTSKKENVELFQKILRGVYNIRTTVRQEMG 341 Query: 356 LDILAACGQL 365 DI ACGQL Sbjct: 342 QDISGACGQL 351 >gi|292493934|ref|YP_003533077.1| rRNA methylase [Bacillus sp. BS-01] gi|291276223|gb|ADD91311.1| rRNA methylase [Bacillus sp. BS-01] Length = 349 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 106/343 (30%), Positives = 175/343 (51%), Gaps = 37/343 (10%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEIVDEKISCDGTRKWLLR 91 R QI I+ + I F+ M + + +R L +F +++ +++ E+ S + K L Sbjct: 25 RIKQITNAIFKQRISRFEDMKVLPKLLREDLINNFGETVLNIKLLAEQNS-EQVTKVLFE 83 Query: 92 FPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150 + +ETV + K+ + C+SSQ GC+ C FC TG L +NLT +EI Q Sbjct: 84 -----VSKNERVETVNMKYKAGWESFCISSQCGCNFGCKFCATGDIGLKKNLTVDEITDQ 138 Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210 VL L G +I +I MGMGE L N V +L +D Sbjct: 139 VLYFHLL------------------GHQIDSISFMGMGEALAN-RQVFDALDSFTDPNLF 179 Query: 211 SFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 + S RR+++ST G +P+I ++ +E V L SLH+ ++ R+ L+PIN +YP++ +++ Sbjct: 180 ALSPRRLSISTIGIIPSIKKITQEYPQVNLTFSLHSPYSEERSKLMPINDRYPIDEVMNI 239 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK-----GIPAKINLIPFNPWPGC 324 + L+ +R++ Y+ML G+NDS A ++ +LK G +NLI +NP Sbjct: 240 LDEHIRLT-SRKVYIAYIMLPGVNDSLEHANEVVSLLKSRYKSGKLYHVNLIRYNPTISA 298 Query: 325 E--YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 Y +++ + F + +K +G IR+ G+DI AACGQL Sbjct: 299 PEMYGEANEGHVEAFYKVLKSAGIHVTIRSQFGIDIDAACGQL 341 >gi|145344512|ref|XP_001416775.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144577001|gb|ABO95068.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 298 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 99/306 (32%), Positives = 142/306 (46%), Gaps = 26/306 (8%) Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +F + ++ E S DGT ++ GG V V K R TLCVSSQVG Sbjct: 9 LRANFVLYTTKVRHESRSGDGTTTKMI---VELAGGDVVEACVMRHAKGRTTLCVSSQVG 65 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C+FC TGT + NL+A EI Q+ A S G + N+V Sbjct: 66 CKMGCTFCATGTLGELGNLSAGEICEQLAHA-------------------SRGDAVRNVV 106 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242 MGMGEPL N+ NV ++ + G S +IT+ST G +P + + + G LA+S Sbjct: 107 FMGMGEPLNNYRNVIDAIEAMTSDKGFGLSPAKITVSTVGVIPRMRTLRRDAPGTRLALS 166 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA + LR +VP Y LE L+ + + EY +L G+ND A L Sbjct: 167 LHAPNQALRQKIVPTATAYKLEDLMATLDEHMASGPKMKTMIEYCVLGGVNDDEACAREL 226 Query: 303 IKILKGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRSGYS--SPIRTPRGLDIL 359 +L+G +NLIP NP ++ ++ + E + + + +R G DI Sbjct: 227 GALLRGKEVIVNLIPLNPTDTPAGHVPPTREAVQKMLEILTSPEFDLFTTVRHEMGQDIA 286 Query: 360 AACGQL 365 ACGQL Sbjct: 287 GACGQL 292 >gi|307103703|gb|EFN51961.1| hypothetical protein CHLNCDRAFT_27272 [Chlorella variabilis] Length = 384 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 91/273 (33%), Positives = 142/273 (52%), Gaps = 43/273 (15%) Query: 98 GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157 GG V+ + R TLCVSS+VGC++ C+FC TGT L +LTA EI+ Q++ A S+ Sbjct: 107 GGWVDGWVAAMEGGKRTTLCVSSEVGCAMGCTFCATGTMGLSADLTAGEIVEQLVHASSV 166 Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217 +I NIV MGMGEPL N++ V+ ++ + +D + +R++ Sbjct: 167 -------------------SRIQNIVFMGMGEPLNNYEAVRTAVRLMTDPSSFALRRRKV 207 Query: 218 TLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276 T+ST G +P + ++ +++ GV LA+SLHA + +LR + LE Sbjct: 208 TVSTVGVIPRMLQMADDMPGVSLALSLHAPTQELRQTIY-------LE------------ 248 Query: 277 SNARRITFEYVMLK-GINDSPRDALNLIKILKGIPAKINLIPFNP--WPGCEYLCSDQKD 333 +R+ EYVML IN + A L ++L+G +NLIP+NP P + ++ Sbjct: 249 RTGQRVFVEYVMLGPDINCTQAHAHQLGRLLQGRNVLVNLIPWNPILSPSITFAAPEEGA 308 Query: 334 IVTFSECIK-RSGYSSPIRTPRGLDILAACGQL 365 F ++ + G + IR +G DI ACGQL Sbjct: 309 TAAFHSILRYQYGVNCTIRAEKGQDISGACGQL 341 >gi|299116401|emb|CBN74666.1| conserved unknown protein [Ectocarpus siliculosus] Length = 598 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 84/211 (39%), Positives = 125/211 (59%), Gaps = 23/211 (10%) Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP------EKSRGTLCVSSQVGCSLT 127 E+ D +++ DGTRK L+ G ++ETV IP + R T+CVSSQVGC++ Sbjct: 187 ELEDVQLAADGTRK-LVSVLTSGEGAGKKVETVIIPMLRGPQREPRYTVCVSSQVGCAMN 245 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC+TG L+ NL A +I+ QVL+A+ L E + PS ++ +V MGM Sbjct: 246 CQFCFTGRLGLMANLQAAQIVEQVLVAKRYL---------ETVGDPS---PVTGVVFMGM 293 Query: 188 GEPLCNFDNVKKSLSIASD-SMGLSFSKRRITLSTSGFVPNIARVGEEI--GVMLAISLH 244 GEP N+D V +++ I +D G+ +T+ST G VP I R ++ G LAISLH Sbjct: 294 GEPFDNYDRVMRAVKILTDPRAGVRLKASSVTVSTVGLVPQIERFCKDPANGASLAISLH 353 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACR-HYP 274 +V +++R+ L+P+NR+YPLE L + R H+P Sbjct: 354 SVVDEVRDKLIPVNRRYPLEQLSETLRTHFP 384 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 42/84 (50%) Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341 + EY +L G+NDS DA L + L+G+ +NLI FN G + S + F + Sbjct: 486 LAVEYTLLGGVNDSLGDAGRLAEWLEGVACVVNLITFNAHAGTPFSPSSPEAAEAFRRAL 545 Query: 342 KRSGYSSPIRTPRGLDILAACGQL 365 G R RG D +AACGQL Sbjct: 546 AARGQLCTFRDSRGDDGMAACGQL 569 >gi|108761479|ref|YP_634582.1| ribosomal RNA large subunit methyltransferase N [Myxococcus xanthus DK 1622] gi|122980702|sp|Q1CYE1|Y6459_MYXXD RecName: Full=Probable RNA methyltransferase MXAN_6459 gi|108465359|gb|ABF90544.1| radical SAM domain protein [Myxococcus xanthus DK 1622] Length = 358 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 114/360 (31%), Positives = 165/360 (45%), Gaps = 37/360 (10%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL---LNQHFSII 71 +ELE AL + VR +++ ++ G + + ++ Q R + L H + Sbjct: 9 QELEAALAPLSPSPAAVR----KVFAAVFAHGAQSVEDVASARQVPRRVGDHLRAHAEMP 64 Query: 72 YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSF 130 IV+ + + DG K+L P +GG IE V IP + +CVSSQVGC+L C F Sbjct: 65 KLAIVERRRADDGFVKYLFDSP---LGG--RIEAVRIPIFDEKYVICVSSQVGCALACDF 119 Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 C TG RNL EIL QVL R R + +V MGMGEP Sbjct: 120 CMTGKLGFKRNLQTWEILDQVLQVRE-----------------EADRPVRGVVFMGMGEP 162 Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLAISLHAVSND 249 L N+ ++ I G S + IT ST+G VP I R V E LA S+ + + Sbjct: 163 LLNYKETLRAADILRHPAGFSIAGEAITFSTAGHVPAIRRYVREGHPYRLAFSVTSAIAE 222 Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309 R ++PI + +PL LI A R Y + R + YV + G N DA L +GI Sbjct: 223 KRAKVLPIEKTHPLPELIAAIREYSEVRRERAM-IAYVAISGFNMGREDAEALKVAFEGI 281 Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI--RTPRGLDILAACGQLKS 367 K++LI P +YL +++ F + ++ SP+ R G +I AACG L + Sbjct: 282 RIKVDLIDVTD-PTGKYLPPTPEELSAFRDHLQI--LKSPVARRYSGGKEIGAACGTLAA 338 >gi|330503480|ref|YP_004380349.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas mendocina NK-01] gi|328917766|gb|AEB58597.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas mendocina NK-01] Length = 346 Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 89/294 (30%), Positives = 145/294 (49%), Gaps = 31/294 (10%) Query: 75 IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134 + E DG+ + L+ R + +E+V +P R LC+SSQVGC++ C+FC TG Sbjct: 67 VSTEHPGADGSSRLLVELADRQM-----VESVLLP---RDGLCISSQVGCAVGCTFCMTG 118 Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194 L+R L++ E++ QV+L R R + +V MGMGEP N Sbjct: 119 KSGLLRQLSSAEMVAQVVLGRRR-------------------RAVKKVVFMGMGEPAHNL 159 Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNI 253 DNV +++ + G+ R + ST G R+ + + LA+SLH +LR Sbjct: 160 DNVLEAIDLLGTEGGIGH--RNLVFSTVGDPRVFERLPRQRVRPALALSLHTTDAELRQR 217 Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313 L+P + E L++ Y + I +++ +LKGINDS ++ N++++ KG A + Sbjct: 218 LLPRAPRIDPEQLMELGEAYARAIDYP-IQYQWTLLKGINDSQQEMDNILRLFKGKFAVL 276 Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 NLIP+N EY + + IV + G + +R G D+ CGQL++ Sbjct: 277 NLIPYNSLEADEYRRPEGERIVEMVRYLHSRGVLTKVRNSAGQDVDGGCGQLRA 330 >gi|258597636|ref|XP_001348239.2| radical SAM protein, putative [Plasmodium falciparum 3D7] gi|255528761|gb|AAN36678.2| radical SAM protein, putative [Plasmodium falciparum 3D7] Length = 362 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 117/381 (30%), Positives = 173/381 (45%), Gaps = 47/381 (12%) Query: 20 ALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ--HFSIIYPEIVD 77 +L+K+ ++ + R QI IY I + M +I E+R L H +I+ + + Sbjct: 9 SLIKMMERKKFEKYRLKQIMDNIYKGKIIEINKMKNIPTEIRRELKNIFHNNILSIKPIK 68 Query: 78 EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137 E + D K L + C +IE + S +LC+SSQ+GCS C FC TG Sbjct: 69 E-LKYDRAYKVLFQ----CKDNE-KIEATSLDFGSHKSLCISSQIGCSFGCKFCATGQIG 122 Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN---F 194 + R L +EI Q+L S G I NI MGMGEPL N F Sbjct: 123 IKRQLDIDEITDQLL------------------YFQSKGVDIKNISFMGMGEPLANPYVF 164 Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNI 253 D S+ +D+ S S RRI +ST G +P I ++ V LA SLH+ + R+ Sbjct: 165 D----SIQFFNDNNLFSISNRRINISTVGLLPGIKKLNNIFPQVNLAFSLHSPFTEERDQ 220 Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313 LVPIN+ +P + D + RR+ Y+++K +NDS A L + P I Sbjct: 221 LVPINKLFPFNEVFDLLDERIAKT-GRRVWISYILIKNLNDSKDHAEALSDHICKRPNNI 279 Query: 314 N------LIPFNPWPGCE---YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 LIP+N + + D + I+ F + +K++G S R G I AACGQ Sbjct: 280 RYLYNVCLIPYNKAKNVDENFHRLDDAEKILQFEKILKKNGISFFYRNSFGYSIDAACGQ 339 Query: 365 LKSL---SKRIPKVPRQEMQI 382 L + KR K+ + M + Sbjct: 340 LYADYEPKKRKEKIESKNMSL 360 >gi|152984959|ref|YP_001348813.1| hypothetical protein PSPA7_3453 [Pseudomonas aeruginosa PA7] gi|205829651|sp|A6V6X8|Y3453_PSEA7 RecName: Full=Probable RNA methyltransferase PSPA7_3453 gi|150960117|gb|ABR82142.1| hypothetical protein PSPA7_3453 [Pseudomonas aeruginosa PA7] Length = 346 Score = 137 bits (344), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 96/325 (29%), Positives = 158/325 (48%), Gaps = 48/325 (14%) Query: 51 QGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE 110 QG+ +++E+ + H E + DG+ + L+ R +E+V +P Sbjct: 52 QGLPRVAEELEGIARLH---------SEHPASDGSSRLLVELADR-----QRVESVLLP- 96 Query: 111 KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 RG LCVS+QVGC++ C FC TG L+R + + E++ QV+LAR Sbjct: 97 --RGGLCVSTQVGCAVGCVFCMTGRSGLLRQVGSLEMVAQVVLARRR------------- 141 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230 R + +V MGMGEP N DNV +++ + G+ + + ST G R Sbjct: 142 ------RAVKKVVFMGMGEPAHNLDNVLEAIDLLGTDGGIGH--KNLVFSTVGDPRVFER 193 Query: 231 V-GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR----ITFE 285 + G+ + LA+SLH+ +LR L+P E L++A Y AR+ I ++ Sbjct: 194 LPGQRVKPALALSLHSTDAELRRRLLPKAPPLSPEELVEAGETY-----ARQVDYPIQYQ 248 Query: 286 YVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSG 345 + +L+G+NDS + ++++LKG A +NLIP+N G Y + IV + G Sbjct: 249 WTLLEGVNDSLEEMDGILRLLKGRFAVMNLIPYNSMDGDAYRRPRGERIVELVRYLHSRG 308 Query: 346 YSSPIRTPRGLDILAACGQLKSLSK 370 + +R G DI CGQL++ ++ Sbjct: 309 VLTKVRNSAGQDIDGGCGQLRARAE 333 >gi|327480837|gb|AEA84147.1| Fe-S-cluster redox protein [Pseudomonas stutzeri DSM 4166] Length = 342 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 90/296 (30%), Positives = 147/296 (49%), Gaps = 31/296 (10%) Query: 78 EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137 E + DG+ + L+ +G +E+V +P R LCVSSQVGC++ C FC TG Sbjct: 70 EHPAADGSARLLVE-----LGDGQMVESVLLP---RDGLCVSSQVGCAVGCVFCMTGKSG 121 Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197 L+R L + EI+ QV LAR R + +V MGMGEP N DNV Sbjct: 122 LLRQLGSAEIVAQVALARRF-------------------RPVKKVVFMGMGEPAHNLDNV 162 Query: 198 KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVP 256 +++ + G+ + + ST G + R+ ++ + LA+SLH+ LR L+P Sbjct: 163 LEAIDLLGTEGGIGH--KNLVFSTVGDLRVFERLPQQRVKPALALSLHSTDGALRQALLP 220 Query: 257 INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLI 316 + E L++ Y + I +++ +LKGIND+ + ++++LKG A +NLI Sbjct: 221 RAPQIAPEELVELGETY-ARATGFPIQYQWTLLKGINDNQEEMDGILRLLKGKYAVMNLI 279 Query: 317 PFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRI 372 P+N Y + + IV + G + +R G DI CGQL++ ++++ Sbjct: 280 PYNSLEDDAYQRPEGERIVQIVRYLHSRGVLTKVRNSAGQDIDGGCGQLRARAEQV 335 >gi|226945006|ref|YP_002800079.1| ribosomal RNA large subunit methyltransferase N [Azotobacter vinelandii DJ] gi|226719933|gb|ACO79104.1| Fe-S cluster redox enzyme, radical SAM family [Azotobacter vinelandii DJ] Length = 344 Score = 136 bits (343), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 102/360 (28%), Positives = 168/360 (46%), Gaps = 42/360 (11%) Query: 16 ELEEALLKIGIPQRHV-RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII--Y 72 + + L +G H+ R+ + + W G R Q + VR + + + + Sbjct: 5 DFHQRLADLGAKSPHIGRIDRAWLHGWPLDTGTRQQQARDFLPLGVREAMPELHATVAGL 64 Query: 73 PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132 + E + DG+ + L+ +G +E+V +P R LCVSSQVGC++ C FC Sbjct: 65 ARLRSEHPAADGSARLLVE-----LGDGQMVESVLLP---RDGLCVSSQVGCAVGCVFCM 116 Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192 TG L+R L + EI+ QV LAR R + +V MGMGEP Sbjct: 117 TGRSGLLRQLGSAEIVAQVALARRF-------------------RPVKKVVFMGMGEPAH 157 Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLR 251 N DNV +++ + + G+ + + ST G R+ + + LA+SLH+ LR Sbjct: 158 NLDNVLEAIDLLGTAGGIGH--KNLVFSTVGDPRVFERLPQGRVKPALALSLHSSDAGLR 215 Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARR----ITFEYVMLKGINDSPRDALNLIKILK 307 L+P + + L++ Y ARR I +++ +L+GINDS + ++++L+ Sbjct: 216 RRLLPHAPRLDPQELVELAEAY-----ARRTGYPIQYQWTLLEGINDSLEEMDGILRLLR 270 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 G A +NLIP+N +Y D + IV + G + +R G DI CGQL++ Sbjct: 271 GKYAVMNLIPYNSLEADDYRRPDGERIVGLVRYLHGRGVLTKVRNSAGQDIDGGCGQLRA 330 >gi|146282579|ref|YP_001172732.1| Fe-S-cluster redox protein [Pseudomonas stutzeri A1501] gi|205829636|sp|A4VLN9|Y2231_PSEU5 RecName: Full=Probable RNA methyltransferase PST_2231 gi|145570784|gb|ABP79890.1| predicted Fe-S-cluster redox enzyme [Pseudomonas stutzeri A1501] Length = 342 Score = 136 bits (343), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 90/296 (30%), Positives = 146/296 (49%), Gaps = 31/296 (10%) Query: 78 EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137 E + DG+ + L+ +G +E+V +P R LCVSSQVGC++ C FC TG Sbjct: 70 EHPAADGSARLLVE-----LGDGQMVESVLLP---RDGLCVSSQVGCAVGCVFCMTGKSG 121 Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197 L+R L + EI+ QV LAR R + +V MGMGEP N DNV Sbjct: 122 LLRQLGSAEIVAQVALARRF-------------------RPVKKVVFMGMGEPAHNLDNV 162 Query: 198 KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVP 256 +++ + G+ + + ST G + R+ ++ + LA+SLH+ LR L+P Sbjct: 163 LEAIDLLGTEGGIGH--KNLVFSTVGDLRVFERLPQQRVKPALALSLHSTDGALRQALLP 220 Query: 257 INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLI 316 + E L++ Y + I +++ +LKGIND+ + ++++LKG A +NLI Sbjct: 221 RAPQIAPEELVELGETY-ARATGFPIQYQWTLLKGINDNQEEMDGILRLLKGKYAVMNLI 279 Query: 317 PFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRI 372 P+N Y + + IV + G + +R G DI CGQL++ ++ + Sbjct: 280 PYNSLEDDAYQRPEGERIVQIVRYLHSRGVLTKVRNSAGQDIDGGCGQLRARAEHV 335 >gi|289524569|ref|ZP_06441423.1| radical SAM enzyme, Cfr family [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502191|gb|EFD23355.1| radical SAM enzyme, Cfr family [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 197 Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 81/219 (36%), Positives = 124/219 (56%), Gaps = 23/219 (10%) Query: 38 IWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCI 97 I +WIY + + DFQ M+++S+E+R L + P + E+ S DGT+K+L +F Sbjct: 1 ICQWIYQKKVFDFQEMTNLSKELRGKLADAVMVAPPILTREETSKDGTKKYLWQFH---- 56 Query: 98 GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157 +E+V + ++ R T C+S+QVGC L C+FC +G VR+L+A EI+ Q L L Sbjct: 57 -DGERVESVLLTQEGRLTACLSTQVGCPLACAFCASGQGGFVRDLSAGEIVGQFLAMEKL 115 Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217 GR I N+V MGMGEP N ++V KS+ I ++ RRI Sbjct: 116 -----------------AGRDIDNVVYMGMGEPFLNQESVFKSIKILNEPKMRGLGIRRI 158 Query: 218 TLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILV 255 T+ST+G VP I + E ++ V L++SLHA ++ LR+ L+ Sbjct: 159 TISTAGIVPGILALAEAQMPVKLSVSLHAPNDRLRSKLM 197 >gi|254240233|ref|ZP_04933555.1| hypothetical protein PA2G_00875 [Pseudomonas aeruginosa 2192] gi|126193611|gb|EAZ57674.1| hypothetical protein PA2G_00875 [Pseudomonas aeruginosa 2192] Length = 346 Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 101/327 (30%), Positives = 159/327 (48%), Gaps = 47/327 (14%) Query: 60 VRHLLNQHFSII--YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLC 117 VRH L Q + + + E + DG+ + L+ R + +E+V +P RG LC Sbjct: 50 VRHGLPQVAAELEGIARLHSEHPASDGSSRLLVELADRQM-----VESVLLP---RGGLC 101 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 VS+QVGC++ C FC TG L+R + + E++ QV+LAR R Sbjct: 102 VSTQVGCAVGCVFCMTGRSGLLRQVGSLEMVAQVVLARRR-------------------R 142 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIG 236 + +V MGMGEP N DNV +++ + G+ + + ST G R+ + + Sbjct: 143 AVKKVVFMGMGEPAHNLDNVLEAIDLLGTDGGIGH--KNLVFSTVGDPRVFERLPRQRVK 200 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR----ITFEYVMLKGI 292 LA+SLH+ +LR L+P E L++A Y ARR I +++ +L+GI Sbjct: 201 PALALSLHSTRAELRRQLLPKAPPLSPEELVEAGEAY-----ARRVDYPIQYQWTLLEGI 255 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 NDS + ++++LKG A +NLIP+N G Y + IV + G + +R Sbjct: 256 NDSLEEMDGILRLLKGRFAVMNLIPYNSMDGDAYRRPSGERIVELVRYLHSRGVLTKVRN 315 Query: 353 PRGLDILAACGQLK------SLSKRIP 373 G DI CGQL+ ++ +RIP Sbjct: 316 SAGQDIDGGCGQLRARATQGTVERRIP 342 >gi|218892205|ref|YP_002441072.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa LESB58] gi|218772431|emb|CAW28213.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa LESB58] Length = 346 Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 101/327 (30%), Positives = 159/327 (48%), Gaps = 47/327 (14%) Query: 60 VRHLLNQHFSII--YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLC 117 VRH L Q + + + E + DG+ + L+ R + +E+V +P RG LC Sbjct: 50 VRHGLPQVAAELEGIARLHSEHPASDGSSRLLVELADRQM-----VESVLLP---RGGLC 101 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 VS+QVGC++ C FC TG L+R + + E++ QV+LAR R Sbjct: 102 VSTQVGCAVGCVFCMTGRSGLLRQVGSLEMVAQVVLARRR-------------------R 142 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIG 236 + +V MGMGEP N DNV +++ + G+ + + ST G R+ + + Sbjct: 143 AVKKVVFMGMGEPAHNLDNVLEAIDLLGTDGGIGH--KNLVFSTVGDPRVFERLPRQRVK 200 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR----ITFEYVMLKGI 292 LA+SLH+ +LR L+P E L++A Y ARR I +++ +L+GI Sbjct: 201 PALALSLHSTRAELRRQLLPKAPPLSPEELVEAGEAY-----ARRVDYPIQYQWTLLEGI 255 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 NDS + ++++LKG A +NLIP+N G Y + IV + G + +R Sbjct: 256 NDSLEEMDGILRLLKGRFAVMNLIPYNSMDGDAYRRPSGERIVELVRYLHSRGVLTKVRN 315 Query: 353 PRGLDILAACGQLK------SLSKRIP 373 G DI CGQL+ ++ +RIP Sbjct: 316 SAGQDIDGGCGQLRARATQATVERRIP 342 >gi|332531263|ref|ZP_08407176.1| ribosomal RNA large subunit methyltransferase N [Hylemonella gracilis ATCC 19624] gi|332039370|gb|EGI75783.1| ribosomal RNA large subunit methyltransferase N [Hylemonella gracilis ATCC 19624] Length = 357 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 88/273 (32%), Positives = 137/273 (50%), Gaps = 30/273 (10%) Query: 103 IETVYIP---EKSRG-TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLL 158 +E+V +P + R TLCVS+QVGC++ C FC TG L+R L + EI+ QV LAR+ Sbjct: 88 VESVLMPTAGSRQRAPTLCVSTQVGCAVGCVFCMTGRAGLIRQLGSAEIVAQVALARA-- 145 Query: 159 GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRIT 218 + +V MGMGEP N DNV +++ + + + + Sbjct: 146 -----------------SATVRRVVFMGMGEPAHNLDNVLEAIDLLGTAG--DIGHKNLV 186 Query: 219 LSTSG----FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274 ST G F +R +++ LA+SLH DLR L+P + E L+DA Y Sbjct: 187 FSTVGDPRVFEALQSRGADQVRPALALSLHTTRADLRAQLLPRAPRLTPEELVDAGERYA 246 Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDI 334 L+ A I +++ +L GINDS + L+++L+G A +NLIP+N Y Q+ Sbjct: 247 RLT-AYPIQYQWTLLDGINDSDEEIEGLVRLLQGKYAILNLIPYNAVDDLPYRRPAQEAA 305 Query: 335 VTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 V + + + G + +R G D+ CGQL++ Sbjct: 306 VAMARRLHQRGILTKLRQSAGQDVDGGCGQLRA 338 >gi|298706960|emb|CBJ29779.1| conserved unknown protein [Ectocarpus siliculosus] Length = 531 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 98/280 (35%), Positives = 138/280 (49%), Gaps = 43/280 (15%) Query: 17 LEEALLKIGIPQRHVR-MRTSQIWKWIYVRGI-----RDFQGMSD------ISQEVRHLL 64 L+EALL + + ++ + + +W + G F G D LL Sbjct: 13 LDEALLSAALREEGIKELHAASVWHYALSEGKLHGSDATFDGFEDGKFYMSAPAPTGPLL 72 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS---RGTLCVSSQ 121 + F+++ +V+ + S DGT K L+R + +ETV I R TLCVSSQ Sbjct: 73 RRKFAVLTSTVVETQRSEDGTVKLLVRLQDGQM-----VETVIIKHNGTHPRTTLCVSSQ 127 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC + C+FC TGT L +LTA EIL QVL A + I N Sbjct: 128 VGCQMACTFCATGTMGLKGDLTAGEILEQVLHASRV-------------------SPIRN 168 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLA 240 +V MGMGEPL N+D V S+ +DS S R ITLST G VP + ++ + LA Sbjct: 169 VVFMGMGEPLNNYDAVLASIRGMADSRMFKLSPRHITLSTVGVVPRMKQLTIDAPETQLA 228 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHY---PGLS 277 +SLHA + +LRN +VP R Y L+ L+DA + PG++ Sbjct: 229 LSLHAPNQELRNRIVPSARAYRLDKLMDALDGHLRGPGVA 268 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 36/94 (38%), Positives = 47/94 (50%), Gaps = 3/94 (3%) Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP--WPGC-EYLCSDQ 331 G RR EYVML G+ND+ L ++LKG +NLIP+NP PG E+ + Sbjct: 332 GRGAGRRALIEYVMLAGVNDTEECGRELGELLKGRNVLVNLIPYNPTYAPGSEEFKEPTE 391 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + + F + G IR G DI ACGQL Sbjct: 392 EALQKFRAIVHEHGLLVTIRRHHGRDIDGACGQL 425 >gi|254234935|ref|ZP_04928258.1| hypothetical protein PACG_00810 [Pseudomonas aeruginosa C3719] gi|126166866|gb|EAZ52377.1| hypothetical protein PACG_00810 [Pseudomonas aeruginosa C3719] Length = 346 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 101/327 (30%), Positives = 159/327 (48%), Gaps = 47/327 (14%) Query: 60 VRHLLNQHFSII--YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLC 117 VRH L Q + + + E + DG+ + L+ R + +E+V +P RG LC Sbjct: 50 VRHGLPQVAAELEGIARLHSEHPASDGSSRLLVELADRQM-----VESVLLP---RGGLC 101 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 VS+QVGC++ C FC TG L+R + + E++ QV+LAR R Sbjct: 102 VSTQVGCAVGCVFCMTGRSGLLRQVGSLEMVAQVVLARRR-------------------R 142 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIG 236 + +V MGMGEP N DNV +++ + G+ + + ST G R+ + + Sbjct: 143 AVKKVVFMGMGEPAHNLDNVLEAIDLLGTDGGIGH--KNLVFSTVGDPRVFERLPRQRVK 200 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR----ITFEYVMLKGI 292 LA+SLH+ +LR L+P E L++A Y ARR I +++ +L+GI Sbjct: 201 PALALSLHSTRAELRRQLLPKAPPLSPEELVEAGEAY-----ARRVDYPIQYQWTLLEGI 255 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 NDS + ++++LKG A +NLIP+N G Y + IV + G + +R Sbjct: 256 NDSLEEMDGILRLLKGRFAVMNLIPYNSMDGDAYRRPSGERIVELVRYLHSRGVLTKVRN 315 Query: 353 PRGLDILAACGQLKSLS------KRIP 373 G DI CGQL++ + +RIP Sbjct: 316 SAGQDIDGGCGQLRARAAQGTAERRIP 342 >gi|15597036|ref|NP_250530.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas aeruginosa PAO1] gi|107101272|ref|ZP_01365190.1| hypothetical protein PaerPA_01002306 [Pseudomonas aeruginosa PACS2] gi|313110540|ref|ZP_07796425.1| hypothetical protein PA39016_002410127 [Pseudomonas aeruginosa 39016] gi|81622417|sp|Q9I2Q6|Y1839_PSEAE RecName: Full=Probable RNA methyltransferase PA1839 gi|9947826|gb|AAG05228.1|AE004610_1 hypothetical protein PA1839 [Pseudomonas aeruginosa PAO1] gi|310882927|gb|EFQ41521.1| hypothetical protein PA39016_002410127 [Pseudomonas aeruginosa 39016] Length = 346 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 101/327 (30%), Positives = 159/327 (48%), Gaps = 47/327 (14%) Query: 60 VRHLLNQHFSII--YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLC 117 VRH L Q + + + E + DG+ + L+ R + +E+V +P RG LC Sbjct: 50 VRHGLPQVAAELEGIARLHSEHPASDGSSRLLVELADRQM-----VESVLLP---RGGLC 101 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 VS+QVGC++ C FC TG L+R + + E++ QV+LAR R Sbjct: 102 VSTQVGCAVGCVFCMTGRSGLLRQVGSLEMVAQVVLARRR-------------------R 142 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIG 236 + +V MGMGEP N DNV +++ + G+ + + ST G R+ + + Sbjct: 143 AVKKVVFMGMGEPAHNLDNVLEAIDLLGTDGGIGH--KNLVFSTVGDPRVFERLPRQRVK 200 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR----ITFEYVMLKGI 292 LA+SLH+ +LR L+P E L++A Y ARR I +++ +L+GI Sbjct: 201 PALALSLHSTRAELRRQLLPKAPPLSPEELVEAGEAY-----ARRVDYPIQYQWTLLEGI 255 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 NDS + ++++LKG A +NLIP+N G Y + IV + G + +R Sbjct: 256 NDSLEEMDGILRLLKGRFAVMNLIPYNSMDGDAYRRPSGERIVELVRYLHSRGVLTKVRN 315 Query: 353 PRGLDILAACGQLKSLS------KRIP 373 G DI CGQL++ + +RIP Sbjct: 316 SAGQDIDGGCGQLRARATQGTAERRIP 342 >gi|296389768|ref|ZP_06879243.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas aeruginosa PAb1] Length = 346 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 101/327 (30%), Positives = 159/327 (48%), Gaps = 47/327 (14%) Query: 60 VRHLLNQHFSII--YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLC 117 VRH L Q + + + E + DG+ + L+ R + +E+V +P RG LC Sbjct: 50 VRHGLPQVAAELEGIARLHSEHPASDGSSRLLVELADRQM-----VESVLLP---RGGLC 101 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 VS+QVGC++ C FC TG L+R + + E++ QV+LAR R Sbjct: 102 VSTQVGCAVGCVFCMTGRSGLLRQVGSLEMVAQVVLARRR-------------------R 142 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIG 236 + +V MGMGEP N DNV +++ + G+ + + ST G R+ + + Sbjct: 143 AVKKVVFMGMGEPAHNLDNVLEAIDLLGTDGGIGH--KNLVFSTVGDPRVFERLPRQRVK 200 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR----ITFEYVMLKGI 292 LA+SLH+ +LR L+P E L++A Y ARR I +++ +L+GI Sbjct: 201 PALALSLHSTRAELRRQLLPKAPPLSPEELVEAGEAY-----ARRVDYPIQYQWTLLEGI 255 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 NDS + ++++LKG A +NLIP+N G Y + IV + G + +R Sbjct: 256 NDSLEEMDGILRLLKGRFAVMNLIPYNSMDGDAYRRPSGERIVELVRYLHSRGVLTKVRN 315 Query: 353 PRGLDILAACGQLKSLS------KRIP 373 G DI CGQL++ + +RIP Sbjct: 316 SAGQDIDGGCGQLRARATQGTAERRIP 342 >gi|116049791|ref|YP_791402.1| hypothetical protein PA14_40730 [Pseudomonas aeruginosa UCBPP-PA14] gi|122258902|sp|Q02KY4|Y4073_PSEAB RecName: Full=Probable RNA methyltransferase PA14_40730 gi|115585012|gb|ABJ11027.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa UCBPP-PA14] Length = 346 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 101/327 (30%), Positives = 159/327 (48%), Gaps = 47/327 (14%) Query: 60 VRHLLNQHFSII--YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLC 117 VRH L Q + + + E + DG+ + L+ R + +E+V +P RG LC Sbjct: 50 VRHGLPQVAAELEGIARLHSEHPASDGSSRLLVELADRQM-----VESVLLP---RGGLC 101 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 VS+QVGC++ C FC TG L+R + + E++ QV+LAR R Sbjct: 102 VSTQVGCAVGCVFCMTGRSGLLRQVGSLEMVAQVVLARRR-------------------R 142 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIG 236 + +V MGMGEP N DNV +++ + G+ + + ST G R+ + + Sbjct: 143 AVKKVVFMGMGEPAHNLDNVLEAIDLLGTDGGIGH--KNLVFSTVGDPRVFERLPLQRVK 200 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR----ITFEYVMLKGI 292 LA+SLH+ +LR L+P E L++A Y ARR I +++ +L+GI Sbjct: 201 PALALSLHSTRAELRRQLLPKAPPLSPEELVEAGEAY-----ARRVDYPIQYQWTLLEGI 255 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 NDS + ++++LKG A +NLIP+N G Y + IV + G + +R Sbjct: 256 NDSLEEMDGILRLLKGRFAVMNLIPYNSMDGDAYRRPSGERIVELVRYLHSRGVLTKVRN 315 Query: 353 PRGLDILAACGQLKSLS------KRIP 373 G DI CGQL++ + +RIP Sbjct: 316 SAGQDIDGGCGQLRARATQGTAERRIP 342 >gi|146307182|ref|YP_001187647.1| radical SAM domain-containing protein [Pseudomonas mendocina ymp] gi|205829635|sp|A4XU99|Y2155_PSEMY RecName: Full=Probable RNA methyltransferase Pmen_2155 gi|145575383|gb|ABP84915.1| Radical SAM domain protein [Pseudomonas mendocina ymp] Length = 346 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 89/291 (30%), Positives = 142/291 (48%), Gaps = 31/291 (10%) Query: 78 EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137 E DG+ + L+ + + +E+V +P R LC+SSQVGC++ C FC TG Sbjct: 70 EHPGADGSARLLVELADKQM-----VESVLLP---RDGLCISSQVGCAVGCVFCMTGKSG 121 Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197 L+R L++ E++ QV L R R + +V MGMGEP N DNV Sbjct: 122 LLRQLSSAEMVAQVALGRRF-------------------RPVKKVVFMGMGEPAHNLDNV 162 Query: 198 KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVP 256 +++ + G+ + + ST G R+ ++ + LA+SLH +LR L+P Sbjct: 163 LEAIDLLGTEGGIGH--KNLVFSTVGDPRVFERLPQQRVRPALALSLHTTDAELRQRLLP 220 Query: 257 INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLI 316 + E L++ Y S I +++ +LKGINDS ++ N++++ KG A +NLI Sbjct: 221 KAPRIDPEQLMELGEAY-ARSIDYPIQYQWTLLKGINDSQQEMDNILRLFKGKFAVLNLI 279 Query: 317 PFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 P+N Y D + IV + G + +R G DI CGQL++ Sbjct: 280 PYNSLDADNYQRPDGERIVQMVRYLHSRGVLTKVRNSAGQDIDGGCGQLRA 330 >gi|222624395|gb|EEE58527.1| hypothetical protein OsJ_09817 [Oryza sativa Japonica Group] Length = 356 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 83/236 (35%), Positives = 126/236 (53%), Gaps = 23/236 (9%) Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168 P R TLCVSSQVGC + C FC TGT NL++ EI +E Sbjct: 126 PGGVRSTLCVSSQVGCKMGCRFCATGTMGFKSNLSSGEI-------------------VE 166 Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228 +V S +I N+V MGMGEPL N+ + +++ + S S +RIT+ST G + +I Sbjct: 167 QLVHASRYSQIRNVVFMGMGEPLNNYTALVEAIQVLIGS-PFQLSPKRITVSTVGIIHSI 225 Query: 229 ARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 + ++ + LA+SLHA D+R ++P R +PL L++A + Y S + I EY+ Sbjct: 226 NKFNNDLPNINLAVSLHAPDQDIRCHIMPAARAFPLVKLMNALQSYQNESK-QTIFIEYI 284 Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNP-WPGCEYLCSDQKDIVTFSECIK 342 ML G+ND + A L K+L+ A +NLIPFNP + S + ++ F + ++ Sbjct: 285 MLDGVNDQEQHAHQLGKLLEMFKAVVNLIPFNPIGSSNNFKTSSEHNVKKFQKILR 340 >gi|82523823|emb|CAI78565.1| hypothetical protein [uncultured candidate division OP8 bacterium] Length = 365 Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 109/364 (29%), Positives = 175/364 (48%), Gaps = 49/364 (13%) Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKW-IYVRGIRDFQG--MSDISQEVRHLLNQHFSIIY 72 EL AL G+ R R + + K + R + + ++ I +EVR Sbjct: 32 ELHAALAPEGVSLRLARRLQAAVLKRDAFPRTLPEVSDKMLARIREEVR----------L 81 Query: 73 PEIV--DEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-----TLCVSSQVGC 124 P++V D+ +S DG K+L + GP E V IP R C+SSQVGC Sbjct: 82 PKLVLKDKAVSARDGFAKYLFQG-----DGPEPFEAVRIPLLHRSGDEKYIACLSSQVGC 136 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC TG VRNL+A E++ QV+ + D E I V Sbjct: 137 ALGCAFCATGRMGFVRNLSAWEMVDQVIRLSA---------DSE--------HPIRGAVF 179 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLAISL 243 MGMGEP+ N++ V ++ I + GL+ S + +++ST+G VP I R + + L +SL Sbjct: 180 MGMGEPMLNYEAVVRAARILCEPCGLAVSAKAVSISTAGVVPGIRRFTADRLPFRLVVSL 239 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 + + R ++P+ + YPL L++A R Y S+ +R+ + M+ G N DA+ L Sbjct: 240 TSADSARRREVMPLEQAYPLTDLMEAVREYHK-SSGQRVILAWTMISGFNTREEDAVQLA 298 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI--RTPRGLDILAA 361 +++G+P +++LI N G + ++ F + + + P+ R G DI AA Sbjct: 299 ALVRGLPIRLDLIDVNDATG-RFKPPSSLELHEFRDALSKH-LKMPVARRYSGGKDIRAA 356 Query: 362 CGQL 365 CG L Sbjct: 357 CGML 360 >gi|222619965|gb|EEE56097.1| hypothetical protein OsJ_04941 [Oryza sativa Japonica Group] Length = 363 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 109/374 (29%), Positives = 164/374 (43%), Gaps = 70/374 (18%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQH 67 L+G+ +L + + +G R Q+ +Y + Q S + + R L+ Sbjct: 36 LLGLSEPDLRQLAVDLG----QQSYRGKQLHDLLYKSRAKQIQEFSHVPKVFREALVGAG 91 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-----SRGTLCVSSQV 122 + + + + DGT K LL+ + IETV IP SR T CVSSQV Sbjct: 92 WKVGRSPVHHAVTASDGTTKILLKLEDNRL-----IETVGIPVDDDKGPSRLTACVSSQV 146 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L CSFC TG RNL A EI+ QVL + + +++N+ Sbjct: 147 GCPLRCSFCATGKGGFARNLHAHEIVEQVL-----------------AIEETFQHRVTNV 189 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAI 241 V MGMGEP+ N +V ++ + L +R IT+ST G I ++ ++ LA+ Sbjct: 190 VFMGMGEPMLNLKSVLEAHRCLNKE--LKIGQRMITISTVGVPSTIKKLASHKLQSTLAV 247 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA + LR +VP GIND+ A Sbjct: 248 SLHAPNQKLRETIVPT---------------------------------GINDAKEHAEE 274 Query: 302 LIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L ++L G +NLIP+NP G EY +K + F + ++ + +R RGLD Sbjct: 275 LAELLHTCGGGYHVNLIPYNPIQGSEYKRPYRKVVQAFVDALEARKITVSVRQTRGLDAN 334 Query: 360 AACGQLKSLSKRIP 373 AACGQL++ ++ P Sbjct: 335 AACGQLRNEFQKNP 348 >gi|162452171|ref|YP_001614538.1| hypothetical protein sce3898 [Sorangium cellulosum 'So ce 56'] gi|205829653|sp|A9EPV3|Y3898_SORC5 RecName: Full=Probable RNA methyltransferase sce3898 gi|161162753|emb|CAN94058.1| hypothetical protein sce3898 [Sorangium cellulosum 'So ce 56'] Length = 393 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 94/292 (32%), Positives = 141/292 (48%), Gaps = 37/292 (12%) Query: 103 IETVYIP--EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160 +E+V IP R + CVSSQVGC+L C+FC TG L RNL A EI+ QV L R Sbjct: 81 VESVRIPLERPGRYSACVSSQVGCALACAFCATGRMGLTRNLEAWEIVEQVRLIR----- 135 Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLS 220 D++ V G ++ ++ GMGEPL N D V +++ + S+ + R IT+ Sbjct: 136 ----RDLDATV--GGGARVHGVLFQGMGEPLANADRVIQAIRVLSEPSAQAIDMRNITVC 189 Query: 221 TSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279 T+G I R+ E+ V L +SL +V R +L+PI+ +PLE ++ A + ++ Sbjct: 190 TAGLPSGIRRLAAEVPAVRLGLSLGSVRPGKRRLLMPIDGAHPLEEVLAAVGEH-ARASG 248 Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIPA------KINLIPFNP--WPGCEYLCSDQ 331 + Y +L ND+ DA L + +G A +++LIP+N PG D Sbjct: 249 HAPMWAYTLLADQNDTDEDAACLAALARGFAAQHGISPRLSLIPYNAIGAPGDPLPSPDG 308 Query: 332 KD--------------IVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369 D + F + +G S +R G D+ AACGQL S Sbjct: 309 GDERGASADPFVRSARLDAFRAVLSAAGVGSIVRYSGGGDVGAACGQLARPS 360 >gi|319795747|ref|YP_004157387.1| radical SAM protein [Variovorax paradoxus EPS] gi|315598210|gb|ADU39276.1| Radical SAM domain protein [Variovorax paradoxus EPS] Length = 356 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 82/266 (30%), Positives = 132/266 (49%), Gaps = 26/266 (9%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 +E+V +P R LCVSSQVGC++ C FC TG L+R + + EI+ QV LAR+ Sbjct: 88 VESVLLP---RDGLCVSSQVGCAVGCQFCMTGRDGLLRQVGSAEIIAQVALARTR----- 139 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 RK+ +V MGMGEP N DNV +++ + ++G + + + ST Sbjct: 140 --------------RKVRKVVFMGMGEPAHNLDNVMEAIELLG-TVG-NIGHKNLVFSTV 183 Query: 223 GFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281 G R+ +E + LA+SLH LR L+P E L+DA Y + Sbjct: 184 GDPRAFERLQQERVKPALALSLHTTKAGLRKTLLPRAPNMTPEELVDAGERY-ARATGYP 242 Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341 I +++ +L+G+ND + ++K+L G +N+IPFN G + + + + Sbjct: 243 IQYQWALLEGVNDGQDEIEGIVKLLSGKYGVLNMIPFNAVEGVAFSRPSWERCEAMARTL 302 Query: 342 KRSGYSSPIRTPRGLDILAACGQLKS 367 + G + +R G D+ CGQL++ Sbjct: 303 HQRGILTKLRDSAGQDVDGGCGQLRA 328 >gi|154685028|ref|YP_001420189.1| florfenicol/chloramphenicol resistance like protein [Bacillus amyloliquefaciens FZB42] gi|205829624|sp|A7Z1T2|CFR_BACA2 RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr; AltName: Full=23S rRNA m8A2503 methyltransferase gi|154350879|gb|ABS72958.1| florfenicol/chloramphenicol resistance like protein [Bacillus amyloliquefaciens FZB42] Length = 349 Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 104/343 (30%), Positives = 171/343 (49%), Gaps = 35/343 (10%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKIS-CDGTRKWLLR 91 R +QI ++ I F ++ + + +R LL + F I K+ + K L Sbjct: 22 FRMNQIKNAVFQGRINHFNEITVLPKSLRKLLIEEFGESILNIAPLKVQHSEQVTKVLFE 81 Query: 92 FPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150 I G +IETV + K+ + C+SSQ GC C FC TG L RNLT++E+ Q Sbjct: 82 -----ISGDEKIETVNMKYKAGWESFCISSQCGCHFGCKFCATGDIGLKRNLTSDEMTDQ 136 Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210 +L G I +I MGMGE L N V +L + ++ Sbjct: 137 ILY------------------FHLKGHSIDSISFMGMGEALANVQ-VFDALHVLTNPELF 177 Query: 211 SFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 + S RR+++ST G +P I ++ ++ V L SLH+ N+ R+ L+PIN +YPL ++D Sbjct: 178 ALSPRRLSISTIGIIPGIKKITQDYPQVNLTFSLHSPFNEQRSKLMPINERYPLLEVMDT 237 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL-----KGIPAKINLIPFNPWPGC 324 + ++ +R++ Y+ML G+NDS A ++ +L +G +N+I +NP Sbjct: 238 LDEHIRVT-SRKVYIAYIMLPGVNDSIDHANEVVNLLRSRYKRGNLFHVNIIRYNPTVSS 296 Query: 325 --EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + ++K +V F + +K +G + +R+ G+DI AACGQL Sbjct: 297 PMRFEEVNEKQVVNFYKKLKSAGINVTVRSQFGIDIDAACGQL 339 >gi|313620442|gb|EFR91829.1| ribosomal RNA large subunit methyltransferase N [Listeria innocua FSL S4-378] Length = 180 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 75/169 (44%), Positives = 108/169 (63%), Gaps = 7/169 (4%) Query: 215 RRITLSTSGFVPNIAR-VGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY 273 R IT+STSG P I E+ V LAISLHA +N+LR ++ IN+ Y +E L++A +Y Sbjct: 4 RHITVSTSGLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYSIEKLMEAIHYY 63 Query: 274 PGLSNARRITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPW-PGCEYLCSD 330 +N RRITFEY+MLKG+ND ++AL L +L A +NLIP+NP +Y S Sbjct: 64 VNKTN-RRITFEYIMLKGVNDHKKEALELAALLGEHRHLAYVNLIPYNPVDEHIDYERST 122 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQE 379 ++D++ F + +K++G + IR G DI AACGQL+ SK+I +V +E Sbjct: 123 KEDVLAFYDTLKKNGINCVIRREHGTDIDAACGQLR--SKQIKRVGVRE 169 >gi|313624986|gb|EFR94881.1| ribosomal RNA large subunit methyltransferase N [Listeria innocua FSL J1-023] Length = 179 Score = 130 bits (326), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 75/169 (44%), Positives = 108/169 (63%), Gaps = 7/169 (4%) Query: 215 RRITLSTSGFVPNIAR-VGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY 273 R IT+STSG P I E+ V LAISLHA +N+LR ++ IN+ Y +E L++A +Y Sbjct: 3 RHITVSTSGLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYSIEKLMEAIHYY 62 Query: 274 PGLSNARRITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPW-PGCEYLCSD 330 +N RRITFEY+MLKG+ND ++AL L +L A +NLIP+NP +Y S Sbjct: 63 VNKTN-RRITFEYIMLKGVNDHKKEALELAALLGEHRHLAYVNLIPYNPVDEHIDYERST 121 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQE 379 ++D++ F + +K++G + IR G DI AACGQL+ SK+I +V +E Sbjct: 122 KEDVLAFYDTLKKNGINCVIRREHGTDIDAACGQLR--SKQIKRVGVRE 168 >gi|311106735|ref|YP_003979588.1| methyltransferase [Achromobacter xylosoxidans A8] gi|310761424|gb|ADP16873.1| ribosomal RNA large subunit methyltransferase N [Achromobacter xylosoxidans A8] Length = 351 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 82/266 (30%), Positives = 133/266 (50%), Gaps = 26/266 (9%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 +E+V +P R LCVS+QVGC++ C FC TG L+R +T+ EIL QV+LAR Sbjct: 89 VESVLLP---RDGLCVSTQVGCAVGCRFCMTGKSGLIRQVTSMEILAQVVLARR------ 139 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 R + +V MGMGEP N DNV +++ + + + + ST Sbjct: 140 -------------QRAVKKVVFMGMGEPAHNLDNVLEAIDLLGTEG--NIGHKNLVFSTV 184 Query: 223 GFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281 G + + ++ + LA+SLH +LR L+P + E LI+ Y ++ Sbjct: 185 GDLRVFEALPQQRVKPALALSLHTTKAELRAHLLPRAPRIAPEELIELGERYARDTDY-P 243 Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341 I +++ +LK IND + ++++LKG +N+IPFN G +Y D + I + Sbjct: 244 IQYQWTLLKDINDGDDELDAVVRLLKGKYGVLNVIPFNSLEGDDYQRPDTERIHEIVRSL 303 Query: 342 KRSGYSSPIRTPRGLDILAACGQLKS 367 + G + +R G D+ CGQL++ Sbjct: 304 QSRGVLTKVRNSAGQDVDGGCGQLRA 329 >gi|71906796|ref|YP_284383.1| radical SAM family protein [Dechloromonas aromatica RCB] gi|123733307|sp|Q47GW8|Y1157_DECAR RecName: Full=Probable RNA methyltransferase Daro_1157 gi|71846417|gb|AAZ45913.1| Radical SAM [Dechloromonas aromatica RCB] Length = 357 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 79/268 (29%), Positives = 137/268 (51%), Gaps = 30/268 (11%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 +E+V +P R LC+S+Q+GC++ C+FC TG L+R +++ E++ QV+L R Sbjct: 90 VESVLLP---RDGLCISTQIGCAVGCTFCMTGRDGLLRQVSSAEMVAQVVLGRGR----- 141 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL--SFSKRRITLS 220 RK++ +V MGMGEP N DNV +++ D++G + + S Sbjct: 142 --------------RKVTRVVFMGMGEPSHNMDNVLEAI----DTLGTYGGIGHKNLVFS 183 Query: 221 TSGFVPNIARVGEEIGV-MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279 T G R+ ++ V LA+SLH+ +LR L+P L++ HY + Sbjct: 184 TVGDRRVFDRLPQQRVVPALALSLHSTRAELRAELLPKAPHIDPTELVELAEHY-ARTTG 242 Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSE 339 I +++ ++ GINDS + ++++L G A +NLIP+N +Y + I T ++ Sbjct: 243 YPIQYQWTLIDGINDSIEEMDGIVRLLTGKYAIMNLIPYNATATLDYRRPSLEHITTLTK 302 Query: 340 CIKRSGYSSPIRTPRGLDILAACGQLKS 367 + G + +R G D+ CGQL++ Sbjct: 303 YLHAKGIRTTVRNSAGQDVDGGCGQLRA 330 >gi|224003013|ref|XP_002291178.1| hypothetical protein THAPSDRAFT_34735 [Thalassiosira pseudonana CCMP1335] gi|220972954|gb|EED91285.1| hypothetical protein THAPSDRAFT_34735 [Thalassiosira pseudonana CCMP1335] Length = 284 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 101/302 (33%), Positives = 152/302 (50%), Gaps = 26/302 (8%) Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-SRGTLCVSSQVGCSL 126 F+ + ++ + S DG+ + G V +E+V + SR TLCVSSQVGC++ Sbjct: 1 FATLTSKVQSYRTSKDGSTT---KIAVELQDGHV-VESVLMRHAGSRATLCVSSQVGCAM 56 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLG-DFPGCEDIEGMVIPSVGRKISNIVMM 185 C+FC TGT + NLT+ EIL Q++ A +L D I N+V M Sbjct: 57 GCTFCATGTMGIRGNLTSGEILEQLVHASRILAFDL-----------------IRNVVFM 99 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244 GMGEPL N+ NV + D + + R+T+ST G V I + ++ V LA+SLH Sbjct: 100 GMGEPLNNYANVLAACRAMIDRRLWNLAHNRVTVSTVGVVSRIRDLTRDLPEVNLALSLH 159 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A + +R +VP + P+E LI+A + ++ +R EYVML+G + A L + Sbjct: 160 APNQKMREAIVPAAKGTPIESLIEALDAHM-MAKKKRAMIEYVMLEGDTSTIEAAHQLGQ 218 Query: 305 ILKGIPAKINLIPFNPWPGCEYL-CSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 + +G +NLIP+N + L C ++ + F + G IR G DI ACG Sbjct: 219 LCRGRQLVVNLIPYNKTDVRDKLSCPSEEHMQEFRSIVSSYGSFCSIRRTMGADIAGACG 278 Query: 364 QL 365 QL Sbjct: 279 QL 280 >gi|159479394|ref|XP_001697778.1| hypothetical protein CHLREDRAFT_120230 [Chlamydomonas reinhardtii] gi|158274146|gb|EDO99930.1| predicted protein [Chlamydomonas reinhardtii] Length = 239 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 82/249 (32%), Positives = 122/249 (48%), Gaps = 23/249 (9%) Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC+TG + L+ NL+ +I+ Q I+N+V M Sbjct: 1 MNCQFCFTGRRGLLGNLSTAQIIEQPQPRPQ--------------QSQQAPPPITNLVFM 46 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-------GEEIGVM 238 GMGEPL N V ++ I + GL+ S R+TLST G +P + G V Sbjct: 47 GMGEPLHNPTAVFAAIDILAHRHGLAMSPSRVTLSTVGLLPQLQHFLDSSRGEGGRARVC 106 Query: 239 LAISLHAVSNDLRNILVPINRKY--PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 LA+S+HA +++LR +VP N + P + L R + FEY +L+G+ND P Sbjct: 107 LAVSIHAGTDELRGAIVPSNTRLSLPPAGFSPSNNTIRPLRAGRYVLFEYTLLRGVNDRP 166 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 DA L++ K I NLI FNP+PG Y S + ++ F + + +G +R +G Sbjct: 167 EDAAALLEATKDIECSFNLIMFNPFPGTLYSPSTPERLLAFQKVLWAAGRIVHVRLSKGD 226 Query: 357 DILAACGQL 365 D +AACGQL Sbjct: 227 DGMAACGQL 235 >gi|171059188|ref|YP_001791537.1| ribosomal RNA large subunit methyltransferase N [Leptothrix cholodnii SP-6] gi|205829631|sp|B1Y6D6|Y2507_LEPCP RecName: Full=Probable RNA methyltransferase Lcho_2507 gi|170776633|gb|ACB34772.1| Radical SAM domain protein [Leptothrix cholodnii SP-6] Length = 347 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 81/270 (30%), Positives = 132/270 (48%), Gaps = 34/270 (12%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 +E+V +P R LCVS+QVGC++ C FC TG + L+R + + EI+ QV+LAR Sbjct: 88 VESVLLP---RDGLCVSTQVGCAVGCVFCMTGREGLLRQVGSAEIVAQVVLARR------ 138 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 R + +V MGMGEP N DNV +++ + + + + ST Sbjct: 139 -------------QRLVKKVVFMGMGEPAHNLDNVMEAIDFLGTTG--AIGHKNLVFSTV 183 Query: 223 GFVPNIARVGEEIGV-----MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277 G RV E + + LA+SLH DLR L+P + L++ Y + Sbjct: 184 GD----PRVFERLPLGPVKPALALSLHTTRADLRAQLLPRAPRMDPADLVERAEAY-ARA 238 Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTF 337 + I +++ +L+GIND P + ++++L G A +N+IP+N P Y + Sbjct: 239 TSYPIQYQWTLLEGINDGPDEVEGIVRLLHGKYAVLNMIPYNTVPDLPYTRPSWEAAAAL 298 Query: 338 SECIKRSGYSSPIRTPRGLDILAACGQLKS 367 + + R G + +R G D+ CGQL++ Sbjct: 299 ARTLHRRGILTKLRQSAGQDVEGGCGQLRA 328 >gi|255017664|ref|ZP_05289790.1| hypothetical protein LmonF_07755 [Listeria monocytogenes FSL F2-515] Length = 218 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 80/241 (33%), Positives = 132/241 (54%), Gaps = 26/241 (10%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K S+ G+ L E L G + R +Q+W W+Y + ++ F+ MS++ +E L Sbjct: 1 MEKSSIYGLTWTNLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56 Query: 64 LNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L +F + + ++V E S DGT K+L + + IETV + ++ ++CV++Q Sbjct: 57 LTANFVMNTLEEQVVQE--STDGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQ 109 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC++ C+FC +G K R+LTA EI+ Q++ + L D E+ ++S+ Sbjct: 110 VGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYL-DGRNLEE-----------RVSH 157 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLA 240 +V+MG+GEP N+DNV L + + GL+ R IT+STSG P I E+ V LA Sbjct: 158 VVVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLA 217 Query: 241 I 241 I Sbjct: 218 I 218 >gi|224014863|ref|XP_002297093.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220968212|gb|EED86561.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 319 Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 105/324 (32%), Positives = 155/324 (47%), Gaps = 57/324 (17%) Query: 75 IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP------------EKS-----RGTLC 117 +V S DGT K LLR + G +E+ETV IP EK R T+C Sbjct: 20 LVHTSTSSDGTTKLLLRL----MDG-LEVETVLIPFWADVAQKKRINEKDNSSLGRTTVC 74 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 +SSQVGC C+FC TG +R+LT +EIL Q+ A+ ++ +V+P Sbjct: 75 ISSQVGCRQGCTFCATGRMGKLRSLTTDEILAQLFYAKKVV----------RVVLPP--- 121 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 I+NIV MGMG+ N D VK +++I + FS R+T+ST P + Sbjct: 122 -ITNIVAMGMGDAADNVDAVKGAINIMTRRELFQFSASRVTVSTVAPSPQAFLDFADSKC 180 Query: 238 MLAISLHAVSNDLRNILVPINRKYPL----EMLIDACRHYPGLSNARRITFEYVMLKGIN 293 +LA S+HA ++LR LVP KYP+ + LIDA + R E ++ G+N Sbjct: 181 ILAWSVHATRDELRKQLVPTT-KYPMVELRQGLIDALKQ----RKLRTCMIEVALMDGVN 235 Query: 294 DSPRDALNLIKILKGIPAKI-------NLIPFN-----PWPGCEYLCSDQKDIVTFSECI 341 DS R+A L + L I ++ NLIP+N Y + ++ F + + Sbjct: 236 DSMREAEELAEFLTYITNEVPGSKLLCNLIPYNDIGEGAGGVVAYRKPSMEKVMAFQKRL 295 Query: 342 KRSGYSSPIRTPRGLDILAACGQL 365 + + +R RG + +ACGQL Sbjct: 296 QELSVYAHVRGTRGDEENSACGQL 319 >gi|224825445|ref|ZP_03698550.1| Radical SAM domain protein [Lutiella nitroferrum 2002] gi|224602366|gb|EEG08544.1| Radical SAM domain protein [Lutiella nitroferrum 2002] Length = 354 Score = 126 bits (316), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 86/271 (31%), Positives = 130/271 (47%), Gaps = 36/271 (13%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 +E+V +P R LCVSSQVGC++ C+FC TG L+R L + EI QV LAR + Sbjct: 90 VESVLLP---RDGLCVSSQVGCAVGCTFCMTGKSGLLRQLGSAEIAAQVALARRI----- 141 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS-IASDSMGLSFSKRRITLST 221 R + +V MGMGEP N DNV ++ + SD + + LST Sbjct: 142 --------------RPVKKVVFMGMGEPAHNLDNVLDAIDLLGSDG---HIGHKNLVLST 184 Query: 222 SGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280 G R+ ++ + LA+SLH +LR L+P +Y L+ Y AR Sbjct: 185 VGDPRVFERLPQQHVKPALALSLHTTRAELRAQLLPRAPRYDPAELVALGEDY-----AR 239 Query: 281 R----ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVT 336 R I +++ +L G+ND+ + +++LKG +N+IP+N G Y + I Sbjct: 240 RVGYPIQYQWTLLAGVNDTQEEMDAAVRLLKGKYGVLNIIPYNSVEGDHYQRPSAERIHL 299 Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 + G + +R G DI CGQL++ Sbjct: 300 MKRYLHDHGVLTKVRDSAGQDIDGGCGQLRA 330 >gi|317405650|gb|EFV85949.1| ribosomal RNA large subunit methyltransferase N 1 [Achromobacter xylosoxidans C54] Length = 348 Score = 126 bits (316), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 84/277 (30%), Positives = 135/277 (48%), Gaps = 28/277 (10%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 +E+V +P R LCVS+QVGC++ C FC TG L+R + + EIL QV+LAR Sbjct: 89 VESVLLP---RDGLCVSTQVGCAVGCRFCMTGKSGLIRQVASMEILAQVVLARRQ----- 140 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 R + +V MGMGEP N DNV +++++ + + + ST Sbjct: 141 --------------RAVKKVVFMGMGEPAHNLDNVLEAINLLGTEG--NIGHKNLVFSTV 184 Query: 223 GFVPNI--ARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280 G P + A + + LA+SLH +LR L+P K + L++ Y Sbjct: 185 GD-PRVFEALPRQPVKPALALSLHTTRAELREHLLPRAPKIAPQDLVEMGERY-ARDTGY 242 Query: 281 RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSEC 340 I +++ +LKG+ND + + ++LKG +N+IPFN G +Y + + I Sbjct: 243 PIQYQWTLLKGVNDGDDELDAIPRLLKGKFGVLNVIPFNSLEGDDYQRPETERIREIVRI 302 Query: 341 IKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPR 377 + R G + +R G D+ CGQL++ + +V R Sbjct: 303 LHRRGVLTKVRNSAGQDVDGGCGQLRARAVGAERVVR 339 >gi|332527662|ref|ZP_08403707.1| ribosomal RNA large subunit methyltransferase N [Rubrivivax benzoatilyticus JA2] gi|332112064|gb|EGJ12040.1| ribosomal RNA large subunit methyltransferase N [Rubrivivax benzoatilyticus JA2] Length = 351 Score = 125 bits (315), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 85/286 (29%), Positives = 136/286 (47%), Gaps = 31/286 (10%) Query: 83 DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNL 142 DG + L+ +G +E+V +P R LCVS+QVGC++ C FC TG L+R L Sbjct: 83 DGAERLLV-----GLGDGQTVESVLLP---RDGLCVSTQVGCAVGCVFCMTGRDGLLRQL 134 Query: 143 TAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS 202 + EI+ QV+LAR R +S +V MGMGEP N D V +++ Sbjct: 135 GSAEIVAQVVLARQR-------------------RSVSKVVFMGMGEPSHNLDAVLEAID 175 Query: 203 IASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKY 261 + + G+ + + ST G R+ + LA+SLH +LR L+P K Sbjct: 176 LLGTAGGIGH--KNLVFSTVGDTRAFERLPLGRVKPALALSLHTTKAELRERLLPRAPKI 233 Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPW 321 E +++A Y + I +++ +L GIND + + ++L G A +NLIP+N Sbjct: 234 APEEIVEAGERY-ARATGYPIQYQWTLLDGINDGDDEVDAIARLLAGRYAMMNLIPYNET 292 Query: 322 PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 G + + + + R G + +R G D+ CGQL++ Sbjct: 293 EGDGFRRPPWERAAEMARALGRRGVLTRLRRSAGQDVAGGCGQLRA 338 >gi|330950790|gb|EGH51050.1| hypothetical protein PSYCIT7_05158 [Pseudomonas syringae Cit 7] Length = 158 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 61/124 (49%), Positives = 82/124 (66%), Gaps = 1/124 (0%) Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALN 301 +HA ++ LRN LVP+N+KYPL+ML+++CR Y L R +T EY MLK IND A+ Sbjct: 1 MHAPNDALRNQLVPLNKKYPLKMLLESCRRYMSNLGEKRVLTIEYTMLKDINDKVEHAVE 60 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +I++LK P KINLIPFNP+P Y I F + + ++GY+ +RT RG DI AA Sbjct: 61 MIELLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAA 120 Query: 362 CGQL 365 CGQL Sbjct: 121 CGQL 124 >gi|34497708|ref|NP_901923.1| ribosomal RNA large subunit methyltransferase N [Chromobacterium violaceum ATCC 12472] gi|81655644|sp|Q7NVT9|Y2253_CHRVO RecName: Full=Probable RNA methyltransferase CV_2253 gi|34103564|gb|AAQ59925.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 352 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 83/281 (29%), Positives = 134/281 (47%), Gaps = 36/281 (12%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 +E+V +P R LCVSSQVGC++ C+FC TG L+R L + EI QV LAR + Sbjct: 90 VESVLLP---RDGLCVSSQVGCAVGCTFCMTGKSGLLRQLGSAEIAAQVALARRI----- 141 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS-IASDSMGLSFSKRRITLST 221 R + +V MGMGEP N +NV +++ + +D + + + ST Sbjct: 142 --------------RPVKKVVFMGMGEPAHNMENVLEAIQWLGTDG---NIGHKNLVFST 184 Query: 222 SGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280 G R+ + E+ LA+SLH DLR L+P + L++ Y AR Sbjct: 185 VGDARVFERLPQLEVKPALALSLHTTRADLREQLLPRAPRIAPAELVELGEAY-----AR 239 Query: 281 R----ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVT 336 R I +++ +L G+NDS + ++LKG +N+IP+N G + + + Sbjct: 240 RVGYPIQYQWTLLAGVNDSQEEMDAAARLLKGKYGVLNIIPYNSVEGDRFQRPSSERVQA 299 Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPR 377 + +G + +R G D+ CGQL++ + + R Sbjct: 300 IKRYLHDNGVLTKVRDSAGQDVDGGCGQLRARAAHVIDASR 340 >gi|294944627|ref|XP_002784350.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] gi|239897384|gb|EER16146.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] Length = 308 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 97/299 (32%), Positives = 148/299 (49%), Gaps = 31/299 (10%) Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF-SIIYPE 74 E+ E L K P+ + + ++K +G+ ++ + Q VR L + P Sbjct: 38 EIVECLEKERTPEWQIGLVIQDVFK----KGVSSPSAINRVPQGVRDALQARLGESLSPL 93 Query: 75 IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134 V E+ S D K+LL +R GG +IE V + +S +LCVSSQ+GC+ CSFC TG Sbjct: 94 RVLEQGSADFAHKFLLE--SRQDGG--KIEAVGLDFRSHTSLCVSSQIGCAFNCSFCATG 149 Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194 L R L+ +EI+ QVL+ R + G + ++ MGMGEPL N Sbjct: 150 KLGLKRQLSVDEIVGQVLMFR------------------ATGNVVDSVSFMGMGEPLAN- 190 Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNI 253 + ++S+ +D + S RR+++ST G +P + ++ E +A SLH+ + R Sbjct: 191 PKIFNAISVMTDPQLVGLSTRRMSISTIGIIPGLVKLTELHPQANVAYSLHSPFPEEREK 250 Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK-ILKGIPA 311 ++PI R YP + D + RRI Y++LKGINDS R A K LK PA Sbjct: 251 IMPIQRVYPFAKVFDVLDDRIKRT-GRRIWISYLLLKGINDSERYATYEAKNALKRKPA 308 >gi|205829718|sp|Q5P119|Y2870_AZOSE RecName: Full=Probable RNA methyltransferase AZOSEA28700 Length = 354 Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 78/266 (29%), Positives = 129/266 (48%), Gaps = 26/266 (9%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 +E+V +P R LCVS+QVGC++ C+FC TG L+R L + EI+ QV+LARS Sbjct: 87 VESVLLP---RDGLCVSTQVGCAVGCAFCMTGRDGLLRQLGSAEIVAQVVLARSR----- 138 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 R + +V MGMGEP N DNV +++++ G+ + + ST Sbjct: 139 --------------RAVRKVVFMGMGEPAHNLDNVLEAIALLGTEGGIGH--KNLVFSTV 182 Query: 223 GFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281 G R+ + + LA+SLH LR L+P + L++ Y + Sbjct: 183 GDRRVFERLPQGSVKPALALSLHTTRPALRTKLMPRAPRLDPAELVELGETY-ARATGYP 241 Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341 I +++ +L G+ND + ++++L G A +N IP+N G + + + + Sbjct: 242 IQYQWTLLAGVNDDDEELDGIVRLLAGKYAVMNFIPYNSVAGAGFARPSWEHAAAMARYL 301 Query: 342 KRSGYSSPIRTPRGLDILAACGQLKS 367 R G + +R G D+ CGQL++ Sbjct: 302 HRRGILTKLRHSAGQDVDGGCGQLRA 327 >gi|239820673|ref|YP_002947858.1| Radical SAM domain protein [Variovorax paradoxus S110] gi|239805526|gb|ACS22592.1| Radical SAM domain protein [Variovorax paradoxus S110] Length = 351 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 81/275 (29%), Positives = 132/275 (48%), Gaps = 26/275 (9%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 +E+V +P R LCVSSQVGC++ C FC TG L+R + + EI+ QV LAR Sbjct: 88 VESVLLP---RDGLCVSSQVGCAVGCRFCMTGRDGLLRQVGSAEIIAQVALAR------- 137 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 + R + +V MGMGEP N DNV +++ + ++G + + + ST Sbjct: 138 ------------MRRPVRKVVFMGMGEPAHNLDNVMEAIELLG-TVG-NIGHKNLVFSTV 183 Query: 223 GFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281 G R+ + + LA+SLH LR L+P E L+ A Y + Sbjct: 184 GDPRAFERLQQARVRPALALSLHTTKAGLRKKLLPRAPNMTPEELVGAGERY-ARATGYP 242 Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341 I +++ +L G+ND P + ++++L G +N+IPFN G + + + + Sbjct: 243 IQYQWTLLDGVNDGPEEIDGIVRLLSGKFGVLNMIPFNAVEGVAFSRPSLERCEQMARTL 302 Query: 342 KRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVP 376 + G + +R G D+ CGQL++ + VP Sbjct: 303 HQRGILTKLRHSAGQDVDGGCGQLRARAAEARVVP 337 >gi|217969807|ref|YP_002355041.1| ribosomal RNA large subunit methyltransferase N [Thauera sp. MZ1T] gi|217507134|gb|ACK54145.1| Radical SAM domain protein [Thauera sp. MZ1T] Length = 347 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 84/277 (30%), Positives = 137/277 (49%), Gaps = 32/277 (11%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 +E+V +P R LCVS+QVGC++ C FC TG L+R L + EI+ QV LAR L Sbjct: 87 VESVLLP---RDGLCVSTQVGCAVGCVFCMTGKDGLLRQLDSGEIVAQVALARRL----- 138 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 R++ +V MGMGEP N D V +++ + L + + LST Sbjct: 139 --------------RRVHKVVFMGMGEPAHNLDAVIEAIELLGTEGALPH--KNLVLSTV 182 Query: 223 GFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVP-INRKYPLEM--LIDACRHYPGLSN 278 G + R+ + + LA+SLH+ LR L+P R P E+ L +A G Sbjct: 183 GDLRVFERLPQMRVKPALALSLHSTRAALRAALLPRAPRIDPAELVELGEAWARASGYP- 241 Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFS 338 I +++ +++G+ND + ++++L G A +N+IPFN G +Y + + Sbjct: 242 ---IQYQWTLIEGVNDGEDELEGIVRLLAGKYAVMNMIPFNRVDGLDYRRPAAESAAEIA 298 Query: 339 ECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKV 375 + R+G + +R G D+ CGQL++ ++ V Sbjct: 299 RRLHRAGILTKLRQSAGQDVDGGCGQLRAREAKLAFV 335 >gi|56478307|ref|YP_159896.1| ribosomal RNA large subunit methyltransferase N [Aromatoleum aromaticum EbN1] gi|56314350|emb|CAI08995.1| predicted Fe-S-cluster redox enzyme,radical SAM family [Aromatoleum aromaticum EbN1] Length = 397 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 78/266 (29%), Positives = 129/266 (48%), Gaps = 26/266 (9%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 +E+V +P R LCVS+QVGC++ C+FC TG L+R L + EI+ QV+LARS Sbjct: 130 VESVLLP---RDGLCVSTQVGCAVGCAFCMTGRDGLLRQLGSAEIVAQVVLARSR----- 181 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 R + +V MGMGEP N DNV +++++ G+ + + ST Sbjct: 182 --------------RAVRKVVFMGMGEPAHNLDNVLEAIALLGTEGGIGH--KNLVFSTV 225 Query: 223 GFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281 G R+ + + LA+SLH LR L+P + L++ Y + Sbjct: 226 GDRRVFERLPQGSVKPALALSLHTTRPALRTKLMPRAPRLDPAELVELGETY-ARATGYP 284 Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341 I +++ +L G+ND + ++++L G A +N IP+N G + + + + Sbjct: 285 IQYQWTLLAGVNDDDEELDGIVRLLAGKYAVMNFIPYNSVAGAGFARPSWEHAAAMARYL 344 Query: 342 KRSGYSSPIRTPRGLDILAACGQLKS 367 R G + +R G D+ CGQL++ Sbjct: 345 HRRGILTKLRHSAGQDVDGGCGQLRA 370 >gi|124268797|ref|YP_001022801.1| ribosomal RNA large subunit methyltransferase N [Methylibium petroleiphilum PM1] gi|205829646|sp|A2SLX7|Y3613_METPP RecName: Full=Probable RNA methyltransferase Mpe_A3613 gi|124261572|gb|ABM96566.1| Fe-S-cluster redox enzyme,radical SAM family [Methylibium petroleiphilum PM1] Length = 352 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 78/266 (29%), Positives = 129/266 (48%), Gaps = 26/266 (9%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 +E+V +P R LCVS+QVGC++ C FC TG L+R L + EI+ QV LAR Sbjct: 87 VESVLLP---RDGLCVSTQVGCAVGCVFCMTGQGGLLRQLGSAEIVAQVALARGH----- 138 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 R + +V MGMGEP N DNV +++ + + G+ + + ST Sbjct: 139 --------------RAVKKVVFMGMGEPAHNLDNVLEAIELLGTAGGIGH--KNLVFSTV 182 Query: 223 GFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281 G R+ + + LA+SLH +LR L+P + E L+ Y + Sbjct: 183 GDERVFERLPQGAVKPALALSLHTTKPELRAQLLPRAPRIAPEDLVAHGERY-ARATGYP 241 Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341 + +++ ++ G+ND + ++++L G A +NLIP+N G + + V + + Sbjct: 242 VQYQWTLIDGVNDGDDELDGIVRLLAGRYAVMNLIPYNTVDGLAFQRPAWERAVAMAGAL 301 Query: 342 KRSGYSSPIRTPRGLDILAACGQLKS 367 R G + +R G D+ CGQL++ Sbjct: 302 HRRGVLTKLRRSAGQDVEGGCGQLRA 327 >gi|255632735|gb|ACU16719.1| unknown [Glycine max] Length = 245 Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 84/245 (34%), Positives = 129/245 (52%), Gaps = 28/245 (11%) Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC TG+ NL++ EI +E +V S +I N+V M Sbjct: 1 MGCNFCATGSMGFKNNLSSGEI-------------------VEQLVHASTFSQIRNVVFM 41 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSF--SKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242 GMGEPL N+ V +++ I + GL F S +RIT+ST G + I ++ +++ G+ LA+S Sbjct: 42 GMGEPLNNYSAVVEAVRIMT---GLPFQLSSKRITISTVGIIHAINKLHDDLPGLNLAVS 98 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA + D+R ++P R +PL L+D+ + Y S ++I EY+ML G+ND A L Sbjct: 99 LHAPAQDIRCQIMPAARAFPLGKLMDSLQVYQRKS-LQKIFIEYIMLDGVNDEEHHAHLL 157 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYS--SPIRTPRGLDILA 360 K+L+ +NLIPFN + V+ + I R Y+ + +R G DI Sbjct: 158 GKLLETFQVVVNLIPFNSIGTLSQFKPTSEQKVSNFQKILRGTYNIRTTVRKQMGRDISG 217 Query: 361 ACGQL 365 ACGQL Sbjct: 218 ACGQL 222 >gi|323449897|gb|EGB05782.1| hypothetical protein AURANDRAFT_30404 [Aureococcus anophagefferens] Length = 315 Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 101/324 (31%), Positives = 148/324 (45%), Gaps = 52/324 (16%) Query: 76 VDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIP--------EKSRGTLCVSSQVGCSL 126 ++E +S DGT K L+R + ++E V IP +++ T+CVSSQVGC Sbjct: 14 IEESVSAPDGTLKLLVR-----LADGADVEAVVIPPSGGPAKNARAKSTVCVSSQVGCRQ 68 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC TG L R+L+ EIL Q+ LA + + +P N+V MG Sbjct: 69 ACAFCATGKMGLARSLSGVEILAQIALATAAA-------RAARLPVP------RNVVFMG 115 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAISLH 244 MGEP N V+ +++ D ++ + R+T+ST G P + G +A SLH Sbjct: 116 MGEPGDNVGAVRDAVAALVDGARFAYGRDRVTVSTVGPAPGVFAELFGYADAPAVAWSLH 175 Query: 245 AVSNDLRNILVPINRKYPLEM---LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 + +LR LVP + E+ L+ A P R+ E V++ G+ND P DA Sbjct: 176 SADEELRRTLVPTAKHSAAELRDGLVRALEARP--EKRRKAVLEVVLIAGVNDGPGDADA 233 Query: 302 LIKILKGIPAK------------INLIPFNPW----PGCEYLCSDQKDIVTFSECIKRSG 345 + +K I A +NLIP+N P E D + F ++ G Sbjct: 234 IAAFVKPIEAACTGTAGGRTGVLVNLIPYNANESVDPSFEPPAPDA--VQAFQARLRDRG 291 Query: 346 YSSPIRTPRGLDILAACGQLKSLS 369 S R RG D AACGQL + S Sbjct: 292 VWSSKRAERGADDAAACGQLATAS 315 >gi|226503103|ref|NP_001141039.1| hypothetical protein LOC100273119 [Zea mays] gi|194702344|gb|ACF85256.1| unknown [Zea mays] Length = 194 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 68/153 (44%), Positives = 93/153 (60%), Gaps = 15/153 (9%) Query: 103 IETVYIP-EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF 161 IETV IP + R T+CVSSQVGC++ C FC+TG L ++L+ EI+ Q + AR L D Sbjct: 19 IETVIIPCARGRTTICVSSQVGCAMNCQFCFTGRMGLRKHLSTAEIVEQAVFARRLFSDE 78 Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221 G I+N+V MGMGEP N DNV K+ +I D GL FS R++T+ST Sbjct: 79 LG--------------SINNVVFMGMGEPFHNIDNVIKASAIMVDEQGLHFSPRKVTVST 124 Query: 222 SGFVPNIARVGEEIGVMLAISLHAVSNDLRNIL 254 SG VP + R +E LA+SL+A ++++ IL Sbjct: 125 SGLVPQLKRFLQESNCSLAVSLNATTDEVVIIL 157 >gi|317488030|ref|ZP_07946611.1| hypothetical protein HMPREF1023_00309 [Eggerthella sp. 1_3_56FAA] gi|316912860|gb|EFV34388.1| hypothetical protein HMPREF1023_00309 [Eggerthella sp. 1_3_56FAA] Length = 195 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 66/190 (34%), Positives = 105/190 (55%), Gaps = 2/190 (1%) Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234 + +K++ IV MGMGEPL N+DN+ ++ I D GL+F IT+ST G V + ++ EE Sbjct: 7 IRQKVNRIVFMGMGEPLFNYDNLIAAIHILRDRNGLNFPTDGITVSTVGPVNQLKKLREE 66 Query: 235 -IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 + + L ISLHA + RN ++P Y +E ++ Y N R++ F Y++L GIN Sbjct: 67 HLKIQLTISLHAATQAARNCIIPHMHMYAIEDVVKQALSYSQRHN-RKVVFAYLLLPGIN 125 Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353 D D L K KG IN++ +NP + ++++V F ++++G +R Sbjct: 126 DRSSDIRQLAKWFKGKNVMINVLQYNPTSNSKIRAPQKQEMVAFKHQLEQTGLEVTMRVS 185 Query: 354 RGLDILAACG 363 G +I AACG Sbjct: 186 HGREIKAACG 195 >gi|300858724|ref|YP_003783707.1| hypothetical protein cpfrc_01307 [Corynebacterium pseudotuberculosis FRC41] gi|300686178|gb|ADK29100.1| hypothetical protein cpfrc_01307 [Corynebacterium pseudotuberculosis FRC41] Length = 203 Score = 122 bits (306), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 70/188 (37%), Positives = 103/188 (54%), Gaps = 7/188 (3%) Query: 186 GMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 G GEPL N+ V ++ + + G S+R +T+ST G P I ++ EE + V LA+S Sbjct: 14 GWGEPLANYKRVVSAVRQITSPVPEGFGISQRNVTVSTVGLAPAIRKLAEEDLSVTLAVS 73 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LH ++LRN LVP N ++ + ++DA R+Y S RR++ EY +++ +ND P A L Sbjct: 74 LHTPDDELRNTLVPTNNRWEVAEVLDAARYYADRS-GRRVSIEYALIRDVNDQPWRADML 132 Query: 303 IKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 K L G +NLIP NP PG E+ S + F + G +R RG +I Sbjct: 133 GKKLHKALGSLVHVNLIPLNPTPGSEWDASPKDRQHEFVRRVIAQGVPCTVRDTRGQEIA 192 Query: 360 AACGQLKS 367 AACGQL + Sbjct: 193 AACGQLAA 200 >gi|313610609|gb|EFR85705.1| ribosomal RNA large subunit methyltransferase N [Listeria monocytogenes FSL F2-208] Length = 171 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 71/163 (43%), Positives = 103/163 (63%), Gaps = 7/163 (4%) Query: 221 TSGFVPNIAR-VGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279 TSG P I E+ V LAISLHA +N+LR ++ IN+ Y +E L++A +Y +N Sbjct: 1 TSGLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTN- 59 Query: 280 RRITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPW-PGCEYLCSDQKDIVT 336 RRITFEY+MLKG+ND ++AL L +L A +NLIP+NP +Y S ++D++ Sbjct: 60 RRITFEYIMLKGVNDHKKEALELAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLA 119 Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQE 379 F + +K++G + IR G DI AACGQL+ SK+I +V +E Sbjct: 120 FYDTLKKNGINCVIRREHGTDIDAACGQLR--SKQIKRVGVRE 160 >gi|255573175|ref|XP_002527517.1| catalytic, putative [Ricinus communis] gi|223533157|gb|EEF34915.1| catalytic, putative [Ricinus communis] Length = 337 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 73/202 (36%), Positives = 112/202 (55%), Gaps = 22/202 (10%) Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168 P R TLC+SSQVGC + C FC TG+ NL++ EI+ Q++ A L Sbjct: 152 PGGPRSTLCISSQVGCKMGCKFCATGSMGFKNNLSSGEIVEQLVHATQL----------- 200 Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228 +I N+V MGMGEPL N+ + +++ + S S ++IT+ST G + I Sbjct: 201 --------SQIRNVVFMGMGEPLNNYTALVEAIRVMLGS-PFQLSPKKITVSTVGVIHAI 251 Query: 229 ARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 ++ ++ G+ LA+SLHA D+R ++P R +PLE L+DA + Y S ++I EY+ Sbjct: 252 NKLQRDLPGLNLAVSLHAPVQDIRCHIMPAARAFPLEKLMDALQVYQKNSQ-QKIFIEYI 310 Query: 288 MLKGINDSPRDALNLIKILKGI 309 ML G+ND + A L K+L+ Sbjct: 311 MLDGVNDEEQHAHQLGKLLEAF 332 >gi|67592602|ref|XP_665654.1| hypothetical protein [Cryptosporidium hominis TU502] gi|54656439|gb|EAL35423.1| hypothetical protein Chro.40137 [Cryptosporidium hominis] Length = 600 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 107/385 (27%), Positives = 165/385 (42%), Gaps = 102/385 (26%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +KK S+ + L +AL G+ R+ IW+ I +GI+D + DI + + Sbjct: 9 IKKHSIFDY--KSLTKALDDAGVK----RIHAYTIWRNIVQKGIKDMSEIKDIPKAAYKI 62 Query: 64 LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYI-------------- 108 +N+ FSI+ ++++ + S DG T K + R + EIE V + Sbjct: 63 INEQFSILNIQLINSQTSKDGNTTKIIFR-----LQDSHEIEAVIMRYGDDQVNENTNIC 117 Query: 109 -------------------PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149 + R ++CVSSQ+GC + C FC TG+ L +L + EIL Sbjct: 118 NSNSNNNNNDSNQQEISTSSKYKRISICVSSQIGCRMGCMFCATGSMGLRGSLLSGEILQ 177 Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209 Q+ +++L + + N+V MGMGEPL N+D V S+ + D Sbjct: 178 QLYYIKNILKE-----------------PVRNVVFMGMGEPLENYDEVIDSIRLMVDPRI 220 Query: 210 LSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPL----- 263 S S I +ST G NI + +++ GV L +SLHA + LR +VPI R Y + Sbjct: 221 FSLSSGHILVSTVGIPSNIVNLADDLPGVGLCLSLHAPNQSLRERIVPIARLYKISDLMR 280 Query: 264 -------EMLIDACRHYPGLSNARR-------------------------ITFEYVMLKG 291 + +I+ C Y L + R I EY MLK Sbjct: 281 SLDIFIFKTIINKC--YKNLLDDRNKDHIKDNMNYDDILISNKLLYGHKMIIIEYTMLKD 338 Query: 292 INDSPRDALNLIKILKGIPAKINLI 316 +NDS A+ L +LK P N+I Sbjct: 339 VNDSEDHAVELANLLKNTPISKNII 363 >gi|194693462|gb|ACF80815.1| unknown [Zea mays] Length = 206 Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/193 (37%), Positives = 109/193 (56%), Gaps = 8/193 (4%) Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV--GEEIGVMLAIS 242 MGMGEP+ N +V ++ + L +R +T+ST G VPN ++ ++ LA+S Sbjct: 1 MGMGEPMMNLKSVLEAHQCFNKE--LKIGQRMMTISTVG-VPNTIKMLASHKLQSTLAVS 57 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA + LR +VP + YPL L+D C+ Y L RR++FEY +L GIND A L Sbjct: 58 LHAPNQKLRETIVPSAKSYPLGALMDDCKSY-FLETGRRVSFEYTLLAGINDEKEHAEEL 116 Query: 303 IKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 ++L+ G +NLIP+NP G EY +K + F + ++ + +R RGLD A Sbjct: 117 AELLRMCGGGYHVNLIPYNPIEGSEYKRPYRKVVQAFVDALEARKITVSVRRTRGLDANA 176 Query: 361 ACGQLKSLSKRIP 373 ACGQL++ ++ P Sbjct: 177 ACGQLRNEFQKNP 189 >gi|187478042|ref|YP_786066.1| ribosomal RNA large subunit methyltransferase N [Bordetella avium 197N] gi|123752381|sp|Q2L1Z5|Y1540_BORA1 RecName: Full=Probable RNA methyltransferase BAV1540 gi|115422628|emb|CAJ49153.1| radical SAM protein [Bordetella avium 197N] Length = 351 Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 82/272 (30%), Positives = 132/272 (48%), Gaps = 38/272 (13%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 +E+V +P R LCVS+QVGC++ C FC TG L+R +T+ EIL QV+LAR Sbjct: 89 VESVLLP---RDGLCVSTQVGCAVGCRFCMTGKSGLIRQVTSMEILAQVVLARRR----- 140 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 R + +V MGMGEP N +NV +++++ + + + ST Sbjct: 141 --------------RAVKKVVFMGMGEPAHNLENVLEAINLLGTEG--NIGHKNLVFSTV 184 Query: 223 GFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLID----ACRH--YPG 275 G + ++ + LA+SLH +LR L+P + L++ RH YP Sbjct: 185 GDRRVFEALPQQRVKPALALSLHTTKAELRARLLPRAPSIAPDELVELGERYARHIGYP- 243 Query: 276 LSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIV 335 I +++ +LKG+ND + ++++LKG +N+IPFN G +Y D + I Sbjct: 244 ------IQYQWTLLKGVNDGNDELDAVLRLLKGKYGVLNVIPFNSLEGDDYQRPDLERIR 297 Query: 336 TFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 + G +R G D+ CGQL++ Sbjct: 298 EIVRYVHSRGVLVKVRNSAGQDVDGGCGQLRA 329 >gi|289571070|ref|ZP_06451297.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289544824|gb|EFD48472.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] Length = 189 Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 70/188 (37%), Positives = 106/188 (56%), Gaps = 7/188 (3%) Query: 187 MGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243 MGEPL N+ V ++ A G S R +T+ST G P I + + +GV LA+SL Sbjct: 1 MGEPLANYARVLAAVQRITARPPSGFGISARAVTVSTVGLAPAIRNLADARLGVTLALSL 60 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA + LR+ LVP+N ++ + +DA R+Y ++ RR++ EY +++ +ND P A L Sbjct: 61 HAPDDGLRDTLVPVNNRWRISEALDAARYYANVTG-RRVSIEYALIRDVNDQPWRADLLG 119 Query: 304 KILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 K L G A +NLIP NP PG ++ S + F + ++ G S +R RG +I A Sbjct: 120 KRLHRVLGPLAHVNLIPLNPTPGSDWDASPKPVEREFVKRVRAKGVSCTVRDTRGREISA 179 Query: 361 ACGQLKSL 368 ACGQL ++ Sbjct: 180 ACGQLAAV 187 >gi|291614657|ref|YP_003524814.1| radical SAM domain protein [Sideroxydans lithotrophicus ES-1] gi|291584769|gb|ADE12427.1| Radical SAM domain protein [Sideroxydans lithotrophicus ES-1] Length = 412 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 86/316 (27%), Positives = 138/316 (43%), Gaps = 72/316 (22%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 +E+V +P RG LCVS+QVGC++ C FC +G L+R L + EI+ QV+LAR Sbjct: 106 VESVLLP---RGGLCVSTQVGCAVGCVFCMSGRDGLLRQLGSAEIVAQVVLARKR----- 157 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 R +S +V MGMGEP N DNV +++ + + + + LST Sbjct: 158 --------------RAVSKVVFMGMGEPAHNLDNVLEAIELLGTQG--NIGHKNLVLSTV 201 Query: 223 GFV---------------------------------------PNIARVGEE--------I 235 G + P R G + Sbjct: 202 GDLRVFERLMEGLTHKPSPQPSGGTTDHSTRPSENNGQVAGHPACGRGGNRERQSSIAAV 261 Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 LA+SLH LR L+P + P+E L++ Y + + +++ +++G+NDS Sbjct: 262 KPALALSLHTTDEVLRTRLLPQAPRIPVEELVERAEIY-ARATGYPVQYQWTLIEGVNDS 320 Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 + ++++LKG A +N IPFN G Y + I + + G S +R G Sbjct: 321 DAELARIVQLLKGKYAIMNFIPFNEVDGLTYRRPSGERIAAMAYALNGQGIYSRVRDSAG 380 Query: 356 LDILAACGQLKSLSKR 371 +I ACGQL++ + + Sbjct: 381 QEIEGACGQLRARAAK 396 >gi|325849079|ref|ZP_08170571.1| putative 23S rRNA m2A2503 methyltransferase [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480324|gb|EGC83387.1| putative 23S rRNA m2A2503 methyltransferase [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 223 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 74/192 (38%), Positives = 113/192 (58%), Gaps = 6/192 (3%) Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI---ARVGEEI 235 ISNIV+MG+GEPL NF N++K + I +D G + S R IT+ST G V I A +G +I Sbjct: 31 ISNIVVMGIGEPLDNFSNIEKFIKIITDQKGRNLSHRSITVSTVGLVDKIYDLANLGYDI 90 Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 LA+SLH ++ R +P +KY ++ +I AC +Y + RR+++EYV++ G+N+ Sbjct: 91 N--LAVSLHYAFDEKRMAYMPSGKKYKIKDIIKACDYYLEKT-KRRVSYEYVVIDGVNNL 147 Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 D L + KG INLIP NP +Y + + F + + + G ++ IR G Sbjct: 148 REDIDQLENLFKGKNIHINLIPLNPIEEFKYSKTKNNVMDQFQQKLTKKGLNATIRRSMG 207 Query: 356 LDILAACGQLKS 367 DI A+CGQL++ Sbjct: 208 SDIDASCGQLRN 219 >gi|237840113|ref|XP_002369354.1| GPI transamidase 8, putative [Toxoplasma gondii ME49] gi|211967018|gb|EEB02214.1| GPI transamidase 8, putative [Toxoplasma gondii ME49] gi|221503977|gb|EEE29654.1| GPI transamidase, putative [Toxoplasma gondii VEG] Length = 270 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 84/265 (31%), Positives = 126/265 (47%), Gaps = 35/265 (13%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 GC+ CSFC G +R L+A+EI QVL Sbjct: 2 NFAARGAAGCAFNCSFCSVGKSGFLRQLSADEITDQVLF------------------FLR 43 Query: 175 VGRKISNIVMMGMGEPLCN---FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231 G KI ++ MGMGEPL N FD ++ I +D + +FS R++ +ST G +P I ++ Sbjct: 44 QGIKIDSVSFMGMGEPLANPKMFDAIR----ILTDPLLFNFSARKLAVSTLGVLPGIKKL 99 Query: 232 GEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 EE V LA SLH+ + RNILVP NR +P+E + D RRI Y+++K Sbjct: 100 TEEHPQVNLAFSLHSPFPEERNILVPANRMFPMEEVFDLLDERLA-KTGRRIWISYILIK 158 Query: 291 GINDSPRDALNLIKILKG--IPAK----INLIPFNPWPGCEYLCS--DQKDIVTFSECIK 342 G N++ A L +L+ P + +N+IP+N G E ++ F++ ++ Sbjct: 159 GRNNTEEHAKALAALLRERRRPTRHLYHVNVIPYNTAQGVESSMQPPSAAEVNHFTDLLR 218 Query: 343 RSGYSSPIRTPRGLDILAACGQLKS 367 + S R G I AACGQ+ + Sbjct: 219 KLHLSVSRRHTIGSAIDAACGQMHA 243 >gi|148662723|ref|YP_001284246.1| hypothetical protein MRA_2904 [Mycobacterium tuberculosis H37Ra] gi|148506875|gb|ABQ74684.1| hypothetical protein MRA_2904 [Mycobacterium tuberculosis H37Ra] Length = 195 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 69/188 (36%), Positives = 105/188 (55%), Gaps = 7/188 (3%) Query: 187 MGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243 GEPL N+ V ++ A G S R +T+ST G P I + + +GV LA+SL Sbjct: 7 WGEPLANYARVLAAVQRITARPPSGFGISARAVTVSTVGLAPAIRNLADARLGVTLALSL 66 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA + LR+ LVP+N ++ + +DA R+Y ++ RR++ EY +++ +ND P A L Sbjct: 67 HAPDDGLRDTLVPVNNRWRISEALDAARYYANVTG-RRVSIEYALIRDVNDQPWRADLLG 125 Query: 304 KILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 K L G A +NLIP NP PG ++ S + F + ++ G S +R RG +I A Sbjct: 126 KRLHRVLGPLAHVNLIPLNPTPGSDWDASPKPVEREFVKRVRAKGVSCTVRDTRGREISA 185 Query: 361 ACGQLKSL 368 ACGQL ++ Sbjct: 186 ACGQLAAV 193 >gi|221483043|gb|EEE21367.1| GPI transamidase, putative [Toxoplasma gondii GT1] Length = 270 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 84/258 (32%), Positives = 126/258 (48%), Gaps = 35/258 (13%) Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC+ CSFC G +R L+A+EI QVL G KI + Sbjct: 9 AGCAFNCSFCSVGKSGFLRQLSADEITDQVLF------------------FLRQGIKIDS 50 Query: 182 IVMMGMGEPLCN---FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GV 237 + MGMGEPL N FD ++ I +D + +FS R++ +ST G +P I ++ EE V Sbjct: 51 VSFMGMGEPLANPKMFDAIR----ILTDPLLFNFSARKLAVSTLGVLPGIKKLTEEHPQV 106 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 LA SLH+ + RNILVP NR +P+E + D RRI Y+++KG N++ Sbjct: 107 NLAFSLHSPFPEERNILVPANRMFPMEEVFDLLDERLA-KTGRRIWISYILIKGRNNTEE 165 Query: 298 DALNLIKILKG--IPAK----INLIPFNPWPGCEYLCS--DQKDIVTFSECIKRSGYSSP 349 A L +L+ P + +N+IP+N G E ++ F++ +++ S Sbjct: 166 HAKALAALLRERRRPTRHLYHVNVIPYNTAQGVESSMQPPSATEVNHFTDLLRKLHLSVS 225 Query: 350 IRTPRGLDILAACGQLKS 367 R G I AACGQ+ + Sbjct: 226 RRHTIGSAIDAACGQMHA 243 >gi|66357070|ref|XP_625713.1| conserved protein with transmembrane region at C-terminus [Cryptosporidium parvum Iowa II] gi|46226740|gb|EAK87719.1| conserved protein with transmembrane region at C-terminus [Cryptosporidium parvum Iowa II] Length = 602 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 105/385 (27%), Positives = 165/385 (42%), Gaps = 102/385 (26%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +KK S+ + L +AL G+ R+ IW+ I +GI++ + DI + + Sbjct: 12 IKKHSIFDY--KSLTKALDDAGVK----RIHAYTIWRNIVQKGIKNMSEIKDIPKAAYKI 65 Query: 64 LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYI-------------- 108 +N+ FSI+ ++++ + S DG T K + R + EIE V + Sbjct: 66 INEQFSILNIQLINSQTSKDGNTTKIIFR-----LQDSHEIEAVIMRYGDDQVNENTNIC 120 Query: 109 -------------------PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149 + R ++CVSSQ+GC + C FC TG+ L +L + EIL Sbjct: 121 NSNSNNKNNDSNQQEISTSSKYKRISICVSSQIGCRMGCMFCATGSMGLRGSLLSGEILQ 180 Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209 Q+ +++L + + N+V MGMGEPL N+D V S+ + D Sbjct: 181 QLYYIKNILKE-----------------PVRNVVFMGMGEPLENYDEVIDSIRLMVDPRI 223 Query: 210 LSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPL----- 263 S S I +ST G NI + +++ GV L +SLHA + LR ++PI R Y + Sbjct: 224 FSLSSGHILVSTVGIPSNIINLADDLPGVGLCLSLHAPNQSLRERIIPIARLYKISDLMR 283 Query: 264 -------EMLIDACRHYPGLSNARR-------------------------ITFEYVMLKG 291 + +I+ C Y L + R I EY MLK Sbjct: 284 SLDIFIFKTIINKC--YKNLLDDRNKDHIKDNMNYDDILISNKLLYGHKMIIIEYTMLKD 341 Query: 292 INDSPRDALNLIKILKGIPAKINLI 316 +NDS A+ L +LK P N+I Sbjct: 342 VNDSEDHAVELANLLKNTPISKNII 366 >gi|15610016|ref|NP_217395.1| hypothetical protein Rv2879c [Mycobacterium tuberculosis H37Rv] gi|1403399|emb|CAA98355.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv] Length = 189 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 69/187 (36%), Positives = 105/187 (56%), Gaps = 7/187 (3%) Query: 188 GEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244 GEPL N+ V ++ A G S R +T+ST G P I + + +GV LA+SLH Sbjct: 2 GEPLANYARVLAAVQRITARPPSGFGISARAVTVSTVGLAPAIRNLADARLGVTLALSLH 61 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A + LR+ LVP+N ++ + +DA R+Y ++ RR++ EY +++ +ND P A L K Sbjct: 62 APDDGLRDTLVPVNNRWRISEALDAARYYANVTG-RRVSIEYALIRDVNDQPWRADLLGK 120 Query: 305 ILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L G A +NLIP NP PG ++ S + F + ++ G S +R RG +I AA Sbjct: 121 RLHRVLGPLAHVNLIPLNPTPGSDWDASPKPVEREFVKRVRAKGVSCTVRDTRGREISAA 180 Query: 362 CGQLKSL 368 CGQL ++ Sbjct: 181 CGQLAAV 187 >gi|77415028|ref|ZP_00791102.1| Unknown [Streptococcus agalactiae 515] gi|77158922|gb|EAO70159.1| Unknown [Streptococcus agalactiae 515] Length = 168 Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 65/155 (41%), Positives = 97/155 (62%), Gaps = 5/155 (3%) Query: 217 ITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275 IT+STSG I E + V L++SLHA +N+LR+ ++ INR +PLE L A +Y Sbjct: 1 ITVSTSGLAHKIREFANEGVQVNLSVSLHAPNNELRSSIMRINRSFPLEKLFAAIEYYIE 60 Query: 276 LSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNP-WPGCEYLCSDQK 332 +N RR+TFEY+ML G+ND+P +A L + K I + +NLIP+NP +Y S ++ Sbjct: 61 TTN-RRVTFEYIMLNGVNDTPENAQELADLTKKIRKLSYVNLIPYNPVSEHDQYSRSPKE 119 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 + F + +K++G + +R G DI AACGQL+S Sbjct: 120 RVEAFYDVLKKNGVNCVVRQEHGTDIDAACGQLRS 154 >gi|71029582|ref|XP_764434.1| hypothetical protein [Theileria parva strain Muguga] gi|68351388|gb|EAN32151.1| hypothetical protein, conserved [Theileria parva] Length = 235 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 85/229 (37%), Positives = 117/229 (51%), Gaps = 28/229 (12%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEIVDEKISCDGTRKWL 89 + R SQI+ IY +F M + + +R L+ +F S++ V E SCD +K L Sbjct: 21 KYRLSQIFNSIYRNKTSNFLSMYHLPKILRDGLHDNFNGSLLSLTPVSES-SCDRAKKVL 79 Query: 90 LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149 + IE V + + +LC+SSQVGCS CSFC TG L RNLT +EI Sbjct: 80 FQNQDGS-----RIEAVLLHFNTHKSLCISSQVGCSFACSFCATGKIGLKRNLTMDEITD 134 Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209 QVL + L G KI +I MGMGEPL N NV +++S+ +D Sbjct: 135 QVLYFQQL------------------GHKIDSISFMGMGEPLSN-PNVFRAISVLTDKRY 175 Query: 210 LSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPI 257 S RRI +ST G +P I ++ +E V LA SLH+ + RN +VPI Sbjct: 176 FGLSPRRINVSTVGILPGIKKLNKEFPYVNLAYSLHSPFTEERNEMVPI 224 >gi|167951358|ref|ZP_02538432.1| radical SAM enzyme, Cfr family protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 133 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 63/119 (52%), Positives = 80/119 (67%), Gaps = 1/119 (0%) Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA +N+LR+ LVPIN+KYPLE LI ACR + R+IT+EYVML GINDS + A Sbjct: 1 MSLHAPTNELRDQLVPINQKYPLEELIPACRDFIKGDKRRKITWEYVMLDGINDSIQHAK 60 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT-PRGLDI 358 LI++L+G P+K+NLIPFNP+PG Y S + S SG SSP+ P G DI Sbjct: 61 ALIRLLEGTPSKLNLIPFNPFPGTSYKTSPRGAGRGISPAPDESGASSPLPARPAGEDI 119 >gi|147867042|emb|CAN80514.1| hypothetical protein VITISV_023658 [Vitis vinifera] Length = 206 Score = 116 bits (290), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 70/193 (36%), Positives = 110/193 (56%), Gaps = 9/193 (4%) Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLAIS 242 MGMGEP+ N +V ++ + + + +R IT+S+ G VPN + ++ LAIS Sbjct: 1 MGMGEPMLNLKSVIEAHRCLNKDVQIG--QRMITISSVG-VPNTIKKLASYKLQSTLAIS 57 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA + LR +VP + YPL+ ++ CR Y L +RR++FEY +L G+ND+ A+ L Sbjct: 58 LHAPNQKLRETIVPSAKSYPLDAIMKDCRDY-FLETSRRVSFEYTLLAGVNDAVEHAIEL 116 Query: 303 IKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 ++L G +NLIPFNP G E+ K + F+ ++ + +R RGLD A Sbjct: 117 AELLHEWGPGYHVNLIPFNPIEGSEFQRPYNK-VQAFAAALESRKVTVSVRQTRGLDASA 175 Query: 361 ACGQLKSLSKRIP 373 ACGQL++ ++ P Sbjct: 176 ACGQLRNEFQKSP 188 >gi|308802175|ref|XP_003078401.1| unnamed protein product [Ostreococcus tauri] gi|116056853|emb|CAL53142.1| unnamed protein product [Ostreococcus tauri] Length = 368 Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 91/310 (29%), Positives = 134/310 (43%), Gaps = 52/310 (16%) Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE-------KSRGTLCVSS 120 F + + E S DG+ L+ VE++ + E K R TLCVSS Sbjct: 21 FELYTTRVAHESASSDGSTTKLI----------VELQDGHKIEACVMRHAKGRTTLCVSS 70 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC + C+FC TGT + NL + EIL Q+ A + Sbjct: 71 QVGCKMGCTFCATGTLGELGNLASFEILEQLAHANRV----------------------- 107 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVML 239 PL N+D+V +++ + +D + S +IT+ST G +P + + + G L Sbjct: 108 -------AAPLNNYDSVIEAIGVMTDDKAFALSASKITVSTVGVIPRMRTLTRDAPGTCL 160 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA + +LR +VP Y L+ L+ Y + EY +L G+ND A Sbjct: 161 ALSLHAPTQELRQKIVPTATAYKLDDLMRVLEEYLASGPKMKTMIEYCVLGGVNDDETCA 220 Query: 300 LNLIKILKGIPAKI--NLIPFNP--WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 L ++ +G KI NLIP NP P + + +K+ G R G Sbjct: 221 EKLGELFRGKEEKIILNLIPLNPTDTPAGHVPPTPEAVRKMMEILMKKYGLFVTRRHTMG 280 Query: 356 LDILAACGQL 365 DI ACGQL Sbjct: 281 DDIAGACGQL 290 >gi|330894490|gb|EGH27151.1| radical SAM protein [Pseudomonas syringae pv. mori str. 301020] Length = 131 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 57/129 (44%), Positives = 80/129 (62%), Gaps = 9/129 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ ++E+E+ IG R R Q+ KWI+ G+ DF M+++S+ +R L Sbjct: 12 KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 67 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 68 ACAEVRGPEVVSEDISSDGTRKWVVRVESGSC-----VETVYIPQGKRGTLCVSSQAGCA 122 Query: 126 LTCSFCYTG 134 L CSFC TG Sbjct: 123 LDCSFCSTG 131 >gi|225849839|ref|YP_002730073.1| radical SAM enzyme, Cfr family [Persephonella marina EX-H1] gi|225646250|gb|ACO04436.1| radical SAM enzyme, Cfr family [Persephonella marina EX-H1] Length = 271 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 82/268 (30%), Positives = 138/268 (51%), Gaps = 35/268 (13%) Query: 103 IETVYIPEKSRG-TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF 161 +E+VY RG TLCVSSQ+GC + CSFC +G L+RNL+ +EI+ Q +A S Sbjct: 25 VESVYY----RGDTLCVSSQLGCPVRCSFCASGMNGLIRNLSYDEIIDQYRIAVS----- 75 Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221 EGM +I NI G+GEPL N++NVKK+ D +GL + + T Sbjct: 76 ------EGM-------EIKNIAFAGIGEPLLNWENVKKAFYHFKD-IGL-----KASFYT 116 Query: 222 SGF-VPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR-HYPGLSNA 279 +GF + N + E +++SLHAV+++ R L+P + PL+ ++D + H LS Sbjct: 117 TGFPLKNFKELLELPHNGVSLSLHAVTDEKRKQLIPYGQ--PLDQILDVFKDHLSKLSRR 174 Query: 280 RRITFE--YVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTF 337 +R + Y+++ G+NDS + L +I + + ++L+ +N G +Y + ++ Sbjct: 175 KRKMYSIAYLLIGGVNDSEEEIQKLSQIARDLQVGVSLLKYNEIDGIDYRSTSDEEYERV 234 Query: 338 SECIKRSGYSSPIRTPRGLDILAACGQL 365 ++ +G + + CG L Sbjct: 235 FLQLRENGIRVTLSNRYRTRKIGGCGTL 262 >gi|225456810|ref|XP_002275716.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 198 Score = 112 bits (281), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 56/132 (42%), Positives = 83/132 (62%) Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 E LA+SL+A +N++RN ++PINRKY L +L+ R + ++ FEYVML G+N Sbjct: 45 ESNCALAVSLNATTNEVRNWVMPINRKYNLSLLLQTLREELRSKHNYKVLFEYVMLAGVN 104 Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353 DS DA LI +++GIP K+NLI FNP G ++ + ++ I+ F + +G +R Sbjct: 105 DSLEDARRLIDLVQGIPCKVNLISFNPHCGSQFKPTSEEKIIEFRNILAEAGCIVFLRPS 164 Query: 354 RGLDILAACGQL 365 RG D +AACGQL Sbjct: 165 RGDDQMAACGQL 176 >gi|82794611|ref|XP_728508.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23484893|gb|EAA20073.1| unnamed protein product [Plasmodium yoelii yoelii] Length = 351 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 86/267 (32%), Positives = 130/267 (48%), Gaps = 30/267 (11%) Query: 102 EIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF 161 +IE + S +LC+SSQ+GCS C FC TG + R L +EI Q+L + Sbjct: 92 KIEATALDFGSHTSLCISSQIGCSFGCKFCATGQIGIKRQLELDEITDQLLYFQ------ 145 Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221 S I N+ MGMGEPL N NV +++ ++S S S RRI +ST Sbjct: 146 ------------SKNVNIKNVSFMGMGEPLAN-PNVFEAIRFFNNSNFFSLSSRRINIST 192 Query: 222 SGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280 G +P I ++ E V L+ SLH+ + R+ LVPIN+ +P ++D +N R Sbjct: 193 VGLLPGIKKLNELFPQVNLSFSLHSPFTEERDQLVPINKLFPFHEVLDLLDDRIAKTN-R 251 Query: 281 RITFEYVMLKGINDSPRDALNLI-KILKGIPA-----KINLIPFNPWPG-CEYL--CSDQ 331 R+ Y+++K +NDS A L I+K P+ I LIP+N C+ ++ Sbjct: 252 RVWISYILIKDVNDSTDHAEALCDHIIKRPPSVRYLYNICLIPYNKAKNVCDEFQRLDEE 311 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDI 358 + I F + +++ S R LDI Sbjct: 312 EKIRQFEKILRKHRISFFYRYKILLDI 338 >gi|6434045|emb|CAB60749.1| hypothetical protein [Staphylococcus aureus] Length = 133 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 54/131 (41%), Positives = 84/131 (64%), Gaps = 1/131 (0%) Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA +++R+ L+PINR Y +E LI+A ++Y +N RR+TFEY + G+ND A Sbjct: 1 SLHAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTN-RRVTFEYGLFGGVNDQLEHARE 59 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++KG+ +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AA Sbjct: 60 LAHLIKGLNCHVNLIPVNHVPERNYVKTAKNDIFKFEKELKRLGINATIRREQGSDIDAA 119 Query: 362 CGQLKSLSKRI 372 CGQL++ +++ Sbjct: 120 CGQLRAKERQV 130 >gi|70948819|ref|XP_743877.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56523585|emb|CAH84934.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi] Length = 379 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 91/282 (32%), Positives = 130/282 (46%), Gaps = 38/282 (13%) Query: 102 EIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF 161 +IE + S +LC+SSQ+GCS C FC TG + R L +EI Q+L Sbjct: 87 KIEATALDFGSHTSLCISSQIGCSFGCKFCATGQIGIKRQLELDEITDQLL--------- 137 Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221 S I N+ MGMGEPL N NV +++ ++S S S RRI +ST Sbjct: 138 ---------YFQSKNVNIKNVSFMGMGEPLAN-PNVFEAIRFFNNSNFFSLSSRRINIST 187 Query: 222 SGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280 G +P I ++ E V L+ SLH+ + R+ LVPIN+ +P ++D +R Sbjct: 188 VGLLPGIKKLNELFPQVNLSFSLHSPFTEERDQLVPINKLFPFHEVLDLLDDRIA-KTSR 246 Query: 281 RITFEYVMLKGINDSPRDALNLI-KILKGIPA-----KINLIPFNPWPGCEYLCS----- 329 R+ Y+++K +NDS A L ILK P+ I LIP+N + Sbjct: 247 RVWISYILIKDVNDSTDHAEALCDHILKRPPSVRYLYNICLIPYNKGITFHRISFFYRYS 306 Query: 330 -----DQKDIVTFSECIKRSGYSSPI-RTPRGLDILAACGQL 365 ++ I T I + S + R G I AACGQL Sbjct: 307 IIKIVKKQMIYTKYTTINMFFFLSFLNRNSFGYAIDAACGQL 348 >gi|221482944|gb|EEE21275.1| Radical SAM domain-containing protein, putative [Toxoplasma gondii GT1] Length = 482 Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 86/269 (31%), Positives = 129/269 (47%), Gaps = 37/269 (13%) Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172 R T+C+S+QVGC + C+FC TGT RNL EIL Q+ A + Sbjct: 77 RATVCLSAQVGCQMGCTFCATGTMGKKRNLAEWEILEQLYHASRV--------------- 121 Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232 I NIV MGMGEPL N+++V S+ + + R+ +ST G I ++ Sbjct: 122 ----ETIRNIVFMGMGEPLDNYNSVVSSIRFMTQPNKFAIGGHRVCISTVGLPHKIRQLA 177 Query: 233 EEI-GVMLAISLHAVSNDLRNILVP-INRKYPLEMLIDACRHY---------PGLSNARR 281 ++ LA+SLHA R L+P + LE +++A + G+ N Sbjct: 178 SDLPACRLALSLHAPDQPTRLKLMPRAAAGWKLERVLEATDEFVKQQKRLNSTGMKNI-G 236 Query: 282 ITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPWP-GCEYLCSDQKDIVTFS 338 + EY+M++ +ND+ A L +IL + +NLIP+NP +Y S Q+ + F Sbjct: 237 LLVEYIMIQDVNDTLEQAHALGRILQPRADAVIVNLIPYNPTDVPYDYKPSTQERVDDFL 296 Query: 339 ECIKRSGYSSP--IRTPRGLDILAACGQL 365 I R Y+ +R G DI +ACGQL Sbjct: 297 -TILRKEYAIKVLVRQTLGQDIDSACGQL 324 >gi|95007443|emb|CAJ20664.1| hypothetical protein, conserved [Toxoplasma gondii RH] Length = 641 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 86/269 (31%), Positives = 129/269 (47%), Gaps = 37/269 (13%) Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172 R T+C+S+QVGC + C+FC TGT RNL EIL Q+ A + Sbjct: 236 RATVCLSAQVGCQMGCTFCATGTMGKKRNLAEWEILEQLYHASRV--------------- 280 Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232 I NIV MGMGEPL N+++V S+ + + R+ +ST G I ++ Sbjct: 281 ----ETIRNIVFMGMGEPLDNYNSVVSSIRFMTQPNKFAIGGHRVCISTVGLPHKIRQLA 336 Query: 233 EEI-GVMLAISLHAVSNDLRNILVP-INRKYPLEMLIDACRHY---------PGLSNARR 281 ++ LA+SLHA R L+P + LE +++A + G+ N Sbjct: 337 SDLPACRLALSLHAPDQPTRLKLMPRAAAGWKLERVLEATDEFVKQQKRLNSTGMKNI-G 395 Query: 282 ITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPWP-GCEYLCSDQKDIVTFS 338 + EY+M++ +ND+ A L +IL + +NLIP+NP +Y S Q+ + F Sbjct: 396 LLVEYIMIQDVNDTLEQAHALGRILQPRADAVIVNLIPYNPTDVPYDYKPSTQERVDDFL 455 Query: 339 ECIKRSGYSSP--IRTPRGLDILAACGQL 365 I R Y+ +R G DI +ACGQL Sbjct: 456 -TILRKEYAIKVLVRQTLGQDIDSACGQL 483 >gi|237840861|ref|XP_002369728.1| radical SAM domain-containing protein [Toxoplasma gondii ME49] gi|211967392|gb|EEB02588.1| radical SAM domain-containing protein [Toxoplasma gondii ME49] Length = 619 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 86/269 (31%), Positives = 129/269 (47%), Gaps = 37/269 (13%) Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172 R T+C+S+QVGC + C+FC TGT RNL EIL Q+ A + Sbjct: 214 RATVCLSAQVGCQMGCTFCATGTMGKKRNLAEWEILEQLYHASRV--------------- 258 Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232 I NIV MGMGEPL N+++V S+ + + R+ +ST G I ++ Sbjct: 259 ----ETIRNIVFMGMGEPLDNYNSVVSSIRFMTQPNKFAIGGHRVCISTVGLPHKIRQLA 314 Query: 233 EEI-GVMLAISLHAVSNDLRNILVP-INRKYPLEMLIDACRHY---------PGLSNARR 281 ++ LA+SLHA R L+P + LE +++A + G+ N Sbjct: 315 SDLPACRLALSLHAPDQPTRLKLMPRAAAGWKLERVLEATDEFVKQQKRLNSTGMKNI-G 373 Query: 282 ITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPWP-GCEYLCSDQKDIVTFS 338 + EY+M++ +ND+ A L +IL + +NLIP+NP +Y S Q+ + F Sbjct: 374 LLVEYIMIQDVNDTLEQAHALGRILQPRADAVIVNLIPYNPTDVPYDYKPSTQERVDDFL 433 Query: 339 ECIKRSGYSSP--IRTPRGLDILAACGQL 365 I R Y+ +R G DI +ACGQL Sbjct: 434 -TILRKEYAIKVLVRQTLGQDIDSACGQL 461 >gi|307127683|ref|YP_003879714.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae 670-6B] gi|306484745|gb|ADM91614.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae 670-6B] Length = 300 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 58/138 (42%), Positives = 88/138 (63%), Gaps = 4/138 (2%) Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 E + V LA+SLHA +N+LR+ ++ INR +P+E L A +Y +N RR+TFEY+ML + Sbjct: 148 EGVQVNLAVSLHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEV 206 Query: 293 NDSPRDALNLIKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSP 349 ND AL L ++LK I + +NLIP+NP +Y S ++ ++ F + +K+ G + Sbjct: 207 NDGVEQALELAELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCV 266 Query: 350 IRTPRGLDILAACGQLKS 367 +R G DI AACGQL+S Sbjct: 267 VRQEHGTDIDAACGQLRS 284 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 88/157 (56%), Gaps = 13/157 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160 C++ C+FC +G K R+L EI+ Q++L + D Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFAD 147 >gi|221503269|gb|EEE28967.1| Radical SAM domain-containing protein, putative [Toxoplasma gondii VEG] Length = 619 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 86/269 (31%), Positives = 129/269 (47%), Gaps = 37/269 (13%) Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172 R T+C+S+QVGC + C+FC TGT RNL EIL Q+ A + Sbjct: 214 RATVCLSAQVGCQMGCTFCATGTMGKKRNLAEWEILEQLYHASRV--------------- 258 Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232 I NIV MGMGEPL N+++V S+ + + R+ +ST G I ++ Sbjct: 259 ----ETIRNIVFMGMGEPLDNYNSVVSSIRFMTQPNKFAIGGHRVCISTVGLPHKIRQLA 314 Query: 233 EEI-GVMLAISLHAVSNDLRNILVP-INRKYPLEMLIDACRHY---------PGLSNARR 281 ++ LA+SLHA R L+P + LE +++A + G+ N Sbjct: 315 SDLPACRLALSLHAPDQPTRLKLMPRAAAGWKLERVLEATDEFVKQQKRLNSTGMKNI-G 373 Query: 282 ITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPWP-GCEYLCSDQKDIVTFS 338 + EY+M++ +ND+ A L +IL + +NLIP+NP +Y S Q+ + F Sbjct: 374 LLVEYIMIQDVNDTLEQAHALGRILQPRADAVIVNLIPYNPTDVPYDYKPSTQERVDDFL 433 Query: 339 ECIKRSGYSSP--IRTPRGLDILAACGQL 365 I R Y+ +R G DI +ACGQL Sbjct: 434 -TILRKEYAIKVLVRQTLGQDIDSACGQL 461 >gi|168492917|ref|ZP_02717060.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae CDC3059-06] gi|183576957|gb|EDT97485.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae CDC3059-06] Length = 300 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 58/138 (42%), Positives = 88/138 (63%), Gaps = 4/138 (2%) Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 E + V LA+SLHA +N+LR+ ++ INR +P+E L A +Y +N RR+TFEY+ML + Sbjct: 148 EGVQVNLAVSLHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEV 206 Query: 293 NDSPRDALNLIKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSP 349 ND AL L ++LK I + +NLIP+NP +Y S ++ ++ F + +K+ G + Sbjct: 207 NDGVEQALELAELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCV 266 Query: 350 IRTPRGLDILAACGQLKS 367 +R G DI AACGQL+S Sbjct: 267 VRQEHGTDIDAACGQLRS 284 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 89/157 (56%), Gaps = 13/157 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ ++ + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLVHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160 C++ C+FC +G K R+L EI+ Q++L + D Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFAD 147 >gi|332076047|gb|EGI86513.1| ribosomal RNA large subunit methyltransferase N [Streptococcus pneumoniae GA41301] Length = 300 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 58/138 (42%), Positives = 88/138 (63%), Gaps = 4/138 (2%) Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 E + V LA+SLHA +N+LR+ ++ INR +P+E L A +Y +N RR+TFEY+ML + Sbjct: 148 EGVQVNLAVSLHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEV 206 Query: 293 NDSPRDALNLIKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSP 349 ND AL L ++LK I + +NLIP+NP +Y S ++ ++ F + +K+ G + Sbjct: 207 NDGVEQALELAELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCV 266 Query: 350 IRTPRGLDILAACGQLKS 367 +R G DI AACGQL+S Sbjct: 267 VRQEHGTDIDAACGQLRS 284 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 87/157 (55%), Gaps = 13/157 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMCQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160 C++ C+FC G K R+L EI+ Q++L + D Sbjct: 111 CNIGCTFCAFGLIKKQRDLNNGEIVAQIMLVQKYFAD 147 >gi|221231562|ref|YP_002510714.1| radical SAM superfamily protein [Streptococcus pneumoniae ATCC 700669] gi|220674022|emb|CAR68535.1| radical SAM superfamily protein [Streptococcus pneumoniae ATCC 700669] Length = 300 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 58/138 (42%), Positives = 87/138 (63%), Gaps = 4/138 (2%) Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 E + V LA+SLHA +N+LR+ + INR +P+E L A +Y +N RR+TFEY+ML + Sbjct: 148 EGVQVNLAVSLHAPNNELRSSTMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEV 206 Query: 293 NDSPRDALNLIKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSP 349 ND AL L ++LK I + +NLIP+NP +Y S ++ ++ F + +K+ G + Sbjct: 207 NDGVEQALELAELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCV 266 Query: 350 IRTPRGLDILAACGQLKS 367 +R G DI AACGQL+S Sbjct: 267 VRQEHGTDIDAACGQLRS 284 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 89/157 (56%), Gaps = 13/157 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ ++ + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLVHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + IV E S DGT K+L P + IETV + + ++CV++QVG Sbjct: 58 DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160 C++ C+FC +G K R+L EI+ Q++L + D Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFAD 147 >gi|325114363|emb|CBZ49920.1| radical SAM enzyme, Cfr family, related [Neospora caninum Liverpool] Length = 512 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 86/270 (31%), Positives = 128/270 (47%), Gaps = 39/270 (14%) Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172 R T+C+S+QVGC + C+FC TGT RNL EIL Q+ A + Sbjct: 89 RATVCLSAQVGCQMGCTFCATGTMGKKRNLAEWEILEQLYHASRV--------------- 133 Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232 KI NIV MGMGEPL N++NV S+ + + + +ST G I ++ Sbjct: 134 ----EKIRNIVFMGMGEPLDNYNNVVASVRFMTQPNKFAIGGHHVCISTVGLPHRIRQLA 189 Query: 233 EEIGV-MLAISLHAVSNDLRNILVP-INRKYPLEMLIDACRHYPGLSNARRIT------- 283 ++ LA+SLHA R L+P + L+ ++DA + + +R+ Sbjct: 190 SDLPTCRLALSLHAPDQPTRLKLMPRAAAGWKLDRVLDATDEF--VKQQKRVNSTAMKNI 247 Query: 284 ---FEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPWP-GCEYLCSDQKDIVTF 337 EY+M++ +ND+ A L +IL + +NLIP+NP +Y S + + F Sbjct: 248 GLLVEYIMIQDVNDTIDQAHALGRILQPRADAVIVNLIPYNPTEVPYDYKPSTPERVDEF 307 Query: 338 SECIKRSGYSSP--IRTPRGLDILAACGQL 365 I R YS +R G DI +ACGQL Sbjct: 308 LR-ILRQDYSIKVLVRQTLGQDIDSACGQL 336 >gi|302841922|ref|XP_002952505.1| hypothetical protein VOLCADRAFT_105556 [Volvox carteri f. nagariensis] gi|300262144|gb|EFJ46352.1| hypothetical protein VOLCADRAFT_105556 [Volvox carteri f. nagariensis] Length = 368 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 94/353 (26%), Positives = 135/353 (38%), Gaps = 141/353 (39%) Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75 ELEE + +G P + R Q+++W+Y Sbjct: 108 ELEEWCISVGEPAK----RAKQLYRWLY-------------------------------- 131 Query: 76 VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135 G RKW+ R + G P + ++VGC++ C FCYTG Sbjct: 132 --------GNRKWI-RNLDQADGDPQAFSAAF-----------KAKVGCAMNCQFCYTGR 171 Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195 L+ NL+ +IL QV+ AR L + + + IP I+NIV MGMGEPL N+D Sbjct: 172 MGLLGNLSTAQILEQVVEARRYLAE-------QSVHIP-----IANIVFMGMGEPLHNYD 219 Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILV 255 VM AI ++R+ +V Sbjct: 220 ----------------------------------------AVMAAI-------EVRDWIV 232 Query: 256 PINRKYPLEMLIDACRH---YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312 P NR+YPLE L+ R Y + EYV+L G+NDS DA L+ + I Sbjct: 233 PTNRRYPLEQLLGVLREAFPYDKRKGDNFVVIEYVLLAGVNDSTEDAKRLLNLTNDIYCL 292 Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +NLI FNP G ++ R+ +G + +AACGQL Sbjct: 293 VNLIVFNPHTGTQF-----------------------SRSSKGDEQMAACGQL 322 >gi|146319331|ref|YP_001199043.1| Fe-S-cluster redox protein [Streptococcus suis 05ZYH33] gi|145690137|gb|ABP90643.1| Predicted Fe-S-cluster redox enzyme [Streptococcus suis 05ZYH33] Length = 208 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 61/186 (32%), Positives = 104/186 (55%), Gaps = 21/186 (11%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI--IYPEIVDEKISCDGTRKWL 89 + R +QIW+W+Y ++ F M+++ + + L +HF + + IV E S DGT K+L Sbjct: 24 KFRATQIWEWLYRSRVQSFAEMTNLPKSLIEKLEEHFVVNPLKQRIVQE--SKDGTIKYL 81 Query: 90 LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149 P + IETV + + ++CV++QVGC++ C+FC +G R+LT+ EI+ Sbjct: 82 FELPDGML-----IETVLMHQHYGLSVCVTTQVGCNIGCTFCASGLIPKQRDLTSGEIVA 136 Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209 Q++L + L + + ++S+IV+MG+GEPL N+DNV L + +D G Sbjct: 137 QIMLVQKYLDE------------RNQNERVSHIVVMGIGEPLDNYDNVMTFLRVVNDDKG 184 Query: 210 LSFSKR 215 L+ R Sbjct: 185 LAIGAR 190 >gi|209879529|ref|XP_002141205.1| radical SAM domain-containing protein [Cryptosporidium muris RN66] gi|209556811|gb|EEA06856.1| radical SAM domain-containing protein [Cryptosporidium muris RN66] Length = 529 Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 101/427 (23%), Positives = 173/427 (40%), Gaps = 115/427 (26%) Query: 37 QIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPA- 94 ++W+++ + +++F + DI + + + +F ++ IV + DG T K ++R Sbjct: 36 RVWRYLIQKNVKEFSDIPDIPKRILEEIQLNFKLLTSNIVQSHTTDDGNTTKLIIRLQDG 95 Query: 95 -----------RC--IGGPVE------IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135 RC + E +E +P R +LCVSSQ+GC + C+FC TGT Sbjct: 96 HEIETVIMRYDRCNDVAKKSENKNLDTLEVPNLPIYRRVSLCVSSQIGCRIGCTFCATGT 155 Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195 L +L EI+ QV A ++L + + N+V MGMGEPL N++ Sbjct: 156 LGLGGSLVTGEIIEQVYHAINILNE-----------------PVKNVVFMGMGEPLENYN 198 Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNIL 254 V ++ I D+ S +I++ST G I + +++ GV L +SLHA LR + Sbjct: 199 EVVDAIKILLDTRLYGLSPSKISISTVGIPSGIVNMADDLPGVGLCLSLHAPDQVLREQI 258 Query: 255 VPINRKYPLEMLIDACRHY----------------------------------PGLSNAR 280 VPI + Y + LI + + P N+ Sbjct: 259 VPIAKMYKISELIRSTDIFIAKSILNKFIKKITDQRNNRTEIKIDNLESTIISPKWFNSH 318 Query: 281 R-ITFEYVMLKGINDS----------------PRDALNLI------------KILKGIPA 311 + EY+++K +NDS ++ +N+I K+ K Sbjct: 319 STVMIEYILIKDVNDSINHAKALANLLNNTYTDKNDINMIFERCIQSERLEKKVAKSFQK 378 Query: 312 K------------INLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 +N++P++ +Y + + TF + G +R G DI Sbjct: 379 AFLDNYKRSNFIFVNILPYSETNATPKYATPSEGKVRTFCRILNNYGIVVTVRRKMGQDI 438 Query: 359 LAACGQL 365 ACGQL Sbjct: 439 GGACGQL 445 >gi|221060556|ref|XP_002260923.1| radical SAM protein [Plasmodium knowlesi strain H] gi|193810997|emb|CAQ42895.1| radical SAM protein, putative [Plasmodium knowlesi strain H] Length = 377 Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 89/315 (28%), Positives = 140/315 (44%), Gaps = 31/315 (9%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 M + + +LLK+ + R QI +Y I M ++ +R + + FS Sbjct: 1 MEKSKRYASLLKMMDRNSFPKYRLQQILDNMYKAKITSVSKMKNVPTNIRREMKKIFSEN 60 Query: 72 YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131 I K R + + F + +IE + S +LC+SSQ+GCS C FC Sbjct: 61 LLSIKPLK-EYKFDRAYKVLFECK---DKEKIEATSLDFGSHKSLCISSQIGCSFACKFC 116 Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191 TG + R L +EI Q+L S + N+ MGMGEPL Sbjct: 117 ATGQIGIKRQLELDEITDQLL------------------YFQSKNENVRNVSFMGMGEPL 158 Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDL 250 N +V +S+ ++ S S RRI +ST G +P I ++ + V L+ SLH+ ++ Sbjct: 159 AN-PHVFESIKFFNNVNLFSLSSRRINISTVGLLPGIKKLNDLHPQVNLSFSLHSPFSEE 217 Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310 R+ LVPIN+ +P ++D + RR+ Y++LK +NDS A L + P Sbjct: 218 RDKLVPINKLFPFHEVLDLLDSRIART-GRRVWISYILLKDVNDSKDHAEALCNHIVQRP 276 Query: 311 AKIN------LIPFN 319 + LIP+N Sbjct: 277 RAVRYLYNVCLIPYN 291 >gi|225854275|ref|YP_002735787.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae JJA] gi|225722744|gb|ACO18597.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae JJA] Length = 300 Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 57/137 (41%), Positives = 87/137 (63%), Gaps = 4/137 (2%) Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 E + V LA+SLHA +N+LR+ ++ INR +P+E L A +Y +N RR+TFEY+ML + Sbjct: 148 EGVQVNLAVSLHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEV 206 Query: 293 NDSPRDALNLIKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSP 349 ND AL L ++LK I + +NLIP+NP +Y S ++ ++ F + +K+ G + Sbjct: 207 NDGVEQALELAELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGGNCV 266 Query: 350 IRTPRGLDILAACGQLK 366 +R G DI AACGQL+ Sbjct: 267 VRQEHGTDIDAACGQLR 283 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 87/157 (55%), Gaps = 13/157 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + IV E S DGT K+L P + IETV + + ++CV++QV Sbjct: 58 DQFVVNPLKQRIVQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVS 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160 C++ C+FC +G K R+L EI+ Q++L + D Sbjct: 111 CNIGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFAD 147 >gi|74317969|ref|YP_315709.1| ribosomal RNA large subunit methyltransferase N [Thiobacillus denitrificans ATCC 25259] gi|123759042|sp|Q3SHI2|Y1951_THIDA RecName: Full=Probable RNA methyltransferase Tbd_1951 gi|74057464|gb|AAZ97904.1| Fe-S-cluster redox enzyme, radical SAM family [Thiobacillus denitrificans ATCC 25259] Length = 362 Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 85/299 (28%), Positives = 138/299 (46%), Gaps = 39/299 (13%) Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133 ++ E DG+ + L+R + +E+V +P R +CVS+QVGC++ C FC T Sbjct: 64 QVHSEHPGEDGSARLLVR-----LADGQTVESVLLP---RDGVCVSTQVGCAVGCVFCMT 115 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 G L+R L+ EI+ QV+LARS R + +V MGMGEP N Sbjct: 116 GRAGLLRQLSGAEIVAQVVLARSR-------------------RPVRKVVFMGMGEPAHN 156 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252 DNV ++ + G+ + + ST G R+ + + A+SLH LR Sbjct: 157 LDNVLDAIELLGLEGGIGH--KNLVFSTVGDRRVFERLPQSTVKPARALSLHTTDRALRR 214 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARR----ITFEYVMLKGINDSPRDALNLIKILKG 308 L+P + L++ Y ARR I +++ +L+GIND+ + + ++L G Sbjct: 215 RLLPRAPDIAPQELVELGEAY-----ARRTGYPIQYQWTLLEGINDTEAELEGIARLLAG 269 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 A +NLIP+N + + + R G + +R G D+ CGQL++ Sbjct: 270 RYAVMNLIPYNATEADGFNRPSWARAAEMARRLHRRGVLAKLRHSAGQDVDGGCGQLRA 328 >gi|225860741|ref|YP_002742250.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae Taiwan19F-14] gi|298229131|ref|ZP_06962812.1| radical SAM enzyme, Cfr family protein [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255804|ref|ZP_06979390.1| radical SAM enzyme, Cfr family protein [Streptococcus pneumoniae str. Canada MDR_19A] gi|225727931|gb|ACO23782.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae Taiwan19F-14] gi|327390124|gb|EGE88467.1| ribosomal RNA large subunit methyltransferase N [Streptococcus pneumoniae GA04375] Length = 300 Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 57/137 (41%), Positives = 87/137 (63%), Gaps = 4/137 (2%) Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 E + V LA+SLHA +N+LR+ ++ INR +P+E L A +Y +N RR+TFEY+ML + Sbjct: 148 EGVQVNLAVSLHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEV 206 Query: 293 NDSPRDALNLIKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSP 349 ND AL L ++LK I + +NLIP+NP +Y S ++ ++ F + +K+ G + Sbjct: 207 NDGVEQALELAELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGGNCV 266 Query: 350 IRTPRGLDILAACGQLK 366 +R G DI AACGQL+ Sbjct: 267 VRQEHGTDIDAACGQLR 283 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 81/145 (55%), Gaps = 9/145 (6%) Query: 18 EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI--IYPEI 75 + + K + Q + R QIW+W+Y + ++ F+ M+++S+++ LN F + + I Sbjct: 10 HQTMQKWVLEQGEKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLKQRI 69 Query: 76 VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135 V E S DGT K+L P + IETV + + ++CV++QVGC++ C+FC +G Sbjct: 70 VQE--SADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCNIGCTFCASGL 122 Query: 136 QKLVRNLTAEEILLQVLLARSLLGD 160 K R+L EI+ Q++L + D Sbjct: 123 IKKQRDLNNGEIVAQIMLVQKYFAD 147 >gi|298502552|ref|YP_003724492.1| Fe-S-cluster redox enzyme [Streptococcus pneumoniae TCH8431/19A] gi|298238147|gb|ADI69278.1| Fe-S-cluster redox enzyme [Streptococcus pneumoniae TCH8431/19A] Length = 288 Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 57/137 (41%), Positives = 87/137 (63%), Gaps = 4/137 (2%) Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 E + V LA+SLHA +N+LR+ ++ INR +P+E L A +Y +N RR+TFEY+ML + Sbjct: 136 EGVQVNLAVSLHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTN-RRVTFEYIMLNEV 194 Query: 293 NDSPRDALNLIKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSP 349 ND AL L ++LK I + +NLIP+NP +Y S ++ ++ F + +K+ G + Sbjct: 195 NDGVEQALELAELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGGNCV 254 Query: 350 IRTPRGLDILAACGQLK 366 +R G DI AACGQL+ Sbjct: 255 VRQEHGTDIDAACGQLR 271 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 45/137 (32%), Positives = 78/137 (56%), Gaps = 9/137 (6%) Query: 26 IPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI--IYPEIVDEKISCD 83 + Q + R QIW+W+Y + ++ F+ M+++S+++ LN F + + IV E S D Sbjct: 6 LEQGEKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLKQRIVQE--SAD 63 Query: 84 GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLT 143 GT K+L P + IETV + + ++CV++QVGC++ C+FC +G K R+L Sbjct: 64 GTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCNIGCTFCASGLIKKQRDLN 118 Query: 144 AEEILLQVLLARSLLGD 160 EI+ Q++L + D Sbjct: 119 NGEIVAQIMLVQKYFAD 135 >gi|68074255|ref|XP_679042.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56499685|emb|CAH98368.1| conserved hypothetical protein [Plasmodium berghei] Length = 308 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 87/273 (31%), Positives = 136/273 (49%), Gaps = 35/273 (12%) Query: 54 SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR 113 +DI + +++L +++ I P I ++K R + + F + +IE + S Sbjct: 47 TDIRKNLKNLFSENILSIKP-IKEDKYD----RAYKILFECK---DKEKIEATALDFGSH 98 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 +LC+SSQ+GCS C FC TG + R L +EI Q+L + Sbjct: 99 TSLCISSQIGCSFACKFCATGQIGIKRQLELDEITDQLLYFQ------------------ 140 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233 S I N+ MGMGEPL N NV +++ + S S S RRI +ST G +P I ++ E Sbjct: 141 SKNVNIKNVSFMGMGEPLAN-PNVFEAIRFFNSSNFFSLSSRRINISTVGLLPGIKKLNE 199 Query: 234 EI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 V L+ SLH+ + R+ LVPIN+ +P ++D +N RR+ Y+++K + Sbjct: 200 LFPQVNLSFSLHSPFTEERDQLVPINKLFPFHEVLDLLDDRIEKTN-RRVWISYILIKDV 258 Query: 293 NDSPRDALNLIK-ILKGIPA-----KINLIPFN 319 NDS A L + I+K P+ I LIP+N Sbjct: 259 NDSTDHAEALCEHIIKRPPSVRYLYNICLIPYN 291 >gi|301119923|ref|XP_002907689.1| ribosomal RNA large subunit methyltransferase N, putative [Phytophthora infestans T30-4] gi|262106201|gb|EEY64253.1| ribosomal RNA large subunit methyltransferase N, putative [Phytophthora infestans T30-4] Length = 224 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 104/206 (50%), Gaps = 27/206 (13%) Query: 38 IWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCI 97 IW+++ F + I + +R LL +HF+ + E+ S DGT K LL+ + Sbjct: 35 IWRYLAQHPDATFADIPGIPKTLRTLLGEHFAHFTTSVTTEQRSADGTVKLLLK-----L 89 Query: 98 GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157 EIE V + R TLCVSSQVGC + C+FC TGT ++ +L + EIL Q+ A Sbjct: 90 QDGHEIEAVIMRHTGRNTLCVSSQVGCQMGCTFCATGTLGIIADLCSGEILEQLAHANR- 148 Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217 V P I N+V MGMGEPL N+D V ++ + GL + + I Sbjct: 149 -------------VAP-----IRNVVFMGMGEPLNNYDAVLAAIRAMTKVFGL--APKYI 188 Query: 218 TLSTSGFVPNIARVGEEIG-VMLAIS 242 TLST G + I ++ + V LA+S Sbjct: 189 TLSTVGVIHRIRQLSRDAPLVRLALS 214 >gi|223993285|ref|XP_002286326.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220977641|gb|EED95967.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 438 Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 94/311 (30%), Positives = 145/311 (46%), Gaps = 44/311 (14%) Query: 79 KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG--TLCVSSQVGCSLTCSFCYTGTQ 136 K+S DGT K LL+ + +E+E+V IP +G TLCVS G + Sbjct: 154 KVSSDGTTKLLLKM----VKDGLEVESVIIPWMDKGFSTLCVSWAAGKDV---------H 200 Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196 ++ ++ + +V+ + PG E+ +P V NIV MGMGEP N D Sbjct: 201 SVLPDMYYASKICRVVES------IPGNEN---KALPPV----DNIVFMGMGEPADNADA 247 Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVP 256 V ++++ D + +IT+ST P+ LA S+HAV + LR LVP Sbjct: 248 VVRAVNTLVDRRMFGVGQSKITISTVAPDPSAFATLGSAPAALAWSVHAVDDSLRRQLVP 307 Query: 257 INRKYPLEMLIDACRHYPGL-SNA-RRITFEYVMLKGINDSPRD-------ALNLIKILK 307 KY +E L L SN RR E ++K +NDSP D A++++K ++ Sbjct: 308 TT-KYSMEELRAGLVKALSLRSNKLRRTMLEVALMKDVNDSPDDARLLSEFAMSIMKEVR 366 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP------IRTPRGLDILAA 361 G +NLIPFN Y + ++ F + + SG + +RT RG + +A Sbjct: 367 GSKIVVNLIPFNDIGHPTYRTPSMERVLEFQKIVVESGDNCDTQVLCYVRTTRGDEESSA 426 Query: 362 CGQLKSLSKRI 372 CGQL + K++ Sbjct: 427 CGQLATKKKQV 437 >gi|319942260|ref|ZP_08016575.1| radical SAM domain-containing protein [Sutterella wadsworthensis 3_1_45B] gi|319804133|gb|EFW01033.1| radical SAM domain-containing protein [Sutterella wadsworthensis 3_1_45B] Length = 392 Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 79/270 (29%), Positives = 124/270 (45%), Gaps = 33/270 (12%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 IE V +P + +CVS+Q+GC++ C FC TG LVR L+ EI Q LAR L + Sbjct: 122 IEEVLLPRRG---VCVSTQMGCAVGCVFCMTGKGGLVRQLSDMEIAAQAALARRLRPE-- 176 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 +V MGMGEP N DNV ++ + G F + + +ST Sbjct: 177 ----------------TKKVVFMGMGEPSHNLDNVLRAAEFLALYGG--FGHKDLVISTV 218 Query: 223 GFVPNIARVGEEIGVM-----LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277 G R+ E + M LA+SLH + R L+P K ++ L +A + Sbjct: 219 G----DERLFEALNRMSARPALAVSLHTTDDAKRRTLLPRGAKMTVKALTEAAEAW-ARK 273 Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTF 337 +++ +++G+ND + LI++L G A +N IP N G Y D++ Sbjct: 274 TGYPTQYQWTLIQGVNDGEEEVNRLIELLTGHYAIVNFIPVNAVDGSVYSRPDREHAAHL 333 Query: 338 SECIKRSGYSSPIRTPRGLDILAACGQLKS 367 +K +G + +R D+ CGQL++ Sbjct: 334 VRRLKSAGIVATLRDSAAQDVDGGCGQLRA 363 >gi|163785797|ref|ZP_02180287.1| hypothetical protein HG1285_18936 [Hydrogenivirga sp. 128-5-R1-1] gi|159878935|gb|EDP72949.1| hypothetical protein HG1285_18936 [Hydrogenivirga sp. 128-5-R1-1] Length = 265 Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 78/268 (29%), Positives = 127/268 (47%), Gaps = 37/268 (13%) Query: 103 IETVYIPEKSRG-TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF 161 IE+V+ RG TLCVSSQVGC + C+FC +G + L+RNL+ EEI+ Q Sbjct: 20 IESVFY----RGNTLCVSSQVGCPVECAFCASGMKGLIRNLSFEEIIDQYE--------- 66 Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221 S I+NI G+GEPL N+DNVKK+ + GL +++ T Sbjct: 67 -----------NSDKENITNITFAGIGEPLLNWDNVKKAFFYFKEK-GL-----KVSFYT 109 Query: 222 SGF-VPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR-HYPGLSNA 279 +GF V N + + +S+HAV+ + R L+P + + LI+ + H LS Sbjct: 110 TGFPVKNFKELLNLPHNGITLSIHAVNEEKRKKLIP--KSVDFDKLIETFKQHLDKLSKR 167 Query: 280 RRITFE--YVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTF 337 ++ + Y+++K +NDS + L +I K + ++L+ FN G + + ++ Sbjct: 168 KKKNYSIAYLLIKNVNDSKEELKKLAEIAKYLQVGVSLLKFNEIEGINFKTTPDEEYEKA 227 Query: 338 SECIKRSGYSSPIRTPRGLDILAACGQL 365 +K G + + CG L Sbjct: 228 FLFLKNEGVKVTLSNKYRTRKIGGCGTL 255 >gi|156102374|ref|XP_001616880.1| Fe-S-cluster redox enzyme [Plasmodium vivax SaI-1] gi|148805754|gb|EDL47153.1| Fe-S-cluster redox enzyme, putative [Plasmodium vivax] Length = 337 Score = 102 bits (255), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 108/225 (48%), Gaps = 27/225 (12%) Query: 102 EIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF 161 +IE + S +LC+SSQ+GCS C FC TG + R L +EI Q+L Sbjct: 87 KIEATSLDFGSHKSLCISSQIGCSFACKFCATGQIGIKRQLELDEITDQLL--------- 137 Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221 S + N+ MGMGEPL N +V +S+ + + S RRI +ST Sbjct: 138 ---------YFQSKNEHVRNVSFMGMGEPLAN-PHVFESIHFFNHVNLFALSSRRINIST 187 Query: 222 SGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280 G +P I ++ + V L+ SLH+ ++ R+ LVPIN+ +P ++D + R Sbjct: 188 VGLLPGIKKLNDLFPQVNLSFSLHSPFSEERDQLVPINKLFPFHEVLDLLDSRITRT-GR 246 Query: 281 RITFEYVMLKGINDSPRDALNLIKILKGIPAKIN------LIPFN 319 R+ Y++LK +NDS A L + P + LIP+N Sbjct: 247 RVWISYILLKDVNDSKDHAEALCSHICQRPRAVRYLYNVCLIPYN 291 >gi|212634295|ref|YP_002310820.1| hypothetical protein swp_1447 [Shewanella piezotolerans WP3] gi|212555779|gb|ACJ28233.1| Conserved hypothetical protein [Shewanella piezotolerans WP3] Length = 137 Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 49/110 (44%), Positives = 68/110 (61%), Gaps = 5/110 (4%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ KW+Y G+ DF+ M++I++ +R L + I+ P+I + S DGT K+ + Sbjct: 20 FRADQLMKWLYHFGVSDFEQMTNINKALRAKLARKCEIVAPKIASYQKSADGTIKFAID- 78 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNL 142 +G E+ETVYIPE R TLCVSSQVGC+L C+FC TG Q R L Sbjct: 79 ----VGNGQEVETVYIPEDDRATLCVSSQVGCALECTFCSTGAQGFNRKL 124 >gi|323456324|gb|EGB12191.1| hypothetical protein AURANDRAFT_5797 [Aureococcus anophagefferens] Length = 234 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 79/249 (31%), Positives = 115/249 (46%), Gaps = 26/249 (10%) Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC T LVR LTA+EIL Q +A + E +P ++NIV MGM Sbjct: 1 CRFCATARMGLVRQLTADEILAQFAIAARVAR--------ESDAMP----PLTNIVFMGM 48 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 G+ N D+VK + + D ++ +IT+ST G P + MLA S+HA Sbjct: 49 GDAGRNVDHVKAAATSLVDGDKFRMARSKITISTVGPSPEAFAALADADGMLAWSIHAAD 108 Query: 248 NDLRNILVPINRKYPL----EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 DLR LVP +R +PL LIDA P + R + +++ +NDS DA L Sbjct: 109 EDLRRKLVPSSR-HPLPELRRGLIDALEARP--ARRRTLMLAATLIRDVNDSDDDAAKLA 165 Query: 304 KILKGI-----PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIK--RSGYSSPIRTPRGL 356 + + I ++LIP NP ++ + ++ ++ I+ R RG Sbjct: 166 EFIGPIVDAAGKCNVDLIPCNPTDHTDFESPSTERVLAYAAKIRELEPRVHVATRLQRGD 225 Query: 357 DILAACGQL 365 D AACGQL Sbjct: 226 DESAACGQL 234 >gi|307108510|gb|EFN56750.1| hypothetical protein CHLNCDRAFT_22096 [Chlorella variabilis] Length = 204 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 60/175 (34%), Positives = 96/175 (54%), Gaps = 23/175 (13%) Query: 216 RITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH-YP 274 +IT+ST G +P + R E ++A+SLHA ++++R+ +VP+NR+ L+ LI+ +P Sbjct: 1 QITVSTVGLIPEMRRFSRESRAVMAVSLHATTDEVRDWIVPVNRREGLQALIECMEELFP 60 Query: 275 GLSNARR----ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 S A R + EY+ML+G+NDS DA L+++ + I KINLI FNP G + S Sbjct: 61 KSSAAPRHGHHVLIEYIMLRGVNDSDDDARRLVQLTQSIRCKINLIVFNPHAGTSFQPST 120 Query: 331 QKDIVTFSECIKR------------SGYSSP------IRTPRGLDILAACGQLKS 367 + + F + + + ++ P +R RG D +AACGQL S Sbjct: 121 PERVYAFRSILIQARRPQQHTHSLTATHTQPHCHVATVRDSRGDDQMAACGQLGS 175 >gi|188996350|ref|YP_001930601.1| Radical SAM domain protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188931417|gb|ACD66047.1| Radical SAM domain protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 269 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 84/275 (30%), Positives = 132/275 (48%), Gaps = 50/275 (18%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 IE+V+ R TLCVSSQVGCS+ C+FC +G L+RNL+++EI+ Q +A+ Sbjct: 25 IESVHY----RTTLCVSSQVGCSVRCAFCASGLNGLIRNLSSQEIINQFEIAK------- 73 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 G +I+NI G+GEPL NF+NVK++ S+GL +++ T+ Sbjct: 74 -----------DQGFEITNIAFAGIGEPLLNFENVKQAFDYFK-SIGL-----KVSFYTT 116 Query: 223 GF-VPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR-HYPGLSNAR 280 GF + + L +SLH+V + R L+P + +E LI H LS+ + Sbjct: 117 GFPIKYFKELLHLNHDGLTLSLHSVLEEKRKSLIP--NSHSIEELIQVFENHLKTLSSRK 174 Query: 281 RITFE--YVMLKGINDSPRDALNLIKILKGIPAKINL--------IPFNPWPGCEYLCSD 330 R + Y+++ G NDS + L I K + ++L +PF P EY Sbjct: 175 RKLYSIGYLLIYGENDSDEELEALANIAKRLNIGVSLLKYNEIESLPFKTTPDEEY---- 230 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +K + R+ S+ RT + + CG L Sbjct: 231 EKAFLKLKSHGVRTTLSNRYRTRK----IGGCGTL 261 >gi|330998689|ref|ZP_08322418.1| putative 23S rRNA m2A2503 methyltransferase [Parasutterella excrementihominis YIT 11859] gi|329576428|gb|EGG57940.1| putative 23S rRNA m2A2503 methyltransferase [Parasutterella excrementihominis YIT 11859] Length = 341 Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 85/310 (27%), Positives = 143/310 (46%), Gaps = 34/310 (10%) Query: 76 VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135 EK + +W+L+ G + IE V +P R +CVS+QVGC++ C FC TG Sbjct: 61 AQEKAESETGTRWVLK----AYDGQL-IECVLLP---REGVCVSTQVGCAVGCVFCMTGK 112 Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195 L+R LT E+ QV A + + P + +V+MGMGEP N Sbjct: 113 SGLIRQLTDLEVAGQVQYA---MRNAP----------------VKKVVLMGMGEPSHNLR 153 Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNIL 254 +V ++ G+ + + + +ST G + E +I LAISLH+ ++ R L Sbjct: 154 SVFSAVEHIVRYSGIGY--KEVVISTVGDKRLFKALMESQIKPALAISLHSAMDEKRRSL 211 Query: 255 VPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKIN 314 +P + ++ +++ Y + I +++ ++ G+ND D + + L A +N Sbjct: 212 LPRAAELTVKEILEFGAKYAEVGK-YPIQYQWTLINGVNDGV-DEIEALAPLWSRQAILN 269 Query: 315 LIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS-KRIP 373 +IP N G Y + I E + +G R D+ CGQL++ + KR P Sbjct: 270 MIPVNAVEGSPYKRPSAEQIERIKEACRANGILLKFRDSAAQDVDGGCGQLRARALKRKP 329 Query: 374 KV-PRQEMQI 382 + P QE++I Sbjct: 330 AIQPAQELKI 339 >gi|302854556|ref|XP_002958785.1| hypothetical protein VOLCADRAFT_108314 [Volvox carteri f. nagariensis] gi|300255893|gb|EFJ40175.1| hypothetical protein VOLCADRAFT_108314 [Volvox carteri f. nagariensis] Length = 993 Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 75/239 (31%), Positives = 110/239 (46%), Gaps = 62/239 (25%) Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191 + GT L NL A EI+ Q++ AR+ V P I NIV MGMGEPL Sbjct: 771 WVGTMGLKGNLNAGEIVEQLMHARA--------------VTP-----IRNIVFMGMGEPL 811 Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDL 250 N++ V+ ++++ +DS +R +T+ST G VP I ++ +++ GV LA+SLHA + +L Sbjct: 812 NNYEAVRSAVAMMTDSRFFGLRRRHVTVSTVGVVPRIKQLAQDLPGVSLALSLHAPTQEL 871 Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310 R +VP R Y L +L+DA G Sbjct: 872 RAKIVPSARAYKLPVLMDA--------------------------------------GDD 893 Query: 311 AKINLIPFNPW---PGCEYLCSDQKDIVTFSECIKRS-GYSSPIRTPRGLDILAACGQL 365 INLIP+NP G + + + F ++ + G + IR G DI ACGQL Sbjct: 894 VVINLIPWNPIYQPEGPFFNAPAEGSVAAFQGVLRHTYGLHTTIRQEMGQDISGACGQL 952 >gi|303258097|ref|ZP_07344105.1| radical SAM enzyme, Cfr family [Burkholderiales bacterium 1_1_47] gi|302859116|gb|EFL82199.1| radical SAM enzyme, Cfr family [Burkholderiales bacterium 1_1_47] Length = 350 Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 85/310 (27%), Positives = 143/310 (46%), Gaps = 34/310 (10%) Query: 76 VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135 EK + +W+L+ G + IE V +P R +CVS+QVGC++ C FC TG Sbjct: 70 AQEKAESETGTRWVLK----AYDGQL-IECVLLP---REGVCVSTQVGCAVGCVFCMTGK 121 Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195 L+R LT E+ QV A + + P + +V+MGMGEP N Sbjct: 122 SGLIRQLTDLEVAGQVQYA---MRNAP----------------VKKVVLMGMGEPSHNLR 162 Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNIL 254 +V ++ G+ + + + +ST G + E +I LAISLH+ ++ R L Sbjct: 163 SVFSAVEHIVRYSGIGY--KEVVISTVGDKRLFKALMESQIKPALAISLHSAMDEKRRSL 220 Query: 255 VPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKIN 314 +P + ++ +++ Y + I +++ ++ G+ND D + + L A +N Sbjct: 221 LPRAAELTVKEILEFGAKYAEVGK-YPIQYQWTLINGVNDGV-DEIEALAPLWSRQAILN 278 Query: 315 LIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS-KRIP 373 +IP N G Y + I E + +G R D+ CGQL++ + KR P Sbjct: 279 MIPVNAVEGSPYKRPSAEQIERIKEACRANGILLKFRDSAAQDVDGGCGQLRARALKRKP 338 Query: 374 KV-PRQEMQI 382 + P QE++I Sbjct: 339 AIQPAQELKI 348 >gi|237756412|ref|ZP_04584954.1| radical SAM protein [Sulfurihydrogenibium yellowstonense SS-5] gi|237691428|gb|EEP60494.1| radical SAM protein [Sulfurihydrogenibium yellowstonense SS-5] Length = 269 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 84/275 (30%), Positives = 131/275 (47%), Gaps = 50/275 (18%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 IE+V+ R TLCVSSQVGCS+ C+FC +G L+RNL+++EI+ Q +A+ Sbjct: 25 IESVHY----RTTLCVSSQVGCSVRCAFCASGLNGLMRNLSSQEIINQYEIAK------- 73 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 G +I+NI G+GEPL NF+NVK++ S+GL +++ T+ Sbjct: 74 -----------DKGFEITNIAFAGIGEPLLNFENVKQAFDYFK-SIGL-----KVSFYTT 116 Query: 223 GF-VPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR-HYPGLSNAR 280 GF + + L +SLH+V + R L+P + +E LI H LS+ + Sbjct: 117 GFPIKYFKELLHLNHDGLTLSLHSVLEEKRKSLIP--NSHSIEELIQVFENHLKTLSSRK 174 Query: 281 RITFE--YVMLKGINDSPRDALNLIKILKGIP--------AKINLIPFNPWPGCEYLCSD 330 R + Y+++ G NDS + L I K + +I +PF P EY Sbjct: 175 RKLYSIGYLLIYGENDSDEELEALANIAKRLNIGVFLLKYNEIESLPFKTTPDEEY---- 230 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +K + R+ S+ RT + + CG L Sbjct: 231 EKAFLKLKSNGVRTTLSNRYRTRK----IGGCGTL 261 >gi|75762654|ref|ZP_00742496.1| Radical SAM family enzyme [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74489853|gb|EAO53227.1| Radical SAM family enzyme [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 246 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 104/192 (54%), Gaps = 23/192 (11%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++S+ +R L Sbjct: 15 KKPSIYSLQIHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I + ++ S DGT K+L + + IETV + + ++CV++QVGC Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQ-----LYDGYSIETVLMRHEYGNSICVTTQVGC 125 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171 Query: 185 MGMGEPLCNFDN 196 MG+GEP N+DN Sbjct: 172 MGIGEPFDNYDN 183 >gi|225848095|ref|YP_002728258.1| radical SAM enzyme, Cfr family [Sulfurihydrogenibium azorense Az-Fu1] gi|225643916|gb|ACN98966.1| radical SAM enzyme, Cfr family [Sulfurihydrogenibium azorense Az-Fu1] Length = 276 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 114/222 (51%), Gaps = 34/222 (15%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 IE+V+ R TLCVSSQVGCS+ CSFC +G L RNL+ +EI+ Q L+ Sbjct: 25 IESVHY----RKTLCVSSQVGCSIKCSFCASGLNGLTRNLSFDEIINQYLM--------- 71 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 + G +I +I G+GEPL N++NVK++ S GLS ++ T+ Sbjct: 72 ---------VKDKGYEIESIAFAGIGEPLLNWENVKQAFDYFK-SQGLS-----VSFYTT 116 Query: 223 GF-VPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR-HYPGLSNAR 280 GF + N ++ + +SLH+V + R L+P + + LI + H LSN + Sbjct: 117 GFPISNFKQLLALNHDGVNLSLHSVFEEKRKSLIP--NSHTISQLIQVFKDHLQQLSNRK 174 Query: 281 RITFE--YVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 + + Y+++ G NDS + L +I K + ++L+ +N Sbjct: 175 KKLYNIAYILIYGENDSYEEIDKLGEIAKELGIGVSLLKYNE 216 >gi|288817723|ref|YP_003432070.1| putative Fe-S cluster redox enzyme [Hydrogenobacter thermophilus TK-6] gi|288787122|dbj|BAI68869.1| putative Fe-S cluster redox enzyme [Hydrogenobacter thermophilus TK-6] gi|308751322|gb|ADO44805.1| Radical SAM domain protein [Hydrogenobacter thermophilus TK-6] Length = 264 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 85/283 (30%), Positives = 127/283 (44%), Gaps = 66/283 (23%) Query: 102 EIETVYIPEKSRG-TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160 +IE V+ RG TLC+S+QVGC++ C FC +G+ VRNLT EEIL Q L R L Sbjct: 24 KIEAVFY----RGDTLCISTQVGCAIRCPFCLSGSAGFVRNLTYEEILAQYYLLRDTL-- 77 Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLS 220 I I + G+GEPL N+ +V ++ + GL +++ Sbjct: 78 -----------------PIKRIAVAGIGEPLMNYSHVIRAFWKFKEE-GL-----KVSFY 114 Query: 221 TSGFVPNIARVGEEIGV---MLAISLHAVSNDLRNILVPINRKYPLEMLIDACR-HYPGL 276 T+GF P+I + E I + L IS+H+ ++ R L+P L LID R P + Sbjct: 115 TTGF-PHI-HLRELIHIPHNGLTISIHSTKSEKRRKLIP--HGGDLNALIDMLREELPRM 170 Query: 277 SNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDI 334 S +R ++ Y++LKG+NDS D K+++ + L+ +N Sbjct: 171 SKRKRKKVSLAYLLLKGVNDSYEDLEEFAKLVRDLGVSATLLYYNS-------------- 216 Query: 335 VTFSECIKRSGYSSPIRTPRGL------------DILAACGQL 365 F E + +S Y RG D L CG L Sbjct: 217 TGFFETMSKSEYEERFLYLRGYGIRVSLSTRFRKDSLGGCGTL 259 >gi|297733650|emb|CBI14897.3| unnamed protein product [Vitis vinifera] Length = 133 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 47/111 (42%), Positives = 68/111 (61%) Query: 255 VPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKIN 314 +PINRKY L +L+ R + ++ FEYVML G+NDS DA LI +++GIP K+N Sbjct: 1 MPINRKYNLSLLLQTLREELRSKHNYKVLFEYVMLAGVNDSLEDARRLIDLVQGIPCKVN 60 Query: 315 LIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LI FNP G ++ + ++ I+ F + +G +R RG D +AACGQL Sbjct: 61 LISFNPHCGSQFKPTSEEKIIEFRNILAEAGCIVFLRPSRGDDQMAACGQL 111 >gi|15606673|ref|NP_214053.1| hypothetical protein aq_1528 [Aquifex aeolicus VF5] gi|2983905|gb|AAC07456.1| hypothetical protein aq_1528 [Aquifex aeolicus VF5] Length = 270 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 83/274 (30%), Positives = 129/274 (47%), Gaps = 42/274 (15%) Query: 102 EIETVYIPEK--SRG-TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLL 158 E+E Y E RG TLCVS+QVGC + C+FC +G L RNL+AEEI Q LL Sbjct: 18 ELEDGYTVESVFYRGDTLCVSTQVGCPVRCTFCASGKNGLFRNLSAEEIYNQY----ELL 73 Query: 159 GD-FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR-- 215 D +P I I + G+GEPL N+ NVK++ F K Sbjct: 74 KDRYP----------------IKRIAVAGIGEPLSNWRNVKEAFE--------KFKKEGL 109 Query: 216 RITLSTSGF-VPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC-RHY 273 +++ T+GF ++ + + ISLH+++++ R L+P K LE +I Sbjct: 110 KVSFYTTGFPTKHLRELLHLPHSGVTISLHSLNDETRKYLMPHAGK--LEEVIKVLEEEL 167 Query: 274 PGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 P LS+ +R ++ Y++LK +NDS + L ++ K + I L+ +N E+ + Sbjct: 168 PKLSSKKRKKVSLAYILLKDVNDSQEELEKLAELAKRLGVSITLLYYN--KTFEFEPVSE 225 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 K+ ++ G + T D L CG L Sbjct: 226 KEYEEAFLFLRSKGVRVTLSTRFRKDKLGGCGTL 259 >gi|57505365|ref|ZP_00371294.1| radical SAM enzyme, Cfr family [Campylobacter upsaliensis RM3195] gi|57016501|gb|EAL53286.1| radical SAM enzyme, Cfr family [Campylobacter upsaliensis RM3195] Length = 286 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 67/207 (32%), Positives = 102/207 (49%), Gaps = 40/207 (19%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +++ ++ EEL E + + R QI +WIY + DF MS++ + +R L ++ Sbjct: 6 NILDLLPEELNEKIQPM--------FRVKQICQWIYQKYADDFSKMSNLPKNLREELAKN 57 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-------------SRG 114 + + + E+ S DG+ K+L + + IE+V +P K ++ Sbjct: 58 YHFEPLKCIKEERSKDGSIKYLFE-----LEDGLRIESVLLPMKEEKFDEEGKRLSHAKF 112 Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 T+CVSSQVGC CSFC T L RNL+A EI+ Q+L + IP Sbjct: 113 TICVSSQVGCRSGCSFCLTAKGGLKRNLSAGEIVGQILWIKR------------QNHIPY 160 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSL 201 R NIV MGMGEPL N +NV K++ Sbjct: 161 ERR--VNIVYMGMGEPLDNLNNVAKAV 185 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 66/199 (33%), Positives = 102/199 (51%), Gaps = 12/199 (6%) Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSF-----SKRRITLSTSGFVPNIARVGEEIGV 237 V++ M E FD K LS A ++ +S S L+ G + GE +G Sbjct: 91 VLLPMKEE--KFDEEGKRLSHAKFTICVSSQVGCRSGCSFCLTAKGGLKRNLSAGEIVGQ 148 Query: 238 MLAIS-LHAVSNDLRNILVPINRKYPLEMLID---ACRHYPGLSNARRITFEYVMLKGIN 293 +L I + + + R +V + PL+ L + A R +P + +++ FEY+++ GIN Sbjct: 149 ILWIKRQNHIPYERRVNIVYMGMGEPLDNLNNVAKAVREFP-IDMRKKVMFEYLLIDGIN 207 Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353 D A L+K+L GI AK+NLI FNP G Y + ++ V F + + + G + IR Sbjct: 208 DKIEHAKELVKLLNGIKAKVNLILFNPHQGSIYKRPNLENAVKFQDLLSQKGVTCTIRES 267 Query: 354 RGLDILAACGQLKSLSKRI 372 +GLDI AACGQLK K + Sbjct: 268 KGLDISAACGQLKEREKNL 286 >gi|171920772|ref|ZP_02931966.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185178859|ref|ZP_02964635.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024156|ref|ZP_02996884.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518505|ref|ZP_03003979.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524054|ref|ZP_03004149.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867775|ref|ZP_03079776.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273491|ref|ZP_03206027.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554199|ref|YP_002284612.1| hypothetical protein UUR10_0208 [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550410|ref|ZP_03771359.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551492|ref|ZP_03772438.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171903525|gb|EDT49814.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209495|gb|EDU06538.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018787|gb|EDU56827.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997879|gb|EDU66976.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659915|gb|EDX53295.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660630|gb|EDX53886.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198250011|gb|EDY74791.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209541700|gb|ACI59929.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225379307|gb|EEH01672.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379564|gb|EEH01926.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 335 Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 88/335 (26%), Positives = 157/335 (46%), Gaps = 38/335 (11%) Query: 35 TSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPA 94 + QI+ WIY + I DF S+IS+ + +L ++F I + + + DG+ K+ L Sbjct: 33 SKQIYSWIYQKRIFDFDKFSNISKSNQSILKENFDNNLLTINEYQSNSDGSIKFKLLTTI 92 Query: 95 RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLA 154 I + I + G L + G +K + NL+ E++LQ LL Sbjct: 93 NLIINCM------IIKFENGFLIKINPFGI---------NDKKEIINLSTNELVLQTLLV 137 Query: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSK 214 + L +G KI+N+++ G + L N + V ++I +D GL+ K Sbjct: 138 QQFLDQ------------HKLG-KITNVIVKGSQDSLLNMEAVSNFINIINDENGLNIGK 184 Query: 215 RRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDL--RNILVPINRKYPLEMLIDACR 271 R+I + TSG ++ + G+ + + L ISL+A ++ + + +L N+ + LI+ + Sbjct: 185 RKIVVWTSGVDVDLIKWGQLQNQIELIISLNASNSQVYKKLMLNKTNQNWSFIKLIEQIK 244 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 Y ++N R+ EY+++ IND+ A L+++LK I + LIP+N + SD Sbjct: 245 TYTEMTN-NRVVLEYLLIDKINDNLDYANELVELLKNILCYVLLIPYN----LNHKTSDN 299 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + I + S +R LDI + QLK Sbjct: 300 LEEFFNILSINKIRISKRVRKSNDLDI--SFTQLK 332 >gi|227885422|ref|ZP_04003227.1| conserved hypothetical protein [Escherichia coli 83972] gi|227837605|gb|EEJ48071.1| conserved hypothetical protein [Escherichia coli 83972] Length = 80 Score = 89.4 bits (220), Expect = 8e-16, Method: Composition-based stats. Identities = 43/77 (55%), Positives = 53/77 (68%), Gaps = 7/77 (9%) Query: 73 PEIVDEKISCDGTRKWLLRFPA-RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131 PEIV + IS DGTRKW++R + C+ ETVYIP+ RGTLCVSSQ GC+L CSFC Sbjct: 9 PEIVSQDISADGTRKWVVRVASGSCV------ETVYIPQGGRGTLCVSSQAGCALDCSFC 62 Query: 132 YTGTQKLVRNLTAEEIL 148 TG Q +LTA E++ Sbjct: 63 STGKQGFNSDLTAAEVI 79 >gi|218681469|ref|ZP_03529356.1| hypothetical protein RetlC8_22681 [Rhizobium etli CIAT 894] Length = 94 Score = 89.4 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 34/73 (46%), Positives = 56/73 (76%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K SLIG+ REE+ AL + G+ ++ ++MR +Q+W WIYVRG+ DF M+++++++R +L Sbjct: 22 EKPSLIGLSREEMAAALREKGVAEKQIKMRVAQLWNWIYVRGVSDFDHMTNVAKDMREML 81 Query: 65 NQHFSIIYPEIVD 77 QHF+I PEIV+ Sbjct: 82 KQHFTIARPEIVE 94 >gi|294670880|ref|ZP_06735736.1| hypothetical protein NEIELOOT_02584 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307367|gb|EFE48610.1| hypothetical protein NEIELOOT_02584 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 120 Score = 88.6 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 4/99 (4%) Query: 269 ACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 ACR Y L A R +TFEYVML GIND A L+ +++ +P K NLIPFNP+P Y Sbjct: 3 ACRRY--LVKAPRDFVTFEYVMLDGINDKAEHARELLALVRDVPCKFNLIPFNPFPNSGY 60 Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 S ++I F + ++++G +R RG DI AACGQL Sbjct: 61 ERSSSENIRIFRDILQQAGLVVTVRKTRGDDIDAACGQL 99 >gi|163781579|ref|ZP_02176579.1| hypothetical protein HG1285_01813 [Hydrogenivirga sp. 128-5-R1-1] gi|159882799|gb|EDP76303.1| hypothetical protein HG1285_01813 [Hydrogenivirga sp. 128-5-R1-1] Length = 274 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 63/209 (30%), Positives = 108/209 (51%), Gaps = 31/209 (14%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 TLCVS+QVGC + C FC +G + L+RNL+ EEI+ Q L R P E Sbjct: 34 TLCVSTQVGCHVRCGFCASGRRGLIRNLSEEEIVSQYELVR------PKFE--------- 78 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF-VPNIARVGE 233 + I + G+GEPL N+D+V+ + + LS R++ T+G+ + N+ + Sbjct: 79 ----VRRIAVAGIGEPLANWDSVRGAFYRFKE---LSL---RVSFYTTGYPLKNLRELLH 128 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR-HYPGLSNARR--ITFEYVMLK 290 +++S+H++ R L+P L LID R P L+ +R ++ Y+++K Sbjct: 129 MPHGGVSLSIHSLDRSTRKELMPYAGD--LGRLIDFLRGELPSLTGKKRKKVSLAYLLIK 186 Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFN 319 G+NDS + + L K+ + + + L+ +N Sbjct: 187 GVNDSEDELIELGKLARELGVGVTLLYYN 215 >gi|146319329|ref|YP_001199041.1| Fe-S-cluster redox protein [Streptococcus suis 05ZYH33] gi|145690135|gb|ABP90641.1| Predicted Fe-S-cluster redox enzyme [Streptococcus suis 05ZYH33] Length = 140 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 47/114 (41%), Positives = 70/114 (61%), Gaps = 4/114 (3%) Query: 257 INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKIN 314 INRK+P+E+L +A Y ++N RR+TFEY+ML +ND A L + K I + IN Sbjct: 3 INRKFPIEVLFEAIEDYIKVTN-RRVTFEYIMLNEVNDGVEQAQELADLTKNIRKLSYIN 61 Query: 315 LIPFNP-WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 LIP+NP +Y S ++ + F + +K++G + +R G DI AACGQL+S Sbjct: 62 LIPYNPVSEHDQYSRSTKERTLAFFDVLKKNGVNCVVRQEHGTDIDAACGQLRS 115 >gi|255640205|gb|ACU20393.1| unknown [Glycine max] Length = 271 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 54/140 (38%), Positives = 79/140 (56%), Gaps = 25/140 (17%) Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168 P R TLC+SSQVGC + C+FC TG+ NL++ EI +E Sbjct: 117 PGGLRATLCISSQVGCKMGCNFCATGSMGFKNNLSSGEI-------------------VE 157 Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF--SKRRITLSTSGFVP 226 +V S +I N+V MGMGEPL N+ V +++ I + GL F S +RIT+ST G + Sbjct: 158 QLVHASTFSQIRNVVFMGMGEPLNNYSAVVEAVRIMT---GLPFQLSSKRITISTVGIIH 214 Query: 227 NIARVGEEI-GVMLAISLHA 245 I ++ +++ G+ LA+SLHA Sbjct: 215 AINKLHDDLPGLNLAVSLHA 234 >gi|330975901|gb|EGH75967.1| hypothetical protein PSYAP_04494 [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 120 Score = 85.9 bits (211), Expect = 9e-15, Method: Composition-based stats. Identities = 42/86 (48%), Positives = 54/86 (62%) Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSE 339 R +T EY MLK IND A+ +I++LK P KINLIPFNP+P Y I F + Sbjct: 1 RVLTIEYTMLKDINDKVEHAVEMIELLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQD 60 Query: 340 CIKRSGYSSPIRTPRGLDILAACGQL 365 + ++GY+ +RT RG DI AACGQL Sbjct: 61 LLHQAGYNVTVRTTRGEDIDAACGQL 86 >gi|270593980|ref|ZP_06221492.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae HK1212] gi|270318367|gb|EFA29514.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae HK1212] Length = 129 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 45/102 (44%), Positives = 59/102 (57%), Gaps = 2/102 (1%) Query: 266 LIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPG 323 +ID+ Y +SNA ++T EYVML +ND A L ++LK P KINLIP+NP+P Sbjct: 1 MIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGIEHAHQLAEVLKNTPCKINLIPWNPFPE 60 Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 Y S I F + + G++ IR RG DI AACGQL Sbjct: 61 APYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAACGQL 102 >gi|13357773|ref|NP_078047.1| hypothetical protein UU214 [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170761929|ref|YP_001752296.1| hypothetical protein UPA3_0221 [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|183508786|ref|ZP_02958251.1| conserved hypothetical protein [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|11356788|pir||H82920 conserved hypothetical UU214 [imported] - Ureaplasma urealyticum gi|6899181|gb|AAF30622.1|AE002120_14 conserved hypothetical [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827506|gb|ACA32768.1| conserved hypothetical protein [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|182675731|gb|EDT87636.1| conserved hypothetical protein [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 336 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 96/356 (26%), Positives = 168/356 (47%), Gaps = 43/356 (12%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 EL+E L K+G+ + QI+ WIY + I +F S+I++ +L ++FS + Sbjct: 17 NELKEELFKLGLKS----FISKQIYSWIYQKRIFNFDKFSNIAKNNVIILKENFSNNLLK 72 Query: 75 IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134 I + + DG+ K+ I I + I K+ G L + G + Sbjct: 73 INSYQSNSDGSIKFEFLTDKNLI-----INCMIIKFKN-GFLIKINPFGINF-------- 118 Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194 +K + NL+ E++LQ+LL + L +G I+N+++ G+ + L N Sbjct: 119 -KKEIINLSTNELVLQILLIQQFLDQ------------RKLGN-ITNVIIKGLQDSLLNM 164 Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDL--- 250 D V ++I ++ GL+ KR+I + TSG ++ + G+ + + L IS++A SN L Sbjct: 165 DVVSNFINIINNENGLNIGKRKIAVWTSGINVDLIKWGQLQNQIELIISMNA-SNSLIYQ 223 Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310 + +L +N+ + LI+ + Y ++N R+ EY+++ IND A L+++LK I Sbjct: 224 KIMLKKLNQNWSFLKLIEQIKAYTKITN-NRVVLEYLLIDKINDDLNYANELVELLKNIL 282 Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + LIP+N Y S D + + S IR LDI + QLK Sbjct: 283 CYVLLIPYNL---NNYRTSANLDDFFNILSVNKIRISKRIRKSNDLDI--SFKQLK 333 >gi|186701974|ref|ZP_02971605.1| conserved hypothetical protein [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|186700738|gb|EDU19020.1| conserved hypothetical protein [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 336 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 96/356 (26%), Positives = 168/356 (47%), Gaps = 43/356 (12%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 EL+E L K+G+ + QI+ WIY + I +F S+I++ +L ++FS + Sbjct: 17 NELKEELFKLGLKS----FISKQIYSWIYQKRIFNFDKFSNIAKNNVIILKENFSNNLLK 72 Query: 75 IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134 I + + DG+ K+ I I + I K+ G L + G + Sbjct: 73 INSYQSNSDGSIKFEFLTDKNLI-----INCMIIKFKN-GFLIKINPFGINF-------- 118 Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194 +K + NL+ E++LQ+LL + L +G I+N+++ G+ + L N Sbjct: 119 -KKEIINLSTNELVLQILLIQQFLDQ------------RKLGN-ITNVIIKGLQDILLNM 164 Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDL--- 250 D V ++I ++ GL+ KR+I + TSG ++ + G+ + + L IS++A SN L Sbjct: 165 DVVSNFINIINNENGLNIGKRKIAVWTSGINVDLIKWGQLQNQIELIISMNA-SNSLIYQ 223 Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310 + +L +N+ + LI+ + Y ++N R+ EY+++ IND A L+++LK I Sbjct: 224 KIMLKKLNQNWSFLKLIEQIKAYTKITN-NRVVLEYLLIDKINDDLNYANELVELLKNIL 282 Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + LIP+N Y S D + + S IR LDI + QLK Sbjct: 283 CYVLLIPYNL---NNYRTSANLDDFFNILSVNKIRISKRIRKSNDLDI--SFKQLK 333 >gi|289548559|ref|YP_003473547.1| radical SAM protein [Thermocrinis albus DSM 14484] gi|289182176|gb|ADC89420.1| Radical SAM domain protein [Thermocrinis albus DSM 14484] Length = 270 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 72/268 (26%), Positives = 120/268 (44%), Gaps = 37/268 (13%) Query: 103 IETVYIPEKSRG-TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF 161 IE V+ RG TLCVS+QVGC++ C+FC +G+ L+RNL+ +EI +Q L + L Sbjct: 25 IEAVFY----RGDTLCVSTQVGCAVGCAFCLSGSAGLLRNLSEDEIYMQYFLLKPFL--- 77 Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS-IASDSMGLSFSKRRITLS 220 I + G+GEPL N+ NV + + +G++F + Sbjct: 78 ----------------PIRRVAFAGIGEPLMNYRNVLGAFERFKREGLGVTF------YT 115 Query: 221 TSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY---PGLS 277 T + ++ + + + ISLH + LR L+P LE LI + Y Sbjct: 116 TGHPIKHLPSLLDLPHRGVTISLHTLDPSLRKKLLP--HAGDLEELIALLKDYSKKISKR 173 Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTF 337 +I+ Y++LKG+NDSP + +++K + L+ +N G + ++ Sbjct: 174 KKGKISLAYLLLKGVNDSPEEIKAFGRLVKELGFSATLLYYND-TGMGFQAVTPEEYSKA 232 Query: 338 SECIKRSGYSSPIRTPRGLDILAACGQL 365 ++ G + T D L CG L Sbjct: 233 FLLLRSMGVRVTLSTRYRRDPLGGCGTL 260 >gi|171920082|ref|ZP_02931510.1| conserved hypothetical protein [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|171902433|gb|EDT48722.1| conserved hypothetical protein [Ureaplasma parvum serovar 1 str. ATCC 27813] Length = 336 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 95/355 (26%), Positives = 168/355 (47%), Gaps = 43/355 (12%) Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75 EL+E L ++G+ + QI+ WIY + I +F S+I++ +L ++FS +I Sbjct: 18 ELKEELFELGLKS----FISKQIYSWIYQKRIFNFDKFSNIAKNNVIILKENFSNNLLKI 73 Query: 76 VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135 + + DG+ K+ I I + I K+ G L + G + Sbjct: 74 NSYQSNSDGSIKFEFLTDKNLI-----INCMIIKFKN-GFLIKINPFGINF--------- 118 Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195 +K + NL+ E++LQ+LL + L +G I+N+++ G+ + L N D Sbjct: 119 KKEIINLSTNELVLQILLIQQFLDQ------------RKLGN-ITNVIIKGLQDSLLNMD 165 Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDL---R 251 V ++I ++ GL+ KR+I + TSG ++ + G+ + + L IS++A SN L + Sbjct: 166 VVSNFINIINNENGLNIGKRKIAVWTSGINVDLIKWGQLQNQIELIISMNA-SNSLIYQK 224 Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311 +L +N+ + LI+ + Y ++N R+ EY+++ IND A L+++LK I Sbjct: 225 IMLKKLNQNWSFLKLIEQIKAYTKITN-NRVVLEYLLIDKINDDLNYANELVELLKNILC 283 Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + LIP+N Y S D + + S IR LDI + QLK Sbjct: 284 YVLLIPYNL---NNYRTSANLDDFFNILSVNKIRISKRIRKSNDLDI--SFKQLK 333 >gi|15610017|ref|NP_217396.1| hypothetical protein Rv2880c [Mycobacterium tuberculosis H37Rv] gi|148662724|ref|YP_001284247.1| hypothetical protein MRA_2905 [Mycobacterium tuberculosis H37Ra] gi|1403400|emb|CAA98356.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv] gi|148506876|gb|ABQ74685.1| hypothetical protein MRA_2905 [Mycobacterium tuberculosis H37Ra] Length = 275 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 57/173 (32%), Positives = 83/173 (47%), Gaps = 29/173 (16%) Query: 20 ALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV--D 77 A+ ++G+P R Q+ Y R I D + M+D+ VR + ++P ++ Sbjct: 30 AVAELGLPA----FRAKQLAHQYYGRLIADPRQMTDLPAAVRDRIA---GAMFPNLLTAS 82 Query: 78 EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135 I+CD TRK L R + G + E+V + R T+C+SSQ GC + C FC TG Sbjct: 83 ADITCDAGQTRKTLWR----AVDGTM-FESVLMRYPRRNTVCISSQAGCGMACPFCATGQ 137 Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 L RNL+ EIL QV + L D G ++SN+V MGMG Sbjct: 138 GGLTRNLSTAEILEQVRAGAAALRD-------------DFGDRLSNVVFMGMG 177 >gi|325295135|ref|YP_004281649.1| Radical SAM domain protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065583|gb|ADY73590.1| Radical SAM domain protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 270 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 76/265 (28%), Positives = 127/265 (47%), Gaps = 40/265 (15%) Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175 LC+S+QVGC + C FC +G++ RNLT EI+ Q L R +L Sbjct: 35 LCISTQVGCPIGCIFCASGSKGFFRNLTFAEIVTQYELLRDIL----------------- 77 Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF-VPNIARVGEE 234 I I + G+GEP N NV+K+++ + GL ++T+ST+G+ + N ++ Sbjct: 78 --PIKGIAIAGIGEPALNISNVEKAVNYFRNE-GL-----KVTISTAGYPLENFKKLIRL 129 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC-RHYPGLSNARRITFE--YVMLKG 291 L +S+H + N R + +K LE L++A H S++RR F+ Y+++K Sbjct: 130 NHNGLTLSVHGILNKTREKI--FKKKENLEELLNAVDEHLSESSSSRRKKFQLGYLLIKD 187 Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPG--CEYLCSD--QKDIVTFSECIKRSGYS 347 +ND + L ++ K + L+ +N G E + D +K + E R S Sbjct: 188 LNDDLENLRLLGELAKKYRFTVMLMMYNKVDGFDLEPVTKDEYEKAFLFLREMGVRVTLS 247 Query: 348 SPIRTPRGLDILAACGQLKSLSKRI 372 + R +D L CG L ++ +RI Sbjct: 248 NRFR----IDKLGGCGTL-TVGRRI 267 >gi|218662568|ref|ZP_03518498.1| hypothetical protein RetlI_25657 [Rhizobium etli IE4771] Length = 72 Score = 79.3 bits (194), Expect = 9e-13, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 42/57 (73%) Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPR 377 WPG Y CSD + I F++ I +GY+SPIRTPRG DILAACGQLKS S+R+ K R Sbjct: 1 WPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAACGQLKSESERMRKTER 57 >gi|325849044|ref|ZP_08170536.1| ribosomal RNA large subunit methyltransferase N family protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480289|gb|EGC83352.1| ribosomal RNA large subunit methyltransferase N family protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 126 Score = 79.3 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 42/118 (35%), Positives = 69/118 (58%), Gaps = 10/118 (8%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 EELE+ L +G + R Q+++ I+V I DF M+D+S+++R L+++F + Sbjct: 11 EELEKIFLDLGFK----KFRAKQVFRQIHVNKINDFSKMTDLSKKMREDLDKYFYFPKIK 66 Query: 75 IVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131 +V E K + D T+K+L + I IE V++ +R T+C+SSQVGC + C FC Sbjct: 67 VVKEFKSNLDKTKKYLFELDDKNI-----IEAVFMEYNNRNTICISSQVGCRMGCKFC 119 >gi|291287083|ref|YP_003503899.1| Radical SAM domain protein [Denitrovibrio acetiphilus DSM 12809] gi|290884243|gb|ADD67943.1| Radical SAM domain protein [Denitrovibrio acetiphilus DSM 12809] Length = 256 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 96/204 (47%), Gaps = 46/204 (22%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 +ETVY GTLC+S+Q GC + C FC +G L RNL+++E+ QV L + Sbjct: 16 LETVYYES---GTLCISTQAGCRMACPFCASGRVGLKRNLSSDELFTQVELHK------- 65 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 G I + + G+GEPL NF+ VK+ + K +S + Sbjct: 66 -------------GNDIKRVTLSGIGEPLDNFEVVKEFI-----------KKSGYPVSVT 101 Query: 223 GFVPNIARVGEEI-----GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY---P 274 VP+ ++ E + GVML S HA ++ R L+P + L+ + A Sbjct: 102 TSVPDTEKLKELLKLSHNGVML--SFHAGFDETRKKLIP--KACQLDEIFHAVSEVWSEI 157 Query: 275 GLSNARRITFEYVMLKGINDSPRD 298 ++ +++ F Y++L GINDS + Sbjct: 158 SVNKRKKVGFNYMLLDGINDSAEE 181 >gi|319789396|ref|YP_004151029.1| Radical SAM domain protein [Thermovibrio ammonificans HB-1] gi|317113898|gb|ADU96388.1| Radical SAM domain protein [Thermovibrio ammonificans HB-1] Length = 271 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 78/260 (30%), Positives = 122/260 (46%), Gaps = 43/260 (16%) Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175 LCVSSQVGC + C+FC +G + L RNL+AEEI Q L L G+ P Sbjct: 35 LCVSSQVGCPVGCAFCASGLKGLKRNLSAEEIYAQYSL---LKGELP------------- 78 Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR--RITLSTSGF-VPNIARVG 232 I I + G+GEP N D+V +++ F K ++T+S++G + ++ Sbjct: 79 ---IRGIAIAGIGEPALNADSVVEAIG--------RFKKEGLKVTVSSTGCDLEGFRKLV 127 Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC-RHYPGLSNARRITFE--YVML 289 E L IS+HAV +R L + K P+E +++ H S++RR F+ Y+++ Sbjct: 128 EAPHNGLTISVHAVKPHIRERLFKL--KQPIEKVLEVVEEHLERSSSSRRKRFQLGYLLI 185 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY--LCSD--QKDIVTFSECIKRSG 345 KG+ND L ++ K + L+ +N G + L + +K + E R Sbjct: 186 KGVNDDEESLKLLAELAKRHRFTVMLMAYNEVEGLPFKGLSEEEYEKAFLKLRELGVRVT 245 Query: 346 YSSPIRTPRGLDILAACGQL 365 S+ R D L CG L Sbjct: 246 LSNRFRR----DKLGGCGTL 261 >gi|325918563|ref|ZP_08180675.1| hypothetical protein XVE_4704 [Xanthomonas vesicatoria ATCC 35937] gi|325535220|gb|EGD07104.1| hypothetical protein XVE_4704 [Xanthomonas vesicatoria ATCC 35937] Length = 126 Score = 76.6 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 38/93 (40%), Positives = 54/93 (58%), Gaps = 8/93 (8%) Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGI--------PAKINLIPFNPWPGCEYLCSDQKD 333 +TFEY ++KGIND P A L ++++ K+NLIPFNP+PG Y S + + Sbjct: 7 VTFEYTLMKGINDQPEHARQLARLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETE 66 Query: 334 IVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 I F + + + + +R RG DI AACGQLK Sbjct: 67 IRAFQKILLDAQVLTMVRRTRGDDIDAACGQLK 99 >gi|313625007|gb|EFR94900.1| ribosomal RNA large subunit methyltransferase N [Listeria innocua FSL J1-023] Length = 130 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 80/141 (56%), Gaps = 13/141 (9%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K S+ G+ +L E L G + R +Q+W W+Y + ++ F+ MS++ +E L Sbjct: 1 MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56 Query: 64 LNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L +F + + ++V E S DGT K+L + + IETV + ++ ++CV++Q Sbjct: 57 LTANFVMNTLEEQVVQE--STDGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQ 109 Query: 122 VGCSLTCSFCYTGTQKLVRNL 142 VGC++ C+FC +G K R+L Sbjct: 110 VGCNIGCTFCASGLLKKSRDL 130 >gi|300858725|ref|YP_003783708.1| hypothetical protein cpfrc_01308 [Corynebacterium pseudotuberculosis FRC41] gi|300686179|gb|ADK29101.1| hypothetical protein cpfrc_01308 [Corynebacterium pseudotuberculosis FRC41] Length = 213 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 85/175 (48%), Gaps = 24/175 (13%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH-FSIIYP 73 EE AL ++G+P + R +QI + Y R D + M+D+ VR + + F ++ Sbjct: 58 EERISALKELGLP----KFRANQIARHYYGRLEADPRTMTDLPAGVREKVQEKLFPVLMN 113 Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133 I + T+K L + + +E+V + +R TLC+SSQ GC + C FC T Sbjct: 114 PIRAIETDAGETQKTLWQLHDGTL-----LESVLMRYPNRATLCISSQAGCGMACPFCAT 168 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 G L RNL+ EI+ QV A + + + G ++SNIV MGMG Sbjct: 169 GQGGLDRNLSTAEIVDQVRAASATMN--------------AEGGRLSNIVFMGMG 209 >gi|295113298|emb|CBL31935.1| hypothetical protein [Enterococcus sp. 7L76] Length = 114 Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 41/104 (39%), Positives = 61/104 (58%), Gaps = 3/104 (2%) Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDI 334 N RR+TFEY+ML +ND P A L +L+ + +NLIP+NP +Y S ++ + Sbjct: 11 NNRRVTFEYIMLSQVNDRPEHAQQLADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAV 70 Query: 335 VTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQ 378 + F + +K++G + IR G DI AACGQL+S + KV Q Sbjct: 71 LKFYDVLKKNGINCVIRKEHGTDIDAACGQLRSKQMKKEKVKNQ 114 >gi|313620453|gb|EFR91838.1| ribosomal RNA large subunit methyltransferase N [Listeria innocua FSL S4-378] Length = 129 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 79/140 (56%), Gaps = 13/140 (9%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K S+ G+ +L E L G + R +Q+W W+Y + ++ F+ MS++ +E L Sbjct: 1 MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56 Query: 64 LNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L +F + + ++V E S DGT K+L + + IETV + ++ ++CV++Q Sbjct: 57 LTANFVMNTLEEQVVQE--STDGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQ 109 Query: 122 VGCSLTCSFCYTGTQKLVRN 141 VGC++ C+FC +G K R+ Sbjct: 110 VGCNIGCTFCASGLLKKSRD 129 >gi|315281046|ref|ZP_07869770.1| ribosomal RNA large subunit methyltransferase N [Listeria marthii FSL S4-120] gi|313615310|gb|EFR88731.1| ribosomal RNA large subunit methyltransferase N [Listeria marthii FSL S4-120] Length = 128 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 77/139 (55%), Gaps = 13/139 (9%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K S+ G+ L E L G + R +Q+W W+Y + ++ F+ MS++ +E L Sbjct: 1 MEKSSIYGLTWTNLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56 Query: 64 LNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L +F + + ++V E S DGT K+L + + IETV + ++ ++CV++Q Sbjct: 57 LTANFVMNTLEEQVVQE--SADGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQ 109 Query: 122 VGCSLTCSFCYTGTQKLVR 140 VGC++ C+FC +G K R Sbjct: 110 VGCNIGCTFCASGLLKKSR 128 >gi|313610614|gb|EFR85708.1| ribosomal RNA large subunit methyltransferase N [Listeria monocytogenes FSL F2-208] Length = 129 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 78/139 (56%), Gaps = 13/139 (9%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K S+ G+ +L E L G + R +Q+W W+Y + ++ F+ MS++ +E L Sbjct: 1 MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56 Query: 64 LNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L +F + + ++V E S DGT K+L + + IETV + ++ ++CV++Q Sbjct: 57 LTANFVMNTLEEQVVQE--SADGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQ 109 Query: 122 VGCSLTCSFCYTGTQKLVR 140 VGC++ C+FC +G K R Sbjct: 110 VGCNIGCTFCASGLLKKSR 128 >gi|190150593|ref|YP_001969118.1| UPF0063 protein yfgB [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189915724|gb|ACE61976.1| UPF0063 protein yfgB [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 110 Score = 73.9 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 36/84 (42%), Positives = 49/84 (58%) Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341 +T EYV+L +ND A L ++LK P KINLIP+NP+P Y S + F + + Sbjct: 1 MTIEYVLLDHVNDGTEHAHQLAEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTL 60 Query: 342 KRSGYSSPIRTPRGLDILAACGQL 365 G++ +R RG DI AACGQL Sbjct: 61 MEYGFTVIVRKTRGDDIDAACGQL 84 >gi|226498404|ref|NP_001141738.1| hypothetical protein LOC100273870 [Zea mays] gi|194705752|gb|ACF86960.1| unknown [Zea mays] Length = 105 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 43/110 (39%), Positives = 64/110 (58%), Gaps = 7/110 (6%) Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MG+P N DNV K+ +I G FS R++T+STSGFVP + ++ A SL+A Sbjct: 1 MGQPFHNIDNVIKASAIMVHEQG-HFSPRKVTVSTSGFVPQLG-----TQLLAAASLNAR 54 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF-EYVMLKGINDS 295 ++++RN ++ INRK L +L+ R L ++I EY ML G+N S Sbjct: 55 TDEVRNWIMTINRKENLNLLLGTLRGELNLRKKKQIVLSEYAMLSGVNGS 104 >gi|168027205|ref|XP_001766121.1| predicted protein [Physcomitrella patens subsp. patens] gi|162682764|gb|EDQ69180.1| predicted protein [Physcomitrella patens subsp. patens] Length = 180 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 87/190 (45%), Gaps = 27/190 (14%) Query: 81 SCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVR 140 S DGT + LL + V I Y SR T CV GC+L C+FC TG R Sbjct: 12 SKDGTVQVLLSLEDDRLVEAVGIPVTYRKGGSRLTDCV----GCALNCTFCCTGKDGFAR 67 Query: 141 NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKS 200 NL + EI+ + + + LL + ++N+V MGMGEPL N V Sbjct: 68 NLKSHEIVDRACILQDLL-----------------RKPMTNMVFMGMGEPLINLGAVLDD 110 Query: 201 LSIASDSMGL-----SFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNIL 254 +D + + +++ + + T G + I R+ + ML +SLHA + LR+ L Sbjct: 111 HLSKTDVLYIIIQESKTAQQMMVILTVGILNTIRRLAPHKFHSMLVVSLHAPNQGLRSKL 170 Query: 255 VPINRKYPLE 264 VP +Y L+ Sbjct: 171 VPSANRYSLD 180 >gi|299535923|ref|ZP_07049243.1| ribosomal RNA large subunit methyltransferase N [Lysinibacillus fusiformis ZC1] gi|298728675|gb|EFI69230.1| ribosomal RNA large subunit methyltransferase N [Lysinibacillus fusiformis ZC1] Length = 94 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 54/89 (60%) Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341 ++FEY ++ G NDS A L ++KGI +NLIP N P +Y+ + + I F + + Sbjct: 1 MSFEYGLMSGENDSVEIAEELSALIKGIKCHVNLIPVNYVPERDYVRTSRSQIFAFEKTL 60 Query: 342 KRSGYSSPIRTPRGLDILAACGQLKSLSK 370 K++G + IR +G DI AACGQL++ + Sbjct: 61 KKNGINVTIRREQGSDIAAACGQLRAQER 89 >gi|218673229|ref|ZP_03522898.1| hypothetical protein RetlG_17291 [Rhizobium etli GR56] Length = 75 Score = 70.1 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 40/58 (68%) Query: 320 PWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPR 377 P P Y CS + I F++ I +GY+SPIRTPRG DILAACGQLKS S+R+ K R Sbjct: 3 PGPAPNYQCSGWEQIEKFADFINSAGYASPIRTPRGRDILAACGQLKSESERMRKTER 60 >gi|154492443|ref|ZP_02032069.1| hypothetical protein PARMER_02077 [Parabacteroides merdae ATCC 43184] gi|154087668|gb|EDN86713.1| hypothetical protein PARMER_02077 [Parabacteroides merdae ATCC 43184] Length = 260 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 65/213 (30%), Positives = 89/213 (41%), Gaps = 35/213 (16%) Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172 R + VS+ GC + C FC TG K RNLTA+EI+ QV A G F C+ E Sbjct: 58 RWMIGVSTMSGCPVRCKFCATGNMKRYRNLTADEIVGQVEFAIEQAG-FDPCDANE---- 112 Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232 I MGEP N + VK+++ S+ I +T +V I G Sbjct: 113 -------FKINYTRMGEPFLNIEAVKEAIGRISE----------IYPNTHHYVSTIGIKG 155 Query: 233 EEI-----GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 + V L ISLH+ + RN L+P YP +M I+ SN + + Sbjct: 156 SDFSFVKGNVTLQISLHSFDEEKRNWLIP----YPKKMSIEELGRIRTESNLKTT----I 207 Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 L +N+S D L K + L P NP Sbjct: 208 NLTLVNESDFDTEKLEKYFDKEYFFVKLSPINP 240 >gi|217074618|gb|ACJ85669.1| unknown [Medicago truncatula] Length = 221 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/117 (36%), Positives = 56/117 (47%), Gaps = 20/117 (17%) Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168 P R TLC+SSQVGC + C FC TG+ NL++ EI +E Sbjct: 119 PGGLRATLCISSQVGCKMGCKFCATGSMGFKSNLSSGEI-------------------VE 159 Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS-MGLSFSKRRITLSTSGF 224 +V S I N+V MGMGEPL N+ V +S+ I S S LS + R+ F Sbjct: 160 QLVHASAFAHIRNVVFMGMGEPLNNYSAVVESVRIMSGSPFQLSLKRYRLNCWHHSF 216 >gi|255030761|ref|ZP_05302712.1| hypothetical protein LmonL_19616 [Listeria monocytogenes LO28] Length = 137 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 9/114 (7%) Query: 47 IRDFQGMSDISQEVRHLLNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIE 104 ++ F+ MS++ +E LL +F + + ++V E S DGT K+L + + IE Sbjct: 3 VKTFEEMSNVPKETIELLTANFVMNTLEEQVVQE--STDGTTKYLFKLSDGNL-----IE 55 Query: 105 TVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLL 158 TV + ++ ++CV++QVGC++ C+FC +G K R+LTA EI+ Q++ + L Sbjct: 56 TVMMKQEYGLSVCVTTQVGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYL 109 >gi|294955468|ref|XP_002788520.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] gi|239904061|gb|EER20316.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] Length = 242 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 84/186 (45%), Gaps = 25/186 (13%) Query: 214 KRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 +R IT+ST G +P I + + GV LA+SLHA + LR +VP + + ++ L+ A Sbjct: 9 QRCITVSTVGVIPRIRSLAHDASGVKLALSLHAPTQALREKIVPSAKAWSIDELMAAVDE 68 Query: 273 YPGLSNARRIT-----------------FEYVMLKGINDSPRDALNLIKILKGIPAKINL 315 Y S A R+ EYV+++ +ND+ A L ++K A +N Sbjct: 69 Y---SEASRVAGRPDGSGGGGRKKGSVMIEYVVIRDVNDTEECAHQLGVLMKNRKAVVNF 125 Query: 316 IPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI--RTPRGLDILAACGQLKSLSKRIP 373 IP+N + VT I + Y + R G DI AACGQL KR Sbjct: 126 IPYNAVDNGSNFEPPLESSVTRMVSILKDVYGVRVYYRRHHGRDIDAACGQLA--KKRPR 183 Query: 374 KVPRQE 379 VP E Sbjct: 184 MVPDLE 189 >gi|194698458|gb|ACF83313.1| unknown [Zea mays] gi|194698542|gb|ACF83355.1| unknown [Zea mays] gi|194707874|gb|ACF88021.1| unknown [Zea mays] gi|195621242|gb|ACG32451.1| hypothetical protein [Zea mays] Length = 89 Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 6/85 (7%) Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MG+P N DNV K+ +I G FS R++T+STSGFVP + ++ A SL+A Sbjct: 1 MGQPFHNIDNVIKASAIMVHEQG-HFSPRKVTVSTSGFVPQLG-----TQLLAAASLNAR 54 Query: 247 SNDLRNILVPINRKYPLEMLIDACR 271 ++++RN ++ INRK L +L+ R Sbjct: 55 TDEVRNWIMTINRKENLNLLLGTLR 79 >gi|325116881|emb|CBZ52434.1| hypothetical protein NCLIV_022230 [Neospora caninum Liverpool] Length = 157 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 44/125 (35%), Positives = 64/125 (51%), Gaps = 20/125 (16%) Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 G +R L+A+EI QVL G KI ++ +MGMGEPL N Sbjct: 51 GKSGFLRQLSADEITDQVLF------------------FLRQGIKIDSVSLMGMGEPLAN 92 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRN 252 V +L I +D + +FS R++ +ST G +P I ++ EE V LA SLH+ + RN Sbjct: 93 -PKVFDALRILTDPLLFNFSARKLAVSTLGVLPGIKKLTEEHPQVNLAFSLHSPFPEERN 151 Query: 253 ILVPI 257 +LV + Sbjct: 152 LLVSL 156 >gi|218461239|ref|ZP_03501330.1| hypothetical protein RetlK5_17732 [Rhizobium etli Kim 5] Length = 73 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 37/52 (71%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDI 56 +K SLIG+ REE+ AL + G+ + ++MR +Q+W IYVRG+ DF M+++ Sbjct: 22 EKPSLIGLSREEMAAALTEKGVAENQIKMRVAQLWNCIYVRGVSDFDRMTNV 73 >gi|81999761|sp|Q5UP06|YR756_MIMIV RecName: Full=Uncharacterized protein R756 gi|55417366|gb|AAV51016.1| putative Fe-S-cluster redox enzyme [Acanthamoeba polyphaga mimivirus] Length = 298 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 64/273 (23%), Positives = 113/273 (41%), Gaps = 41/273 (15%) Query: 118 VSSQVGCSLTCSFCY-TGT-QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175 +SS GC + C FC+ T T Q R+++ EE Q+ S + G E I V Sbjct: 37 LSSHNGCKMACKFCWLTATNQTNFRHVSIEEYANQLDTVLSHGKEIDG----ENSRIVRV 92 Query: 176 GRKISNIVMMGMGEPLC------NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIA 229 NI +M GE L N+D K L + S + ++ S +P + Sbjct: 93 -----NINLMSRGEALANKNLVNNYDKFHKELQYIINKYDYS----EMKMNVSTIMPKVV 143 Query: 230 RVGEEIGVM------LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283 + I + + SL++ + R +P + +Y E+ + R + ++ I Sbjct: 144 EHKKLIDIFGDRPVNIYYSLYSTNESFRKKWIPNSMRY--EIALRKLREFQKETD-NTIA 200 Query: 284 FEYVMLKGINDSPRDALNLIKILKGI---PAKINLIPFNPWPG-CEYLCSDQKDIVTFSE 339 F + +++ ND+ D ++ +I++ + K NL+ FNP P Y + + E Sbjct: 201 FHFAVIEDENDNLSDVQSMAEIIRSMNFSKTKFNLVRFNPHPSMSNYKEPSVEKLEKIYE 260 Query: 340 CIKRSGYSSPIRTPR-------GLDILAACGQL 365 ++ I+T R G D+LA+CG Sbjct: 261 ILQSVCNDETIKTNRSRIVPRIGQDVLASCGMF 293 >gi|311978166|ref|YP_003987286.1| putative radical SAM enzyme [Acanthamoeba polyphaga mimivirus] gi|308205034|gb|ADO18835.1| putative radical SAM enzyme [Acanthamoeba polyphaga mimivirus] Length = 298 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 64/273 (23%), Positives = 113/273 (41%), Gaps = 41/273 (15%) Query: 118 VSSQVGCSLTCSFCY-TGT-QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175 +SS GC + C FC+ T T Q R+++ EE Q+ S + G E I V Sbjct: 37 LSSHNGCKMACKFCWLTATNQTNFRHVSIEEYANQLDTVLSHGKEIDG----ENSRIVRV 92 Query: 176 GRKISNIVMMGMGEPLC------NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIA 229 NI +M GE L N+D K L + S + ++ S +P + Sbjct: 93 -----NINLMSRGEALANKNLVNNYDKFHKELQYIINKYDYS----EMKMNVSTIMPKVI 143 Query: 230 RVGEEIGVM------LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283 + I + + SL++ + R +P + +Y E+ + R + ++ I Sbjct: 144 EHKKLIDIFGDRPVNIYYSLYSTNESFRKKWIPNSMRY--EIALRKLREFQKETD-NTIA 200 Query: 284 FEYVMLKGINDSPRDALNLIKILKGI---PAKINLIPFNPWPG-CEYLCSDQKDIVTFSE 339 F + +++ ND+ D ++ +I++ + K NL+ FNP P Y + + E Sbjct: 201 FHFAVIEDENDNLSDVQSMAEIIRSMNFSKTKFNLVRFNPHPSMSNYKEPSVEKLEKIYE 260 Query: 340 CIKRSGYSSPIRTPR-------GLDILAACGQL 365 ++ I+T R G D+LA+CG Sbjct: 261 ILQSVCNDETIKTNRSRIVPRIGQDVLASCGMF 293 >gi|149922669|ref|ZP_01911096.1| hypothetical protein PPSIR1_19869 [Plesiocystis pacifica SIR-1] gi|149816466|gb|EDM75965.1| hypothetical protein PPSIR1_19869 [Plesiocystis pacifica SIR-1] Length = 291 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 68/256 (26%), Positives = 106/256 (41%), Gaps = 33/256 (12%) Query: 75 IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134 IV+E DG R++++ + +E V S LCVSSQVGC++ C FC +G Sbjct: 4 IVEEHREGDGNRRFVV-----GLDDGASVEAVLYRLDS---LCVSSQVGCAVGCPFCASG 55 Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194 L R L E+ QV R+ IE P + + + G+GEPL N Sbjct: 56 ANGLDRPLRLGELTGQVEAVRA---------HIEATDGPEAALALRRVTVSGVGEPLHNH 106 Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA-------ISLHAVS 247 + V + + + +L+TSG + R+GE + A S+HA Sbjct: 107 EPVAQFVRWCRE------RDMPASLTTSGG--PLRRLGEWLDPDAAPPHNGITFSIHAGR 158 Query: 248 NDLRNILVPINRKY-PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 R VP PL L+ S R++ Y++L +ND + ++ Sbjct: 159 EATRARTVPRGPALGPLFSLLGEAIPRLSRSRKRKLALAYLLLADLNDGDEEIDAFLERA 218 Query: 307 KGIPAKINLIPFNPWP 322 + KI+L +NP P Sbjct: 219 APLGVKIHLYRYNPVP 234 >gi|320158412|ref|YP_004190790.1| radical SAM domain-containing protein [Vibrio vulnificus MO6-24/O] gi|319933724|gb|ADV88587.1| radical SAM domain protein [Vibrio vulnificus MO6-24/O] Length = 274 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 27/146 (18%) Query: 118 VSSQVGCSLTCSFCYTGTQKLV-----RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172 +S+Q GC + C FC KL RNLTA+E++ QV A G P ED + Sbjct: 66 ISTQSGCPIKCKFC--AVNKLTARQGWRNLTADEMVAQVEWAIEQAGHDP--EDAQ---- 117 Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232 + I+ MGEP N NV +++ + + K RI +ST GF + R+ Sbjct: 118 ------LFRILFTRMGEPAMNVKNVVEAVR----RLKARYPKVRIQVSTIGFGKHSQRLV 167 Query: 233 EEI----GVMLAISLHAVSNDLRNIL 254 + + L S+H+ SN+ R L Sbjct: 168 NALYEFDNIELQFSIHSTSNEYRQWL 193 >gi|294942772|ref|XP_002783678.1| hypothetical protein Pmar_PMAR008379 [Perkinsus marinus ATCC 50983] gi|239896201|gb|EER15474.1| hypothetical protein Pmar_PMAR008379 [Perkinsus marinus ATCC 50983] Length = 188 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 66/153 (43%), Gaps = 22/153 (14%) Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT--------------- 283 LA+SLHA + LR +VP + + ++ L+ A Y S A R+ Sbjct: 2 LALSLHAPNQALREKIVPSAKAWSIDELMAAVDEY---SEASRVAGRPDGSGGGGRKKGS 58 Query: 284 --FEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341 EYV+++ +ND+ A L ++K A +N IP+N + VT I Sbjct: 59 VMIEYVVIRDVNDTEECAHQLGVLMKNRKAVVNFIPYNAVDNGSNFEPPLESSVTRMVSI 118 Query: 342 KRSGYSSPI--RTPRGLDILAACGQLKSLSKRI 372 + Y + R G DI AACGQL R+ Sbjct: 119 LKDVYGVRVYYRRHHGRDIDAACGQLAKKRPRM 151 >gi|158320747|ref|YP_001513254.1| radical SAM domain-containing protein [Alkaliphilus oremlandii OhILAs] gi|158140946|gb|ABW19258.1| Radical SAM domain protein [Alkaliphilus oremlandii OhILAs] Length = 455 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 63/253 (24%), Positives = 108/253 (42%), Gaps = 30/253 (11%) Query: 115 TLCVSSQVGCSLTCSFCYT--GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172 LC+ C++ C +C+ G K VR+L +EE+ G + I+ ++ Sbjct: 94 ALCLHIAHDCNIRCKYCFASQGDFKGVRSLMSEEV---------------GKKAIDFLLE 138 Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR-RITLSTSGFV---PNI 228 S GR+ + G GEPL NF+ VKK + S F+K R T++T+G + N+ Sbjct: 139 NSGGRRNLEVDFFG-GEPLMNFETVKKIVDYGR-SKEKEFNKNIRFTMTTNGVLLNDENM 196 Query: 229 ARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 A + E + V+L+I ND N+ IN + ++++ L R Sbjct: 197 AYINENMHNVVLSIDGRREVND--NMRYAINGQGTYDIIVPKFLKMAELRGHRNYYVRGT 254 Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSG-Y 346 K D +D L+L + G + ++ P P +Y S++ F + + S Y Sbjct: 255 FTKENLDFAKDVLHLADL--GFKS-TSMEPVVAEPHHDYAISEEDLQTVFDQYEELSKEY 311 Query: 347 SSPIRTPRGLDIL 359 I+ +G D Sbjct: 312 VKRIKEGKGFDFF 324 >gi|301119925|ref|XP_002907690.1| conserved hypothetical protein [Phytophthora infestans T30-4] gi|262106202|gb|EEY64254.1| conserved hypothetical protein [Phytophthora infestans T30-4] Length = 170 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 36/106 (33%), Positives = 49/106 (46%), Gaps = 16/106 (15%) Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP-GCEYLCSDQKDIVTFSECIKRSGY 346 ML G+NDS A L K+L+ +NLIP+N G ++ +DI F + R Y Sbjct: 1 MLAGVNDSIETAHTLGKLLQNRSVHVNLIPYNTTDVGAQFQSPSAEDIRAF-HAVLREPY 59 Query: 347 S--SPIRTPRGLDILAACGQL------------KSLSKRIPKVPRQ 378 + + IR G DI ACGQL + L R K PR+ Sbjct: 60 NLKATIRENHGTDIDGACGQLALKNKPDGSRDIEDLGPRRTKAPRK 105 >gi|310829213|ref|YP_003961570.1| radical SAM domain-containing protein [Eubacterium limosum KIST612] gi|308740947|gb|ADO38607.1| radical SAM domain-containing protein [Eubacterium limosum KIST612] Length = 449 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 40/183 (21%), Positives = 80/183 (43%), Gaps = 20/183 (10%) Query: 106 VYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCE 165 VY LC+ C+L C++C+ + E++L+ + + + Sbjct: 82 VYKNHDLVKALCLHVAHDCNLKCNYCFASQG----DFNGEKLLMPLEVGKKA-------- 129 Query: 166 DIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225 I+ ++ S R+ + G GEPL NFD VK+ + A K + T++T+G + Sbjct: 130 -IDFIIEQSKDRQNLEVDFFG-GEPLMNFDVVKELVDYARSKEESYHKKFKFTITTNGVL 187 Query: 226 ---PNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281 N+A + E + V+L++ ND N+ +N K +++ID + + ++ Sbjct: 188 LDDENMAYIDENMDNVVLSLDGRKCVND--NMRRTVNDKGSFDIIIDKIKKMAAMREGKK 245 Query: 282 ITF 284 + Sbjct: 246 DYY 248 >gi|313634809|gb|EFS01238.1| radical SAM enzyme, Cfr family [Listeria seeligeri FSL N1-067] gi|313639434|gb|EFS04296.1| radical SAM enzyme, Cfr family [Listeria seeligeri FSL S4-171] Length = 78 Score = 45.8 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 8/84 (9%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K S+ G+ +L E L G + R +Q+W W+Y + ++ F+ MS++ +E L Sbjct: 1 MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56 Query: 64 LNQHF--SIIYPEIVDEKISCDGT 85 L +F S + ++V E S DGT Sbjct: 57 LTANFVMSTLEEQVVQE--STDGT 78 >gi|168699972|ref|ZP_02732249.1| hypothetical protein GobsU_10628 [Gemmata obscuriglobus UQM 2246] Length = 313 Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust. Identities = 63/265 (23%), Positives = 110/265 (41%), Gaps = 35/265 (13%) Query: 118 VSSQVGCSLTCSFCY-TGT-QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175 +SSQ GC+ C C+ T T Q +R+ T E L Q A ++L + EG +V Sbjct: 49 LSSQTGCAQACRMCHLTATGQTHLRDTTFNEFLEQ---AETVLAHY----RREGKPARAV 101 Query: 176 GRKISNIVMMGMGEPLCN------FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIA 229 + +M GEPL + D + LS + GL T+ F Sbjct: 102 -----HFNLMARGEPLASKVIATRGDELLGELSRLAVGSGLRPRHLISTIYPKAFGD--- 153 Query: 230 RVGEEIGVM----LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFE 285 R E++ V+ + S+++VS R +P + +P E+ +D + S + + Sbjct: 154 RALEDVFVVHQPEIHYSIYSVSERFRRRWLP--KAHPAEVALDRLAAWQRHS-LKLVVLH 210 Query: 286 YVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR 343 + + G ND+ D + L + + A IN++ +NP+ + + +V + I R Sbjct: 211 HAYIAGENDTEGDVHAICDALEERKLMAHINVVRYNPFDPARHGTEPPEAVVERNAAIYR 270 Query: 344 S---GYSSPIRTPRGLDILAACGQL 365 G + G D+ A+CG Sbjct: 271 ERLPGARVVVIARVGFDVAASCGMF 295 >gi|15642910|ref|NP_227951.1| hypothetical protein TM0136 [Thermotoga maritima MSB8] gi|4980628|gb|AAD35229.1|AE001699_6 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 329 Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust. Identities = 67/296 (22%), Positives = 120/296 (40%), Gaps = 47/296 (15%) Query: 99 GPVEIETVYIPEKSRGTLC-------------------VSSQVGCSLTCSFCYTGTQKLV 139 G E+ VY+ E SRG L VS+ GC + C C G Sbjct: 26 GKEEVAYVYLGETSRGNLVEFVESIQPPVPREKKWVLIVSTLAGCPVGCLMCDAGG--FY 83 Query: 140 R-NLTAEEILLQV-LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD-- 195 R L+A+EI Q+ L +S +P IPS KI MGEP N Sbjct: 84 RGKLSADEIFEQIDFLVKS---RYPNGR------IPSEKFKIQ---FARMGEPALNEAVL 131 Query: 196 NVKKSLSIASDSMGLSFSKRRIT-LSTSGFVPNIARVGEEI---GVMLAISLHAVSNDLR 251 +V K L ++ GL S + T F ++ ++ E+ L S+H+ R Sbjct: 132 DVLKELPARYEAPGLMPSISTVAPCGTDSFFEDLLKIKEKHYRGKFQLQFSIHSTDEKER 191 Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311 + ++P+ +K+ LE + + + + N R+IT + + + + P+ +I++ Sbjct: 192 DQIIPV-KKWSLEKISEFGKRFVK-ENDRKITLNFAVAQEYSLDPK---VIIRVFDPEKF 246 Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 + + P NP + + V E +K + ++ G +++ + G+L+ Sbjct: 247 LVKITPVNPTYRSKENNLNSDVDVERKELLKHRNFIEELKKA-GFEVILSIGELEE 301 >gi|326333648|ref|ZP_08199885.1| radical SAM enzyme, Cfr family [Nocardioidaceae bacterium Broad-1] gi|325948554|gb|EGD40657.1| radical SAM enzyme, Cfr family [Nocardioidaceae bacterium Broad-1] Length = 57 Score = 43.5 bits (101), Expect = 0.050, Method: Composition-based stats. Identities = 21/53 (39%), Positives = 29/53 (54%) Query: 315 LIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 L P NP PG ++ SD D F ++ G S+ +R RG +I ACGQL + Sbjct: 3 LCPLNPTPGSKWTASDPADEREFVRRLEAKGISTTVRDTRGREIDGACGQLAA 55 >gi|323704620|ref|ZP_08116198.1| Radical SAM domain protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323536082|gb|EGB25855.1| Radical SAM domain protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 453 Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust. Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 35/176 (19%) Query: 102 EIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT--GTQKLVRNLTAEEILLQVLLARSLLG 159 E + + + S LC+ C+L C +C+ G R L ++E+ + Sbjct: 82 EAASHFTAKDSVKALCLHVSHDCNLRCEYCFAQKGDYNTGRKLMSKEVAFKA-------- 133 Query: 160 DFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR-RIT 218 ++ +V S GR+ I G GEPL NFD VK ++ S+ F+K+ T Sbjct: 134 -------VDYLVKNSSGRRNIEIDFFG-GEPLLNFDVVKATVDYGR-SLEDKFNKKFYFT 184 Query: 219 LSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274 ++T+G + + ++ ++ ++ N+++ I+ + + D RHY Sbjct: 185 ITTNGTLLDDEKI------------KFLNKNMDNVVISIDGRKEIH---DEIRHYA 225 >gi|302854259|ref|XP_002958639.1| hypothetical protein VOLCADRAFT_99921 [Volvox carteri f. nagariensis] gi|300256028|gb|EFJ40305.1| hypothetical protein VOLCADRAFT_99921 [Volvox carteri f. nagariensis] Length = 438 Score = 42.7 bits (99), Expect = 0.086, Method: Compositional matrix adjust. Identities = 49/153 (32%), Positives = 58/153 (37%), Gaps = 44/153 (28%) Query: 77 DEKISCDGTRKWLLRFP-ARCIGGPVEIETVYIP------------EKSRGTLCVSSQVG 123 D + DGTRK + R GG IETV IP E R TLCVSSQV Sbjct: 191 DVTPASDGTRKLVFRVTEGEAAGG--RIETVLIPWFRDYDPRVGRREHPRYTLCVSSQV- 247 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 L+A+ LL P + I+NIV Sbjct: 248 ----------------------------LVAQRLLDQDPARPPAATAATAATAAPITNIV 279 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216 MGMGEPL N V ++ I + GL FS R Sbjct: 280 FMGMGEPLHNCTAVFAAIDILTHRRGLGFSASR 312 >gi|148269924|ref|YP_001244384.1| radical SAM domain-containing protein [Thermotoga petrophila RKU-1] gi|170288609|ref|YP_001738847.1| radical SAM domain-containing protein [Thermotoga sp. RQ2] gi|281412195|ref|YP_003346274.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10] gi|147735468|gb|ABQ46808.1| Radical SAM domain protein [Thermotoga petrophila RKU-1] gi|170176112|gb|ACB09164.1| Radical SAM domain protein [Thermotoga sp. RQ2] gi|281373298|gb|ADA66860.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10] Length = 311 Score = 42.7 bits (99), Expect = 0.100, Method: Compositional matrix adjust. Identities = 53/220 (24%), Positives = 95/220 (43%), Gaps = 25/220 (11%) Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV-LLARSLLGDFPGCED 166 IP + + L VS+ GC + C C G + L+A+EI Q+ L +S +P Sbjct: 36 IPREKKWVLIVSTLAGCPVGCLMCDAGGFYKGK-LSADEIFEQIDFLVKS---RYPNGR- 90 Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRIT-LSTSG 223 IPS KI MGEP N +V K L + ++ GL S + T Sbjct: 91 -----IPSEKFKIQ---FARMGEPALNEAVLDVLKELPVRYEAPGLMPSISTVAPHGTDS 142 Query: 224 FVPNIARVGEEI---GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280 F + ++ E+ L S+H+ R+ ++P+ +K+ L+ + + + + N R Sbjct: 143 FFEELLKIKEKHYRGKFQLQFSIHSTDEKERDRIIPV-KKWSLDKISEFGKRFVK-ENDR 200 Query: 281 RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 +IT + + + + P + + K + + + P NP Sbjct: 201 KITLNFAVAQEYSLDPEVIIEVFDPEKFL---VKITPVNP 237 >gi|281417626|ref|ZP_06248646.1| Radical SAM domain protein [Clostridium thermocellum JW20] gi|281409028|gb|EFB39286.1| Radical SAM domain protein [Clostridium thermocellum JW20] Length = 450 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 59/141 (41%), Gaps = 22/141 (15%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKL--VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172 LC+ C+L C +C+ T RN+ + E+ G + I+ ++ Sbjct: 95 ALCLHISHDCNLRCKYCFASTGNFGGQRNMMSLEV---------------GKKAIDFLIS 139 Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIA 229 S RK I G GEP+ NFD VK + A R TL+T+G + NI Sbjct: 140 ESGNRKNLEIDFFG-GEPMMNFDVVKGIIEYARQKEKEHNKNFRFTLTTNGLLLNDENIK 198 Query: 230 RVGEEI-GVMLAISLHAVSND 249 + E + ++L+I ND Sbjct: 199 YINENMQNIVLSIDGRKEVND 219 >gi|125973423|ref|YP_001037333.1| radical SAM family protein [Clostridium thermocellum ATCC 27405] gi|256004402|ref|ZP_05429383.1| Radical SAM domain protein [Clostridium thermocellum DSM 2360] gi|125713648|gb|ABN52140.1| Radical SAM [Clostridium thermocellum ATCC 27405] gi|255991686|gb|EEU01787.1| Radical SAM domain protein [Clostridium thermocellum DSM 2360] gi|316940341|gb|ADU74375.1| Radical SAM domain protein [Clostridium thermocellum DSM 1313] Length = 450 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 59/141 (41%), Gaps = 22/141 (15%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKL--VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172 LC+ C+L C +C+ T RN+ + E+ G + I+ ++ Sbjct: 95 ALCLHISHDCNLRCKYCFASTGNFGGQRNMMSLEV---------------GKKAIDFLIS 139 Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIA 229 S RK I G GEP+ NFD VK + A R TL+T+G + NI Sbjct: 140 ESGNRKNLEIDFFG-GEPMMNFDVVKGIIEYARQKEKEHNKNFRFTLTTNGLLLNDENIK 198 Query: 230 RVGEEI-GVMLAISLHAVSND 249 + E + ++L+I ND Sbjct: 199 YINENMQNIVLSIDGRKEVND 219 >gi|323706427|ref|ZP_08117989.1| Radical SAM domain protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323534212|gb|EGB24001.1| Radical SAM domain protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 459 Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 18/111 (16%) Query: 115 TLCVSSQVGCSLTCSFCY--TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172 +C++ C+L CS+C+ TG K R L E+ G + I+ ++ Sbjct: 95 AICLNVAHDCNLRCSYCFASTGDFKGGRKLMPYEV---------------GKKAIDFLIK 139 Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223 S RKI + G GEPL NFD VKK + + + T++T+G Sbjct: 140 NSGNRKIVEVDFFG-GEPLLNFDVVKKLVDYGREEAKKYGKTIKYTITTNG 189 >gi|169335672|ref|ZP_02862865.1| hypothetical protein ANASTE_02092 [Anaerofustis stercorihominis DSM 17244] gi|169258410|gb|EDS72376.1| hypothetical protein ANASTE_02092 [Anaerofustis stercorihominis DSM 17244] Length = 454 Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 27/139 (19%) Query: 97 IGGPVEIET---VYIPEK-------SRG---TLCVSSQVGCSLTCSFCYTGTQKLVRNLT 143 IG E+E +Y PEK +G +C+ C+L C +C+ N Sbjct: 61 IGELKELEAENRLYTPEKKVNRKLYEKGIVKAMCLHVSHDCNLACRYCFASGG----NFN 116 Query: 144 AEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI 203 ++ ++ + A+ + DF +I + G K+ V GEPL NFD VKK++ Sbjct: 117 MKKEVMNIETAKKAI-DF---------IISNSGNKVHLEVDFFGGEPLLNFDVVKKTVEY 166 Query: 204 ASDSMGLSFSKRRITLSTS 222 A + R TL+T+ Sbjct: 167 AKEEAKKHNKIFRFTLTTN 185 >gi|154249178|ref|YP_001410003.1| radical SAM domain-containing protein [Fervidobacterium nodosum Rt17-B1] gi|154153114|gb|ABS60346.1| Radical SAM domain protein [Fervidobacterium nodosum Rt17-B1] Length = 329 Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust. Identities = 53/220 (24%), Positives = 88/220 (40%), Gaps = 26/220 (11%) Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL-LARSLLGDFPGCED 166 IP + L VS+ GC + C C G R L+ EEIL Q+L L RS D E Sbjct: 53 IPRDKKWVLIVSTMDGCPVGCKMCDAGGY-YKRRLSKEEILAQILYLIRSRYEDEVPVEK 111 Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVK--KSLSIASDSMGLSFSKRRIT-LSTSG 223 + I +GEP N + +K L D+ GL S + + +G Sbjct: 112 FK-------------IQFARVGEPALNDEVLKVLDELPQIIDAPGLMPSISTVAPIGRNG 158 Query: 224 FVPNIARVGEEI---GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280 + + + E+ L S+H+ R+ ++P+ +K+ + + + + R Sbjct: 159 WFERLIEIKEKHYRGKFQLQFSIHSTDEKQRDEIIPV-KKWSFREISEYGEKFVTTED-R 216 Query: 281 RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 +IT + + K R +N K + I + P NP Sbjct: 217 KITLNFALAKENIADARVIMNFFNPEKFL---IKITPVNP 253 >gi|306844432|ref|ZP_07477022.1| endonuclease III [Brucella sp. BO1] gi|306275245|gb|EFM56995.1| endonuclease III [Brucella sp. BO1] Length = 248 Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 33/66 (50%), Gaps = 2/66 (3%) Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM-MGMGEP 190 Y T L RN ILL L R G+ PG D E M +P VGRK +N+V+ M G+P Sbjct: 102 YIRTIGLWRNKAKNVILLSEALIRDYGGEVPGDRD-ELMKLPGVGRKTANVVLNMAFGQP 160 Query: 191 LCNFDN 196 D Sbjct: 161 TMAVDT 166 >gi|62289142|ref|YP_220935.1| endonuclease III [Brucella abortus bv. 1 str. 9-941] gi|82699081|ref|YP_413655.1| helix-hairpin-helix DNA-binding domain-containing protein [Brucella melitensis biovar Abortus 2308] gi|189023417|ref|YP_001934185.1| Nth, endonuclease III [Brucella abortus S19] gi|254690468|ref|ZP_05153722.1| Nth, endonuclease III [Brucella abortus bv. 6 str. 870] gi|254696588|ref|ZP_05158416.1| Nth, endonuclease III [Brucella abortus bv. 2 str. 86/8/59] gi|254731501|ref|ZP_05190079.1| Nth, endonuclease III [Brucella abortus bv. 4 str. 292] gi|256258724|ref|ZP_05464260.1| Nth, endonuclease III [Brucella abortus bv. 9 str. C68] gi|260546439|ref|ZP_05822179.1| conserved hypothetical protein [Brucella abortus NCTC 8038] gi|260756021|ref|ZP_05868369.1| endonuclease III [Brucella abortus bv. 6 str. 870] gi|260759245|ref|ZP_05871593.1| endonuclease III [Brucella abortus bv. 4 str. 292] gi|260760967|ref|ZP_05873310.1| endonuclease III [Brucella abortus bv. 2 str. 86/8/59] gi|260885042|ref|ZP_05896656.1| endonuclease III [Brucella abortus bv. 9 str. C68] gi|297247558|ref|ZP_06931276.1| endonuclease III [Brucella abortus bv. 5 str. B3196] gi|62195274|gb|AAX73574.1| Nth, endonuclease III [Brucella abortus bv. 1 str. 9-941] gi|82615182|emb|CAJ10121.1| Helix-hairpin-helix motif:HhH-GPD:Helix-hairpin-helix DNA-binding, class 1:Endonuclease III, HhH:Endonuclease III/Nth [Brucella melitensis biovar Abortus 2308] gi|189018989|gb|ACD71711.1| Nth, endonuclease III [Brucella abortus S19] gi|260096546|gb|EEW80422.1| conserved hypothetical protein [Brucella abortus NCTC 8038] gi|260669563|gb|EEX56503.1| endonuclease III [Brucella abortus bv. 4 str. 292] gi|260671399|gb|EEX58220.1| endonuclease III [Brucella abortus bv. 2 str. 86/8/59] gi|260676129|gb|EEX62950.1| endonuclease III [Brucella abortus bv. 6 str. 870] gi|260874570|gb|EEX81639.1| endonuclease III [Brucella abortus bv. 9 str. C68] gi|297174727|gb|EFH34074.1| endonuclease III [Brucella abortus bv. 5 str. B3196] Length = 248 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 33/66 (50%), Gaps = 2/66 (3%) Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM-MGMGEP 190 Y T L RN ILL L R G+ PG D E M +P VGRK +N+V+ M G+P Sbjct: 102 YIRTIGLWRNKAKNVILLSEALIRDYGGEVPGDRD-ELMKLPGVGRKTANVVLNMAFGQP 160 Query: 191 LCNFDN 196 D Sbjct: 161 TMAVDT 166 >gi|237814635|ref|ZP_04593633.1| endonuclease III [Brucella abortus str. 2308 A] gi|237789472|gb|EEP63682.1| endonuclease III [Brucella abortus str. 2308 A] Length = 260 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 33/66 (50%), Gaps = 2/66 (3%) Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM-MGMGEP 190 Y T L RN ILL L R G+ PG D E M +P VGRK +N+V+ M G+P Sbjct: 114 YIRTIGLWRNKAKNVILLSEALIRDYGGEVPGDRD-ELMKLPGVGRKTANVVLNMAFGQP 172 Query: 191 LCNFDN 196 D Sbjct: 173 TMAVDT 178 >gi|240169459|ref|ZP_04748118.1| Fe-S oxidoreductase [Mycobacterium kansasii ATCC 12478] Length = 491 Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust. Identities = 38/163 (23%), Positives = 66/163 (40%), Gaps = 27/163 (16%) Query: 123 GCSLTCSFCYTGTQKLVR-NLTAEEI--LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC++ C++CY + R L + I L+ VL+AR+ Sbjct: 116 GCNIACTYCYDYDKTRFRARLDDDRIHELVDVLIARN---------------------SH 154 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGV 237 +I G GEPL +D +K+++S A + ++ T+G F P + E Sbjct: 155 LSIAFHG-GEPLLRWDQIKRTVSYARERAAAVGHLVSFSIQTNGLFFTPAVVDYLERESF 213 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280 + ISL + ++ V + PL+ + R YP + R Sbjct: 214 SVGISLDGSDEEANSLRVVRHGPTPLQAVRQLLREYPAFARDR 256 >gi|255994316|ref|ZP_05427451.1| arylsulfatase regulator [Eubacterium saphenum ATCC 49989] gi|255993029|gb|EEU03118.1| arylsulfatase regulator [Eubacterium saphenum ATCC 49989] Length = 520 Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust. Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 17/117 (14%) Query: 110 EKSRGTL---CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166 +KS+ TL C+ GC++ C +C+ G + +++L+ D Sbjct: 157 KKSQSTLKAICLHVAHGCNMRCGYCFAGDGEYNG-------------SKALMDDATAKAA 203 Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223 I+ ++ S R+ + G GEPL NFD +K ++ A + R TL+T+G Sbjct: 204 IDFLIRESKNRRNLEVDFFG-GEPLLNFDVIKNTVKYARSIEKSANKNFRFTLTTNG 259 >gi|326791643|ref|YP_004309464.1| radical SAM protein [Clostridium lentocellum DSM 5427] gi|326542407|gb|ADZ84266.1| Radical SAM domain protein [Clostridium lentocellum DSM 5427] Length = 449 Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust. Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 19/132 (14%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L C +C+ G + + RSL+ G + ++ ++ S Sbjct: 94 ALCLHVAHDCNLKCKYCFAGEGEYHGH-------------RSLMSIEVGKKAVDFIIENS 140 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234 RK I G GEPL N++ VK++++ A + + R T++T+G + N +E Sbjct: 141 KHRKNIEIDFFG-GEPLMNWEMVKETVAYAREREKETGKNFRFTMTTNGVLLN-----DE 194 Query: 235 IGVMLAISLHAV 246 I L ++H V Sbjct: 195 IIDYLNENMHNV 206 >gi|150019940|ref|YP_001305294.1| radical SAM domain-containing protein [Thermosipho melanesiensis BI429] gi|149792461|gb|ABR29909.1| Radical SAM domain protein [Thermosipho melanesiensis BI429] Length = 312 Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust. Identities = 62/268 (23%), Positives = 106/268 (39%), Gaps = 28/268 (10%) Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167 IP + + L VS+ GC + C C G + L ++EI+ Q+L + Sbjct: 36 IPREKKWVLIVSTLNGCPVGCLMCDAGGFYKGK-LQSDEIMEQILFL------------V 82 Query: 168 EGMVI-PSVGRKISNIVMMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRIT-LSTSG 223 E I V + I MGEP N +V + L D+ GL S + + T Sbjct: 83 ESRFINKRVPVEKFKIQFARMGEPALNEAVLDVLERLPKEIDAPGLMPSVSTVAPIGTDD 142 Query: 224 FVPNIARVGEEIGV---MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280 F + + +++ + L S+HA D RN ++PI +K+ E + + S R Sbjct: 143 FFERLLEIKDKMYLGRFQLQFSIHATDKDQRNRIIPI-KKWSFEDIAKYGEKFVK-SGDR 200 Query: 281 RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP-WPGCEYLCSDQKDIVTFSE 339 ++T + + K + D +IK I + P NP + + D+ TF Sbjct: 201 KVTLNFALAK---QNIADPDVIIKYFDKEKFLIKITPINPTYSAMKNNLESDIDLKTFIP 257 Query: 340 CIKRSGYSSPIRTPRGLDILAACGQLKS 367 Y G D++ + G+L+ Sbjct: 258 V--NHQYFVEKLMEAGYDVIISIGELEE 283 >gi|240147168|ref|ZP_04745769.1| radical SAM enzyme, Cfr family [Roseburia intestinalis L1-82] gi|257200635|gb|EEU98919.1| radical SAM enzyme, Cfr family [Roseburia intestinalis L1-82] Length = 67 Score = 40.8 bits (94), Expect = 0.39, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 30/54 (55%) Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +NLIP NP Y+ D + I+ F ++++ + IR G DI ACGQL+ Sbjct: 5 VNLIPVNPIKERSYVQPDHEAILNFKNRLEKNAINVTIRREMGRDIDGACGQLR 58 >gi|257438968|ref|ZP_05614723.1| radical SAM domain protein [Faecalibacterium prausnitzii A2-165] gi|257198553|gb|EEU96837.1| radical SAM domain protein [Faecalibacterium prausnitzii A2-165] Length = 487 Score = 40.4 bits (93), Expect = 0.44, Method: Compositional matrix adjust. Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 18/130 (13%) Query: 100 PVEIETVYIPEKSRGT----LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR 155 P E + K+R T LC+ C+L CS+C+ + E L+ + + Sbjct: 85 PDTYEDLAFDFKNRNTVVKALCLHVAHTCNLNCSYCFASQGRY----QGERALMSFEVGK 140 Query: 156 SLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR 215 + DF ++ S R+ + G GEPL NFD VKK ++ + + Sbjct: 141 RAM-DF--------LIENSGSRRNLEVDFFG-GEPLMNFDMVKKLVAYCREQEKIHNKNF 190 Query: 216 RITLSTSGFV 225 R T++T+G + Sbjct: 191 RFTMTTNGML 200 >gi|163814895|ref|ZP_02206283.1| hypothetical protein COPEUT_01046 [Coprococcus eutactus ATCC 27759] gi|158449834|gb|EDP26829.1| hypothetical protein COPEUT_01046 [Coprococcus eutactus ATCC 27759] Length = 461 Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 16/114 (14%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L C +C+ G + + L+ + +A+ L DF +V S Sbjct: 93 ALCLHIAHDCNLACRYCFAGEGEY----KGDRALMSLEVAKKSL-DF--------LVANS 139 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR-RITLSTSGFVPN 227 R+ + G GEPL N+D VKK++ S+ + K+ R TL+T+G + N Sbjct: 140 GFRRNLEVDFFG-GEPLMNWDVVKKTVEYGR-SLEEKYDKKFRFTLTTNGVLLN 191 >gi|218780005|ref|YP_002431323.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01] gi|218761389|gb|ACL03855.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01] Length = 468 Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust. Identities = 49/201 (24%), Positives = 78/201 (38%), Gaps = 30/201 (14%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC +C FCY +K R E+++ ++ R G D+E + Sbjct: 204 GCPFSCGFCYN-FRKHYRARKPEDVVQELAAIRDR-----GIRDVE---------ICDDT 248 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML-AI 241 + L FD + K + + +SF RI F +A+ G++ GV L A Sbjct: 249 FTVNEDRALAIFDLIVK------ERLDISF---RIKSRVDVFTEKLAKAGKKAGVYLVAF 299 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 + + S + IL +N+K L +ACR A ++ D+ D + Sbjct: 300 GMESGS---QKILDAMNKKITLAQSAEACRLTKKYGIAAHSSWVIGYPGETPDTVEDTVR 356 Query: 302 LIKILKGIPAKINLIPFNPWP 322 ILK PA NL P+P Sbjct: 357 F--ILKNKPATANLAVLRPYP 375 >gi|303242022|ref|ZP_07328514.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2] gi|302590440|gb|EFL60196.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2] Length = 455 Score = 40.0 bits (92), Expect = 0.59, Method: Compositional matrix adjust. Identities = 42/196 (21%), Positives = 86/196 (43%), Gaps = 45/196 (22%) Query: 115 TLCVSSQVGCSLTCSFCYT--GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172 LC+ C+L C +C+ G+ K+ ++L E+ + + DF +V Sbjct: 95 ALCLHVAHDCNLMCEYCFASKGSYKVAKSLMPAEVAFKAV-------DF--------VVN 139 Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232 S RK I G GEPL NFD +K+++ + S T++T+G + + ++ Sbjct: 140 NSGTRKNVEIDFFG-GEPLLNFDVIKQTVEYSKKVQERSGKNIYFTITTNGTLLDDEKI- 197 Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 ++ ++ N+++ I+ + + DA R+ G + T++ ++ Sbjct: 198 -----------KYINENMNNVVISIDGRKEVH---DAIRYDAG----HKGTYDKIL---- 235 Query: 293 NDSPRDALNLIKILKG 308 ++AL L++ KG Sbjct: 236 ----KNALKLVEGRKG 247 >gi|220927987|ref|YP_002504896.1| radical SAM protein [Clostridium cellulolyticum H10] gi|219998315|gb|ACL74916.1| Radical SAM domain protein [Clostridium cellulolyticum H10] Length = 447 Score = 40.0 bits (92), Expect = 0.59, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 25/135 (18%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L C +C+ T + R+++ G + I+ ++ S Sbjct: 93 ALCLHICHDCNLRCKYCFASTGSFGGH-------------RTMMDLETGKKAIDFLIEKS 139 Query: 175 VGRKISNIVMMGMGEPLCNFDNVK---KSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231 GR+ + G GEPL NFD VK K I G +F R T++T+ + N Sbjct: 140 AGRRNLEVDFFG-GEPLMNFDVVKGIVKYARIREKEAGKNF---RFTITTNAVLLN---- 191 Query: 232 GEEIGVMLAISLHAV 246 EEI + ++H V Sbjct: 192 -EEIKDFINANMHNV 205 >gi|160879028|ref|YP_001557996.1| radical SAM domain-containing protein [Clostridium phytofermentans ISDg] gi|160427694|gb|ABX41257.1| Radical SAM domain protein [Clostridium phytofermentans ISDg] Length = 489 Score = 39.7 bits (91), Expect = 0.73, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 66/166 (39%), Gaps = 27/166 (16%) Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L Q S IY E+ K+ DG + IG + ETV LC+ Sbjct: 91 LKQEISNIYDEVT--KMKEDGNL-FTEDIYENYIGSFKKRETVV------KALCLHIAHD 141 Query: 124 CSLTCSFCYT--GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 C+L C +C+ G R L + E+ Q L DF ++ S RK Sbjct: 142 CNLACRYCFAEEGEYHGRRALMSYEVGKQAL-------DF--------LIANSGSRKNLE 186 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227 + G GEPL NF VK ++ + K R TL+T+G + N Sbjct: 187 VDFFG-GEPLMNFQVVKDLVAYGRSQEEIHNKKFRFTLTTNGVLLN 231 >gi|304317007|ref|YP_003852152.1| radical SAM protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778509|gb|ADL69068.1| Radical SAM domain protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 454 Score = 39.7 bits (91), Expect = 0.76, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 18/111 (16%) Query: 115 TLCVSSQVGCSLTCSFCY--TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172 +C++ C+L CS+C+ TG K R L + E+ G + I+ ++ Sbjct: 95 AICLNVAHDCNLRCSYCFASTGDFKGGRKLMSYEV---------------GKKAIDFLIK 139 Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223 S RKI + G GEPL NF+ VKK + + T++T+G Sbjct: 140 NSGNRKIVEVDFFG-GEPLLNFEVVKKIVEYGRQEAKKHGKTIKYTITTNG 189 >gi|295094228|emb|CBK83319.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Coprococcus sp. ART55/1] Length = 454 Score = 39.7 bits (91), Expect = 0.77, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 16/114 (14%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L C +C+ G + + L+ + +A+ L DF +V S Sbjct: 93 ALCLHIAHDCNLACRYCFAGEGEY----KGDRALMSLEVAKKSL-DF--------LVANS 139 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR-RITLSTSGFVPN 227 R+ + G GEPL N+D VKK++ S+ + K+ R TL+T+G + N Sbjct: 140 GLRRNLEVDFFG-GEPLMNWDVVKKTVEYGR-SLEEKYDKKFRFTLTTNGVLLN 191 >gi|297847344|ref|XP_002891553.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297337395|gb|EFH67812.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 97 Score = 39.7 bits (91), Expect = 0.79, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 35/64 (54%) Query: 318 FNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPR 377 +NP G E +K ++ F+ ++ ++ +R RGLD AACGQL++ ++ P + Sbjct: 11 YNPIEGSEQKRPYKKAVLAFAAALESRKITASVRQTRGLDASAACGQLRNKFQKSPLLAE 70 Query: 378 QEMQ 381 + Q Sbjct: 71 TDGQ 74 >gi|256112669|ref|ZP_05453590.1| endonuclease III [Brucella melitensis bv. 3 str. Ether] gi|265994111|ref|ZP_06106668.1| endonuclease III [Brucella melitensis bv. 3 str. Ether] gi|262765092|gb|EEZ11013.1| endonuclease III [Brucella melitensis bv. 3 str. Ether] Length = 248 Score = 39.7 bits (91), Expect = 0.80, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 2/66 (3%) Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM-MGMGEP 190 Y T L RN ILL L R G+ PG D E + +P VGRK +N+V+ M G+P Sbjct: 102 YIRTIGLWRNKAKNVILLSEALIRDYGGEVPGDRD-ELVKLPGVGRKTANVVLNMAFGQP 160 Query: 191 LCNFDN 196 D Sbjct: 161 TMAVDT 166 >gi|256368630|ref|YP_003106136.1| endonuclease III [Brucella microti CCM 4915] gi|255998788|gb|ACU47187.1| endonuclease III [Brucella microti CCM 4915] Length = 248 Score = 39.7 bits (91), Expect = 0.80, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 2/66 (3%) Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM-MGMGEP 190 Y T L RN ILL L R G+ PG D E + +P VGRK +N+V+ M G+P Sbjct: 102 YIRTIGLWRNKAKNVILLSEALIRDYGGEVPGDRD-ELVKLPGVGRKTANVVLNMAFGQP 160 Query: 191 LCNFDN 196 D Sbjct: 161 TMAVDT 166 >gi|294851563|ref|ZP_06792236.1| endonuclease III [Brucella sp. NVSL 07-0026] gi|294820152|gb|EFG37151.1| endonuclease III [Brucella sp. NVSL 07-0026] Length = 248 Score = 39.7 bits (91), Expect = 0.82, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 2/66 (3%) Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM-MGMGEP 190 Y T L RN ILL L R G+ PG D E + +P VGRK +N+V+ M G+P Sbjct: 102 YIRTIGLWRNKAKNVILLSEALIRDYGGEVPGDRD-ELVKLPGVGRKTANVVLNMAFGQP 160 Query: 191 LCNFDN 196 D Sbjct: 161 TMAVDT 166 >gi|210616298|ref|ZP_03291026.1| hypothetical protein CLONEX_03247 [Clostridium nexile DSM 1787] gi|210149853|gb|EEA80862.1| hypothetical protein CLONEX_03247 [Clostridium nexile DSM 1787] Length = 467 Score = 39.7 bits (91), Expect = 0.82, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 57/133 (42%), Gaps = 23/133 (17%) Query: 102 EIETVYIPE-KSRGT----LCVSSQVGCSLTCSFCYT--GTQKLVRNLTAEEILLQVLLA 154 +I YI E KSR T LC+ C+L C +C+ G R L + E+ + L Sbjct: 89 DIYEAYIGEVKSRKTVVKALCIHIAHDCNLACQYCFAEEGEYHGRRALMSYEVGKKAL-- 146 Query: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSK 214 DF ++ S RK + G GEPL N+ VK ++ + L Sbjct: 147 -----DF--------LIANSGNRKNLEVDFFG-GEPLMNWQVVKDLVAYGREQEKLHDKH 192 Query: 215 RRITLSTSGFVPN 227 R TL+T+G + N Sbjct: 193 FRFTLTTNGVLLN 205 >gi|17988065|ref|NP_540699.1| endonuclease III [Brucella melitensis bv. 1 str. 16M] gi|225851699|ref|YP_002731932.1| endonuclease III [Brucella melitensis ATCC 23457] gi|254694957|ref|ZP_05156785.1| endonuclease III [Brucella abortus bv. 3 str. Tulya] gi|254707144|ref|ZP_05168972.1| endonuclease III [Brucella pinnipedialis M163/99/10] gi|254709313|ref|ZP_05171124.1| endonuclease III [Brucella pinnipedialis B2/94] gi|254713265|ref|ZP_05175076.1| endonuclease III [Brucella ceti M644/93/1] gi|254716382|ref|ZP_05178193.1| endonuclease III [Brucella ceti M13/05/1] gi|254718380|ref|ZP_05180191.1| endonuclease III [Brucella sp. 83/13] gi|256030836|ref|ZP_05444450.1| endonuclease III [Brucella pinnipedialis M292/94/1] gi|256045956|ref|ZP_05448828.1| endonuclease III [Brucella melitensis bv. 1 str. Rev.1] gi|256060306|ref|ZP_05450479.1| endonuclease III [Brucella neotomae 5K33] gi|256158865|ref|ZP_05456719.1| endonuclease III [Brucella ceti M490/95/1] gi|256254242|ref|ZP_05459778.1| endonuclease III [Brucella ceti B1/94] gi|256264790|ref|ZP_05467322.1| endonuclease III [Brucella melitensis bv. 2 str. 63/9] gi|260169740|ref|ZP_05756551.1| endonuclease III [Brucella sp. F5/99] gi|260563238|ref|ZP_05833724.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|261215298|ref|ZP_05929579.1| endonuclease III [Brucella abortus bv. 3 str. Tulya] gi|261218166|ref|ZP_05932447.1| endonuclease III [Brucella ceti M13/05/1] gi|261221393|ref|ZP_05935674.1| endonuclease III [Brucella ceti B1/94] gi|261314621|ref|ZP_05953818.1| endonuclease III [Brucella pinnipedialis M163/99/10] gi|261316823|ref|ZP_05956020.1| endonuclease III [Brucella pinnipedialis B2/94] gi|261320986|ref|ZP_05960183.1| endonuclease III [Brucella ceti M644/93/1] gi|261324280|ref|ZP_05963477.1| endonuclease III [Brucella neotomae 5K33] gi|261759280|ref|ZP_06002989.1| endonuclease III [Brucella sp. F5/99] gi|265983343|ref|ZP_06096078.1| endonuclease III [Brucella sp. 83/13] gi|265987893|ref|ZP_06100450.1| endonuclease III [Brucella pinnipedialis M292/94/1] gi|265992368|ref|ZP_06104925.1| endonuclease III [Brucella melitensis bv. 1 str. Rev.1] gi|265997354|ref|ZP_06109911.1| endonuclease III [Brucella ceti M490/95/1] gi|306839612|ref|ZP_07472416.1| endonuclease III [Brucella sp. NF 2653] gi|306842549|ref|ZP_07475200.1| endonuclease III [Brucella sp. BO2] gi|17983814|gb|AAL52963.1| endonuclease iii [Brucella melitensis bv. 1 str. 16M] gi|225640064|gb|ACN99977.1| endonuclease III [Brucella melitensis ATCC 23457] gi|260153254|gb|EEW88346.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|260916905|gb|EEX83766.1| endonuclease III [Brucella abortus bv. 3 str. Tulya] gi|260919977|gb|EEX86630.1| endonuclease III [Brucella ceti B1/94] gi|260923255|gb|EEX89823.1| endonuclease III [Brucella ceti M13/05/1] gi|261293676|gb|EEX97172.1| endonuclease III [Brucella ceti M644/93/1] gi|261296046|gb|EEX99542.1| endonuclease III [Brucella pinnipedialis B2/94] gi|261300260|gb|EEY03757.1| endonuclease III [Brucella neotomae 5K33] gi|261303647|gb|EEY07144.1| endonuclease III [Brucella pinnipedialis M163/99/10] gi|261739264|gb|EEY27260.1| endonuclease III [Brucella sp. F5/99] gi|262551822|gb|EEZ07812.1| endonuclease III [Brucella ceti M490/95/1] gi|263003434|gb|EEZ15727.1| endonuclease III [Brucella melitensis bv. 1 str. Rev.1] gi|263095199|gb|EEZ18868.1| endonuclease III [Brucella melitensis bv. 2 str. 63/9] gi|264660090|gb|EEZ30351.1| endonuclease III [Brucella pinnipedialis M292/94/1] gi|264661935|gb|EEZ32196.1| endonuclease III [Brucella sp. 83/13] gi|306287405|gb|EFM58885.1| endonuclease III [Brucella sp. BO2] gi|306405310|gb|EFM61585.1| endonuclease III [Brucella sp. NF 2653] gi|326408187|gb|ADZ65252.1| endonuclease III [Brucella melitensis M28] Length = 248 Score = 39.7 bits (91), Expect = 0.83, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 2/66 (3%) Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM-MGMGEP 190 Y T L RN ILL L R G+ PG D E + +P VGRK +N+V+ M G+P Sbjct: 102 YIRTIGLWRNKAKNVILLSEALIRDYGGEVPGDRD-ELVKLPGVGRKTANVVLNMAFGQP 160 Query: 191 LCNFDN 196 D Sbjct: 161 TMAVDT 166 >gi|313114194|ref|ZP_07799746.1| radical SAM domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310623603|gb|EFQ07006.1| radical SAM domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 487 Score = 39.7 bits (91), Expect = 0.87, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 18/130 (13%) Query: 100 PVEIETVYIPEKSRGT----LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR 155 P E + K+R T LC+ C+L CS+C+ + + R Sbjct: 85 PDTYENMAFDFKNRNTVVKALCLHVAHTCNLNCSYCFASQGRYQGD-------------R 131 Query: 156 SLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR 215 +L+ G ++ ++ S R+ + G GEPL NFD VKK ++ + + Sbjct: 132 ALMSFEVGKRAMDFLIENSGTRRNLEVDFFG-GEPLMNFDMVKKLVAYCREQEKIHNKNF 190 Query: 216 RITLSTSGFV 225 R T++T+G + Sbjct: 191 RFTMTTNGML 200 >gi|148559865|ref|YP_001258197.1| endonuclease III [Brucella ovis ATCC 25840] gi|225626703|ref|ZP_03784742.1| endonuclease III [Brucella ceti str. Cudo] gi|148371122|gb|ABQ61101.1| endonuclease III [Brucella ovis ATCC 25840] gi|225618360|gb|EEH15403.1| endonuclease III [Brucella ceti str. Cudo] Length = 260 Score = 39.7 bits (91), Expect = 0.90, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 2/66 (3%) Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM-MGMGEP 190 Y T L RN ILL L R G+ PG D E + +P VGRK +N+V+ M G+P Sbjct: 114 YIRTIGLWRNKAKNVILLSEALIRDYGGEVPGDRD-ELVKLPGVGRKTANVVLNMAFGQP 172 Query: 191 LCNFDN 196 D Sbjct: 173 TMAVDT 178 >gi|326537901|gb|ADZ86116.1| endonuclease III [Brucella melitensis M5-90] Length = 239 Score = 39.7 bits (91), Expect = 0.90, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 2/66 (3%) Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM-MGMGEP 190 Y T L RN ILL L R G+ PG D E + +P VGRK +N+V+ M G+P Sbjct: 93 YIRTIGLWRNKAKNVILLSEALIRDYGGEVPGDRD-ELVKLPGVGRKTANVVLNMAFGQP 151 Query: 191 LCNFDN 196 D Sbjct: 152 TMAVDT 157 >gi|304440494|ref|ZP_07400381.1| radical SAM domain protein [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370972|gb|EFM24591.1| radical SAM domain protein [Peptoniphilus duerdenii ATCC BAA-1640] Length = 451 Score = 39.3 bits (90), Expect = 0.93, Method: Compositional matrix adjust. Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 14/128 (10%) Query: 100 PVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLG 159 P ++ VY P+ +C+ C+L C +C+ + E +L+ + ++ + Sbjct: 79 PRLMKAVYNPQNIIKAMCLHVSHDCNLRCKYCFASQG----DFHGERLLMDLETGKAAI- 133 Query: 160 DFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITL 219 DF ++ S R+ + G GEPL NF+ VKK + + R TL Sbjct: 134 DF--------LLENSGNRRNLEVDFFG-GEPLMNFNLVKKLVEYGDEREKEYGKNFRWTL 184 Query: 220 STSGFVPN 227 +T+G + N Sbjct: 185 TTNGMLLN 192 >gi|160893377|ref|ZP_02074163.1| hypothetical protein CLOL250_00927 [Clostridium sp. L2-50] gi|156864952|gb|EDO58383.1| hypothetical protein CLOL250_00927 [Clostridium sp. L2-50] Length = 454 Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust. Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 14/113 (12%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC++ C+L C +C+ G + + L+ + +A+ L DF ++ + Sbjct: 93 ALCINIAHDCNLACRYCFAGEGEY----KGDRGLMPLDIAKKSL-DF---------LVAN 138 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227 G +++ V GEPL N+D VK+++ K R TL+T+G + N Sbjct: 139 SGNRVNLEVDFFGGEPLMNWDVVKETVRYGRSLEEKHNKKFRFTLTTNGVLLN 191 >gi|323703288|ref|ZP_08114939.1| Radical SAM domain protein [Desulfotomaculum nigrificans DSM 574] gi|323531753|gb|EGB21641.1| Radical SAM domain protein [Desulfotomaculum nigrificans DSM 574] Length = 450 Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 18/115 (15%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLV--RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172 LC+ + C+L C +C+ G + L +EE+ G I+ ++ Sbjct: 92 ALCLHAAHDCNLRCRYCFAGQGQFGGPSGLLSEEV---------------GRAAIDFLIE 136 Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227 S RK I G GEPL NF +K+ + + K + TL+T+G + N Sbjct: 137 QSGNRKHVEIDFFG-GEPLLNFKVIKELVPYGRQKAEQAGKKIKFTLTTNGVLLN 190 >gi|238923391|ref|YP_002936907.1| arylsulfatase regulator (Fe-S oxidoreductase) [Eubacterium rectale ATCC 33656] gi|238875066|gb|ACR74773.1| arylsulfatase regulator (Fe-S oxidoreductase) [Eubacterium rectale ATCC 33656] Length = 456 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 14/113 (12%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L C +C+ AEE + R+L+ G + ++ ++ S Sbjct: 94 ALCLHIAHDCNLACRYCF-----------AEE--GEYHGRRALMSYETGKQALDFLIANS 140 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227 R+ + G GEPL N+D VK+ ++ + L R TL+T+G + N Sbjct: 141 GSRRNLEVDFFG-GEPLMNWDVVKQLVAYGREQEKLHDKHFRFTLTTNGVLLN 192 >gi|317499049|ref|ZP_07957330.1| radical SAM superfamily protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316893699|gb|EFV15900.1| radical SAM superfamily protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 458 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 18/115 (15%) Query: 115 TLCVSSQVGCSLTCSFCYT--GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172 LC+ C+L C +C+ G K R L + E+ + L DF +V Sbjct: 93 ALCLHIAHDCNLACRYCFAEEGEYKGRRALMSAEVGKKAL-------DF--------LVE 137 Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227 S R+ + G GEPL NFD VK+ ++ K R TL+T+G + N Sbjct: 138 NSGNRRNLEVDFFG-GEPLMNFDVVKEIVAYGRSLEETHDKKFRFTLTTNGVLLN 191 >gi|23501077|ref|NP_697204.1| endonuclease III [Brucella suis 1330] gi|161618154|ref|YP_001592041.1| endonuclease III [Brucella canis ATCC 23365] gi|163842435|ref|YP_001626839.1| endonuclease III [Brucella suis ATCC 23445] gi|254705343|ref|ZP_05167171.1| endonuclease III [Brucella suis bv. 3 str. 686] gi|260567197|ref|ZP_05837667.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] gi|261756055|ref|ZP_05999764.1| endonuclease III [Brucella suis bv. 3 str. 686] gi|23346945|gb|AAN29119.1| endonuclease III [Brucella suis 1330] gi|161334965|gb|ABX61270.1| endonuclease III [Brucella canis ATCC 23365] gi|163673158|gb|ABY37269.1| endonuclease III [Brucella suis ATCC 23445] gi|260156715|gb|EEW91795.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] gi|261745808|gb|EEY33734.1| endonuclease III [Brucella suis bv. 3 str. 686] Length = 248 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 2/66 (3%) Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM-MGMGEP 190 Y T L RN ILL L R G+ PG D E + +P VGRK +N+V+ M G+P Sbjct: 102 YIRTIGLWRNKAKNIILLSEALIRDYGGEVPGDRD-ELVKLPGVGRKTANVVLNMAFGQP 160 Query: 191 LCNFDN 196 D Sbjct: 161 TMAVDT 166 >gi|291560706|emb|CBL39506.1| Arylsulfatase regulator (Fe-S oxidoreductase) [butyrate-producing bacterium SSC/2] Length = 458 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 18/115 (15%) Query: 115 TLCVSSQVGCSLTCSFCYT--GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172 LC+ C+L C +C+ G K R L + E+ + L DF +V Sbjct: 93 ALCLHIAHDCNLACRYCFAEEGEYKGRRALMSAEVGKKAL-------DF--------LVE 137 Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227 S R+ + G GEPL NFD VK+ ++ K R TL+T+G + N Sbjct: 138 NSGNRRNLEVDFFG-GEPLMNFDVVKEIVAYGRSLEETHDKKFRFTLTTNGVLLN 191 >gi|254700972|ref|ZP_05162800.1| endonuclease III [Brucella suis bv. 5 str. 513] gi|261751492|ref|ZP_05995201.1| endonuclease III [Brucella suis bv. 5 str. 513] gi|261741245|gb|EEY29171.1| endonuclease III [Brucella suis bv. 5 str. 513] Length = 248 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 2/66 (3%) Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM-MGMGEP 190 Y T L RN ILL L R G+ PG D E + +P VGRK +N+V+ M G+P Sbjct: 102 YIRTIGLWRNKAKNIILLSEALIRDYGGEVPGDRD-ELVKLPGVGRKTANVVLNMAFGQP 160 Query: 191 LCNFDN 196 D Sbjct: 161 TMAVDT 166 >gi|167766768|ref|ZP_02438821.1| hypothetical protein CLOSS21_01276 [Clostridium sp. SS2/1] gi|167711522|gb|EDS22101.1| hypothetical protein CLOSS21_01276 [Clostridium sp. SS2/1] Length = 458 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 18/115 (15%) Query: 115 TLCVSSQVGCSLTCSFCYT--GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172 LC+ C+L C +C+ G K R L + E+ + L DF +V Sbjct: 93 ALCLHIAHDCNLACRYCFAEEGEYKGRRALMSAEVGKKAL-------DF--------LVE 137 Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227 S R+ + G GEPL NFD VK+ ++ K R TL+T+G + N Sbjct: 138 NSGNRRNLEVDFFG-GEPLMNFDVVKEIVAYGRSLEETHDKKFRFTLTTNGVLLN 191 >gi|328544106|ref|YP_004304215.1| Quinohemoprotein amine dehydrogenase SAM-radical dependentactivating subunit [polymorphum gilvum SL003B-26A1] gi|326413849|gb|ADZ70912.1| Quinohemoprotein amine dehydrogenase, putative SAM-radical dependentactivating subunit [Polymorphum gilvum SL003B-26A1] Length = 478 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 19/117 (16%) Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 P R PV IET + T+ ++ GC+L+C++CY + L + L+ Sbjct: 86 PPRAERPPVRIETFPLT-----TMVLNVNTGCNLSCTYCY--KEDLDTPSKGRRMELET- 137 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209 RS IE ++ S R NIV G GEPL N ++ ++ A D G Sbjct: 138 AKRS----------IELLLAESPDRDSYNIVFFG-GEPLSNLALIRDVVAYAEDRFG 183 >gi|46205883|ref|ZP_00047970.2| hypothetical protein Magn03000763 [Magnetospirillum magnetotacticum MS-1] Length = 56 Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 16/21 (76%), Positives = 17/21 (80%) Query: 126 LTCSFCYTGTQKLVRNLTAEE 146 TC FC+TGTQ LVRNLTA E Sbjct: 36 FTCRFCHTGTQLLVRNLTAAE 56 >gi|218283069|ref|ZP_03489164.1| hypothetical protein EUBIFOR_01750 [Eubacterium biforme DSM 3989] gi|218216138|gb|EEC89676.1| hypothetical protein EUBIFOR_01750 [Eubacterium biforme DSM 3989] Length = 464 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 14/111 (12%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L CS+C+ K + R+L+ G ++ +V S Sbjct: 98 ALCLHIAHTCNLNCSYCFASQGKYHGD-------------RALMSFETGKRALDFLVENS 144 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225 R+ + G GEPL NFD VK+ ++ A + R TL+T+G + Sbjct: 145 GTRRNLEVDFFG-GEPLMNFDVVKQLVAYARSIEKEAGKNFRFTLTTNGML 194 >gi|239831014|ref|ZP_04679343.1| endonuclease III [Ochrobactrum intermedium LMG 3301] gi|239823281|gb|EEQ94849.1| endonuclease III [Ochrobactrum intermedium LMG 3301] Length = 248 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 2/66 (3%) Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM-MGMGEP 190 Y T L RN ILL L R G PG D E + +P VGRK +N+V+ M G+P Sbjct: 100 YIRTIGLWRNKAKNVILLSEALIRDHGGKVPGDRD-ELVKLPGVGRKTANVVLNMAFGQP 158 Query: 191 LCNFDN 196 D Sbjct: 159 TMAVDT 164 >gi|160945445|ref|ZP_02092671.1| hypothetical protein FAEPRAM212_02968 [Faecalibacterium prausnitzii M21/2] gi|158443176|gb|EDP20181.1| hypothetical protein FAEPRAM212_02968 [Faecalibacterium prausnitzii M21/2] Length = 487 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 18/117 (15%) Query: 111 KSRGT----LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166 K+R T LC+ C+L+CS+C+ + + R+L+ G Sbjct: 96 KNRNTVVKALCLHVAHSCNLSCSYCFASQGRYHGD-------------RALMSFEVGKRA 142 Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223 ++ ++ S R+ + G GEPL NFD VKK ++ + + R T++T+G Sbjct: 143 MDFLIENSGTRRNLEVDFFG-GEPLMNFDMVKKLVAYCREQEKIHNKNFRFTMTTNG 198 >gi|303238883|ref|ZP_07325414.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2] gi|302593516|gb|EFL63233.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2] Length = 448 Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust. Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 14/113 (12%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L C +C+ T RS++ G + I+ ++ S Sbjct: 93 ALCLHISHDCNLRCKYCFASTGDFGGQ-------------RSMMSSEVGKKAIDFIIKES 139 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227 RK + + G GEPL NF+ VK+ ++ A + R TL+T+ + N Sbjct: 140 GSRKNLEVDLFG-GEPLMNFEVVKEIVAYAKSKEKEAGKNFRFTLTTNAILLN 191 >gi|28211687|ref|NP_782631.1| septum site-determining protein minD [Clostridium tetani E88] gi|28204129|gb|AAO36568.1| septum site-determining protein minD [Clostridium tetani E88] Length = 265 Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 7/90 (7%) Query: 226 PNIARVGEEIGVM-----LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN-A 279 P + RVG+ + V LAI L + D RNI V NR P+ +L D + N A Sbjct: 176 PEMVRVGDMLAVQDILDSLAIKLIGIVPDDRNITVSTNRGEPI-VLNDNSKSGQAFKNIA 234 Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGI 309 RRIT E V I++ + N +K G+ Sbjct: 235 RRITGEEVPFISIDNDGKGFFNTLKKFFGV 264 >gi|90962847|ref|YP_536762.1| pyruvate formate-lyase activating enzyme [Lactobacillus salivarius UCC118] gi|90822041|gb|ABE00679.1| Pyruvate formate-lyase activating enzyme [Lactobacillus salivarius UCC118] Length = 278 Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust. Identities = 39/187 (20%), Positives = 78/187 (41%), Gaps = 31/187 (16%) Query: 114 GTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 G V+ GC + C FC+ T ++ +T EE+L + L RS GD +G Sbjct: 34 GIRFVAFMQGCHMRCKFCHNPDTWKTRVGSQMTTEEVLNKALPYRSFWGD-------KGG 86 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230 + S G + I +C ++ +S D+ G F++R P ++ Sbjct: 87 ITLSGGEILLQIDFALELFKMCK----EEGISTCLDTCGQPFTRRE---------PWFSK 133 Query: 231 VGE--EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVM 288 E + +L + + +++D L +P + ++D C + + + + +V+ Sbjct: 134 FNELMDYTDILLVDIKHINSDEHKRLT----GFPNDNILDMCEYLSSI--GKPVWIRHVL 187 Query: 289 LKGINDS 295 + GI D+ Sbjct: 188 IPGITDN 194 >gi|295100532|emb|CBK98077.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Faecalibacterium prausnitzii L2-6] Length = 483 Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust. Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 14/111 (12%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L CS+C+ + + R+L+ G ++ ++ S Sbjct: 100 ALCLHVAHTCNLNCSYCFASQGRYQGD-------------RALMSFEVGKRAMDFLIENS 146 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225 R+ + G GEPL NFD VKK ++ + + R T++T+G + Sbjct: 147 GTRRNLEVDFFG-GEPLMNFDMVKKLVAYCREQEKIHNKNFRFTMTTNGML 196 >gi|326204482|ref|ZP_08194339.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782] gi|325985275|gb|EGD46114.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782] Length = 447 Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 19/132 (14%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L C +C+ T + R+++ G + I+ ++ S Sbjct: 93 ALCLHICHDCNLRCKYCFASTGSFGGH-------------RTMMDLETGRKAIDFLIEKS 139 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234 GR+ + G GEPL NFD VK + A S R T++T+ + N +E Sbjct: 140 AGRRNLEVDFFG-GEPLMNFDVVKGIVEYARIREKESGKNFRFTITTNAVLLN-----DE 193 Query: 235 IGVMLAISLHAV 246 I + ++H V Sbjct: 194 IKDFINKNMHNV 205 >gi|301300126|ref|ZP_07206342.1| pyruvate formate-lyase 1-activating enzyme [Lactobacillus salivarius ACS-116-V-Col5a] gi|300215439|gb|ADJ79852.1| Pyruvate formate-lyase activating enzyme [Lactobacillus salivarius CECT 5713] gi|300852300|gb|EFK79968.1| pyruvate formate-lyase 1-activating enzyme [Lactobacillus salivarius ACS-116-V-Col5a] Length = 278 Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust. Identities = 39/187 (20%), Positives = 78/187 (41%), Gaps = 31/187 (16%) Query: 114 GTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 G V+ GC + C FC+ T ++ +T EE+L + L RS GD +G Sbjct: 34 GIRFVAFMQGCHMRCKFCHNPDTWKTRVGSQMTTEEVLNKALPYRSFWGD-------KGG 86 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230 + S G + I +C ++ +S D+ G F++R P ++ Sbjct: 87 ITLSGGEILLQIDFALELFKMCK----EEGISTCLDTCGQPFTRRE---------PWFSK 133 Query: 231 VGE--EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVM 288 E + +L + + +++D L +P + ++D C + + + + +V+ Sbjct: 134 FNELMDYTDILLVDIKHINSDEHKRLT----GFPNDNILDMCEYLSSI--GKPVWIRHVL 187 Query: 289 LKGINDS 295 + GI D+ Sbjct: 188 IPGITDN 194 >gi|238917316|ref|YP_002930833.1| hypothetical protein EUBELI_01391 [Eubacterium eligens ATCC 27750] gi|238872676|gb|ACR72386.1| Hypothetical protein EUBELI_01391 [Eubacterium eligens ATCC 27750] Length = 453 Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust. Identities = 48/188 (25%), Positives = 80/188 (42%), Gaps = 34/188 (18%) Query: 98 GGPVEIETVYIPE----KSRGT----LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149 G + E +Y P K R T LC+ C+L C +C+ AEE Sbjct: 69 AGQLFTEDIYEPYIDNFKDRPTVVKALCLHIAHDCNLACKYCF-----------AEE--G 115 Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209 + R+L+ G + ++ +V S RK + G GEP NF+ VK+ + Sbjct: 116 EYHGRRALMSYEVGKKALDFLVANSGSRKNLEVDFFG-GEPTMNFEVVKQLVEYGRSIEE 174 Query: 210 LSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 + K R TL+T+G + N +EI L + ++ NI++ I+ + + L+ Sbjct: 175 ANNKKFRFTLTTNGILLN-----DEI-------LDFANKEMSNIVLSIDGRKEINDLMRP 222 Query: 270 CRHYPGLS 277 R+ G S Sbjct: 223 TRNNHGSS 230 >gi|300116409|ref|NP_001177849.1| hypothetical protein LOC411983 [Apis mellifera] gi|298569767|gb|ADI87412.1| putative fatty acyl-CoA reductase [Apis mellifera] Length = 541 Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust. Identities = 43/194 (22%), Positives = 84/194 (43%), Gaps = 38/194 (19%) Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKS--------LSI 203 +L LL + PG I +V P G+ + + +PL F+ +K+ ++I Sbjct: 69 ILIEKLLRECPGISFIYMLVRPKKGKDMHQRIEELFDDPL--FNKLKEKHPKFRYQIVAI 126 Query: 204 ASD----SMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINR 259 A D +GLS + R++ + E+ ++ ++ ++ + VPIN Sbjct: 127 AGDCVQPGLGLSSADRQM-------------ITREVSIVFHVAATVRFDEKMKLAVPINV 173 Query: 260 KYPLEMLIDACRHYPGLSNARRITFEY------VMLKGINDSPRDALNLIKILKGIPAKI 313 + P EM ID C+ L + ++ Y ++ + I ++P DA L+ I+ + K+ Sbjct: 174 RSPKEM-IDLCKEISYLKSFVHVSTAYANCPHDLIEEKIYEAPMDANKLVTIIDYMDDKL 232 Query: 314 --NLIP--FNPWPG 323 ++ P WP Sbjct: 233 VEDITPKLLGAWPN 246 >gi|167629098|ref|YP_001679597.1| radical sam protein, putative [Heliobacterium modesticaldum Ice1] gi|167591838|gb|ABZ83586.1| radical sam protein, putative [Heliobacterium modesticaldum Ice1] Length = 470 Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 14/90 (15%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L C +C+ GT + RSL+ G + ++ ++ S Sbjct: 111 ALCLHVAHDCNLRCGYCFAGTGPFGGD-------------RSLMPVETGKQAVDFLLAHS 157 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIA 204 GR+ I G GEPL N D VK+ ++ A Sbjct: 158 QGRRHVEIDFFG-GEPLLNVDVVKELVAYA 186 >gi|260886817|ref|ZP_05898080.1| putative radical SAM domain protein [Selenomonas sputigena ATCC 35185] gi|330839376|ref|YP_004413956.1| Radical SAM domain protein [Selenomonas sputigena ATCC 35185] gi|260863416|gb|EEX77916.1| putative radical SAM domain protein [Selenomonas sputigena ATCC 35185] gi|329747140|gb|AEC00497.1| Radical SAM domain protein [Selenomonas sputigena ATCC 35185] Length = 590 Score = 37.0 bits (84), Expect = 5.0, Method: Compositional matrix adjust. Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTG-TQKLVRNLTAEEILLQV 151 +P+K+R LC+ + GC C+FCY G + VR + E +L ++ Sbjct: 180 LPQKNRRDLCIMTGRGCPFRCAFCYEGRSSGKVRFRSVENVLEEI 224 >gi|170754837|ref|YP_001782699.1| radical SAM domain-containing protein [Clostridium botulinum B1 str. Okra] gi|169120049|gb|ACA43885.1| radical SAM domain protein [Clostridium botulinum B1 str. Okra] Length = 455 Score = 36.6 bits (83), Expect = 6.4, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 21/127 (16%) Query: 106 VYIPEKSRG---TLCVSSQVGCSLTCSFCYT--GTQKLVRNLTAEEILLQVLLARSLLGD 160 Y EKS LC++ C+L C +C+ G K R L + E+ Sbjct: 84 AYAHEKSENFIKALCLNIAHDCNLRCKYCFADEGEYKGKRELMSPEV------------- 130 Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLS 220 G + I+ ++ S RK + + G GEPL F +K+ + A + R T++ Sbjct: 131 --GKKAIDFVIEKSGPRKNIEVDLFG-GEPLMAFSTIKEIVEYAKEQEEKHNKTIRFTMT 187 Query: 221 TSGFVPN 227 T+G + N Sbjct: 188 TNGTLLN 194 >gi|207111233|ref|ZP_03245395.1| hypothetical protein HpylH_19398 [Helicobacter pylori HPKX_438_CA4C1] Length = 54 Score = 36.6 bits (83), Expect = 6.6, Method: Composition-based stats. Identities = 17/37 (45%), Positives = 25/37 (67%) Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 + +NDS A L+K+L GI +K+NLI FNP G ++ Sbjct: 1 RDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKF 37 >gi|226323829|ref|ZP_03799347.1| hypothetical protein COPCOM_01604 [Coprococcus comes ATCC 27758] gi|225208013|gb|EEG90367.1| hypothetical protein COPCOM_01604 [Coprococcus comes ATCC 27758] Length = 85 Score = 36.6 bits (83), Expect = 6.8, Method: Compositional matrix adjust. Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K+ + EEL+E +L IG R+ QI+ WI+ + + DF+ M+++ + +R Sbjct: 1 MEKKDIASYSFEELQEEMLAIG----EKGFRSRQIYSWIHEKLVDDFEEMTNLPKTLRQK 56 Query: 64 LNQHFSI 70 L + I Sbjct: 57 LESAYEI 63 >gi|310792856|gb|EFQ28317.1| pentatricopeptide repeat domain-containing protein [Glomerella graminicola M1.001] Length = 721 Score = 36.6 bits (83), Expect = 7.1, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 9/76 (11%) Query: 1 MNFLKK---ESLIGMMREELEEALLKIGI------PQRHVRMRTSQIWKWIYVRGIRDFQ 51 ++FL K + L G R EAL K I PQ+HVR+R + I+ I I + Sbjct: 154 IHFLAKWQRQKLAGEKRTSHAEALCKFVITIINKTPQKHVRIRQNTIYNLIRTTSIEGIE 213 Query: 52 GMSDISQEVRHLLNQH 67 + +E RH L++H Sbjct: 214 ALYHCLKEYRHNLHRH 229 >gi|167770639|ref|ZP_02442692.1| hypothetical protein ANACOL_01985 [Anaerotruncus colihominis DSM 17241] gi|167667234|gb|EDS11364.1| hypothetical protein ANACOL_01985 [Anaerotruncus colihominis DSM 17241] Length = 457 Score = 36.6 bits (83), Expect = 7.2, Method: Compositional matrix adjust. Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 18/139 (12%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 +C+ C+L C +C+ T + + + R L+ G I+ ++ S Sbjct: 98 AMCLHIAHDCNLRCKYCFADTGEYMGH-------------RELMSPETGRAAIDYLIDHS 144 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-- 232 GR + + G GEPL NF+ V++ + A R T++T+G + + ++ Sbjct: 145 AGRHNLEVDLFG-GEPLMNFETVREVVRYARSLEKKHGKLFRFTITTNGILLDDDKIDFI 203 Query: 233 --EEIGVMLAISLHAVSND 249 E V+L+I ND Sbjct: 204 NQEMSNVVLSIDGRREVND 222 >gi|295105390|emb|CBL02934.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Faecalibacterium prausnitzii SL3/3] Length = 486 Score = 36.6 bits (83), Expect = 7.5, Method: Compositional matrix adjust. Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 18/117 (15%) Query: 111 KSRGT----LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166 K+R T LC+ C+L+CS+C+ + + R+L+ G Sbjct: 92 KNRNTVVKALCLHVAHSCNLSCSYCFASQGRYHGD-------------RALMSFEVGKRA 138 Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223 ++ ++ S R+ + G GEPL NF+ VKK ++ + + R T++T+G Sbjct: 139 MDFLIENSGTRRNLEVDFFG-GEPLMNFEMVKKLVAYCREQEKIHNKNFRFTMTTNG 194 >gi|300855530|ref|YP_003780514.1| FeMo cofactor biosynthesis protein NifB [Clostridium ljungdahlii DSM 13528] gi|300435645|gb|ADK15412.1| FeMo cofactor biosynthesis protein NifB [Clostridium ljungdahlii DSM 13528] Length = 423 Score = 36.6 bits (83), Expect = 7.6, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 18/127 (14%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+++C+FC + N T + +VL F ++ R ++ + Sbjct: 38 CNVSCNFCNRKYDCV--NETRPGVTSEVLTPEGARDKFK--------IVRDKVRNLTVVG 87 Query: 184 MMGMGEPLCNFDNVKKSLS-IASDSMGLSFSKRRITLSTSGF-VPNIARVGEEIGVM-LA 240 + G G+PL NFD KKS+ I +S ++F LST+G +P A E+GV L Sbjct: 88 IAGPGDPLANFDETKKSIELIKKESKDITF-----CLSTNGLMLPFYADKLIELGVTHLT 142 Query: 241 ISLHAVS 247 ++++AV Sbjct: 143 VTINAVD 149 >gi|229828664|ref|ZP_04454733.1| hypothetical protein GCWU000342_00730 [Shuttleworthia satelles DSM 14600] gi|229793258|gb|EEP29372.1| hypothetical protein GCWU000342_00730 [Shuttleworthia satelles DSM 14600] Length = 476 Score = 36.2 bits (82), Expect = 8.2, Method: Compositional matrix adjust. Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 13/113 (11%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC++ C+L C +C+ R L+ G + ++ S Sbjct: 98 ALCLNVAHDCNLACKYCFADEGTYCGG------------PRELMSFETGKNAFDFLIANS 145 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227 R+ + G GEPL N++ VKK ++ L K R TL+T+G + N Sbjct: 146 GNRRNLEVDFFG-GEPLMNWEVVKKLVAYGRQEEKLYDKKFRFTLTTNGVLLN 197 >gi|187778355|ref|ZP_02994828.1| hypothetical protein CLOSPO_01947 [Clostridium sporogenes ATCC 15579] gi|187771980|gb|EDU35782.1| hypothetical protein CLOSPO_01947 [Clostridium sporogenes ATCC 15579] Length = 446 Score = 36.2 bits (82), Expect = 10.0, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 21/127 (16%) Query: 106 VYIPEKSRG---TLCVSSQVGCSLTCSFCYT--GTQKLVRNLTAEEILLQVLLARSLLGD 160 Y EKS LC++ C+L C +C+ G K R L + +I Sbjct: 75 AYAHEKSENFIKALCLNIAHDCNLRCKYCFADEGEYKGKRELMSPQI------------- 121 Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLS 220 G + I+ ++ S RK + + G GEPL F +K+ + A + R T++ Sbjct: 122 --GKKAIDFVIEKSGPRKNIEVDLFG-GEPLMAFSTIKEIVEYAKEQEKKHNKTIRFTMT 178 Query: 221 TSGFVPN 227 T+G + N Sbjct: 179 TNGTLLN 185 Searching..................................................done Results from round 2 >gi|254781120|ref|YP_003065533.1| radical SAM protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040797|gb|ACT57593.1| radical SAM protein [Candidatus Liberibacter asiaticus str. psy62] Length = 384 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 384/384 (100%), Positives = 384/384 (100%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV Sbjct: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS Sbjct: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS Sbjct: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA Sbjct: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL Sbjct: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA Sbjct: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 Query: 361 ACGQLKSLSKRIPKVPRQEMQITG 384 ACGQLKSLSKRIPKVPRQEMQITG Sbjct: 361 ACGQLKSLSKRIPKVPRQEMQITG 384 >gi|227823764|ref|YP_002827737.1| putative radical SAM enzyme, Cfr family [Sinorhizobium fredii NGR234] gi|259491994|sp|C3MAJ1|RLMN_RHISN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|227342766|gb|ACP26984.1| putative radical SAM enzyme, Cfr family [Sinorhizobium fredii NGR234] Length = 411 Score = 525 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 256/377 (67%), Positives = 316/377 (83%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K SLIG++RE++ + L++ G+P+R V+MR SQ+W W+YVRG+ DF MS++S+++R +L Sbjct: 25 EKPSLIGLLREDMAKLLVEKGVPERQVKMRVSQLWHWLYVRGVSDFDQMSNVSKDMREML 84 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +HF++ PEIV+E++S DGTRKWLLRFP R G PVEIETVYIPE+ RGTLC+SSQVGC Sbjct: 85 KEHFTVARPEIVEEQVSGDGTRKWLLRFPPRGAGRPVEIETVYIPEEGRGTLCISSQVGC 144 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +LTCSFC+TGTQKLVRNLTAEEIL Q+LLAR LGDFP + +G ++P+ GRKI+NIVM Sbjct: 145 TLTCSFCHTGTQKLVRNLTAEEILAQLLLARDRLGDFPERDTPQGAIVPAEGRKITNIVM 204 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNVK +L IASD GLS SKRRITLSTSG VP I R GEEIGVMLAISLH Sbjct: 205 MGMGEPLYNFDNVKTALLIASDGDGLSLSKRRITLSTSGIVPEIYRTGEEIGVMLAISLH 264 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV+++LR++LVPIN+KYPL+ L++ACR YPGLSNARRITFEYVMLK +NDS +DA L+K Sbjct: 265 AVNDELRDMLVPINKKYPLKELMEACRAYPGLSNARRITFEYVMLKDVNDSLQDAKELVK 324 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGIPAKINLIPFNPWPG Y CSD + I F++ I ++GY+SPIRTPRG DILAACGQ Sbjct: 325 LLKGIPAKINLIPFNPWPGTNYQCSDWEQIEAFADFINQAGYASPIRTPRGRDILAACGQ 384 Query: 365 LKSLSKRIPKVPRQEMQ 381 LKS S+R+ KV R + Sbjct: 385 LKSESERMRKVDRLAFE 401 >gi|110635192|ref|YP_675400.1| radical SAM protein [Mesorhizobium sp. BNC1] gi|122965694|sp|Q11EE0|RLMN_MESSB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|110286176|gb|ABG64235.1| 23S rRNA m(2)A-2503 methyltransferase [Chelativorans sp. BNC1] Length = 408 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 255/379 (67%), Positives = 312/379 (82%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 ++K+ LIG+ REE+ +AL IG+P+R V MR Q+W W+YVRG+ DF M +IS+E+R Sbjct: 21 TVEKKPLIGLSREEMAQALASIGVPERQVNMRVRQLWHWLYVRGVSDFSRMFNISKELRA 80 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L++HF+I PEIV+E+IS DGTRKWLLRFP R G PVE+ETVYIPE+ RGTLC+SSQV Sbjct: 81 KLDEHFTIARPEIVEEQISQDGTRKWLLRFPPRGAGRPVEVETVYIPEEDRGTLCISSQV 140 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+LTCSFC+TGTQK+VRNLTA EIL Q+L+AR LGDFP + +G ++P+ GRKI+NI Sbjct: 141 GCTLTCSFCHTGTQKMVRNLTAGEILDQLLIARDRLGDFPDADTPDGAIVPAEGRKITNI 200 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL NF+NVK++L +ASD GLS SKRRITLSTSG VP I R GEEIG+MLAIS Sbjct: 201 VMMGMGEPLYNFENVKQALLVASDGDGLSLSKRRITLSTSGVVPEIYRTGEEIGIMLAIS 260 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHAV ++LRN LVPIN+KYPL+ L+DACR YPGLSNARRITFEYVMLKG+NDS DA L Sbjct: 261 LHAVRDELRNELVPINKKYPLKDLLDACRAYPGLSNARRITFEYVMLKGVNDSLDDAREL 320 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +++LKGIPAKINLIPFNPWPG Y CSD + I F+E + R+GY+SPIRTPRG DILAAC Sbjct: 321 VRLLKGIPAKINLIPFNPWPGSAYECSDWEQIEKFAELVNRAGYASPIRTPRGRDILAAC 380 Query: 363 GQLKSLSKRIPKVPRQEMQ 381 GQLKS S+R+ K R +++ Sbjct: 381 GQLKSASERMKKTERLKLE 399 >gi|315122584|ref|YP_004063073.1| radical SAM protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495986|gb|ADR52585.1| radical SAM protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 389 Score = 524 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 328/383 (85%), Positives = 359/383 (93%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN +KKESLIGM REE+EE+LLKIG+P VRMRTSQIWKWIYVRG+RDF MSDIS+E+ Sbjct: 1 MNIVKKESLIGMTREEIEESLLKIGVPPIQVRMRTSQIWKWIYVRGVRDFHFMSDISKEI 60 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R LL+QHF+I+YPEIVDEKISCDGTRKWLLRFPARCIG PV+IETVYIPEKSRGTLCVSS Sbjct: 61 RCLLDQHFAIVYPEIVDEKISCDGTRKWLLRFPARCIGDPVDIETVYIPEKSRGTLCVSS 120 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGCSLTCSFCYTGTQ+LVRNLT EEILLQ+LL RSLLGDFPGCED+ MV+P VGRK+S Sbjct: 121 QVGCSLTCSFCYTGTQQLVRNLTVEEILLQILLVRSLLGDFPGCEDMTEMVVPLVGRKVS 180 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 NIVMMGMGEPLCNFDNVKK+L IASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA Sbjct: 181 NIVMMGMGEPLCNFDNVKKALLIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ISLHAV NDLRNILVPIN+KYPLEML+DACR+YPGLSN+RRITFEYVMLKGINDSPRDA+ Sbjct: 241 ISLHAVKNDLRNILVPINKKYPLEMLMDACRNYPGLSNSRRITFEYVMLKGINDSPRDAI 300 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 LIK+LKGIPAKINLIPFNPWPGC+YLCSDQKDI FSE +K+SGYSSPIRTPRGLDI A Sbjct: 301 ELIKLLKGIPAKINLIPFNPWPGCDYLCSDQKDIEIFSEYVKKSGYSSPIRTPRGLDIFA 360 Query: 361 ACGQLKSLSKRIPKVPRQEMQIT 383 ACGQLKSLSKR+P++ ++ QIT Sbjct: 361 ACGQLKSLSKRVPRISSKQAQIT 383 >gi|118592064|ref|ZP_01549458.1| hypothetical protein SIAM614_25347 [Stappia aggregata IAM 12614] gi|118435360|gb|EAV42007.1| hypothetical protein SIAM614_25347 [Stappia aggregata IAM 12614] Length = 407 Score = 524 bits (1350), Expect = e-147, Method: Composition-based stats. Identities = 252/379 (66%), Positives = 311/379 (82%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K +LIG+ REEL EAL IG+PQ+ RMR SQ+W W+YVRG+ DF M++I++++R L Sbjct: 29 DKPTLIGLSREELGEALGTIGVPQKQWRMRASQLWHWLYVRGVSDFAQMTNIAKDLRQKL 88 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 ++ F+I PEIV E+IS DGTRKWL RFPAR G PVE+ETVYIPE+ RGTLCVSSQVGC Sbjct: 89 DEAFTIARPEIVSEQISVDGTRKWLFRFPARGAGRPVEVETVYIPEEGRGTLCVSSQVGC 148 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +LTC+FC+TGTQK+VRNLTAEEIL Q+L+AR LGDFP + +G ++PS GR ++NIVM Sbjct: 149 TLTCTFCHTGTQKMVRNLTAEEILSQILIARDRLGDFPHADTPQGAIVPSEGRLVTNIVM 208 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNVKK+L IASD GLS SKRRITLSTSG VP I R GEEIG MLAISLH Sbjct: 209 MGMGEPLYNFDNVKKALLIASDGDGLSLSKRRITLSTSGVVPEIFRTGEEIGCMLAISLH 268 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV ++LR++LVPIN+K+ ++ L+DACR YPGLSNA+RITFEYVMLKG+NDS +DAL L++ Sbjct: 269 AVRDELRDVLVPINKKWNIKELLDACRQYPGLSNAKRITFEYVMLKGVNDSNKDALELVR 328 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGIPAKINLIPFNPWPG +Y CSD + I F++ + R+GY+SPIRTPRG DI AACGQ Sbjct: 329 LLKGIPAKINLIPFNPWPGTDYECSDWERIEEFADIVNRAGYASPIRTPRGRDIFAACGQ 388 Query: 365 LKSLSKRIPKVPRQEMQIT 383 LKS S+R+ K R+ + + Sbjct: 389 LKSASERMRKKDREALAAS 407 >gi|114705378|ref|ZP_01438286.1| hypothetical protein FP2506_10576 [Fulvimarina pelagi HTCC2506] gi|114540163|gb|EAU43283.1| hypothetical protein FP2506_10576 [Fulvimarina pelagi HTCC2506] Length = 407 Score = 522 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 246/378 (65%), Positives = 305/378 (80%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 ++ SLIGM REEL EAL +G+P + VRMRT+Q+W W+YVRG+ DF M+++S+++R+ L Sbjct: 28 ERTSLIGMSREELGEALAAVGVPAKQVRMRTAQLWHWLYVRGVSDFAHMANVSKDLRNKL 87 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + ++I PEIV E++S DGTRKW+ RFP R G PVEIETVYIPE+ RGTLCVSSQVGC Sbjct: 88 DAAYTIARPEIVTEQVSVDGTRKWVFRFPPRGAGRPVEIETVYIPEEGRGTLCVSSQVGC 147 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +LTC+FC+TGTQ+LVRNLTA EI+ QVLLAR LGDFP + G ++PS GR +SN+VM Sbjct: 148 TLTCTFCHTGTQRLVRNLTAGEIVSQVLLARERLGDFPDVDTPAGAIVPSEGRLVSNVVM 207 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV +L + SD GLS SKRRITLSTSG VP I R GEE GVMLAISLH Sbjct: 208 MGMGEPLYNFDNVATALGVISDGEGLSVSKRRITLSTSGVVPEIVRAGEETGVMLAISLH 267 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV+++LR+ LVPIN+KYPL L++ACR+YPGLSNA+RITFEYVMLKG+NDS DA NL++ Sbjct: 268 AVNDELRDELVPINKKYPLATLLEACRNYPGLSNAKRITFEYVMLKGVNDSMEDARNLVR 327 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGIPAKINLIPFNPWPG Y CSD I F++ + ++GY+SPIRTPRG DI AACGQ Sbjct: 328 MLKGIPAKINLIPFNPWPGSRYECSDWDQIERFADYVNQAGYASPIRTPRGRDIFAACGQ 387 Query: 365 LKSLSKRIPKVPRQEMQI 382 LKS S+R+ K R +++ Sbjct: 388 LKSESERMRKKDRDRIEL 405 >gi|13473680|ref|NP_105248.1| hypothetical protein mlr4359 [Mesorhizobium loti MAFF303099] gi|81778968|sp|Q98E86|RLMN_RHILO RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|14024431|dbj|BAB51034.1| mlr4359 [Mesorhizobium loti MAFF303099] Length = 410 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 259/384 (67%), Positives = 308/384 (80%), Gaps = 4/384 (1%) Query: 5 KKESLIGMMREELEEALLKIG-IPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +K SLIG+ R EL EAL+ G +P+R +MR Q+W W+YVRG+ DF GM +IS+++R Sbjct: 23 EKPSLIGLTRAELGEALVASGIVPERQAKMRAQQLWHWMYVRGVSDFAGMFNISKDLRAE 82 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L++HF++ PEIV+E+IS DGTRKWL RFP R G PVEIETVYIPE+ RGTLC+SSQVG Sbjct: 83 LDKHFTVARPEIVEEQISSDGTRKWLFRFPPRGAGRPVEIETVYIPEEGRGTLCISSQVG 142 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+LTCSFC+TGTQKLVRNLT EEIL Q+L AR LGDFP + +G ++P+ GRK+SNIV Sbjct: 143 CTLTCSFCHTGTQKLVRNLTTEEILAQLLTARDRLGDFPDRDTPDGAIVPAEGRKVSNIV 202 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R GEEIGVMLAISL Sbjct: 203 MMGMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVVPEIFRTGEEIGVMLAISL 262 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA ++DLR++LVPIN+KYPL+ LI ACR YPGLSNA+RITFEYVMLK +NDS DA LI Sbjct: 263 HATNDDLRDLLVPINKKYPLKELIAACRAYPGLSNAKRITFEYVMLKDVNDSIEDAKGLI 322 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+LKGIPAKINLIPFNPWPG Y CSD + I F++ I +GY+SPIRTPRG DILAACG Sbjct: 323 KLLKGIPAKINLIPFNPWPGTNYQCSDWETIEKFADYINNAGYASPIRTPRGRDILAACG 382 Query: 364 QLKSLSKRIPKVPR---QEMQITG 384 QLKS S+R+ KV R + M I G Sbjct: 383 QLKSESERMRKVDRLALEAMMIAG 406 >gi|260467307|ref|ZP_05813481.1| radical SAM enzyme, Cfr family [Mesorhizobium opportunistum WSM2075] gi|259028911|gb|EEW30213.1| radical SAM enzyme, Cfr family [Mesorhizobium opportunistum WSM2075] Length = 466 Score = 521 bits (1342), Expect = e-146, Method: Composition-based stats. Identities = 261/384 (67%), Positives = 309/384 (80%), Gaps = 4/384 (1%) Query: 5 KKESLIGMMREELEEALLKIG-IPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +K SLIG+ R EL EAL+ G +P+R +MR Q+W W+YVRG+ DF GM +IS+++R Sbjct: 79 EKPSLIGLTRAELGEALVASGIVPERQAKMRAQQLWHWMYVRGVSDFAGMFNISKDLRAE 138 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L++HF++ PEIV+E+IS DGTRKWL RFP R G PVEIETVYIPE+ RGTLC+SSQVG Sbjct: 139 LDKHFTVARPEIVEEQISADGTRKWLFRFPPRGAGRPVEIETVYIPEEGRGTLCISSQVG 198 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+LTCSFC+TGTQKLVRNLTAEEIL Q+L AR LGDFP + +G ++P+ GRK+SNIV Sbjct: 199 CTLTCSFCHTGTQKLVRNLTAEEILAQLLTARDRLGDFPDRDTPDGAIVPAEGRKVSNIV 258 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R GEEIGVMLAISL Sbjct: 259 MMGMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVVPEIFRTGEEIGVMLAISL 318 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA ++DLR++LVPIN+KYPL+ LI ACR YPGLSNARRITFEYVMLK +NDS DA LI Sbjct: 319 HATNDDLRDLLVPINKKYPLKDLIAACRAYPGLSNARRITFEYVMLKDVNDSIEDAKGLI 378 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+LKGIPAKINLIPFNPWPG Y CSD + I F++ I +GY+SPIRTPRG DILAACG Sbjct: 379 KLLKGIPAKINLIPFNPWPGTNYQCSDWETIEKFADYINNAGYASPIRTPRGRDILAACG 438 Query: 364 QLKSLSKRIPKVPR---QEMQITG 384 QLKS S+R+ KV R + M I G Sbjct: 439 QLKSESERMRKVDRLALEAMMIAG 462 >gi|150398262|ref|YP_001328729.1| radical SAM protein [Sinorhizobium medicae WSM419] gi|205829889|sp|A6UE14|RLMN_SINMW RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|150029777|gb|ABR61894.1| radical SAM enzyme, Cfr family [Sinorhizobium medicae WSM419] Length = 413 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 256/377 (67%), Positives = 314/377 (83%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K SLIG++RE++ + L++ G+P+R V+MR SQ+W W+YVRG+ DF MS++S+++R +L Sbjct: 27 EKPSLIGLLREDMAKLLVEKGVPERQVKMRVSQVWHWLYVRGVSDFNEMSNVSKDMREML 86 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + HF+I PEIV+E++S DGTRKWLLRFP R G PVEIETVYIPE+ RGTLC+SSQVGC Sbjct: 87 SAHFTIARPEIVEEQVSGDGTRKWLLRFPPRGAGRPVEIETVYIPEEGRGTLCISSQVGC 146 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +LTCSFC+TGTQKLVRNLTAEEIL Q+LLAR LGDFP + +G ++P+ GRKI+N+VM Sbjct: 147 TLTCSFCHTGTQKLVRNLTAEEILAQLLLARDRLGDFPDRDTPQGAIVPAEGRKITNVVM 206 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NF+NVK +L IASD GLS SKRRITLSTSG VP I R GEEIGVMLAISLH Sbjct: 207 MGMGEPLYNFENVKTALLIASDGDGLSLSKRRITLSTSGIVPEIYRTGEEIGVMLAISLH 266 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV +DLR++LVPIN+KYPL+ L++ACR YPGLSNARRITFEYVMLK +NDS DA L+K Sbjct: 267 AVRDDLRDMLVPINKKYPLKELMEACRAYPGLSNARRITFEYVMLKDVNDSLEDAKELVK 326 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGIPAKINLIPFNPWPG Y CSD + I F++ I ++GY+SPIRTPRG DILAACGQ Sbjct: 327 LLKGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINQAGYASPIRTPRGRDILAACGQ 386 Query: 365 LKSLSKRIPKVPRQEMQ 381 LKS S+R+ KV R + Sbjct: 387 LKSDSERMRKVDRLAFE 403 >gi|62289063|ref|YP_220856.1| hypothetical protein BruAb1_0077 [Brucella abortus bv. 1 str. 9-941] gi|82699000|ref|YP_413574.1| hypothetical protein BAB1_0074 [Brucella melitensis biovar Abortus 2308] gi|189023336|ref|YP_001934104.1| hypothetical protein BAbS19_I00700 [Brucella abortus S19] gi|237814550|ref|ZP_04593548.1| radical SAM enzyme, Cfr family [Brucella abortus str. 2308 A] gi|254690389|ref|ZP_05153643.1| hypothetical protein Babob68_09499 [Brucella abortus bv. 6 str. 870] gi|254696506|ref|ZP_05158334.1| hypothetical protein Babob28_02005 [Brucella abortus bv. 2 str. 86/8/59] gi|254731419|ref|ZP_05189997.1| hypothetical protein Babob42_09524 [Brucella abortus bv. 4 str. 292] gi|256258643|ref|ZP_05464179.1| hypothetical protein Babob9C_15111 [Brucella abortus bv. 9 str. C68] gi|260546356|ref|ZP_05822096.1| ribosomal RNA large subunit methyltransferase N [Brucella abortus NCTC 8038] gi|260755934|ref|ZP_05868282.1| radical SAM protein [Brucella abortus bv. 6 str. 870] gi|260759158|ref|ZP_05871506.1| radical SAM protein [Brucella abortus bv. 4 str. 292] gi|260760882|ref|ZP_05873225.1| radical SAM protein [Brucella abortus bv. 2 str. 86/8/59] gi|260884958|ref|ZP_05896572.1| ribosomal RNA large subunit methyltransferase N [Brucella abortus bv. 9 str. C68] gi|297247480|ref|ZP_06931198.1| cfr family radical SAM enzyme [Brucella abortus bv. 5 str. B3196] gi|75497518|sp|Q57FT9|RLMN_BRUAB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123740915|sp|Q2YNV3|RLMN_BRUA2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807157|sp|B2S7X6|RLMN_BRUA1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|62195195|gb|AAX73495.1| conserved hypothetical protein TIGR00048 [Brucella abortus bv. 1 str. 9-941] gi|82615101|emb|CAJ10030.1| Cytochrome c heme-binding site:Conserved hypothetical protein 48:Radical SAM [Brucella melitensis biovar Abortus 2308] gi|189018908|gb|ACD71630.1| Conserved hypothetical protein 48 [Brucella abortus S19] gi|237789387|gb|EEP63597.1| radical SAM enzyme, Cfr family [Brucella abortus str. 2308 A] gi|260096463|gb|EEW80339.1| ribosomal RNA large subunit methyltransferase N [Brucella abortus NCTC 8038] gi|260669476|gb|EEX56416.1| radical SAM protein [Brucella abortus bv. 4 str. 292] gi|260671314|gb|EEX58135.1| radical SAM protein [Brucella abortus bv. 2 str. 86/8/59] gi|260676042|gb|EEX62863.1| radical SAM protein [Brucella abortus bv. 6 str. 870] gi|260874486|gb|EEX81555.1| ribosomal RNA large subunit methyltransferase N [Brucella abortus bv. 9 str. C68] gi|297174649|gb|EFH33996.1| cfr family radical SAM enzyme [Brucella abortus bv. 5 str. B3196] Length = 411 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 256/382 (67%), Positives = 306/382 (80%), Gaps = 3/382 (0%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIGM REE+ AL+ G+P+R V+MR SQ+W W+YVRG+ DF M +IS+++R +L Sbjct: 27 KPSLIGMSREEMAAALIAAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 QHF+I PE+V+E+IS DGTRKWL RFP R G PVEIE+VYIPE+ RGTLC+SSQVGC+ Sbjct: 87 QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCISSQVGCT 146 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLT+EEIL Q+L AR LGDFP + +G ++P+ GRKI+NIVMM Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+ VKK+L IASD GLS SK RITLSTSG VP I R G+EIGVMLAISLHA Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKCRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V ++LR+ILVPIN+KYPL LI ACR YPGLSNA+RITFEYVMLK INDS DA L+K+ Sbjct: 267 VRDELRDILVPINKKYPLAELIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKL 326 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+GIPAKINLIPFNPWPG Y CSD + I F++ + +GY+SPIRTPRG DILAACGQL Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386 Query: 366 KSLSKRIPKVPR---QEMQITG 384 KS S+R+ K R + M I G Sbjct: 387 KSESERLRKSERLALEAMMIAG 408 >gi|153007435|ref|YP_001368650.1| radical SAM protein [Ochrobactrum anthropi ATCC 49188] gi|205829793|sp|A6WV17|RLMN_OCHA4 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|151559323|gb|ABS12821.1| radical SAM enzyme, Cfr family [Ochrobactrum anthropi ATCC 49188] Length = 411 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 260/382 (68%), Positives = 310/382 (81%), Gaps = 3/382 (0%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIGM REE+ EAL+K G+P+R V+MR SQ+W W+YVRG+ DF M +IS+++R +L Sbjct: 27 KPSLIGMSREEMAEALIKAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 QHF+I PE+V+E+IS DGTRKWL RFP R G PVEIE+VYIPE+ RGTLCVSSQVGC+ Sbjct: 87 QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCVSSQVGCT 146 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLT+EEIL Q+L AR LGDFP + +G ++P+ GRKI+NIVMM Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V ++LR+ILVPIN+KYPLE LI ACR YPGLSNA+RITFEYVMLK INDS DA L+K+ Sbjct: 267 VRDELRDILVPINKKYPLEQLIKACREYPGLSNAKRITFEYVMLKDINDSLEDAKLLVKL 326 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+GIPAKINLIPFNPWPG Y CS+ + I F++ + +GY+SPIRTPRG DILAACGQL Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSEWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386 Query: 366 KSLSKRIPKVPR---QEMQITG 384 KS S+R+ K R + M I G Sbjct: 387 KSESERMRKSERLALEAMMIAG 408 >gi|239830929|ref|ZP_04679258.1| radical SAM enzyme, Cfr family [Ochrobactrum intermedium LMG 3301] gi|239823196|gb|EEQ94764.1| radical SAM enzyme, Cfr family [Ochrobactrum intermedium LMG 3301] Length = 411 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 259/382 (67%), Positives = 310/382 (81%), Gaps = 3/382 (0%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIGM REE+ +AL+K+G+P+R +MR SQ+W W+YVRG+ DF M +IS+++R LL Sbjct: 27 KPSLIGMSREEMAQALIKVGVPERQTKMRISQLWHWLYVRGVSDFADMRNISKDLRALLA 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 QHF+I PE+V+E+IS DGTRKWL RFP R G PVEIE+VYIPE+ RGTLC+SSQVGC+ Sbjct: 87 QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCISSQVGCT 146 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLT+EEIL Q+L AR LGDFP + +G ++P+ GRKI+NIVMM Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V ++LR+ILVPIN+KYPLE LI ACR YPGLSNA+RITFEYVMLK INDS DA L+K+ Sbjct: 267 VRDELRDILVPINKKYPLEQLIKACREYPGLSNAKRITFEYVMLKDINDSLEDAKLLVKL 326 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+GIPAKINLIPFNPWPG Y CSD + I F++ + +GY+SPIRTPRG DILAACGQL Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386 Query: 366 KSLSKRIPKVPR---QEMQITG 384 KS S+R+ K R + M I G Sbjct: 387 KSESERMRKSERLALEAMMIAG 408 >gi|325294043|ref|YP_004279907.1| Ribosomal RNA large subunit methyltransferase N [Agrobacterium sp. H13-3] gi|325061896|gb|ADY65587.1| Ribosomal RNA large subunit methyltransferase N [Agrobacterium sp. H13-3] Length = 412 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 252/376 (67%), Positives = 306/376 (81%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIGM REE+ EAL +IG+PQ+ V+MR SQ+W W+YVRG+ DF M+++++E+R L Sbjct: 26 KPSLIGMTREEMGEALAEIGVPQKQVKMRVSQLWNWLYVRGVSDFDNMTNVAKELREKLK 85 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F+I PEIV+E+IS DGTRKWL+RFP R G PVEIETVYIPE+ RGTLC+SSQVGCS Sbjct: 86 AAFTIARPEIVEEQISNDGTRKWLMRFPPRGAGRPVEIETVYIPEEGRGTLCISSQVGCS 145 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR LGDFP G +PS GRK+SNIVMM Sbjct: 146 LTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDGSTPVGAYVPSEGRKVSNIVMM 205 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF++VK +L IA+D GLS SKRR+TLSTSG VP I R G+EIGVMLAISLHA Sbjct: 206 GMGEPLYNFEHVKTALLIATDGDGLSLSKRRVTLSTSGVVPEIFRTGDEIGVMLAISLHA 265 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V +DLR++LVPIN+KYPL+ LI+ACR+YPG+SNARRITFEYVMLK +NDS DA L+++ Sbjct: 266 VRDDLRDMLVPINKKYPLKELIEACRNYPGVSNARRITFEYVMLKDVNDSLEDAKMLVQL 325 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G+PAKINLIPFNPWPG Y CS+ I F++ I ++GY+SPIRTPRG DILAACGQL Sbjct: 326 LRGVPAKINLIPFNPWPGTNYQCSEWAQIEKFADFINQAGYASPIRTPRGRDILAACGQL 385 Query: 366 KSLSKRIPKVPRQEMQ 381 KS S+R+ K R + Sbjct: 386 KSESERMRKTERLAFE 401 >gi|15966967|ref|NP_387320.1| hypothetical protein SMc03831 [Sinorhizobium meliloti 1021] gi|307301740|ref|ZP_07581499.1| radical SAM enzyme, Cfr family [Sinorhizobium meliloti BL225C] gi|307316235|ref|ZP_07595679.1| radical SAM enzyme, Cfr family [Sinorhizobium meliloti AK83] gi|81633717|sp|Q92L68|RLMN_RHIME RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|15076240|emb|CAC47793.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021] gi|306898075|gb|EFN28817.1| radical SAM enzyme, Cfr family [Sinorhizobium meliloti AK83] gi|306903438|gb|EFN34027.1| radical SAM enzyme, Cfr family [Sinorhizobium meliloti BL225C] Length = 411 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 255/377 (67%), Positives = 313/377 (83%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K SLIG++R+++ + L + G+P+R V+MR SQ+W W+YVRG+ DF MS++S+++R +L Sbjct: 25 EKPSLIGLLRDDIAKLLAEKGVPERQVKMRVSQLWHWLYVRGVSDFDEMSNVSKDMREML 84 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +HF+I P+IV+E++S DGTRKWLLRFP R G PVEIETVYIPE+ RGTLC+SSQVGC Sbjct: 85 KEHFTIARPDIVEEQVSGDGTRKWLLRFPPRGAGRPVEIETVYIPEEGRGTLCISSQVGC 144 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +LTCSFC+TGTQKLVRNLTAEEIL Q+LLAR LGDFP + +G ++P+ GRKI+NIVM Sbjct: 145 TLTCSFCHTGTQKLVRNLTAEEILSQLLLARDRLGDFPERDTPQGAIVPAEGRKITNIVM 204 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NF+NVK +L IASD GLS SKRRITLSTSG VP I R GEEIGVMLAISLH Sbjct: 205 MGMGEPLYNFENVKTALLIASDGDGLSLSKRRITLSTSGIVPEIYRTGEEIGVMLAISLH 264 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV +DLR++LVPIN+KYPL+ L++ACR YPGLSNARRITFEYVMLK +NDS DA L+K Sbjct: 265 AVRDDLRDMLVPINKKYPLKQLMEACRAYPGLSNARRITFEYVMLKDVNDSLEDAKELVK 324 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGIPAKINLIPFNPWPG Y CSD + I F++ I ++GY+SPIRTPRG DILAACGQ Sbjct: 325 LLKGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINQAGYASPIRTPRGRDILAACGQ 384 Query: 365 LKSLSKRIPKVPRQEMQ 381 LKS S+R+ KV R + Sbjct: 385 LKSESERMRKVDRLAFE 401 >gi|256112582|ref|ZP_05453503.1| radical SAM protein [Brucella melitensis bv. 3 str. Ether] gi|265994024|ref|ZP_06106581.1| ribosomal RNA large subunit methyltransferase N [Brucella melitensis bv. 3 str. Ether] gi|262765005|gb|EEZ10926.1| ribosomal RNA large subunit methyltransferase N [Brucella melitensis bv. 3 str. Ether] Length = 411 Score = 518 bits (1334), Expect = e-145, Method: Composition-based stats. Identities = 257/382 (67%), Positives = 307/382 (80%), Gaps = 3/382 (0%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIGM REE+ AL+ G+P+R V+MR SQ+W W+YVRG+ DF M +IS+++R +L Sbjct: 27 KPSLIGMSREEMAAALIAAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 QHF+I PE+V+E+IS DGTRKWL RFP R G PVEIE+VYIPE+ RGTLC+SSQVGC+ Sbjct: 87 QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCISSQVGCT 146 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLT+EEIL Q+L AR LGDFP + +G ++P+ GRKI+NIVMM Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V ++LR+ILVPIN+KYPL LI ACR YPGLSNA+RITFEYVMLK INDS DA L+K+ Sbjct: 267 VRDELRDILVPINKKYPLAELIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKL 326 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+GIPAKINLIPFNPWPG Y CSD + I F++ + +GY+SPIRTPRG DILAACGQL Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386 Query: 366 KSLSKRIPKVPR---QEMQITG 384 KS S+R+ K R + M I G Sbjct: 387 KSESERLRKSERLALEAMMIAG 408 >gi|205829733|sp|Q7CWI1|RLMN_AGRT5 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase Length = 409 Score = 518 bits (1334), Expect = e-145, Method: Composition-based stats. Identities = 252/376 (67%), Positives = 306/376 (81%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIG+ REE+ EAL +IG+PQ+ V+MR SQ+W W+YVRG+ DF M+++++E+R L Sbjct: 23 KPSLIGLTREEMGEALAEIGVPQKQVKMRVSQLWNWLYVRGVSDFDNMTNVAKELREKLK 82 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F+I PEIV+E+IS DGTRKWL+RFP R G PVEIETVYIPE+ RGTLC+SSQVGCS Sbjct: 83 AAFTIARPEIVEEQISNDGTRKWLMRFPPRGAGRPVEIETVYIPEEGRGTLCISSQVGCS 142 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR LGDFP G +PS GRK+SNIVMM Sbjct: 143 LTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDGSTPVGAYVPSEGRKVSNIVMM 202 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF++VK +L IA+D GLS SKRR+TLSTSG VP I R G+EIGVMLAISLHA Sbjct: 203 GMGEPLYNFEHVKTALLIATDGDGLSLSKRRVTLSTSGVVPEIFRTGDEIGVMLAISLHA 262 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V +DLR++LVPIN+KYPL+ LI+ACR+YPG+SNARRITFEYVMLK +NDS DA L+++ Sbjct: 263 VRDDLRDMLVPINKKYPLKELIEACRNYPGVSNARRITFEYVMLKDVNDSLEDAKMLVQL 322 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG+PAKINLIPFNPWPG Y CS+ I F++ I ++GY+SPIRTPRG DILAACGQL Sbjct: 323 LKGVPAKINLIPFNPWPGTNYQCSEWAQIEKFADFINQAGYASPIRTPRGRDILAACGQL 382 Query: 366 KSLSKRIPKVPRQEMQ 381 KS S+R+ K R + Sbjct: 383 KSESERMRKTERLAFE 398 >gi|225851618|ref|YP_002731851.1| radical SAM protein [Brucella melitensis ATCC 23457] gi|256264871|ref|ZP_05467403.1| ribosomal RNA large subunit methyltransferase N [Brucella melitensis bv. 2 str. 63/9] gi|254807158|sp|C0RGD9|RLMN_BRUMB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|225639983|gb|ACN99896.1| radical SAM enzyme, Cfr family protein [Brucella melitensis ATCC 23457] gi|263095326|gb|EEZ18953.1| ribosomal RNA large subunit methyltransferase N [Brucella melitensis bv. 2 str. 63/9] gi|326408090|gb|ADZ65155.1| radical SAM protein [Brucella melitensis M28] gi|326537806|gb|ADZ86021.1| radical SAM enzyme, Cfr family protein [Brucella melitensis M5-90] Length = 411 Score = 518 bits (1334), Expect = e-145, Method: Composition-based stats. Identities = 257/382 (67%), Positives = 307/382 (80%), Gaps = 3/382 (0%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIGM REE+ AL+ G+P+R V+MR SQ+W W+YVRG+ DF M +IS+++R +L Sbjct: 27 KPSLIGMSREEMAAALIAAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 QHF+I PE+V+E+IS DGTRKWL RFP R G PVEIE+VYIPE+ RGTLC+SSQVGC+ Sbjct: 87 QHFTIARPEVVEEQISQDGTRKWLFRFPPRSAGRPVEIESVYIPEEGRGTLCISSQVGCT 146 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLT+EEIL Q+L AR LGDFP + +G ++P+ GRKI+NIVMM Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V ++LR+ILVPIN+KYPL LI ACR YPGLSNA+RITFEYVMLK INDS DA L+K+ Sbjct: 267 VRDELRDILVPINKKYPLAELIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKL 326 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+GIPAKINLIPFNPWPG Y CSD + I F++ + +GY+SPIRTPRG DILAACGQL Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386 Query: 366 KSLSKRIPKVPR---QEMQITG 384 KS S+R+ K R + M I G Sbjct: 387 KSESERLRKSERLALEAMMIAG 408 >gi|17988150|ref|NP_540784.1| florfenicol resistance protein [Brucella melitensis bv. 1 str. 16M] gi|148559330|ref|YP_001258119.1| hypothetical protein BOV_0076 [Brucella ovis ATCC 25840] gi|161618064|ref|YP_001591951.1| radical SAM protein [Brucella canis ATCC 23365] gi|163842351|ref|YP_001626755.1| radical SAM protein [Brucella suis ATCC 23445] gi|225626623|ref|ZP_03784662.1| radical SAM enzyme, Cfr family protein [Brucella ceti str. Cudo] gi|254694877|ref|ZP_05156705.1| radical SAM protein [Brucella abortus bv. 3 str. Tulya] gi|254700891|ref|ZP_05162719.1| radical SAM protein [Brucella suis bv. 5 str. 513] gi|254705255|ref|ZP_05167083.1| radical SAM protein [Brucella suis bv. 3 str. 686] gi|254707222|ref|ZP_05169050.1| radical SAM protein [Brucella pinnipedialis M163/99/10] gi|254709233|ref|ZP_05171044.1| radical SAM protein [Brucella pinnipedialis B2/94] gi|254713344|ref|ZP_05175155.1| radical SAM protein [Brucella ceti M644/93/1] gi|254716302|ref|ZP_05178113.1| radical SAM protein [Brucella ceti M13/05/1] gi|254718297|ref|ZP_05180108.1| radical SAM protein [Brucella sp. 83/13] gi|256030756|ref|ZP_05444370.1| radical SAM protein [Brucella pinnipedialis M292/94/1] gi|256045869|ref|ZP_05448743.1| radical SAM protein [Brucella melitensis bv. 1 str. Rev.1] gi|256158774|ref|ZP_05456640.1| radical SAM protein [Brucella ceti M490/95/1] gi|256254161|ref|ZP_05459697.1| radical SAM protein [Brucella ceti B1/94] gi|256368543|ref|YP_003106049.1| radical SAM protein [Brucella microti CCM 4915] gi|260169660|ref|ZP_05756471.1| radical SAM protein [Brucella sp. F5/99] gi|260563156|ref|ZP_05833642.1| ribosomal RNA large subunit methyltransferase N [Brucella melitensis bv. 1 str. 16M] gi|260567277|ref|ZP_05837747.1| ribosomal RNA large subunit methyltransferase N [Brucella suis bv. 4 str. 40] gi|261215209|ref|ZP_05929490.1| radical SAM protein [Brucella abortus bv. 3 str. Tulya] gi|261218081|ref|ZP_05932362.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti M13/05/1] gi|261221308|ref|ZP_05935589.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti B1/94] gi|261314704|ref|ZP_05953901.1| ribosomal RNA large subunit methyltransferase N [Brucella pinnipedialis M163/99/10] gi|261316737|ref|ZP_05955934.1| ribosomal RNA large subunit methyltransferase N [Brucella pinnipedialis B2/94] gi|261321072|ref|ZP_05960269.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti M644/93/1] gi|261751404|ref|ZP_05995113.1| ribosomal RNA large subunit methyltransferase N [Brucella suis bv. 5 str. 513] gi|261755967|ref|ZP_05999676.1| ribosomal RNA large subunit methyltransferase N [Brucella suis bv. 3 str. 686] gi|261759193|ref|ZP_06002902.1| ribosomal RNA large subunit methyltransferase N [Brucella sp. F5/99] gi|265983258|ref|ZP_06095993.1| ribosomal RNA large subunit methyltransferase N [Brucella sp. 83/13] gi|265987808|ref|ZP_06100365.1| ribosomal RNA large subunit methyltransferase N [Brucella pinnipedialis M292/94/1] gi|265992284|ref|ZP_06104841.1| ribosomal RNA large subunit methyltransferase N [Brucella melitensis bv. 1 str. Rev.1] gi|265997270|ref|ZP_06109827.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti M490/95/1] gi|306838909|ref|ZP_07471737.1| radical SAM enzyme, Cfr family [Brucella sp. NF 2653] gi|81851121|sp|Q8YEL1|RLMN_BRUME RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829674|sp|A9M6S9|RLMN_BRUC2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829675|sp|A5VN22|RLMN_BRUO2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829676|sp|B0CII9|RLMN_BRUSI RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|17983908|gb|AAL53048.1| florfenicol resistance protein [Brucella melitensis bv. 1 str. 16M] gi|148370587|gb|ABQ60566.1| conserved hypothetical protein TIGR00048 [Brucella ovis ATCC 25840] gi|161334875|gb|ABX61180.1| radical SAM enzyme, Cfr family [Brucella canis ATCC 23365] gi|163673074|gb|ABY37185.1| radical SAM enzyme, Cfr family [Brucella suis ATCC 23445] gi|225618280|gb|EEH15323.1| radical SAM enzyme, Cfr family protein [Brucella ceti str. Cudo] gi|255998701|gb|ACU47100.1| radical SAM protein [Brucella microti CCM 4915] gi|260153172|gb|EEW88264.1| ribosomal RNA large subunit methyltransferase N [Brucella melitensis bv. 1 str. 16M] gi|260156795|gb|EEW91875.1| ribosomal RNA large subunit methyltransferase N [Brucella suis bv. 4 str. 40] gi|260916816|gb|EEX83677.1| radical SAM protein [Brucella abortus bv. 3 str. Tulya] gi|260919892|gb|EEX86545.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti B1/94] gi|260923170|gb|EEX89738.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti M13/05/1] gi|261293762|gb|EEX97258.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti M644/93/1] gi|261295960|gb|EEX99456.1| ribosomal RNA large subunit methyltransferase N [Brucella pinnipedialis B2/94] gi|261303730|gb|EEY07227.1| ribosomal RNA large subunit methyltransferase N [Brucella pinnipedialis M163/99/10] gi|261739177|gb|EEY27173.1| ribosomal RNA large subunit methyltransferase N [Brucella sp. F5/99] gi|261741157|gb|EEY29083.1| ribosomal RNA large subunit methyltransferase N [Brucella suis bv. 5 str. 513] gi|261745720|gb|EEY33646.1| ribosomal RNA large subunit methyltransferase N [Brucella suis bv. 3 str. 686] gi|262551738|gb|EEZ07728.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti M490/95/1] gi|263003350|gb|EEZ15643.1| ribosomal RNA large subunit methyltransferase N [Brucella melitensis bv. 1 str. Rev.1] gi|264660005|gb|EEZ30266.1| ribosomal RNA large subunit methyltransferase N [Brucella pinnipedialis M292/94/1] gi|264661850|gb|EEZ32111.1| ribosomal RNA large subunit methyltransferase N [Brucella sp. 83/13] gi|306406025|gb|EFM62276.1| radical SAM enzyme, Cfr family [Brucella sp. NF 2653] Length = 411 Score = 518 bits (1334), Expect = e-145, Method: Composition-based stats. Identities = 257/382 (67%), Positives = 307/382 (80%), Gaps = 3/382 (0%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIGM REE+ AL+ G+P+R V+MR SQ+W W+YVRG+ DF M +IS+++R +L Sbjct: 27 KPSLIGMSREEMAAALIAAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 QHF+I PE+V+E+IS DGTRKWL RFP R G PVEIE+VYIPE+ RGTLC+SSQVGC+ Sbjct: 87 QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCISSQVGCT 146 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLT+EEIL Q+L AR LGDFP + +G ++P+ GRKI+NIVMM Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V ++LR+ILVPIN+KYPL LI ACR YPGLSNA+RITFEYVMLK INDS DA L+K+ Sbjct: 267 VRDELRDILVPINKKYPLAELIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKL 326 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+GIPAKINLIPFNPWPG Y CSD + I F++ + +GY+SPIRTPRG DILAACGQL Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386 Query: 366 KSLSKRIPKVPR---QEMQITG 384 KS S+R+ K R + M I G Sbjct: 387 KSESERLRKSERLALEAMMIAG 408 >gi|319780692|ref|YP_004140168.1| radical SAM enzyme, Cfr family [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166580|gb|ADV10118.1| radical SAM enzyme, Cfr family [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 411 Score = 517 bits (1333), Expect = e-145, Method: Composition-based stats. Identities = 259/384 (67%), Positives = 309/384 (80%), Gaps = 4/384 (1%) Query: 5 KKESLIGMMREELEEALLKIG-IPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +K+SLIG+ R EL E L+ G +P+R +MR Q+W W+YVRG+ DF GM +IS+++R Sbjct: 24 EKQSLIGLTRIELAETLVASGAVPERQAKMRAQQLWHWMYVRGVSDFAGMFNISKDLRAE 83 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L++HF++ PEIV+E+IS DGTRKWL RFP R G PVEIETVYIPE+ RGTLC+SSQVG Sbjct: 84 LDKHFTVARPEIVEEQISADGTRKWLFRFPPRGAGRPVEIETVYIPEEGRGTLCISSQVG 143 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+LTCSFC+TGTQKLVRNLTAEEIL Q+L AR LGDFP + +G ++P+ GRK+SNIV Sbjct: 144 CTLTCSFCHTGTQKLVRNLTAEEILAQLLTARDRLGDFPDRDTPDGAIVPAEGRKVSNIV 203 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R GEEIGVMLAISL Sbjct: 204 MMGMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVVPEIFRTGEEIGVMLAISL 263 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA ++DLR++LVPIN+KYPL+ LI ACR YPGLSNA+RITFEYVMLK +NDS DA LI Sbjct: 264 HATNDDLRDLLVPINKKYPLKELIAACRAYPGLSNAKRITFEYVMLKDVNDSIEDAKGLI 323 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+LKGIPAKINLIPFNPWPG Y CSD + I F++ I +GY+SPIRTPRG DILAACG Sbjct: 324 KLLKGIPAKINLIPFNPWPGTNYQCSDWETIEKFADYINNAGYASPIRTPRGRDILAACG 383 Query: 364 QLKSLSKRIPKVPR---QEMQITG 384 QLKS S+R+ KV R + M I G Sbjct: 384 QLKSDSERMRKVDRLALEAMMIAG 407 >gi|306846345|ref|ZP_07478896.1| radical SAM enzyme, Cfr family [Brucella sp. BO1] gi|306273188|gb|EFM55079.1| radical SAM enzyme, Cfr family [Brucella sp. BO1] Length = 411 Score = 517 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 258/382 (67%), Positives = 308/382 (80%), Gaps = 3/382 (0%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIGM REE+ AL+ G+P+R V+MR SQ+W W+YVRG+ DF M +IS+++R +L Sbjct: 27 KPSLIGMSREEMAAALIAAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 QHF+I PE+V+E+IS DGTRKWL RFP R G PVEIE+VYIPE+ RGTLC+SSQVGC+ Sbjct: 87 QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCISSQVGCT 146 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLT+EEIL Q+L AR LGDFP + +G ++P+ GRKI+NIVMM Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V ++LR+ILVPIN+KYPLE LI ACR YPGLSNA+RITFEYVMLK INDS DA L+K+ Sbjct: 267 VRDELRDILVPINKKYPLEQLIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKL 326 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+GIPAKINLIPFNPWPG Y CSD + I F++ + +GY+SPIRTPRG DILAACGQL Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386 Query: 366 KSLSKRIPKVPR---QEMQITG 384 KS S+R+ K R + M I G Sbjct: 387 KSESERLRKSERLALEAMMIAG 408 >gi|159185320|ref|NP_355610.2| hypothetical protein Atu2673 [Agrobacterium tumefaciens str. C58] gi|159140577|gb|AAK88395.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 390 Score = 517 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 252/376 (67%), Positives = 306/376 (81%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIG+ REE+ EAL +IG+PQ+ V+MR SQ+W W+YVRG+ DF M+++++E+R L Sbjct: 4 KPSLIGLTREEMGEALAEIGVPQKQVKMRVSQLWNWLYVRGVSDFDNMTNVAKELREKLK 63 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F+I PEIV+E+IS DGTRKWL+RFP R G PVEIETVYIPE+ RGTLC+SSQVGCS Sbjct: 64 AAFTIARPEIVEEQISNDGTRKWLMRFPPRGAGRPVEIETVYIPEEGRGTLCISSQVGCS 123 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR LGDFP G +PS GRK+SNIVMM Sbjct: 124 LTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDGSTPVGAYVPSEGRKVSNIVMM 183 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF++VK +L IA+D GLS SKRR+TLSTSG VP I R G+EIGVMLAISLHA Sbjct: 184 GMGEPLYNFEHVKTALLIATDGDGLSLSKRRVTLSTSGVVPEIFRTGDEIGVMLAISLHA 243 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V +DLR++LVPIN+KYPL+ LI+ACR+YPG+SNARRITFEYVMLK +NDS DA L+++ Sbjct: 244 VRDDLRDMLVPINKKYPLKELIEACRNYPGVSNARRITFEYVMLKDVNDSLEDAKMLVQL 303 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG+PAKINLIPFNPWPG Y CS+ I F++ I ++GY+SPIRTPRG DILAACGQL Sbjct: 304 LKGVPAKINLIPFNPWPGTNYQCSEWAQIEKFADFINQAGYASPIRTPRGRDILAACGQL 363 Query: 366 KSLSKRIPKVPRQEMQ 381 KS S+R+ K R + Sbjct: 364 KSESERMRKTERLAFE 379 >gi|307942545|ref|ZP_07657893.1| radical SAM enzyme, Cfr family [Roseibium sp. TrichSKD4] gi|307774184|gb|EFO33397.1| radical SAM enzyme, Cfr family [Roseibium sp. TrichSKD4] Length = 406 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 250/376 (66%), Positives = 308/376 (81%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+G+ RE+L EAL IGIP + RMR +Q+W W+YVRG+ DF M++I++++R L Sbjct: 30 EKPNLVGLDREQLAEALGGIGIPVKQQRMRVAQLWHWLYVRGVSDFGAMTNIAKDLRAQL 89 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 ++FSI PEIV E+IS DGTRKWL RFP R G PVE+ETVYIPE+ RGTLCVSSQVGC Sbjct: 90 EENFSIARPEIVSEQISVDGTRKWLFRFPPRGAGRPVEVETVYIPEEGRGTLCVSSQVGC 149 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +LTC+FC+TGTQKLVRNLT+EEIL Q+L+AR LLGDFP + +G ++PS GR +SNIVM Sbjct: 150 TLTCTFCHTGTQKLVRNLTSEEILAQILMARDLLGDFPEAKTPQGAIVPSEGRLVSNIVM 209 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NF+NVK++L IASD GLS SKRRITLSTSG VP IAR G+EIG MLAISLH Sbjct: 210 MGMGEPLYNFENVKRALLIASDGDGLSLSKRRITLSTSGVVPEIARTGDEIGCMLAISLH 269 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV +DLR++LVPIN+K+ LE L+D CR YPGLSNA+RITFEYVMLKG+NDS DA L++ Sbjct: 270 AVRDDLRDVLVPINKKWSLEKLLDTCRAYPGLSNAKRITFEYVMLKGVNDSNADAKQLVQ 329 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGIPAKINLIPFNPWPG +Y CSD + I F++ + R+GY+SPIRTPRG DI AACGQ Sbjct: 330 LLKGIPAKINLIPFNPWPGSDYECSDWERIEEFADIVNRAGYASPIRTPRGRDIFAACGQ 389 Query: 365 LKSLSKRIPKVPRQEM 380 LKS S+R+ K R+ + Sbjct: 390 LKSASERMRKKDREAL 405 >gi|205829900|sp|Q2K3B1|RLMN_RHIEC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase Length = 409 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 256/377 (67%), Positives = 310/377 (82%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K SLIG+ REE+ AL + G+P++ ++MR SQ+W WIYVRG+ DF M+++++++R +L Sbjct: 22 EKPSLIGLSREEMAAALREKGVPEKQIKMRVSQLWNWIYVRGVSDFDHMTNVAKDMREML 81 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 QHF+I PEIV+E++S DGTRKWLLRFPAR G PVEIE VYIPE+ RGTLC+SSQVGC Sbjct: 82 KQHFTIARPEIVEEQVSNDGTRKWLLRFPARGAGRPVEIEAVYIPEEGRGTLCISSQVGC 141 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR LGDFP E +G ++P+ GRK+SNIVM Sbjct: 142 TLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNIVM 201 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFD VK++L IA+D GLS SKRR+TLSTSG VP I R GEEIGVMLAISLH Sbjct: 202 MGMGEPLYNFDAVKQALLIATDGDGLSLSKRRVTLSTSGVVPEIFRTGEEIGVMLAISLH 261 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV +DLR+ILVPIN+KYPL+ LIDAC+ YPGLSNARRITFEYVMLK +NDS DA LIK Sbjct: 262 AVRDDLRDILVPINKKYPLKELIDACKAYPGLSNARRITFEYVMLKDVNDSLEDAKGLIK 321 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKG+PAKINLIPFNPWPG Y CSD + I F++ I +GY+SPIRTPRG DILAACGQ Sbjct: 322 LLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAACGQ 381 Query: 365 LKSLSKRIPKVPRQEMQ 381 LKS S+R+ K R + Sbjct: 382 LKSESERMRKTERLAFE 398 >gi|306842623|ref|ZP_07475272.1| radical SAM enzyme, Cfr family [Brucella sp. BO2] gi|306287268|gb|EFM58756.1| radical SAM enzyme, Cfr family [Brucella sp. BO2] Length = 411 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 257/382 (67%), Positives = 307/382 (80%), Gaps = 3/382 (0%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIGM REE+ L+ G+P+R V+MR SQ+W W+YVRG+ DF M +IS+++R +L Sbjct: 27 KPSLIGMSREEMAATLIAAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 QHF+I PE+V+E+IS DGTRKWL RFP R G PVEIE+VYIPE+ RGTLC+SSQVGC+ Sbjct: 87 QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCISSQVGCT 146 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLT+EEIL Q+L AR LGDFP + +G ++P+ GRKI+NIVMM Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V ++LR+ILVPIN+KYPLE LI ACR YPGLSNA+RITFEYVMLK INDS DA L+K+ Sbjct: 267 VRDELRDILVPINKKYPLEQLIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKL 326 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+GIPAKINLIPFNPWPG Y CSD + I F++ + +GY+SPIRTPRG DILAACGQL Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386 Query: 366 KSLSKRIPKVPR---QEMQITG 384 KS S+R+ K R + M I G Sbjct: 387 KSESERLRKSERLALEAMMIAG 408 >gi|254504202|ref|ZP_05116353.1| radical SAM enzyme, Cfr family [Labrenzia alexandrii DFL-11] gi|222440273|gb|EEE46952.1| radical SAM enzyme, Cfr family [Labrenzia alexandrii DFL-11] Length = 421 Score = 515 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 248/376 (65%), Positives = 306/376 (81%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K +LIG+ REEL EAL IG+PQ+ RMR+SQ+W W+YVRG+ DF MS+I++++R L Sbjct: 38 DKPTLIGLSREELGEALGTIGVPQKQWRMRSSQLWHWLYVRGVSDFAEMSNIAKDLRSKL 97 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 ++ F+I P+IV E+IS DGTRKWL +FP R G PVE+ETVYIPE+ RGTLCVSSQVGC Sbjct: 98 DEAFTIARPKIVSEQISVDGTRKWLFQFPPRGAGNPVEVETVYIPEEGRGTLCVSSQVGC 157 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +LTC+FC+TGTQKLVRNLT+EEIL Q+L+AR LGDFP +G ++PS GR ++NIVM Sbjct: 158 TLTCTFCHTGTQKLVRNLTSEEILSQILIARDRLGDFPDAHTPQGAIVPSEGRLVTNIVM 217 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NF+NVKK+L IASD GLS SKRRITLSTSG VP I R G+EIG MLAISLH Sbjct: 218 MGMGEPLYNFENVKKALLIASDGDGLSLSKRRITLSTSGVVPEIFRTGDEIGCMLAISLH 277 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV ++ R+ILVPIN+K+ ++ L+DACR+YPGLSNA+RITFEYVMLK INDS DAL L++ Sbjct: 278 AVRDEDRDILVPINKKWNIKELLDACRNYPGLSNAKRITFEYVMLKDINDSNEDALELVR 337 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGIPAKINLIPFNPWPG +Y CSD + I F++ + R+GY+SPIRTPRG DI AACGQ Sbjct: 338 LLKGIPAKINLIPFNPWPGSQYACSDWERIEEFADIVNRAGYASPIRTPRGRDIFAACGQ 397 Query: 365 LKSLSKRIPKVPRQEM 380 LKS S+R+ K R + Sbjct: 398 LKSTSERMRKKDRDAL 413 >gi|222087496|ref|YP_002546033.1| hypothetical protein Arad_4378 [Agrobacterium radiobacter K84] gi|254807146|sp|B9JCI9|RLMN_AGRRK RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|221724944|gb|ACM28100.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 411 Score = 515 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 255/377 (67%), Positives = 307/377 (81%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K SLIG+ REE+ AL + G+ + V+MR SQ+W WIYVRG+ DF M+++S+++R +L Sbjct: 25 PKPSLIGLTREEMGAALKEKGVADKQVKMRVSQLWNWIYVRGVSDFDAMANVSKDMREML 84 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 HF+I PEIV+E++S DGTRKWLLRFP R G PVE+ETVYIPE+ RGTLCVSSQVGC Sbjct: 85 KAHFTIARPEIVEEQVSNDGTRKWLLRFPPRGAGRPVEVETVYIPEEGRGTLCVSSQVGC 144 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 SLTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR LGDFP E +G ++P+ GRK+SN+VM Sbjct: 145 SLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNMVM 204 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NF++VK +L IASD GLS SKRRITLSTSG VP I R G+EIGVMLAISLH Sbjct: 205 MGMGEPLYNFESVKTALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLH 264 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV +DLR++LVPIN+KYPL+ L+DACR YPGLSNARRITFEYVMLKG+NDS DA LI+ Sbjct: 265 AVRDDLRDMLVPINKKYPLKELMDACRAYPGLSNARRITFEYVMLKGVNDSLEDAKGLIQ 324 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGIP+KINLIPFNPWPG Y CSD + I F++ I +GY+SPIRTPRG DILAACGQ Sbjct: 325 LLKGIPSKINLIPFNPWPGTNYQCSDWEQIEKFADFINAAGYASPIRTPRGRDILAACGQ 384 Query: 365 LKSLSKRIPKVPRQEMQ 381 LKS S+R+ K R + Sbjct: 385 LKSDSERMRKTERLAFE 401 >gi|328541802|ref|YP_004301911.1| ribosomal RNA large subunit methyltransferase N [polymorphum gilvum SL003B-26A1] gi|326411554|gb|ADZ68617.1| Ribosomal RNA large subunit methyltransferase N [Polymorphum gilvum SL003B-26A1] Length = 414 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 249/380 (65%), Positives = 306/380 (80%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 + +LIG+ R+EL +A+ +IG+P++ RMR +Q+W W+YVRG+ DF M++I++++R L Sbjct: 35 DRPTLIGLTRDELADAMGEIGVPEKQRRMRAAQLWHWLYVRGVSDFALMTNIAKDLRQQL 94 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F+I PEIV E+IS DGTRKWL RFP R G PVEIETVYIPE+ RGTLCVSSQVGC Sbjct: 95 DARFTIARPEIVSEQISVDGTRKWLFRFPPRGAGRPVEIETVYIPEEGRGTLCVSSQVGC 154 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +LTC+FC+TGTQKLVRNLTAEEIL Q+L+AR LGDFP +G V+PS GR +SNIVM Sbjct: 155 TLTCTFCHTGTQKLVRNLTAEEILSQILMARDRLGDFPDAATPQGAVVPSEGRLVSNIVM 214 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NF+NVKK+L IASD GLS SKRRITLSTSG VP IAR G EIG MLAISLH Sbjct: 215 MGMGEPLYNFENVKKALLIASDGDGLSLSKRRITLSTSGVVPEIARAGAEIGCMLAISLH 274 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV++DLR++LVPINRK+ + L+DACR YPGLSNA+RITFEYVMLKG+NDS DA L++ Sbjct: 275 AVNDDLRDVLVPINRKWRIRDLLDACRAYPGLSNAKRITFEYVMLKGVNDSDADARELVR 334 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGIPAKINLIPFNPWPG +Y CSD + I F++ + R+GY+SPIRTPRG DI AACGQ Sbjct: 335 LLKGIPAKINLIPFNPWPGSDYECSDWERIEQFADIVNRAGYASPIRTPRGRDIFAACGQ 394 Query: 365 LKSLSKRIPKVPRQEMQITG 384 LKS S+R+ K R+ + Sbjct: 395 LKSASERMRKKDREAVAAGA 414 >gi|23500991|ref|NP_697118.1| hypothetical protein BR0077 [Brucella suis 1330] gi|81753358|sp|Q8G374|RLMN_BRUSU RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|23346851|gb|AAN29033.1| conserved hypothetical protein TIGR00048 [Brucella suis 1330] Length = 411 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 256/382 (67%), Positives = 306/382 (80%), Gaps = 3/382 (0%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIGM REE+ AL+ G+P+R V+MR SQ+W W+YVRG+ DF M +IS+++R +L Sbjct: 27 KPSLIGMSREEMAAALIAAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 QHF+I PE+V+E+IS DGTRKWL RFP R G PVEIE+VYIPE+ RGTLC+SSQVGC+ Sbjct: 87 QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCISSQVGCT 146 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLT+EEIL Q+L AR LGDFP + +G ++P+ GRKI+NIVMM Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+ VKK+L IASD G S SKRRITLSTSG VP I R G+EIGVMLAISLHA Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGPSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V ++LR+ILVPIN+KYPL LI ACR YPGLSNA+RITFEYVMLK INDS DA L+K+ Sbjct: 267 VRDELRDILVPINKKYPLAELIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKL 326 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+GIPAKINLIPFNPWPG Y CSD + I F++ + +GY+SPIRTPRG DILAACGQL Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386 Query: 366 KSLSKRIPKVPR---QEMQITG 384 KS S+R+ K R + M I G Sbjct: 387 KSESERLRKSERLALEAMMIAG 408 >gi|327190218|gb|EGE57323.1| hypothetical protein RHECNPAF_44600102 [Rhizobium etli CNPAF512] Length = 411 Score = 514 bits (1325), Expect = e-144, Method: Composition-based stats. Identities = 254/377 (67%), Positives = 309/377 (81%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K SLIG+ REE+ AL + G+ ++ ++MR +Q+W WIYVRG+ DF M+++++++R +L Sbjct: 24 EKPSLIGLSREEMAAALREKGVAEKQIKMRVAQLWNWIYVRGVSDFDHMTNVAKDMREML 83 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 QHF+I PEIV+E++S DGTRKWLLRFPAR G PVEIE VYIPE+ RGTLC+SSQVGC Sbjct: 84 KQHFTIARPEIVEEQVSNDGTRKWLLRFPARGAGRPVEIEAVYIPEEGRGTLCISSQVGC 143 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR LGDFP E +G ++P+ GRK+SNIVM Sbjct: 144 TLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNIVM 203 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFD VK++L IA+D GLS SKRR+TLSTSG VP I R GEEIGVMLAISLH Sbjct: 204 MGMGEPLYNFDAVKQALLIATDGDGLSLSKRRVTLSTSGVVPEIFRTGEEIGVMLAISLH 263 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV +DLR+ILVPIN+KYPL+ LIDAC+ YPGLSNARRITFEYVMLK +NDS DA LIK Sbjct: 264 AVRDDLRDILVPINKKYPLKELIDACKAYPGLSNARRITFEYVMLKDVNDSLEDAKGLIK 323 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKG+PAKINLIPFNPWPG Y CSD + I F++ I +GY+SPIRTPRG DILAACGQ Sbjct: 324 LLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAACGQ 383 Query: 365 LKSLSKRIPKVPRQEMQ 381 LKS S+R+ K R + Sbjct: 384 LKSESERMRKTERLAFE 400 >gi|209551296|ref|YP_002283213.1| radical SAM protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|254807197|sp|B5ZTF1|RLMN_RHILW RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|209537052|gb|ACI56987.1| radical SAM enzyme, Cfr family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 408 Score = 514 bits (1325), Expect = e-144, Method: Composition-based stats. Identities = 252/379 (66%), Positives = 309/379 (81%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 L+K SLIG+ REE+ AL + G+ ++ ++MR +Q+W WIYVRG+ DF M+++++++R Sbjct: 19 SLEKPSLIGLSREEMGAALRERGVAEKQIKMRVAQLWNWIYVRGVSDFDHMTNVAKDMRE 78 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 +L QHF+I PEIV+E++S DGTRKWLLRFP R G PVEIE VYIPE+ RGTLC+SSQV Sbjct: 79 MLKQHFTIARPEIVEEQVSNDGTRKWLLRFPPRGAGRPVEIEAVYIPEEGRGTLCISSQV 138 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR LGDFP E +G ++P+ GRK+SNI Sbjct: 139 GCTLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNI 198 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL NFD VK++L IA+D GLS S+RR+TLSTSG VP I R GEEIGVMLAIS Sbjct: 199 VMMGMGEPLYNFDAVKQALLIATDGDGLSLSRRRVTLSTSGVVPEIFRTGEEIGVMLAIS 258 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHAV +DLR+ILVPIN+KYPL+ LI+AC+ YPGLSNARRITFEYVMLK +NDS DA L Sbjct: 259 LHAVRDDLRDILVPINKKYPLKELIEACKAYPGLSNARRITFEYVMLKDVNDSLEDAKGL 318 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 IK+LKG+PAKINLIPFNPWPG Y CSD + I F++ I +GY+SPIRTPRG DILAAC Sbjct: 319 IKLLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAAC 378 Query: 363 GQLKSLSKRIPKVPRQEMQ 381 GQLKS S+R+ K R + Sbjct: 379 GQLKSESERMRKTERLAFE 397 >gi|116254249|ref|YP_770087.1| hypothetical protein RL4522 [Rhizobium leguminosarum bv. viciae 3841] gi|123384474|sp|Q1MAN2|RLMN_RHIL3 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|115258897|emb|CAK10006.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 408 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 254/379 (67%), Positives = 309/379 (81%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 L+K SLIGM REE+ AL + G+ ++ ++MR SQ+W WIYVRG+ DF M+++++++R Sbjct: 19 SLEKPSLIGMSREEMGAALREKGVAEKQIKMRVSQLWNWIYVRGVSDFDHMTNVAKDMRE 78 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 +L QHF+I PEIV+E++S DGTRKWLLRFP R G PVEIE VYIPE+ RGTLC+SSQV Sbjct: 79 MLKQHFTIARPEIVEEQVSNDGTRKWLLRFPPRGAGRPVEIEAVYIPEEGRGTLCISSQV 138 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR LGDFP E +G ++P+ GRK+SNI Sbjct: 139 GCTLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNI 198 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL NFD VK++L IA+D GLS S+RR+TLSTSG VP I R GEEIGVMLAIS Sbjct: 199 VMMGMGEPLYNFDAVKQALLIATDGDGLSLSRRRVTLSTSGVVPEIFRTGEEIGVMLAIS 258 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHAV +DLR++LVPIN+KYPL+ LI+ACR YPGLSNARRITFEYVMLK +NDS DA L Sbjct: 259 LHAVRDDLRDLLVPINKKYPLKELIEACRTYPGLSNARRITFEYVMLKDVNDSLEDAKGL 318 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 IK+LKG+PAKINLIPFNPWPG Y CSD + I F++ I +GY+SPIRTPRG DILAAC Sbjct: 319 IKLLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAAC 378 Query: 363 GQLKSLSKRIPKVPRQEMQ 381 GQLKS S+R+ K R + Sbjct: 379 GQLKSESERMRKTERLAFE 397 >gi|190893778|ref|YP_001980320.1| hypothetical protein RHECIAT_CH0004213 [Rhizobium etli CIAT 652] gi|254807196|sp|B3PQY8|RLMN_RHIE6 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|190699057|gb|ACE93142.1| hypothetical conserved protein [Rhizobium etli CIAT 652] Length = 409 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 253/377 (67%), Positives = 309/377 (81%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K SLIG+ R+E+ AL + G+ ++ ++MR +Q+W WIYVRG+ DF M+++++++R +L Sbjct: 22 EKPSLIGLSRQEMAAALREKGVAEKQIKMRVAQLWNWIYVRGVSDFDHMTNVAKDMREML 81 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 QHF+I PEIV+E++S DGTRKWLLRFPAR G PVEIE VYIPE+ RGTLC+SSQVGC Sbjct: 82 KQHFTIARPEIVEEQVSNDGTRKWLLRFPARGAGRPVEIEAVYIPEEGRGTLCISSQVGC 141 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR LGDFP E +G ++P+ GRK+SNIVM Sbjct: 142 TLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNIVM 201 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFD VK++L IA+D GLS SKRR+TLSTSG VP I R GEEIGVMLAISLH Sbjct: 202 MGMGEPLYNFDAVKQALLIATDGDGLSLSKRRVTLSTSGVVPEIFRTGEEIGVMLAISLH 261 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV +DLR+ILVPIN+KYPL+ LIDAC+ YPGLSNARRITFEYVMLK +NDS DA LIK Sbjct: 262 AVRDDLRDILVPINKKYPLKELIDACKAYPGLSNARRITFEYVMLKDVNDSLEDAKGLIK 321 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKG+PAKINLIPFNPWPG Y CSD + I F++ I +GY+SPIRTPRG DILAACGQ Sbjct: 322 LLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAACGQ 381 Query: 365 LKSLSKRIPKVPRQEMQ 381 LKS S+R+ K R + Sbjct: 382 LKSESERMRKTERLAFE 398 >gi|294851482|ref|ZP_06792155.1| cfr family radical SAM enzyme [Brucella sp. NVSL 07-0026] gi|294820071|gb|EFG37070.1| cfr family radical SAM enzyme [Brucella sp. NVSL 07-0026] Length = 411 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 256/382 (67%), Positives = 306/382 (80%), Gaps = 3/382 (0%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIGM REE+ A + G+P+R V+MR SQ+W W+YVRG+ DF M +IS+++R +L Sbjct: 27 KPSLIGMSREEMATARIAAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 QHF+I PE+V+E+IS DGTRKWL RFP R G PVEIE+VYIPE+ RGTLC+SSQVGC+ Sbjct: 87 QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCISSQVGCT 146 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLT+EEIL Q+L AR LGDFP + +G ++P+ GRKI+NIVMM Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V ++LR+ILVPIN+KYPL LI ACR YPGLSNA+RITFEYVMLK INDS DA L+K+ Sbjct: 267 VRDELRDILVPINKKYPLAELIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKL 326 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+GIPAKINLIPFNPWPG Y CSD + I F++ + +GY+SPIRTPRG DILAACGQL Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386 Query: 366 KSLSKRIPKVPR---QEMQITG 384 KS S+R+ K R + M I G Sbjct: 387 KSESERLRKSERLALEAMMIAG 408 >gi|241206731|ref|YP_002977827.1| radical SAM enzyme, Cfr family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860621|gb|ACS58288.1| radical SAM enzyme, Cfr family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 409 Score = 511 bits (1317), Expect = e-143, Method: Composition-based stats. Identities = 253/378 (66%), Positives = 310/378 (82%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K SLIG+ REE+ AL + G+ ++ ++MR SQ+W WIYVRG+ DF M+++++++R + Sbjct: 21 VEKPSLIGLSREEMGAALREKGVAEKQIKMRVSQLWNWIYVRGVSDFDHMTNVAKDMREM 80 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L QHF+I PEIV+E++S DGTRKWLLRFPAR G PVEIE VYIPE+ RGTLC+SSQVG Sbjct: 81 LKQHFTIERPEIVEEQVSNDGTRKWLLRFPARGAGRPVEIEAVYIPEEGRGTLCLSSQVG 140 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR LGDFP E +G ++P+ GRK+SNIV Sbjct: 141 CTLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNIV 200 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL NFD VK++L IA+D GLS S+RR+TLSTSG VP I R GEEIGVMLAISL Sbjct: 201 MMGMGEPLYNFDAVKQALLIATDGDGLSLSRRRVTLSTSGVVPEIFRTGEEIGVMLAISL 260 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HAV +DLR++LVPIN+KYPL+ LI+ACR YPGLSNARRITFEYVMLK +NDS DA LI Sbjct: 261 HAVRDDLRDLLVPINKKYPLKELIEACRTYPGLSNARRITFEYVMLKDVNDSLEDAKGLI 320 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+LKG+PAKINLIPFNPWPG Y CSD + I F++ I +GY+SPIRTPRG DILAACG Sbjct: 321 KLLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAACG 380 Query: 364 QLKSLSKRIPKVPRQEMQ 381 QLKS S+R+ K R + Sbjct: 381 QLKSESERMRKTDRLAFE 398 >gi|163757380|ref|ZP_02164469.1| radical SAM enzyme, Cfr family protein [Hoeflea phototrophica DFL-43] gi|162284882|gb|EDQ35164.1| radical SAM enzyme, Cfr family protein [Hoeflea phototrophica DFL-43] Length = 410 Score = 511 bits (1316), Expect = e-143, Method: Composition-based stats. Identities = 251/382 (65%), Positives = 305/382 (79%), Gaps = 3/382 (0%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K L+GM R+EL A+ + G+P+R +MR +Q+W W+YVRG DF M IS+++R L+ Sbjct: 25 KPVLVGMDRDELIAAMAEAGVPERQRKMRVNQLWHWLYVRGSSDFADMHTISKDLRDKLD 84 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 HFS+ PEIV+E+IS DGTRKWL+RFP R G PVE+ETVYIPE+ RGTLC+SSQVGC+ Sbjct: 85 AHFSVARPEIVEEQISSDGTRKWLMRFPPRGAGRPVEVETVYIPEEGRGTLCISSQVGCT 144 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTC+FC+TGTQKLVRNLT EEIL Q+L+AR LGDFP + +G ++P+ GRK++NIVMM Sbjct: 145 LTCTFCHTGTQKLVRNLTPEEILAQLLVARDRLGDFPHKDTPQGAIVPTEGRKVTNIVMM 204 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+NVKK+L IASD GL+ S+RRITLSTSG VP I R G EIGVMLAISLHA Sbjct: 205 GMGEPLYNFENVKKALLIASDGDGLALSRRRITLSTSGVVPEITRTGTEIGVMLAISLHA 264 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V ++LR+ LVPIN+KYPL+ L+DACR YPGLSNARRITFEYVMLKG+NDS DA L+++ Sbjct: 265 VRDELRDELVPINKKYPLKQLLDACRAYPGLSNARRITFEYVMLKGVNDSLSDAKELVRL 324 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKGIPAKINLIPFNPWPG Y CSD I TF++ I +GY+SPIRTPRG DILAACGQL Sbjct: 325 LKGIPAKINLIPFNPWPGSAYECSDWDTIETFADFINANGYASPIRTPRGRDILAACGQL 384 Query: 366 KSLSKRIPKVPR---QEMQITG 384 KS S+R+ K R + M I G Sbjct: 385 KSESERMRKTERLALEAMMIAG 406 >gi|254472235|ref|ZP_05085635.1| radical SAM enzyme, Cfr family [Pseudovibrio sp. JE062] gi|211958518|gb|EEA93718.1| radical SAM enzyme, Cfr family [Pseudovibrio sp. JE062] Length = 420 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 247/379 (65%), Positives = 305/379 (80%), Gaps = 2/379 (0%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K SLIG+ REEL AL +G+P+R +RMR +Q+W W+YVRGI DF MS++S+++R L Sbjct: 34 EKPSLIGLSREELGNALAAVGVPERQIRMRVNQLWHWLYVRGISDFSKMSNVSKDLRTKL 93 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F+I PEIV E+IS DGTRKWL RFP+R G PVE+ETVYIPE+ RGTLC+SSQVGC Sbjct: 94 DFAFTIARPEIVTEQISVDGTRKWLFRFPSRGAGKPVEVETVYIPEEDRGTLCISSQVGC 153 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG--RKISNI 182 +LTC+FC+TGTQK+VRNLTAEEIL Q++LA+ L DFP + EG + S R+I+NI Sbjct: 154 TLTCTFCHTGTQKMVRNLTAEEILAQLMLAKDRLNDFPDADAPEGGLDASTSNRRRITNI 213 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL NF+NVKK+L IASD GLS SKRRITLSTSG P IAR G+EIG MLAIS Sbjct: 214 VMMGMGEPLYNFENVKKALLIASDGDGLSLSKRRITLSTSGVTPEIARTGDEIGCMLAIS 273 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHAV+++LRN+LVPIN+KY LE L+ ACR YPGLSNA+RITFEYVMLKG+NDS DA L Sbjct: 274 LHAVNDELRNVLVPINKKYNLETLLQACRDYPGLSNAKRITFEYVMLKGVNDSLEDAKKL 333 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +++LKGIPAKINL+PFNPWPG Y CSD + I F++ + R+GY+SPIRTPRG DI AAC Sbjct: 334 VQLLKGIPAKINLLPFNPWPGSPYECSDWEQIEEFADVVNRAGYASPIRTPRGRDIFAAC 393 Query: 363 GQLKSLSKRIPKVPRQEMQ 381 GQLKS S+R+ K R+ ++ Sbjct: 394 GQLKSASERLRKSEREALE 412 >gi|163867325|ref|YP_001608519.1| hypothetical protein Btr_0020 [Bartonella tribocorum CIP 105476] gi|205829668|sp|A9IL44|RLMN_BART1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|161016966|emb|CAK00524.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476] Length = 408 Score = 508 bits (1308), Expect = e-142, Method: Composition-based stats. Identities = 250/376 (66%), Positives = 304/376 (80%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIG+ ++E+ +AL +G+P+R RMR Q+W W+YVRG+ +F M +IS+ ++ L Sbjct: 28 KLSLIGLSQDEIVQALKTVGVPERQTRMRARQLWHWLYVRGVSNFDEMLNISKVMQETLK 87 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 HFSI PEIV E+IS DGTRKWLLRFPAR G PVEIETVYIPE+ RGTLC+SSQVGC+ Sbjct: 88 HHFSIARPEIVGEQISKDGTRKWLLRFPARGAGRPVEIETVYIPEEGRGTLCLSSQVGCT 147 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQ LVRNLTAEEIL Q+L+AR LGDFP +G ++P GRK++NIVMM Sbjct: 148 LTCSFCHTGTQMLVRNLTAEEILAQLLVARDCLGDFPDKNTPDGAIVPVEGRKVTNIVMM 207 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N++ VKK+L IASD GLS SKRRITLSTSG VP I R GEEIGVMLAISLHA Sbjct: 208 GMGEPLYNYEAVKKALLIASDGDGLSLSKRRITLSTSGVVPGIIRTGEEIGVMLAISLHA 267 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V + +R++LVPIN+KYPL +L+DACR+YPGLSNA+RITFEYVMLK INDS DA LI++ Sbjct: 268 VHDTVRDMLVPINKKYPLTLLMDACRNYPGLSNAKRITFEYVMLKDINDSLDDAKRLIQL 327 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKGIPAKINLIPFNPWPG Y CSD + I F++ + ++GY+SPIRTPRG DILAACGQL Sbjct: 328 LKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADVVNQAGYASPIRTPRGRDILAACGQL 387 Query: 366 KSLSKRIPKVPRQEMQ 381 KS S+R+ K R +++ Sbjct: 388 KSASERLRKSERLKLE 403 >gi|304392673|ref|ZP_07374613.1| radical SAM enzyme, Cfr family [Ahrensia sp. R2A130] gi|303295303|gb|EFL89663.1| radical SAM enzyme, Cfr family [Ahrensia sp. R2A130] Length = 423 Score = 507 bits (1307), Expect = e-142, Method: Composition-based stats. Identities = 238/387 (61%), Positives = 300/387 (77%), Gaps = 7/387 (1%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K SLIGM R ++ AL++ GIPQ+ RMR SQ+W+WIY G DF M++I++++R L Sbjct: 26 EKPSLIGMDRADMAAALIEAGIPQKQARMRASQLWQWIYWYGHTDFAAMTNIAKDLRAKL 85 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +F++ PE+V+E IS DGTRKWL RFPAR G PVE+ETVYIPE RGTLC+SSQVGC Sbjct: 86 ADNFTLERPELVEELISTDGTRKWLFRFPARGAGAPVEVETVYIPESDRGTLCISSQVGC 145 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP-------GCEDIEGMVIPSVGR 177 +LTC+FC+TGTQKLVRNLTAEEIL+Q+++AR LGDFP ++ E IP R Sbjct: 146 TLTCTFCHTGTQKLVRNLTAEEILMQLMVARDRLGDFPDKPPVKAAAKNEEEAFIPDGDR 205 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 K+SNIVMMGMGEPL NF++VKK+L IASD+ GLS SKRRITLSTSG VP I R G+EIG Sbjct: 206 KVSNIVMMGMGEPLYNFEHVKKALLIASDNEGLSLSKRRITLSTSGVVPGIERTGDEIGC 265 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 LAISLHA +++LR++LVPIN+KYP+ L+DACR+YPG SN++RITFEYVML G+NDS Sbjct: 266 GLAISLHATNDELRDVLVPINKKYPIAKLLDACRNYPGASNSKRITFEYVMLDGVNDSLA 325 Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 DA L+++LKGIPAKINLIPFNPWPG +Y CS + I F+E + +GY+SP+RTPRG D Sbjct: 326 DAKELVRLLKGIPAKINLIPFNPWPGSQYECSSWEKIEAFAEFVNANGYASPVRTPRGRD 385 Query: 358 ILAACGQLKSLSKRIPKVPRQEMQITG 384 I AACGQLKS S+R+ K R+ + Sbjct: 386 IFAACGQLKSESERMRKKDRETAEFAA 412 >gi|222150075|ref|YP_002551032.1| Fe-S-cluster redox protein [Agrobacterium vitis S4] gi|254807147|sp|B9JU97|RLMN_AGRVS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|221737057|gb|ACM38020.1| Fe-S-cluster redox protein [Agrobacterium vitis S4] Length = 410 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 252/387 (65%), Positives = 308/387 (79%), Gaps = 3/387 (0%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M K +LIG REE+ E L +IG+ + VRMR +Q+W WIYVRG+ DF M+++++++ Sbjct: 19 MTGATKPTLIGQTREEMGEMLREIGVADKQVRMRVAQLWNWIYVRGVSDFDQMTNVAKDM 78 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L HF+I PEIV+E++S DGTRKWLLR+P R G PVE+E VYIPE+ RGTLCVSS Sbjct: 79 REKLKAHFTIARPEIVEEQVSNDGTRKWLLRYPPRGAGRPVEVECVYIPEEGRGTLCVSS 138 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC+LTC+FC+TGTQKLVRNLTAEE+L Q+LLAR LGDFP + G ++P+ GRKI+ Sbjct: 139 QVGCTLTCTFCHTGTQKLVRNLTAEEVLSQLLLARDRLGDFPDRDAPVGAMVPNEGRKIT 198 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R G+EIGVMLA Sbjct: 199 NMVMMGMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLA 258 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ISLHAV ++LR++LVPIN+KYPL+ LI+ACR+YPGLSNARRITFEYVMLK +NDS DA Sbjct: 259 ISLHAVRDELRDLLVPINKKYPLKDLIEACRNYPGLSNARRITFEYVMLKDVNDSLEDAK 318 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 LI++LKGIP+KINLIPFNPWPG Y CSD I+ F++ I +GY+SPIRTPRG DILA Sbjct: 319 GLIQLLKGIPSKINLIPFNPWPGTNYQCSDWDQIMKFADFINSAGYASPIRTPRGRDILA 378 Query: 361 ACGQLKSLSKRIPKVPR---QEMQITG 384 ACGQLKS S+R+ K R + M I G Sbjct: 379 ACGQLKSESERMRKTERLAYEAMMIVG 405 >gi|90421104|ref|ZP_01229006.1| radical SAM enzyme, coproporphyrinogen III oxidase [Aurantimonas manganoxydans SI85-9A1] gi|90334596|gb|EAS48376.1| radical SAM enzyme, coproporphyrinogen III oxidase [Aurantimonas manganoxydans SI85-9A1] Length = 413 Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 231/381 (60%), Positives = 299/381 (78%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +K SL+G+ R L EAL +G+P + +RMR +Q+W W+YVRG+ DF M++++ + Sbjct: 23 MAGDEKPSLVGLDRAALGEALSAVGVPDKQIRMRVAQLWHWLYVRGVADFSQMANVAGTL 82 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L++ ++I PE+VDE+IS DGTRKWL RFP R G PVEIETVYIPE+ RGTLC+SS Sbjct: 83 RQALHEAYTIARPEVVDEQISVDGTRKWLFRFPPRGAGRPVEIETVYIPEEGRGTLCISS 142 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC+LTC+FC+TGTQ+LVRNL +EI+ Q+L AR LGD P G ++P+ GR ++ Sbjct: 143 QVGCTLTCTFCHTGTQRLVRNLLPDEIVGQILAARERLGDLPDAATPAGAIVPNGGRLVT 202 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+V+MGMGEPL N+DNV++++++ASD GLS SKRRITLSTSG VP+I + GEE+GV LA Sbjct: 203 NVVLMGMGEPLYNYDNVRQAMAVASDGEGLSLSKRRITLSTSGVVPSIVKAGEEMGVSLA 262 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ISLHAV ++LR+ LVPIN+KYPL+ L+DACR YPGLSNARRITFEYVMLK +NDS DA Sbjct: 263 ISLHAVRDELRDELVPINKKYPLKDLLDACRAYPGLSNARRITFEYVMLKDVNDSMADAK 322 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L++IL+GIPAKINLIPFNPWPG Y CSD I F++ + ++GY+SPIRTPRG DI A Sbjct: 323 ELVRILRGIPAKINLIPFNPWPGSAYECSDWDQIERFADYVNQAGYASPIRTPRGRDIFA 382 Query: 361 ACGQLKSLSKRIPKVPRQEMQ 381 ACGQLKS S+R+ K R ++ Sbjct: 383 ACGQLKSESERLKKSARDRLE 403 >gi|319406423|emb|CBI80063.1| conserved hypothetical protein [Bartonella sp. 1-1C] Length = 409 Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 250/381 (65%), Positives = 301/381 (79%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 + K LIG+ +E+ +AL IG+P+ +MR Q+W W+YVRGI F M +IS+ + Sbjct: 23 ITKQPKLPLIGLSHDEMAQALQAIGVPEHQTQMRVRQLWHWLYVRGISHFDEMLNISKPM 82 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R +L +HFSI PEIV E+IS DGTRKWLLRFPA G PVE+ETVYIPE+ RGTLC+SS Sbjct: 83 REMLKEHFSIARPEIVAEQISQDGTRKWLLRFPASGAGKPVEVETVYIPEEGRGTLCISS 142 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC+LTCSFC+TGTQKLVRNLT EEIL+Q+L+AR LGDFP + + +IP GRKI+ Sbjct: 143 QVGCTLTCSFCHTGTQKLVRNLTVEEILVQLLVARDCLGDFPDKKTPDSAIIPIEGRKIT 202 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 NIVMMGMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R G+EIGVMLA Sbjct: 203 NIVMMGMGEPLYNFEAVKKALLIASDGNGLSLSKRRITLSTSGVVPRIIRTGKEIGVMLA 262 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ISLHAV + LR+ILVPIN+KYPL +L++ACR+YPGLSNA+RITFEYVMLK +NDS DA Sbjct: 263 ISLHAVHDALRDILVPINKKYPLALLMEACRNYPGLSNAKRITFEYVMLKNVNDSLDDAR 322 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 LI++LKGIPAKINLIPFNPWPG Y CSD + I F++ I ++GY+SPIR PRG DILA Sbjct: 323 RLIQLLKGIPAKINLIPFNPWPGSNYQCSDWEHIERFADIINKAGYASPIRVPRGRDILA 382 Query: 361 ACGQLKSLSKRIPKVPRQEMQ 381 ACGQLKS SKR+ K R ++ Sbjct: 383 ACGQLKSASKRLAKSERMRLE 403 >gi|240849701|ref|YP_002971089.1| hypothetical protein Bgr_00190 [Bartonella grahamii as4aup] gi|240266824|gb|ACS50412.1| hypothetical protein Bgr_00190 [Bartonella grahamii as4aup] Length = 408 Score = 504 bits (1299), Expect = e-141, Method: Composition-based stats. Identities = 251/376 (66%), Positives = 301/376 (80%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIG+ ++E+ +AL +G+P+ RMR Q+W W+YVRG+ +F M +IS+ ++ L Sbjct: 28 KLSLIGLSQDEMVQALKTVGVPEHQTRMRVRQLWHWLYVRGVSNFDEMLNISKAMQETLK 87 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 HFSI PEIV E+IS DGTRKWLLRFPAR G PVEIETVYIPE+ RGTLC+SSQVGC+ Sbjct: 88 CHFSIARPEIVGEQISKDGTRKWLLRFPARGAGRPVEIETVYIPEEGRGTLCLSSQVGCT 147 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQ LVRNLTAEEIL Q+L+AR LGDFP +G ++P GRKI+NIVMM Sbjct: 148 LTCSFCHTGTQMLVRNLTAEEILAQLLVARDCLGDFPDKNTPDGAIVPIEGRKITNIVMM 207 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R GEEIGVMLAISLHA Sbjct: 208 GMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVVPGIIRTGEEIGVMLAISLHA 267 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V + LR++LVPIN+KYPL +L++ACR+YPGLSNA+RITFEYVMLK INDS DA LIK+ Sbjct: 268 VHDTLRDMLVPINKKYPLALLMEACRNYPGLSNAKRITFEYVMLKDINDSLDDAKRLIKL 327 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKGIPAKINLIPFNPWPG Y CSD + I F++ + ++GY+SPIR PRG DILAACGQL Sbjct: 328 LKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADVVNQAGYASPIRIPRGRDILAACGQL 387 Query: 366 KSLSKRIPKVPRQEMQ 381 KS S+R+ K R ++ Sbjct: 388 KSASERLRKSERLRLE 403 >gi|49473706|ref|YP_031748.1| hypothetical protein BQ00190 [Bartonella quintana str. Toulouse] gi|81647409|sp|Q6G1C0|RLMN_BARQU RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|49239209|emb|CAF25526.1| hypothetical protein BQ00190 [Bartonella quintana str. Toulouse] Length = 409 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 255/378 (67%), Positives = 304/378 (80%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIG+ + E+ EAL IG+P++ RMR Q+W W+YVRG+ +F + +IS+ +R +L Sbjct: 28 KRSLIGLSQNEMAEALKAIGVPEQQTRMRVRQLWHWLYVRGVSNFDEILNISKPIREMLK 87 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 HFSI PEIV E+IS DGTRKWLLRFPAR G PVEIETVYIPE+ RGTLC+SSQVGC+ Sbjct: 88 NHFSIARPEIVGEQISKDGTRKWLLRFPAREDGRPVEIETVYIPEEGRGTLCLSSQVGCT 147 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFCYTGTQ LVRNLTAEEIL Q+L+AR LGDFP +G ++P GRKI+NIVMM Sbjct: 148 LTCSFCYTGTQVLVRNLTAEEILAQLLVARDCLGDFPNRTTPDGAIVPVEGRKITNIVMM 207 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R GEEIGVMLA+SLHA Sbjct: 208 GMGEPLYNFEVVKKALLIASDGDGLSLSKRRITLSTSGVVPEIVRAGEEIGVMLAVSLHA 267 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V + LR++LVPIN+KYPL +LIDACR+YPGLSNA+RITFEYVMLKGINDS DA LI++ Sbjct: 268 VHDTLRDMLVPINKKYPLALLIDACRNYPGLSNAKRITFEYVMLKGINDSLDDAKRLIQL 327 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKGIPAKINLIPFNPWPG Y CSD + I F++ + ++GY+SPIR PRG DILAACGQL Sbjct: 328 LKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADVVNQAGYASPIRIPRGRDILAACGQL 387 Query: 366 KSLSKRIPKVPRQEMQIT 383 KS S+R+ K R +++ Sbjct: 388 KSASERLRKSGRLQIEYA 405 >gi|319403510|emb|CBI77089.1| conserved hypothetical protein [Bartonella rochalimae ATCC BAA-1498] Length = 409 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 250/376 (66%), Positives = 302/376 (80%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K LIG+ +E+ +AL IG+P+ +MR QIW W+YVRG+ F M +IS+ +R +L Sbjct: 28 KLPLIGLSHDEIAQALQAIGVPEHQTQMRVRQIWHWLYVRGVSHFDEMLNISKPMREMLK 87 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +HFSI PEIV E+IS DGTRKWLLRFPA G PVEIETVYIPE++RGTLC+SSQVGC+ Sbjct: 88 EHFSIARPEIVAEQISQDGTRKWLLRFPASGAGKPVEIETVYIPEEARGTLCISSQVGCT 147 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLT EEIL+Q+L+AR LGDFP + +G +IP GRKI+N+VMM Sbjct: 148 LTCSFCHTGTQKLVRNLTVEEILVQLLVARDCLGDFPDKKTPDGAIIPIEGRKITNVVMM 207 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG +P I R G+EIGVMLAISLHA Sbjct: 208 GMGEPLYNFEAVKKALLIASDGNGLSLSKRRITLSTSGVIPGIIRTGKEIGVMLAISLHA 267 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V + LR+ILVPIN+KYPL +L++ACR+YPGLSNA+RITFEYVMLK +NDS DA LI++ Sbjct: 268 VHDTLRDILVPINKKYPLALLMEACRNYPGLSNAKRITFEYVMLKNVNDSLDDARKLIQL 327 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKGIPAKINLIPFNPWPG Y CSD + I F++ I ++GY+SPIR PRG DILAACGQL Sbjct: 328 LKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADIINKAGYASPIRMPRGRDILAACGQL 387 Query: 366 KSLSKRIPKVPRQEMQ 381 KS SKR+ K R ++ Sbjct: 388 KSASKRLAKSERIRLE 403 >gi|49474851|ref|YP_032892.1| hypothetical protein BH00200 [Bartonella henselae str. Houston-1] gi|81648360|sp|Q6G592|RLMN_BARHE RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|49237656|emb|CAF26836.1| hypothetical protein BH00200 [Bartonella henselae str. Houston-1] Length = 408 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 250/376 (66%), Positives = 301/376 (80%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIG+ ++E+ EAL IGIP+R RMR Q+W W+YVRG+ +F M +IS+ ++ + Sbjct: 28 KLSLIGLSQDEMAEALKAIGIPERQTRMRVRQLWHWLYVRGVSNFDEMLNISKPMQEIFK 87 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +HFSI PEI E+IS DGTRKWLLRFP R G PVEIETVYIPE+ RGTLC+SSQVGC+ Sbjct: 88 KHFSIARPEIAGEQISKDGTRKWLLRFPPRGAGRPVEIETVYIPEEGRGTLCLSSQVGCT 147 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFCYTGTQ LVRNLTAEEIL Q+L+AR LGDFP +G ++P GRKI+NIVMM Sbjct: 148 LTCSFCYTGTQVLVRNLTAEEILAQLLVARDCLGDFPDRNTPDGAIVPVEGRKITNIVMM 207 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP + R GEEIGVMLAISLHA Sbjct: 208 GMGEPLYNFEAVKKALLIASDGNGLSLSKRRITLSTSGVVPGMIRTGEEIGVMLAISLHA 267 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V++ LR++LVPIN+KYPL +L+DACR YPGLSNA+RITFEYVMLK +NDS DA L+++ Sbjct: 268 VNDTLRDMLVPINKKYPLALLMDACRQYPGLSNAKRITFEYVMLKDVNDSLDDAKRLVQL 327 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKGIPAKINLIPFNPWPG Y CSD + I F++ + ++GY+SPIR PRG DILAACGQL Sbjct: 328 LKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADVVNQAGYASPIRIPRGRDILAACGQL 387 Query: 366 KSLSKRIPKVPRQEMQ 381 KS S+R+ K R ++ Sbjct: 388 KSASERLRKSERLHLE 403 >gi|209883455|ref|YP_002287312.1| radical SAM enzyme, Cfr family [Oligotropha carboxidovorans OM5] gi|209871651|gb|ACI91447.1| radical SAM enzyme, Cfr family [Oligotropha carboxidovorans OM5] Length = 404 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 228/377 (60%), Positives = 286/377 (75%), Gaps = 6/377 (1%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K SLIG+ R+EL L ++G+ + +MR Q+W W+YVRG R F+ MS++S+++R L Sbjct: 28 EKPSLIGLSRDELMARLGELGVADKQRKMRAQQLWHWMYVRGARSFEEMSNVSKDMRAQL 87 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 HF++ PE+V E++S DGTRKWLLR P +G E+E VYIPE RGTLCVSSQVGC Sbjct: 88 AAHFTVDRPEVVAEQVSNDGTRKWLLRMPGDGVGRAHEVECVYIPETDRGTLCVSSQVGC 147 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L CSFC+TGTQ+LVRNLTA EI+ QV++AR L D+ E P+ R ++N+VM Sbjct: 148 TLNCSFCHTGTQRLVRNLTAGEIVGQVMVARDRLNDWVDRET------PNGNRLVTNVVM 201 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFD V+ +L I SD G+ S+RRITLSTSG VPNIAR+GEE GVMLAISLH Sbjct: 202 MGMGEPLYNFDAVRDALKIMSDGEGIGLSRRRITLSTSGVVPNIARIGEETGVMLAISLH 261 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV ++LRN LVP+NRKYP+ L+DACR+YPG SNARRITFEYVMLKG+NDS DA L+K Sbjct: 262 AVRDELRNELVPLNRKYPIAQLLDACRNYPGASNARRITFEYVMLKGVNDSLDDAKLLVK 321 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGIPAKINLIPFNPWPG Y CSD + I FSE + +GYSSP+RTPRG DILAACGQ Sbjct: 322 LLKGIPAKINLIPFNPWPGSVYECSDWEQIEQFSEYVFNAGYSSPVRTPRGRDILAACGQ 381 Query: 365 LKSLSKRIPKVPRQEMQ 381 LKS ++++ R ++ Sbjct: 382 LKSETEKLSVRERDALR 398 >gi|115522068|ref|YP_778979.1| radical SAM protein [Rhodopseudomonas palustris BisA53] gi|122298191|sp|Q07VN5|RLMN_RHOP5 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|115516015|gb|ABJ03999.1| radical SAM enzyme, Cfr family [Rhodopseudomonas palustris BisA53] Length = 403 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 232/379 (61%), Positives = 280/379 (73%), Gaps = 2/379 (0%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 L K SLIG+ R EL E L IG+ +MR Q+W WIYVRG DF M+ IS+E+R Sbjct: 20 LAKPSLIGLSRPELMERLGGIGVAAAQRKMRAQQLWHWIYVRGATDFAQMTSISKELRAQ 79 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG-PVEIETVYIPEKSRGTLCVSSQV 122 L +HF++ PE+V E+IS DGTRKWLLR P+ G E+E VYIPE RGTLCVSSQV Sbjct: 80 LAEHFTVDRPEVVTEQISNDGTRKWLLRLPSGQAGERAHEVECVYIPETDRGTLCVSSQV 139 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L CSFC+TGTQKLVRNLTA EI+ QV++A+ LGD+P R I+N+ Sbjct: 140 GCTLNCSFCHTGTQKLVRNLTAGEIVGQVMVAKDRLGDWP-MAVASTQDAGENNRLITNV 198 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL NF+ V+ +L I SD+ G+ S+RRITLSTSG VPNI R G+EIGVMLAIS Sbjct: 199 VMMGMGEPLYNFEAVRDALLIVSDNEGIGLSRRRITLSTSGVVPNIFRTGDEIGVMLAIS 258 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHAV ++LRN LVP+N+KYPL+ L+ ACR YPG SNARRITFEYVMLKG+NDS DA L Sbjct: 259 LHAVRDELRNELVPLNKKYPLKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDAKLL 318 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +K+LKG+PAKINLIPFNPWPG Y CSD I FSE I +GYSSP+RTPRG DILAAC Sbjct: 319 VKLLKGVPAKINLIPFNPWPGSAYQCSDWDQIEKFSEYIFNAGYSSPVRTPRGRDILAAC 378 Query: 363 GQLKSLSKRIPKVPRQEMQ 381 GQLKS ++++ R ++ Sbjct: 379 GQLKSETEKLSARERDALR 397 >gi|121601967|ref|YP_989610.1| radical SAM protein [Bartonella bacilliformis KC583] gi|205829667|sp|A1UUF7|RLMN_BARBK RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|120614144|gb|ABM44745.1| radical SAM enzyme, Cfr family [Bartonella bacilliformis KC583] Length = 414 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 252/377 (66%), Positives = 300/377 (79%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 + +SLIG+ +E+ +AL IG+P+ RMR Q+W W YVRG+ F M +IS+ +R +L Sbjct: 28 QSQSLIGLSHDEMVQALRSIGVPEHQTRMRVRQLWHWFYVRGVSSFDEMFNISKPMREML 87 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +FSI YPEIV+E+IS DGT KWLLRFPAR G PVEIETVYIP + RGTLCVSSQVGC Sbjct: 88 KDNFSIAYPEIVEEQISKDGTYKWLLRFPARGAGKPVEIETVYIPGEGRGTLCVSSQVGC 147 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +LTCSFCYTGTQKLVRNLTAEEILLQ+L AR+ LGDFPG + + + RKI+NIVM Sbjct: 148 TLTCSFCYTGTQKLVRNLTAEEILLQLLFARNRLGDFPGKDKPDHSSLSEERRKITNIVM 207 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R GEEIGVMLA+SLH Sbjct: 208 MGMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVVPEIIRAGEEIGVMLAVSLH 267 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV + LR++LVPIN+KYPL ML++ACR+YPGLSNA+RITFEYVMLK +NDS DA LIK Sbjct: 268 AVCDSLRDVLVPINKKYPLSMLMEACRNYPGLSNAKRITFEYVMLKDVNDSLDDAKKLIK 327 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGIPAKINLIPFNPWPG Y CSD + I F++ I R+GY+SPIR PRG DILAACG Sbjct: 328 LLKGIPAKINLIPFNPWPGSHYECSDWEQIERFADVINRAGYASPIRMPRGRDILAACGN 387 Query: 365 LKSLSKRIPKVPRQEMQ 381 LKS S+R+ K R +++ Sbjct: 388 LKSTSERLRKSERLQLE 404 >gi|205829897|sp|Q6NCS3|RLMN_RHOPA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase Length = 399 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 228/377 (60%), Positives = 284/377 (75%), Gaps = 7/377 (1%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIG+ R +L + L +G+ +MR Q+W W+YVRG RDF M+++S+E+R +L Sbjct: 23 KPSLIGLSRAQLCDRLGDVGVAPPQRKMRAQQLWHWMYVRGARDFSEMTNVSKEMRAMLA 82 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIG-GPVEIETVYIPEKSRGTLCVSSQVGC 124 +HF++ PE+V E+IS DGTRKWLLR P+ G E+E VYIPE RGTLCVSSQVGC Sbjct: 83 EHFTVDRPEVVAEQISADGTRKWLLRLPSGGDGQKAHEVECVYIPETDRGTLCVSSQVGC 142 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC+TGTQ+LVRNLTA EI+ QV++AR LGD+ E P+ R I+NIVM Sbjct: 143 TLNCAFCHTGTQRLVRNLTAGEIVGQVMVARDRLGDWIDRET------PNGNRLITNIVM 196 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFD V+ +L I SD+ G+ S+RRITLSTSG VPNI R G+EIGVMLAISLH Sbjct: 197 MGMGEPLYNFDAVRDALLIVSDNEGIGISRRRITLSTSGVVPNIKRTGDEIGVMLAISLH 256 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV ++LR+ LVP+NRKYPL+ L+ ACR YPG SNARRITFEYVMLKG+NDS DA L++ Sbjct: 257 AVRDELRDELVPLNRKYPLKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDARKLVQ 316 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGIPAKINLIPFNPWPG Y CSD I FSE + +GYSSP+RTPRG DILAACGQ Sbjct: 317 LLKGIPAKINLIPFNPWPGSNYECSDWDQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 376 Query: 365 LKSLSKRIPKVPRQEMQ 381 LKS ++++ R ++ Sbjct: 377 LKSETEKLSVRERNALR 393 >gi|319898214|ref|YP_004158307.1| Fe-S containing enzyme [Bartonella clarridgeiae 73] gi|319402178|emb|CBI75709.1| putative Fe-S containing enzyme [Bartonella clarridgeiae 73] Length = 411 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 246/376 (65%), Positives = 299/376 (79%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIG+ R+E+ +AL IG+P+ MR Q+W W+YVRG+ +F M +IS+ +R + Sbjct: 28 KLSLIGLSRDEMTQALQVIGVPEHQKGMRVRQLWHWLYVRGVSNFDEMLNISKPMREMFK 87 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 HFSI P+IV E+IS DGTRKWLL+FPA PVEIE VYIPE+ RGTLC+SSQVGC+ Sbjct: 88 DHFSIARPKIVAEQISQDGTRKWLLQFPASGTERPVEIEMVYIPEERRGTLCISSQVGCT 147 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLT EEIL+Q+L+AR LGDFP +G +IP GRKI+NIVMM Sbjct: 148 LTCSFCHTGTQKLVRNLTTEEILVQLLVARDCLGDFPDKNIPDGAIIPIEGRKITNIVMM 207 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG +P I R G+EIGVMLAISLHA Sbjct: 208 GMGEPLYNFEAVKKALLIASDGNGLSLSKRRITLSTSGVIPGIIRTGKEIGVMLAISLHA 267 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V + LRNILVPIN+KYPL +L++ACR+YPGLSNA+RITFEYVMLK +NDS DA L+++ Sbjct: 268 VHDKLRNILVPINKKYPLALLMEACRNYPGLSNAKRITFEYVMLKNVNDSLGDAKRLVQL 327 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKGIPAKINLIPFNPWPG Y CSD + I F++ + ++GY+SPIR PRG DILAACGQL Sbjct: 328 LKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADIVNKAGYASPIRMPRGRDILAACGQL 387 Query: 366 KSLSKRIPKVPRQEMQ 381 KS S+R+ K R E++ Sbjct: 388 KSASERLRKSERMELE 403 >gi|39933473|ref|NP_945749.1| hypothetical protein RPA0396 [Rhodopseudomonas palustris CGA009] gi|39647319|emb|CAE25840.1| Cfr family protein [Rhodopseudomonas palustris CGA009] Length = 424 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 228/377 (60%), Positives = 284/377 (75%), Gaps = 7/377 (1%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIG+ R +L + L +G+ +MR Q+W W+YVRG RDF M+++S+E+R +L Sbjct: 48 KPSLIGLSRAQLCDRLGDVGVAPPQRKMRAQQLWHWMYVRGARDFSEMTNVSKEMRAMLA 107 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIG-GPVEIETVYIPEKSRGTLCVSSQVGC 124 +HF++ PE+V E+IS DGTRKWLLR P+ G E+E VYIPE RGTLCVSSQVGC Sbjct: 108 EHFTVDRPEVVAEQISADGTRKWLLRLPSGGDGQKAHEVECVYIPETDRGTLCVSSQVGC 167 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC+TGTQ+LVRNLTA EI+ QV++AR LGD+ E P+ R I+NIVM Sbjct: 168 TLNCAFCHTGTQRLVRNLTAGEIVGQVMVARDRLGDWIDRET------PNGNRLITNIVM 221 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFD V+ +L I SD+ G+ S+RRITLSTSG VPNI R G+EIGVMLAISLH Sbjct: 222 MGMGEPLYNFDAVRDALLIVSDNEGIGISRRRITLSTSGVVPNIKRTGDEIGVMLAISLH 281 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV ++LR+ LVP+NRKYPL+ L+ ACR YPG SNARRITFEYVMLKG+NDS DA L++ Sbjct: 282 AVRDELRDELVPLNRKYPLKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDARKLVQ 341 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGIPAKINLIPFNPWPG Y CSD I FSE + +GYSSP+RTPRG DILAACGQ Sbjct: 342 LLKGIPAKINLIPFNPWPGSNYECSDWDQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 401 Query: 365 LKSLSKRIPKVPRQEMQ 381 LKS ++++ R ++ Sbjct: 402 LKSETEKLSVRERNALR 418 >gi|192288832|ref|YP_001989437.1| radical SAM enzyme, Cfr family [Rhodopseudomonas palustris TIE-1] gi|254807199|sp|B3Q9D7|RLMN_RHOPT RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|192282581|gb|ACE98961.1| radical SAM enzyme, Cfr family [Rhodopseudomonas palustris TIE-1] Length = 399 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 228/377 (60%), Positives = 283/377 (75%), Gaps = 7/377 (1%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIG+ R +L + L +G+ +MR Q+W W+YVRG RDF M+++S+E+R L Sbjct: 23 KPSLIGLSRAQLCDRLGDVGVAPPQRKMRAQQLWHWMYVRGARDFSEMTNVSKEMRATLA 82 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIG-GPVEIETVYIPEKSRGTLCVSSQVGC 124 +HF++ PE+V E+IS DGTRKWLLR P+ G E+E VYIPE RGTLCVSSQVGC Sbjct: 83 EHFTVDRPEVVAEQISADGTRKWLLRLPSGGDGQKAHEVECVYIPETDRGTLCVSSQVGC 142 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC+TGTQ+LVRNLTA EI+ QV++AR LGD+ E P+ R I+NIVM Sbjct: 143 TLNCAFCHTGTQRLVRNLTAGEIVGQVMVARDRLGDWIDRET------PNGNRLITNIVM 196 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFD V+ +L I SD+ G+ S+RRITLSTSG VPNI R G+EIGVMLAISLH Sbjct: 197 MGMGEPLYNFDAVRDALLIVSDNEGIGISRRRITLSTSGVVPNIKRTGDEIGVMLAISLH 256 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV ++LR+ LVP+NRKYPL+ L+ ACR YPG SNARRITFEYVMLKG+NDS DA L++ Sbjct: 257 AVRDELRDELVPLNRKYPLKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDARKLVQ 316 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGIPAKINLIPFNPWPG Y CSD I FSE + +GYSSP+RTPRG DILAACGQ Sbjct: 317 LLKGIPAKINLIPFNPWPGSNYECSDWDQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 376 Query: 365 LKSLSKRIPKVPRQEMQ 381 LKS ++++ R ++ Sbjct: 377 LKSETEKLSVRERNALR 393 >gi|260429104|ref|ZP_05783081.1| radical SAM enzyme, Cfr family [Citreicella sp. SE45] gi|260419727|gb|EEX12980.1| radical SAM enzyme, Cfr family [Citreicella sp. SE45] Length = 398 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 208/379 (54%), Positives = 279/379 (73%), Gaps = 8/379 (2%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +++G+ R+ L AL+++G P++ +MR +Q+W+WIY G+RDF M++++++ R L Sbjct: 23 KLNIVGLTRDALRAALIEMGTPEKQAKMRVNQVWQWIYHWGVRDFSVMTNLAKDYRAKLE 82 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 HF I PEIV +++S DGTRK+L+R I G E+ETVYIPE+ RGTLC+SSQVGC+ Sbjct: 83 AHFEIALPEIVSKQVSADGTRKYLVR-----IAGGHEVETVYIPEEGRGTLCISSQVGCT 137 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLTA EI+ QV+LAR L ++P G P R +SNIV+M Sbjct: 138 LTCSFCHTGTQKLVRNLTAGEIVGQVMLARDDLDEWPAPGTGTGEDGP---RLLSNIVLM 194 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV+ ++ I D G++ S+RRITLSTSG VP IAR EEIG ++A+S HA Sbjct: 195 GMGEPLYNFDNVRDAMKIVMDGEGIALSRRRITLSTSGVVPEIARCAEEIGCLMAVSFHA 254 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++RN LVPIN+++ +E L++A R YP LSN+ RITFEYVMLK +NDS DA L+ + Sbjct: 255 TTDEVRNRLVPINKRWNIEELLNALREYPRLSNSERITFEYVMLKDVNDSDADARRLVNL 314 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +KGIPAKINLIPFN WPG Y SD + I F++ + ++GY+SPIRTPRG DI+AACGQL Sbjct: 315 IKGIPAKINLIPFNEWPGAPYERSDWERIERFADIVHKAGYASPIRTPRGEDIMAACGQL 374 Query: 366 KSLSKRIPKVPRQEMQITG 384 KS ++R K Q TG Sbjct: 375 KSATERARKSRAQIAAETG 393 >gi|319407894|emb|CBI81546.1| conserved hypothetical protein [Bartonella schoenbuchensis R1] Length = 405 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 246/378 (65%), Positives = 297/378 (78%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIG+ +E+ +AL +IG+P+ RMR Q+W W+YVRG+ F M +I++ +R +L Sbjct: 24 KLSLIGLSHDEMVQALEEIGVPKHQTRMRVRQLWHWLYVRGVSHFDEMLNIAKPMRRMLQ 83 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 HFSI PEIV+E+ S DGT KWLLRFPAR G PVEIETVYIPE+ RGTLC+SSQVGC+ Sbjct: 84 NHFSIARPEIVEEQTSNDGTCKWLLRFPARGAGKPVEIETVYIPEEGRGTLCISSQVGCT 143 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQ LVRNLTAEEIL Q+L+AR LGDFP +G + GRK++NIVMM Sbjct: 144 LTCSFCHTGTQTLVRNLTAEEILAQLLVARDRLGDFPEKNTPDGAAVSIEGRKVTNIVMM 203 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+ VKK+L IASD GLS SKRRITLSTSG VP I R G+EIGVMLAISLHA Sbjct: 204 GMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVVPEIIRAGKEIGVMLAISLHA 263 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V + LR+ILVPIN+KYPL +L+DACR+YPGLSNA+RITFEYVMLK +NDS DA L+++ Sbjct: 264 VHDALRDILVPINKKYPLTLLMDACRNYPGLSNAKRITFEYVMLKDVNDSLDDAKQLVQL 323 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKGIPAKINLIPFN WPG Y CSD + I F++ I ++GY+SP+R PRG DILAACGQL Sbjct: 324 LKGIPAKINLIPFNSWPGSHYQCSDWEQIERFADVINQAGYASPVRMPRGRDILAACGQL 383 Query: 366 KSLSKRIPKVPRQEMQIT 383 KS S+R+ K R + T Sbjct: 384 KSASERLRKSERLHCENT 401 >gi|299133126|ref|ZP_07026321.1| radical SAM enzyme, Cfr family [Afipia sp. 1NLS2] gi|298593263|gb|EFI53463.1| radical SAM enzyme, Cfr family [Afipia sp. 1NLS2] Length = 403 Score = 497 bits (1281), Expect = e-139, Method: Composition-based stats. Identities = 223/377 (59%), Positives = 286/377 (75%), Gaps = 6/377 (1%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 + SLIG+ R EL L ++G+P++ +MR Q+W W+YVRG + F M+++S+++R L Sbjct: 27 DRPSLIGLSRAELMACLGELGVPEKQRKMRAQQLWHWMYVRGAQTFADMTNVSKDMRTQL 86 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 F++ PE+V E+IS DGTRKWLLR P +G E+E VYIPE RGTLCVSSQVGC Sbjct: 87 EARFTVDRPEVVAEQISNDGTRKWLLRLPGDGVGRAHEVECVYIPETDRGTLCVSSQVGC 146 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L CSFC+TGTQ+LVRNLTA EI+ QV++AR L D+ E P+ R ++N+VM Sbjct: 147 TLNCSFCHTGTQRLVRNLTAGEIVGQVMVARDRLNDWVDRET------PNGNRLVTNVVM 200 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFD V+ +L+I D+ G++ S+RRITLSTSG VPNI R+GEE GVMLAISLH Sbjct: 201 MGMGEPLYNFDAVRDALNIVMDNEGIALSRRRITLSTSGVVPNIGRMGEETGVMLAISLH 260 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV ++LRN LVP+N+KYPL L+DACR+YPG SN+RRITFEYVMLKG+NDS DA L+K Sbjct: 261 AVRDELRNELVPLNKKYPLAQLLDACRNYPGASNSRRITFEYVMLKGVNDSLDDAKLLVK 320 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGIPAKINLIPFNPWPG +Y CSD + I FSE + +GYSSP+RTPRG DILAACGQ Sbjct: 321 LLKGIPAKINLIPFNPWPGSKYECSDWEQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 380 Query: 365 LKSLSKRIPKVPRQEMQ 381 LKS ++++ R ++ Sbjct: 381 LKSETEKLSVRERDALR 397 >gi|86747220|ref|YP_483716.1| hypothetical protein RPB_0093 [Rhodopseudomonas palustris HaA2] gi|123293381|sp|Q2J405|RLMN_RHOP2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|86570248|gb|ABD04805.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2] Length = 399 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 226/377 (59%), Positives = 284/377 (75%), Gaps = 7/377 (1%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIG+ R EL E L IG+ +MR Q+W W+YVRG RDF M+++S+E+R L Sbjct: 23 KPSLIGLSRAELAERLGAIGVAPAQRKMRAQQLWHWMYVRGARDFAEMTNVSKEMRATLA 82 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARC-IGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +H ++ PE+V E+IS DGTRKWLLR P+ + E+E VYIPE RGTLCVSSQVGC Sbjct: 83 EHCTVDRPEVVAEQISADGTRKWLLRLPSGDDVQKAHEVECVYIPETDRGTLCVSSQVGC 142 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L CSFC+TGTQ+LVRNLTA EI+ QV++AR LGD+ E P+ R ++N+VM Sbjct: 143 TLNCSFCHTGTQRLVRNLTAGEIVGQVMVARDRLGDWIDRET------PNGNRLVTNVVM 196 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NF+ V+ +L I +D+ G+ S+RR+TLSTSG VPNIAR G+EIGVMLAISLH Sbjct: 197 MGMGEPLYNFEAVRDALLIVTDNEGIGISRRRVTLSTSGVVPNIARTGDEIGVMLAISLH 256 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV ++LR+ LVP+NRKYPL+ L+ ACR YPG SNARRITFEYVMLKG+NDS DA L++ Sbjct: 257 AVRDELRDELVPLNRKYPLKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDARRLVQ 316 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGIPAKINLIPFNPWPG +Y CSD I FSE + +GYSSP+RTPRG DILAACGQ Sbjct: 317 LLKGIPAKINLIPFNPWPGSKYECSDWDQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 376 Query: 365 LKSLSKRIPKVPRQEMQ 381 LKS ++++ R ++ Sbjct: 377 LKSETEKLSVRERDALR 393 >gi|319404936|emb|CBI78538.1| conserved hypothetical protein [Bartonella sp. AR 15-3] Length = 409 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 250/377 (66%), Positives = 297/377 (78%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K LIG+ ++E+ +AL IG+P+ RMR Q+W W+YVRG+ F M +IS+ +R +L Sbjct: 27 PKLPLIGLSQDEMAQALRIIGVPEHQTRMRVHQLWHWLYVRGVSHFDEMLNISKPMRKML 86 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 HFSI PEIV E+IS DGTRKWLLRFPA PVEIE VYIPE+ RGTLCVSSQVGC Sbjct: 87 KDHFSIARPEIVAEQISQDGTRKWLLRFPASGTERPVEIEMVYIPEEGRGTLCVSSQVGC 146 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +LTCSFC+TGTQKLVRNLTAEEIL+Q+L+AR LGDFP G +IP GRKI+NIVM Sbjct: 147 TLTCSFCHTGTQKLVRNLTAEEILVQLLVARDCLGDFPDKNTPNGAIIPIEGRKITNIVM 206 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NF+ VKK+L IASD G S SKRRITLSTSG +P I R G+EIGVMLAISLH Sbjct: 207 MGMGEPLYNFEAVKKALLIASDGNGFSLSKRRITLSTSGVIPGIIRTGKEIGVMLAISLH 266 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV + LR+ILVPIN+KYPL +L++ACR+YPGLSNA+RITFEYVMLK +NDS DA LI+ Sbjct: 267 AVHDTLRDILVPINKKYPLALLMEACRNYPGLSNAKRITFEYVMLKNVNDSLDDAKKLIQ 326 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGIPAKINLIPFNPWPG Y CSD + I F++ I ++GY+SPIR PRG DILAACGQ Sbjct: 327 LLKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADLINKAGYASPIRMPRGRDILAACGQ 386 Query: 365 LKSLSKRIPKVPRQEMQ 381 LKS SKR+ K R ++ Sbjct: 387 LKSASKRLCKSERMRLE 403 >gi|86139440|ref|ZP_01058009.1| radical SAM enzyme, Cfr family protein [Roseobacter sp. MED193] gi|85823943|gb|EAQ44149.1| radical SAM enzyme, Cfr family protein [Roseobacter sp. MED193] Length = 395 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 204/379 (53%), Positives = 273/379 (72%), Gaps = 9/379 (2%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+GM R+ + +AL+ IG+P++ +MR QIW+WIY G RDF M+++S+ +R L Sbjct: 23 KTNLVGMTRDAMRQALVGIGVPEKQAKMRVGQIWQWIYQWGKRDFSEMTNLSKALRAQLE 82 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + F I PE+V +++S DGTRK+L+R I G E+E VYIPE RGTLC+SSQVGC+ Sbjct: 83 EGFEIAIPEVVSKQVSEDGTRKYLVR-----IAGGHEVEVVYIPETDRGTLCISSQVGCT 137 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLTA EI+ QV++AR L ++P + G P R +SNIV+M Sbjct: 138 LTCSFCHTGTQKLVRNLTAAEIIGQVMMARDDLDEWP----VPGTRNPDEARLLSNIVLM 193 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV+ ++ IA D G+ S+RRITLSTSG VP IAR +EIG +LA+S HA Sbjct: 194 GMGEPLYNFDNVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAQEIGCLLAVSFHA 253 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++R+ LVPIN+++ +E L++A R YP L+N+ RITFEYVML +NDS DA L+K+ Sbjct: 254 TTDEVRDKLVPINKRWNIEALLEALRAYPRLANSERITFEYVMLDHVNDSKEDAHRLVKL 313 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 ++GIPAKINLIPFN WPG Y S I F++ I +GY+SPIR PRG DI+AACGQL Sbjct: 314 IEGIPAKINLIPFNEWPGSPYQRSSNNRIHAFADIIHDAGYASPIRKPRGEDIMAACGQL 373 Query: 366 KSLSKRIPKVPRQEMQITG 384 KS ++R K +Q G Sbjct: 374 KSATERARKSRKQIEAEAG 392 >gi|316931629|ref|YP_004106611.1| radical SAM protein [Rhodopseudomonas palustris DX-1] gi|315599343|gb|ADU41878.1| radical SAM enzyme, Cfr family [Rhodopseudomonas palustris DX-1] Length = 399 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 227/377 (60%), Positives = 283/377 (75%), Gaps = 7/377 (1%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIG+ R +L + L +IG+ +MR Q+W W+YVRG RDF M+++S+E+R L Sbjct: 23 KPSLIGLSRAQLCDRLGEIGVAPPQRKMRAQQLWHWMYVRGARDFSEMTNVSKEMRATLA 82 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIG-GPVEIETVYIPEKSRGTLCVSSQVGC 124 +H ++ PE+V E+IS DGTRKWLLR P+ G E+E VYIPE RGTLCVSSQVGC Sbjct: 83 EHVTVDRPEVVAEQISADGTRKWLLRLPSGGDGQKAHEVECVYIPETDRGTLCVSSQVGC 142 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC+TGTQ+LVRNLTA EI+ QV++AR L D+ E P+ R I+NIVM Sbjct: 143 TLNCAFCHTGTQRLVRNLTAGEIVGQVMVARDRLNDWIDRET------PNGNRLITNIVM 196 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFD V+ +L I SD+ G+ S+RRITLSTSG VPNI R G+EIGVMLAISLH Sbjct: 197 MGMGEPLYNFDAVRDALLIVSDNEGIGISRRRITLSTSGVVPNIKRTGDEIGVMLAISLH 256 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV ++LR+ LVP+NRKYPL+ L+ ACR YPG SNARRITFEYVMLKG+ND+ DA L++ Sbjct: 257 AVRDELRDELVPLNRKYPLKELLQACRDYPGASNARRITFEYVMLKGVNDTIDDARKLVQ 316 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGIPAKINLIPFNPWPG +Y CSD I FSE I +GYSSP+RTPRG DILAACGQ Sbjct: 317 LLKGIPAKINLIPFNPWPGSKYECSDWDQIEKFSEYIFNAGYSSPVRTPRGRDILAACGQ 376 Query: 365 LKSLSKRIPKVPRQEMQ 381 LKS ++++ R ++ Sbjct: 377 LKSETEKLSVRERDALR 393 >gi|148251858|ref|YP_001236443.1| putative pyruvate formate lyase activating enzyme 2 (yfgB) [Bradyrhizobium sp. BTAi1] gi|205829672|sp|A5E8P3|RLMN_BRASB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|146404031|gb|ABQ32537.1| 23S rRNA m(2)A-2503 methyltransferase [Bradyrhizobium sp. BTAi1] Length = 403 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 229/377 (60%), Positives = 279/377 (74%), Gaps = 7/377 (1%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIG+ R EL L +G+P+R +MR Q+W WIY RG R F MS +S++ R L Sbjct: 27 KPSLIGLSRAELAARLGDVGVPERQQKMRVQQLWHWIYFRGARSFDEMSSVSKDTRTALA 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARC-IGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F++ PE+V E+IS DGTRKWLLR P+ + E+E VYIPE RGTLCVSSQVGC Sbjct: 87 ERFTVDRPEVVAEQISNDGTRKWLLRLPSGDDLQKAHEVECVYIPETDRGTLCVSSQVGC 146 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC+TGTQ+LVRNLTA EI+ QV++AR L D+ E P R I+NIVM Sbjct: 147 TLNCAFCHTGTQRLVRNLTAGEIVGQVMVARDRLNDWADRET------PHGNRLITNIVM 200 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFD V+ +L I SD+ G+ S+RRITLSTSG VPNI R GEEIGVMLAISLH Sbjct: 201 MGMGEPLYNFDAVRDALLIVSDNEGIGISRRRITLSTSGVVPNIKRAGEEIGVMLAISLH 260 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV ++LR+ LVP+NRKYP+ L+ ACR YPG SNARRITFEYVMLKG+NDS DA L+K Sbjct: 261 AVRDELRDELVPLNRKYPIAELLQACRDYPGASNARRITFEYVMLKGVNDSLDDARLLVK 320 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGIPAKINLIPFNPWPG Y CSD + I FSE + +GYSSP+RTPRG DILAACGQ Sbjct: 321 LLKGIPAKINLIPFNPWPGSAYECSDWEQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 380 Query: 365 LKSLSKRIPKVPRQEMQ 381 LKS ++++ RQ ++ Sbjct: 381 LKSETEKLSARERQALR 397 >gi|158422376|ref|YP_001523668.1| hypothetical protein AZC_0752 [Azorhizobium caulinodans ORS 571] gi|205829661|sp|A8IQ73|RLMN_AZOC5 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|158329265|dbj|BAF86750.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571] Length = 406 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 221/372 (59%), Positives = 287/372 (77%), Gaps = 2/372 (0%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 SL G+ RE+L AL IG+P+R +MR +Q+W WIY+RG DF M+++S+ +R L + Sbjct: 23 PSLAGLDREKLGLALAAIGVPERERKMRVNQLWHWIYLRGATDFAEMTNVSKTLRTQLAE 82 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG-PVEIETVYIPEKSRGTLCVSSQVGCS 125 H+S+ PEIV E++S DGTRKWLLR PA G P E+E VYIPE+ RGTLCVSSQVGC+ Sbjct: 83 HYSLARPEIVVEQVSQDGTRKWLLRLPAETPGERPHEVEAVYIPERDRGTLCVSSQVGCT 142 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVM 184 L C+FC+TGTQ+LVRNLTA EI+ QVL+AR LGD+PG E G +P+ G + ++NIV Sbjct: 143 LNCAFCHTGTQRLVRNLTAAEIVAQVLVARDRLGDYPGRERAVGPGLPTEGDRLVTNIVF 202 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL +D+V +++ I +D GL KRRIT+STSG VP I ++G E+G MLAISLH Sbjct: 203 MGMGEPLYAYDSVAEAIEILADGDGLGLGKRRITVSTSGVVPEIEKLGREVGPMLAISLH 262 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV +DLR++LVPIN+KYP+ L++ACR YP SNA+RITFEYVMLKG+NDSP DA L+K Sbjct: 263 AVRDDLRDVLVPINKKYPIAELMEACRTYPAASNAKRITFEYVMLKGVNDSPADARALVK 322 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L+G+PAKINLIPFNPWPG +Y CSD + I FS+ + R+GY+SP+RTPRG DILAACGQ Sbjct: 323 LLEGVPAKINLIPFNPWPGTKYECSDWETIEKFSDIVFRAGYASPVRTPRGRDILAACGQ 382 Query: 365 LKSLSKRIPKVP 376 LKS ++++ Sbjct: 383 LKSETEKLSARE 394 >gi|298293307|ref|YP_003695246.1| radical SAM enzyme, Cfr family [Starkeya novella DSM 506] gi|296929818|gb|ADH90627.1| radical SAM enzyme, Cfr family [Starkeya novella DSM 506] Length = 409 Score = 494 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 216/373 (57%), Positives = 283/373 (75%), Gaps = 2/373 (0%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + SL G+ R L EAL +IG+ +R RMR +Q+W WIY+RG+ F M+++ + +R L Sbjct: 25 RRSLAGLDRAGLAEALAEIGVSEREQRMRVAQLWHWIYLRGVTSFDEMTNVGKGLRAKLE 84 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG-PVEIETVYIPEKSRGTLCVSSQVGC 124 + F++ PE+V E++S DGTRKWLLR P G P ++E VYIPE RGTLCVSSQVGC Sbjct: 85 EAFTLARPEVVVEQVSNDGTRKWLLRLPPDIAGDKPHDVEMVYIPESDRGTLCVSSQVGC 144 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK-ISNIV 183 +L CSFC+TGTQ+LVRNLTA EI+ QV++AR LGD+PG E G +P+ G + ++NIV Sbjct: 145 TLNCSFCHTGTQRLVRNLTAAEIVAQVMVARDRLGDYPGQERAVGPGLPTEGDRLVTNIV 204 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MGMGEPL +D+V +++ + +D GL KRRIT+STSG VP I ++G E+G MLAISL Sbjct: 205 FMGMGEPLYAYDSVARAIEVLADGEGLGIGKRRITVSTSGVVPEIEKLGREVGPMLAISL 264 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HAV ++LR++LVPIN+KYPL+ L+DACR YP SNA+RITFEYVMLKG+NDSP DA L+ Sbjct: 265 HAVRDELRDVLVPINKKYPLKDLLDACRTYPAASNAKRITFEYVMLKGVNDSPADAKALV 324 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++L GIPAKINLIPFNPWPG +Y CSD + I FS+ + R+GYSSP+RTPRG DILAACG Sbjct: 325 RLLAGIPAKINLIPFNPWPGTKYECSDWETIERFSDIVFRAGYSSPVRTPRGRDILAACG 384 Query: 364 QLKSLSKRIPKVP 376 QLKS ++++ Sbjct: 385 QLKSETEKLSARE 397 >gi|119385232|ref|YP_916288.1| radical SAM protein [Paracoccus denitrificans PD1222] gi|205829795|sp|A1B4Z8|RLMN_PARDP RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|119374999|gb|ABL70592.1| 23S rRNA m(2)A-2503 methyltransferase [Paracoccus denitrificans PD1222] Length = 391 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 206/369 (55%), Positives = 275/369 (74%), Gaps = 10/369 (2%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+G+ RE+L EAL++ G P+R RMR QIW+WIY G+RDF M++++++ R LL + Sbjct: 23 RNLVGLTREQLHEALIQAGTPERQARMRVGQIWQWIYHWGVRDFAQMTNLAKDYRALLAE 82 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 +F I PEIV +IS DGTRK+LLR I G E+ETVYIPE++RGTLC+SSQVGC+L Sbjct: 83 NFEIALPEIVTRQISADGTRKYLLR-----ISGGHEVETVYIPEENRGTLCISSQVGCTL 137 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 TCSFC+TGTQKLVRNLTA EI+ QV++AR LG++P R +SN+V+MG Sbjct: 138 TCSFCHTGTQKLVRNLTAGEIVGQVMVARDDLGEWPKP-----GAPKDETRLVSNVVLMG 192 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL NFDNV+ ++ + D G+S S+RRITLSTSG VP IA+ EEIG +LA+S HA Sbjct: 193 MGEPLYNFDNVRDAMKVVMDGEGISLSRRRITLSTSGIVPEIAKTAEEIGCLLAVSFHAT 252 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 +++ R+ LVP+NRK+ +E L++A R YP LSN+ RITFEYVML G+NDS DA L++++ Sbjct: 253 TDETRDKLVPVNRKWNIETLLNALREYPRLSNSERITFEYVMLDGVNDSDEDARRLVRLI 312 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +GIPAK+NLIPFN WPG Y S + I F++ + ++GY+SPIRTPRG DI+AACGQLK Sbjct: 313 RGIPAKVNLIPFNEWPGSPYRRSGWERIEAFADIVHKAGYASPIRTPRGEDIMAACGQLK 372 Query: 367 SLSKRIPKV 375 S ++R K Sbjct: 373 SATERGRKT 381 >gi|163738104|ref|ZP_02145520.1| hypothetical protein RGBS107_06819 [Phaeobacter gallaeciensis BS107] gi|161388720|gb|EDQ13073.1| hypothetical protein RGBS107_06819 [Phaeobacter gallaeciensis BS107] Length = 394 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 203/379 (53%), Positives = 273/379 (72%), Gaps = 10/379 (2%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ R++L E L+ G P++ +MR QIW+WIY G RDF M+++++ R L+ Sbjct: 23 KINLVGLTRDQLRETLIAHGTPEKQAKMRVGQIWQWIYQWGKRDFAEMTNLAKAYRADLD 82 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +HF I PE+V +++S DGTRK+L+R I G E+E VYIPE+ RGTLC+SSQVGC+ Sbjct: 83 EHFEIATPEVVSKQVSTDGTRKYLVR-----IAGGHEVEVVYIPEEGRGTLCISSQVGCT 137 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLTA EI+ Q+++AR L ++P R +SNIV+M Sbjct: 138 LTCSFCHTGTQKLVRNLTAAEIVGQIMMARDDLDEWPVP-----GAPKDETRLLSNIVLM 192 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+NV+ ++ IA D G+S S+RRITLSTSG VP IAR EEIG +LA+S HA Sbjct: 193 GMGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCLLAVSFHA 252 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++R+ LVPIN+++ +E L++A R YP L+N+ RITFEYVML G+NDS DA L+++ Sbjct: 253 TTDEVRDKLVPINKRWNIEALLEALRAYPRLTNSERITFEYVMLNGVNDSDEDAHRLVEL 312 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +KGIPAK+NLIPFN WPG Y S I F+ I ++GY+SPIRTPRG DILAACGQL Sbjct: 313 IKGIPAKVNLIPFNEWPGSPYTRSSNNRIHAFANIIYQAGYASPIRTPRGEDILAACGQL 372 Query: 366 KSLSKRIPKVPRQEMQITG 384 KS ++R K +Q G Sbjct: 373 KSATERARKSRKQIEAEAG 391 >gi|90421563|ref|YP_529933.1| hypothetical protein RPC_0035 [Rhodopseudomonas palustris BisB18] gi|122995691|sp|Q21DC2|RLMN_RHOPB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|90103577|gb|ABD85614.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18] Length = 399 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 228/377 (60%), Positives = 280/377 (74%), Gaps = 7/377 (1%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + SLIG+ R EL EAL IG+ +MR Q+W W+Y RG+++F M+ IS+E+R L Sbjct: 23 RPSLIGLSRAELAEALGGIGVAASQRKMRAQQLWHWMYFRGVQEFAEMTSISKEMRSQLA 82 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGP-VEIETVYIPEKSRGTLCVSSQVGC 124 +HF++ PE+V E+IS DGTRKWLLR P+ G E+E VYIPE RGTLCVSSQVGC Sbjct: 83 EHFTVARPEVVAEQISNDGTRKWLLRLPSGVSGEKAHEVECVYIPETDRGTLCVSSQVGC 142 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L CSFC+TGTQKLVRNLTA EI+ QV++AR L D+ E P+ R ++N+VM Sbjct: 143 TLNCSFCHTGTQKLVRNLTAGEIVGQVMVARDRLNDWADRET------PNGNRLVTNVVM 196 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFD V+ +L I SD+ G+ S+RR+TLSTSG VPNI R GEEIGVMLAISLH Sbjct: 197 MGMGEPLYNFDAVRDALLIVSDNEGIGISRRRVTLSTSGVVPNIVRAGEEIGVMLAISLH 256 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV ++LR+ LVP+NRKYPL L+ ACR YPG SNARRITFEYVMLK +NDS DA L+K Sbjct: 257 AVRDELRDELVPLNRKYPLAELLQACRDYPGASNARRITFEYVMLKDVNDSLDDAKLLVK 316 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L GIPAKINLIPFNPWPG Y CSD I FSE I +GYSSP+RTPRG DILAACGQ Sbjct: 317 LLSGIPAKINLIPFNPWPGTAYKCSDWDQIEKFSEYIFNAGYSSPVRTPRGRDILAACGQ 376 Query: 365 LKSLSKRIPKVPRQEMQ 381 LKS ++++ R+ ++ Sbjct: 377 LKSETEKLTAREREALR 393 >gi|146337410|ref|YP_001202458.1| putative pyruvate formate lyase activating enzyme 2 (yfgB) [Bradyrhizobium sp. ORS278] gi|205829673|sp|A4YJY2|RLMN_BRASO RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|146190216|emb|CAL74208.1| putative pyruvate formate lyase activating enzyme 2 (yfgB) [Bradyrhizobium sp. ORS278] Length = 403 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 227/377 (60%), Positives = 280/377 (74%), Gaps = 7/377 (1%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIG+ R EL L IG+P+R +MR Q+W W+Y RG R F M+ +S++ R+ L Sbjct: 27 KPSLIGLSRAELAARLGDIGVPERQQKMRVQQLWHWLYFRGARSFDEMTSVSKDTRNGLA 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARC-IGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F++ PE+V E+IS DGTRKWLLR P+ + E+E VYIPE RGTLCVSSQVGC Sbjct: 87 ERFTVDRPEVVAEQISNDGTRKWLLRLPSGDDLQKAHEVECVYIPETDRGTLCVSSQVGC 146 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC+TGTQ+LVRNLTA EI+ Q+++AR L D+ E P R I+NIVM Sbjct: 147 TLNCAFCHTGTQRLVRNLTAGEIVGQIMVARDRLNDWADRET------PHGNRLITNIVM 200 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NF+ V+ +L I SD+ G+ S+RRITLSTSG VPNI R GEEIGVMLAISLH Sbjct: 201 MGMGEPLYNFEAVRDALLIVSDNEGIGISRRRITLSTSGVVPNIKRAGEEIGVMLAISLH 260 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV ++LRN LVP+NRKYP+ L+ ACR YPG SNARRITFEYVMLKG+NDS DA L+K Sbjct: 261 AVRDELRNELVPLNRKYPIAELLQACRDYPGASNARRITFEYVMLKGVNDSLDDARLLVK 320 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGIPAKINLIPFNPWPG Y CSD + I FSE + +GYSSP+RTPRG DILAACGQ Sbjct: 321 LLKGIPAKINLIPFNPWPGSAYECSDWEQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 380 Query: 365 LKSLSKRIPKVPRQEMQ 381 LKS ++++ RQ ++ Sbjct: 381 LKSETEKLSARERQALR 397 >gi|323136337|ref|ZP_08071419.1| radical SAM enzyme, Cfr family [Methylocystis sp. ATCC 49242] gi|322398411|gb|EFY00931.1| radical SAM enzyme, Cfr family [Methylocystis sp. ATCC 49242] Length = 392 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 226/376 (60%), Positives = 279/376 (74%), Gaps = 3/376 (0%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K SL GM R E+ + L G+P+R +RMR SQ+W WIY RG RDF M +IS+ +R L Sbjct: 13 EKPSLAGMTRAEIADTLRAFGLPEREIRMRVSQLWHWIYFRGARDFGEMLNISKSLRLTL 72 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRF-PARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + F + +PEIV+E++S DGTRKWLLR P E+E VYIPE RGTLCVSSQVG Sbjct: 73 DGAFGLRHPEIVEEQVSVDGTRKWLLRLAPVDAQDKGAEVECVYIPESDRGTLCVSSQVG 132 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG--RKISN 181 C+L CSFC+TGTQKLVRNLT+ EI+ Q+L+AR LGDFP E ++PS R +SN Sbjct: 133 CTLNCSFCHTGTQKLVRNLTSAEIIGQLLVARQRLGDFPDRERPTDGLVPSGEGVRAVSN 192 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 IV MGMGEPL N DNV ++ + +D GLS SKRRIT+STSG VP I R+G E G LAI Sbjct: 193 IVFMGMGEPLYNIDNVMAAIEVMADGDGLSLSKRRITVSTSGVVPQIERLGAECGPALAI 252 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHAV +DLRN LVP+NRKYP++ L+ ACR YPG SNARRITFEYVMLKG+NDSP +A Sbjct: 253 SLHAVRDDLRNELVPLNRKYPIKELLQACRDYPGASNARRITFEYVMLKGVNDSPAEARE 312 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L+++LKG+PAKINLIPFNPWPG Y CSD + I FS+ + +GY+SP+RTPRG DILAA Sbjct: 313 LVRLLKGVPAKINLIPFNPWPGAPYECSDWETIERFSDIVFNAGYASPVRTPRGRDILAA 372 Query: 362 CGQLKSLSKRIPKVPR 377 CGQLKS ++++ R Sbjct: 373 CGQLKSETEKLRARAR 388 >gi|163742501|ref|ZP_02149887.1| radical SAM enzyme, Cfr family protein [Phaeobacter gallaeciensis 2.10] gi|161384086|gb|EDQ08469.1| radical SAM enzyme, Cfr family protein [Phaeobacter gallaeciensis 2.10] Length = 394 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 202/379 (53%), Positives = 273/379 (72%), Gaps = 10/379 (2%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ R++L E L+ G P++ +MR QIW+WIY G RDF M+++++ R L+ Sbjct: 23 KINLVGLTRDQLRETLIAHGTPEKQAKMRVGQIWQWIYQWGKRDFAEMTNLAKAYRADLD 82 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +HF I PE++ +++S DGTRK+L+R I G E+E VYIPE+ RGTLC+SSQVGC+ Sbjct: 83 EHFEIATPEVMSKQVSTDGTRKYLVR-----IAGGHEVEVVYIPEEGRGTLCISSQVGCT 137 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLTA EI+ Q+++AR L ++P R +SNIV+M Sbjct: 138 LTCSFCHTGTQKLVRNLTAAEIVGQIMMARDDLDEWPVP-----GAPKDETRLLSNIVLM 192 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+NV+ ++ IA D G+S S+RRITLSTSG VP IAR EEIG +LA+S HA Sbjct: 193 GMGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCLLAVSFHA 252 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++R+ LVPIN+++ +E L++A R YP L+N+ RITFEYVML G+NDS DA L+++ Sbjct: 253 TTDEVRDKLVPINKRWNIEALLEALRAYPRLTNSERITFEYVMLNGVNDSDEDAHRLVEL 312 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +KGIPAK+NLIPFN WPG Y S I F+ I ++GY+SPIRTPRG DILAACGQL Sbjct: 313 IKGIPAKVNLIPFNEWPGSPYTRSSNNRIHAFANIIYQAGYASPIRTPRGEDILAACGQL 372 Query: 366 KSLSKRIPKVPRQEMQITG 384 KS ++R K +Q G Sbjct: 373 KSATERARKSRKQIEAEAG 391 >gi|149201312|ref|ZP_01878287.1| hypothetical protein RTM1035_16842 [Roseovarius sp. TM1035] gi|149145645|gb|EDM33671.1| hypothetical protein RTM1035_16842 [Roseovarius sp. TM1035] Length = 392 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 206/378 (54%), Positives = 274/378 (72%), Gaps = 9/378 (2%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+G+ R+ L E L+ G P++ +MR +QIW+WIY G+RDF M+++++ R L + Sbjct: 23 INLVGLTRDALREVLIAHGTPEKQAKMRVNQIWQWIYQWGVRDFHAMTNLAKAYRAQLAE 82 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 +F + PE+V +++S DGTRK+L+R I G E+E VYIPE RGTLC+SSQVGC+L Sbjct: 83 NFVVTIPEVVSKQVSADGTRKYLVR-----IAGGHEVEVVYIPETDRGTLCISSQVGCTL 137 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 TCSFC+TGTQKLVRNLTA EI+ QV+LAR L ++P + G R ISNIV+MG Sbjct: 138 TCSFCHTGTQKLVRNLTAGEIIGQVMLARDDLNEWPKPGEPAG----ERPRLISNIVLMG 193 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL NFDNV+ ++ IA D G+S S+RRITLSTSG VP IA+ EEIG +LA+S HA Sbjct: 194 MGEPLYNFDNVRDAMKIAMDGEGISLSRRRITLSTSGVVPEIAKTAEEIGCLLAVSFHAT 253 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++++R+ LVPIN+++ + L+D R YP LSN+ RITFEYVMLKG+NDS DA L++++ Sbjct: 254 TDEVRDTLVPINKRWNIATLLDTLREYPRLSNSERITFEYVMLKGVNDSDADARRLVQLI 313 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 KGIPAKINLIPFN WPG Y SD + I F++ I ++GY+SPIRTPRG DI+AACGQLK Sbjct: 314 KGIPAKINLIPFNEWPGSPYQRSDWERIERFADIIYKAGYASPIRTPRGEDIMAACGQLK 373 Query: 367 SLSKRIPKVPRQEMQITG 384 S ++R K Q G Sbjct: 374 SATERSRKSRAQIEAEAG 391 >gi|126727284|ref|ZP_01743120.1| radical SAM enzyme, Cfr family protein [Rhodobacterales bacterium HTCC2150] gi|126703493|gb|EBA02590.1| radical SAM enzyme, Cfr family protein [Rhodobacterales bacterium HTCC2150] Length = 392 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 205/379 (54%), Positives = 271/379 (71%), Gaps = 9/379 (2%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ R+ + +AL+ G+P++ +MRT QIW WIY +G+R F M+++S+ R L Sbjct: 22 KINLVGLTRDGMRDALIAAGLPEKQGKMRTGQIWAWIYEKGVRTFDVMTNLSKGYRAELA 81 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + F I PE+V +IS DGTRK+L+R I G E+E VYIPEK RGTLC+SSQVGC+ Sbjct: 82 ESFEIAVPEVVTRQISEDGTRKYLVR-----IAGGHEVEVVYIPEKDRGTLCISSQVGCT 136 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLTA EI+ QV++AR LG++P R +SNIV+M Sbjct: 137 LTCSFCHTGTQKLVRNLTAGEIIGQVMIARDDLGEWPEL----AQSPNVEARLLSNIVLM 192 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF++V+ ++ IA D G+S S+RRITLSTSG VP IAR +EIG MLA+S HA Sbjct: 193 GMGEPLYNFESVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTADEIGCMLAVSFHA 252 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++D+R+ LVPIN+K+ +E L+DA R YP SN+ RITFEYVML G+NDS DA L+++ Sbjct: 253 TTDDVRDKLVPINKKWNIEALLDALRAYPKASNSERITFEYVMLNGVNDSDEDAHRLVEL 312 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +KGIPAKINLIPFN WPG Y S I F++ + +GYSSP+R PRG DI+AACGQL Sbjct: 313 IKGIPAKINLIPFNEWPGAPYQRSSNNRIRAFADIVFNAGYSSPVRRPRGEDIMAACGQL 372 Query: 366 KSLSKRIPKVPRQEMQITG 384 KS ++R K ++ G Sbjct: 373 KSETERARKSRKEIAAEAG 391 >gi|89052760|ref|YP_508211.1| hypothetical protein Jann_0269 [Jannaschia sp. CCS1] gi|88862309|gb|ABD53186.1| 23S rRNA m(2)A-2503 methyltransferase [Jannaschia sp. CCS1] Length = 410 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 205/378 (54%), Positives = 274/378 (72%), Gaps = 9/378 (2%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +LIG+ R+ L AL++ G P++ +MRT QIW+W+Y +G+RDF M+++S++ R +L + Sbjct: 41 VNLIGLTRDGLRAALIEAGTPEKQAKMRTGQIWQWLYQKGVRDFASMTNLSKDYRAMLAE 100 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 F PE+V ++S DGTRK+L+R I G E+E VYIPE RGTLC+SSQVGC+L Sbjct: 101 TFVADVPEVVSRQVSADGTRKYLVR-----IAGGHEVEVVYIPEVDRGTLCISSQVGCTL 155 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 TCSFC+TGTQKLVRNLTA EI+ QV+LAR L ++ G + R +SNIV+MG Sbjct: 156 TCSFCHTGTQKLVRNLTAGEIIGQVMLARDDLDEWV----PTGEGSDAKPRLVSNIVLMG 211 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL NF+NV+ ++ IA D G+S S+RRITLSTSG VP IA+ +EIG LA+S HA Sbjct: 212 MGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIAKTAQEIGCQLAVSFHAT 271 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++D+R+ LVPIN+++P+ L+DA R YP +SN+ RITFEYVMLK +NDS DA L++++ Sbjct: 272 TDDVRDKLVPINKRWPIADLLDALRDYPRVSNSERITFEYVMLKDVNDSDADARRLVQLI 331 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 KGIPAKINLIPFN WPG Y SD I F++ I ++GY+SPIRTPRG DI+AACGQLK Sbjct: 332 KGIPAKINLIPFNEWPGAPYERSDWARIEAFADIIYKAGYASPIRTPRGEDIMAACGQLK 391 Query: 367 SLSKRIPKVPRQEMQITG 384 S ++R K +Q G Sbjct: 392 SATERARKSRKQIEAEAG 409 >gi|294675798|ref|YP_003576413.1| radical SAM family protein [Rhodobacter capsulatus SB 1003] gi|294474618|gb|ADE84006.1| radical SAM family protein [Rhodobacter capsulatus SB 1003] Length = 393 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 205/379 (54%), Positives = 282/379 (74%), Gaps = 10/379 (2%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ R++L +AL+ G P++ +MR Q+W+WIY G+RDF M++++++ R LL+ Sbjct: 24 KVNLVGLTRDQLRDALIAAGTPEKQAKMRVGQVWQWIYHWGVRDFGAMTNLAKDYRALLD 83 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +HF I PE+V ++S DGTRK+LLR I G E+E VYIPE++RGTLC+SSQVGC+ Sbjct: 84 RHFEIALPEVVTCQVSMDGTRKYLLR-----IAGGHEVEAVYIPEENRGTLCISSQVGCT 138 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLTA EI+ QV++AR LG++P + R ISN+V+M Sbjct: 139 LTCSFCHTGTQKLVRNLTAGEIVGQVMVARDDLGEWPVPGEP-----KDETRLISNVVLM 193 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+NV+ ++ + D+ GL+ S+RRITLSTSG VP IAR EEIG +LAIS HA Sbjct: 194 GMGEPLYNFENVRDAMQVVMDNEGLTLSRRRITLSTSGVVPEIARTAEEIGCLLAISFHA 253 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ +R+ LVP+N+K+ ++ L+DA R YP LSN+ RITFEYVMLKG+NDS DA L+++ Sbjct: 254 TTDAVRDKLVPVNKKWNIKTLLDALRDYPRLSNSERITFEYVMLKGVNDSDDDARRLVRL 313 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 ++GIPAKINLIPFN WPG Y SD + I F++ + ++GY++PIRTPRG DI+AACGQL Sbjct: 314 IQGIPAKINLIPFNEWPGSPYKRSDWERIEAFADIVYKAGYAAPIRTPRGEDIMAACGQL 373 Query: 366 KSLSKRIPKVPRQEMQITG 384 KS ++R K + TG Sbjct: 374 KSATERARKSKAEIDAETG 392 >gi|255261946|ref|ZP_05341288.1| radical SAM enzyme, Cfr family [Thalassiobium sp. R2A62] gi|255104281|gb|EET46955.1| radical SAM enzyme, Cfr family [Thalassiobium sp. R2A62] Length = 395 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 200/378 (52%), Positives = 272/378 (71%), Gaps = 10/378 (2%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+G+ R+ + + L++ G P++ +MR QIW+WIYV+G+R F M+++S++ R L + Sbjct: 23 INLVGLRRDAMRDVLIEHGTPEKQAKMRVGQIWQWIYVKGLRSFDEMTNLSKDYRAKLAE 82 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 +F I PE+V +++S DGTRK+L+R I G E+E VYIPE+ RGTLC+SSQVGC+L Sbjct: 83 NFVIEVPEVVTKQVSEDGTRKYLVR-----IAGGHEVEVVYIPEEGRGTLCISSQVGCTL 137 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 TCSFC+TGTQKLVRNLT EI+ QV++AR LG++P E R +SNIV+MG Sbjct: 138 TCSFCHTGTQKLVRNLTPAEIIGQVMVARDDLGEWP-----EPGTPNDEARLLSNIVLMG 192 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL NF+ V+ ++ IA D G+S S+RRITLSTSG VP IA+ EEIG MLA+S HA Sbjct: 193 MGEPLYNFEGVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIAKTAEEIGCMLAVSFHAT 252 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++D+R+ LVPIN+++ + L+DA R YP +SN+ RITFEYVML G+ND+ DA L++++ Sbjct: 253 TDDVRDKLVPINKRWNIAELLDALRAYPKVSNSERITFEYVMLDGVNDTDEDAHRLVELI 312 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 KGIPAKINLIPFN WPG Y S I F+ I ++GY+SPIR PRG DI+AACGQLK Sbjct: 313 KGIPAKINLIPFNEWPGAPYKRSSNNRIRAFAHIIYKAGYASPIRKPRGEDIMAACGQLK 372 Query: 367 SLSKRIPKVPRQEMQITG 384 S ++R K +Q G Sbjct: 373 SATERARKSRKQIEAEAG 390 >gi|154244355|ref|YP_001415313.1| radical SAM protein [Xanthobacter autotrophicus Py2] gi|205829935|sp|A7ICB3|RLMN_XANP2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|154158440|gb|ABS65656.1| radical SAM enzyme, Cfr family [Xanthobacter autotrophicus Py2] Length = 414 Score = 491 bits (1264), Expect = e-137, Method: Composition-based stats. Identities = 223/377 (59%), Positives = 285/377 (75%), Gaps = 2/377 (0%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 SLIG+ R++L AL IG+ RMR +Q+W WIY+RG DF M+++S+ +R L Sbjct: 31 PSLIGLDRDKLGAALDAIGVRGSDRRMRVNQLWHWIYLRGATDFAEMTNVSKHLRADLAA 90 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG-PVEIETVYIPEKSRGTLCVSSQVGCS 125 +S+ PEIV E++S DGTRKWLLRFPA G P +IETVYIPE RGTLCVSSQVGC+ Sbjct: 91 AYSLARPEIVMEQVSQDGTRKWLLRFPADHPGERPHDIETVYIPESDRGTLCVSSQVGCT 150 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK-ISNIVM 184 L CSFC+TGTQ+LVRNLTA EI+ QV++AR LGD+PG + G +P+ G + ++NIV Sbjct: 151 LNCSFCHTGTQRLVRNLTAAEIVAQVMVARDRLGDYPGRDRATGPGLPTEGDRLVTNIVF 210 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL +D+VK+++ SD GL KRRIT+STSG VP I R+G E+G MLAISLH Sbjct: 211 MGMGEPLYAYDSVKEAIETLSDGDGLGLGKRRITVSTSGVVPEIERLGAEVGPMLAISLH 270 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV + LR+ LVPIN+KYP+ L++ACR YP SNA+RITFEYVMLKG+NDSP DA L+K Sbjct: 271 AVRDKLRDELVPINKKYPIAELMEACRTYPAASNAKRITFEYVMLKGVNDSPADARALVK 330 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L+G+PAKINLIPFNPWPG +Y CSD + I FS+ + R+GY+SP+RTPRG DILAACGQ Sbjct: 331 LLEGVPAKINLIPFNPWPGTQYECSDWETIERFSDIVFRAGYASPVRTPRGRDILAACGQ 390 Query: 365 LKSLSKRIPKVPRQEMQ 381 LKS S+++ R ++ Sbjct: 391 LKSESEKLSARERLALR 407 >gi|188580846|ref|YP_001924291.1| radical SAM enzyme, Cfr family [Methylobacterium populi BJ001] gi|205829790|sp|B1ZG98|RLMN_METPB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|179344344|gb|ACB79756.1| radical SAM enzyme, Cfr family [Methylobacterium populi BJ001] Length = 425 Score = 491 bits (1264), Expect = e-136, Method: Composition-based stats. Identities = 220/381 (57%), Positives = 285/381 (74%), Gaps = 5/381 (1%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K SL+G+ RE L++AL+ IG+P+R RMR SQIW W+YVRG R+F M+++ + ++ L Sbjct: 34 RKASLVGLTREGLKQALIGIGVPERETRMRVSQIWHWLYVRGAREFSEMTNVGKGLKAQL 93 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG---PVEIETVYIPEKSRGTLCVSSQ 121 +HF++ PE+V E++S DGTRKWLLR EIE VYIP RGTLCVSSQ Sbjct: 94 AEHFTLDRPEVVTEQVSRDGTRKWLLRMAPTGAHDHNRGAEIECVYIPGDDRGTLCVSSQ 153 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC+LTCSFC+TGTQ+LVRNL+ EI+ Q+++AR LGDF G + G VGR ++N Sbjct: 154 VGCTLTCSFCHTGTQRLVRNLSTAEIVSQLVVARDALGDFTGQ--MPGKDGGEVGRLVTN 211 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 IV MGMGEPL N D V ++++ SD GL+ S+RRIT+STSG VP I R+G E MLAI Sbjct: 212 IVFMGMGEPLYNLDAVIDAIAVMSDQEGLALSRRRITVSTSGVVPQIERLGLEANAMLAI 271 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHAV ++LR+ LVP+NRKYP+ L++ACR+YPGLSNARRITFEYVMLKG+NDS DA Sbjct: 272 SLHAVRDELRDELVPLNRKYPIAQLLEACRNYPGLSNARRITFEYVMLKGVNDSDADARA 331 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L+++LKGIPAKINLIPFNPWPG +Y CSD + I FSE + +GY+SP+RTPRG DILAA Sbjct: 332 LVRLLKGIPAKINLIPFNPWPGSKYECSDWERIERFSEFVFNAGYASPVRTPRGRDILAA 391 Query: 362 CGQLKSLSKRIPKVPRQEMQI 382 CGQLKS ++++ R ++ Sbjct: 392 CGQLKSETEKLRARARMMLEE 412 >gi|205829857|sp|Q28VS6|RLMN_JANSC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase Length = 392 Score = 490 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 205/378 (54%), Positives = 274/378 (72%), Gaps = 9/378 (2%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +LIG+ R+ L AL++ G P++ +MRT QIW+W+Y +G+RDF M+++S++ R +L + Sbjct: 23 VNLIGLTRDGLRAALIEAGTPEKQAKMRTGQIWQWLYQKGVRDFASMTNLSKDYRAMLAE 82 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 F PE+V ++S DGTRK+L+R I G E+E VYIPE RGTLC+SSQVGC+L Sbjct: 83 TFVADVPEVVSRQVSADGTRKYLVR-----IAGGHEVEVVYIPEVDRGTLCISSQVGCTL 137 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 TCSFC+TGTQKLVRNLTA EI+ QV+LAR L ++ G + R +SNIV+MG Sbjct: 138 TCSFCHTGTQKLVRNLTAGEIIGQVMLARDDLDEWV----PTGEGSDAKPRLVSNIVLMG 193 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL NF+NV+ ++ IA D G+S S+RRITLSTSG VP IA+ +EIG LA+S HA Sbjct: 194 MGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIAKTAQEIGCQLAVSFHAT 253 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++D+R+ LVPIN+++P+ L+DA R YP +SN+ RITFEYVMLK +NDS DA L++++ Sbjct: 254 TDDVRDKLVPINKRWPIADLLDALRDYPRVSNSERITFEYVMLKDVNDSDADARRLVQLI 313 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 KGIPAKINLIPFN WPG Y SD I F++ I ++GY+SPIRTPRG DI+AACGQLK Sbjct: 314 KGIPAKINLIPFNEWPGAPYERSDWARIEAFADIIYKAGYASPIRTPRGEDIMAACGQLK 373 Query: 367 SLSKRIPKVPRQEMQITG 384 S ++R K +Q G Sbjct: 374 SATERARKSRKQIEAEAG 391 >gi|126729978|ref|ZP_01745790.1| hypothetical protein SSE37_16408 [Sagittula stellata E-37] gi|126709358|gb|EBA08412.1| hypothetical protein SSE37_16408 [Sagittula stellata E-37] Length = 394 Score = 490 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 208/373 (55%), Positives = 278/373 (74%), Gaps = 8/373 (2%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ R L +ALL +G P++ V+MR +Q+W+W+Y G+RDF M++++++ R L+ Sbjct: 22 KINLVGLTRAGLRDALLAMGTPEKQVKMRVNQVWQWVYFWGVRDFDSMTNLAKDYRAKLD 81 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F I PEIV +++S DGTRK+L+R I G E+ETVYIPE+ RGTLCVSSQVGC+ Sbjct: 82 ATFEIALPEIVSKQVSADGTRKYLVR-----IAGGHEVETVYIPEEDRGTLCVSSQVGCT 136 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLTA EI+ Q++LAR LG++P G P R +SNIV+M Sbjct: 137 LTCSFCHTGTQKLVRNLTAGEIVGQIMLARDDLGEWPEPGTGTGEQGP---RLLSNIVLM 193 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV+ ++ IA D GLS S+RRITLSTSG VP IA+ EEIG ++A+S HA Sbjct: 194 GMGEPLYNFDNVRDAMKIAMDHEGLSMSRRRITLSTSGVVPEIAKCAEEIGCLMAVSFHA 253 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++RN LVPIN+++ + L+DA R YP LSN+ RITFEYVMLK +NDS DA L+++ Sbjct: 254 TTDEVRNKLVPINKRWNIATLLDALREYPRLSNSERITFEYVMLKDVNDSDEDARRLVRL 313 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + GIPAKINLIPFN WPG Y SD I F++ + ++GY+SPIRTPRG DI+AACGQL Sbjct: 314 IAGIPAKINLIPFNEWPGSPYERSDWSRIERFADIVYKAGYASPIRTPRGEDIMAACGQL 373 Query: 366 KSLSKRIPKVPRQ 378 KS ++R K ++ Sbjct: 374 KSATERSRKSRKE 386 >gi|91975189|ref|YP_567848.1| hypothetical protein RPD_0709 [Rhodopseudomonas palustris BisB5] gi|123763075|sp|Q13D92|RLMN_RHOPS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|91681645|gb|ABE37947.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5] Length = 398 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 227/377 (60%), Positives = 282/377 (74%), Gaps = 7/377 (1%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIG+ R EL E L IG+ +MR Q+W W+Y+RG RDF M+++S+E+R L+ Sbjct: 22 KPSLIGLSRAELAERLGHIGVAPAQRKMRAQQLWNWMYLRGARDFSEMTNVSKEMRAQLS 81 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARC-IGGPVEIETVYIPEKSRGTLCVSSQVGC 124 HF++ PE+V E+IS DGTRKWLLR P+ + E+E VYIPE RGTLCVSSQVGC Sbjct: 82 DHFTVDRPEVVAEQISNDGTRKWLLRLPSGDDVQKAHEVECVYIPETDRGTLCVSSQVGC 141 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L CSFC+TGTQ+LVRNLTA EI+ QV++AR L D+ E P+ R ++NIVM Sbjct: 142 TLNCSFCHTGTQRLVRNLTAGEIIGQVMVARDRLNDWVDRET------PNGNRLVTNIVM 195 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NF+ V+ +L I +D+ G+ S+RR+TLSTSG VPNI R GEEIGVMLAISLH Sbjct: 196 MGMGEPLYNFEAVRDALLIVTDNEGIGISRRRVTLSTSGVVPNIIRTGEEIGVMLAISLH 255 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV ++LR+ LVP+NRKYPL+ L+ ACR YPG SNARRITFEYVMLKG+NDS DA L++ Sbjct: 256 AVRDELRDELVPLNRKYPLKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDARRLVQ 315 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGIPAKINLIPFNPWPG Y CSD I FSE I +GYSSP+RTPRG DILAACGQ Sbjct: 316 LLKGIPAKINLIPFNPWPGSAYECSDWDQIEKFSEYIFNAGYSSPVRTPRGRDILAACGQ 375 Query: 365 LKSLSKRIPKVPRQEMQ 381 LKS ++++ R ++ Sbjct: 376 LKSETEKLSVRERDALR 392 >gi|84683986|ref|ZP_01011888.1| radical SAM superfamily protein [Maritimibacter alkaliphilus HTCC2654] gi|84667739|gb|EAQ14207.1| radical SAM superfamily protein [Rhodobacterales bacterium HTCC2654] Length = 394 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 211/382 (55%), Positives = 275/382 (71%), Gaps = 9/382 (2%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 L K +L+G+ R+ L +AL+ G P++ +MR Q+W+WIY +G+RDF M+++S++ R Sbjct: 21 TLGKPNLVGLTRDGLRDALIAAGTPEKQAKMRVGQVWQWIYQKGVRDFADMTNLSKDYRA 80 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 LL+QHF I PE+V +++S DGTRK+L+R I G E+E VYIPE+ RGTLCVSSQV Sbjct: 81 LLDQHFEIRVPELVSKQVSTDGTRKYLVR-----IAGGHEVEVVYIPEEDRGTLCVSSQV 135 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+LTCSFC+TGTQKLVRNLTA EI+ Q+++AR L D+ G + R +SNI Sbjct: 136 GCTLTCSFCHTGTQKLVRNLTAGEIVGQIMMARDDLEDWVPA----GKGMGERPRLVSNI 191 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 V+MGMGEPL NFD V+ ++ IA D G+S S+RRITLSTSG VP IAR G EIG MLAIS Sbjct: 192 VLMGMGEPLYNFDAVRDAMKIAMDGEGISLSRRRITLSTSGVVPEIARAGAEIGCMLAIS 251 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 HA ++ R+ LVPIN+K+ +E L+ A + YP LSN+ RITFEYVML G+NDS DA L Sbjct: 252 FHATDDETRDKLVPINKKWNIEKLLAALKEYPKLSNSERITFEYVMLDGVNDSDEDARRL 311 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 IK+++GIPAKINLIPFN WPG Y S I F+ I ++GY+SPIRTPRG DI+AAC Sbjct: 312 IKLIEGIPAKINLIPFNEWPGAPYKRSSNNRIRAFANIIYQAGYASPIRTPRGEDIMAAC 371 Query: 363 GQLKSLSKRIPKVPRQEMQITG 384 GQLKS ++R K + + G Sbjct: 372 GQLKSETERARKSKAEIAREAG 393 >gi|84515768|ref|ZP_01003129.1| radical SAM superfamily protein [Loktanella vestfoldensis SKA53] gi|84510210|gb|EAQ06666.1| radical SAM superfamily protein [Loktanella vestfoldensis SKA53] Length = 392 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 206/378 (54%), Positives = 272/378 (71%), Gaps = 10/378 (2%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+GM R+ + +AL+ G P++ +MR QIW+W+Y G+RDF M++++++ R +L Sbjct: 24 PNLVGMTRDGMRDALIAAGTPEKQAKMRVGQIWQWVYHWGVRDFAKMTNLAKDYRAMLAD 83 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 +F + PE+V ++S DGTRK+L+R I G E+E VYIPE RGTLC+SSQVGC+L Sbjct: 84 NFVVALPEVVTRQVSGDGTRKYLVR-----IAGGHEVEVVYIPETDRGTLCISSQVGCTL 138 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 TCSFC+TGTQKLVRNLTA EI+ QVL+AR LG++P + V R +SNIV+MG Sbjct: 139 TCSFCHTGTQKLVRNLTAAEIIGQVLVARDDLGEWPVQGTPKDEV-----RLLSNIVLMG 193 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL NF+NV+ ++ IA D G+ S+RRITLSTSG VP IAR +EIG LAIS HA Sbjct: 194 MGEPLYNFENVRDAMKIAMDPDGIQLSRRRITLSTSGVVPEIARTAQEIGCQLAISFHAT 253 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++++R+ LVPIN+++PL L+DA R YP +SN+ RITFEYVML G+NDS DA LIK++ Sbjct: 254 TDEVRDKLVPINKRWPLADLLDALRTYPKVSNSERITFEYVMLDGVNDSDADAHRLIKLI 313 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 GIPAKINLIPFN WPG Y S I F++ I ++GY+SPIRTPRG DI+AACGQLK Sbjct: 314 DGIPAKINLIPFNEWPGAPYKRSSNNRIRAFADIIYKAGYASPIRTPRGEDIMAACGQLK 373 Query: 367 SLSKRIPKVPRQEMQITG 384 S ++R K Q Q G Sbjct: 374 SATERARKSKAQIAQEAG 391 >gi|312114859|ref|YP_004012455.1| radical SAM enzyme, Cfr family [Rhodomicrobium vannielii ATCC 17100] gi|311219988|gb|ADP71356.1| radical SAM enzyme, Cfr family [Rhodomicrobium vannielii ATCC 17100] Length = 412 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 226/375 (60%), Positives = 285/375 (76%), Gaps = 2/375 (0%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SL GM R EL AL + G+P +MR +Q+W W Y RG DF +++I++ +R L+ Sbjct: 29 KPSLAGMTRPELMAALAEAGVPANQAKMRAAQLWNWTYARGATDFMALTNIAKSLRAELD 88 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRF-PARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 F++ PEI E+IS DGTRKWLLR P+ P EIETVYIPE RGTLC+SSQVGC Sbjct: 89 ARFTLARPEIAAEQISEDGTRKWLLRLAPSHPAERPPEIETVYIPEPDRGTLCISSQVGC 148 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI-EGMVIPSVGRKISNIV 183 +L CSFC+TGTQ+LVRNLTA EI+ Q+L+AR +GD+P + + IP RKI+NIV Sbjct: 149 TLNCSFCHTGTQRLVRNLTAAEIVGQILVARDRVGDWPDADGPADRHGIPESERKITNIV 208 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 +MGMGEPL NF+NVK ++ +A+D+ LSFSKRR+TLSTSG VP + R GEE+GVMLAISL Sbjct: 209 LMGMGEPLYNFENVKAAVGLATDADALSFSKRRLTLSTSGVVPMMHRAGEEMGVMLAISL 268 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HAV +DLR+ LVPINRKYPL+ L+ ACR YPGLSNARR+TFEYVMLKG+NDS +A L+ Sbjct: 269 HAVRDDLRDELVPINRKYPLKELLAACRAYPGLSNARRMTFEYVMLKGVNDSVAEAKELV 328 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LKGIP+KINLIPFNPWPG Y CSD I F++ + R+GY+SPIRTPRG DI+AACG Sbjct: 329 RLLKGIPSKINLIPFNPWPGTAYECSDWAQIERFADVVNRAGYASPIRTPRGRDIMAACG 388 Query: 364 QLKSLSKRIPKVPRQ 378 QLKS S+++ R+ Sbjct: 389 QLKSASEKLRASARR 403 >gi|218529897|ref|YP_002420713.1| radical SAM enzyme, Cfr family [Methylobacterium chloromethanicum CM4] gi|218522200|gb|ACK82785.1| radical SAM enzyme, Cfr family [Methylobacterium chloromethanicum CM4] Length = 425 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 220/381 (57%), Positives = 283/381 (74%), Gaps = 5/381 (1%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K SL+G+ RE L++AL+ IG+P+R RMR SQ+W WIYVRG R+F M+++ + ++ L Sbjct: 34 RKASLVGLTREGLKQALIGIGVPERETRMRVSQVWHWIYVRGAREFSEMTNVGKGLKAQL 93 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG---PVEIETVYIPEKSRGTLCVSSQ 121 HF++ PE+V E++S DGTRKWLLR EIE VYIP RGTLCVSSQ Sbjct: 94 ADHFTLERPEVVTEQVSRDGTRKWLLRMAPTGAHDHNRGAEIECVYIPGDDRGTLCVSSQ 153 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC+LTCSFC+TGTQ+LVRNL+ EI+ Q+++AR LGDF G + P GR ++N Sbjct: 154 VGCTLTCSFCHTGTQRLVRNLSTAEIVAQLVVARDALGDFTGQMPGKDGGEP--GRLVTN 211 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 IV MGMGEPL N D V ++++ SD GL+ S+RRIT+STSG VP I R+G E MLAI Sbjct: 212 IVFMGMGEPLYNLDAVIDAIAVMSDQEGLALSRRRITVSTSGVVPQIERLGLEANAMLAI 271 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHAV ++LR+ LVP+NRKYP+ L+DACR+YPGLSNARRITFEYVMLKG+NDS DA Sbjct: 272 SLHAVRDELRDELVPLNRKYPIAQLLDACRNYPGLSNARRITFEYVMLKGVNDSDADARA 331 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L+++LKGIPAKINLIPFNPWPG +Y CSD + I FSE + +GY+SP+RTPRG DILAA Sbjct: 332 LVRLLKGIPAKINLIPFNPWPGSKYECSDWERIERFSEIVFTAGYASPVRTPRGRDILAA 391 Query: 362 CGQLKSLSKRIPKVPRQEMQI 382 CGQLKS ++++ R ++ Sbjct: 392 CGQLKSETEKLRARARLMLEE 412 >gi|296446886|ref|ZP_06888822.1| radical SAM enzyme, Cfr family [Methylosinus trichosporium OB3b] gi|296255561|gb|EFH02652.1| radical SAM enzyme, Cfr family [Methylosinus trichosporium OB3b] Length = 386 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 229/379 (60%), Positives = 279/379 (73%), Gaps = 3/379 (0%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SL G R EL EAL I P+R +RMR +Q+W WIY RG RDF MS++S+ VR L Sbjct: 8 KPSLAGATRAELAEALRAIDTPEREIRMRVAQLWHWIYFRGARDFADMSNVSKIVRGKLA 67 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRF-PARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F + PE+V E++S DGTRKWLLR P EIE VYIPE RGTLCVSSQVGC Sbjct: 68 ERFGLALPEVVAEQVSTDGTRKWLLRLDPVDAADKGAEIECVYIPESDRGTLCVSSQVGC 127 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG--RKISNI 182 +L CSFC+TGTQKLVRNL+ EI+ Q+L+AR LGDFPG E ++PS R +SNI Sbjct: 128 TLNCSFCHTGTQKLVRNLSTREIIAQLLVARMRLGDFPGLEPPTDGLVPSGPDVRAVSNI 187 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 V MGMGEPL N + V+ ++ I SD GLS SKRRIT+STSG VP I R+G E G MLAIS Sbjct: 188 VFMGMGEPLYNLEQVENAIEILSDGDGLSLSKRRITVSTSGVVPQIERLGAECGPMLAIS 247 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHAV ++LRN LVP+N+KYP+ L+DACR YPG SNARRITFEYVMLKG+NDSP +A L Sbjct: 248 LHAVRDELRNELVPLNKKYPIRQLLDACRDYPGASNARRITFEYVMLKGVNDSPAEAREL 307 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +++LKGIPAKINLIPFNPWPG Y CSD + I FS+ + +GY+SP+RTPRG DILAAC Sbjct: 308 VRLLKGIPAKINLIPFNPWPGAPYECSDWETIERFSDIVFNAGYASPVRTPRGRDILAAC 367 Query: 363 GQLKSLSKRIPKVPRQEMQ 381 GQLKS ++++ R ++ Sbjct: 368 GQLKSETEKLRARARLAVE 386 >gi|23012331|ref|ZP_00052443.1| COG0820: Predicted Fe-S-cluster redox enzyme [Magnetospirillum magnetotacticum MS-1] Length = 425 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 221/380 (58%), Positives = 284/380 (74%), Gaps = 5/380 (1%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K SL+G RE L++AL+ IG+P+R RMRTSQIW W+YVRG R+F M+++ + ++ L Sbjct: 34 RKASLVGQTREGLKQALIGIGVPEREARMRTSQIWHWLYVRGAREFSEMTNVGKGLKAQL 93 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG---PVEIETVYIPEKSRGTLCVSSQ 121 QHF++ PE+V E++S DGTRKWLLR EIE VYIP RGTLCVSSQ Sbjct: 94 AQHFTLDRPEVVTEQVSRDGTRKWLLRMAPTGAHDHNRGAEIECVYIPGDDRGTLCVSSQ 153 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC+LTCSFC+TGTQ+LVRNL+ EI+ Q+++AR LGDF G + G GR ++N Sbjct: 154 VGCTLTCSFCHTGTQRLVRNLSTAEIVSQLVVARDALGDFTGQ--MPGKDGGEAGRLVTN 211 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 IV MGMGEPL N D V ++++ SD GL+ S+RRIT+STSG VP I R+G E MLAI Sbjct: 212 IVFMGMGEPLYNLDAVIDAIAVMSDPEGLALSRRRITVSTSGVVPQIERLGLEANAMLAI 271 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHAV ++LR+ LVP+NRKYP+ L++ACR+YPGLSNARRITFEYVMLKG+NDS DA Sbjct: 272 SLHAVRDELRDELVPLNRKYPIAQLLEACRNYPGLSNARRITFEYVMLKGVNDSDADARA 331 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L+++LKGIPAKINLIPFNPWPG +Y CSD + I FSE + +GY+SP+RTPRG DILAA Sbjct: 332 LVRLLKGIPAKINLIPFNPWPGSKYECSDWERIERFSEFVFNAGYASPVRTPRGRDILAA 391 Query: 362 CGQLKSLSKRIPKVPRQEMQ 381 CGQLKS ++++ R ++ Sbjct: 392 CGQLKSETEKLRARARMMLE 411 >gi|240138201|ref|YP_002962673.1| putative Fe-S containing enzyme (yfgB) [Methylobacterium extorquens AM1] gi|254560761|ref|YP_003067856.1| Fe-S containing enzyme [Methylobacterium extorquens DM4] gi|240008170|gb|ACS39396.1| putative Fe-S containing enzyme (yfgB) [Methylobacterium extorquens AM1] gi|254268039|emb|CAX23910.1| putative Fe-S containing enzyme (yfgB) [Methylobacterium extorquens DM4] Length = 425 Score = 489 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 221/381 (58%), Positives = 283/381 (74%), Gaps = 5/381 (1%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K SL+G+ RE L++AL+ IG+P+R RMR SQ+W WIYVRG R+F M+++ + ++ L Sbjct: 34 RKASLVGLTREGLKQALIGIGVPERETRMRVSQVWHWIYVRGAREFSEMTNVGKGLKAQL 93 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG---PVEIETVYIPEKSRGTLCVSSQ 121 HF++ PE+V E++S DGTRKWLLR EIE VYIP RGTLCVSSQ Sbjct: 94 ADHFTLERPEVVTEQVSRDGTRKWLLRMAPTGAHDHNRGAEIECVYIPGDDRGTLCVSSQ 153 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC+LTCSFC+TGTQ+LVRNL+ EI+ Q+++AR LGDF G + P GR ++N Sbjct: 154 VGCTLTCSFCHTGTQRLVRNLSTAEIVAQLVVARDALGDFTGQMPGKDGGEP--GRLVTN 211 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 IV MGMGEPL N D V ++++ SD GL+ S+RRIT+STSG VP I R+G E MLAI Sbjct: 212 IVFMGMGEPLYNLDAVIDAIAVMSDQEGLALSRRRITVSTSGVVPQIERLGLEANAMLAI 271 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHAV +DLR+ LVP+NRKYP+ L+DACR+YPGLSNARRITFEYVMLKG+NDS DA Sbjct: 272 SLHAVRDDLRDELVPLNRKYPIAQLLDACRNYPGLSNARRITFEYVMLKGVNDSDADARA 331 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L+++LKGIPAKINLIPFNPWPG +Y CSD + I FSE + +GY+SP+RTPRG DILAA Sbjct: 332 LVRLLKGIPAKINLIPFNPWPGSKYECSDWERIERFSEIVFTAGYASPVRTPRGRDILAA 391 Query: 362 CGQLKSLSKRIPKVPRQEMQI 382 CGQLKS ++++ R ++ Sbjct: 392 CGQLKSETEKLRARARLMLEE 412 >gi|163851067|ref|YP_001639110.1| radical SAM protein [Methylobacterium extorquens PA1] gi|205829789|sp|A9W383|RLMN_METEP RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|163662672|gb|ABY30039.1| radical SAM enzyme, Cfr family [Methylobacterium extorquens PA1] Length = 425 Score = 489 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 219/381 (57%), Positives = 283/381 (74%), Gaps = 5/381 (1%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K SL+G+ RE L++AL+ IG+P+R RMR SQ+W WIYVRG R+F M+++ + ++ L Sbjct: 34 RKASLVGLTREGLKQALIGIGVPERETRMRVSQVWHWIYVRGAREFSEMTNVGKGLKAQL 93 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG---PVEIETVYIPEKSRGTLCVSSQ 121 HF++ PE+V E++S DGTRKWLLR EIE VYIP RGTLCVSSQ Sbjct: 94 ADHFTLERPEVVTEQVSRDGTRKWLLRMAPTGAHDHNRGAEIECVYIPGDDRGTLCVSSQ 153 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC+LTCSFC+TGTQ+LVRNL+ EI+ Q+++AR LGDF G + P GR ++N Sbjct: 154 VGCTLTCSFCHTGTQRLVRNLSTAEIVAQLVVARDALGDFTGQMPGKDGGEP--GRLVTN 211 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 IV MGMGEPL N D V ++++ SD GL+ S+RRIT+STSG VP + R+G E MLAI Sbjct: 212 IVFMGMGEPLYNLDAVIDAIAVMSDQEGLALSRRRITVSTSGVVPQMERLGLEANAMLAI 271 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHAV ++LR+ LVP+NRKYP+ L+DACR+YPGLSNARRITFEYVMLKG+NDS DA Sbjct: 272 SLHAVRDELRDELVPLNRKYPIAQLLDACRNYPGLSNARRITFEYVMLKGVNDSDADARA 331 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L+++LKGIPAKINLIPFNPWPG +Y CSD + I FSE + +GY+SP+RTPRG DILAA Sbjct: 332 LVRLLKGIPAKINLIPFNPWPGSKYECSDWERIERFSEIVFTAGYASPVRTPRGRDILAA 391 Query: 362 CGQLKSLSKRIPKVPRQEMQI 382 CGQLKS ++++ R ++ Sbjct: 392 CGQLKSETEKLRARARLMLEE 412 >gi|126733857|ref|ZP_01749604.1| hypothetical protein RCCS2_06859 [Roseobacter sp. CCS2] gi|126716723|gb|EBA13587.1| hypothetical protein RCCS2_06859 [Roseobacter sp. CCS2] Length = 391 Score = 489 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 207/378 (54%), Positives = 273/378 (72%), Gaps = 10/378 (2%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++LIG+ R+++ +AL+ +G ++ +MR QIW+WIY G+RDF M+++S++ R +L + Sbjct: 23 QNLIGLSRDQMRDALIAVGTAEKQAKMRVGQIWQWIYHWGVRDFSAMTNLSKDYRAMLAE 82 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 F I PE+V ++S DGTRK+L+R I G E+E VYIPE RGTLC+SSQVGC+L Sbjct: 83 TFVIALPEVVTRQVSDDGTRKYLVR-----IAGGHEVEVVYIPETDRGTLCISSQVGCTL 137 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 TCSFC+TGTQKLVRNLTA EI+ QV++AR L ++P E R +SNIV+MG Sbjct: 138 TCSFCHTGTQKLVRNLTAAEIIGQVMIARDDLDEWP-----EPGTRTEDTRLLSNIVLMG 192 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL NF+NV+ ++ IA D G+S S+RRITLSTSG VP IAR +EIG LA+S HA Sbjct: 193 MGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAQEIGCQLAVSFHAT 252 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 +ND+R+ LVPIN+++P+ L+DA R YP +SN+ RITFEYVML G+NDS DA LIK++ Sbjct: 253 TNDVRDRLVPINKRWPISDLLDALREYPKVSNSERITFEYVMLDGVNDSDEDAHRLIKLI 312 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +GIPAKINLIPFN WPG Y S I FSE I ++GY+SP+R PRG DI+AACGQLK Sbjct: 313 EGIPAKINLIPFNEWPGAPYKRSSNNRIRKFSEIIYQAGYASPVRKPRGEDIMAACGQLK 372 Query: 367 SLSKRIPKVPRQEMQITG 384 S ++R K Q Q G Sbjct: 373 SATERARKSKAQIAQEAG 390 >gi|217979092|ref|YP_002363239.1| radical SAM enzyme, Cfr family [Methylocella silvestris BL2] gi|254807188|sp|B8EIR0|RLMN_METSB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|217504468|gb|ACK51877.1| radical SAM enzyme, Cfr family [Methylocella silvestris BL2] Length = 399 Score = 488 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 218/371 (58%), Positives = 277/371 (74%), Gaps = 1/371 (0%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 SL G+ R+ L ALL+IG P+R +RMRT+Q+W WIY RG F M ++S+ +R L + Sbjct: 23 RSLAGLTRDGLAAALLEIGAPERELRMRTAQLWHWIYHRGAGSFDDMLNVSKVLRTQLAE 82 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPV-EIETVYIPEKSRGTLCVSSQVGCS 125 F++ P+IV E++S DGTRKWL+RF + E+E VYIP+ RGTLCVSSQVGC+ Sbjct: 83 KFTLARPQIVTEQVSTDGTRKWLIRFAPSAESDRLAEVECVYIPDVDRGTLCVSSQVGCT 142 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQK VRNLTA+EI+ Q+++AR +GDFPG +G S R ++NIV M Sbjct: 143 LTCSFCHTGTQKFVRNLTAQEIIAQLIIARDRIGDFPGLAPRDGKGSNSGSRLVTNIVFM 202 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N DNV ++S+ SD GLS S+RRIT+ST+G VP + +GE+ G MLAISLHA Sbjct: 203 GMGEPLYNLDNVVDAVSVLSDGDGLSLSRRRITVSTAGVVPKLPELGEKTGAMLAISLHA 262 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V ++LRN LVP+N+KYP+ L+ ACR YPG SNARRITFEYVMLKGINDSP DA L+++ Sbjct: 263 VRDELRNTLVPLNKKYPIAALLQACRDYPGASNARRITFEYVMLKGINDSPSDARELVRL 322 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKGIPAKINLIPFNPWPG Y CSD I FS+ + +GY+SP+RTPRG DILAACGQL Sbjct: 323 LKGIPAKINLIPFNPWPGTAYECSDDAVIEKFSDIVFNAGYASPVRTPRGRDILAACGQL 382 Query: 366 KSLSKRIPKVP 376 KS ++++ Sbjct: 383 KSETEKLRARA 393 >gi|310817045|ref|YP_003965009.1| Ribosomal RNA large subunit methyltransferase N [Ketogulonicigenium vulgare Y25] gi|308755780|gb|ADO43709.1| Ribosomal RNA large subunit methyltransferase N [Ketogulonicigenium vulgare Y25] Length = 409 Score = 488 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 199/371 (53%), Positives = 273/371 (73%), Gaps = 8/371 (2%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L+GM R+++ +A++ IG+P++ +MR Q+W+WIYV G+RDF M+++++++R L + Sbjct: 38 NLVGMTRDQMRQAMIDIGVPEKQAKMRMGQLWQWIYVWGVRDFALMTNLAKDLRAKLAET 97 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 + + PE+V ++S DGTRK+L+R I G E+E VYIPE RGTLCVSSQVGC+LT Sbjct: 98 YVLAVPEVVTRQVSEDGTRKYLVR-----IAGGHEVEVVYIPETDRGTLCVSSQVGCTLT 152 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 CSFC+TGTQKLVRNLT EI+ QV++AR LG++P + P R++SNIV+MGM Sbjct: 153 CSFCHTGTQKLVRNLTTAEIVGQVMVARDDLGEWPHPGQDVSELGP---RRLSNIVLMGM 209 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL NF+NV+ ++ I D G+ S+RRITLSTSG VP IAR EIG LA+S HA + Sbjct: 210 GEPLYNFENVRDAMKICMDPEGIQLSRRRITLSTSGIVPEIARTAVEIGCQLAVSFHATT 269 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 +D+RN+LVP+NRK+ +E L+ A R YP LSN+ RITFEYVML+G+NDS DA L+++++ Sbjct: 270 DDVRNVLVPVNRKWNIEALLTALREYPALSNSERITFEYVMLRGVNDSDDDARRLVELIR 329 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 GIPAKINLIPFN WPG Y S + I F + + R+GY+SP+R PRG DI+AACGQLKS Sbjct: 330 GIPAKINLIPFNEWPGSPYQRSTKARIEAFGDIVNRAGYASPVRRPRGEDIMAACGQLKS 389 Query: 368 LSKRIPKVPRQ 378 ++R K Q Sbjct: 390 ATERARKSRAQ 400 >gi|83855374|ref|ZP_00948904.1| radical SAM enzyme, Cfr family protein [Sulfitobacter sp. NAS-14.1] gi|83843217|gb|EAP82384.1| radical SAM enzyme, Cfr family protein [Sulfitobacter sp. NAS-14.1] Length = 391 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 202/378 (53%), Positives = 268/378 (70%), Gaps = 10/378 (2%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+G+ R+ + AL+ G P++ +MR QIW+WIY G RDF M+++S+ R L + Sbjct: 23 VNLVGLTRDAMRAALIAEGTPEKQAKMRVGQIWQWIYQWGTRDFADMTNLSKAFRAELAE 82 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 F I PE+V +++S DGTRK+L+R I G E+E VYIPE+ RGTLCVSSQVGC+L Sbjct: 83 KFVIEVPEVVTKQVSEDGTRKYLVR-----IAGGHEVEVVYIPEEGRGTLCVSSQVGCTL 137 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 TCSFC+TGTQKLVRNLTA EI+ QV++AR LG++P + R +SNIV+MG Sbjct: 138 TCSFCHTGTQKLVRNLTAAEIIGQVMVARDDLGEWPVP-----GTLTDAPRLLSNIVLMG 192 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL NF+NV+ ++ IA D G+ S+RRITLSTSG VP IAR EEIG LA+S HA Sbjct: 193 MGEPLYNFENVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAEEIGCQLAVSFHAT 252 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++++R+ LVPIN+++ + LI+A R YP +SN+ RITFEYVML G+NDS DA LI+++ Sbjct: 253 TDEVRDKLVPINKRWNIAELIEALRAYPKVSNSERITFEYVMLDGVNDSDADAHRLIELI 312 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +GIPAKINLIPFN WPG Y S I FSE + ++GY+SP+R PRG DI+AACGQLK Sbjct: 313 RGIPAKINLIPFNEWPGAPYKRSSNNRIRAFSEIVYQAGYASPVRKPRGEDIMAACGQLK 372 Query: 367 SLSKRIPKVPRQEMQITG 384 S ++R K +Q G Sbjct: 373 SATERERKSRKQIEADAG 390 >gi|163745013|ref|ZP_02152373.1| hypothetical protein OIHEL45_05480 [Oceanibulbus indolifex HEL-45] gi|161381831|gb|EDQ06240.1| hypothetical protein OIHEL45_05480 [Oceanibulbus indolifex HEL-45] Length = 393 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 199/378 (52%), Positives = 265/378 (70%), Gaps = 10/378 (2%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+G+ R+ + + L+ G P++ +MR QIW+WIY G+RDF M+++++ R L + Sbjct: 23 VNLVGLTRDAMRDVLIANGTPEKQAKMRVGQIWQWIYQWGVRDFDSMTNLAKGYRAELAE 82 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 F I PE+V + S DGTRK+L+R I G E+E VYIPE+ RGTLCVSSQVGC+L Sbjct: 83 KFVIEVPEVVTRQESEDGTRKYLVR-----IAGGHEVEVVYIPEEGRGTLCVSSQVGCTL 137 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 TCSFC+TGTQKLVRNLTA EI+ QV++AR L ++P E R +SNIV+MG Sbjct: 138 TCSFCHTGTQKLVRNLTAAEIIGQVMVARDDLDEWP-----ETGTRTEEARLLSNIVLMG 192 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL NF+NV+ ++ IA D G+ S+RRITLSTSG VP I R EIG LA+S HA Sbjct: 193 MGEPLYNFENVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIHRTAAEIGCQLAVSFHAT 252 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++++RN LVPIN+++ +E L+DA R YP +SN+ RITFEYVMLKG+NDS DA L++++ Sbjct: 253 TDEVRNKLVPINKRWNIEELLDALRAYPKVSNSERITFEYVMLKGVNDSDEDAHRLVELI 312 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 KGIPAKINLIPFN WPG Y S I F++ + +GY+SP+R PRG DI+AACGQLK Sbjct: 313 KGIPAKINLIPFNEWPGSPYERSSNNRIRAFADIVYNAGYASPVRKPRGEDIMAACGQLK 372 Query: 367 SLSKRIPKVPRQEMQITG 384 S ++R K +Q G Sbjct: 373 SATERARKSRKQIEAEAG 390 >gi|77464959|ref|YP_354463.1| radical SAM superfamily protein [Rhodobacter sphaeroides 2.4.1] gi|126460828|ref|YP_001041942.1| radical SAM protein [Rhodobacter sphaeroides ATCC 17029] gi|221640880|ref|YP_002527142.1| Radical SAM enzyme, Cfr family [Rhodobacter sphaeroides KD131] gi|332559858|ref|ZP_08414180.1| Radical SAM enzyme, Cfr family protein [Rhodobacter sphaeroides WS8N] gi|123757738|sp|Q3IY22|RLMN_RHOS4 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829867|sp|A3PFQ4|RLMN_RHOS1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807200|sp|B9KQP1|RLMN_RHOSK RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|77389377|gb|ABA80562.1| radical SAM superfamily protein [Rhodobacter sphaeroides 2.4.1] gi|126102492|gb|ABN75170.1| radical SAM enzyme, Cfr family [Rhodobacter sphaeroides ATCC 17029] gi|221161661|gb|ACM02641.1| Radical SAM enzyme, Cfr family [Rhodobacter sphaeroides KD131] gi|332277570|gb|EGJ22885.1| Radical SAM enzyme, Cfr family protein [Rhodobacter sphaeroides WS8N] Length = 392 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 207/378 (54%), Positives = 276/378 (73%), Gaps = 10/378 (2%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +++G+ REEL AL+ G P+R +MR Q+W+W+Y G+RDF M++++++ R LL + Sbjct: 24 VNIVGLTREELLAALVAAGTPERQAKMRAGQVWQWVYHWGVRDFAQMTNLAKDYRALLAE 83 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 HF+I+ PE+V +IS DGTRK+L+R I G E+ETVYIPE+ RGTLCVSSQVGC+L Sbjct: 84 HFAIVLPEVVTRQISADGTRKYLIR-----IAGGHEVETVYIPEEGRGTLCVSSQVGCTL 138 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 TCSFC+TGTQKLVRNLTA EI+ Q++L R LG++P E R +SN+V+MG Sbjct: 139 TCSFCHTGTQKLVRNLTAAEIVGQLMLVRDDLGEWP-----ERGAPKDETRLVSNLVLMG 193 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL NF+NV+ ++ + D GLS S+RRITLSTSG VP IAR EEIG LAIS HA Sbjct: 194 MGEPLYNFENVRNAMKVVMDGEGLSLSRRRITLSTSGVVPEIARTAEEIGCQLAISFHAT 253 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++++R+ILVPIN+++ + L+D+ R YP LSN+ RITFEYVML G+ND+ DA L+K++ Sbjct: 254 TDEVRDILVPINKRWNIRTLLDSLRDYPRLSNSERITFEYVMLDGVNDTDADARRLVKLI 313 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 GIP+KINLIPFN WPG Y S + I F++ I ++GY+SPIRTPRG DI+AACGQLK Sbjct: 314 SGIPSKINLIPFNEWPGAPYRRSTPERIAAFADIIYKAGYASPIRTPRGEDIMAACGQLK 373 Query: 367 SLSKRIPKVPRQEMQITG 384 S ++R K Q TG Sbjct: 374 SATERARKSRAQIAAETG 391 >gi|110677600|ref|YP_680607.1| hypothetical protein RD1_0192 [Roseobacter denitrificans OCh 114] gi|123066012|sp|Q16DM2|RLMN_ROSDO RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|109453716|gb|ABG29921.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114] Length = 394 Score = 487 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 203/378 (53%), Positives = 270/378 (71%), Gaps = 10/378 (2%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+G+ R + +AL+ G P++ +MR QIW+WIY G+RDF M+++S+ R L + Sbjct: 23 VNLVGLTRAAMRDALIAEGTPEKQAKMRVGQIWQWIYQWGVRDFDLMTNLSKAYRAQLKE 82 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 F + PE+V ++S DGTRK+L+R I G E+E VYIP++ RGTLCVSSQVGC+L Sbjct: 83 KFVVEVPEVVTRQVSEDGTRKYLVR-----IAGGHEVEVVYIPDEGRGTLCVSSQVGCTL 137 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 TCSFC+TGTQKLVRNLTA EI+ QV++AR LG++P E R +SNIV+MG Sbjct: 138 TCSFCHTGTQKLVRNLTAAEIIGQVMVARDDLGEWP-----EIGAPKDETRLLSNIVLMG 192 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL NF+NV+ ++ IA D G+ S+RRITLSTSG VP IAR EIG LA+S HA Sbjct: 193 MGEPLYNFENVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAVEIGCQLAVSFHAT 252 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++D+R+ LVPIN+++ +E+L++A R YP +SN+ RITFEYVML G+NDS DA L+K++ Sbjct: 253 TDDVRDTLVPINKRWNIEVLLEALRAYPKVSNSERITFEYVMLHGVNDSDEDARRLVKLI 312 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 GIPAKINLIPFN WPG Y S I F++ I ++GY+SPIRTPRG DI+AACGQLK Sbjct: 313 DGIPAKINLIPFNEWPGAPYKRSSNNRIRAFADIIYKAGYASPIRTPRGEDIMAACGQLK 372 Query: 367 SLSKRIPKVPRQEMQITG 384 S ++R K +Q TG Sbjct: 373 SATERARKSRKQIAAETG 390 >gi|154251833|ref|YP_001412657.1| radical SAM protein [Parvibaculum lavamentivorans DS-1] gi|205829796|sp|A7HSW7|RLMN_PARL1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|154155783|gb|ABS63000.1| radical SAM enzyme, Cfr family [Parvibaculum lavamentivorans DS-1] Length = 399 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 223/380 (58%), Positives = 275/380 (72%), Gaps = 7/380 (1%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + L G+ R L +AL G+P +RMR QIW +Y RG DF+ M+ +S+E+R L Sbjct: 21 RPHLAGLTRPLLMDALKAFGLPDNQLRMRAGQIWNGLYNRGFTDFERMTTLSKELRGKLA 80 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIG-GPVEIETVYIPEKSRGTLCVSSQVGC 124 F I EIV E+ S DGTRKWLLR P+ G E+ETVYIPE+ RGTLCVSSQVGC Sbjct: 81 DAFDISRLEIVTEQKSVDGTRKWLLRLPSGIPGVPGPEVETVYIPEEGRGTLCVSSQVGC 140 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +LTC+FC+TGTQKLVRNLTA EI+ Q+LLAR LG++P S R I+NIVM Sbjct: 141 TLTCTFCHTGTQKLVRNLTAGEIVGQILLARDALGEWPDG------GRNSEDRLITNIVM 194 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NF+NV+ +L + SD GLS SKRRITLSTSG VP I R GEEIG MLAISLH Sbjct: 195 MGMGEPLYNFENVRDALEVVSDGEGLSLSKRRITLSTSGVVPMIERAGEEIGCMLAISLH 254 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV ++ RN LVP+N+KYP+ L++ACR+YPG+SNARRITFEYVMLKG+NDS DA L++ Sbjct: 255 AVDDETRNRLVPLNKKYPIAELLEACRNYPGVSNARRITFEYVMLKGVNDSLEDAKALVR 314 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK IPAKINLIPFNPWPG Y CSD + I F++ + R+GY+SP+RTPRG DI+AACGQ Sbjct: 315 LLKHIPAKINLIPFNPWPGSPYECSDWEQIEKFADVVNRAGYASPVRTPRGRDIMAACGQ 374 Query: 365 LKSLSKRIPKVPRQEMQITG 384 LKS + + R + + Sbjct: 375 LKSETVKARASERFKGEKAA 394 >gi|27375636|ref|NP_767165.1| hypothetical protein bll0525 [Bradyrhizobium japonicum USDA 110] gi|81740269|sp|Q89X03|RLMN_BRAJA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|27348773|dbj|BAC45790.1| bll0525 [Bradyrhizobium japonicum USDA 110] Length = 400 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 228/377 (60%), Positives = 279/377 (74%), Gaps = 9/377 (2%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIG+ R EL + L +IG+ +MR Q+W W+Y RG ++F M+ IS+ +R L Sbjct: 26 KPSLIGLSRNELADRLGEIGVAPAQRKMRVQQLWHWMYFRGAQNFDEMTSISKGIRAELA 85 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPAR-CIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 QHF++ PE+V E+IS DGTRKWLLR P+ + E+E VYIPE RGTLCVSSQVGC Sbjct: 86 QHFTVDRPEVVAEQISNDGTRKWLLRLPSGDNVEKAHEVECVYIPETDRGTLCVSSQVGC 145 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L CSFC+TGTQ+LVRNLTA EI+ QV++AR L D+ ED R+++NIVM Sbjct: 146 TLNCSFCHTGTQRLVRNLTAGEIVGQVMVARDRLNDWADRED--------GTRRVTNIVM 197 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFD V+ +L I D+ G+ S+RRITLSTSG VPNI R GEEIGVMLAISLH Sbjct: 198 MGMGEPLYNFDAVRDALLIVGDNEGIGISRRRITLSTSGVVPNIVRAGEEIGVMLAISLH 257 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV ++LRN LVP+NRKYP++ L+ ACR YPG SNARRITFEYVMLKG+NDS DA L+K Sbjct: 258 AVRDELRNELVPLNRKYPIKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDAKLLVK 317 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGI AKINLIPFNPWPG Y CSD I FSE I +GYSSP+RTPRG DILAACGQ Sbjct: 318 LLKGIHAKINLIPFNPWPGTAYECSDWDQIEKFSEYIFNAGYSSPVRTPRGRDILAACGQ 377 Query: 365 LKSLSKRIPKVPRQEMQ 381 LKS ++++ RQ ++ Sbjct: 378 LKSETEKLSARERQTLR 394 >gi|83941897|ref|ZP_00954359.1| radical SAM enzyme, Cfr family protein [Sulfitobacter sp. EE-36] gi|83847717|gb|EAP85592.1| radical SAM enzyme, Cfr family protein [Sulfitobacter sp. EE-36] Length = 391 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 203/378 (53%), Positives = 267/378 (70%), Gaps = 10/378 (2%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+G+ R+ + AL+ G P++ +MR QIW+WIY G RDF M+++S+ R L + Sbjct: 23 VNLVGLTRDAMRAALIAEGTPEKQAKMRVGQIWQWIYQWGTRDFADMTNLSKAFRAELAE 82 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 F I PE+V +++S DGTRK+L+R I G E+E VYIPE+ RGTLCVSSQVGC+L Sbjct: 83 KFVIEVPEVVTKQVSEDGTRKYLVR-----IAGGHEVEVVYIPEEGRGTLCVSSQVGCTL 137 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 TCSFC+TGTQKLVRNLTA EI+ QV++AR LG++P + R +SNIV+MG Sbjct: 138 TCSFCHTGTQKLVRNLTAAEIIGQVMVARDDLGEWPVP-----GTLTDAPRLLSNIVLMG 192 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL NF+NV+ ++ IA D G+ S+RRITLSTSG VP IAR EEIG LA+S HA Sbjct: 193 MGEPLYNFENVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAEEIGCQLAVSFHAT 252 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++++RN LVPIN+++ + LI A R YP +SN+ RITFEYVML G+NDS DA LI+++ Sbjct: 253 TDEVRNKLVPINKRWNIAELIKALRAYPKVSNSERITFEYVMLDGVNDSDADAHRLIELI 312 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +GIPAKINLIPFN WPG Y S I FSE + ++GY+SP+R PRG DI+AACGQLK Sbjct: 313 RGIPAKINLIPFNEWPGAPYKRSSNNRIRAFSEIVYQAGYASPVRKPRGEDIMAACGQLK 372 Query: 367 SLSKRIPKVPRQEMQITG 384 S ++R K +Q G Sbjct: 373 SATERERKSRKQIEADAG 390 >gi|254486932|ref|ZP_05100137.1| radical SAM enzyme, Cfr family [Roseobacter sp. GAI101] gi|214043801|gb|EEB84439.1| radical SAM enzyme, Cfr family [Roseobacter sp. GAI101] Length = 391 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 203/377 (53%), Positives = 266/377 (70%), Gaps = 10/377 (2%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L+G+ R+ + E L+ G P++ +MR QIW+WIY G RDF M+++S+ R L + Sbjct: 24 NLVGLTRDAMREVLIAQGTPEKQAKMRVGQIWQWIYQWGTRDFAEMTNLSKAFRAELAEK 83 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F I PE+V +++S DGTRK+L+R I G E+E VYIPE RGTLCVSSQVGC+LT Sbjct: 84 FVIEVPEVVTKQVSEDGTRKYLVR-----IAGGHEVEVVYIPEDGRGTLCVSSQVGCTLT 138 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 CSFC+TGTQKLVRNLTA EI+ QV++AR L ++P I R +SNIV+MGM Sbjct: 139 CSFCHTGTQKLVRNLTAAEIIGQVMVARDDLDEWPVPGTIT-----EAPRLLSNIVLMGM 193 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL NF+NV+ ++ IA D G+ S+RRITLSTSG VP IAR EEIG LA+S HA + Sbjct: 194 GEPLYNFENVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAEEIGCQLAVSFHATT 253 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 +++R+ LVPIN+++ + LI+A R YP +SN+ RITFEYVML G+NDS DA LI++++ Sbjct: 254 DEVRDKLVPINKRWNIAELIEALRSYPKVSNSERITFEYVMLNGVNDSDADAYRLIELIR 313 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 GIPAKINLIPFN WPG Y S I FSE I ++GY+SP+R PRG DI+AACGQLKS Sbjct: 314 GIPAKINLIPFNEWPGAPYTRSSNNRIRAFSEIIYKAGYASPVRKPRGEDIMAACGQLKS 373 Query: 368 LSKRIPKVPRQEMQITG 384 ++R K +Q G Sbjct: 374 ATERARKSRKQIEADAG 390 >gi|146276099|ref|YP_001166258.1| radical SAM protein [Rhodobacter sphaeroides ATCC 17025] gi|205829868|sp|A4WNI9|RLMN_RHOS5 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|145554340|gb|ABP68953.1| radical SAM enzyme, Cfr family [Rhodobacter sphaeroides ATCC 17025] Length = 392 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 211/377 (55%), Positives = 276/377 (73%), Gaps = 10/377 (2%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +++G+ REEL AL+ G P+R RMR Q+W+W+Y G+RDF M++++++ R LL +H Sbjct: 25 NIVGLTREELMAALVAAGTPERQARMRMGQVWQWVYHWGVRDFAQMTNLAKDYRALLAEH 84 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F+I+ PE+V +IS DGTRK+L+R I G E+ETVYIPE+ RGTLCVSSQVGC+LT Sbjct: 85 FAIVLPEVVTRQISADGTRKYLIR-----IAGGHEVETVYIPEEGRGTLCVSSQVGCTLT 139 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 CSFC+TGTQKLVRNLTA EI+ QV+L R LG++P E R +SN+V+MGM Sbjct: 140 CSFCHTGTQKLVRNLTAGEIVGQVMLVRDDLGEWP-----ERGAPKDETRLVSNLVLMGM 194 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL NF+NV+ ++ + D GLS S+RRITLSTSG VP IAR EEIG LAIS HA + Sbjct: 195 GEPLYNFENVRNAMKVVMDGEGLSLSRRRITLSTSGVVPEIARTAEEIGCQLAISFHATT 254 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 +++R+ILVPIN+++ + L+D+ R YP LSN+ RITFEYVML GINDS DA L+K++ Sbjct: 255 DEVRDILVPINKRWNIRTLLDSLRDYPRLSNSERITFEYVMLDGINDSDADARRLVKLIS 314 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 GIP+KINLIPFN WPG Y S + I F++ I ++GY+SPIRTPRG DI+AACGQLKS Sbjct: 315 GIPSKINLIPFNEWPGAPYRRSTPERIAAFADIIYKAGYASPIRTPRGEDIMAACGQLKS 374 Query: 368 LSKRIPKVPRQEMQITG 384 ++R K Q TG Sbjct: 375 ATERARKSRAQIAAETG 391 >gi|205829854|sp|B1M1U6|RLMN_METRJ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase Length = 424 Score = 485 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 214/384 (55%), Positives = 274/384 (71%), Gaps = 5/384 (1%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 ++ SL+G+ R+ L+ L+ +G+P+R RMR Q+W W+ RG DF M+++ + ++ L Sbjct: 30 RRPSLVGLTRDALKAQLIGMGVPERESRMRAGQVWHWVNFRGASDFAEMTNVGKALKAQL 89 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPA---RCIGGPVEIETVYIPEKSRGTLCVSSQ 121 +HF++ PE+ ++S DGTRKWLLR + EIE VYIP RGTLCVSSQ Sbjct: 90 AEHFTLERPEVASRQVSRDGTRKWLLRMAPTNRQEHNRGAEIECVYIPGPDRGTLCVSSQ 149 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC-EDIEGMVIPSVGRKIS 180 VGC+LTCSFC+TGTQ+LVRNL+A EI+ Q++ AR LGD+PG + VGR ++ Sbjct: 150 VGCTLTCSFCHTGTQRLVRNLSAAEIVQQLVTARDELGDWPGQMPSRDAGGSGEVGRLVT 209 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 NIV MGMGEPL N D V ++ + SD GL S+RRIT+STSG VP I R+GE+ MLA Sbjct: 210 NIVFMGMGEPLYNLDAVVDAVGVMSDQEGLGLSRRRITVSTSGVVPQIPRLGEQANAMLA 269 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ISLHAV +DLR+ LVP+NRKYP+ L+ ACR YPGLSNARRITFEYVMLKG+NDS DA Sbjct: 270 ISLHAVRDDLRDELVPLNRKYPIAELLAACRAYPGLSNARRITFEYVMLKGVNDSDADAR 329 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L+++LKGIPAKINLIPFNPWPG Y CSD I FSE + +GY+SP+RTPRG DILA Sbjct: 330 ELVRLLKGIPAKINLIPFNPWPGSRYECSDWDRIERFSEIVFNAGYASPVRTPRGRDILA 389 Query: 361 ACGQLKSLSKRIPKVPRQEMQITG 384 ACGQLKS ++++ R MQ G Sbjct: 390 ACGQLKSETEKLRARARL-MQEEG 412 >gi|260432258|ref|ZP_05786229.1| radical SAM enzyme, Cfr family [Silicibacter lacuscaerulensis ITI-1157] gi|260416086|gb|EEX09345.1| radical SAM enzyme, Cfr family [Silicibacter lacuscaerulensis ITI-1157] Length = 395 Score = 485 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 204/381 (53%), Positives = 267/381 (70%), Gaps = 12/381 (3%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ R+ L E L++ G P++ +MR +QIW+WIY G+RDF M+++++ R L Sbjct: 22 KINLVGLTRDRLREVLIEHGTPEKQAKMRVNQIWQWIYQWGVRDFDQMTNLAKAYRAQLA 81 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +HF I PE+V +IS DGTRK+L+R I G E+E VYIPE+ RGTLC+SSQVGC+ Sbjct: 82 EHFVIEIPEVVTRQISSDGTRKYLVR-----IAGGHEVEVVYIPEEDRGTLCISSQVGCT 136 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLTA EI+ QV++AR L ++P + R +SNIV+M Sbjct: 137 LTCSFCHTGTQKLVRNLTAAEIIGQVMMARDDLDEWPTPGAPKNET-----RLLSNIVLM 191 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+NV+ ++ IA D G+S S+RRITLSTSG VP IAR EEIG +LAIS HA Sbjct: 192 GMGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCLLAISFHA 251 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++R++LVPIN+++ +E L+ A YP SN+ RITFEYVML G+NDS DA LI Sbjct: 252 TTDEVRDVLVPINKRWNIEELLQALASYPNASNSERITFEYVMLDGVNDSDEDAHRLIDH 311 Query: 306 LK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +K IPAKINLIPFN WPG Y S I F+ I ++GY+SPIR RG DI+AACG Sbjct: 312 IKRHNIPAKINLIPFNEWPGAPYKRSSNNRIRAFANIIYQAGYASPIRKTRGEDIMAACG 371 Query: 364 QLKSLSKRIPKVPRQEMQITG 384 QLKS ++R K RQ G Sbjct: 372 QLKSATERARKSRRQIEAEAG 392 >gi|85706112|ref|ZP_01037207.1| radical SAM superfamily protein [Roseovarius sp. 217] gi|85669276|gb|EAQ24142.1| radical SAM superfamily protein [Roseovarius sp. 217] Length = 392 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 206/378 (54%), Positives = 273/378 (72%), Gaps = 9/378 (2%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+G+ R+ L EAL+ G P++ +MR +QIW+WIY G+RDF M+++++ R L + Sbjct: 23 VNLVGLTRDALREALIAHGTPEKQAKMRVNQIWQWIYQWGVRDFHAMTNLAKAYRAQLAE 82 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 +F + PE+V +++S DGTRK+L+R I G E+E VYIPE RGTLC+SSQVGC+L Sbjct: 83 NFVVTIPEVVSKQVSTDGTRKYLVR-----IAGGHEVEVVYIPETDRGTLCISSQVGCTL 137 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 TCSFC+TGTQKLVRNLTA EI+ QV+LAR L ++P + G R ISNIV+MG Sbjct: 138 TCSFCHTGTQKLVRNLTAGEIIGQVMLARDDLNEWPRPGEPVG----ERPRLISNIVLMG 193 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL NFDNV+ ++ IA D G+S S+RRITLSTSG VP IA+ +EIG +LA+S HA Sbjct: 194 MGEPLYNFDNVRDAMKIAMDGEGISLSRRRITLSTSGVVPEIAKTAQEIGCLLAVSFHAT 253 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ +R+ LVPIN+K+ + L+D R YP LSN+ RITFEYVMLK +NDS DA L++++ Sbjct: 254 TDAVRDALVPINKKWNIATLLDTLRDYPRLSNSERITFEYVMLKDVNDSDADARRLVQLI 313 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 KGIPAKINLIPFN WPG Y SD+ I F++ I ++GY+SPIRTPRG DI+AACGQLK Sbjct: 314 KGIPAKINLIPFNEWPGSPYERSDRDRIQRFADIIYKAGYASPIRTPRGEDIMAACGQLK 373 Query: 367 SLSKRIPKVPRQEMQITG 384 S ++R K Q G Sbjct: 374 SATERARKSRAQIEAEAG 391 >gi|254439770|ref|ZP_05053264.1| radical SAM enzyme, Cfr family [Octadecabacter antarcticus 307] gi|198255216|gb|EDY79530.1| radical SAM enzyme, Cfr family [Octadecabacter antarcticus 307] Length = 394 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 203/377 (53%), Positives = 275/377 (72%), Gaps = 8/377 (2%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +++G+ R++L +AL+ +G+ ++ +MR +Q+W+W+Y G+RDF+ M+++S++ R L +H Sbjct: 25 NIVGLTRDQLRDALIGVGVTEKQAKMRVNQVWQWLYHWGVRDFEVMTNLSKDFRTTLAEH 84 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 F I PE+V + +S DGTRK+L+R I G E+E VYIPEK RGTLC+SSQVGC+LT Sbjct: 85 FKIELPEVVTKDVSTDGTRKYLVR-----IAGGHEVEVVYIPEKDRGTLCISSQVGCTLT 139 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 CSFC+TGTQKLVRNLTA EI+ QV+LAR L ++P G P R +SNIV+MGM Sbjct: 140 CSFCHTGTQKLVRNLTAGEIIGQVMLARDDLNEWPEPGQGTGENGP---RLLSNIVLMGM 196 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL NF+NV+ ++ IA D G++ S+RRITLSTSG VP I R +EIG MLAIS H + Sbjct: 197 GEPLYNFENVRDAMKIAMDGEGIALSRRRITLSTSGVVPEIHRTADEIGCMLAISFHGTT 256 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 +++R+ LVPIN+K+ LE L++A YP +SN+ RITFEYVMLK +NDS DA L+K+++ Sbjct: 257 DEIRDKLVPINKKWNLEKLLEALAAYPKVSNSERITFEYVMLKDVNDSDEDARRLVKLIE 316 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 GIPAKINLIPFN WPG Y SD I F++ I +GY+SPIR PRG DI+AACGQLKS Sbjct: 317 GIPAKINLIPFNEWPGAPYKRSDADRIKAFADIIYNAGYASPIRRPRGEDIMAACGQLKS 376 Query: 368 LSKRIPKVPRQEMQITG 384 ++R K +Q G Sbjct: 377 ATERSRKSRKQIDAEAG 393 >gi|170747554|ref|YP_001753814.1| radical SAM protein [Methylobacterium radiotolerans JCM 2831] gi|170654076|gb|ACB23131.1| radical SAM enzyme, Cfr family [Methylobacterium radiotolerans JCM 2831] Length = 430 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 214/384 (55%), Positives = 274/384 (71%), Gaps = 5/384 (1%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 ++ SL+G+ R+ L+ L+ +G+P+R RMR Q+W W+ RG DF M+++ + ++ L Sbjct: 36 RRPSLVGLTRDALKAQLIGMGVPERESRMRAGQVWHWVNFRGASDFAEMTNVGKALKAQL 95 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPA---RCIGGPVEIETVYIPEKSRGTLCVSSQ 121 +HF++ PE+ ++S DGTRKWLLR + EIE VYIP RGTLCVSSQ Sbjct: 96 AEHFTLERPEVASRQVSRDGTRKWLLRMAPTNRQEHNRGAEIECVYIPGPDRGTLCVSSQ 155 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC-EDIEGMVIPSVGRKIS 180 VGC+LTCSFC+TGTQ+LVRNL+A EI+ Q++ AR LGD+PG + VGR ++ Sbjct: 156 VGCTLTCSFCHTGTQRLVRNLSAAEIVQQLVTARDELGDWPGQMPSRDAGGSGEVGRLVT 215 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 NIV MGMGEPL N D V ++ + SD GL S+RRIT+STSG VP I R+GE+ MLA Sbjct: 216 NIVFMGMGEPLYNLDAVVDAVGVMSDQEGLGLSRRRITVSTSGVVPQIPRLGEQANAMLA 275 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ISLHAV +DLR+ LVP+NRKYP+ L+ ACR YPGLSNARRITFEYVMLKG+NDS DA Sbjct: 276 ISLHAVRDDLRDELVPLNRKYPIAELLAACRAYPGLSNARRITFEYVMLKGVNDSDADAR 335 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L+++LKGIPAKINLIPFNPWPG Y CSD I FSE + +GY+SP+RTPRG DILA Sbjct: 336 ELVRLLKGIPAKINLIPFNPWPGSRYECSDWDRIERFSEIVFNAGYASPVRTPRGRDILA 395 Query: 361 ACGQLKSLSKRIPKVPRQEMQITG 384 ACGQLKS ++++ R MQ G Sbjct: 396 ACGQLKSETEKLRARARL-MQEEG 418 >gi|159045851|ref|YP_001534645.1| radical SAM enzyme [Dinoroseobacter shibae DFL 12] gi|157913611|gb|ABV95044.1| radical SAM enzyme [Dinoroseobacter shibae DFL 12] Length = 406 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 211/379 (55%), Positives = 275/379 (72%), Gaps = 9/379 (2%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ R EL EAL G P++ V+MR +QIW+W+Y RG+RDF M+++++ R LL Sbjct: 35 KRNLVGLTRPELAEALAAAGTPEKQVKMRVNQIWQWLYERGVRDFNDMTNLAKPYRALLA 94 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F I PE+V +S DGTRK+L+R I G E+E VYIPE+ RGTLCVSSQVGC+ Sbjct: 95 DQFEIAVPEVVSRHVSEDGTRKYLVR-----IAGGHEVEVVYIPEEDRGTLCVSSQVGCT 149 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLTA EI+ Q+++AR LG++P + G + R +SNIV+M Sbjct: 150 LTCSFCHTGTQKLVRNLTAGEIVGQIMIARDDLGEWP----LPGRNPKNETRLLSNIVLM 205 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+ V+ ++ IA D G+S S+RRITLSTSG VP IAR EEIG MLA+S HA Sbjct: 206 GMGEPLYNFEAVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCMLAVSFHA 265 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++R+ LVPIN+++ + L+DA R YP SN+ RITFEYVMLKG+NDS DA L+++ Sbjct: 266 TTDEVRDKLVPINKRWNIATLLDALRDYPKASNSERITFEYVMLKGVNDSDEDARRLVEL 325 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +KGIPAKINLIPFN WPG Y S I F++ I ++GY+SPIRTPRG DI+AACGQL Sbjct: 326 IKGIPAKINLIPFNEWPGAPYERSSNNRIRAFADIIYKAGYASPIRTPRGEDIMAACGQL 385 Query: 366 KSLSKRIPKVPRQEMQITG 384 KS ++R K Q TG Sbjct: 386 KSATERARKSRAQIAAETG 404 >gi|149913266|ref|ZP_01901800.1| hypothetical protein RAZWK3B_04720 [Roseobacter sp. AzwK-3b] gi|149813672|gb|EDM73498.1| hypothetical protein RAZWK3B_04720 [Roseobacter sp. AzwK-3b] Length = 382 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 204/378 (53%), Positives = 275/378 (72%), Gaps = 9/378 (2%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+G+ R+ L E L++ G P++ +MR +QIW+W+Y G+RDF M+++S+ R +L + Sbjct: 12 TNLVGLTRDRLREVLIEAGTPEKQAKMRVNQIWQWLYQWGVRDFHAMTNLSKTYRQMLAE 71 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 +F I PE+V +++S DGTRK+L+R I G E+E VYIPE RGTLC+SSQVGC+L Sbjct: 72 NFVIEIPEMVSKQVSADGTRKYLVR-----IAGGHEVEVVYIPETDRGTLCISSQVGCTL 126 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 TCSFC+TGTQKLVRNL+A EI+ QV++AR L ++P G R +SNIV+MG Sbjct: 127 TCSFCHTGTQKLVRNLSAGEIVGQVMMARDDLDEWPRP----GEGAGERPRLLSNIVLMG 182 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL NFDNV+ ++ IA D G+S S+RRITLSTSG VP IA+ EEIG MLA+S HA Sbjct: 183 MGEPLYNFDNVRDAMKIAMDGEGISLSRRRITLSTSGVVPEIAKTAEEIGCMLAVSFHAT 242 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++++R+ LVPIN+K+ +E L+ A R YP LSN+ RITFEYVMLK +NDS DA L++++ Sbjct: 243 TDEVRDKLVPINKKWNIETLLGALREYPRLSNSERITFEYVMLKDVNDSDADARRLVQLI 302 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 KGIPAKINLIPFN WPG + SD I F++ + ++GY+SPIRTPRG DI+AACGQLK Sbjct: 303 KGIPAKINLIPFNEWPGAPHQRSDWDRIEKFADIVYKAGYASPIRTPRGEDIMAACGQLK 362 Query: 367 SLSKRIPKVPRQEMQITG 384 S ++R K +Q G Sbjct: 363 SATERARKSRKQIESEAG 380 >gi|75676990|ref|YP_319411.1| hypothetical protein Nwi_2806 [Nitrobacter winogradskyi Nb-255] gi|74421860|gb|ABA06059.1| 23S rRNA m(2)A-2503 methyltransferase [Nitrobacter winogradskyi Nb-255] Length = 427 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 226/377 (59%), Positives = 277/377 (73%), Gaps = 7/377 (1%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIG+ R E+ E L IGIP+ RMR Q+W W+YVRG R F M+ +S+++R L Sbjct: 51 KPSLIGLSRAEMAERLAAIGIPREQRRMRVQQLWHWMYVRGARTFAEMTSVSKDMRAELE 110 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARC-IGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +H ++ PE+V E+IS DGTRKWLLR P+ + P E+E VYIPE RGTLCVSSQVGC Sbjct: 111 KHVTLDRPEVVAEQISSDGTRKWLLRLPSGDDLEKPHEVECVYIPETDRGTLCVSSQVGC 170 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L CSFC+TGTQ+LVRNLTA EI+ Q+++AR L D+ E P R ++NIVM Sbjct: 171 TLNCSFCHTGTQRLVRNLTAGEIVGQIMVARDRLNDWADRET------PHGNRLVTNIVM 224 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFD V+ L I +D+ G+ SKRRITLSTSG VPNI R GEEIGVMLAISLH Sbjct: 225 MGMGEPLYNFDAVRDGLLIVADNEGIGISKRRITLSTSGVVPNIVRAGEEIGVMLAISLH 284 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV ++LR+ LVP+NRKYP+ L+ ACR YP SNA+RITFEYVMLKG+NDS DA L+K Sbjct: 285 AVRDELRDELVPLNRKYPIAELMQACRDYPAASNAKRITFEYVMLKGVNDSLDDARRLVK 344 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L GI AKINLIPFNPWPG Y CSD I FSE + +GYSSP+RTPRG DILAACGQ Sbjct: 345 LLNGIHAKINLIPFNPWPGTRYECSDWDQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 404 Query: 365 LKSLSKRIPKVPRQEMQ 381 LKS ++++ RQ ++ Sbjct: 405 LKSETEKLSARERQALR 421 >gi|114762064|ref|ZP_01441532.1| radical SAM superfamily protein [Pelagibaca bermudensis HTCC2601] gi|114545088|gb|EAU48091.1| radical SAM superfamily protein [Roseovarius sp. HTCC2601] Length = 398 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 208/379 (54%), Positives = 280/379 (73%), Gaps = 8/379 (2%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ RE L AL+++G P++ +MR +QIW+W+Y G+RDF M+++++E R L+ Sbjct: 23 KLNLVGLTREALRAALIEMGTPEKQAKMRVNQIWQWVYHWGVRDFAEMTNLAKEYRAKLD 82 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 HF I+ PEIV + +S DGTRK+L+R I G E+E VYIPE+ RGTLC+SSQVGC+ Sbjct: 83 AHFEILLPEIVSKNVSVDGTRKYLVR-----IAGGHEVEVVYIPEEGRGTLCISSQVGCT 137 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLTA EI+ Q++LAR L ++P G P R +SNIV+M Sbjct: 138 LTCSFCHTGTQKLVRNLTAGEIVGQIMLARDDLDEWPEPGTGTGEGGP---RLLSNIVLM 194 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV+ ++ IA D G++ S+RRITLSTSG VP IA+ +EIG ++A+S HA Sbjct: 195 GMGEPLYNFDNVRDAMKIAMDGEGIALSRRRITLSTSGVVPEIAKCAKEIGCLMAVSFHA 254 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++RN LVPIN+++ +E L++A R YP LSN+ RITFEYVMLK +NDS DA L+ + Sbjct: 255 TTDEVRNKLVPINKRWNIETLLNALREYPRLSNSERITFEYVMLKDVNDSDADARRLVNL 314 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +KGIPAKINLIPFN WPG Y SD + I F++ + ++GY+SPIRTPRG DI+AACGQL Sbjct: 315 IKGIPAKINLIPFNEWPGAPYQRSDWERIERFADIVYKAGYASPIRTPRGEDIMAACGQL 374 Query: 366 KSLSKRIPKVPRQEMQITG 384 KS ++R K Q TG Sbjct: 375 KSATERARKSRAQIAAETG 393 >gi|163733192|ref|ZP_02140636.1| hypothetical protein RLO149_11040 [Roseobacter litoralis Och 149] gi|161393727|gb|EDQ18052.1| hypothetical protein RLO149_11040 [Roseobacter litoralis Och 149] Length = 394 Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 203/378 (53%), Positives = 268/378 (70%), Gaps = 10/378 (2%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+G+ R + + L+ G P++ +MR QIW+WIY G+RDF M+++S+ R L + Sbjct: 23 VNLVGLTRAAMRDVLIAEGTPEKQAKMRVGQIWQWIYQWGVRDFDLMTNLSKAYRAELKE 82 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 F + PE+V ++S DGTRK+L+R I G E+E VYIPE RGTLCVSSQVGC+L Sbjct: 83 KFVVEVPEVVTRQVSEDGTRKYLVR-----IAGGHEVEVVYIPEDGRGTLCVSSQVGCTL 137 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 TCSFC+TGTQKLVRNLTA EI+ QV++AR LG++P E R +SNIV+MG Sbjct: 138 TCSFCHTGTQKLVRNLTAAEIIGQVIIARDDLGEWP-----EIGAPKDETRLLSNIVLMG 192 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL NF+NV+ ++ IA D G+ S+RRITLSTSG VP IAR EIG LAIS HA Sbjct: 193 MGEPLYNFENVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAVEIGCQLAISFHAT 252 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++D+R+ LVPIN+++ +E+L++A R YP +SN+ RITFEYVML G+NDS DA L+K++ Sbjct: 253 TDDVRDKLVPINKRWNIEVLLEALRVYPKVSNSERITFEYVMLHGVNDSDEDARRLVKLI 312 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +GIPAKINLIPFN WPG Y S I F++ I ++GY+SPIRTPRG DI+AACGQLK Sbjct: 313 EGIPAKINLIPFNEWPGAPYKRSSNNRIRAFADIIYKAGYASPIRTPRGEDIMAACGQLK 372 Query: 367 SLSKRIPKVPRQEMQITG 384 S ++R K +Q G Sbjct: 373 SATERARKSRKQIAAEAG 390 >gi|205829860|sp|A8LNF0|RLMN_DINSH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase Length = 394 Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 211/379 (55%), Positives = 275/379 (72%), Gaps = 9/379 (2%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ R EL EAL G P++ V+MR +QIW+W+Y RG+RDF M+++++ R LL Sbjct: 23 KRNLVGLTRPELAEALAAAGTPEKQVKMRVNQIWQWLYERGVRDFNDMTNLAKPYRALLA 82 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F I PE+V +S DGTRK+L+R I G E+E VYIPE+ RGTLCVSSQVGC+ Sbjct: 83 DQFEIAVPEVVSRHVSEDGTRKYLVR-----IAGGHEVEVVYIPEEDRGTLCVSSQVGCT 137 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLTA EI+ Q+++AR LG++P + G + R +SNIV+M Sbjct: 138 LTCSFCHTGTQKLVRNLTAGEIVGQIMIARDDLGEWP----LPGRNPKNETRLLSNIVLM 193 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+ V+ ++ IA D G+S S+RRITLSTSG VP IAR EEIG MLA+S HA Sbjct: 194 GMGEPLYNFEAVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCMLAVSFHA 253 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++R+ LVPIN+++ + L+DA R YP SN+ RITFEYVMLKG+NDS DA L+++ Sbjct: 254 TTDEVRDKLVPINKRWNIATLLDALRDYPKASNSERITFEYVMLKGVNDSDEDARRLVEL 313 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +KGIPAKINLIPFN WPG Y S I F++ I ++GY+SPIRTPRG DI+AACGQL Sbjct: 314 IKGIPAKINLIPFNEWPGAPYERSSNNRIRAFADIIYKAGYASPIRTPRGEDIMAACGQL 373 Query: 366 KSLSKRIPKVPRQEMQITG 384 KS ++R K Q TG Sbjct: 374 KSATERARKSRAQIAAETG 392 >gi|92119085|ref|YP_578814.1| hypothetical protein Nham_3626 [Nitrobacter hamburgensis X14] gi|123386907|sp|Q1QHE3|RLMN_NITHX RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|91801979|gb|ABE64354.1| 23S rRNA m(2)A-2503 methyltransferase [Nitrobacter hamburgensis X14] Length = 397 Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 224/377 (59%), Positives = 278/377 (73%), Gaps = 7/377 (1%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIG+ R E+ E L IG+ RMR Q+W W+YVRG + M+++S+++R L Sbjct: 21 KPSLIGLSRAEISERLAAIGVAPAQRRMRVQQLWHWMYVRGAKTVGEMTNVSKDMRAELE 80 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARC-IGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +H ++ PE+V E+IS DGTRKWLLR P+ + P E+E VYIPE RGTLCVSSQVGC Sbjct: 81 KHVTVDRPEVVAEQISNDGTRKWLLRLPSGNTLEKPHEVECVYIPETDRGTLCVSSQVGC 140 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L CSFC+TGTQ+LVRNLTA EI+ Q+++AR L D+ E P R ++NIVM Sbjct: 141 TLNCSFCHTGTQRLVRNLTAGEIVGQIMVARDRLNDWADRET------PHGNRLVTNIVM 194 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFD V+ +L I +D+ G+ SKRRITLSTSG VPNI R GEEIGVMLAISLH Sbjct: 195 MGMGEPLYNFDAVRDALLIVADNEGIGISKRRITLSTSGVVPNIVRTGEEIGVMLAISLH 254 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV ++LRN LVP+NRKYP+ L+ ACR YP SNA+RITFEYVMLKG+NDS DA L+K Sbjct: 255 AVRDELRNELVPLNRKYPIAELMQACRDYPAASNAKRITFEYVMLKGVNDSLDDAKLLVK 314 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGI AKINLIPFNPWPG Y CSD + I FSE + +GYSSP+RTPRG DILAACGQ Sbjct: 315 LLKGIHAKINLIPFNPWPGTRYECSDWEQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 374 Query: 365 LKSLSKRIPKVPRQEMQ 381 LKS ++++ RQ ++ Sbjct: 375 LKSETEKLSARERQALR 391 >gi|254477449|ref|ZP_05090835.1| radical SAM enzyme, Cfr family [Ruegeria sp. R11] gi|214031692|gb|EEB72527.1| radical SAM enzyme, Cfr family [Ruegeria sp. R11] Length = 396 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 199/381 (52%), Positives = 264/381 (69%), Gaps = 12/381 (3%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ RE++ + L++ G P++ +MR QIW+WIY G RDF+ M+++++ R L Sbjct: 23 KINLVGLTREQMRDVLIENGTPEKQAKMRVGQIWQWIYQWGKRDFEEMTNLAKGYRAQLA 82 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + F I PE+V +++S DGTRK+L+R I G E+E VYIPE RGTLCVSSQVGC+ Sbjct: 83 ETFEISVPEVVSKQVSTDGTRKYLVR-----IAGGHEVEVVYIPEDDRGTLCVSSQVGCT 137 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLT EI+ QV++AR L ++P R +SNIV+M Sbjct: 138 LTCSFCHTGTQKLVRNLTPGEIIGQVMMARDDLEEWPTP-----GAPKDETRLLSNIVLM 192 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+NV+ ++ IA D G+S S+RRITLSTSG VP IAR +EIG +LAIS HA Sbjct: 193 GMGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAQEIGCLLAISFHA 252 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +N++R++LVPIN+++ ++ L+ A YP SN+ RITFEYVML G+NDS DA LI Sbjct: 253 TTNEVRDVLVPINKRWNIDELLQALADYPKASNSERITFEYVMLDGVNDSDEDAHRLIDH 312 Query: 306 LKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +K IPAKINLIPFN WPG Y S I F+ I ++GY+SPIR RG DI+AACG Sbjct: 313 IKRYKIPAKINLIPFNEWPGSPYKRSSNNRIRAFANIIYQAGYASPIRKTRGDDIMAACG 372 Query: 364 QLKSLSKRIPKVPRQEMQITG 384 QLKS ++R K +Q G Sbjct: 373 QLKSATERARKSRKQIEAEAG 393 >gi|89070636|ref|ZP_01157916.1| radical SAM superfamily protein [Oceanicola granulosus HTCC2516] gi|89043783|gb|EAR49985.1| radical SAM superfamily protein [Oceanicola granulosus HTCC2516] Length = 392 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 206/373 (55%), Positives = 273/373 (73%), Gaps = 8/373 (2%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + +L+G+ R L EAL G P + VRMR +Q+W+WIY G+RDF+ M+++++ R LL Sbjct: 23 RTNLVGLTRPALAEALRAAGTPDKQVRMRVNQVWQWIYHWGVRDFEAMTNLAKPYRALLA 82 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++F I PEIV ++S DGTRK+L+R I G E+ETVYIPE+ RGTLC+SSQVGC+ Sbjct: 83 ENFEIALPEIVSRQVSNDGTRKYLVR-----IAGGHEVETVYIPEEDRGTLCISSQVGCT 137 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLT EI+ Q++LAR LG++P G P R +SNIV+M Sbjct: 138 LTCSFCHTGTQKLVRNLTPAEIVGQIMLARDDLGEWPAPGTGTGESGP---RLLSNIVLM 194 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFD V+ ++ IA D G++ S+RRITLSTSG V IAR EEIG MLA+S HA Sbjct: 195 GMGEPLYNFDAVRDAMKIAMDGEGIALSRRRITLSTSGVVAEIARCAEEIGCMLAVSFHA 254 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++R+ LVPIN+K+ +E L+++ + YP LSN+ RITFEYVMLK +NDS DA L+K+ Sbjct: 255 TTDEVRDRLVPINKKWNIETLLESLKAYPKLSNSERITFEYVMLKDVNDSDDDARRLVKL 314 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 ++GIPAKINLIPFN WPG Y S I F++ I ++GY+SPIRTPRG DI+AACGQL Sbjct: 315 IEGIPAKINLIPFNEWPGAPYERSSNNRIRAFADIIYKAGYASPIRTPRGEDIMAACGQL 374 Query: 366 KSLSKRIPKVPRQ 378 KS ++R K + Sbjct: 375 KSATERARKSRLE 387 >gi|182677752|ref|YP_001831898.1| radical SAM protein [Beijerinckia indica subsp. indica ATCC 9039] gi|205829669|sp|B2IGZ5|RLMN_BEII9 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|182633635|gb|ACB94409.1| radical SAM enzyme, Cfr family [Beijerinckia indica subsp. indica ATCC 9039] Length = 391 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 222/373 (59%), Positives = 284/373 (76%), Gaps = 2/373 (0%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 SL+G REEL +AL IG+P+R +RMRT+Q+W WIY GIR F M ++ + +R L Sbjct: 14 PSLLGATREELGDALAAIGVPEREIRMRTAQVWHWIYFHGIRSFDTMLNVGKGLRTTLAA 73 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPA-RCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 H+S+ P++V E++S DGTRKWL+R P E+E VYIPE RGTLC+SSQVGC+ Sbjct: 74 HYSLERPQVVSEQVSVDGTRKWLIRLPPVDAQDRGAEVECVYIPESDRGTLCISSQVGCT 133 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISNIVM 184 LTCSFC+TGTQKLVRNL+A EI+ Q+++AR LGDFPG + ++P+ G R I+NIV Sbjct: 134 LTCSFCHTGTQKLVRNLSAREIVSQLVVAREKLGDFPGLVPPKDGLLPTEGNRPITNIVF 193 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV+K++S+ SD GLS S+RRIT+ST+G VP + +G E G MLA+SLH Sbjct: 194 MGMGEPLYNFDNVRKAVSVLSDGEGLSLSRRRITVSTAGVVPQMEALGREAGSMLAVSLH 253 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV +DLR+ LVP+N+KYP++ L++ACR YPG SNARRITFEYVMLK INDSP +A LI+ Sbjct: 254 AVRDDLRDKLVPLNKKYPIKTLLEACRTYPGASNARRITFEYVMLKDINDSPAEARELIR 313 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGIPAKINLIPFNPWPG Y CSD I FS+ + +GY+SP+RTPRG DILAACGQ Sbjct: 314 LLKGIPAKINLIPFNPWPGAPYDCSDWDRIERFSDIVFNAGYASPVRTPRGRDILAACGQ 373 Query: 365 LKSLSKRIPKVPR 377 LKS ++++ R Sbjct: 374 LKSETEKLRARAR 386 >gi|205829850|sp|Q3SNT2|RLMN_NITWN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase Length = 397 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 226/377 (59%), Positives = 277/377 (73%), Gaps = 7/377 (1%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIG+ R E+ E L IGIP+ RMR Q+W W+YVRG R F M+ +S+++R L Sbjct: 21 KPSLIGLSRAEMAERLAAIGIPREQRRMRVQQLWHWMYVRGARTFAEMTSVSKDMRAELE 80 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARC-IGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +H ++ PE+V E+IS DGTRKWLLR P+ + P E+E VYIPE RGTLCVSSQVGC Sbjct: 81 KHVTLDRPEVVAEQISSDGTRKWLLRLPSGDDLEKPHEVECVYIPETDRGTLCVSSQVGC 140 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L CSFC+TGTQ+LVRNLTA EI+ Q+++AR L D+ E P R ++NIVM Sbjct: 141 TLNCSFCHTGTQRLVRNLTAGEIVGQIMVARDRLNDWADRET------PHGNRLVTNIVM 194 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFD V+ L I +D+ G+ SKRRITLSTSG VPNI R GEEIGVMLAISLH Sbjct: 195 MGMGEPLYNFDAVRDGLLIVADNEGIGISKRRITLSTSGVVPNIVRAGEEIGVMLAISLH 254 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV ++LR+ LVP+NRKYP+ L+ ACR YP SNA+RITFEYVMLKG+NDS DA L+K Sbjct: 255 AVRDELRDELVPLNRKYPIAELMQACRDYPAASNAKRITFEYVMLKGVNDSLDDARRLVK 314 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L GI AKINLIPFNPWPG Y CSD I FSE + +GYSSP+RTPRG DILAACGQ Sbjct: 315 LLNGIHAKINLIPFNPWPGTRYECSDWDQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 374 Query: 365 LKSLSKRIPKVPRQEMQ 381 LKS ++++ RQ ++ Sbjct: 375 LKSETEKLSARERQALR 391 >gi|86359510|ref|YP_471402.1| hypothetical protein RHE_CH03930 [Rhizobium etli CFN 42] gi|86283612|gb|ABC92675.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 360 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 244/349 (69%), Positives = 289/349 (82%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 MR SQ+W WIYVRG+ DF M+++++++R +L QHF+I PEIV+E++S DGTRKWLLRF Sbjct: 1 MRVSQLWNWIYVRGVSDFDHMTNVAKDMREMLKQHFTIARPEIVEEQVSNDGTRKWLLRF 60 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 PAR G PVEIE VYIPE+ RGTLC+SSQVGC+LTCSFC+TGTQ+LVRNLTAEEIL Q+L Sbjct: 61 PARGAGRPVEIEAVYIPEEGRGTLCISSQVGCTLTCSFCHTGTQRLVRNLTAEEILSQLL 120 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 LAR LGDFP E +G ++P+ GRK+SNIVMMGMGEPL NFD VK++L IA+D GLS Sbjct: 121 LARDRLGDFPDREAPQGTIMPAEGRKVSNIVMMGMGEPLYNFDAVKQALLIATDGDGLSL 180 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 SKRR+TLSTSG VP I R GEEIGVMLAISLHAV +DLR+ILVPIN+KYPL+ LIDAC+ Sbjct: 181 SKRRVTLSTSGVVPEIFRTGEEIGVMLAISLHAVRDDLRDILVPINKKYPLKELIDACKA 240 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 YPGLSNARRITFEYVMLK +NDS DA LIK+LKG+PAKINLIPFNPWPG Y CSD + Sbjct: 241 YPGLSNARRITFEYVMLKDVNDSLEDAKGLIKLLKGVPAKINLIPFNPWPGTNYQCSDWE 300 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQ 381 I F++ I +GY+SPIRTPRG DILAACGQLKS S+R+ K R + Sbjct: 301 QIEKFADFINSAGYASPIRTPRGRDILAACGQLKSESERMRKTERLAFE 349 >gi|254512050|ref|ZP_05124117.1| radical SAM enzyme, Cfr family [Rhodobacteraceae bacterium KLH11] gi|221535761|gb|EEE38749.1| radical SAM enzyme, Cfr family [Rhodobacteraceae bacterium KLH11] Length = 397 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 204/381 (53%), Positives = 265/381 (69%), Gaps = 12/381 (3%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ R+ L AL++ G P++ +MRT QIW+WIY G+RDF M+++++ R L Sbjct: 22 KVNLVGLTRDALRAALIEHGTPEKQAKMRTGQIWQWIYQWGVRDFAEMTNLAKAYRAQLA 81 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +HF I PE+V ++S DGTRK+L R I G E+E VYIPE RGTLC+SSQVGC+ Sbjct: 82 EHFVIEIPEVVTRQVSEDGTRKYLCR-----IAGGHEVEVVYIPEDDRGTLCISSQVGCT 136 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLTA EI+ QV++AR L ++P R +SNIV+M Sbjct: 137 LTCSFCHTGTQKLVRNLTAAEIVGQVMMARDDLEEWPTP-----GAPKDETRLLSNIVLM 191 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV+ ++ IA D G+S S+RRITLSTSG VP IAR EEIG +LAIS HA Sbjct: 192 GMGEPLYNFDNVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCLLAISFHA 251 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +++ R++LVPIN+++ +E L+ A YP +SN+ RITFEYVML G+NDS DA LI+ Sbjct: 252 TTDETRDMLVPINKRWNIEELLQALASYPKVSNSERITFEYVMLDGVNDSDADAHRLIEH 311 Query: 306 LK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +K IPAKINLIPFN WPG Y S I F+ I ++GY+SPIR RG DI+AACG Sbjct: 312 IKRHNIPAKINLIPFNEWPGAPYKRSSNNRIRAFANIIYQAGYASPIRKTRGEDIMAACG 371 Query: 364 QLKSLSKRIPKVPRQEMQITG 384 QLKS ++R K +Q G Sbjct: 372 QLKSATERARKSRKQIEAEAG 392 >gi|254451490|ref|ZP_05064927.1| radical SAM enzyme, Cfr family [Octadecabacter antarcticus 238] gi|198265896|gb|EDY90166.1| radical SAM enzyme, Cfr family [Octadecabacter antarcticus 238] Length = 399 Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 202/378 (53%), Positives = 273/378 (72%), Gaps = 8/378 (2%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +++G+ R++L +AL+ +G+ ++ +MR +Q+W+W+Y G+R+F M+++S++ R L + Sbjct: 29 TNIVGLTRDQLRDALIGVGVTEKQAKMRVNQVWQWLYHWGVREFDVMTNLSKDFRATLAE 88 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 HF I PE+V + +S DGTRK+L+R I G E+E VYIPEK RGTLC+SSQVGC+L Sbjct: 89 HFKIELPEVVTKDVSTDGTRKYLVR-----IAGGHEVEVVYIPEKDRGTLCISSQVGCTL 143 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 TCSFC+TGTQKLVRNLTA EI+ QV+LAR L ++P G P R +SNIV+MG Sbjct: 144 TCSFCHTGTQKLVRNLTAGEIIGQVMLARDDLNEWPEPGQGTGDNGP---RLLSNIVLMG 200 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL NF+NV+ ++ IA D G++ S+RRITLSTSG VP I R EIG MLAIS H Sbjct: 201 MGEPLYNFENVRDAMKIAMDGEGIALSRRRITLSTSGVVPEIHRTANEIGCMLAISFHGT 260 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++++R+ LVPIN+K+ LE L++A YP +SN+ RITFEYVMLK +NDS DA L+K++ Sbjct: 261 TDEIRDKLVPINKKWNLEKLLEALAAYPKVSNSERITFEYVMLKDVNDSDEDARRLVKLI 320 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +GIPAKINLIPFN WPG Y SD I F++ I +GY+SPIR PRG DI+AACGQLK Sbjct: 321 EGIPAKINLIPFNEWPGAPYKRSDSDRIKAFADIIYNAGYASPIRRPRGEDIMAACGQLK 380 Query: 367 SLSKRIPKVPRQEMQITG 384 S ++R K +Q G Sbjct: 381 SATERARKSRKQIDADAG 398 >gi|85714487|ref|ZP_01045475.1| hypothetical protein NB311A_16087 [Nitrobacter sp. Nb-311A] gi|85698934|gb|EAQ36803.1| hypothetical protein NB311A_16087 [Nitrobacter sp. Nb-311A] Length = 423 Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 224/377 (59%), Positives = 277/377 (73%), Gaps = 7/377 (1%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIG+ R E+ E L IG+P+ RMR Q+W W+YVRG + F M+ +S+++ L Sbjct: 47 KPSLIGLSRAEIAERLAAIGVPREQRRMRVQQLWHWMYVRGAQSFSEMTSVSKDMHTELE 106 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARC-IGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +H ++ PE+V E+IS DGTRKWLLR P+ + P E+E VYIPE RGTLC+SSQVGC Sbjct: 107 KHVTVDRPEVVAEQISSDGTRKWLLRLPSGNDLEKPHEVECVYIPETDRGTLCISSQVGC 166 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L CSFC+TGTQ+LVRNLTA EI+ Q+++AR L D+ E P R ++NIVM Sbjct: 167 TLNCSFCHTGTQRLVRNLTAGEIVGQIMVARDRLNDWADRET------PHGNRLVTNIVM 220 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFD V+ L I +D+ G+ SKRRITLSTSG VPNI R GEEIGVMLAISLH Sbjct: 221 MGMGEPLYNFDAVRDGLLIVADNEGIGISKRRITLSTSGVVPNIVRAGEEIGVMLAISLH 280 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV ++LRN LVP+NRKYP+ L+ ACR YP SNA+RITFEYVMLKG+NDS DA L+K Sbjct: 281 AVRDELRNELVPLNRKYPIAELMQACRDYPAASNAKRITFEYVMLKGVNDSLEDAKRLVK 340 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGI AKINLIPFNPWPG Y CSD I FSE + +GYSSP+RTPRG DILAACGQ Sbjct: 341 LLKGIHAKINLIPFNPWPGTRYECSDWDQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQ 400 Query: 365 LKSLSKRIPKVPRQEMQ 381 LKS ++++ RQ ++ Sbjct: 401 LKSETEKLSARERQALR 417 >gi|254462169|ref|ZP_05075585.1| radical SAM enzyme, Cfr family [Rhodobacterales bacterium HTCC2083] gi|206678758|gb|EDZ43245.1| radical SAM enzyme, Cfr family [Rhodobacteraceae bacterium HTCC2083] Length = 391 Score = 481 bits (1239), Expect = e-134, Method: Composition-based stats. Identities = 201/378 (53%), Positives = 268/378 (70%), Gaps = 10/378 (2%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+G+ R+ + +AL++ G P++ +MR QIW+WIY G RDF M+++S+ R L + Sbjct: 23 INLVGLTRDGMRDALIENGTPEKQAKMRVGQIWQWIYQWGKRDFDEMTNLSKTYRAELGE 82 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 F I PE+V ++S DGTRK+L++ I G E+E VYIPE RGTLCVSSQVGC+L Sbjct: 83 KFVIEVPEVVTRQVSEDGTRKYLVK-----IAGGHEVEVVYIPEDGRGTLCVSSQVGCTL 137 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 TCSFC+TGTQKLVRNLTA EI+ QV++AR L ++P E R +SNIV+MG Sbjct: 138 TCSFCHTGTQKLVRNLTAGEIIGQVMIARDDLNEWP-----EQGAPKDEIRLLSNIVLMG 192 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL NF+NV+ ++ IA D+ G+ S+RRITLSTSG VP IAR EEIG LAIS HA Sbjct: 193 MGEPLYNFENVRDAMKIAMDAEGIQLSRRRITLSTSGVVPEIARTAEEIGCQLAISFHAT 252 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++++R+ LVPIN+++ + L++A R YP +SN+ RITFEYVML G+ND+ DA LIK++ Sbjct: 253 TDEVRDKLVPINKRWNIAELVEALRAYPRVSNSERITFEYVMLDGVNDTDADAHRLIKLI 312 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +GIPAKINLIPFN WPG Y S I F++ I ++GY+SPIR PRG DI+AACGQLK Sbjct: 313 EGIPAKINLIPFNEWPGAPYKRSSGNRIHRFADIIYKAGYASPIRKPRGEDIMAACGQLK 372 Query: 367 SLSKRIPKVPRQEMQITG 384 S ++R K +Q G Sbjct: 373 SATERARKSRKQIQAEAG 390 >gi|99082854|ref|YP_615008.1| hypothetical protein TM1040_3014 [Ruegeria sp. TM1040] gi|122984035|sp|Q1GC70|RLMN_SILST RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|99039134|gb|ABF65746.1| hypothetical protein TM1040_3014 [Ruegeria sp. TM1040] Length = 397 Score = 480 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 199/381 (52%), Positives = 263/381 (69%), Gaps = 12/381 (3%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ R+ + L++ G P++ +MR QIW+WIY G+RDF M+++++ R L Sbjct: 23 KINLVGLTRDRMRAVLIENGTPEKQAKMRVGQIWQWIYQWGVRDFAEMTNLAKAYRAQLE 82 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + F I PE+V +++S DGTRK+L+R I G E+E VYIPE RGTLC+SSQVGC+ Sbjct: 83 ETFEIRIPEVVSKQVSTDGTRKYLVR-----INGGHEVEVVYIPEDDRGTLCISSQVGCT 137 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLT EI+ QV++AR L ++P R +SNIV+M Sbjct: 138 LTCSFCHTGTQKLVRNLTPAEIIGQVMMARDDLEEWPTP-----GAPKDETRLLSNIVLM 192 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV+ ++ IA D G+S S+RRITLSTSG VP IAR EEIG +LAIS HA Sbjct: 193 GMGEPLYNFDNVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCLLAISFHA 252 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +N++R++LVPINR++ ++ L+ A YP +SN+ RITFEYVML G+NDS DA L+ Sbjct: 253 TTNEVRDVLVPINRRWNIDELLQALADYPKVSNSERITFEYVMLDGVNDSDEDAHRLLDH 312 Query: 306 LK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +K IPAKINLIPFN WPG Y S I F+ I ++GY+SPIR RG DI+AACG Sbjct: 313 IKRHNIPAKINLIPFNEWPGAPYKRSSNNRIRAFANIIYQAGYASPIRKTRGDDIMAACG 372 Query: 364 QLKSLSKRIPKVPRQEMQITG 384 QLKS ++R K +Q G Sbjct: 373 QLKSATERARKSRKQIEAEAG 393 >gi|300024847|ref|YP_003757458.1| radical SAM enzyme, Cfr family [Hyphomicrobium denitrificans ATCC 51888] gi|299526668|gb|ADJ25137.1| radical SAM enzyme, Cfr family [Hyphomicrobium denitrificans ATCC 51888] Length = 401 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 227/376 (60%), Positives = 289/376 (76%), Gaps = 2/376 (0%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K SL G+ R L+EAL G+P++ + MR +Q+W WIYVRGI F+ M+D+S+++R L Sbjct: 20 EKRSLAGLTRARLKEALAAGGVPEKQLNMRVNQLWSWIYVRGITRFEDMTDVSKDLRRQL 79 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCI-GGPVEIETVYIPEKSRGTLCVSSQVG 123 + +++ PEI+ E+IS DGTRKWLLR R P E+ETVYIPE RGTLC+SSQVG Sbjct: 80 DAIYTLDRPEIISEQISVDGTRKWLLRLAKRGHEARPPEVETVYIPESDRGTLCISSQVG 139 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE-GMVIPSVGRKISNI 182 C+LTCSFC+TGTQ+LVRNL A+EI+ Q++LAR +GD+PG + + G ++P+ RKI+N+ Sbjct: 140 CTLTCSFCHTGTQRLVRNLEAQEIVGQIMLARDRIGDWPGAKGPDDGRLLPASERKITNV 199 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 V+MGMGEPL NFDNVK ++ +ASD GL+ SKRRITLSTSG VP I R GEE MLAIS Sbjct: 200 VLMGMGEPLYNFDNVKAAMEVASDGDGLALSKRRITLSTSGVVPEIPRWGEEADTMLAIS 259 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA ++ LR+ LVPINRKYP+ L+ ACR YPGLSNARRITFEYVMLKG+NDS +A L Sbjct: 260 LHATNDALRDELVPINRKYPIAELMQACRDYPGLSNARRITFEYVMLKGVNDSLAEARAL 319 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +K+L GIPAKINLIPFNPWP Y CSD + I F+E + R+GY+SP+RTPRG DILAAC Sbjct: 320 VKLLAGIPAKINLIPFNPWPNTRYECSDWETIERFAEVVNRAGYASPVRTPRGRDILAAC 379 Query: 363 GQLKSLSKRIPKVPRQ 378 GQL+S S R+ R+ Sbjct: 380 GQLRSESLRLSASERR 395 >gi|220924357|ref|YP_002499659.1| radical SAM enzyme, Cfr family [Methylobacterium nodulans ORS 2060] gi|219948964|gb|ACL59356.1| radical SAM enzyme, Cfr family [Methylobacterium nodulans ORS 2060] Length = 431 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 217/385 (56%), Positives = 281/385 (72%), Gaps = 4/385 (1%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M + SL+G+ R L E L IG+P+R RMRT Q+W WI VRG F+ M+++ + + Sbjct: 32 MVATGRPSLVGLTRNALRERLAAIGVPEREQRMRTGQLWHWINVRGASSFEAMTNVGKAL 91 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG---PVEIETVYIPEKSRGTLC 117 + L Q +++ PE+V E++S DGTRKWLLR P EIE VYIP RGTLC Sbjct: 92 KAELEQVYTLDRPEVVSEQVSRDGTRKWLLRMPPTGRHDHNRGAEIECVYIPANDRGTLC 151 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 VSSQVGC+LTCSFC+TGTQ+LVRNL+A+EI Q+++AR LGD+PG +G +P G Sbjct: 152 VSSQVGCTLTCSFCHTGTQRLVRNLSAQEITAQLVVARDRLGDWPGQSPPKGTFVPVDGS 211 Query: 178 K-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236 + +SN+V MGMGEPL N DNV ++ + SD+ GL S+RRIT+STSG VP R+G + Sbjct: 212 RFVSNVVFMGMGEPLYNVDNVIDAIGVMSDNEGLGLSRRRITVSTSGVVPQFERLGIDAN 271 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 MLAISLHAV +DLRN+LVP+NRKYP+ L+DACR+YPG+SNARRITFEYVMLKG+NDS Sbjct: 272 AMLAISLHAVRDDLRNVLVPLNRKYPIRELLDACRNYPGVSNARRITFEYVMLKGVNDSD 331 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 +A L+++LKGIPAKINLIPFNPWPG Y CSD + I FSE + +GY+SP+RTPRG Sbjct: 332 AEARELVRLLKGIPAKINLIPFNPWPGSSYECSDWERIERFSEIVFNAGYASPVRTPRGR 391 Query: 357 DILAACGQLKSLSKRIPKVPRQEMQ 381 DILAACGQLKS ++++ R ++ Sbjct: 392 DILAACGQLKSETEKLRARARLMLE 416 >gi|83647153|ref|YP_435588.1| Fe-S-cluster redox protein [Hahella chejuensis KCTC 2396] gi|123753570|sp|Q2SDW1|RLMN_HAHCH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|83635196|gb|ABC31163.1| predicted Fe-S-cluster redox enzyme [Hahella chejuensis KCTC 2396] Length = 378 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 164/374 (43%), Positives = 231/374 (61%), Gaps = 20/374 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+GM R +LE +G + R +Q+ KW+Y G+ DF M+++S+ +R L Sbjct: 7 KINLLGMNRSDLETFFESLG----EKKFRATQLMKWMYHLGVSDFDLMTNMSKALREKLK 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + PE++ E IS DGTRKW++R G IETVYIP+ RGTLCVSSQ+GCS Sbjct: 63 EVAEVSVPEVIYEDISADGTRKWVMRL-----AGGNSIETVYIPDNGRGTLCVSSQIGCS 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q RNL++ EI+ Q+ +A GD+ ++ R ++NIV M Sbjct: 118 LDCSFCSTGKQGFNRNLSSAEIIGQLWIAARSFGDYDLSKE----------RYVTNIVFM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ + D G SKRR+T+STSG VP + ++G+ V LAISLHA Sbjct: 168 GMGEPLLNFDNVVRACDVMMDDFGFGISKRRLTVSTSGLVPALDKLGDVTDVSLAISLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYP-GLSNARRITFEYVMLKGINDSPRDALNLIK 304 +N LR++LVP+N+KYP+E L+ AC Y LS+ RRIT EY ++ G+NDS A L Sbjct: 228 PNNSLRDVLVPVNKKYPIEELLAACHRYLGKLSDKRRITVEYTLIAGVNDSETHAHELRD 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L+ +P KINLIPFNP+P Y + + F + + +GY + +RT RG DI AACGQ Sbjct: 288 LLRDLPCKINLIPFNPFPNSGYERPSRNATLRFQKVLSDAGYVATVRTTRGDDIDAACGQ 347 Query: 365 LKSLSKRIPKVPRQ 378 L + + ++ Sbjct: 348 LVGRVEDRTRRSQK 361 >gi|56698170|ref|YP_168542.1| radical SAM protein [Ruegeria pomeroyi DSS-3] gi|81348990|sp|Q5LN66|RLMN_SILPO RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|56679907|gb|AAV96573.1| radical SAM enzyme, Cfr family [Ruegeria pomeroyi DSS-3] Length = 393 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 198/381 (51%), Positives = 267/381 (70%), Gaps = 12/381 (3%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + +L+G+ R+ + E L+ G P++ +MR QIW+WIY G+RDF+ M+++++ R L Sbjct: 22 RINLVGLTRDRMREVLIDHGTPEKQAKMRVGQIWQWIYQWGVRDFEAMTNLAKAYRAQLA 81 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +HF+I PE++ +S DGTRK+L+R I G E+E VYIPE+ RGTLC+SSQVGC+ Sbjct: 82 EHFTIEIPEVITRLVSEDGTRKYLVR-----IAGGHEVEVVYIPEEDRGTLCISSQVGCT 136 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLTA EI+ QV++AR LG++P R +SNIV+M Sbjct: 137 LTCSFCHTGTQKLVRNLTAAEIVGQVMMARDDLGEWPVP-----GAPKDETRLLSNIVLM 191 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV+ ++ IA D G+ S+RRITLSTSG VP IAR EEIG +LAIS HA Sbjct: 192 GMGEPLYNFDNVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAEEIGCLLAISFHA 251 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++R++LVPIN+++ +E L+ A YP +SN+ RITFEYVML G+NDS DA L+ Sbjct: 252 TTDEVRDVLVPINKRWNIEELLSALAAYPKVSNSERITFEYVMLDGVNDSDADAHRLLDH 311 Query: 306 LKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++ IPAKINLIPFN WPG Y S I F+ I ++GY++PIR RG DI+AACG Sbjct: 312 IRRYKIPAKINLIPFNEWPGAPYKRSSNNRIRAFANIIYQAGYAAPIRKTRGDDIMAACG 371 Query: 364 QLKSLSKRIPKVPRQEMQITG 384 QLKS ++R K +Q TG Sbjct: 372 QLKSATERARKSKKQIEAETG 392 >gi|259417568|ref|ZP_05741487.1| radical SAM enzyme, Cfr family [Silicibacter sp. TrichCH4B] gi|259346474|gb|EEW58288.1| radical SAM enzyme, Cfr family [Silicibacter sp. TrichCH4B] Length = 397 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 197/381 (51%), Positives = 266/381 (69%), Gaps = 12/381 (3%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ R+ + E L++ G P++ +MR QIW+WIY G+R+F M+++++ R L Sbjct: 23 KINLVGLTRDRMREVLMEHGTPEKQAKMRVGQIWQWIYQWGVRNFSEMTNLAKAYRAQLE 82 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + F I PE+V +++S DGTRK+L+R I G E+E VYIPE RGTLC+SSQVGC+ Sbjct: 83 ETFEIRIPEVVSKQVSTDGTRKYLVR-----INGGHEVEVVYIPEDDRGTLCISSQVGCT 137 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLT EI+ QV++AR L ++P R +SNIV+M Sbjct: 138 LTCSFCHTGTQKLVRNLTPAEIIGQVMMARDDLEEWPTP-----GAPKDETRLLSNIVLM 192 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+NV+ ++ IA D G+S S+RRITLSTSG VP IAR EEIG +LAIS HA Sbjct: 193 GMGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCLLAISFHA 252 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +N++R++LVPINR++ ++ L+ + +YP +SN+ RITFEYVML G+NDS DA L++ Sbjct: 253 TTNEVRDVLVPINRRWNIDELLQSLANYPKVSNSERITFEYVMLDGVNDSDEDAHRLLEH 312 Query: 306 LK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +K IPAKINLIPFN WPG Y S I F+ I ++GY+SPIR RG DI+AACG Sbjct: 313 IKRYDIPAKINLIPFNEWPGAPYKRSSNNRIRAFANIIYQAGYASPIRKTRGDDIMAACG 372 Query: 364 QLKSLSKRIPKVPRQEMQITG 384 QLKS ++R K +Q G Sbjct: 373 QLKSATERARKSRKQIEAEAG 393 >gi|197106949|ref|YP_002132326.1| predicted Fe-S-cluster redox enzyme [Phenylobacterium zucineum HLK1] gi|254807192|sp|B4RCA4|RLMN_PHEZH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|196480369|gb|ACG79897.1| predicted Fe-S-cluster redox enzyme [Phenylobacterium zucineum HLK1] Length = 385 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 201/381 (52%), Positives = 273/381 (71%), Gaps = 16/381 (4%) Query: 6 KESLIGMMREELEEALLKIGI-PQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 + +L GM R EL L+++G+ +MR SQ+W+W++ G+ DF+ M+D+++E R L Sbjct: 19 RPNLSGMTRAELAACLVELGVVRPEKAKMRASQLWRWMHHYGVTDFEKMTDVAKETRAAL 78 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVG 123 + +I P++V+ ++S DGTRKWL+R +E+ETVYIP+ R G LCVSSQVG Sbjct: 79 AEVCAISRPQVVERQVSKDGTRKWLIRMAP-----GIEVETVYIPDVGRAGALCVSSQVG 133 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L C+FC+TGTQ LVRNLTA EI+ QV +AR LG++P P R++SNIV Sbjct: 134 CTLNCTFCHTGTQALVRNLTAAEIVAQVQVARDDLGEWPS---------PKEDRRLSNIV 184 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MGMGEPL N DNV ++ I +D+ G++ S+RRIT+STSG VP +A +GE MLAISL Sbjct: 185 FMGMGEPLYNLDNVAAAIDIIADNEGIAISRRRITVSTSGVVPELAALGERTQAMLAISL 244 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++LR LVP+NRKYP+ L+ A R YPGLSN++R+TFEYVMLKG+NDSP +A L+ Sbjct: 245 HATNDELREKLVPLNRKYPIAELMAAIRAYPGLSNSKRVTFEYVMLKGVNDSPAEAKALV 304 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LKG+PAKINLIPFNPWPG +Y CSD I F+ + R+GY+SPIRTPRG DILAACG Sbjct: 305 NLLKGVPAKINLIPFNPWPGSQYECSDWGTIERFAAVLNRAGYASPIRTPRGRDILAACG 364 Query: 364 QLKSLSKRIPKVPRQEMQITG 384 QLKS S+++ R+++ G Sbjct: 365 QLKSESEKLRASARRKLAAGG 385 >gi|83952609|ref|ZP_00961339.1| radical SAM enzyme, Cfr family protein [Roseovarius nubinhibens ISM] gi|83835744|gb|EAP75043.1| radical SAM enzyme, Cfr family protein [Roseovarius nubinhibens ISM] Length = 395 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 203/379 (53%), Positives = 270/379 (71%), Gaps = 12/379 (3%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+G+ R+++ + L+ G P++ +MR SQIW+WIY G+RDF M+++++ R L + Sbjct: 23 VNLVGLTRDKMRDVLIAHGTPEKQAKMRVSQIWQWIYQWGVRDFDAMTNLAKAYRAELAE 82 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 F I PE+V +++S DGTRK+L+R I G E+E VYIPE+ RGTLCVSSQVGC+L Sbjct: 83 KFVIEIPEVVSKQVSSDGTRKYLVR-----IAGGHEVEVVYIPEEDRGTLCVSSQVGCTL 137 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 TCSFC+TGTQKLVRNLTA EI+ QV++AR LG++P E R +SNIV+MG Sbjct: 138 TCSFCHTGTQKLVRNLTAGEIIGQVMMARDDLGEWP-----EQGAPKDETRLLSNIVLMG 192 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL NFDNV+ ++ IA D+ G+ S+RRITLSTSG VP IAR +EIG LAIS HA Sbjct: 193 MGEPLYNFDNVRDAMKIAMDAEGIQLSRRRITLSTSGVVPEIARTAQEIGCQLAISFHAT 252 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 +++ RN LVPIN+++ +E L+ A YP +SN+ RITFEYVML G+ND+ DA LI+++ Sbjct: 253 TDETRNKLVPINKRWNIEELLQALASYPKVSNSERITFEYVMLDGVNDTDDDARRLIQMI 312 Query: 307 KG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 K IPAKINLIPFN WPG Y S I F++ I ++GY+SPIRTPRG DI+AACGQ Sbjct: 313 KDHAIPAKINLIPFNEWPGAPYKRSSNNRIRAFADIIYKAGYASPIRTPRGEDIMAACGQ 372 Query: 365 LKSLSKRIPKVPRQEMQIT 383 LKS ++R K R+ T Sbjct: 373 LKSATERARKSRREIEAET 391 >gi|170742676|ref|YP_001771331.1| radical SAM protein [Methylobacterium sp. 4-46] gi|205829810|sp|B0UQR1|RLMN_METS4 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|168196950|gb|ACA18897.1| radical SAM enzyme, Cfr family [Methylobacterium sp. 4-46] Length = 431 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 215/385 (55%), Positives = 280/385 (72%), Gaps = 4/385 (1%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M + SL+G+ R L E L IG+P+R RMRT Q+W WI VRG F+ M+++ + + Sbjct: 32 MVATGRPSLVGLTRGALRERLAAIGVPEREQRMRTGQLWHWINVRGAASFEAMTNVGKGL 91 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG---PVEIETVYIPEKSRGTLC 117 + L + +++ PE+V E++S DGTRKWLLR P EIE VYIP RGTLC Sbjct: 92 KAQLEEAYTLDRPEVVSEQVSRDGTRKWLLRMPPTGRHDHNRGAEIECVYIPANDRGTLC 151 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 VSSQVGC+LTCSFC+TGTQ+LVRNL+A+EI Q+++AR LGD+PG +G +P G Sbjct: 152 VSSQVGCTLTCSFCHTGTQRLVRNLSAQEITAQLVVARDRLGDWPGQVPPKGTFVPVDGS 211 Query: 178 K-ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236 + +SNIV MGMGEPL N DNV ++ + SD+ GL S+RRIT+STSG VP R+G + Sbjct: 212 RFVSNIVFMGMGEPLYNVDNVVDAVGVMSDNEGLGLSRRRITVSTSGVVPQFERLGIDAN 271 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 MLAISLHAV +DLR+ LVP+NRKYP+ L++ACR+YPG+SNARRITFEYVMLKG+NDS Sbjct: 272 AMLAISLHAVRDDLRDELVPLNRKYPIRTLLEACRNYPGVSNARRITFEYVMLKGVNDSD 331 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 +A L+++LKGIPAKINLIPFNPWPG Y CSD + I FSE + +GY+SP+RTPRG Sbjct: 332 SEARELVRLLKGIPAKINLIPFNPWPGSRYECSDWERIERFSEIVFNAGYASPVRTPRGR 391 Query: 357 DILAACGQLKSLSKRIPKVPRQEMQ 381 DILAACGQLKS ++++ R ++ Sbjct: 392 DILAACGQLKSETEKLRARARLMLE 416 >gi|84500532|ref|ZP_00998781.1| radical SAM superfamily protein [Oceanicola batsensis HTCC2597] gi|84391485|gb|EAQ03817.1| radical SAM superfamily protein [Oceanicola batsensis HTCC2597] Length = 398 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 202/370 (54%), Positives = 275/370 (74%), Gaps = 10/370 (2%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +++G+ RE L +AL+ +G P++ RMR +Q+W+WIY G+RDF M++++++ R L Sbjct: 24 KPNIVGLTREALRQALIDMGTPEKQARMRVNQVWQWIYHWGVRDFSQMTNLARDYRGKLT 83 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + F I PE+V +++S DGTRK+L+R I G E+ETVYIPE RGTLC+SSQVGC+ Sbjct: 84 ETFRIDLPEMVSKQVSADGTRKYLMR-----IAGGHEVETVYIPEADRGTLCISSQVGCT 138 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQ+LVRNL+A+EI+ Q+++AR LG++P R +SNIV+M Sbjct: 139 LTCSFCHTGTQRLVRNLSADEIVGQIMVARDDLGEWPVP-----GAPKREERLLSNIVLM 193 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV+ ++ IA D G+S S+RRITLSTSG VP IAR EEIG +LA+S HA Sbjct: 194 GMGEPLYNFDNVRDAMKIAMDGEGISLSRRRITLSTSGVVPEIARCAEEIGCLLAVSFHA 253 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++R+ LVPIN+++ +E L+ A R YP LSN+ RITFEYVMLK +NDS DA L+K+ Sbjct: 254 TTDEVRDRLVPINKRWNIETLLTALRDYPRLSNSERITFEYVMLKDVNDSDADARRLVKL 313 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + GIPAKINLIPFN WPG Y SD I +F++ + ++GY+SPIRTPRG DI+AACGQL Sbjct: 314 ISGIPAKINLIPFNEWPGAPYERSDWSRIESFADIVHKAGYASPIRTPRGEDIMAACGQL 373 Query: 366 KSLSKRIPKV 375 KS ++R K Sbjct: 374 KSATERERKS 383 >gi|126738619|ref|ZP_01754324.1| radical SAM enzyme, Cfr family protein [Roseobacter sp. SK209-2-6] gi|126720418|gb|EBA17124.1| radical SAM enzyme, Cfr family protein [Roseobacter sp. SK209-2-6] Length = 396 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 198/381 (51%), Positives = 266/381 (69%), Gaps = 12/381 (3%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ R+++ E L++ G P++ +MR QIW+WIY G RDF M+++++ R L+ Sbjct: 23 KINLVGLTRDKMREVLIEHGTPEKQAKMRVGQIWQWIYQWGKRDFADMTNLAKAYRAQLD 82 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +HF I PE+V +++S DGTRK+L+R I G E+E VYIPE+ RGTLC+SSQVGC+ Sbjct: 83 EHFEIRIPEVVSKQVSTDGTRKYLVR-----IAGGHEVEVVYIPEEDRGTLCISSQVGCT 137 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLT E++ QV++AR L ++P R +SNIV+M Sbjct: 138 LTCSFCHTGTQKLVRNLTPGEVIGQVMMARDDLEEWPIP-----GAPKDETRLLSNIVLM 192 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+NV+ ++ IA D G+ S+RRITLSTSG VP IAR +EIG +LAIS HA Sbjct: 193 GMGEPLYNFENVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAQEIGCLLAISFHA 252 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +ND+R++LVPIN+++ ++ L+ A YP SN+ RITFEYVMLK +NDS DA LI+ Sbjct: 253 TTNDVRDVLVPINKRWNIDALLQALADYPKASNSERITFEYVMLKDVNDSDEDAHRLIEH 312 Query: 306 LK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +K IPAKINLIPFN WPG Y S I F+ I ++GY+SPIR RG DI+AACG Sbjct: 313 IKRYNIPAKINLIPFNEWPGSPYQRSSNNRIRAFANIIYQAGYASPIRKTRGDDIMAACG 372 Query: 364 QLKSLSKRIPKVPRQEMQITG 384 QLKS ++R K +Q G Sbjct: 373 QLKSATERARKSRKQIEAEAG 393 >gi|157961130|ref|YP_001501164.1| ribosomal RNA large subunit methyltransferase N [Shewanella pealeana ATCC 700345] gi|205829883|sp|A8H242|RLMN_SHEPA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|157846130|gb|ABV86629.1| radical SAM enzyme, Cfr family [Shewanella pealeana ATCC 700345] Length = 373 Score = 474 bits (1221), Expect = e-132, Method: Composition-based stats. Identities = 165/385 (42%), Positives = 225/385 (58%), Gaps = 25/385 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+ L ++G R Q+ KWIY G+ DF+ M++I++ +R L Sbjct: 4 KKINLLDLDRKALRALFTEMG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRAKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I+ PEI + S DGT K+ + +G E+ETVYIPE R TLCVSSQVGC Sbjct: 60 AAKCEIVAPEISSYQKSVDGTIKFAI-----NVGDGQEVETVYIPEDDRATLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ Q+ +G V + R I+N+VM Sbjct: 115 ALECTFCSTAQQGFNRNLTVAEIVGQIWRVADFIG----------FVKDTGERPITNVVM 164 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + ++G+ + V LA+S+H Sbjct: 165 MGMGEPLLNLKNVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDVLDVALAVSIH 224 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302 A +++LR++LVP+N+KYPLE + R Y SN R+T EYVML INDS A L Sbjct: 225 APNDELRDVLVPVNKKYPLEEFLGGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHEL 284 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K++K P K+NLIPFNP+PG Y S I FS+ + G + +R RG DI AAC Sbjct: 285 AKLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344 Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383 GQL + +KR+ K Q+ QI+ Sbjct: 345 GQLAGDIRDRTKRLAKKQMQQNQIS 369 >gi|260574031|ref|ZP_05842036.1| radical SAM enzyme, Cfr family [Rhodobacter sp. SW2] gi|259023497|gb|EEW26788.1| radical SAM enzyme, Cfr family [Rhodobacter sp. SW2] Length = 429 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 199/371 (53%), Positives = 267/371 (71%), Gaps = 10/371 (2%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +++G+ R++L AL+ G P+R +MR Q+W+W+Y G RDF MS+++++ R L Sbjct: 23 KINIVGLTRDQLHAALVAAGTPERQAKMRVGQVWQWVYHWGKRDFALMSNLAKDYRAFLA 82 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +HF I P++V ++S DGTRK+L+R I G E+E VYIPE RGTLC+SSQVGC+ Sbjct: 83 EHFVIELPQVVTRQLSDDGTRKYLVR-----IAGGHEVEVVYIPEDGRGTLCISSQVGCT 137 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTC+FC+TGTQ LVRNLTA EI+ QV+LAR LG++P R ISN+V+M Sbjct: 138 LTCTFCHTGTQVLVRNLTAAEIVGQVMLARDDLGEWP-----VQGAPKDETRLISNVVLM 192 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV+ ++ + D+ G++ +RRITLSTSG VP IAR EIG +LA+SLHA Sbjct: 193 GMGEPLYNFDNVRDAMKVVMDNEGIALGRRRITLSTSGVVPEIARTAREIGCLLAVSLHA 252 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++R+ LVPINRK+ + L+D R YPGL+N+ RITFEYVML+G+NDS DA L+++ Sbjct: 253 TTDEVRDKLVPINRKWNIAALMDELRAYPGLTNSERITFEYVMLQGVNDSKEDAYRLVEL 312 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +KGIPAKINLIPFN WPG Y S I F++ I +GY+SPIRTPRG DI+AACGQL Sbjct: 313 IKGIPAKINLIPFNEWPGAPYKRSSGNRIHAFADIIYNAGYASPIRTPRGEDIMAACGQL 372 Query: 366 KSLSKRIPKVP 376 KS ++R K Sbjct: 373 KSATERARKSR 383 >gi|167623296|ref|YP_001673590.1| ribosomal RNA large subunit methyltransferase N [Shewanella halifaxensis HAW-EB4] gi|205829881|sp|B0TLI1|RLMN_SHEHH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|167353318|gb|ABZ75931.1| radical SAM enzyme, Cfr family [Shewanella halifaxensis HAW-EB4] Length = 373 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 166/385 (43%), Positives = 225/385 (58%), Gaps = 25/385 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+ L ++G R Q+ KWIY G+ DF+ M++I++ +R L Sbjct: 4 KKINLLDLDRKALRVLFTEMG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRAKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I+ PEI + S DGT K+ + +G E+ETVYIPE R TLCVSSQVGC Sbjct: 60 AAKCEIVAPEISSYQKSVDGTIKFAI-----NVGDGQEVETVYIPEDDRATLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ Q+ +G V + R I+N+VM Sbjct: 115 ALECTFCSTAQQGFNRNLTVAEIVGQIWRVADFIG----------FVKDTGERPITNVVM 164 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + ++G+ + V LA+S+H Sbjct: 165 MGMGEPLLNLKNVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIH 224 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302 A +++LR++LVP+N+KYPLE + R Y SN R+T EYVML INDS A L Sbjct: 225 APNDELRDVLVPVNKKYPLEEFLGGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHEL 284 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K++K P K+NLIPFNP+PG Y S I FS+ + G + +R RG DI AAC Sbjct: 285 AKLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344 Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383 GQL + +KR+ K QE QI+ Sbjct: 345 GQLAGDIRDRTKRLAKKQMQESQIS 369 >gi|315497788|ref|YP_004086592.1| radical sam enzyme, cfr family [Asticcacaulis excentricus CB 48] gi|315415800|gb|ADU12441.1| radical SAM enzyme, Cfr family [Asticcacaulis excentricus CB 48] Length = 411 Score = 473 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 205/381 (53%), Positives = 276/381 (72%), Gaps = 16/381 (4%) Query: 6 KESLIGMMREELEEALLKIGI-PQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K ++ G+ R+ L AL + G+ +R +MR QIW+W++ G DF M+DI ++ R L Sbjct: 16 KVNITGLTRDGLIAALKESGVVEERKAKMRAQQIWRWVHHYGFTDFDKMTDIGKDQRGPL 75 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVG 123 ++ F++ PE+V+ ++S DGTRKWL+R +E+ETVYIP+ R G LCVSSQVG Sbjct: 76 SEKFTLARPEVVERQVSKDGTRKWLIRMAP-----GIEVETVYIPDVGRSGALCVSSQVG 130 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L CSFC+TGTQ+LVRNLTA EI+ QV +AR LG++P P R++SNIV Sbjct: 131 CTLNCSFCHTGTQRLVRNLTAAEIVAQVQVARDDLGEWPS---------PKEDRRLSNIV 181 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MGMGEPL N DNV ++ I SD+ G++ S+RRIT+STSG VP + +G+ MLAISL Sbjct: 182 FMGMGEPLYNLDNVADAIDIISDNEGIAISRRRITVSTSGVVPELDALGKRTAAMLAISL 241 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++LR++LVPIN+KYPL+ L+ A R YP LSNARR+TFEYVMLKG+NDSP +A LI Sbjct: 242 HATNDELRDVLVPINKKYPLKDLMAAIRAYPDLSNARRVTFEYVMLKGVNDSPAEARELI 301 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K++KGIPAKINLIPFNPWPG +Y CSD + I F+ + ++GY+SPIRTPRG DILAACG Sbjct: 302 KLIKGIPAKINLIPFNPWPGTDYQCSDWRTIEAFAAILNKAGYASPIRTPRGRDILAACG 361 Query: 364 QLKSLSKRIPKVPRQEMQITG 384 QLKS S+++ ++ Q+ G Sbjct: 362 QLKSESEKVRASALRKAQVEG 382 >gi|296534699|ref|ZP_06897089.1| cfr family radical SAM enzyme [Roseomonas cervicalis ATCC 49957] gi|296264972|gb|EFH11207.1| cfr family radical SAM enzyme [Roseomonas cervicalis ATCC 49957] Length = 409 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 195/373 (52%), Positives = 255/373 (68%), Gaps = 18/373 (4%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + L+G+ REEL ++ IG R Q+W WIY +G+ DF MS I++ ++ L Sbjct: 41 RRDLVGLSREELVAEMVAIG----EKPFRAKQLWHWIYHQGVTDFSQMSTIAKAMQGKLA 96 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP--EKSRGTLCVSSQVG 123 + F + P + E+ S DGTRKWL F ++ETVYIP E+ RG +CVS+QVG Sbjct: 97 ERFVVGRPGVTTEQTSTDGTRKWLFGFRD-----GQQVETVYIPDPEEDRGAVCVSTQVG 151 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L+C FC+TGTQKLVRNL A EI+ Q + AR G++P D R +S IV Sbjct: 152 CTLSCKFCHTGTQKLVRNLGAAEIVGQFMAARDSYGEWPSPTD-------GTPRLLSTIV 204 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 +MGMGEPL N++NV K++ I D G++ S+RRITLSTSG VP + R G E+GV LA+SL Sbjct: 205 IMGMGEPLYNYENVAKAMRIIMDGEGIALSRRRITLSTSGVVPMMDRCGAELGVGLAVSL 264 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HAV ND+R+ +VP+NRKYP+E L+ ACR YPG SNARRITFEYVMLKG+NDS DA L+ Sbjct: 265 HAVRNDIRDEIVPLNRKYPIEELMAACRRYPGASNARRITFEYVMLKGVNDSEADARELV 324 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++L+GIPAK+NLIPFNPWPG Y S I F+ ++ +GY+SPIRTPRG DILAACG Sbjct: 325 RLLQGIPAKVNLIPFNPWPGSPYETSSNNAIHRFARIVQEAGYASPIRTPRGRDILAACG 384 Query: 364 QLKSLSKRIPKVP 376 QLK+ S+R + Sbjct: 385 QLKTESERAKRQR 397 >gi|288957012|ref|YP_003447353.1| radical SAM enzyme [Azospirillum sp. B510] gi|288909320|dbj|BAI70809.1| radical SAM enzyme [Azospirillum sp. B510] Length = 396 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 211/368 (57%), Positives = 268/368 (72%), Gaps = 18/368 (4%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 +++L+G+ REELE +L +G+ + R Q+W WIY RG DF M+ +++ VR L Sbjct: 27 RKNLVGLSREELEAEMLAVGLE----KFRARQLWHWIYHRGSTDFAEMTTLAKPVREKLA 82 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + P +V + S DGTRKWLLR P E+E+V+IPE+ RGTLCVSSQVGC+ Sbjct: 83 DTHIVARPTVVTDLKSADGTRKWLLRMPD-----GQEVESVHIPEEDRGTLCVSSQVGCT 137 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTC FC+TGTQ+LVRNL A EI+ QV+LAR +LG++P P GR +SNIVMM Sbjct: 138 LTCRFCHTGTQRLVRNLDAAEIVAQVMLARDMLGEWPA---------PPDGRMLSNIVMM 188 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N+DNV K+L I D G+S SKRRITLSTSG VP + R G+E+ V LA+SLHA Sbjct: 189 GMGEPLFNYDNVAKALKIVMDGDGISISKRRITLSTSGVVPMMERCGQELNVNLAVSLHA 248 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V+++LRNI++PINRKYPL L++ACR YPGLSNARRITFEYVMLKG+ND+P DA L+K+ Sbjct: 249 VTDELRNIIMPINRKYPLRELMEACRTYPGLSNARRITFEYVMLKGVNDTPADARALVKL 308 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+GIPAKINLIPFN WPG Y S + I F + + +GY+SP+RTPRG DI+AACGQL Sbjct: 309 LEGIPAKINLIPFNEWPGAPYERSTARAIQLFGDIVNNAGYASPVRTPRGEDIMAACGQL 368 Query: 366 KSLSKRIP 373 KS S R+ Sbjct: 369 KSASLRLT 376 >gi|83594658|ref|YP_428410.1| hypothetical protein Rru_A3329 [Rhodospirillum rubrum ATCC 11170] gi|123753053|sp|Q2RP22|RLMN_RHORT RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|83577572|gb|ABC24123.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170] Length = 428 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 197/378 (52%), Positives = 250/378 (66%), Gaps = 17/378 (4%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+G+ REE+ L +G R Q+W W+Y RG DF M+ + +R L + Sbjct: 48 VNLVGLSREEIAALLRDMG----EKPFRAKQLWHWVYHRGETDFSAMTTLGTPLRAKLAE 103 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + P +V E+ S DGTRKWLLRFP E ETVYIPE RG LCVSSQVGC+L Sbjct: 104 TCVVARPHVVREQRSEDGTRKWLLRFPD-----GNEAETVYIPEDDRGALCVSSQVGCTL 158 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 TC FC+TGTQ LVRNLTA EI+ Q + AR G++P D R++SNIV+MG Sbjct: 159 TCRFCHTGTQLLVRNLTAHEIVGQFMAARDAYGEWPSPTD--------ESRQLSNIVLMG 210 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N+DNV K++ I D+ G++ S+RRITLSTSG VP I R G E+GV LA+SLHA Sbjct: 211 MGEPLYNYDNVAKAIGILLDNEGIAVSRRRITLSTSGVVPMIRRCGAELGVNLAVSLHAA 270 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 +++R+ ++PINRKYPL L+ ACR YPG SNARRITFEYVMLKG+NDS DA LIK++ Sbjct: 271 RDEIRDEIMPINRKYPLAELMAACREYPGASNARRITFEYVMLKGVNDSEADARALIKLV 330 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +G+P K NLIPFNPWPG + C + I F+ + +GY++PIR PRG DILAACGQL+ Sbjct: 331 EGVPCKFNLIPFNPWPGSGFECPPIRHIERFANILFEAGYTAPIRMPRGRDILAACGQLR 390 Query: 367 SLSKRIPKVPRQEMQITG 384 S S R + G Sbjct: 391 SDSLRERASLHKARLAAG 408 >gi|113969569|ref|YP_733362.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp. MR-4] gi|122943998|sp|Q0HKW2|RLMN_SHESM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|113884253|gb|ABI38305.1| radical SAM enzyme, Cfr family [Shewanella sp. MR-4] Length = 373 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 164/385 (42%), Positives = 223/385 (57%), Gaps = 25/385 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+ + +G R Q+ KWIY G+ DF+ M++I++ +R L Sbjct: 4 KKINLLDLDRKAMRALFADLG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I+ PEI + S DGT K+ + +G E+ETVYIPE R TLCVSSQVGC Sbjct: 60 AARCEIVAPEISSYQKSADGTIKFAI-----HVGEGQEVETVYIPEDDRATLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ Q+ LG + R I+N+VM Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLG----------FAKDTGERPITNVVM 164 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + ++G+ + V LA+S+H Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIH 224 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302 A +++LR+ILVP+N+KYPL+ + R Y SN R+T EYVML INDS A L Sbjct: 225 APNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHEL 284 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +++K P K+NLIPFNP+PG Y S I FS+ + G + +R RG DI AAC Sbjct: 285 AQLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344 Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383 GQL + +KR+ K QE QI+ Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369 >gi|194432102|ref|ZP_03064391.1| radical SAM enzyme, Cfr family [Shigella dysenteriae 1012] gi|194419631|gb|EDX35711.1| radical SAM enzyme, Cfr family [Shigella dysenteriae 1012] gi|332089738|gb|EGI94839.1| hypothetical protein SD15574_2919 [Shigella dysenteriae 155-74] Length = 384 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 159/382 (41%), Positives = 217/382 (56%), Gaps = 23/382 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+ Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + R I+N+VMM Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYERSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356 Query: 364 QLKSLS-KRIPKVPRQEMQITG 384 QL R + R+ MQ Sbjct: 357 QLAGDVIDRTKRTLRKRMQGEA 378 >gi|119713561|gb|ABL97613.1| radical SAM superfamily protein [uncultured marine bacterium EB0_39F01] Length = 390 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 206/376 (54%), Positives = 278/376 (73%), Gaps = 13/376 (3%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++IG+ R+ L AL +IG P + ++MRT+QIW+W+YV+G ++F+ M+++S++ R+LL Q Sbjct: 24 PNIIGLQRKALANALNEIGTPAKQIKMRTAQIWQWLYVKGAQNFEEMTNLSKDFRNLLVQ 83 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 +F+I PEIV +IS DGTRK+LLR + G E+E VYIPEK RGTLC+SSQ+GC+L Sbjct: 84 NFAITRPEIVTRQISKDGTRKYLLR-----VTGGHEVEAVYIPEKDRGTLCISSQIGCTL 138 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 TC+FC+TGTQKLVRNLT EI+ Q+L+AR L ++ R +SNIV+MG Sbjct: 139 TCTFCHTGTQKLVRNLTPAEIVGQILIARDDLDEWGKDA--------GQKRNVSNIVLMG 190 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N DNV+ ++ IA D+ G++ S+RRITLSTSG VP I R G EIG MLAIS HA Sbjct: 191 MGEPLYNTDNVRDAMLIAMDNEGIALSRRRITLSTSGVVPEIIRTGSEIGCMLAISFHAT 250 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++++R++LVPINRK+ + L++ACR+YP LSN+ RITFEYVMLK INDS DA L+ ++ Sbjct: 251 TDEVRDVLVPINRKHKIAELLEACRNYPKLSNSERITFEYVMLKNINDSDEDARRLVDLI 310 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 GIPAKINLIPFNPWPG Y SD I F + + ++GY+SPIR PRG DI+AACGQLK Sbjct: 311 SGIPAKINLIPFNPWPGSGYERSDWNRIEAFGDIVNKAGYASPIRRPRGEDIMAACGQLK 370 Query: 367 SLSKRIPKVPRQEMQI 382 S ++R+ K +Q + Sbjct: 371 SETQRVRKSAKQMAEE 386 >gi|120598175|ref|YP_962749.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp. W3-18-1] gi|120558268|gb|ABM24195.1| radical SAM enzyme, Cfr family [Shewanella sp. W3-18-1] Length = 399 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 166/385 (43%), Positives = 223/385 (57%), Gaps = 25/385 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+ + +G R Q+ KWIY G+ DF+ M++I++ +R L Sbjct: 30 KKINLLDLDRKAMRALFADLG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKL 85 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I+ PEI + S DGT K+ + +G E+ETVYIPE R TLCVSSQVGC Sbjct: 86 AARCEIVAPEISSFQKSTDGTIKFAI-----HVGEGQEVETVYIPEDDRATLCVSSQVGC 140 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ Q+ LG D R I+N+VM Sbjct: 141 ALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLGFAKDTGD----------RPITNVVM 190 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + ++G+ + V LA+S+H Sbjct: 191 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIH 250 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302 A +++LR+ILVP+N+KYPL+ + R Y SN R+T EYVML INDS A L Sbjct: 251 APNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHEL 310 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K++K P K+NLIPFNP+PG Y S I FS+ + G + +R RG DI AAC Sbjct: 311 AKLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 370 Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383 GQL + +KR+ K QE QI+ Sbjct: 371 GQLAGDIRDRTKRLAKKRMQENQIS 395 >gi|260869206|ref|YP_003235608.1| putative enzyme [Escherichia coli O111:H- str. 11128] gi|257765562|dbj|BAI37057.1| predicted enzyme [Escherichia coli O111:H- str. 11128] gi|323177359|gb|EFZ62947.1| hypothetical protein ECOK1180_3845 [Escherichia coli 1180] Length = 384 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 159/382 (41%), Positives = 217/382 (56%), Gaps = 23/382 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRDKLK 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+ Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + R I+N+VMM Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356 Query: 364 QLKSLS-KRIPKVPRQEMQITG 384 QL R + R+ MQ Sbjct: 357 QLAGDVIDRTKRTLRKRMQGEA 378 >gi|114046802|ref|YP_737352.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp. MR-7] gi|123326715|sp|Q0HX60|RLMN_SHESR RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|113888244|gb|ABI42295.1| radical SAM enzyme, Cfr family [Shewanella sp. MR-7] Length = 373 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 164/385 (42%), Positives = 223/385 (57%), Gaps = 25/385 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+ + +G R Q+ KWIY G+ DF+ M++I++ +R L Sbjct: 4 KKINLLDLDRKAMRALFADLG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I+ PEI + S DGT K+ + +G E+ETVYIPE R TLCVSSQVGC Sbjct: 60 AARCEIVAPEISSYQKSTDGTIKFAI-----HVGEGQEVETVYIPEDDRATLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ Q+ LG + R I+N+VM Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLG----------FAKDTGERPITNVVM 164 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + ++G+ + V LA+S+H Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIH 224 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302 A +++LR+ILVP+N+KYPL+ + R Y SN R+T EYVML INDS A L Sbjct: 225 APNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHEL 284 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +++K P K+NLIPFNP+PG Y S I FS+ + G + +R RG DI AAC Sbjct: 285 AQLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344 Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383 GQL + +KR+ K QE QI+ Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369 >gi|332639897|pdb|3RF9|A Chain A, X-Ray Structure Of Rlmn From Escherichia Coli gi|332639898|pdb|3RF9|B Chain B, X-Ray Structure Of Rlmn From Escherichia Coli Length = 404 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 159/382 (41%), Positives = 217/382 (56%), Gaps = 23/382 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+ Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + R I+N+VMM Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356 Query: 364 QLKSLS-KRIPKVPRQEMQITG 384 QL R + R+ MQ Sbjct: 357 QLAGDVIDRTKRTLRKRMQGEA 378 >gi|205829898|sp|A1RHQ0|RLMN_SHESW RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|319427125|gb|ADV55199.1| radical SAM enzyme, Cfr family [Shewanella putrefaciens 200] Length = 373 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 166/385 (43%), Positives = 223/385 (57%), Gaps = 25/385 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+ + +G R Q+ KWIY G+ DF+ M++I++ +R L Sbjct: 4 KKINLLDLDRKAMRALFADLG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I+ PEI + S DGT K+ + +G E+ETVYIPE R TLCVSSQVGC Sbjct: 60 AARCEIVAPEISSFQKSTDGTIKFAI-----HVGEGQEVETVYIPEDDRATLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ Q+ LG D R I+N+VM Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLGFAKDTGD----------RPITNVVM 164 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + ++G+ + V LA+S+H Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIH 224 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302 A +++LR+ILVP+N+KYPL+ + R Y SN R+T EYVML INDS A L Sbjct: 225 APNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHEL 284 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K++K P K+NLIPFNP+PG Y S I FS+ + G + +R RG DI AAC Sbjct: 285 AKLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344 Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383 GQL + +KR+ K QE QI+ Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369 >gi|117919675|ref|YP_868867.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp. ANA-3] gi|205829885|sp|A0KUJ2|RLMN_SHESA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|117612007|gb|ABK47461.1| radical SAM enzyme, Cfr family [Shewanella sp. ANA-3] Length = 373 Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 164/385 (42%), Positives = 223/385 (57%), Gaps = 25/385 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+ + +G R Q+ KWIY G+ DF+ M++I++ +R L Sbjct: 4 KKINLLDLDRKAMRALFADLG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I+ PEI + S DGT K+ + +G E+ETVYIPE R TLCVSSQVGC Sbjct: 60 AARCEIVAPEISSYQKSTDGTIKFAI-----HVGEGQEVETVYIPEDDRATLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ Q+ LG + R I+N+VM Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLG----------FAKETGERPITNVVM 164 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + ++G+ + V LA+S+H Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIH 224 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302 A +++LR+ILVP+N+KYPL+ + R Y SN R+T EYVML INDS A L Sbjct: 225 APNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHEL 284 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +++K P K+NLIPFNP+PG Y S I FS+ + G + +R RG DI AAC Sbjct: 285 AQLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344 Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383 GQL + +KR+ K QE QI+ Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369 >gi|220935219|ref|YP_002514118.1| radical SAM protein [Thioalkalivibrio sp. HL-EbGR7] gi|219996529|gb|ACL73131.1| radical SAM protein [Thioalkalivibrio sp. HL-EbGR7] Length = 376 Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 176/384 (45%), Positives = 230/384 (59%), Gaps = 20/384 (5%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M K +L+GM R++LE +G R Q+ KWI+ + DFQ M+D+S+ + Sbjct: 1 MTDSPKTNLLGMTRQQLEGFFTAMG----EKPFRAVQVLKWIHQHWVEDFQDMTDLSKAL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L Q I PE+V ++ S DGT KWLLR IETV+IPEK RGTLCVSS Sbjct: 57 RERLAQVAEIRAPEVVYDQASADGTHKWLLRL-----DDGNCIETVFIPEKDRGTLCVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC+L C+FC T Q RNL++ EI+ Q+ LA + + R +S Sbjct: 112 QVGCALDCTFCSTARQGFNRNLSSAEIVGQLWLANR------RLAPERTVAGKAPERVVS 165 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+V+MGMGEPL NFDNV ++ + D SKRR+TLSTSG VP + R+ E + V LA Sbjct: 166 NVVLMGMGEPLLNFDNVVDAMRLMLDDNAYGLSKRRVTLSTSGIVPAMDRLKETLDVALA 225 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP-GLSNARRITFEYVMLKGINDSPRDA 299 +SLHA ++ LR+ LVPINRKYP+ L+DACR Y + +RITFEYVML+G+NDSP A Sbjct: 226 VSLHAPNDALRDELVPINRKYPIAELLDACRRYVREERHHQRITFEYVMLEGVNDSPEHA 285 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 LI +L+ +P KINLIPFNP+P Y S I F E + +GY++ R RG DI Sbjct: 286 RQLIALLRDVPCKINLIPFNPFPETRYRRSGDAAIRRFQEMLANAGYTTITRRTRGDDID 345 Query: 360 AACGQL----KSLSKRIPKVPRQE 379 AACGQL S+R + R E Sbjct: 346 AACGQLVGKVADRSRRALRFARLE 369 >gi|114769816|ref|ZP_01447426.1| radical SAM superfamily protein [alpha proteobacterium HTCC2255] gi|114549521|gb|EAU52403.1| radical SAM superfamily protein [alpha proteobacterium HTCC2255] Length = 390 Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 206/376 (54%), Positives = 278/376 (73%), Gaps = 13/376 (3%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++IG+ R+ L AL +IG P + ++MRT+QIW+W+YV+G ++F+ M+++S++ R+LL Q Sbjct: 24 PNIIGLQRKALANALNEIGTPAKQIKMRTAQIWQWLYVKGAQNFEEMTNLSKDFRNLLVQ 83 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 +F+I PEIV +IS DGTRK+LLR + G E+E VYIPEK RGTLC+SSQ+GC+L Sbjct: 84 NFAITRPEIVTRQISKDGTRKYLLR-----VTGGHEVEAVYIPEKDRGTLCISSQIGCTL 138 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 TC+FC+TGTQKLVRNLT EI+ Q+L+AR L ++ R +SNIV+MG Sbjct: 139 TCTFCHTGTQKLVRNLTPAEIVGQILIARDDLDEWGKDA--------GQKRNVSNIVLMG 190 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N DNV+ ++ IA D+ G++ S+RRITLSTSG VP I R G EIG MLAIS HA Sbjct: 191 MGEPLYNTDNVRDAMLIAMDNEGIALSRRRITLSTSGVVPEIIRTGSEIGCMLAISFHAT 250 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++++R++LVPINRK+ + L++ACR+YP LSN+ RITFEYVMLK INDS DA L+ ++ Sbjct: 251 TDEVRDVLVPINRKHKIAELLEACRNYPKLSNSERITFEYVMLKNINDSDEDARRLVDLI 310 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 GIPAKINLIPFNPWPG Y SD I F + + ++GY+SPIR PRG DI+AACGQLK Sbjct: 311 SGIPAKINLIPFNPWPGSGYERSDWNRIEAFGDIVNKAGYASPIRRPRGEDIMAACGQLK 370 Query: 367 SLSKRIPKVPRQEMQI 382 S ++R+ K +Q + Sbjct: 371 SETQRVRKSAKQMAEE 386 >gi|16124389|ref|NP_418953.1| hypothetical protein CC_0134 [Caulobacter crescentus CB15] gi|221233072|ref|YP_002515508.1| radical SAM family enzyme [Caulobacter crescentus NA1000] gi|81621310|sp|Q9ABT6|RLMN_CAUCR RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807161|sp|B8GXM4|RLMN_CAUCN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|13421243|gb|AAK22121.1| conserved hypothetical protein [Caulobacter crescentus CB15] gi|220962244|gb|ACL93600.1| radical SAM family enzyme [Caulobacter crescentus NA1000] Length = 404 Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 197/380 (51%), Positives = 269/380 (70%), Gaps = 16/380 (4%) Query: 7 ESLIGMMREELEEALLKIGI-PQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 +L G+ R +L AL++ G+ +MR +QI++W++ RG+ DF MSD+++E R L Sbjct: 25 INLSGLTRPQLVAALVESGVVEHGKAKMRATQIFRWMHHRGVTDFADMSDVAKETRARLA 84 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGC 124 + F+I PEIV+ ++S DGTRKWL+R +E+E+VYIP R G LCVSSQVGC Sbjct: 85 EAFTIARPEIVERQVSKDGTRKWLIRMAP-----GIEVESVYIPGVGRAGALCVSSQVGC 139 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L CSFC+TGTQ LVRNLTA EI+ QV +A+ L ++P ++ R++SNIV Sbjct: 140 TLNCSFCHTGTQPLVRNLTAAEIVAQVQVAKDDLAEWPSDKE---------DRQLSNIVF 190 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N V ++ I SD+ G++ S+RRIT+STSG VP + ++G MLAISLH Sbjct: 191 MGMGEPLYNLGQVADAIEIISDNEGIAISRRRITVSTSGVVPMLEKLGSTTQAMLAISLH 250 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++ LR++LVP+N+KYP+ L+ R YPGLSNARR+TFEYVMLKG+NDSP +A L+K Sbjct: 251 ATNDPLRDVLVPLNKKYPIAELMAGIRAYPGLSNARRVTFEYVMLKGVNDSPEEARALVK 310 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 ++KGIPAKINLIPFNPWPG +Y CSD I F+ + ++GYSSPIRTPRG DILAACGQ Sbjct: 311 LIKGIPAKINLIPFNPWPGSDYQCSDWATIEAFAAILNKAGYSSPIRTPRGRDILAACGQ 370 Query: 365 LKSLSKRIPKVPRQEMQITG 384 LKS S+++ +++ + Sbjct: 371 LKSESEKVRASALRKLSLAA 390 >gi|329890963|ref|ZP_08269306.1| radical SAM superfamily protein [Brevundimonas diminuta ATCC 11568] gi|328846264|gb|EGF95828.1| radical SAM superfamily protein [Brevundimonas diminuta ATCC 11568] Length = 387 Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 205/379 (54%), Positives = 273/379 (72%), Gaps = 16/379 (4%) Query: 7 ESLIGMMREELEEALLKIGI-PQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 +L G+ R+EL +AL+ I P +MR SQ+W+WI+ G+ DF MSD++++ R L Sbjct: 18 VNLSGLTRDELRQALIDAEICPPEKAKMRASQVWRWIHHYGVTDFALMSDVAKDTRAKLA 77 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGC 124 + F++ PEIV+ ++S DGTRKWL+R +EIETVYIP+ R G LCVSSQVGC Sbjct: 78 EAFTLARPEIVERQVSKDGTRKWLIRTAP-----GIEIETVYIPDVGRAGALCVSSQVGC 132 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC+TGTQKLVRNLT EI+ QV +AR L ++P P R++SNIV Sbjct: 133 TLNCTFCHTGTQKLVRNLTTAEIVAQVQVARDDLDEWPS---------PKEDRRLSNIVF 183 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N D+V ++ I SD+ G++ S+RRIT+STSG VP + +GE MLAISLH Sbjct: 184 MGMGEPLYNLDHVANAIDIISDNEGIALSRRRITVSTSGVVPQLNALGERTAAMLAISLH 243 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++ LR+ LVP+N+KYPL+ L+ A R YPGLSNARR+TFEYVMLKG+NDSP +A LIK Sbjct: 244 ATNDPLRDQLVPLNKKYPLDQLMAAIRAYPGLSNARRVTFEYVMLKGVNDSPAEARALIK 303 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +++GIP+K+NLIPFNPWPG +Y CSD K I TF+ + ++GY+SPIRTPRG DILAACGQ Sbjct: 304 LIEGIPSKVNLIPFNPWPGTDYQCSDWKTIETFAAILNKAGYASPIRTPRGRDILAACGQ 363 Query: 365 LKSLSKRIPKVPRQEMQIT 383 LKS S+++ R + + Sbjct: 364 LKSESEKLRASARLKAERE 382 >gi|83945705|ref|ZP_00958050.1| hypothetical protein OA2633_10954 [Oceanicaulis alexandrii HTCC2633] gi|83850906|gb|EAP88766.1| hypothetical protein OA2633_10954 [Oceanicaulis alexandrii HTCC2633] Length = 391 Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 196/368 (53%), Positives = 266/368 (72%), Gaps = 16/368 (4%) Query: 7 ESLIGMMREELEEALLKIGI-PQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 +L+GM R +L +AL++ G+ ++ +MR Q+W+WIY G+ +F M+++S+++R L Sbjct: 18 IALVGMTRPQLRDALVEHGLVDEKKAKMRAEQLWRWIYHYGVTEFDQMTNVSKDLRQQLE 77 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGC 124 F++ PEI + ++S DGTRK+L+R + VE+ETV+IP +R G LCVSSQVGC Sbjct: 78 AKFTLARPEITERQVSVDGTRKYLIRMAS-----GVEVETVFIPAVARSGALCVSSQVGC 132 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC+TGTQ LVRNLTA EI+ QV++AR LG++P + R+I+NIV Sbjct: 133 TLNCTFCHTGTQPLVRNLTAAEIVAQVMIARDDLGEWPTSNE---------DRQITNIVF 183 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N D+V S+ + SD G+ +RR T+STSG VP I +GE MLAISLH Sbjct: 184 MGMGEPLYNLDHVSDSIDVISDHEGIGIGRRRTTVSTSGVVPKIPELGERTRSMLAISLH 243 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +++LRN LVP+N+KYP+ L+DA R YP LSN++R+TFEYVMLKG+NDS +A L+K Sbjct: 244 ATNDELRNELVPLNKKYPIAELMDAIRAYPDLSNSKRVTFEYVMLKGVNDSLAEARALVK 303 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGIPAKINLIPFNPWPG Y CSD I F++ + R+GY+SPIRTPRG DI AACGQ Sbjct: 304 LLKGIPAKINLIPFNPWPGSPYECSDWDQIEAFADVVNRAGYASPIRTPRGRDIFAACGQ 363 Query: 365 LKSLSKRI 372 LKS S++I Sbjct: 364 LKSESQKI 371 >gi|127512219|ref|YP_001093416.1| hypothetical protein Shew_1287 [Shewanella loihica PV-4] gi|205829882|sp|A3QCF9|RLMN_SHELP RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|126637514|gb|ABO23157.1| radical SAM enzyme, Cfr family [Shewanella loihica PV-4] Length = 373 Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 163/385 (42%), Positives = 225/385 (58%), Gaps = 25/385 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+ L ++G R Q+ KW+Y G+ DF+ M++I++ +R L Sbjct: 4 KKINLLDLDRKGLRALFTEMG----EKPFRADQLMKWLYHFGVSDFEQMTNINKVLRAKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 ++ PEI + S DGT K+ + +G E+ETVYIPE+ R TLCVSSQVGC Sbjct: 60 AARCEVVAPEISSYQKSADGTIKFAI-----NVGNGQEVETVYIPEEDRATLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ Q+ LG + R ISN+VM Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLG----------FQKETGERPISNVVM 164 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G S SKRR+T+STSG VP + +G+ + V LA+S+H Sbjct: 165 MGMGEPLLNLKNVMPAIDIMLDDFGFSLSKRRVTVSTSGVVPALDILGDNLDVALAVSIH 224 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302 A +++LR++LVP+N+KYPL+ + A R Y SN R+T EYVML INDS A L Sbjct: 225 APNDELRDVLVPVNKKYPLQEFLAAIRRYLAKSNANRGRVTLEYVMLDHINDSTDQAHEL 284 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +++K P KINLIPFNP+PG Y S I FS+ + G + +R RG DI AAC Sbjct: 285 AELMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344 Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383 GQL + +KR+ K Q+ QI+ Sbjct: 345 GQLAGDIRDRTKRLAKKRMQDSQIS 369 >gi|260598903|ref|YP_003211474.1| ribosomal RNA large subunit methyltransferase N [Cronobacter turicensis z3032] gi|260218080|emb|CBA32831.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter turicensis z3032] Length = 388 Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 161/380 (42%), Positives = 217/380 (57%), Gaps = 23/380 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+E+ E +G R Q+ KW+Y DF M+DI++ +R L Sbjct: 20 EKINLLDLNRQEMREFFKTLG----EKPFRADQVMKWMYHYCSDDFDEMTDINKVLRGKL 75 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC Sbjct: 76 KEVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGC 129 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNL EI+ QV A ++G + R I+N+VM Sbjct: 130 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AAKVTGQRPITNVVM 179 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 180 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 239 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L Sbjct: 240 APNDEIRDEIVPINKKYNIETFLAAVRRYLDKSNANQGRVTIEYVMLDHVNDGTEHAHQL 299 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AAC Sbjct: 300 AELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAAC 359 Query: 363 GQLKSLS-KRIPKVPRQEMQ 381 GQL R + R+ MQ Sbjct: 360 GQLAGDVIDRTKRTMRKRMQ 379 >gi|91792611|ref|YP_562262.1| hypothetical protein Sden_1253 [Shewanella denitrificans OS217] gi|123356968|sp|Q12PT7|RLMN_SHEDO RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|91714613|gb|ABE54539.1| conserved hypothetical protein [Shewanella denitrificans OS217] Length = 373 Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 169/385 (43%), Positives = 226/385 (58%), Gaps = 25/385 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+ L ++G R Q+ KWIY G+ DF+ M++I++ +R L Sbjct: 4 KKINLLDLDRKGLRALFTEMG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRSKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I+ PEI + S DGT K+ + +G E+ETVYIPE R TLCVSSQVGC Sbjct: 60 AERCVIVAPEIASFQKSADGTIKFAI-----NVGQGQEVETVYIPEDDRATLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC TG Q RNLT EI+ Q+ LG V + R I+N+VM Sbjct: 115 ALECTFCSTGQQGFNRNLTVSEIVGQIWRVAQFLG----------FVKTTGERPITNVVM 164 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + +G+ I V LA+S+H Sbjct: 165 MGMGEPLLNLKNVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDILGDSIDVALAVSIH 224 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302 A +++LR+ILVP+N+KYPL + R Y SN R+T EYVML INDS A L Sbjct: 225 APNDELRDILVPVNKKYPLAEFLGGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHEL 284 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K++K P K+NLIPFNP+PG Y S I FS+ + G++ +R RG DI AAC Sbjct: 285 AKLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAAC 344 Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383 GQL + +KR+ K QE QI+ Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369 >gi|218548046|ref|YP_002381837.1| ribosomal RNA large subunit methyltransferase N [Escherichia fergusonii ATCC 35469] gi|254807182|sp|B7LKC1|RLMN_ESCF3 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|218355587|emb|CAQ88198.1| putative Fe-S containing enzyme [Escherichia fergusonii ATCC 35469] gi|324113011|gb|EGC06987.1| cfr family protein radical SAM enzyme [Escherichia fergusonii B253] gi|325496450|gb|EGC94309.1| ribosomal RNA large subunit methyltransferase N [Escherichia fergusonii ECD227] Length = 384 Score = 471 bits (1213), Expect = e-131, Method: Composition-based stats. Identities = 159/382 (41%), Positives = 217/382 (56%), Gaps = 23/382 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+ Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + R I+N+VMM Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356 Query: 364 QLKSLS-KRIPKVPRQEMQITG 384 QL R + R+ MQ Sbjct: 357 QLAGDVIDRTKRTLRKRMQGEA 378 >gi|170767629|ref|ZP_02902082.1| radical SAM enzyme, Cfr family [Escherichia albertii TW07627] gi|170123963|gb|EDS92894.1| radical SAM enzyme, Cfr family [Escherichia albertii TW07627] Length = 384 Score = 471 bits (1213), Expect = e-131, Method: Composition-based stats. Identities = 159/382 (41%), Positives = 217/382 (56%), Gaps = 23/382 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+ Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + R I+N+VMM Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356 Query: 364 QLKSLS-KRIPKVPRQEMQITG 384 QL R + R+ MQ Sbjct: 357 QLAGDVIDRTKRTLRKRMQGEA 378 >gi|16130442|ref|NP_417012.1| 23S rRNA m(2)A2503 methyltransferase, SAM-dependen [Escherichia coli str. K-12 substr. MG1655] gi|74313043|ref|YP_311462.1| ribosomal RNA large subunit methyltransferase N [Shigella sonnei Ss046] gi|82544966|ref|YP_408913.1| ribosomal RNA large subunit methyltransferase N [Shigella boydii Sb227] gi|82777902|ref|YP_404251.1| hypothetical protein SDY_2713 [Shigella dysenteriae Sd197] gi|89109323|ref|AP_003103.1| hypothetical protein [Escherichia coli str. K-12 substr. W3110] gi|91211843|ref|YP_541829.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli UTI89] gi|110642682|ref|YP_670412.1| hypothetical protein ECP_2522 [Escherichia coli 536] gi|117624746|ref|YP_853659.1| hypothetical protein APECO1_4007 [Escherichia coli APEC O1] gi|157157838|ref|YP_001463839.1| hypothetical protein EcE24377A_2801 [Escherichia coli E24377A] gi|170019200|ref|YP_001724154.1| hypothetical protein EcolC_1160 [Escherichia coli ATCC 8739] gi|170082127|ref|YP_001731447.1| hypothetical protein ECDH10B_2683 [Escherichia coli str. K-12 substr. DH10B] gi|170683806|ref|YP_001744705.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli SMS-3-5] gi|187731368|ref|YP_001881308.1| ribosomal RNA large subunit methyltransferase N [Shigella boydii CDC 3083-94] gi|188491812|ref|ZP_02999082.1| radical SAM enzyme, Cfr family [Escherichia coli 53638] gi|191167679|ref|ZP_03029488.1| radical SAM enzyme, Cfr family [Escherichia coli B7A] gi|191172618|ref|ZP_03034157.1| radical SAM enzyme, Cfr family [Escherichia coli F11] gi|193064109|ref|ZP_03045194.1| radical SAM enzyme, Cfr family [Escherichia coli E22] gi|194427328|ref|ZP_03059878.1| radical SAM enzyme, Cfr family [Escherichia coli B171] gi|194437563|ref|ZP_03069659.1| radical SAM enzyme, Cfr family [Escherichia coli 101-1] gi|209919994|ref|YP_002294078.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli SE11] gi|215487867|ref|YP_002330298.1| hypothetical protein E2348C_2800 [Escherichia coli O127:H6 str. E2348/69] gi|218555042|ref|YP_002387955.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli IAI1] gi|218559443|ref|YP_002392356.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli S88] gi|218690637|ref|YP_002398849.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli ED1a] gi|218696144|ref|YP_002403811.1| hypothetical protein EC55989_2802 [Escherichia coli 55989] gi|218701027|ref|YP_002408656.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli IAI39] gi|237705027|ref|ZP_04535508.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp. 3_2_53FAA] gi|238901682|ref|YP_002927478.1| putative enzyme [Escherichia coli BW2952] gi|253772589|ref|YP_003035420.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162491|ref|YP_003045599.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli B str. REL606] gi|256017335|ref|ZP_05431200.1| hypothetical protein ShiD9_00370 [Shigella sp. D9] gi|256021797|ref|ZP_05435662.1| hypothetical protein E4_00375 [Escherichia sp. 4_1_40B] gi|260845147|ref|YP_003222925.1| putative enzyme [Escherichia coli O103:H2 str. 12009] gi|260856611|ref|YP_003230502.1| putative enzyme [Escherichia coli O26:H11 str. 11368] gi|293410931|ref|ZP_06654507.1| cfr family radical SAM enzyme [Escherichia coli B354] gi|293446870|ref|ZP_06663292.1| cfr family radical SAM enzyme [Escherichia coli B088] gi|300817713|ref|ZP_07097928.1| radical SAM enzyme, Cfr family [Escherichia coli MS 107-1] gi|300820813|ref|ZP_07100963.1| radical SAM enzyme, Cfr family [Escherichia coli MS 119-7] gi|300904309|ref|ZP_07122166.1| radical SAM enzyme, Cfr family [Escherichia coli MS 84-1] gi|300927120|ref|ZP_07142868.1| radical SAM enzyme, Cfr family [Escherichia coli MS 182-1] gi|300930157|ref|ZP_07145578.1| radical SAM enzyme, Cfr family [Escherichia coli MS 187-1] gi|300940232|ref|ZP_07154830.1| radical SAM enzyme, Cfr family [Escherichia coli MS 21-1] gi|300951778|ref|ZP_07165593.1| radical SAM enzyme, Cfr family [Escherichia coli MS 116-1] gi|300958853|ref|ZP_07170961.1| radical SAM enzyme, Cfr family [Escherichia coli MS 175-1] gi|300998073|ref|ZP_07181933.1| radical SAM enzyme, Cfr family [Escherichia coli MS 200-1] gi|301022377|ref|ZP_07186264.1| radical SAM enzyme, Cfr family [Escherichia coli MS 196-1] gi|301024749|ref|ZP_07188389.1| radical SAM enzyme, Cfr family [Escherichia coli MS 69-1] gi|301302874|ref|ZP_07209002.1| radical SAM enzyme, Cfr family [Escherichia coli MS 124-1] gi|301330392|ref|ZP_07223034.1| radical SAM enzyme, Cfr family [Escherichia coli MS 78-1] gi|301648272|ref|ZP_07248015.1| radical SAM enzyme, Cfr family [Escherichia coli MS 146-1] gi|306814413|ref|ZP_07448575.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli NC101] gi|307139152|ref|ZP_07498508.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli H736] gi|307312488|ref|ZP_07592121.1| radical SAM enzyme, Cfr family [Escherichia coli W] gi|309784732|ref|ZP_07679365.1| UPF0063 protein yfgB [Shigella dysenteriae 1617] gi|309794436|ref|ZP_07688859.1| radical SAM enzyme, Cfr family [Escherichia coli MS 145-7] gi|312965433|ref|ZP_07779665.1| UPF0063 protein yfgB [Escherichia coli 2362-75] gi|331643137|ref|ZP_08344272.1| radical SAM enzyme, Cfr family [Escherichia coli H736] gi|331648214|ref|ZP_08349304.1| radical SAM enzyme, Cfr family [Escherichia coli M605] gi|331653945|ref|ZP_08354946.1| radical SAM enzyme, Cfr family [Escherichia coli M718] gi|331658662|ref|ZP_08359606.1| radical SAM enzyme, Cfr family [Escherichia coli TA206] gi|331664080|ref|ZP_08364990.1| radical SAM enzyme, Cfr family [Escherichia coli TA143] gi|331669263|ref|ZP_08370111.1| radical SAM enzyme, Cfr family [Escherichia coli TA271] gi|331673972|ref|ZP_08374735.1| radical SAM enzyme, Cfr family [Escherichia coli TA280] gi|331678508|ref|ZP_08379183.1| radical SAM enzyme, Cfr family [Escherichia coli H591] gi|331684165|ref|ZP_08384761.1| radical SAM enzyme, Cfr family [Escherichia coli H299] gi|332278330|ref|ZP_08390743.1| ribosomal RNA large subunit methyltransferase N [Shigella sp. D9] gi|549552|sp|P36979|RLMN_ECOLI RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123084401|sp|Q1R8L6|RLMN_ECOUT RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123147826|sp|Q0TEW8|RLMN_ECOL5 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123728531|sp|Q32D45|RLMN_SHIDS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123755559|sp|Q31XX3|RLMN_SHIBS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123773477|sp|Q3YZ35|RLMN_SHISS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829749|sp|A7ZPW0|RLMN_ECO24 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829750|sp|B1XAZ2|RLMN_ECODH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829752|sp|A1AE55|RLMN_ECOK1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829753|sp|B1IWE4|RLMN_ECOLC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829754|sp|B1LNH2|RLMN_ECOSM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829888|sp|B2TXU2|RLMN_SHIB3 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807172|sp|B7UGW3|RLMN_ECO27 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807173|sp|B7MI02|RLMN_ECO45 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807174|sp|B7LDA9|RLMN_ECO55 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807176|sp|B7NRG7|RLMN_ECO7I RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807177|sp|B7N304|RLMN_ECO81 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807178|sp|B7M7M1|RLMN_ECO8A RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807180|sp|B6I589|RLMN_ECOSE RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|259491986|sp|C4ZX92|RLMN_ECOBW RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|493519|gb|AAA21359.1| unknown [Escherichia coli] gi|1788865|gb|AAC75570.1| 23S rRNA m(2)A2503 methyltransferase, SAM-dependen [Escherichia coli str. K-12 substr. MG1655] gi|1799916|dbj|BAA16404.1| hypothetical protein [Escherichia coli str. K12 substr. W3110] gi|73856520|gb|AAZ89227.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|81242050|gb|ABB62760.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|81246377|gb|ABB67085.1| conserved hypothetical protein [Shigella boydii Sb227] gi|91073417|gb|ABE08298.1| hypothetical protein UTI89_C2838 [Escherichia coli UTI89] gi|110344274|gb|ABG70511.1| hypothetical protein YfgB (putative Fe-S-cluster redox enzyme) [Escherichia coli 536] gi|115513870|gb|ABJ01945.1| putative Fe-S-cluster redox enzyme [Escherichia coli APEC O1] gi|157079868|gb|ABV19576.1| radical SAM enzyme, Cfr family [Escherichia coli E24377A] gi|169754128|gb|ACA76827.1| radical SAM enzyme, Cfr family [Escherichia coli ATCC 8739] gi|169889962|gb|ACB03669.1| predicted enzyme [Escherichia coli str. K-12 substr. DH10B] gi|170521524|gb|ACB19702.1| radical SAM enzyme, Cfr family [Escherichia coli SMS-3-5] gi|187428360|gb|ACD07634.1| radical SAM enzyme, Cfr family [Shigella boydii CDC 3083-94] gi|188487011|gb|EDU62114.1| radical SAM enzyme, Cfr family [Escherichia coli 53638] gi|190902278|gb|EDV62018.1| radical SAM enzyme, Cfr family [Escherichia coli B7A] gi|190907091|gb|EDV66691.1| radical SAM enzyme, Cfr family [Escherichia coli F11] gi|192929344|gb|EDV82953.1| radical SAM enzyme, Cfr family [Escherichia coli E22] gi|194414649|gb|EDX30921.1| radical SAM enzyme, Cfr family [Escherichia coli B171] gi|194423369|gb|EDX39360.1| radical SAM enzyme, Cfr family [Escherichia coli 101-1] gi|209913253|dbj|BAG78327.1| conserved hypothetical protein [Escherichia coli SE11] gi|215265939|emb|CAS10348.1| predicted enzyme [Escherichia coli O127:H6 str. E2348/69] gi|218352876|emb|CAU98675.1| putative Fe-S containing enzyme [Escherichia coli 55989] gi|218361810|emb|CAQ99409.1| putative Fe-S containing enzyme [Escherichia coli IAI1] gi|218366212|emb|CAR03960.1| putative Fe-S containing enzyme [Escherichia coli S88] gi|218371013|emb|CAR18841.1| putative Fe-S containing enzyme [Escherichia coli IAI39] gi|218428201|emb|CAV17847.1| putative Fe-S containing enzyme [Escherichia coli ED1a] gi|222034228|emb|CAP76969.1| UPF0063 protein yfgB [Escherichia coli LF82] gi|226901393|gb|EEH87652.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp. 3_2_53FAA] gi|238862352|gb|ACR64350.1| predicted enzyme [Escherichia coli BW2952] gi|242378115|emb|CAQ32888.1| 23S rRNA m[2]A2503 methyltransferase [Escherichia coli BL21(DE3)] gi|253323633|gb|ACT28235.1| radical SAM enzyme, Cfr family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974392|gb|ACT40063.1| predicted enzyme [Escherichia coli B str. REL606] gi|253978559|gb|ACT44229.1| predicted enzyme [Escherichia coli BL21(DE3)] gi|257755260|dbj|BAI26762.1| predicted enzyme [Escherichia coli O26:H11 str. 11368] gi|257760294|dbj|BAI31791.1| predicted enzyme [Escherichia coli O103:H2 str. 12009] gi|260448403|gb|ACX38825.1| radical SAM enzyme, Cfr family [Escherichia coli DH1] gi|281179571|dbj|BAI55901.1| conserved hypothetical protein [Escherichia coli SE15] gi|284922467|emb|CBG35554.1| radical SAM superfamily protein [Escherichia coli 042] gi|291323700|gb|EFE63128.1| cfr family radical SAM enzyme [Escherichia coli B088] gi|291471399|gb|EFF13883.1| cfr family radical SAM enzyme [Escherichia coli B354] gi|294492482|gb|ADE91238.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli IHE3034] gi|299881276|gb|EFI89487.1| radical SAM enzyme, Cfr family [Escherichia coli MS 196-1] gi|300304052|gb|EFJ58572.1| radical SAM enzyme, Cfr family [Escherichia coli MS 200-1] gi|300314505|gb|EFJ64289.1| radical SAM enzyme, Cfr family [Escherichia coli MS 175-1] gi|300396418|gb|EFJ79956.1| radical SAM enzyme, Cfr family [Escherichia coli MS 69-1] gi|300403741|gb|EFJ87279.1| radical SAM enzyme, Cfr family [Escherichia coli MS 84-1] gi|300416890|gb|EFK00201.1| radical SAM enzyme, Cfr family [Escherichia coli MS 182-1] gi|300448975|gb|EFK12595.1| radical SAM enzyme, Cfr family [Escherichia coli MS 116-1] gi|300454928|gb|EFK18421.1| radical SAM enzyme, Cfr family [Escherichia coli MS 21-1] gi|300461963|gb|EFK25456.1| radical SAM enzyme, Cfr family [Escherichia coli MS 187-1] gi|300526566|gb|EFK47635.1| radical SAM enzyme, Cfr family [Escherichia coli MS 119-7] gi|300529701|gb|EFK50763.1| radical SAM enzyme, Cfr family [Escherichia coli MS 107-1] gi|300841809|gb|EFK69569.1| radical SAM enzyme, Cfr family [Escherichia coli MS 124-1] gi|300843621|gb|EFK71381.1| radical SAM enzyme, Cfr family [Escherichia coli MS 78-1] gi|301073659|gb|EFK88465.1| radical SAM enzyme, Cfr family [Escherichia coli MS 146-1] gi|305851807|gb|EFM52259.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli NC101] gi|306907411|gb|EFN37915.1| radical SAM enzyme, Cfr family [Escherichia coli W] gi|307625927|gb|ADN70231.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli UM146] gi|308121892|gb|EFO59154.1| radical SAM enzyme, Cfr family [Escherichia coli MS 145-7] gi|308927102|gb|EFP72576.1| UPF0063 protein yfgB [Shigella dysenteriae 1617] gi|309702849|emb|CBJ02180.1| radical SAM superfamily protein [Escherichia coli ETEC H10407] gi|312289853|gb|EFR17741.1| UPF0063 protein yfgB [Escherichia coli 2362-75] gi|312947094|gb|ADR27921.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli O83:H1 str. NRG 857C] gi|315061836|gb|ADT76163.1| radical SAM protein [Escherichia coli W] gi|315137141|dbj|BAJ44300.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli DH1] gi|315256537|gb|EFU36505.1| radical SAM enzyme, Cfr family [Escherichia coli MS 85-1] gi|315288069|gb|EFU47469.1| radical SAM enzyme, Cfr family [Escherichia coli MS 110-3] gi|315300476|gb|EFU59705.1| radical SAM enzyme, Cfr family [Escherichia coli MS 16-3] gi|315615776|gb|EFU96408.1| UPF0063 protein yfgB [Escherichia coli 3431] gi|320175080|gb|EFW50193.1| Ribosomal RNA large subunit methyltransferase N [Shigella dysenteriae CDC 74-1112] gi|320180507|gb|EFW55438.1| Ribosomal RNA large subunit methyltransferase N [Shigella boydii ATCC 9905] gi|320185217|gb|EFW59997.1| Ribosomal RNA large subunit methyltransferase N [Shigella flexneri CDC 796-83] gi|320196354|gb|EFW70978.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli WV_060327] gi|320200081|gb|EFW74670.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli EC4100B] gi|323156172|gb|EFZ42331.1| hypothetical protein ECEPECA14_1949 [Escherichia coli EPECa14] gi|323159387|gb|EFZ45372.1| hypothetical protein ECE128010_4438 [Escherichia coli E128010] gi|323169039|gb|EFZ54716.1| hypothetical protein SS53G_0580 [Shigella sonnei 53G] gi|323170210|gb|EFZ55863.1| hypothetical protein ECLT68_5098 [Escherichia coli LT-68] gi|323184422|gb|EFZ69797.1| hypothetical protein ECOK1357_2143 [Escherichia coli 1357] gi|323188365|gb|EFZ73657.1| hypothetical protein ECRN5871_3471 [Escherichia coli RN587/1] gi|323377583|gb|ADX49851.1| radical SAM enzyme, Cfr family [Escherichia coli KO11] gi|323936410|gb|EGB32700.1| cfr family protein radical SAM enzyme [Escherichia coli E1520] gi|323941221|gb|EGB37406.1| cfr family protein radical SAM enzyme [Escherichia coli E482] gi|323944739|gb|EGB40806.1| cfr family protein radical SAM enzyme [Escherichia coli H120] gi|323949177|gb|EGB45068.1| cfr family protein radical SAM enzyme [Escherichia coli H252] gi|323955758|gb|EGB51516.1| cfr family protein radical SAM enzyme [Escherichia coli H263] gi|323961333|gb|EGB56945.1| cfr family protein radical SAM enzyme [Escherichia coli H489] gi|323967965|gb|EGB63377.1| cfr family protein radical SAM enzyme [Escherichia coli M863] gi|323971070|gb|EGB66318.1| cfr family protein radical SAM enzyme [Escherichia coli TA007] gi|323977300|gb|EGB72386.1| cfr family protein radical SAM enzyme [Escherichia coli TW10509] gi|324008525|gb|EGB77744.1| radical SAM enzyme, Cfr family [Escherichia coli MS 57-2] gi|324011226|gb|EGB80445.1| radical SAM enzyme, Cfr family [Escherichia coli MS 60-1] gi|324020077|gb|EGB89296.1| radical SAM enzyme, Cfr family [Escherichia coli MS 117-3] gi|324118139|gb|EGC12036.1| cfr family protein radical SAM enzyme [Escherichia coli E1167] gi|327252224|gb|EGE63896.1| hypothetical protein ECSTEC7V_3072 [Escherichia coli STEC_7v] gi|330912292|gb|EGH40802.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli AA86] gi|331039935|gb|EGI12155.1| radical SAM enzyme, Cfr family [Escherichia coli H736] gi|331043074|gb|EGI15214.1| radical SAM enzyme, Cfr family [Escherichia coli M605] gi|331048794|gb|EGI20870.1| radical SAM enzyme, Cfr family [Escherichia coli M718] gi|331054327|gb|EGI26354.1| radical SAM enzyme, Cfr family [Escherichia coli TA206] gi|331059879|gb|EGI31856.1| radical SAM enzyme, Cfr family [Escherichia coli TA143] gi|331064457|gb|EGI36368.1| radical SAM enzyme, Cfr family [Escherichia coli TA271] gi|331069245|gb|EGI40637.1| radical SAM enzyme, Cfr family [Escherichia coli TA280] gi|331074968|gb|EGI46288.1| radical SAM enzyme, Cfr family [Escherichia coli H591] gi|331079117|gb|EGI50319.1| radical SAM enzyme, Cfr family [Escherichia coli H299] gi|332092803|gb|EGI97872.1| hypothetical protein SB359474_2930 [Shigella boydii 3594-74] gi|332100682|gb|EGJ04028.1| ribosomal RNA large subunit methyltransferase N [Shigella sp. D9] gi|332344389|gb|AEE57723.1| conserved hypothetical protein [Escherichia coli UMNK88] Length = 384 Score = 471 bits (1213), Expect = e-131, Method: Composition-based stats. Identities = 159/382 (41%), Positives = 217/382 (56%), Gaps = 23/382 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+ Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + R I+N+VMM Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356 Query: 364 QLKSLS-KRIPKVPRQEMQITG 384 QL R + R+ MQ Sbjct: 357 QLAGDVIDRTKRTLRKRMQGEA 378 >gi|24374826|ref|NP_718869.1| hypothetical protein SO_3315 [Shewanella oneidensis MR-1] gi|81589118|sp|Q8EC29|RLMN_SHEON RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|24349512|gb|AAN56313.1|AE015769_9 conserved hypothetical protein TIGR00048 [Shewanella oneidensis MR-1] Length = 373 Score = 471 bits (1212), Expect = e-131, Method: Composition-based stats. Identities = 164/385 (42%), Positives = 223/385 (57%), Gaps = 25/385 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+ + +G R Q+ KWIY G+ DF+ M++I++ +R L Sbjct: 4 KKINLLDLDRKAMRALFADLG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I+ PEI + S DGT K+ + +G E+ETVYIPE R TLCVSSQVGC Sbjct: 60 AARCEIVAPEISGYQKSADGTIKFAI-----HVGEGQEVETVYIPEDDRATLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ Q+ LG + R I+N+VM Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLG----------FAKETGERPITNVVM 164 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + ++G+ + V LA+S+H Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIH 224 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302 A +++LR+ILVP+N+KYPL+ + R Y SN R+T EYVML INDS A L Sbjct: 225 APNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHEL 284 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +++K P K+NLIPFNP+PG Y S I FS+ + G + +R RG DI AAC Sbjct: 285 AQLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344 Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383 GQL + +KR+ K QE QI+ Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369 >gi|119775502|ref|YP_928242.1| ribosomal RNA large subunit methyltransferase N [Shewanella amazonensis SB2B] gi|205829877|sp|A1S866|RLMN_SHEAM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|119768002|gb|ABM00573.1| conserved hypothetical protein [Shewanella amazonensis SB2B] Length = 373 Score = 471 bits (1212), Expect = e-131, Method: Composition-based stats. Identities = 167/385 (43%), Positives = 224/385 (58%), Gaps = 25/385 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + L+ L ++G R QI +WIY G+ DF+ M++I++ +R L Sbjct: 4 KKINLLDLDLPGLKALLTEMG----EKPFRAQQIMQWIYHFGVSDFEQMTNINKAMRAKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I+ PEI + S DGT K+ + +G E+ETVYIPE R TLCVSSQVGC Sbjct: 60 AARCEIVAPEITSYQKSSDGTIKFAI-----NVGQGQEVETVYIPEDDRATLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ Q+ LG + R ISN+VM Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLG----------FQKETGERPISNVVM 164 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV +++I D G SKRR+TLSTSG VP + ++G+ I V LA+S+H Sbjct: 165 MGMGEPLLNLANVVPAMNIMLDDYGFGLSKRRVTLSTSGVVPALDKLGDVIDVALAVSIH 224 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302 A +++LR++LVPIN+KYPL+ + A R Y SN R+T EYVML INDS A L Sbjct: 225 APNDELRDVLVPINKKYPLQEFLAAIRRYLEKSNANRGRVTLEYVMLDHINDSTDQAHEL 284 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K++K P KINLIPFNP+PG Y S I F++ + + +R RG DI AAC Sbjct: 285 AKLMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFAKVLMEYDLTVIVRKTRGDDIDAAC 344 Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383 GQL + +KR+ K QE QI+ Sbjct: 345 GQLAGDIRDRTKRLAKKRMQESQIS 369 >gi|170725898|ref|YP_001759924.1| ribosomal RNA large subunit methyltransferase N [Shewanella woodyi ATCC 51908] gi|205829887|sp|B1KKI9|RLMN_SHEWM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|169811245|gb|ACA85829.1| radical SAM enzyme, Cfr family [Shewanella woodyi ATCC 51908] Length = 373 Score = 471 bits (1212), Expect = e-131, Method: Composition-based stats. Identities = 167/385 (43%), Positives = 225/385 (58%), Gaps = 25/385 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+ L ++G R Q+ KWIY G+ DF M++I++ +R L Sbjct: 4 KKINLLDLDRKGLRALFTEMG----EKPFRADQLMKWIYHFGVSDFDEMNNINKALRAKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 N I+ PEI + S DGT K+ + +G E+ETVYIPE R TLCVSSQVGC Sbjct: 60 NARCEIVAPEISSFQKSEDGTIKFAI-----NVGQGQEVETVYIPEDDRATLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV +G V + R I+N+VM Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIIGQVWRVADFIG----------FVKETGERPITNVVM 164 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G S SKRR+T+STSG VP + ++G+ + V LA+S+H Sbjct: 165 MGMGEPLLNLKNVIPAMDIMLDDFGFSLSKRRVTVSTSGVVPALDKLGDALDVALAVSIH 224 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302 A +++LR++LVP+N+KYPLE + R Y SN R+T EYVML INDS A L Sbjct: 225 APNDELRDVLVPVNKKYPLEEFLGGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHEL 284 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K++K P KINLIPFNP+PG Y S I FS+ + G + +R RG DI AAC Sbjct: 285 AKLMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344 Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383 GQL + +KR+ K Q+ QI+ Sbjct: 345 GQLAGDIRDRTKRLAKKRMQDSQIS 369 >gi|209965840|ref|YP_002298755.1| radical SAM enzyme, Cfr family [Rhodospirillum centenum SW] gi|209959306|gb|ACI99942.1| radical SAM enzyme, Cfr family [Rhodospirillum centenum SW] Length = 399 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 205/372 (55%), Positives = 269/372 (72%), Gaps = 17/372 (4%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + +L+G+ RE+LE + G + R Q+W+WIY RG+ DF M+++++ R L Sbjct: 18 RVNLVGLSREDLEAEFARAGFE----KFRARQVWQWIYNRGVTDFAAMTNLAKPARERLA 73 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +H+ I P V + S DGTRKWL R P EIETV+IPE+ RGTLCVSSQVGC+ Sbjct: 74 EHYVIERPLAVKDLQSDDGTRKWLCRMP----ADGQEIETVHIPEEDRGTLCVSSQVGCT 129 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 +TC FC+TGTQ+LVRNLT+ EI+ QV+LAR LG++P P+ GR +SNIVMM Sbjct: 130 MTCRFCHTGTQRLVRNLTSAEIVGQVMLARDHLGEWPS---------PAEGRMLSNIVMM 180 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N++NV ++L I D G++ SKRRITLSTSG VP + R G E+GV LA+SLHA Sbjct: 181 GMGEPLFNYENVARALKIVMDGEGIAISKRRITLSTSGVVPMMRRCGAELGVNLAVSLHA 240 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V+++LRN +VPIN+KYP+ L+DA R YPGL+NARR+T+EYVMLKG+NDS DA L+++ Sbjct: 241 VTDELRNRIVPINKKYPIAELMDAVRTYPGLNNARRVTWEYVMLKGVNDSLADARALVRL 300 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 ++GIP+KINLIPFNPWPG + CSD IV FS+ + +GY+SPIR PRG DI+AACGQL Sbjct: 301 IRGIPSKINLIPFNPWPGAPFECSDWDQIVRFSDFVNDAGYASPIRAPRGKDIMAACGQL 360 Query: 366 KSLSKRIPKVPR 377 KS S+R R Sbjct: 361 KSESQRGISARR 372 >gi|26248881|ref|NP_754921.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli CFT073] gi|227887552|ref|ZP_04005357.1| Fe-S-cluster oxidoreductase [Escherichia coli 83972] gi|300981979|ref|ZP_07175825.1| radical SAM enzyme, Cfr family [Escherichia coli MS 45-1] gi|301047150|ref|ZP_07194245.1| radical SAM enzyme, Cfr family [Escherichia coli MS 185-1] gi|81475264|sp|Q8FF55|RLMN_ECOL6 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|26109287|gb|AAN81489.1|AE016764_171 Hypothetical protein yfgB [Escherichia coli CFT073] gi|227835902|gb|EEJ46368.1| Fe-S-cluster oxidoreductase [Escherichia coli 83972] gi|300300936|gb|EFJ57321.1| radical SAM enzyme, Cfr family [Escherichia coli MS 185-1] gi|300408874|gb|EFJ92412.1| radical SAM enzyme, Cfr family [Escherichia coli MS 45-1] gi|307554540|gb|ADN47315.1| radical SAM enzyme [Escherichia coli ABU 83972] gi|315292442|gb|EFU51794.1| radical SAM enzyme, Cfr family [Escherichia coli MS 153-1] Length = 384 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 160/382 (41%), Positives = 218/382 (57%), Gaps = 23/382 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+ Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + R I+N+VMM Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+KY +E + A R Y G SNA R+T EYVML +ND A L Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLGKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356 Query: 364 QLKSLS-KRIPKVPRQEMQITG 384 QL R + R+ MQ Sbjct: 357 QLAGDVIDRTKRTLRKRMQGEA 378 >gi|300920672|ref|ZP_07137083.1| radical SAM enzyme, Cfr family [Escherichia coli MS 115-1] gi|300412353|gb|EFJ95663.1| radical SAM enzyme, Cfr family [Escherichia coli MS 115-1] Length = 384 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 159/382 (41%), Positives = 217/382 (56%), Gaps = 23/382 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+ Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + R I+N+VMM Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDDTEHAHQLA 296 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356 Query: 364 QLKSLS-KRIPKVPRQEMQITG 384 QL R + R+ MQ Sbjct: 357 QLAGDVIDRTKRTLRKRMQGEA 378 >gi|85708979|ref|ZP_01040045.1| predicted Fe-S-cluster redox enzyme [Erythrobacter sp. NAP1] gi|85690513|gb|EAQ30516.1| predicted Fe-S-cluster redox enzyme [Erythrobacter sp. NAP1] Length = 416 Score = 470 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 194/374 (51%), Positives = 259/374 (69%), Gaps = 13/374 (3%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + LIG+ R + E + G+ +R ++R Q++ W+Y RG+ DF+ M+DIS+ +R L Sbjct: 29 RIDLIGLPRPRIRELFAEAGLDERQAKLRAKQVFHWLYHRGVTDFEAMTDISKTMRPWLA 88 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + F I P IV+ + S DGTRKWLL+ + E V+IP+ RGTLCVSSQVGC+ Sbjct: 89 ERFVIGRPNIVEAQHSSDGTRKWLLQT-----DDGHDFEMVFIPDADRGTLCVSSQVGCT 143 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC------EDIEGMVIPSVGRKI 179 L C+FC+TGT +LVRNLT EI+ QV+LAR LG++P E + + GR + Sbjct: 144 LNCTFCHTGTMRLVRNLTPGEIVGQVMLARDALGEWPKGVMDGLDEAEDVGHYTADGRLL 203 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 +NIVMMGMGEPL NFD+V+ +L++ D GL+ SKRRITLSTSG VP + R GEEIGV L Sbjct: 204 TNIVMMGMGEPLYNFDHVRDALNLVMDGDGLALSKRRITLSTSGVVPAMERCGEEIGVNL 263 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHAV+ D+R+ +VP+N+KY +E L+ AC YPG SNARRITFEYVMLK NDS DA Sbjct: 264 AVSLHAVTKDVRDEIVPLNKKYGIEELLQACADYPGASNARRITFEYVMLKDKNDSDEDA 323 Query: 300 LNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 L+++L+ +PAK+NLIPFNPWPG Y CS + I FS + G S+P+RTPRG D Sbjct: 324 RELVRLLRKFDLPAKVNLIPFNPWPGANYECSTPERIKAFSNIVFEGGISAPVRTPRGRD 383 Query: 358 ILAACGQLKSLSKR 371 I AACGQLK+ +++ Sbjct: 384 IDAACGQLKTAAQK 397 >gi|296104196|ref|YP_003614342.1| 23S rRNA methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058655|gb|ADF63393.1| 23S rRNA methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 388 Score = 470 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 159/379 (41%), Positives = 217/379 (57%), Gaps = 23/379 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E ++G R Q+ KW+Y +F M+DI++ +R+ L Sbjct: 21 KINLLDLNRQQMREFFKELG----EKPFRADQVMKWMYHYCSDNFDDMTDINKVLRNKLK 76 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+ Sbjct: 77 EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 130 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + R I+N+VMM Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGTRPITNVVMM 180 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 181 GMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 240 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L Sbjct: 241 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHELA 300 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG Sbjct: 301 ALLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACG 360 Query: 364 QLKSLS-KRIPKVPRQEMQ 381 QL R + R+ MQ Sbjct: 361 QLAGDVIDRTKRTLRKRMQ 379 >gi|218706020|ref|YP_002413539.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli UMN026] gi|293405958|ref|ZP_06649950.1| hypothetical protein ECGG_01315 [Escherichia coli FVEC1412] gi|298381759|ref|ZP_06991358.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli FVEC1302] gi|300898379|ref|ZP_07116722.1| radical SAM enzyme, Cfr family [Escherichia coli MS 198-1] gi|254807179|sp|B7N6A5|RLMN_ECOLU RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|218433117|emb|CAR14014.1| putative Fe-S containing enzyme [Escherichia coli UMN026] gi|291428166|gb|EFF01193.1| hypothetical protein ECGG_01315 [Escherichia coli FVEC1412] gi|298279201|gb|EFI20715.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli FVEC1302] gi|300357919|gb|EFJ73789.1| radical SAM enzyme, Cfr family [Escherichia coli MS 198-1] Length = 384 Score = 470 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 159/382 (41%), Positives = 217/382 (56%), Gaps = 23/382 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+ Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + R I+N+VMM Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRCYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356 Query: 364 QLKSLS-KRIPKVPRQEMQITG 384 QL R + R+ MQ Sbjct: 357 QLAGDVIDRTKRTLRKRMQGEA 378 >gi|157161992|ref|YP_001459310.1| hypothetical protein EcHS_A2668 [Escherichia coli HS] gi|205829751|sp|A8A323|RLMN_ECOHS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|157067672|gb|ABV06927.1| radical SAM enzyme, Cfr family [Escherichia coli HS] Length = 384 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 159/382 (41%), Positives = 217/382 (56%), Gaps = 23/382 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+ Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEVDRATLCVSSQVGCA 126 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + R I+N+VMM Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356 Query: 364 QLKSLS-KRIPKVPRQEMQITG 384 QL R + R+ MQ Sbjct: 357 QLAGDVIDRTKRTLRKRMQGEA 378 >gi|160876257|ref|YP_001555573.1| ribosomal RNA large subunit methyltransferase N [Shewanella baltica OS195] gi|217972550|ref|YP_002357301.1| ribosomal RNA large subunit methyltransferase N [Shewanella baltica OS223] gi|304410038|ref|ZP_07391657.1| radical SAM enzyme, Cfr family [Shewanella baltica OS183] gi|307302249|ref|ZP_07582007.1| radical SAM enzyme, Cfr family [Shewanella baltica BA175] gi|205829880|sp|A9KXL1|RLMN_SHEB9 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807210|sp|B8E9S4|RLMN_SHEB2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|160861779|gb|ABX50313.1| radical SAM enzyme, Cfr family [Shewanella baltica OS195] gi|217497685|gb|ACK45878.1| radical SAM enzyme, Cfr family [Shewanella baltica OS223] gi|304351447|gb|EFM15846.1| radical SAM enzyme, Cfr family [Shewanella baltica OS183] gi|306914287|gb|EFN44708.1| radical SAM enzyme, Cfr family [Shewanella baltica BA175] gi|315268446|gb|ADT95299.1| radical SAM enzyme, Cfr family [Shewanella baltica OS678] Length = 373 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 167/385 (43%), Positives = 225/385 (58%), Gaps = 25/385 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+ + +G R Q+ KW+Y G+ DF+ M++I++ +R L Sbjct: 4 KKINLLDLDRKAMRALFADMG----EKPFRADQLMKWLYHFGVSDFEEMTNINKVLRQKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I+ PEI + S DGT K+ + +G E+ETVYIPE R TLCVSSQVGC Sbjct: 60 AARCEIVAPEISSFQKSTDGTIKFAI-----NVGQGQEVETVYIPEDDRATLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC TG Q RNLT EI+ Q+ LG + R I+N+VM Sbjct: 115 ALECTFCSTGQQGFNRNLTVSEIVGQIWRVSHFLG----------FAKDTGERPITNVVM 164 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + ++G+ I V LA+S+H Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDAIDVALAVSIH 224 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302 A +++LR+ILVPIN+KYPL+ + R Y SN R+T EYVML INDS A L Sbjct: 225 APNDELRDILVPINKKYPLDEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHEL 284 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K++K P K+NLIPFNP+PG Y S I FS+ + G++ +R RG DI AAC Sbjct: 285 AKLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAAC 344 Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383 GQL + +KR+ K QE QI+ Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369 >gi|332087964|gb|EGI93089.1| hypothetical protein SB521682_2897 [Shigella boydii 5216-82] Length = 384 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 160/382 (41%), Positives = 218/382 (57%), Gaps = 23/382 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + G +ETVYIPE R TLCVSSQVGC+ Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAV------GYQRVETVYIPEDDRATLCVSSQVGCA 126 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + R I+N+VMM Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356 Query: 364 QLKSLS-KRIPKVPRQEMQITG 384 QL R + R+ MQ Sbjct: 357 QLAGDVIDRTKRTLRKRMQGEA 378 >gi|149184387|ref|ZP_01862705.1| predicted Fe-S-cluster redox enzyme [Erythrobacter sp. SD-21] gi|148831707|gb|EDL50140.1| predicted Fe-S-cluster redox enzyme [Erythrobacter sp. SD-21] Length = 421 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 193/387 (49%), Positives = 259/387 (66%), Gaps = 18/387 (4%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + LIG+ +E + E G+ + ++R Q++ W+Y RG+ DF+ M+DI++ +R L Sbjct: 29 RVDLIGLPKERIRELFETAGLQPKQAKLRAKQVFHWLYHRGVTDFEAMTDIAKTMRPWLA 88 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + F I PE+V+ + S DGTRKWLL+ E E V+IP+ RGTLCVSSQVGC+ Sbjct: 89 ERFVIGRPEVVEAQHSTDGTRKWLLKT-----ADGHEFEMVFIPDADRGTLCVSSQVGCT 143 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC-----------EDIEGMVIPS 174 L C FC+TGT KLVRNLT EI+ QV+LAR LG++P + + S Sbjct: 144 LNCRFCHTGTMKLVRNLTPGEIVGQVMLARDALGEWPKGNMNFDYGADLDDAEDEGHYTS 203 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234 GR ++NIVMMGMGEPL NFDNVK +L + D GL+ SKRRITLSTSG VP + R GEE Sbjct: 204 DGRLLTNIVMMGMGEPLYNFDNVKGALKLVMDGDGLALSKRRITLSTSGVVPAMERCGEE 263 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 IGV LA+SLHAV+ ++R+ +VP+N+KY +E L++AC YPG SNARRITFEYVMLK ND Sbjct: 264 IGVNLAVSLHAVTKEIRDEIVPLNKKYGIEELLEACAAYPGASNARRITFEYVMLKDKND 323 Query: 295 SPRDALNLIKILKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 + A L+++LK +PAK+NLIPFNPWPG Y S + + FS+ + G S+P+RT Sbjct: 324 TDEHARELVRLLKHYKLPAKVNLIPFNPWPGAAYDTSTPERVKRFSDIVFEGGISAPVRT 383 Query: 353 PRGLDILAACGQLKSLSKRIPKVPRQE 379 PRG DI AACGQLK+ +++ + R Sbjct: 384 PRGRDIDAACGQLKTAAEKKSRAQRDR 410 >gi|146293751|ref|YP_001184175.1| ribosomal RNA large subunit methyltransferase N [Shewanella putrefaciens CN-32] gi|205829884|sp|A4Y8U3|RLMN_SHEPC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|145565441|gb|ABP76376.1| radical SAM enzyme, Cfr family [Shewanella putrefaciens CN-32] Length = 373 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 165/385 (42%), Positives = 223/385 (57%), Gaps = 25/385 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+ + +G R Q+ KWIY G+ DF+ M++I++ +R L Sbjct: 4 KKINLLDLDRKAMRALFADLG----EKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I+ PEI + S DGT K+ + +G E+ETVYIPE R TLCVSSQVGC Sbjct: 60 AARCEIVAPEISSFQKSTDGTIKFAI-----HVGEGQEVETVYIPEDDRATLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ Q+ LG D R I+N+VM Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLGFAKDTGD----------RPITNVVM 164 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + ++G+ + V LA+S+H Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIH 224 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302 A +++LR+ILVP+N+KYPL+ + R Y SN R+T EYVML INDS A L Sbjct: 225 APNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHEL 284 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K+++ P K+NLIPFNP+PG Y S I FS+ + G + +R RG DI AAC Sbjct: 285 AKLMEDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344 Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383 GQL + +KR+ K QE QI+ Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369 >gi|156932938|ref|YP_001436854.1| ribosomal RNA large subunit methyltransferase N [Cronobacter sakazakii ATCC BAA-894] gi|205829756|sp|A7MGV3|RLMN_ENTS8 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|156531192|gb|ABU76018.1| hypothetical protein ESA_00741 [Cronobacter sakazakii ATCC BAA-894] Length = 388 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 161/380 (42%), Positives = 217/380 (57%), Gaps = 23/380 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+ + E +G R Q+ KW+Y DF M+DI++ +R L Sbjct: 20 EKINLLDLNRQAMREFFKTLG----EKPFRADQVMKWMYHYCCDDFDEMTDINKVLRGKL 75 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC Sbjct: 76 KEVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGC 129 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNL EI+ QV A ++G + R I+N+VM Sbjct: 130 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AAKVTGQRPITNVVM 179 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 180 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 239 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++++R+ +VPIN+KY +E + A R Y G SNA R+T EYVML +ND A L Sbjct: 240 APNDEIRDEIVPINKKYNIETFLAAVRRYIGKSNANQGRVTIEYVMLDHVNDGTEHAHQL 299 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AAC Sbjct: 300 AELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAAC 359 Query: 363 GQLKSLS-KRIPKVPRQEMQ 381 GQL R + R+ MQ Sbjct: 360 GQLAGDVIDRTKRTMRKRMQ 379 >gi|325265757|ref|ZP_08132444.1| cfr family radical SAM enzyme [Kingella denitrificans ATCC 33394] gi|324982740|gb|EGC18365.1| cfr family radical SAM enzyme [Kingella denitrificans ATCC 33394] Length = 364 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 161/377 (42%), Positives = 221/377 (58%), Gaps = 20/377 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ L E ++G R Q+ +WI+ G F M+D+++ +R L Sbjct: 2 KTNLLNFDLNALTEHFAQMG----EKPFRAKQVMRWIHQGGAESFDEMTDLAKSLRAKLQ 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + P ++ + S DGTRKWLL +G +ETV+IPE RGTLC+SSQVGC+ Sbjct: 58 EKAVVGIPVLMAAQESRDGTRKWLL-----DVGTGNGVETVFIPETERGTLCISSQVGCA 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC TG Q RNLTA EI+ Q+ A LG V P R ISN+VMM Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKALG-----------VTPKNERVISNVVMM 161 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEP+ N+DNV +LSI D G S+RR+T+STSG VP + R+ E++ V LA+SLHA Sbjct: 162 GMGEPMANYDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEDMPVALAVSLHA 221 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ +R+ +VP+N+KYPL+ L+ AC Y + ITFEYVML G+ND P A L+++ Sbjct: 222 SNDKVRDEIVPLNKKYPLKELMAACNRYLTKAPRDFITFEYVMLDGVNDKPEHAHELVQL 281 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +K P K NLIPFNP+P Y S K+I F E + +G + +R RG DI AACGQL Sbjct: 282 VKDTPCKFNLIPFNPFPNSGYERSSNKNINIFKEILMEAGLVTTVRKTRGDDIDAACGQL 341 Query: 366 KSLSKRIPKVPRQEMQI 382 + K + QI Sbjct: 342 AGQVQDKTKRQEKWQQI 358 >gi|333000705|gb|EGK20281.1| hypothetical protein SFVA6_3397 [Shigella flexneri VA-6] gi|333002312|gb|EGK21876.1| hypothetical protein SFK272_3309 [Shigella flexneri K-272] gi|333016135|gb|EGK35467.1| hypothetical protein SFK227_3146 [Shigella flexneri K-227] Length = 384 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 159/382 (41%), Positives = 217/382 (56%), Gaps = 23/382 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKTFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+ Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + R I+N+VMM Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356 Query: 364 QLKSLS-KRIPKVPRQEMQITG 384 QL R + R+ MQ Sbjct: 357 QLAGDVIDRTKRTLRKRMQGEA 378 >gi|87199457|ref|YP_496714.1| hypothetical protein Saro_1436 [Novosphingobium aromaticivorans DSM 12444] gi|123749853|sp|Q2G8E3|RLMN_NOVAD RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|87135138|gb|ABD25880.1| 23S rRNA m(2)A-2503 methyltransferase [Novosphingobium aromaticivorans DSM 12444] Length = 429 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 197/394 (50%), Positives = 263/394 (66%), Gaps = 21/394 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + LIG+ R+++ E + G+ + ++R Q++ W+Y RG+ DF M+DI++ +R L Sbjct: 35 RIDLIGLPRKQIAELFAQAGLDAKAAKLRAKQVFHWLYHRGVTDFDAMTDIAKTMRPWLA 94 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + F I PEIV+ ++S DGTRKWLLR + + E V+IP+ RGTLCVSSQVGC+ Sbjct: 95 ERFVIGRPEIVEAQVSTDGTRKWLLRTADK-----HDFEMVFIPDADRGTLCVSSQVGCT 149 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC--------------EDIEGMV 171 L C FC+TGT +LVRNLT EI+ QV+LAR LG++P +D + Sbjct: 150 LNCRFCHTGTMRLVRNLTPGEIVGQVMLARDALGEWPKGANDSRVATMAGLDFDDEDEGS 209 Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231 S GR ++NIVMMGMGEPL NFDNV+ +L + D GL+ SKRRITLSTSG VP + R Sbjct: 210 YTSDGRLLTNIVMMGMGEPLYNFDNVRDALKLVMDGDGLALSKRRITLSTSGVVPMMERC 269 Query: 232 GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291 GEEIGV LA+SLHAV+ D+R+ +VPINRKY +E L+ AC YPG SNARRITFEYVMLK Sbjct: 270 GEEIGVNLAVSLHAVTKDVRDEIVPINRKYGIEELLQACADYPGASNARRITFEYVMLKD 329 Query: 292 INDSPRDALNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349 NDS A L+++++ +PAK+NLIPFNPWPG Y CS I +F+ + +G S+P Sbjct: 330 KNDSDDHARELVRLIRQYKLPAKVNLIPFNPWPGAPYECSSPDRIKSFANIVFEAGISAP 389 Query: 350 IRTPRGLDILAACGQLKSLSKRIPKVPRQEMQIT 383 +RTPRG DI AACGQLK+ S+R + + Sbjct: 390 VRTPRGRDIDAACGQLKTASERKSRAELDRLAEE 423 >gi|283786133|ref|YP_003365998.1| radical SAM superfamily protein [Citrobacter rodentium ICC168] gi|282949587|emb|CBG89205.1| radical SAM superfamily protein [Citrobacter rodentium ICC168] Length = 388 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 159/382 (41%), Positives = 218/382 (57%), Gaps = 23/382 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E ++G R Q+ KW+Y +F M+DI++ +R+ L Sbjct: 21 KINLLDLNRQQMREFFKEMG----EKPFRADQVMKWMYHYCSDNFDEMTDINKVLRNKLK 76 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+ Sbjct: 77 EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 130 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + R I+N+VMM Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 180 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 181 GMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 240 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L Sbjct: 241 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 360 Query: 364 QLKSLS-KRIPKVPRQEMQITG 384 QL R + R+ MQ Sbjct: 361 QLAGDVIDRTKRTLRKRMQGEA 382 >gi|153001521|ref|YP_001367202.1| ribosomal RNA large subunit methyltransferase N [Shewanella baltica OS185] gi|205829879|sp|A6WQQ0|RLMN_SHEB8 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|151366139|gb|ABS09139.1| radical SAM enzyme, Cfr family [Shewanella baltica OS185] Length = 373 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 167/385 (43%), Positives = 225/385 (58%), Gaps = 25/385 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+ + +G R Q+ KW+Y G+ DF+ M++I++ +R L Sbjct: 4 KKINLLDLDRKAMRALFADMG----EKPFRADQLMKWLYHFGVSDFEEMTNINKVLRQKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I+ PEI + S DGT K+ + +G E+ETVYIPE R TLCVSSQVGC Sbjct: 60 AARCEIVAPEISSFQKSTDGTIKFAI-----NVGQGQEVETVYIPEDDRATLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC TG Q RNLT EI+ Q+ LG + R I+N+VM Sbjct: 115 ALECTFCSTGQQGFNRNLTVSEIVGQIWRVSHFLG----------FAKDTGERPITNVVM 164 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + ++G+ + V LA+S+H Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIH 224 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302 A +++LR+ILVPIN+KYPL+ + R Y SN R+T EYVML INDS A L Sbjct: 225 APNDELRDILVPINKKYPLDEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHEL 284 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K++K P KINLIPFNP+PG Y S I FS+ + G++ +R RG DI AAC Sbjct: 285 AKLMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAAC 344 Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383 GQL + +KR+ K QE QI+ Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369 >gi|294140143|ref|YP_003556121.1| hypothetical protein SVI_1372 [Shewanella violacea DSS12] gi|293326612|dbj|BAJ01343.1| conserved hypothetical protein [Shewanella violacea DSS12] Length = 379 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 168/385 (43%), Positives = 224/385 (58%), Gaps = 25/385 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+ L +G R Q+ KWIY G+ DF+ M++I++ +R L Sbjct: 10 KKINLLDLDRKGLRALFTDMG----EKPFRADQLMKWIYHFGVSDFELMTNINKGLRAKL 65 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I P+I + S DGT K+ + +G E+ETVYIPE R TLCVSSQVGC Sbjct: 66 AARCEITAPQISSYQKSEDGTIKFAI-----NVGDGQEVETVYIPEGDRATLCVSSQVGC 120 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV +G + + R I+N+VM Sbjct: 121 ALECTFCSTAQQGFNRNLTVSEIIGQVWRVADFIG----------FIKDTGERPITNVVM 170 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + +G+ I V LA+S+H Sbjct: 171 MGMGEPLLNLKNVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDILGDAIDVALAVSIH 230 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302 A +++LR++LVP+N+KYPLE + A R Y SN R+T EYVML INDS A L Sbjct: 231 AANDELRDVLVPVNKKYPLEEFLAAIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHEL 290 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K++K P KINLIPFNP+PG Y S I FS+ + G++ +R RG DI AAC Sbjct: 291 AKLMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAAC 350 Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383 GQL + +KR+ K QE QI+ Sbjct: 351 GQLAGDIRDRTKRLAKKRMQENQIS 375 >gi|157144549|ref|YP_001451868.1| ribosomal RNA large subunit methyltransferase N [Citrobacter koseri ATCC BAA-895] gi|205829699|sp|A8AD69|RLMN_CITK8 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|157081754|gb|ABV11432.1| hypothetical protein CKO_00268 [Citrobacter koseri ATCC BAA-895] Length = 388 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 162/382 (42%), Positives = 218/382 (57%), Gaps = 23/382 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E ++G R Q+ KW+Y +F M+DI++ +R L Sbjct: 21 KINLLDLNRQQMREFFKELG----EKPFRADQVMKWMYHYCSDNFDEMTDINKVLRGKLK 76 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+ Sbjct: 77 EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 130 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + R I+N+VMM Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 180 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 181 GMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 240 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPINRKY +E +DA R Y SNA R+T EYVML IND A L Sbjct: 241 PNDEIRDEIVPINRKYNIETFLDAVRRYLQKSNANQGRVTIEYVMLDHINDGTEHAHQLA 300 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 360 Query: 364 QLKSLS-KRIPKVPRQEMQITG 384 QL R + R+ MQ Sbjct: 361 QLAGDVIDRTKRTLRKRMQGEA 382 >gi|295691362|ref|YP_003595055.1| radical SAM enzyme, Cfr family [Caulobacter segnis ATCC 21756] gi|295433265|gb|ADG12437.1| radical SAM enzyme, Cfr family [Caulobacter segnis ATCC 21756] Length = 403 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 196/380 (51%), Positives = 268/380 (70%), Gaps = 16/380 (4%) Query: 7 ESLIGMMREELEEALLKIGI-PQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 +L G+ R +L AL++ G+ +MR +QI++W++ RG+ DF MSD+++E R L Sbjct: 25 VNLSGLTRPQLIAALVESGVVEHGKAKMRATQIFRWMHHRGVTDFASMSDVAKETRARLA 84 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGC 124 + F+I PEIV+ ++S DGTRKWL+R +E+E+V+IP R G LCVSSQVGC Sbjct: 85 EAFTIARPEIVERQVSQDGTRKWLIRMAP-----GIEVESVFIPGVGRAGALCVSSQVGC 139 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L CSFC+TGTQ LVRNLTA EI+ QV +A+ LG++P ++ R++SNIV Sbjct: 140 TLNCSFCHTGTQPLVRNLTAAEIVAQVQVAKDDLGEWPSDKE---------DRQLSNIVF 190 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N V ++ I SD+ G+ S+RRIT+STSG VP + ++G MLAISLH Sbjct: 191 MGMGEPLYNLGQVADAIEIISDNEGIGISRRRITVSTSGVVPMLEKLGSTTQAMLAISLH 250 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++ LR++LVP+N+KYP+ L+ R YPGLSNARR+TFEYVMLKG+NDSP +A L+ Sbjct: 251 ATNDALRDVLVPLNKKYPIAELMAGIRAYPGLSNARRVTFEYVMLKGVNDSPPEARALVN 310 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 ++KGIPAKINLIPFNPWPG +Y CSD I F+ + ++GYSSPIRTPRG DILAACGQ Sbjct: 311 LIKGIPAKINLIPFNPWPGSDYQCSDWATIEAFAAILNKAGYSSPIRTPRGRDILAACGQ 370 Query: 365 LKSLSKRIPKVPRQEMQITG 384 LKS S+++ +++ + Sbjct: 371 LKSESEKVRASALRKLSLAA 390 >gi|163749560|ref|ZP_02156807.1| hypothetical protein KT99_16109 [Shewanella benthica KT99] gi|161330670|gb|EDQ01607.1| hypothetical protein KT99_16109 [Shewanella benthica KT99] Length = 373 Score = 468 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 167/385 (43%), Positives = 225/385 (58%), Gaps = 25/385 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+ L +G R Q+ KWIY G+ DF+ M++I++ +R L Sbjct: 4 KKINLLDLDRKGLRALFTDMG----EKPFRADQLMKWIYHFGVSDFEVMTNINKVLRAKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PEI + S DGT K+ + +G E+ETVYIPE R TLCVSSQVGC Sbjct: 60 AASCEIKAPEISSYQKSADGTIKFSI-----NVGDGQEVETVYIPEGDRATLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV +G + + R I+N+VM Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIIGQVWRVADFIG----------FIKKTGERPITNVVM 164 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + ++G+ I V LA+S+H Sbjct: 165 MGMGEPLLNLKNVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDAIDVALAVSIH 224 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302 A +++LR++LVP+N+KYPL+ + + R Y SN R+T EYVML INDS A L Sbjct: 225 AANDELRDVLVPVNKKYPLQEFLASIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHEL 284 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K++K P KINLIPFNP+PG Y S I FS+ + G++ +R RG DI AAC Sbjct: 285 AKLMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGEDIDAAC 344 Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383 GQL + +KR+ K QE QI+ Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369 >gi|149375014|ref|ZP_01892787.1| predicted Fe-S-cluster redox enzyme [Marinobacter algicola DG893] gi|149360903|gb|EDM49354.1| predicted Fe-S-cluster redox enzyme [Marinobacter algicola DG893] Length = 370 Score = 468 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 160/380 (42%), Positives = 230/380 (60%), Gaps = 20/380 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+GM + ++E +G R R +Q+ +WI+ RG DF M+++S+ +R L Sbjct: 6 EKTNLLGMPKAKMEAFFESLG----EKRFRATQVLQWIHQRGADDFDQMTNMSKVLREKL 61 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+V ++ S DGTRKW++R +ETV IP+ RGTLCVSSQ+GC Sbjct: 62 KAVAEIRGPEVVYDESSKDGTRKWVMRM-----DNGNSVETVLIPDGERGTLCVSSQIGC 116 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 SL C+FC TG + RNLTA EI+ QV +AR F P R I+N+VM Sbjct: 117 SLDCTFCSTGKRGFNRNLTAAEIIGQVWVARKAFMPF----------EPGPDRPITNVVM 166 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV ++++ + + SKRR+T+STSG VP + ++GE V LAISLH Sbjct: 167 MGMGEPLLNFDNVVDAMNLMMEDLAYGISKRRVTVSTSGVVPALDKLGEVTDVSLAISLH 226 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLI 303 A +++LRN LVP+N+KYP+ L+ A R Y L + R+ T EY +++G+ND P A L Sbjct: 227 APNDELRNQLVPLNKKYPIAELLAATRRYLARLPDKRKATIEYTVIEGVNDQPEHARELA 286 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +L+G+P KINLIPFNP+P ++ F + +GY + +RT RG DI AACG Sbjct: 287 VVLRGLPCKINLIPFNPFPESDFRRPSMNATRRFQSVLNEAGYIATVRTTRGDDIDAACG 346 Query: 364 QLKSLSKRIPKVPRQEMQIT 383 QL + + K ++ +Q+ Sbjct: 347 QLVGMVEDRTKRSQRYIQVQ 366 >gi|15832633|ref|NP_311406.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli O157:H7 str. Sakai] gi|168748424|ref|ZP_02773446.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4113] gi|168756289|ref|ZP_02781296.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4401] gi|168761127|ref|ZP_02786134.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4501] gi|168768609|ref|ZP_02793616.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4486] gi|168773569|ref|ZP_02798576.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4196] gi|168778483|ref|ZP_02803490.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4076] gi|168787863|ref|ZP_02812870.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC869] gi|168798888|ref|ZP_02823895.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC508] gi|195936659|ref|ZP_03082041.1| hypothetical protein EscherichcoliO157_09385 [Escherichia coli O157:H7 str. EC4024] gi|208808631|ref|ZP_03250968.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4206] gi|208814380|ref|ZP_03255709.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4045] gi|208820776|ref|ZP_03261096.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4042] gi|209400754|ref|YP_002271987.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4115] gi|217327135|ref|ZP_03443218.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. TW14588] gi|254794463|ref|YP_003079300.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli O157:H7 str. TW14359] gi|261223051|ref|ZP_05937332.1| predicted enzyme [Escherichia coli O157:H7 str. FRIK2000] gi|261259398|ref|ZP_05951931.1| predicted enzyme [Escherichia coli O157:H7 str. FRIK966] gi|291283738|ref|YP_003500556.1| Radical SAM enzyme, Cfr family [Escherichia coli O55:H7 str. CB9615] gi|205829862|sp|Q8XAA4|RLMN_ECO57 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807175|sp|B5Z0Y6|RLMN_ECO5E RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|13362849|dbj|BAB36802.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|187770632|gb|EDU34476.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4196] gi|188017093|gb|EDU55215.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4113] gi|189003147|gb|EDU72133.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4076] gi|189356574|gb|EDU74993.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4401] gi|189362276|gb|EDU80695.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4486] gi|189368421|gb|EDU86837.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4501] gi|189372335|gb|EDU90751.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC869] gi|189378598|gb|EDU97014.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC508] gi|208728432|gb|EDZ78033.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4206] gi|208735657|gb|EDZ84344.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4045] gi|208740899|gb|EDZ88581.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4042] gi|209162154|gb|ACI39587.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. EC4115] gi|209763360|gb|ACI79992.1| hypothetical protein ECs3379 [Escherichia coli] gi|209763362|gb|ACI79993.1| hypothetical protein ECs3379 [Escherichia coli] gi|209763364|gb|ACI79994.1| hypothetical protein ECs3379 [Escherichia coli] gi|209763366|gb|ACI79995.1| hypothetical protein ECs3379 [Escherichia coli] gi|217319502|gb|EEC27927.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str. TW14588] gi|254593863|gb|ACT73224.1| predicted enzyme [Escherichia coli O157:H7 str. TW14359] gi|290763611|gb|ADD57572.1| Radical SAM enzyme, Cfr family [Escherichia coli O55:H7 str. CB9615] gi|320188850|gb|EFW63509.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli O157:H7 str. EC1212] gi|320640861|gb|EFX10349.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli O157:H7 str. G5101] gi|320657195|gb|EFX25004.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662801|gb|EFX30133.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli O55:H7 str. USDA 5905] gi|320667605|gb|EFX34520.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli O157:H7 str. LSU-61] gi|326340315|gb|EGD64119.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli O157:H7 str. 1125] gi|326344999|gb|EGD68743.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli O157:H7 str. 1044] Length = 384 Score = 468 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 158/382 (41%), Positives = 216/382 (56%), Gaps = 23/382 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+ Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + R I+N+VMM Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+P Y S I FS+ + G+++ +R RG DI AACG Sbjct: 297 ELLKDTPCKINLIPWNPFPAAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356 Query: 364 QLKSLS-KRIPKVPRQEMQITG 384 QL R + R+ MQ Sbjct: 357 QLAGDVIDRTKRTLRKRMQGEA 378 >gi|193068396|ref|ZP_03049359.1| radical SAM enzyme, Cfr family [Escherichia coli E110019] gi|192958348|gb|EDV88788.1| radical SAM enzyme, Cfr family [Escherichia coli E110019] Length = 384 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 158/382 (41%), Positives = 216/382 (56%), Gaps = 23/382 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ +G R Q+ KW+Y +F M+DI++ +R L Sbjct: 17 KINLLDLNRQQMRVFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+ Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + R I+N+VMM Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356 Query: 364 QLKSLS-KRIPKVPRQEMQITG 384 QL R + R+ MQ Sbjct: 357 QLAGDVIDRTKRTLRKRMQGEA 378 >gi|146308518|ref|YP_001188983.1| radical SAM protein [Pseudomonas mendocina ymp] gi|205829652|sp|A4XY35|RLMN_PSEMY RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|145576719|gb|ABP86251.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudomonas mendocina ymp] Length = 382 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 169/378 (44%), Positives = 228/378 (60%), Gaps = 21/378 (5%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 N K +L+G+ + E+E+ IG R R Q+ KWI+ G+ DF M+++ + +R Sbjct: 3 NTTGKINLLGLTQPEMEQFFESIG----EKRFRAGQVMKWIHHFGVDDFAAMTNVGKALR 58 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L I PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ Sbjct: 59 EKLEASAEIRGPEVVSENISADGTRKWVVR-----VASGSCVETVYIPQNGRGTLCVSSQ 113 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC+L CSFC TG Q +LT+ EI+ QV +A G P D R I+N Sbjct: 114 AGCALDCSFCSTGKQGFNSDLTSAEIIGQVWIANKSFGTVPAKID----------RAITN 163 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 +VMMGMGEPL NFDNV ++ I D +G SKR++TLSTSG VP I ++ E I V LA+ Sbjct: 164 VVMMGMGEPLLNFDNVVSAMQIMMDDLGYGISKRKVTLSTSGVVPMIDKLAEVIDVSLAL 223 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDAL 300 SLHA +++LRN LVPIN+KYPL+ML+ AC+ Y +R+ T EY +LKG+ND P A Sbjct: 224 SLHAPNDELRNQLVPINKKYPLDMLLAACKRYVAKLGEKRVLTIEYTLLKGVNDQPEHAE 283 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 +I +L +P KINLIPFNP+P Y I F + + ++G++ +RT RG DI A Sbjct: 284 QMIALLADVPCKINLIPFNPFPFSGYERPSNNAIRRFQDLLHKAGHNVTVRTTRGDDIDA 343 Query: 361 ACGQL-KSLSKRIPKVPR 377 ACGQL + R + R Sbjct: 344 ACGQLVGQVMDRTRRSER 361 >gi|24113846|ref|NP_708356.1| hypothetical protein SF2563 [Shigella flexneri 2a str. 301] gi|30063909|ref|NP_838080.1| hypothetical protein S2735 [Shigella flexneri 2a str. 2457T] gi|110806448|ref|YP_689968.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri 5 str. 8401] gi|81723142|sp|Q83K42|RLMN_SHIFL RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123342626|sp|Q0T202|RLMN_SHIF8 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|24052937|gb|AAN44063.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|30042165|gb|AAP17890.1| hypothetical protein S2735 [Shigella flexneri 2a str. 2457T] gi|110615996|gb|ABF04663.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] gi|313651003|gb|EFS15403.1| UPF0063 protein yfgB [Shigella flexneri 2a str. 2457T] gi|332754204|gb|EGJ84572.1| hypothetical protein SF434370_2731 [Shigella flexneri 4343-70] gi|332755567|gb|EGJ85931.1| hypothetical protein SFK671_3114 [Shigella flexneri K-671] gi|332756478|gb|EGJ86829.1| hypothetical protein SF274771_3067 [Shigella flexneri 2747-71] gi|332766350|gb|EGJ96560.1| 23S rRNA methyltransferase [Shigella flexneri 2930-71] gi|333016202|gb|EGK35533.1| hypothetical protein SFK304_3333 [Shigella flexneri K-304] Length = 384 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 158/382 (41%), Positives = 216/382 (56%), Gaps = 23/382 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKTFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+ Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + R I+N+VMM Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+P Y S I FS+ + G+++ +R RG DI AACG Sbjct: 297 ELLKDTPCKINLIPWNPFPDAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356 Query: 364 QLKSLS-KRIPKVPRQEMQITG 384 QL R + R+ MQ Sbjct: 357 QLAGDVIDRTKRTLRKRMQGEA 378 >gi|293415781|ref|ZP_06658424.1| cfr family radical SAM enzyme [Escherichia coli B185] gi|291433429|gb|EFF06408.1| cfr family radical SAM enzyme [Escherichia coli B185] Length = 384 Score = 468 bits (1204), Expect = e-130, Method: Composition-based stats. Identities = 158/382 (41%), Positives = 216/382 (56%), Gaps = 23/382 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+ Sbjct: 73 EMAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + R I+N+VMM Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+ G Y S I FS+ + G+++ +R RG DI AACG Sbjct: 297 ELLKDTPCKINLIPWNPFLGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356 Query: 364 QLKSLS-KRIPKVPRQEMQITG 384 QL R + R+ MQ Sbjct: 357 QLAGDVIDRTKRTLRKRMQGEA 378 >gi|326387224|ref|ZP_08208834.1| hypothetical protein Y88_1274 [Novosphingobium nitrogenifigens DSM 19370] gi|326208405|gb|EGD59212.1| hypothetical protein Y88_1274 [Novosphingobium nitrogenifigens DSM 19370] Length = 421 Score = 468 bits (1204), Expect = e-130, Method: Composition-based stats. Identities = 196/393 (49%), Positives = 258/393 (65%), Gaps = 20/393 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + L+G+ R+ + E G+ R ++R Q++ WIY RG+ DF M+DI++ +R L+ Sbjct: 28 RIDLVGLPRKAITELFATAGLDARAAKLRAKQVFHWIYHRGVTDFDAMTDIAKTMRPWLS 87 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + F I P IV + S DGTRKWLLR + E V+IP+ RGTLCVSSQVGC+ Sbjct: 88 ERFVIDRPSIVTAQASSDGTRKWLLRTADN-----HDFEMVFIPDADRGTLCVSSQVGCT 142 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC-------------EDIEGMVI 172 L C FC+TGT +LVRNLT EI+ QV+LAR LG++P + Sbjct: 143 LNCRFCHTGTMRLVRNLTPGEIVGQVMLARDALGEWPKGGGTMAGLDEDPEDDPEGAQAY 202 Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232 + GR ++NIVMMGMGEPL NFDNV+ +L I D GL+ SKRRITLSTSG VP + R G Sbjct: 203 TADGRLLTNIVMMGMGEPLYNFDNVRDALKIVMDGDGLALSKRRITLSTSGVVPMMDRCG 262 Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 +EIGV LA+SLHAV+ ++R+ +VPINRKY LE L+ AC YPG SNARRITFEYVMLK Sbjct: 263 DEIGVNLAVSLHAVTKEVRDEIVPINRKYGLEELLSACAAYPGASNARRITFEYVMLKDK 322 Query: 293 NDSPRDALNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI 350 NDS DA L+++++ +PAK+NLIPFNPWPG Y CS + I FS+ + +G S+P+ Sbjct: 323 NDSDEDARELVRLIRKYKLPAKVNLIPFNPWPGAPYECSTPERIKRFSDIVFEAGISAPV 382 Query: 351 RTPRGLDILAACGQLKSLSKRIPKVPRQEMQIT 383 RTPRG DI AACGQLK+ ++R + + Sbjct: 383 RTPRGRDIDAACGQLKTAAERKTRAELDRLAEE 415 >gi|15599001|ref|NP_252495.1| hypothetical protein PA3806 [Pseudomonas aeruginosa PAO1] gi|107103326|ref|ZP_01367244.1| hypothetical protein PaerPA_01004395 [Pseudomonas aeruginosa PACS2] gi|116051831|ref|YP_789326.1| hypothetical protein PA14_14830 [Pseudomonas aeruginosa UCBPP-PA14] gi|296387679|ref|ZP_06877154.1| hypothetical protein PaerPAb_05972 [Pseudomonas aeruginosa PAb1] gi|313109224|ref|ZP_07795192.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa 39016] gi|3287987|sp|Q51385|RLMN_PSEAE RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|122260978|sp|Q02RW0|RLMN_PSEAB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|9949979|gb|AAG07193.1|AE004798_16 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|1162959|gb|AAB40948.1| homologous to HI0365 in Haemophilus influenzae; ORF1 [Pseudomonas aeruginosa PAO1] gi|115587052|gb|ABJ13067.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa UCBPP-PA14] gi|310881694|gb|EFQ40288.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa 39016] Length = 379 Score = 468 bits (1204), Expect = e-130, Method: Composition-based stats. Identities = 171/374 (45%), Positives = 227/374 (60%), Gaps = 21/374 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ + +LE+ IG R R Q+ KWI+ G+ DF M+++ + +R L Sbjct: 8 KVNLLGLTQPQLEQFFESIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVGKALREKLK 63 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I PEIV + IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 64 ASAEIRGPEIVSQDISADGTRKWVVR-----VASGSCVETVYIPQGGRGTLCVSSQAGCA 118 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q +LTA E++ QV +A G P D R I+N+VMM Sbjct: 119 LDCSFCSTGKQGFNSDLTAAEVIGQVWIANKSFGTVPAKID----------RAITNVVMM 168 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV +++I D +G SKR++TLSTSG VP I ++GE I V LA+SLHA Sbjct: 169 GMGEPLLNFDNVVAAMNIMMDDLGYGISKRKVTLSTSGVVPMIDKLGEVIDVSLALSLHA 228 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304 +++LRN LVPIN+KYPL ML+DACR Y +R+ T EY +LK +ND P A +I Sbjct: 229 PNDELRNKLVPINKKYPLGMLLDACRRYISRLGEKRVLTVEYTLLKDVNDQPEHAEQMIA 288 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK P KINLIPFNP+P Y I F + + + G++ +RT RG DI AACGQ Sbjct: 289 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDMLHKGGFNVTVRTTRGDDIDAACGQ 348 Query: 365 L-KSLSKRIPKVPR 377 L + R + R Sbjct: 349 LVGQVMDRTRRSER 362 >gi|237732496|ref|ZP_04562977.1| 23S rRNA methyltransferase [Citrobacter sp. 30_2] gi|226908035|gb|EEH93953.1| 23S rRNA methyltransferase [Citrobacter sp. 30_2] Length = 388 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 161/379 (42%), Positives = 219/379 (57%), Gaps = 23/379 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E ++G R Q+ KW+Y +F M+DI++ +R+ L Sbjct: 21 KINLLDLNRQQMREFFKEMG----EKPFRADQVMKWMYHYCSDNFDDMTDINKVLRNKLK 76 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+ Sbjct: 77 EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 130 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G V + R I+N+VMM Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AVKATGVRPITNVVMM 180 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 181 GMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 240 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML IND A L Sbjct: 241 PNDEIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHINDGTEHAHQLA 300 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 360 Query: 364 QLKSLS-KRIPKVPRQEMQ 381 QL R + R+ MQ Sbjct: 361 QLAGDVIDRTKRTLRKRMQ 379 >gi|218889910|ref|YP_002438774.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa LESB58] gi|218770133|emb|CAW25895.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa LESB58] Length = 379 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 171/374 (45%), Positives = 227/374 (60%), Gaps = 21/374 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ + +LE+ IG R R Q+ KWI+ G+ DF M+++ + +R L Sbjct: 8 KVNLLGLTQPQLEQFFESIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVGKALREKLK 63 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I PEIV + IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 64 ASAEIRGPEIVSQDISADGTRKWVVR-----VASGSCVETVYIPQGGRGTLCVSSQAGCA 118 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q +LTA E++ QV +A G P D R I+N+VMM Sbjct: 119 LDCSFCSTGKQGFNSDLTAAEVIGQVWIANKSFGTVPAKID----------RAITNVVMM 168 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV +++I D +G SKR++TLSTSG VP I ++GE I V LA+SLHA Sbjct: 169 GMGEPLLNFDNVVAAMNIMMDDLGYGISKRKVTLSTSGVVPMIDKLGEVIDVSLALSLHA 228 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304 +++LRN LVPIN+KYPL ML+DACR Y +R+ T EY +LK +ND P A +I Sbjct: 229 PNDELRNKLVPINKKYPLGMLLDACRRYISRLGEKRVLTVEYTLLKDVNDQPEHAEQMIA 288 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK P KINLIPFNP+P Y I F + + + G++ +RT RG DI AACGQ Sbjct: 289 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDMLHKGGFNVTVRTTRGDDIDAACGQ 348 Query: 365 L-KSLSKRIPKVPR 377 L + R + R Sbjct: 349 LVGQVMDRTRRSER 362 >gi|283832102|ref|ZP_06351843.1| radical SAM enzyme, Cfr family [Citrobacter youngae ATCC 29220] gi|291071728|gb|EFE09837.1| radical SAM enzyme, Cfr family [Citrobacter youngae ATCC 29220] Length = 388 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 160/379 (42%), Positives = 219/379 (57%), Gaps = 23/379 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E ++G R Q+ KW+Y +F M+DI++ +R+ L Sbjct: 21 KINLLDLNRQQMREFFKEMG----EKPFRADQVMKWMYHYCSDNFDDMTDINKVLRNKLK 76 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+ Sbjct: 77 EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 130 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G V + R I+N+VMM Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AVKATGVRPITNVVMM 180 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 181 GMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 240 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L Sbjct: 241 PNDEIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMGYGFTTIVRKTRGDDIDAACG 360 Query: 364 QLKSLS-KRIPKVPRQEMQ 381 QL R + R+ MQ Sbjct: 361 QLAGDVIDRTKRTLRKRMQ 379 >gi|311278552|ref|YP_003940783.1| radical SAM enzyme, Cfr family [Enterobacter cloacae SCF1] gi|308747747|gb|ADO47499.1| radical SAM enzyme, Cfr family [Enterobacter cloacae SCF1] Length = 388 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 160/383 (41%), Positives = 217/383 (56%), Gaps = 23/383 (6%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 N K +L+ + R++L E +G R Q+ KW+Y +F M+DI++ +R Sbjct: 17 NKDAKINLLDLNRQQLREFFHNLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLR 72 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L + I P++V+E+ S DGT KW + +ETVYIPE R TLCVSSQ Sbjct: 73 GKLKEVAEIRAPDVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQ 126 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC+L C FC T Q RNL EI+ QV A ++G + R I+N Sbjct: 127 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AAKVTGQRPITN 176 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 +VMMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAI Sbjct: 177 VVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAI 236 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299 SLHA ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A Sbjct: 237 SLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHA 296 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI Sbjct: 297 HQLAELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMNYGFTTIVRKTRGDDID 356 Query: 360 AACGQLKSLS-KRIPKVPRQEMQ 381 AACGQL R + R+ MQ Sbjct: 357 AACGQLAGDVIDRTKRTMRKRMQ 379 >gi|197285703|ref|YP_002151575.1| ribosomal RNA large subunit methyltransferase N [Proteus mirabilis HI4320] gi|227356214|ref|ZP_03840603.1| Fe-S-cluster oxidoreductase [Proteus mirabilis ATCC 29906] gi|254807194|sp|B4EZT6|RLMN_PROMH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|194683190|emb|CAR43831.1| radical SAM superfamily protein [Proteus mirabilis HI4320] gi|227163678|gb|EEI48594.1| Fe-S-cluster oxidoreductase [Proteus mirabilis ATCC 29906] Length = 393 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 163/384 (42%), Positives = 223/384 (58%), Gaps = 23/384 (5%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 +N K +L+ + R+++ E + +G R QI KWIY DF M+DI++ + Sbjct: 21 VNQKTKINLLDLNRKQMRELFVSMG----EKPFRADQIMKWIYHYCYDDFDQMTDINKVL 76 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L + I PE+ +E+ S DGT KW ++ G ++ETVYIPE R TLCVSS Sbjct: 77 RAKLKEIAEIKAPEVSEEQRSADGTIKWAIKV------GSQQVETVYIPEDDRATLCVSS 130 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC+L C FC T Q RNL EI+ QV A ++G + + R I+ Sbjct: 131 QVGCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAKIIG----------ALKETGRRPIT 180 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N +NV +L I D G SKRR+T+STSG VP + ++ + + V LA Sbjct: 181 NVVMMGMGEPLLNLNNVIPALEIMMDDFGFGLSKRRVTVSTSGVVPALDKLADAVDVALA 240 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRD 298 ISLHA ++D+R+ +VPIN+KY +EM +D R Y SNA R+T EYVML INDS Sbjct: 241 ISLHAPTDDIRDEIVPINKKYNIEMFLDGVRRYIAKSNANQGRVTVEYVMLDHINDSTEQ 300 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L + LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI Sbjct: 301 AHQLAECLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDI 360 Query: 359 LAACGQLKSLS-KRIPKVPRQEMQ 381 AACGQL R + ++ +Q Sbjct: 361 DAACGQLAGDVIDRTKRTLKKRLQ 384 >gi|34498996|ref|NP_903211.1| hypothetical protein CV_3541 [Chromobacterium violaceum ATCC 12472] gi|81654669|sp|Q7NS85|RLMN_CHRVO RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|34104846|gb|AAQ61203.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 364 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 158/377 (41%), Positives = 221/377 (58%), Gaps = 20/377 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ ++L + ++G R Q+ +W++ DF M+D+++ +R L+ Sbjct: 2 KTNLLDFNLDQLTQHFAEMG----EKPFRAKQVMRWMHQMAEDDFDAMTDLAKSLRAKLH 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + P ++ + S DGTRKWLL +G +ETV+IPE RGTLCVSSQVGC+ Sbjct: 58 ERAEVRVPSLMTGQASSDGTRKWLL-----DVGTGNGVETVFIPEDDRGTLCVSSQVGCA 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC TG Q RNL+ EI+ Q+ A +G V P R +SN+VMM Sbjct: 113 LECTFCSTGRQGFNRNLSTAEIIGQLWWANKAMG-----------VTPKNERVVSNVVMM 161 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ I D G S+RR+TLSTSG VP + R+ EE V LA+SLHA Sbjct: 162 GMGEPLANFDNVVSAMQIMLDDHGYGLSRRRVTLSTSGLVPQMDRLREECPVALAVSLHA 221 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ +R+++VPIN+KYPL L+ ACR Y + ITFEYVML G+ND P A L+++ Sbjct: 222 PNDAIRDVIVPINKKYPLSELMAACRRYLEKAPRDFITFEYVMLDGVNDRPEHARQLLEL 281 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 ++ +P K NLIPFNP+P Y S I F E ++ GY +R RG DI AACGQL Sbjct: 282 VRDVPCKFNLIPFNPFPNSGYDRSSNNAIRIFREILQEQGYVVTVRKTRGDDIDAACGQL 341 Query: 366 KSLSKRIPKVPRQEMQI 382 + + + QI Sbjct: 342 AGQVQDKTRRQAKWTQI 358 >gi|295097942|emb|CBK87032.1| 23S rRNA m(2)A-2503 methyltransferase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 388 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 158/379 (41%), Positives = 216/379 (56%), Gaps = 23/379 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E ++G R Q+ KW+Y +F M+DI++ +R+ L Sbjct: 21 KINLLDLNRQQMREFFKEMG----EKPFRADQVMKWMYHYCSDNFDDMTDINKVLRNKLK 76 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+ Sbjct: 77 EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 130 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + R I+N+VMM Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGTRPITNVVMM 180 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 181 GMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 240 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++ +R+ +VPIN+KY +E + R Y SNA R+T EYVML +ND A L Sbjct: 241 PNDAIRDEIVPINKKYNIETFLAGVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHELA 300 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACG 360 Query: 364 QLKSLS-KRIPKVPRQEMQ 381 QL R + R+ MQ Sbjct: 361 QLAGDVIDRTKRTLRKRMQ 379 >gi|157374568|ref|YP_001473168.1| hypothetical protein Ssed_1429 [Shewanella sediminis HAW-EB3] gi|205829886|sp|A8FT67|RLMN_SHESH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|157316942|gb|ABV36040.1| radical SAM enzyme, Cfr family [Shewanella sediminis HAW-EB3] Length = 373 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 164/385 (42%), Positives = 225/385 (58%), Gaps = 25/385 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+ L ++G R Q+ KWIY G DF M++I++ +R L Sbjct: 4 KKINLLDLDRKGLRALFTEMG----EKPFRADQLMKWIYHFGETDFDAMNNINKVLRAKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + ++ PEI + S DGT K+ + +G E+ETVYIPE+ R TLCVSSQVGC Sbjct: 60 SARCEVVAPEISSYQKSADGTIKFAI-----NVGQGQEVETVYIPEEDRATLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV + +G + R I+N+VM Sbjct: 115 ALECTFCSTAQQGFNRNLTVSEIIGQVWRVANFIG----------FQKETGERPITNVVM 164 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G S SKRR+T+STSG VP + ++G+ + V LA+S+H Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTVSTSGVVPALDKLGDALDVALAVSIH 224 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302 A +++LR++LVP+N+KYPLE + R Y SN R+T EYVML INDS A L Sbjct: 225 APNDELRDVLVPVNKKYPLEEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHEL 284 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K++K P KINLIPFNP+PG Y S I FS+ + G + +R RG DI AAC Sbjct: 285 AKLMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAAC 344 Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383 GQL + +KR+ K Q+ QI+ Sbjct: 345 GQLAGDIRDRTKRLAKKRMQDSQIS 369 >gi|294637694|ref|ZP_06715971.1| radical SAM enzyme, Cfr family [Edwardsiella tarda ATCC 23685] gi|291089124|gb|EFE21685.1| radical SAM enzyme, Cfr family [Edwardsiella tarda ATCC 23685] Length = 411 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 159/379 (41%), Positives = 212/379 (55%), Gaps = 23/379 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+++ E +G R QI KWIY DF M+DI++ +R L Sbjct: 43 EKINLLDLNRKQMREFFAAMG----EKPFRADQIMKWIYHYCCDDFDAMTDINKVLRAKL 98 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q I PE+ E+ S DGT KW L+ +ETVYIPE R TLCVSSQVGC Sbjct: 99 KQVAEIRAPEVAVEQRSSDGTIKWALQVGD------QRVETVYIPEDDRATLCVSSQVGC 152 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNL EI+ QV A ++G + R I+N+VM Sbjct: 153 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AQKVTGNRPITNVVM 202 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 203 MGMGEPLLNMTNVIPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 262 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++ +R+ +VPINRKY +E + + R Y SNA R+T EYVML +ND A L Sbjct: 263 APNDAIRDQIVPINRKYNIETFLASVRRYLEKSNANQGRVTVEYVMLDHVNDGTEHAHQL 322 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + LK P KINLIP+NP+PG + S I FS+ + G++ +R RG DI AAC Sbjct: 323 AECLKDTPCKINLIPWNPFPGAPFGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAAC 382 Query: 363 GQLKSLS-KRIPKVPRQEM 380 GQL R + +++ Sbjct: 383 GQLAGEVIDRTKRTLKKQA 401 >gi|261340821|ref|ZP_05968679.1| radical SAM enzyme, Cfr family [Enterobacter cancerogenus ATCC 35316] gi|288317247|gb|EFC56185.1| radical SAM enzyme, Cfr family [Enterobacter cancerogenus ATCC 35316] Length = 388 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 158/379 (41%), Positives = 216/379 (56%), Gaps = 23/379 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E ++G R Q+ KW+Y +F M+DI++ +R+ L Sbjct: 21 KINLLDLNRQQMREFFKEMG----EKPFRADQVMKWMYHYCSDNFDDMTDINKVLRNKLK 76 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+ Sbjct: 77 EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 130 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + R I+N+VMM Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGTRPITNVVMM 180 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 181 GMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 240 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++ +R+ +VPIN+KY +E + R Y SNA R+T EYVML +ND A L Sbjct: 241 PNDAIRDEIVPINKKYNIETFLAGVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHELA 300 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACG 360 Query: 364 QLKSLS-KRIPKVPRQEMQ 381 QL R + R+ MQ Sbjct: 361 QLAGDVIDRTKRTLRKRMQ 379 >gi|209763358|gb|ACI79991.1| hypothetical protein ECs3379 [Escherichia coli] gi|320646304|gb|EFX15231.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli O157:H- str. 493-89] gi|320651809|gb|EFX20189.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli O157:H- str. H 2687] Length = 384 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 158/382 (41%), Positives = 216/382 (56%), Gaps = 23/382 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKTFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+ Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + R I+N+VMM Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+P Y S I FS+ + G+++ +R RG DI AACG Sbjct: 297 ELLKDTPCKINLIPWNPFPAAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356 Query: 364 QLKSLS-KRIPKVPRQEMQITG 384 QL R + R+ MQ Sbjct: 357 QLAGDVIDRTKRTLRKRMQGEA 378 >gi|251788745|ref|YP_003003466.1| ribosomal RNA large subunit methyltransferase N [Dickeya zeae Ech1591] gi|247537366|gb|ACT05987.1| radical SAM enzyme, Cfr family [Dickeya zeae Ech1591] Length = 392 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 161/383 (42%), Positives = 218/383 (56%), Gaps = 23/383 (6%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 N +K +L+ R+++ ++G R Q+ KWIY DF M+DI++ +R Sbjct: 21 NSNEKINLLDFNRQQMRAFFAELG----EKPFRADQVMKWIYHYCCDDFNQMTDINKVLR 76 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L I PE+VDE+ S DGT KW + + +ETVYIPE+ R TLCVSSQ Sbjct: 77 GKLQAIAEIRAPEVVDEQRSSDGTIKWAI------LVDGQRVETVYIPEEDRATLCVSSQ 130 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC+L C FC T Q RNL EI+ QV A ++G + R I+N Sbjct: 131 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AAKVTGQRPITN 180 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 +VMMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAI Sbjct: 181 VVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAI 240 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299 SLHA ++++RN ++PIN+KY +E + A R Y SNA R+T EYVML IND A Sbjct: 241 SLHAPTDEIRNEIMPINKKYDIETFLAAVRRYLDKSNANQGRVTVEYVMLDHINDGTEHA 300 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI Sbjct: 301 HQLAECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDID 360 Query: 360 AACGQLKSL-SKRIPKVPRQEMQ 381 AACGQL R + +++MQ Sbjct: 361 AACGQLAGEVVDRTKRTLKKKMQ 383 >gi|227328680|ref|ZP_03832704.1| hypothetical protein PcarcW_15616 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 418 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 162/379 (42%), Positives = 220/379 (58%), Gaps = 23/379 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+++ + + +G R Q+ KWIY DF M+DI++ R L Sbjct: 50 EKINLLDLNRQQMRDLFMSMG----EKPFRADQVMKWIYHYCCDDFNQMTDINKVFRSKL 105 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PE+VDE+ S DGT KW + + G +ETVYIPE+ R TLCVSSQVGC Sbjct: 106 QEIAEIRAPEVVDEQRSSDGTIKWAI------LVGGQRVETVYIPEEDRATLCVSSQVGC 159 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNL EI+ QV A ++G F + R I+N+VM Sbjct: 160 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFKV----------TGQRPITNVVM 209 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 210 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 269 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++D+RN ++PIN+KY +E + A R Y SNA R+T EYVML IND A L Sbjct: 270 APTDDIRNEIMPINKKYNIETFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQL 329 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AAC Sbjct: 330 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 389 Query: 363 GQLKSL-SKRIPKVPRQEM 380 GQL R + +++M Sbjct: 390 GQLAGEVVDRTKRTLKKKM 408 >gi|146312652|ref|YP_001177726.1| hypothetical protein Ent638_3011 [Enterobacter sp. 638] gi|205829755|sp|A4WD95|RLMN_ENT38 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|145319528|gb|ABP61675.1| 23S rRNA m(2)A-2503 methyltransferase [Enterobacter sp. 638] Length = 388 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 159/379 (41%), Positives = 219/379 (57%), Gaps = 23/379 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E L++G R Q+ KW+Y +F M+DI++ +R+ L Sbjct: 21 KINLLDLNRQQMREFFLEMG----EKPFRADQVMKWMYHYCSDNFDDMTDINKVLRNKLK 76 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I PE+V+E+ S DGT KW + +ETVYIPE+ R TLCVSSQVGC+ Sbjct: 77 DVAEIRAPEVVEEQRSADGTIKWAIAVGD------QRVETVYIPEEDRATLCVSSQVGCA 130 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + R I+N+VMM Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGTRPITNVVMM 180 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 181 GMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 240 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VP+N+KY +E + A R Y SNA R+T EYVML +ND A L Sbjct: 241 PNDEIRDEIVPVNKKYNIETFLAAVRRYLAKSNANQGRVTIEYVMLDHVNDETDHAHQLA 300 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTTIVRKTRGDDIDAACG 360 Query: 364 QLKSLS-KRIPKVPRQEMQ 381 QL R + R+ MQ Sbjct: 361 QLAGDVIDRTKRTLRKRMQ 379 >gi|152971378|ref|YP_001336487.1| ribosomal RNA large subunit methyltransferase N [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238895973|ref|YP_002920709.1| ribosomal RNA large subunit methyltransferase N [Klebsiella pneumoniae NTUH-K2044] gi|262040254|ref|ZP_06013505.1| cfr family radical SAM enzyme [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330007776|ref|ZP_08306073.1| 23S rRNA m2A2503 methyltransferase [Klebsiella sp. MS 92-3] gi|205829779|sp|A6TCD6|RLMN_KLEP7 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|150956227|gb|ABR78257.1| putative pyruvate formate lyase activating enzyme 2 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238548291|dbj|BAH64642.1| putative pyruvate formate lyase activating enzyme 2 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259042363|gb|EEW43383.1| cfr family radical SAM enzyme [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328535320|gb|EGF61805.1| 23S rRNA m2A2503 methyltransferase [Klebsiella sp. MS 92-3] Length = 388 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 161/386 (41%), Positives = 219/386 (56%), Gaps = 23/386 (5%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 N K +L+ + R+++ E +G R Q+ KW+Y DF M+DI++ +R Sbjct: 17 NKDAKINLLDLNRQQMREFFKNMG----EKPFRADQVMKWMYHYCCDDFDEMTDINKVLR 72 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L + I PE+V+E+ S DGT KW + +ETVYIPE+ R TLCVSSQ Sbjct: 73 SKLKEVAEIRAPEVVEEQRSTDGTIKWAIAVGD------QRVETVYIPEEDRATLCVSSQ 126 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC+L C FC T Q RNL EI+ QV A ++G V + R I+N Sbjct: 127 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AVKTTGVRPITN 176 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 +VMMGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAI Sbjct: 177 VVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAI 236 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299 SLHA ++ +R+ +VPIN+KY +E +++ R Y SNA R+T EYVML +ND A Sbjct: 237 SLHAPNDTIRDEIVPINKKYNIETFLNSVRGYISKSNANQGRVTIEYVMLDHVNDGTEHA 296 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L +LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI Sbjct: 297 HELAALLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDID 356 Query: 360 AACGQLKSLS-KRIPKVPRQEMQITG 384 AACGQL R + R+ MQ Sbjct: 357 AACGQLAGDVIDRTKRTLRKRMQGEA 382 >gi|327481756|gb|AEA85066.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas stutzeri DSM 4166] Length = 382 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 169/374 (45%), Positives = 222/374 (59%), Gaps = 21/374 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ + +LE IG R R Q+ KWI+ G+ DF MS++ + +R L Sbjct: 7 KVNLLGLTQPQLESFFESIG----EKRFRAGQVMKWIHHFGVDDFDAMSNLGKALREKLK 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I PEIV E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 63 ACAEIRGPEIVSEDISSDGTRKWVVR-----VASGSCVETVYIPQGGRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV +A G P D R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGTVPAKID----------RAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ I D +G SKR++TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVVAAMQIMMDDLGYGISKRKVTLSTSGVVPMIDELAKVIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304 ++ LR+ LVPIN+KYPL++L+ AC+ Y +R+ T EY +LKG+ND P A +I Sbjct: 228 PNDALRDQLVPINKKYPLDVLLAACKRYVSRLGEKRVLTIEYTLLKGVNDQPEHAEQMIA 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L IP KINLIPFNP+P Y I F + + + G++ +RT RG DI AACGQ Sbjct: 288 LLADIPCKINLIPFNPFPHSGYERPSNNAIRRFQDILHKGGHNVTVRTTRGEDIDAACGQ 347 Query: 365 LKSLS-KRIPKVPR 377 L R + R Sbjct: 348 LVGQVLDRTRRSER 361 >gi|332971507|gb|EGK10457.1| cfr family radical SAM enzyme [Kingella kingae ATCC 23330] Length = 364 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 162/377 (42%), Positives = 222/377 (58%), Gaps = 20/377 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ L E ++G R Q+ +WI+ G +F+ M+D+++ +R L Sbjct: 2 KTNLLNYDLPALTEHFAQMG----EKPFRAKQVMRWIHQGGAENFEQMTDLAKSLRAKLE 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 Q + P ++ + S DGTRKWLL +G +ETV+IPE RGTLC+SSQVGC+ Sbjct: 58 QQAEVGIPALMTSQESKDGTRKWLL-----DVGTGNGVETVFIPETERGTLCISSQVGCA 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC TG Q RNL+A EI+ Q+ A LG V P R ISN+VMM Sbjct: 113 LECTFCSTGRQGFNRNLSAAEIIGQLWWANKALG-----------VTPKNERVISNVVMM 161 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N+DNV +LSI D G S+RR+T+STSG VP + R+ E++ V LA+SLHA Sbjct: 162 GMGEPLANYDNVITALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEDMPVALAVSLHA 221 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ +R+ +VP+N+KYPL+ L+ AC Y + ITFEYVML G+ND P A L+++ Sbjct: 222 SNDKVRDEIVPLNKKYPLKELMAACNRYLVKAPRDFITFEYVMLDGVNDKPEHARELVEL 281 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +K P K NLIPFNP+P Y S K+I F E + + + +R RG DI AACGQL Sbjct: 282 VKDTPCKFNLIPFNPFPNSGYERSSNKNINIFKEILMEADLVTTVRKTRGDDIDAACGQL 341 Query: 366 KSLSKRIPKVPRQEMQI 382 K K + QI Sbjct: 342 AGQVKDKTKRQEKWQQI 358 >gi|152989129|ref|YP_001346692.1| hypothetical protein PSPA7_1308 [Pseudomonas aeruginosa PA7] gi|205829634|sp|A6V0V7|RLMN_PSEA7 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|150964287|gb|ABR86312.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7] Length = 378 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 170/374 (45%), Positives = 227/374 (60%), Gaps = 21/374 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ + +LE+ IG R R Q+ KWI+ G+ DF M+++ + +R L Sbjct: 7 KVNLLGLTQPQLEQFFESIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVGKALREKLK 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I PEIV + IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 63 AFAEIRGPEIVSQDISADGTRKWVVR-----VASGSCVETVYIPQGGRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q +L+A E++ QV +A G P D R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSDLSAAEVIGQVWIANKSFGTVPAKID----------RAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV +++I D +G SKR++TLSTSG VP I ++GE I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVVAAMNIMMDDLGYGISKRKVTLSTSGVVPMIDKLGEVIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304 +++LRN LVPIN+KYPL ML+DACR Y +R+ T EY +LK +ND P A +I Sbjct: 228 PNDELRNRLVPINKKYPLTMLLDACRRYISRLGEKRVLTVEYTLLKDVNDQPEHAEQMIA 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK P KINLIPFNP+P Y I F + + + G++ +RT RG DI AACGQ Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHKGGFNVTVRTTRGDDIDAACGQ 347 Query: 365 L-KSLSKRIPKVPR 377 L + R + R Sbjct: 348 LVGQVMDRTRRSER 361 >gi|224826446|ref|ZP_03699548.1| radical SAM enzyme, Cfr family [Lutiella nitroferrum 2002] gi|224601547|gb|EEG07728.1| radical SAM enzyme, Cfr family [Lutiella nitroferrum 2002] Length = 364 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 158/378 (41%), Positives = 222/378 (58%), Gaps = 20/378 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ +L + +G R Q+ +W++ G DF M+DI++ +R L+ Sbjct: 2 KTNLLDFNLAQLTDHFAAMG----EKPFRAKQVMRWMHQMGEADFDAMTDIAKSLRCKLH 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + P+++ E+ S DGTRKWLL +G +ETV+IPE RGTLC+SSQVGC+ Sbjct: 58 ESAEVRVPDLMVEQASSDGTRKWLL-----DVGTGNGVETVFIPEDDRGTLCISSQVGCA 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC TG Q RNL+ EI+ Q+ A +G V P R ISN+VMM Sbjct: 113 LECTFCSTGRQGFNRNLSTAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV +L I D G S+RR+T+STSG VP + R+ E V LA+SLHA Sbjct: 162 GMGEPLANFDNVVSALQIMLDDHGYGLSRRRVTVSTSGMVPQMDRLREACPVALAVSLHA 221 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ +R+++VPIN+KYPL L+ AC+ Y + +TFEYVML +ND P A LI++ Sbjct: 222 PNDAIRDVIVPINKKYPLRELMAACQRYLEKAPRDFVTFEYVMLDDVNDRPEHARQLIEL 281 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +K +P K NLIPFNP+P Y S I F E ++ +GY +R RG DI AACGQL Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYERSSNNAIHRFREILQEAGYVVTVRKTRGDDIDAACGQL 341 Query: 366 KSLSKRIPKVPRQEMQIT 383 + + + ++I Sbjct: 342 AGQVQDKTRRKTKWIRIE 359 >gi|161502321|ref|YP_001569433.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|205829874|sp|A9MHL3|RLMN_SALAR RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|160863668|gb|ABX20291.1| hypothetical protein SARI_00353 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 388 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 160/386 (41%), Positives = 216/386 (55%), Gaps = 23/386 (5%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 N K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R Sbjct: 17 NNEAKINLLDLNRQQMREFFKNLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLR 72 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L + I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQ Sbjct: 73 GKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQ 126 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC+L C FC T Q RNL EI+ QV A ++G + R I+N Sbjct: 127 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITN 176 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 +VMMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAI Sbjct: 177 VVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAI 236 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299 SLHA ++ +R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A Sbjct: 237 SLHAPNDAIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHA 296 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI Sbjct: 297 HQLAELLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDID 356 Query: 360 AACGQLKSLS-KRIPKVPRQEMQITG 384 AACGQL R + R+ MQ Sbjct: 357 AACGQLAGDVIDRTKRTLRKRMQGEA 382 >gi|308050460|ref|YP_003914026.1| 23S rRNA m(2)A-2503 methyltransferase [Ferrimonas balearica DSM 9799] gi|307632650|gb|ADN76952.1| 23S rRNA m(2)A-2503 methyltransferase [Ferrimonas balearica DSM 9799] Length = 372 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 163/385 (42%), Positives = 221/385 (57%), Gaps = 22/385 (5%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 K +L+ + R+ + ++G R Q+ KWIY G DF+ M++I++ +R Sbjct: 1 MTDKINLLNLDRKAMRAFFAEMG----EKPFRADQVMKWIYHFGADDFEQMTNINKALRA 56 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L + I+ PEI + S DGT K+ + +G E+ETVYIPE R TLCVSSQV Sbjct: 57 KLAERAVIVAPEISTSQHSSDGTIKFAI-----DVGNGQEVETVYIPESDRATLCVSSQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L CSFC T Q RNL+ EI+ QV LG + + R ISN+ Sbjct: 112 GCALECSFCSTAQQGFNRNLSVAEIIGQVWRVAKYLG----------LKNETGERPISNV 161 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAIS Sbjct: 162 VMMGMGEPLLNLSNVVPAMDIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAIS 221 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPRDAL 300 LHA +++LR++LVP+N+KY +E + + R Y S N R+T EYVML INDS A Sbjct: 222 LHAPNDELRDVLVPVNKKYNIETFLASVRTYLTKSYANKGRVTVEYVMLDHINDSTDQAH 281 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L K++K P KINLIPFNP+PG Y S I F++ + G + +R RG DI A Sbjct: 282 ELAKVMKDTPCKINLIPFNPYPGSPYGKSSNSRIDRFAKVLMEYGMTVIVRKTRGDDIDA 341 Query: 361 ACGQLKSLSK-RIPKVPRQEMQITG 384 ACGQL + R ++ ++ MQ G Sbjct: 342 ACGQLVGDVRDRTKRMLKKRMQEDG 366 >gi|213580692|ref|ZP_03362518.1| hypothetical protein SentesTyph_05537 [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 386 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 160/384 (41%), Positives = 217/384 (56%), Gaps = 23/384 (5%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 +N K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ + Sbjct: 16 LNNETKINLLDLNRQQMREFFKNLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVL 71 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L + I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSS Sbjct: 72 RGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSS 125 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC+L C FC T Q RNL EI+ QV A ++G + R I+ Sbjct: 126 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPIT 175 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LA Sbjct: 176 NVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALA 235 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRD 298 ISLHA ++ +R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND Sbjct: 236 ISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEH 295 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI Sbjct: 296 AHQLAELLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDI 355 Query: 359 LAACGQLKSLS-KRIPKVPRQEMQ 381 AACGQL R + R+ MQ Sbjct: 356 DAACGQLAGDVIDRTKRTLRKRMQ 379 >gi|226939612|ref|YP_002794685.1| hypothetical protein LHK_00683 [Laribacter hongkongensis HLHK9] gi|254807186|sp|C1DD41|RLMN_LARHH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|226714538|gb|ACO73676.1| Radical SAM domain containing protein [Laribacter hongkongensis HLHK9] Length = 366 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 154/379 (40%), Positives = 217/379 (57%), Gaps = 20/379 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ L E +G R Q+ +W++ G DF M+D+++ +R L+ Sbjct: 2 KTNLLDFTLPALTEHFAAMG----EKPFRAKQVMRWMHQMGQNDFDAMTDLAKSLRAKLH 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++ P ++ E+ S DGTRKWLL +G +ETV+IPE RGTLCVSSQVGC+ Sbjct: 58 DTATVTVPSLMLEQASSDGTRKWLL-----DVGTGNRVETVFIPEDDRGTLCVSSQVGCA 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC TG Q RNL+ EI+ Q+ A +G V P R ISN+VMM Sbjct: 113 LECTFCSTGRQGFNRNLSTAEIIGQLWWANKSMG-----------VTPKNERVISNVVMM 161 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N+DNV ++ I D G S+RR+TLSTSG VP + R+ E+ V LA+SLHA Sbjct: 162 GMGEPLANYDNVVAAMRIMLDDHGYGLSRRRVTLSTSGLVPAMDRLREDCPVALAVSLHA 221 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ +R+ +VPIN+KYPL L+ AC Y + +TFEYVML IND P A L+ + Sbjct: 222 PNDRIRDEIVPINKKYPLRELLAACERYLEKAPRDFVTFEYVMLDQINDRPEHARELVAL 281 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 ++ +P K NLIPFNP+P Y + + F + + +GY + +R RG DI AACGQL Sbjct: 282 VRDVPCKFNLIPFNPFPNSGYGRASNNAVRAFRDILAEAGYITTVRKTRGEDIDAACGQL 341 Query: 366 KSLSKRIPKVPRQEMQITG 384 + + + + G Sbjct: 342 AGQVQDKTQRKVRWLDKGG 360 >gi|206580011|ref|YP_002237132.1| radical SAM enzyme, Cfr family [Klebsiella pneumoniae 342] gi|288934092|ref|YP_003438151.1| radical SAM enzyme, Cfr family [Klebsiella variicola At-22] gi|290508289|ref|ZP_06547660.1| cfr family radical SAM enzyme [Klebsiella sp. 1_1_55] gi|254807185|sp|B5XNL2|RLMN_KLEP3 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|206569069|gb|ACI10845.1| radical SAM enzyme, Cfr family [Klebsiella pneumoniae 342] gi|288888821|gb|ADC57139.1| radical SAM enzyme, Cfr family [Klebsiella variicola At-22] gi|289777683|gb|EFD85680.1| cfr family radical SAM enzyme [Klebsiella sp. 1_1_55] Length = 388 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 161/386 (41%), Positives = 219/386 (56%), Gaps = 23/386 (5%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 N K +L+ + R+++ E +G R Q+ KW+Y DF M+DI++ +R Sbjct: 17 NKDAKINLLDLNRQQMREFFKNMG----EKPFRADQVMKWMYHYCCDDFDEMTDINKVLR 72 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L + I PE+V+E+ S DGT KW + +ETVYIPE+ R TLCVSSQ Sbjct: 73 GKLKEVAEIRAPEVVEEQRSTDGTIKWAIAVGD------QRVETVYIPEEDRATLCVSSQ 126 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC+L C FC T Q RNL EI+ QV A ++G V + R I+N Sbjct: 127 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AVKTTGVRPITN 176 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 +VMMGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAI Sbjct: 177 VVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAI 236 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299 SLHA ++ +R+ +VPIN+KY +E +++ R Y SNA R+T EYVML +ND A Sbjct: 237 SLHAPNDTIRDEIVPINKKYNIETFLNSVRGYISKSNANQGRVTIEYVMLDHVNDGTEHA 296 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L +LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI Sbjct: 297 HELAALLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDID 356 Query: 360 AACGQLKSLS-KRIPKVPRQEMQITG 384 AACGQL R + R+ MQ Sbjct: 357 AACGQLAGDVIDRTKRTLRKRMQGEA 382 >gi|296314505|ref|ZP_06864446.1| radical SAM enzyme, Cfr family [Neisseria polysaccharea ATCC 43768] gi|296838812|gb|EFH22750.1| radical SAM enzyme, Cfr family [Neisseria polysaccharea ATCC 43768] Length = 364 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 162/377 (42%), Positives = 231/377 (61%), Gaps = 20/377 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + L +G R Q+ +W++ G ++F M+D+++ +RH LN Sbjct: 2 KTNLLNYDLQGLTRHFADMG----EKPFRAKQVMRWMHQSGAQNFDEMTDLAKSLRHKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + SI P+++ + S DGTRKWLL +G +ETV+IPE RGTLC+SSQVGC+ Sbjct: 58 EQASIEIPKLMMSQESSDGTRKWLL-----DVGTGNGVETVFIPESDRGTLCISSQVGCA 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC TG Q RNLTA EI+ Q+ A +G V P R ISN+VMM Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEP+ NFDNV +LSI D G S+RR+T+STSG VP + R+ + + V LA+SLHA Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHA 221 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++RN +VP+N+KYPL+ L+ ACR Y + ITFEYVML GIND + A LI++ Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACRRYLVKAPRDFITFEYVMLDGINDRAQHARELIEL 281 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +K +P K NLIPFNP+P Y S ++I F + ++++G+ +R RG DI AACGQL Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341 Query: 366 KSLSKRIPKVPRQEMQI 382 + + ++ QI Sbjct: 342 AGQVQDKTRRQQKWQQI 358 >gi|313668447|ref|YP_004048731.1| hypothetical protein NLA_11430 [Neisseria lactamica ST-640] gi|313005909|emb|CBN87365.1| conserved hypothetical protein [Neisseria lactamica 020-06] Length = 364 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 161/377 (42%), Positives = 231/377 (61%), Gaps = 20/377 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + L +G R Q+ +WI+ G ++F M+D+++ +RH LN Sbjct: 2 KTNLLNYDLQGLIRHFADMG----EKPFRAKQVMRWIHQSGAQNFDEMTDLAKSLRHKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + +I P+++ + S DGTRKWLL +G +ETV+IPE RGTLC+SSQVGC+ Sbjct: 58 EQANIGIPKLMMSQESSDGTRKWLL-----DVGTGNGVETVFIPESERGTLCISSQVGCA 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC TG Q RNLTA EI+ Q+ A +G V P R ISN+VMM Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEP+ NFDNV +LSI D G S+RR+T+STSG VP + R+ + + V LA+SLHA Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHA 221 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++R+ +VP+N+KYPL+ L+ ACR Y + ITFEYVML GIND + A LI + Sbjct: 222 SNDEVRDQIVPLNKKYPLKELMAACRRYLVKAPRDFITFEYVMLDGINDKAQHAHELINL 281 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +K +P K NLIPFNP+P Y S +++I F + ++++G+ +R RG DI AACGQL Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYERSSKENIRVFKDILQQAGFVVTVRKTRGDDIDAACGQL 341 Query: 366 KSLSKRIPKVPRQEMQI 382 + + ++ QI Sbjct: 342 AGQVQDKTRRQQKWQQI 358 >gi|16761440|ref|NP_457057.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29140863|ref|NP_804205.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56412596|ref|YP_149671.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62181092|ref|YP_217509.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161612716|ref|YP_001586681.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167549454|ref|ZP_02343213.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168232093|ref|ZP_02657151.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168238262|ref|ZP_02663320.1| radical SAM enzyme, Cfr family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168243305|ref|ZP_02668237.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261436|ref|ZP_02683409.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168466724|ref|ZP_02700578.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168821500|ref|ZP_02833500.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194444721|ref|YP_002041783.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448097|ref|YP_002046583.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469426|ref|ZP_03075410.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194738017|ref|YP_002115587.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197361531|ref|YP_002141167.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198245006|ref|YP_002216589.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388216|ref|ZP_03214828.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204929473|ref|ZP_03220547.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353624|ref|YP_002227425.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857933|ref|YP_002244584.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213161946|ref|ZP_03347656.1| hypothetical protein Salmoneentericaenterica_18887 [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425329|ref|ZP_03358079.1| hypothetical protein SentesTyphi_06363 [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213649661|ref|ZP_03379714.1| hypothetical protein SentesTy_21620 [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213857325|ref|ZP_03384296.1| hypothetical protein SentesT_19305 [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224582938|ref|YP_002636736.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|289825424|ref|ZP_06544661.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|75481689|sp|Q57LI4|RLMN_SALCH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|81362045|sp|Q5PNI4|RLMN_SALPA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|81628152|sp|Q8Z4P2|RLMN_SALTI RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829875|sp|A9N1Z8|RLMN_SALPB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807202|sp|B5FR66|RLMN_SALDC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807203|sp|B5R584|RLMN_SALEP RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807204|sp|B5RCZ4|RLMN_SALG2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807205|sp|B4TD95|RLMN_SALHS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807206|sp|B4T0Q1|RLMN_SALNS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807207|sp|C0PYM8|RLMN_SALPC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807208|sp|B5BAY3|RLMN_SALPK RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807209|sp|B4TR97|RLMN_SALSV RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|25320182|pir||AD0822 conserved hypothetical protein STY2770 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503740|emb|CAD02728.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29136488|gb|AAO68054.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56126853|gb|AAV76359.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62128725|gb|AAX66428.1| putative Fe-S-cluster redox enzyme [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161362080|gb|ABX65848.1| hypothetical protein SPAB_00414 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403384|gb|ACF63606.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406401|gb|ACF66620.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194455790|gb|EDX44629.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194713519|gb|ACF92740.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630780|gb|EDX49372.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197093007|emb|CAR58440.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197288805|gb|EDY28178.1| radical SAM enzyme, Cfr family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197939522|gb|ACH76855.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605314|gb|EDZ03859.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321192|gb|EDZ06392.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205273405|emb|CAR38380.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205325472|gb|EDZ13311.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205333531|gb|EDZ20295.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205337567|gb|EDZ24331.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205342014|gb|EDZ28778.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349318|gb|EDZ35949.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709736|emb|CAR34088.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224467465|gb|ACN45295.1| hypothetical protein SPC_1129 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|320087020|emb|CBY96789.1| Ribosomal RNA large subunit methyltransferase N 23S rRNA m2A2503 methyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322613730|gb|EFY10669.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619527|gb|EFY16403.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625032|gb|EFY21861.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629525|gb|EFY26301.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634044|gb|EFY30781.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635518|gb|EFY32229.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639806|gb|EFY36485.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644428|gb|EFY40969.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648573|gb|EFY45022.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655207|gb|EFY51516.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658254|gb|EFY54520.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664255|gb|EFY60452.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669422|gb|EFY65571.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673149|gb|EFY69255.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676541|gb|EFY72609.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683291|gb|EFY79305.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685823|gb|EFY81816.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715579|gb|EFZ07150.1| Ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323194766|gb|EFZ79954.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199546|gb|EFZ84637.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204679|gb|EFZ89677.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208127|gb|EFZ93072.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210149|gb|EFZ95050.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217017|gb|EGA01739.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221815|gb|EGA06219.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225006|gb|EGA09261.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229295|gb|EGA13419.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235390|gb|EGA19474.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237424|gb|EGA21487.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245178|gb|EGA29179.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248881|gb|EGA32807.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253168|gb|EGA37000.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255402|gb|EGA39170.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262039|gb|EGA45604.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266350|gb|EGA49838.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269819|gb|EGA53269.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624345|gb|EGE30690.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628724|gb|EGE35067.1| Ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 388 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 160/384 (41%), Positives = 217/384 (56%), Gaps = 23/384 (5%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 +N K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ + Sbjct: 16 LNNETKINLLDLNRQQMREFFKNLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVL 71 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L + I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSS Sbjct: 72 RGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSS 125 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC+L C FC T Q RNL EI+ QV A ++G + R I+ Sbjct: 126 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPIT 175 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LA Sbjct: 176 NVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALA 235 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRD 298 ISLHA ++ +R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND Sbjct: 236 ISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEH 295 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI Sbjct: 296 AHQLAELLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDI 355 Query: 359 LAACGQLKSLS-KRIPKVPRQEMQ 381 AACGQL R + R+ MQ Sbjct: 356 DAACGQLAGDVIDRTKRTLRKRMQ 379 >gi|120554052|ref|YP_958403.1| radical SAM protein [Marinobacter aquaeolei VT8] gi|205829787|sp|A1TZP7|RLMN_MARAV RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|120323901|gb|ABM18216.1| 23S rRNA m(2)A-2503 methyltransferase [Marinobacter aquaeolei VT8] Length = 369 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 160/380 (42%), Positives = 230/380 (60%), Gaps = 21/380 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+GM + +LE +G R R Q+ +W++ RG+ DF M+++S+ +R L Sbjct: 6 EKVNLLGMPKAKLEAFFETLG----EKRFRAQQVLQWMHQRGVDDFDQMTNMSKSLREQL 61 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PE+V ++ S DGTRKW++R +ETV IP+ RGTLCVSSQ+GC Sbjct: 62 KEVAEIRGPEVVYDETSKDGTRKWVMRM-----DNGNSVETVLIPDGERGTLCVSSQIGC 116 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 SL C+FC TG + RNLTA EI+ QV +AR F + R I+N+VM Sbjct: 117 SLDCTFCSTGKRGFNRNLTAAEIIGQVWVARRAFMPFDPND-----------RPITNVVM 165 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NF+NV ++++ + + SKRR+TLSTSG VP + R+GE V LAISLH Sbjct: 166 MGMGEPLLNFENVVDAMNLMMEDLAYGISKRRVTLSTSGVVPALDRLGEVTDVSLAISLH 225 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYP-GLSNARRITFEYVMLKGINDSPRDALNLI 303 A +++LRN LVP+N+KYP+ L+ A R Y L + R+ T EY +++G+ND P A L+ Sbjct: 226 APNDELRNQLVPLNKKYPIAELLAATRRYLSRLPDKRKATIEYTVIEGVNDQPEHARELV 285 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LKG+P KINLIPFNP+P ++ F + +GY + IRT RG DI AACG Sbjct: 286 VLLKGLPCKINLIPFNPFPESDFRRPSMNATRRFQTVLNEAGYVTTIRTTRGDDIDAACG 345 Query: 364 QLKSLSKRIPKVPRQEMQIT 383 QL + + ++ + + Sbjct: 346 QLVGRVEDRTRRSQRYIAVQ 365 >gi|227112689|ref|ZP_03826345.1| hypothetical protein PcarbP_06994 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 418 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 161/379 (42%), Positives = 220/379 (58%), Gaps = 23/379 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+++ + + +G R Q+ KWIY DF M+DI++ R L Sbjct: 50 EKINLLDLNRQQMRDLFMSMG----EKPFRADQVMKWIYHYCCDDFNQMTDINKVFRSKL 105 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PE+VDE+ S DGT KW + + G +ETVYIPE+ R TLCVSSQVGC Sbjct: 106 QEIAEIRAPEVVDEQRSSDGTIKWAI------LVGGQRVETVYIPEEDRATLCVSSQVGC 159 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNL EI+ QV A ++G F + R I+N+VM Sbjct: 160 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFKV----------TGQRPITNVVM 209 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 210 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 269 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++D+RN ++PIN+KY +E + A R Y SNA R+T EYVML IND A L Sbjct: 270 APTDDIRNEIMPINKKYNIETFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQL 329 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AAC Sbjct: 330 AECLKNTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 389 Query: 363 GQLKSL-SKRIPKVPRQEM 380 GQL R + ++++ Sbjct: 390 GQLAGEVVDRTKRTLKKKL 408 >gi|329120380|ref|ZP_08249047.1| cfr family radical SAM enzyme [Neisseria bacilliformis ATCC BAA-1200] gi|327462335|gb|EGF08661.1| cfr family radical SAM enzyme [Neisseria bacilliformis ATCC BAA-1200] Length = 362 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 158/377 (41%), Positives = 228/377 (60%), Gaps = 20/377 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + L E ++G R Q+ +W++ G DF M+D+++ +R L Sbjct: 2 KNNLLNYDLKTLTEWFAEMG----ERPFRAKQVMRWMHWGGAADFAEMTDLAKSLRAKLE 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +H + P ++ + S DGTRKWLL +G +ETV+IPE RGTLC+SSQVGC+ Sbjct: 58 EHACVGAPALMASQESRDGTRKWLL-----DVGTGNGVETVFIPESERGTLCISSQVGCA 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC TG Q RNLT EI+ Q+ A LG P E R ISN+VMM Sbjct: 113 LECTFCSTGRQGFNRNLTTAEIVGQLWWANKALGATPKDE-----------RVISNVVMM 161 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N+DNV +SLS+ D G S+RR+T+STSG VP + R+ E++ V LA+SLHA Sbjct: 162 GMGEPLANYDNVVRSLSVMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEDMPVALAVSLHA 221 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ +R+ +VP+N+KYPL+ L+ ACR Y + +TFEYVML G+ND A L+K+ Sbjct: 222 SNDHVRDQIVPLNKKYPLKDLMAACRRYLVKAPRDFVTFEYVMLDGVNDKAEHARELLKL 281 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 ++ +P K NLIPFNP+P Y S ++I F + ++++G+ +R RG DI AACGQL Sbjct: 282 VEDVPCKFNLIPFNPFPHSGYERSSAENIRIFRDILQQAGFVVTVRKTRGDDIDAACGQL 341 Query: 366 KSLSKRIPKVPRQEMQI 382 K + ++ Q+ Sbjct: 342 AGQVKDKTRRQQKWQQL 358 >gi|261820570|ref|YP_003258676.1| ribosomal RNA large subunit methyltransferase N [Pectobacterium wasabiae WPP163] gi|261604583|gb|ACX87069.1| radical SAM enzyme, Cfr family [Pectobacterium wasabiae WPP163] Length = 400 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 164/379 (43%), Positives = 221/379 (58%), Gaps = 23/379 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+++ E + +G R Q+ KWIY DF M+DI++ R L Sbjct: 32 EKINLLDLNRQQMRELFMSMG----EKPFRADQVMKWIYHYCCDDFNQMTDINKVFRSKL 87 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PE+VDE+ S DGT KW + + G +ETVYIPE+ R TLCVSSQVGC Sbjct: 88 QEIAEIRAPEVVDEQRSSDGTIKWAI------LVGGQRVETVYIPEEDRATLCVSSQVGC 141 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNL EI+ QV A ++G F + R I+N+VM Sbjct: 142 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFKV----------TGQRPITNVVM 191 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 192 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 251 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++D+RN ++PIN+KY +EM + A R Y SNA R+T EYVML IND A L Sbjct: 252 APTDDIRNEIMPINKKYNIEMFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQL 311 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AAC Sbjct: 312 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 371 Query: 363 GQLKSL-SKRIPKVPRQEM 380 GQL R + +++M Sbjct: 372 GQLAGEVVDRTKRTLKKKM 390 >gi|330504682|ref|YP_004381551.1| radical SAM protein [Pseudomonas mendocina NK-01] gi|328918968|gb|AEB59799.1| radical SAM protein [Pseudomonas mendocina NK-01] Length = 382 Score = 465 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 167/378 (44%), Positives = 226/378 (59%), Gaps = 21/378 (5%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 N K +L+G+ + E+E+ IG R R Q+ KWI+ G+ DF M+++ + +R Sbjct: 3 NTTGKINLLGLTQPEMEQFFESIG----EKRFRAGQVMKWIHHFGVDDFAAMTNVGKALR 58 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L I PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ Sbjct: 59 EKLEASAEIRGPEVVSENISADGTRKWVVR-----VASGSCVETVYIPQNGRGTLCVSSQ 113 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC+L CSFC TG Q +LT+ EI+ QV +A G P D R I+N Sbjct: 114 AGCALDCSFCSTGKQGFNSDLTSAEIIGQVWIANKSFGTVPAKID----------RAITN 163 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 +VMMGMGEPL NFDNV ++ I D +G SKR++TLSTSG VP I ++ E I V LA+ Sbjct: 164 VVMMGMGEPLLNFDNVVSAMQIMMDDLGYGISKRKVTLSTSGVVPMIDKLAEVIDVSLAL 223 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDAL 300 SLHA +++LRN LVPIN+KYPL+ML+ AC+ Y +R+ T EY +LKG+ND A Sbjct: 224 SLHAPNDELRNQLVPINKKYPLDMLLAACKRYVSKLGEKRVLTIEYTLLKGVNDQLEHAE 283 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 +I +L +P KINLIPFNP+P Y I F + + ++G++ +R RG DI A Sbjct: 284 QMIALLADVPCKINLIPFNPFPFSGYERPSNNAIRRFQDLLHKAGHNVTVRATRGDDIDA 343 Query: 361 ACGQL-KSLSKRIPKVPR 377 ACGQL + R + R Sbjct: 344 ACGQLVGQVMDRTRRSER 361 >gi|253689386|ref|YP_003018576.1| radical SAM enzyme, Cfr family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755964|gb|ACT14040.1| radical SAM enzyme, Cfr family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 419 Score = 465 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 163/379 (43%), Positives = 221/379 (58%), Gaps = 23/379 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+++ + + +G R Q+ KWIY DF M+DI++ R L Sbjct: 51 EKINLLDLNRQQMRDLFISMG----EKPFRADQVMKWIYHYCCDDFNQMTDINKVFRSKL 106 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PE+VDE+ S DGT KW + + G +ETVYIPE+ R TLCVSSQVGC Sbjct: 107 QEIAEIRAPEVVDEQRSSDGTIKWAI------LVGGQRVETVYIPEEDRATLCVSSQVGC 160 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNL EI+ QV A ++G F + R I+N+VM Sbjct: 161 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFKV----------TGQRPITNVVM 210 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 211 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 270 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++D+RN ++PIN+KY +EM + A R Y SNA R+T EYVML IND A L Sbjct: 271 APTDDIRNEIMPINKKYNIEMFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQL 330 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AAC Sbjct: 331 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 390 Query: 363 GQLKSL-SKRIPKVPRQEM 380 GQL R + +++M Sbjct: 391 GQLAGEVVDRTKRTLKKKM 409 >gi|16765845|ref|NP_461460.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167991834|ref|ZP_02572933.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|197263041|ref|ZP_03163115.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|81594911|sp|Q8ZN52|RLMN_SALTY RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|16421069|gb|AAL21419.1| putative Fe-S-cluster redox enzyme [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197241296|gb|EDY23916.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205329931|gb|EDZ16695.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261247721|emb|CBG25549.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994643|gb|ACY89528.1| hypothetical protein STM14_3097 [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159074|emb|CBW18588.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913512|dbj|BAJ37486.1| 23S rRNA methyltransferase N [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321222774|gb|EFX47845.1| Ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323130853|gb|ADX18283.1| radical SAM superfamily protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332989452|gb|AEF08435.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 388 Score = 465 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 160/383 (41%), Positives = 216/383 (56%), Gaps = 23/383 (6%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 N K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R Sbjct: 17 NKETKINLLDLNRQQMREFFKNLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLR 72 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L + I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQ Sbjct: 73 GKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQ 126 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC+L C FC T Q RNL EI+ QV A ++G + R I+N Sbjct: 127 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITN 176 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 +VMMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAI Sbjct: 177 VVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAI 236 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299 SLHA ++ +R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A Sbjct: 237 SLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHA 296 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI Sbjct: 297 HQLAELLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDID 356 Query: 360 AACGQLKSLS-KRIPKVPRQEMQ 381 AACGQL R + R+ MQ Sbjct: 357 AACGQLAGDVIDRTKRTLRKRMQ 379 >gi|325272138|ref|ZP_08138570.1| radical SAM protein [Pseudomonas sp. TJI-51] gi|324102734|gb|EGC00149.1| radical SAM protein [Pseudomonas sp. TJI-51] Length = 381 Score = 465 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 168/374 (44%), Positives = 224/374 (59%), Gaps = 21/374 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ + E+E+ IG R R Q+ KWI+ G+ DF M+++ + +R L Sbjct: 7 KINLLGLTQPEMEQFFDSIG----EKRFRAGQVMKWIHHFGVSDFAAMTNVGKALREKLE 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I PE+V E IS DGTRKW++R + +ETVYIP RGTLCVSSQ GC+ Sbjct: 63 AVAEIRPPEVVSEDISADGTRKWVIR-----VASGSCVETVYIPTDDRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV LA G P D R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWLANKSFGTVPAKID----------RAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ I D +G SKRR+TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVIAAMKIMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304 +++LRN LVPIN+KYPL+ML+++C Y +R+ T EY +LK +ND P A +I+ Sbjct: 228 PNDELRNKLVPINKKYPLKMLLESCMGYMATLGGKRVLTIEYTLLKDVNDQPEHAAQMIE 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L+ +P KINLIPFNP+P Y I F + + G++ RT RG DI AACGQ Sbjct: 288 LLRDVPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQ 347 Query: 365 L-KSLSKRIPKVPR 377 L ++ R + R Sbjct: 348 LVGQVNDRTRRSER 361 >gi|126175195|ref|YP_001051344.1| ribosomal RNA large subunit methyltransferase N [Shewanella baltica OS155] gi|205829878|sp|A3D6W2|RLMN_SHEB5 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|125998400|gb|ABN62475.1| radical SAM enzyme, Cfr family [Shewanella baltica OS155] Length = 373 Score = 465 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 167/385 (43%), Positives = 224/385 (58%), Gaps = 25/385 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+ + +G R Q+ KW+Y G+ DF+ M++I++ +R L Sbjct: 4 KKINLLDLDRKAMRALFADMG----EKPFRADQLMKWLYHFGVSDFEEMTNINKVLRQKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I+ PEI + S DGT K+ + +G E+ETVYIPE R TLCVSSQVGC Sbjct: 60 AARCEIVAPEISSFQKSTDGTIKFAI-----NVGQGQEVETVYIPEDDRATLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC TG Q RNLT EI+ Q+ LG + R I+N+VM Sbjct: 115 ALECTFCSTGQQGFNRNLTVSEIVGQIWRVSHFLG----------FAKDTGERPITNVVM 164 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + ++G+ I V LA+S+H Sbjct: 165 MGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDAIDVALAVSIH 224 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302 A +++LR+ILVPIN+KY L+ + R Y SN R+T EYVML INDS A L Sbjct: 225 APNDELRDILVPINKKYQLDEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHEL 284 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K++K P KINLIPFNP+PG Y S I FS+ + G++ +R RG DI AAC Sbjct: 285 AKLMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAAC 344 Query: 363 GQL----KSLSKRIPKVPRQEMQIT 383 GQL + +KR+ K QE QI+ Sbjct: 345 GQLAGDIRDRTKRLAKKRMQENQIS 369 >gi|307132063|ref|YP_003884079.1| 23S rRNA m(2)A2503 methyltransferase [Dickeya dadantii 3937] gi|306529592|gb|ADM99522.1| 23S rRNA m(2)A2503 methyltransferase [Dickeya dadantii 3937] Length = 392 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 160/383 (41%), Positives = 218/383 (56%), Gaps = 23/383 (6%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 N +K +L+ R+++ ++G R Q+ KW+Y DF M+DI++ +R Sbjct: 21 NSNEKINLLDFNRQQMRAFFAELG----EKPFRADQVMKWMYHYCCDDFNQMTDINKVLR 76 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L I PE+VDE+ S DGT KW + + +ETVYIPE+ R TLCVSSQ Sbjct: 77 GKLQAIAEIRAPEVVDEQRSSDGTIKWAI------LVDGQRVETVYIPEEDRATLCVSSQ 130 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC+L C FC T Q RNL EI+ QV A ++G + R I+N Sbjct: 131 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AAKVTGQRPITN 180 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 +VMMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAI Sbjct: 181 VVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAI 240 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299 SLHA ++++RN ++PIN+KY +E + A R Y SNA R+T EYVML IND A Sbjct: 241 SLHAPTDEIRNEIMPINKKYDIETFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHA 300 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI Sbjct: 301 HQLAECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDID 360 Query: 360 AACGQLKSL-SKRIPKVPRQEMQ 381 AACGQL R + +++MQ Sbjct: 361 AACGQLAGEVVDRTKRTLKKKMQ 383 >gi|317490866|ref|ZP_07949302.1| cfr family radical SAM enzyme [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920413|gb|EFV41736.1| cfr family radical SAM enzyme [Enterobacteriaceae bacterium 9_2_54FAA] Length = 419 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 159/382 (41%), Positives = 220/382 (57%), Gaps = 23/382 (6%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 N +K +L+ + R+++ E K+G R Q+ KW+Y +F M+DI++ +R Sbjct: 48 NTSEKINLLDLDRQQMREFFAKLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLR 103 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 + L + I PE+ +E+ S DGT KW ++ +ETVYIPE R TLCVSSQ Sbjct: 104 NKLKEIAEIRAPEVAEEQRSTDGTIKWAIQVGD------QRVETVYIPEDDRATLCVSSQ 157 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC+L C FC T Q RNL EI+ QV A ++G + R I+N Sbjct: 158 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AHKVTGQRPITN 207 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 +VMMGMGEPL N +NV +++I D G SKRR+TLSTSG VP + ++G+ I V LAI Sbjct: 208 VVMMGMGEPLLNLNNVVPAMNIMLDDFGFGLSKRRVTLSTSGVVPALEKLGDMIDVALAI 267 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299 SLHA ++++R+ +VPINRKY +E + A R Y SNA R+T EYVML IND A Sbjct: 268 SLHAPTDEIRDEIVPINRKYNIETFLGAVRRYLEKSNANQGRVTVEYVMLDHINDGMEHA 327 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L + LK P KINLIP+NP+PG Y S + FS+ + G++ +R RG DI Sbjct: 328 HQLAECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTVIVRKTRGDDID 387 Query: 360 AACGQLKSLS-KRIPKVPRQEM 380 AACGQL R + +++M Sbjct: 388 AACGQLAGDVIDRTKRTMKKKM 409 >gi|330969073|gb|EGH69139.1| hypothetical protein PSYAR_01077 [Pseudomonas syringae pv. aceris str. M302273PT] Length = 382 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 170/374 (45%), Positives = 228/374 (60%), Gaps = 21/374 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ ++E+E+ IG R R Q+ KWI+ G+ DF M+++S+ +R L Sbjct: 7 KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 63 ACAEVRGPEVVSEDISSDGTRKWVVRVES-----GSCVETVYIPQGKRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV +A G P D R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304 ++ LRN LVPIN+KYPL+ML+++CR Y +R+ T EY MLK IND A+ +I+ Sbjct: 228 PNDALRNQLVPINKKYPLKMLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK P KINLIPFNP+P Y I F + + ++GY+ +RT RG DI AACGQ Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347 Query: 365 L-KSLSKRIPKVPR 377 L + R + R Sbjct: 348 LVGQVMDRTRRSER 361 >gi|289626156|ref|ZP_06459110.1| radical SAM protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649062|ref|ZP_06480405.1| radical SAM protein [Pseudomonas syringae pv. aesculi str. 2250] gi|330869580|gb|EGH04289.1| radical SAM protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 382 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 171/374 (45%), Positives = 228/374 (60%), Gaps = 21/374 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ ++E+E+ IG R R Q+ KWI+ G+ DF M+++S+ +R L Sbjct: 7 KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 63 ACAEVRGPEVVSEDISSDGTRKWVVRVES-----GSCVETVYIPQGKRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV +A G P D R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304 ++ LRN LVPIN+KYPL+ML+D+CR Y +R+ T EY MLK IND A+ +I+ Sbjct: 228 PNDALRNQLVPINKKYPLQMLLDSCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK P KINLIPFNP+P Y I F + + ++GY+ +RT RG DI AACGQ Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347 Query: 365 L-KSLSKRIPKVPR 377 L + R + R Sbjct: 348 LVGQVMDRTRRSER 361 >gi|167644157|ref|YP_001681820.1| radical SAM protein [Caulobacter sp. K31] gi|205829696|sp|B0T387|RLMN_CAUSK RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|167346587|gb|ABZ69322.1| radical SAM enzyme, Cfr family [Caulobacter sp. K31] Length = 404 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 197/380 (51%), Positives = 270/380 (71%), Gaps = 16/380 (4%) Query: 7 ESLIGMMREELEEALLKIGIPQRHV-RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 +L G+ R +L AL + G+ + +MR +QI++W++ RG+ DF M+D+++E R L Sbjct: 26 INLSGLTRAQLLVALTESGVAEHGKAKMRATQIFRWMHHRGVTDFALMTDVAKETRARLA 85 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGC 124 + F++ PE+V+ ++S DGTRKWL+R +E+ETVYIP R G LCVSSQVGC Sbjct: 86 ERFTVSRPEVVERQVSKDGTRKWLIRMAP-----GIEVETVYIPSVGRAGALCVSSQVGC 140 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L CSFC+TGTQ LVRNLTA EI+ QV +A+ L ++P ++ R +SNIV Sbjct: 141 TLNCSFCHTGTQALVRNLTAAEIVAQVQIAKDDLAEWPSDKE---------DRLLSNIVF 191 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +V ++ I SD+ G+ S+RRIT+STSG VP + +G++ MLAISLH Sbjct: 192 MGMGEPLYNLGHVADAIEIISDNEGIGISRRRITVSTSGVVPQLEALGDKTQAMLAISLH 251 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++ LR++LVP+N+KYPLE L+ R YPGLSNARR+TFEYVMLKG+NDSP +A L+K Sbjct: 252 ATNDALRDVLVPLNKKYPLEDLMAGVRAYPGLSNARRVTFEYVMLKGVNDSPDEARALVK 311 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 ++KGIPAKINLIPFNPWPG +Y+CSD I F + ++GYSSPIRTPRG DILAACGQ Sbjct: 312 LIKGIPAKINLIPFNPWPGTDYVCSDWAAIEAFGAILNKAGYSSPIRTPRGRDILAACGQ 371 Query: 365 LKSLSKRIPKVPRQEMQITG 384 LKS S+++ +++ + Sbjct: 372 LKSESEKVRASAMRKLSMAA 391 >gi|261401249|ref|ZP_05987374.1| radical SAM enzyme, Cfr family [Neisseria lactamica ATCC 23970] gi|269208732|gb|EEZ75187.1| radical SAM enzyme, Cfr family [Neisseria lactamica ATCC 23970] Length = 364 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 162/377 (42%), Positives = 231/377 (61%), Gaps = 20/377 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + L +G R Q+ +WI+ G ++F M+D+++ +RH LN Sbjct: 2 KTNLLNYDLQGLIRHFADMG----EKPFRAKQVMRWIHQSGAQNFDEMTDLAKSLRHKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + +I P+++ + S DGTRKWLL +G +ETV+IPE RGTLC+SSQVGC+ Sbjct: 58 EQANIGIPKLMMSQESSDGTRKWLL-----DVGTGNGVETVFIPESDRGTLCISSQVGCA 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC TG Q RNLTA EI+ Q+ A +G V P R ISN+VMM Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEP+ NFDNV SLSI D G S+RR+T+STSG VP + R+ + + V LA+SLHA Sbjct: 162 GMGEPMANFDNVVTSLSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHA 221 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++R+ +VP+N+KYPL+ L+ ACR Y + ITFEYVML GIND + A LI + Sbjct: 222 SNDEVRDQIVPLNKKYPLKELMAACRRYLVKAPRDFITFEYVMLDGINDKAQHAHELINL 281 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +K +P K NLIPFNP+P Y S +++I F + ++++G+ +R RG DI AACGQL Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYERSSKENIRVFKDILQQAGFVVTVRKTRGDDIDAACGQL 341 Query: 366 KSLSKRIPKVPRQEMQI 382 + + ++ QI Sbjct: 342 AGQVQDKTRRQQKWQQI 358 >gi|197249479|ref|YP_002147478.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|254807201|sp|B5F1A0|RLMN_SALA4 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|197213182|gb|ACH50579.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 388 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 160/383 (41%), Positives = 216/383 (56%), Gaps = 23/383 (6%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 N K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R Sbjct: 17 NKEAKINLLDLNRQQMREFFKNLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLR 72 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L + I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQ Sbjct: 73 GKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQ 126 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC+L C FC T Q RNL EI+ QV A ++G + R I+N Sbjct: 127 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITN 176 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 +VMMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAI Sbjct: 177 VVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAI 236 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299 SLHA ++ +R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A Sbjct: 237 SLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHA 296 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI Sbjct: 297 HQLAELLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDID 356 Query: 360 AACGQLKSLS-KRIPKVPRQEMQ 381 AACGQL R + R+ MQ Sbjct: 357 AACGQLAGDVIDRTKRTLRKRMQ 379 >gi|254236710|ref|ZP_04930033.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126168641|gb|EAZ54152.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] Length = 379 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 170/374 (45%), Positives = 226/374 (60%), Gaps = 21/374 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ + +LE+ IG R R Q+ KWI+ G+ DF M+++ + +R L Sbjct: 8 KVNLLGLTQPQLEQFFESIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVGKALREKLK 63 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I PEIV + IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 64 ASAEIRGPEIVSQDISADGTRKWVVR-----VASGSCVETVYIPQGGRGTLCVSSQAGCA 118 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q +LTA E++ QV +A G P D R I+N+VMM Sbjct: 119 LDCSFCSTGKQGFNSDLTAAEVIGQVWIANKSFGTVPAKID----------RAITNVVMM 168 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GM EPL NFDNV +++I D +G SKR++TLSTSG VP I ++GE I V LA+SLHA Sbjct: 169 GMSEPLLNFDNVVAAMNIMMDDLGYGISKRKVTLSTSGVVPMIDKLGEVIDVSLALSLHA 228 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304 +++LRN LVPIN+KYPL ML+DACR Y +R+ T EY +LK +ND P A +I Sbjct: 229 PNDELRNKLVPINKKYPLGMLLDACRRYISRLGEKRVLTVEYTLLKDVNDQPEHAEQMIA 288 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK P KINLIPFNP+P Y I F + + + G++ +RT RG DI AACGQ Sbjct: 289 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDMLHKGGFNVTVRTTRGDDIDAACGQ 348 Query: 365 L-KSLSKRIPKVPR 377 L + R + R Sbjct: 349 LVGQVMDRTRRSER 362 >gi|66044493|ref|YP_234334.1| hypothetical protein Psyr_1245 [Pseudomonas syringae pv. syringae B728a] gi|75503082|sp|Q4ZX26|RLMN_PSEU2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|63255200|gb|AAY36296.1| Conserved hypothetical protein 48 [Pseudomonas syringae pv. syringae B728a] Length = 382 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 170/374 (45%), Positives = 228/374 (60%), Gaps = 21/374 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ ++E+E+ IG R R Q+ KWI+ G+ DF M+++S+ +R L Sbjct: 7 KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 63 ACAEVRGPEVVSEDISSDGTRKWVVRVES-----GSCVETVYIPQGKRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV +A G P D R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304 ++ LRN LVPIN+KYPL+ML+++CR Y +R+ T EY MLK IND A+ +I+ Sbjct: 228 PNDALRNQLVPINKKYPLKMLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK P KINLIPFNP+P Y I F + + ++GY+ +RT RG DI AACGQ Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347 Query: 365 L-KSLSKRIPKVPR 377 L + R + R Sbjct: 348 LVGQVMDRTRRSER 361 >gi|71738083|ref|YP_273575.1| radical SAM protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|257487201|ref|ZP_05641242.1| radical SAM protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|298486020|ref|ZP_07004094.1| 23S rRNA m(2)A2503 methyltransferase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|123761313|sp|Q48LZ7|RLMN_PSE14 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|71558636|gb|AAZ37847.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv. phaseolicola 1448A] gi|298159497|gb|EFI00544.1| 23S rRNA m(2)A2503 methyltransferase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320322924|gb|EFW79014.1| radical SAM protein [Pseudomonas syringae pv. glycinea str. B076] gi|320329953|gb|EFW85941.1| radical SAM protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330874705|gb|EGH08854.1| radical SAM protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330985011|gb|EGH83114.1| radical SAM protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009183|gb|EGH89239.1| radical SAM protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 382 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 171/374 (45%), Positives = 228/374 (60%), Gaps = 21/374 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ ++E+E+ IG R R Q+ KWI+ G+ DF M+++S+ +R L Sbjct: 7 KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 63 ACAEVRGPEVVSEDISSDGTRKWVVRVES-----GSCVETVYIPQGKRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV +A G P D R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304 ++ LRN LVPIN+KYPL+ML+D+CR Y +R+ T EY MLK IND A+ +I+ Sbjct: 228 PNDALRNQLVPINKKYPLQMLLDSCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK P KINLIPFNP+P Y I F + + ++GY+ +RT RG DI AACGQ Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347 Query: 365 L-KSLSKRIPKVPR 377 L + R + R Sbjct: 348 LVGQVMDRTRRSER 361 >gi|28868638|ref|NP_791257.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv. tomato str. DC3000] gi|81732046|sp|Q886Z3|RLMN_PSESM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|28851876|gb|AAO54952.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv. tomato str. DC3000] gi|331019383|gb|EGH99439.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 382 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 168/374 (44%), Positives = 228/374 (60%), Gaps = 21/374 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ ++E+E+ IG R R Q+ KWI+ G+ DF M+++S+ +R L Sbjct: 7 KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 63 ACAEVRGPEVVSEDISSDGTRKWVVRVES-----GSCVETVYIPQGKRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV +A G P D R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304 ++ LRN LVP+N+KYPL++L+++CR Y +R+ T EY MLK IND A+ +I+ Sbjct: 228 PNDALRNQLVPLNKKYPLKVLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK P KINLIPFNP+P Y I F + + ++GY+ +RT RG DI AACGQ Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347 Query: 365 L-KSLSKRIPKVPR 377 L + R + R Sbjct: 348 LVGQVMDRTRRSER 361 >gi|309379239|emb|CBX22196.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 364 Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 159/377 (42%), Positives = 230/377 (61%), Gaps = 20/377 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + L +G R Q+ +WI+ G ++F M+D+++ +RH LN Sbjct: 2 KTNLLNYDLQGLIRHFADMG----EKPFRAKQVMRWIHQSGAQNFDEMTDLAKSLRHKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + +I P+++ + S DGTRKWLL +G +ETV+IPE RGTLC+SSQVGC+ Sbjct: 58 EQANIGIPKLMMSQESSDGTRKWLL-----DVGTGNGVETVFIPESERGTLCISSQVGCA 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC TG Q RNLTA EI+ Q+ A +G V P R ISN+VMM Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEP+ NFDNV +LSI D G S+RR+T+STSG V + R+ + + V LA+SLHA Sbjct: 162 GMGEPMANFDNVVTALSIMLDDYGYGLSRRRVTVSTSGMVSQMDRLRDVMPVALAVSLHA 221 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++R+ +VP+N+KYPL+ L+ ACR Y + ITFEYVML G+ND + A LI + Sbjct: 222 SNDEVRDQIVPLNKKYPLKELMAACRRYLVKAPRDFITFEYVMLDGVNDKAQHAHELINL 281 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +K +P K NLIPFNP+P Y S +++I F + ++++G+ +R RG DI AACGQL Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYERSSKENIRVFKDILQQAGFVVTVRKTRGDDIDAACGQL 341 Query: 366 KSLSKRIPKVPRQEMQI 382 + + ++ QI Sbjct: 342 AGQVQDKTRRQQKWQQI 358 >gi|237800040|ref|ZP_04588501.1| radical SAM protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022895|gb|EGI02952.1| radical SAM protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 382 Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 170/374 (45%), Positives = 228/374 (60%), Gaps = 21/374 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ ++E+E+ IG R R Q+ KWI+ G+ DF M+++S+ +R L Sbjct: 7 KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 63 ACAEVRGPEVVSEDISSDGTRKWVVRVES-----GSCVETVYIPQGKRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV +A G P D R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304 ++ LRN LVPIN+KYPL+ML+++CR Y +R+ T EY MLK IND A+ +I+ Sbjct: 228 PNDALRNQLVPINKKYPLQMLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK P KINLIPFNP+P Y I F + + ++GY+ +RT RG DI AACGQ Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347 Query: 365 L-KSLSKRIPKVPR 377 L + R + R Sbjct: 348 LVGQVMDRTRRSER 361 >gi|330957524|gb|EGH57784.1| radical SAM protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 382 Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 170/374 (45%), Positives = 227/374 (60%), Gaps = 21/374 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ + E+E+ IG R R Q+ KWI+ G+ DF M+++S+ +R L Sbjct: 7 KTNLLGLTQPEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDVMTNVSKALREKLK 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 63 ACAEVRGPEVVSEDISSDGTRKWVVRVES-----GSCVETVYIPQGKRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV +A G P D R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304 ++ LRN LVPIN+KYPL+ML+++CR Y +R+ T EY MLK IND A+ +I+ Sbjct: 228 PNDALRNQLVPINKKYPLQMLLESCRRYMSSLGEKRVLTIEYTMLKDINDQVEHAVEMIE 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK P KINLIPFNP+P Y I F + + ++GY+ +RT RG DI AACGQ Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347 Query: 365 L-KSLSKRIPKVPR 377 L + R + R Sbjct: 348 LVGQVMDRTRRSER 361 >gi|289677951|ref|ZP_06498841.1| hypothetical protein PsyrpsF_31988 [Pseudomonas syringae pv. syringae FF5] gi|302185748|ref|ZP_07262421.1| hypothetical protein Psyrps6_05363 [Pseudomonas syringae pv. syringae 642] gi|330895885|gb|EGH28170.1| hypothetical protein PSYJA_03834 [Pseudomonas syringae pv. japonica str. M301072PT] Length = 382 Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 168/374 (44%), Positives = 228/374 (60%), Gaps = 21/374 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ ++E+E+ IG R R Q+ KWI+ G+ DF M+++S+ +R L Sbjct: 7 KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 63 ACAEVRGPEVVSEDISSDGTRKWVVRVES-----GSCVETVYIPQGKRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV +A G P D R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304 ++ LRN LVP+N+KYPL++L+++CR Y +R+ T EY MLK IND A+ +I+ Sbjct: 228 PNDALRNQLVPLNKKYPLKVLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK P KINLIPFNP+P Y I F + + ++GY+ +RT RG DI AACGQ Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347 Query: 365 L-KSLSKRIPKVPR 377 L + R + R Sbjct: 348 LVGQVMDRTRRSER 361 >gi|300717954|ref|YP_003742757.1| Fe-S containing enzyme [Erwinia billingiae Eb661] gi|299063790|emb|CAX60910.1| putative Fe-S containing enzyme [Erwinia billingiae Eb661] Length = 389 Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 158/383 (41%), Positives = 218/383 (56%), Gaps = 23/383 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+++ E +G R Q+ KW+Y DF M+DI++ R+ L Sbjct: 21 EKINLLDLNRQQMREFFASMG----EKPFRADQVMKWMYHYCCDDFDEMTDINKVFRNRL 76 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PE+ E+ S DGT KW + G ++ETVYIPEK R TLCVSSQVGC Sbjct: 77 KEVAEIRAPEVATEQRSTDGTIKWAI------TVGGQQVETVYIPEKDRATLCVSSQVGC 130 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNL EI+ QV A ++G + R I+N+VM Sbjct: 131 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------ASKITGTRPITNVVM 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 181 MGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 240 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++ +R+ +VP+N+KY +E + + Y SNA R+T EYVML +NDS +A L Sbjct: 241 APNDTIRDEIVPVNKKYNIETFLASVSRYIAKSNANQGRVTIEYVMLDHVNDSTDNAHEL 300 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AAC Sbjct: 301 AALLKNTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTTIVRKTRGDDIDAAC 360 Query: 363 GQLKSLS-KRIPKVPRQEMQITG 384 GQL R + R++M Sbjct: 361 GQLAGEVIDRTKRTLRKKMAGEA 383 >gi|110834724|ref|YP_693583.1| Fe-S-cluster redox protein [Alcanivorax borkumensis SK2] gi|123050394|sp|Q0VND7|RLMN_ALCBS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|110647835|emb|CAL17311.1| conserved Fe-S-cluster redox protein, putative [Alcanivorax borkumensis SK2] Length = 381 Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 159/380 (41%), Positives = 224/380 (58%), Gaps = 22/380 (5%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +K +L+G+ R ++EE L +G + R Q+ KWI+ F+ M+D+ + + Sbjct: 1 MTAQQKVNLLGLSRPQMEEFFLTMG----EKKFRAQQVLKWIHHHQADSFEQMTDVGKAL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L++ I P++ E IS DGTRKW+ +ETV+IP+ RGTLCVSS Sbjct: 57 RQKLSEVAEIRGPKVTHESISRDGTRKWVFEM-----DNGGAVETVFIPDGRRGTLCVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC++ CSFC TG Q R++T+ EI+ QV A G I+ Sbjct: 112 QVGCAVDCSFCSTGKQGFQRDMTSAEIIGQVWQASRAFGPRRNL----------GQHPIT 161 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+D V ++ I D +G K+RIT+STSG +P + ++ E++ V LA Sbjct: 162 NVVMMGMGEPLLNYDKVLTAMRIMKDDLGYGIGKKRITVSTSGVIPKMNQLSEDLDVSLA 221 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG--LSNARRITFEYVMLKGINDSPRD 298 +SLHA +++LRN LVP+NRKYPL+ L+ AC+ Y IT EYVML+ +ND P Sbjct: 222 VSLHAPNDELRNQLVPLNRKYPLKDLMAACKRYSKNITHRHNTITMEYVMLRDVNDKPEH 281 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L+K+L GIP K+NLIPFNP+P Y S + DI+ F + + +G + +RT RG DI Sbjct: 282 ARQLVKLLNGIPVKVNLIPFNPFPHAGYERSRKNDILEFHKYLNDNGVMTTVRTTRGDDI 341 Query: 359 LAACGQLKSLSK-RIPKVPR 377 AACGQL K R + R Sbjct: 342 DAACGQLVGQVKDRTRRSER 361 >gi|170723489|ref|YP_001751177.1| radical SAM protein [Pseudomonas putida W619] gi|205829826|sp|B1JDQ5|RLMN_PSEPW RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|169761492|gb|ACA74808.1| radical SAM enzyme, Cfr family [Pseudomonas putida W619] Length = 381 Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 168/374 (44%), Positives = 224/374 (59%), Gaps = 21/374 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ + E+E+ IG R R Q+ KWI+ G+ DF M+++ + +R L Sbjct: 7 KINLLGLTQPEMEQFFDSIG----EKRFRAGQVMKWIHHFGVDDFAAMTNVGKALREKLE 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I PE+V E IS DGTRKW++R + +ETVYIP RGTLCVSSQ GC+ Sbjct: 63 AVAEIRPPEVVSEDISADGTRKWVIR-----VASGSCVETVYIPTDDRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV LA G P D R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWLANKSFGTVPAKID----------RAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ I D +G SKRR+TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVIAAMKIMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304 +++LRN LVPIN+KYPL+ML+++C Y +R+ T EY +LK +ND P A +I+ Sbjct: 228 PNDELRNQLVPINKKYPLKMLLESCMGYMATLGGKRVLTVEYTLLKDVNDQPEHAAQMIE 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L+ +P KINLIPFNP+P Y I F + + G++ RT RG DI AACGQ Sbjct: 288 LLRDVPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQ 347 Query: 365 L-KSLSKRIPKVPR 377 L ++ R + R Sbjct: 348 LVGQVNDRTRRSER 361 >gi|330872882|gb|EGH07031.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330965912|gb|EGH66172.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 382 Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 170/374 (45%), Positives = 228/374 (60%), Gaps = 21/374 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ ++E+E+ IG R R Q+ KWI+ G+ DF M+++S+ +R L Sbjct: 7 KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 63 ACAEVRGPEVVSEDISTDGTRKWVVRVES-----GSCVETVYIPQGKRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV +A G P D R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304 ++ LRN LVPIN+KYPL+ML+++CR Y +R+ T EY MLK IND A+ +I+ Sbjct: 228 PNDALRNQLVPINKKYPLQMLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK P KINLIPFNP+P Y I F + + ++GY+ +RT RG DI AACGQ Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347 Query: 365 L-KSLSKRIPKVPR 377 L + R + R Sbjct: 348 LVGQVMDRTRRSER 361 >gi|152979682|ref|YP_001345311.1| hypothetical protein Asuc_2030 [Actinobacillus succinogenes 130Z] gi|205829707|sp|A6VQX9|RLMN_ACTSZ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|150841405|gb|ABR75376.1| radical SAM enzyme, Cfr family [Actinobacillus succinogenes 130Z] Length = 371 Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 155/380 (40%), Positives = 219/380 (57%), Gaps = 22/380 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L Sbjct: 3 EKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 58 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q I PE+ E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC Sbjct: 59 KQVAEIKAPEVAVEQRSSDGTIKWAMQVGD------QQVETVYIPEADRATLCVSSQVGC 112 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F + R I+N+VM Sbjct: 113 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGIRPITNVVM 162 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+T+STSG VP + ++ E I V LAISLH Sbjct: 163 MGMGEPLLNMANVVPAMEIMLDDFAYGLSKRRVTISTSGVVPALDKLPEMIDVALAISLH 222 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ +VPIN+KY ++ML+D+ Y +SNA ++T EYV+L +ND A L Sbjct: 223 APNDELRDEIVPINKKYNIKMLMDSVNRYLSVSNANHGKVTIEYVLLDHVNDGTEHAHQL 282 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK P KINLIP+NP+P Y S + F + + G++ +R RG DI AAC Sbjct: 283 ADVLKNTPCKINLIPWNPFPEAPYAKSSNSRVDRFQKTLMEYGFTVTVRKTRGDDIDAAC 342 Query: 363 GQLKSLSKRIPKVPRQEMQI 382 GQL K Q+ Q Sbjct: 343 GQLAGDVIDRTKRTAQKKQF 362 >gi|311694381|gb|ADP97254.1| conserved hypothetical protein [marine bacterium HP15] Length = 370 Score = 464 bits (1195), Expect = e-129, Method: Composition-based stats. Identities = 160/380 (42%), Positives = 228/380 (60%), Gaps = 20/380 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+GM + +LE +G R R +Q+ +WI+ RG DF M+++S+ +R L Sbjct: 6 EKTNLLGMPKAKLEAFFESLG----EKRFRATQVLQWIHQRGADDFDQMTNMSKALREKL 61 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q I PE+V ++ S DGTRKW++R +ETV IP+ RGTLCVSSQ+GC Sbjct: 62 KQVAEIRGPEVVYDETSKDGTRKWVMRM-----DNGNSVETVLIPDGERGTLCVSSQIGC 116 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 SL C+FC TG + RNLTA E++ QV +AR F P R I+N+VM Sbjct: 117 SLDCTFCSTGKRGFNRNLTAAEVIGQVWVARKAFMPF----------EPGPDRPITNVVM 166 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV ++++ + + SKRR+TLSTSG VP + R+ E V LAISLH Sbjct: 167 MGMGEPLLNFDNVVDAMNLMMEDLAYGISKRRVTLSTSGVVPALDRLSEVTDVSLAISLH 226 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHY-PGLSNARRITFEYVMLKGINDSPRDALNLI 303 A +++LRN LVP+N+KYP+ L+ A + Y L + R+ T EY +++G+ND P A L Sbjct: 227 APNDELRNKLVPLNKKYPISELLAATKRYFARLPDKRKATIEYTVIEGMNDQPEHARELA 286 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +L+ +P KINLIPFNP+P ++ F + +GY + IRT RG DI AACG Sbjct: 287 VLLRDLPCKINLIPFNPFPESDFRRPSMNATRRFQNVLNEAGYITTIRTTRGDDIDAACG 346 Query: 364 QLKSLSKRIPKVPRQEMQIT 383 QL + + ++ +Q+ Sbjct: 347 QLVGRVEDRTRRSQRYIQVQ 366 >gi|213971521|ref|ZP_03399632.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv. tomato T1] gi|301386126|ref|ZP_07234544.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv. tomato Max13] gi|302060174|ref|ZP_07251715.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv. tomato K40] gi|302135117|ref|ZP_07261107.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213923713|gb|EEB57297.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv. tomato T1] Length = 382 Score = 464 bits (1195), Expect = e-129, Method: Composition-based stats. Identities = 170/374 (45%), Positives = 227/374 (60%), Gaps = 21/374 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ ++E+E+ IG R R Q+ KWI+ G+ DF M+++S+ +R L Sbjct: 7 KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 63 ACAEVRGPEVVSEDISTDGTRKWVVRVES-----GSCVETVYIPQGKRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV +A G P D R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVIAAMRLMMDDLGYGISKRRVTLSTSGVVPMIDELSRHIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304 ++ LRN LVPIN+KYPL+ML+++CR Y +R+ T EY MLK IND A+ +I+ Sbjct: 228 PNDALRNQLVPINKKYPLQMLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK P KINLIPFNP+P Y I F + + ++GY+ +RT RG DI AACGQ Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347 Query: 365 L-KSLSKRIPKVPR 377 L + R + R Sbjct: 348 LVGQVMDRTRRSER 361 >gi|183599740|ref|ZP_02961233.1| hypothetical protein PROSTU_03244 [Providencia stuartii ATCC 25827] gi|188022000|gb|EDU60040.1| hypothetical protein PROSTU_03244 [Providencia stuartii ATCC 25827] Length = 393 Score = 464 bits (1195), Expect = e-129, Method: Composition-based stats. Identities = 161/382 (42%), Positives = 220/382 (57%), Gaps = 23/382 (6%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 N +K +L+ + R+++ E ++G R Q+ KWIY DF M+DI++ +R Sbjct: 22 NNTQKINLLDLNRKQMREFFAQMG----EKPFRADQVMKWIYHYCYDDFDQMTDINKALR 77 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L + I PE+ +E+ S DGT KW + ++ETVYIPE R TLCVSSQ Sbjct: 78 AKLKEVAEIRAPEVAEEQRSADGTIKWAITVGD------QQVETVYIPEDDRATLCVSSQ 131 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC+L C FC T Q RNL EI+ QV A ++G + S R I+N Sbjct: 132 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------SLKSSGRRPITN 181 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 +VMMGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAI Sbjct: 182 VVMMGMGEPLLNLNNVVPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAI 241 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDA 299 SLHA ++D+R+ +VPIN+KY +E + + R Y SN R+T EYVML INDS A Sbjct: 242 SLHAPTDDIRDDIVPINKKYNIETFLSSVRRYLSKSNANGGRVTVEYVMLDHINDSIEQA 301 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L + LK P+KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI Sbjct: 302 HQLAECLKDTPSKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDID 361 Query: 360 AACGQLKSLS-KRIPKVPRQEM 380 AACGQL R + ++ M Sbjct: 362 AACGQLAGEVIDRTKRTLKKRM 383 >gi|254427443|ref|ZP_05041150.1| radical SAM enzyme, Cfr family [Alcanivorax sp. DG881] gi|196193612|gb|EDX88571.1| radical SAM enzyme, Cfr family [Alcanivorax sp. DG881] Length = 380 Score = 464 bits (1195), Expect = e-129, Method: Composition-based stats. Identities = 159/380 (41%), Positives = 224/380 (58%), Gaps = 22/380 (5%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +K +L+G+ R ++EE L +G + R Q+ KWI+ F+ M+D+ + + Sbjct: 1 MTAQQKVNLLGLSRPQMEEFFLTMG----EKKFRAQQVLKWIHHHQADSFEQMTDVGKAL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L++ I P++ E IS DGTRKW+ +ETV+IP+ RGTLCVSS Sbjct: 57 RQKLSEVAEIRGPKVTHESISRDGTRKWVFEM-----DNGGAVETVFIPDGRRGTLCVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC++ CSFC TG Q R++T+ EI+ QV A G I+ Sbjct: 112 QVGCAVDCSFCSTGKQGFQRDMTSAEIIGQVWQASRAFGPRRNL----------GQHPIT 161 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+D V ++ I D +G K+RIT+STSG +P + ++ E++ V LA Sbjct: 162 NVVMMGMGEPLLNYDKVLTAMRIMKDDLGYGIGKKRITVSTSGVIPKMNQLSEDLDVSLA 221 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG--LSNARRITFEYVMLKGINDSPRD 298 +SLHA +++LRN LVP+NRKYPL+ L+ AC+ Y IT EYVML+ +ND P Sbjct: 222 VSLHAPNDELRNQLVPLNRKYPLKDLMAACKSYSKNITHRHNTITMEYVMLRDVNDKPEH 281 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L+K+L GIP K+NLIPFNP+P Y S + DI+ F + + +G + +RT RG DI Sbjct: 282 ARQLVKLLNGIPVKVNLIPFNPFPHAGYERSRKNDILEFHKYLNDNGVMTTVRTTRGDDI 341 Query: 359 LAACGQLKSLSK-RIPKVPR 377 AACGQL K R + R Sbjct: 342 DAACGQLVGQVKDRTRRSER 361 >gi|161170314|gb|ABX59284.1| predicted FeS cluster redox protein [uncultured marine bacterium EB000_55B11] gi|297183841|gb|ADI19964.1| hypothetical protein [uncultured marine bacterium EB000_55B11] Length = 390 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 205/376 (54%), Positives = 277/376 (73%), Gaps = 13/376 (3%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++IG+ R+ L AL +IG P + ++MRT+QIW+W+YV+G ++F+ M+++S++ R+LL Q Sbjct: 24 PNIIGLQRKALANALNEIGTPAKQIKMRTAQIWQWLYVKGAQNFEEMTNLSKDFRNLLVQ 83 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 +F+I PEIV +IS DGTRK+LLR + G E+E VYIPEK RGTLC+SSQ+GC+L Sbjct: 84 NFAITRPEIVTRQISKDGTRKYLLR-----VTGGHEVEAVYIPEKDRGTLCISSQIGCTL 138 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 TC+FC+TGTQKLVRNLT EI+ Q+L+AR L ++ R +SNIV+MG Sbjct: 139 TCTFCHTGTQKLVRNLTPAEIVGQILIARDDLDEWGKDA--------GQKRNVSNIVLMG 190 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N DNV+ ++ IA D+ G++ S+RRITLSTSG VP I R G EIG MLAIS HA Sbjct: 191 MGEPLYNTDNVRDAMLIAMDNEGIALSRRRITLSTSGVVPEIIRTGSEIGCMLAISFHAT 250 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++++R++LVPINRK+ + L++ACR+YP LSN+ RITFEYVMLK INDS DA L+ ++ Sbjct: 251 TDEVRDVLVPINRKHKIAELLEACRNYPKLSNSERITFEYVMLKNINDSDEDARRLVDLI 310 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 GIPAKINLIPFNPWPG Y SD I F + + ++GY+SPIR PRG DI+AA GQLK Sbjct: 311 SGIPAKINLIPFNPWPGSGYERSDWNRIEAFGDIVNKAGYASPIRRPRGEDIMAAXGQLK 370 Query: 367 SLSKRIPKVPRQEMQI 382 S ++R+ K +Q + Sbjct: 371 SETQRVRKSAKQMAEE 386 >gi|205829717|sp|A4VNX4|RLMN_PSEU5 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase Length = 382 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 169/374 (45%), Positives = 221/374 (59%), Gaps = 21/374 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ + +LE IG R R Q+ KWI+ G+ DF MS++ + +R L Sbjct: 7 KVNLLGLTQPQLESFFESIG----EKRFRAGQVMKWIHHFGVDDFDAMSNLGKALREKLK 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I PEIV E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 63 ACAEIRGPEIVSEDISSDGTRKWVVR-----VASGSCVETVYIPQGGRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV +A G P D R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGTVPAKID----------RAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ I D +G SKR++TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVVAAMQIMMDDLGYGISKRKVTLSTSGVVPMIDELAKVIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304 + LR+ LVPIN+KYPL++L+ AC+ Y +R+ T EY +LKG+ND P A +I Sbjct: 228 PNEALRDQLVPINKKYPLDVLLAACKRYVSRLGEKRVLTIEYTLLKGVNDQPEHAEQMIA 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L IP KINLIPFNP+P Y I F + + + G++ +RT RG DI AACGQ Sbjct: 288 LLADIPCKINLIPFNPFPHSGYERPSNNAIRRFQDILHKGGHNVTVRTTRGEDIDAACGQ 347 Query: 365 LKSLS-KRIPKVPR 377 L R + R Sbjct: 348 LVGQVLDRTRRSER 361 >gi|77460825|ref|YP_350332.1| hypothetical protein Pfl01_4604 [Pseudomonas fluorescens Pf0-1] gi|123772061|sp|Q3K7B3|RLMN_PSEPF RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|77384828|gb|ABA76341.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudomonas fluorescens Pf0-1] Length = 382 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 167/374 (44%), Positives = 227/374 (60%), Gaps = 21/374 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ + E+E+ IG R R Q+ KWI+ G+ DF M+++S+ +R L Sbjct: 7 KNNLLGLTQPEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 63 AVAEVRGPEVVSEDISSDGTRKWVVR-----VASGSCVETVYIPQGKRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV +A G P D R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATID----------RAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVVAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304 ++ LRN LVPIN+KYPL+ML+++C+ Y +R+ T EY +LK +ND A+ +I+ Sbjct: 228 PNDALRNQLVPINKKYPLKMLLESCQRYMSALGEKRVLTIEYTLLKDVNDKLEHAVEMIE 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK IP KINLIPFNP+P Y I F + + ++G++ +RT RG DI AACGQ Sbjct: 288 LLKDIPCKINLIPFNPFPHSGYERPSNNAIRRFQDQLHQAGFNVTVRTTRGEDIDAACGQ 347 Query: 365 LKSLS-KRIPKVPR 377 L R + R Sbjct: 348 LVGQVLDRTRRSER 361 >gi|238912645|ref|ZP_04656482.1| hypothetical protein SentesTe_16142 [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 388 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 160/384 (41%), Positives = 216/384 (56%), Gaps = 23/384 (5%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 +N K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ + Sbjct: 16 LNNETKINLLDLNRQQMREFFKNLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVL 71 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L + I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSS Sbjct: 72 RGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSS 125 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC+L C FC T Q RNL EI+ QV A ++G + R I+ Sbjct: 126 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPIT 175 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G I V LA Sbjct: 176 NVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGYMIDVALA 235 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRD 298 ISLHA ++ +R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND Sbjct: 236 ISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEH 295 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI Sbjct: 296 AHQLAELLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDI 355 Query: 359 LAACGQLKSLS-KRIPKVPRQEMQ 381 AACGQL R + R+ MQ Sbjct: 356 DAACGQLAGDVIDRTKRTLRKRMQ 379 >gi|332639899|pdb|3RFA|A Chain A, X-Ray Structure Of Rlmn From Escherichia Coli In Complex With S- Adenosylmethionine gi|332639900|pdb|3RFA|B Chain B, X-Ray Structure Of Rlmn From Escherichia Coli In Complex With S- Adenosylmethionine Length = 404 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 158/382 (41%), Positives = 216/382 (56%), Gaps = 23/382 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+ Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + R I+N+VMM Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AA G Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAAXG 356 Query: 364 QLKSLS-KRIPKVPRQEMQITG 384 QL R + R+ MQ Sbjct: 357 QLAGDVIDRTKRTLRKRMQGEA 378 >gi|259907715|ref|YP_002648071.1| ribosomal RNA large subunit methyltransferase N [Erwinia pyrifoliae Ep1/96] gi|224963337|emb|CAX54822.1| conserved uncharacterized protein YfgB [Erwinia pyrifoliae Ep1/96] gi|283477569|emb|CAY73485.1| UPF0063 protein yfgB [Erwinia pyrifoliae DSM 12163] gi|310764777|gb|ADP09727.1| ribosomal RNA large subunit methyltransferase N [Erwinia sp. Ejp617] Length = 389 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 162/383 (42%), Positives = 220/383 (57%), Gaps = 23/383 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+++ E +G R Q+ KWIY DF M+DI++ R+ L Sbjct: 21 EKINLLDLNRQQMREFFASLG----EKPFRADQVMKWIYHYCCDDFDEMTDINKVFRNRL 76 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PE+ +E+ S DGT KW ++ G ++ETVYIPEK R TLCVSSQVGC Sbjct: 77 KELAEIRAPEVAEEQRSADGTIKWAIQV------GGQQVETVYIPEKDRATLCVSSQVGC 130 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNL EI+ QV A ++G + R I+N+VM Sbjct: 131 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AAKVTGQRPITNVVM 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 181 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 240 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++ +RN +VPIN+KY +E + + Y G SNA R+T EYVML INDS +A L Sbjct: 241 APNDSIRNEIVPINKKYNIETFLASVSRYIGKSNANQGRVTIEYVMLDHINDSTDNAHEL 300 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AAC Sbjct: 301 AALLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAAC 360 Query: 363 GQLKSLS-KRIPKVPRQEMQITG 384 GQL R + +++M Sbjct: 361 GQLAGDVIDRTKRTLKKKMAGEA 383 >gi|225024692|ref|ZP_03713884.1| hypothetical protein EIKCOROL_01574 [Eikenella corrodens ATCC 23834] gi|224942581|gb|EEG23790.1| hypothetical protein EIKCOROL_01574 [Eikenella corrodens ATCC 23834] Length = 363 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 155/378 (41%), Positives = 225/378 (59%), Gaps = 20/378 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ L ++G R Q+ +W++ DF M+D+++ +R LN Sbjct: 2 KTNLLNYDLAGLTAHFAQMG----EKPFRARQVMRWMHQGAAGDFDEMTDLAKSLRAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + P ++ + S DGTRKWLL +G +ETV+IPE RGTLC+SSQVGC+ Sbjct: 58 ESAQVGVPALMAAQESRDGTRKWLL-----DVGTGNGVETVFIPETDRGTLCISSQVGCA 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC TG Q RNL+ EI+ Q+ A LG P E R ISN+VMM Sbjct: 113 LECTFCSTGRQGFNRNLSTAEIIGQLWWANKALGATPKDE-----------RVISNVVMM 161 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N+DNV +LSI D G + S+RR+T+STSG VP + R+ E++ V LA+SLHA Sbjct: 162 GMGEPLANYDNVVTALSIMLDDHGYALSRRRVTVSTSGMVPQMDRLKEDMPVALAVSLHA 221 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ +RN +VP+N+KYPL+ L+ AC+ Y + +TFEYVML G+ND P A L+++ Sbjct: 222 PNDAIRNEIVPLNKKYPLKELMAACQRYLVKAPRDFVTFEYVMLDGVNDKPEHARELLEL 281 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +K +P K NLIPFNP+P Y S ++I F + + ++G +R RG DI AACGQL Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYNRSSDENIRVFRDILYQAGLVVTVRKTRGDDIDAACGQL 341 Query: 366 KSLSKRIPKVPRQEMQIT 383 + + ++ +Q+ Sbjct: 342 AGQVQDKTRRQQKWLQLQ 359 >gi|119476380|ref|ZP_01616731.1| predicted Fe-S-cluster redox enzyme [marine gamma proteobacterium HTCC2143] gi|119450244|gb|EAW31479.1| predicted Fe-S-cluster redox enzyme [marine gamma proteobacterium HTCC2143] Length = 386 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 170/382 (44%), Positives = 231/382 (60%), Gaps = 22/382 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+G+ RE++E + +G R Q+ KWI+ +G+ +F M++IS+ +R L Sbjct: 16 EKTNLLGLSREKMEAFCVSLG----EKPFRAQQLLKWIHHQGVDNFDAMTNISKALRSRL 71 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q I PEIV + S DGTRKW +R I G +ETV IP+ RGTLCVSSQVGC Sbjct: 72 IQCAEIRPPEIVSQNDSVDGTRKWAIR-----IAGGGLVETVLIPDGDRGTLCVSSQVGC 126 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 SL CSFC TG Q R+L+A EI+ QV LA + FP R I+N+VM Sbjct: 127 SLDCSFCSTGKQGFQRDLSAAEIIGQVWLAINSYDAFPSTNK----------RIITNVVM 176 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV +S+S+ D G SKRR+TLSTSG VP + ++G+ V LAISLH Sbjct: 177 MGMGEPLLNFDNVVQSMSLMMDDFGYGISKRRVTLSTSGVVPALDKLGDVSEVSLAISLH 236 Query: 245 AVSNDLRNILVPINRKYPLEMLIDAC-RHYPGLSNARRI-TFEYVMLKGINDSPRDALNL 302 A +++LR+ LVPIN+KYP+ L+ AC R++ ++ R+ T EY ++ G+NDS A L Sbjct: 237 APNDELRSQLVPINKKYPIAELLAACGRYWAKQTDTHRVTTVEYTLIAGVNDSREHAKEL 296 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K+LK P KINLIPFNP+ +Y +K I F + + S + +R RG DI AAC Sbjct: 297 AKLLKDFPCKINLIPFNPFSLSDYQRPSKKTIDQFWQVLSNSSIVTTVRNTRGDDIDAAC 356 Query: 363 GQL-KSLSKRIPKVPRQEMQIT 383 GQL ++ R + R T Sbjct: 357 GQLVGQVADRTKRSERHRTNYT 378 >gi|294789305|ref|ZP_06754543.1| radical SAM enzyme, Cfr family [Simonsiella muelleri ATCC 29453] gi|294482730|gb|EFG30419.1| radical SAM enzyme, Cfr family [Simonsiella muelleri ATCC 29453] Length = 363 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 161/377 (42%), Positives = 221/377 (58%), Gaps = 20/377 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ L E ++G R Q+ +WI+ G +F M+D+++ +R LN Sbjct: 2 KTNLLNFDLPTLTEHFAQMG----EKPFRAKQVMRWIHQSGAENFDQMTDLAKSLRAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + P ++ + S DGTRKWLL +G +ETV+IPE RGTLC+SSQVGC+ Sbjct: 58 DNAQVGIPALITSQESKDGTRKWLL-----DVGTGNGVETVFIPETERGTLCISSQVGCA 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC TG Q RNL+ EI+ Q+ A LG V P R ISN+VMM Sbjct: 113 LECTFCSTGRQGFNRNLSTAEIIGQLWWANKALG-----------VTPKNERVISNVVMM 161 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N+DNV +LSI D G S+RR+T+STSG VP + R+ E++ V LA+SLHA Sbjct: 162 GMGEPLANYDNVINALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEDMPVALAVSLHA 221 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ +R+ +VP+N+KYPL+ L+ AC Y + ITFEYVML GIND P A L+++ Sbjct: 222 SNDQVRDKIVPLNKKYPLKELMAACNRYLMKAPRDFITFEYVMLDGINDKPEHAHELVQL 281 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +K P K NLIPFNP+P Y S K+I F E + + + +R RG DI AACGQL Sbjct: 282 VKDTPCKFNLIPFNPFPNSGYERSSNKNINIFKEILMEADLVTTVRKTRGDDIDAACGQL 341 Query: 366 KSLSKRIPKVPRQEMQI 382 + K + QI Sbjct: 342 AGQVQDKTKRQEKWQQI 358 >gi|325205918|gb|ADZ01371.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M04-240196] Length = 364 Score = 463 bits (1193), Expect = e-128, Method: Composition-based stats. Identities = 160/377 (42%), Positives = 230/377 (61%), Gaps = 20/377 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + L +G R Q+ +W++ G ++F M+D+++ +RH LN Sbjct: 2 KTNLLNYDLQGLTRHFADMG----EKPFRAKQVMRWMHQSGAQNFDEMTDLAKSLRHKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I P+++ + S DGTRKWLL +G +ETV+IPE RGTLC+SSQVGC+ Sbjct: 58 EQAGIEIPKLMMSQKSSDGTRKWLL-----DVGTGNGVETVFIPESDRGTLCISSQVGCA 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC TG Q RNLTA EI+ Q+ A +G V P R ISN+VMM Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEP+ NFDNV +LSI D G S+RR+T+STSG VP + R+ + + V LA+SLHA Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHA 221 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++RN +VP+N+KYPL+ L+ AC+ Y + ITFEYVML GIND + A LI++ Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +K +P K NLIPFNP+P Y S ++I F + ++++G+ +R RG DI AACGQL Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341 Query: 366 KSLSKRIPKVPRQEMQI 382 + + ++ QI Sbjct: 342 AGQVQDKTRRQQKWQQI 358 >gi|114562291|ref|YP_749804.1| hypothetical protein Sfri_1113 [Shewanella frigidimarina NCIMB 400] gi|122300423|sp|Q085U9|RLMN_SHEFN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|114333584|gb|ABI70966.1| radical SAM enzyme, Cfr family protein [Shewanella frigidimarina NCIMB 400] Length = 373 Score = 463 bits (1193), Expect = e-128, Method: Composition-based stats. Identities = 168/387 (43%), Positives = 226/387 (58%), Gaps = 25/387 (6%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 +KK +L+ + R+ L ++G R Q+ KW+Y G+ DF+ M++I++ +R Sbjct: 2 SVKKINLLDLDRKGLRALFSEMG----EKPFRADQLMKWVYHFGVTDFEEMNNINKVLRT 57 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L I+ PEI + S DGT K+ + +G E+ETVYIPE+ R TLCVSSQV Sbjct: 58 KLAAKCEIVAPEIASFQKSNDGTIKFAI-----NVGQGQEVETVYIPEEDRATLCVSSQV 112 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L C+FC TG Q RNLT EI+ QV LG D R ISN+ Sbjct: 113 GCALECTFCSTGQQGFNRNLTVSEIIGQVWRVSQFLGFHKDTGD----------RPISNV 162 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL N NV ++ I D G S SKRR+TLSTSG VP + ++G+ I V LA+S Sbjct: 163 VMMGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDAIDVALAVS 222 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDAL 300 +HA +++LR++LVP+N+KYPL+ + R Y SN R+T EYVML INDS A Sbjct: 223 IHAPNDELRDVLVPVNKKYPLQEFLAGIRRYLEKSNANRGRVTVEYVMLDHINDSTDQAH 282 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L ++K P KINLIPFNP+PG Y S I FS+ + G + +R RG DI A Sbjct: 283 ELAILMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEHGLTVIVRKTRGDDIDA 342 Query: 361 ACGQL----KSLSKRIPKVPRQEMQIT 383 ACGQL + +KR+ K Q+ QI+ Sbjct: 343 ACGQLAGDIRDRTKRLAKKQMQQNQIS 369 >gi|167031908|ref|YP_001667139.1| radical SAM protein [Pseudomonas putida GB-1] gi|205829825|sp|B0KPI4|RLMN_PSEPG RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|166858396|gb|ABY96803.1| radical SAM enzyme, Cfr family [Pseudomonas putida GB-1] Length = 381 Score = 463 bits (1193), Expect = e-128, Method: Composition-based stats. Identities = 167/374 (44%), Positives = 224/374 (59%), Gaps = 21/374 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ + E+E+ IG R R Q+ KWI+ G+ DF M+++ + +R L Sbjct: 7 KINLLGLTQPEMEQFFDSIG----EKRFRAGQVMKWIHHFGVSDFAAMTNVGKVLREKLE 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I PE+V E IS DGTRKW++R + +ETVYIP RGTLCVSSQ GC+ Sbjct: 63 AVAEIRPPEVVSEDISADGTRKWVIR-----VASGSCVETVYIPTDDRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV LA G P D R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWLANKSFGTVPAKVD----------RAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ I D +G SKRR+TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVIAAMKIMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304 +++LRN LVPIN+KYPL++L+++C Y +R+ T EY +LK +ND P A +I+ Sbjct: 228 PNDELRNKLVPINKKYPLKVLLESCMGYMSTLGGKRVLTVEYTLLKDVNDQPEHAAQMIE 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L+ +P KINLIPFNP+P Y I F + + G++ RT RG DI AACGQ Sbjct: 288 LLRDVPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQ 347 Query: 365 L-KSLSKRIPKVPR 377 L ++ R + R Sbjct: 348 LVGQVNDRTRRSER 361 >gi|26987586|ref|NP_743011.1| radical SAM enzyme, Cfr family [Pseudomonas putida KT2440] gi|148546124|ref|YP_001266226.1| radical SAM protein [Pseudomonas putida F1] gi|81586431|sp|Q88PK0|RLMN_PSEPK RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829824|sp|A5VYT2|RLMN_PSEP1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|24982262|gb|AAN66475.1|AE016276_10 conserved hypothetical protein TIGR00048 [Pseudomonas putida KT2440] gi|148510182|gb|ABQ77042.1| radical SAM enzyme, Cfr family [Pseudomonas putida F1] gi|313497219|gb|ADR58585.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas putida BIRD-1] Length = 381 Score = 463 bits (1193), Expect = e-128, Method: Composition-based stats. Identities = 167/374 (44%), Positives = 224/374 (59%), Gaps = 21/374 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ + E+E+ IG R R Q+ KWI+ G+ DF M+++ + +R L Sbjct: 7 KINLLGLTQPEMEQFFDSIG----EKRFRAGQVMKWIHHFGVSDFAAMTNVGKVLREKLE 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I PE+V E IS DGTRKW++R + +ETVYIP RGTLCVSSQ GC+ Sbjct: 63 AVAEIRPPEVVSEDISADGTRKWVIR-----VASGSCVETVYIPTDDRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV LA G P D R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWLANKSFGTVPAKVD----------RAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ I D +G SKRR+TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVIAAMKIMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304 +++LRN LVPIN+KYPL++L+++C Y +R+ T EY +LK +ND P A +I+ Sbjct: 228 PNDELRNKLVPINKKYPLKVLLESCMGYMSTLGGKRVLTVEYTLLKDVNDQPEHAAQMIE 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L+ +P KINLIPFNP+P Y I F + + G++ RT RG DI AACGQ Sbjct: 288 LLRDVPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQ 347 Query: 365 L-KSLSKRIPKVPR 377 L ++ R + R Sbjct: 348 LVGQVNDRTRRSER 361 >gi|332288518|ref|YP_004419370.1| ribosomal RNA large subunit methyltransferase N [Gallibacterium anatis UMN179] gi|330431414|gb|AEC16473.1| ribosomal RNA large subunit methyltransferase N [Gallibacterium anatis UMN179] Length = 372 Score = 463 bits (1193), Expect = e-128, Method: Composition-based stats. Identities = 163/381 (42%), Positives = 219/381 (57%), Gaps = 23/381 (6%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 +K +L+ + R+E+ L +G R QI KWIY G +F M++I++ +R Sbjct: 2 TTEKTNLLNLTRQEMRHFLADLG----EKPFRADQIMKWIYHYGEDNFDNMTNINKVLRE 57 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L Q I PEI E+ S DGT KW ++ +IE+VYIPE R TLCVSSQV Sbjct: 58 KLKQVAEIKAPEIAVEQRSFDGTIKWAMQVGD------QQIESVYIPEADRATLCVSSQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L C+FC T Q RNLT EI+ QV A ++G F + R I+N+ Sbjct: 112 GCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKVIGAFGETKV----------RPITNV 161 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++GE I V LAIS Sbjct: 162 VMMGMGEPLLNVSNVVPAMEIMLDDFGYGLSKRRVTLSTSGVVPALDKLGEMIDVALAIS 221 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDAL 300 LHA +++LRN +VP+N+KY +EML+D+ Y +SNA ++T EYVML +ND A Sbjct: 222 LHAPNDELRNEIVPLNKKYNIEMLMDSVNRYLKISNANHGKVTIEYVMLDHVNDEVEHAH 281 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L K+LK P KINLIP+NP+P Y S I F + + G++ +R RG DI A Sbjct: 282 QLAKVLKNTPCKINLIPWNPFPEAPYNKSSNTRIDRFQKTLMEYGFTVIVRKTRGDDIDA 341 Query: 361 ACGQLKSLS-KRIPKVPRQEM 380 ACGQL R + ++ Sbjct: 342 ACGQLAGDVIDRTKRTAQKRA 362 >gi|271501574|ref|YP_003334600.1| radical SAM enzyme, Cfr family [Dickeya dadantii Ech586] gi|270345129|gb|ACZ77894.1| radical SAM enzyme, Cfr family [Dickeya dadantii Ech586] Length = 392 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 158/380 (41%), Positives = 216/380 (56%), Gaps = 23/380 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ R+++ ++G R Q+ KW+Y DF M+DI++ +R L Sbjct: 24 EKINLLDFNRQQMRAFFAQLG----EKPFRADQVMKWMYHYCCDDFNQMTDINKVLRGKL 79 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+VDE+ S DGT KW + + +ETVYIPE R TLCVSSQVGC Sbjct: 80 QAIAEIRAPEVVDEQRSSDGTIKWAI------LVDGQRVETVYIPEDDRATLCVSSQVGC 133 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNL EI+ QV A ++G + R I+N+VM Sbjct: 134 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AAKVTGQRPITNVVM 183 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 184 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 243 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++++RN ++PIN+KY +E + A R Y SNA R+T EYVML IND A L Sbjct: 244 APTDEIRNEIMPINKKYDIETFLAAVRRYLDKSNANQGRVTVEYVMLDHINDGTEHAHQL 303 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AAC Sbjct: 304 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 363 Query: 363 GQLKSL-SKRIPKVPRQEMQ 381 GQL R + +++M+ Sbjct: 364 GQLAGEVVDRTKRTLKKKME 383 >gi|269140148|ref|YP_003296849.1| hypothetical protein ETAE_2805 [Edwardsiella tarda EIB202] gi|267985809|gb|ACY85638.1| hypothetical protein ETAE_2805 [Edwardsiella tarda EIB202] gi|304559982|gb|ADM42646.1| Ribosomal RNA large subunit methyltransferase N [Edwardsiella tarda FL6-60] Length = 411 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 160/379 (42%), Positives = 215/379 (56%), Gaps = 23/379 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+++ E +++G R QI KWIY DF M+DI++ +R L Sbjct: 43 EKINLLDLDRKQMREFFIQMG----EKPFRADQIMKWIYHYCCDDFDVMTDINKVLRAKL 98 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q I PE+ E+ S DGT KW L+ +ETVYIPE R TLCVSSQVGC Sbjct: 99 KQVAEIRAPEVAVEQRSSDGTIKWALQVGD------QRVETVYIPEDDRATLCVSSQVGC 152 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNL EI+ QV A ++G + R I+N+VM Sbjct: 153 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AQKVTGNRPITNVVM 202 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 203 MGMGEPLLNLTNVIPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 262 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++ +R+ +VPINRKY ++M + + R Y SNA R+T EYVML IND A L Sbjct: 263 APNDAIRDEIVPINRKYNIDMFLGSVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQL 322 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + LK P KINLIP+NP+PG + S I FS+ + G++ +R RG DI AAC Sbjct: 323 AECLKDTPCKINLIPWNPFPGAPFGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAAC 382 Query: 363 GQLKSLS-KRIPKVPRQEM 380 GQL R + +++ Sbjct: 383 GQLAGEVIDRTKRTLKKQA 401 >gi|163793899|ref|ZP_02187873.1| radical SAM family enzyme [alpha proteobacterium BAL199] gi|159181010|gb|EDP65527.1| radical SAM family enzyme [alpha proteobacterium BAL199] Length = 389 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 202/373 (54%), Positives = 263/373 (70%), Gaps = 18/373 (4%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + L+G+ R+ L L IG+P RT QIW W+Y RG DFQ M+ +++ +R L Sbjct: 30 RPDLLGLERDALAAVLDGIGLPA----FRTGQIWHWLYHRGATDFQTMTTLAKPLRARLA 85 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + F I P +V + S DGT KWLLRF E E V+IPE+ RGTLCVSSQVGC+ Sbjct: 86 ETFRISRPSVVTRQDSIDGTIKWLLRF-----ADGNEAEAVFIPEEDRGTLCVSSQVGCT 140 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQ+LVRNLT+ EI+ QV++A LG +P R ++NIV+M Sbjct: 141 LTCSFCHTGTQRLVRNLTSAEIVGQVMVALDHLGAYPTG---------GPNRPLTNIVLM 191 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ I D G++ SKRRITLSTSG VP +A+ G ++GV LAISLHA Sbjct: 192 GMGEPLYNFDNVASAMRIIMDGEGVALSKRRITLSTSGVVPMMAQCGADLGVNLAISLHA 251 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ +R+ LVPINRK+P+ L+DACR YPGL+NARRITFEYVML G+ND+P DA L+ + Sbjct: 252 TTDTVRDDLVPINRKWPIAELLDACRRYPGLNNARRITFEYVMLAGVNDAPADARRLVAL 311 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 ++GIPAKINLIPFNPWPG +Y+CSD I F++ + +GY+SP+RTPRG DILAACGQL Sbjct: 312 IEGIPAKINLIPFNPWPGSKYVCSDPDTIERFAQIVLAAGYASPVRTPRGRDILAACGQL 371 Query: 366 KSLSKRIPKVPRQ 378 KS S ++ + + Sbjct: 372 KSESAKLTRREAR 384 >gi|94495790|ref|ZP_01302369.1| hypothetical protein SKA58_14447 [Sphingomonas sp. SKA58] gi|94424482|gb|EAT09504.1| hypothetical protein SKA58_14447 [Sphingomonas sp. SKA58] Length = 420 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 192/389 (49%), Positives = 265/389 (68%), Gaps = 16/389 (4%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + L+G+ R +++ + G+ + ++R+ QI+ W+Y RG DF M+D+++ +R + Sbjct: 31 RVDLMGLSRAQIKSVFEEAGLDAKAAKLRSKQIFHWLYHRGETDFDAMTDLAKPMRGWMA 90 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + F + P++V+ ++S DGTRKWLLR + E V+IP+ RGTLCVSSQVGC+ Sbjct: 91 ERFVVGRPQVVEAQVSSDGTRKWLLR-----SDDGQDYEMVFIPDADRGTLCVSSQVGCT 145 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP---------GCEDIEGMVIPSVG 176 L CSFC+TGT +LVRNLT EI+ QV+LAR LG++P E E S G Sbjct: 146 LNCSFCHTGTMRLVRNLTPGEIVGQVMLARDALGEWPKGSMASANDDDEGDEASHYTSDG 205 Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236 R ++NIVMMGMGEPL NFD+V+ +L + D GL+ SKRRITLSTSG +P +AR GEEIG Sbjct: 206 RMLTNIVMMGMGEPLYNFDHVRDALKVVMDGDGLALSKRRITLSTSGVIPMMARAGEEIG 265 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 V LA+SLH V+ D+R+ LVP+NRK+ +E L+ AC YPG +NARRITFEYVM+K NDS Sbjct: 266 VNLAVSLHGVTKDVRDELVPLNRKFGIEELLAACAAYPGANNARRITFEYVMIKDKNDSD 325 Query: 297 RDALNLIKILKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 DA L+++L+ +PAK+NLIPFNPWPG +Y CS + I FS+ + G S+P+RTPR Sbjct: 326 ADARELVRLLRHYKLPAKVNLIPFNPWPGTDYECSTPERIRRFSDIVFEGGISAPVRTPR 385 Query: 355 GLDILAACGQLKSLSKRIPKVPRQEMQIT 383 G DI+AACGQLKS S++ K + + Sbjct: 386 GRDIMAACGQLKSASEKKSKAEMRRLAEE 414 >gi|85374384|ref|YP_458446.1| Fe-S-cluster redox protein [Erythrobacter litoralis HTCC2594] gi|123409605|sp|Q2N9J2|RLMN_ERYLH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|84787467|gb|ABC63649.1| predicted Fe-S-cluster redox enzyme [Erythrobacter litoralis HTCC2594] Length = 418 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 188/374 (50%), Positives = 257/374 (68%), Gaps = 13/374 (3%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + L+G+ + ++E + G+ + ++R+ Q++ W+Y RG+ DF+ M+DI++ +R L Sbjct: 29 RVDLMGLPKARIQELFAEAGLDAKQAKLRSKQVYHWLYHRGVTDFEAMTDIAKTMRPWLA 88 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + F + P +V+ + S DGTRKWLL+ + E V+IP+ RGTLCVSSQVGC+ Sbjct: 89 ERFIVGRPNVVEAQHSTDGTRKWLLQT-----DDGHDFEMVFIPDADRGTLCVSSQVGCT 143 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC------EDIEGMVIPSVGRKI 179 L C FC+TGT +LVRNLT EI+ QV+LAR LG++P + + + GR + Sbjct: 144 LNCRFCHTGTMRLVRNLTPGEIVGQVMLARDALGEWPKGRMDGLDDVEDTGHYSADGRLL 203 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 +NIVMMGMGEPL NFDNV+ +L + D GL+ SKRRITLSTSG VP + R GEEIGV L Sbjct: 204 TNIVMMGMGEPLYNFDNVRDALKLVMDGEGLALSKRRITLSTSGVVPMMERCGEEIGVNL 263 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHAV+ D+R+ +VPIN+KY +E L+ AC YPG SNARRITFEYVMLK ND+ A Sbjct: 264 AVSLHAVTKDIRDEIVPINKKYGIEELLQACADYPGASNARRITFEYVMLKDKNDTDEHA 323 Query: 300 LNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 L+++LK +PAK+NLIPFNPWPG Y CS + I FS + G S+P+RTPRG D Sbjct: 324 RELVRLLKQYNLPAKVNLIPFNPWPGAAYECSTPERIRAFSNIVFEGGISAPVRTPRGRD 383 Query: 358 ILAACGQLKSLSKR 371 I AACGQLK+ +++ Sbjct: 384 IDAACGQLKTAAQK 397 >gi|241758847|ref|ZP_04756960.1| radical SAM enzyme, Cfr family [Neisseria flavescens SK114] gi|261380196|ref|ZP_05984769.1| radical SAM enzyme, Cfr family [Neisseria subflava NJ9703] gi|241321055|gb|EER57268.1| radical SAM enzyme, Cfr family [Neisseria flavescens SK114] gi|284797045|gb|EFC52392.1| radical SAM enzyme, Cfr family [Neisseria subflava NJ9703] Length = 362 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 158/377 (41%), Positives = 232/377 (61%), Gaps = 20/377 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ L + ++G R Q+ +W++ G ++F+ M+D+++ +R LN Sbjct: 2 KTNLLNYDLNGLTQHFAEMG----EKPFRAKQVMRWMHQAGAQNFEEMTDLAKSLRAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + +I P+++ + S DGTRKWLL +G +ETV+IPE RGTLC+SSQVGC+ Sbjct: 58 EQATIEVPKLMMAQESTDGTRKWLL-----DVGTGNGVETVFIPEAERGTLCISSQVGCA 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC TG Q RNLTA EI+ Q+ A +G V P R ISN+VMM Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEP+ NFDNV +LSI D G S+RR+T+STSG VP + R+ + + V LA+SLHA Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDAMPVALAVSLHA 221 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++R+ +VP+N+KYPL+ L+ AC+ Y + ITFEYVML GIND + A LI++ Sbjct: 222 SNDEVRDQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +K +P K NLIPFNP+P Y S ++I F + ++++G+ +R RG DI AACGQL Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYERSTNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341 Query: 366 KSLSKRIPKVPRQEMQI 382 + + ++ QI Sbjct: 342 AGQVQDKTRRQQKWQQI 358 >gi|298368581|ref|ZP_06979899.1| radical SAM enzyme, Cfr family [Neisseria sp. oral taxon 014 str. F0314] gi|298282584|gb|EFI24071.1| radical SAM enzyme, Cfr family [Neisseria sp. oral taxon 014 str. F0314] Length = 364 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 156/377 (41%), Positives = 230/377 (61%), Gaps = 20/377 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ L ++G R Q+ +W++ G ++F M+D+++ +R L Sbjct: 2 KTNLLNYDLNSLTRHFAEMG----EKPFRAKQVMRWMHQAGAQNFDEMTDLAKSLRQKLI 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + +I P+++ + S DGTRKWLL +G +ETV+IPE RGTLC+SSQVGC+ Sbjct: 58 EGATIEVPKLMAAQESSDGTRKWLL-----DVGTGNGVETVFIPETDRGTLCISSQVGCA 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC TG Q RNLTA EI+ Q+ A +G V P R ISN+VMM Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEP+ NFDNV +LSI D+ G S+RR+T+STSG VP + R+ + + V LA+SLHA Sbjct: 162 GMGEPMANFDNVVTALSIMLDNHGYGLSRRRVTVSTSGMVPQMDRLRDAMPVALAVSLHA 221 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++R+ +VP+N+KYPL+ L+ AC+ Y + ITFEYVML G+ND+ + A LI + Sbjct: 222 SNDEVRDKIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGVNDNAQHARELIDL 281 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 ++ +P K NLIPFNP+P Y S ++I F + ++++G+ +R RG DI AACGQL Sbjct: 282 VRDVPCKFNLIPFNPFPHSGYERSSAENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341 Query: 366 KSLSKRIPKVPRQEMQI 382 K + ++ QI Sbjct: 342 AGQVKDKTRRQQKWQQI 358 >gi|70732281|ref|YP_262037.1| radical SAM protein [Pseudomonas fluorescens Pf-5] gi|123748356|sp|Q4K6U6|RLMN_PSEF5 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|68346580|gb|AAY94186.1| radical SAM enzyme, Cfr family [Pseudomonas fluorescens Pf-5] Length = 382 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 166/377 (44%), Positives = 226/377 (59%), Gaps = 21/377 (5%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 + K +L+G+ + E+E+ IG R R Q+ KWI+ G+ DF M+++ + +R Sbjct: 4 SIGKTNLLGLTQPEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVGKALRE 59 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L I PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ Sbjct: 60 KLKAVAEIRGPEVVSEDISSDGTRKWVVR-----VASGSCVETVYIPQGKRGTLCVSSQA 114 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L CSFC TG Q NLTA E++ QV +A G P D R I+N+ Sbjct: 115 GCALDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNV 164 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+S Sbjct: 165 VMMGMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALS 224 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALN 301 LHA ++ LRN LVPIN+KYPL+ML+++C+ Y +R+ T EY +LK +ND A+ Sbjct: 225 LHAPNDALRNQLVPINKKYPLKMLLESCQRYMSALGEKRVLTIEYTLLKDVNDKLEHAVE 284 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +I++LK +P KINLIPFNP+P Y I F + + +G++ +RT RG DI AA Sbjct: 285 MIELLKDVPCKINLIPFNPFPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAA 344 Query: 362 CGQLKSLS-KRIPKVPR 377 CGQL R + R Sbjct: 345 CGQLVGQVLDRTRRSER 361 >gi|307295042|ref|ZP_07574884.1| radical SAM enzyme, Cfr family [Sphingobium chlorophenolicum L-1] gi|306879516|gb|EFN10734.1| radical SAM enzyme, Cfr family [Sphingobium chlorophenolicum L-1] Length = 419 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 192/388 (49%), Positives = 265/388 (68%), Gaps = 15/388 (3%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + L+G+ R +++ AL + G+ + ++R+ Q++ W+Y RG DF M+D+++ +R + Sbjct: 31 RVDLMGLSRPQIKSALEEAGLDVKQAKLRSKQLFHWLYHRGETDFDAMTDLAKPMRGWMA 90 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + F + PE+V+ ++S DGTRKWLLR + E V+IP+ RGTLCVSSQVGC+ Sbjct: 91 ERFVVGRPEVVEAQVSSDGTRKWLLR-----SDDGQDYEMVFIPDADRGTLCVSSQVGCT 145 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP--------GCEDIEGMVIPSVGR 177 L C FC+TGT +LVRNLT EI+ QV+LAR LG++P E + GR Sbjct: 146 LNCRFCHTGTMRLVRNLTPGEIVGQVMLARDALGEWPKGSMASVNDDEADDASQYSPDGR 205 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 ++NIVMMGMGEPL NFD+V+ +L + D GL+ SKRRITLSTSG VP +AR GEEIGV Sbjct: 206 MLTNIVMMGMGEPLYNFDHVRDALKVVMDGDGLALSKRRITLSTSGVVPMMARAGEEIGV 265 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 LA+SLHAV+ D+R+ LVP+NRKY +E L+ AC YPG +NARRITFEYVM++ NDS Sbjct: 266 NLAVSLHAVTKDVRDELVPLNRKYGIEDLLQACADYPGANNARRITFEYVMIRDKNDSDD 325 Query: 298 DALNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 DA L+++L+ +PAK+NLIPFNPWPG +Y CS + I FS+ + G S+P+RTPRG Sbjct: 326 DARELVRLLRQYKLPAKVNLIPFNPWPGTDYECSTPERIRRFSDIVFEGGISAPVRTPRG 385 Query: 356 LDILAACGQLKSLSKRIPKVPRQEMQIT 383 DI+AACGQLKS S++ + + Sbjct: 386 RDIMAACGQLKSASEKKSRAELDRLAAE 413 >gi|121635020|ref|YP_975265.1| hypothetical protein NMC1245 [Neisseria meningitidis FAM18] gi|254805109|ref|YP_003083330.1| hypothetical protein NMO_1149 [Neisseria meningitidis alpha14] gi|205829823|sp|A1KUD6|RLMN_NEIMF RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|120866726|emb|CAM10479.1| conserved hypothetical protein [Neisseria meningitidis FAM18] gi|254668651|emb|CBA06309.1| conserved hypothetical protein [Neisseria meningitidis alpha14] gi|325132491|gb|EGC55184.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M6190] gi|325138265|gb|EGC60834.1| radical SAM enzyme, Cfr family [Neisseria meningitidis ES14902] gi|325142519|gb|EGC64920.1| radical SAM enzyme, Cfr family [Neisseria meningitidis 961-5945] gi|325198460|gb|ADY93916.1| radical SAM enzyme, Cfr family [Neisseria meningitidis G2136] Length = 364 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 160/377 (42%), Positives = 230/377 (61%), Gaps = 20/377 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + L +G R Q+ +W++ G ++F M+D+++ +RH LN Sbjct: 2 KTNLLNYDLQGLTRHFADMG----EKPFRAKQVMRWMHQSGAQNFNEMTDLAKSLRHKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I P+++ + S DGTRKWLL +G +ETV+IPE RGTLC+SSQVGC+ Sbjct: 58 EQAGIEIPKLMMSQKSSDGTRKWLL-----DVGTGNGVETVFIPESDRGTLCISSQVGCA 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC TG Q RNLTA EI+ Q+ A +G V P R ISN+VMM Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEP+ NFDNV +LSI D G S+RR+T+STSG VP + R+ + + V LA+SLHA Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHA 221 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++RN +VP+N+KYPL+ L+ AC+ Y + ITFEYVML GIND + A LI++ Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +K +P K NLIPFNP+P Y S ++I F + ++++G+ +R RG DI AACGQL Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341 Query: 366 KSLSKRIPKVPRQEMQI 382 + + ++ QI Sbjct: 342 AGQVQDKTRRQQKWQQI 358 >gi|74316609|ref|YP_314349.1| hypothetical protein Tbd_0591 [Thiobacillus denitrificans ATCC 25259] gi|123773051|sp|Q3SL73|RLMN_THIDA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|74056104|gb|AAZ96544.1| Conserved hypothetical protein [Thiobacillus denitrificans ATCC 25259] Length = 372 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 159/378 (42%), Positives = 212/378 (56%), Gaps = 13/378 (3%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++L+ L + G R Q++ WI+ G+ DF M+DI++ +R L Sbjct: 3 QNLLDFDLAGLTAWFGERG----EKPFRARQVFHWIHQAGVTDFAQMTDIAKSLREKLQN 58 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + P I +S DGTRKWL +G IETV+IPE RGTLCVSSQVGC+L Sbjct: 59 EAVVQAPAINFAHLSADGTRKWLF-----DVGVGNGIETVFIPEDDRGTLCVSSQVGCAL 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC TG Q RNLT EI+ Q+ +A+ L P + R ++N+VMMG Sbjct: 114 ECTFCSTGRQGFNRNLTVAEIVGQLWVAQHSLKREPNRTASDHGAGEIAERPVTNVVMMG 173 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL NF+NV +L + D S+RR+T+STSG VP + R+ E V LA+SLHA Sbjct: 174 MGEPLANFENVVTALGVMLDDHAYGLSRRRVTVSTSGLVPAMDRLAERCPVALAVSLHAP 233 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ LR+ +VPINRKYPL L+ ACR Y + ITFEYVML G+ND P A LI + Sbjct: 234 NDALRDQIVPINRKYPLAELMAACRRYLVHAPRDFITFEYVMLAGVNDQPEHARQLIALT 293 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + +P K NLIPFNP+P Y + + F E ++ +GY R RG DI AACGQL Sbjct: 294 RDVPCKFNLIPFNPFPDSGYEKPRAEAMRVFREILQDAGYVVTTRKTRGDDIDAACGQLA 353 Query: 367 S----LSKRIPKVPRQEM 380 S R+ K +E Sbjct: 354 GRVADRSGRVMKRVHREA 371 >gi|87118480|ref|ZP_01074379.1| radical SAM enzyme, Cfr family protein [Marinomonas sp. MED121] gi|86166114|gb|EAQ67380.1| radical SAM enzyme, Cfr family protein [Marinomonas sp. MED121] Length = 378 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 168/383 (43%), Positives = 230/383 (60%), Gaps = 18/383 (4%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +KK +L+G+ +++ E IG + R +Q+ KWI+ +G DF M+D+S+ + Sbjct: 8 MTDVKKVNLLGLPPKKMIEFFESIG----EKKFRATQVLKWIHQKGADDFDQMTDVSKAL 63 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 RH L I PE+V + IS DGTRKW++R GG +ETV IP+ R TLCVSS Sbjct: 64 RHKLKDISEIRAPEVVSQNISNDGTRKWIIRTEG---GGNNCVETVLIPDGDRATLCVSS 120 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGCSL CSFC TG Q RNLT E++ QV +A G F P+ R+++ Sbjct: 121 QVGCSLDCSFCSTGKQGFNRNLTPSEVIGQVWVAIKSFGPFD----------PNGPRRVT 170 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL NF+ V ++++ D SKRR+TLSTSG VP I + E V LA Sbjct: 171 NVVMMGMGEPLMNFEPVVDAMTLMMDDNAYGMSKRRVTLSTSGVVPKIYELAERTDVSLA 230 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP-GLSNARRITFEYVMLKGINDSPRDA 299 ISLHA +N+LR++LVPIN+KYP+ L+ AC+HY L + R IT EY M+ G+NDS A Sbjct: 231 ISLHAPTNELRDVLVPINKKYPINELLGACQHYLTSLPDKRHITIEYTMMAGVNDSEEQA 290 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L K+LK + KINLIPFNP+P Y + F + + GY+ +RT RG DI Sbjct: 291 RALSKLLKTLECKINLIPFNPFPNSGYDKPSNNQVRRFQKVLADDGYTVTVRTTRGDDID 350 Query: 360 AACGQLKSLSKRIPKVPRQEMQI 382 AACGQL + ++ +++ Sbjct: 351 AACGQLVGDFHDKTRRSQKYIEL 373 >gi|330807644|ref|YP_004352106.1| hypothetical protein PSEBR_a933 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375752|gb|AEA67102.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 382 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 166/374 (44%), Positives = 225/374 (60%), Gaps = 21/374 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ + E+E+ IG R R Q+ KWI+ G+ DF M+++ + +R L Sbjct: 7 KTNLLGLTQPEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVGKALREKLK 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I PE+V + IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 63 AVAEIRGPEVVSQDISSDGTRKWVVR-----VASGSCVETVYIPQGKRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV +A G P D R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVVSAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304 ++ LRN LVPIN+KYPL+ML+++C+ Y +R+ T EY +LK +ND A+ +I+ Sbjct: 228 PNDALRNQLVPINKKYPLKMLLESCQRYMSSLGEKRVLTIEYTLLKDVNDKVEHAVEMIE 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK IP KINLIPFNP+P Y I F + + +G++ +RT RG DI AACGQ Sbjct: 288 LLKNIPCKINLIPFNPFPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQ 347 Query: 365 LKSLS-KRIPKVPR 377 L R + R Sbjct: 348 LVGQVLDRTRRSER 361 >gi|297530651|ref|YP_003671926.1| radical SAM enzyme, Cfr family [Geobacillus sp. C56-T3] gi|297253903|gb|ADI27349.1| radical SAM enzyme, Cfr family [Geobacillus sp. C56-T3] Length = 365 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 128/366 (34%), Positives = 200/366 (54%), Gaps = 25/366 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 S+ + +EL+E L+ G R +QI++W+Y + DF M+++ + +R L Sbjct: 20 PSIYSLTLDELKEWLVAQG----EKPFRATQIYEWLYQNRVTDFADMTNLPKRLREQLAS 75 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 FSI + V ++ S DGT K+L IETV + ++CV++QVGC + Sbjct: 76 SFSITTLKTVVKQTSKDGTIKFLFELHD-----GYSIETVLMRHHYGNSVCVTTQVGCRI 130 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC + L R+L A EI+ QV+ + L D ++S+IV+MG Sbjct: 131 GCTFCASTLGGLKRHLEAGEIVAQVVQVQKALDD--------------TNERVSSIVVMG 176 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 +GEP N+D + K L I + GL+ R IT+STSG +P I + +E + + AISLHA Sbjct: 177 IGEPFDNYDALIKFLRIVNHPKGLNIGARHITVSTSGIIPKIYQFADEGMQINFAISLHA 236 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +N+LR L+PIN+ YPL L++A R+Y + R+TFEY + G+ND A L ++ Sbjct: 237 PTNELRTKLMPINKAYPLPKLMEAVRYYIEKTGR-RVTFEYGLFGGVNDQLEHAEQLAEL 295 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +KG+ +NLIP N P Y+ + + I F +K+ G + IR G DI AACGQL Sbjct: 296 IKGLKCHVNLIPVNYVPERNYVRTPRSQIFAFERALKKHGINVTIRREHGHDIDAACGQL 355 Query: 366 KSLSKR 371 ++ ++ Sbjct: 356 RAKERK 361 >gi|144899244|emb|CAM76108.1| conserved hypothetical protein [Magnetospirillum gryphiswaldense MSR-1] Length = 380 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 203/382 (53%), Positives = 259/382 (67%), Gaps = 19/382 (4%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +LIG+ R++L + IG R Q+W W+Y RG DF M+ IS+ ++ L Sbjct: 6 QKTNLIGLSRDQLTAEMASIG----EKPFRAKQLWHWLYNRGETDFLKMTSISKVMQERL 61 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS--RGTLCVSSQV 122 + + + P + E S D TRKWLL+F E ETVYIP++ RG +C+SSQV Sbjct: 62 AERYVVRRPLVERELTSVDTTRKWLLKF-----DDGNEAETVYIPDEDEQRGAVCISSQV 116 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+LTC FC+TGTQ LVRNLTA EI+ Q +LAR G++P +D R +SNI Sbjct: 117 GCTLTCKFCHTGTQLLVRNLTAAEIVGQFMLARDSYGEWPTPDD--------TTRLLSNI 168 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL NFDNV +L I D G+ S+RRITLSTSG VP + R G E+GV LAIS Sbjct: 169 VMMGMGEPLYNFDNVATALKIIMDGEGIGISRRRITLSTSGVVPMMGRAGAELGVNLAIS 228 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHAV++++RN ++PIN+KYPL+ L+ ACR YPG SNARRITFEYVMLKGINDS DA L Sbjct: 229 LHAVTDEVRNQIMPINKKYPLKELMQACRDYPGASNARRITFEYVMLKGINDSLADAREL 288 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++++KG+PAK NLIPFNPWPG +Y CS +DI FS+ I+ +GYS+PIR RG DILAAC Sbjct: 289 LRLVKGLPAKFNLIPFNPWPGSDYECSSMRDIRAFSDLIQDNGYSAPIRKSRGADILAAC 348 Query: 363 GQLKSLSKRIPKVPRQEMQITG 384 GQL+S S+R E G Sbjct: 349 GQLRSESQRQKCSRLNERVAAG 370 >gi|322831763|ref|YP_004211790.1| radical SAM enzyme, Cfr family [Rahnella sp. Y9602] gi|321166964|gb|ADW72663.1| radical SAM enzyme, Cfr family [Rahnella sp. Y9602] Length = 399 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 157/378 (41%), Positives = 216/378 (57%), Gaps = 23/378 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E + +G R Q+ KW+Y DF+ M+DI++ +R L Sbjct: 31 KINLLDLNRKQMREFFINMG----EKPFRADQVMKWMYHYCSDDFEQMTDINKALREKLA 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+ E+ S DGT KW ++ G +ETVYIP+ R TLCVSSQVGC+ Sbjct: 87 RVAEIRAPEVASEQRSTDGTIKWAIQV------GGQLVETVYIPDGDRATLCVSSQVGCA 140 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC T Q RNL EI+ QV A ++G + R I+N+VMM Sbjct: 141 LECTFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AAKVAGTRPITNVVMM 190 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 191 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++ +R+ +VPINRKY ++ + A Y SNA R+T EYVML IND A L Sbjct: 251 PNDAIRDEIVPINRKYNIDTFLAAVERYISKSNANQGRVTIEYVMLDHINDGTEHAHELA 310 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 + LK P KINLIP+NP+PG Y S I FS+ + G++ +R RG DI AACG Sbjct: 311 ERLKNTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTVIVRKTRGDDIDAACG 370 Query: 364 QLKSLS-KRIPKVPRQEM 380 QL R + +++M Sbjct: 371 QLAGDVIDRTKRTLKKKM 388 >gi|161870181|ref|YP_001599351.1| hypothetical protein NMCC_1221 [Neisseria meningitidis 053442] gi|205829821|sp|A9LZN6|RLMN_NEIM0 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|161595734|gb|ABX73394.1| conserved hypothetical protein [Neisseria meningitidis 053442] Length = 364 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 161/377 (42%), Positives = 230/377 (61%), Gaps = 20/377 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + L G R Q+ +W++ G ++F M+D+++ +RH LN Sbjct: 2 KTNLLNYDLQGLTRHFADTG----EKPFRAKQVMRWMHQSGAQNFNEMTDLAKSLRHKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + SI P+++ + S DGTRKWLL +G +ETV+IPE RGTLC+SSQVGC+ Sbjct: 58 EQASIEIPKLMMSQESSDGTRKWLL-----DVGTGNGVETVFIPESDRGTLCISSQVGCA 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC TG Q RNLTA EI+ Q+ A +G V P R ISN+VMM Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEP+ NFDNV +LSI D G S+RR+T+STSG VP + R+ + + V LA+SLHA Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHA 221 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++RN +VP+N+KYPL+ L+ AC+ Y + ITFEYVML GIND + A LI++ Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDRAQHARELIEL 281 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +K +P K NLIPFNP+P Y S ++I F + ++++G+ +R RG DI AACGQL Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341 Query: 366 KSLSKRIPKVPRQEMQI 382 + + ++ QI Sbjct: 342 AGQVQDKTRRQQKWQQI 358 >gi|242240158|ref|YP_002988339.1| ribosomal RNA large subunit methyltransferase N [Dickeya dadantii Ech703] gi|242132215|gb|ACS86517.1| radical SAM enzyme, Cfr family [Dickeya dadantii Ech703] Length = 393 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 158/380 (41%), Positives = 214/380 (56%), Gaps = 23/380 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ +G R Q+ KWIY DF M+DI++ +R L Sbjct: 25 KINLLDLNRQQMRAFFAALG----EKPFRADQVMKWIYHYCCDDFNQMTDINKALRTRLQ 80 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I P++VDE+ S DGT KW + + +ETVYIPE R TLCVSSQVGC+ Sbjct: 81 AIAEIRAPDVVDEQRSSDGTIKWAI------LVDGQRVETVYIPEDDRATLCVSSQVGCA 134 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + R I+N+VMM Sbjct: 135 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AAKVTGQRPITNVVMM 184 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 185 GMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 244 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++RN ++PIN+KY +E + A R Y SNA R+T EYVML IND A L Sbjct: 245 PTDEIRNEIMPINKKYDIETFLAAVRRYLDKSNANQGRVTVEYVMLDHINDGTEHAHQLA 304 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AACG Sbjct: 305 ECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 364 Query: 364 QLKSL-SKRIPKVPRQEMQI 382 QL R + +++M Sbjct: 365 QLAGEVVDRTKRTLKKKMAE 384 >gi|50122145|ref|YP_051312.1| ribosomal RNA large subunit methyltransferase N [Pectobacterium atrosepticum SCRI1043] gi|81644326|sp|Q6D273|RLMN_ERWCT RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|49612671|emb|CAG76121.1| conserved hypothetical protein [Pectobacterium atrosepticum SCRI1043] Length = 398 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 162/378 (42%), Positives = 220/378 (58%), Gaps = 23/378 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ + + +G R Q+ KW+Y DF M+DI++ R L Sbjct: 31 KINLLDLNRQQMRDLFMSMG----EKPFRADQVMKWMYHYCCDDFNQMTDINKVFRTKLQ 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+VDE+ S DGT KW + + G +ETVYIPE+ R TLCVSSQVGC+ Sbjct: 87 EIAEIRAPEVVDEQRSSDGTIKWAI------LVGGQRVETVYIPEEERATLCVSSQVGCA 140 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G F + R I+N+VMM Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAFKV----------TGQRPITNVVMM 190 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 191 GMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++D+RN ++PIN+KY +EM + A R Y SNA R+T EYVML IND A L Sbjct: 251 PTDDIRNEIMPINKKYNIEMFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQLA 310 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AACG Sbjct: 311 ECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 370 Query: 364 QLKSL-SKRIPKVPRQEM 380 QL R + +++M Sbjct: 371 QLAGEVVDRTKRTLKKKM 388 >gi|238753878|ref|ZP_04615238.1| Ribosomal RNA large subunit methyltransferase N [Yersinia ruckeri ATCC 29473] gi|238707866|gb|EEQ00224.1| Ribosomal RNA large subunit methyltransferase N [Yersinia ruckeri ATCC 29473] Length = 398 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 159/379 (41%), Positives = 220/379 (58%), Gaps = 23/379 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K +L+ + R+++ E ++G R Q+ KW+Y DF+ M+DI++ +R L Sbjct: 30 NKINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKVLRAKL 85 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PE+ +E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC Sbjct: 86 QRVAEIRAPEVAEEQRSTDGTIKWAIKVGD------QQVETVYIPEGDRATLCVSSQVGC 139 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNL EI+ QV A ++G + + R I+N+VM Sbjct: 140 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------SLKSTGTRPITNVVM 189 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 190 MGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 249 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302 A ++D+R+ +VPINRKY +E + A R Y SN R+T EYVML INDS A L Sbjct: 250 APTDDIRDEIVPINRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQL 309 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AAC Sbjct: 310 AECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 369 Query: 363 GQLKSLS-KRIPKVPRQEM 380 GQL R + +++M Sbjct: 370 GQLAGEVIDRTKRTLKKKM 388 >gi|229592444|ref|YP_002874563.1| hypothetical protein PFLU5060 [Pseudomonas fluorescens SBW25] gi|259491993|sp|C3K1L7|RLMN_PSEFS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|229364310|emb|CAY52051.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25] Length = 382 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 169/374 (45%), Positives = 227/374 (60%), Gaps = 21/374 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ + E+E+ IG R R Q+ KWI+ G+ DF M+++S+ +R L Sbjct: 7 KTNLLGLTQPEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALRDKLK 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 63 AIAEVRGPEVVSEDISSDGTRKWVVR-----VASGSCVETVYIPQGKRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV +A G P D R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304 ++ LRN LVPIN+KYPL+ML+++C+ Y +R+ T EY MLK IND A+ +I+ Sbjct: 228 PNDALRNQLVPINKKYPLKMLLESCQRYMATLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK P KINLIPFNP+P Y I F + + ++GY+ +RT RG DI AACGQ Sbjct: 288 LLKNTPCKINLIPFNPFPHSGYERPSNNAIRRFQDQLHQAGYNVTVRTTRGEDIDAACGQ 347 Query: 365 L-KSLSKRIPKVPR 377 L + R + R Sbjct: 348 LVGQVMDRTRRSER 361 >gi|152995382|ref|YP_001340217.1| radical SAM protein [Marinomonas sp. MWYL1] gi|205829788|sp|A6VV03|RLMN_MARMS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|150836306|gb|ABR70282.1| radical SAM enzyme, Cfr family [Marinomonas sp. MWYL1] Length = 371 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 162/383 (42%), Positives = 224/383 (58%), Gaps = 18/383 (4%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +KK +L+G+ E+L E IG + R +Q+ KWI+ +G F+ M+D+S+ + Sbjct: 1 MTDIKKVNLLGLSPEKLIEFFESIG----EKKFRATQVIKWIHQKGAESFEEMTDVSKAL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L Q I PE+V + IS DGTRKW++R G +ETV IP+ R TLCVSS Sbjct: 57 RAKLEQICEIRGPEVVSQNISTDGTRKWIIRTEG---GKNDCVETVLIPDGDRATLCVSS 113 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGCSL CSFC TG Q RNLT EI+ QV +A G P+ R+++ Sbjct: 114 QVGCSLDCSFCSTGKQGFNRNLTPAEIIGQVWIAIKSFGPMD----------PNGPRRVT 163 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL NF+ V ++ + SKRR+TLSTSG VP I + + V LA Sbjct: 164 NVVMMGMGEPLMNFEPVVDAMILMMHDHAYGLSKRRVTLSTSGVVPKIYELVKRTDVSLA 223 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDA 299 ISLHA ++ LRN LVPIN+KYP+ L++AC+ Y L + R IT EY ++ G+ND+ A Sbjct: 224 ISLHAPNDALRNELVPINKKYPIAELLEACQFYLENLPDKRHITIEYTLMSGVNDNEEQA 283 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L ++LK + KINLIPFNP+P Y F + + +GY+ +RT RG DI Sbjct: 284 HELAELLKVLECKINLIPFNPFPHSGYEKPSNNRTRRFQKILADAGYTVTVRTTRGDDID 343 Query: 360 AACGQLKSLSKRIPKVPRQEMQI 382 AACGQL + ++ +++ Sbjct: 344 AACGQLVGDFHDKTRRSQKYIEL 366 >gi|56419709|ref|YP_147027.1| ribosomal RNA large subunit methyltransferase N [Geobacillus kaustophilus HTA426] gi|81347651|sp|Q5L0S1|RLMN_GEOKA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|56379551|dbj|BAD75459.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 365 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 128/366 (34%), Positives = 200/366 (54%), Gaps = 25/366 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 S+ + +EL+E L+ G R +QI++W+Y + DF M+++ + +R L Sbjct: 20 PSIYSLTLDELKEWLVAQG----EKPFRATQIYEWLYQNRVTDFADMTNLPKRLREQLAS 75 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 FSI + V ++ S DGT K+L IETV + ++CV++QVGC + Sbjct: 76 SFSITTLKTVVKQTSKDGTIKFLFELHD-----GYSIETVLMRHNYGNSVCVTTQVGCRI 130 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC + L R+L A EI+ QV+ + L D ++S+IV+MG Sbjct: 131 GCTFCASTLGGLKRHLEAGEIVAQVVQVQKALDD--------------TNERVSSIVVMG 176 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 +GEP N+D + K L I + GL+ R IT+STSG +P I + +E + + AISLHA Sbjct: 177 IGEPFDNYDALIKFLRIVNHPKGLNIGARHITVSTSGIIPKIYQFADEGMQINFAISLHA 236 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +N+LR L+PIN+ YPL L++A R+Y + R+TFEY + G+ND A L ++ Sbjct: 237 PTNELRTKLMPINKAYPLPKLMEAVRYYIEKTGR-RVTFEYGLFGGVNDQLEHAEQLAEL 295 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +KG+ +NLIP N P Y+ + + I F +K+ G + IR G DI AACGQL Sbjct: 296 IKGLKCHVNLIPVNYVPERNYVRTPRSQIFAFERALKKHGINVTIRREHGHDIDAACGQL 355 Query: 366 KSLSKR 371 ++ ++ Sbjct: 356 RAKERK 361 >gi|238788173|ref|ZP_04631968.1| Ribosomal RNA large subunit methyltransferase N [Yersinia frederiksenii ATCC 33641] gi|238723760|gb|EEQ15405.1| Ribosomal RNA large subunit methyltransferase N [Yersinia frederiksenii ATCC 33641] Length = 398 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 159/378 (42%), Positives = 220/378 (58%), Gaps = 23/378 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E ++G R Q+ KW+Y DF+ M+DI++ +R L Sbjct: 31 KINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKGLRAKLQ 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+ +E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC+ Sbjct: 87 RVAEIRAPEVAEEQRSIDGTIKWAIKVGD------QQVETVYIPEGDRATLCVSSQVGCA 140 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + + R I+N+VMM Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------SLKSTGTRPITNVVMM 190 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 191 GMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNLI 303 ++D+R+ +VPINRKY +E + A R Y SN R+T EYVML INDS A L Sbjct: 251 PTDDIRDEIVPINRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQLA 310 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AACG Sbjct: 311 ECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 370 Query: 364 QLKSLS-KRIPKVPRQEM 380 QL R + +++M Sbjct: 371 QLAGEVIDRTKRTLKKKM 388 >gi|186896255|ref|YP_001873367.1| ribosomal RNA large subunit methyltransferase N [Yersinia pseudotuberculosis PB1/+] gi|205829930|sp|B2K9Q3|RLMN_YERPB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|186699281|gb|ACC89910.1| radical SAM enzyme, Cfr family [Yersinia pseudotuberculosis PB1/+] Length = 398 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 160/378 (42%), Positives = 221/378 (58%), Gaps = 23/378 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E ++G R Q+ KW+Y DF+ M+DI++ +R L Sbjct: 31 KINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKGLRAKLQ 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+ +E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC+ Sbjct: 87 RVAEIRAPEVAEEQRSVDGTIKWAIKVGD------QQVETVYIPEADRATLCVSSQVGCA 140 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + + R I+N+VMM Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------SLKSTGTRPITNVVMM 190 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 191 GMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPRDALNLI 303 ++D+R+ +VPINRKY +EM + A R Y S N R+T EYVML INDS A L Sbjct: 251 PTDDIRDEIVPINRKYNIEMFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSTEQAHQLA 310 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AACG Sbjct: 311 ECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 370 Query: 364 QLKSLS-KRIPKVPRQEM 380 QL R + +++M Sbjct: 371 QLAGEVIDRTKRTLKKKM 388 >gi|58038729|ref|YP_190693.1| putative Fe-S-cluster redox protein [Gluconobacter oxydans 621H] gi|81352583|sp|Q5FUA9|RLMN_GLUOX RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|58001143|gb|AAW60037.1| Putative Fe-S-cluster redox enzyme [Gluconobacter oxydans 621H] Length = 407 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 183/373 (49%), Positives = 255/373 (68%), Gaps = 18/373 (4%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + L+G+ REEL + +IG R Q+W WIY +G DF M+ I++ ++ L Sbjct: 47 RRDLVGLSREELAALMTEIG----EKPFRAKQLWHWIYHQGATDFSAMTTIAKPMQAKLA 102 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK--SRGTLCVSSQVG 123 +HF + P E+ S D TRK+L RF E ETVYIP++ RG +C+SSQVG Sbjct: 103 EHFVVSRPTTATEQTSVDETRKFLFRFRD-----GQEAETVYIPDRREDRGAVCISSQVG 157 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L+C+FC+TGTQKLVRNL EI+ Q + AR G++P + R +S IV Sbjct: 158 CTLSCTFCHTGTQKLVRNLGPAEIVGQFMAARDSYGEWPSPSA-------DMPRYLSTIV 210 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 +MGMGEPL N++NV K++ I D G++ S+RRITLSTSG VP + R G+E+G+ LAISL Sbjct: 211 LMGMGEPLYNYENVAKAMRIIMDGEGIALSRRRITLSTSGVVPMMDRCGDELGINLAISL 270 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HAV+N+LR+ +VP+NRKYP+E LI ACR YP SN+RRITFEY+ML+G+NDS DA L+ Sbjct: 271 HAVTNELRDQIVPLNRKYPIEELIAACRRYPAASNSRRITFEYIMLRGVNDSEADARELV 330 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++++ +PAK+NLIPFNPWPG ++ S ++ + F+ + +G++SPIRTPRG DILAACG Sbjct: 331 RLIRDLPAKVNLIPFNPWPGSDFQPSTRQQLTKFANIVMDAGFASPIRTPRGQDILAACG 390 Query: 364 QLKSLSKRIPKVP 376 QLK+ S+R + Sbjct: 391 QLKTESERQRRSA 403 >gi|319638408|ref|ZP_07993170.1| ribosomal RNA large subunit methyltransferase N [Neisseria mucosa C102] gi|317400157|gb|EFV80816.1| ribosomal RNA large subunit methyltransferase N [Neisseria mucosa C102] Length = 362 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 158/377 (41%), Positives = 232/377 (61%), Gaps = 20/377 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ L + ++G R Q+ +W++ G ++F+ M+D+++ +R LN Sbjct: 2 KTNLLNYDLNGLTQHFAEMG----EKPFRAKQVMRWMHQAGAQNFEEMTDLAKSLRAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + +I P+++ + S DGTRKWLL +G +ETV+IPE RGTLC+SSQVGC+ Sbjct: 58 EQATIEVPKLMMAQESTDGTRKWLL-----DVGTGNGVETVFIPEAERGTLCISSQVGCA 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC TG Q RNLTA EI+ Q+ A +G V P R ISN+VMM Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEP+ NFDNV +LSI D G S+RR+T+STSG VP + R+ + + V LA+SLHA Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDAMPVALAVSLHA 221 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++R+ +VP+N+KYPL+ L+ AC+ Y + ITFEYVML GIND + A LI++ Sbjct: 222 SNDEVRDQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +K +P K NLIPFNP+P Y S ++I F + ++++G+ +R RG DI AACGQL Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYERSTNENIRIFRDILQQAGFVVTVRKTRGDDIDAACGQL 341 Query: 366 KSLSKRIPKVPRQEMQI 382 + + ++ QI Sbjct: 342 AGQVQDKTRRQQKWQQI 358 >gi|22125249|ref|NP_668672.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis KIM 10] gi|45442520|ref|NP_994059.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis biovar Microtus str. 91001] gi|51597160|ref|YP_071351.1| ribosomal RNA large subunit methyltransferase N [Yersinia pseudotuberculosis IP 32953] gi|108808316|ref|YP_652232.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis Antiqua] gi|108811419|ref|YP_647186.1| hypothetical protein YPN_1256 [Yersinia pestis Nepal516] gi|145599499|ref|YP_001163575.1| hypothetical protein YPDSF_2227 [Yersinia pestis Pestoides F] gi|149365342|ref|ZP_01887377.1| hypothetical protein YPE_0496 [Yersinia pestis CA88-4125] gi|162419386|ref|YP_001605027.1| hypothetical protein YpAngola_A0421 [Yersinia pestis Angola] gi|165926002|ref|ZP_02221834.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar Orientalis str. F1991016] gi|165937119|ref|ZP_02225684.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar Orientalis str. IP275] gi|166008394|ref|ZP_02229292.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar Antiqua str. E1979001] gi|166212301|ref|ZP_02238336.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar Antiqua str. B42003004] gi|167399541|ref|ZP_02305065.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421243|ref|ZP_02312996.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423347|ref|ZP_02315100.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|218929942|ref|YP_002347817.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis CO92] gi|229838462|ref|ZP_04458621.1| predicted enzyme [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895163|ref|ZP_04510339.1| predicted enzyme [Yersinia pestis Pestoides A] gi|229899029|ref|ZP_04514173.1| predicted enzyme [Yersinia pestis biovar Orientalis str. India 195] gi|229901676|ref|ZP_04516798.1| predicted enzyme [Yersinia pestis Nepal516] gi|270489871|ref|ZP_06206945.1| radical SAM enzyme, Cfr family [Yersinia pestis KIM D27] gi|294504556|ref|YP_003568618.1| hypothetical protein YPZ3_2446 [Yersinia pestis Z176003] gi|81638860|sp|Q667Z6|RLMN_YERPS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123372276|sp|Q1C5I5|RLMN_YERPA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123373337|sp|Q1CK94|RLMN_YERPN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123776892|sp|Q7CJM9|RLMN_YERPE RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829931|sp|A9R805|RLMN_YERPG RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829932|sp|A4TMU0|RLMN_YERPP RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|21958119|gb|AAM84923.1|AE013737_5 hypothetical protein y1350 [Yersinia pestis KIM 10] gi|45437385|gb|AAS62936.1| Predicted Fe-S-cluster redox enzyme [Yersinia pestis biovar Microtus str. 91001] gi|51590442|emb|CAH22082.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP 32953] gi|108775067|gb|ABG17586.1| hypothetical protein YPN_1256 [Yersinia pestis Nepal516] gi|108780229|gb|ABG14287.1| hypothetical protein YPA_2322 [Yersinia pestis Antiqua] gi|115348553|emb|CAL21493.1| conserved hypothetical protein [Yersinia pestis CO92] gi|145211195|gb|ABP40602.1| hypothetical protein YPDSF_2227 [Yersinia pestis Pestoides F] gi|149291755|gb|EDM41829.1| hypothetical protein YPE_0496 [Yersinia pestis CA88-4125] gi|162352201|gb|ABX86149.1| radical SAM domain protein, Cfr family [Yersinia pestis Angola] gi|165914982|gb|EDR33594.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar Orientalis str. IP275] gi|165922206|gb|EDR39383.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar Orientalis str. F1991016] gi|165992776|gb|EDR45077.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar Antiqua str. E1979001] gi|166206232|gb|EDR50712.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar Antiqua str. B42003004] gi|166960732|gb|EDR56753.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167052045|gb|EDR63453.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057517|gb|EDR67263.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229681605|gb|EEO77699.1| predicted enzyme [Yersinia pestis Nepal516] gi|229687974|gb|EEO80046.1| predicted enzyme [Yersinia pestis biovar Orientalis str. India 195] gi|229694828|gb|EEO84875.1| predicted enzyme [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701925|gb|EEO89948.1| predicted enzyme [Yersinia pestis Pestoides A] gi|262362449|gb|ACY59170.1| hypothetical protein YPD4_2263 [Yersinia pestis D106004] gi|262366544|gb|ACY63101.1| hypothetical protein YPD8_2426 [Yersinia pestis D182038] gi|270338375|gb|EFA49152.1| radical SAM enzyme, Cfr family [Yersinia pestis KIM D27] gi|294355015|gb|ADE65356.1| hypothetical protein YPZ3_2446 [Yersinia pestis Z176003] gi|320016019|gb|ADV99590.1| putative enzyme [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 398 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 159/378 (42%), Positives = 220/378 (58%), Gaps = 23/378 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E ++G R Q+ KW+Y DF+ M+DI++ +R L Sbjct: 31 KINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKGLRAKLQ 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+ +E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC+ Sbjct: 87 RVAEIRAPEVAEEQRSVDGTIKWAIKVGD------QQVETVYIPEADRATLCVSSQVGCA 140 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + + R I+N+VMM Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------SLKSTGTRPITNVVMM 190 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 191 GMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPRDALNLI 303 ++D+R+ +VPINRKY +E + A R Y S N R+T EYVML INDS A L Sbjct: 251 PTDDIRDEIVPINRKYNIETFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSTEQAHQLA 310 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AACG Sbjct: 311 ECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 370 Query: 364 QLKSLS-KRIPKVPRQEM 380 QL R + +++M Sbjct: 371 QLAGEVIDRTKRTLKKKM 388 >gi|294010894|ref|YP_003544354.1| hypothetical protein SJA_C1-09080 [Sphingobium japonicum UT26S] gi|292674224|dbj|BAI95742.1| conserved hypothetical protein [Sphingobium japonicum UT26S] Length = 419 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 192/388 (49%), Positives = 265/388 (68%), Gaps = 15/388 (3%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + L+G+ R ++ AL + G+ + ++R+ Q++ W+Y RG DF M+D+++ +R + Sbjct: 31 RVDLMGLSRPQIRGALEEAGLDVKQAKLRSKQLFHWLYHRGETDFDAMTDLAKPMRGWMA 90 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + F + PE+V+ ++S DGTRKWLLR + E V+IP+ RGTLCVSSQVGC+ Sbjct: 91 ERFVVGRPEVVEAQVSSDGTRKWLLR-----SDDGQDYEMVFIPDADRGTLCVSSQVGCT 145 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP--------GCEDIEGMVIPSVGR 177 L C FC+TGT +LVRNLT EI+ QV+LAR LG++P E + + GR Sbjct: 146 LNCRFCHTGTMRLVRNLTPGEIVGQVMLARDALGEWPKGSMASANDDEADDASQYSTDGR 205 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 ++NIVMMGMGEPL NFD+V+ +L + D GL+ SKRRITLSTSG VP +AR GEEIGV Sbjct: 206 MLTNIVMMGMGEPLYNFDHVRDALKVVMDGDGLALSKRRITLSTSGVVPMMARAGEEIGV 265 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 LA+SLHAV+ D+R+ LVP+N+KY +E L+ AC YPG +NARRITFEYVM+K NDS Sbjct: 266 NLAVSLHAVTKDVRDELVPLNKKYGIEDLLQACADYPGANNARRITFEYVMIKDKNDSDA 325 Query: 298 DALNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 DA L+++L+ +PAK+NLIPFNPWPG +Y CS + I FS+ + G S+P+RTPRG Sbjct: 326 DARELVRLLRQYKLPAKVNLIPFNPWPGTDYECSTPERIRRFSDIVFEGGISAPVRTPRG 385 Query: 356 LDILAACGQLKSLSKRIPKVPRQEMQIT 383 DI+AACGQLKS S++ + + Sbjct: 386 RDIMAACGQLKSASEKKSRAELDRLAAE 413 >gi|238763546|ref|ZP_04624507.1| Ribosomal RNA large subunit methyltransferase N [Yersinia kristensenii ATCC 33638] gi|238698178|gb|EEP90934.1| Ribosomal RNA large subunit methyltransferase N [Yersinia kristensenii ATCC 33638] Length = 398 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 160/378 (42%), Positives = 220/378 (58%), Gaps = 23/378 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E ++G R Q+ KW+Y DF+ M+DI++ +R L Sbjct: 31 KINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKVLRAKLQ 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+ +E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC+ Sbjct: 87 RVAEIRAPEVAEEQRSTDGTIKWAIKVGD------QQVETVYIPEGDRATLCVSSQVGCA 140 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G V + R I+N+VMM Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AVKATGIRPITNVVMM 190 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 191 GMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNLI 303 ++D+R+ +VPINRKY +E + A R Y SN R+T EYVML INDS A L Sbjct: 251 PTDDIRDEIVPINRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQLA 310 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AACG Sbjct: 311 ECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 370 Query: 364 QLKSLS-KRIPKVPRQEM 380 QL R + +++M Sbjct: 371 QLAGEVIDRTKRTLKKKM 388 >gi|212710618|ref|ZP_03318746.1| hypothetical protein PROVALCAL_01684 [Providencia alcalifaciens DSM 30120] gi|212686699|gb|EEB46227.1| hypothetical protein PROVALCAL_01684 [Providencia alcalifaciens DSM 30120] Length = 399 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 159/379 (41%), Positives = 220/379 (58%), Gaps = 23/379 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+++ E ++G R Q+ KWIY DF M+DI++ +R L Sbjct: 31 QKINLLDLNRKQMREFFAELG----EKPFRADQVMKWIYHYCFDDFDQMTDINKVLRAKL 86 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PE+ DE+ S DGT KW ++ + +ETVYIPE R TLCVSSQVGC Sbjct: 87 KEVAEIRAPEVADEQRSSDGTIKWAIKVGDQL------VETVYIPEADRATLCVSSQVGC 140 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNL EI+ QV A ++G + S R I+N+VM Sbjct: 141 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------SLKSSGRRPITNVVM 190 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D G SKRR+T+STSG VP + ++G+ I V LAISLH Sbjct: 191 MGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTISTSGVVPALDKLGDMIDVALAISLH 250 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++D+R+ +VPIN+KY +E + + Y SNA R+T EYVML INDS A L Sbjct: 251 APTDDVRDEIVPINKKYNIETFLASVNRYLTKSNANAGRVTVEYVMLDHINDSVEQAHQL 310 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + LK P+KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AAC Sbjct: 311 AECLKNTPSKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAAC 370 Query: 363 GQLKSLS-KRIPKVPRQEM 380 GQL R + ++ + Sbjct: 371 GQLAGDVIDRTKRTLKKRL 389 >gi|153948736|ref|YP_001400164.1| ribosomal RNA large subunit methyltransferase N [Yersinia pseudotuberculosis IP 31758] gi|170023536|ref|YP_001720041.1| ribosomal RNA large subunit methyltransferase N [Yersinia pseudotuberculosis YPIII] gi|205829929|sp|A7FFY6|RLMN_YERP3 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829933|sp|B1JS02|RLMN_YERPY RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|152960231|gb|ABS47692.1| radical SAM domain protein, Cfr family [Yersinia pseudotuberculosis IP 31758] gi|169750070|gb|ACA67588.1| radical SAM enzyme, Cfr family [Yersinia pseudotuberculosis YPIII] Length = 398 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 159/378 (42%), Positives = 220/378 (58%), Gaps = 23/378 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E ++G R Q+ KW+Y DF+ M+DI++ +R L Sbjct: 31 KINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKGLRAKLQ 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+ +E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC+ Sbjct: 87 RVAEIRAPEVAEEQRSVDGTIKWAIKVGD------QQVETVYIPEADRATLCVSSQVGCA 140 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + + R I+N+VMM Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------SLKSTGTRPITNVVMM 190 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 191 GMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPRDALNLI 303 ++D+R+ +VPINRKY +E + A R Y S N R+T EYVML INDS A L Sbjct: 251 PTDDIRDEIVPINRKYNIETFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSTEQAHQLA 310 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AACG Sbjct: 311 ECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 370 Query: 364 QLKSLS-KRIPKVPRQEM 380 QL R + +++M Sbjct: 371 QLAGEVIDRTKRTLKKKM 388 >gi|226946070|ref|YP_002801143.1| hypothetical protein Avin_40320 [Azotobacter vinelandii DJ] gi|226720997|gb|ACO80168.1| Conserved hypothetical protein [Azotobacter vinelandii DJ] Length = 381 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 171/379 (45%), Positives = 227/379 (59%), Gaps = 21/379 (5%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN K +L+G+ + +LE IG R R Q+ KWI+ G+ DF MS+I + + Sbjct: 1 MNETTKANLLGLTQPQLESFFESIG----EKRFRAGQVMKWIHHFGVDDFDAMSNIGKAL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L I PE+V + IS DGTRKW++R + +ETVYIP+ RGTLCVSS Sbjct: 57 REKLKACAEIRGPEVVSQDISGDGTRKWVVR-----VASGSCVETVYIPQAGRGTLCVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GCSL CSFC TG Q +LTA EI+ QV +A G PG D R I+ Sbjct: 112 QAGCSLDCSFCSTGKQGFNSDLTAAEIIGQVWIANKSFGTVPGKID----------RAIT 161 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL NFDN ++ I D +G SKR++TLSTSG P I +G+ I V LA Sbjct: 162 NVVMMGMGEPLMNFDNAVAAMQIMMDDLGYGISKRKVTLSTSGVAPMIDELGKIIDVSLA 221 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDA 299 +SLHA +++LRN LVPINRKYPL ++DACR Y +R+ T EY +LK +ND P A Sbjct: 222 LSLHAPNDELRNRLVPINRKYPLAQVLDACRRYISRLGEKRVLTVEYTLLKDVNDQPEHA 281 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++++L+ +P KINLIPFNP+P Y I F + + ++G++ +RT RG DI Sbjct: 282 AQMVELLRDVPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHKAGHNVTVRTTRGEDID 341 Query: 360 AACGQL-KSLSKRIPKVPR 377 AACGQL + R + R Sbjct: 342 AACGQLVGQVMDRTRRSER 360 >gi|123441415|ref|YP_001005402.1| ribosomal RNA large subunit methyltransferase N [Yersinia enterocolitica subsp. enterocolitica 8081] gi|205829928|sp|A1JKR9|RLMN_YERE8 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|122088376|emb|CAL11167.1| conserved hypothetical protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 398 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 160/378 (42%), Positives = 220/378 (58%), Gaps = 23/378 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E ++G R Q+ KW+Y DF+ M+DI++ +R L Sbjct: 31 KINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKGLRAKLQ 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+ +E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC+ Sbjct: 87 RVAEIRAPEVAEEQRSTDGTIKWAIKVGD------QQVETVYIPEGDRATLCVSSQVGCA 140 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G V + R I+N+VMM Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AVKATGIRPITNVVMM 190 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 191 GMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNLI 303 ++D+R+ +VPINRKY +E + A R Y SN R+T EYVML INDS A L Sbjct: 251 PTDDIRDEIVPINRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQLA 310 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AACG Sbjct: 311 ECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 370 Query: 364 QLKSLS-KRIPKVPRQEM 380 QL R + +++M Sbjct: 371 QLAGEVIDRTKRTLKKKM 388 >gi|15803040|ref|NP_289070.1| hypothetical protein Z3780 [Escherichia coli O157:H7 EDL933] gi|12516911|gb|AAG57627.1|AE005481_3 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] Length = 384 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 156/382 (40%), Positives = 213/382 (55%), Gaps = 23/382 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+ Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + R I+N+VMM Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+ E + A R Y SNA R+T EYVML +ND A L Sbjct: 237 PNDEIRDEIVPINKXXNXETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+P Y S I FS+ + G+++ +R RG DI AACG Sbjct: 297 ELLKDTPCKINLIPWNPFPAAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACG 356 Query: 364 QLKSLS-KRIPKVPRQEMQITG 384 QL R + R+ MQ Sbjct: 357 QLAGDVIDRTKRTLRKRMQGEA 378 >gi|114568582|ref|YP_755262.1| radical SAM protein [Maricaulis maris MCS10] gi|122317061|sp|Q0ATR3|RLMN_MARMM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|114339044|gb|ABI64324.1| 23S rRNA m(2)A-2503 methyltransferase [Maricaulis maris MCS10] Length = 396 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 191/378 (50%), Positives = 264/378 (69%), Gaps = 15/378 (3%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 SL GM REEL + G+ ++ +MR Q+W+WIY G+ F M++IS+++R ++ Sbjct: 26 PSLAGMTREELRLVAIDCGVEEKKAKMRAEQLWRWIYHYGVTSFDEMTNISKDLRAVIAD 85 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCS 125 +++ P+++D ++S DGTRK+L+ VE ETV+IP+ +R G LCVSSQVGC+ Sbjct: 86 KYALHRPKLIDRQVSVDGTRKYLIELAP-----GVECETVFIPDVARSGALCVSSQVGCT 140 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC+TGTQ LVRNLTA EI+ QV++AR L ++P + RKI+NIV M Sbjct: 141 LNCTFCHTGTQALVRNLTAAEIVAQVMIARDDLDEWPTSNE---------NRKITNIVFM 191 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N D+V S+ I SD G++ S+RR T+STSG VP I +G G MLAISLHA Sbjct: 192 GMGEPLYNLDHVATSIDIISDGEGIAISRRRTTVSTSGVVPKIEELGARTGTMLAISLHA 251 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ LR+ LVP+N+KYPL L++A R YPGL N++R+TFEYVMLKG+NDS +A L+K+ Sbjct: 252 TNDTLRDELVPLNKKYPLVELMNAIRAYPGLGNSKRVTFEYVMLKGVNDSLAEAKALVKL 311 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKGIPAKINLIPFNPWP Y CSD I F++ + ++GY+SPIRTPRG DI AACGQL Sbjct: 312 LKGIPAKINLIPFNPWPKSPYECSDWDQIEAFADVVNKAGYASPIRTPRGRDIFAACGQL 371 Query: 366 KSLSKRIPKVPRQEMQIT 383 +S S+++ ++ ++ Sbjct: 372 RSESQKVKASVLRKQRLA 389 >gi|15677174|ref|NP_274327.1| hypothetical protein NMB1308 [Neisseria meningitidis MC58] gi|81784539|sp|Q9JZ42|RLMN_NEIMB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|7226549|gb|AAF41683.1| conserved hypothetical protein [Neisseria meningitidis MC58] gi|316984107|gb|EFV63085.1| radical SAM enzyme, Cfr family [Neisseria meningitidis H44/76] gi|325130328|gb|EGC53094.1| radical SAM enzyme, Cfr family [Neisseria meningitidis OX99.30304] gi|325136188|gb|EGC58796.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M0579] gi|325140467|gb|EGC62988.1| radical SAM enzyme, Cfr family [Neisseria meningitidis CU385] gi|325200066|gb|ADY95521.1| radical SAM enzyme, Cfr family [Neisseria meningitidis H44/76] gi|325201981|gb|ADY97435.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M01-240149] gi|325208268|gb|ADZ03720.1| radical SAM enzyme, Cfr family [Neisseria meningitidis NZ-05/33] Length = 364 Score = 461 bits (1187), Expect = e-128, Method: Composition-based stats. Identities = 159/377 (42%), Positives = 229/377 (60%), Gaps = 20/377 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + L +G R Q+ +W++ G ++F M+D+++ +RH LN Sbjct: 2 KTNLLNYDLQGLTRHFADMG----EKPFRAKQVMRWMHQSGAQNFDEMTDLAKSLRHKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I P+++ + S DGTRKWLL +G +ETV+IPE RGTLC+SSQVGC+ Sbjct: 58 EQAGIEIPKLMMSQKSSDGTRKWLL-----DVGTGNGVETVFIPESDRGTLCISSQVGCA 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC TG Q RNLTA EI+ Q+ A +G V P R ISN+VMM Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEP+ NFDNV +LSI D G S+RR+T+STSG VP + R+ + + V LA+SLHA Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHA 221 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++RN +VP+N+KYPL+ L+ AC+ Y + ITFEYVML GIND + A LI++ Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + +P K NLIPFNP+P Y S ++I F + ++++G+ +R RG DI AACGQL Sbjct: 282 VTDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341 Query: 366 KSLSKRIPKVPRQEMQI 382 + + ++ QI Sbjct: 342 AGQVQDKTRRQQKWQQI 358 >gi|261419372|ref|YP_003253054.1| ribosomal RNA large subunit methyltransferase N [Geobacillus sp. Y412MC61] gi|319766187|ref|YP_004131688.1| radical SAM enzyme, Cfr family [Geobacillus sp. Y412MC52] gi|261375829|gb|ACX78572.1| radical SAM enzyme, Cfr family [Geobacillus sp. Y412MC61] gi|317111053|gb|ADU93545.1| radical SAM enzyme, Cfr family [Geobacillus sp. Y412MC52] Length = 365 Score = 461 bits (1187), Expect = e-128, Method: Composition-based stats. Identities = 128/366 (34%), Positives = 200/366 (54%), Gaps = 25/366 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 S+ + +EL+E L+ G R +QI++W+Y + DF M+++ + +R L Sbjct: 20 PSIYSLTLDELKEWLVAQG----EKPFRATQIYEWLYKNRVTDFADMTNLPKRLREQLAS 75 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 FSI + V ++ S DGT K+L IETV + ++CV++QVGC + Sbjct: 76 SFSITTLKTVVKQTSKDGTIKFLFELHD-----GYSIETVLMRHNYGNSVCVTTQVGCRI 130 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC + L R+L A EI+ QV+ + L D ++S+IV+MG Sbjct: 131 GCTFCASTLGGLKRHLEAGEIVAQVVQVQKALDD--------------TNERVSSIVVMG 176 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 +GEP N+D + K L I + GL+ R IT+STSG +P I + +E + + AISLHA Sbjct: 177 IGEPFDNYDALIKFLRIVNHPKGLNIGARHITVSTSGIIPKIYQFADEGMQINFAISLHA 236 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +N+LR L+PIN+ YPL L++A R+Y + R+TFEY + G+ND A L ++ Sbjct: 237 PTNELRTKLMPINKAYPLPKLMEAVRYYIEKTGR-RVTFEYGLFGGVNDQLEHAEQLAEL 295 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +KG+ +NLIP N P Y+ + + I F +K+ G + IR G DI AACGQL Sbjct: 296 IKGLKCHVNLIPVNYVPERNYVRTPRSQIFAFERALKKHGINVTIRREHGHDIDAACGQL 355 Query: 366 KSLSKR 371 ++ ++ Sbjct: 356 RAKERK 361 >gi|238794833|ref|ZP_04638434.1| Ribosomal RNA large subunit methyltransferase N [Yersinia intermedia ATCC 29909] gi|238725846|gb|EEQ17399.1| Ribosomal RNA large subunit methyltransferase N [Yersinia intermedia ATCC 29909] Length = 398 Score = 461 bits (1187), Expect = e-128, Method: Composition-based stats. Identities = 160/378 (42%), Positives = 220/378 (58%), Gaps = 23/378 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ + ++G R Q+ KWIY DF+ M+DI++ +R L Sbjct: 31 KINLLDLNRQQMRQFFAEMG----EKPFRADQVMKWIYHYCFDDFEQMTDINKVLRAKLQ 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+ +E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC+ Sbjct: 87 RVAEIRAPEVTEEQRSTDGTIKWAIKVGD------QQVETVYIPEGDRATLCVSSQVGCA 140 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G V + R I+N+VMM Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AVKATGIRPITNVVMM 190 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 191 GMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPRDALNLI 303 ++D+R+ +VPINRKY +E + A R Y S N R+T EYVML INDS A L Sbjct: 251 PTDDIRDEIVPINRKYNIEAFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSVEQAHQLA 310 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AACG Sbjct: 311 ECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 370 Query: 364 QLKSLS-KRIPKVPRQEM 380 QL R + +++M Sbjct: 371 QLAGEVIDRTKRTLKKKM 388 >gi|258542583|ref|YP_003188016.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus IFO 3283-01] gi|256633661|dbj|BAH99636.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus IFO 3283-01] gi|256636720|dbj|BAI02689.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus IFO 3283-03] gi|256639773|dbj|BAI05735.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus IFO 3283-07] gi|256642829|dbj|BAI08784.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus IFO 3283-22] gi|256645884|dbj|BAI11832.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus IFO 3283-26] gi|256648937|dbj|BAI14878.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus IFO 3283-32] gi|256651924|dbj|BAI17858.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654981|dbj|BAI20908.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus IFO 3283-12] Length = 408 Score = 461 bits (1187), Expect = e-128, Method: Composition-based stats. Identities = 190/372 (51%), Positives = 255/372 (68%), Gaps = 18/372 (4%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + L+G+ R+EL + L +IG RT Q+W WIY +G+ DF MS I++ ++ L Sbjct: 47 RRDLVGLSRDELTDILTEIG----EKPFRTKQLWHWIYHQGVTDFSRMSTIAKPLQQKLA 102 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK--SRGTLCVSSQVG 123 + F I PE + S D TRK+L RF E ETVYIP++ RG +C+SSQVG Sbjct: 103 ERFIIGRPEAATVQTSSDETRKFLFRFRD-----GQEAETVYIPDRREDRGAVCISSQVG 157 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L+C+FC+TGTQKLVRNL A EI+ Q + AR G++P + R +S IV Sbjct: 158 CTLSCTFCHTGTQKLVRNLGAAEIVSQFMAARDSYGEWPSPKG-------ETPRLLSTIV 210 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 +MGMGEPL N++NV K++ I D G+ S+RRITLSTSG VP + R G+E+G+ LA+SL Sbjct: 211 LMGMGEPLYNYENVAKAMKIIMDGEGIGLSRRRITLSTSGVVPLMDRCGDELGINLAVSL 270 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HAV NDLR+ +VP+NRKYP+E ++ ACR YP SNARRITFEY+ML+GINDS DA L+ Sbjct: 271 HAVRNDLRDEIVPLNRKYPIEEVLAACRRYPAASNARRITFEYIMLRGINDSEADARELV 330 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +++ GIPAK+NLIPFNPWPG +Y S ++ F+E + +G++SPIRTPRG DILAACG Sbjct: 331 RLISGIPAKVNLIPFNPWPGSDYKPSTREQQNRFAEIVMNAGFASPIRTPRGRDILAACG 390 Query: 364 QLKSLSKRIPKV 375 QLK+ S+R Sbjct: 391 QLKTASERARAS 402 >gi|94501127|ref|ZP_01307650.1| hypothetical protein RED65_06057 [Oceanobacter sp. RED65] gi|94426703|gb|EAT11688.1| hypothetical protein RED65_06057 [Oceanobacter sp. RED65] Length = 378 Score = 461 bits (1187), Expect = e-128, Method: Composition-based stats. Identities = 161/375 (42%), Positives = 224/375 (59%), Gaps = 21/375 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+G+ +++++ +++G R QI KWI+ GI +F M+++S+ +R L Sbjct: 6 EKVNLLGLSPKKMKDFFVELG----EKPFRAQQILKWIHQVGIDNFDDMTNVSKVMREKL 61 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 ++ YPE+V IS DGT+KW++R P G +ETVYIPE RGTLCVSSQ+GC Sbjct: 62 KDVATVQYPEVVFHDISKDGTKKWVMRMP-----GGSSVETVYIPEGDRGTLCVSSQIGC 116 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 SL CSFC TG Q R+L+ EI+ QV +A + RKI+N+VM Sbjct: 117 SLDCSFCSTGKQGFNRDLSVAEIIGQVYVAAKSFDKPGEKRE----------RKITNVVM 166 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV ++ + D SKRR+TLSTSG VP + + + V LA+SLH Sbjct: 167 MGMGEPLMNFDNVVDAMDLMMDDFCYGLSKRRVTLSTSGVVPKLYDLADVSDVSLAVSLH 226 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYP-GLSNARRITFEYVMLKGINDSPRDALNLI 303 A +++LRN LVPIN+KYP++ L+ AC HY LS+ R++T EY ++ +ND A L Sbjct: 227 APNDELRNELVPINKKYPIKDLMAACNHYMGSLSDRRKLTVEYTLINKVNDELEHAQQLA 286 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+LK P KINLIPFNP+P Y + F + + G+ IRT RG DI AACG Sbjct: 287 KLLKDTPCKINLIPFNPFPNSGYERPSNNRVYKFRDYLHSQGFIVTIRTTRGDDIDAACG 346 Query: 364 QLKSLSK-RIPKVPR 377 QL + R + R Sbjct: 347 QLVGKVEDRTRRSER 361 >gi|332162639|ref|YP_004299216.1| hypothetical protein YE105_C3019 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666869|gb|ADZ43513.1| hypothetical protein YE105_C3019 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330859271|emb|CBX69621.1| ribosomal RNA large subunit methyltransferase N [Yersinia enterocolitica W22703] Length = 397 Score = 461 bits (1187), Expect = e-128, Method: Composition-based stats. Identities = 159/378 (42%), Positives = 220/378 (58%), Gaps = 23/378 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E ++G R Q+ KW+Y DF+ M+DI++ +R L Sbjct: 30 KINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCFDDFEQMTDINKVLRAKLQ 85 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+ +E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC+ Sbjct: 86 RVAEIRAPEVAEEQRSTDGTIKWAIKVGD------QQVETVYIPEGDRATLCVSSQVGCA 139 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + + R I+N+VMM Sbjct: 140 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------SLKSTGTRPITNVVMM 189 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 190 GMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 249 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNLI 303 ++D+R+ +VPINRKY +E + A R Y SN R+T EYVML INDS A L Sbjct: 250 PTDDIRDEIVPINRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQLA 309 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AACG Sbjct: 310 ECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 369 Query: 364 QLKSLS-KRIPKVPRQEM 380 QL R + +++M Sbjct: 370 QLAGEVIDRTKRTLKKKM 387 >gi|119897215|ref|YP_932428.1| hypothetical protein azo0924 [Azoarcus sp. BH72] gi|205829650|sp|A1K3Y6|RLMN_AZOSB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|119669628|emb|CAL93541.1| conserved hypothetical protein [Azoarcus sp. BH72] Length = 375 Score = 461 bits (1187), Expect = e-128, Method: Composition-based stats. Identities = 161/385 (41%), Positives = 221/385 (57%), Gaps = 14/385 (3%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN +L+ + L + +G R Q+ +W++ G DF M+D+++ + Sbjct: 1 MNT--PVNLLDFDVDGLVDWFAGLG----EKPFRARQVMRWMHREGCDDFDQMTDVAKSL 54 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L + I P V + +S DGTRKWLL +G +ETV+IPE +RGTLCVSS Sbjct: 55 RAKLKEIAVIRPPVPVRDSVSSDGTRKWLL-----DVGNANAVETVFIPETNRGTLCVSS 109 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC+L C+FC TG Q RNLTA EI+ Q+ LA LLG GR IS Sbjct: 110 QAGCALDCAFCSTGKQGFNRNLTAAEIIGQLWLANKLLGAARDAAADLEAGEKDNGRIIS 169 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL NFDNV +L + D S+RR+T+STSG VP I R+ +E V LA Sbjct: 170 NVVMMGMGEPLANFDNVVTALRLMLDDHAYGLSRRRVTVSTSGIVPAIDRLRDECPVALA 229 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++ LR+ LVPIN+KYPL L+ AC+ Y + ITFEYVML G+ND A Sbjct: 230 VSLHASNDALRDRLVPINQKYPLRELMAACQRYLERAPRDFITFEYVMLDGVNDQEAHAR 289 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 LI +++ +P K NLIPFNP+P + S+ + I F+ + +G + R RG D+ A Sbjct: 290 ELIALVRDVPCKFNLIPFNPFPNSGFQRSNAERIRRFAGILLDAGIVTTTRKTRGDDVDA 349 Query: 361 ACGQLKSLSKRIPKVP---RQEMQI 382 ACGQL + + +Q M++ Sbjct: 350 ACGQLAGQVQDKTRRTVRLKQSMEV 374 >gi|253996236|ref|YP_003048300.1| radical SAM enzyme, Cfr family [Methylotenera mobilis JLW8] gi|253982915|gb|ACT47773.1| radical SAM enzyme, Cfr family [Methylotenera mobilis JLW8] Length = 367 Score = 461 bits (1186), Expect = e-128, Method: Composition-based stats. Identities = 154/373 (41%), Positives = 220/373 (58%), Gaps = 15/373 (4%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+ +++L + G R Q+ +W++ G+ DF+ M+DI++ +R L Sbjct: 2 VNLLNYNQKQLAQWFADRG----EKPFRAKQLMRWMHHFGVHDFEQMTDIAKNLREKLAV 57 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I P + ++S DGTRKWL+ IETV+IPE RGTLCVSSQVGC+L Sbjct: 58 DAEITLPTVQLAQVSNDGTRKWLI-----GTDTANSIETVFIPEDDRGTLCVSSQVGCAL 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC TG Q RNL+ EI+ QV +A L PG + ++P+ R ISN+VMMG Sbjct: 113 ECTFCSTGRQGFNRNLSVAEIIGQVAIANQTLRQEPGYD-----MLPANDRIISNVVMMG 167 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N+DNV ++ I D S+RR+TLSTSG VP + R+ E+ V LA+SLHA Sbjct: 168 MGEPLANYDNVVTAMQIMLDDSAYGLSRRRVTLSTSGMVPAMDRLKEDCPVALAVSLHAP 227 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ LR+++VPIN+KYPL+ L+ AC Y + +TFEYVML G+ND+ A L++++ Sbjct: 228 NDALRDVIVPINKKYPLKELMAACNRYLEKAPRDFVTFEYVMLDGVNDTVEHAHQLLELV 287 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 K + K NLIPFNP+P Y S + F + + ++GY +R RG DI AACGQL Sbjct: 288 KNVSCKFNLIPFNPFPNSGYDTSKPNHVRVFRDILMQAGYVVTVRKTRGDDIDAACGQLA 347 Query: 367 SLS-KRIPKVPRQ 378 + + R Sbjct: 348 GKVLDKTKRTARH 360 >gi|238752478|ref|ZP_04613954.1| Ribosomal RNA large subunit methyltransferase N [Yersinia rohdei ATCC 43380] gi|238709327|gb|EEQ01569.1| Ribosomal RNA large subunit methyltransferase N [Yersinia rohdei ATCC 43380] Length = 398 Score = 461 bits (1186), Expect = e-128, Method: Composition-based stats. Identities = 160/378 (42%), Positives = 220/378 (58%), Gaps = 23/378 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E K+G R Q+ KW+Y DF+ M+DI++ +R L Sbjct: 31 KINLLDLNRQQMREFFAKMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKGLRAKLQ 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+ +E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC+ Sbjct: 87 RVAEIRAPEVAEEQRSTDGTIKWAIKVGD------QQVETVYIPEGERATLCVSSQVGCA 140 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + + R I+N+VMM Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------ALKSTGTRPITNVVMM 190 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 191 GMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPRDALNLI 303 ++D+R+ +VPINRKY +E + A R Y S N R+T EYVML INDS A L Sbjct: 251 PTDDIRDEIVPINRKYNIETFLAAVRRYLAKSKANGGRVTVEYVMLDHINDSTEQAHQLA 310 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AACG Sbjct: 311 ECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 370 Query: 364 QLKSLS-KRIPKVPRQEM 380 QL R + +++M Sbjct: 371 QLAGEVIDRTKRTLKKKM 388 >gi|104780237|ref|YP_606735.1| radical SAM protein [Pseudomonas entomophila L48] gi|122985951|sp|Q1IEI4|RLMN_PSEE4 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|95109224|emb|CAK13921.1| putative radical SAM enzyme, Cfr family [Pseudomonas entomophila L48] Length = 379 Score = 461 bits (1186), Expect = e-128, Method: Composition-based stats. Identities = 167/374 (44%), Positives = 223/374 (59%), Gaps = 21/374 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ E+E+ IG R R Q+ KWI+ G+ DF M+++ + +R L Sbjct: 7 KINLLGLTLAEMEQFFDSIG----EKRFRAGQVMKWIHHFGVDDFAAMTNVGKVLREKLE 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I PE+V E IS DGTRKW++R + +ETVYIP RGTLCVSSQ GC+ Sbjct: 63 AVAEIRGPEVVSEDISADGTRKWVVR-----VASGSCVETVYIPTDDRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV LA G P D R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWLANKSFGTVPAKID----------RAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ I + +G SKRR+TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVIAAMKIMMEDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304 +++LRN LVPIN+KYPL+ML+++C Y +R+ T EY +LK +ND P A +I+ Sbjct: 228 PNDELRNKLVPINKKYPLKMLLESCMGYMSTLGGKRVLTIEYTLLKDVNDQPEHAAQMIE 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L+ +P KINLIPFNP+P Y I F + + G++ RT RG DI AACGQ Sbjct: 288 LLRDVPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQ 347 Query: 365 L-KSLSKRIPKVPR 377 L ++ R + R Sbjct: 348 LVGQVNDRTRRSER 361 >gi|292489050|ref|YP_003531937.1| hypothetical protein EAMY_2582 [Erwinia amylovora CFBP1430] gi|292900179|ref|YP_003539548.1| hypothetical protein EAM_2478 [Erwinia amylovora ATCC 49946] gi|291200027|emb|CBJ47152.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946] gi|291554484|emb|CBA22015.1| UPF0063 protein yfgB [Erwinia amylovora CFBP1430] gi|312173205|emb|CBX81460.1| UPF0063 protein yfgB [Erwinia amylovora ATCC BAA-2158] Length = 388 Score = 461 bits (1186), Expect = e-128, Method: Composition-based stats. Identities = 161/383 (42%), Positives = 220/383 (57%), Gaps = 23/383 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+++ E +G R Q+ KWIY DF M+DI++ R+ L Sbjct: 20 EKINLLDLNRQQMREFFASLG----EKPFRADQVMKWIYHYCCDDFNEMTDINKVFRNRL 75 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PE+ +E+ S DGT KW ++ G ++ETVYIPEK R TLCVSSQVGC Sbjct: 76 QELAEIRAPEVAEEQRSADGTIKWAIQV------GGQQVETVYIPEKDRATLCVSSQVGC 129 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNL EI+ QV A ++G + R I+N+VM Sbjct: 130 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AAKVTGQRPITNVVM 179 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 180 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 239 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++ +R+ +VPIN+KY +E + + Y G SNA R+T EYVML INDS +A L Sbjct: 240 APNDTIRDEIVPINKKYNIETFLASVSRYIGKSNANQGRVTIEYVMLDHINDSTDNAHEL 299 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AAC Sbjct: 300 AALLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAAC 359 Query: 363 GQLKSLS-KRIPKVPRQEMQITG 384 GQL R + +++M Sbjct: 360 GQLAGDVIDRTKRTLKKKMAGEA 382 >gi|308389428|gb|ADO31748.1| hypothetical protein NMBB_1442 [Neisseria meningitidis alpha710] Length = 364 Score = 461 bits (1186), Expect = e-128, Method: Composition-based stats. Identities = 158/377 (41%), Positives = 229/377 (60%), Gaps = 20/377 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + L +G R Q+ +W++ G ++F M+D+++ +RH LN Sbjct: 2 KTNLLNYDLQGLTRHFADMG----EKPFRAKQVMRWMHQSGAQNFDEMTDLAKSLRHKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I P+++ + S DGTRKWLL +G +ETV+IPE RGTLC+SSQVGC+ Sbjct: 58 EQAGIEIPKLMMSQKSSDGTRKWLL-----DVGTGNGVETVFIPESDRGTLCISSQVGCA 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC TG Q RNLT+ EI+ Q+ A +G V P R ISN+VMM Sbjct: 113 LECTFCSTGRQGFNRNLTSAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEP+ NFDNV +LSI D G S+RR+T+STSG VP + R+ + + V LA+SLHA Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHA 221 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++RN +VP+N+KYPL+ L+ AC+ Y + ITFEYVML GIND + A LI++ Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + +P K NLIPFNP+P Y S ++I F + ++++G+ +R RG DI AACGQL Sbjct: 282 VTDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341 Query: 366 KSLSKRIPKVPRQEMQI 382 + + ++ QI Sbjct: 342 AGQVQDKTRRQQKWQQI 358 >gi|238797961|ref|ZP_04641451.1| Ribosomal RNA large subunit methyltransferase N [Yersinia mollaretii ATCC 43969] gi|238718166|gb|EEQ09992.1| Ribosomal RNA large subunit methyltransferase N [Yersinia mollaretii ATCC 43969] Length = 398 Score = 460 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 160/378 (42%), Positives = 220/378 (58%), Gaps = 23/378 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E K+G R Q+ KW+Y DF+ M+DI++ +R L Sbjct: 31 KINLLDLNRQQMREFFAKMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKVLRAKLQ 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+ +E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC+ Sbjct: 87 RVAEIRAPEVAEEQRSTDGTIKWAIKVGD------QQVETVYIPEADRATLCVSSQVGCA 140 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + + R I+N+VMM Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------SLKSTGTRPITNVVMM 190 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 191 GMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPRDALNLI 303 ++D+R+ +VPINRKY +E + A R Y S N R+T EYVML INDS A L Sbjct: 251 PTDDIRDEIVPINRKYNIETFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSTEQAHQLA 310 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AACG Sbjct: 311 ECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMDYGFTTIVRKTRGDDIDAACG 370 Query: 364 QLKSLS-KRIPKVPRQEM 380 QL R + +++M Sbjct: 371 QLAGEVIDRTKRTLKKKM 388 >gi|261365781|ref|ZP_05978664.1| radical SAM enzyme, Cfr family [Neisseria mucosa ATCC 25996] gi|288565687|gb|EFC87247.1| radical SAM enzyme, Cfr family [Neisseria mucosa ATCC 25996] Length = 364 Score = 460 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 159/377 (42%), Positives = 229/377 (60%), Gaps = 20/377 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ L ++G R Q+ +WI+ G + F M+D+++ +R LN Sbjct: 2 KTNLLNYDLNGLTHHFAEMG----EKPFRAKQVMRWIHQAGAQSFDEMTDLAKSLRLKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + S+ P+++ + S DGTRKWLL +G +ETV+IPE RGTLC+SSQVGC+ Sbjct: 58 EQASVDVPKLMMAQESSDGTRKWLL-----DVGTGNGVETVFIPEAERGTLCISSQVGCA 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC TG Q RNLTA EI+ Q+ A +G V P R ISN+VMM Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEP+ NFDNV +LSI D G S+RR+T+STSG VP + R+ + + V LA+SLHA Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDAMPVALAVSLHA 221 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++R+ +VP+N+KYPL+ L+ AC+ Y + ITFEYVML GIND + A LI++ Sbjct: 222 SNDEVRDQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +K +P K NLIPFNP+P Y S ++I F + ++++G+ +R RG DI AACGQL Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYERSTNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341 Query: 366 KSLSKRIPKVPRQEMQI 382 + + ++ QI Sbjct: 342 AGQVQDKTRRQQKWQQI 358 >gi|254418192|ref|ZP_05031916.1| radical SAM enzyme, Cfr family [Brevundimonas sp. BAL3] gi|196184369|gb|EDX79345.1| radical SAM enzyme, Cfr family [Brevundimonas sp. BAL3] Length = 390 Score = 460 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 199/375 (53%), Positives = 269/375 (71%), Gaps = 16/375 (4%) Query: 7 ESLIGMMREELEEALLKIGI-PQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 +L G+ R L +AL+ + P +MR SQ+W WI+ G+ +F MS+++++++ L Sbjct: 20 VNLSGLTRAGLRQALIDANVCPPEKAKMRASQVWSWIHHYGVTEFSAMSNVAKDMQAKLA 79 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGC 124 +HF++ PEIV+ ++S DGTRKWL+R +EIETVYIP+ R G LCVSSQVGC Sbjct: 80 EHFTLARPEIVERQVSKDGTRKWLIRTAP-----GIEIETVYIPDVGRAGALCVSSQVGC 134 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC+TGTQKLVRNLTA EI+ QV +AR L ++P P R++SNIV Sbjct: 135 TLNCTFCHTGTQKLVRNLTAAEIVAQVQVARDDLEEWPS---------PKEDRRLSNIVF 185 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N D+V ++ I SD+ G++ S+RRIT+STSG P + +G MLAISLH Sbjct: 186 MGMGEPLYNLDHVADAIDIISDNEGIALSRRRITVSTSGVAPQLDALGTRTAAMLAISLH 245 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++ LR++LVP+N+KYPL+ L+ R YPGLSNARR+TFEYVMLKG+NDSP +A L+K Sbjct: 246 ATNDALRDVLVPLNKKYPLDQLMAGIRAYPGLSNARRVTFEYVMLKGVNDSPEEARALLK 305 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +++GIPAKINLIPFNPWPG EY CSD K I F+ + ++GY+SPIRTPRG DILAACGQ Sbjct: 306 LIEGIPAKINLIPFNPWPGVEYECSDWKTIERFAAILNKAGYASPIRTPRGRDILAACGQ 365 Query: 365 LKSLSKRIPKVPRQE 379 LKS S+++ ++ Sbjct: 366 LKSESEKVRASALRK 380 >gi|291618414|ref|YP_003521156.1| YfgB [Pantoea ananatis LMG 20103] gi|291153444|gb|ADD78028.1| YfgB [Pantoea ananatis LMG 20103] gi|327394806|dbj|BAK12228.1| radical SAM Cfr family YfgB [Pantoea ananatis AJ13355] Length = 389 Score = 460 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 162/383 (42%), Positives = 223/383 (58%), Gaps = 23/383 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+++ E + +G R Q+ KWIY DF+ M+DI++++R+ L Sbjct: 21 QKINLLDLNRQQMREFFVSLG----EKPFRADQVMKWIYHYCCDDFEQMTDINKKLRNRL 76 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PE+ +E S DGT KW +R + +ETVYIPE R TLCVSSQVGC Sbjct: 77 MELTEIRAPEVAEEMRSTDGTIKWAIRVGDQL------VETVYIPEGDRATLCVSSQVGC 130 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNL EI+ QV A ++G + R I+N+VM Sbjct: 131 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVM 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 181 MGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 240 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++ LR+ +VPIN+KY +E + A + Y G SNA R+T EYV+L +NDS DA L Sbjct: 241 APNDKLRDDIVPINKKYNIETFLAAVKRYIGKSNANQGRVTIEYVLLDHVNDSTDDAHEL 300 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AAC Sbjct: 301 AALLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTTIVRKTRGDDIDAAC 360 Query: 363 GQLKSLS-KRIPKVPRQEMQITG 384 GQL R + R++M Sbjct: 361 GQLAGEVIDRTKRTLRKKMAGEA 383 >gi|261345336|ref|ZP_05972980.1| radical SAM enzyme, Cfr family [Providencia rustigianii DSM 4541] gi|282566377|gb|EFB71912.1| radical SAM enzyme, Cfr family [Providencia rustigianii DSM 4541] Length = 393 Score = 460 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 158/379 (41%), Positives = 221/379 (58%), Gaps = 23/379 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+++ E ++G R Q+ KWIY DF M+DI++ +R L Sbjct: 25 QKINLLDLNRKQMREFFAELG----EKPFRADQVMKWIYHYCYDDFDQMTDINKVLRTKL 80 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PE+ DE+ S DGT KW ++ + +ETVYIPE R TLCVSSQVGC Sbjct: 81 KEVAEIRAPEVADEQRSSDGTIKWAIKVGDQL------VETVYIPEADRATLCVSSQVGC 134 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNL EI+ QV A ++G + + R I+N+VM Sbjct: 135 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------SLKSTGRRPITNVVM 184 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D G SKRR+T+STSG VP + ++G+ I V LAISLH Sbjct: 185 MGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTISTSGVVPALDKLGDMIDVALAISLH 244 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++D+R+ +VPIN+KY +E +++ Y SNA R+T EYVML INDS A L Sbjct: 245 APTDDVRDEIVPINKKYNIETFLNSVNRYLTKSNANAGRVTVEYVMLDHINDSVEQAHQL 304 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + LK P+KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AAC Sbjct: 305 AECLKNTPSKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAAC 364 Query: 363 GQLKSLS-KRIPKVPRQEM 380 GQL R + ++ + Sbjct: 365 GQLAGDVIDRTKRTLKKRL 383 >gi|238785318|ref|ZP_04629307.1| Ribosomal RNA large subunit methyltransferase N [Yersinia bercovieri ATCC 43970] gi|238713771|gb|EEQ05794.1| Ribosomal RNA large subunit methyltransferase N [Yersinia bercovieri ATCC 43970] Length = 398 Score = 460 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 160/378 (42%), Positives = 217/378 (57%), Gaps = 23/378 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E ++G R Q+ KW+Y DF+ M+DI++ +R L Sbjct: 31 KINLLDLNRQQMREFFAQMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKALRAKLQ 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+ E+ S DGT KW + ++ETVYIPE R TLCVSSQVGC+ Sbjct: 87 RVAEIRAPEVAQEQRSADGTIKWAITVGD------QQVETVYIPEADRATLCVSSQVGCA 140 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + + R I+N+VMM Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------SLKSTGTRPITNVVMM 190 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 191 GMGEPLLNLNNVVPAMDIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPRDALNLI 303 ++D+RN +VPINRKY +E + A R Y S N R+T EYVML INDS A L Sbjct: 251 PTDDIRNEIVPINRKYNIETFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSVEQAHQLA 310 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AACG Sbjct: 311 ECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 370 Query: 364 QLKSLS-KRIPKVPRQEM 380 QL R + ++ M Sbjct: 371 QLAGEVIDRTKRTLKKRM 388 >gi|284006771|emb|CBA72033.1| radical SAM superfamily protein [Arsenophonus nasoniae] Length = 389 Score = 460 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 161/378 (42%), Positives = 220/378 (58%), Gaps = 23/378 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ M R+++ + G R Q+ KWIY DF M+DI++ +R+ L Sbjct: 22 KVNLLDMDRKQMRQFFSDTG----EKPFRADQVMKWIYHHCYDDFDLMTDINKVLRNKLK 77 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 Q I PEI E+ S DGT KW + G ++ETVYIPE R TLCVSSQVGC+ Sbjct: 78 QAAEIRAPEIAQEQRSTDGTIKWAI------TVGEQQVETVYIPEDDRATLCVSSQVGCA 131 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + S R I+N+VMM Sbjct: 132 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKVIG----------SLKSSGRRPITNVVMM 181 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 182 GMGEPLLNLNNVIPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 241 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+KY +E + + R Y SNA R+T EYVML G+NDS A L Sbjct: 242 PTDEIRDEIVPINKKYNIETFLASVRRYLTKSNANQGRVTVEYVMLNGVNDSIEHAHQLA 301 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 + LK P+KINLIP+NP+PG Y S I F++ + + G+++ +R RG DI AACG Sbjct: 302 ECLKHTPSKINLIPWNPFPGAPYSRSSNSRIDRFAKVLMKYGFTTIVRKTRGDDIDAACG 361 Query: 364 QLKSLS-KRIPKVPRQEM 380 QL R + ++ + Sbjct: 362 QLAGDVIDRTKRTLKKRL 379 >gi|329115338|ref|ZP_08244092.1| Ribosomal RNA large subunit methyltransferase N [Acetobacter pomorum DM001] gi|326695317|gb|EGE47004.1| Ribosomal RNA large subunit methyltransferase N [Acetobacter pomorum DM001] Length = 408 Score = 460 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 189/370 (51%), Positives = 255/370 (68%), Gaps = 18/370 (4%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + L+G+ R+EL + L++IG RT Q+W WIY +G+ DF MS I++ ++ L Sbjct: 47 RRDLVGLSRDELTDILIEIG----EKPFRTKQLWHWIYHQGVTDFSRMSTIAKPLQQKLA 102 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK--SRGTLCVSSQVG 123 + F I PE + S D TRK+L RF E ETVYIP++ RG +C+SSQVG Sbjct: 103 ERFIIGRPEAATVQTSSDSTRKFLFRFRD-----GQEAETVYIPDRREDRGAVCISSQVG 157 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L+C+FC+TGTQKLVRNL A EI+ Q + AR G++P + R +S IV Sbjct: 158 CTLSCTFCHTGTQKLVRNLGAAEIVSQFMAARDSYGEWPSPKG-------ETPRLLSTIV 210 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 +MGMGEPL N++NV K++ I D G+ S+RRITLSTSG VP + R G+E+G+ LA+SL Sbjct: 211 LMGMGEPLYNYENVAKAMKIIMDGEGIGLSRRRITLSTSGVVPLMDRCGDELGINLAVSL 270 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HAV NDLR+ +VP+NRKYP+E ++ ACR YP SNARRITFEY+ML+G+NDS DA L+ Sbjct: 271 HAVRNDLRDEIVPLNRKYPIEEVLAACRRYPAASNARRITFEYIMLRGVNDSEADARELV 330 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +++ GIPAK+NLIPFNPWPG Y S ++ F+E + +G++SPIRTPRG DILAACG Sbjct: 331 RLISGIPAKVNLIPFNPWPGSAYKPSTREQQNRFAEIVMNAGFASPIRTPRGRDILAACG 390 Query: 364 QLKSLSKRIP 373 QLK+ S+R Sbjct: 391 QLKTASERAR 400 >gi|293610293|ref|ZP_06692594.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827525|gb|EFF85889.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325124474|gb|ADY83997.1| putative Fe-S-cluster redox enzyme [Acinetobacter calcoaceticus PHEA-2] Length = 411 Score = 460 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 169/388 (43%), Positives = 231/388 (59%), Gaps = 24/388 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K +L+GM R ELE+ IG + R Q+ KWI+ + DF M++IS ++R L Sbjct: 29 NKVNLLGMSRPELEKFFEDIG----EKKFRAGQVMKWIHQYFVTDFAEMTNISGKLRAKL 84 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGTLCVSS 120 Q I PE+V S DGTRKW+ R G +ETV IP + R TLC+SS Sbjct: 85 EQICEIKAPEVVHRHYSKDGTRKWVFRVGE---GAGSLVETVLIPAEDKTGLRKTLCISS 141 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC+L CSFC TG Q R+LT +EI+ Q+ +A + + E R ++ Sbjct: 142 QVGCALDCSFCSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPVAERE--------RSVT 193 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+D V S+ I D SKRR+TLSTSG VP I ++ ++I V LA Sbjct: 194 NVVMMGMGEPLLNYDAVLSSMQIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALA 253 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL----SNARRITFEYVMLKGINDSP 296 ISLHA +++LRN LVPIN+KYPL LI AC+ Y S + +T EYVML+G+ND P Sbjct: 254 ISLHAPNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESTRKHVTIEYVMLEGVNDQP 313 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 A +IK+LK +P+KINLIPFNP+P Y S + I++F + + +G+ IR RG Sbjct: 314 EHAQQMIKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGD 373 Query: 357 DILAACGQL-KSLSKRIPKVPRQEMQIT 383 DI AACGQL ++ R + + + ++T Sbjct: 374 DIDAACGQLVGQVADRTRRAEQWQKKVT 401 >gi|254670500|emb|CBA06240.1| conserved hypothetical protein [Neisseria meningitidis alpha153] gi|325128395|gb|EGC51278.1| radical SAM enzyme, Cfr family [Neisseria meningitidis N1568] Length = 364 Score = 460 bits (1184), Expect = e-127, Method: Composition-based stats. Identities = 159/377 (42%), Positives = 229/377 (60%), Gaps = 20/377 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + L +G R Q+ +W++ G ++F M+D+++ +RH LN Sbjct: 2 KTNLLNYDLQGLTRHFADMG----EKPFRAKQVMRWMHQSGAQNFNEMTDLAKSLRHKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I P+++ + S DGTRKWLL +G +ETV+IPE RGTLC+SSQVGC+ Sbjct: 58 EQAGIEIPKLMMSQESSDGTRKWLL-----DVGTGNGVETVFIPESDRGTLCISSQVGCA 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC TG Q RNLTA EI+ Q+ A +G V P R ISN+VMM Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEP+ NFDNV +LSI D G S+RR+T+STSG VP + R+ + + V LA+SLHA Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHA 221 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++RN +VP+N+KYPL+ L+ AC+ Y + ITFEYVML GIND + A LI++ Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + +P K NLIPFNP+P Y S ++I F + ++++G+ +R RG DI AACGQL Sbjct: 282 VTDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341 Query: 366 KSLSKRIPKVPRQEMQI 382 + + ++ QI Sbjct: 342 AGQVQDKTRRQQKWQQI 358 >gi|326794512|ref|YP_004312332.1| ribosomal RNA large subunit methyltransferase N [Marinomonas mediterranea MMB-1] gi|326545276|gb|ADZ90496.1| Ribosomal RNA large subunit methyltransferase N [Marinomonas mediterranea MMB-1] Length = 373 Score = 460 bits (1184), Expect = e-127, Method: Composition-based stats. Identities = 162/383 (42%), Positives = 224/383 (58%), Gaps = 18/383 (4%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M+ +K +L+G+ E+L E IG + R +Q+ KWI+ +G F+ M+D+S+++ Sbjct: 1 MSATQKVNLLGLSPEKLVEFFESIG----EKKFRATQVMKWIHQKGAESFEEMTDVSKKL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L I PEIV++ IS DGTRKW++R +ETV IP+ R TLCVSS Sbjct: 57 RAKLEGICEIRAPEIVEQNISTDGTRKWIIRTEGGMND---CVETVLIPDGDRATLCVSS 113 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGCSL CSFC TG Q RNLT EI+ Q+ +A G P+ R+++ Sbjct: 114 QVGCSLDCSFCSTGKQGFNRNLTPAEIIGQLWIAIKSFGPMD----------PNGPRRVT 163 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL NF+ V ++ + SKRR+TLSTSG VP I + + V LA Sbjct: 164 NVVMMGMGEPLMNFEPVVDAMILMMHDNAYGLSKRRVTLSTSGVVPKIYELVKRTDVSLA 223 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDA 299 ISLHA +N LR+ LVPINRKYP+E L++AC+HY L + R IT EY M+ G+ND + A Sbjct: 224 ISLHAPNNPLRDELVPINRKYPIEELLEACQHYLDNLPDKRHITIEYTMMAGVNDQEQHA 283 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L +LK + K+NLIPFNP+P Y F + + GY+ +RT RG DI Sbjct: 284 RELAHLLKDLECKVNLIPFNPFPHSGYEKPSNNQTRRFQKILADDGYTVTVRTTRGDDID 343 Query: 360 AACGQLKSLSKRIPKVPRQEMQI 382 AACGQL + ++ +++ Sbjct: 344 AACGQLVGDFHDKTRRSQKYIEL 366 >gi|59801026|ref|YP_207738.1| hypothetical protein NGO0596 [Neisseria gonorrhoeae FA 1090] gi|194098883|ref|YP_002001947.1| hypothetical protein NGK_1322 [Neisseria gonorrhoeae NCCP11945] gi|239999168|ref|ZP_04719092.1| hypothetical protein Ngon3_06775 [Neisseria gonorrhoeae 35/02] gi|240013924|ref|ZP_04720837.1| hypothetical protein NgonD_04618 [Neisseria gonorrhoeae DGI18] gi|240016366|ref|ZP_04722906.1| hypothetical protein NgonFA_04214 [Neisseria gonorrhoeae FA6140] gi|240080485|ref|ZP_04725028.1| hypothetical protein NgonF_04112 [Neisseria gonorrhoeae FA19] gi|240113147|ref|ZP_04727637.1| hypothetical protein NgonM_06171 [Neisseria gonorrhoeae MS11] gi|240118201|ref|ZP_04732263.1| hypothetical protein NgonPID_07036 [Neisseria gonorrhoeae PID1] gi|240121493|ref|ZP_04734455.1| hypothetical protein NgonPI_06948 [Neisseria gonorrhoeae PID24-1] gi|240123749|ref|ZP_04736705.1| hypothetical protein NgonP_07399 [Neisseria gonorrhoeae PID332] gi|240125940|ref|ZP_04738826.1| hypothetical protein NgonSK_06937 [Neisseria gonorrhoeae SK-92-679] gi|240128452|ref|ZP_04741113.1| hypothetical protein NgonS_07451 [Neisseria gonorrhoeae SK-93-1035] gi|254493940|ref|ZP_05107111.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268594999|ref|ZP_06129166.1| ribosomal RNA large subunit methyltransferase N [Neisseria gonorrhoeae 35/02] gi|268596621|ref|ZP_06130788.1| ribosomal RNA large subunit methyltransferase N [Neisseria gonorrhoeae FA19] gi|268599227|ref|ZP_06133394.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268603913|ref|ZP_06138080.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268682376|ref|ZP_06149238.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268684534|ref|ZP_06151396.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|268686844|ref|ZP_06153706.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|293398890|ref|ZP_06643055.1| cfr family radical SAM enzyme [Neisseria gonorrhoeae F62] gi|75356171|sp|Q5F911|RLMN_NEIG1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807190|sp|B4RMG2|RLMN_NEIG2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|59717921|gb|AAW89326.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090] gi|193934173|gb|ACF29997.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945] gi|226512980|gb|EEH62325.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268548388|gb|EEZ43806.1| ribosomal RNA large subunit methyltransferase N [Neisseria gonorrhoeae 35/02] gi|268550409|gb|EEZ45428.1| ribosomal RNA large subunit methyltransferase N [Neisseria gonorrhoeae FA19] gi|268583358|gb|EEZ48034.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268588044|gb|EEZ52720.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268622660|gb|EEZ55060.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268624818|gb|EEZ57218.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|268627128|gb|EEZ59528.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|291610304|gb|EFF39414.1| cfr family radical SAM enzyme [Neisseria gonorrhoeae F62] gi|317164455|gb|ADV07996.1| hypothetical protein NGTW08_1028 [Neisseria gonorrhoeae TCDC-NG08107] Length = 364 Score = 460 bits (1184), Expect = e-127, Method: Composition-based stats. Identities = 159/377 (42%), Positives = 230/377 (61%), Gaps = 20/377 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + L +G R Q+ +W++ G ++F M+D+++ +RH LN Sbjct: 2 KTNLLNYDLQGLTRHFADMG----EKPFRAKQVMRWMHQSGAQNFDEMTDLAKSLRHKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + SI P+++ + S DGTRKWLL +G +ETV+IPE RGTLC+SSQVGC+ Sbjct: 58 EQASIEIPKLMMSQESSDGTRKWLL-----DVGTGNGVETVFIPESDRGTLCISSQVGCA 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC TG Q RNLTA EI+ Q+ A +G V P R ISN+VMM Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEP+ NFDNV +LSI D G S+RR+T+STSG VP + R+ + + V LA+SLHA Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHA 221 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++RN +VP+N+KYPL+ L+ AC+ Y + ITFEYVML G+ND + A LI++ Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGVNDKAQHAYELIEL 281 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +K +P K NLIPFNP+P Y S ++I F + ++++ + +R RG DI AACGQL Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYERSSNENIRIFRDILQQAEFVVTVRKTRGDDIDAACGQL 341 Query: 366 KSLSKRIPKVPRQEMQI 382 + + ++ QI Sbjct: 342 AGQVQDKTRRQQKWQQI 358 >gi|218768330|ref|YP_002342842.1| hypothetical protein NMA1522 [Neisseria meningitidis Z2491] gi|205829822|sp|A1ISB3|RLMN_NEIMA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|121052338|emb|CAM08669.1| conserved hypothetical protein [Neisseria meningitidis Z2491] gi|261392411|emb|CAX49953.1| conserved hypothetical protein [Neisseria meningitidis 8013] gi|319410575|emb|CBY90944.1| conserved hypothetical protein [Neisseria meningitidis WUE 2594] gi|325134450|gb|EGC57095.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M13399] Length = 364 Score = 460 bits (1184), Expect = e-127, Method: Composition-based stats. Identities = 159/377 (42%), Positives = 229/377 (60%), Gaps = 20/377 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + L +G R Q+ +W++ G ++F M+D+++ +RH LN Sbjct: 2 KTNLLNYDLQGLTRHFADMG----EKPFRAKQVMRWMHQSGAQNFNEMTDLAKSLRHKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I P+++ + S DGTRKWLL +G +ETV+IPE RGTLC+SSQVGC+ Sbjct: 58 EQAGIEIPKLMMSQKSSDGTRKWLL-----DVGTGNGVETVFIPESDRGTLCISSQVGCA 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC TG Q RNLTA EI+ Q+ A +G V P R ISN+VMM Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEP+ NFDNV +LSI D G S+RR+T+STSG VP + R+ + + V LA+SLHA Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHA 221 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++RN +VP+N+KYPL+ L+ AC+ Y + ITFEYVML GIND + A LI++ Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + +P K NLIPFNP+P Y S ++I F + ++++G+ +R RG DI AACGQL Sbjct: 282 VTDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341 Query: 366 KSLSKRIPKVPRQEMQI 382 + + ++ QI Sbjct: 342 AGQVQDKTRRQQKWQQI 358 >gi|329897039|ref|ZP_08271811.1| Radical SAM superfamily protein [gamma proteobacterium IMCC3088] gi|328921479|gb|EGG28865.1| Radical SAM superfamily protein [gamma proteobacterium IMCC3088] Length = 383 Score = 460 bits (1184), Expect = e-127, Method: Composition-based stats. Identities = 155/382 (40%), Positives = 219/382 (57%), Gaps = 22/382 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + +L+G+ R ++E + G R Q+ KWI+ G+ DF+ M+++S+ +R L+ Sbjct: 13 RVNLLGLTRAQMEAFFAECG----EKSFRAQQVMKWIHHHGVCDFEAMTNLSKSLRAKLS 68 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + PE+V S DGTRKWL+R + +E+V IP+ R TLCVSSQVGCS Sbjct: 69 ERACVRPPEVVSRHDSADGTRKWLVRSIEGGL-----VESVLIPDGDRATLCVSSQVGCS 123 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q R+LTA +I+ QV LA F P R ++N+VMM Sbjct: 124 LDCSFCSTGKQGFERDLTASDIIGQVWLAIDSFDAF----------QPGKDRVVTNVVMM 173 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFD V ++ + D + SKRR+TLSTSG VP + ++ E V LA+SLHA Sbjct: 174 GMGEPLLNFDAVVSAMDLMMDDLAYGLSKRRVTLSTSGVVPALDKLAEVSCVSLAVSLHA 233 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNLI 303 ++ LRN LVPIN+KYP+ L+ + + Y N R+ +T EY ++ G+ND P A L Sbjct: 234 PNDALRNQLVPINKKYPIAELLASAQRYLDAQNDRKRVVTIEYTLIAGVNDQPEHARELA 293 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LK P KINLIPFN +PG Y + F + + +G+ +RT RG DI AACG Sbjct: 294 VLLKNFPCKINLIPFNAFPGSSYQRPSGNAVSRFWQVLIDAGFIVTVRTTRGDDISAACG 353 Query: 364 QL-KSLSKRIPKVPRQEMQITG 384 QL + R + R + + G Sbjct: 354 QLVGDVVDRTKRSQRHKAALEG 375 >gi|225075197|ref|ZP_03718396.1| hypothetical protein NEIFLAOT_00197 [Neisseria flavescens NRL30031/H210] gi|224953372|gb|EEG34581.1| hypothetical protein NEIFLAOT_00197 [Neisseria flavescens NRL30031/H210] Length = 398 Score = 460 bits (1184), Expect = e-127, Method: Composition-based stats. Identities = 158/377 (41%), Positives = 231/377 (61%), Gaps = 20/377 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ L + ++G R Q+ +W++ G ++F+ M+D+++ +R LN Sbjct: 38 KTNLLNYDLNGLTQHFAEMG----EKPFRAKQVMRWMHQAGAQNFEEMTDLAKSLRAKLN 93 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + +I P+++ + S DGTRKWLL +G +ETV+IPE RGTLC+SSQVGC+ Sbjct: 94 EQATIEVPKLMMAQESTDGTRKWLL-----DVGTGNGVETVFIPEAERGTLCISSQVGCA 148 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC TG Q RNLTA EI+ Q+ A +G V P R ISN+VMM Sbjct: 149 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 197 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEP+ NFDNV +LSI D G S+RR+T+STSG VP + R+ + + V LA+SLHA Sbjct: 198 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDAMPVALAVSLHA 257 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++R+ +VP+N+KYPL+ L+ AC+ Y + ITFEYVML GIND + A LI++ Sbjct: 258 SNDEVRDQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 317 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +K +P K NLIPFNP+P Y S ++I F + +++ G+ +R RG DI AACGQL Sbjct: 318 VKDVPCKFNLIPFNPFPNSGYERSTNENIRVFRDILQQVGFVVTVRKTRGDDIDAACGQL 377 Query: 366 KSLSKRIPKVPRQEMQI 382 + + ++ QI Sbjct: 378 AGQVQDKTRRQQKWQQI 394 >gi|325204309|gb|ADY99762.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M01-240355] Length = 364 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 158/377 (41%), Positives = 229/377 (60%), Gaps = 20/377 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + L +G R Q+ +W++ G ++F M+D+++ +RH LN Sbjct: 2 KTNLLNYDLQGLTRHFADMG----EKPFRAKQVMRWMHQSGAQNFNEMTDLAKSLRHKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I P+++ + S DGTRKWLL +G +ETV+IPE RGTLC+SSQVGC+ Sbjct: 58 EQAGIEIPKLMMSQKSSDGTRKWLL-----DVGTGNGVETVFIPESDRGTLCISSQVGCA 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC TG Q RNLT+ EI+ Q+ A +G V P R ISN+VMM Sbjct: 113 LECTFCSTGRQGFNRNLTSAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEP+ NFDNV +LSI D G S+RR+T+STSG VP + R+ + + V LA+SLHA Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHA 221 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++RN +VP+N+KYPL+ L+ AC+ Y + ITFEYVML GIND + A LI++ Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + +P K NLIPFNP+P Y S ++I F + ++++G+ +R RG DI AACGQL Sbjct: 282 VTDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341 Query: 366 KSLSKRIPKVPRQEMQI 382 + + ++ QI Sbjct: 342 AGQVQDKTRRQQKWQQI 358 >gi|299771620|ref|YP_003733646.1| UPF0063 protein yfgB [Acinetobacter sp. DR1] gi|298701708|gb|ADI92273.1| UPF0063 protein yfgB [Acinetobacter sp. DR1] Length = 411 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 170/388 (43%), Positives = 231/388 (59%), Gaps = 24/388 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K +L+GM R ELE+ IG + R Q+ KWI+ I DF M++IS ++R L Sbjct: 29 NKVNLLGMSRTELEKFFEDIG----EKKFRAGQVMKWIHQYFITDFAEMTNISGKLRAKL 84 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGTLCVSS 120 Q I PE+V S DGTRKW+ R G +ETV IP + R TLC+SS Sbjct: 85 EQICEIKAPEVVHRHYSKDGTRKWVFRVGD---GAGSLVETVLIPAEDKTGLRKTLCISS 141 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC+L CSFC TG Q R+LT +EI+ Q+ +A + + E R ++ Sbjct: 142 QVGCALDCSFCSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPVAERE--------RSVT 193 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+D V S+ I D SKRR+TLSTSG VP I ++ ++I V LA Sbjct: 194 NVVMMGMGEPLLNYDAVLSSMQIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALA 253 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL----SNARRITFEYVMLKGINDSP 296 ISLHA +++LRN LVPIN+KYPL LI AC+ Y S + +T EYVML+G+ND P Sbjct: 254 ISLHAPNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESTRKHVTIEYVMLEGVNDQP 313 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 A +IK+LK +P+KINLIPFNP+P Y S + I++F + + +G+ IR RG Sbjct: 314 EHAQQMIKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGD 373 Query: 357 DILAACGQL-KSLSKRIPKVPRQEMQIT 383 DI AACGQL ++ R + + + ++T Sbjct: 374 DIDAACGQLVGQVADRTRRAEQWQKKVT 401 >gi|329297584|ref|ZP_08254920.1| ribosomal RNA large subunit methyltransferase N [Plautia stali symbiont] Length = 376 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 161/383 (42%), Positives = 220/383 (57%), Gaps = 23/383 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+++ E +++G R Q+ KW+Y DF+ M+DI++ +R L Sbjct: 8 EKINLLDLNRQQMREFFVEMG----EKPFRADQVMKWMYHYCCDDFEQMTDINKVLRGKL 63 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q I PE+ +E S DGT KW +R + +ETVYIPE R TLCVSSQVGC Sbjct: 64 MQRAEIRAPEVAEEMRSSDGTIKWAIRVGDQL------VETVYIPEADRATLCVSSQVGC 117 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNL EI+ QV A ++G + R I+N+VM Sbjct: 118 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AAKVTGQRPITNVVM 167 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 168 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 227 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++ +R+ +VPIN+KY +E + A + Y G SNA R+T EYVML +NDS A L Sbjct: 228 APNDTIRDDIVPINKKYNIEAFLAAVKRYIGKSNANQGRVTIEYVMLDHVNDSTEHAHEL 287 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AAC Sbjct: 288 AALLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAAC 347 Query: 363 GQLKSLS-KRIPKVPRQEMQITG 384 GQL R + R++M Sbjct: 348 GQLAGDVIDRTKRTLRKKMAGEA 370 >gi|312962908|ref|ZP_07777395.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas fluorescens WH6] gi|311282935|gb|EFQ61529.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas fluorescens WH6] Length = 382 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 169/374 (45%), Positives = 227/374 (60%), Gaps = 21/374 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ + E+E+ IG R R Q+ KWI+ GI DF M+++S+ +R L Sbjct: 7 KTNLLGLTQPEMEKFFDSIG----EKRFRAGQVMKWIHHFGIDDFDAMTNVSKALRDKLK 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 63 TIAEVRGPEVVSEDISSDGTRKWVVR-----VASGSCVETVYIPQGKRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV +A G P D R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVISAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304 ++ LRN LVPIN+KYPL+ML+++C+ Y +R+ T EY +LK IND A+ +I+ Sbjct: 228 PNDALRNQLVPINKKYPLKMLLESCQRYMATLGEKRVLTIEYTLLKDINDKVEHAIEMIE 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK P KINLIPFNP+P Y I F + + ++GY+ +RT RG DI AACGQ Sbjct: 288 LLKNTPCKINLIPFNPFPHSGYERPSNNAIRRFQDQLHQAGYNVTVRTTRGEDIDAACGQ 347 Query: 365 L-KSLSKRIPKVPR 377 L + R + R Sbjct: 348 LVGQVMDRTRRSER 361 >gi|317049139|ref|YP_004116787.1| radical SAM enzyme, Cfr family [Pantoea sp. At-9b] gi|316950756|gb|ADU70231.1| radical SAM enzyme, Cfr family [Pantoea sp. At-9b] Length = 389 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 161/383 (42%), Positives = 223/383 (58%), Gaps = 23/383 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+++ E + +G R Q+ KW+Y DF+ M+DI++ +R L Sbjct: 21 EKINLLDLNRQQMREFFVSLG----EKPFRADQVMKWMYHYCCDDFEQMTDINKVLRGKL 76 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q I PE+ +EK S DGT KW +R + +ETVYIPE R TLCVSSQVGC Sbjct: 77 MQLTEIRAPEVAEEKRSSDGTIKWAIRVGDQL------VETVYIPEDDRATLCVSSQVGC 130 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNL EI+ QV A ++G + R I+N+VM Sbjct: 131 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AAKVTGQRPITNVVM 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 181 MGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 240 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++ LR+ +VPIN+KY +E + A + Y SNA R+T EYV+L +NDS DA L Sbjct: 241 APNDKLRDDIVPINKKYNIETFLAAVKRYLAKSNANQGRVTIEYVLLDHVNDSTDDAHQL 300 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P+KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AAC Sbjct: 301 AELLKDTPSKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 360 Query: 363 GQLKSLS-KRIPKVPRQEMQITG 384 GQL R + R++M Sbjct: 361 GQLAGDVIDRTKRTMRKKMAGEA 383 >gi|188533171|ref|YP_001906968.1| hypothetical protein ETA_10250 [Erwinia tasmaniensis Et1/99] gi|254807181|sp|B2VE98|RLMN_ERWT9 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|188028213|emb|CAO96071.1| Conserved hypothetical protein YfgB [Erwinia tasmaniensis Et1/99] Length = 389 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 161/383 (42%), Positives = 219/383 (57%), Gaps = 23/383 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+++ E +G R Q+ KWIY DF M+DI++ R+ L Sbjct: 21 EKINLLDLNRQQMREFFAGLG----EKPFRADQVMKWIYHYCCDDFDEMTDINKVFRNRL 76 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PE+ +E+ S DGT KW ++ G ++ETVYIPEK R TLCVSSQVGC Sbjct: 77 KELAEIRAPEVAEEQRSSDGTIKWAIQV------GGQQVETVYIPEKDRATLCVSSQVGC 130 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNL EI+ QV A ++G R I+N+VM Sbjct: 131 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------ATKVIGQRPITNVVM 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 181 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 240 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++ +R+ +VPIN+KY +E + + Y G SNA R+T EYVML INDS +A L Sbjct: 241 APNDTIRDEIVPINKKYNIETFLASVSRYIGKSNANQGRVTIEYVMLDHINDSTDNAHEL 300 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AAC Sbjct: 301 AALLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAAC 360 Query: 363 GQLKSLS-KRIPKVPRQEMQITG 384 GQL R + +++M Sbjct: 361 GQLAGDVIDRTKRTLKKKMAGEA 383 >gi|330936987|gb|EGH41085.1| hypothetical protein PSYPI_01075 [Pseudomonas syringae pv. pisi str. 1704B] Length = 382 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 167/374 (44%), Positives = 227/374 (60%), Gaps = 21/374 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ ++E+E+ IG R R Q+ KWI+ G+ DF M+++S+ + L Sbjct: 7 KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALSEKLK 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 63 ACAEVRGPEVVSEDISSDGTRKWVVRVES-----GSCVETVYIPQGKRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV +A G P D R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304 ++ LRN LVP+N+KYPL++L+++CR Y +R+ T EY MLK IND A+ +I+ Sbjct: 228 PNDALRNQLVPLNKKYPLKVLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIE 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK P KINLIPFNP+P Y I F + + ++GY+ +RT RG DI AACGQ Sbjct: 288 LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQ 347 Query: 365 L-KSLSKRIPKVPR 377 L + R + R Sbjct: 348 LVGQVMDRTRRSER 361 >gi|254464850|ref|ZP_05078261.1| radical SAM enzyme, Cfr family [Rhodobacterales bacterium Y4I] gi|206685758|gb|EDZ46240.1| radical SAM enzyme, Cfr family [Rhodobacterales bacterium Y4I] Length = 413 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 191/363 (52%), Positives = 253/363 (69%), Gaps = 13/363 (3%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ R+ + E L++ G P++ +MR QIW+WIY G RDF M+++++ R L Sbjct: 23 KINLVGLTRDRMREVLMEHGTPEKQAKMRVGQIWQWIYQWGKRDFAEMTNLAKAYRAQLA 82 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + F I PE+V +++S DGTRK+L+R I G E+E VYIPE+ RGTLC+SSQVGC+ Sbjct: 83 ETFEIRIPEVVSKQVSTDGTRKYLVR-----IAGGHEVEVVYIPEEDRGTLCISSQVGCT 137 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLT EI+ QV++AR L ++P R +SNIV+M Sbjct: 138 LTCSFCHTGTQKLVRNLTPAEIVGQVMMARDDLEEWPVP-----GAPKEETRLLSNIVLM 192 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV+ ++ IA D G+S S+RRITLSTSG VP IAR +EIG +LAIS HA Sbjct: 193 GMGEPLYNFDNVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAQEIGCLLAISFHA 252 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +N+ R++LVPIN+++ ++ L+ A YP SN+ RITFEYVML G+ND+ DA LI Sbjct: 253 TTNETRDVLVPINKRWNIDELLQALADYPKASNSERITFEYVMLDGVNDTDEDAHRLIDH 312 Query: 306 LK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +K IPAKINLIPFN WPG Y S I F+ I ++GY+SPIR RG DI+AACG Sbjct: 313 IKRYNIPAKINLIPFNEWPGSPYKRSSNNRIRAFANIIYQAGYASPIRKTRGDDIMAACG 372 Query: 364 QLK 366 L+ Sbjct: 373 -LR 374 >gi|308187773|ref|YP_003931904.1| UPF0063 protein yfgB [Pantoea vagans C9-1] gi|308058283|gb|ADO10455.1| UPF0063 protein yfgB [Pantoea vagans C9-1] Length = 389 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 163/383 (42%), Positives = 223/383 (58%), Gaps = 23/383 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+++ E L +G R Q+ KWIY DF+ M+DI++++R+ L Sbjct: 21 QKINLLDLNRQQMREFFLSLG----EKPFRADQVMKWIYHYCCDDFEQMTDINKKLRNRL 76 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PE+ +E S DGT KW +R + +ETVYIPE R TLCVSSQVGC Sbjct: 77 MELTEIRAPEVAEEMRSTDGTIKWAIRVGDQL------VETVYIPEGDRATLCVSSQVGC 130 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNL EI+ QV A ++G + R I+N+VM Sbjct: 131 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKITGQRPITNVVM 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 181 MGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 240 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++ LR+ +VPIN+KY +E + A + Y G SNA R+T EYV+L +NDS DA L Sbjct: 241 APNDKLRDDIVPINKKYNIETFLAAVKRYIGKSNANQGRVTIEYVLLDHVNDSTDDAHEL 300 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AAC Sbjct: 301 AALLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTTIVRKTRGDDIDAAC 360 Query: 363 GQLKSLS-KRIPKVPRQEMQITG 384 GQL R + R++M Sbjct: 361 GQLAGEVIDRTKRTLRKKMAGEA 383 >gi|255067157|ref|ZP_05319012.1| radical SAM enzyme, Cfr family [Neisseria sicca ATCC 29256] gi|255048525|gb|EET43989.1| radical SAM enzyme, Cfr family [Neisseria sicca ATCC 29256] Length = 364 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 157/377 (41%), Positives = 229/377 (60%), Gaps = 20/377 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ L ++G R Q+ +WI+ G + F M+D+++ +R LN Sbjct: 2 KTNLLNYDLNGLTHHFAEMG----EKPFRAKQVMRWIHQAGAQSFDEMTDLAKSLRLKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + S+ P+++ + S DGTRKWLL +G +ETV+IPE RGTLC+SSQVGC+ Sbjct: 58 EQASVDVPKLMMAQESTDGTRKWLL-----DVGTGNGVETVFIPEAERGTLCISSQVGCA 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC TG Q RNLTA EI+ Q+ A +G V P R ISN+VMM Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEP+ NF+NV +LSI D G S+RR+T+STSG VP + R+ + + V LA+SLHA Sbjct: 162 GMGEPMANFENVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDAMPVALAVSLHA 221 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++R+ +VP+N+KYPL+ L+ AC+ Y + ITFEYVML G+ND + A LI++ Sbjct: 222 SNDEVRDQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGVNDKAQHARELIEL 281 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +K +P K NLIPFNP+P Y S ++I F + ++++G+ +R RG DI AACGQL Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYERSTNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341 Query: 366 KSLSKRIPKVPRQEMQI 382 + + ++ QI Sbjct: 342 AGQVQDKTRRQQKWQQI 358 >gi|262280923|ref|ZP_06058706.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter calcoaceticus RUH2202] gi|262257823|gb|EEY76558.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter calcoaceticus RUH2202] Length = 411 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 169/388 (43%), Positives = 232/388 (59%), Gaps = 24/388 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K +L+GM R ELE+ IG + R Q+ KW++ I DF M++IS ++R L Sbjct: 29 NKVNLLGMSRTELEKFFEDIG----EKKFRAGQVMKWMHQYFITDFAEMTNISGKLREKL 84 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGTLCVSS 120 Q I PE+V S DGTRKW+ R G +ETV IP + R TLC+SS Sbjct: 85 EQICEIKAPEVVHRHYSKDGTRKWVFRVGD---GAGSLVETVLIPAEDKTGLRKTLCISS 141 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC+L CSFC TG Q R+LT +EI+ Q+ +A + + E R ++ Sbjct: 142 QVGCALDCSFCSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPVAERE--------RSVT 193 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+D V S+ I D SKRR+TLSTSG VP I ++ ++I V LA Sbjct: 194 NVVMMGMGEPLLNYDAVLSSMQIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALA 253 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL----SNARRITFEYVMLKGINDSP 296 ISLHA +++LRN LVPIN+KYPL LI AC+ Y S+ + +T EYVML+G+ND P Sbjct: 254 ISLHAPNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESSRKHVTIEYVMLEGVNDHP 313 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 A +IK+LK +P+KINLIPFNP+P Y S + I++F + + +G+ IR RG Sbjct: 314 EHAQQMIKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGD 373 Query: 357 DILAACGQL-KSLSKRIPKVPRQEMQIT 383 DI AACGQL ++ R + + + ++T Sbjct: 374 DIDAACGQLVGQVADRTRRAEQWQKKVT 401 >gi|332187261|ref|ZP_08389000.1| radical SAM superfamily protein [Sphingomonas sp. S17] gi|332012682|gb|EGI54748.1| radical SAM superfamily protein [Sphingomonas sp. S17] Length = 394 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 198/372 (53%), Positives = 261/372 (70%), Gaps = 16/372 (4%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + LIG+ +++L EALL G+ + ++R+ QIW W+Y RG F M+DI++ L Sbjct: 23 RVDLIGLTKDQLREALLSAGMELKQAKLRSKQIWHWLYNRGAVRFADMTDIAKAQHPWLE 82 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + F I PE+V+ ++S DGTRKWLLR P + E V+IP+ RGTLCVSSQVGC+ Sbjct: 83 ERFVIGRPEVVEAQVSSDGTRKWLLRSPD-----GQDYEMVFIPDADRGTLCVSSQVGCT 137 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC+TGT +LVRNLTA EI+ QV+LAR LG++P + GR ++NIVMM Sbjct: 138 LNCRFCHTGTMRLVRNLTAGEIVGQVMLARDSLGEWPSQPE---------GRMLTNIVMM 188 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFD V+ +L + D GL+ SKRRITLSTSG VP +AR GEEIGV LA+SLHA Sbjct: 189 GMGEPLYNFDAVRDALKLVMDGDGLALSKRRITLSTSGVVPMMARAGEEIGVNLAVSLHA 248 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V+ D+R+ +VP+N+KY +E L+ AC YPG +NARRITFEYVMLK NDS DA L+++ Sbjct: 249 VTKDVRDEIVPLNKKYGIEELLQACADYPGANNARRITFEYVMLKDKNDSDADAHELVRL 308 Query: 306 LKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 L+ +PAK+NLIPFNPWPG Y CSD + I FS+ + G S+P+RTPRG DI AACG Sbjct: 309 LRHYKLPAKVNLIPFNPWPGAAYECSDPERIRRFSDIVFEGGISAPVRTPRGRDIDAACG 368 Query: 364 QLKSLSKRIPKV 375 QLK+ +++ + Sbjct: 369 QLKTAAEKKSRA 380 >gi|304387385|ref|ZP_07369577.1| cfr family radical SAM enzyme [Neisseria meningitidis ATCC 13091] gi|304338636|gb|EFM04754.1| cfr family radical SAM enzyme [Neisseria meningitidis ATCC 13091] Length = 364 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 159/377 (42%), Positives = 229/377 (60%), Gaps = 20/377 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + L +G R Q+ +W++ G ++F M+D+++ +RH LN Sbjct: 2 KTNLLNYDLQGLTRHFADMG----EKPFRAKQVMRWMHQSGAQNFNEMTDLAKSLRHKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I P+++ + S DGTRKWLL +G +ETV+IPE RGTLC+SSQVGC+ Sbjct: 58 EQAGIEIPKLMMSQESSDGTRKWLL-----DVGTGNGVETVFIPESDRGTLCISSQVGCA 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC TG Q RNLTA EI+ Q+ A +G V P R ISN+VMM Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEP+ NFDNV +LSI D G S+RR+T+STSG VP + R+ + + V LA+SLHA Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHA 221 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++RN +VP+N+KYPL+ L+ AC+ Y + ITFEYVML GIND + A LI++ Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + +P K NLIPFNP+P Y S ++I F + ++++G+ +R RG DI AACGQL Sbjct: 282 VTDVPCKFNLIPFNPFPNSRYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341 Query: 366 KSLSKRIPKVPRQEMQI 382 + + ++ QI Sbjct: 342 AGQVQDKTRRQQKWQQI 358 >gi|254673132|emb|CBA07913.1| conserved hypothetical protein [Neisseria meningitidis alpha275] gi|325144551|gb|EGC66850.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M01-240013] Length = 364 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 158/377 (41%), Positives = 229/377 (60%), Gaps = 20/377 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + L +G R Q+ +W++ G ++F M+D+++ +RH LN Sbjct: 2 KTNLLNYDLQGLTRHFADMG----EKPFRAKQVMRWMHQSGAQNFNEMTDLAKSLRHKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I P+++ + S DGTRKWLL +G +ETV+IPE RGTLC+SSQVGC+ Sbjct: 58 EQAGIEIPKLMMSQKSSDGTRKWLL-----DVGTGNGVETVFIPESDRGTLCISSQVGCA 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC TG Q RNLTA EI+ Q+ A +G V P R ISN+VMM Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEP+ NFDNV +LSI D G S+RR+T+STSG +P + R+ + + V LA+SLHA Sbjct: 162 GMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMIPQMDRLRDVMPVALAVSLHA 221 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++RN +VP+N+KYPL+ L+ AC+ Y + ITFEYVML GIND + A LI++ Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + +P K NLIPFNP+P Y S ++I F + ++++G+ +R RG DI AACGQL Sbjct: 282 VTDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQL 341 Query: 366 KSLSKRIPKVPRQEMQI 382 + + ++ QI Sbjct: 342 AGQVQDKTRRQQKWQQI 358 >gi|307543979|ref|YP_003896458.1| hypothetical protein HELO_1390 [Halomonas elongata DSM 2581] gi|307216003|emb|CBV41273.1| K06941 [Halomonas elongata DSM 2581] Length = 378 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 165/380 (43%), Positives = 230/380 (60%), Gaps = 22/380 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 ++ +L+GM REE+E L IG + R +Q+ KWI+ G DF M+++S+ +R L Sbjct: 11 QRPNLLGMTREEMEAFFLSIG----EKKFRAAQVMKWIHQEGCSDFASMTNLSKALRAQL 66 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS--RGTLCVSSQV 122 ++ I P +V E S DGTRKW+L +ETV IP + R TLCVSSQV Sbjct: 67 SEVAEIRGPSVVYEGTSSDGTRKWVLEVED-----GSYVETVLIPADNGKRRTLCVSSQV 121 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GCSL CSFC TG Q RNLTA EI+ QV +A + G + R ++N+ Sbjct: 122 GCSLDCSFCSTGKQGFQRNLTAAEIIGQVWVASNSFGP----------RHDTANRPVTNV 171 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL N+DNV ++ + D G S SKRR+TLSTSG VP + R+G+E+ V LAIS Sbjct: 172 VMMGMGEPLLNYDNVVPAMKLMLDDNGYSLSKRRVTLSTSGVVPMLDRLGDELDVSLAIS 231 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALN 301 LHA +++LR+ LVP+NRKY + L+DAC+ Y + R +T EY ++K +ND A Sbjct: 232 LHAANDELRSELVPLNRKYNIRTLLDACQRYLAKCDDTRMVTIEYTLIKDVNDQQEHARQ 291 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++L+ +P+KINLIPFNP+P Y + + F + + GY++PIR+ RG DI AA Sbjct: 292 LAELLQELPSKINLIPFNPFPHSGYETPSRNQVKRFQQWLADLGYTAPIRSTRGDDIDAA 351 Query: 362 CGQLKSLSKRIPKVPRQEMQ 381 CGQL K + + +Q Sbjct: 352 CGQLVGRVKDRTRRHERYIQ 371 >gi|300724166|ref|YP_003713483.1| putative pyruvate formate lyase activating enzyme 2 [Xenorhabdus nematophila ATCC 19061] gi|297630700|emb|CBJ91365.1| putative pyruvate formate lyase activating enzyme 2 [Xenorhabdus nematophila ATCC 19061] Length = 392 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 159/378 (42%), Positives = 219/378 (57%), Gaps = 23/378 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ + + +G R Q+ KW+Y DF+ M+DI++ +R L Sbjct: 25 KINLLDLNRKQMRQFFIDMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKVLRAKLQ 80 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 Q I PE+ +E+ S DGT KW + ++ETVYIPE R TLCVSSQVGC+ Sbjct: 81 QVAEIKAPEVAEEQRSSDGTIKWAITVGD------QQVETVYIPEDDRATLCVSSQVGCA 134 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + S R I+N+VMM Sbjct: 135 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------SLKSSGRRPITNVVMM 184 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 185 GMGEPLLNLNNVVPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 244 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++D+R+ +VPINRKY +E + R Y SNA R+T EYVML +NDS A L Sbjct: 245 PTDDIRDEIVPINRKYNIEEFLAGVRRYLTKSNANQGRVTVEYVMLDHVNDSVEQAHQLA 304 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 + LK P+KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG Sbjct: 305 ECLKDTPSKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACG 364 Query: 364 QLKSLS-KRIPKVPRQEM 380 QL R + ++ + Sbjct: 365 QLAGDVIDRTKRTLKKRL 382 >gi|304415499|ref|ZP_07396137.1| hypothetical protein in radical SAM superfamily [Candidatus Regiella insecticola LSR1] gi|304282648|gb|EFL91173.1| hypothetical protein in radical SAM superfamily [Candidatus Regiella insecticola LSR1] Length = 378 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 163/382 (42%), Positives = 223/382 (58%), Gaps = 23/382 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R++L +++G R Q+ KWIY DF+ MSDI++ +R L Sbjct: 10 KVNLLDLNRQQLRHFFIEMG----EKPFRADQVMKWIYHYCYDDFEQMSDINKVLRTKLQ 65 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 Q I PE+ E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC+ Sbjct: 66 QIAEIRAPEVAQEQRSADGTIKWAIKVGD------QQVETVYIPEADRATLCVSSQVGCA 119 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC T Q RNL EI+ QV A ++G + S R I+N+VMM Sbjct: 120 LECTFCSTAQQGFSRNLRVAEIIGQVWRAAKIIG----------SLKSSGRRPITNVVMM 169 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 170 GMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 229 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPINRKY ++ + A R Y SNA R+T EYVML INDSP A L Sbjct: 230 PTDEIRDEIVPINRKYNIDTFLAAVRRYLAKSNANQGRVTVEYVMLDHINDSPEQAHQLA 289 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 + LK P KINLIP+NP+PG Y S + FS+ + + G+++ +R RG DI AACG Sbjct: 290 ECLKNTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLIQYGFTTIVRKTRGDDIDAACG 349 Query: 364 QLKSLS-KRIPKVPRQEMQITG 384 QL R + ++ + G Sbjct: 350 QLAGEVIDRTKRTLKKRIAKEG 371 >gi|238921042|ref|YP_002934557.1| ribosomal RNA large subunit methyltransferase N [Edwardsiella ictaluri 93-146] gi|259491987|sp|C5BET4|RLMN_EDWI9 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|238870611|gb|ACR70322.1| radical SAM enzyme, Cfr family [Edwardsiella ictaluri 93-146] Length = 390 Score = 458 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 160/379 (42%), Positives = 214/379 (56%), Gaps = 23/379 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R ++ E +++G R QI KWIY DF M+DI++ +R L Sbjct: 22 EKINLLDLDRRQMREFFVQMG----EKPFRADQIMKWIYHYCCDDFDAMTDINKVLRARL 77 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q I PE+ E+ S DGT KW L+ +ETVYIPE R TLCVSSQVGC Sbjct: 78 KQVAEIRAPEVAVEQRSSDGTIKWALQVGD------QRVETVYIPEDDRATLCVSSQVGC 131 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNL EI+ QV A ++G + R I+N+VM Sbjct: 132 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AQKVTGNRPITNVVM 181 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 182 MGMGEPLLNLTNVIPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDTIDVALAISLH 241 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++ +R+ +VPINRKY ++M + + R Y SNA R+T EYVML IND A L Sbjct: 242 APNDTIRDEIVPINRKYNIDMFLGSVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQL 301 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + LK P KINLIP+NP+PG + S I FS+ + G++ +R RG DI AAC Sbjct: 302 AECLKDTPCKINLIPWNPFPGAPFGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAAC 361 Query: 363 GQLKSLS-KRIPKVPRQEM 380 GQL R + +++ Sbjct: 362 GQLAGEVIDRTKRTLKKQA 380 >gi|138894695|ref|YP_001125148.1| ribosomal RNA large subunit methyltransferase N [Geobacillus thermodenitrificans NG80-2] gi|205829768|sp|A4IM49|RLMN_GEOTN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|134266208|gb|ABO66403.1| Radical SAM family enzyme [Geobacillus thermodenitrificans NG80-2] Length = 364 Score = 458 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 127/366 (34%), Positives = 201/366 (54%), Gaps = 25/366 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 S+ + +EL+E L+ G R +QI++W+Y + + DF M+++ + +R L Sbjct: 19 PSIYSLTLDELKEWLVAHG----EKPFRATQIYEWLYGKRVTDFAEMTNLPKRLREQLAS 74 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 FSI + + ++ S DGT K+L IETV + ++CV++QVGC + Sbjct: 75 AFSITTLKTIVKQTSKDGTIKFLFELHD-----GYSIETVLMRHNYGNSVCVTTQVGCRI 129 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC + L R+L A EI+ QV+ + L + ++S+IV+MG Sbjct: 130 GCTFCASTLGGLKRHLEAGEIVAQVVQVQKALDE--------------TEERVSSIVVMG 175 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 +GEP N+D + K L I + S GL+ R IT+STSG +P I + +E + + AISLHA Sbjct: 176 IGEPFDNYDALIKFLRIVNHSKGLNIGARHITVSTSGIIPKIYQFADEGMQINFAISLHA 235 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + +LR L+PIN+ YPL L++A R+Y + R+TFEY + G+ND A L ++ Sbjct: 236 PTTELRTKLMPINKAYPLPKLMEAVRYYIEKTGR-RVTFEYGLFGGVNDQLEHAEQLAEL 294 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG+ +NLIP N P Y+ + + I F +K+ G + IR G DI AACGQL Sbjct: 295 LKGLKCHVNLIPVNYVPERNYVRTPRNQIFAFERALKKHGINVTIRREHGHDIDAACGQL 354 Query: 366 KSLSKR 371 ++ ++ Sbjct: 355 RAKERK 360 >gi|270264732|ref|ZP_06192997.1| hypothetical protein SOD_i01490 [Serratia odorifera 4Rx13] gi|270041415|gb|EFA14514.1| hypothetical protein SOD_i01490 [Serratia odorifera 4Rx13] Length = 398 Score = 458 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 160/378 (42%), Positives = 221/378 (58%), Gaps = 23/378 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E K+G R Q+ KWIY DF+ M+DI++ +R+ L Sbjct: 31 KINLLDLNRQQMREFFAKMG----EKPFRADQVMKWIYHYCCDDFEQMTDINKVLRNKLQ 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I PE+ +E+ S DGT KW + ++ETV+IP+ R TLCVSSQVGC+ Sbjct: 87 SVAEIRAPEVAEEQRSADGTIKWAITVGD------QQVETVFIPDGDRATLCVSSQVGCA 140 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + + R I+N+VMM Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------ALKVTGERPITNVVMM 190 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 191 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++ +R+ +VPINRKY +E + A R Y SNA R+T EYVML INDS DA L Sbjct: 251 PNDKIRDEIVPINRKYNIETFLAAVRRYLEKSNANQGRVTVEYVMLDHINDSTDDAHQLA 310 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AACG Sbjct: 311 EVLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 370 Query: 364 QLKSLS-KRIPKVPRQEM 380 QL R + +++M Sbjct: 371 QLAGEVIDRTKRTLKKKM 388 >gi|157371847|ref|YP_001479836.1| ribosomal RNA large subunit methyltransferase N [Serratia proteamaculans 568] gi|205829876|sp|A8GHW8|RLMN_SERP5 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|157323611|gb|ABV42708.1| radical SAM enzyme, Cfr family [Serratia proteamaculans 568] Length = 398 Score = 458 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 161/378 (42%), Positives = 222/378 (58%), Gaps = 23/378 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R++L E K+G R Q+ KW+Y DF+ M+DI++ +R+ L Sbjct: 31 KINLLDLNRQQLREFFAKMG----EKPFRADQVMKWMYHYCCDDFEQMTDINKVLRNKLQ 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I PE+ +E+ S DGT KW ++ ++ETVYIP+ R TLCVSSQVGC+ Sbjct: 87 SVAEIRAPEVAEEQRSADGTIKWAIKVGD------QQVETVYIPDGDRATLCVSSQVGCA 140 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + + R I+N+VMM Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------ALKVTGERPITNVVMM 190 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 191 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++ +R+ +VPINRKY +E + A R Y SNA R+T EYVML INDS DA L Sbjct: 251 PNDKIRDDIVPINRKYNIETFLAAVRRYLAKSNANQGRVTVEYVMLDHINDSTDDAHQLA 310 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AACG Sbjct: 311 EVLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 370 Query: 364 QLKSLS-KRIPKVPRQEM 380 QL R + +++M Sbjct: 371 QLAGEVIDRTKRTLKKKM 388 >gi|196247685|ref|ZP_03146387.1| radical SAM enzyme, Cfr family [Geobacillus sp. G11MC16] gi|196212469|gb|EDY07226.1| radical SAM enzyme, Cfr family [Geobacillus sp. G11MC16] Length = 366 Score = 458 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 127/366 (34%), Positives = 201/366 (54%), Gaps = 25/366 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 S+ + +EL+E L+ G R +QI++W+Y + + DF M+++ + +R L Sbjct: 21 PSIYSLTLDELKEWLVAHG----EKPFRATQIYEWLYGKRVTDFAEMTNLPKRLREQLAS 76 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 FSI + + ++ S DGT K+L IETV + ++CV++QVGC + Sbjct: 77 AFSITTLKTIVKQTSKDGTIKFLFELHD-----GYSIETVLMRHNYGNSVCVTTQVGCRI 131 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC + L R+L A EI+ QV+ + L + ++S+IV+MG Sbjct: 132 GCTFCASTLGGLKRHLEAGEIVAQVVQVQKALDE--------------TEERVSSIVVMG 177 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 +GEP N+D + K L I + S GL+ R IT+STSG +P I + +E + + AISLHA Sbjct: 178 IGEPFDNYDALIKFLRIVNHSKGLNIGARHITVSTSGIIPKIYQFADEGMQINFAISLHA 237 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + +LR L+PIN+ YPL L++A R+Y + R+TFEY + G+ND A L ++ Sbjct: 238 PTTELRTKLMPINKAYPLPKLMEAVRYYIEKTGR-RVTFEYGLFGGVNDQLEHAEQLAEL 296 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG+ +NLIP N P Y+ + + I F +K+ G + IR G DI AACGQL Sbjct: 297 LKGLKCHVNLIPVNYVPERNYVRTPRNQIFAFERALKKHGINVTIRREHGHDIDAACGQL 356 Query: 366 KSLSKR 371 ++ ++ Sbjct: 357 RAKERK 362 >gi|52841777|ref|YP_095576.1| radical SAM protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628888|gb|AAU27629.1| radical SAM enzyme, Cfr family [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 386 Score = 458 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 171/374 (45%), Positives = 228/374 (60%), Gaps = 19/374 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ +L E L+ R Q+++WI+ GIRDF M+++ + +R+ L Sbjct: 8 QKVNLLNYNYSQLRELLIAW----DEKPFRAQQLFQWIHQVGIRDFAQMTNLGKVLRNKL 63 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +Q I PEIV + S DGT KWLL+ IETV+IPE +RGTLCVSSQVGC Sbjct: 64 SQLACIDLPEIVACQKSADGTHKWLLKLEC-----GNCIETVFIPEANRGTLCVSSQVGC 118 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L CSFC T Q RNL+ EI+ QV LA L D G D +KI+N+VM Sbjct: 119 ALNCSFCSTAKQGFNRNLSTAEIIGQVWLAARELSDNNGTHD----------KKITNVVM 168 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV +++I D + SKRR+TLSTSG +P + R+ E V LA+SLH Sbjct: 169 MGMGEPLLNFDNVVSAMNIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSPVALAVSLH 228 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +++LRN LVPIN+KYPL LI C+ Y R++TFEYVMLKG+ND P A LIK Sbjct: 229 APTDELRNELVPINKKYPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIK 288 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L +PAK+NLIPFNP+P +Y S ++ I F + + + G ++ R RG DI AACGQ Sbjct: 289 LLHNVPAKVNLIPFNPFPLTQYQRSSRETIDAFRDKLMKHGINTITRKTRGDDIDAACGQ 348 Query: 365 LKSLSKRIPKVPRQ 378 L K ++ Sbjct: 349 LAGEVKDKTSRSQR 362 >gi|240115903|ref|ZP_04729965.1| hypothetical protein NgonPID1_06609 [Neisseria gonorrhoeae PID18] gi|260440282|ref|ZP_05794098.1| hypothetical protein NgonDG_04176 [Neisseria gonorrhoeae DGI2] gi|268601574|ref|ZP_06135741.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|291043577|ref|ZP_06569293.1| ribosomal RNA large subunit methyltransferase N [Neisseria gonorrhoeae DGI2] gi|268585705|gb|EEZ50381.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|291012040|gb|EFE04029.1| ribosomal RNA large subunit methyltransferase N [Neisseria gonorrhoeae DGI2] Length = 364 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 158/377 (41%), Positives = 230/377 (61%), Gaps = 20/377 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + L +G R Q+ +W++ G ++F M+D+++ +RH LN Sbjct: 2 KTNLLNYDLQGLTRHFADMG----EKPFRAKQVMRWMHQSGAQNFDEMTDLAKSLRHKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + SI P+++ + S DGTRKWLL +G +ETV+IPE RGTLC+SSQVGC+ Sbjct: 58 EQASIEIPKLMMSQESSDGTRKWLL-----DVGTGNGVETVFIPESDRGTLCISSQVGCA 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC TG Q RNLTA EI+ Q+ A +G V P R ISN+VMM Sbjct: 113 LECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEP+ NFDNV +LSI + G S+RR+T+STSG VP + R+ + + V LA+SLHA Sbjct: 162 GMGEPMANFDNVVTALSIMLNDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHA 221 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++RN +VP+N+KYPL+ L+ AC+ Y + ITFEYVML G+ND + A LI++ Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGVNDKAQHAYELIEL 281 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +K +P K NLIPFNP+P Y S ++I F + ++++ + +R RG DI AACGQL Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYERSSNENIRIFRDILQQAEFVVTVRKTRGDDIDAACGQL 341 Query: 366 KSLSKRIPKVPRQEMQI 382 + + ++ QI Sbjct: 342 AGQVQDKTRRQQKWQQI 358 >gi|205829856|sp|Q5ZV93|RLMN_LEGPH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|307610246|emb|CBW99808.1| hypothetical protein LPW_15701 [Legionella pneumophila 130b] Length = 382 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 171/374 (45%), Positives = 228/374 (60%), Gaps = 19/374 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ +L E L+ R Q+++WI+ GIRDF M+++ + +R+ L Sbjct: 4 QKVNLLNYNYSQLRELLIAW----DEKPFRAQQLFQWIHQVGIRDFAQMTNLGKVLRNKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +Q I PEIV + S DGT KWLL+ IETV+IPE +RGTLCVSSQVGC Sbjct: 60 SQLACIDLPEIVACQKSADGTHKWLLKLEC-----GNCIETVFIPEANRGTLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L CSFC T Q RNL+ EI+ QV LA L D G D +KI+N+VM Sbjct: 115 ALNCSFCSTAKQGFNRNLSTAEIIGQVWLAARELSDNNGTHD----------KKITNVVM 164 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV +++I D + SKRR+TLSTSG +P + R+ E V LA+SLH Sbjct: 165 MGMGEPLLNFDNVVSAMNIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSPVALAVSLH 224 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +++LRN LVPIN+KYPL LI C+ Y R++TFEYVMLKG+ND P A LIK Sbjct: 225 APTDELRNELVPINKKYPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIK 284 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L +PAK+NLIPFNP+P +Y S ++ I F + + + G ++ R RG DI AACGQ Sbjct: 285 LLHNVPAKVNLIPFNPFPLTQYQRSSRETIDAFRDKLMKHGINTITRKTRGDDIDAACGQ 344 Query: 365 LKSLSKRIPKVPRQ 378 L K ++ Sbjct: 345 LAGEVKDKTSRSQR 358 >gi|257453867|ref|ZP_05619145.1| radical SAM enzyme, Cfr family [Enhydrobacter aerosaccus SK60] gi|257448794|gb|EEV23759.1| radical SAM enzyme, Cfr family [Enhydrobacter aerosaccus SK60] Length = 399 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 154/384 (40%), Positives = 223/384 (58%), Gaps = 25/384 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+GM + EL + +G R +Q+ KWIY G+ DF M+++S++++ L+ Sbjct: 21 KTNLLGMSKAELGQFFADLG----EKPFRATQVMKWIYQFGVTDFYQMTNLSKKLQETLD 76 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVSS 120 + ++ P + ++ S DGTRKW+ + G +ETV IP R TLC+SS Sbjct: 77 EVATVSPPTVKFKQFSEDGTRKWVFE-----VAGGSLVETVLIPADDNKQFGRKTLCISS 131 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC+L CSFC TG Q R+L+ EI+ Q+ +A + + E +++ Sbjct: 132 QVGCALDCSFCSTGKQGFERDLSPSEIIGQLWVANQSYMENVPVTEREN--------RVT 183 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N++ V S+S+ D G SKRR+TLSTSG VP + + ++I V LA Sbjct: 184 NVVMMGMGEPLLNYEPVVASMSLMLDDFGFGLSKRRVTLSTSGIVPKMYELAKDIDVALA 243 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP---GLSNARRITFEYVMLKGINDSPR 297 ISLHA +++LRN LVPIN+KYPL+ LI A + Y + + +T EYVMLK +ND+ Sbjct: 244 ISLHAPNDELRNELVPINKKYPLKELIAAAKSYVYDENPRHKKHVTIEYVMLKDVNDTDE 303 Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 A L+ +LK +P KINLIPFNP+P Y S I FS + ++G+ IR RG D Sbjct: 304 HARQLVNLLKDLPCKINLIPFNPFPHAPYGRSSNNRIHAFSNILNQAGFVCTIRQTRGDD 363 Query: 358 ILAACGQLKSLSKRIPKVPRQEMQ 381 I AACGQL + +Q + Sbjct: 364 IDAACGQLVGQVTDKTRRAKQWQE 387 >gi|85712740|ref|ZP_01043785.1| Predicted Fe-S-cluster redox enzyme [Idiomarina baltica OS145] gi|85693472|gb|EAQ31425.1| Predicted Fe-S-cluster redox enzyme [Idiomarina baltica OS145] Length = 378 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 159/385 (41%), Positives = 226/385 (58%), Gaps = 26/385 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+ ++ ++G R Q+ KW+Y + DF M+++++ +R L Sbjct: 7 KKVNLLNLNRDGMKAFFKEMG----EKPFRADQVMKWLYHFCVDDFDEMTNLNKGLREKL 62 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q I PEI +++ S DGT K+++ ++ETV+IPE+ R TLCVSSQVGC Sbjct: 63 KQCAEIRAPEIREQQQSSDGTIKFVMTLFD-----GQDVETVWIPERDRATLCVSSQVGC 117 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC TG Q RNL EI+ QV LLG + + ++N+VM Sbjct: 118 ALECTFCSTGQQGFNRNLNVAEIIGQVWRVNQLLG----------AYGKTGIKPVTNVVM 167 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ + D G SKRR+TLSTSG VP + ++ E+I VMLAISLH Sbjct: 168 MGMGEPLLNLNNVVPAMDLMMDDYGFGLSKRRVTLSTSGVVPALDKLREQIDVMLAISLH 227 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN-ARRITFEYVMLKGINDSPRDALNLI 303 A +++LRN +VPIN+KY +E + + R Y S ++T EYVML +NDS A L Sbjct: 228 APNDELRNEIVPINKKYNIEQFLASSRKYVEQSKAQHKVTVEYVMLDHVNDSMDQAHELA 287 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 + LK P+KINLIPFNP+PG +Y S I F++ + G++ +R RG DI AACG Sbjct: 288 RTLKDTPSKINLIPFNPFPGSDYGRSSNSRIDRFAKVLMDYGFTVMVRKTRGDDIDAACG 347 Query: 364 QLKS----LSKRIPKVPRQEMQITG 384 QL +KRI K RQ+ Q G Sbjct: 348 QLVGDVIDRTKRILK--RQQAQRGG 370 >gi|291327220|ref|ZP_06127407.2| radical SAM enzyme, Cfr family [Providencia rettgeri DSM 1131] gi|291311232|gb|EFE51685.1| radical SAM enzyme, Cfr family [Providencia rettgeri DSM 1131] Length = 426 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 157/379 (41%), Positives = 220/379 (58%), Gaps = 23/379 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+++ E ++G R Q+ KWIY DF M+DI++ +R L Sbjct: 58 QKTNLLDLNRKQMREFFAQMG----EKPFRADQVMKWIYHYCYDDFDQMTDINKVLRAKL 113 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PE+ DE+ S DGT KW ++ + +ETVYIPE R TLCVSSQVGC Sbjct: 114 KEVAEIRAPEVADEQRSSDGTIKWAIKVGDQL------VETVYIPEADRATLCVSSQVGC 167 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNL EI+ QV A ++G + S R I+N+VM Sbjct: 168 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------SLKSSGRRPITNVVM 217 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D G SKRR+T+STSG VP + ++G+ I V LAISLH Sbjct: 218 MGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTISTSGVVPALDKLGDMIDVALAISLH 277 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++D+R+ +VPIN+KY +E +++ Y SNA R+T EYVML +NDS A L Sbjct: 278 APTDDIRDDIVPINKKYNIETFLNSVNRYLTKSNANAGRVTVEYVMLDHVNDSVEQAHQL 337 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + LK P+KINLIP+NP+PG Y S I F + + G+++ +R RG DI AAC Sbjct: 338 AECLKNTPSKINLIPWNPFPGAPYGRSSNSRIDRFCKVLMGYGFTTIVRKTRGDDIDAAC 397 Query: 363 GQLKSLS-KRIPKVPRQEM 380 GQL R + ++ + Sbjct: 398 GQLAGDVIDRTKRTLKKRL 416 >gi|293394872|ref|ZP_06639162.1| cfr family radical SAM enzyme [Serratia odorifera DSM 4582] gi|291422623|gb|EFE95862.1| cfr family radical SAM enzyme [Serratia odorifera DSM 4582] Length = 398 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 160/378 (42%), Positives = 221/378 (58%), Gaps = 23/378 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R++L E ++G R Q+ KW+Y DF+ M+DI++ +R+ L Sbjct: 31 KINLLDLNRQQLREFFAELG----EKPFRADQVMKWMYHYCCDDFEQMTDINKVLRNKLQ 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I PE+ +E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC+ Sbjct: 87 SIAEIRAPEVAEEQRSADGTIKWAIKVGD------QQVETVYIPEADRATLCVSSQVGCA 140 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + R I+N+VMM Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AQKVTGQRPITNVVMM 190 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 191 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++ +R+ +VPINRKY +E + + R Y SNA R+T EYVML INDS DA L Sbjct: 251 PNDTIRDEIVPINRKYNIETFLSSVRRYLEKSNANQGRVTVEYVMLDHINDSTDDAHQLA 310 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AACG Sbjct: 311 EVLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 370 Query: 364 QLKSLS-KRIPKVPRQEM 380 QL R + +++M Sbjct: 371 QLAGEVIDRTKRTLKKKM 388 >gi|296116218|ref|ZP_06834836.1| radical SAM enzyme, Cfr family protein [Gluconacetobacter hansenii ATCC 23769] gi|295977324|gb|EFG84084.1| radical SAM enzyme, Cfr family protein [Gluconacetobacter hansenii ATCC 23769] Length = 410 Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats. Identities = 186/373 (49%), Positives = 252/373 (67%), Gaps = 18/373 (4%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + L+G+ REEL E LL+IG RT Q+W WIY +G DF MS I++ ++ L Sbjct: 47 RRELVGLSREELTEILLEIG----EKPFRTKQLWHWIYHQGATDFSCMSSIAKPLQEKLA 102 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK--SRGTLCVSSQVG 123 + F I P+ + S D TRK+L RF E ETVYIP++ RG +C+SSQVG Sbjct: 103 ERFVISRPQAATVQTSSDETRKFLFRFRD-----GQEAETVYIPDRREDRGAVCISSQVG 157 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L+C+FC+TGTQ LVRNL A EI+ Q + AR G++P R +S IV Sbjct: 158 CTLSCTFCHTGTQGLVRNLGAAEIVGQFMAARDSYGEWPSPRG-------ETPRLLSTIV 210 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 +MGMGEPL N++N+ K++ I D G+ S+RRITLSTSG +P + + G+E+G+ LAISL Sbjct: 211 LMGMGEPLYNYENIAKAMKIIMDGEGIGLSRRRITLSTSGVIPMMDQCGDELGINLAISL 270 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HAV +DLR+ LVP+NRKYP+ LI ACR YP SNARRITFEY+ML+G+NDS DA L+ Sbjct: 271 HAVRDDLRDELVPLNRKYPIADLIAACRRYPAASNARRITFEYIMLRGVNDSEADARELV 330 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +++ GIPAK+NLIPFNPWPG + S ++ + F+ + +G++SPIR PRG DILAACG Sbjct: 331 RLIAGIPAKVNLIPFNPWPGSRFQPSTREQLDRFANIVMDAGFASPIRMPRGRDILAACG 390 Query: 364 QLKSLSKRIPKVP 376 QL++ S+R + P Sbjct: 391 QLRTESQRARRQP 403 >gi|330994687|ref|ZP_08318610.1| Ribosomal RNA large subunit methyltransferase N [Gluconacetobacter sp. SXCC-1] gi|329758328|gb|EGG74849.1| Ribosomal RNA large subunit methyltransferase N [Gluconacetobacter sp. SXCC-1] Length = 412 Score = 457 bits (1177), Expect = e-126, Method: Composition-based stats. Identities = 186/374 (49%), Positives = 255/374 (68%), Gaps = 18/374 (4%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + L+G+ REEL + +++IG RT Q+W WIY +G DF MS I++ ++ L Sbjct: 46 RRDLVGLSREELTDIMVEIG----EKPFRTKQLWHWIYHQGATDFSRMSSIARPLQEKLA 101 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK--SRGTLCVSSQVG 123 + F + P +V E+ S D TRK+L RF E ETVYIP++ RG +C+SSQVG Sbjct: 102 ERFVVGRPGVVTEQTSQDSTRKFLFRFRD-----GQEAETVYIPDRQEDRGAVCISSQVG 156 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L+C+FC+TGTQ LVRNL A EI+ Q + AR G++P + R +S IV Sbjct: 157 CTLSCTFCHTGTQALVRNLGAAEIVGQFMAARDSYGEWPSPKG-------DTPRLLSTIV 209 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 +MGMGEPL N+DNV K++ I D G+ S+RRITLSTSG VP + + G E+G+ LA+SL Sbjct: 210 LMGMGEPLYNYDNVAKAMRIIMDGEGIGLSRRRITLSTSGVVPMMDQCGAELGINLAVSL 269 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HAV +DLR+ +VP+NRKYP+ +I ACR YP SNARRITFEY+ML+GINDS DA L+ Sbjct: 270 HAVRDDLRDEIVPLNRKYPIRDVIAACRRYPAASNARRITFEYIMLRGINDSEADARELV 329 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +++ GIPAK+NLIPFNPWPG Y S ++ + F+ + +G++SPIR PRG DILAACG Sbjct: 330 RLISGIPAKVNLIPFNPWPGSSYRPSTREQLERFANIVMDAGFASPIRMPRGRDILAACG 389 Query: 364 QLKSLSKRIPKVPR 377 QL++ S+R+ + R Sbjct: 390 QLRTESQRLRRASR 403 >gi|255321140|ref|ZP_05362306.1| radical SAM enzyme, Cfr family [Acinetobacter radioresistens SK82] gi|262380171|ref|ZP_06073326.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter radioresistens SH164] gi|255301694|gb|EET80945.1| radical SAM enzyme, Cfr family [Acinetobacter radioresistens SK82] gi|262298365|gb|EEY86279.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter radioresistens SH164] Length = 411 Score = 457 bits (1177), Expect = e-126, Method: Composition-based stats. Identities = 168/397 (42%), Positives = 229/397 (57%), Gaps = 32/397 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 LKK +L+GM R ELE K+G + R Q+ KW++ + DF M++IS ++R Sbjct: 28 LKKVNLLGMSRAELENFFEKLG----EKKFRAGQVMKWMHQYFVTDFAEMTNISGKLRAK 83 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGTLCVS 119 L Q I PE+V S DGTRKW+ R G +ETV IP + R TLC+S Sbjct: 84 LEQLCEIKAPEVVHRHYSKDGTRKWVFRVGD---GAGSLVETVLIPAEDKTGLRKTLCIS 140 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 SQVGC+L CSFC TG Q R+LT +EI+ Q+ +A + + + R + Sbjct: 141 SQVGCALDCSFCSTGKQGFQRDLTPDEIIGQLWVANQSYME--------DVPVAERTRSV 192 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 +N+VMMGMGEPL N+D V S+ I D SKRR+TLSTSG VP I ++ ++I V L Sbjct: 193 TNVVMMGMGEPLLNYDAVLSSMYIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDIDVAL 252 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL----SNARRITFEYVMLKGINDS 295 AISLHA +++LRN LVPIN+KYPL LI AC+ Y S + +T EYVML G+NDS Sbjct: 253 AISLHAPNDELRNELVPINKKYPLAQLIAACQRYINKDGNESARKHVTIEYVMLDGVNDS 312 Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 A +I++LK +P+KINLIPFNP+P Y S + I+ F + + +G+ IR RG Sbjct: 313 LEHAQQMIRLLKNLPSKINLIPFNPFPHAPYGRSSRNRIIAFQKALSDAGFVCTIRQTRG 372 Query: 356 LDILAACGQL---------KSLSKRIPKVPRQEMQIT 383 DI AACGQL ++ + R E+ + Sbjct: 373 DDIDAACGQLVGQVADRTRRAEQWKKKVAERNEIMRS 409 >gi|148555870|ref|YP_001263452.1| radical SAM protein [Sphingomonas wittichii RW1] gi|205829890|sp|A5VAJ8|RLMN_SPHWW RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|148501060|gb|ABQ69314.1| radical SAM enzyme, Cfr family [Sphingomonas wittichii RW1] Length = 402 Score = 457 bits (1177), Expect = e-126, Method: Composition-based stats. Identities = 197/380 (51%), Positives = 264/380 (69%), Gaps = 16/380 (4%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + L+G+ R++L AL + R ++R Q+W WIY RG DF M+DI++++R L+ Sbjct: 31 RIDLLGLSRDDLRMALETAQLEPRQAKLRAKQLWHWIYNRGATDFAVMTDIAKDMRGWLD 90 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 Q F + PE+V+ ++S DGTRKWLLR + E V+IP+ RGTLCVSSQVGC+ Sbjct: 91 QRFVVSRPEVVEAQVSTDGTRKWLLR-----SDDGQDYEMVFIPDADRGTLCVSSQVGCT 145 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC+TGT KLVRNLT EI+ QV+LAR LG++P + GR ++NIVMM Sbjct: 146 LNCRFCHTGTMKLVRNLTPAEIVGQVMLARDALGEWPSQPE---------GRMLTNIVMM 196 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV+ +L + D GL+ SKRRITLST+G VP +AR GEEIGV LA+SLHA Sbjct: 197 GMGEPLYNFDNVRDALKLVMDGDGLALSKRRITLSTAGVVPMMARAGEEIGVNLAVSLHA 256 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ ++R+ +VP+NRKY +E L+ AC YPG +NARRITFEYVMLK ND DAL L+++ Sbjct: 257 ITKEVRDEIVPLNRKYGIEDLLQACADYPGANNARRITFEYVMLKDKNDRDEDALELVRL 316 Query: 306 LK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++ +PAK+NLIPFNPWPG Y CSD + FS+ I ++G S+P+RTPRG DI+AACG Sbjct: 317 IRKYRLPAKVNLIPFNPWPGAPYECSDPDRVARFSDLIFKAGISAPVRTPRGRDIMAACG 376 Query: 364 QLKSLSKRIPKVPRQEMQIT 383 QLKS +++ + M Sbjct: 377 QLKSAAEKKSRAELDRMAAE 396 >gi|304311805|ref|YP_003811403.1| hypothetical protein HDN1F_21750 [gamma proteobacterium HdN1] gi|301797538|emb|CBL45758.1| Conserved hypothetical protein [gamma proteobacterium HdN1] Length = 410 Score = 457 bits (1177), Expect = e-126, Method: Composition-based stats. Identities = 166/378 (43%), Positives = 229/378 (60%), Gaps = 20/378 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+GM R ELE+ + +G R Q+ KWI+ G+ DF M+++S+++R L Sbjct: 6 EKANLLGMTRRELEDFFVSLG----EKPFRAHQVMKWIHFFGVDDFDQMTNVSRDLREKL 61 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I P I E IS DGTRKW++R +ETV+IP+ +RGTLCVSSQVGC Sbjct: 62 KAVAVIPAPAISYENISKDGTRKWVIRL-----DNGNAVETVFIPDGNRGTLCVSSQVGC 116 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 SL CSFC TG Q R+LTA EI+ Q+ +A G + R I+N+VM Sbjct: 117 SLDCSFCSTGKQGFQRDLTAAEIIAQLWVANRSFG----------VPDNKGHRNITNVVM 166 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N DNV ++ I D +G +++R+TLSTSG VP + + + I V LA+SLH Sbjct: 167 MGMGEPLLNLDNVVSAMEIMKDDLGYGVARKRVTLSTSGVVPKMYELFDRIDVSLAVSLH 226 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN-ARRITFEYVMLKGINDSPRDALNLI 303 A ++ LR+ L+PINRKYPL L+ ACR+Y N RR+T EYV+L GIND+ A L+ Sbjct: 227 APNDTLRDELMPINRKYPLAELLKACRYYVDKYNDGRRVTMEYVLLDGINDTFAHAAELV 286 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++L+ +P+KINLIPFNP+P Y + + F E + ++ Y + IRT RG DI AACG Sbjct: 287 ELLRDVPSKINLIPFNPFPHAPYKRPNGYRVKAFQEVLLKADYVTTIRTTRGDDIDAACG 346 Query: 364 QLKSLSKRIPKVPRQEMQ 381 QL + + Q Q Sbjct: 347 QLVGQVQDRTRRQAQWSQ 364 >gi|318606744|emb|CBY28242.1| ribosomal RNA large subunit methyltransferase N [Yersinia enterocolitica subsp. palearctica Y11] Length = 397 Score = 457 bits (1177), Expect = e-126, Method: Composition-based stats. Identities = 158/378 (41%), Positives = 219/378 (57%), Gaps = 23/378 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E ++G R Q+ KW+Y DF+ M+DI++ +R L Sbjct: 30 KINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCFDDFEQMTDINKVLRAKLQ 85 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+ +E+ S DG KW ++ ++ETVYIPE R TLCVSSQVGC+ Sbjct: 86 RVAEIRAPEVAEEQRSTDGAIKWAIKVGD------QQVETVYIPEGDRATLCVSSQVGCA 139 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + + R I+N+VMM Sbjct: 140 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------SLKSTGTRPITNVVMM 189 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 190 GMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 249 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNLI 303 ++D+R+ +VPINRKY +E + A R Y SN R+T EYVML INDS A L Sbjct: 250 PTDDIRDEIVPINRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQLA 309 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AACG Sbjct: 310 ECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 369 Query: 364 QLKSLS-KRIPKVPRQEM 380 QL R + +++M Sbjct: 370 QLAGEVIDRTKRTLKKKM 387 >gi|239826567|ref|YP_002949191.1| ribosomal RNA large subunit methyltransferase N [Geobacillus sp. WCH70] gi|239806860|gb|ACS23925.1| radical SAM enzyme, Cfr family [Geobacillus sp. WCH70] Length = 364 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 127/366 (34%), Positives = 204/366 (55%), Gaps = 25/366 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 S+ + E+L++ +++ G R +QI++W+Y + DF M+++ + +R L++ Sbjct: 19 PSIYSLTFEQLKDWIIEQG----EKPFRATQIYEWLYQKRATDFSEMTNLPKTLREKLSE 74 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 HF I + + ++ S DGT K+L IETV + ++CV++QVGC + Sbjct: 75 HFDITTLKTLVKQTSKDGTIKFLFELHD-----GYSIETVLMRHNYGNSICVTTQVGCRI 129 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC + L R+L A EI+ QV+ + L + G ++S+IV+MG Sbjct: 130 GCTFCASTLGGLKRHLEAGEIVAQVVKVQKALDE--------------QGERVSSIVVMG 175 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 +GEP N+D + K L I + S GL+ R IT+STSG +P I + +E + V AISLHA Sbjct: 176 IGEPFDNYDELIKFLKIVNHSKGLNIGARHITVSTSGIIPKIYQFADEGMQVNFAISLHA 235 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + +LR L+PIN+ YPL L+DA R+Y + R+TFEY + G+ND A L ++ Sbjct: 236 PTTELRTKLMPINKAYPLPKLMDAVRYYIEKTGR-RVTFEYGLFGGVNDQIEHAEQLAEL 294 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +KG+ +NLIP N P Y+ + + I F +K+ G + IR G DI AACGQL Sbjct: 295 IKGLKCHVNLIPVNYVPERNYVRTPRDQIFAFERALKKHGINVTIRREHGHDIDAACGQL 354 Query: 366 KSLSKR 371 ++ ++ Sbjct: 355 RAKERK 360 >gi|54297459|ref|YP_123828.1| hypothetical protein lpp1504 [Legionella pneumophila str. Paris] gi|81370554|sp|Q5X516|RLMN_LEGPA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|53751244|emb|CAH12655.1| hypothetical protein lpp1504 [Legionella pneumophila str. Paris] Length = 382 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 170/374 (45%), Positives = 227/374 (60%), Gaps = 19/374 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ +L E L+ R Q+++WI+ GI DF M+++ + +R+ L Sbjct: 4 QKVNLLNYNYSQLRELLIAW----DEKPFRAQQLFQWIHQVGICDFAQMTNLGKVLRNKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +Q I PEIV + S DGT KWLL+ IETV+IPE +RGTLCVSSQVGC Sbjct: 60 SQLACIDLPEIVACQKSADGTHKWLLKLEC-----GNCIETVFIPEANRGTLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L CSFC T Q RNL+ EI+ QV LA L D G D +KI+N+VM Sbjct: 115 ALNCSFCSTAKQGFNRNLSTAEIIGQVWLAARELSDNNGTHD----------KKITNVVM 164 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV +++I D + SKRR+TLSTSG +P + R+ E V LA+SLH Sbjct: 165 MGMGEPLLNFDNVVSAMNIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSPVALAVSLH 224 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +++LRN LVPIN+KYPL LI C+ Y R++TFEYVMLKG+ND P A LIK Sbjct: 225 APTDELRNELVPINKKYPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIK 284 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L +PAK+NLIPFNP+P +Y S ++ I F + + + G ++ R RG DI AACGQ Sbjct: 285 LLHNVPAKVNLIPFNPFPLTQYQRSSRETIDAFRDKLMKHGINTITRKTRGDDIDAACGQ 344 Query: 365 LKSLSKRIPKVPRQ 378 L K ++ Sbjct: 345 LAGEVKDKTSRSQR 358 >gi|238758832|ref|ZP_04620005.1| Ribosomal RNA large subunit methyltransferase N [Yersinia aldovae ATCC 35236] gi|238702940|gb|EEP95484.1| Ribosomal RNA large subunit methyltransferase N [Yersinia aldovae ATCC 35236] Length = 398 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 160/378 (42%), Positives = 219/378 (57%), Gaps = 23/378 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E ++G R Q+ KW+Y DF+ M+DI++ +R L Sbjct: 31 KINLLDLNRQQMREFFAEMG----EKPFRADQVMKWMYHYCFDDFEQMTDINKGLRTKLQ 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+ +E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC+ Sbjct: 87 RVAEIRAPEVAEEQRSTDGTIKWAIKVGD------QQVETVYIPEGDRATLCVSSQVGCA 140 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G V + R I+N+VMM Sbjct: 141 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AVKATGIRPITNVVMM 190 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 191 GMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 250 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPRDALNLI 303 ++D+R+ +VPINRKY +E + A R Y S N R+T EYVML INDS A L Sbjct: 251 PTDDIRDDIVPINRKYNIETFLAAVRRYLAKSKANGGRVTVEYVMLDHINDSTEQAHQLA 310 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG DI AACG Sbjct: 311 ACLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACG 370 Query: 364 QLKSLS-KRIPKVPRQEM 380 QL R + +++M Sbjct: 371 QLAGEVIDRTKRTLKKKM 388 >gi|15603872|ref|NP_246946.1| hypothetical protein PM2007 [Pasteurella multocida subsp. multocida str. Pm70] gi|81636369|sp|Q9CJJ8|RLMN_PASMU RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|12722449|gb|AAK04091.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 394 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 159/383 (41%), Positives = 221/383 (57%), Gaps = 22/383 (5%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 + KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R Sbjct: 23 DQAKKINLMNLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLR 78 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L Q I PE+ E+ S DGT KW ++ ++ETVYIPE R TLCVSSQ Sbjct: 79 DKLKQVAEIKAPEVAVEQRSADGTIKWAMQVGD------QQVETVYIPEADRATLCVSSQ 132 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC+L C+FC T Q RNLT EI+ QV A ++G+F + R I+N Sbjct: 133 VGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITN 182 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 +VMMGMGEPL N NV ++ I D SKRR+TLSTSG VP + ++ E I V LAI Sbjct: 183 VVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKLSEMIDVALAI 242 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299 SLHA +++LR+ +VPIN+KY ++ML+D+ Y +SNA ++T EYVML +ND A Sbjct: 243 SLHAPNDELRDEIVPINKKYNIKMLMDSVNRYLSVSNANHGKVTIEYVMLDHVNDGVEHA 302 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L ++LK P KINLIP+NP+P Y S I F + + G++ +R RG DI Sbjct: 303 HQLAQVLKNTPCKINLIPWNPFPEAPYAKSSNSRIDRFQKTLMEYGFTVIVRKTRGDDID 362 Query: 360 AACGQLKSLSKRIPKVPRQEMQI 382 AACGQL K Q+ Q Sbjct: 363 AACGQLAGDVIDRTKRTAQKKQF 385 >gi|262374935|ref|ZP_06068169.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter lwoffii SH145] gi|262309948|gb|EEY91077.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter lwoffii SH145] Length = 411 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 167/392 (42%), Positives = 233/392 (59%), Gaps = 27/392 (6%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 N ++K +L+GM R ++E+ +G + R Q+ KWI+ + DF M++IS ++R Sbjct: 26 NTVEKVNLLGMSRPQMEKFFEDMG----EKKFRAGQVMKWIHQFFVTDFAEMTNISGKLR 81 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG----TLC 117 L + I PE+V + S DGTRKW+ R G +ETV IP + R TLC Sbjct: 82 EKLEKICEIKAPEVVHKNYSKDGTRKWVFRVGD---GEGSLVETVLIPAEHRSGLRRTLC 138 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 +SSQVGC+L CSFC TG Q R+LT EI+ Q+ +A + + E R Sbjct: 139 ISSQVGCALDCSFCSTGKQGFQRDLTQAEIIGQLWMANYSYMEDVPVLERE--------R 190 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 ++N+VMMGMGEPL N+D V S+ I D SKRR+TLSTSG VP I ++ ++I V Sbjct: 191 SVTNVVMMGMGEPLLNYDAVLNSMRIMLDDFAYGMSKRRVTLSTSGVVPKIDQMVKDIDV 250 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL----SNARRITFEYVMLKGIN 293 LAISLHA +++LRN LVPIN+KYPLE LI AC+ Y S+ + +T EYVML G+N Sbjct: 251 ALAISLHAPNDELRNELVPINKKYPLEQLIAACQRYIAKDGNESSRKHVTIEYVMLDGVN 310 Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353 D P A +IK+LK +P+KINLIPFNP+P Y S + I++F + + +G+ IR Sbjct: 311 DHPEHAQQMIKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQT 370 Query: 354 RGLDILAACGQL----KSLSKRIPKVPRQEMQ 381 RG DI AACGQL ++R + ++ Q Sbjct: 371 RGDDIDAACGQLVGQVADRTRRAEQWKKKIAQ 402 >gi|260752519|ref|YP_003225412.1| radical SAM enzyme, Cfr family [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551882|gb|ACV74828.1| radical SAM enzyme, Cfr family [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 391 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 190/372 (51%), Positives = 259/372 (69%), Gaps = 16/372 (4%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + L+G+ RE++ AL G+ ++ ++RT Q+W W+Y RG F GM+DI++ +R L Sbjct: 27 RIDLLGLSREDIRAALKSKGLDEKQAKLRTKQLWHWMYNRGAVAFDGMTDIAKTMRPWLA 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +HF+I PE+V +IS DGTRKWLL+ + E V+IP+ RGTLC+SSQ+GC+ Sbjct: 87 EHFAISRPEVVTMQISTDGTRKWLLKT-----DDGYDYEMVFIPDADRGTLCISSQIGCT 141 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC TGT +LVRNLT EI+ Q++LAR L ++P + GR ++N+VMM Sbjct: 142 LNCRFCNTGTMRLVRNLTVGEIVGQIMLARDSLDEWPSKPE---------GRLLTNVVMM 192 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV+ +L + D G++ S+RRITLSTSG VP +AR GEEIGV LA+SLHA Sbjct: 193 GMGEPLYNFDNVRDALKLVMDGDGIALSRRRITLSTSGVVPMMARAGEEIGVNLAVSLHA 252 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V+ +R+ +VPIN+KY ++ L+ AC YPG++NARRITFEYVMLK NDS DA L+++ Sbjct: 253 VTKAVRDEIVPINKKYGIDELLAACAAYPGVNNARRITFEYVMLKDKNDSEEDAHELVRL 312 Query: 306 LK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 L+ +PAK+NLIPFNPWP Y CS + I FSE + +G S+P+R RG DI+AACG Sbjct: 313 LQYYRLPAKVNLIPFNPWPNSPYECSTPERIARFSEIVFNAGISAPVRRTRGQDIMAACG 372 Query: 364 QLKSLSKRIPKV 375 QLKS ++R K Sbjct: 373 QLKSAAERQSKR 384 >gi|56461137|ref|YP_156418.1| ribosomal RNA large subunit methyltransferase N [Idiomarina loihiensis L2TR] gi|81363032|sp|Q5QYC0|RLMN_IDILO RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|56180147|gb|AAV82869.1| Predicted Fe-S-cluster redox enzyme [Idiomarina loihiensis L2TR] Length = 378 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 163/385 (42%), Positives = 226/385 (58%), Gaps = 26/385 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + RE ++E ++G R Q+ KW+Y + DF M+++++ +R L Sbjct: 7 KKVNLLDLNREGIKEFFREMG----EKPFRAEQVMKWLYHFCVDDFDEMTNLNKALREKL 62 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q I PE+ +++ S DGT K+ + ++ETV+IPE R TLCVSSQVGC Sbjct: 63 KQVAEIRAPEVREQQQSSDGTIKFAMTLFD-----GQDVETVWIPEGDRATLCVSSQVGC 117 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC TG Q RNL+ EI+ QV LLG + + ++N+VM Sbjct: 118 ALECTFCSTGAQGFNRNLSVAEIIGQVWRVNQLLG----------AYGKTGIKPVTNVVM 167 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ + D +G SKRR+TLSTSG VP + ++ E I VMLAISLH Sbjct: 168 MGMGEPLLNLNNVVPAMELMLDDLGFGLSKRRVTLSTSGVVPALEKLRERIDVMLAISLH 227 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALNLI 303 A ++LRN +VPIN+KY +E + + R Y S A+R +T EYVML +NDS A L Sbjct: 228 APDDELRNEIVPINKKYNIEEFLASSRRYVEQSKAQRKVTVEYVMLDHVNDSTDQAHALA 287 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K LK P+KINLIPFNP+PG +Y S I F++ + G + +R RG DI AACG Sbjct: 288 KTLKDTPSKINLIPFNPFPGSDYGRSSNSRIDRFAKVLMEYGLTVMVRKTRGDDIDAACG 347 Query: 364 QLKS----LSKRIPKVPRQEMQITG 384 QL +KRI K RQ+ Q G Sbjct: 348 QLVGDVIDRTKRILK--RQQKQRGG 370 >gi|241761759|ref|ZP_04759845.1| radical SAM enzyme, Cfr family [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373673|gb|EER63233.1| radical SAM enzyme, Cfr family [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 391 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 190/372 (51%), Positives = 259/372 (69%), Gaps = 16/372 (4%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + L+G+ RE++ AL G+ ++ ++RT Q+W W+Y RG F GM+DI++ +R L Sbjct: 27 RIDLLGLSREDIRAALKSKGLDEKQAKLRTKQLWHWMYNRGAVAFDGMTDIAKTMRPWLA 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +HF+I PE+V +IS DGTRKWLL+ + E V+IP+ RGTLC+SSQ+GC+ Sbjct: 87 EHFAISRPEVVTMQISTDGTRKWLLKT-----DDGYDYEMVFIPDADRGTLCISSQIGCT 141 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC TGT +LVRNLT EI+ Q++LAR L ++P + GR ++N+VMM Sbjct: 142 LNCRFCNTGTMRLVRNLTVGEIVGQIMLARDSLDEWPSKPE---------GRLLTNVVMM 192 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV+ +L + D G++ S+RRITLSTSG VP +AR GEEIGV LA+SLHA Sbjct: 193 GMGEPLYNFDNVRDALKLVMDGDGIALSRRRITLSTSGVVPMMARAGEEIGVNLAVSLHA 252 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V+ +R+ +VPIN+KY ++ L+ AC YPG++NARRITFEYVMLK NDS DA L+++ Sbjct: 253 VTKAVRDEIVPINKKYGIDELLAACAAYPGVNNARRITFEYVMLKDKNDSEEDAHELVRL 312 Query: 306 LK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 L+ +PAK+NLIPFNPWP Y CS + I FSE + +G S+P+R RG DI+AACG Sbjct: 313 LQYYRLPAKVNLIPFNPWPNSPYECSTPERIARFSEIVFNAGISAPVRRTRGQDIMAACG 372 Query: 364 QLKSLSKRIPKV 375 QLKS ++R K Sbjct: 373 QLKSAAERQSKR 384 >gi|148359081|ref|YP_001250288.1| Cfr family transporter radical SAM protein [Legionella pneumophila str. Corby] gi|296107129|ref|YP_003618829.1| radical SAM enzyme, Cfr family [Legionella pneumophila 2300/99 Alcoy] gi|205829782|sp|A5IC42|RLMN_LEGPC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|148280854|gb|ABQ54942.1| radical SAM enzyme, Cfr family [Legionella pneumophila str. Corby] gi|295649030|gb|ADG24877.1| radical SAM enzyme, Cfr family [Legionella pneumophila 2300/99 Alcoy] Length = 382 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 172/374 (45%), Positives = 228/374 (60%), Gaps = 19/374 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ +L E L+ R Q+++WI+ GIRDF M+++ + +R+ L Sbjct: 4 QKVNLLNYNYSQLRELLMAW----DEKPFRAQQLFQWIHQVGIRDFAQMTNLGKVLRNKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +Q I PEIV + S DGT KWLL+ IETV+IPE +RGTLCVSSQVGC Sbjct: 60 SQLACIDLPEIVACQKSADGTHKWLLKLEC-----GNCIETVFIPEANRGTLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L CSFC T Q RNL+ EI+ QV LA L D G D +KI+N+VM Sbjct: 115 ALNCSFCSTAKQGFNRNLSTAEIIGQVWLAARELSDNNGAHD----------KKITNVVM 164 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV ++SI D + SKRR+TLSTSG +P + R+ E V LA+SLH Sbjct: 165 MGMGEPLLNFDNVVSAMSIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSPVALAVSLH 224 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +++LRN LVPIN+KYPL LI C+ Y R++TFEYVMLKG+ND P A LIK Sbjct: 225 APTDELRNELVPINKKYPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIK 284 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L +PAK+NLIPFNP+P +Y S ++ I F + + + G ++ R RG DI AACGQ Sbjct: 285 LLHNVPAKVNLIPFNPFPLTQYQRSSRETIDAFRDKLIKHGINTITRKTRGDDIDAACGQ 344 Query: 365 LKSLSKRIPKVPRQ 378 L K ++ Sbjct: 345 LAGEVKDKTTRSQR 358 >gi|209521129|ref|ZP_03269857.1| radical SAM enzyme, Cfr family [Burkholderia sp. H160] gi|209498439|gb|EDZ98566.1| radical SAM enzyme, Cfr family [Burkholderia sp. H160] Length = 383 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 152/384 (39%), Positives = 219/384 (57%), Gaps = 10/384 (2%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +L+ + + L +G R Q+ +WI+ DF GM+D+++ + Sbjct: 1 MTSSPSVNLLDLDAQGLVAYCDSLG----EKPFRAKQLQRWIHQYNAADFDGMTDLAKSL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L +I P +V + IS DGTRKWL+ +G +ETVYIPE++RGTLCVSS Sbjct: 57 REKLKGRATITMPGVVSDHISSDGTRKWLI-----DVGNGNAVETVYIPEETRGTLCVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI- 179 Q GC++ C FC TG Q RNLT EI+ Q+ +A L G M G ++ Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLTTGEIIGQLRMAEFALRASRGDAGGRAMGGDGKGERVV 171 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 +N+VMMGMGEPL N+D V ++ + D S+RR+TLSTSG VP + R+G ++ V L Sbjct: 172 TNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLPVAL 231 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA ++ LR+ LVP+N+KYPL L+ AC Y ++ ITFEY ML G+NDS A Sbjct: 232 AVSLHAPNDALRDELVPLNKKYPLRELMAACERYLKVAPRDFITFEYCMLDGVNDSEAHA 291 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L+ + + +P K NLIPFNP+P + S Q+ I F++ + +G + +R RG DI Sbjct: 292 RQLLAVTRDVPCKFNLIPFNPFPESGLIRSKQEQIKRFAQVLIDAGVVTTVRKTRGDDID 351 Query: 360 AACGQLKSLSKRIPKVPRQEMQIT 383 AACGQL K ++ + + Sbjct: 352 AACGQLAGAVKDRTRLAERTGKAA 375 >gi|194290009|ref|YP_002005916.1| hypothetical protein RALTA_A1912 [Cupriavidus taiwanensis LMG 19424] gi|193223844|emb|CAQ69853.1| Conserved hypothetical protein; radical SAM enzyme, Cfr family domain; putative iron binding enzyme [Cupriavidus taiwanensis LMG 19424] Length = 384 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 153/378 (40%), Positives = 219/378 (57%), Gaps = 18/378 (4%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN L +L+ + + L ++G R Q+ +WI+ G F MSD+++ + Sbjct: 1 MNDL--VNLLDLDADALTAYCGELG----EKPFRARQLQRWIHHYGASRFDAMSDLAKSL 54 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L I P ++ + +S DGTRKWLL +G +ETVYIPE++RGTLCVSS Sbjct: 55 REKLATRAEIRAPAVITDNLSADGTRKWLL-----DVGEGNAVETVYIPEETRGTLCVSS 109 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC++ C FC TG Q RNL+ EI+ Q+ +A + + G P R IS Sbjct: 110 QAGCAVNCRFCSTGKQGFSRNLSTGEIIGQLWMAEFAMREQLGR-------GPKDDRVIS 162 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+D V ++ + D S+RR+TLSTSG VP + R+ +++ V LA Sbjct: 163 NVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSKDLPVALA 222 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++ LR++LVP+N+KYPL L+ ACR Y + ITFEY ML G+ND A Sbjct: 223 VSLHASNDALRDVLVPLNKKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDGVEHAR 282 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L+K++ +P K NLIPFNP+P S+ + I F++ + +G + IR RG DI A Sbjct: 283 ELLKLVADVPCKFNLIPFNPFPESGLKRSNNEQIRRFAQVLMDAGVVTTIRKTRGDDIDA 342 Query: 361 ACGQLKSLSKRIPKVPRQ 378 ACGQL K ++ + Sbjct: 343 ACGQLAGEVKDRTRLAER 360 >gi|330830071|ref|YP_004393023.1| ribosomal RNA large subunit methyltransferase N [Aeromonas veronii B565] gi|328805207|gb|AEB50406.1| Ribosomal RNA large subunit methyltransferase N [Aeromonas veronii B565] Length = 367 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 157/382 (41%), Positives = 213/382 (55%), Gaps = 28/382 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+ + +++G R Q+ KWIY G DF M+++++ ++ L Sbjct: 5 KINLLDLDRDAMRAFFVELG----EKPFRADQVMKWIYHFGCDDFDQMTNVNKVLKERLK 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I PEI E+ S DGT KW L+ E+ETVYIPE R TLCVSSQVGC+ Sbjct: 61 AIAEIKAPEISREQRSADGTIKWALQVGD------QEVETVYIPEDDRATLCVSSQVGCA 114 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G R I+N+VMM Sbjct: 115 LECKFCSTAQQGFNRNLKVSEIIGQVWRAARVVG---------------GKRPITNVVMM 159 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N NV ++ + D G SKRR+T+STSG VP + ++G++I V LAISLHA Sbjct: 160 GMGEPLLNLANVVPAMRLMMDDYGFGISKRRVTISTSGVVPALDKLGDQIDVALAISLHA 219 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNLI 303 ++ LR+ ++PIN KY +E + R Y SN R+T EYV+L IND + A L Sbjct: 220 PNDKLRSEIMPINDKYNIEEFLAGVRRYLAKSNANGGRVTVEYVLLDHINDDMQHAHELA 279 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+LK P+KINLIPFNP+PG Y I FS+ + G++ +R RG DI AACG Sbjct: 280 KVLKDTPSKINLIPFNPFPGNPYGKPSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAACG 339 Query: 364 QL-KSLSKRIPKVPRQEMQITG 384 QL + R + + MQ G Sbjct: 340 QLVGDVIDRTKRTIKNRMQQDG 361 >gi|329848315|ref|ZP_08263343.1| radical SAM superfamily protein [Asticcacaulis biprosthecum C19] gi|328843378|gb|EGF92947.1| radical SAM superfamily protein [Asticcacaulis biprosthecum C19] Length = 405 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 207/378 (54%), Positives = 271/378 (71%), Gaps = 17/378 (4%) Query: 7 ESLIGMMREELEEALLKIGI-PQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 ++ G+ R+ L ALL+ G+ +R +MR QIW+WI+ G+ DF M+DI+++ R L Sbjct: 18 VNITGLTRDGLVRALLESGVVEERKAKMRMQQIWRWIHHYGVTDFDLMTDIAKDQRALFA 77 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGC 124 F++ PEIV+ +IS DGTRK+L+R G +E+E+V+IP R G LCVSSQVGC Sbjct: 78 DRFTLARPEIVERQISRDGTRKYLIRM-----GPGIEVESVFIPSVGRAGALCVSSQVGC 132 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC+TGTQKLVRNLTA EI+ QV +AR LG++P P R++SNIV Sbjct: 133 TLNCTFCHTGTQKLVRNLTAAEIVAQVQVARDDLGEWPS---------PKEDRQLSNIVF 183 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N DNV ++ I SD+ G++ S+RRIT+STSG VP + +G MLAISLH Sbjct: 184 MGMGEPLYNLDNVADAIDIISDNEGIALSRRRITVSTSGVVPELEALGNRTAAMLAISLH 243 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++ LR+ +VP+N+KY +E L+ R YPGLSNARR+TFEYVMLKG+NDSP +A LIK Sbjct: 244 ATNDTLRDEIVPLNKKYNIEALMAGIRAYPGLSNARRVTFEYVMLKGVNDSPAEARALIK 303 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGIPAKINLIPFNPWPG +Y CSD I TF+ + ++GY+SPIRTPRG DILAACGQ Sbjct: 304 LLKGIPAKINLIPFNPWPGTDYQCSDWTAIETFAAILNKAGYASPIRTPRGRDILAACGQ 363 Query: 365 LKSLSKRIPK-VPRQEMQ 381 LKS S++ V R+E Q Sbjct: 364 LKSDSEKKRASVLRREAQ 381 >gi|260913157|ref|ZP_05919639.1| cfr family radical SAM enzyme [Pasteurella dagmatis ATCC 43325] gi|260632744|gb|EEX50913.1| cfr family radical SAM enzyme [Pasteurella dagmatis ATCC 43325] Length = 391 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 161/380 (42%), Positives = 221/380 (58%), Gaps = 22/380 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+++ E ++G R Q+ KWIY G DF M++I++++R L Sbjct: 23 KKINLMNLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDDFDNMTNINKKLRDKL 78 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q I PE+ E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC Sbjct: 79 KQVAEIKAPEVAVEQRSADGTIKWAMQVGD------QQVETVYIPEADRATLCVSSQVGC 132 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F + R I+N+VM Sbjct: 133 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 182 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+TLSTSG VP + ++ E I V LAISLH Sbjct: 183 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKLSEMIDVALAISLH 242 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ +VPIN+KY ++ LID+ Y +SNA ++T EYVML +NDS A L Sbjct: 243 APNDELRDEIVPINKKYNIKALIDSVNRYLSVSNANHGKVTIEYVMLDHVNDSVEHAHQL 302 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P+KINLIP+NP+P Y S I F + + G++ +R RG DI AAC Sbjct: 303 AQVLKNTPSKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIVRKTRGDDIDAAC 362 Query: 363 GQLKSLSKRIPKVPRQEMQI 382 GQL K Q+ Q Sbjct: 363 GQLAGDVIDRTKRTAQKKQF 382 >gi|253999428|ref|YP_003051491.1| radical SAM enzyme, Cfr family [Methylovorus sp. SIP3-4] gi|253986107|gb|ACT50964.1| radical SAM enzyme, Cfr family [Methylovorus sp. SIP3-4] Length = 367 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 159/376 (42%), Positives = 219/376 (58%), Gaps = 21/376 (5%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+ + +L E +G R Q+ +W++ G+ DF M+DI++ +R L Sbjct: 3 VNLLNYSQPQLAEYFHGLG----EKPFRAKQLMRWMHHFGVHDFDQMTDIAKSLRDKLKD 58 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I P I E+IS DGTRKWL+ G +ETV+IPE RGTLCVSSQVGC+L Sbjct: 59 QAEITPPGIKLEQISEDGTRKWLI-----DAGTGNGVETVFIPEAERGTLCVSSQVGCAL 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC TG Q RNLT EI+ Q+ +A LG P R ISN+VMMG Sbjct: 114 ECTFCSTGRQGFNRNLTVSEIIGQLWVANKALG-----------RDPKGDRIISNVVMMG 162 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL NFDNV +L+I D S+RR+T+STSG VP + R+ E V LA+SLHA Sbjct: 163 MGEPLANFDNVVTALNIMLDDSAYGLSRRRVTVSTSGMVPAMDRLREACPVALAVSLHAP 222 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ LR+++VPIN+KYP++ L+ AC+ Y + +TFEYVML G+NDS A L+ I+ Sbjct: 223 NDALRDVIVPINKKYPIKELMAACQRYLEKAPRDFVTFEYVMLDGVNDSVEHARQLLDIV 282 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + +P K NLIPFNP+P Y S + I F + + ++ Y R RG DI AACGQL Sbjct: 283 RDVPCKFNLIPFNPFPNSGYDTSKPEAIRRFRDVLMQADYVVTTRKTRGDDIDAACGQLA 342 Query: 367 SLSK-RIPKVPRQEMQ 381 + + + R ++ Sbjct: 343 GKVQDKTRRTERNKVM 358 >gi|261377750|ref|ZP_05982323.1| radical SAM enzyme, Cfr family [Neisseria cinerea ATCC 14685] gi|269146035|gb|EEZ72453.1| radical SAM enzyme, Cfr family [Neisseria cinerea ATCC 14685] Length = 366 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 157/377 (41%), Positives = 232/377 (61%), Gaps = 20/377 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + L +G R Q+ +WI+ G ++F M+D+++ +R+ LN Sbjct: 2 KTNLLNYDLQGLTRHFADMG----EKPFRAKQVMRWIHQSGAQNFGEMTDLAKSLRYKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + SI P+++ + S DGTRKWLL +G +ETV+IPE RGTLC+SSQVGC+ Sbjct: 58 EQASIDIPKLMMSQESSDGTRKWLL-----DVGTGNGVETVFIPESERGTLCISSQVGCA 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC TG Q RNL+A EI+ Q+ A +G V P R ISN+VMM Sbjct: 113 LECTFCSTGRQGFNRNLSAAEIIGQLWWANKAMG-----------VTPKNERVISNVVMM 161 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEP+ NF+NV +LSI D G S+RR+T+STSG VP + ++ + + V LA+SLHA Sbjct: 162 GMGEPMANFENVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDKLRDTMPVALAVSLHA 221 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++RN +VP+N+KYPL+ L+ AC+ Y + ITFEYVML G+ND + A LI++ Sbjct: 222 SNDEVRNKIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGVNDKAQHAYELIEL 281 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +K +P K NLIPFNP+P Y S+ ++I F + ++++G+ +R RG DI AACGQL Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYERSNNENIRIFIDILQQAGFVVTVRKTRGDDIDAACGQL 341 Query: 366 KSLSKRIPKVPRQEMQI 382 + + ++ QI Sbjct: 342 AGQVQDKTRRQQKWQQI 358 >gi|54294410|ref|YP_126825.1| hypothetical protein lpl1479 [Legionella pneumophila str. Lens] gi|81368632|sp|Q5WWH4|RLMN_LEGPL RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|53754242|emb|CAH15719.1| hypothetical protein lpl1479 [Legionella pneumophila str. Lens] Length = 382 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 171/374 (45%), Positives = 228/374 (60%), Gaps = 19/374 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ +L E L+ R Q+++WI+ GIRDF M+++ + +R+ L Sbjct: 4 QKVNLLNYNYLQLRELLMAW----DEKPFRAQQLFQWIHQVGIRDFAQMTNLGKVLRNKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +Q I PEIV + S DGT KWLL+ IETV+IPE +RGTLCVSSQVGC Sbjct: 60 SQLACIDLPEIVACQKSADGTHKWLLKLEC-----GNCIETVFIPEANRGTLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L CSFC T Q RNL+ EI+ QV LA L D G D +KI+N+VM Sbjct: 115 ALNCSFCSTAKQGFNRNLSTAEIIGQVWLAARELSDNDGTHD----------KKITNVVM 164 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV +++I D + SKRR+TLSTSG +P + R+ E V LA+SLH Sbjct: 165 MGMGEPLLNFDNVVSAMNIMMDDLAYGLSKRRVTLSTSGVIPEMERLREVSPVALAVSLH 224 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +++LRN LVPIN+KYPL LI C+ Y R++TFEYVMLKG+ND P A LIK Sbjct: 225 APTDELRNELVPINKKYPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIK 284 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L +PAK+NLIPFNP+P +Y S ++ I F + + + G ++ R RG DI AACGQ Sbjct: 285 LLHNVPAKVNLIPFNPFPLTQYQRSSRETIDAFRDKLMKHGINTITRKTRGDDIDAACGQ 344 Query: 365 LKSLSKRIPKVPRQ 378 L K ++ Sbjct: 345 LAGEVKDKTSRSQR 358 >gi|145299533|ref|YP_001142374.1| ribosomal RNA large subunit methyltransferase N [Aeromonas salmonicida subsp. salmonicida A449] gi|205829709|sp|A4SP04|RLMN_AERS4 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|142852305|gb|ABO90626.1| predicted Fe-S-cluster redox enzyme [Aeromonas salmonicida subsp. salmonicida A449] Length = 368 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 159/382 (41%), Positives = 213/382 (55%), Gaps = 28/382 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+ + +++G R QI KWIY G DF M+++++ +R L Sbjct: 6 KTNLLDLDRDAMRAFFVELG----EKPFRADQIMKWIYHFGCDDFDQMNNVNKVLRERLK 61 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I PE+ E+ S DGT KW L+ G E+ETVYIPE+ R TLCVSSQVGC+ Sbjct: 62 AIAEIRAPEVSREQRSSDGTIKWALQV------GGQEVETVYIPEEDRATLCVSSQVGCA 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G R I+N+VMM Sbjct: 116 LACKFCSTAQQGFNRNLKVSEIIGQVWRAAKIVG---------------GKRPITNVVMM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N NV ++ + D G SKRR+T+STSG VP + +G++I V LAISLHA Sbjct: 161 GMGEPLLNLANVIPAMRLMMDDFGYGISKRRVTISTSGVVPALDILGDQIDVALAISLHA 220 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNLI 303 ++ LR+ ++PIN KY +E + R Y SN R+T EYV+L IND + A L Sbjct: 221 PNDKLRSEIMPINDKYNIEDFLAGVRRYLAKSNANGGRVTVEYVLLDHINDDMQHAHELA 280 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+LK P+KINLIPFNP+PG Y I FS+ + G++ +R RG DI AACG Sbjct: 281 KVLKDTPSKINLIPFNPFPGNPYGKPSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAACG 340 Query: 364 QLKSLS-KRIPKVPRQEMQITG 384 QL R + + MQ G Sbjct: 341 QLVGEVIDRTKRTMKNRMQQDG 362 >gi|332141967|ref|YP_004427705.1| ribosomal RNA large subunit methyltransferase N [Alteromonas macleodii str. 'Deep ecotype'] gi|327551989|gb|AEA98707.1| ribosomal RNA large subunit methyltransferase N [Alteromonas macleodii str. 'Deep ecotype'] Length = 372 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 162/384 (42%), Positives = 226/384 (58%), Gaps = 22/384 (5%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K +L+ + RE L ++G R Q+ KWIY G+ DF+ MS++++ +R + Sbjct: 1 MAKTNLLNLNREGLRNFFKEMG----EKPFRADQVMKWIYQHGVSDFEEMSNLNKNLRAM 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L ++ I PEI + + DGT K+ L G E+E+V+IPE R TLCVSSQVG Sbjct: 57 LIENCEIKAPEIAYFQEASDGTIKFALTLE-----GGQEVESVWIPETDRATLCVSSQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L C+FC T Q RNL+ EI+ QV + LG + S R I+N+V Sbjct: 112 CALECTFCSTAQQGFNRNLSVSEIIGQVWRVATFLG----------LSKDSSKRPITNVV 161 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + +G++I V LAISL Sbjct: 162 MMGMGEPLLNLKNVVPAMDIMLDDFGFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISL 221 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPRDALN 301 HA +++LRN +VP+N+KY +E + R Y S N R+T EYVML INDS A Sbjct: 222 HAPTDELRNEIVPVNKKYNIEAFLAGVRRYLAKSKANQGRVTVEYVMLSNINDSTEQAHQ 281 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L K+LK P+KINLIPFNP+PG Y CS I FS+ + G+++ +R RG DI AA Sbjct: 282 LAKVLKDTPSKINLIPFNPYPGSPYTCSSNSRIDRFSKVLMEYGFTTVVRKTRGDDIDAA 341 Query: 362 CGQL-KSLSKRIPKVPRQEMQITG 384 CGQL + R ++ +++++ Sbjct: 342 CGQLVGDVVDRTKRLLKKQVKGEA 365 >gi|294084982|ref|YP_003551742.1| hypothetical protein SAR116_1415 [Candidatus Puniceispirillum marinum IMCC1322] gi|292664557|gb|ADE39658.1| hypothetical protein SAR116_1415 [Candidatus Puniceispirillum marinum IMCC1322] Length = 372 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 204/380 (53%), Positives = 267/380 (70%), Gaps = 18/380 (4%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 ++ +L+G+ + LEE ++ G+P + R QIW+W++ G+ +F MSD+ + VR L Sbjct: 9 QRINLLGLSQTALEEQIIAAGLP----KFRAKQIWRWVWRHGLTNFDEMSDLGKPVREQL 64 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + P + S DGT KWLLRFP E E VYIP+K+RGTLC+SSQVGC Sbjct: 65 ATMYKADRPAVSQRLNSKDGTIKWLLRFPD-----GNEAEAVYIPDKTRGTLCISSQVGC 119 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +LTCSFC+TGTQKLVRNLT +EI QV+LA L D+P + GR+++NIV+ Sbjct: 120 TLTCSFCHTGTQKLVRNLTVDEICGQVMLAMDELADWPAGRN---------GRRLTNIVL 170 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N++NV +++ I G++ SKRRITLSTSG VP I R GEE+GV LAISLH Sbjct: 171 MGMGEPLFNYENVAEAMRIIMSGEGVAVSKRRITLSTSGVVPEIKRAGEELGVNLAISLH 230 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++LR+ LVPINRKY L LI+ACR+YPGLSNARRIT+EYVML GINDS D L+ Sbjct: 231 ATRDELRDELVPINRKYKLAALIEACRNYPGLSNARRITWEYVMLDGINDSDEDCRQLLA 290 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 ++KGIP+K+NLIPFNPWPG Y+CS I F++ + ++GY+SP+RTPRG DILAACGQ Sbjct: 291 LIKGIPSKLNLIPFNPWPGSPYVCSKGDRIDAFAKRVLKAGYASPVRTPRGRDILAACGQ 350 Query: 365 LKSLSKRIPKVPRQEMQITG 384 LKS S+RIP+ + + T Sbjct: 351 LKSASQRIPRHKKAKTTETA 370 >gi|78484965|ref|YP_390890.1| hypothetical protein Tcr_0620 [Thiomicrospira crunogena XCL-2] gi|123741643|sp|Q31I07|RLMN_THICR RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|78363251|gb|ABB41216.1| radical SAM enzyme, Cfr family [Thiomicrospira crunogena XCL-2] Length = 370 Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 163/379 (43%), Positives = 219/379 (57%), Gaps = 21/379 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K L+GM R EL E IG R +Q+ KWI+ G+ DF+ M++IS+ +R L Sbjct: 7 DKVDLLGMDRAELTEFFASIG----EKPFRAAQVMKWIHQFGVSDFEEMTNISKSLREKL 62 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 ++ I P+IV E+ S DGT KWLL + +E V+IPEKSRGTLC+SSQVGC Sbjct: 63 SKTALIRTPKIVSEQRSADGTIKWLLE-----VDNHNCVEAVFIPEKSRGTLCISSQVGC 117 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L CSFC TG Q RNL EI+ Q+ +A LG P R ISN+V Sbjct: 118 ALECSFCSTGQQGFNRNLENWEIVAQMWVANKALG-----------CKPKEERIISNVVF 166 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N + + I D SKRR+T+ST+G VP I ++ E + V LAISLH Sbjct: 167 MGMGEPLLNVKHTFPTARILMDDNAYGLSKRRVTISTAGVVPAIDKIKESLDVSLAISLH 226 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALNLI 303 A +N LR+ LVPIN+KYPLE+L+ A Y ++++ +T EYVML +ND A LI Sbjct: 227 APNNALRDELVPINKKYPLEVLMPALHRYVEGGHSKKHVTVEYVMLDHVNDRLEHAQQLI 286 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++L +P K+NLIPFNP+P +Y S + F + + +G + +R RG DI AACG Sbjct: 287 ELLGDLPCKVNLIPFNPFPNTDYKRSSNNAVHRFKDALMEAGVNCTVRRTRGDDIDAACG 346 Query: 364 QLKSLSKRIPKVPRQEMQI 382 QL K K Q + + Sbjct: 347 QLAGKVKDRTKRTLQTVNL 365 >gi|117619957|ref|YP_856292.1| hypothetical protein AHA_1756 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|205829708|sp|A0KJ41|RLMN_AERHH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|117561364|gb|ABK38312.1| radical SAM enzyme, Cfr family [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 367 Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 159/382 (41%), Positives = 214/382 (56%), Gaps = 28/382 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+ + +++G R Q+ KWIY G DF M+++++ +R L Sbjct: 5 KTNLLDLDRDAMRAFFVELG----EKPFRADQVMKWIYHFGCDDFDQMNNVNKVLRERLK 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I PE+ E+ S DGT KW L+ G E+ETVYIPE+ R TLCVSSQVGC+ Sbjct: 61 AIAEIRAPEVSREQRSSDGTIKWALQV------GGQEVETVYIPEEDRATLCVSSQVGCA 114 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G R I+N+VMM Sbjct: 115 LECKFCSTAQQGFNRNLKVSEIIGQVWRAAKIVG---------------GKRPITNVVMM 159 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N NV ++ + D G SKRR+T+STSG VP + +G++I V LAISLHA Sbjct: 160 GMGEPLLNLANVVPAMRLMMDDFGYGISKRRVTISTSGVVPALDMLGDQIDVALAISLHA 219 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNLI 303 ++ LR+ ++PIN KY +E + R Y G SN R+T EYV+L IND + A L Sbjct: 220 PNDKLRSEIMPINDKYNIEEFLAGVRRYLGKSNANGGRVTVEYVLLDHINDDMQHAHELA 279 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+LK P+KINLIPFNP+PG Y I FS+ + G++ +R RG DI AACG Sbjct: 280 KVLKDTPSKINLIPFNPFPGNPYGKPSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAACG 339 Query: 364 QLKSLS-KRIPKVPRQEMQITG 384 QL R + + MQ G Sbjct: 340 QLVGEVIDRTKRTMKNRMQQDG 361 >gi|304398588|ref|ZP_07380460.1| radical SAM enzyme, Cfr family [Pantoea sp. aB] gi|304353799|gb|EFM18174.1| radical SAM enzyme, Cfr family [Pantoea sp. aB] Length = 389 Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 162/383 (42%), Positives = 221/383 (57%), Gaps = 23/383 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+++ E L +G R Q+ KWIY DF+ M+DI++++R+ L Sbjct: 21 QKINLLDLNRQQMREFFLSLG----EKPFRADQVMKWIYHYCCDDFEQMTDINKKLRNRL 76 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PE+ +E S DGT KW +R + +ETVYIPE R TLCVSSQVGC Sbjct: 77 MELTEIRAPEVAEEMRSTDGTIKWAIRVGDQL------VETVYIPEGDRATLCVSSQVGC 130 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNL EI+ QV A ++G + R I+N+VM Sbjct: 131 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKITGQRPITNVVM 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 181 MGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 240 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++ LR+ +VPIN+KY +E + A + Y SNA R+T EYV+L +NDS DA L Sbjct: 241 AANDKLRDDIVPINKKYNIETFLAAVKRYIAKSNANQGRVTIEYVLLDHVNDSTDDAHEL 300 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK P KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AAC Sbjct: 301 AALLKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTTIVRKTRGDDIDAAC 360 Query: 363 GQLKSLS-KRIPKVPRQEMQITG 384 GQL R + R +M Sbjct: 361 GQLAGEVIDRTKRTMRIKMAGEA 383 >gi|56551928|ref|YP_162767.1| Cfr family radical SAM enzyme [Zymomonas mobilis subsp. mobilis ZM4] gi|81355066|sp|Q5NNQ4|RLMN_ZYMMO RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|56543502|gb|AAV89656.1| radical SAM enzyme, Cfr family [Zymomonas mobilis subsp. mobilis ZM4] Length = 391 Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 190/372 (51%), Positives = 259/372 (69%), Gaps = 16/372 (4%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + L+G+ RE++ AL G+ ++ ++RT Q+W W+Y RG F GM+DI++ +R L Sbjct: 27 RIDLLGLSREDIRAALKSKGLDEKQAKLRTKQLWHWMYNRGAVAFDGMTDIAKTMRPWLA 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +HF+I PE+V +IS DGTRKWLL+ + E V+IP+ RGTLC+SSQ+GC+ Sbjct: 87 EHFAISRPEVVTMQISTDGTRKWLLKT-----DDGYDYEMVFIPDADRGTLCISSQIGCT 141 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC TGT +LVRNLT EI+ Q++LAR L ++P + GR ++N+VMM Sbjct: 142 LNCRFCNTGTMRLVRNLTVGEIVGQIMLARDSLDEWPSKPE---------GRLLTNVVMM 192 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV+ +L + D G++ S+RRITLSTSG VP +AR GEEIGV LA+SLHA Sbjct: 193 GMGEPLYNFDNVRDALKLVMDGDGIALSRRRITLSTSGVVPMMARAGEEIGVNLAVSLHA 252 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V+ +R+ +VPIN+KY ++ L+ AC YPG++NARRITFEYVMLK NDS DA L+++ Sbjct: 253 VTKVVRDEIVPINKKYGIDELLAACAAYPGVNNARRITFEYVMLKDKNDSEEDAHELVRL 312 Query: 306 LK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 L+ +PAK+NLIPFNPWP Y CS + I FSE + +G S+P+R RG DI+AACG Sbjct: 313 LQYYRLPAKVNLIPFNPWPNSPYECSTPERIARFSEIVFNAGISAPVRRTRGQDIMAACG 372 Query: 364 QLKSLSKRIPKV 375 QLKS ++R K Sbjct: 373 QLKSAAERQSKR 384 >gi|91775976|ref|YP_545732.1| hypothetical protein Mfla_1623 [Methylobacillus flagellatus KT] gi|123078840|sp|Q1H0U6|RLMN_METFK RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|91709963|gb|ABE49891.1| 23S rRNA m(2)A-2503 methyltransferase [Methylobacillus flagellatus KT] Length = 362 Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 159/378 (42%), Positives = 220/378 (58%), Gaps = 20/378 (5%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+ + L E IG R Q+ +W++ G+ DF M+DI++ +R L + Sbjct: 3 VNLLNFNQAALAEYFQGIG----EKPFRAKQMMRWMHHFGVSDFGEMTDIAKALREKLAK 58 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + P + E+IS DGTRKWL+ +G +ETV+IPE RGTLCVSSQVGC+L Sbjct: 59 EAVVAPPSVHLEQISEDGTRKWLI-----DVGAGNGVETVFIPEDDRGTLCVSSQVGCAL 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC TG Q RNL+ EI+ Q+ +A LG P R ISN+VMMG Sbjct: 114 DCTFCSTGRQGFNRNLSVSEIIGQLWVANKALG-----------RDPKGDRIISNVVMMG 162 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL NFDNV +++I D S+RR+TLSTSG VP + R+ EE V LA+SLHA Sbjct: 163 MGEPLANFDNVVAAMNIMLDDSAYGLSRRRVTLSTSGMVPAMDRLREECPVALAVSLHAP 222 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ LR+ +VPINRKYP+ L+ AC+ Y + +TFEYVML G+ND+ A L+ I+ Sbjct: 223 NDALRDEIVPINRKYPIAQLMAACQRYLEKAPRDFVTFEYVMLDGVNDTAEHARQLLNIV 282 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + +P K NLIPFNP+P Y S +I F + + ++GY R RG DI AACGQL Sbjct: 283 QDVPCKFNLIPFNPFPNSGYDTSKPDNIRRFRDILMQAGYVVTTRKTRGEDIDAACGQLA 342 Query: 367 SLSKRIPKVPRQEMQITG 384 + K + +++ Sbjct: 343 GKVQDKTKRSLRRIKVEA 360 >gi|303252097|ref|ZP_07338266.1| hypothetical protein APP2_1072 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307248296|ref|ZP_07530322.1| hypothetical protein appser2_12750 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302649079|gb|EFL79266.1| hypothetical protein APP2_1072 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855230|gb|EFM87407.1| hypothetical protein appser2_12750 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 393 Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 156/377 (41%), Positives = 218/377 (57%), Gaps = 22/377 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+E+ E ++G R Q+ KWIY G +F MS+I++ +R L Sbjct: 25 EKINLMNLTRKEMRELFAEMG----EKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKL 80 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q I PE+ E+ S DGT KW ++ +IETVYIPE R TLCVSSQVGC Sbjct: 81 KQIAEIKAPEVSVEQRSSDGTIKWAMQVGD------QQIETVYIPEDDRATLCVSSQVGC 134 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNLT EI+ QV A ++G+F + R I+N+VM Sbjct: 135 ALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 184 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D SKRR+TLST+G VP + + E+I V LAISLH Sbjct: 185 MGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKIDVALAISLH 244 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ ++PIN+KY +EML+D+ Y +SNA ++T EYV+L +ND A L Sbjct: 245 APNDELRDEIMPINKKYNIEMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQL 304 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+P Y S + F + + G++ +R RG DI AAC Sbjct: 305 AEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAAC 364 Query: 363 GQLKSLSKRIPKVPRQE 379 GQL K ++ Sbjct: 365 GQLAGDVIDRTKRTMEK 381 >gi|261494121|ref|ZP_05990624.1| radical SAM enzyme, Cfr family [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496038|ref|ZP_05992448.1| radical SAM enzyme, Cfr family [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308288|gb|EEY09581.1| radical SAM enzyme, Cfr family [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310287|gb|EEY11487.1| radical SAM enzyme, Cfr family [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 415 Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 158/378 (41%), Positives = 221/378 (58%), Gaps = 23/378 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+E+ E ++G R Q+ KWIY G +F MS+I++ +R L Sbjct: 47 EKINLLNLNRQEMRELFAEMG----EKPFRADQLMKWIYHFGEENFDNMSNINKVLREKL 102 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PE+ E+ S DGT KW ++ +IETVYIPE R TLCVSSQVGC Sbjct: 103 KRIAEIKAPEVAVEQRSADGTIKWAMQVGD------QQIETVYIPEDDRATLCVSSQVGC 156 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNL+ EI+ QV A ++G+F + R I+N+VM Sbjct: 157 ALACTFCSTAQQGFNRNLSVAEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 206 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D SKRR+TLSTSG VP + ++ E+I V LAISLH Sbjct: 207 MGMGEPLLNMNNVIPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKMREQIDVALAISLH 266 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ LVPIN+KY ++ML+D+ Y +SNA ++T EYVML +NDS A L Sbjct: 267 APNDELRDELVPINKKYNIKMLMDSVNKYLEVSNANHGKVTIEYVMLDHVNDSTDHAHQL 326 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+P Y S + F + + G++ +R RG DI AAC Sbjct: 327 AEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVTVRKTRGDDIDAAC 386 Query: 363 GQLKSLS-KRIPKVPRQE 379 GQL R + + Sbjct: 387 GQLAGDVIDRTKRTLEKR 404 >gi|239997032|ref|ZP_04717556.1| hypothetical protein AmacA2_21513 [Alteromonas macleodii ATCC 27126] Length = 372 Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 163/384 (42%), Positives = 226/384 (58%), Gaps = 22/384 (5%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K +L+ + RE L ++G R Q+ KWIY GI DF+ MS++++ +R + Sbjct: 1 MAKTNLLNLNREGLRNFFKEMG----EKPFRADQVMKWIYQHGISDFEEMSNLNKNLRAM 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L ++ I PEI + + DGT K+ L G E+E+V+IPE R TLCVSSQVG Sbjct: 57 LIENCEIKAPEIAYFQEASDGTIKFALTLE-----GGQEVESVWIPETDRATLCVSSQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L C+FC T Q RNL+ EI+ QV + LG + S R I+N+V Sbjct: 112 CALECTFCSTAQQGFNRNLSVSEIIGQVWRVATFLG----------LSKDSSKRPITNVV 161 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + +G++I V LAISL Sbjct: 162 MMGMGEPLLNLKNVVPAMDIMLDDFGFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISL 221 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPRDALN 301 HA +++LRN +VPIN+KY +E + R Y S N R+T EYVML INDS A Sbjct: 222 HAPTDELRNEIVPINKKYNIEAFLAGVRRYLAKSKANQGRVTVEYVMLSNINDSTEQAHQ 281 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L K+LK P+KINLIPFNP+PG Y CS I F++ + G+++ +R RG DI AA Sbjct: 282 LAKVLKDTPSKINLIPFNPYPGSPYTCSSNSRIDRFAKVLMEYGFTTVVRKTRGDDIDAA 341 Query: 362 CGQL-KSLSKRIPKVPRQEMQITG 384 CGQL + R ++ +++++ Sbjct: 342 CGQLVGDVVDRTKRMLKKQVKGEA 365 >gi|313201450|ref|YP_004040108.1| radical sam enzyme, cfr family [Methylovorus sp. MP688] gi|312440766|gb|ADQ84872.1| radical SAM enzyme, Cfr family [Methylovorus sp. MP688] Length = 367 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 158/376 (42%), Positives = 219/376 (58%), Gaps = 21/376 (5%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+ + +L E +G R Q+ +W++ G+ DF M+DI++ +R L Sbjct: 3 VNLLNYSQPQLAEYFHGLG----EKPFRAKQLMRWMHHFGVHDFDQMTDIAKSLRDKLKD 58 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I P I E+IS DGTRKWL+ G +ETV+IPE RGTLCVSSQVGC+L Sbjct: 59 QAEITPPGIKLEQISEDGTRKWLI-----DAGTGNGVETVFIPEAERGTLCVSSQVGCAL 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC TG Q RNL+ EI+ Q+ +A LG P R ISN+VMMG Sbjct: 114 ECTFCSTGRQGFNRNLSVSEIIGQLWVANKALG-----------RDPKGDRIISNVVMMG 162 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL NFDNV +L+I D S+RR+T+STSG VP + R+ E V LA+SLHA Sbjct: 163 MGEPLANFDNVVTALNIMLDDSAYGLSRRRVTVSTSGMVPAMDRLREACPVALAVSLHAP 222 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ LR+++VPIN+KYP++ L+ AC+ Y + +TFEYVML G+NDS A L+ I+ Sbjct: 223 NDALRDVIVPINKKYPIKELMAACQRYLEKAPRDFVTFEYVMLDGVNDSVEHARQLLDIV 282 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + +P K NLIPFNP+P Y S + I F + + ++ Y R RG DI AACGQL Sbjct: 283 RDVPCKFNLIPFNPFPNSGYDTSKPEAIRRFRDVLMQADYVVTTRKTRGDDIDAACGQLA 342 Query: 367 SLSK-RIPKVPRQEMQ 381 + + + R ++ Sbjct: 343 GKVQDKTRRTERNKVM 358 >gi|71908601|ref|YP_286188.1| hypothetical protein Daro_2988 [Dechloromonas aromatica RCB] gi|123760407|sp|Q47BR3|RLMN_DECAR RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|71848222|gb|AAZ47718.1| 23S rRNA m(2)A-2503 methyltransferase [Dechloromonas aromatica RCB] Length = 364 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 152/369 (41%), Positives = 215/369 (58%), Gaps = 20/369 (5%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+ E L + G R Q+ +WI+ G+ DF M+DI++ +R L Sbjct: 3 VNLLDFDGESLTAWFAEQG----EKPFRAKQVLRWIHRSGVADFDAMTDIAKSLREKLKA 58 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + P +V +K+S DGTRK+L+ +G +ETV+IPE RGTLC+S+Q GC+L Sbjct: 59 KAVVAPPAVVSDKLSDDGTRKFLI-----DVGNGNAVETVFIPEDDRGTLCISTQAGCAL 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC TG Q RNL+ EI+ Q+ A LG G E R ISN+V+MG Sbjct: 114 DCAFCSTGKQGFNRNLSVAEIIGQLWQANHALGAVHGDE-----------RVISNVVLMG 162 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL NF+N +L + D S+RRIT+STSG VP + R+G+E V LA+SLHA Sbjct: 163 MGEPLANFENSVAALKLMLDDNAYGLSRRRITVSTSGLVPVMDRLGDECPVALAVSLHAP 222 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ LR+ LVPIN+KYPL+ L+ AC+ Y + ITFEY+ML GIND+ A L+ ++ Sbjct: 223 NDKLRDQLVPINQKYPLKELMAACQRYLEKAPRDFITFEYIMLDGINDTDAHARELLALV 282 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 K + K NLIPFNP+PG + S + + F++ + ++G + R RG DI AACGQL Sbjct: 283 KSVHCKFNLIPFNPFPGSPFRRSPAERVRHFADILMQAGIVTTTRKTRGDDIDAACGQLA 342 Query: 367 SLSKRIPKV 375 + K Sbjct: 343 GQVQDKTKR 351 >gi|290476003|ref|YP_003468899.1| putative pyruvate formate lyase activating enzyme 2 [Xenorhabdus bovienii SS-2004] gi|289175332|emb|CBJ82135.1| putative pyruvate formate lyase activating enzyme 2 [Xenorhabdus bovienii SS-2004] Length = 392 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 158/378 (41%), Positives = 219/378 (57%), Gaps = 23/378 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ + + +G R Q+ KW+Y DF+ M+DI++ +R L Sbjct: 25 KINLLDLNRKQMRQFFIDMG----EKPFRADQVMKWMYHYCYDDFEQMTDINKVLRMKLQ 80 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 Q I PE+ +E+ S DGT KW + ++ETVYIPE R TLCVSSQVGC+ Sbjct: 81 QVAEIKAPEVAEEQRSADGTIKWAITVGD------QQVETVYIPEDERATLCVSSQVGCA 134 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + S R I+N+VMM Sbjct: 135 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------SLKSSGRRPITNVVMM 184 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ + V LAISLHA Sbjct: 185 GMGEPLLNLNNVVPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMVDVALAISLHA 244 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++D+R+ +VPINRKY +E + R Y SNA R+T EYVML +NDS A L Sbjct: 245 PTDDVRDEIVPINRKYNIEEFLAGVRRYLAKSNANQGRVTVEYVMLDHVNDSVEQAHQLA 304 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 + LK P+KINLIP+NP+PG Y S I FS+ + G+++ +R RG DI AACG Sbjct: 305 ECLKDTPSKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACG 364 Query: 364 QLKSLS-KRIPKVPRQEM 380 QL R + ++ + Sbjct: 365 QLAGDVIDRTKRTLKKRL 382 >gi|237654050|ref|YP_002890364.1| radical SAM protein [Thauera sp. MZ1T] gi|237625297|gb|ACR01987.1| radical SAM enzyme, Cfr family [Thauera sp. MZ1T] Length = 382 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 160/382 (41%), Positives = 217/382 (56%), Gaps = 14/382 (3%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M+ +L+ + L +G R Q+ +W++ G DF M+D+++ + Sbjct: 1 MSTPNPVNLLDFDVDGLVAWFAGLG----EKPFRARQVMRWMHHEGCDDFDAMTDVAKSL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L I P V + IS DGTRKWLL +G +ETV+IPE SRGTLCVSS Sbjct: 57 RAKLKDLAVIRPPVPVRDSISADGTRKWLL-----DVGNANAVETVFIPETSRGTLCVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLG----DFPGCEDIEGMVIPSVG 176 Q GC+L C+FC TG Q RNL+A EI+ Q+ LA LLG D G Sbjct: 112 QAGCALDCAFCSTGKQGFNRNLSAAEIIGQLWLANKLLGAARADAEEHATDLEAGEKDNG 171 Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236 R ISN+VMMGMGEPL NFDNV +L + D S+RR+T+STSG VP + R+ +E Sbjct: 172 RIISNVVMMGMGEPLANFDNVVTALRLMLDDHAYGLSRRRVTVSTSGIVPAMDRLRDECP 231 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 V LA+SLHA ++ LR+ LVPIN+KYPL L+ AC+ Y + +TFEYVML+G+NDS Sbjct: 232 VALAVSLHASNDALRDRLVPINQKYPLRELMAACQRYLERAPRDFVTFEYVMLEGVNDSD 291 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 A L+ +++ P K NLIPFNP+P + S + I F+ + +G + R RG Sbjct: 292 AHARELVALVRDTPCKFNLIPFNPFPDSGFQRSPAERIRRFAGILIDAGIVTTTRKTRGD 351 Query: 357 DILAACGQLKSLSK-RIPKVPR 377 D+ AACGQL + R + R Sbjct: 352 DVDAACGQLAGQVQDRTRRTVR 373 >gi|300704417|ref|YP_003746020.1| hypothetical protein RCFBP_20221 [Ralstonia solanacearum CFBP2957] gi|299072081|emb|CBJ43413.1| conserved protein of unknown function, predicted radical SAM enzyme [Ralstonia solanacearum CFBP2957] Length = 383 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 151/378 (39%), Positives = 218/378 (57%), Gaps = 18/378 (4%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN + +L+ + L +G R Q+ +WI+ G DF M+D+++ + Sbjct: 1 MNDM--VNLLDFDAQGLLAYCESLG----EKSFRAKQLQRWIHQSGAADFGEMTDLAKSL 54 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L +I P ++ + +S DGTRKWL+ +G +ETVYIPE++RGTLCVSS Sbjct: 55 REKLATRATIQAPAVISDHLSSDGTRKWLV-----DVGAGNAVETVYIPEETRGTLCVSS 109 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC++ C FC TG Q RNL+ EI+ Q+ +A + G P R I+ Sbjct: 110 QAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLWMAEFAMRKQLGR-------GPKDDRVIT 162 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+D V ++ + D S+RR+TLSTSG VP + R+ ++ V LA Sbjct: 163 NVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSHDLPVALA 222 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++ LR++LVP+N+KYPL L+ ACR Y + ITFEY ML G+NDS A Sbjct: 223 VSLHASNDALRDVLVPLNKKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDSVEHAR 282 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L++++ +P K NLIPFNP+P S+ + I FS+ + +G + IR RG DI A Sbjct: 283 ELLRVVADVPCKFNLIPFNPFPESGLKRSNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDA 342 Query: 361 ACGQLKSLSKRIPKVPRQ 378 ACGQL K ++ + Sbjct: 343 ACGQLAGEVKDRTRLAER 360 >gi|326405176|ref|YP_004285258.1| ribosomal RNA large subunit methyltransferase N [Acidiphilium multivorum AIU301] gi|325052038|dbj|BAJ82376.1| ribosomal RNA large subunit methyltransferase N [Acidiphilium multivorum AIU301] Length = 394 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 186/365 (50%), Positives = 249/365 (68%), Gaps = 18/365 (4%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + L+G+ REEL A+ +IG R Q+W WIY +G+ DF M++I++ +R L Sbjct: 41 RRDLVGLSREELAAAMAEIG----EQPFRAKQLWHWIYHQGVTDFAAMANIAKPLRAKLA 96 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE--KSRGTLCVSSQVG 123 + F+I PE+ + +S D TRK L RF +ETVYIP+ + RG +C+SSQVG Sbjct: 97 ERFAIGRPEVAADHLSADETRKMLFRFRDH-----EAVETVYIPDVTEDRGAVCLSSQVG 151 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L+C FC+TGTQ+L RNL+A EI+ Q + R G++P + R +S IV Sbjct: 152 CTLSCRFCHTGTQRLTRNLSAAEIVGQFMAMRDAYGEWPSPKG-------ETPRLLSTIV 204 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 +MGMGEPL N++NV K++ I D G+ S+RRITLSTSG VP + R G E+GV LA+SL Sbjct: 205 LMGMGEPLYNYENVAKAMKIVMDGEGIGLSRRRITLSTSGVVPMMDRAGAELGVNLAVSL 264 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HAV++D+R+++VP+NRKY + LI ACR YPG SNARRITFEYVMLKGINDS DA L+ Sbjct: 265 HAVTDDVRDVIVPLNRKYNIAELIAACRRYPGASNARRITFEYVMLKGINDSEADARRLV 324 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +++ GIPAK+NLIPFNPWPG Y S I F+ + +GY++P+RTPRG DILAACG Sbjct: 325 ELIDGIPAKVNLIPFNPWPGSTYETSSGNAIRRFANIVMDAGYAAPVRTPRGQDILAACG 384 Query: 364 QLKSL 368 QLKS Sbjct: 385 QLKSK 389 >gi|255292044|dbj|BAH90525.1| conserved hypothetical protein [uncultured bacterium] gi|255292512|dbj|BAH89627.1| radical SAM enzyme [uncultured bacterium] gi|255293032|dbj|BAH90127.1| radical SAM enzyme [uncultured bacterium] Length = 364 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 161/372 (43%), Positives = 216/372 (58%), Gaps = 22/372 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ R LE +G R Q+ +W++ G DF M+++S+ +R L Sbjct: 7 KTNLLGLDRPGLEGLFASLG----EKPFRAGQVLQWLHAHGCEDFAAMTNLSKALRERLA 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 Q I P++ + ++ DGTRKWL + P G IETVYIPE RGTLCVSSQVGC Sbjct: 63 QESQIAAPQVQADHLASDGTRKWLFQLP-----GGSAIETVYIPETRRGTLCVSSQVGCQ 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC T Q RNL +EI+ Q+ A LL P E + I+N+V M Sbjct: 118 LNCSFCQTARQGFNRNLGVDEIVGQIWAASRLLPPHPARE-----------KPITNVVFM 166 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ + D + S RR+T+STSG VP I R+ EE V LA+SLHA Sbjct: 167 GMGEPLLNFDNVVAAIRVMLDDLAYGLSWRRVTVSTSGVVPMIDRLREECPVALAVSLHA 226 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + LR LVP+NR+YP+++L+DACR Y RRITFEY +L G+ND P A L K+ Sbjct: 227 PDDALRAELVPLNRRYPIDVLLDACRRYVAGDQRRRITFEYTLLAGVNDHPGQAKALAKL 286 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L +P+K+NLIP+NP G Y S + + F + + R G + +R RG DI ACGQL Sbjct: 287 LARVPSKVNLIPYNPVAGLPYATSPPQAVAQFRDELLRHGLVATVRKTRGDDIAGACGQL 346 Query: 366 KSLSKRIPKVPR 377 +P+ R Sbjct: 347 AGQV--LPRARR 356 >gi|88799903|ref|ZP_01115475.1| radical SAM enzyme, Cfr family protein [Reinekea sp. MED297] gi|88777334|gb|EAR08537.1| radical SAM enzyme, Cfr family protein [Reinekea sp. MED297] Length = 386 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 152/374 (40%), Positives = 219/374 (58%), Gaps = 20/374 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+GM +E + R R +Q+ KWI+ RG+ DF M+D+S+ +R L Sbjct: 7 KVNLLGMGMAAMERFFTE---ELGEKRFRATQVLKWIHQRGVDDFDDMTDVSKSLREKLK 63 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I PE+ +K S DGTRKW+++ P G +ETVYIPE RGTLCVSSQ+GC+ Sbjct: 64 AVAVIDAPEVTFKKFSKDGTRKWVMKMP-----GGSAVETVYIPEDDRGTLCVSSQIGCA 118 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q R+L+A EI+ Q+ +A + + R ++N+VMM Sbjct: 119 LDCSFCSTGKQGFNRDLSAAEIIGQLWVAARSWDEPGKKRE----------RHVTNVVMM 168 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N+DNV +++++ + SKRR+TLSTSG VP I + EE V +A+SLHA Sbjct: 169 GMGEPLLNYDNVVEAMNLMMEDNAYGLSKRRVTLSTSGVVPRILDLAEETDVSMALSLHA 228 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIK 304 ++ LRN LVP+N++Y L+ +DA Y +R+ T EY ++ +ND P A L+ Sbjct: 229 PNDALRNELVPLNKRYGLKQTLDAVNTYFARLPDKRVPTIEYTLINEVNDKPEHAHELVD 288 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L+ P KINLIPFNP+P Y I F + + ++GY+ +R RG DI AACGQ Sbjct: 289 LLRETPCKINLIPFNPFPNSGYERPSNNRIHRFKDILHQAGYNVTVRKTRGDDIDAACGQ 348 Query: 365 L-KSLSKRIPKVPR 377 L ++ + + R Sbjct: 349 LVGQVADKTRRSVR 362 >gi|148261683|ref|YP_001235810.1| radical SAM protein [Acidiphilium cryptum JF-5] gi|205829703|sp|A5G209|RLMN_ACICJ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|146403364|gb|ABQ31891.1| 23S rRNA m(2)A-2503 methyltransferase [Acidiphilium cryptum JF-5] Length = 390 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 186/365 (50%), Positives = 249/365 (68%), Gaps = 18/365 (4%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + L+G+ REEL A+ +IG R Q+W WIY +G+ DF M++I++ +R L Sbjct: 37 RRDLVGLSREELAAAMAEIG----EQPFRAKQLWHWIYHQGVTDFAAMANIAKPLRAKLA 92 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE--KSRGTLCVSSQVG 123 + F+I PE+ + +S D TRK L RF +ETVYIP+ + RG +C+SSQVG Sbjct: 93 ERFAIGRPEVAADHLSADETRKMLFRFRDH-----EAVETVYIPDVTEDRGAVCLSSQVG 147 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L+C FC+TGTQ+L RNL+A EI+ Q + R G++P + R +S IV Sbjct: 148 CTLSCRFCHTGTQRLTRNLSAAEIVGQFMAMRDAYGEWPSPKG-------ETPRLLSTIV 200 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 +MGMGEPL N++NV K++ I D G+ S+RRITLSTSG VP + R G E+GV LA+SL Sbjct: 201 LMGMGEPLYNYENVAKAMKIVMDGEGIGLSRRRITLSTSGVVPMMDRAGAELGVNLAVSL 260 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HAV++D+R+++VP+NRKY + LI ACR YPG SNARRITFEYVMLKGINDS DA L+ Sbjct: 261 HAVTDDVRDVIVPLNRKYNIAELIAACRRYPGASNARRITFEYVMLKGINDSEADARRLV 320 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +++ GIPAK+NLIPFNPWPG Y S I F+ + +GY++P+RTPRG DILAACG Sbjct: 321 ELIDGIPAKVNLIPFNPWPGSTYETSSGNAIRRFANIVMDAGYAAPVRTPRGQDILAACG 380 Query: 364 QLKSL 368 QLKS Sbjct: 381 QLKSK 385 >gi|296282660|ref|ZP_06860658.1| Fe-S-cluster redox protein [Citromicrobium bathyomarinum JL354] Length = 417 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 189/382 (49%), Positives = 258/382 (67%), Gaps = 13/382 (3%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + LIG+ + + E G+ + ++R+ Q++ W+Y RG+ +F+ M+DI++ +R L Sbjct: 29 RVDLIGLPKARIRELFEAAGLDAKAAKLRSKQVFHWLYHRGVTEFEAMTDIAKTMRPWLT 88 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + F I PE+V+ S DGTRKW+LR + E V+IP+ RGTLC+SSQVGC+ Sbjct: 89 ERFVIGRPEVVEAHHSTDGTRKWVLRT-----ADGNDFEMVFIPDADRGTLCISSQVGCT 143 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC------EDIEGMVIPSVGRKI 179 L C FC+TGT +LVRNLT EI+ QV+LAR LG++P E + S GR + Sbjct: 144 LNCRFCHTGTMRLVRNLTPGEIVGQVMLARDSLGEWPKGSMAGLDEVEDSAEYTSDGRLL 203 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 +NIV+MGMGEPL NFDNV+ ++ + D GL+ SKRRITLSTSG VP + R GEEIGV L Sbjct: 204 TNIVLMGMGEPLYNFDNVRDAMKLVMDGDGLALSKRRITLSTSGVVPMMERCGEEIGVNL 263 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHAV D+R+ +VP+N+KY +E L+ AC YPG SNARRITFEY+MLK NDS DA Sbjct: 264 AVSLHAVRKDIRDEIVPLNKKYGIEELLQACADYPGASNARRITFEYIMLKDKNDSDEDA 323 Query: 300 LNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 L+++LK +PAK+NLIPFNPWPG +Y S + I FS+ + G S+P+RTPRG D Sbjct: 324 RELVRLLKQYDLPAKVNLIPFNPWPGSDYETSLPERIRAFSDIVFEGGISAPVRTPRGRD 383 Query: 358 ILAACGQLKSLSKRIPKVPRQE 379 I AACGQLK+ +++ + R Sbjct: 384 IGAACGQLKTAAEKKSRAQRDR 405 >gi|212639614|ref|YP_002316134.1| ribosomal RNA large subunit methyltransferase N [Anoxybacillus flavithermus WK1] gi|212561094|gb|ACJ34149.1| Predicted Fe-S-cluster redox enzyme [Anoxybacillus flavithermus WK1] Length = 349 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 126/367 (34%), Positives = 202/367 (55%), Gaps = 25/367 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ M E+L+ + + G R +QI++W+Y + F+ M++I + +R L Sbjct: 2 KPSIYSMRLEDLQSWVEQQG----EKPFRATQIFEWLYKKRATSFEDMTNIPKALRERLA 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +HF I + + ++ S DGT K+L IETV + ++CV++QVGC Sbjct: 58 EHFVITTLKTLVQQTSKDGTMKFLFELHD-----GYSIETVLMRHDYGNSICVTTQVGCR 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC + L RNL A EI+ QV+ + L + ++S+IV+M Sbjct: 113 IGCTFCASTLGGLKRNLQAGEIVAQVVKVQKALDE--------------TNERVSSIVVM 158 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+D + K L I + GL R IT+STSG +P I + +E + + AISLH Sbjct: 159 GIGEPFDNYDELIKFLKIVNHPKGLHIGARHITVSTSGIIPKIYQFADENMQINFAISLH 218 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A + +LR+ L+PINR Y L L++A R+Y + R+TFEY + G+ND A L + Sbjct: 219 APNTELRSKLMPINRAYKLPELMEAVRYYIEKTGR-RVTFEYGLFGGVNDQIEHAEELAE 277 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 ++KG+ +NLIP N P Y+ + ++ I F + +K+ G + IR +G DI AACGQ Sbjct: 278 LIKGLKCHVNLIPVNYVPERNYVRTPREQIFAFEKTLKKHGINVTIRREQGHDIDAACGQ 337 Query: 365 LKSLSKR 371 L++ ++ Sbjct: 338 LRAKERK 344 >gi|85059741|ref|YP_455443.1| hypothetical protein SG1763 [Sodalis glossinidius str. 'morsitans'] gi|123752598|sp|Q2NS37|RLMN_SODGM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|84780261|dbj|BAE75038.1| conserved hypothetical protein [Sodalis glossinidius str. 'morsitans'] Length = 393 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 159/379 (41%), Positives = 212/379 (55%), Gaps = 23/379 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ M R++L E +G R Q+ KWIY DF M+DI++ +R L Sbjct: 25 QKLNLLDMNRQQLREFFSSMG----EKPFRADQVMKWIYHYCCDDFDQMTDINKHLRARL 80 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+ +E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC Sbjct: 81 KALAEIRAPEVAEEQRSADGTIKWAIKVGD------QQVETVYIPEDDRATLCVSSQVGC 134 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNL EI+ QV A ++G + R I+N+VM Sbjct: 135 ALQCTFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------AAKVTGQRPITNVVM 184 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 185 MGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALEKLGDMIDVALAISLH 244 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNL 302 A ++ +R+ +VPINRKY +E + A R Y SN R+T EYVML IND A L Sbjct: 245 APNDTIRDEIVPINRKYNIETFLSAVRCYLDKSNANKGRVTVEYVMLDHINDGTEHAHQL 304 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 LK P KINLIP+NP+PG Y S + F++ + +++ +R RG DI AAC Sbjct: 305 AACLKYTPCKINLIPWNPFPGAPYGRSSNSRVDRFAKVLMGYEFTTIVRKTRGDDIDAAC 364 Query: 363 GQLKSLS-KRIPKVPRQEM 380 GQL R + R+ M Sbjct: 365 GQLAGEVIDRTKRTLRKRM 383 >gi|186476180|ref|YP_001857650.1| radical SAM protein [Burkholderia phymatum STM815] gi|205829685|sp|B2JIV3|RLMN_BURP8 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|184192639|gb|ACC70604.1| radical SAM enzyme, Cfr family [Burkholderia phymatum STM815] Length = 382 Score = 454 bits (1169), Expect = e-126, Method: Composition-based stats. Identities = 151/382 (39%), Positives = 216/382 (56%), Gaps = 10/382 (2%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +L+ + L +G R Q+ +WI+ DF GM+D+++ + Sbjct: 1 MTSSPTVNLLDLDAAGLVAYCDSLG----EKPFRAKQLQRWIHQYNAADFDGMTDLAKSL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L SI P +V + IS DGTRKWL+ +G +ETVYIPE++RGTLCVSS Sbjct: 57 REKLKGRASITMPPVVSDHISSDGTRKWLV-----DVGNGNAVETVYIPEETRGTLCVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI- 179 Q GC++ C FC TG Q RNL EI+ Q+ +A L G G ++ Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLGTGEIIGQLRMAEFALRASRGTAGGRATGGDGKGERVV 171 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 +N+VMMGMGEPL N+D V ++ + D S+RR+TLSTSG VP + R+G ++ V L Sbjct: 172 TNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLPVAL 231 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA ++ LR+ LVP+N+KYPL L+ AC+ Y ++ ITFEY ML G+NDS A Sbjct: 232 AVSLHAPNDALRDELVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDSEAHA 291 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L+ + + +P K NLIPFNP+P L S + I F++ + +G + +R RG DI Sbjct: 292 RELLAVTRDVPCKFNLIPFNPFPESGLLRSKSEQIKRFAQVLMDAGVVTTVRKTRGDDID 351 Query: 360 AACGQLKSLSKRIPKVPRQEMQ 381 AACGQL K ++ + + Sbjct: 352 AACGQLAGAVKDRTRLAERTGK 373 >gi|113868341|ref|YP_726830.1| Fe-S-cluster redox protein [Ralstonia eutropha H16] gi|123032871|sp|Q0K959|RLMN_RALEH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|113527117|emb|CAJ93462.1| Predicted Fe-S-cluster redox enzyme [Ralstonia eutropha H16] Length = 384 Score = 454 bits (1169), Expect = e-126, Method: Composition-based stats. Identities = 156/378 (41%), Positives = 217/378 (57%), Gaps = 19/378 (5%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN L +L+ + + L ++G R Q+ +WI+ G F MSD+++ + Sbjct: 1 MNAL--VNLLDLDADALTAYCGELG----EKPFRARQLQRWIHHYGASRFDAMSDLAKSL 54 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L I P + + +S DGTRKWLL +G +ETVYIPE++RGTLCVSS Sbjct: 55 REKLATRAEIRAPAAITDHLSADGTRKWLL-----DVGQGNAVETVYIPEETRGTLCVSS 109 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC++ C FC TG Q RNL+ EI+ Q+ +A + + G P R IS Sbjct: 110 QAGCAVNCRFCSTGKQGFSRNLSTGEIIGQLWMAEFAMREQLGR-------GPKDDRVIS 162 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+D V ++ + D S+RR+TLSTSG VP + R+ +++ V LA Sbjct: 163 NVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSKDLPVALA 222 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++ LR++LVP+N+KYPL L+ ACR Y + ITFEY ML G+ND A Sbjct: 223 VSLHASNDALRDVLVPLNKKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDGVEHAR 282 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L+K++ +P K NLIPFNP+P S+ I F++ + +G + IR RG DI A Sbjct: 283 ELLKLVADVPCKFNLIPFNPFPESGLKRSNNDQIRRFAQVLMDAGIVTTIRKTRGDDIDA 342 Query: 361 ACGQLKSLSK-RIPKVPR 377 ACGQL K R V R Sbjct: 343 ACGQLAGEVKDRTRLVER 360 >gi|254513997|ref|ZP_05126058.1| radical SAM enzyme, Cfr family [gamma proteobacterium NOR5-3] gi|219676240|gb|EED32605.1| radical SAM enzyme, Cfr family [gamma proteobacterium NOR5-3] Length = 381 Score = 454 bits (1169), Expect = e-126, Method: Composition-based stats. Identities = 157/378 (41%), Positives = 218/378 (57%), Gaps = 22/378 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 ++ +L+GM R +LE+ L +G R R Q+ KW++ +G DF MS++ + +R L Sbjct: 12 ERINLLGMSRTQLEDFFLGLG----EKRFRAQQLMKWMHHQGECDFSAMSNLGKALRERL 67 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + P + + S DGTRKWL+R + G +ETV IP+ +R TLCVSSQVGC Sbjct: 68 AAIAEVRPPPVESQHDSSDGTRKWLVR-----VDGGGLVETVLIPDGNRATLCVSSQVGC 122 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 SL CSFC TG Q R+L+A EI+ QV LA + F GR ++N+VM Sbjct: 123 SLDCSFCSTGKQGFQRDLSAAEIIGQVWLAINSYDAFKS----------GNGRVVTNVVM 172 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP + ++ E LA+SLH Sbjct: 173 MGMGEPLLNFDNVVTAMDLMMDDLGYGISKRRVTLSTSGVVPALDKLAEVSEASLAVSLH 232 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPG--LSNARRITFEYVMLKGINDSPRDALNL 302 A +++LRN LVP+NR+YP+ L+D+ R Y R +T EY ++ G+ND P A L Sbjct: 233 APNDELRNQLVPVNRRYPIAQLLDSARRYIDAQKDKKRVVTIEYTLMAGVNDQPDQAREL 292 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +L P KINLIPFNP+P Y + F + + +G+ +RT RG DI AAC Sbjct: 293 ATLLADFPCKINLIPFNPFPNSGYERPSGNAVSRFWQVLVDAGFVVTVRTTRGDDIDAAC 352 Query: 363 GQL-KSLSKRIPKVPRQE 379 GQL + R + R Sbjct: 353 GQLVGDVVDRTRRSARHR 370 >gi|262371087|ref|ZP_06064409.1| cfr family radical SAM enzyme [Acinetobacter johnsonii SH046] gi|262313973|gb|EEY95018.1| cfr family radical SAM enzyme [Acinetobacter johnsonii SH046] Length = 411 Score = 454 bits (1169), Expect = e-126, Method: Composition-based stats. Identities = 165/391 (42%), Positives = 231/391 (59%), Gaps = 24/391 (6%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 N + K +L+GM R +LE+ +G + R Q+ KWI+ + DF M++IS ++R Sbjct: 26 NSVAKVNLLGMSRPQLEKFFEDMG----EKKFRAGQVMKWIHQFFVTDFAEMTNISGKLR 81 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG----TLC 117 L + I PE+V + S DGTRKW+ R G +ETV IP + R TLC Sbjct: 82 EKLEKLCEIKAPEVVHKNYSKDGTRKWVFRVGE---GEGSLVETVLIPAEHRSGLRRTLC 138 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 +SSQVGC+L CSFC TG Q R+L +EI+ Q+ +A + + E R Sbjct: 139 ISSQVGCALDCSFCSTGKQGFQRDLNPDEIIGQLWVANYSYMEDVPVAERE--------R 190 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 ++N+VMMGMGEPL N+D V S+ I D SKRR+TLSTSG VP I ++ ++I V Sbjct: 191 SVTNVVMMGMGEPLLNYDAVLSSMRIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDIDV 250 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL----SNARRITFEYVMLKGIN 293 LAISLHA +++LRN LVPIN+KYPL LI AC+ Y S + +T EYVML G+N Sbjct: 251 ALAISLHAPNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESARKHVTIEYVMLDGVN 310 Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353 D P A +IK+LK +P+KINLIPFNP+P Y S + I++F + + +G+ IR Sbjct: 311 DHPEHAQQMIKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQT 370 Query: 354 RGLDILAACGQL-KSLSKRIPKVPRQEMQIT 383 RG DI AACGQL ++ R + + + ++ Sbjct: 371 RGDDIDAACGQLVGQVADRTRRAEQWKKKVA 401 >gi|83310223|ref|YP_420487.1| Fe-S-cluster redox protein [Magnetospirillum magneticum AMB-1] gi|82945064|dbj|BAE49928.1| Predicted Fe-S-cluster redox enzyme [Magnetospirillum magneticum AMB-1] Length = 546 Score = 454 bits (1169), Expect = e-126, Method: Composition-based stats. Identities = 195/370 (52%), Positives = 255/370 (68%), Gaps = 19/370 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +LIG+ R++L + IG R Q+W W+Y RG DF M+ IS+ + L Sbjct: 176 KTNLIGLSRDQLIAEMASIG----EKPFRAKQLWHWMYNRGETDFAKMTSISKSMHGALA 231 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS--RGTLCVSSQVG 123 + + + P + E IS D TRKWLL+F E ETVYIP+ RG +C+S+QVG Sbjct: 232 ERYVVRRPGVTKELISADTTRKWLLKF-----DDGHEAETVYIPDADEERGAVCISTQVG 286 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+LTC FC+TGTQ LVRNL+A EI+ Q ++AR G++P +D GR++SNIV Sbjct: 287 CTLTCRFCHTGTQLLVRNLSAAEIVGQFMVARDSYGEWPTPDD--------GGRQLSNIV 338 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 +MGMGEPL NF+NV +L IA D G+ SKRRITLSTSG VP + GE +GV LA+SL Sbjct: 339 VMGMGEPLYNFENVATALEIAMDGEGIGISKRRITLSTSGVVPMMKECGERLGVNLAVSL 398 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HAV++++R+ ++PIN+KYPL+ L+ ACR YPG SNARRITFEY+MLKGINDS DA L+ Sbjct: 399 HAVTDEIRDRIMPINKKYPLKELMQACREYPGASNARRITFEYIMLKGINDSAADARALL 458 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K++KG+PAK NLIPFNPWPG E+ D K FS+ ++ +GYS+PIR PRG DILAACG Sbjct: 459 KLVKGLPAKFNLIPFNPWPGSEFDTPDIKTTKAFSDILQDAGYSAPIRMPRGRDILAACG 518 Query: 364 QLKSLSKRIP 373 QL+S S+R Sbjct: 519 QLRSESQRER 528 >gi|253988864|ref|YP_003040220.1| ribosomal RNA large subunit methyltransferase N [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780314|emb|CAQ83475.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 392 Score = 454 bits (1169), Expect = e-126, Method: Composition-based stats. Identities = 161/379 (42%), Positives = 219/379 (57%), Gaps = 22/379 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ + + +G R Q+ KWIY DF+ M+DI++ +R L Sbjct: 25 KINLLDLDRKQMRQFFVDMG----EKPFRADQVMKWIYHYCYDDFEQMTDINKTLRAKLQ 80 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 Q I PE+ +E+ S DGT KW + ++ETVYIPE R TLCVSSQVGC+ Sbjct: 81 QVAEIRAPEVAEEQRSADGTIKWAISVGD------QQVETVYIPEDDRATLCVSSQVGCA 134 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + S R I+N+VMM Sbjct: 135 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------SLKSSGRRPITNVVMM 184 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 185 GMGEPLLNLNNVVPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 244 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++D+R+ +VPINRKY +E + R Y SNA R+T EYVML INDS A L Sbjct: 245 PTDDIRDDIVPINRKYNIEQFLAGVRRYLAKSNANQGRVTVEYVMLDHINDSVEQAHQLA 304 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 + LK P+KINLIP+NP+PG Y S I F++ + G+++ +R RG DI AACG Sbjct: 305 ECLKDTPSKINLIPWNPFPGAPYGRSSNSRIDRFAKVLMGYGFTTIVRKTRGDDIDAACG 364 Query: 364 QLKSLSKRIPKVPRQEMQI 382 QL K ++ Q+ Sbjct: 365 QLAGDVIDRTKRTLKKRQL 383 >gi|165976692|ref|YP_001652285.1| hypothetical protein APJL_1285 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303250645|ref|ZP_07336842.1| hypothetical protein APP6_0233 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252906|ref|ZP_07534795.1| hypothetical protein appser6_14180 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307261750|ref|ZP_07543416.1| hypothetical protein appser12_13090 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307263937|ref|ZP_07545541.1| hypothetical protein appser13_13460 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|205829706|sp|B0BQK6|RLMN_ACTPJ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|165876793|gb|ABY69841.1| hypothetical protein APJL_1285 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302650633|gb|EFL80792.1| hypothetical protein APP6_0233 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859695|gb|EFM91719.1| hypothetical protein appser6_14180 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306868568|gb|EFN00379.1| hypothetical protein appser12_13090 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306870802|gb|EFN02542.1| hypothetical protein appser13_13460 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 393 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 155/377 (41%), Positives = 218/377 (57%), Gaps = 22/377 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+E+ E ++G R Q+ KWIY G +F MS+I++ +R L Sbjct: 25 EKINLMNLTRQEMRELFAEMG----EKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKL 80 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q I PE+ E+ S DGT KW ++ +IETVYIPE R TLCVSSQVGC Sbjct: 81 KQIAEIKAPEVSVEQRSSDGTIKWAMQVGD------QQIETVYIPEDDRATLCVSSQVGC 134 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNLT EI+ QV A ++G+F + R I+N+VM Sbjct: 135 ALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 184 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D SKRR+TLST+G VP + + E+I V LAISLH Sbjct: 185 MGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKIDVALAISLH 244 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ ++PIN+KY ++ML+D+ Y +SNA ++T EYV+L +ND A L Sbjct: 245 APNDELRDEIMPINKKYNIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQL 304 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+P Y S + F + + G++ +R RG DI AAC Sbjct: 305 AEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAAC 364 Query: 363 GQLKSLSKRIPKVPRQE 379 GQL K ++ Sbjct: 365 GQLAGDVIDRTKRTMEK 381 >gi|307246190|ref|ZP_07528272.1| hypothetical protein appser1_13950 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255171|ref|ZP_07536989.1| hypothetical protein appser9_14070 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259608|ref|ZP_07541333.1| hypothetical protein appser11_14070 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853125|gb|EFM85348.1| hypothetical protein appser1_13950 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862044|gb|EFM94020.1| hypothetical protein appser9_14070 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866544|gb|EFM98407.1| hypothetical protein appser11_14070 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 393 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 155/377 (41%), Positives = 218/377 (57%), Gaps = 22/377 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+E+ E ++G R Q+ KWIY G +F MS+I++ +R L Sbjct: 25 EKINLMNLTRKEMRELFAEMG----EKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKL 80 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q I PE+ E+ S DGT KW ++ +IETVYIPE R TLCVSSQVGC Sbjct: 81 KQIAEIKAPEVSVEQRSSDGTIKWAMQVGD------QQIETVYIPEDDRATLCVSSQVGC 134 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNLT EI+ QV A ++G+F + R I+N+VM Sbjct: 135 ALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 184 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D SKRR+TLST+G VP + + E+I V LAISLH Sbjct: 185 MGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKIDVALAISLH 244 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ ++PIN+KY ++ML+D+ Y +SNA ++T EYV+L +ND A L Sbjct: 245 APNDELRDEIMPINKKYNIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQL 304 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+P Y S + F + + G++ +R RG DI AAC Sbjct: 305 AEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAAC 364 Query: 363 GQLKSLSKRIPKVPRQE 379 GQL K ++ Sbjct: 365 GQLAGDVIDRTKRTMEK 381 >gi|73541777|ref|YP_296297.1| hypothetical protein Reut_A2089 [Ralstonia eutropha JMP134] gi|123732898|sp|Q46ZI0|RLMN_RALEJ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|72119190|gb|AAZ61453.1| Conserved hypothetical protein 48 [Ralstonia eutropha JMP134] Length = 384 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 154/378 (40%), Positives = 217/378 (57%), Gaps = 18/378 (4%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN L +L+ + + L ++G R Q+ +WI+ G F MSD+++ + Sbjct: 1 MNDL--VNLLDLDADALTAYCGELG----EKPFRARQLQRWIHQFGASRFDAMSDLAKSL 54 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L I P + + +S DGTRKWLL +G +ETVYIPE++RGTLCVSS Sbjct: 55 REKLATRAEIRSPAAITDNLSADGTRKWLL-----DVGNGNAVETVYIPEETRGTLCVSS 109 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC++ C FC TG Q RNLT EI+ Q+ +A + + G P R IS Sbjct: 110 QAGCAVNCRFCSTGKQGFSRNLTTGEIIGQLWMAEFAMREQLGR-------GPKDDRVIS 162 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+D V ++ + D S+RR+TLSTSG VP + R+ +++ V LA Sbjct: 163 NVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSKDLPVALA 222 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++ LR++LVP+N+KYPL L+ ACR Y + ITFEY ML G+ND A Sbjct: 223 VSLHASNDALRDVLVPLNKKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDGVEHAR 282 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L+K++ +P K NLIPFNP+P S+ I F++ + +G + IR RG DI A Sbjct: 283 ELLKLVADVPCKFNLIPFNPFPESGLKRSNNDQIRRFAQVLMDAGIVTTIRKTRGDDIDA 342 Query: 361 ACGQLKSLSKRIPKVPRQ 378 ACGQL K ++ + Sbjct: 343 ACGQLAGEVKDRTRLAER 360 >gi|46201028|ref|ZP_00207935.1| COG0820: Predicted Fe-S-cluster redox enzyme [Magnetospirillum magnetotacticum MS-1] Length = 375 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 195/368 (52%), Positives = 257/368 (69%), Gaps = 19/368 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +LIG+ R++L + IG R Q+W W+Y RG DF M+ IS+ + L Sbjct: 5 KINLIGLSRDQLIAEMAAIG----EKPFRAKQLWHWMYNRGETDFAKMTSISKSMHGALA 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE--KSRGTLCVSSQVG 123 + + + P++ E IS D TRKWLL+F E ETVYIP+ + RG +C+S+QVG Sbjct: 61 ERYVVRRPQMTKELISADTTRKWLLKF-----DDGHEAETVYIPDADEDRGAVCISTQVG 115 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+LTC FC+TGTQ LVRNLTA EI+ Q ++AR G++P +D GR++SNIV Sbjct: 116 CTLTCRFCHTGTQLLVRNLTAAEIVGQFMVARDSYGEWPTPDD--------GGRQLSNIV 167 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 +MGMGEPL NF+NV +L IA D G+ SKRRITLSTSG VP + GE +GV LA+SL Sbjct: 168 VMGMGEPLYNFENVATALEIAMDGEGIGISKRRITLSTSGVVPMMKICGERLGVNLAVSL 227 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HAV++++R+ ++PIN+KYPL+ L+ ACR YPG SNARRITFEY+MLKG+NDS DA L+ Sbjct: 228 HAVTDEIRDRIMPINKKYPLKELMQACRDYPGASNARRITFEYIMLKGVNDSAADARALL 287 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K++KG+PAK NLIPFNPWPG E+ D K FS+ ++ +GYS+PIR PRG DILAACG Sbjct: 288 KLIKGLPAKFNLIPFNPWPGSEFETPDIKTTKAFSDILQDAGYSAPIRMPRGRDILAACG 347 Query: 364 QLKSLSKR 371 QL+S S+R Sbjct: 348 QLRSESQR 355 >gi|17545931|ref|NP_519333.1| hypothetical protein RSc1212 [Ralstonia solanacearum GMI1000] gi|81505540|sp|Q8Y032|RLMN_RALSO RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|17428226|emb|CAD14914.1| conserved hypothetical protein 48 [Ralstonia solanacearum GMI1000] Length = 383 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 151/378 (39%), Positives = 219/378 (57%), Gaps = 18/378 (4%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN + +L+ + L +G R Q+ +WI+ G DF M+D+++ + Sbjct: 1 MNDM--VNLLDFDAQGLLAYCESLG----EKSFRAKQLQRWIHQSGAADFGEMTDLAKSL 54 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L +I P ++ + +S DGTRKWL+ +G +ETVYIPE++RGTLCVSS Sbjct: 55 REKLATRATIQAPAVISDHLSSDGTRKWLV-----DVGAGNAVETVYIPEETRGTLCVSS 109 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC++ C FC TG Q RNL+ EI+ Q+ +A + G P R I+ Sbjct: 110 QAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLWMAEFAMRKQLGR-------GPKDDRVIT 162 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+D V ++ + D S+RR+TLSTSG VP + R+ +++ V LA Sbjct: 163 NVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSQDLPVALA 222 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++ LR++LVP+N+KYPL L+ ACR Y + ITFEY ML G+NDS A Sbjct: 223 VSLHASNDALRDVLVPLNKKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDSVEHAR 282 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L++++ +P K NLIPFNP+P S+ + I FS+ + +G + IR RG DI A Sbjct: 283 ELLRVVADVPCKFNLIPFNPFPESGLKRSNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDA 342 Query: 361 ACGQLKSLSKRIPKVPRQ 378 ACGQL K ++ + Sbjct: 343 ACGQLAGEVKDRTRLAER 360 >gi|312796090|ref|YP_004029012.1| radical SAM protein [Burkholderia rhizoxinica HKI 454] gi|312167865|emb|CBW74868.1| Radical SAM family enzyme [Burkholderia rhizoxinica HKI 454] Length = 391 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 153/378 (40%), Positives = 211/378 (55%), Gaps = 16/378 (4%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +L+ L +G R Q+ +WI+ G+ DF M+D+++ + Sbjct: 13 MTMTDTVNLLDFDAAGLVAYCASLG----EKPFRARQLQRWIHHGGVSDFDAMTDLAKSL 68 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L SI +P ++ + S DGTRKWLL +G +ETVYIPE+ RGTLCVSS Sbjct: 69 RDKLKTRASIRHPAVLQDHTSADGTRKWLL-----DVGEGNAVETVYIPEQGRGTLCVSS 123 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC++ C FC TG Q RNL EI+ Q+ +A L G + R I+ Sbjct: 124 QAGCAVNCRFCSTGKQGFSRNLGVGEIIGQLWMAEFALRAARGG-------LAPGERVIT 176 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL NFD V ++ + D S+RR+TLSTSG VP I R+ E+ V LA Sbjct: 177 NVVMMGMGEPLLNFDAVVPAMRLMLDDHAYGLSRRRVTLSTSGVVPMIDRLAAELPVALA 236 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++ LR+ LVP+NRKYPL L+ AC Y ++ ITFEY ML G+ND A Sbjct: 237 VSLHAPNDALRDELVPLNRKYPLAELMAACNRYLRVAPRDFITFEYCMLDGVNDRDEHAR 296 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L+ + + +P K NLIPFNP+P L S + I F++ + +G + +R RG DI A Sbjct: 297 QLLALTRDVPCKFNLIPFNPFPESGLLRSHPERIKQFAQILIDAGVVTTVRRTRGDDIDA 356 Query: 361 ACGQLKSLSKRIPKVPRQ 378 ACGQL + +V + Sbjct: 357 ACGQLAGEVRDRTRVAER 374 >gi|307250523|ref|ZP_07532468.1| hypothetical protein appser4_13040 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307257327|ref|ZP_07539097.1| hypothetical protein appser10_13250 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306857465|gb|EFM89576.1| hypothetical protein appser4_13040 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306864177|gb|EFM96090.1| hypothetical protein appser10_13250 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 393 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 155/377 (41%), Positives = 218/377 (57%), Gaps = 22/377 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+E+ E ++G R Q+ KWIY G +F MS+I++ +R L Sbjct: 25 EKINLMNLTRQEMRELFAEMG----EKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKL 80 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q I PE+ E+ S DGT KW ++ +IETVYIPE R TLCVSSQVGC Sbjct: 81 KQIAEIKAPEVSVEQRSSDGTIKWAMQVGD------QQIETVYIPEDDRATLCVSSQVGC 134 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNLT EI+ QV A ++G+F + R I+N+VM Sbjct: 135 ALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGI----------TGVRPITNVVM 184 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D SKRR+TLST+G VP + + E+I V LAISLH Sbjct: 185 MGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKIDVALAISLH 244 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ ++PIN+KY ++ML+D+ Y +SNA ++T EYV+L +ND A L Sbjct: 245 APNDELRDEIMPINKKYNIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQL 304 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+P Y S + F + + G++ +R RG DI AAC Sbjct: 305 AEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAAC 364 Query: 363 GQLKSLSKRIPKVPRQE 379 GQL K ++ Sbjct: 365 GQLAGDVIDRTKRTMEK 381 >gi|32035054|ref|ZP_00135120.1| COG0820: Predicted Fe-S-cluster redox enzyme [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208740|ref|YP_001053965.1| hypothetical protein APL_1274 [Actinobacillus pleuropneumoniae L20] gi|205829705|sp|A3N1S4|RLMN_ACTP2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|126097532|gb|ABN74360.1| hypothetical protein APL_1274 [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 393 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 155/377 (41%), Positives = 218/377 (57%), Gaps = 22/377 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+E+ E ++G R Q+ KWIY G +F MS+I++ +R L Sbjct: 25 EKINLMNLTRKEMRELFAEMG----EKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKL 80 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q I PE+ E+ S DGT KW ++ +IETVYIPE R TLCVSSQVGC Sbjct: 81 KQIAEIKAPEVSVEQRSSDGTIKWAMQVGD------QQIETVYIPEDDRATLCVSSQVGC 134 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNLT EI+ QV A ++G+F + R I+N+VM Sbjct: 135 ALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGI----------TGVRPITNVVM 184 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D SKRR+TLST+G VP + + E+I V LAISLH Sbjct: 185 MGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKIDVALAISLH 244 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ ++PIN+KY ++ML+D+ Y +SNA ++T EYV+L +ND A L Sbjct: 245 APNDELRDEIMPINKKYNIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQL 304 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+P Y S + F + + G++ +R RG DI AAC Sbjct: 305 AEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAAC 364 Query: 363 GQLKSLSKRIPKVPRQE 379 GQL K ++ Sbjct: 365 GQLAGDVIDRTKRTMEK 381 >gi|325577793|ref|ZP_08148068.1| cfr family radical SAM enzyme [Haemophilus parainfluenzae ATCC 33392] gi|325160538|gb|EGC72664.1| cfr family radical SAM enzyme [Haemophilus parainfluenzae ATCC 33392] Length = 382 Score = 453 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 156/382 (40%), Positives = 220/382 (57%), Gaps = 24/382 (6%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R Sbjct: 10 TNTKKINLMDLTRQQMREFFAELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLR 65 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQ Sbjct: 66 EKLKAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQ 119 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC+L C+FC T Q RNLT EI+ QV A ++G+F + R I+N Sbjct: 120 VGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITN 169 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 +VMMGMGEPL N NV ++ I D SKRR+TLSTSG VP + + ++I V LAI Sbjct: 170 VVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDMLRDKIDVALAI 229 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299 SLHA +++LR+ ++PIN+KY + ML+D+ Y +SNA ++T EYV+L +ND A Sbjct: 230 SLHAPNDELRDEIMPINKKYNIRMLMDSVHRYLEVSNANHGKVTIEYVLLDHVNDGTEHA 289 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L K+LK P KINLIP+NP+P Y S + F + + G++ +R RG DI Sbjct: 290 HQLAKVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDID 349 Query: 360 AACGQLKSLSKRIPKVPRQEMQ 381 AACGQL I + R M+ Sbjct: 350 AACGQLAGDV--IDRTKRTAMK 369 >gi|221133865|ref|ZP_03560170.1| hypothetical protein GHTCC_02964 [Glaciecola sp. HTCC2999] Length = 389 Score = 453 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 160/380 (42%), Positives = 222/380 (58%), Gaps = 22/380 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R + E L IG R QI +WIY G+ MS+I+++++ L Sbjct: 18 KKTNLLDLTRSGMREFLSSIG----EKPFRADQIMQWIYHHGVSSVDEMSNINKQLKAKL 73 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 N H I+ PEI ++ + DGT K+ L G E+E V+IPE R TLCVSSQVGC Sbjct: 74 NTHAEIVAPEIAYQQNATDGTIKFALTLN-----GGQEVEAVWIPETDRATLCVSSQVGC 128 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNL+ EI+ QV + +G + + R I+N+VM Sbjct: 129 ALECTFCSTAQQGFNRNLSVSEIIGQVWRVATTIG----------LSKDTAKRPITNVVM 178 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ + D G SKRR+TLSTSG VP + +G++I V LAISLH Sbjct: 179 MGMGEPLLNLKNVVPAMELMMDDYGFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISLH 238 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPRDALNL 302 A ++ LR+ +VP+N+KY +E + R Y S N ++T EYVML INDS A L Sbjct: 239 APNDTLRDEIVPVNKKYNIETFLAGVRRYLDKSKANQGKVTVEYVMLSHINDSTDQAHEL 298 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K+L G P KINLIPFNP+PG Y CS I FS+ + +GY+ +R RG DI AAC Sbjct: 299 AKVLSGTPCKINLIPFNPYPGSPYTCSSNSRIDRFSKVLMAAGYTVMVRKTRGDDIDAAC 358 Query: 363 GQL-KSLSKRIPKVPRQEMQ 381 GQL + R ++ +++++ Sbjct: 359 GQLVGDVVDRTKRMLKKQLK 378 >gi|94311047|ref|YP_584257.1| hypothetical protein Rmet_2109 [Cupriavidus metallidurans CH34] gi|123260051|sp|Q1LLI8|RLMN_RALME RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|93354899|gb|ABF08988.1| Radical SAM enzyme, Cfr family [Cupriavidus metallidurans CH34] Length = 384 Score = 453 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 151/378 (39%), Positives = 214/378 (56%), Gaps = 18/378 (4%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN L +L+ + + L ++G R Q+ +WI+ G F M+D+++ + Sbjct: 1 MNNL--VNLLDLDADALTAYCGELG----EKPFRARQLQRWIHQFGASHFDAMTDLAKSL 54 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L I P + + S DGTRKWLL +G +ETVYIPE +RGTLCVSS Sbjct: 55 REKLATRAEIRSPAAISDHTSSDGTRKWLL-----DVGAGNAVETVYIPEDTRGTLCVSS 109 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC++ C FC TG Q RNL+ EI+ Q+ +A + + P R IS Sbjct: 110 QAGCAVNCRFCSTGKQGFSRNLSTGEIIGQLWMAEFAMR-------AQLGRGPKDERVIS 162 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+D V ++ + D S+RR+TLSTSG VP + R+ +++ V LA Sbjct: 163 NVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSKDLPVALA 222 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++ LR++LVP+NRKYPL L+ ACR Y + ITFEY ML G+ND A Sbjct: 223 VSLHASNDALRDVLVPLNRKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDGVEHAR 282 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L+K++ +P K NLIPFNP+P S+ + I F++ + +G + IR RG DI A Sbjct: 283 ELLKLVADVPCKFNLIPFNPFPESGLKRSNNEQIRRFAQVLMDAGIVTTIRKTRGDDIDA 342 Query: 361 ACGQLKSLSKRIPKVPRQ 378 ACGQL ++ + Sbjct: 343 ACGQLAGEVMDRTRLAER 360 >gi|301154683|emb|CBW14146.1| predicted enzyme [Haemophilus parainfluenzae T3T1] Length = 382 Score = 453 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 155/382 (40%), Positives = 221/382 (57%), Gaps = 24/382 (6%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R Sbjct: 10 TNTKKINLMDLTRQQMREFFAELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLR 65 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQ Sbjct: 66 EKLKAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQ 119 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC+L C+FC T Q RNLT EI+ QV A ++G+F + R I+N Sbjct: 120 VGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITN 169 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 +VMMGMGEPL N NV ++ I D SKRR+TLSTSG VP + + ++I V LAI Sbjct: 170 VVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDMLRDKIDVALAI 229 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299 SLHA +++LR+ ++PIN+KY ++ML+D+ Y +SNA ++T EYV+L +ND A Sbjct: 230 SLHAPNDELRDEIMPINKKYNIKMLMDSVHRYLEVSNANHGKVTIEYVLLDHVNDGTEHA 289 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L ++LK P KINLIP+NP+P Y S + F + + G++ +R RG DI Sbjct: 290 HQLAQVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDID 349 Query: 360 AACGQLKSLSKRIPKVPRQEMQ 381 AACGQL I + R M+ Sbjct: 350 AACGQLAGDV--IDRTKRTAMK 369 >gi|300691809|ref|YP_003752804.1| hypothetical protein RPSI07_2165 [Ralstonia solanacearum PSI07] gi|299078869|emb|CBJ51530.1| conserved protein of unknown function, predicted radical SAM enzyme [Ralstonia solanacearum PSI07] Length = 383 Score = 453 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 151/378 (39%), Positives = 218/378 (57%), Gaps = 18/378 (4%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN + +L+ + L +G R Q+ +WI+ G DF M+D+++ + Sbjct: 1 MNDM--VNLLDFDAQGLLAYCESLG----EKSFRAKQLQRWIHQSGAADFGEMTDLAKSL 54 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L +I P ++ + +S DGTRKWL+ +G +ETVYIPE++RGTLCVSS Sbjct: 55 REKLATRATIQAPAVISDHLSSDGTRKWLV-----DVGAGNAVETVYIPEETRGTLCVSS 109 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC++ C FC TG Q RNL+ EI+ Q+ +A + G P R I+ Sbjct: 110 QAGCAVNCRFCSTGKQGFSRNLSTGEIIGQLWMAEFAVRKQLGR-------GPKDDRVIT 162 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+D V ++ + D S+RR+TLSTSG VP + R+ ++ V LA Sbjct: 163 NVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSRDLPVALA 222 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++ LR++LVP+N+KYPL L+ ACR Y + ITFEY ML G+NDS A Sbjct: 223 VSLHASNDALRDVLVPLNKKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDSVEHAR 282 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L++++ +P K NLIPFNP+P S+ + I FS+ + +G + IR RG DI A Sbjct: 283 ELLRVIADVPCKFNLIPFNPFPESGLKRSNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDA 342 Query: 361 ACGQLKSLSKRIPKVPRQ 378 ACGQL K ++ + Sbjct: 343 ACGQLAGEVKDRTRLAER 360 >gi|50083794|ref|YP_045304.1| putative Fe-S-cluster redox enzyme [Acinetobacter sp. ADP1] gi|81393776|sp|Q6FEM6|RLMN_ACIAD RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|49529770|emb|CAG67482.1| conserved hypothetical protein; putative Fe-S-cluster redox enzyme [Acinetobacter sp. ADP1] Length = 414 Score = 453 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 172/392 (43%), Positives = 226/392 (57%), Gaps = 32/392 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+GM R ELE+ +IG + R QI KWI+ + D M++IS ++R L Sbjct: 33 KVNLLGMSRIELEQFFEQIG----EKKFRAGQIMKWIHQYFVTDLAEMTNISGKLRTKLE 88 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGTLCVSSQ 121 Q I PE+V S DGTRKW+ R G +ETV IP + R TLC+SSQ Sbjct: 89 QVCEIKAPEVVHRHYSKDGTRKWVFRVGE---GSGSLVETVLIPAEDKTGSRKTLCISSQ 145 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC+L CSFC TG Q R+LT EI+ Q+ +A +E + + R ++N Sbjct: 146 VGCALDCSFCSTGKQGFQRDLTPAEIIGQLWVANQSY--------VEDVPVAERTRAVTN 197 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 +VMMGMGEPL NF V S+SI D SKRR+TLSTSG VP I ++ EE+ V LAI Sbjct: 198 VVMMGMGEPLLNFKPVVHSMSIMLDDYAYGMSKRRVTLSTSGVVPMIDKLAEELDVALAI 257 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL----SNARRITFEYVMLKGINDSPR 297 SLHA +N LR+ LVPIN+KYPLE LI A + Y S + +T EYVML G+ND P Sbjct: 258 SLHAPNNPLRDELVPINKKYPLEQLIAAAQRYITKDGNESARKHVTIEYVMLDGVNDHPE 317 Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 A L+K+LK +P+KINLIPFNP+P Y S + I+ F + + +G+ IR RG D Sbjct: 318 HAQQLVKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIMAFQKTLSDAGFVCTIRQTRGDD 377 Query: 358 ILAACGQL---------KSLSKRIPKVPRQEM 380 I AACGQL ++ + RQE+ Sbjct: 378 IDAACGQLVGQVADRTRRAEQWKKKVAERQEI 409 >gi|83747944|ref|ZP_00944975.1| Radical SAM family enzyme [Ralstonia solanacearum UW551] gi|207743447|ref|YP_002259839.1| hypothetical protein 48 [Ralstonia solanacearum IPO1609] gi|83725362|gb|EAP72509.1| Radical SAM family enzyme [Ralstonia solanacearum UW551] gi|206594844|emb|CAQ61771.1| conserved hypothetical protein 48 [Ralstonia solanacearum IPO1609] Length = 383 Score = 453 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 151/378 (39%), Positives = 218/378 (57%), Gaps = 18/378 (4%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN + +L+ + L +G R Q+ +WI+ G DF M+D+++ + Sbjct: 1 MNDM--VNLLDFDAQGLLAYCESLG----EKSFRAKQLQRWIHQSGAADFGEMTDLAKSL 54 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L +I P ++ + +S DGTRKWL+ +G +ETVYIPE++RGTLCVSS Sbjct: 55 REKLATRATIQAPAVISDHLSSDGTRKWLV-----DVGAGNAVETVYIPEETRGTLCVSS 109 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC++ C FC TG Q RNL+ EI+ Q+ +A + G P R I+ Sbjct: 110 QAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLWMAEFAMRKQLGR-------GPKDDRVIT 162 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+D V ++ + D S+RR+TLSTSG VP + R+ ++ V LA Sbjct: 163 NVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSRDLPVALA 222 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++ LR++LVP+N+KYPL L+ ACR Y + ITFEY ML G+NDS A Sbjct: 223 VSLHASNDALRDVLVPLNKKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDSVEHAR 282 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L++++ +P K NLIPFNP+P S+ + I FS+ + +G + IR RG DI A Sbjct: 283 ELLRVIADVPCKFNLIPFNPFPESGLKRSNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDA 342 Query: 361 ACGQLKSLSKRIPKVPRQ 378 ACGQL K ++ + Sbjct: 343 ACGQLAGEVKDRTRLAER 360 >gi|295676905|ref|YP_003605429.1| radical SAM enzyme, Cfr family [Burkholderia sp. CCGE1002] gi|295436748|gb|ADG15918.1| radical SAM enzyme, Cfr family [Burkholderia sp. CCGE1002] Length = 383 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 150/384 (39%), Positives = 219/384 (57%), Gaps = 10/384 (2%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +L+ + + L +G R Q+ +WI+ DF GM+D+++ + Sbjct: 1 MTSSPSVNLLDLDAQGLVAYCDSLG----EKPFRAKQLQRWIHQYNAADFDGMTDLAKSL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L +I P +V + IS DGTRKWL+ +G +ETVYIPE++RGTLCVSS Sbjct: 57 REKLKGRATITMPGVVSDHISSDGTRKWLI-----DVGNGNAVETVYIPEETRGTLCVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI- 179 Q GC++ C FC TG Q RNLT EI+ Q+ +A L G + G ++ Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLTTGEIIGQLRMAEFALRASRGDAGGRAIGGDGKGERVV 171 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 +N+VMMGMGEPL N+D V ++ + D S+RR+TLSTSG VP + R+G ++ V L Sbjct: 172 TNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADVPVAL 231 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA ++ LR++LVP+N+KYPL L+ AC Y ++ ITFEY ML G+NDS A Sbjct: 232 AVSLHASNDALRDVLVPLNKKYPLRELMAACERYLKVAPRDFITFEYCMLDGVNDSEAHA 291 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L+ + + +P K NLIPFNP+P + S + I F++ + +G + +R RG DI Sbjct: 292 RELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQVLIDAGVVTTVRKTRGDDID 351 Query: 360 AACGQLKSLSKRIPKVPRQEMQIT 383 AACGQL K ++ + + Sbjct: 352 AACGQLAGAVKDRTRLAERTGKAA 375 >gi|88858483|ref|ZP_01133125.1| putative pyruvate formate lyase activating enzyme 2; Fe-S cluster domain [Pseudoalteromonas tunicata D2] gi|88820100|gb|EAR29913.1| putative pyruvate formate lyase activating enzyme 2; Fe-S cluster domain [Pseudoalteromonas tunicata D2] Length = 392 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 165/382 (43%), Positives = 228/382 (59%), Gaps = 21/382 (5%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 KK +L+ + RE + E + G R Q+ KWIY G+ +F MS+I+++++ Sbjct: 15 TTKKKINLLDLNREGMRELFVSFG----EKPFRGDQVMKWIYHFGVDNFDEMSNINKKLK 70 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L + I+ PEI ++++ DGT K+ L G E+ETV+IPEK R TLCVSSQ Sbjct: 71 ARLERECEIVAPEISAKQVAADGTIKYALLLE-----GGQEVETVWIPEKERATLCVSSQ 125 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC+L C+FC T Q RNL EI+ QV +G + S R ++N Sbjct: 126 VGCALECTFCSTAQQGFNRNLKVSEIIGQVWRVAKDIG----------LYGDSTRRPVTN 175 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 +VMMGMGEPL N +NV ++ + D SKRR+TLSTSG VP + + E I V LAI Sbjct: 176 VVMMGMGEPLLNINNVVPAMELMMDDWAFGLSKRRVTLSTSGVVPALDILKERIDVALAI 235 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDAL 300 SLHA N LR++LVPIN+KYP+E + ACR Y S A + +T EYVML GINDS A Sbjct: 236 SLHAPDNALRDVLVPINKKYPIEEFLAACRRYIDGSKANKDVTVEYVMLDGINDSMEQAH 295 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L++ LKG P+K+NLIPFNP+PG EY S I FS+ ++ +G + +R RG DI A Sbjct: 296 QLVETLKGTPSKVNLIPFNPFPGNEYGRSSNSRIDRFSKILQAAGITCIVRRTRGDDIDA 355 Query: 361 ACGQL-KSLSKRIPKVPRQEMQ 381 ACGQL + R ++ ++++Q Sbjct: 356 ACGQLVGDVVDRTKRLAKRQLQ 377 >gi|311105357|ref|YP_003978210.1| radical SAM superfamily protein 2 [Achromobacter xylosoxidans A8] gi|310760046|gb|ADP15495.1| radical SAM superfamily protein 2 [Achromobacter xylosoxidans A8] Length = 384 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 151/380 (39%), Positives = 217/380 (57%), Gaps = 9/380 (2%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +++ +L+G+ L E + K G R Q+ +W++ RG F M+D++++ Sbjct: 1 METVERINLLGLDGSALSELVGKWG----GKPFRARQLQRWMHQRGADSFDAMTDLARDF 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L QH I + E+ S DGTRKWL +G IETV+IPE RGTLC+SS Sbjct: 57 RGQLAQHCRIEALPVNIEQRSTDGTRKWLF-----DVGQGNAIETVFIPEDDRGTLCISS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC + C FC TG Q RNL EI+ Q+ A+ +L G +E R IS Sbjct: 112 QAGCVVNCRFCSTGHQGFNRNLKTSEIIGQLWWAKRVLEADIGTARLESARATEDTRVIS 171 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+D V +L + D S+RR+T+STSG VP + R+ ++ V LA Sbjct: 172 NVVMMGMGEPLLNYDQVLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPVALA 231 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++ LR+ LVP+N+KYPL+ L+ AC Y + ITFEY ML GIND+ + A Sbjct: 232 VSLHAPNDALRDELVPLNKKYPLKELLAACERYLAFAPRDFITFEYCMLDGINDTDQHAK 291 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 LI+I + + K+NLIPFNP+P S+ + F++ + +G + +R RG DI A Sbjct: 292 ELIQIARQLRCKLNLIPFNPFPESGLKRSNSARVKVFAQRLMDAGIITTVRKTRGDDIDA 351 Query: 361 ACGQLKSLSKRIPKVPRQEM 380 ACGQL + ++ + Sbjct: 352 ACGQLAGEVRDRTRITERNA 371 >gi|254283024|ref|ZP_04957992.1| radical SAM enzyme, Cfr family [gamma proteobacterium NOR51-B] gi|219679227|gb|EED35576.1| radical SAM enzyme, Cfr family [gamma proteobacterium NOR51-B] Length = 380 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 157/382 (41%), Positives = 215/382 (56%), Gaps = 22/382 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+GM R ++E +G R R Q+ KWI+ G+ D + M+ + + +R L+ Sbjct: 16 KVNLLGMSRAQMEVFFTDLG----EKRFRAGQVMKWIHHHGVSDIEAMTTLGKALRERLS 71 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + PEI D+K S DGTRKW +R + G +E V IPE SR TLCVSSQVGCS Sbjct: 72 SIAEVRPPEIADQKDSADGTRKWAIR-----VDGGALVEAVLIPEGSRATLCVSSQVGCS 126 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC TG Q R+LT+ EI+ QV LA F + GR ++N+VMM Sbjct: 127 LDCKFCSTGKQGFQRDLTSAEIIGQVWLAIKSYDAFQSGK----------GRVVTNVVMM 176 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV S+S+ +D SKRR+TLSTSG VP + ++ E V LAISLH Sbjct: 177 GMGEPLLNFDNVVSSMSLMTDDWAYGLSKRRVTLSTSGVVPALDKLAECSDVSLAISLHG 236 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGL--SNARRITFEYVMLKGINDSPRDALNLI 303 ++++RN +VPIN++YP+ L+ + R+Y R +T EY +L G+ND A L Sbjct: 237 PTDEIRNRIVPINKRYPIAELLRSARNYIDAQSDTKRVVTIEYTLLAGVNDQVEHARQLA 296 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LK P KINLIPFN +P + + F + + +GY +RT RG DI AACG Sbjct: 297 VLLKDFPCKINLIPFNDFPHSGFTRPSGNAVSRFWQVLIDAGYVVTVRTTRGDDIDAACG 356 Query: 364 QLKSL-SKRIPKVPRQEMQITG 384 QL R + R ++ Sbjct: 357 QLVGEVVDRTRRAQRHRSRLEA 378 >gi|319775768|ref|YP_004138256.1| Fe-S-cluster redox enzyme [Haemophilus influenzae F3047] gi|317450359|emb|CBY86575.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae F3047] Length = 383 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 159/379 (41%), Positives = 219/379 (57%), Gaps = 24/379 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L Sbjct: 14 KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 69 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC Sbjct: 70 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F + R I+N+VM Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ +VPIN+KY ++ LID+ Y +SNA ++T EYVML +ND A L Sbjct: 234 APNDELRDEIVPINKKYNIKTLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+P Y S I F + + G++ IR RG DI AAC Sbjct: 294 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAAC 353 Query: 363 GQLKSLSKRIPKVPRQEMQ 381 GQL I + R M+ Sbjct: 354 GQLAGDV--IDRTKRTAMK 370 >gi|205829855|sp|Q2W897|RLMN_MAGMM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase Length = 456 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 195/370 (52%), Positives = 255/370 (68%), Gaps = 19/370 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +LIG+ R++L + IG R Q+W W+Y RG DF M+ IS+ + L Sbjct: 86 KTNLIGLSRDQLIAEMASIG----EKPFRAKQLWHWMYNRGETDFAKMTSISKSMHGALA 141 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS--RGTLCVSSQVG 123 + + + P + E IS D TRKWLL+F E ETVYIP+ RG +C+S+QVG Sbjct: 142 ERYVVRRPGVTKELISADTTRKWLLKF-----DDGHEAETVYIPDADEERGAVCISTQVG 196 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+LTC FC+TGTQ LVRNL+A EI+ Q ++AR G++P +D GR++SNIV Sbjct: 197 CTLTCRFCHTGTQLLVRNLSAAEIVGQFMVARDSYGEWPTPDD--------GGRQLSNIV 248 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 +MGMGEPL NF+NV +L IA D G+ SKRRITLSTSG VP + GE +GV LA+SL Sbjct: 249 VMGMGEPLYNFENVATALEIAMDGEGIGISKRRITLSTSGVVPMMKECGERLGVNLAVSL 308 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HAV++++R+ ++PIN+KYPL+ L+ ACR YPG SNARRITFEY+MLKGINDS DA L+ Sbjct: 309 HAVTDEIRDRIMPINKKYPLKELMQACREYPGASNARRITFEYIMLKGINDSAADARALL 368 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K++KG+PAK NLIPFNPWPG E+ D K FS+ ++ +GYS+PIR PRG DILAACG Sbjct: 369 KLVKGLPAKFNLIPFNPWPGSEFDTPDIKTTKAFSDILQDAGYSAPIRMPRGRDILAACG 428 Query: 364 QLKSLSKRIP 373 QL+S S+R Sbjct: 429 QLRSESQRER 438 >gi|296113393|ref|YP_003627331.1| Cfr family radical SAM protein [Moraxella catarrhalis RH4] gi|295921087|gb|ADG61438.1| Cfr family radical SAM protein [Moraxella catarrhalis RH4] gi|326559237|gb|EGE09668.1| Cfr family radical SAM protein [Moraxella catarrhalis 46P47B1] gi|326560775|gb|EGE11142.1| Cfr family radical SAM protein [Moraxella catarrhalis 103P14B1] gi|326563516|gb|EGE13775.1| Cfr family radical SAM protein [Moraxella catarrhalis 12P80B1] gi|326570119|gb|EGE20164.1| Cfr family radical SAM protein [Moraxella catarrhalis BC8] gi|326570857|gb|EGE20881.1| Cfr family radical SAM protein [Moraxella catarrhalis BC7] gi|326574406|gb|EGE24348.1| Cfr family radical SAM protein [Moraxella catarrhalis 101P30B1] gi|326576000|gb|EGE25923.1| Cfr family radical SAM protein [Moraxella catarrhalis CO72] gi|326576412|gb|EGE26321.1| Cfr family radical SAM protein [Moraxella catarrhalis O35E] Length = 395 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 161/382 (42%), Positives = 226/382 (59%), Gaps = 29/382 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+GM ++EL + +G R +Q+ KWIY G+ DF M++IS++++H L Sbjct: 18 KKVNLLGMSKDELSAFFVSLG----EKSFRATQVMKWIYQFGVTDFFEMTNISKKLQHKL 73 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVS 119 ++ ++ P + ++ S DGTRKW+ + G +ETV IP R TLC+S Sbjct: 74 HEVACVVPPTVKYKEFSQDGTRKWVFE-----VAGGSLVETVLIPADDGKQFGRKTLCIS 128 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 SQVGC+L CSFC TG Q R+LT EI+ Q+ +A + + E ++ Sbjct: 129 SQVGCALDCSFCSTGKQGFERDLTPSEIIGQLWVANQSYMENVPPTEREN--------RV 180 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 +N+VMMGMGEPL N+D V S+S+ D SKRR+TLSTSG VP + + ++I V L Sbjct: 181 TNVVMMGMGEPLLNYDPVVASMSLMLDDHAFGLSKRRVTLSTSGVVPKMYDLAKDIDVAL 240 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP---GLSNARRITFEYVMLKGINDSP 296 AISLHA +++LRN LVPIN+KYPL+ LI A + Y + + IT EYVML G+NDS Sbjct: 241 AISLHAPNDELRNELVPINKKYPLKDLIKAAKSYVYDENPRHKKHITIEYVMLAGVNDSD 300 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 A L+ +LK +P+KINLIPFNP+P Y S I FS + ++G+ IR RG Sbjct: 301 EHAHQLVDLLKDLPSKINLIPFNPFPHAPYGRSSNNRIHAFSHILNQAGFVCTIRQTRGD 360 Query: 357 DILAACGQL----KSLSKRIPK 374 DI AACGQL ++R K Sbjct: 361 DIDAACGQLVGQVADRTRRAKK 382 >gi|319896694|ref|YP_004134887.1| fe-s-cluster redox enzyme [Haemophilus influenzae F3031] gi|317432196|emb|CBY80548.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae F3031] Length = 383 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 159/379 (41%), Positives = 219/379 (57%), Gaps = 24/379 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L Sbjct: 14 KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 69 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC Sbjct: 70 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F + R I+N+VM Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ +VPIN+KY ++ LID+ Y +SNA ++T EYVML +ND A L Sbjct: 234 APNDELRDEIVPINKKYNIKTLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+P Y S I F + + G++ IR RG DI AAC Sbjct: 294 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAAC 353 Query: 363 GQLKSLSKRIPKVPRQEMQ 381 GQL I + R M+ Sbjct: 354 GQLAGDV--IDRTKRTAMK 370 >gi|119505391|ref|ZP_01627465.1| hypothetical protein MGP2080_14284 [marine gamma proteobacterium HTCC2080] gi|119458846|gb|EAW39947.1| hypothetical protein MGP2080_14284 [marine gamma proteobacterium HTCC2080] Length = 388 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 156/375 (41%), Positives = 223/375 (59%), Gaps = 22/375 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ R++LE+ +G R R Q+ KW++ +G+ DF MS++ + +R L Sbjct: 16 KVNLLGLSRQQLEDFFTDLG----EKRFRAQQVMKWMHHQGVIDFAAMSNLGKGLREKLE 71 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +I PEI D++ S DGTRKW +R + G +E V IPE R TLCVSSQVGCS Sbjct: 72 TLATITPPEIADQQDSADGTRKWAVR-----VAGGALVEAVLIPEAGRATLCVSSQVGCS 126 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC TG Q R+LTA EI+ QV LA + + + GR ++N+VMM Sbjct: 127 LDCKFCSTGKQGFQRDLTAAEIIGQVWLAINSYSGWQSGK----------GRIVTNVVMM 176 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++S+ +D + SKR++TLSTSG VP + R+ E V LA+SLHA Sbjct: 177 GMGEPLLNFDNVVSAMSLMTDDLAYGLSKRKVTLSTSGVVPALDRLAEFSDVSLAVSLHA 236 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYP-GLSNARRI-TFEYVMLKGINDSPRDALNLI 303 ++++RN +VPINR+YP++ L+ + + Y S+ +R+ T EY +L G+ND P A L Sbjct: 237 PNDEIRNKIVPINRRYPIQQLLQSAKSYIDAQSDRKRVVTIEYTLLAGVNDQPEHARELS 296 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LK P KINLIPFN +P + + F + + +G+ +R+ RG DI AACG Sbjct: 297 TLLKDFPCKINLIPFNHFPNSGFDRPSGNAVSRFWQVLVDAGFIVTVRSTRGDDIDAACG 356 Query: 364 QLKSL-SKRIPKVPR 377 QL R + R Sbjct: 357 QLVGEVVDRTRRSER 371 >gi|238020955|ref|ZP_04601381.1| hypothetical protein GCWU000324_00852 [Kingella oralis ATCC 51147] gi|237867935|gb|EEP68941.1| hypothetical protein GCWU000324_00852 [Kingella oralis ATCC 51147] Length = 366 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 157/365 (43%), Positives = 216/365 (59%), Gaps = 20/365 (5%) Query: 18 EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD 77 + ++G R Q+ +WI+ G + F M+D+++ +R L + I P ++ Sbjct: 14 TDHFAQMG----EKPFRAKQVMRWIHQSGAQTFDEMTDLAKALRAKLEDNAVIGIPALMT 69 Query: 78 EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137 + S DGTRKWLL +G +ETV+IPE RGTLC+SSQVGC+L C+FC TG Q Sbjct: 70 SQESRDGTRKWLL-----DVGTGNGVETVFIPEAERGTLCISSQVGCALECTFCSTGRQG 124 Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197 RNLTA EI+ Q+ A LG V P R ISN+VMMGMGEP+ N+DNV Sbjct: 125 FNRNLTAAEIIGQLWWANKALG-----------VTPKNERVISNVVMMGMGEPMANYDNV 173 Query: 198 KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPI 257 +LSI D G S+RR+T+STSG VP + R+ +++ V LA+SLHA ++ +R+ +VP+ Sbjct: 174 ITALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLKDDMPVALAVSLHASNDKVRDEIVPL 233 Query: 258 NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIP 317 N+KYPL+ L+ AC Y + ITFEYVML GIND P A L++++K P K NLIP Sbjct: 234 NKKYPLKELMAACNRYLAKAPRDFITFEYVMLDGINDKPEHARELVQLVKDTPCKFNLIP 293 Query: 318 FNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPR 377 FNP+P Y S K+I F E + + + +R RG DI AACGQL + K Sbjct: 294 FNPFPNSGYERSSNKNINIFKEILMEADLVTTVRKTRGDDIDAACGQLAGQVQDKTKRQA 353 Query: 378 QEMQI 382 + QI Sbjct: 354 KWQQI 358 >gi|299067263|emb|CBJ38460.1| conserved protein of unknown function, predicted radical SAM enzyme [Ralstonia solanacearum CMR15] Length = 383 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 151/378 (39%), Positives = 218/378 (57%), Gaps = 18/378 (4%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN + +L+ + L +G R Q+ +WI+ G DF M+D+++ + Sbjct: 1 MNDM--VNLLDFDAQGLLAYCESLG----EKSFRAKQLQRWIHQSGAADFGEMTDLAKSL 54 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L +I P ++ + +S DGTRKWL+ +G +ETVYIPE++RGTLCVSS Sbjct: 55 REKLATRATIQAPAVISDNLSSDGTRKWLV-----DVGAGNAVETVYIPEETRGTLCVSS 109 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC++ C FC TG Q RNL+ EI+ Q+ +A + G P R I+ Sbjct: 110 QAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLWMAEFAMRKQLGR-------GPKDDRVIT 162 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+D V ++ + D S+RR+TLSTSG VP + R+ ++ V LA Sbjct: 163 NVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSHDLPVALA 222 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++ LR++LVP+N+KYPL L+ ACR Y + ITFEY ML G+NDS A Sbjct: 223 VSLHASNDALRDVLVPLNKKYPLAELVAACRRYLEFAPRDFITFEYCMLDGVNDSVEHAR 282 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L++++ +P K NLIPFNP+P S+ + I FS+ + +G + IR RG DI A Sbjct: 283 ELLRVVADVPCKFNLIPFNPFPESGLKRSNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDA 342 Query: 361 ACGQLKSLSKRIPKVPRQ 378 ACGQL K ++ + Sbjct: 343 ACGQLAGEVKDRTRLAER 360 >gi|88703674|ref|ZP_01101390.1| Radical SAM superfamily protein [Congregibacter litoralis KT71] gi|88702388|gb|EAQ99491.1| Radical SAM superfamily protein [Congregibacter litoralis KT71] Length = 381 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 156/379 (41%), Positives = 216/379 (56%), Gaps = 22/379 (5%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K +L GM R +LE L++G R R Q+ KW++ +G DF MS++ + +R Sbjct: 11 VEKVNLFGMSRTQLEAFFLEMG----EKRFRAQQLMKWMHHQGECDFSAMSNLGKALRER 66 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L+ + P + + S DGTRKWL+ + G +ETV IP+ +R TLCVSSQVG Sbjct: 67 LSAIAEVRPPVVESQHDSSDGTRKWLV-----HVDGGGLVETVLIPDGNRATLCVSSQVG 121 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 CSL CSFC TG Q R+L+A EI+ QV LA F GR ++N+V Sbjct: 122 CSLDCSFCSTGKQGFQRDLSAAEIIGQVWLAIKSYDAFQS----------GNGRVVTNVV 171 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL NFDNV ++++ D +G SKRR+TLSTSG VP + ++ E LA+SL Sbjct: 172 MMGMGEPLLNFDNVVTAMNLMMDDLGYGISKRRVTLSTSGVVPALDKLAEVSEASLAVSL 231 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPG--LSNARRITFEYVMLKGINDSPRDALN 301 HA +++LRN LVP+NR+YP+ L+ + + Y R +T EY ++ GIND P A Sbjct: 232 HAPNDELRNQLVPVNRRYPIAQLLASAQRYIDAQKDKKRVVTIEYTLMAGINDQPEQARE 291 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L +L P KINLIPFNP+P Y + F + + +G+ +RT RG DI AA Sbjct: 292 LALLLADFPCKINLIPFNPFPNSGYERPSGNAVSRFWQVLVDAGFVVTVRTTRGDDIDAA 351 Query: 362 CGQLKSL-SKRIPKVPRQE 379 CGQL R + R Sbjct: 352 CGQLVGEVVDRTRRSARHR 370 >gi|254499335|ref|ZP_05112006.1| radical SAM protein [Legionella drancourtii LLAP12] gi|254351440|gb|EET10304.1| radical SAM protein [Legionella drancourtii LLAP12] Length = 378 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 168/374 (44%), Positives = 226/374 (60%), Gaps = 20/374 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ +++ E L G R QI +WI+ G+ DF M+++ + +R L Sbjct: 4 QKVNLLNYNYQQMRELLSSWG----EQPYRAQQIIQWIHQSGLVDFAQMTNLGKALREKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +Q I PEIV + S DGT KWLL+ IETV+IPE +RGTLCVSSQVGC Sbjct: 60 SQLSYIKVPEIVTCQKSSDGTHKWLLKLDC-----GNCIETVFIPEANRGTLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L CSFC T Q RNL+ EI+ QV LA L G D ++++N+VM Sbjct: 115 ALNCSFCSTAKQGFNRNLSTAEIIGQVWLAVRELSTNQGVHD----------KRLTNVVM 164 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV +++I D SKRR+TLSTSG +P++ R+ + V LA+SLH Sbjct: 165 MGMGEPLLNFDNVVSAMNIMMDDFAYGLSKRRVTLSTSGVLPDLERLRQVSPVALAVSLH 224 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +++LRN LVPIN+KYPL L+ C+ Y R++TFEYVMLKG+ND P A LIK Sbjct: 225 APNDELRNELVPINKKYPLAQLMALCKIYFKDEPRRKVTFEYVMLKGVNDQPEHATQLIK 284 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L+ +PAK+NLIPFNP+P +Y S Q I F + + +G ++ R RG DI AACGQ Sbjct: 285 LLRDVPAKVNLIPFNPFPMTQYQRSSQAAIDAFRDKLIANGINTITRKTRGDDIDAACGQ 344 Query: 365 LKSLSK-RIPKVPR 377 L K R + R Sbjct: 345 LAGEVKDRTSRSQR 358 >gi|254490112|ref|ZP_05103304.1| radical SAM enzyme, Cfr family [Methylophaga thiooxidans DMS010] gi|224464700|gb|EEF80957.1| radical SAM enzyme, Cfr family [Methylophaga thiooxydans DMS010] Length = 367 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 164/381 (43%), Positives = 233/381 (61%), Gaps = 24/381 (6%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 + +L+G+ + LE +++G R Q+ +WI+ + DF M+++S+ +R Sbjct: 1 MTQSTNLLGLDLKGLEAFFVELG----EKPFRARQLLQWIHKYRVVDFAEMTNLSKALRE 56 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L I PE++ E IS DGTRKW+++ IETV+IPE RGTLCVSSQV Sbjct: 57 KLQAVSDIRLPEVLHEHISTDGTRKWIIKLSC-----GNAIETVFIPEGGRGTLCVSSQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+LTC+FC T Q RNL A EI+ Q+ +A LG P R ++N+ Sbjct: 112 GCALTCTFCSTAQQGFNRNLDAAEIIAQLWIANEALGKD-----------PKGNRVVTNV 160 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL N++NV ++++ D G S RR+TLSTSG VP I ++ E+ V LAIS Sbjct: 161 VMMGMGEPLANYNNVVTAMNLMRDDYGYGISWRRLTLSTSGIVPMIDKLREDCHVSLAIS 220 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +++LR+ +VPIN+KYP++ L+ AC+ Y R IT EYVML GINDS +DA +L Sbjct: 221 LHAANDELRDQIVPINQKYPIKELLAACKRYVVGQQRRHITVEYVMLDGINDSMQDAKDL 280 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++ILK +P KIN+IPFNP+PG +Y CS + I F + G + +R RG DI+AAC Sbjct: 281 VRILKDLPTKINMIPFNPFPGTDYTCSSRNQIKRFQNYLIEQGMVATVRKTRGDDIVAAC 340 Query: 363 GQLKS----LSKRIPKVPRQE 379 GQL S+R ++ +Q+ Sbjct: 341 GQLAGEVQDKSRRAERMAKQQ 361 >gi|92114968|ref|YP_574896.1| hypothetical protein Csal_2851 [Chromohalobacter salexigens DSM 3043] gi|123387343|sp|Q1QTL1|RLMN_CHRSD RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|91798058|gb|ABE60197.1| 23S rRNA m(2)A-2503 methyltransferase [Chromohalobacter salexigens DSM 3043] Length = 375 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 160/380 (42%), Positives = 225/380 (59%), Gaps = 22/380 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 + +L+G+ REE+E + +G + R +Q+ KWI+ G DF M+++S+ +R L Sbjct: 8 PRTNLLGLTREEMESFFVSLG----EKKFRAAQVMKWIHHEGCADFASMTNLSKALRTRL 63 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS--RGTLCVSSQV 122 + I P +V E S DGTRKW+L +ETV IP + R TLCVSSQV Sbjct: 64 EELAEIRGPRVVYEGTSQDGTRKWVLEVED-----GSYVETVLIPAEGGKRRTLCVSSQV 118 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GCSL CSFC TG Q RNLT+ EI+ QV +A + G + R ++N+ Sbjct: 119 GCSLDCSFCSTGKQGFQRNLTSAEIIGQVWVASNSFG----------ARRDTTNRPVTNV 168 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL N+DNV ++ + D G SKRR+TLSTSG VP + ++G+E+ V LA+S Sbjct: 169 VMMGMGEPLLNYDNVVPAMKLMLDDNGYGLSKRRVTLSTSGVVPKLDQLGDELDVSLAVS 228 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALN 301 LHA +++LRN LVP+NRKY + L+DACR Y + R+ T EY ++K +ND A Sbjct: 229 LHAANDELRNELVPLNRKYNIATLLDACRRYLAKCDDTRMLTIEYTLIKDVNDQQHHAEE 288 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L +L +P+KINLIPFNP+P Y + ++ F + + GY++ +RT RG DI AA Sbjct: 289 LAALLADLPSKINLIPFNPFPHSGYEKPSRNQVMRFQQWLYDLGYTALVRTTRGDDIDAA 348 Query: 362 CGQLKSLSKRIPKVPRQEMQ 381 CGQL K K + +Q Sbjct: 349 CGQLVGRVKDRTKRHERYIQ 368 >gi|315634916|ref|ZP_07890198.1| cfr family radical SAM enzyme [Aggregatibacter segnis ATCC 33393] gi|315476468|gb|EFU67218.1| cfr family radical SAM enzyme [Aggregatibacter segnis ATCC 33393] Length = 384 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 153/378 (40%), Positives = 216/378 (57%), Gaps = 23/378 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R ++ E ++G R Q+ KWIY G +F M+++++++R L Sbjct: 16 KKVNLMNLTRAQMREFFAELG----EKPFRADQLVKWIYHFGEDNFDNMTNLNKKLREKL 71 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+ E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC Sbjct: 72 KSVAEIKAPEVAVEQRSADGTIKWAMQVGD------QQVETVYIPEADRATLCVSSQVGC 125 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F + R I+N+VM Sbjct: 126 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 175 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH Sbjct: 176 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 235 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ +VP+N+KY ++ LID+ Y +SNA ++T EYVML +ND A L Sbjct: 236 APNDELRDEIVPLNKKYNIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHVNDHVEHAHQL 295 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+P Y S I F + + G + +R RG DI AAC Sbjct: 296 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGLTVIVRKTRGDDIDAAC 355 Query: 363 GQLKSLS-KRIPKVPRQE 379 GQL R + +++ Sbjct: 356 GQLAGDVIDRTKRTAQKK 373 >gi|37525329|ref|NP_928673.1| hypothetical protein plu1373 [Photorhabdus luminescens subsp. laumondii TTO1] gi|81419944|sp|Q7N709|RLMN_PHOLL RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|36784756|emb|CAE13666.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 392 Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats. Identities = 160/377 (42%), Positives = 218/377 (57%), Gaps = 23/377 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ + + +G R Q+ KWIY DF+ M+DI++ +R L Sbjct: 25 KINLLDLNRKQMRQFFIDMG----EKPFRADQVMKWIYHYCYDDFEQMTDINKILRAKLQ 80 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 Q I PE+ +E+ S DGT KW + ++ETVYIPE R TLCVSSQVGC+ Sbjct: 81 QVAEIRAPEVAEEQRSADGTIKWAITVGD------QQVETVYIPEDDRATLCVSSQVGCA 134 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + S R I+N+VMM Sbjct: 135 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------SLKSSGRRPITNVVMM 184 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 185 GMGEPLLNLNNVVPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 244 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++D+R+ +VPINRKY +E + R Y SNA R+T EYVML INDS A L Sbjct: 245 PTDDVRDDIVPINRKYNIEQFLAGVRRYLTKSNANQGRVTVEYVMLDHINDSVEQAHQLA 304 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 + LK P+KINLIP+NP+PG Y S I F++ + G+++ +R RG DI AACG Sbjct: 305 ECLKETPSKINLIPWNPFPGAPYGRSSNSRIDRFAKVLMEYGFTTIVRKTRGDDIDAACG 364 Query: 364 QLKSLS-KRIPKVPRQE 379 QL R + ++ Sbjct: 365 QLAGDVIDRTKRTLKKR 381 >gi|329123609|ref|ZP_08252169.1| cfr family radical SAM enzyme [Haemophilus aegyptius ATCC 11116] gi|327469808|gb|EGF15273.1| cfr family radical SAM enzyme [Haemophilus aegyptius ATCC 11116] Length = 390 Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats. Identities = 159/379 (41%), Positives = 219/379 (57%), Gaps = 24/379 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L Sbjct: 21 KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 76 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC Sbjct: 77 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 130 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F + R I+N+VM Sbjct: 131 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH Sbjct: 181 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 240 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ +VPIN+KY ++ LID+ Y +SNA ++T EYVML +ND A L Sbjct: 241 APNDELRDEIVPINKKYNIKTLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQL 300 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+P Y S I F + + G++ IR RG DI AAC Sbjct: 301 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAAC 360 Query: 363 GQLKSLSKRIPKVPRQEMQ 381 GQL I + R M+ Sbjct: 361 GQLAGDV--IDRTKRTAMK 377 >gi|114327110|ref|YP_744267.1| radical SAM protein [Granulibacter bethesdensis CGDNIH1] gi|122327908|sp|Q0BV08|RLMN_GRABC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|114315284|gb|ABI61344.1| radical SAM family enzyme [Granulibacter bethesdensis CGDNIH1] Length = 397 Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats. Identities = 190/372 (51%), Positives = 252/372 (67%), Gaps = 18/372 (4%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 ++ L+G+ RE+L EAL +IG P R Q+W WIY RG DF+ MS I++ + L Sbjct: 41 RKDLVGLSREQLTEALAEIGFPA----FRAKQLWHWIYHRGETDFRVMSSIAKPQQETLA 96 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK--SRGTLCVSSQVG 123 + F I P + + S D TRKWL RF E ETVYIP+ RG +C+SSQVG Sbjct: 97 ERFVISRPAVTECLTSVDETRKWLFRFRD-----GQEAETVYIPDPVEDRGAVCISSQVG 151 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L+C FC+TGTQ LVRNL EI+ Q + AR G++P + R +S IV Sbjct: 152 CTLSCRFCHTGTQPLVRNLGPAEIVGQFMAARDAYGEWPSPKG-------ETPRLLSTIV 204 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 +MGMGEPL N++NVK+++ I D G++ S+RRITLSTSG VP + R G E+ V LAISL Sbjct: 205 LMGMGEPLYNYENVKQAMRIVMDGDGIALSRRRITLSTSGVVPMMDRCGTELAVNLAISL 264 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HAV+++LR+ LVP+NRKYP+ LI ACR YP SNARRITFEY+ML GINDS +A L+ Sbjct: 265 HAVTDELRDELVPLNRKYPIRELIAACRRYPAASNARRITFEYIMLDGINDSEAEARELV 324 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +++ GIPAK+NLIPFNPWPG +Y S K + FS + +G++SPIRTPRG DILAACG Sbjct: 325 RLIAGIPAKVNLIPFNPWPGSQYTPSRPKALERFSRIVMEAGFASPIRTPRGRDILAACG 384 Query: 364 QLKSLSKRIPKV 375 QL++ S++ ++ Sbjct: 385 QLRTESRKERRI 396 >gi|256823058|ref|YP_003147021.1| radical SAM enzyme, Cfr family [Kangiella koreensis DSM 16069] gi|256796597|gb|ACV27253.1| radical SAM enzyme, Cfr family [Kangiella koreensis DSM 16069] Length = 374 Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 166/377 (44%), Positives = 227/377 (60%), Gaps = 21/377 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+E+ E +++G R Q+ KW++ G+ DF M++IS+ R L Sbjct: 4 EKTNLLNLTRDEMVEFFVELG----EKPFRAQQVMKWVHQFGVEDFDEMTNISKVCRERL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE++ + S DGT KW L+ P G +E V+IPE+ RGTLCVSSQVGC Sbjct: 60 KDVAEIKGPEVLSVQESKDGTVKWALKIP-----GGQAVEMVFIPERHRGTLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC TG Q RNLT EI+ QV LA L S R ++N+VM Sbjct: 115 ALECTFCSTGYQGFNRNLTTAEIIGQVWLAARYL----------HGKHKSDERVVTNVVM 164 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFD V KS+ + D + SKRR+TLSTSG VP + R+ +E+ V LAISLH Sbjct: 165 MGMGEPLANFDPVVKSMQLMMDDLAYGLSKRRVTLSTSGMVPQLDRLIDEVDVALAISLH 224 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLI 303 A ++ LR++LVPIN+KYP++ L+ + Y SNA R T EYVMLK +ND+ + A L Sbjct: 225 APNDALRDVLVPINKKYPIKELMASVHRYLDRSNAARKATIEYVMLKDVNDTLQHAKELA 284 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK P KINLIPFNP+P Y S Q+ I FS+ + + GY R RG DI AACG Sbjct: 285 ELLKNTPCKINLIPFNPFPQANYQTSTQEAIDLFSDYLIKKGYVVVTRRTRGDDIDAACG 344 Query: 364 QLKSL-SKRIPKVPRQE 379 QL + + + R++ Sbjct: 345 QLAGKINDKTKRQERRQ 361 >gi|68248968|ref|YP_248080.1| ribosomal RNA large subunit methyltransferase N [Haemophilus influenzae 86-028NP] gi|81336620|sp|Q4QNH7|RLMN_HAEI8 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|68057167|gb|AAX87420.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae 86-028NP] Length = 390 Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 159/379 (41%), Positives = 219/379 (57%), Gaps = 24/379 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L Sbjct: 21 KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 76 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC Sbjct: 77 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 130 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F + R I+N+VM Sbjct: 131 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH Sbjct: 181 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 240 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ +VPIN+KY ++ LID+ Y +SNA ++T EYVML +ND A L Sbjct: 241 APNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGIEHAHQL 300 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+P Y S I F + + G++ IR RG DI AAC Sbjct: 301 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAAC 360 Query: 363 GQLKSLSKRIPKVPRQEMQ 381 GQL I + R M+ Sbjct: 361 GQLAGDV--IDRTKRTAMK 377 >gi|319763716|ref|YP_004127653.1| radical sam enzyme, cfr family [Alicycliphilus denitrificans BC] gi|317118277|gb|ADV00766.1| radical SAM enzyme, Cfr family [Alicycliphilus denitrificans BC] Length = 374 Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 151/382 (39%), Positives = 214/382 (56%), Gaps = 25/382 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+ + + + ++G R R +Q+++WI+ RG DF MSD+++ +R L Sbjct: 3 TNLLDLDLDAMAAFCERLG----EKRFRATQLFRWIHQRGASDFDQMSDLAKSLREKLKG 58 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + + + E S DGT KWL +GG +ETV+IPE RGTLC+SSQ GC++ Sbjct: 59 CAHVSGLQAISEHASADGTVKWLF-----DVGGGNAVETVFIPEDDRGTLCISSQAGCAV 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG Q RNLT EI+ Q+ A +L G R ISN+VMMG Sbjct: 114 GCRFCSTGHQGFSRNLTTGEIVAQLWHAEHVLRQRRG----------DGERVISNVVMMG 163 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N+ + +L I D G S+RR+T+STSG VP + R+G + V LA+SLHA Sbjct: 164 MGEPLQNYSALVPALRIMLDDHGYGLSRRRVTVSTSGVVPMMDRLGRDCPVALAVSLHAP 223 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 +++LR+ LVP+NRKYPL+ L+ ACR Y + ITFEY ML G+ND P A LI ++ Sbjct: 224 NDELRDNLVPLNRKYPLQELLAACRRYLEHAPRDFITFEYCMLDGVNDQPEHARELIALV 283 Query: 307 K------GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 G+ K NLIPFNP+P S + F++ + +G + +R RG DI A Sbjct: 284 SRKAADGGVSCKFNLIPFNPFPASGLRRSPAAAVSAFAKLLSDAGIVTTVRKTRGDDIDA 343 Query: 361 ACGQLKSLSKRIPKVPRQEMQI 382 ACGQL K +V + ++ Sbjct: 344 ACGQLAGDVKDRTRVGERMARL 365 >gi|237807659|ref|YP_002892099.1| ribosomal RNA large subunit methyltransferase N [Tolumonas auensis DSM 9187] gi|259491997|sp|C4LC34|RLMN_TOLAT RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|237499920|gb|ACQ92513.1| radical SAM enzyme, Cfr family [Tolumonas auensis DSM 9187] Length = 373 Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 159/385 (41%), Positives = 213/385 (55%), Gaps = 25/385 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K +L+ R L R QI KWIY G DF M+++++ +R L Sbjct: 4 NKVNLLDFDRNALRAFFAD---ELGEKAFRADQIMKWIYHFGCDDFSQMTNVNKALREKL 60 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PEI E+ S DGT KW +R E+ETVYIPE R TLCVSSQVGC Sbjct: 61 ARIAEIRAPEISTEQRSSDGTIKWAMRVGD------QEVETVYIPEADRATLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC TG Q RNLT EI+ QV A ++G + R I+N+VM Sbjct: 115 ALECKFCSTGQQGFNRNLTVSEIIGQVWRAAQVVG----------FPKDTGKRVITNVVM 164 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N N+ +LS+ + G SKRR+T+STSG VP + ++G+ I V LAISLH Sbjct: 165 MGMGEPLLNLSNLVPALSLMMEDFGFGLSKRRVTVSTSGVVPALDKLGDMIDVALAISLH 224 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++ LR+ ++PIN KY ++ + + + Y SNA R+T EYV+L +ND A L Sbjct: 225 APNDKLRSEIMPINDKYNIQEFLGSVQRYLSKSNANHGRVTVEYVLLDHVNDDMEHAREL 284 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P+KINLIPFNP+P Y + FS+ + GY+ +R RG DI AAC Sbjct: 285 AELLKDTPSKINLIPFNPFPSNPYGKPSNSRVDRFSKVLMEYGYTVIVRKTRGDDIDAAC 344 Query: 363 GQLKS----LSKRIPKVPRQEMQIT 383 GQL +KR K QE +I+ Sbjct: 345 GQLVGDVIDRTKRTMKKRMQEQEIS 369 >gi|145628721|ref|ZP_01784521.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae 22.1-21] gi|144979191|gb|EDJ88877.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae 22.1-21] Length = 383 Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats. Identities = 159/379 (41%), Positives = 219/379 (57%), Gaps = 24/379 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L Sbjct: 14 KKINLMDLTRQQMREFFKQLG----EKPFRADQLVKWIYHFGEDNFDKMTNINKKLREKL 69 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC Sbjct: 70 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F + R I+N+VM Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ +VPIN+KY ++ LID+ Y +SNA ++T EYVML +ND A L Sbjct: 234 APNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGIEHAHQL 293 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+P Y S I F + + G++ IR RG DI AAC Sbjct: 294 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAAC 353 Query: 363 GQLKSLSKRIPKVPRQEMQ 381 GQL I + R M+ Sbjct: 354 GQLAGDV--IDRTKRTAMK 370 >gi|293391771|ref|ZP_06636105.1| cfr family radical SAM enzyme [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952305|gb|EFE02424.1| cfr family radical SAM enzyme [Aggregatibacter actinomycetemcomitans D7S-1] Length = 379 Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats. Identities = 154/378 (40%), Positives = 215/378 (56%), Gaps = 23/378 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R ++ E ++G R Q+ KWIY G +F M+++++ +R L Sbjct: 11 KKVNLMNLTRAQMREFFAELG----EKPFRADQLVKWIYHFGEDNFDNMTNLNKALREKL 66 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+ E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC Sbjct: 67 KTMAEIKAPEVAVEQRSADGTIKWAMQVGD------QQVETVYIPEADRATLCVSSQVGC 120 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F + R I+N+VM Sbjct: 121 ALACTFCSTAQQGFNRNLTVAEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 170 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH Sbjct: 171 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 230 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ +VP+N+KY ++ LID+ Y +SNA ++T EYVML IND A L Sbjct: 231 APNDELRDEIVPLNKKYNIKNLIDSVNRYLSVSNANHGKVTIEYVMLDHINDHVEHAHQL 290 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+P Y S I F + + G + +R RG DI AAC Sbjct: 291 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGLTVIVRKTRGDDIDAAC 350 Query: 363 GQLKSLS-KRIPKVPRQE 379 GQL R + +++ Sbjct: 351 GQLAGDVIDRTKRTAQKK 368 >gi|326559876|gb|EGE10276.1| Cfr family radical SAM protein [Moraxella catarrhalis 7169] gi|326569638|gb|EGE19690.1| Cfr family radical SAM protein [Moraxella catarrhalis BC1] Length = 395 Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats. Identities = 160/382 (41%), Positives = 226/382 (59%), Gaps = 29/382 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+GM ++EL + +G R +Q+ KWIY G+ DF M++IS+++++ L Sbjct: 18 KKVNLLGMSKDELSAFFVSLG----EKSFRATQVMKWIYQFGVTDFFEMTNISKKLQYKL 73 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVS 119 ++ ++ P + ++ S DGTRKW+ + G +ETV IP R TLC+S Sbjct: 74 HEVACVVPPTVKYKEFSQDGTRKWVFE-----VAGGSLVETVLIPADDGKQFGRKTLCIS 128 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 SQVGC+L CSFC TG Q R+LT EI+ Q+ +A + + E ++ Sbjct: 129 SQVGCALDCSFCSTGKQGFERDLTPSEIIGQLWVANQSYMENVPPTEREN--------RV 180 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 +N+VMMGMGEPL N+D V S+S+ D SKRR+TLSTSG VP + + ++I V L Sbjct: 181 TNVVMMGMGEPLLNYDPVVASMSLMLDDHAFGLSKRRVTLSTSGVVPKMYDLAKDIDVAL 240 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP---GLSNARRITFEYVMLKGINDSP 296 AISLHA +++LRN LVPIN+KYPL+ LI A + Y + + IT EYVML G+NDS Sbjct: 241 AISLHAPNDELRNELVPINKKYPLKDLIKAAKSYVYDENPRHKKHITIEYVMLAGVNDSD 300 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 A L+ +LK +P+KINLIPFNP+P Y S I FS + ++G+ IR RG Sbjct: 301 EHAHQLVDLLKDLPSKINLIPFNPFPHAPYGRSSNNRIHAFSHILNQAGFVCTIRQTRGD 360 Query: 357 DILAACGQL----KSLSKRIPK 374 DI AACGQL ++R K Sbjct: 361 DIDAACGQLVGQVADRTRRAKK 382 >gi|297538107|ref|YP_003673876.1| radical SAM enzyme, Cfr family [Methylotenera sp. 301] gi|297257454|gb|ADI29299.1| radical SAM enzyme, Cfr family [Methylotenera sp. 301] Length = 374 Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats. Identities = 156/384 (40%), Positives = 223/384 (58%), Gaps = 18/384 (4%) Query: 1 MNFLKKE--SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQ 58 M KK +L+ + +L + + G R Q+ +W++ G+ DF+ M+DI++ Sbjct: 1 MIQGKKILVNLLNFNQPQLAKWFAEQG----EKPFRAKQLMRWMHHFGVYDFEQMTDIAK 56 Query: 59 EVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118 +R L I P + E++S DGTRKWL+ IETV+IPE RGTLC+ Sbjct: 57 VLREKLVVDAEITLPNVQLEQVSNDGTRKWLI-----GTDTANSIETVFIPEDDRGTLCI 111 Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 SSQVGC+L C+FC TG Q RNL+ EI+ Q+ +A L G + ++ + R Sbjct: 112 SSQVGCALECTFCSTGRQGFNRNLSVSEIIGQLAIANQSLRQESGYD-----LLSANDRI 166 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238 ISN+VMMGMGEPL N+DNV ++ I D S+RR+TLSTSG VP + R+ E+ V Sbjct: 167 ISNVVMMGMGEPLANYDNVVTAMQIMLDDNAYGLSRRRVTLSTSGMVPAMDRLKEDCPVA 226 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLHA ++ LR+++VPIN+KYPL+ L+ AC Y + +TFEYVML G+ND+ Sbjct: 227 LAVSLHAPNDALRDVIVPINKKYPLKELMAACNRYLEKAPRDFVTFEYVMLDGVNDTVEH 286 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L+ +++ + K NLIPFNP+P Y S I F + + ++GY +R RG DI Sbjct: 287 AHQLLDLVRNVSCKFNLIPFNPFPNSGYDTSKASHIRVFRDILMQAGYVVTVRKTRGEDI 346 Query: 359 LAACGQLKSLSKRIPKVPRQEMQI 382 AACGQL + K R +I Sbjct: 347 DAACGQLAGKV--LDKTKRTANRI 368 >gi|240950291|ref|ZP_04754566.1| hypothetical protein AM305_03483 [Actinobacillus minor NM305] gi|240295193|gb|EER46001.1| hypothetical protein AM305_03483 [Actinobacillus minor NM305] Length = 386 Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats. Identities = 163/378 (43%), Positives = 218/378 (57%), Gaps = 23/378 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ M R ++ E L +G R Q+ KWIY G +F MS+I++ +R L Sbjct: 18 EKVNLMNMTRPQMREFLASLG----EKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKL 73 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q I PE+ E+ S DGT KW ++ G +IETVYIPE R TLCVSSQVGC Sbjct: 74 KQVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQIETVYIPEADRATLCVSSQVGC 127 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNL EI+ QV A ++G+F + R I+N+VM Sbjct: 128 ALACTFCSTAQQGFNRNLNVAEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 177 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D SKRR+TLSTSG VP + + E+I V LAISLH Sbjct: 178 MGMGEPLLNVNNVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDGLREKIDVALAISLH 237 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++++R+ +VPIN+KY ++MLID+ Y +SNA ++T EYVML IND A L Sbjct: 238 APNDEIRDEIVPINKKYNIKMLIDSVNKYLEVSNANHGKVTIEYVMLDHINDEVDHAHQL 297 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K+LK P KINLIP+NP+P Y S I F + + G++ IR RG DI AAC Sbjct: 298 AKVLKNTPCKINLIPWNPFPEAPYAKSSNSRIDRFQKALMEYGFTVTIRKTRGDDIDAAC 357 Query: 363 GQLKSLS-KRIPKVPRQE 379 GQL R + + Sbjct: 358 GQLAGDVIDRTKRTLEKR 375 >gi|33602154|ref|NP_889714.1| hypothetical protein BB3178 [Bordetella bronchiseptica RB50] gi|81579923|sp|Q7WHM8|RLMN_BORBR RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|33576592|emb|CAE33670.1| conserved hypothetical protein [Bordetella bronchiseptica RB50] Length = 382 Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats. Identities = 149/383 (38%), Positives = 215/383 (56%), Gaps = 9/383 (2%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +++ +L+G+ L E + + G R Q+ +W++ RG F M+D++++ Sbjct: 1 MESVERVNLLGLDGAALSELVGQWG----GKPFRARQLQRWVHQRGADSFDAMTDLARDF 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L + I + E+ S DGTRKWL +G IETV+IPE RGTLC+SS Sbjct: 57 RAQLARDCVIEALPVNTEQRSSDGTRKWLF-----DVGQGNAIETVFIPEDDRGTLCISS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC + C FC TG Q RNL A EI+ Q+ A+ +L + G R IS Sbjct: 112 QAGCVVNCRFCSTGHQGFNRNLRASEIIGQLWWAKRVLEAAADTARLPGGKAGEDTRVIS 171 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+D V +L + D S+RR+T+STSG VP + R+ ++ V LA Sbjct: 172 NVVMMGMGEPLLNYDQVLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPVALA 231 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++ LR+ LVP+NRKYPL L+ AC Y + ITFEY ML GIND+ + A Sbjct: 232 VSLHAPNDALRDELVPLNRKYPLNALLAACERYLAHAPRDFITFEYCMLDGINDTDQHAR 291 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 LI++ + + K+NLIPFNP+P S + F++ + +G + +R RG DI A Sbjct: 292 ELIQLARQVRCKLNLIPFNPFPASGLKRSPSARVRVFAQRLMDAGIVTTVRKTRGDDIDA 351 Query: 361 ACGQLKSLSKRIPKVPRQEMQIT 383 ACGQL + ++ + T Sbjct: 352 ACGQLAGEVRDRTRITERNATRT 374 >gi|304320170|ref|YP_003853813.1| hypothetical protein PB2503_02977 [Parvularcula bermudensis HTCC2503] gi|303299073|gb|ADM08672.1| hypothetical protein PB2503_02977 [Parvularcula bermudensis HTCC2503] Length = 382 Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats. Identities = 189/379 (49%), Positives = 258/379 (68%), Gaps = 16/379 (4%) Query: 5 KKESLIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++ L G+ R L+ +G+ + +MR SQ+W+WIY G+R+F M++I + +R Sbjct: 15 QRRRLFGLSRAALQSLFAADLGLAPKAAKMRASQVWQWIYSHGVREFDQMTNIGKALRAQ 74 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQV 122 ++ + + PE+ + ++S DGTRK+L+RF +E E V+IP R G LCVSSQV Sbjct: 75 MDALYDLSRPEVAERQVSQDGTRKYLIRFAP-----GIEAEAVFIPGVGRAGALCVSSQV 129 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L C+FC+TGTQ LVRNLTAEEI+ Q+++ + LG++P D R++SNI Sbjct: 130 GCTLNCTFCHTGTQALVRNLTAEEIIAQIIVCKDDLGEWPSSRD---------DRQLSNI 180 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 V MGMGEPL N D V +++ I +D G+S S+RRIT+STSG V + +GE MLAIS Sbjct: 181 VFMGMGEPLYNLDAVAQAIDIIADGEGISISRRRITVSTSGVVSQMRALGERTEAMLAIS 240 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA + LRN LVPIN+K+PL+ L+ ACR YPG SNA+RITFEYVMLKGINDS +A L Sbjct: 241 LHATHDALRNELVPINKKWPLDALLAACRDYPGTSNAKRITFEYVMLKGINDSDAEAREL 300 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +++L+GIPAKINLIPFNPWP Y CS I F++ + ++GY+SPIRTPRG DI AAC Sbjct: 301 VRLLRGIPAKINLIPFNPWPDSPYECSSWDRIERFADIVNQAGYASPIRTPRGRDISAAC 360 Query: 363 GQLKSLSKRIPKVPRQEMQ 381 GQLKS S + R+ + Sbjct: 361 GQLKSESVKERASARRRTE 379 >gi|332992286|gb|AEF02341.1| ribosomal RNA large subunit methyltransferase N [Alteromonas sp. SN2] Length = 372 Score = 451 bits (1160), Expect = e-125, Method: Composition-based stats. Identities = 163/384 (42%), Positives = 226/384 (58%), Gaps = 22/384 (5%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K +L+ + RE L + G R Q+ KWIY +G DF+ MS++++ +R + Sbjct: 1 MAKTNLLNLNREGLRNFFKEKG----EKPFRADQVMKWIYQQGESDFEKMSNLNKNLRAM 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +H + PEI + + DGT K+ L G E+ETV+IPE R TLCVSSQVG Sbjct: 57 LIEHCEVKAPEIAYFQEASDGTIKFALALE-----GGQEVETVWIPEADRATLCVSSQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L C+FC T Q RNL+ EI+ QV + LG + + R I+N+V Sbjct: 112 CALECTFCSTAQQGFNRNLSVSEIIGQVWRVATFLG----------LSKDTSKRPITNVV 161 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N NV +++I D G SKRR+TLSTSG VP + +G++I V LAISL Sbjct: 162 MMGMGEPLLNLKNVVPAMNIMLDDFGFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISL 221 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPRDALN 301 HA +++LRN +VP+N+KY +E + R Y S N R+T EYVML INDS A Sbjct: 222 HAPNDELRNEIVPVNKKYNIEAFLAGVRRYLEKSKANQGRVTVEYVMLSHINDSTDQAHE 281 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L K+LK P KINLIPFNP+PG YLCS I FS+ + G+++ +R RG DI AA Sbjct: 282 LAKVLKDTPCKINLIPFNPYPGSPYLCSSNSRIDRFSKVLMDYGFTTVVRKTRGDDIDAA 341 Query: 362 CGQL-KSLSKRIPKVPRQEMQITG 384 CGQL + R ++ +++++ Sbjct: 342 CGQLVGDVVDRTKRLLKKQVKGEA 365 >gi|33593205|ref|NP_880849.1| hypothetical protein BP2201 [Bordetella pertussis Tohama I] gi|81578506|sp|Q7VWK8|RLMN_BORPE RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|33563580|emb|CAE42479.1| conserved hypothetical protein [Bordetella pertussis Tohama I] gi|332382616|gb|AEE67463.1| hypothetical protein BPTD_2167 [Bordetella pertussis CS] Length = 382 Score = 451 bits (1160), Expect = e-125, Method: Composition-based stats. Identities = 148/383 (38%), Positives = 215/383 (56%), Gaps = 9/383 (2%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +++ +L+G+ L E + + G R Q+ +W++ RG F M+D++++ Sbjct: 1 MEAVERVNLLGLDGAALSELVGQWG----GKPFRARQLQRWVHQRGADSFDAMTDLARDF 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L + I + E+ S DGTRKWL +G IETV+IPE RGTLC+SS Sbjct: 57 RAQLARDCVIEALPVNTEQRSSDGTRKWLF-----DVGQGNAIETVFIPEDDRGTLCISS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC + C FC TG Q RNL A EI+ Q+ A+ +L + G R IS Sbjct: 112 QAGCVVNCRFCSTGHQGFNRNLRASEIIGQLWWAKRVLEAAADTARLPGGKAGEDTRVIS 171 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+D V +L + D S+RR+T+STSG VP + R+ ++ V LA Sbjct: 172 NVVMMGMGEPLLNYDQVLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPVALA 231 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++ LR+ LVP+N+KYPL L+ AC Y + ITFEY ML GIND+ + A Sbjct: 232 VSLHAPNDALRDELVPLNKKYPLNALLAACERYLAHAPRDFITFEYCMLDGINDTDQHAR 291 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 LI++ + + K+NLIPFNP+P S + F++ + +G + +R RG DI A Sbjct: 292 ELIQLARQVRCKLNLIPFNPFPASGLKRSPSARVRVFAQRLMDAGIVTTVRKTRGDDIDA 351 Query: 361 ACGQLKSLSKRIPKVPRQEMQIT 383 ACGQL + ++ + T Sbjct: 352 ACGQLAGEVRDRTRITERNATRT 374 >gi|257465082|ref|ZP_05629453.1| hypothetical protein AM202_01135 [Actinobacillus minor 202] gi|257450742|gb|EEV24785.1| hypothetical protein AM202_01135 [Actinobacillus minor 202] Length = 386 Score = 451 bits (1160), Expect = e-125, Method: Composition-based stats. Identities = 163/378 (43%), Positives = 218/378 (57%), Gaps = 23/378 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ M R ++ E L +G R Q+ KWIY G +F MS+I++ +R L Sbjct: 18 EKVNLMNMTRPQMREFLASLG----EKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKL 73 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q I PE+ E+ S DGT KW ++ G +IETVYIPE R TLCVSSQVGC Sbjct: 74 KQVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQIETVYIPEADRATLCVSSQVGC 127 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNL EI+ QV A ++G+F + R I+N+VM Sbjct: 128 ALACTFCSTAQQGFNRNLNVAEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 177 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D SKRR+TLSTSG VP + + E+I V LAISLH Sbjct: 178 MGMGEPLLNVNNVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDGLREKIDVALAISLH 237 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++++R+ +VPIN+KY +EMLI++ Y +SNA ++T EYVML IND A L Sbjct: 238 APNDEIRDEIVPINKKYNIEMLINSVNKYLEVSNANHGKVTIEYVMLDHINDEVDHAHQL 297 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K+LK P KINLIP+NP+P Y S I F + + G++ IR RG DI AAC Sbjct: 298 AKVLKNTPCKINLIPWNPFPEAPYAKSSNSRIDRFQKALMEYGFTVTIRKTRGDDIDAAC 357 Query: 363 GQLKSLS-KRIPKVPRQE 379 GQL R + + Sbjct: 358 GQLAGDVIDRTKRTLEKR 375 >gi|103486196|ref|YP_615757.1| hypothetical protein Sala_0703 [Sphingopyxis alaskensis RB2256] gi|122985201|sp|Q1GV98|RLMN_SPHAL RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|98976273|gb|ABF52424.1| conserved hypothetical protein [Sphingopyxis alaskensis RB2256] Length = 420 Score = 451 bits (1160), Expect = e-125, Method: Composition-based stats. Identities = 199/399 (49%), Positives = 257/399 (64%), Gaps = 25/399 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 + L+G+ R+ + L++ G+ + ++R QIW WIY RG+ DF GM+DI++ +R L Sbjct: 21 NRIDLVGLSRDAIGGVLVEAGLDAKAAKLRAKQIWHWIYHRGVTDFMGMTDIAKAMRPWL 80 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 F I P + + ++S DGTRKWLL E E V+IP+ RGTLCVSSQVGC Sbjct: 81 TDRFIIGRPTVREAQVSSDGTRKWLL-----AAADGQEYEMVFIPDADRGTLCVSSQVGC 135 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMV------------- 171 +L C FC+TGT +LVRNL A EI+ QVLLAR LG++P Sbjct: 136 TLNCRFCHTGTMRLVRNLGAGEIVGQVLLARDALGEWPKGNMAGFGAGSDADPEDDDADD 195 Query: 172 -----IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226 + GR ++NIVMMGMGEPL NFD VK +L I D GL+ SKRRITLSTSG VP Sbjct: 196 DAVGHYTADGRMLTNIVMMGMGEPLYNFDEVKAALKIVMDGDGLALSKRRITLSTSGVVP 255 Query: 227 NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286 +AR GEEIGV LA+SLHAVS ++R+ +VP+NRKY +E L+ AC YPG +NARRITFEY Sbjct: 256 MMARAGEEIGVNLAVSLHAVSKEIRDEIVPLNRKYGIEELLQACADYPGANNARRITFEY 315 Query: 287 VMLKGINDSPRDALNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRS 344 VMLK ND DA L++++K +PAK+NLIPFNPWPG Y CS + + FS I ++ Sbjct: 316 VMLKDKNDRDEDARELVRLIKQYKLPAKVNLIPFNPWPGAPYECSTPERVRAFSNLIFKA 375 Query: 345 GYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQIT 383 G S+PIRTPRG DI+AACGQLKS + R + + Sbjct: 376 GISAPIRTPRGRDIMAACGQLKSAATRPTRAELDRIAEE 414 >gi|291613878|ref|YP_003524035.1| radical SAM enzyme, Cfr family [Sideroxydans lithotrophicus ES-1] gi|291583990|gb|ADE11648.1| radical SAM enzyme, Cfr family [Sideroxydans lithotrophicus ES-1] Length = 359 Score = 451 bits (1160), Expect = e-125, Method: Composition-based stats. Identities = 154/377 (40%), Positives = 219/377 (58%), Gaps = 20/377 (5%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++L+ + + G R Q+ +WIY G DF MSD++ +R L Sbjct: 2 QNLLDFEPAAMTAWFAEHG----EKPFRARQVLRWIYKGGESDFDAMSDLAISLREKLKL 57 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I P+++ E+ + DGTRKWLL +G +ETV+IPE+ RGTLCVS+Q GC+L Sbjct: 58 IACIQSPKVMREETASDGTRKWLL-----DVGTGNAVETVFIPEEGRGTLCVSTQAGCAL 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC TG Q RNL+ EI+ QV A LG ++N+V+MG Sbjct: 113 DCAFCSTGKQGFNRNLSTAEIIGQVWWANRELGKD-----------ADGNWPVTNVVLMG 161 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL NFDN +L + D S+RR+T+STSG VP + R+ +E V LAISLHA Sbjct: 162 MGEPLLNFDNTVNALRLMLDDNAYGLSRRRVTVSTSGVVPAMDRLRDECPVALAISLHAP 221 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ LRN+LVPIN+KYPL+ L+ AC+ Y + +TFEYVML G+NDS + A LI+++ Sbjct: 222 NDALRNVLVPINQKYPLQELMAACQRYLEKAPRDFVTFEYVMLAGVNDSVQHARELIELV 281 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + +P K NLIPFNP+P Y SD ++ F + + ++G + IR RG DI AACGQL Sbjct: 282 RDVPCKFNLIPFNPFPQAPYQRSDMPTVLRFRDVLMQAGIVTTIRKVRGDDIAAACGQLA 341 Query: 367 SLSKRIPKVPRQEMQIT 383 + K + M+++ Sbjct: 342 GQVQDKTKRTHRLMEVS 358 >gi|219872161|ref|YP_002476536.1| ribosomal RNA large subunit methyltransferase N [Haemophilus parasuis SH0165] gi|219692365|gb|ACL33588.1| predicted Fe-S-cluster redox enzyme [Haemophilus parasuis SH0165] Length = 386 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 156/383 (40%), Positives = 220/383 (57%), Gaps = 23/383 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+++ E ++G R Q+ KWIY G +F M++I++ +R L Sbjct: 18 EKINLLNLNRQQMRELFAEMG----EKPFRADQLMKWIYHFGEDNFDNMTNINKVLREKL 73 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PE+ E+ S DGT KW + +IETVYIP+ R TLCVSSQVGC Sbjct: 74 KRIAEIKAPEVAVEQRSADGTIKWAMWVGD------QQIETVYIPKDDRATLCVSSQVGC 127 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNL+ EI+ QV A ++G+F + R I+N+VM Sbjct: 128 ALACTFCSTAQQGFNRNLSVSEIIGQVWRASKIIGNFGV----------TGIRPITNVVM 177 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D SKRR+TLSTSG VP + ++ E+I V LAISLH Sbjct: 178 MGMGEPLLNMNNVIPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKMREQIDVALAISLH 237 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LRN L+P+N+KY ++MLID+ Y +SNA ++T EYVML +ND A L Sbjct: 238 APNDELRNELIPLNKKYNIKMLIDSVNKYLEVSNANHGKVTIEYVMLSHVNDDVEHAHQL 297 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK P+KINLIP+NP+P Y S I F + + G++ +R RG DI AAC Sbjct: 298 ADVLKNTPSKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVTVRKTRGDDIDAAC 357 Query: 363 GQLKSLS-KRIPKVPRQEMQITG 384 GQL R + + G Sbjct: 358 GQLAGDVIDRTKRTLEKRKFGEG 380 >gi|296158994|ref|ZP_06841822.1| radical SAM enzyme, Cfr family [Burkholderia sp. Ch1-1] gi|295890869|gb|EFG70659.1| radical SAM enzyme, Cfr family [Burkholderia sp. Ch1-1] Length = 383 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 152/384 (39%), Positives = 220/384 (57%), Gaps = 10/384 (2%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +L+ + + L +G R Q+ +WI+ DF GM+D+++ + Sbjct: 1 MTSSPTVNLLDLDAQGLVAYCDSLG----EKPFRAKQLQRWIHQYNAADFDGMTDLAKSL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L +I P IV + IS DGTRKWL+ +G +ETVYIPE++RGTLCVSS Sbjct: 57 REKLKGRATISMPGIVSDHISTDGTRKWLI-----DVGNSNAVETVYIPEETRGTLCVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI- 179 Q GC++ C FC TG Q RNLT EI+ Q+ +A L G + G ++ Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLTTGEIIGQLRMAEFALRASRGVDGGRATGGDGKGERVV 171 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 +N+VMMGMGEPL N+D V ++ + D S+RR+TLSTSG VP + R+G ++ V L Sbjct: 172 TNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLPVAL 231 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA S+ LR++LVP+N+KYPL L+ AC+ Y ++ ITFEY ML G+NDS A Sbjct: 232 AVSLHAPSDPLRDMLVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDSEAQA 291 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L+ + + +P K NLIPFNP+P + S + I F++ + +G + +R RG DI Sbjct: 292 RELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQVLMDAGVVTTVRKTRGDDID 351 Query: 360 AACGQLKSLSKRIPKVPRQEMQIT 383 AACGQL K ++ + + Sbjct: 352 AACGQLAGAVKDRTRLAERTGKAA 375 >gi|332970237|gb|EGK09230.1| cfr family radical SAM enzyme [Psychrobacter sp. 1501(2011)] Length = 403 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 158/386 (40%), Positives = 227/386 (58%), Gaps = 27/386 (6%) Query: 2 NFLK-KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 + + K +++GM +E+L + +IG R +Q+ KWIY G+ DF M+++S+ + Sbjct: 20 DTMPAKTNILGMSQEQLGDYFKQIG----EKPFRATQVMKWIYQHGVTDFAQMTNLSKGL 75 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGT 115 R L++ + PE+V ++ S DGTRKW+ + + G +ETV IP R T Sbjct: 76 REKLSEKACVETPEVVHKEFSEDGTRKWVFK-----VAGGSLVETVLIPADDSKVNGRKT 130 Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175 LC+SSQVGC+L CSFC TG Q R+LTA EI+ Q+ +A + + G+ Sbjct: 131 LCISSQVGCALDCSFCSTGKQGFERDLTAAEIIGQLWVANASYME--------GVDSSEW 182 Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI 235 ++N+VMMGMGEPL N+ V S+S+ SKRR+TLSTSG VP + + ++I Sbjct: 183 QNNVTNVVMMGMGEPLLNYKPVVSSMSLMLSDHAYGLSKRRVTLSTSGVVPKMYDLYKDI 242 Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP---GLSNARRITFEYVMLKGI 292 V LAISLHA +++LRN LVPIN+KYPL LI A + Y + + +T EYVML G+ Sbjct: 243 DVALAISLHAPNDELRNELVPINKKYPLSELIAAAKAYVHDNNPRHKKHVTIEYVMLAGV 302 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 NDS A L+ +L+G+P+KINLIPFNP+P Y S I FS + +G+ IR Sbjct: 303 NDSDEHAHQLVALLEGLPSKINLIPFNPFPHAPYDRSSNNRIHAFSNILNNAGFVCTIRQ 362 Query: 353 PRGLDILAACGQL-KSLSKRIPKVPR 377 RG DI AACGQL ++ R + + Sbjct: 363 TRGDDIDAACGQLVGQVADRTRRSAK 388 >gi|238027069|ref|YP_002911300.1| hypothetical protein bglu_1g14480 [Burkholderia glumae BGR1] gi|237876263|gb|ACR28596.1| Hypothetical protein bglu_1g14480 [Burkholderia glumae BGR1] Length = 378 Score = 450 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 151/378 (39%), Positives = 216/378 (57%), Gaps = 12/378 (3%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +L+ E L +G R Q+ +WI+ DF GM+D+++ + Sbjct: 1 MTSDTPVNLLDFDAEGLVAYCGSLG----EKPFRAKQLQRWIHQYNAADFDGMTDLAKSL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L I PEI + +S DGTRKWL+ +G +ETV+IPE++RGTLCVSS Sbjct: 57 REKLKGRAVIGMPEIASDHVSSDGTRKWLI-----DVGNGNAVETVFIPEETRGTLCVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC++ C FC TG Q RNL+ EI+ Q+ +A L + G R ++ Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTAEIVGQLRMAEFALRESLGRAPGPNG---KAERVVT 168 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+ V ++ + D S+RR+TLSTSG VP + R+G E+ V LA Sbjct: 169 NVVMMGMGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALA 228 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++ LR++LVP+N+KYPL L+ AC+ Y ++ ITFEY ML GIND+ A Sbjct: 229 VSLHAPNDALRDMLVPLNKKYPLRELMAACQRYLAVAPRDFITFEYCMLDGINDTDAHAR 288 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L+ + + +P K NLIPFNP+P L S + I FS+ + +G + +R RG DI A Sbjct: 289 ELLAVTRDVPCKFNLIPFNPFPESGLLRSKNERIKQFSQILIEAGVVTTVRKTRGDDIDA 348 Query: 361 ACGQLKSLSKRIPKVPRQ 378 ACGQL K ++ ++ Sbjct: 349 ACGQLAGAVKDRTRLQQR 366 >gi|301169067|emb|CBW28664.1| predicted enzyme [Haemophilus influenzae 10810] Length = 383 Score = 450 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 158/379 (41%), Positives = 218/379 (57%), Gaps = 24/379 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L Sbjct: 14 KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 69 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC Sbjct: 70 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F + R I+N+VM Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGI----------TGVRPITNVVM 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ +VPIN+KY ++ LID+ Y +SNA ++T EYVML +ND A L Sbjct: 234 APNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++L P KINLIP+NP+P Y S I F + + G++ IR RG DI AAC Sbjct: 294 AEVLNNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAAC 353 Query: 363 GQLKSLSKRIPKVPRQEMQ 381 GQL I + R M+ Sbjct: 354 GQLAGDV--IDRTKRTAMK 370 >gi|293604539|ref|ZP_06686944.1| cfr family radical SAM enzyme [Achromobacter piechaudii ATCC 43553] gi|292817120|gb|EFF76196.1| cfr family radical SAM enzyme [Achromobacter piechaudii ATCC 43553] Length = 384 Score = 450 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 149/380 (39%), Positives = 216/380 (56%), Gaps = 9/380 (2%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +++ +L+G+ L E + + G R Q+ +W++ RG F M+D+++E Sbjct: 1 MESVERINLLGLDGSALSELVGQWG----GKPFRARQLQRWMHQRGADSFDAMTDLAREF 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L + I + E+ S DGTRKWL +G IETV+IPE RGTLC+SS Sbjct: 57 RSQLASNCRIEALPVNIEQRSADGTRKWLF-----DVGQGNAIETVFIPEDDRGTLCISS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC + C FC TG Q RNL EI+ Q+ A+ +L G +E R IS Sbjct: 112 QAGCVVNCRFCSTGHQGFNRNLKTSEIIGQLWWAKRVLEADIGTARLESAKATEDTRVIS 171 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+D V +L + D S+RR+T+STSG VP + R+ ++ V LA Sbjct: 172 NVVMMGMGEPLLNYDQVLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPVALA 231 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++ LR+ LVP+N+KYPL+ L+ AC Y + ITFEY ML GIND+ + A Sbjct: 232 VSLHAPNDALRDELVPLNKKYPLKELLAACERYLAFAPRDFITFEYCMLDGINDTDQHAK 291 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 LI+I + + K+NLIPFNP+P S+ + F++ + +G + +R RG DI A Sbjct: 292 ELIQIARQLRCKLNLIPFNPFPESGLKRSNSARVKVFAQRLMDAGIITTVRKTRGDDIDA 351 Query: 361 ACGQLKSLSKRIPKVPRQEM 380 ACGQL + ++ + Sbjct: 352 ACGQLAGEVRDRTRITERNA 371 >gi|221066031|ref|ZP_03542136.1| radical SAM enzyme, Cfr family [Comamonas testosteroni KF-1] gi|220711054|gb|EED66422.1| radical SAM enzyme, Cfr family [Comamonas testosteroni KF-1] Length = 373 Score = 450 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 155/383 (40%), Positives = 210/383 (54%), Gaps = 25/383 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+ E L ++G R R +Q+++WI+ RG DF M+D+++ +R L Sbjct: 3 TNLLDFDLEGLTAYCEQLG----EKRFRATQLFRWIHQRGASDFDQMTDLAKSLREKLKS 58 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I +V E +S DGT KWL +G +E+V+IPE RGTLCVSSQ GC++ Sbjct: 59 RAHITALPVVTEHVSADGTVKWLF-----DVGDGNAVESVFIPEDDRGTLCVSSQAGCAV 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG Q RNL EIL Q+ A L G ED R ISN+VMMG Sbjct: 114 GCRFCSTGHQGFSRNLDTGEILAQLWYAEHSLRKRFGTED----------RIISNVVMMG 163 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N+ + +L + D G S+RR+T+STSG VP + R+ ++ V LA+SLHA Sbjct: 164 MGEPLQNYSALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLSQDCAVALAVSLHAP 223 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ LR+ LVP+NRKYP+ L+DAC Y + ITFEY ML G+ND P A LI+++ Sbjct: 224 NDPLRDNLVPLNRKYPIAELLDACERYLEFAPRDFITFEYCMLDGVNDQPEHARQLIELV 283 Query: 307 KGIP-----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 + K NLIPFNP+P L S + F+ + +G + +R RG DI AA Sbjct: 284 RARGDGKSWCKFNLIPFNPFPASGLLRSSAARVTEFATMLSNAGIVTTVRKTRGDDIDAA 343 Query: 362 CGQLKSLSK-RIPKVPRQEMQIT 383 CGQL K R R Q T Sbjct: 344 CGQLAGDVKDRTRAAERMAKQRT 366 >gi|330824021|ref|YP_004387324.1| ribosomal RNA large subunit methyltransferase N [Alicycliphilus denitrificans K601] gi|329309393|gb|AEB83808.1| Ribosomal RNA large subunit methyltransferase N [Alicycliphilus denitrificans K601] Length = 374 Score = 450 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 151/382 (39%), Positives = 214/382 (56%), Gaps = 25/382 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+ + + + ++G R R +Q+++WI+ RG DF MSD+++ +R L Sbjct: 3 TNLLDLDLDAMAAFCERLG----EKRFRATQLFRWIHQRGASDFDQMSDLAKSLREKLKG 58 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + + + E S DGT KWL +GG +ETV+IPE RGTLC+SSQ GC++ Sbjct: 59 CAHVSGLQAISEHASADGTVKWLF-----DVGGGNAVETVFIPEDDRGTLCISSQAGCAV 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG Q RNLT EI+ Q+ A +L G R ISN+VMMG Sbjct: 114 GCRFCSTGHQGFSRNLTTGEIVAQLWHAEHVLRQRRG----------DGERVISNVVMMG 163 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N+ + +L I D G S+RR+T+STSG VP + R+G + V LA+SLHA Sbjct: 164 MGEPLQNYSALVPALRIMLDDHGYGLSRRRVTVSTSGVVPMMDRLGRDCPVALAVSLHAP 223 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 +++LR+ LVP+NRKYPL+ L+ ACR Y + ITFEY ML G+ND P A LI ++ Sbjct: 224 NDELRDNLVPLNRKYPLQELLAACRRYLEHAPRDFITFEYCMLDGVNDQPEHARELIALV 283 Query: 307 K------GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 G+ K NLIPFNP+P S + F++ + +G + +R RG DI A Sbjct: 284 SRKAADGGVSCKFNLIPFNPFPASGLRRSPAVAVSAFAKLLSDAGIVTTVRKTRGDDIDA 343 Query: 361 ACGQLKSLSKRIPKVPRQEMQI 382 ACGQL K +V + ++ Sbjct: 344 ACGQLAGDVKDRTRVGERMARL 365 >gi|317403336|gb|EFV83849.1| ribosomal RNA large subunit methyltransferase N [Achromobacter xylosoxidans C54] Length = 384 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 149/380 (39%), Positives = 213/380 (56%), Gaps = 9/380 (2%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +++ +L+G+ L E + + G R Q+ +W++ RG F M+D++++ Sbjct: 1 MESVERINLLGLDGSALSELVGQWG----GKPFRARQLQRWMHQRGADSFDAMTDLARDF 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L I + E+ S DGTRKWL +G IETV+IPE RGTLC+SS Sbjct: 57 RGQLASRCVIEALAVNTEQRSSDGTRKWLF-----DVGQGNAIETVFIPEDDRGTLCISS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC + C FC TG Q RNL EI+ Q+ A+ +L G +E R IS Sbjct: 112 QAGCVVNCRFCSTGHQGFNRNLKTSEIIGQLWWAKRVLEADIGTARLESARATDDTRVIS 171 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+D V +L + D S+RR+T+STSG VP + R+ ++ V LA Sbjct: 172 NVVMMGMGEPLLNYDQVLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPVALA 231 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++ LR+ LVP+N+KYPL+ L+ AC Y + ITFEY ML GIND+ + A Sbjct: 232 VSLHAPNDALRDELVPLNKKYPLKELLAACERYLAFAPRDFITFEYCMLDGINDTDQHAR 291 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 LI I + I K+NLIPFNP+P S + F++ + +G + +R RG DI A Sbjct: 292 ELIHIARQIRCKLNLIPFNPFPASGLKRSPSARVKVFAQRLMDAGIITTVRKTRGDDIDA 351 Query: 361 ACGQLKSLSKRIPKVPRQEM 380 ACGQL + ++ + Sbjct: 352 ACGQLAGEVRDRTRITERNA 371 >gi|187924520|ref|YP_001896162.1| radical SAM enzyme, Cfr family [Burkholderia phytofirmans PsJN] gi|205829686|sp|B2SXT2|RLMN_BURPP RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|187715714|gb|ACD16938.1| radical SAM enzyme, Cfr family [Burkholderia phytofirmans PsJN] Length = 383 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 152/384 (39%), Positives = 220/384 (57%), Gaps = 10/384 (2%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +L+ + + L +G R Q+ +WI+ DF GM+D+++ + Sbjct: 1 MTSSPTVNLLDLDAQGLVAYCDSLG----EKPFRAKQLQRWIHQYNAADFDGMTDLAKSL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L +I P IV + IS DGTRKWL+ +G +ETVYIPE++RGTLCVSS Sbjct: 57 REKLKGRATISMPGIVSDNISTDGTRKWLI-----DVGNSNAVETVYIPEETRGTLCVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI- 179 Q GC++ C FC TG Q RNLT EI+ Q+ +A L G + G ++ Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLTTAEIIGQLRMAEFALRASRGIDGGRATGGDGKGERVV 171 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 +N+VMMGMGEPL N+D V ++ + D S+RR+TLSTSG VP + R+G ++ V L Sbjct: 172 TNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLPVAL 231 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA S+ LR++LVP+N+KYPL L+ AC+ Y ++ ITFEY ML G+NDS A Sbjct: 232 AVSLHAPSDPLRDMLVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDSEAQA 291 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L+ + + +P K NLIPFNP+P + S + I F++ + +G + +R RG DI Sbjct: 292 RELLALTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQVLMDAGVVTTVRKTRGDDID 351 Query: 360 AACGQLKSLSKRIPKVPRQEMQIT 383 AACGQL K ++ + + Sbjct: 352 AACGQLAGAVKDRTRLAERTGKAA 375 >gi|295399765|ref|ZP_06809746.1| radical SAM enzyme, Cfr family [Geobacillus thermoglucosidasius C56-YS93] gi|294978168|gb|EFG53765.1| radical SAM enzyme, Cfr family [Geobacillus thermoglucosidasius C56-YS93] Length = 364 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 125/366 (34%), Positives = 203/366 (55%), Gaps = 25/366 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 S+ + E+L+ +++ G R +QI++W+Y + + F M+++ + +R L+ Sbjct: 19 PSIYSLTFEQLKNWIIEQG----EKPFRATQIYEWLYQKRVTHFSEMTNLPKALREKLSG 74 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 HF I + + ++ S DGT K+L IETV + ++CV++QVGC + Sbjct: 75 HFDITTLKTLVKQTSKDGTMKFLFELHD-----GYSIETVLMRHNYGNSICVTTQVGCRI 129 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC + L R+L A EI+ QV+ + L + +IS+IV+MG Sbjct: 130 GCTFCASTLGGLKRHLEAGEIVAQVVKVQKELDE--------------QNERISSIVVMG 175 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 +GEP N+D + K L I + + GL+ R IT+STSG +P I + +E + V AISLHA Sbjct: 176 IGEPFDNYDELIKFLKIVNHAKGLNIGARHITVSTSGIIPKIYQFADEGMQVNFAISLHA 235 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + +LR L+PIN+ YPL L+DA R+Y + R+TFEY + G+ND A L ++ Sbjct: 236 PTTELRTKLMPINKAYPLPKLMDAVRYYIEKTGR-RVTFEYGLFGGVNDQLEHAEQLAEL 294 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +KG+ +NLIP N P Y+ + ++ I F +K+ G + IR +G DI AACGQL Sbjct: 295 IKGLKCHVNLIPVNYVPERNYVRTPREQIFAFERALKKHGINVTIRREQGHDIDAACGQL 354 Query: 366 KSLSKR 371 ++ ++ Sbjct: 355 RAKERK 360 >gi|319779677|ref|YP_004130590.1| Ribosomal RNA large subunit methyltransferase N [Taylorella equigenitalis MCE9] gi|317109701|gb|ADU92447.1| Ribosomal RNA large subunit methyltransferase N [Taylorella equigenitalis MCE9] Length = 378 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 151/381 (39%), Positives = 217/381 (56%), Gaps = 14/381 (3%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M L+K++LIG+ L E + K G H R Q+ WI+ +G +F M++++ + Sbjct: 1 MTILEKQNLIGLDYTVLTELVAKWG----HKPFRAKQLMNWIHQKGESNFSNMTNLANDF 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L + I P+ + +++S DGT KWL + IETV+IPE RGTLC+SS Sbjct: 57 RKNLAEFAEISVPKELTKQVSTDGTTKWLF-----DVQNNNAIETVFIPEDDRGTLCISS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC++ C FC TG Q RNLT EI+ QV LAR + + R IS Sbjct: 112 QAGCTVACRFCSTGHQGFNRNLTTSEIIGQVWLARKEI-----LNSSTDIQKLPGDRVIS 166 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+V MGMGEPL N+D V ++ + D S+RR+T+STSG +P + ++ ++ V LA Sbjct: 167 NVVFMGMGEPLLNYDQVLPAVKMLVDQNAYGLSRRRVTVSTSGVIPFMDKLSQDCPVALA 226 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++ LRN L+P+N+KYPL+ LIDAC Y + ITFEY+ML+ +ND+ A Sbjct: 227 VSLHAPNDALRNQLIPLNKKYPLKELIDACNRYIEFAPRDFITFEYIMLEDVNDTDIHAN 286 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 LI+I + + +K+NLIPFNP+P S + + FS + +G + R RG DI A Sbjct: 287 QLIEICREVKSKVNLIPFNPFPESGLKRSSSQRVKAFSAILNDAGIVATTRKTRGDDIDA 346 Query: 361 ACGQLKSLSKRIPKVPRQEMQ 381 ACGQL K K+ Q Sbjct: 347 ACGQLAGDIKDKSKISELMKQ 367 >gi|322515331|ref|ZP_08068328.1| cfr family radical SAM enzyme [Actinobacillus ureae ATCC 25976] gi|322118707|gb|EFX90919.1| cfr family radical SAM enzyme [Actinobacillus ureae ATCC 25976] Length = 393 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 154/377 (40%), Positives = 216/377 (57%), Gaps = 22/377 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+E+ E ++ R Q+ KWIY G +F MS+I++ +R L Sbjct: 25 EKINLMNLTRQEMRELFAEM----DEKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKL 80 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q I PE+ E+ S DGT KW ++ +IETVYIPE R TLCVSSQVGC Sbjct: 81 KQIAEIKAPEVSVEQRSSDGTIKWAMQVGD------QQIETVYIPEADRATLCVSSQVGC 134 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNLT EI+ QV A ++G+F + R I+N+VM Sbjct: 135 ALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 184 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D SKRR+TLST+G VP + E+I V LAISLH Sbjct: 185 MGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPAFDIMREKIDVALAISLH 244 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ ++PIN+KY ++ML+D+ Y +SNA ++T EYV+L +ND A L Sbjct: 245 APNDELRDEIMPINKKYNIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQL 304 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+P Y S + F + + G++ +R RG DI AAC Sbjct: 305 AEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAAC 364 Query: 363 GQLKSLSKRIPKVPRQE 379 GQL K ++ Sbjct: 365 GQLAGDVIDRTKRTMEK 381 >gi|145638726|ref|ZP_01794335.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae PittII] gi|145272321|gb|EDK12229.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae PittII] Length = 383 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 158/379 (41%), Positives = 218/379 (57%), Gaps = 24/379 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L Sbjct: 14 KKINLMDLTRQQMREFFKQLG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 69 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC Sbjct: 70 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F + R I+N+VM Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ +VPIN+KY ++ LID+ Y +SNA ++T EYVML +ND A L Sbjct: 234 APNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++L P KINLIP+NP+P Y S I F + + G++ IR RG DI AAC Sbjct: 294 AEVLNNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAAC 353 Query: 363 GQLKSLSKRIPKVPRQEMQ 381 GQL I + R M+ Sbjct: 354 GQLAGDV--IDRTKRTAMK 370 >gi|90021078|ref|YP_526905.1| Crp/FNR family transcriptional regulator [Saccharophagus degradans 2-40] gi|123090598|sp|Q21KT6|RLMN_SACD2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|89950678|gb|ABD80693.1| transcriptional regulator, Crp/Fnr family [Saccharophagus degradans 2-40] Length = 398 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 167/375 (44%), Positives = 226/375 (60%), Gaps = 22/375 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ + +LE +G R R +Q+ KWI+ G+ DF+ M++IS+ +R L+ Sbjct: 11 KVNLMGLSQAKLEAFFDSLG----EKRFRATQVLKWIHQMGVTDFEQMTNISKPLRDKLS 66 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 Q + PE+V++ S DGTRK+L+R +GG +ETVYIP+ RGTLCVSSQVGCS Sbjct: 67 QVAEAVAPEVVNQWDSSDGTRKFLIR-----VGGGNAVETVYIPDGDRGTLCVSSQVGCS 121 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q R+LTA EI+ QV A F RKI+N+VMM Sbjct: 122 LDCSFCATGKQGFNRDLTAAEIIGQVWQAAKSFNQFGV----------GAQRKITNVVMM 171 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV S+++ SKRR+TLSTSG VP + ++GE LAISLHA Sbjct: 172 GMGEPLLNFDNVVDSMNLMMHDNCYGLSKRRVTLSTSGVVPALDKLGEYTDACLAISLHA 231 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNLI 303 +N LRN LVPIN+KYP+EML+ + + Y R +T EY ++ +ND P A L Sbjct: 232 PNNALRNELVPINKKYPIEMLLASAKRYIDGLPDVRRKMTIEYTLIDQVNDRPEHAHELA 291 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK IP KINLIPFNP+ Y + F + + +GY++ +RT RG DI AACG Sbjct: 292 ELLKDIPVKINLIPFNPFNLSNYKRVSNNALRRFQQILIDAGYTTTVRTTRGDDIDAACG 351 Query: 364 QLKS-LSKRIPKVPR 377 QL ++ R + R Sbjct: 352 QLAGQVNDRTKRSQR 366 >gi|163856328|ref|YP_001630626.1| hypothetical protein Bpet2017 [Bordetella petrii DSM 12804] gi|205829671|sp|A9IK57|RLMN_BORPD RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|163260056|emb|CAP42357.1| conserved hypothetical protein [Bordetella petrii] Length = 381 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 149/383 (38%), Positives = 216/383 (56%), Gaps = 10/383 (2%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M ++ +L+G+ L + + + G R Q+ +WI+ RG F M+D++++ Sbjct: 1 METAERVNLLGLDGAALSDLVGQWG----GKPFRARQLQRWIHQRGADSFDAMTDLARDF 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L Q I + E+ S DGTRKWL +G IETV+IPE RGTLCVSS Sbjct: 57 RGQLAQQCRIQALPVNTEQRSSDGTRKWLF-----DVGQGNAIETVFIPEDDRGTLCVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC++ C FC TG Q RNLT+ EI+ Q+ A+ +L + G R +S Sbjct: 112 QAGCAVNCRFCSTGHQGFNRNLTSSEIIGQLWWAKRVL-EADAGTARLGGAGNDDTRVVS 170 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+D + +L + D S+RR+T+STSG VP + R+ + V LA Sbjct: 171 NVVMMGMGEPLLNYDQLLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSRDCPVALA 230 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++ LR+ LVP+N+KYPL L+ AC Y + ITFEY ML GIND+ + A Sbjct: 231 VSLHAPTDALRDELVPLNKKYPLAELLAACERYLASAPRDFITFEYCMLDGINDTDQHAR 290 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 LI++ + + K+NLIPFNP+P S + F++ + +G + +R RG DI A Sbjct: 291 ALIQVARQVRCKLNLIPFNPFPASGLKRSPSARVKVFAQRLMDAGIVTTVRKTRGDDIDA 350 Query: 361 ACGQLKSLSKRIPKVPRQEMQIT 383 ACGQL + +V ++ T Sbjct: 351 ACGQLAGEVRDRTRVAQRNAGRT 373 >gi|307729247|ref|YP_003906471.1| radical SAM enzyme, Cfr family [Burkholderia sp. CCGE1003] gi|307583782|gb|ADN57180.1| radical SAM enzyme, Cfr family [Burkholderia sp. CCGE1003] Length = 383 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 151/384 (39%), Positives = 219/384 (57%), Gaps = 10/384 (2%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +L+ + + L +G R Q+ +WI+ DF GM+D+++ + Sbjct: 1 MTSSSTVNLLDLDAQGLVAYCDSLG----EKPFRAKQLQRWIHQYNAADFDGMTDLAKSL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L +I P IV + IS DGTRKWL+ +G +ETV+IPE++RGTLCVSS Sbjct: 57 REKLKGRATISMPGIVSDHISADGTRKWLI-----DVGNSNAVETVFIPEETRGTLCVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI- 179 Q GC++ C FC TG Q RNLT EI+ Q+ +A L G G ++ Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLTTGEIIGQLRMAEFALRASLGAAGGRATGGEGKGERVV 171 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 +N+VMMGMGEPL N+D V ++ + D S+RR+TLSTSG VP + R+G ++ V L Sbjct: 172 TNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLPVAL 231 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA S+ LR++LVP+N+KYPL L+ AC+ Y ++ ITFEY ML G+NDS A Sbjct: 232 AVSLHAPSDPLRDMLVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDSEAQA 291 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L+ + + +P K NLIPFNP+P + S + I F++ + +G + +R RG DI Sbjct: 292 RELLALTRDVPCKFNLIPFNPFPESGLVRSRPEQIKRFAQVLVDAGVVTTVRKTRGDDID 351 Query: 360 AACGQLKSLSKRIPKVPRQEMQIT 383 AACGQL K ++ + + Sbjct: 352 AACGQLAGAVKDRTRLAERSGKAA 375 >gi|145636367|ref|ZP_01792036.1| hypothetical protein CGSHiHH_07816 [Haemophilus influenzae PittHH] gi|148825353|ref|YP_001290106.1| ribosomal RNA large subunit methyltransferase N [Haemophilus influenzae PittEE] gi|145270532|gb|EDK10466.1| hypothetical protein CGSHiHH_07816 [Haemophilus influenzae PittHH] gi|148715513|gb|ABQ97723.1| hypothetical protein CGSHiEE_01185 [Haemophilus influenzae PittEE] Length = 383 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 158/379 (41%), Positives = 217/379 (57%), Gaps = 24/379 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L Sbjct: 14 KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 69 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC Sbjct: 70 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F + R I+N+VM Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ +VPIN+KY ++ LID+ Y +SNA ++T EYVML +ND A L Sbjct: 234 APNDELRDEIVPINKKYNIKTLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK P KINLIP+NP+P Y S I F + + ++ IR RG DI AAC Sbjct: 294 ADVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAAC 353 Query: 363 GQLKSLSKRIPKVPRQEMQ 381 GQL I + R M+ Sbjct: 354 GQLAGDV--IDRTKRTAMK 370 >gi|330817169|ref|YP_004360874.1| hypothetical protein bgla_1g22910 [Burkholderia gladioli BSR3] gi|327369562|gb|AEA60918.1| hypothetical protein bgla_1g22910 [Burkholderia gladioli BSR3] Length = 378 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 150/378 (39%), Positives = 214/378 (56%), Gaps = 12/378 (3%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +L+ E L +G R Q+ +WI+ DF GM+D+++ + Sbjct: 1 MTSETSVNLLDFDAEGLVAYCGSLG----EKPFRAKQLQRWIHQYNAADFDGMTDLAKSL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L I PEI + +S DGTRKWL+ +G +ETV+IPE++RGTLCVSS Sbjct: 57 REKLKGRAMIGMPEIASDHVSSDGTRKWLI-----DVGNGNAVETVFIPEETRGTLCVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC++ C FC TG Q RNL+ EI+ Q+ +A L + G R ++ Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTAEIVGQLRMAEFALRESLGRAPGPNG---KADRVVT 168 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+ V ++ + D S+RR+TLSTSG VP + R+G E+ V LA Sbjct: 169 NVVMMGMGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALA 228 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++ LR+ LVP+N+KYPL L+ AC+ Y ++ ITFEY ML G+ND+ A Sbjct: 229 VSLHAPNDALRDELVPLNKKYPLRELMAACQRYLTVAPRDFITFEYCMLDGVNDTDAHAR 288 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L+ + + +P K NLIPFNP+P L S + I FS+ + +G + +R RG DI A Sbjct: 289 ELLAVTRDVPCKFNLIPFNPFPESGLLRSKNERIKQFSQILIDAGVVTTVRKTRGDDIDA 348 Query: 361 ACGQLKSLSKRIPKVPRQ 378 ACGQL K ++ + Sbjct: 349 ACGQLAGAVKDRTRLAER 366 >gi|145640315|ref|ZP_01795899.1| hypothetical protein CGSHiR3021_09660 [Haemophilus influenzae R3021] gi|145274901|gb|EDK14763.1| hypothetical protein CGSHiR3021_09660 [Haemophilus influenzae 22.4-21] Length = 383 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 159/379 (41%), Positives = 219/379 (57%), Gaps = 24/379 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L Sbjct: 14 KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 69 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC Sbjct: 70 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F + R I+N+VM Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ +VPIN+KY ++MLID+ Y +SNA ++T EYVML +ND A L Sbjct: 234 APNDELRDEIVPINKKYNIQMLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+P Y S I F + + ++ IR RG DI AAC Sbjct: 294 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAAC 353 Query: 363 GQLKSLSKRIPKVPRQEMQ 381 GQL I + R M+ Sbjct: 354 GQLAGDV--IDRTKRTAMK 370 >gi|323526580|ref|YP_004228733.1| radical SAM enzyme, Cfr family [Burkholderia sp. CCGE1001] gi|323383582|gb|ADX55673.1| radical SAM enzyme, Cfr family [Burkholderia sp. CCGE1001] Length = 383 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 150/384 (39%), Positives = 220/384 (57%), Gaps = 10/384 (2%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +L+ + + L +G R Q+ +WI+ DF GM+D+++ + Sbjct: 1 MTSSSTVNLLDLDAQGLVAYCESLG----EKPFRAKQLQRWIHQYNAADFDGMTDLAKSL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L ++ P IV + +S DGTRKWL+ +G +ETV+IPE++RGTLCVSS Sbjct: 57 REKLKGRATLTMPGIVSDHVSADGTRKWLI-----DVGNSNAVETVFIPEETRGTLCVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI- 179 Q GC++ C FC TG Q RNLT EI+ Q+ +A L G G ++ Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLTTGEIIGQLRMAEFALRASLGAAGGRATGGEGKGERVV 171 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 +N+VMMGMGEPL N+D V ++ + D S+RR+TLSTSG VP + R+G ++ V L Sbjct: 172 TNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLPVAL 231 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA S+ LR++LVP+N+KYPL L+ AC+ Y ++ ITFEY ML G+NDS A Sbjct: 232 AVSLHAPSDPLRDMLVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDSEAQA 291 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L+ + + +P K NLIPFNP+P + S Q+ I F++ + +G + +R RG DI Sbjct: 292 RELLALTRDVPCKFNLIPFNPFPESGLVRSKQEQIKRFAQVLMDAGVVTTVRKTRGDDID 351 Query: 360 AACGQLKSLSKRIPKVPRQEMQIT 383 AACGQL K ++ + + Sbjct: 352 AACGQLAGAVKDRTRLAERTGKAA 375 >gi|254252255|ref|ZP_04945573.1| hypothetical protein BDAG_01475 [Burkholderia dolosa AUO158] gi|124894864|gb|EAY68744.1| hypothetical protein BDAG_01475 [Burkholderia dolosa AUO158] Length = 379 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 148/378 (39%), Positives = 215/378 (56%), Gaps = 12/378 (3%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +L+ E L +G R Q+ +WI+ DF GM+D+++ + Sbjct: 1 MTSETSVNLLDFDAEGLVAYCGSLG----EKPFRAKQLQRWIHQYNASDFDGMTDLAKSL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L SI P+IV + +S DGTRKWL+ +G +ETV+IPE +RGTLCVSS Sbjct: 57 REKLKGRASIAMPDIVSDHVSADGTRKWLI-----DVGNGNAVETVFIPEGTRGTLCVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC++ C FC TG Q RNL+ EI+ Q+ +A L G R ++ Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTGEIIGQLRMAEFALRASLGRAPGPNG---KAERVVT 168 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N++ V ++ + D S+RR+TLSTSG VP + R+G E+ V LA Sbjct: 169 NVVMMGMGEPLLNYNAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALA 228 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++ LR+ LVP+N+K+PL L+ AC+ Y ++ ITFEY ML G+ND+ A Sbjct: 229 VSLHAPNDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHAR 288 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L+ + + +P K NLIPFNP+P + S + I F++ + +G + +R RG DI A Sbjct: 289 ELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQILIDAGIVTTVRKTRGDDIDA 348 Query: 361 ACGQLKSLSKRIPKVPRQ 378 ACGQL K ++ + Sbjct: 349 ACGQLAGAVKDRTRLAER 366 >gi|261868678|ref|YP_003256600.1| ribosomal RNA large subunit methyltransferase N [Aggregatibacter actinomycetemcomitans D11S-1] gi|261414010|gb|ACX83381.1| hypothetical protein D11S_2027 [Aggregatibacter actinomycetemcomitans D11S-1] Length = 379 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 154/378 (40%), Positives = 214/378 (56%), Gaps = 23/378 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R ++ E ++G R Q+ KWIY G +F M+++++ +R L Sbjct: 11 KKVNLMNLTRAQMREFFAELG----EKPFRADQLVKWIYHFGEDNFDNMTNLNKALREKL 66 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+ E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC Sbjct: 67 KTMAEIKAPEVAVEQRSADGTIKWAMQVGD------QQVETVYIPEADRTTLCVSSQVGC 120 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F + R I+N+VM Sbjct: 121 ALACTFCSTAQQGFNRNLTVAEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 170 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH Sbjct: 171 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 230 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ +VP+N+KY ++ LID+ Y +SNA ++T EYVML IND A L Sbjct: 231 APNDELRDEIVPLNKKYNIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHINDHVEHAHQL 290 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK P KINLIP+NP+P Y S I F + + G + +R RG DI AAC Sbjct: 291 AAVLKNTPCKINLIPWNPFPQAPYAKSSNTRIDRFQKTLMEYGLTVIVRKTRGDDIDAAC 350 Query: 363 GQLKSLS-KRIPKVPRQE 379 GQL R + +++ Sbjct: 351 GQLAGDVIDRTKRTAQKK 368 >gi|170718501|ref|YP_001783713.1| ribosomal RNA large subunit methyltransferase N [Haemophilus somnus 2336] gi|205829771|sp|B0UWR0|RLMN_HAES2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829859|sp|Q0I3U8|RLMN_HAES1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|168826630|gb|ACA32001.1| radical SAM enzyme, Cfr family [Haemophilus somnus 2336] Length = 372 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 156/378 (41%), Positives = 218/378 (57%), Gaps = 23/378 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K +L+ + R+++ ++G R Q+ KWIY G +F M++I++++R L Sbjct: 3 DKINLMNLTRQQMRAFFQELG----EKPFRADQLVKWIYHFGEDNFDHMTNINKKLREKL 58 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PEI E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC Sbjct: 59 KTVAEIKAPEIAVEQRSADGTIKWAMQVGD------QQVETVYIPETDRATLCVSSQVGC 112 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F + R I+N+VM Sbjct: 113 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 162 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+TLSTSG VP + ++ E I V LAISLH Sbjct: 163 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKLSEMIDVALAISLH 222 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LRN +VPIN+KY ++ML+++ Y +SNA ++T EYVML IND A L Sbjct: 223 APNDELRNEIVPINKKYNIKMLMESVNRYLNVSNANHGKVTIEYVMLDHINDGTEHAHQL 282 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+P Y S I F + + G++ +R RG DI AAC Sbjct: 283 AEVLKNTPCKINLIPWNPFPDAPYAKSSNTRIDRFQKTLMEYGFTVILRKTRGDDIDAAC 342 Query: 363 GQLKSLS-KRIPKVPRQE 379 GQL R + +++ Sbjct: 343 GQLAGDVIDRTKRTAQKK 360 >gi|82703494|ref|YP_413060.1| hypothetical protein Nmul_A2379 [Nitrosospira multiformis ATCC 25196] gi|123768149|sp|Q2Y6F3|RLMN_NITMU RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|82411559|gb|ABB75668.1| 23S rRNA m(2)A-2503 methyltransferase [Nitrosospira multiformis ATCC 25196] Length = 365 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 160/379 (42%), Positives = 217/379 (57%), Gaps = 17/379 (4%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+ + L +IG R Q+ +WI+ G DF MSD+++ +R L Sbjct: 3 INLLDFDAKGLTGFCAEIG----EKPFRARQLLRWIHRTGEADFDAMSDLAKGLREKLAA 58 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I P+++ + + DGTRKWLL +G IETVYIPE SRGTLC+SSQVGC+L Sbjct: 59 AAVIEPPKVISDHTASDGTRKWLL-----SVGAGNGIETVYIPETSRGTLCISSQVGCAL 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC TG Q RNLT EI+ Q+ A L + E R I+NIVMMG Sbjct: 114 ACAFCSTGRQGFNRNLTVAEIIGQLWWANKALTETFTSEA-------GRERPITNIVMMG 166 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL NF+NV SL + D S+RR+T+STSG +P + R+ E V LA+SLHA Sbjct: 167 MGEPLTNFENVVTSLDLMLDDNAYGLSRRRVTVSTSGIIPAMDRLRERCPVALAVSLHAP 226 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ LR+ LVPINRKYP+ L+ AC Y + ITFEYVML G+NDS A L++++ Sbjct: 227 NDALRDQLVPINRKYPIRELLGACERYLQSAPRDFITFEYVMLDGVNDSVAQARELVQLV 286 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + IP K+NLIPFNP+P + S + F + + +G + +R RG DI AACGQL Sbjct: 287 RDIPCKLNLIPFNPFPDSGFRRSSANAVSRFRDVLMEAGLVTTVRKTRGDDIAAACGQLA 346 Query: 367 SLS-KRIPKVPRQEMQITG 384 + +VPR + G Sbjct: 347 GKVLDKTRRVPRNIAEAAG 365 >gi|332530539|ref|ZP_08406478.1| radical sam enzyme, cfr family protein [Hylemonella gracilis ATCC 19624] gi|332040014|gb|EGI76401.1| radical sam enzyme, cfr family protein [Hylemonella gracilis ATCC 19624] Length = 404 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 144/383 (37%), Positives = 205/383 (53%), Gaps = 24/383 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + +L+ + L ++G R R +Q+++WI+ RG DF MSD+++ +R Sbjct: 1 MTTANLLDFDLDGLVVFCERLG----EKRFRATQLFRWIHQRGASDFDQMSDLAKSLRAK 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L I ++ ++ S DGT KWL +G +E VYIPE RGTLCVSSQ G Sbjct: 57 LKTAAHIQGLPVITQQESADGTIKWLF-----DVGDGNAVEAVYIPEDDRGTLCVSSQAG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C FC TG Q RNL+ EI+ Q+ A F + R I+N+V Sbjct: 112 CAVGCRFCSTGHQGFSRNLSTGEIVAQLWHAE----HFLRARRQHPLQPGEDHRVITNVV 167 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N+ + +L + D G S+RR+T+STSG VP + R+ E+ V LA+SL Sbjct: 168 MMGMGEPLQNYAALVPALRVMLDDHGYGLSRRRLTVSTSGVVPMMERLSEDCPVALAVSL 227 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL- 302 HA ++ LR+ LVP+NRKYP+ L+D C Y + ITFEY ML G+ND P A L Sbjct: 228 HAPNDGLRDGLVPLNRKYPIHELLDTCLSYLAHAPRDFITFEYCMLDGVNDQPEHARELL 287 Query: 303 ----------IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 + G+ K+NLIPFNP+P S + + F++ + +G + +R Sbjct: 288 ALMQVFRQRAADLGHGVGCKLNLIPFNPFPESGLKRSPGERVQAFAKILLEAGIVTTVRK 347 Query: 353 PRGLDILAACGQLKSLSKRIPKV 375 RG DI AACGQL + V Sbjct: 348 TRGDDIDAACGQLAGDVQDRTSV 370 >gi|325526956|gb|EGD04412.1| radical SAM superfamily protein [Burkholderia sp. TJI49] Length = 379 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 148/378 (39%), Positives = 214/378 (56%), Gaps = 12/378 (3%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +L+ E L +G R Q+ +WI+ DF GM+D+++ + Sbjct: 1 MTSETSVNLLDFDAEGLVAYCGSLG----EKPFRAKQLQRWIHQYNAGDFDGMTDLAKSL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L +I PEI + +S DGTRKWL+ +G +ETV+IPE++RGTLCVSS Sbjct: 57 REKLKGRATISMPEIASDHVSADGTRKWLI-----DVGNGNAVETVFIPEETRGTLCVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC++ C FC TG Q RNL+ EI+ Q+ +A L G R ++ Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNG---KAERVVT 168 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+ V ++ + D S+RR+TLSTSG VP + R+G E+ V LA Sbjct: 169 NVVMMGMGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALA 228 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++ LR+ LVP+N+KYPL L+ AC+ Y ++ ITFEY ML G+ND+ A Sbjct: 229 VSLHAPNDALRDELVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHAR 288 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L+ + + +P K NLIPFNP+P + S + I F++ + +G + +R RG DI A Sbjct: 289 ELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQILIDAGVVTTVRKTRGDDIDA 348 Query: 361 ACGQLKSLSKRIPKVPRQ 378 ACGQL K ++ + Sbjct: 349 ACGQLAGAVKDRTRLAER 366 >gi|309750216|gb|ADO80200.1| 23S rRNA m(2)A2503 methyltransferase, SAM-dependent [Haemophilus influenzae R2866] Length = 390 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 158/379 (41%), Positives = 218/379 (57%), Gaps = 24/379 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L Sbjct: 21 KKINLMDLTRQQMREFFKQLG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 76 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC Sbjct: 77 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 130 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F + R I+N+VM Sbjct: 131 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH Sbjct: 181 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 240 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ +VPIN+KY ++ LID+ Y +SNA ++T EYVML +ND A L Sbjct: 241 APNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGVEHAHQL 300 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++L P KINLIP+NP+P Y S I F + + G++ IR RG DI AAC Sbjct: 301 AEVLNNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAAC 360 Query: 363 GQLKSLSKRIPKVPRQEMQ 381 GQL I + R M+ Sbjct: 361 GQLAGDV--IDRTKRTAMK 377 >gi|145631818|ref|ZP_01787577.1| hypothetical protein CGSHi22421_06593 [Haemophilus influenzae R3021] gi|144982537|gb|EDJ90091.1| hypothetical protein CGSHi22421_06593 [Haemophilus influenzae R3021] Length = 383 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 160/379 (42%), Positives = 219/379 (57%), Gaps = 24/379 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L Sbjct: 14 KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 69 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC Sbjct: 70 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F + R I+N+VM Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ +VPINRKY ++MLID+ Y +SNA ++T EYVML +ND A L Sbjct: 234 APNDELRDEIVPINRKYNIQMLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+P Y S I F + + ++ IR RG DI AAC Sbjct: 294 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAAC 353 Query: 363 GQLKSLSKRIPKVPRQEMQ 381 GQL I + R M+ Sbjct: 354 GQLAGDV--IDRTKRTAMK 370 >gi|205829858|sp|A5UAC2|RLMN_HAEIE RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|309972476|gb|ADO95677.1| 23S rRNA m(2)A2503 methyltransferase, SAM-dependent [Haemophilus influenzae R2846] Length = 390 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 158/379 (41%), Positives = 217/379 (57%), Gaps = 24/379 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L Sbjct: 21 KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 76 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC Sbjct: 77 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 130 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F + R I+N+VM Sbjct: 131 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH Sbjct: 181 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 240 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ +VPIN+KY ++ LID+ Y +SNA ++T EYVML +ND A L Sbjct: 241 APNDELRDEIVPINKKYNIKTLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQL 300 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK P KINLIP+NP+P Y S I F + + ++ IR RG DI AAC Sbjct: 301 ADVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAAC 360 Query: 363 GQLKSLSKRIPKVPRQEMQ 381 GQL I + R M+ Sbjct: 361 GQLAGDV--IDRTKRTAMK 377 >gi|238897947|ref|YP_002923627.1| radical SAM domain protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465705|gb|ACQ67479.1| radical SAM domain protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 393 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 166/380 (43%), Positives = 223/380 (58%), Gaps = 23/380 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ R++L + +KIG R QI KWIY DF M+DI++++R L Sbjct: 33 KKINLLDFNRQKLRDFFVKIG----EKPFRADQIMKWIYHYCYDDFSLMTDINKQLRDKL 88 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PE+ E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC Sbjct: 89 QKIAEIRAPEVAKEQSSSDGTIKWAIKVGD------QQVETVYIPESDRATLCVSSQVGC 142 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNL+ EI+ QV A ++G + R I+N+VM Sbjct: 143 ALECRFCSTAQQGFNRNLSVSEIIGQVWRAAKIIG----------SLKSKGQRPITNVVM 192 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV +++I D G SKRR+TLSTSG VP + ++G+ I V LAISLH Sbjct: 193 MGMGEPLLNINNVVPAMAIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 252 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A ++D+RN LVPINRKY +E L+ A R Y SNA R+T EYVML +NDS + A L Sbjct: 253 APTDDIRNELVPINRKYNIETLLAAVRRYLTKSNANQGRVTIEYVMLNHVNDSLKQAHQL 312 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 LK P KINLIP+NP+PG +Y S I F++ + + +++ IR RG DI AAC Sbjct: 313 ADCLKNTPCKINLIPWNPFPGADYGRSSNSRIDRFAKVLMQYDFTTIIRKTRGNDIDAAC 372 Query: 363 GQLKSLS-KRIPKVPRQEMQ 381 GQL R + ++ + Sbjct: 373 GQLAGDVIDRTKRTLKKNNR 392 >gi|320539274|ref|ZP_08038944.1| putative 23S rRNA m(2)A2503 methyltransferase, SAM-dependen [Serratia symbiotica str. Tucson] gi|320030666|gb|EFW12675.1| putative 23S rRNA m(2)A2503 methyltransferase, SAM-dependen [Serratia symbiotica str. Tucson] Length = 399 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 158/378 (41%), Positives = 219/378 (57%), Gaps = 26/378 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E ++G R Q+ KW+Y DF+ M++I++ +R+ L Sbjct: 32 KINLLDLNRQQMREFFSQMG----EKPFRADQVMKWMYHYCCDDFEQMTEINKVLRNKLQ 87 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+ +E+ S DGT KW ++ ++ETVYIP+ R TLCVSSQVGC+ Sbjct: 88 RVAEIRAPEVAEEQCSADGTIKWAIKVGD------QQVETVYIPDGDRATLCVSSQVGCA 141 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + + R I+N+VMM Sbjct: 142 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------ALKIAGERPITNVVMM 191 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 192 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 251 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++ +RN +VPINR Y +E + A R Y SNA R+T EYVML INDS DA L Sbjct: 252 PNDKIRNEIVPINRNYNIESFLAAVRRYLAKSNANQGRVTVEYVMLDHINDSTDDAHQLA 311 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LK P KINLIP+NP+P Y S + F++ + G+++ +R RG DI AACG Sbjct: 312 NVLKNTPCKINLIPWNPFPAAPYGRSSNSRVDRFAKVLMEYGFTTIVRRTRGDDIDAACG 371 Query: 364 QLKS----LSKRIPKVPR 377 QL +KR K R Sbjct: 372 QLAGEVIDRTKRTLKKKR 389 >gi|260582543|ref|ZP_05850333.1| ribosomal RNA large subunit methyltransferase N [Haemophilus influenzae NT127] gi|260094354|gb|EEW78252.1| ribosomal RNA large subunit methyltransferase N [Haemophilus influenzae NT127] Length = 390 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 158/379 (41%), Positives = 217/379 (57%), Gaps = 24/379 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L Sbjct: 21 KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 76 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC Sbjct: 77 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 130 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F + R I+N+VM Sbjct: 131 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH Sbjct: 181 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 240 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ +VPIN+KY ++ LID+ Y +SNA ++T EYVML +ND A L Sbjct: 241 APNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGVEHAHQL 300 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK P KINLIP+NP+P Y S I F + + ++ IR RG DI AAC Sbjct: 301 ADVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAAC 360 Query: 363 GQLKSLSKRIPKVPRQEMQ 381 GQL I + R M+ Sbjct: 361 GQLAGDV--IDRTKRTAMK 377 >gi|312111725|ref|YP_003990041.1| radical SAM protein [Geobacillus sp. Y4.1MC1] gi|311216826|gb|ADP75430.1| radical SAM enzyme, Cfr family [Geobacillus sp. Y4.1MC1] Length = 364 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 125/366 (34%), Positives = 203/366 (55%), Gaps = 25/366 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 S+ + E+L+ +++ G R +QI++W+Y + + F M+++ + +R L+ Sbjct: 19 PSIYSLTFEQLKNWIIEQG----EKPFRATQIYEWLYQKRVTHFSEMTNLPKTLREKLSG 74 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 HF I + + ++ S DGT K+L IETV + ++CV++QVGC + Sbjct: 75 HFDITTLKTLVKQTSKDGTMKFLFELHD-----GYSIETVLMRHNYGNSICVTTQVGCRI 129 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC + L R+L A EI+ QV+ + L + +IS+IV+MG Sbjct: 130 GCTFCASTLGGLKRHLEAGEIVAQVVKVQKELDE--------------QNERISSIVVMG 175 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 +GEP N+D + K L I + + GL+ R IT+STSG +P I + +E + V AISLHA Sbjct: 176 IGEPFDNYDELIKFLKIVNHAKGLNIGARHITVSTSGIIPKIYQFADEGMQVNFAISLHA 235 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + +LR L+PIN+ YPL L+DA R+Y + R+TFEY + G+ND A L ++ Sbjct: 236 PTTELRTKLMPINKAYPLPKLMDAVRYYIEKTGR-RVTFEYGLFGGVNDQLEHAEQLAEL 294 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +KG+ +NLIP N P Y+ + ++ I F +K+ G + IR +G DI AACGQL Sbjct: 295 IKGLKCHVNLIPVNYVPERNYVRTPREQIFAFERALKKHGINVTIRREQGHDIDAACGQL 354 Query: 366 KSLSKR 371 ++ ++ Sbjct: 355 RAKERK 360 >gi|109899434|ref|YP_662689.1| hypothetical protein Patl_3129 [Pseudoalteromonas atlantica T6c] gi|109701715|gb|ABG41635.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudoalteromonas atlantica T6c] Length = 380 Score = 448 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 158/379 (41%), Positives = 217/379 (57%), Gaps = 22/379 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ R L E IG R Q+ KWIY G+ DF M+++++ +R L Sbjct: 11 KINLLNFNRAGLREYFSSIG----EKPFRADQMMKWIYQAGVSDFDQMTNLNKALREKLK 66 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + PEI ++ + DGT K+ LR G E+ETV+IP++ R TLCVSSQVGC+ Sbjct: 67 AQCEVKAPEIAYQQGASDGTIKFALRLE-----GGQEVETVWIPDEDRATLCVSSQVGCA 121 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC T Q RNL+ EI+ QV + +G + S R I+N+VMM Sbjct: 122 LECTFCSTAQQGFNRNLSVSEIIGQVWRVATTIG----------LSNDSAKRPITNVVMM 171 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N NV ++ + D + SKRR+TLSTSG VP + +G++I V LAISLHA Sbjct: 172 GMGEPLLNLKNVVPAMDLMLDDLAFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISLHA 231 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 + LR+ +VPIN+KYP++ + R Y SNA ++T EYVML GINDS A L Sbjct: 232 PDDKLRDEIVPINKKYPIQEFLAGVRRYLAKSNANQGKVTVEYVMLNGINDSTDQAHELA 291 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+L P KINLIPFNP+PG Y S I F++ + G +R RG DI AACG Sbjct: 292 KVLADTPCKINLIPFNPYPGSPYSRSSNSRIDRFAKVLSSYGLMVVVRKTRGDDIDAACG 351 Query: 364 QL-KSLSKRIPKVPRQEMQ 381 QL + R ++ +++M+ Sbjct: 352 QLVGDVVDRTKRMLKKQMK 370 >gi|91784209|ref|YP_559415.1| hypothetical protein Bxe_A1592 [Burkholderia xenovorans LB400] gi|123358658|sp|Q13X26|RLMN_BURXL RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|91688163|gb|ABE31363.1| 23S rRNA m(2)A-2503 methyltransferase [Burkholderia xenovorans LB400] Length = 383 Score = 448 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 152/384 (39%), Positives = 220/384 (57%), Gaps = 10/384 (2%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +L+ + + L +G R Q+ +WI+ DF GM+D+++ + Sbjct: 1 MTSSPTVNLLDLDAQGLVAYCDSLG----EKPFRARQLQRWIHQYNAADFDGMTDLAKSL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L +I P IV + IS DGTRKWL+ +G +ETVYIPE++RGTLCVSS Sbjct: 57 REKLKGRATISMPGIVSDHISTDGTRKWLI-----DVGNSNAVETVYIPEETRGTLCVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI- 179 Q GC++ C FC TG Q RNLT EI+ Q+ +A L G + G ++ Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLTTGEIIGQLRMAEFALRASRGVDGGRATGGDGKGERVV 171 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 +N+VMMGMGEPL N+D V ++ + D S+RR+TLSTSG VP + R+G ++ V L Sbjct: 172 TNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLPVAL 231 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA S+ LR++LVP+N+KYPL L+ AC+ Y ++ ITFEY ML G+NDS A Sbjct: 232 AVSLHAPSDPLRDMLVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDSEAQA 291 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L+ + + +P K NLIPFNP+P + S + I F++ + +G + +R RG DI Sbjct: 292 RELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQVLMDAGVITTVRKTRGDDID 351 Query: 360 AACGQLKSLSKRIPKVPRQEMQIT 383 AACGQL K ++ + + Sbjct: 352 AACGQLAGAVKDRTRLAERTGKAA 375 >gi|170694776|ref|ZP_02885927.1| radical SAM enzyme, Cfr family [Burkholderia graminis C4D1M] gi|170140407|gb|EDT08584.1| radical SAM enzyme, Cfr family [Burkholderia graminis C4D1M] Length = 383 Score = 448 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 150/384 (39%), Positives = 219/384 (57%), Gaps = 10/384 (2%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +L+ + + L +G R Q+ +WI+ DF GM+D+++ + Sbjct: 1 MTSSSTVNLLDLDAQGLVAYCDSLG----EKPFRAKQLQRWIHQYNAADFDGMTDLAKSL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L +I P IV + IS DGTRKWL+ +G +ETV+IPE++RGTLCVSS Sbjct: 57 REKLKGRATISMPGIVSDHISTDGTRKWLIE-----VGNSNAVETVFIPEETRGTLCVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI- 179 Q GC++ C FC TG Q RNLT EI+ Q+ +A L G + G ++ Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLTTGEIIGQLRMAEFALRASLGAAGGRAVGGEGKGERVV 171 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 +N+VMMGM EPL N+D V ++ + D S+RR+TLSTSG VP + R+G ++ V L Sbjct: 172 TNVVMMGMAEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLPVAL 231 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA S+ LR++LVP+N+KYPL L+ AC+ Y ++ ITFEY ML G+NDS A Sbjct: 232 AVSLHAPSDPLRDMLVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDSEAQA 291 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L+ + + +P K NLIPFNP+P + S + I F++ + +G + +R RG DI Sbjct: 292 RELLALTRDVPCKFNLIPFNPFPESGLVRSKSEQIKRFAQVLMDAGVVTTVRKTRGDDID 351 Query: 360 AACGQLKSLSKRIPKVPRQEMQIT 383 AACGQL K ++ + + Sbjct: 352 AACGQLAGAVKDRTRLAERTGKAA 375 >gi|205829853|sp|Q15R53|RLMN_PSEA6 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase Length = 376 Score = 448 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 158/379 (41%), Positives = 217/379 (57%), Gaps = 22/379 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ R L E IG R Q+ KWIY G+ DF M+++++ +R L Sbjct: 7 KINLLNFNRAGLREYFSSIG----EKPFRADQMMKWIYQAGVSDFDQMTNLNKALREKLK 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + PEI ++ + DGT K+ LR G E+ETV+IP++ R TLCVSSQVGC+ Sbjct: 63 AQCEVKAPEIAYQQGASDGTIKFALRLE-----GGQEVETVWIPDEDRATLCVSSQVGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC T Q RNL+ EI+ QV + +G + S R I+N+VMM Sbjct: 118 LECTFCSTAQQGFNRNLSVSEIIGQVWRVATTIG----------LSNDSAKRPITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N NV ++ + D + SKRR+TLSTSG VP + +G++I V LAISLHA Sbjct: 168 GMGEPLLNLKNVVPAMDLMLDDLAFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 + LR+ +VPIN+KYP++ + R Y SNA ++T EYVML GINDS A L Sbjct: 228 PDDKLRDEIVPINKKYPIQEFLAGVRRYLAKSNANQGKVTVEYVMLNGINDSTDQAHELA 287 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+L P KINLIPFNP+PG Y S I F++ + G +R RG DI AACG Sbjct: 288 KVLADTPCKINLIPFNPYPGSPYSRSSNSRIDRFAKVLSSYGLMVVVRKTRGDDIDAACG 347 Query: 364 QL-KSLSKRIPKVPRQEMQ 381 QL + R ++ +++M+ Sbjct: 348 QLVGDVVDRTKRMLKKQMK 366 >gi|148653702|ref|YP_001280795.1| radical SAM protein [Psychrobacter sp. PRwf-1] gi|205829828|sp|A5WGQ4|RLMN_PSYWF RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|148572786|gb|ABQ94845.1| radical SAM enzyme, Cfr family [Psychrobacter sp. PRwf-1] Length = 403 Score = 448 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 158/386 (40%), Positives = 223/386 (57%), Gaps = 26/386 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +++GM +E+L IG R +Q+ KWIY G+ DF M+++S+ +R L+ Sbjct: 23 KTNILGMNQEQLGAYFKHIG----EKPFRATQVMKWIYQHGVTDFAQMTNLSKGLREKLS 78 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVSS 120 + I PE++ ++ S DGTRKW+ + + G +ETV IP R TLC+SS Sbjct: 79 EQACIELPEVMHKEFSEDGTRKWVFK-----VAGGSLVETVLIPADDSKVNGRKTLCISS 133 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC+L CSFC TG Q R+LTA EI+ Q+ +A + + G+ ++ Sbjct: 134 QVGCALDCSFCSTGKQGFERDLTAAEIIGQLWVANASYME--------GVDSTEWQNNVT 185 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+ V S+ + SKRR+TLSTSG VP + + ++I V LA Sbjct: 186 NVVMMGMGEPLLNYTPVVSSMGLMLSDHAYGLSKRRVTLSTSGVVPKMYELYKDIDVALA 245 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP---GLSNARRITFEYVMLKGINDSPR 297 ISLHA +++LRN LVPIN+KYPL LI A + Y + + +T EYVML G+NDS Sbjct: 246 ISLHAPNDELRNELVPINKKYPLSELIAAAKAYVHDNNPRHKKHVTIEYVMLAGVNDSDE 305 Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 A L+ +L G+P+KINLIPFNP+P Y S I FS + +G+ IR RG D Sbjct: 306 HAQQLVALLDGLPSKINLIPFNPFPHAPYDRSSNNRIHAFSNILNNAGFVCTIRQTRGDD 365 Query: 358 ILAACGQL-KSLSKRIPKVPRQEMQI 382 I AACGQL ++ R + + + I Sbjct: 366 IDAACGQLVGQVADRTRRSAKWQQSI 391 >gi|270156690|ref|ZP_06185347.1| Cfr family radical SAM enzyme [Legionella longbeachae D-4968] gi|289164863|ref|YP_003455001.1| Fe-S containing enzyme [Legionella longbeachae NSW150] gi|269988715|gb|EEZ94969.1| Cfr family radical SAM enzyme [Legionella longbeachae D-4968] gi|288858036|emb|CBJ11896.1| putative Fe-S containing enzyme [Legionella longbeachae NSW150] Length = 376 Score = 448 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 170/374 (45%), Positives = 225/374 (60%), Gaps = 20/374 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ +++ E L R QI +WI+ G+ DF M+++ + +R L Sbjct: 4 QKVNLLNYNYQQMRELLSSW----DEQPYRAQQIIQWIHQAGLTDFAKMTNLGKTLREKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +Q I PEI+ + S DGT KWLL+ IETV+IPE +RGTLCVSSQVGC Sbjct: 60 SQLSCIKLPEIIACQKSNDGTHKWLLKLEC-----GNCIETVFIPEANRGTLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L CSFC T Q RNLT EI+ QV LA L G D ++++N+VM Sbjct: 115 ALNCSFCSTAKQGFNRNLTTAEIIGQVWLAVRELSQSQGNHD----------KRVTNVVM 164 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV ++ I D SKRR+TLSTSG +P++ R+ E V LA+SLH Sbjct: 165 MGMGEPLLNFDNVVSAMDIMMDDFAYGLSKRRVTLSTSGVLPDLERLREVSPVALAVSLH 224 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +++LRN LVPIN+KYPL L+ C+ Y R++TFEYVMLKG+ND P A+ LIK Sbjct: 225 APNDELRNELVPINKKYPLAQLMALCKIYFKNEPRRKVTFEYVMLKGVNDQPEHAIQLIK 284 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L+ IPAK+NLIPFNP+P +Y S Q+ I F E + G ++ R RG DI AACGQ Sbjct: 285 LLRNIPAKVNLIPFNPFPMTQYERSSQETIDAFREKLMAHGINTITRKTRGDDIDAACGQ 344 Query: 365 LKSLSK-RIPKVPR 377 L K R + R Sbjct: 345 LAGEVKDRTTRSQR 358 >gi|241662752|ref|YP_002981112.1| radical SAM enzyme, Cfr family [Ralstonia pickettii 12D] gi|240864779|gb|ACS62440.1| radical SAM enzyme, Cfr family [Ralstonia pickettii 12D] Length = 383 Score = 448 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 148/372 (39%), Positives = 215/372 (57%), Gaps = 16/372 (4%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+ L +G R Q+ +WI+ G DF M+D+++ +R L Sbjct: 5 VNLLDFDAHGLLAYCESLG----EKSFRAKQLQRWIHQSGASDFGEMTDLAKSLREKLAT 60 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 +I P ++ + +S DGTRKWL+ +G +ETVYIPE++RGTLCVSSQ GC++ Sbjct: 61 RANIQAPAVITDHLSSDGTRKWLV-----DVGQGNAVETVYIPEETRGTLCVSSQAGCAV 115 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG Q RNL+ EI+ Q+ +A + G P R I+N+VMMG Sbjct: 116 NCRFCSTGKQGFSRNLSTGEIIGQLWMAEFAMRKQLGR-------GPKDDRVITNVVMMG 168 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N+D V +L++ D S+RR+T+STSG VP + R+ ++ V LA+SLHA Sbjct: 169 MGEPLLNYDAVVPALALMLDDNAYGLSRRRVTVSTSGVVPMMDRLARDVPVALAVSLHAS 228 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ LR++LVP+N+KYPL L+ ACR Y + ITFEY ML G+ND+ A L++++ Sbjct: 229 NDALRDVLVPLNKKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDTVEHARELLRVV 288 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +P K NLIPFNP+P S+ + I FS+ + +G + IR RG DI AACGQL Sbjct: 289 ADVPCKFNLIPFNPFPESGLKRSNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDAACGQLA 348 Query: 367 SLSKRIPKVPRQ 378 K ++ + Sbjct: 349 GEVKDRTRLAER 360 >gi|254786618|ref|YP_003074047.1| 23S rRNA m2A2503 methyltransferase [Teredinibacter turnerae T7901] gi|237685384|gb|ACR12648.1| 23S rRNA m2A2503 methyltransferase [Teredinibacter turnerae T7901] Length = 399 Score = 448 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 155/382 (40%), Positives = 226/382 (59%), Gaps = 19/382 (4%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+GM + LE +G + R +Q+ KW++ G+ DF M++IS+ +R L Sbjct: 19 KVNLLGMSQGRLEAFFESLG----EKKFRATQVLKWVHQLGVTDFAQMTNISKALRERLA 74 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + PE++++ S DGTRK+L+R +GG IETV+IP+ RGTLCVSSQVGCS Sbjct: 75 DIAEVRIPEVIEQWDSTDGTRKFLIR-----VGGGNAIETVFIPDGERGTLCVSSQVGCS 129 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q R+LT++EI+ QV +A G RK++N+V+M Sbjct: 130 LDCSFCATGKQGFNRDLTSDEIIGQVWIAAKSFGQL-------QEGGARGDRKVTNVVLM 182 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+NV +++ + SKRR+TLSTSG VP + R+G+ LAISLHA Sbjct: 183 GMGEPLLNFENVVEAMHLMMHDNCYGISKRRVTLSTSGVVPQLDRLGKYTDACLAISLHA 242 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNLI 303 +++LRN LVPIN+KYP+ L+ + + Y R+IT EY ++ +ND A L+ Sbjct: 243 PNDELRNQLVPINKKYPIAQLLASAKRYIEGLPDAHRKITIEYTLIDQVNDRIEHAHELV 302 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK +P KINLIPFNP+ Y + F + + +GY++ +RT RG DI AACG Sbjct: 303 ELLKDVPVKINLIPFNPFGLSNYKKVSNNALRRFQQILIDAGYTATVRTTRGDDIDAACG 362 Query: 364 QLKS-LSKRIPKVPRQEMQITG 384 QL ++ R + R ++ Sbjct: 363 QLAGQVNDRTKRSQRYKLDQAA 384 >gi|16272313|ref|NP_438526.1| ribosomal RNA large subunit methyltransferase N [Haemophilus influenzae Rd KW20] gi|260580572|ref|ZP_05848400.1| ribosomal RNA large subunit methyltransferase N [Haemophilus influenzae RdAW] gi|1175973|sp|P44665|RLMN_HAEIN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|1573332|gb|AAC22023.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] gi|260092914|gb|EEW76849.1| ribosomal RNA large subunit methyltransferase N [Haemophilus influenzae RdAW] Length = 390 Score = 448 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 158/379 (41%), Positives = 218/379 (57%), Gaps = 24/379 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L Sbjct: 21 KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 76 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC Sbjct: 77 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 130 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F + R I+N+VM Sbjct: 131 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH Sbjct: 181 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 240 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ +VPIN+KY ++ LID+ Y +SNA ++T EYVML +ND A L Sbjct: 241 APNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGVEHAHQL 300 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+P Y S I F + + ++ IR RG DI AAC Sbjct: 301 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAAC 360 Query: 363 GQLKSLSKRIPKVPRQEMQ 381 GQL I + R M+ Sbjct: 361 GQLAGDV--IDRTKRTAMK 377 >gi|229846452|ref|ZP_04466560.1| hypothetical protein CGSHi7P49H1_07265 [Haemophilus influenzae 7P49H1] gi|229810545|gb|EEP46263.1| hypothetical protein CGSHi7P49H1_07265 [Haemophilus influenzae 7P49H1] Length = 383 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 158/379 (41%), Positives = 218/379 (57%), Gaps = 24/379 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L Sbjct: 14 KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 69 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC Sbjct: 70 KTVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F + R I+N+VM Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ +VPIN+KY ++ LID+ Y +SNA ++T EYVML +ND A L Sbjct: 234 APNDELRDEIVPINKKYNIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+P Y S I F + + ++ IR RG DI AAC Sbjct: 294 AEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAAC 353 Query: 363 GQLKSLSKRIPKVPRQEMQ 381 GQL I + R M+ Sbjct: 354 GQLAGDV--IDRTKRTAMK 370 >gi|167854516|ref|ZP_02477297.1| hypothetical protein HPS_02019 [Haemophilus parasuis 29755] gi|167854271|gb|EDS25504.1| hypothetical protein HPS_02019 [Haemophilus parasuis 29755] Length = 386 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 157/383 (40%), Positives = 220/383 (57%), Gaps = 23/383 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+++ E ++G R Q+ KWIY G +F M++I++ +R L Sbjct: 18 EKINLLNLNRQQMRELFAEMG----EKPFRADQLMKWIYHFGEDNFDNMTNINKVLREKL 73 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PE+ E+ S DGT KW + +IETVYIPE R TLCVSSQVGC Sbjct: 74 KRIAEIKAPEVAVEQRSADGTIKWAMWVGD------QQIETVYIPEDDRATLCVSSQVGC 127 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNL+ EI+ QV A ++G+F + R I+N+VM Sbjct: 128 ALACTFCSTAQQGFNRNLSVSEIIGQVWRASKIIGNFGV----------TGIRPITNVVM 177 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D SKRR+TLSTSG VP + ++ E+I V LAISLH Sbjct: 178 MGMGEPLLNMNNVIPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKMREQIDVALAISLH 237 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LRN L+P+N+KY ++MLID+ Y +SNA ++T EYVML +ND A L Sbjct: 238 APNDELRNELIPLNKKYNIKMLIDSVNKYLEVSNANHGKVTIEYVMLSHVNDDVEHAHQL 297 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK P+KINLIP+NP+P Y S I F + + G++ +R RG DI AAC Sbjct: 298 ADVLKNTPSKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVTVRKTRGDDIHAAC 357 Query: 363 GQLKSLS-KRIPKVPRQEMQITG 384 GQL R + + G Sbjct: 358 GQLAGDVIDRTKRTFEKRKFGEG 380 >gi|329912290|ref|ZP_08275720.1| hypothetical protein IMCC9480_747 [Oxalobacteraceae bacterium IMCC9480] gi|327545652|gb|EGF30807.1| hypothetical protein IMCC9480_747 [Oxalobacteraceae bacterium IMCC9480] Length = 388 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 149/382 (39%), Positives = 221/382 (57%), Gaps = 19/382 (4%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + +L+ + +L ++G R Q+ +WI+ G DF M+D+++ +R Sbjct: 1 MALTNLLDLDPAQLVAYCGELG----EKPFRAKQLQRWIHQFGASDFTAMTDLAKSLRDK 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L + P ++ + S DGTRKWLL +G +ETV+IPE++RGTLC+S+Q G Sbjct: 57 LATRAVVQSPAVISDHTSTDGTRKWLL-----DVGQGNAVETVFIPEENRGTLCISTQAG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C FC TG Q RNLT EI+ Q+ +A L G E P R+I+N+V Sbjct: 112 CAVNCRFCSTGKQGFNRNLTVGEIIGQLWMAEFELRKTKGIEPG-----PKGERQITNVV 166 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N++ +L + D S+RR+TLSTSG VPNI ++G++ V LA+SL Sbjct: 167 MMGMGEPLLNYEPTVTALKLMLDDNAYGLSRRRVTLSTSGVVPNIDKLGQDCPVALAVSL 226 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA ++ LR+ LVP+N+KYPL+ L+ AC Y + +TFEY ML G+ND+ + A L+ Sbjct: 227 HASNDALRDSLVPLNKKYPLKELMAACVRYLEFAPRDFVTFEYCMLDGVNDTEQHARELV 286 Query: 304 KILKG----IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 +++ +P K NLIPFNP+P S+ I F++ + +G + IR RG DI Sbjct: 287 ALVRHGAQLVPCKFNLIPFNPFPESGLTRSNNPQIKLFAQVLMDAGIVTTIRKTRGDDID 346 Query: 360 AACGQLKSLSKRIPKVPRQEMQ 381 AACGQL + KV ++ MQ Sbjct: 347 AACGQLAGEVQDRTKV-QERMQ 367 >gi|33597413|ref|NP_885056.1| hypothetical protein BPP2857 [Bordetella parapertussis 12822] gi|81579190|sp|Q7W6P5|RLMN_BORPA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|33573840|emb|CAE38149.1| conserved hypothetical protein [Bordetella parapertussis] Length = 382 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 148/383 (38%), Positives = 215/383 (56%), Gaps = 9/383 (2%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +++ +L+G+ L E + + G R Q+ +W++ RG F M+D++++ Sbjct: 1 MESVERVNLLGLDGAALSELVGQWG----GKPFRARQLQRWVHQRGADSFDAMTDLARDF 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L + I + E+ S DGTRKWL +G IETV+IPE RGTLC+SS Sbjct: 57 RAQLARDCVIEALPVNTEQRSSDGTRKWLF-----DVGQGNAIETVFIPEDDRGTLCISS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC + C FC TG Q RNL A EI+ Q+ A+ +L + G R IS Sbjct: 112 QAGCVVNCRFCSTGHQGFNRNLRASEIIGQLWWAKRVLEAAADTARLPGGKAGEDTRVIS 171 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+D V +L + D S+RR+T+STSG VP + R+ ++ + LA Sbjct: 172 NVVMMGMGEPLLNYDQVLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPLALA 231 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++ LR+ LVP+NRKYPL L+ AC Y + ITFEY ML GIND+ + A Sbjct: 232 VSLHAPNDALRDELVPLNRKYPLNALLAACERYLAHAPRDFITFEYCMLDGINDTDQHAR 291 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 LI++ + + K+NLIPFNP+P S + F++ + +G + +R RG DI A Sbjct: 292 ELIQLARQVRCKLNLIPFNPFPASGLKRSPSARVRVFAQRLMDAGIVTTVRKTRGDDIDA 351 Query: 361 ACGQLKSLSKRIPKVPRQEMQIT 383 ACGQL + ++ + T Sbjct: 352 ACGQLAGEVRDRTRITERNATRT 374 >gi|309782324|ref|ZP_07677051.1| radical SAM enzyme, Cfr family [Ralstonia sp. 5_7_47FAA] gi|308918942|gb|EFP64612.1| radical SAM enzyme, Cfr family [Ralstonia sp. 5_7_47FAA] Length = 383 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 147/372 (39%), Positives = 215/372 (57%), Gaps = 16/372 (4%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+ + L +G R Q+ +WI+ G DF M+D+++ +R L Sbjct: 5 VNLLDFDAQGLLAYCESLG----EKSFRAKQLQRWIHQSGASDFGEMTDLAKSLREKLAT 60 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 +I P ++ + +S DGTRKWL+ +G +ETVYIPE++RGTLCVSSQ GC++ Sbjct: 61 RANIQAPAVITDHLSSDGTRKWLV-----DVGQGNAVETVYIPEETRGTLCVSSQAGCAV 115 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG Q RNL+ EI+ Q+ +A + G P R I+N+VMMG Sbjct: 116 NCRFCSTGKQGFSRNLSTGEIIGQLWMAEFAMRKQLGR-------GPKDDRVITNVVMMG 168 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N+D V +L++ D S+RR+T+STSG VP + R+ ++ V LA+SLHA Sbjct: 169 MGEPLLNYDAVVPALALMLDDNAYGLSRRRVTVSTSGVVPMMDRLARDVPVALAVSLHAS 228 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ LR++LVP+N+KYPL L+ AC Y + ITFEY ML G+ND+ A L++++ Sbjct: 229 NDALRDVLVPLNKKYPLAELMAACCRYLEFAPRDFITFEYCMLDGVNDTVEHARELLRVV 288 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +P K NLIPFNP+P S+ + I FS+ + +G + IR RG DI AACGQL Sbjct: 289 ADVPCKFNLIPFNPFPESGLKRSNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDAACGQLA 348 Query: 367 SLSKRIPKVPRQ 378 K ++ + Sbjct: 349 GEVKDRTRLAER 360 >gi|206560249|ref|YP_002231013.1| radical SAM superfamily protein [Burkholderia cenocepacia J2315] gi|254807159|sp|B4EAX1|RLMN_BURCJ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|198036290|emb|CAR52186.1| radical SAM superfamily protein [Burkholderia cenocepacia J2315] Length = 379 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 149/378 (39%), Positives = 215/378 (56%), Gaps = 12/378 (3%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +L+ E L +G R Q+ +WI+ DF GM+D+++ + Sbjct: 1 MTSETSVNLLDFDAEGLVAYCGSLG----EKPFRAKQLQRWIHQYNAGDFDGMTDLAKSL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L SI+ PEI + +S DGTRKWL+ +G +ETV+IPE++RGTLCVSS Sbjct: 57 REKLKGRASIVMPEIASDHVSTDGTRKWLI-----DVGNGNAVETVFIPEETRGTLCVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC++ C FC TG Q RNL+ EI+ Q+ +A L G R ++ Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNG---KAERVVT 168 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+ V ++ + D S+RR+TLSTSG VP + R+G E+ V LA Sbjct: 169 NVVMMGMGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALA 228 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++ LR+ LVP+N+KYPL L+ AC+ Y ++ ITFEY ML G+ND+ A Sbjct: 229 VSLHAPNDALRDELVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHAR 288 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L+ + + +P K NLIPFNP+P + S + I F++ + +G + +R RG DI A Sbjct: 289 ELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDA 348 Query: 361 ACGQLKSLSKRIPKVPRQ 378 ACGQL K ++ + Sbjct: 349 ACGQLAGAVKDRTRLAER 366 >gi|289207917|ref|YP_003459983.1| radical SAM enzyme, Cfr family [Thioalkalivibrio sp. K90mix] gi|288943548|gb|ADC71247.1| radical SAM enzyme, Cfr family [Thioalkalivibrio sp. K90mix] Length = 377 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 167/359 (46%), Positives = 223/359 (62%), Gaps = 21/359 (5%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L+G R +L E L + G P R R +Q+ KW++ RG+ DF M+D+S+ +R L + Sbjct: 10 NLLGYSRSQLTELLAQWGEP----RFRATQLVKWMHQRGVTDFDAMTDVSRTLRERLARE 65 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 I PEI EK S DGT KW+LR IETV+IPE RGTLC+SSQVGC+L Sbjct: 66 TEIALPEIALEKASGDGTVKWVLRL-----ADGNAIETVFIPESGRGTLCISSQVGCALD 120 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C+FC T Q RNLTA EI+ QV LA L G + R +SN+V+MGM Sbjct: 121 CTFCSTAQQGFNRNLTAAEIIGQVWLAMQRLPAPEGRQ-----------RAVSNVVLMGM 169 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL N+D V + + +D S+RR+TLSTSG VP + R+ E V LA+SLHA + Sbjct: 170 GEPLANYDAVVAACQLMTDDNAYGLSRRRVTLSTSGLVPALDRLSEHTDVALAVSLHAPN 229 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALNLIKIL 306 ++LR+ LVPINRKYP+ L+++CR Y + A +TFEYV+L G+ND P A L +L Sbjct: 230 DELRDRLVPINRKYPIARLMESCRRYVEATGAHSGVTFEYVLLAGVNDRPEHANQLAGVL 289 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +GIP KINLIPFNP+PG + + DI F ++++GY + +R RG DI AACGQL Sbjct: 290 RGIPGKINLIPFNPFPGAPFDRPAEGDIERFERQLQKAGYVTTVRRTRGDDIDAACGQL 348 >gi|187478836|ref|YP_786860.1| hypothetical protein BAV2346 [Bordetella avium 197N] gi|123725044|sp|Q2KY87|RLMN_BORA1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|115423422|emb|CAJ49956.1| conserved hypothetical protein [Bordetella avium 197N] Length = 382 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 146/380 (38%), Positives = 217/380 (57%), Gaps = 10/380 (2%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M+ ++ +L+G+ + L + + + G R Q+ +W++ R + F M+D++++ Sbjct: 1 MDTVEPINLLGLDAKALTDLVGQWG----GKPFRARQLQRWVHQRSVDSFDAMTDLARDF 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L++ I + E+ S DGTRKWL +G IETV+IPE RGTLC+SS Sbjct: 57 RAQLSERAIIEALPVNIEQRSSDGTRKWLF-----DVGQGNAIETVFIPEDDRGTLCISS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC + C FC TG Q RNL EI+ Q+ A+ +L G + R IS Sbjct: 112 QAGCVVNCRFCSTGHQGFNRNLRTSEIIGQLWWAKRVLEADIGSARLANAGAEDT-RVIS 170 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+D V +L + D G S+RR+T+STSG VP + R+ ++ V LA Sbjct: 171 NVVMMGMGEPLLNYDQVLPALRLMLDDNGYGLSRRRVTVSTSGVVPMMDRLAQDCPVALA 230 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++ LR+ LVP+N+KYPL+ L+ AC Y + ITFEY ML GIND+ + A Sbjct: 231 VSLHAPNDALRDDLVPLNKKYPLKELLAACERYLAHAPRDFITFEYCMLDGINDTDQHAK 290 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 LI++ + + K+NLIPFNP+P S + F++ + +G + +R RG DI A Sbjct: 291 ELIQLARQVRCKLNLIPFNPFPASGLKRSAAPRVKVFAQRLMDAGIITTVRKTRGDDIDA 350 Query: 361 ACGQLKSLSKRIPKVPRQEM 380 ACGQL K ++ + Sbjct: 351 ACGQLAGEVKDRTRITERNA 370 >gi|126668577|ref|ZP_01739531.1| predicted Fe-S-cluster redox enzyme [Marinobacter sp. ELB17] gi|126626982|gb|EAZ97625.1| predicted Fe-S-cluster redox enzyme [Marinobacter sp. ELB17] Length = 370 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 161/375 (42%), Positives = 225/375 (60%), Gaps = 21/375 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+GM + +LE +G R R +Q+ +W++ RG+ DF M+++S+ +R L Sbjct: 6 EKTNLLGMPKAKLEAYFESLG----EKRFRATQVLQWVHQRGVGDFDEMTNMSKPLRDKL 61 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + PE+V ++++ DGTRKW++R IETV IP+ RGTLCVSSQ+GC Sbjct: 62 KLIAEVRGPEVVYDELAKDGTRKWVMRM-----DNGNNIETVLIPDGERGTLCVSSQIGC 116 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 SL CSFC TG + RNLT+ EI+ QV AR + P R I+N+VM Sbjct: 117 SLDCSFCSTGKRGFNRNLTSAEIIGQVWAARKTFMPY----------APGPDRPITNVVM 166 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV ++++ + + SKRR+TLSTSG VP I ++GE V LAISLH Sbjct: 167 MGMGEPLLNFDNVVDAMNLMMEDLAYGISKRRVTLSTSGVVPAIDKLGEVTDVSLAISLH 226 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYP-GLSNARRITFEYVMLKGINDSPRDALNLI 303 A +++LRN LVPIN+KYP+ L+ A R Y L + R+ T EY ++ G+ND A L Sbjct: 227 AANDELRNQLVPINKKYPIAELLAATRRYLSRLPDKRKATIEYTLMAGVNDHVDQARELA 286 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++L+G+P KINLIPFNP+P Y F + +GY + +R PRG DI AACG Sbjct: 287 EVLRGLPCKINLIPFNPFPESGYERPSMNATRRFQTVLNEAGYIATVRMPRGDDIDAACG 346 Query: 364 QLKSLSK-RIPKVPR 377 QL + R + R Sbjct: 347 QLVGKVEDRTRRSAR 361 >gi|93005478|ref|YP_579915.1| hypothetical protein Pcryo_0648 [Psychrobacter cryohalolentis K5] gi|123264706|sp|Q1QD22|RLMN_PSYCK RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|92393156|gb|ABE74431.1| conserved hypothetical protein [Psychrobacter cryohalolentis K5] Length = 413 Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats. Identities = 158/380 (41%), Positives = 224/380 (58%), Gaps = 19/380 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+GM + +L + IG R++Q+ KWIY +G+ DF+ M+++S+ +R L+ Sbjct: 32 KTNLLGMTQAQLADYFKSIG----EKPFRSTQVIKWIYQQGVTDFEQMTNLSKSLRDKLS 87 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVSS 120 + +I P+++ + S DGTRKW+ + G +ETV IP R TLCVSS Sbjct: 88 ANACVIPPKVIHRQYSDDGTRKWVFE-----VTGGSLVETVLIPADDSKLNGRKTLCVSS 142 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC+L CSFC TG Q R+LTA EIL Q+ +A + + +E + ++ Sbjct: 143 QVGCALDCSFCSTGKQGFERDLTAAEILGQLWVANASYM-TDENDSLENVDHSLWENNVT 201 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+ V S+ + SKRR+TLSTSG VP + + +E+ V LA Sbjct: 202 NVVMMGMGEPLLNYRPVVSSMELMLSDHAYGLSKRRVTLSTSGVVPKMYELAQELDVALA 261 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHY---PGLSNARRITFEYVMLKGINDSPR 297 ISLHA +++LRN LVPIN+KYPLE L+ A R+Y + + +T EYVML G+NDS Sbjct: 262 ISLHAPNDELRNELVPINKKYPLEQLMAAARNYVFDVNPRHKKHVTIEYVMLDGVNDSNE 321 Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 A L+ +L +P+KINLIPFNP+P Y S I FS + +G+ IR RG D Sbjct: 322 HAEQLVALLGNLPSKINLIPFNPFPHANYDKSSNNRIHAFSNILSEAGFVCTIRQTRGDD 381 Query: 358 ILAACGQL-KSLSKRIPKVP 376 I AACGQL ++ R + Sbjct: 382 IDAACGQLVGQVADRTRRSA 401 >gi|332284656|ref|YP_004416567.1| hypothetical protein PT7_1403 [Pusillimonas sp. T7-7] gi|330428609|gb|AEC19943.1| hypothetical protein PT7_1403 [Pusillimonas sp. T7-7] Length = 386 Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats. Identities = 151/381 (39%), Positives = 215/381 (56%), Gaps = 12/381 (3%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M+ + +L+G+ L + + + G R Q+ +W++ RG F M+D+++E Sbjct: 1 MSINESINLLGLDTPALTDLVGQWG----GKPFRAKQLQRWVHQRGADSFDDMTDLAREF 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L +H SI P + E+ S DGTRKWL +G +E V+IPE RGTLC+SS Sbjct: 57 RLQLAEHCSIAAPPVSIEQRSADGTRKWLF-----DVGKNNAVEAVFIPEDDRGTLCISS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL---LGDFPGCEDIEGMVIPSVGR 177 Q GC++ C FC TG Q RNLT EI+ Q+ AR + E P R Sbjct: 112 QAGCTVACPFCSTGYQGFNRNLTTAEIIGQLWHARRVLQSDMQSARTVSTETQTAPDPAR 171 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 ISN+VMMGMGEPL N+D V +L + D S+RR+T+STSG VP + R+G + V Sbjct: 172 VISNVVMMGMGEPLLNYDQVLGALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLGRDCPV 231 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 LA+SLHA ++ LR+ LVP+NRK+PL L+ AC Y + ITFEY+ML G+ND+ + Sbjct: 232 ALAVSLHAPNDALRDKLVPLNRKHPLAELLAACNRYLEHAPRDFITFEYIMLDGVNDTDQ 291 Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 A LI I + + K NLIPFNP+P S + F++ + +G + +R RG D Sbjct: 292 HARELITIAQQVRCKFNLIPFNPFPQSGLKRSPAARVRLFAQRLMDAGIVTTVRKTRGDD 351 Query: 358 ILAACGQLKSLSKRIPKVPRQ 378 I AACGQL K ++ ++ Sbjct: 352 IAAACGQLAGDVKDRTRISQR 372 >gi|160900454|ref|YP_001566036.1| radical SAM protein [Delftia acidovorans SPH-1] gi|160366038|gb|ABX37651.1| radical SAM enzyme, Cfr family [Delftia acidovorans SPH-1] Length = 397 Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats. Identities = 155/389 (39%), Positives = 211/389 (54%), Gaps = 28/389 (7%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN +L+ + L ++G R R +Q+++WI+ RG DF MSD+++ + Sbjct: 24 MNT----NLLDFDLDGLAAYCEQLG----EKRFRATQLFRWIHQRGASDFDQMSDLAKSL 75 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L I ++ E +S DGT KWL +GG +E V+IPE RGTLCVSS Sbjct: 76 REKLKACAHITALPVLTEHVSADGTVKWLF-----DVGGGDAVEAVFIPEDDRGTLCVSS 130 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC++ C FC TG Q RNL+ EIL Q+ A L G R IS Sbjct: 131 QAGCAVGCRFCSTGHQGFSRNLSTGEILAQLWYAEHSLRKRLGT---------GGERVIS 181 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+ + +L D G S+RR+T+STSG VP I R+ ++ V +A Sbjct: 182 NVVMMGMGEPLQNYTALVPALRAMLDDHGYGLSRRRVTVSTSGVVPMIDRLSQDCAVAMA 241 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA +++LR+ LVP+NRKYP+ L+DAC Y + ITFEY ML G+ND P A Sbjct: 242 VSLHAPNDELRDPLVPLNRKYPIHELLDACERYLEFAPRDFITFEYCMLDGVNDQPEHAR 301 Query: 301 NLIKILKGIP-----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 LI++++ K NLIPFNP+P L S + F+ + +G + +R RG Sbjct: 302 QLIELVRARGDGRSWCKFNLIPFNPFPASGLLRSPAARVTEFASLLSNAGIVTTVRKTRG 361 Query: 356 LDILAACGQLKSLSK-RIPKVPRQEMQIT 383 DI AACGQL K R R Q T Sbjct: 362 DDIDAACGQLAGDVKDRTRAAERMARQRT 390 >gi|253575779|ref|ZP_04853114.1| cfr family radical SAM enzyme [Paenibacillus sp. oral taxon 786 str. D14] gi|251844822|gb|EES72835.1| cfr family radical SAM enzyme [Paenibacillus sp. oral taxon 786 str. D14] Length = 348 Score = 448 bits (1152), Expect = e-123, Method: Composition-based stats. Identities = 128/365 (35%), Positives = 200/365 (54%), Gaps = 25/365 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K + EEL+E + G P R QI+ W+YV+ + F M+++S+ +R L Sbjct: 2 KPFIYDYTLEELQEWAVSQGEPA----FRGGQIFDWLYVKRVSSFDEMTNLSKALRQKLA 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F+ + + + + S DGT K+L IETV + ++CV++QVGC Sbjct: 58 DEFAFVTLQEITKLESKDGTVKFLFGLHDD-----HAIETVIMKHNYGNSICVTTQVGCK 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC + L RNLT EI+ QV+ A+ + + + G ++S+IV+M Sbjct: 113 VGCTFCASTLGGLKRNLTPGEIVAQVVQAQKI--------------LDAKGERVSSIVIM 158 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G GEP N+D K L I GL+ +R IT+STSG VPNI R +E + LAIS+H Sbjct: 159 GTGEPFENYDATMKFLRIMIHEKGLNIGQRHITVSTSGIVPNIYRFADENTQINLAISIH 218 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++ LR+ L+P+NR++P + +++A R+Y + RITFEY ++ G+ND P A L Sbjct: 219 APNDALRSKLMPVNRRFPFDDVMEALRYYIAKTGR-RITFEYALIGGVNDQPEHAEELAD 277 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 ++K + +NLIP N P +Y+ + + DI F + G + IR +G DI AACGQ Sbjct: 278 VIKDMLCHVNLIPVNYVPERKYVRTSRNDIFKFQRILADKGINVTIRREQGHDIAAACGQ 337 Query: 365 LKSLS 369 L++ Sbjct: 338 LRAKH 342 >gi|145632612|ref|ZP_01788346.1| hypothetical protein CGSHi3655_02319 [Haemophilus influenzae 3655] gi|144986807|gb|EDJ93359.1| hypothetical protein CGSHi3655_02319 [Haemophilus influenzae 3655] Length = 383 Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 159/379 (41%), Positives = 217/379 (57%), Gaps = 24/379 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+++ E ++G R Q+ KWIY G +F M +I++++R L Sbjct: 14 KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMININKKLREKL 69 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC Sbjct: 70 KAVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F + R I+N+VM Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ +VPIN+KY ++MLID+ Y +SNA ++T EYVML +ND A L Sbjct: 234 APNDELRDEIVPINKKYNIKMLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK P KINLIP+NP+P Y S I F + + ++ IR RG DI AAC Sbjct: 294 ADVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAAC 353 Query: 363 GQLKSLSKRIPKVPRQEMQ 381 GQL I + R M+ Sbjct: 354 GQLAGDV--IDRTKRTAMK 370 >gi|145634639|ref|ZP_01790348.1| hypothetical protein CGSHiAA_05421 [Haemophilus influenzae PittAA] gi|229844547|ref|ZP_04464687.1| hypothetical protein CGSHi6P18H1_09535 [Haemophilus influenzae 6P18H1] gi|145268184|gb|EDK08179.1| hypothetical protein CGSHiAA_05421 [Haemophilus influenzae PittAA] gi|229812796|gb|EEP48485.1| hypothetical protein CGSHi6P18H1_09535 [Haemophilus influenzae 6P18H1] Length = 383 Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 158/379 (41%), Positives = 217/379 (57%), Gaps = 24/379 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R L Sbjct: 14 KKINLMDLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKL 69 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PE+ E+ S DGT KW ++ G ++ETVYIPE R TLCVSSQVGC Sbjct: 70 KVVAEIKAPEVAVEQRSADGTIKWAMQV------GEQQVETVYIPEADRATLCVSSQVGC 123 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ QV A ++G+F + R I+N+VM Sbjct: 124 ALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLH Sbjct: 174 MGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLH 233 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +++LR+ +VPIN+KY ++ LID+ Y +SNA ++T EYVML +ND A L Sbjct: 234 APNDELRDEIVPINKKYNIKTLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQL 293 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK P KINLIP+NP+P Y S I F + + ++ IR RG DI AAC Sbjct: 294 ADVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAAC 353 Query: 363 GQLKSLSKRIPKVPRQEMQ 381 GQL I + R M+ Sbjct: 354 GQLAGDV--IDRTKRTAMK 370 >gi|71065245|ref|YP_263972.1| hypothetical protein Psyc_0679 [Psychrobacter arcticus 273-4] gi|123748144|sp|Q4FTX0|RLMN_PSYA2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|71038230|gb|AAZ18538.1| conserved hypothetical protein [Psychrobacter arcticus 273-4] Length = 409 Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 157/380 (41%), Positives = 224/380 (58%), Gaps = 19/380 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+GM + +L + IG R++Q+ KWIY +G+ DF+ M+++S+ +R L+ Sbjct: 28 KTNLLGMTQAQLADYFKSIG----EKPFRSTQVIKWIYQQGVTDFEQMTNLSKSLRDKLS 83 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVSS 120 + +I P+++ + S DGTRKW+ + G +ETV IP R TLC+SS Sbjct: 84 ANACVIPPKVIHRQYSDDGTRKWVFE-----VTGGSLVETVLIPADDSKLNGRKTLCISS 138 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC+L CSFC TG Q R+LTA EIL Q+ +A + + +E + ++ Sbjct: 139 QVGCALDCSFCSTGKQGFERDLTAAEILGQLWVANASYMS-DENDSLENIDHSLWENNVT 197 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+ V S+ + SKRR+TLSTSG VP + + +E+ V LA Sbjct: 198 NVVMMGMGEPLLNYRPVVSSMELMLSDHAYGLSKRRVTLSTSGVVPKMYELAKELDVALA 257 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHY---PGLSNARRITFEYVMLKGINDSPR 297 ISLHA +++LRN LVPIN+KYPLE L+ A R+Y + + +T EYVML G+NDS Sbjct: 258 ISLHAPNDELRNELVPINKKYPLEQLMAAARNYVFDVNPRHKKHVTIEYVMLDGVNDSNE 317 Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 A L+ +L +P+KINLIPFNP+P Y S I FS + +G+ IR RG D Sbjct: 318 HAEQLVALLGDLPSKINLIPFNPFPHANYDKSSNNRIHAFSNILSEAGFVCTIRQTRGDD 377 Query: 358 ILAACGQL-KSLSKRIPKVP 376 I AACGQL ++ R + Sbjct: 378 IDAACGQLVGQVADRTRRSA 397 >gi|254292458|ref|YP_003058481.1| radical SAM enzyme, Cfr family [Hirschia baltica ATCC 49814] gi|254040989|gb|ACT57784.1| radical SAM enzyme, Cfr family [Hirschia baltica ATCC 49814] Length = 390 Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 195/378 (51%), Positives = 267/378 (70%), Gaps = 15/378 (3%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L G+ +L E + +IGI ++ +MR +Q+ W++ G+ DF M++I++++R L + Sbjct: 20 VNLSGLSLVKLRERMEEIGIDKKKAKMRANQVSHWMHNFGVTDFDDMTNIAKDMRAKLVE 79 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGCS 125 + I P+I + K+S DGT+KWL RF G +E E+V+IP+ +R G LCVSSQVGC+ Sbjct: 80 NHIIARPDITEHKVSVDGTQKWLSRF-----GPGIEAESVFIPDVARSGALCVSSQVGCT 134 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L+C+FC+TGTQK+VRNLTA+EI+ QVL+AR LG++P PS RK++NIV M Sbjct: 135 LSCTFCHTGTQKMVRNLTAQEIVAQVLVARDTLGEWP---------TPSENRKLTNIVFM 185 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N DNV +++ SD G+S +RRIT+ST+G P I +G MLAISLHA Sbjct: 186 GMGEPLYNLDNVVEAIDTISDCEGISIGRRRITVSTAGVAPKIPELGARTNAMLAISLHA 245 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++DLR+ +VPIN+KY LE L DA R YP L N++R+TFEYVMLK +NDS +A++LIK+ Sbjct: 246 TNDDLRDEIVPINKKYNLECLFDAIRSYPDLGNSKRVTFEYVMLKDVNDSLAEAVDLIKL 305 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG+PAKINLIPFNPWPG Y CSD I TF+E + R+G S+PIRTPRG DI AACGQL Sbjct: 306 LKGLPAKINLIPFNPWPGSPYECSDWDKIETFAEVLNRAGLSAPIRTPRGRDIFAACGQL 365 Query: 366 KSLSKRIPKVPRQEMQIT 383 +S S + R + +I Sbjct: 366 RSESIKERASDRLKAKIA 383 >gi|114797352|ref|YP_762004.1| radical SAM protein [Hyphomonas neptunium ATCC 15444] gi|122942041|sp|Q0BWY9|RLMN_HYPNA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|114737526|gb|ABI75651.1| radical SAM enzyme, Cfr family [Hyphomonas neptunium ATCC 15444] Length = 387 Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 193/380 (50%), Positives = 263/380 (69%), Gaps = 15/380 (3%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ L G+ L+ + +G+ + MR QI +WI+ G DF M+DI++++R L Sbjct: 17 KKRLTGLSVPALKAEMEALGLEPKAANMRARQIRRWIHHFGTTDFAAMTDIAKDLRAQLA 76 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGC 124 + F + PEI D ++S DGT+KWL R+ G +E E+VYIP+ + G LCVSSQVGC Sbjct: 77 EKFEVERPEIADHQVSRDGTQKWLTRY-----GPGIEGESVYIPDVGKAGALCVSSQVGC 131 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC+TGTQ LVRNLTA EI+ QV++AR L ++P + R+++NIV Sbjct: 132 TLNCTFCHTGTQALVRNLTAAEIVQQVIIARDALSEWPSSIE---------ERRLTNIVF 182 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N DNV +++ SD G++ +RRIT+ST+G P I +GE G MLAISLH Sbjct: 183 MGMGEPLYNLDNVAEAIDTISDGDGMAIGRRRITVSTAGVAPKIPELGERTGAMLAISLH 242 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +NDLRN LVP+NRKY ++ L DA R YPGL NA+R+TFEYVMLKGIND+ +A +L+K Sbjct: 243 ATNNDLRNELVPLNRKYDIQTLFDAIRAYPGLGNAKRVTFEYVMLKGINDTLAEARDLVK 302 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 ++KG+P+KINLIPFNPWPG Y CSD + I F+E + R+GY+SPIRTPRG DILAACGQ Sbjct: 303 LMKGVPSKINLIPFNPWPGSPYECSDWETIEEFAEVLNRAGYASPIRTPRGRDILAACGQ 362 Query: 365 LKSLSKRIPKVPRQEMQITG 384 L+S S ++ ++ Q + Sbjct: 363 LRSESVKVRASELRKQQASA 382 >gi|307822494|ref|ZP_07652725.1| radical SAM enzyme, Cfr family [Methylobacter tundripaludum SV96] gi|307736098|gb|EFO06944.1| radical SAM enzyme, Cfr family [Methylobacter tundripaludum SV96] Length = 370 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 168/380 (44%), Positives = 237/380 (62%), Gaps = 25/380 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K +L+ R+ L +++G R +Q+ KWIY G+ DF M+++S+ +R L Sbjct: 11 KTINLLDFDRKGLAAFFVELG----EKPFRATQLLKWIYQEGVEDFDLMTNLSKSLRAYL 66 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 ++ I PEIV EK++ DGT KW+++ G IETV+IPE+ RGTLCVSSQ+GC Sbjct: 67 TENCYIATPEIVLEKVATDGTCKWVMQT-----GCGNRIETVFIPEEGRGTLCVSSQIGC 121 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNLT EI+ Q+ +A+ LG G +I+N+VM Sbjct: 122 ALACTFCSTAQQGFNRNLTTAEIIGQLFVAQKRLGP---------------GNRITNVVM 166 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV ++++ D SKRR+T+STSG VP + R+ + V LA+SLH Sbjct: 167 MGMGEPLLNFDNVVAAMNLMMDDFTFGLSKRRVTISTSGVVPAMYRLTQVCDVSLAVSLH 226 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV+++LR+ LVPIN+KYPL+ L++ACR ++ R +TFEYVML GINDS +DA L+K Sbjct: 227 AVTDELRDELVPINKKYPLKELMEACRDNAKIAPRRTVTFEYVMLDGINDSLQDARGLVK 286 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK +P+KINLIPFNP+P Y CS ++ I F + +G + +R RG DI AACGQ Sbjct: 287 LLKTVPSKINLIPFNPFPNSAYRCSSKEAINCFKTLLNDAGIVTTVRKTRGEDIDAACGQ 346 Query: 365 LKSLSKRIPKVPRQEMQITG 384 L K + ++Q G Sbjct: 347 LVGQVKDKSR-RHLKIQPAG 365 >gi|221198083|ref|ZP_03571129.1| radical SAM enzyme, Cfr family [Burkholderia multivorans CGD2M] gi|221204358|ref|ZP_03577375.1| radical SAM enzyme, Cfr family [Burkholderia multivorans CGD2] gi|221212767|ref|ZP_03585743.1| radical SAM enzyme, Cfr family [Burkholderia multivorans CGD1] gi|221166980|gb|EED99450.1| radical SAM enzyme, Cfr family [Burkholderia multivorans CGD1] gi|221175215|gb|EEE07645.1| radical SAM enzyme, Cfr family [Burkholderia multivorans CGD2] gi|221182015|gb|EEE14416.1| radical SAM enzyme, Cfr family [Burkholderia multivorans CGD2M] Length = 378 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 148/378 (39%), Positives = 216/378 (57%), Gaps = 12/378 (3%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +L+ E L +G R Q+ +WI+ DF GM+D+++ + Sbjct: 1 MTSETSVNLLDFDAEGLVAYCGSLG----EKPFRAKQLQRWIHQYNAGDFDGMTDLAKSL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L SI P+IV + +S DGTRKWL+ +G +ETV+IPE++RGTLCVSS Sbjct: 57 REKLKGRASITMPDIVSDHVSADGTRKWLV-----DVGNGNAVETVFIPEETRGTLCVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC++ C FC TG Q RNL+ EI+ Q+ +A L G R ++ Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNG---KAERVVT 168 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N++ V ++ + D S+RR+TLSTSG VP + R+G E+ V LA Sbjct: 169 NVVMMGMGEPLLNYNAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALA 228 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++ LR+ LVP+N+K+PL L+ AC+ Y ++ ITFEY ML G+ND+ A Sbjct: 229 VSLHAPNDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHAR 288 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L+ + + +P K NLIPFNP+P + S + I F++ + +G + +R RG DI A Sbjct: 289 ELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQILIDAGVVTTVRKTRGDDIDA 348 Query: 361 ACGQLKSLSKRIPKVPRQ 378 ACGQL K ++ + Sbjct: 349 ACGQLAGAVKDRTRLAER 366 >gi|78066584|ref|YP_369353.1| hypothetical protein Bcep18194_A5115 [Burkholderia sp. 383] gi|123770007|sp|Q39FQ7|RLMN_BURS3 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|77967329|gb|ABB08709.1| 23S rRNA m(2)A-2503 methyltransferase [Burkholderia sp. 383] Length = 379 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 149/378 (39%), Positives = 214/378 (56%), Gaps = 12/378 (3%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +L+ E L +G R Q+ +WI+ DF GM+D+++ + Sbjct: 1 MTSETTVNLLDFDAEGLVAYCGSLG----EKPFRAKQLQRWIHQYNAGDFDGMTDLAKSL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L SI PEI + +S DGTRKWL+ +G +ETV+IPE++RGTLCVSS Sbjct: 57 REKLKGRASIGMPEIASDHVSTDGTRKWLI-----DVGNGNAVETVFIPEETRGTLCVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC++ C FC TG Q RNL+ EI+ Q+ +A L G R ++ Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNG---KAERVVT 168 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+ V ++ + D S+RR+TLSTSG VP + R+G E+ V LA Sbjct: 169 NVVMMGMGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALA 228 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++ LR+ LVP+N+KYPL L+ AC+ Y ++ ITFEY ML G+ND+ A Sbjct: 229 VSLHAPNDPLRDELVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHAR 288 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L+ + + +P K NLIPFNP+P + S + I F++ + +G + +R RG DI A Sbjct: 289 ELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDA 348 Query: 361 ACGQLKSLSKRIPKVPRQ 378 ACGQL K ++ + Sbjct: 349 ACGQLAGAVKDRTRLAER 366 >gi|319790295|ref|YP_004151928.1| radical SAM enzyme, Cfr family [Thermovibrio ammonificans HB-1] gi|317114797|gb|ADU97287.1| radical SAM enzyme, Cfr family [Thermovibrio ammonificans HB-1] Length = 345 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 153/362 (42%), Positives = 217/362 (59%), Gaps = 26/362 (7%) Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69 + EL+E + +G R QI +W+Y + + F M+++S+E R LL++ Sbjct: 5 KDLTLPELKEFVTSLGFEP----YRAKQIAQWLYKKRVSSFDQMTNLSKEARKLLSEKAQ 60 Query: 70 IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129 I ++V + S DGTRK+L IE+V+IPEK TLCVS+QVGC C Sbjct: 61 IDLLKLVKVEESKDGTRKYLFELED-----GSRIESVFIPEKDWNTLCVSTQVGCPAGCR 115 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 FC T RNLTA EI+ Q + + +G+ R+ISN+V MGMGE Sbjct: 116 FCLTAKDGFTRNLTAGEIVDQYIQVQRDVGE---------------NRRISNVVFMGMGE 160 Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSN 248 PL NFDNVKK++ I + L S R++T+ST G VP I R+ +E+ V LA+SLHA ++ Sbjct: 161 PLLNFDNVKKAVEIMTHRDMLDLSTRKVTVSTVGIVPGIDRMAKEMNKVKLAVSLHATTD 220 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 ++RN+LVP+NRKYP+ ++ A R YP +N RI EYVMLKG+NDS DA L+K++KG Sbjct: 221 EVRNMLVPLNRKYPIGEIMAALRRYPADNNR-RIMIEYVMLKGVNDSLEDARRLVKLVKG 279 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 IP K+NLIPFNP+PG E+ + ++ I F + + ++ IR RG DI AACG L++ Sbjct: 280 IPVKVNLIPFNPYPGAEFEPTPREQIEAFQKVLWDHNIAAFIRDSRGQDISAACGMLRTK 339 Query: 369 SK 370 K Sbjct: 340 EK 341 >gi|134295845|ref|YP_001119580.1| radical SAM protein [Burkholderia vietnamiensis G4] gi|205829687|sp|A4JEP2|RLMN_BURVG RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|134139002|gb|ABO54745.1| 23S rRNA m(2)A-2503 methyltransferase [Burkholderia vietnamiensis G4] Length = 379 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 147/378 (38%), Positives = 215/378 (56%), Gaps = 12/378 (3%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +L+ E L +G R Q+ +WI+ DF GM+D+++ + Sbjct: 1 MTSETSVNLLDFDAEGLVAYCGSLG----EKPFRAKQLQRWIHQYNAGDFDGMTDLAKSL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L +I PEI + +S DGTRKWL+ +G +ETV+IPE++RGTLCVSS Sbjct: 57 REKLKGRATIGMPEIASDHVSADGTRKWLI-----DVGNGNAVETVFIPEETRGTLCVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC++ C FC TG Q RNL+ EI+ Q+ +A L G R ++ Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNG---KAERVVT 168 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N++ V ++ + D S+RR+TLSTSG VP + R+G E+ V LA Sbjct: 169 NVVMMGMGEPLLNYNAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALA 228 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++ LR+ LVP+N+K+PL L+ AC+ Y ++ ITFEY ML G+ND+ A Sbjct: 229 VSLHAPNDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHAR 288 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L+ + + +P K NLIPFNP+P + S + I F++ + +G + +R RG DI A Sbjct: 289 ELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDA 348 Query: 361 ACGQLKSLSKRIPKVPRQ 378 ACGQL K ++ + Sbjct: 349 ACGQLAGAVKDRTRLAER 366 >gi|205829861|sp|A9BMV6|RLMN_DELAS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase Length = 374 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 155/389 (39%), Positives = 211/389 (54%), Gaps = 28/389 (7%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN +L+ + L ++G R R +Q+++WI+ RG DF MSD+++ + Sbjct: 1 MNT----NLLDFDLDGLAAYCEQLG----EKRFRATQLFRWIHQRGASDFDQMSDLAKSL 52 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L I ++ E +S DGT KWL +GG +E V+IPE RGTLCVSS Sbjct: 53 REKLKACAHITALPVLTEHVSADGTVKWLF-----DVGGGDAVEAVFIPEDDRGTLCVSS 107 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC++ C FC TG Q RNL+ EIL Q+ A L G R IS Sbjct: 108 QAGCAVGCRFCSTGHQGFSRNLSTGEILAQLWYAEHSLRKRLGT---------GGERVIS 158 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+ + +L D G S+RR+T+STSG VP I R+ ++ V +A Sbjct: 159 NVVMMGMGEPLQNYTALVPALRAMLDDHGYGLSRRRVTVSTSGVVPMIDRLSQDCAVAMA 218 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA +++LR+ LVP+NRKYP+ L+DAC Y + ITFEY ML G+ND P A Sbjct: 219 VSLHAPNDELRDPLVPLNRKYPIHELLDACERYLEFAPRDFITFEYCMLDGVNDQPEHAR 278 Query: 301 NLIKILKGIP-----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 LI++++ K NLIPFNP+P L S + F+ + +G + +R RG Sbjct: 279 QLIELVRARGDGRSWCKFNLIPFNPFPASGLLRSPAARVTEFASLLSNAGIVTTVRKTRG 338 Query: 356 LDILAACGQLKSLSK-RIPKVPRQEMQIT 383 DI AACGQL K R R Q T Sbjct: 339 DDIDAACGQLAGDVKDRTRAAERMARQRT 367 >gi|187928149|ref|YP_001898636.1| radical SAM enzyme, Cfr family [Ralstonia pickettii 12J] gi|254807195|sp|B2U9U6|RLMN_RALPJ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|187725039|gb|ACD26204.1| radical SAM enzyme, Cfr family [Ralstonia pickettii 12J] Length = 383 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 147/372 (39%), Positives = 216/372 (58%), Gaps = 16/372 (4%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+ + L +G R Q+ +WI+ G +F M+D+++ +R L Sbjct: 5 VNLLDFDAQGLLAYCESLG----EKSFRAKQLQRWIHQSGASEFGEMTDLAKSLREKLAT 60 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 +I P ++ + +S DGTRKWL+ +G +ETVYIPE++RGTLCVSSQ GC++ Sbjct: 61 RANIQAPAVISDHLSSDGTRKWLV-----DVGQGNAVETVYIPEETRGTLCVSSQAGCAV 115 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG Q RNL+ EI+ Q+ +A + G P R I+N+VMMG Sbjct: 116 NCRFCSTGKQGFSRNLSTGEIIGQLWMAEFAMRKQLGR-------GPKDDRVITNVVMMG 168 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N+D V +L++ D S+RR+T+STSG VP + R+ ++ V LA+SLHA Sbjct: 169 MGEPLLNYDAVVPALALMLDDNAYGLSRRRVTVSTSGVVPMMDRLARDVPVALAVSLHAS 228 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ LR++LVP+N+KYPL L+ ACR Y + ITFEY ML G+ND+ A L++++ Sbjct: 229 NDALRDVLVPLNKKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDTVEHARELLRVV 288 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +P K NLIPFNP+P S+ + I FS+ + +G + IR RG DI AACGQL Sbjct: 289 ADVPCKFNLIPFNPFPESGLKRSNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDAACGQLA 348 Query: 367 SLSKRIPKVPRQ 378 K ++ + Sbjct: 349 GEVKDRTRLAER 360 >gi|192359958|ref|YP_001981965.1| radical SAM enzyme, Cfr family [Cellvibrio japonicus Ueda107] gi|190686123|gb|ACE83801.1| radical SAM enzyme, Cfr family [Cellvibrio japonicus Ueda107] Length = 402 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 159/375 (42%), Positives = 218/375 (58%), Gaps = 21/375 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+GM +L IG + R Q+ KWI+ G +F MS++S+ +R L Sbjct: 32 KVNLLGMPEAKLIAFFESIG----EKKFRAIQVMKWIHQLGADNFDDMSNVSKALRAKLK 87 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I PE+V + S DGTRK+L+R + G +ETV+IP+ RGTLCVSSQVGCS Sbjct: 88 DCAEIYAPEVVRQLDSADGTRKFLIR-----VAGGNVVETVFIPDGDRGTLCVSSQVGCS 142 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q R+LTA EI+ QV +A G + + R ++N+VMM Sbjct: 143 LDCSFCATGKQGFNRDLTAAEIIGQVWIAAKSFGQ----------LQANGPRTVTNVVMM 192 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++++ SKRR+TLSTSG VP + R+ + LAISLHA Sbjct: 193 GMGEPLLNFDNVVDAMNLMMHDNAYGISKRRVTLSTSGVVPQLDRLSQYTDACLAISLHA 252 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGL--SNARRITFEYVMLKGINDSPRDALNLI 303 +++LRN LVPINRKYP+ ML+D+ R Y R+IT EY ++ +ND P+ A L Sbjct: 253 PNDELRNELVPINRKYPIAMLLDSARRYIQSMPDTHRKITIEYTLIDQVNDRPQHAQQLA 312 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++L+ +P KINLIPFNP+ Y + F + + + GY + +RT RG DI AACG Sbjct: 313 ELLRDVPVKINLIPFNPFNLSNYKRVSNNALRKFQDILMQEGYITTVRTTRGDDIDAACG 372 Query: 364 QLKSLSKRIPKVPRQ 378 QL I + + Sbjct: 373 QLAGSVNDITRRSER 387 >gi|33151554|ref|NP_872907.1| hypothetical protein HD0319 [Haemophilus ducreyi 35000HP] gi|81423849|sp|Q7VNZ4|RLMN_HAEDU RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|33147774|gb|AAP95296.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP] Length = 393 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 159/378 (42%), Positives = 218/378 (57%), Gaps = 23/378 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ M R+E+ E L +G R Q+ KWIY G +F MS+I++ +R L Sbjct: 25 EKVNLMNMTRQEMREFLANLG----EKPFRADQLMKWIYHFGEDEFDNMSNINKVLREKL 80 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I P I E+ S DGT KW ++ G +IETVYIPE R TLCVSSQVGC Sbjct: 81 KKVAEIKAPAIAIEQRSSDGTIKWAMQV------GNQQIETVYIPEGDRATLCVSSQVGC 134 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNLT EI+ QV A ++G+F + R I+N+VM Sbjct: 135 ALECKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGI----------TGVRPITNVVM 184 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D SKRR+TLST+G VP + + E+I V LAISLH Sbjct: 185 MGMGEPLLNMNNVIPAMQIMLDDFAYGLSKRRVTLSTAGVVPALDLMREKIDVALAISLH 244 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302 A +N+LRN ++PIN+KY ++ML+D+ Y +SNA ++T EYV+L +ND A L Sbjct: 245 APNNELRNEIMPINKKYNIKMLMDSVAKYLAVSNANHGKVTIEYVLLDHVNDGTEHAHQL 304 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK P KINLIP+NP+P Y S + F + + G++ +R RG DI AAC Sbjct: 305 AEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAAC 364 Query: 363 GQLKSLS-KRIPKVPRQE 379 GQL R + + Sbjct: 365 GQLAGEVIDRTKRTLEKR 382 >gi|292491212|ref|YP_003526651.1| radical SAM protein [Nitrosococcus halophilus Nc4] gi|291579807|gb|ADE14264.1| radical SAM enzyme, Cfr family [Nitrosococcus halophilus Nc4] Length = 372 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 165/384 (42%), Positives = 228/384 (59%), Gaps = 20/384 (5%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M + +L+ + R LE ++G R Q+ +W++ + + DF M+D+S+ + Sbjct: 1 MMTDSRINLLNLDRVGLEAFFARLG----EKPFRARQMLRWLHQQFVTDFSAMTDLSKSL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L + I PE+V + S DGT KWLLR + G IETV+IPE+ RGTLCVSS Sbjct: 57 RARLAETAVIALPEVVHQHHSTDGTYKWLLR-----VSGGNCIETVFIPEEDRGTLCVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC L CSFC TG Q RNL EI+ Q+ LA LG P E R I+ Sbjct: 112 QVGCILDCSFCATGKQGFNRNLGVSEIIGQLWLANKALGRDPKGE-----------RIIT 160 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL NF+NV ++++ D S RR+TLST+G VP + R+ V LA Sbjct: 161 NVVMMGMGEPLANFNNVVAAMNLMLDDFSYGLSWRRVTLSTAGMVPAMDRLRAICPVSLA 220 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA +++LR+ LVP+N++YP+ L+ ACR Y R +TFEYVML G+NDS + A Sbjct: 221 VSLHAPTDELRDELVPLNKRYPIGELLAACRRYVAGDRRRAVTFEYVMLAGVNDSLQHAR 280 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L+++L+G+PAK+NLIPFNP+PG Y SD + I F E + R G + R RG DI A Sbjct: 281 ALLRLLQGLPAKVNLIPFNPFPGSLYRRSDTETIDRFREELLRGGLMTVTRKTRGDDIAA 340 Query: 361 ACGQLKSLSKRIPKVPRQEMQITG 384 ACGQL + + + ++ G Sbjct: 341 ACGQLAGRVQDRTRRTLNQQRVAG 364 >gi|222110300|ref|YP_002552564.1| radical sam enzyme, cfr family [Acidovorax ebreus TPSY] gi|221729744|gb|ACM32564.1| radical SAM enzyme, Cfr family [Acidovorax ebreus TPSY] Length = 383 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 150/382 (39%), Positives = 211/382 (55%), Gaps = 25/382 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+ + L ++G R R +Q+++WI+ RG DF MSD+++ +R L Sbjct: 12 TNLLDFDLDGLAAFCERLG----EKRFRATQLFRWIHQRGASDFDQMSDLAKSLREKLRG 67 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + + + E +S DGT KWL +G +ETV+IPE RGTLC+SSQ GC++ Sbjct: 68 CAHVAGLQAISEHVSADGTVKWLF-----DVGDGNAVETVFIPEDDRGTLCISSQAGCAV 122 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG Q RNLT EIL Q+ A L G R ISN+VMMG Sbjct: 123 GCRFCSTGHQGFSRNLTTGEILAQLWYAEHALRQRRG----------DGERVISNVVMMG 172 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N+ + +L + D G S+RR+T+STSG VP + R+ ++ V LA+SLHA Sbjct: 173 MGEPLQNYAALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLAQDCPVALAVSLHAP 232 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ LR+ LVP+NRKYPL L+ ACR Y + ITFEY ML+G+ND P A LI ++ Sbjct: 233 NDVLRDNLVPLNRKYPLHELLAACRRYLDHAPRDFITFEYCMLEGVNDQPEHARQLIDLV 292 Query: 307 ------KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 G+ K NLIPFNP+P S + F++ + +G + +R RG DI A Sbjct: 293 GRKAADGGVSCKFNLIPFNPFPASGLRRSPPAAVTAFAQLLSDAGIVTTVRKTRGDDIDA 352 Query: 361 ACGQLKSLSKRIPKVPRQEMQI 382 ACGQL K +V + ++ Sbjct: 353 ACGQLAGDVKDRTRVNERMAKL 374 >gi|107029007|ref|YP_626102.1| hypothetical protein Bcen_6265 [Burkholderia cenocepacia AU 1054] gi|116689835|ref|YP_835458.1| radical SAM protein [Burkholderia cenocepacia HI2424] gi|170733174|ref|YP_001765121.1| radical SAM protein [Burkholderia cenocepacia MC0-3] gi|123179922|sp|Q1BGX6|RLMN_BURCA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829678|sp|B1JT94|RLMN_BURCC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829679|sp|A0K7T8|RLMN_BURCH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|105898171|gb|ABF81129.1| 23S rRNA m(2)A-2503 methyltransferase [Burkholderia cenocepacia AU 1054] gi|116647924|gb|ABK08565.1| 23S rRNA m(2)A-2503 methyltransferase [Burkholderia cenocepacia HI2424] gi|169816416|gb|ACA90999.1| radical SAM enzyme, Cfr family [Burkholderia cenocepacia MC0-3] Length = 379 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 148/378 (39%), Positives = 215/378 (56%), Gaps = 12/378 (3%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +L+ E L +G R Q+ +WI+ DF GM+D+++ + Sbjct: 1 MTSETSVNLLDFDAEGLVAYCGSLG----EKPFRAKQLQRWIHQYNAGDFDGMTDLAKSL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L SI+ P+I + +S DGTRKWL+ +G +ETV+IPE++RGTLCVSS Sbjct: 57 REKLKGRASIVMPDIASDHVSTDGTRKWLI-----DVGNGNAVETVFIPEETRGTLCVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC++ C FC TG Q RNL+ EI+ Q+ +A L G R ++ Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNG---KAERVVT 168 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+ V ++ + D S+RR+TLSTSG VP + R+G E+ V LA Sbjct: 169 NVVMMGMGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALA 228 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++ LR+ LVP+N+KYPL L+ AC+ Y ++ ITFEY ML G+ND+ A Sbjct: 229 VSLHAPNDALRDELVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHAR 288 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L+ + + +P K NLIPFNP+P + S + I F++ + +G + +R RG DI A Sbjct: 289 ELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDA 348 Query: 361 ACGQLKSLSKRIPKVPRQ 378 ACGQL K ++ + Sbjct: 349 ACGQLAGAVKDRTRLAER 366 >gi|145589473|ref|YP_001156070.1| radical SAM protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|205829801|sp|A4SYE2|RLMN_POLSQ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|145047879|gb|ABP34506.1| 23S rRNA m(2)A-2503 methyltransferase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 402 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 148/380 (38%), Positives = 217/380 (57%), Gaps = 13/380 (3%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 + +L+ +++ + + R Q+ +WI+ RG+ D MSD+++ R L Sbjct: 4 PRVNLLDFDADQMAAYVAGL----NEKPFRAKQLMQWIHQRGVSDINDMSDLAKSFRATL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 ++ ++ ++ + DGTRKWLL +G +E+V+IPE RGTLC+SSQ GC Sbjct: 60 LDKVEVLSLPVIKDEHATDGTRKWLL-----DVGAGNAVESVFIPEDDRGTLCISSQAGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC----EDIEGMVIPSVGRKIS 180 ++ C FC TG Q RNLT+ EI+ Q+ A LL + P E GR IS Sbjct: 115 AVNCRFCSTGRQGFSRNLTSGEIIGQLWFAEHLLRNDPEAIRRIEKYPTPGWEHTGRVIS 174 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+DNV +L + D S+RR+T+STSG VP I R+ ++ V LA Sbjct: 175 NVVMMGMGEPLLNYDNVVSALRLMLDDRAYGLSRRRVTVSTSGVVPMIDRLAQDCPVALA 234 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++ LR+ LVP+N+KYPL L+DAC Y + +TFEY ML G+NDS A Sbjct: 235 VSLHAPNDALRDQLVPLNQKYPLRELLDACERYLPFAPRDFLTFEYCMLDGVNDSDIQAK 294 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L+++L+ I KINLIPFNP+P S + + F+ + +G + +R RG DI A Sbjct: 295 ELVRLLRNIKCKINLIPFNPFPESGLKRSSAQRVNAFAGILLDAGMVATVRKTRGDDIAA 354 Query: 361 ACGQLKSLSKRIPKVPRQEM 380 ACGQL +V +++ Sbjct: 355 ACGQLAGDVVDRTRVRERDI 374 >gi|171059552|ref|YP_001791901.1| radical SAM protein [Leptothrix cholodnii SP-6] gi|205829645|sp|B1XXL6|RLMN_LEPCP RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|170776997|gb|ACB35136.1| radical SAM enzyme, Cfr family [Leptothrix cholodnii SP-6] Length = 393 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 149/384 (38%), Positives = 207/384 (53%), Gaps = 18/384 (4%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + +L+ + L ++G R R Q+++WI+ RG DF MSD+++ +R Sbjct: 1 MTAVNLLDFDLDALAAYCEQLG----EKRFRAVQLFRWIHQRGAADFGQMSDLAKSLRSK 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L I ++ E S DGT KWL +G +ETVYIPE R TLC+SSQ G Sbjct: 57 LADVACIAPLRVLSEHRSSDGTIKWLF-----DVGDGNAVETVYIPEDDRATLCISSQAG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR---SLLGDFPGCEDIEGMVIPSVGRKIS 180 C++ C FC TG Q RNL+ EIL Q+ A P+ R IS Sbjct: 112 CAVGCRFCSTGHQGFSRNLSTAEILAQLWYAEHSLRRERAEGVSVGARAATGPASERIIS 171 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+ V +L + D G S+RR+T+STSG VP I R+ ++ V LA Sbjct: 172 NVVMMGMGEPLQNYAAVLPALRVMLDDHGYGLSRRRVTVSTSGVVPMIDRLAADLPVALA 231 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA + LR++LVP+NRKYPL L+ AC+ Y + ITFEY ML G+NDS A Sbjct: 232 VSLHACDDALRDVLVPLNRKYPLAELLGACQAYLASAPRDFITFEYCMLDGVNDSDEQAR 291 Query: 301 NLIKILKG------IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 L+K++ +P K NLIPFNP+P S + + F++ + G + +R R Sbjct: 292 ALLKLVGDKGPVGRLPCKFNLIPFNPFPESGLKRSGNERVQAFAQVLIDGGLVTTVRKTR 351 Query: 355 GLDILAACGQLKSLSKRIPKVPRQ 378 G DI AACGQL + +V + Sbjct: 352 GDDIDAACGQLAGEVQDRTRVQER 375 >gi|167587047|ref|ZP_02379435.1| radical SAM enzyme, Cfr family protein [Burkholderia ubonensis Bu] Length = 379 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 148/378 (39%), Positives = 217/378 (57%), Gaps = 12/378 (3%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +L+ E L +G R Q+ +WI+ DF GM+D+++ + Sbjct: 1 MTSETSVNLLDFDAEGLVAYCGSLG----EKPFRAKQLQRWIHQYNAGDFDGMTDLAKSL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L SI+ P+IV + +S DGTRKWL+ +G +ETV+IPE++RGTLCVSS Sbjct: 57 REKLKGRASIVMPDIVSDHVSTDGTRKWLI-----DVGNGNAVETVFIPEETRGTLCVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC++ C FC TG Q RNL+ EI+ Q+ +A L G R ++ Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNG---KAERVVT 168 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+ V ++ + D S+RR+TLSTSG VP + R+G E+ V LA Sbjct: 169 NVVMMGMGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALA 228 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++ LR++LVP+N+K+PL L+ AC+ Y ++ ITFEY ML G+ND+ A Sbjct: 229 VSLHAPNDALRDMLVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHAR 288 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L+ + + +P K NLIPFNP+P + S + I F++ + +G + +R RG DI A Sbjct: 289 ELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQILIDAGVVTTVRKTRGDDIDA 348 Query: 361 ACGQLKSLSKRIPKVPRQ 378 ACGQL K ++ + Sbjct: 349 ACGQLAGAVKDRTRLAER 366 >gi|52425971|ref|YP_089108.1| hypothetical protein MS1916 [Mannheimia succiniciproducens MBEL55E] gi|81386653|sp|Q65R87|RLMN_MANSM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|52308023|gb|AAU38523.1| unknown [Mannheimia succiniciproducens MBEL55E] Length = 371 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 156/380 (41%), Positives = 217/380 (57%), Gaps = 23/380 (6%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 +K +L+ + R+++ E ++G R Q+ KWIY G +F M++I++++R Sbjct: 1 MTEKINLMNLTRQQMREFFKELG----EKPFRADQLVKWIYHFGEDNFDNMTNINKKLRD 56 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L I PEI E+ S DGT KW ++ +IETVYIPE R TLCVSSQV Sbjct: 57 KLKAVAEIKAPEIAVEQRSADGTIKWAMQVGD------QQIETVYIPEADRATLCVSSQV 110 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L C+FC T Q RNLT EI+ QV A ++G+F + R I+N+ Sbjct: 111 GCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKVIGEFGV----------TGIRPITNV 160 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL N NV ++ + D SKRR+TLSTSG VP + + I V LAIS Sbjct: 161 VMMGMGEPLLNVANVVPAMELMLDDFAYGLSKRRVTLSTSGVVPALDNLSGMIDVALAIS 220 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDAL 300 LHA +++LR+ +VPIN+KY ++MLID+ Y +SNA ++T EYVML +NDS A Sbjct: 221 LHAPNDELRDEIVPINKKYNIKMLIDSVNRYLSVSNANHGKVTIEYVMLDHVNDSIEHAH 280 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L ++LK P KINLIP+NP+P Y S + F + + G++ +R RG DI A Sbjct: 281 QLAEVLKNTPCKINLIPWNPFPQAPYGKSSNTRVDKFQKTLMEYGFTVIVRKTRGDDIDA 340 Query: 361 ACGQLKSLS-KRIPKVPRQE 379 ACGQL R + + Sbjct: 341 ACGQLAGDVIDRTKRTAAKR 360 >gi|167562546|ref|ZP_02355462.1| radical SAM enzyme, Cfr family protein [Burkholderia oklahomensis EO147] Length = 378 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 147/372 (39%), Positives = 214/372 (57%), Gaps = 12/372 (3%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+ + E L +G R Q+ +WI+ DF GM+D+++ +R L Sbjct: 7 VNLLDLDAEGLVAYCGSLG----EKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKG 62 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I P+I+ + +S DGTRKWL+ +G +ETV+IPE++RGTLCVSSQ GC++ Sbjct: 63 RAVIGTPDILSDHVSADGTRKWLI-----NVGSGNAVETVFIPEETRGTLCVSSQAGCAV 117 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG Q RNL+ EI+ Q+ +A L G E R I+N+VMMG Sbjct: 118 NCRFCSTGKQGFSRNLSTGEIVGQLRMAEFALRASLGREPGPNG---RADRVITNVVMMG 174 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N+ V ++ + D S+RR+TLSTSG VP + ++G E+ V LA+SLHA Sbjct: 175 MGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDKLGAELPVALAVSLHAP 234 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ LR+ LVP+N+K+PL L+ AC+ Y ++ ITFEY ML G+ND+ A L+ + Sbjct: 235 NDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLALT 294 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + +P K NLIPFNP+P + S I F++ + +G + IR RG DI AACGQL Sbjct: 295 RDVPCKFNLIPFNPFPESGLVRSKPDQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLA 354 Query: 367 SLSKRIPKVPRQ 378 K ++ + Sbjct: 355 GAVKDRTRLAER 366 >gi|120610108|ref|YP_969786.1| radical SAM protein [Acidovorax citrulli AAC00-1] gi|205829658|sp|A1TM24|RLMN_ACIAC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|120588572|gb|ABM32012.1| 23S rRNA m(2)A-2503 methyltransferase [Acidovorax citrulli AAC00-1] Length = 373 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 150/383 (39%), Positives = 215/383 (56%), Gaps = 25/383 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++L+ + L ++G R R Q+++WI+ RG DF MSD+++ +R L+ Sbjct: 3 KNLLDFDLDGLAAFCEQLG----EKRFRAVQLFRWIHQRGASDFARMSDLAKSLREKLSG 58 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + ++ E +S DGT KWL +G +E+V+IPE RGTLC+SSQ GC++ Sbjct: 59 CAHVAALPVISEHVSADGTVKWLF-----DVGDGNAVESVFIPEDDRGTLCISSQAGCAV 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG Q RNLT+ EI+ Q+ A L G ++ R ISN+VMMG Sbjct: 114 GCRFCSTGHQGFSRNLTSGEIVAQLWFAEHALRARLGTQE----------RVISNVVMMG 163 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N+ + +L D G S+RR+T+STSG VP + R+ ++ V +A+SLHA Sbjct: 164 MGEPLQNYTALVPALRTMLDDHGYGLSRRRLTVSTSGVVPMMDRLSQDCAVAMAVSLHAP 223 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ LR+ LVP+NRKYPL L+DAC Y + ITFEY ML G+ND P A LI ++ Sbjct: 224 NDALRDQLVPLNRKYPLRELLDACTRYLEHAPRDFITFEYCMLDGVNDQPEHARQLIDLV 283 Query: 307 K-----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 + G+ K NLIPFNP+P S+ + + F++ + +G + +R RG DI AA Sbjct: 284 RPRGGEGVRCKFNLIPFNPFPASGLHRSNPQQVAAFAKMLSDAGIVTTVRKTRGDDIDAA 343 Query: 362 CGQLKSLSK-RIPKVPRQEMQIT 383 CGQL K R R Q T Sbjct: 344 CGQLAGDVKDRTRAAERMARQRT 366 >gi|254480238|ref|ZP_05093486.1| radical SAM enzyme, Cfr family [marine gamma proteobacterium HTCC2148] gi|214039800|gb|EEB80459.1| radical SAM enzyme, Cfr family [marine gamma proteobacterium HTCC2148] Length = 391 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 154/376 (40%), Positives = 218/376 (57%), Gaps = 22/376 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+G+ +E+ L++G + R Q+ KWI+ G+ D MS++ + +R L Sbjct: 17 EKVNLLGLPLAAMEQYFLELG----EKKFRAQQVLKWIHHHGVTDIDEMSNLGKVLREKL 72 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PEIV + S DGTRKW +R + +E V IP+ R TLCVSSQVGC Sbjct: 73 KSVAEIKPPEIVSQHDSNDGTRKWAIRVEGGGL-----VEAVLIPDGKRATLCVSSQVGC 127 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 SL CSFC TG Q R+L+A EI+ QV LA F + GR ++N+VM Sbjct: 128 SLDCSFCSTGKQGFQRDLSAAEIIGQVWLAIKSYDAFQSAK----------GRIVTNVVM 177 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV ++ + + SKRR+TLSTSG VP + ++ + V LA+SLH Sbjct: 178 MGMGEPLLNFDNVVAAMDLMMEDNAYGISKRRVTLSTSGVVPALDKLAKVSEVSLAVSLH 237 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYP-GLSNARRI-TFEYVMLKGINDSPRDALNL 302 A ++ LR+ LVPINRKYP+ +L+++ R+Y S+ +R+ T EY ++ G+ND A L Sbjct: 238 APNDALRSELVPINRKYPIAVLLESARNYIDAQSDKKRVVTIEYTLIAGVNDQREHAQEL 297 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LKG P KINLIPFN + +Y + F + + +GY +RT RG DI AAC Sbjct: 298 AQLLKGYPCKINLIPFNTFDQSDYRRPSGNAVSRFWQVLVDAGYIVTVRTTRGDDIDAAC 357 Query: 363 GQL-KSLSKRIPKVPR 377 GQL + R + R Sbjct: 358 GQLVGQVVDRTRRSER 373 >gi|264679426|ref|YP_003279333.1| radical SAM enzyme, Cfr family [Comamonas testosteroni CNB-2] gi|262209939|gb|ACY34037.1| radical SAM enzyme, Cfr family [Comamonas testosteroni CNB-2] Length = 369 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 153/380 (40%), Positives = 208/380 (54%), Gaps = 25/380 (6%) Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69 + E L ++G R R +Q+++WI+ RG DF M+D+++ +R L Sbjct: 2 LDFDLEGLTAYCEQLG----EKRFRATQLFRWIHQRGASDFDQMTDLAKSLREKLKSRAH 57 Query: 70 IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129 I +V E +S DGT KWL +G +E+V+IPE RGTLCVSSQ GC++ C Sbjct: 58 ITALPVVTEHVSADGTVKWLF-----DVGDGNAVESVFIPEDDRGTLCVSSQAGCAVGCR 112 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 FC TG Q RNL EIL Q+ A L G ED R ISN+VMMGMGE Sbjct: 113 FCSTGHQGFSRNLNTGEILAQLWYAEHSLRKRFGTED----------RIISNVVMMGMGE 162 Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSND 249 PL N+ + +L + D G S+RR+T+STSG VP + R+ ++ V LA+SLHA ++ Sbjct: 163 PLQNYSALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLSQDCAVALAVSLHAPNDP 222 Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309 LR+ LVP+N+KYP+ L+DAC Y + ITFEY ML G+ND P A LI++++ Sbjct: 223 LRDNLVPLNKKYPIAELLDACERYLEFAPRDFITFEYCMLDGVNDQPEHARQLIELVRAR 282 Query: 310 P-----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 K NLIPFNP+P L S + F+ + +G + +R RG DI AACGQ Sbjct: 283 GDGKSWCKFNLIPFNPFPASGLLRSPSARVTEFATLLSNAGIVTTVRKTRGDDIDAACGQ 342 Query: 365 LKSLSK-RIPKVPRQEMQIT 383 L K R R Q T Sbjct: 343 LAGDVKDRTRAAERMAKQRT 362 >gi|119944920|ref|YP_942600.1| hypothetical protein Ping_1165 [Psychromonas ingrahamii 37] gi|205829827|sp|A1SU36|RLMN_PSYIN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|119863524|gb|ABM03001.1| radical SAM enzyme, Cfr family protein [Psychromonas ingrahamii 37] Length = 372 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 155/384 (40%), Positives = 219/384 (57%), Gaps = 24/384 (6%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN +KK +L+ + RE L +++G R Q+ KWIY G DF MS++++++ Sbjct: 1 MN-IKKVNLLDLNREGLRAFFVELG----EKPFRAEQVMKWIYHYGCEDFDLMSNVNKKL 55 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L + I+ PEI E+ S DGT KW + E+ETVYIPEK R TLC+SS Sbjct: 56 RQKLKECAEIVAPEIKVEQRSNDGTIKWAMTVGD------QEVETVYIPEKDRATLCISS 109 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC L C+FC T Q RNL+ EI+ QV A ++G + S R I+ Sbjct: 110 QVGCVLACNFCSTAQQGFNRNLSVSEIIGQVWRAAKIVG----------VTGESGKRPIT 159 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N +N+ ++ + D G + SKRR+T+STSG VP + +G+ I V LA Sbjct: 160 NVVMMGMGEPLLNLNNLIPAMELMLDDFGYALSKRRVTVSTSGVVPALDILGDRIDVSLA 219 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRD 298 ISLHA ++ LR+ ++PIN KY + + + Y S A R + EY++L NDS Sbjct: 220 ISLHAANDTLRSQMMPINDKYNIADFLAGVKRYIAKSKANRGKVYIEYLLLDHFNDSTDQ 279 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L +LK P KINLIPFNP+PG +Y + F++ + GY+ +R RG DI Sbjct: 280 AHELAILLKDTPCKINLIPFNPFPGNDYQKPSNSRVDRFNKVLMEYGYTVTVRKTRGDDI 339 Query: 359 LAACGQL-KSLSKRIPKVPRQEMQ 381 AACGQL + R + ++ +Q Sbjct: 340 DAACGQLVGDVIDRTKRTMKKRLQ 363 >gi|161524634|ref|YP_001579646.1| radical SAM protein [Burkholderia multivorans ATCC 17616] gi|189350610|ref|YP_001946238.1| Cfr family radical SAM enzyme [Burkholderia multivorans ATCC 17616] gi|160342063|gb|ABX15149.1| radical SAM enzyme, Cfr family [Burkholderia multivorans ATCC 17616] gi|189334632|dbj|BAG43702.1| Cfr family radical SAM enzyme [Burkholderia multivorans ATCC 17616] Length = 378 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 147/378 (38%), Positives = 216/378 (57%), Gaps = 12/378 (3%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +L+ E L +G R Q+ +WI+ +F GM+D+++ + Sbjct: 1 MTSETSVNLLDFDAEGLVAYCGSLG----EKPFRAKQLQRWIHQYNAGNFDGMTDLAKSL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L SI P+IV + +S DGTRKWL+ +G +ETV+IPE++RGTLCVSS Sbjct: 57 REKLKGRASITMPDIVSDHVSADGTRKWLV-----DVGNGNAVETVFIPEETRGTLCVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC++ C FC TG Q RNL+ EI+ Q+ +A L G R ++ Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNG---KAERVVT 168 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N++ V ++ + D S+RR+TLSTSG VP + R+G E+ V LA Sbjct: 169 NVVMMGMGEPLLNYNAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALA 228 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++ LR+ LVP+N+K+PL L+ AC+ Y ++ ITFEY ML G+ND+ A Sbjct: 229 VSLHAPNDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHAR 288 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L+ + + +P K NLIPFNP+P + S + I F++ + +G + +R RG DI A Sbjct: 289 ELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQILIDAGVVTTVRKTRGDDIDA 348 Query: 361 ACGQLKSLSKRIPKVPRQ 378 ACGQL K ++ + Sbjct: 349 ACGQLAGAVKDRTRLAER 366 >gi|172060774|ref|YP_001808426.1| radical SAM protein [Burkholderia ambifaria MC40-6] gi|205829677|sp|B1YR46|RLMN_BURA4 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|171993291|gb|ACB64210.1| radical SAM enzyme, Cfr family [Burkholderia ambifaria MC40-6] Length = 379 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 148/383 (38%), Positives = 216/383 (56%), Gaps = 12/383 (3%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +L+ E L +G R Q+ +WI+ DF GM+D+++ + Sbjct: 1 MTSETSVNLLDFDAEGLVAYCGSLG----EKPFRAKQLQRWIHQYNAGDFDGMTDLAKSL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L SI+ PEI + +S DGTRKWL+ +G +ETV+IPE++RGTLCVSS Sbjct: 57 REKLKGRASIVMPEIASDHVSADGTRKWLI-----DVGNGNAVETVFIPEETRGTLCVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC++ C FC TG Q RNL+ EI+ Q+ +A L G R ++ Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNG---KAERVVT 168 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N++ V ++ + D S+RR+TLSTSG VP + R+G E+ V LA Sbjct: 169 NVVMMGMGEPLLNYNAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALA 228 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++ LR+ LVP+N+K+PL L+ AC+ Y ++ ITFEY ML G+ND+ A Sbjct: 229 VSLHAPNDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHAR 288 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L+ + + +P K NLIPFNP+P + S + I F++ + +G + +R RG DI A Sbjct: 289 ELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDA 348 Query: 361 ACGQLKSLSKRIPKVPRQEMQIT 383 ACGQL K ++ + Sbjct: 349 ACGQLAGAVKDRTRLAERTGAAA 371 >gi|167569729|ref|ZP_02362603.1| radical SAM enzyme, Cfr family protein [Burkholderia oklahomensis C6786] Length = 378 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 148/372 (39%), Positives = 214/372 (57%), Gaps = 12/372 (3%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+ + E L +G R Q+ +WI+ DF GM+D+++ +R L Sbjct: 7 VNLLDLDAEGLVAYCGSLG----EKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKG 62 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I P+I+ + +S DGTRKWL+ +G +ETV+IPE++RGTLCVSSQ GC++ Sbjct: 63 RAVIGTPDILSDHVSADGTRKWLI-----NVGSGNAVETVFIPEETRGTLCVSSQAGCAV 117 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG Q RNL+ EI+ Q+ +A L G E R I+N+VMMG Sbjct: 118 NCRFCSTGKQGFSRNLSTGEIVGQLRMAEFALRASLGREPGPNG---RADRVITNVVMMG 174 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N+ V ++ + D S+RR+TLSTSG VP + ++G E+ V LA+SLHA Sbjct: 175 MGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDKLGAELPVALAVSLHAP 234 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ LR+ LVP+NRK+PL L+ AC+ Y ++ ITFEY ML G+ND+ A L+ + Sbjct: 235 NDALRDELVPLNRKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLALT 294 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + +P K NLIPFNP+P + S I F++ + +G + IR RG DI AACGQL Sbjct: 295 RDVPCKFNLIPFNPFPESGLVRSKPDQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLA 354 Query: 367 SLSKRIPKVPRQ 378 K ++ + Sbjct: 355 GAVKDRTRLAER 366 >gi|260221248|emb|CBA29622.1| Ribosomal RNA large subunit methyltransferase N [Curvibacter putative symbiont of Hydra magnipapillata] Length = 466 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 153/371 (41%), Positives = 209/371 (56%), Gaps = 21/371 (5%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+ E L +G + R +Q+++W++ +G F MSD+++ +R L Sbjct: 3 VNLLDFDLEGLAAFCESLG----EKKFRATQLFRWVHQKGASQFDDMSDLAKSLRDKLRG 58 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 H + ++ + IS DGT KWL +G +ETV+IPE RGTLC+SSQ GC++ Sbjct: 59 HAEVRALPVITQHISADGTIKWLF-----DVGNGDAVETVFIPESDRGTLCISSQAGCAV 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG Q RNL EIL Q+ A L G D R ISN+VMMG Sbjct: 114 GCRFCSTGHQGFSRNLKTWEILAQLWFAEHFLRSHLGVSD----------RVISNVVMMG 163 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N+ + +L + D G S+RR+T+STSG VP + R+GE+ V LA+SLHA Sbjct: 164 MGEPLQNYVALVPALKVMLDDHGYGLSRRRVTVSTSGVVPMMDRLGEDCPVALAVSLHAP 223 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 + LR+ LVP+NRKYPL+ L++ACR Y + ITFEY ML G+ND P A L++++ Sbjct: 224 EDSLRDNLVPLNRKYPLKELMEACRRYLAHAPRDFITFEYCMLDGVNDHPEHAKLLLQLV 283 Query: 307 K--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 K G+P K NLIPFNP+P L S + F+ + G + IR RG DI AACGQ Sbjct: 284 KESGVPCKFNLIPFNPFPASGLLRSSNNAVQAFARILVDGGLVTTIRKTRGDDIDAACGQ 343 Query: 365 LKSLSKRIPKV 375 L K V Sbjct: 344 LAGDVKDRTNV 354 >gi|162147642|ref|YP_001602103.1| hypothetical protein GDI_1858 [Gluconacetobacter diazotrophicus PAl 5] gi|209542271|ref|YP_002274500.1| radical SAM enzyme, Cfr family [Gluconacetobacter diazotrophicus PAl 5] gi|161786219|emb|CAP55801.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus PAl 5] gi|209529948|gb|ACI49885.1| radical SAM enzyme, Cfr family [Gluconacetobacter diazotrophicus PAl 5] Length = 404 Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 185/371 (49%), Positives = 256/371 (69%), Gaps = 18/371 (4%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + L+G+ REEL +AL++IG RT Q+W WIY +G+ DF MS I++ ++ L Sbjct: 46 RRELVGLSREELTQALVEIG----EKPFRTKQLWHWIYHQGVTDFARMSSIAKPLQAKLA 101 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK--SRGTLCVSSQVG 123 + F + P+ + S D TRK+L RF E ETVYIP++ RG +C+SSQVG Sbjct: 102 ERFVVGRPDAAMVQTSTDETRKFLFRFRD-----GQEAETVYIPDRREDRGAVCISSQVG 156 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L+C+FC+TGTQKLVRNL A EI+ Q + AR G++P + R +S IV Sbjct: 157 CTLSCTFCHTGTQKLVRNLGAAEIVGQFMAARDSYGEWPSPKG-------DTPRLLSTIV 209 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 +MGMGEPL N++N+ K++ I D G+ S+RRITLSTSG +P + + G E+G+ LAISL Sbjct: 210 LMGMGEPLYNYENIAKAMKIIMDGEGIGLSRRRITLSTSGVIPMMDQCGSELGINLAISL 269 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HAV NDLR+ +VP+NRKYP+E LI ACR YP SNARRITFEY+ML+G+NDS +A L+ Sbjct: 270 HAVRNDLRDEIVPLNRKYPIEDLIAACRRYPTASNARRITFEYIMLRGVNDSEAEARELV 329 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +++ GIPAK+NLIPFNPWPG Y S ++ + F++ + +G++SPIR PRG DILAACG Sbjct: 330 RLIAGIPAKVNLIPFNPWPGSAYKPSTREQLAKFAQIVMDAGFASPIRMPRGRDILAACG 389 Query: 364 QLKSLSKRIPK 374 QL++ S+R + Sbjct: 390 QLRTESERERR 400 >gi|115351803|ref|YP_773642.1| radical SAM protein [Burkholderia ambifaria AMMD] gi|122323090|sp|Q0BEW5|RLMN_BURCM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|115281791|gb|ABI87308.1| 23S rRNA m(2)A-2503 methyltransferase [Burkholderia ambifaria AMMD] Length = 379 Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 148/383 (38%), Positives = 216/383 (56%), Gaps = 12/383 (3%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +L+ E L +G R Q+ +WI+ DF GM+D+++ + Sbjct: 1 MTSETSVNLLDFDAEGLVAYCGSLG----EKPFRAKQLQRWIHQYNAGDFDGMTDLAKSL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L SI+ PEI + +S DGTRKWL+ +G +ETV+IPE++RGTLCVSS Sbjct: 57 REKLKGRASIVMPEIASDHVSTDGTRKWLI-----DVGNGNAVETVFIPEETRGTLCVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC++ C FC TG Q RNL+ EI+ Q+ +A L G R ++ Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNG---KAERVVT 168 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N++ V ++ + D S+RR+TLSTSG VP + R+G E+ V LA Sbjct: 169 NVVMMGMGEPLLNYNAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALA 228 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++ LR+ LVP+N+K+PL L+ AC+ Y ++ ITFEY ML G+ND+ A Sbjct: 229 VSLHAPNDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHAR 288 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L+ + + +P K NLIPFNP+P + S + I F++ + +G + +R RG DI A Sbjct: 289 ELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDA 348 Query: 361 ACGQLKSLSKRIPKVPRQEMQIT 383 ACGQL K ++ + Sbjct: 349 ACGQLAGAVKDRTRLAERTGAAA 371 >gi|167836392|ref|ZP_02463275.1| radical SAM enzyme, Cfr family protein [Burkholderia thailandensis MSMB43] Length = 378 Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 146/372 (39%), Positives = 214/372 (57%), Gaps = 12/372 (3%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+ + E L +G R Q+ +WI+ DF GM+D+++ +R L Sbjct: 7 VNLLDLDAEGLVAYCGSLG----EKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKG 62 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I P+I+ + +S DGTRKWL+ +G +ETV+IPE++RGTLCVSSQ GC++ Sbjct: 63 RAVIGTPDILSDHVSADGTRKWLI-----NVGNGNAVETVFIPEETRGTLCVSSQAGCAV 117 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG Q RNL+ EI+ Q+ +A L G R ++N+VMMG Sbjct: 118 NCRFCSTGKQGFSRNLSTGEIVGQLRMAEFALRASLGRAPGPNG---KAERVVTNVVMMG 174 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N+ V ++ + D S+RR+TLSTSG VP + R+G E+ V LA+SLHA Sbjct: 175 MGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAP 234 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ LR+ LVP+NRK+PL L+ AC+ Y ++ ITFEY ML G+ND+ A L+ + Sbjct: 235 NDALRDELVPLNRKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTQAHARELLALT 294 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + +P K NLIPFNP+P + S + I F++ + +G + IR RG DI AACGQL Sbjct: 295 RDVPCKFNLIPFNPFPESGLVRSKTEQIKRFAQVLIDAGIVTTIRKTRGDDIDAACGQLA 354 Query: 367 SLSKRIPKVPRQ 378 + ++ + Sbjct: 355 GAVRDRTRLAER 366 >gi|121593579|ref|YP_985475.1| radical SAM protein [Acidovorax sp. JS42] gi|205829704|sp|A1W574|RLMN_ACISJ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|120605659|gb|ABM41399.1| 23S rRNA m(2)A-2503 methyltransferase [Acidovorax sp. JS42] Length = 374 Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 150/382 (39%), Positives = 211/382 (55%), Gaps = 25/382 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+ + L ++G R R +Q+++WI+ RG DF MSD+++ +R L Sbjct: 3 TNLLDFDLDGLAAFCERLG----EKRFRATQLFRWIHQRGASDFDQMSDLAKSLREKLRG 58 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + + + E +S DGT KWL +G +ETV+IPE RGTLC+SSQ GC++ Sbjct: 59 CAHVAGLQAISEHVSADGTVKWLF-----DVGDGNAVETVFIPEDDRGTLCISSQAGCAV 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG Q RNLT EIL Q+ A L G R ISN+VMMG Sbjct: 114 GCRFCSTGHQGFSRNLTTGEILAQLWYAEHALRQRRG----------DGERVISNVVMMG 163 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N+ + +L + D G S+RR+T+STSG VP + R+ ++ V LA+SLHA Sbjct: 164 MGEPLQNYAALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLAQDCPVALAVSLHAP 223 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ LR+ LVP+NRKYPL L+ ACR Y + ITFEY ML+G+ND P A LI ++ Sbjct: 224 NDVLRDNLVPLNRKYPLHELLAACRRYLDHAPRDFITFEYCMLEGVNDQPEHARQLIDLV 283 Query: 307 ------KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 G+ K NLIPFNP+P S + F++ + +G + +R RG DI A Sbjct: 284 GRKAADGGVSCKFNLIPFNPFPASGLRRSPPAAVTAFAQLLSDAGIVTTVRKTRGDDIDA 343 Query: 361 ACGQLKSLSKRIPKVPRQEMQI 382 ACGQL K +V + ++ Sbjct: 344 ACGQLAGDVKDRTRVNERMAKL 365 >gi|169634407|ref|YP_001708143.1| hypothetical protein ABSDF3005 [Acinetobacter baumannii SDF] gi|169797246|ref|YP_001715039.1| hypothetical protein ABAYE3266 [Acinetobacter baumannii AYE] gi|184156828|ref|YP_001845167.1| Fe-S-cluster redox protein [Acinetobacter baumannii ACICU] gi|213155960|ref|YP_002318005.1| radical SAM enzyme, Cfr family [Acinetobacter baumannii AB0057] gi|215484687|ref|YP_002326922.1| UPF0063 protein yfgB [Acinetobacter baumannii AB307-0294] gi|239500768|ref|ZP_04660078.1| UPF0063 protein yfgB [Acinetobacter baumannii AB900] gi|260556128|ref|ZP_05828347.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter baumannii ATCC 19606] gi|301346479|ref|ZP_07227220.1| UPF0063 protein yfgB [Acinetobacter baumannii AB056] gi|301510159|ref|ZP_07235396.1| UPF0063 protein yfgB [Acinetobacter baumannii AB058] gi|301594216|ref|ZP_07239224.1| UPF0063 protein yfgB [Acinetobacter baumannii AB059] gi|332851249|ref|ZP_08433322.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii 6013150] gi|332866104|ref|ZP_08436832.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii 6013113] gi|332873243|ref|ZP_08441200.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii 6014059] gi|205829659|sp|B2I3E2|RLMN_ACIBC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829701|sp|B0V4U0|RLMN_ACIBY RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829716|sp|A3M208|RLMN_ACIBT RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807143|sp|B7H072|RLMN_ACIB3 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807144|sp|B7I5G4|RLMN_ACIB5 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807145|sp|B0VKS2|RLMN_ACIBS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|169150173|emb|CAM88067.1| conserved hypothetical protein [Acinetobacter baumannii AYE] gi|169153199|emb|CAP02291.1| conserved hypothetical protein [Acinetobacter baumannii] gi|183208422|gb|ACC55820.1| predicted Fe-S-cluster redox enzyme [Acinetobacter baumannii ACICU] gi|193076307|gb|ABO10952.2| putative Fe-S-cluster redox enzyme [Acinetobacter baumannii ATCC 17978] gi|213055120|gb|ACJ40022.1| radical SAM enzyme, Cfr family [Acinetobacter baumannii AB0057] gi|213987723|gb|ACJ58022.1| UPF0063 protein yfgB [Acinetobacter baumannii AB307-0294] gi|260410183|gb|EEX03482.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter baumannii ATCC 19606] gi|332730129|gb|EGJ61456.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii 6013150] gi|332734850|gb|EGJ65943.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii 6013113] gi|332738755|gb|EGJ69625.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii 6014059] Length = 410 Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 168/388 (43%), Positives = 231/388 (59%), Gaps = 24/388 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+GM R ELE+ IG + R Q+ KWI+ + DF M++IS ++R L Sbjct: 28 EKVNLLGMSRAELEKFFEDIG----EKKFRAGQVMKWIHQYFVTDFAEMTNISGKLRAKL 83 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGTLCVSS 120 Q I PE+V S DGTRKW+ R G +ETV IP + R TLC+SS Sbjct: 84 EQICEIKAPEVVHRHYSKDGTRKWVFRVGE---GSGSLVETVLIPAEDKTGSRKTLCISS 140 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC+L CSFC TG Q R+LT +EI+ Q+ +A + + E R ++ Sbjct: 141 QVGCALDCSFCSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPVAERE--------RSVT 192 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+D V S+ I D SKRR+TLSTSG VP I ++ ++I V LA Sbjct: 193 NVVMMGMGEPLLNYDAVLSSMHIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALA 252 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL----SNARRITFEYVMLKGINDSP 296 ISLHA +++LRN LVPIN+KYPL LI AC+ Y S + +T EYVML+G+ND P Sbjct: 253 ISLHAPNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESARKHVTIEYVMLEGVNDQP 312 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 A L+K+LK +P+KINLIPFNP+P Y S + I++F + + +G+ IR RG Sbjct: 313 EHAQQLLKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGD 372 Query: 357 DILAACGQL-KSLSKRIPKVPRQEMQIT 383 DI AACGQL ++ R + + + ++ Sbjct: 373 DIDAACGQLVGQVADRTRRAEQWQKKVA 400 >gi|294500981|ref|YP_003564681.1| radical SAM enzyme, Cfr family [Bacillus megaterium QM B1551] gi|294350918|gb|ADE71247.1| radical SAM enzyme, Cfr family [Bacillus megaterium QM B1551] Length = 363 Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 125/368 (33%), Positives = 205/368 (55%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K S+ + +LE L++ G + R QI+ W+YV+ + DF MS++S+ +R L Sbjct: 16 QKPSIYSLEMHDLENWLVEHG----DKKFRAKQIFDWLYVKRVTDFDDMSNLSKGLREQL 71 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 F++ + V ++ S DGT K+L IETV + + ++CV++QVGC Sbjct: 72 KDKFALTTLKTVVQQTSGDGTMKFLFELHD-----GYTIETVLMRHEYGNSVCVTTQVGC 126 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + G ++S++V+ Sbjct: 127 RIGCTFCASTLGGLKRNLEAGEIVAQVVKVQKALDE--------------QGERVSSVVI 172 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+D + + L + GL+ R IT+STSG +P I + +E + + AISL Sbjct: 173 MGIGEPFDNYDEMMRFLKTINSDDGLNIGARHITVSTSGIIPKIYKFADEKMQINFAISL 232 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +ND+R+ L+PINR Y L L++A ++Y + RI+FEY + G+ND A L Sbjct: 233 HAPNNDIRSRLMPINRAYKLPDLMEAIKYYTDKTGR-RISFEYGLFGGVNDQVEHAEELA 291 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++K + +NLIP N P +Y+ + ++ I F +K+ G + IR +G DI AACG Sbjct: 292 DLIKDVKCHVNLIPVNYVPERDYVRTPREQIFAFERTLKKRGVNVTIRREQGHDIDAACG 351 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 352 QLRAKERK 359 >gi|326316277|ref|YP_004233949.1| radical SAM enzyme, Cfr family [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373113|gb|ADX45382.1| radical SAM enzyme, Cfr family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 373 Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 150/383 (39%), Positives = 214/383 (55%), Gaps = 25/383 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++L+ + L ++G R R Q+++WI+ RG DF MSD+++ +R L+ Sbjct: 3 KNLLDFDLDGLAAFCEQLG----EKRFRAVQLFRWIHQRGASDFARMSDLAKSLREKLSG 58 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + ++ E +S DGT KWL +G +E+V+IPE RGTLC+SSQ GC++ Sbjct: 59 CAHVAALPVISEHVSADGTVKWLF-----DVGDGNAVESVFIPEDDRGTLCISSQAGCAV 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG Q RNLT+ EI+ Q+ A L G ++ R ISN+VMMG Sbjct: 114 GCRFCSTGHQGFSRNLTSGEIVAQLWFAEHALRARLGTQE----------RVISNVVMMG 163 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N+ + +L D G S+RR+T+STSG VP + R+ ++ V +A+SLHA Sbjct: 164 MGEPLQNYTALVPALRTMLDDHGYGLSRRRLTVSTSGVVPMMDRLSQDCAVAMAVSLHAP 223 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ LR+ LVP+NRKYPL L+DAC Y + ITFEY ML G+ND P A LI ++ Sbjct: 224 NDALRDQLVPLNRKYPLRELLDACTRYLEHAPRDFITFEYCMLDGVNDQPEHARQLIDLV 283 Query: 307 K-----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 + G+ K NLIPFNP+P S+ + F++ + +G + +R RG DI AA Sbjct: 284 RPRGAEGVRCKFNLIPFNPFPASGLHRSNPGQVAAFAKLLSDAGIVTTVRKTRGDDIDAA 343 Query: 362 CGQLKSLSK-RIPKVPRQEMQIT 383 CGQL K R R Q T Sbjct: 344 CGQLAGDVKDRTRAAERMARQRT 366 >gi|170703874|ref|ZP_02894562.1| radical SAM enzyme, Cfr family [Burkholderia ambifaria IOP40-10] gi|171321348|ref|ZP_02910305.1| radical SAM enzyme, Cfr family [Burkholderia ambifaria MEX-5] gi|170131219|gb|EDS99858.1| radical SAM enzyme, Cfr family [Burkholderia ambifaria IOP40-10] gi|171093366|gb|EDT38556.1| radical SAM enzyme, Cfr family [Burkholderia ambifaria MEX-5] Length = 379 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 148/383 (38%), Positives = 215/383 (56%), Gaps = 12/383 (3%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +L+ E L +G R Q+ +WI+ DF GM+D+++ + Sbjct: 1 MTSETSVNLLDFDAEGLVAYCGSLG----EKPFRAKQLQRWIHQYNAGDFDGMTDLAKSL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L SI+ PEI + +S DGTRKWL+ +G +ETV+IPE++RGTLCVSS Sbjct: 57 REKLKGRASIVMPEIASDHVSTDGTRKWLI-----DVGNGNAVETVFIPEETRGTLCVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC++ C FC TG Q RNL+ EI+ Q+ +A L G R ++ Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNG---KAERVVT 168 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+ V ++ + D S+RR+TLSTSG VP + R+G E+ V LA Sbjct: 169 NVVMMGMGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALA 228 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++ LR+ LVP+N+K+PL L+ AC+ Y ++ ITFEY ML G+ND+ A Sbjct: 229 VSLHAPNDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHAR 288 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L+ + + +P K NLIPFNP+P + S + I F++ + +G + +R RG DI A Sbjct: 289 ELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDA 348 Query: 361 ACGQLKSLSKRIPKVPRQEMQIT 383 ACGQL K ++ + Sbjct: 349 ACGQLAGAVKDRTRLAERTGAAA 371 >gi|254358299|ref|ZP_04974572.1| radical SAM enzyme, Cfr family [Burkholderia mallei 2002721280] gi|148027426|gb|EDK85447.1| radical SAM enzyme, Cfr family [Burkholderia mallei 2002721280] Length = 378 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 147/372 (39%), Positives = 214/372 (57%), Gaps = 12/372 (3%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+ + E L +G R Q+ +WI+ DF GM+D+++ +R L Sbjct: 7 VNLLDLDAEGLVAYCGSLG----EKAFRAKQLQRWIHQYNADDFDGMTDLAKSLREKLKG 62 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I P+I+ + +S DGTRKWL+ +G +ETV+IPE++RGTLCVSSQ GC++ Sbjct: 63 RAVIGTPDILSDHVSADGTRKWLI-----NVGNGNAVETVFIPEETRGTLCVSSQAGCAV 117 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG Q RNL+ EI+ Q+ +A L G R I+N+VMMG Sbjct: 118 NCRFCSTGKQGFSRNLSTGEIVGQLRMAEFALRASLGRAPGPNG---KAERVITNVVMMG 174 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N+ V ++ + D S+RR+TLSTSG VP + R+G E+ V LA+SLHA Sbjct: 175 MGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAP 234 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ LR+ LVP+N+K+PL L+ AC+ Y ++ ITFEY ML G+ND+ A L+ + Sbjct: 235 NDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVT 294 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + +P K NLIPFNP+P + S + I F++ + +G + IR RG DI AACGQL Sbjct: 295 RDVPCKFNLIPFNPFPESGLVRSKTEQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLA 354 Query: 367 SLSKRIPKVPRQ 378 K ++ + Sbjct: 355 GAVKDRTRLAER 366 >gi|295706329|ref|YP_003599404.1| radical SAM enzyme, Cfr family [Bacillus megaterium DSM 319] gi|294803988|gb|ADF41054.1| radical SAM enzyme, Cfr family [Bacillus megaterium DSM 319] Length = 363 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 125/368 (33%), Positives = 205/368 (55%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K S+ + +LE L++ G + R QI+ W+YV+ + DF MS++S+ +R L Sbjct: 16 QKPSIYSLEMHDLENWLVEHG----DKKFRAKQIFDWLYVKRVTDFDDMSNLSKGLREQL 71 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 F++ + V ++ S DGT K+L IETV + + ++CV++QVGC Sbjct: 72 KDKFALTTLKTVVQQTSGDGTMKFLFELHD-----GYTIETVLMRHEYGNSVCVTTQVGC 126 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + G ++S++V+ Sbjct: 127 RIGCTFCASTLGGLKRNLEAGEIVAQVVKVQKALDE--------------QGERVSSVVI 172 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+D + + L + GL+ R IT+STSG +P I + +E + + AISL Sbjct: 173 MGIGEPFDNYDEMMRFLKTINSDDGLNIGARHITVSTSGIIPKIYKFADEKMQINFAISL 232 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +ND+R+ L+PINR Y L L++A ++Y + RI+FEY + G+ND A L Sbjct: 233 HAPNNDIRSRLMPINRAYKLPDLMEAIKYYTDKTGR-RISFEYGLFGGVNDQVEHAEELA 291 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++K + +NLIP N P +Y+ + ++ I F +K+ G + IR +G DI AACG Sbjct: 292 DLIKDVKCHVNLIPVNYVPERDYVRTPREQIFAFERTLKKRGVNVTIRREQGHDIDAACG 351 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 352 QLRAKERK 359 >gi|262371647|ref|ZP_06064926.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter junii SH205] gi|262311672|gb|EEY92757.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter junii SH205] Length = 411 Score = 445 bits (1144), Expect = e-123, Method: Composition-based stats. Identities = 170/396 (42%), Positives = 229/396 (57%), Gaps = 32/396 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+GM R ELE ++G + R Q+ KWI+ + DF M++IS ++R L Sbjct: 29 KKVNLLGMSRTELEAFFEELG----EKKFRAGQVMKWIHQYFVTDFAEMTNISGKLREKL 84 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGTLCVSS 120 + I PE+V S DGTRKW+ R G +ETV IP + R TLC+SS Sbjct: 85 EKICEIKAPEVVHRNYSKDGTRKWVFRVGD---GEGSLVETVLIPAEDKTGARKTLCISS 141 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC+L CSFC TG Q R+LT EI+ Q+ +A + + E R ++ Sbjct: 142 QVGCALDCSFCSTGKQGFQRDLTPAEIIGQLWMANYSYMEDVPVAERE--------RTVT 193 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+D V S+ + D SKRR+TLSTSG VP I ++ ++I V LA Sbjct: 194 NVVMMGMGEPLLNYDAVLSSMQLMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDIDVALA 253 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL----SNARRITFEYVMLKGINDSP 296 ISLHA +++LRN LVPIN+KYPL LI AC+ Y S R +T EYVML+G+ND P Sbjct: 254 ISLHAPNDELRNELVPINKKYPLAQLIAACQRYLAKDGNESARRHVTIEYVMLEGVNDQP 313 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 A L+K+LK +P+KINLIPFNP+P Y S + I+ F + + +G+ IR RG Sbjct: 314 EHAQQLLKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIIAFQKTLSDAGFVCTIRQTRGD 373 Query: 357 DILAACGQL---------KSLSKRIPKVPRQEMQIT 383 DI AACGQL ++ + RQE+ T Sbjct: 374 DIDAACGQLVGQVADRTRRAEQWKKKVAQRQEILRT 409 >gi|167719265|ref|ZP_02402501.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei DM98] Length = 378 Score = 445 bits (1144), Expect = e-123, Method: Composition-based stats. Identities = 147/372 (39%), Positives = 214/372 (57%), Gaps = 12/372 (3%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+ + E L +G R Q+ +WI+ DF GM+D+++ +R L Sbjct: 7 VNLLDLDAEGLVAYCGSLG----EKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKG 62 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I P+I+ + +S DGTRKWL+ +G +ETV+IPE++RGTLCVSSQ GC++ Sbjct: 63 RAVIGTPDILSDHVSADGTRKWLI-----NVGNGNAVETVFIPEETRGTLCVSSQAGCAV 117 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG Q RNL+ EI+ Q+ +A L G R I+N+VMMG Sbjct: 118 NCRFCSTGKQGFSRNLSTGEIVGQLRMAEFALRASLGRAPGPNG---KAERVITNVVMMG 174 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N+ V ++ + D S+RR+TLSTSG VP + R+G E+ V LA+SLHA Sbjct: 175 MGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAP 234 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ LR+ LVP+N+K+PL L+ AC+ Y ++ ITFEY ML G+ND+ A L+ + Sbjct: 235 NDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVT 294 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + +P K NLIPFNP+P + S + I F++ + +G + IR RG DI AACGQL Sbjct: 295 RDVPCKFNLIPFNPFPESGLVRSKTEQIKRFAQILIDAGVVTTIRKTRGDDIDAACGQLA 354 Query: 367 SLSKRIPKVPRQ 378 K ++ + Sbjct: 355 GAVKDRTRLAER 366 >gi|167581703|ref|ZP_02374577.1| radical SAM enzyme, Cfr family protein [Burkholderia thailandensis TXDOH] Length = 378 Score = 445 bits (1144), Expect = e-123, Method: Composition-based stats. Identities = 148/372 (39%), Positives = 214/372 (57%), Gaps = 12/372 (3%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+ + E L +G R Q+ +WI+ DF GM+D+++ +R L Sbjct: 7 VNLLDLDAEGLVAYCGGLG----EKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKG 62 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I P+I+ + +S DGTRKWL+ +G +ETV+IPE++RGTLCVSSQ GC++ Sbjct: 63 RAVIGTPDILSDHVSADGTRKWLI-----NVGNGNAVETVFIPEETRGTLCVSSQAGCAV 117 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG Q RNL+ EI+ Q+ +A L G R I+N+VMMG Sbjct: 118 NCRFCSTGKQGFSRNLSTGEIVGQLRMAEFALRASLGRAPGPNG---KAERVITNVVMMG 174 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N+ V ++ + D S+RR+TLSTSG VP + R+G E+ V LA+SLHA Sbjct: 175 MGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAP 234 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ LR+ LVP+N+K+PL L+ AC+ Y ++ ITFEY ML G+ND+ A L+ + Sbjct: 235 NDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLALT 294 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + +P K NLIPFNP+P L S + I F++ + +G + IR RG DI AACGQL Sbjct: 295 RDVPCKFNLIPFNPFPESGLLRSKTEQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLA 354 Query: 367 SLSKRIPKVPRQ 378 K ++ + Sbjct: 355 GAVKDRTRLAER 366 >gi|322506720|gb|ADX02174.1| Fe-S-cluster redox protein [Acinetobacter baumannii 1656-2] gi|323516594|gb|ADX90975.1| Fe-S-cluster redox protein [Acinetobacter baumannii TCDC-AB0715] Length = 406 Score = 445 bits (1144), Expect = e-123, Method: Composition-based stats. Identities = 168/388 (43%), Positives = 231/388 (59%), Gaps = 24/388 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+GM R ELE+ IG + R Q+ KWI+ + DF M++IS ++R L Sbjct: 24 EKVNLLGMSRAELEKFFEDIG----EKKFRAGQVMKWIHQYFVTDFAEMTNISGKLRAKL 79 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGTLCVSS 120 Q I PE+V S DGTRKW+ R G +ETV IP + R TLC+SS Sbjct: 80 EQICEIKAPEVVHRHYSKDGTRKWVFRVGE---GSGSLVETVLIPAEDKTGSRKTLCISS 136 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC+L CSFC TG Q R+LT +EI+ Q+ +A + + E R ++ Sbjct: 137 QVGCALDCSFCSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPVAERE--------RSVT 188 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+D V S+ I D SKRR+TLSTSG VP I ++ ++I V LA Sbjct: 189 NVVMMGMGEPLLNYDAVLSSMHIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALA 248 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL----SNARRITFEYVMLKGINDSP 296 ISLHA +++LRN LVPIN+KYPL LI AC+ Y S + +T EYVML+G+ND P Sbjct: 249 ISLHAPNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESARKHVTIEYVMLEGVNDQP 308 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 A L+K+LK +P+KINLIPFNP+P Y S + I++F + + +G+ IR RG Sbjct: 309 EHAQQLLKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGD 368 Query: 357 DILAACGQL-KSLSKRIPKVPRQEMQIT 383 DI AACGQL ++ R + + + ++ Sbjct: 369 DIDAACGQLVGQVADRTRRAEQWQKKVA 396 >gi|121604771|ref|YP_982100.1| radical SAM protein [Polaromonas naphthalenivorans CJ2] gi|205829800|sp|A1VNF1|RLMN_POLNA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|120593740|gb|ABM37179.1| 23S rRNA m(2)A-2503 methyltransferase [Polaromonas naphthalenivorans CJ2] Length = 382 Score = 445 bits (1144), Expect = e-123, Method: Composition-based stats. Identities = 151/384 (39%), Positives = 212/384 (55%), Gaps = 25/384 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+ E L ++G R R +Q+++WI+ +G DF+ M+D+++ +R L Sbjct: 3 TNLLDFDLEGLAAFCEQLG----QKRFRATQLFRWIHQKGASDFEQMTDLAKSLREKLAV 58 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I +V S DGT KWL +G IETV+IPE RGTLC+SSQ GC++ Sbjct: 59 SAHIQGLNVVSRHESADGTIKWLF-----DVGAGDVIETVFIPETDRGTLCISSQAGCAV 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG Q RNLT EI+ Q+ A L G + R ISN+VMMG Sbjct: 114 GCRFCSTGHQGFSRNLTTGEIISQLWFAEHFLRKHLGRNE----------RVISNVVMMG 163 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N+ + +L + + G S+RR+T+STSG VP I R+ ++ V LA+SLHA Sbjct: 164 MGEPLQNYSQLLPALKVMLNDHGYGLSRRRVTVSTSGVVPMIDRLAKDCPVALAVSLHAP 223 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 + LR+ LVP+N+KYP+ L++AC Y + ITFEY ML G+ND P A L+ ++ Sbjct: 224 QDALRSNLVPLNKKYPIAELLEACTRYQSAAPRDFITFEYCMLDGVNDQPEHARQLVALM 283 Query: 307 K-----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 K G+ K NLIPFNP+P L SD ++ F++ + +G + +R RG DI AA Sbjct: 284 KTHAANGLSCKFNLIPFNPFPASGLLRSDMPQVMAFAKILMDAGIITTVRKTRGDDIDAA 343 Query: 362 CGQLKSLSK-RIPKVPRQEMQITG 384 CGQL + R R Q G Sbjct: 344 CGQLAGDVQDRTSVDQRMAAQRQG 367 >gi|167823864|ref|ZP_02455335.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei 9] gi|226197115|ref|ZP_03792692.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei Pakistan 9] gi|237812551|ref|YP_002897002.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei MSHR346] gi|225930494|gb|EEH26504.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei Pakistan 9] gi|237502725|gb|ACQ95043.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei MSHR346] Length = 378 Score = 445 bits (1144), Expect = e-123, Method: Composition-based stats. Identities = 148/372 (39%), Positives = 215/372 (57%), Gaps = 12/372 (3%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+ + E L +G R Q+ +WI+ DF GM+D+++ +R L Sbjct: 7 VNLLDLDAEGLVAYCGSLG----EKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKG 62 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I P+I+ + +S DGTRKWL+ +G +ETV+IPE++RGTLCVSSQ GC++ Sbjct: 63 RAVIGTPDILSDHVSADGTRKWLI-----NVGNGNAVETVFIPEETRGTLCVSSQAGCAV 117 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG Q RNL+ EI+ Q+ +A L G V R I+N+VMMG Sbjct: 118 NCRFCSTGKQGFSRNLSTGEIVGQLRMAEFALRASLGRAPGPNG---KVERVITNVVMMG 174 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N+ V ++ + D S+RR+TLSTSG VP + R+G E+ V LA+SLHA Sbjct: 175 MGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAP 234 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ LR+ LVP+N+K+PL L+ AC+ Y ++ ITFEY ML G+ND+ A L+ + Sbjct: 235 NDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVT 294 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + +P K NLIPFNP+P + S + I F++ + +G + IR RG DI AACGQL Sbjct: 295 RDVPCKFNLIPFNPFPESGLVRSKTEQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLA 354 Query: 367 SLSKRIPKVPRQ 378 K ++ + Sbjct: 355 GAVKDRTRLAER 366 >gi|299530509|ref|ZP_07043929.1| radical SAM enzyme, Cfr family protein [Comamonas testosteroni S44] gi|298721485|gb|EFI62422.1| radical SAM enzyme, Cfr family protein [Comamonas testosteroni S44] Length = 369 Score = 445 bits (1144), Expect = e-123, Method: Composition-based stats. Identities = 152/380 (40%), Positives = 207/380 (54%), Gaps = 25/380 (6%) Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69 + E L ++G R R +Q+++WI+ RG DF M+D+++ +R L Sbjct: 2 LDFDLEGLTAYCEQLG----EKRFRATQLFRWIHQRGASDFDQMTDLAKSLREKLKSRAH 57 Query: 70 IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129 I +V E +S DGT KWL +G +E+V+IPE RGTLCVSSQ GC++ C Sbjct: 58 ITALPVVTEHVSADGTVKWLF-----DVGDGNAVESVFIPEDDRGTLCVSSQAGCAVGCR 112 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 FC TG Q RNL EIL Q+ A L G ED R ISN+VMMGMGE Sbjct: 113 FCSTGHQGFSRNLNTGEILAQLWYAEHSLRKRFGTED----------RIISNVVMMGMGE 162 Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSND 249 PL N+ + +L + D G S+RR+T+STSG VP + R+ ++ V LA+SLHA ++ Sbjct: 163 PLQNYSALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLSQDCAVALAVSLHAPNDP 222 Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309 LR+ LVP+N+KYP+ L+DAC Y + ITFEY ML G+ND A LI++++ Sbjct: 223 LRDNLVPLNKKYPIAELLDACERYLEFAPRDFITFEYCMLDGVNDQLEHARQLIELVRAR 282 Query: 310 P-----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 K NLIPFNP+P L S + F+ + +G + +R RG DI AACGQ Sbjct: 283 GDGKSWCKFNLIPFNPFPASGLLRSPSARVTEFATLLSNAGIVTTVRKTRGDDIDAACGQ 342 Query: 365 LKSLSK-RIPKVPRQEMQIT 383 L K R R Q T Sbjct: 343 LAGDVKDRTRAAERMAKQRT 362 >gi|260549076|ref|ZP_05823297.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter sp. RUH2624] gi|260407804|gb|EEX01276.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter sp. RUH2624] Length = 410 Score = 445 bits (1144), Expect = e-123, Method: Composition-based stats. Identities = 167/388 (43%), Positives = 231/388 (59%), Gaps = 24/388 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+GM R +LE+ IG + R Q+ KWI+ + DF M++IS ++R L Sbjct: 28 EKVNLLGMSRAQLEKFFEDIG----EKKFRAGQVMKWIHQYFVTDFAEMTNISGKLRAKL 83 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGTLCVSS 120 Q I PE+V S DGTRKW+ R G +ETV IP + R TLC+SS Sbjct: 84 EQICEIKAPEVVHRHYSKDGTRKWVFRVGE---GSGSLVETVLIPAEDKTGSRKTLCISS 140 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC+L CSFC TG Q R+LT +EI+ Q+ +A + + E R ++ Sbjct: 141 QVGCALDCSFCSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPVAERE--------RSVT 192 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+D V S+ I D SKRR+TLSTSG VP I ++ ++I V LA Sbjct: 193 NVVMMGMGEPLLNYDAVLSSMHIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDIDVALA 252 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL----SNARRITFEYVMLKGINDSP 296 ISLHA +++LRN LVPIN+KYPL LI AC+ Y S + +T EYVML+G+ND P Sbjct: 253 ISLHAPNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESARKHVTIEYVMLEGVNDQP 312 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 A L+K+LK +P+KINLIPFNP+P Y S + I++F + + +G+ IR RG Sbjct: 313 EHAQQLLKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGD 372 Query: 357 DILAACGQL-KSLSKRIPKVPRQEMQIT 383 DI AACGQL ++ R + + + ++ Sbjct: 373 DIDAACGQLVGQVADRTRRAEQWQKKVA 400 >gi|83720408|ref|YP_442753.1| radical SAM protein [Burkholderia thailandensis E264] gi|167619819|ref|ZP_02388450.1| radical SAM enzyme, Cfr family protein [Burkholderia thailandensis Bt4] gi|123753780|sp|Q2SWE6|RLMN_BURTA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|83654233|gb|ABC38296.1| radical SAM enzyme, Cfr family [Burkholderia thailandensis E264] Length = 378 Score = 444 bits (1143), Expect = e-123, Method: Composition-based stats. Identities = 148/372 (39%), Positives = 214/372 (57%), Gaps = 12/372 (3%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+ + E L +G R Q+ +WI+ DF GM+D+++ +R L Sbjct: 7 VNLLDLDAEGLVAYCGGLG----EKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKG 62 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I P+I+ + +S DGTRKWL+ +G +ETV+IPE++RGTLCVSSQ GC++ Sbjct: 63 RAVIGTPDILSDHVSADGTRKWLI-----NVGNGNAVETVFIPEETRGTLCVSSQAGCAV 117 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG Q RNL+ EI+ Q+ +A L G R I+N+VMMG Sbjct: 118 NCRFCSTGKQGFSRNLSTGEIVGQLRMAEFALRASLGRAPGPNG---KAERVITNVVMMG 174 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N+ V ++ + D S+RR+TLSTSG VP + R+G E+ V LA+SLHA Sbjct: 175 MGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAP 234 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ LR+ LVP+N+K+PL L+ AC+ Y ++ ITFEY ML G+ND+ A L+ + Sbjct: 235 NDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLALT 294 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + +P K NLIPFNP+P L S + I F++ + +G + IR RG DI AACGQL Sbjct: 295 RDVPCKFNLIPFNPFPESGLLRSKTEQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLA 354 Query: 367 SLSKRIPKVPRQ 378 K ++ + Sbjct: 355 GAVKDRTRLAER 366 >gi|226328008|ref|ZP_03803526.1| hypothetical protein PROPEN_01899 [Proteus penneri ATCC 35198] gi|225203712|gb|EEG86066.1| hypothetical protein PROPEN_01899 [Proteus penneri ATCC 35198] Length = 357 Score = 444 bits (1143), Expect = e-123, Method: Composition-based stats. Identities = 157/368 (42%), Positives = 212/368 (57%), Gaps = 26/368 (7%) Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76 + E + +G R QI KW+Y DF M+DI++ +R+ L + I PE+ Sbjct: 1 MRELFVSMG----EKPFRADQIMKWMYHYCYDDFDQMTDINKVLRNKLKEIAEIKAPEVS 56 Query: 77 DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136 +E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC+L C FC T Q Sbjct: 57 EEQRSTDGTIKWAIKVGD------QQVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQ 110 Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196 RNL EI+ QV A ++G + + R I+N+VMMGMGEPL N +N Sbjct: 111 GFNRNLKVSEIIGQVWRAAKIIG----------SLKETGRRPITNVVMMGMGEPLLNLNN 160 Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVP 256 V +L I D G SKRR+T+STSG VP + ++ + + V LAISLHA ++D+R+ +VP Sbjct: 161 VIPALEIMMDDFGFGLSKRRVTVSTSGVVPALDKLADAVDVALAISLHAPTDDIRDEIVP 220 Query: 257 INRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKIN 314 IN+KY + M ++ R Y SNA R+T EYVML INDS A L + LK P KIN Sbjct: 221 INKKYNIAMFLEGVRRYIAKSNANQGRVTVEYVMLDHINDSTEQAHQLAECLKDTPCKIN 280 Query: 315 LIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS----LSK 370 LIP+NP+PG Y S I FS+ + G+++ +R RG DI AACGQL +K Sbjct: 281 LIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGDVIDRTK 340 Query: 371 RIPKVPRQ 378 R K +Q Sbjct: 341 RTLKKRQQ 348 >gi|53719145|ref|YP_108131.1| hypothetical protein BPSL1511 [Burkholderia pseudomallei K96243] gi|53723553|ref|YP_103007.1| radical SAM protein [Burkholderia mallei ATCC 23344] gi|67639886|ref|ZP_00438715.1| radical SAM enzyme, Cfr family [Burkholderia mallei GB8 horse 4] gi|76811596|ref|YP_333752.1| radical SAM protein [Burkholderia pseudomallei 1710b] gi|121600638|ref|YP_993156.1| radical SAM protein [Burkholderia mallei SAVP1] gi|124383540|ref|YP_001026069.1| radical SAM protein [Burkholderia mallei NCTC 10229] gi|126440813|ref|YP_001059227.1| radical SAM protein [Burkholderia pseudomallei 668] gi|126450494|ref|YP_001080663.1| radical SAM protein [Burkholderia mallei NCTC 10247] gi|126453816|ref|YP_001066494.1| radical SAM protein [Burkholderia pseudomallei 1106a] gi|134277659|ref|ZP_01764374.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 305] gi|167002245|ref|ZP_02268035.1| radical SAM enzyme, Cfr family [Burkholderia mallei PRL-20] gi|167738262|ref|ZP_02411036.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei 14] gi|167815452|ref|ZP_02447132.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei 91] gi|167845403|ref|ZP_02470911.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei B7210] gi|167902394|ref|ZP_02489599.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei NCTC 13177] gi|167910636|ref|ZP_02497727.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei 112] gi|217421523|ref|ZP_03453027.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 576] gi|242316984|ref|ZP_04816000.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1106b] gi|254177964|ref|ZP_04884619.1| radical SAM enzyme, Cfr family [Burkholderia mallei ATCC 10399] gi|254179549|ref|ZP_04886148.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1655] gi|254189060|ref|ZP_04895571.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei Pasteur 52237] gi|254197853|ref|ZP_04904275.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei S13] gi|254199953|ref|ZP_04906319.1| radical SAM enzyme, Cfr family [Burkholderia mallei FMH] gi|254206286|ref|ZP_04912638.1| radical SAM enzyme, Cfr family [Burkholderia mallei JHU] gi|254259301|ref|ZP_04950355.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1710a] gi|254297426|ref|ZP_04964879.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 406e] gi|81379862|sp|Q63UT5|RLMN_BURPS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|81604959|sp|Q62JW2|RLMN_BURMA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123744447|sp|Q3JRQ1|RLMN_BURP1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829680|sp|A3MK77|RLMN_BURM7 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829681|sp|A2S2A0|RLMN_BURM9 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829682|sp|A1V4K3|RLMN_BURMS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829683|sp|A3NVX3|RLMN_BURP0 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829684|sp|A3NA56|RLMN_BURP6 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|52209559|emb|CAH35512.1| conserved hypothetical protein [Burkholderia pseudomallei K96243] gi|52426976|gb|AAU47569.1| radical SAM enzyme, Cfr family [Burkholderia mallei ATCC 23344] gi|76581049|gb|ABA50524.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1710b] gi|121229448|gb|ABM51966.1| radical SAM enzyme, Cfr family [Burkholderia mallei SAVP1] gi|124291560|gb|ABN00829.1| radical SAM enzyme, Cfr family [Burkholderia mallei NCTC 10229] gi|126220306|gb|ABN83812.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 668] gi|126227458|gb|ABN90998.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1106a] gi|126243364|gb|ABO06457.1| radical SAM enzyme, Cfr family [Burkholderia mallei NCTC 10247] gi|134251309|gb|EBA51388.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 305] gi|147749549|gb|EDK56623.1| radical SAM enzyme, Cfr family [Burkholderia mallei FMH] gi|147753729|gb|EDK60794.1| radical SAM enzyme, Cfr family [Burkholderia mallei JHU] gi|157807225|gb|EDO84395.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 406e] gi|157936739|gb|EDO92409.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei Pasteur 52237] gi|160699003|gb|EDP88973.1| radical SAM enzyme, Cfr family [Burkholderia mallei ATCC 10399] gi|169654594|gb|EDS87287.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei S13] gi|184210089|gb|EDU07132.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1655] gi|217395265|gb|EEC35283.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 576] gi|238520497|gb|EEP83956.1| radical SAM enzyme, Cfr family [Burkholderia mallei GB8 horse 4] gi|242140223|gb|EES26625.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1106b] gi|243062062|gb|EES44248.1| radical SAM enzyme, Cfr family [Burkholderia mallei PRL-20] gi|254217990|gb|EET07374.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1710a] Length = 378 Score = 444 bits (1143), Expect = e-123, Method: Composition-based stats. Identities = 147/372 (39%), Positives = 214/372 (57%), Gaps = 12/372 (3%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+ + E L +G R Q+ +WI+ DF GM+D+++ +R L Sbjct: 7 VNLLDLDAEGLVAYCGSLG----EKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKG 62 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I P+I+ + +S DGTRKWL+ +G +ETV+IPE++RGTLCVSSQ GC++ Sbjct: 63 RAVIGTPDILSDHVSADGTRKWLI-----NVGNGNAVETVFIPEETRGTLCVSSQAGCAV 117 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG Q RNL+ EI+ Q+ +A L G R I+N+VMMG Sbjct: 118 NCRFCSTGKQGFSRNLSTGEIVGQLRMAEFALRASLGRAPGPNG---KAERVITNVVMMG 174 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N+ V ++ + D S+RR+TLSTSG VP + R+G E+ V LA+SLHA Sbjct: 175 MGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAP 234 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ LR+ LVP+N+K+PL L+ AC+ Y ++ ITFEY ML G+ND+ A L+ + Sbjct: 235 NDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVT 294 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + +P K NLIPFNP+P + S + I F++ + +G + IR RG DI AACGQL Sbjct: 295 RDVPCKFNLIPFNPFPESGLVRSKTEQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLA 354 Query: 367 SLSKRIPKVPRQ 378 K ++ + Sbjct: 355 GAVKDRTRLAER 366 >gi|302381137|ref|YP_003816960.1| radical SAM protein [Brevundimonas subvibrioides ATCC 15264] gi|302191765|gb|ADK99336.1| radical SAM enzyme, Cfr family [Brevundimonas subvibrioides ATCC 15264] Length = 385 Score = 444 bits (1143), Expect = e-123, Method: Composition-based stats. Identities = 196/380 (51%), Positives = 268/380 (70%), Gaps = 16/380 (4%) Query: 7 ESLIGMMREELEEALLKIGI-PQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 +L G+ R L +AL+ I P +MR SQ+W WI+ G+ DF M++++++ + + Sbjct: 19 VNLSGLTRAGLRQALIDADICPPEKAKMRASQVWGWIHHFGVTDFDAMTNMAKDAKAKMA 78 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR-GTLCVSSQVGC 124 F++ PEIV+ ++S DGTRKWL+R +EIETVYIP+ R G LCVSSQVGC Sbjct: 79 AAFTLARPEIVERQVSADGTRKWLIRTAP-----GIEIETVYIPDVGRAGALCVSSQVGC 133 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC+TGTQ LVRNLTA EI+ QV +AR L ++P P R++SNIV Sbjct: 134 TLNCTFCHTGTQALVRNLTAAEIVAQVQVARDDLNEWPS---------PKEDRRLSNIVF 184 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N D+V ++ I SD+ G++ S+RRIT+STSG VP + +G MLAISLH Sbjct: 185 MGMGEPLYNLDHVSDAIDIISDNEGIALSRRRITVSTSGVVPQLEPLGTRTQAMLAISLH 244 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++ LR++LVP+N+KYPL+ L+D R YPG+SNARR+TFEYVMLKG+NDSP +A L+K Sbjct: 245 ATNDALRDVLVPLNKKYPLQQLMDGIRAYPGISNARRVTFEYVMLKGVNDSPDEARALVK 304 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +++GIPAK+NLIPFNPWPG +Y CSD K I F+ + ++GY+SPIRTPRG DILAACGQ Sbjct: 305 LIEGIPAKVNLIPFNPWPGTDYECSDWKTIERFAAILNKAGYASPIRTPRGRDILAACGQ 364 Query: 365 LKSLSKRIPKVPRQEMQITG 384 LKS S+++ ++ + Sbjct: 365 LKSESEKVRASALRKAEQAA 384 >gi|167893945|ref|ZP_02481347.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei 7894] gi|167918665|ref|ZP_02505756.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei BCC215] Length = 378 Score = 444 bits (1143), Expect = e-123, Method: Composition-based stats. Identities = 147/372 (39%), Positives = 214/372 (57%), Gaps = 12/372 (3%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+ + E L +G R Q+ +WI+ DF GM+D+++ +R L Sbjct: 7 VNLLDLDAEGLVAYCGSLG----EKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKG 62 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I P+I+ + +S DGTRKWL+ +G +ETV+IPE++RGTLCVSSQ GC++ Sbjct: 63 RAVIGTPDILSDHVSADGTRKWLI-----NVGNGNAVETVFIPEETRGTLCVSSQAGCAV 117 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG Q RNL+ EI+ Q+ +A L G R I+N+VMMG Sbjct: 118 NCRFCSTGKQGFSRNLSTGEIVGQLRMAEFALRASLGRAPGPNG---KAERVITNVVMMG 174 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N+ V ++ + D S+RR+TLSTSG VP + R+G E+ V LA+SLHA Sbjct: 175 MGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMERLGAELPVALAVSLHAP 234 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ LR+ LVP+N+K+PL L+ AC+ Y ++ ITFEY ML G+ND+ A L+ + Sbjct: 235 NDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVT 294 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + +P K NLIPFNP+P + S + I F++ + +G + IR RG DI AACGQL Sbjct: 295 RDVPCKFNLIPFNPFPESGLVRSKTEQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLA 354 Query: 367 SLSKRIPKVPRQ 378 K ++ + Sbjct: 355 GAVKDRTRLAER 366 >gi|332305581|ref|YP_004433432.1| radical SAM enzyme, Cfr family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172910|gb|AEE22164.1| radical SAM enzyme, Cfr family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 380 Score = 444 bits (1143), Expect = e-123, Method: Composition-based stats. Identities = 158/379 (41%), Positives = 217/379 (57%), Gaps = 22/379 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ R L E IG R Q+ KWIY G+ DF M+++++ +R L Sbjct: 11 KINLLNFNRAGLREYFSSIG----EKPFRADQVMKWIYQAGVSDFDQMTNLNKALREKLK 66 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + PEI ++ + DGT K+ LR G E+ETV+IP+ R TLCVSSQVGC+ Sbjct: 67 MQCEVKAPEIAYQQGATDGTIKFALRLE-----GGQEVETVWIPDADRATLCVSSQVGCA 121 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC T Q RNL+ EI+ QV + +G + S R I+N+VMM Sbjct: 122 LECTFCSTAQQGFNRNLSVAEIIGQVWRVATTIG----------LSNDSAKRPITNVVMM 171 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N NV ++ + D + SKRR+TLSTSG VP + +G++I V LAISLHA Sbjct: 172 GMGEPLLNLKNVVPAMDLMLDDLAFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISLHA 231 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 + LR+ +VPIN+KYP++ + R Y SNA ++T EYVML GINDS A L Sbjct: 232 PDDTLRDEIVPINKKYPIQEFLAGVRRYLAKSNANQGKVTVEYVMLNGINDSTDQAHALA 291 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+L P+KINLIPFNP+PG Y S I F++ + G +R RG DI AACG Sbjct: 292 KVLADTPSKINLIPFNPYPGSPYSRSSNSRIDRFAKVLSSYGLMVVVRKTRGDDIDAACG 351 Query: 364 QL-KSLSKRIPKVPRQEMQ 381 QL + R ++ +++M+ Sbjct: 352 QLVGDVVDRTKRMLKKQMK 370 >gi|190574019|ref|YP_001971864.1| putative SAM methylase protein [Stenotrophomonas maltophilia K279a] gi|254524361|ref|ZP_05136416.1| radical SAM enzyme, Cfr family [Stenotrophomonas sp. SKA14] gi|205829904|sp|B2FNQ6|RLMN_STRMK RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|190011941|emb|CAQ45562.1| putative SAM methylase protein [Stenotrophomonas maltophilia K279a] gi|219721952|gb|EED40477.1| radical SAM enzyme, Cfr family [Stenotrophomonas sp. SKA14] Length = 401 Score = 444 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 161/382 (42%), Positives = 226/382 (59%), Gaps = 28/382 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K++L+ + R LE+ +++ + R Q+ KWI+ R + DF M+D+ + +R L Sbjct: 22 KQNLLDLDRAGLEKFFVEV---LGEKKFRAHQVMKWIHHRYVTDFDEMTDLGKVLRAKLQ 78 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 H ++ P IV +K S DGT KWLL + G IETVYIP+K+RGTLCVSSQVGC Sbjct: 79 AHAEVLVPNIVFDKPSADGTHKWLLAM---GVDGKNAIETVYIPDKTRGTLCVSSQVGCG 135 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC T TQ RNLT EI+ QV +A LG+ +P R+++N+VMM Sbjct: 136 LNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQMRRLTNVVMM 184 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SLHA Sbjct: 185 GMGEPLMNFDNVVRAMSVMRDDLGYGLANKRVTLSTSGLVPQIDRLSAESDVSLAVSLHA 244 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGL-SNARRITFEYVMLKGINDSPRDALNLIK 304 ++ LR LVP+N+KYP+ L+ +C Y +TFEY ++KGIND P A L + Sbjct: 245 PNDALRETLVPLNKKYPIAELMASCARYLRANKRRESVTFEYTLMKGINDKPEHARELAR 304 Query: 305 ILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 +++ K+NLIPFNP+PG Y S++ I F + + S + +R RG Sbjct: 305 LMRQFDNAVQAKDSGKVNLIPFNPFPGTRYERSEEAHIRAFQKILLDSNVLTMVRRTRGD 364 Query: 357 DILAACGQLKSLSKRIPKVPRQ 378 DI AACGQLK + + RQ Sbjct: 365 DIDAACGQLKGQV--MDRTRRQ 384 >gi|118594986|ref|ZP_01552333.1| hypothetical protein MB2181_04920 [Methylophilales bacterium HTCC2181] gi|118440764|gb|EAV47391.1| hypothetical protein MB2181_04920 [Methylophilales bacterium HTCC2181] Length = 363 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 161/371 (43%), Positives = 219/371 (59%), Gaps = 14/371 (3%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L+ EL E L K G H R Q+ KWIY G DF M+D+++ R L Sbjct: 3 NLLDFNLRELTEYLEKFG----HKPYRAKQLLKWIYQSGEHDFSQMTDLAKSFRQSLQTT 58 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 I P I + +S DGTRKWLL +G IE V+IPE RGTLC+SSQVGC+L Sbjct: 59 SEIATPSIQLDHLSTDGTRKWLL-----DVGAKNGIEAVFIPETDRGTLCISSQVGCALE 113 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C+FC TG Q RNLT+ EI+ Q+ LA +L + ++ R I+N+VMMGM Sbjct: 114 CTFCSTGRQGFNRNLTSGEIVGQLWLANKMLREQANYR-----LLAHEDRIITNVVMMGM 168 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL N+++V +L + D S+RR+TLSTSG +P I ++ ++ V LAISLHA Sbjct: 169 GEPLTNYNHVVHALEMMLDDHVYGLSRRRVTLSTSGLIPAIDKLRDDCPVSLAISLHAPD 228 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 + LR+ +VPIN+KYPL+ L+ AC Y + +TFEYVML+G+NDS A L+K++K Sbjct: 229 DKLRDEIVPINKKYPLQDLMAACIRYIEKAPRDFVTFEYVMLEGVNDSVDQAKALVKLVK 288 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 +P K NLIPFNP+P YLCS + I F + + +G + +R RG DI AACGQL Sbjct: 289 NVPCKFNLIPFNPFPNSGYLCSSRSVINAFKQVLMDAGLVATVRKTRGDDIDAACGQLAG 348 Query: 368 LSKRIPKVPRQ 378 + K + Sbjct: 349 QVQDKTKRTMR 359 >gi|91788473|ref|YP_549425.1| hypothetical protein Bpro_2611 [Polaromonas sp. JS666] gi|123164823|sp|Q12AB5|RLMN_POLSJ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|91697698|gb|ABE44527.1| 23S rRNA m(2)A-2503 methyltransferase [Polaromonas sp. JS666] Length = 382 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 149/383 (38%), Positives = 209/383 (54%), Gaps = 25/383 (6%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L+ E L +G R R +Q+++WI+ +G DF M+D+++ +R L Sbjct: 4 NLLDYDLEGLAAFCEGLG----EKRFRATQLFRWIHQKGASDFGQMTDLARSLREKLAGS 59 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 I P++V S DGT KWL +G IE V+IPE RGTLC+SSQ GC++ Sbjct: 60 AHIQGPKVVSRHDSADGTIKWLF-----DVGAGDVIEAVFIPETDRGTLCISSQAGCAVG 114 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC TG Q RNLT EI+ Q+ A L G ++ R ISN+VMMGM Sbjct: 115 CRFCSTGHQGFSRNLTTGEIVSQLWFAEHFLRQHLGRQE----------RVISNVVMMGM 164 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL N+ + +L + D G S+RR+T+STSG VP I R+ ++ V LA+SLHA Sbjct: 165 GEPLQNYSQLVPALRVMLDDHGYGLSRRRVTVSTSGVVPMIDRLAKDCPVALAVSLHAPQ 224 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 + LR+ LVP+N+KYP+ L+ AC Y + ITFEY ML G+ND P A L+ +++ Sbjct: 225 DALRDSLVPLNKKYPIAELLQACTRYQASAPRDFITFEYCMLDGVNDQPEHARQLVALMQ 284 Query: 308 -----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 G+ K NLIPFNP+P S + F++ + +G + +R RG DI AAC Sbjct: 285 NHSAGGLSCKFNLIPFNPFPASGLKRSAMPQVAAFAKILMDAGIVTTVRKTRGDDIDAAC 344 Query: 363 GQLKSLSKRIPKVPRQ-EMQITG 384 GQL + V R+ Q G Sbjct: 345 GQLAGDVQDRTSVDRRIAAQRQG 367 >gi|241764492|ref|ZP_04762513.1| radical SAM enzyme, Cfr family [Acidovorax delafieldii 2AN] gi|241366076|gb|EER60673.1| radical SAM enzyme, Cfr family [Acidovorax delafieldii 2AN] Length = 373 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 154/384 (40%), Positives = 214/384 (55%), Gaps = 25/384 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + +L+ + + L + ++G R R +Q+++WI+ RG DF MSD++ +R L Sbjct: 2 RTNLLELDLDGLADFCGQLG----EKRFRATQLFRWIHQRGASDFDAMSDLAVALRTKLK 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + ++ E +S DGT KWL +G +E+V+IPE RGTLCVSSQ GC+ Sbjct: 58 GCAFVQALPVISEHVSADGTVKWLF-----DVGDGNAVESVFIPEDDRGTLCVSSQAGCA 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q RNLT EI+ Q+ A L + + R ISN+VMM Sbjct: 113 VGCRFCSTGHQGFSRNLTTGEIVAQLWFAEHALRK----------RLATQSRVISNVVMM 162 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N+ + +L + D G S+RR+T+STSG VP + R+ ++ V LA+SLHA Sbjct: 163 GMGEPLQNYTALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLSQDCPVALAVSLHA 222 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ LR+ LVP+NRKYPLE L+DACR Y + ITFEY ML G+ND A LI + Sbjct: 223 PNDALRDNLVPLNRKYPLEELLDACRRYLEHAPRDFITFEYCMLDGVNDQVEHARQLIAL 282 Query: 306 LK-----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 + I K NLIPFNP+P L S + F++ + +G + +R RG DI A Sbjct: 283 VNPAQGVPIRCKFNLIPFNPFPASGLLRSPSAQVAMFAKVLSDAGIVTTVRKTRGDDIDA 342 Query: 361 ACGQLKSLSK-RIPKVPRQEMQIT 383 ACGQL K R V R Q T Sbjct: 343 ACGQLAGDVKDRTRAVERMAKQRT 366 >gi|149908872|ref|ZP_01897532.1| Hypothetical protein yfgB [Moritella sp. PE36] gi|149808146|gb|EDM68087.1| Hypothetical protein yfgB [Moritella sp. PE36] Length = 371 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 160/383 (41%), Positives = 217/383 (56%), Gaps = 25/383 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+ + + IG R Q+ KWIY G D M+++++++R L Sbjct: 4 KKINLLDLDRKAMRQYFADIG----EKPFRADQVMKWIYHEGCDDINEMTNLNKKLREKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PEI E+ S DGT KW L+ E ETVYIP+ R TLCVSSQVGC Sbjct: 60 LRETVIQAPEISKEQRSADGTIKWALKV------DGQEYETVYIPDGDRATLCVSSQVGC 113 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNL EI+ QV A ++G + R I+N+VM Sbjct: 114 ALECTFCSTAQQGFNRNLRVSEIIGQVWRASQVIG------------FNNKKRAITNVVM 161 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N N+ +L+I D G SKRR+T+STSG VP + ++ + I V LAISLH Sbjct: 162 MGMGEPLLNMTNLVPALNIMLDDYGFGLSKRRVTVSTSGVVPALDKLADSIDVALAISLH 221 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNL 302 A ++ LR+ LVPIN+KY +EML+ + ++Y G SNA R +T EYV+L +NDS A L Sbjct: 222 ASNDTLRDELVPINKKYNIEMLLASVKNYIGKSNANRKKVTIEYVLLDHVNDSTDQAHEL 281 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK P KINLIPFNP+PG +Y I F++ + + IR RG DI AAC Sbjct: 282 AHLLKDTPCKINLIPFNPFPGSDYGKPSNSRIDRFNKVLMEYENTVTIRKTRGDDIDAAC 341 Query: 363 GQLKSLS-KRIPKVPRQEMQITG 384 GQL R + ++ MQ Sbjct: 342 GQLAGDVIDRTKRTLKKRMQGEA 364 >gi|297183711|gb|ADI19836.1| predicted Fe-S cluster redox enzyme [uncultured alpha proteobacterium EB000_37G09] Length = 388 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 190/370 (51%), Positives = 258/370 (69%), Gaps = 18/370 (4%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + SL+ + LE ++ +G+P + R Q+W W++ G+ DF M+D+ + ++ LL+ Sbjct: 24 RRSLLSFEPDALEAEMIALGLP----KFRARQLWGWVWRHGVTDFSDMTDLGKPLQALLS 79 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + F + P + + S DGT KWL++ E ETVYIP+ RGTLC+SSQ+GC+ Sbjct: 80 ERFHVDRPAVSRRQDSSDGTIKWLIKLSD-----GQEAETVYIPDDGRGTLCISSQIGCT 134 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQ+LVRNL+ +EI Q+LLA LGD+P GR+++NIV+M Sbjct: 135 LTCSFCHTGTQRLVRNLSVDEICGQILLAMDELGDWPATRP---------GRRLTNIVLM 185 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N+D V ++ I + G+ SKRRITLSTSG VP I R G ++GV LAISLHA Sbjct: 186 GMGEPLYNYDYVASAMRIIMSNEGVGVSKRRITLSTSGIVPEITRCGNDLGVNLAISLHA 245 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 V ++LRN LVPINRKY L+ LID R YPGLSNARR+T+EYVM+ G+NDS DA L+++ Sbjct: 246 VRDELRNTLVPINRKYNLKTLIDTVRAYPGLSNARRVTWEYVMIDGVNDSEADARALVRL 305 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + GIP+KINLIPFNPWPG +Y CS+ + I F++ + ++GY+SP+RTPRG DILAACGQL Sbjct: 306 ISGIPSKINLIPFNPWPGTDYKCSNDETIDKFAKIVMKAGYASPVRTPRGRDILAACGQL 365 Query: 366 KSLSKRIPKV 375 KS S R+ Sbjct: 366 KSDSVRLRAS 375 >gi|226954474|ref|ZP_03824938.1| radical SAM protein [Acinetobacter sp. ATCC 27244] gi|294651490|ref|ZP_06728803.1| Fe-S-cluster oxidoreductase [Acinetobacter haemolyticus ATCC 19194] gi|226834823|gb|EEH67206.1| radical SAM protein [Acinetobacter sp. ATCC 27244] gi|292822640|gb|EFF81530.1| Fe-S-cluster oxidoreductase [Acinetobacter haemolyticus ATCC 19194] Length = 413 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 169/396 (42%), Positives = 228/396 (57%), Gaps = 32/396 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K +L+GM R ELE+ +G + R Q+ KWI+ + DF M++IS ++R L Sbjct: 31 NKVNLLGMSRAELEKFFEDLG----EKKFRAGQVMKWIHQYFVTDFAEMTNISGKLREKL 86 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGTLCVSS 120 + I PE+V S DGTRKW+ R G +ETV IP + R TLC+SS Sbjct: 87 EKICEIKAPEVVHRNYSKDGTRKWVFRVGD---GEGSLVETVLIPAEDKTGARKTLCISS 143 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC+L CSFC TG Q R+LT EI+ Q+ +A + + E R ++ Sbjct: 144 QVGCALDCSFCSTGKQGFQRDLTPAEIIGQLWMANYSYMEEVPVAERE--------RTVT 195 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N+D V S+ + D SKRR+TLSTSG VP I ++ ++I V LA Sbjct: 196 NVVMMGMGEPLLNYDAVLSSMQLMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDIDVALA 255 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL----SNARRITFEYVMLKGINDSP 296 ISLHA +++LRN LVPIN+KYPL+ LI AC+ Y S R +T EYVML G+ND P Sbjct: 256 ISLHAPNDELRNELVPINKKYPLQQLIAACQRYLAKDGNESARRHVTIEYVMLDGVNDQP 315 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 A L+K+LK +P+KINLIPFNP+P Y S + I+ F + + +G+ IR RG Sbjct: 316 EHAQQLLKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIIAFQKTLSDAGFVCTIRQTRGD 375 Query: 357 DILAACGQL---------KSLSKRIPKVPRQEMQIT 383 DI AACGQL ++ + RQE+ T Sbjct: 376 DIDAACGQLVGQVADRTRRAEQWKKKVAQRQEILRT 411 >gi|302878623|ref|YP_003847187.1| radical SAM enzyme, Cfr family [Gallionella capsiferriformans ES-2] gi|302581412|gb|ADL55423.1| radical SAM enzyme, Cfr family [Gallionella capsiferriformans ES-2] Length = 363 Score = 443 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 158/371 (42%), Positives = 213/371 (57%), Gaps = 22/371 (5%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++L+ + L ++G R Q+ +WIY G DF M+DI+ +R+ L Q Sbjct: 2 QNLLDLDAHALTAYFTEMG----EKPFRAKQLLRWIYQVGESDFAAMTDIAAVLRNKLAQ 57 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I P+IV E++S DGTRKWLL +G +E VYIPE +RGTLC+SSQ GC+L Sbjct: 58 SACITVPDIVREELSDDGTRKWLL-----SVGSGNAVEAVYIPESARGTLCISSQAGCAL 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 CSFC TG Q RNLT EI+ Q+ A LG +SN+VMMG Sbjct: 113 DCSFCSTGKQGFNRNLTVAEIIGQLWWANHQLGKNS-----------EGNWPVSNVVMMG 161 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL NFDN +L + D S+RR+T+STSG VP + R+ EE V LA+SLHA Sbjct: 162 MGEPLLNFDNTVSALRLMLDDQAYGLSRRRVTVSTSGIVPAMDRLREECPVALAVSLHAP 221 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ LR+ LVP+N+KYPL+ L+ AC+ Y + ITFEYVML G+ND+ + A L++++ Sbjct: 222 NDALRDKLVPVNQKYPLKELLGACQRYLEKAPRDFITFEYVMLDGVNDTVQHAHELVRLV 281 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 K P K NLIPFNP+P Y S I F + + ++ + R RG DI AACGQL Sbjct: 282 KDTPCKFNLIPFNPFPLSPYKRSRPDAIQRFRDVLMQADIITTTRKTRGDDIAAACGQLA 341 Query: 367 SLSKRIPKVPR 377 + K R Sbjct: 342 GQV--LDKTRR 350 >gi|218234565|ref|YP_002368665.1| conserved hypothetical protein TIGR00048 [Bacillus cereus B4264] gi|229152063|ref|ZP_04280258.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus m1550] gi|254807154|sp|B7HDY7|RLMN_BACC4 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|218162522|gb|ACK62514.1| conserved hypothetical protein TIGR00048 [Bacillus cereus B4264] gi|228631412|gb|EEK88046.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus m1550] Length = 362 Score = 443 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 126/370 (34%), Positives = 207/370 (55%), Gaps = 25/370 (6%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 +KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++S+ +R Sbjct: 13 EMKKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRD 68 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L+ F I + ++ S DGT K+L + IETV + + ++CV++QV Sbjct: 69 KLSNSFDITTLNTLVKQTSSDGTIKFLFQLYD-----GYSIETVLMRHEYGNSICVTTQV 123 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C+FC + L RNL A EI+ QV+ + L + ++S++ Sbjct: 124 GCRIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSL 169 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 V+MG+GEP N+DN+ L I + GL R +T+STSG +P I + EE + + AI Sbjct: 170 VVMGIGEPFDNYDNLMGFLRIINHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAI 229 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA +++LR+ L+PINR Y L L++A ++Y + RITFEY + G ND A Sbjct: 230 SLHAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRTGR-RITFEYGLFGGENDQVEHAEE 288 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L +LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AA Sbjct: 289 LAALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAA 348 Query: 362 CGQLKSLSKR 371 CGQL++ ++ Sbjct: 349 CGQLRAKERK 358 >gi|213028233|ref|ZP_03342680.1| hypothetical protein Salmonelentericaenterica_40390 [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 356 Score = 443 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 154/356 (43%), Positives = 203/356 (57%), Gaps = 19/356 (5%) Query: 29 RHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKW 88 R Q+ KW+Y +F M+DI++ +R L + I PE+V+E+ S DGT KW Sbjct: 8 GEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKW 67 Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 + +ETVYIPE R TLCVSSQVGC+L C FC T Q RNL EI+ Sbjct: 68 AIAVGD------QRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEII 121 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 QV A ++G + R I+N+VMMGMGEPL N NV ++ I D Sbjct: 122 GQVWRAAKIVG----------AAKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDF 171 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 G SKRR+TLSTSG VP + ++G+ I V LAISLHA ++ +R+ +VPIN+KY +E + Sbjct: 172 GFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKYNIETFLG 231 Query: 269 ACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 A R Y SNA R+T EYVML +ND A L ++LK P KINLIP+NP+PG Y Sbjct: 232 AVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKETPCKINLIPWNPFPGAPY 291 Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS-KRIPKVPRQEMQ 381 S I FS+ + G+++ +R RG DI AACGQL R + R+ MQ Sbjct: 292 GRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKRMQ 347 >gi|152976230|ref|YP_001375747.1| radical SAM protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|205829663|sp|A7GRJ4|RLMN_BACCN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|152024982|gb|ABS22752.1| radical SAM enzyme, Cfr family [Bacillus cytotoxicus NVH 391-98] Length = 362 Score = 443 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 123/368 (33%), Positives = 207/368 (56%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S+ + E++E L + G P + R QI+ W+Y + +++++ M+++S+ +R L Sbjct: 15 KKPSIYSLQLHEMQEWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMTNLSKGLREKL 70 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I + ++ S DGT K+L + IETV + + ++CV++QVGC Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQLYD-----GYSIETVLMRHEYGNSICVTTQVGC 125 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TNERVSSLVV 171 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+D++ L I + G++ R +T+STSG +P I + EE + + AISL Sbjct: 172 MGIGEPFDNYDHLMSFLRIVNHEKGINIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA + +LR+ L+PINR Y L L++A ++Y + R+TFEY + G ND A L Sbjct: 232 HAPNTELRSKLMPINRAYKLPDLMEAIKYYINRTGR-RVTFEYGLFGGENDQVEHAEELA 290 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG Sbjct: 291 QLLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKNRGVNVTIRREQGHDIDAACG 350 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 351 QLRAKERK 358 >gi|239815175|ref|YP_002944085.1| radical SAM enzyme, Cfr family [Variovorax paradoxus S110] gi|239801752|gb|ACS18819.1| radical SAM enzyme, Cfr family [Variovorax paradoxus S110] Length = 382 Score = 443 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 146/380 (38%), Positives = 212/380 (55%), Gaps = 21/380 (5%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + +L+ E L K+G R R +Q+++WI+ RG DF M+D+++ +R Sbjct: 1 MTTANLLEFDLEGLAAFCEKLG----EKRFRATQLFRWIHQRGASDFAQMTDLAKSLREK 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L + ++ + S DGT KWL +G +E V+IPE RGTLCVSSQ G Sbjct: 57 LATTARVEALPVITQHESKDGTIKWLF-----DVGDGNAVEAVFIPEDDRGTLCVSSQAG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C FC TG Q RNL+ EI+ Q+ A L ++ R ISN+V Sbjct: 112 CAVGCRFCSTGHQGFSRNLSTGEIVAQLWFAEHFLRKHLKRDE----------RVISNVV 161 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N+ + +L D S+RR+T+STSG VP I R+G + V +A+SL Sbjct: 162 MMGMGEPLQNYTALVPALRTMLDDNAYGLSRRRVTVSTSGVVPMIDRLGADCPVAMAVSL 221 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA ++ LR+ LVP+NRKYP+ L++AC+ Y + ITFEY ML G+ND P A L+ Sbjct: 222 HAPNDALRDDLVPLNRKYPIAELLEACKRYLVHAPRDFITFEYCMLDGVNDQPEHARQLV 281 Query: 304 KILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 ++++ G+ K NLIPFNP+P L S Q ++ F++ + +G + +R RG DI AA Sbjct: 282 ELVRTHGVSCKFNLIPFNPFPASGLLRSPQPRVLAFAKALSEAGLVTTVRKTRGDDIDAA 341 Query: 362 CGQLKSLSKRIPKVPRQEMQ 381 CGQL K + + Q Sbjct: 342 CGQLAGDVKDRTRAAERMAQ 361 >gi|300113467|ref|YP_003760042.1| radical SAM enzyme, Cfr family [Nitrosococcus watsonii C-113] gi|299539404|gb|ADJ27721.1| radical SAM enzyme, Cfr family [Nitrosococcus watsonii C-113] Length = 372 Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 171/379 (45%), Positives = 225/379 (59%), Gaps = 20/379 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + +L+ + R LE +G R Q+ +WIY R + DF M+D+++ +R L Sbjct: 5 RTNLLNLDRAGLEAFFTCLG----EKPFRARQVLRWIYQRFVTDFSAMTDLNKSLRKRLA 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PEIV + S DGTRKWLLR I G IETV+IPE+ RGTLC+SSQVGC Sbjct: 61 ESAVISLPEIVQQHRSADGTRKWLLR-----IHGNNCIETVFIPEEDRGTLCISSQVGCI 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q RNL EI+ Q+ LA +LG P E R I+N+VMM Sbjct: 116 LDCSFCATGKQGFNRNLAISEIIGQLWLANKILGRTPKGE-----------RIITNVVMM 164 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+NV ++++ D S RR+TLST+G VP I R+ V LA+SLHA Sbjct: 165 GMGEPLANFNNVVAAMNLMLDDFSYGLSWRRVTLSTAGMVPAIDRLRAVCPVSLAVSLHA 224 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ LR+ LVP+N+KYPLE L+ ACR Y R +TFEYVML +NDS A L+++ Sbjct: 225 PTDKLRDELVPLNKKYPLEDLLSACRRYVAGDRRRAVTFEYVMLADVNDSFSHARALLRL 284 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G+PAK+NLIPFNP+PG Y SD + I F E + R G + R RG DI AACGQL Sbjct: 285 LQGLPAKVNLIPFNPFPGSVYRRSDAETIDRFREKLLRGGIMTVTRKTRGDDIAAACGQL 344 Query: 366 KSLSKRIPKVPRQEMQITG 384 + + ++ G Sbjct: 345 AGQVQDRTRRTMDRQRLVG 363 >gi|194365435|ref|YP_002028045.1| radical SAM enzyme, Cfr family [Stenotrophomonas maltophilia R551-3] gi|254807214|sp|B4SSW3|RLMN_STRM5 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|194348239|gb|ACF51362.1| radical SAM enzyme, Cfr family [Stenotrophomonas maltophilia R551-3] Length = 401 Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 160/382 (41%), Positives = 227/382 (59%), Gaps = 28/382 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K++L+ + R LE+ +++ + R Q+ KWI+ R + +F M+D+ + +R L Sbjct: 22 KQNLLDLDRAGLEKFFVEV---LGEKKFRAHQVMKWIHHRYVTEFDEMTDLGKVLRAKLQ 78 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +H ++ P IV +K S DGT KWLL + G IETVYIP+K+RGTLCVSSQVGC Sbjct: 79 EHAEVLVPNIVFDKPSADGTHKWLLAM---GVDGKNAIETVYIPDKTRGTLCVSSQVGCG 135 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC T TQ RNLT EI+ QV +A LG+ +P R+++N+VMM Sbjct: 136 LNCTFCSTATQGFNRNLTTAEIIGQVWIAARHLGN-----------VPHQMRRLTNVVMM 184 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SLHA Sbjct: 185 GMGEPLMNFDNVVRAMSVMRDDLGYGLANKRVTLSTSGLVPQIDRLSTESDVSLAVSLHA 244 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGL-SNARRITFEYVMLKGINDSPRDALNLIK 304 ++ LR LVP+N+KYP+ L+ +C Y +TFEY ++KGIND P A L + Sbjct: 245 PNDALRETLVPLNKKYPIAELMASCARYLRANKRRESVTFEYTLMKGINDKPEHARELAR 304 Query: 305 ILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 +++ K+NLIPFNP+PG Y S++ I F + + S + +R RG Sbjct: 305 LMRQFDNAVQAKDSGKVNLIPFNPFPGTRYERSEEAHIRAFQKILLDSNVLTMVRRTRGD 364 Query: 357 DILAACGQLKSLSKRIPKVPRQ 378 DI AACGQLK + + RQ Sbjct: 365 DIDAACGQLKGQV--MDRTRRQ 384 >gi|205829851|sp|Q82XV4|RLMN_NITEU RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase Length = 379 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 158/383 (41%), Positives = 217/383 (56%), Gaps = 16/383 (4%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+ + EL ++G R Q+ +W++ G DF MSD+++ RH L + Sbjct: 2 INLLDFNKTELVRFCGEMG----EKPYRARQLLRWVHQSGKTDFMEMSDLAKGFRHKLME 57 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + PEIV + + DGTRKWLL G +E V+IPE SRGTLCVSSQVGC+L Sbjct: 58 CAVVQLPEIVSDHTAGDGTRKWLL-----STGAGNAVEMVFIPEPSRGTLCVSSQVGCAL 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSL-----LGDFPGCEDIEGMVIPSVGRKISN 181 CSFC TG Q RNL+ EI+ Q+ A L FP P R ++N Sbjct: 113 ACSFCSTGRQGFNRNLSVAEIIGQLWWANRLLEAGSHDPFPLDTTRVQTDKPETRRPVTN 172 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 +VMMGMGEPL NF+N+ +L + S+RR+T+STSG VP + R+ E V LA+ Sbjct: 173 VVMMGMGEPLANFENLVTALDLMLSDDAYGLSRRRVTVSTSGLVPALDRLRERCPVALAV 232 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++ LR+ LVPIN+KYP+ L+ AC Y + ITFEYVMLKG+NDS A Sbjct: 233 SLHAPNDALRDQLVPINKKYPIRDLLAACERYLPAAPRDFITFEYVMLKGVNDSVALARE 292 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L+++++ +P K+NLIPFN + G Y S + I F + + ++G + +R RG DI AA Sbjct: 293 LVQLVRNVPCKLNLIPFNAFSGSGYERSGAEAIGNFRDVLMQAGIVTTVRKTRGDDIAAA 352 Query: 362 CGQLKSLSKRIPKVPRQEMQITG 384 CGQL + K R TG Sbjct: 353 CGQLAGQVR--DKTRRTSGCGTG 373 >gi|325915372|ref|ZP_08177689.1| 23S rRNA m(2)A-2503 methyltransferase [Xanthomonas vesicatoria ATCC 35937] gi|325538419|gb|EGD10098.1| 23S rRNA m(2)A-2503 methyltransferase [Xanthomonas vesicatoria ATCC 35937] Length = 401 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 162/384 (42%), Positives = 228/384 (59%), Gaps = 28/384 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K++L+ + RE LE + R R Q+ KWI+ R + DF M+D+ + +R Sbjct: 20 MRKQNLLDLDREGLERFFAE---TLGEARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAK 76 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L+QH ++ P +V +K S DGT KWLL G +ETVYIP+KSRGTLCVSSQVG Sbjct: 77 LHQHAEVLVPNVVFDKPSTDGTHKWLLAM---GTDGKNAVETVYIPDKSRGTLCVSSQVG 133 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C L C+FC T TQ RNLT EI+ QV +A LG+ +P R+++N+V Sbjct: 134 CGLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVV 182 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SL Sbjct: 183 MMGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSAESDVSLAVSL 242 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALNL 302 HA ++ LR LVP+N+KYP+ L+++C Y +TFEY ++KGIND P A L Sbjct: 243 HAANDSLRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQL 302 Query: 303 IKILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 ++++ K+NLIPFNP+PG Y S + +I F + + + + +R R Sbjct: 303 ARLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTR 362 Query: 355 GLDILAACGQLKSLSKRIPKVPRQ 378 G DI AACGQLK + + RQ Sbjct: 363 GDDIDAACGQLKGQV--MDRTRRQ 384 >gi|15615069|ref|NP_243372.1| hypothetical protein BH2506 [Bacillus halodurans C-125] gi|81786443|sp|Q9K9Y8|RLMN_BACHD RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|10175126|dbj|BAB06225.1| BH2506 [Bacillus halodurans C-125] Length = 362 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 128/366 (34%), Positives = 203/366 (55%), Gaps = 25/366 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 S+ + EELE L + G P + R +QI++W+Y + ++ FQ M+++S+++R L + Sbjct: 17 PSIYTLQFEELEMWLKEQGEP----KFRATQIFEWLYEKRVKQFQEMTNLSKDLRAKLEK 72 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 HF++ + V ++ S DGT K+L IETV + ++CV++QVGC L Sbjct: 73 HFNLTTLKTVTKQQSSDGTIKFLFELHD-----GYSIETVVMRHNYGNSVCVTTQVGCRL 127 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC + L RNL A EI+ QV+ A+ + + G ++ +IV+MG Sbjct: 128 GCTFCASTLGGLKRNLEAGEIVAQVVEAQRAMDE--------------QGERVGSIVVMG 173 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 +GEP N+ + L + GL+ R IT+STSG VP I + +E + + AISLHA Sbjct: 174 IGEPFDNYQALMPFLKTVNHDKGLNIGARHITVSTSGVVPKIYQFADEGLQINFAISLHA 233 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + +LR+ L+P+NR +PL L+DA R+Y + R+TFEY + G ND A L + Sbjct: 234 PNTELRSKLMPVNRAWPLPKLMDAIRYYIDKTGR-RVTFEYGLFGGENDQVEHAEELADL 292 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +K I +NLIP N P +Y+ + + I F +K G + IR +G DI AACGQL Sbjct: 293 IKDIKCHVNLIPVNYVPERDYVRTPRDQIFAFERTLKERGVNVTIRREQGHDIDAACGQL 352 Query: 366 KSLSKR 371 ++ ++ Sbjct: 353 RAKERK 358 >gi|30263867|ref|NP_846244.1| hypothetical protein BA_4002 [Bacillus anthracis str. Ames] gi|42782956|ref|NP_980203.1| hypothetical protein BCE_3906 [Bacillus cereus ATCC 10987] gi|47529293|ref|YP_020642.1| hypothetical protein GBAA_4002 [Bacillus anthracis str. 'Ames Ancestor'] gi|49186714|ref|YP_029966.1| ribosomal RNA large subunit methyltransferase N [Bacillus anthracis str. Sterne] gi|52141624|ref|YP_085205.1| hypothetical protein BCZK3623 [Bacillus cereus E33L] gi|65321191|ref|ZP_00394150.1| COG0820: Predicted Fe-S-cluster redox enzyme [Bacillus anthracis str. A2012] gi|118479086|ref|YP_896237.1| ribosomal RNA large subunit methyltransferase N [Bacillus thuringiensis str. Al Hakam] gi|167636419|ref|ZP_02394718.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str. A0442] gi|167641154|ref|ZP_02399409.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str. A0193] gi|170688817|ref|ZP_02880020.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str. A0465] gi|170708820|ref|ZP_02899256.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str. A0389] gi|190565819|ref|ZP_03018738.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis Tsiankovskii-I] gi|196035941|ref|ZP_03103343.1| conserved hypothetical protein TIGR00048 [Bacillus cereus W] gi|196038756|ref|ZP_03106064.1| conserved hypothetical protein TIGR00048 [Bacillus cereus NVH0597-99] gi|196047439|ref|ZP_03114651.1| conserved hypothetical protein TIGR00048 [Bacillus cereus 03BB108] gi|206976736|ref|ZP_03237640.1| conserved hypothetical protein TIGR00048 [Bacillus cereus H3081.97] gi|217961284|ref|YP_002339852.1| conserved hypothetical protein TIGR00048 [Bacillus cereus AH187] gi|218904994|ref|YP_002452828.1| conserved hypothetical protein TIGR00048 [Bacillus cereus AH820] gi|222097309|ref|YP_002531366.1| ribosomal RNA large subunit methyltransferase n [Bacillus cereus Q1] gi|225865845|ref|YP_002751223.1| conserved hypothetical protein TIGR00048 [Bacillus cereus 03BB102] gi|228916501|ref|ZP_04080067.1| Radical SAM family enzyme [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228928912|ref|ZP_04091944.1| Radical SAM family enzyme [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935178|ref|ZP_04098005.1| Radical SAM family enzyme [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947583|ref|ZP_04109873.1| Radical SAM family enzyme [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228987007|ref|ZP_04147133.1| Radical SAM family enzyme [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229092907|ref|ZP_04224041.1| Radical SAM family enzyme [Bacillus cereus Rock3-42] gi|229123378|ref|ZP_04252582.1| Radical SAM family enzyme [Bacillus cereus 95/8201] gi|229140510|ref|ZP_04269065.1| Radical SAM family enzyme [Bacillus cereus BDRD-ST26] gi|229157440|ref|ZP_04285518.1| Radical SAM family enzyme [Bacillus cereus ATCC 4342] gi|229186104|ref|ZP_04313273.1| Radical SAM family enzyme [Bacillus cereus BGSC 6E1] gi|229197975|ref|ZP_04324689.1| Radical SAM family enzyme [Bacillus cereus m1293] gi|229603263|ref|YP_002868101.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str. A0248] gi|254683427|ref|ZP_05147287.1| hypothetical protein BantC_06200 [Bacillus anthracis str. CNEVA-9066] gi|254721396|ref|ZP_05183185.1| hypothetical protein BantA1_02905 [Bacillus anthracis str. A1055] gi|254735903|ref|ZP_05193609.1| hypothetical protein BantWNA_12161 [Bacillus anthracis str. Western North America USA6153] gi|254739849|ref|ZP_05197542.1| hypothetical protein BantKB_02319 [Bacillus anthracis str. Kruger B] gi|254756704|ref|ZP_05208733.1| hypothetical protein BantA9_00135 [Bacillus anthracis str. Australia 94] gi|301055355|ref|YP_003793566.1| radical SAM enzyme [Bacillus anthracis CI] gi|81409444|sp|Q732K6|RLMN_BACC1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|81686555|sp|Q636G2|RLMN_BACCZ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|81715534|sp|Q81WH4|RLMN_BACAN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829662|sp|A0RHN7|RLMN_BACAH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807149|sp|C3P635|RLMN_BACAA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807151|sp|B7JJV1|RLMN_BACC0 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807153|sp|C1EP88|RLMN_BACC3 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807155|sp|B7HLJ7|RLMN_BACC7 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807156|sp|B9IVF3|RLMN_BACCQ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|30258511|gb|AAP27730.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str. Ames] gi|42738883|gb|AAS42811.1| conserved hypothetical protein TIGR00048 [Bacillus cereus ATCC 10987] gi|47504441|gb|AAT33117.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str. 'Ames Ancestor'] gi|49180641|gb|AAT56017.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str. Sterne] gi|51975093|gb|AAU16643.1| conserved hypothetical protein; radical SAM family [Bacillus cereus E33L] gi|118418311|gb|ABK86730.1| 23S rRNA m(2)A-2503 methyltransferase [Bacillus thuringiensis str. Al Hakam] gi|167510934|gb|EDR86325.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str. A0193] gi|167528161|gb|EDR90948.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str. A0442] gi|170126305|gb|EDS95196.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str. A0389] gi|170667172|gb|EDT17932.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str. A0465] gi|190562738|gb|EDV16704.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis Tsiankovskii-I] gi|195991590|gb|EDX55556.1| conserved hypothetical protein TIGR00048 [Bacillus cereus W] gi|196021747|gb|EDX60442.1| conserved hypothetical protein TIGR00048 [Bacillus cereus 03BB108] gi|196030479|gb|EDX69078.1| conserved hypothetical protein TIGR00048 [Bacillus cereus NVH0597-99] gi|206745046|gb|EDZ56449.1| conserved hypothetical protein TIGR00048 [Bacillus cereus H3081.97] gi|217063048|gb|ACJ77298.1| conserved hypothetical protein TIGR00048 [Bacillus cereus AH187] gi|218536040|gb|ACK88438.1| conserved hypothetical protein TIGR00048 [Bacillus cereus AH820] gi|221241367|gb|ACM14077.1| conserved hypothetical protein [Bacillus cereus Q1] gi|225788055|gb|ACO28272.1| conserved hypothetical protein TIGR00048 [Bacillus cereus 03BB102] gi|228585454|gb|EEK43558.1| Radical SAM family enzyme [Bacillus cereus m1293] gi|228597280|gb|EEK54931.1| Radical SAM family enzyme [Bacillus cereus BGSC 6E1] gi|228626167|gb|EEK82916.1| Radical SAM family enzyme [Bacillus cereus ATCC 4342] gi|228643071|gb|EEK99347.1| Radical SAM family enzyme [Bacillus cereus BDRD-ST26] gi|228660154|gb|EEL15790.1| Radical SAM family enzyme [Bacillus cereus 95/8201] gi|228690529|gb|EEL44312.1| Radical SAM family enzyme [Bacillus cereus Rock3-42] gi|228772785|gb|EEM21225.1| Radical SAM family enzyme [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228812103|gb|EEM58434.1| Radical SAM family enzyme [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824543|gb|EEM70348.1| Radical SAM family enzyme [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830719|gb|EEM76324.1| Radical SAM family enzyme [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843080|gb|EEM88162.1| Radical SAM family enzyme [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229267671|gb|ACQ49308.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str. A0248] gi|300377524|gb|ADK06428.1| radical SAM enzyme [Bacillus cereus biovar anthracis str. CI] gi|324327762|gb|ADY23022.1| ribosomal RNA large subunit methyltransferase N [Bacillus thuringiensis serovar finitimus YBT-020] Length = 362 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 126/368 (34%), Positives = 206/368 (55%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++S+ +R L Sbjct: 15 KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLREKL 70 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I + ++ S DGT K+L + IETV + + ++CV++QVGC Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQLYD-----GYSIETVLMRHEYGNSICVTTQVGC 125 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------SEERVSSLVV 171 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+DN+ L I + GL R +T+STSG +P I + EE + + AISL Sbjct: 172 MGIGEPFDNYDNLMGFLRIINHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++LR+ L+PINR Y L L++A ++Y + RITFEY + G ND A L Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRTGR-RITFEYGLFGGENDQVEHAEELA 290 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 351 QLRAKERK 358 >gi|325981894|ref|YP_004294296.1| ribosomal RNA large subunit methyltransferase N [Nitrosomonas sp. AL212] gi|325531413|gb|ADZ26134.1| Ribosomal RNA large subunit methyltransferase N [Nitrosomonas sp. AL212] Length = 366 Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 159/379 (41%), Positives = 220/379 (58%), Gaps = 19/379 (5%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+ + L + +IG R Q+ +WI+ GI DF MSD+++ +R L Sbjct: 3 VNLLNYDNKSLVDFCTEIG----EKPFRARQLLRWIHQFGIADFDLMSDLAKGLREKLAT 58 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I P I+ + ++ DGTRKWLL +G IETV+IPE SRGTLC+SSQVGC+L Sbjct: 59 QAVIELPTIMSDYVAADGTRKWLL-----SVGAGNGIETVFIPEISRGTLCISSQVGCAL 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC TG Q RNLT EI+ Q+ +A + E R ++N+VMMG Sbjct: 114 ACTFCSTGKQGFNRNLTVAEIIGQLWIANKM------LETCGDDTKLQTKRAVTNVVMMG 167 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL NF+NV +L + D S+RR+T+STSG VP I R+ E V LA+SLHA Sbjct: 168 MGEPLANFENVVTALDLMLDDHAYGLSRRRVTVSTSGLVPAIDRLRERCPVALAVSLHAP 227 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ LR+ LVPIN+KYP++ L+ AC+ Y + ITFEYVML GINDS A L+K++ Sbjct: 228 NDTLRDQLVPINKKYPIKELLAACQRYLSAAPRDFITFEYVMLDGINDSVAHACELVKLV 287 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + IP K NLIPFN + Y S + I F + + +G + +R RG DI AACGQL Sbjct: 288 QDIPCKFNLIPFNSFSDSGYKRSSTEAIRVFRDVLVHAGLITTVRKTRGDDIAAACGQLA 347 Query: 367 SLSK----RIPKVPRQEMQ 381 K R+ ++ + +Q Sbjct: 348 GQVKDKTHRLTRLKIETIQ 366 >gi|165872311|ref|ZP_02216948.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str. A0488] gi|227813228|ref|YP_002813237.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str. CDC 684] gi|254751039|ref|ZP_05203078.1| hypothetical protein BantV_01167 [Bacillus anthracis str. Vollum] gi|254807150|sp|C3L763|RLMN_BACAC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|164711987|gb|EDR17527.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str. A0488] gi|227006974|gb|ACP16717.1| conserved hypothetical protein TIGR00048 [Bacillus anthracis str. CDC 684] Length = 362 Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 126/368 (34%), Positives = 206/368 (55%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++S+ +R L Sbjct: 15 KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLREKL 70 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I + ++ S DGT K+L + IETV + + ++CV++QVGC Sbjct: 71 SNSFDITTLHTLVKQTSSDGTIKFLFQLYD-----GYSIETVLMRHEYGNSICVTTQVGC 125 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------SEERVSSLVV 171 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+DN+ L I + GL R +T+STSG +P I + EE + + AISL Sbjct: 172 MGIGEPFDNYDNLMGFLRIINHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++LR+ L+PINR Y L L++A ++Y + RITFEY + G ND A L Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRTGR-RITFEYGLFGGENDQVEHAEELA 290 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 351 QLRAKERK 358 >gi|258619955|ref|ZP_05714995.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|258627187|ref|ZP_05721975.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258580489|gb|EEW05450.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258587688|gb|EEW12397.1| conserved hypothetical protein [Vibrio mimicus VM573] Length = 396 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 146/386 (37%), Positives = 209/386 (54%), Gaps = 27/386 (6%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 +K +L+ R+ L + R Q+ KWIY G DF M++I++++R Sbjct: 25 TTEKINLLDFDRKGLRTFFAE---ELGEKAFRAEQVMKWIYHFGCDDFDQMNNINKQLRE 81 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L I P + + + S DGT KW +R ++ETVYIPE+ R TLCVSSQV Sbjct: 82 KLKAKCEIRAPYVSEAQHSADGTIKWAMRVGD------QDVETVYIPEEDRATLCVSSQV 135 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L C FC T Q RNL EI+ QV A +G + + R I+N+ Sbjct: 136 GCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAREIG----------LEKETGRRPITNV 185 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ +I V LAIS Sbjct: 186 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQIDVALAIS 245 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300 LHA +++LR+ ++PIN ++ ++ + R Y SNA R +T EYV+L +ND A Sbjct: 246 LHAPNDELRSQIMPINDRWNIQEFLATVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAH 305 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L +++KG P KINLIPFNP+PG Y I F + + + ++ IR RG DI A Sbjct: 306 ELAELMKGTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDA 365 Query: 361 ACGQL------KSLSKRIPKVPRQEM 380 ACGQL ++ + + Q + Sbjct: 366 ACGQLVGDVIDRTKRTKAKQFAEQAI 391 >gi|260773387|ref|ZP_05882303.1| ribosomal RNA large subunit methyltransferase N [Vibrio metschnikovii CIP 69.14] gi|260612526|gb|EEX37729.1| ribosomal RNA large subunit methyltransferase N [Vibrio metschnikovii CIP 69.14] Length = 373 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 149/386 (38%), Positives = 212/386 (54%), Gaps = 27/386 (6%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 +K +L+ R+ L + R QI KWIY G DF+ M++I++ +R Sbjct: 2 TTEKVNLLDFDRKGLRTYFAE---ELGEKAFRADQIMKWIYHFGCDDFEKMTNINKNLRE 58 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L H I P + D + S DGT KW +R ++ETVYIPE+ R TLCVSSQV Sbjct: 59 KLQTHCEIRAPYVSDAQYSSDGTIKWAMRVGD------QDVETVYIPEEDRATLCVSSQV 112 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L C FC T Q RNL EI+ QV A +G + + R I+N+ Sbjct: 113 GCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAREIG----------LEKETGRRPITNV 162 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL N N+ +L + D +G SKRR+T+STSG V + ++ +I V LAIS Sbjct: 163 VMMGMGEPLLNMKNLIPALELMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGQIDVALAIS 222 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300 LHA ++ LR+ ++PIN ++ ++ + + R Y SNA R +T EYV+L +ND A Sbjct: 223 LHAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAH 282 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L +++KG P KINLIPFNP+PG Y I F + + + ++ IR RG DI A Sbjct: 283 ELAQLMKGTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDA 342 Query: 361 ACGQL------KSLSKRIPKVPRQEM 380 ACGQL ++ ++ + P Q + Sbjct: 343 ACGQLVGDVIDRTKRTKLKQQPEQII 368 >gi|49481621|ref|YP_037925.1| ribosomal RNA large subunit methyltransferase N [Bacillus thuringiensis serovar konkukian str. 97-27] gi|81395090|sp|Q6HEV1|RLMN_BACHK RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|49333177|gb|AAT63823.1| conserved hypothetical protein, radical SAM family [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 362 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 126/368 (34%), Positives = 206/368 (55%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++S+ +R L Sbjct: 15 KKTSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLREKL 70 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I + ++ S DGT K+L + IETV + + ++CV++QVGC Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQLYD-----GYSIETVLMRHEYGNSICVTTQVGC 125 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------SEERVSSLVV 171 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+DN+ L I + GL R +T+STSG +P I + EE + + AISL Sbjct: 172 MGIGEPFDNYDNLMGFLRIINHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++LR+ L+PINR Y L L++A ++Y + RITFEY + G ND A L Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRTGR-RITFEYGLFGGENDQVEHAEELA 290 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 351 QLRAKERK 358 >gi|53802993|ref|YP_115280.1| hypothetical protein MCA2887 [Methylococcus capsulatus str. Bath] gi|81680833|sp|Q603C0|RLMN_METCA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|53756754|gb|AAU91045.1| conserved hypothetical protein TIGR00048 [Methylococcus capsulatus str. Bath] Length = 366 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 163/377 (43%), Positives = 228/377 (60%), Gaps = 26/377 (6%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 + + +L+ + RE +E +++G R SQ+ +WI+ RG+ DF M+++S+ +R Sbjct: 9 DTETRVNLLDLDREGMEAFFVRLG----EKPFRASQLLQWIHQRGVTDFGLMTNLSKTLR 64 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L I PE+V E+ S DGTRKW+L+ + +ETV IP++ R TLCVSSQ Sbjct: 65 SRLEAVSEIRPPELVLEQRSADGTRKWVLQ-----VDAVNRVETVLIPDEGRNTLCVSSQ 119 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGCSL CSFC T Q RNLT EI+ Q+ +A+ L + ++ISN Sbjct: 120 VGCSLECSFCSTARQGFNRNLTTAEIIGQLWVAQHRLDE---------------EQRISN 164 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 +V+MGMGEPL NF NV + + D SKRR+TLSTSG VP + R+ E + LA+ Sbjct: 165 VVLMGMGEPLLNFGNVVAATRLMMDDFAYGLSKRRVTLSTSGIVPALDRLAEVSDISLAV 224 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA + LRN LVPINRKYP+ L+ AC+ Y G N R++TFEYVML G+ND P A Sbjct: 225 SLHAPDDTLRNELVPINRKYPIRELLAACKRYVGTENRRKVTFEYVMLDGVNDRPEHARA 284 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L+++L +P+K+NLIPFNP+P Y CS + I F++ ++ +G + R RG DI AA Sbjct: 285 LVRLLSHVPSKVNLIPFNPFPNSAYRCSHPETIARFAQTLQDAGLITTTRKTRGRDIDAA 344 Query: 362 CGQLKSLSKRIPKVPRQ 378 CGQL + K + RQ Sbjct: 345 CGQL--VGKVNDRSRRQ 359 >gi|30021952|ref|NP_833583.1| radical SAM protein [Bacillus cereus ATCC 14579] gi|206971090|ref|ZP_03232041.1| conserved hypothetical protein TIGR00048 [Bacillus cereus AH1134] gi|228960080|ref|ZP_04121744.1| Ribosomal RNA large subunit methyltransferase N [Bacillus thuringiensis serovar pakistani str. T13001] gi|229047551|ref|ZP_04193141.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus AH676] gi|229111335|ref|ZP_04240888.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus Rock1-15] gi|229129140|ref|ZP_04258113.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus BDRD-Cer4] gi|229146435|ref|ZP_04274806.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus BDRD-ST24] gi|81580507|sp|Q819U3|RLMN_BACCR RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|29897508|gb|AAP10784.1| Radical SAM family enzyme [Bacillus cereus ATCC 14579] gi|206733862|gb|EDZ51033.1| conserved hypothetical protein TIGR00048 [Bacillus cereus AH1134] gi|228637068|gb|EEK93527.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus BDRD-ST24] gi|228654377|gb|EEL10242.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus BDRD-Cer4] gi|228672111|gb|EEL27402.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus Rock1-15] gi|228723798|gb|EEL75153.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus AH676] gi|228799596|gb|EEM46549.1| Ribosomal RNA large subunit methyltransferase N [Bacillus thuringiensis serovar pakistani str. T13001] Length = 362 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 126/368 (34%), Positives = 207/368 (56%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++S+ +R L Sbjct: 15 KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I + + ++ S DGT K+L + IETV + + ++CV++QVGC Sbjct: 71 SNSFDITTLKTLVKQTSSDGTIKFLFQLYD-----GYSIETVLMRHEYGNSICVTTQVGC 125 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+DN+ L I + GL R +T+STSG +P I + EE + + AISL Sbjct: 172 MGIGEPFDNYDNLMGFLRIINHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++LR+ L+PINR Y L L++A ++Y + RITFEY + G ND A L Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRTGR-RITFEYGLFGGENDQVEHAEELA 290 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 351 QLRAKERK 358 >gi|319794361|ref|YP_004156001.1| radical SAM protein [Variovorax paradoxus EPS] gi|315596824|gb|ADU37890.1| radical SAM enzyme, Cfr family [Variovorax paradoxus EPS] Length = 384 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 145/380 (38%), Positives = 210/380 (55%), Gaps = 21/380 (5%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + +L+ E L K+G R R +Q+++WI+ RG DF M+D+++ +R Sbjct: 1 MTTANLLDFDLEGLAAFCEKLG----EKRFRATQLFRWIHQRGASDFTQMTDLAKSLREK 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L + ++ + S DGT KWL +G +E V+IPE RGTLCVSSQ G Sbjct: 57 LATTARVEALPVLTQHESKDGTIKWLF-----DVGDGNAVEAVFIPEDDRGTLCVSSQAG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C FC TG Q RNL+ EI+ Q+ A L ++ R ISN+V Sbjct: 112 CAVGCRFCSTGHQGFSRNLSTGEIVAQLWFAEHFLRKHLKRDE----------RVISNVV 161 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N+ + +L D S+RR+T+STSG VP I R+G + V +A+SL Sbjct: 162 MMGMGEPLQNYTALVPALRTMLDDNAYGLSRRRVTVSTSGVVPMIDRLGTDCAVAMAVSL 221 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA ++ LR+ LVP+NRKYP+ L++AC+ Y + ITFEY ML G+ND P A L+ Sbjct: 222 HAPNDALRDDLVPLNRKYPIAELLEACKRYLEHAPRDFITFEYCMLDGVNDQPEHARQLV 281 Query: 304 KILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 ++++ + K NLIPFNP+P L S Q ++ F+ + +G + +R RG DI AA Sbjct: 282 ELVRKHDVSCKFNLIPFNPFPASGLLRSPQPRVLAFARTLSEAGLVTTVRKTRGDDIDAA 341 Query: 362 CGQLKSLSKRIPKVPRQEMQ 381 CGQL K + + Q Sbjct: 342 CGQLAGDVKDRTRAAERMAQ 361 >gi|261856771|ref|YP_003264054.1| radical SAM enzyme, Cfr family [Halothiobacillus neapolitanus c2] gi|261837240|gb|ACX97007.1| radical SAM enzyme, Cfr family [Halothiobacillus neapolitanus c2] Length = 392 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 155/377 (41%), Positives = 220/377 (58%), Gaps = 24/377 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K +L+G+ ++L++ +++G R +Q+ KW++ R + F M+D+++ +R L Sbjct: 21 NKINLLGLTPQQLKDWFVELG----EKPFRATQLLKWVHQRRVDSFDDMTDLAKSLRDKL 76 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I P I ++ S DGTRK+LL G +E VYIPE R TLC+SSQVGC Sbjct: 77 RDLACIRAPAIRLDQQSSDGTRKFLLEL-----DGGGSVEMVYIPEDDRATLCISSQVGC 131 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 SL C+FC TG Q RNLT EI+ Q+ LA ++ + R ISN+V Sbjct: 132 SLACTFCSTGRQGFNRNLTTAEIVGQLWLAERMID-----------RAVNHNRAISNVVF 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NF++V + +I D S+RR+T+STSG +P I R+ E + V LAISLH Sbjct: 181 MGMGEPLLNFESVVDAATIMLDDNAYGLSRRRVTISTSGIIPAIDRLAERLPVALAISLH 240 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++ LR++LVPIN+KYPL+ L+ AC Y + I +EYVML+G+ND P A +I+ Sbjct: 241 APNDALRDVLVPINQKYPLDDLMAACDRYAKVVPHGAIIYEYVMLEGVNDEPVHAEEMIR 300 Query: 305 IL--KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +L + K+NLIPFNP+P Y S + I F +K +G ++ R RG DI AAC Sbjct: 301 LLAPRKDAVKVNLIPFNPFPSSGYKRSSRNRIERFRATLKAAGINTVPRKTRGDDIDAAC 360 Query: 363 GQLKSLSKRIPKVPRQE 379 GQL + K RQE Sbjct: 361 GQLVGEFE--DKARRQE 375 >gi|149926356|ref|ZP_01914617.1| hypothetical protein LMED105_13193 [Limnobacter sp. MED105] gi|149824719|gb|EDM83933.1| hypothetical protein LMED105_13193 [Limnobacter sp. MED105] Length = 379 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 154/371 (41%), Positives = 215/371 (57%), Gaps = 16/371 (4%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L+ EL + +G R Q+ KWI+ G+ +F M+D+++ R LN Sbjct: 7 NLLDYSVPELIQWCGNLG----EKPFRAKQLAKWIHQSGMDNFDSMTDLAKSFRQNLNSR 62 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 I P I+ + +S DGTRKWL +G +ETV+IPE+ RGTLCVSSQ GC++ Sbjct: 63 ACIKAPSIISDNVSKDGTRKWLF-----DVGNGDAVETVFIPEERRGTLCVSSQAGCAVN 117 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC TG Q RNL+ EI+ Q+ A LL + G + + R ++N+VMMGM Sbjct: 118 CRFCSTGKQGFSRNLSTAEIVAQLWKANVLLRE-------AGDRVYAQERPVTNVVMMGM 170 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL N+D + +L + D S+RR+T+STSG VP + R+ ++ V LA+SLHA + Sbjct: 171 GEPLLNYDALVPALQLMLDDTAYGLSRRRVTVSTSGVVPFMDRLSQDCPVALAVSLHAPN 230 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 + LR+ LVP+N+KYPL L+DAC Y + ITFEYVML G+ND P A L++I K Sbjct: 231 DALRDHLVPLNKKYPLRELLDACLRYLKFAPRDFITFEYVMLDGVNDKPEHAQQLLEIAK 290 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 +P K NLIPFNP+P L S I TF + + +G + +R RG DI AACGQL Sbjct: 291 IVPCKFNLIPFNPFPESGLLKSTSPAIKTFVDILGGAGVVTTVRKTRGDDIDAACGQLAG 350 Query: 368 LSKRIPKVPRQ 378 + KV + Sbjct: 351 EVRDRTKVKER 361 >gi|254449223|ref|ZP_05062672.1| radical SAM enzyme, Cfr family [gamma proteobacterium HTCC5015] gi|198261200|gb|EDY85496.1| radical SAM enzyme, Cfr family [gamma proteobacterium HTCC5015] Length = 380 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 151/381 (39%), Positives = 215/381 (56%), Gaps = 22/381 (5%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M+ K +L+ + E+L+ G R +Q+ KWI+ R + DF M+D+S+ + Sbjct: 1 MSDTAKINLLDLNFEQLKAFFSDRG----EKAFRATQVTKWIHHRCVDDFDEMTDLSKSL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG------PVEIETVYIPEKSRG 114 R +L + + PE+V E+ S DGTRKW+L + ++E V+IPE RG Sbjct: 57 REMLKRDAEVRAPEVVLEQKSADGTRKWVLDLDNQATASRTTPAIGNKVEMVFIPEDGRG 116 Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 TLCVSSQVGCSL CSFC T Q RNL+ EI+ QV A+ L + Sbjct: 117 TLCVSSQVGCSLDCSFCSTARQGFSRNLSVAEIIGQVWQAKRTLLEL------------G 164 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234 +++N+VMMGMGEPL N+ V ++++ D MG SKR++T+STSG VP + R+ E+ Sbjct: 165 EDERLTNVVMMGMGEPLMNYRPVIQAVNTMMDDMGYGLSKRKVTISTSGMVPAMERMIED 224 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 LA+SLHA ++ LR+ LVPIN+K+PL L+ C + R +T+EYVML+G+ND Sbjct: 225 TQCALAVSLHAPNDSLRDELVPINKKHPLNELMGVCDRWVEAGPKRNVTYEYVMLEGVND 284 Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 + A L K+LK AK+NLIPFNP+P Y S + I F + G + R R Sbjct: 285 NREQAHELGKLLKAREAKVNLIPFNPFPNSGYKRSSEARIKEFKRILNSYGVFTFPRKTR 344 Query: 355 GLDILAACGQLKSLSKRIPKV 375 G DI AACGQL + + Sbjct: 345 GDDIDAACGQLVGKVQDRSRR 365 >gi|114320405|ref|YP_742088.1| radical SAM protein [Alkalilimnicola ehrlichii MLHE-1] gi|122941195|sp|Q0A989|RLMN_ALHEH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|114226799|gb|ABI56598.1| 23S rRNA m(2)A-2503 methyltransferase [Alkalilimnicola ehrlichii MLHE-1] Length = 360 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 158/381 (41%), Positives = 227/381 (59%), Gaps = 27/381 (7%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L+ + R+ L+ +G R +Q+ KW++ R + F+ M+DIS+ +R L + Sbjct: 2 NLLDLDRQALKRLFADLG----EKPFRATQVLKWVHQRRVTGFEEMTDISKALRARLAER 57 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 ++ PE++ E++S DGTRKWLLR + G IETV+IP+ RGTLCVSSQVGC+L Sbjct: 58 VALRLPEVLAEQVSEDGTRKWLLR-----VDGGQAIETVFIPDSGRGTLCVSSQVGCALD 112 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 CSFC T Q RNL+ EI+ Q +A + G +I+N+V MGM Sbjct: 113 CSFCSTAQQGFNRNLSTAEIIGQYYVAYDQ--------------LTGTGEQITNVVFMGM 158 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL N + V ++ + +D SKR++T+STSG V + R+ E+ V LA+SLHA + Sbjct: 159 GEPLLNLEAVIPAVRLMTDDDAYGLSKRKVTISTSGVVTMLERMREQTDVSLAVSLHAPN 218 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 N LR+ LVPINRK+PLE LI AC Y RRIT+EYVML G+ND A L ++L Sbjct: 219 NALRDELVPINRKHPLERLIPACAAYIADKPHRRITWEYVMLDGVNDQDHHAHELARLLG 278 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 IP+K+NLIPFNP+PG Y CS + I+ F ++ G ++ R RG DI ACGQL Sbjct: 279 DIPSKVNLIPFNPFPGARYRCSPRGRILRFVRILQSHGLTATTRVTRGQDIDGACGQLVG 338 Query: 368 L----SKRIPKVPRQEMQITG 384 ++R ++ ++E++ G Sbjct: 339 KVQDRTRRQQRLVQRELRREG 359 >gi|260771398|ref|ZP_05880323.1| ribosomal RNA large subunit methyltransferase N [Vibrio furnissii CIP 102972] gi|260613524|gb|EEX38718.1| ribosomal RNA large subunit methyltransferase N [Vibrio furnissii CIP 102972] gi|315180979|gb|ADT87893.1| predicted Fe-S-cluster redox enzyme [Vibrio furnissii NCTC 11218] Length = 373 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 145/385 (37%), Positives = 206/385 (53%), Gaps = 22/385 (5%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 +K +L+ R+ L R QI KWIY G DF M++I++++R Sbjct: 2 TTEKVNLLDFDRKGLRAYFAD---ELGEKAFRADQIMKWIYHFGCDDFDKMTNINKKLRE 58 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L + I P + + + S DGT KW +R ++ETVYIPE R TLCVSSQV Sbjct: 59 QLKERCEIRAPYVSEAQHSSDGTIKWAMRVGD------QDVETVYIPEDDRATLCVSSQV 112 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L C FC T Q RNL EI+ QV A +G + + R I+N+ Sbjct: 113 GCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAREIG----------LEKETGRRPITNV 162 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ +I V LAIS Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGQIDVALAIS 222 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300 LHA ++ LR+ ++PIN ++ ++ + + R Y SNA R +T EYV+L +ND A Sbjct: 223 LHAPNDTLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAH 282 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L +++K P KINLIPFNP+PG Y I F + + + ++ +R RG DI A Sbjct: 283 ELAQLMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYDHTVTVRKTRGDDIDA 342 Query: 361 ACGQL-KSLSKRIPKVPRQEMQITG 384 ACGQL + R + ++ Sbjct: 343 ACGQLVGDVIDRTKRTKMKQADENA 367 >gi|113461341|ref|YP_719410.1| ribosomal RNA large subunit methyltransferase N [Haemophilus somnus 129PT] gi|112823384|gb|ABI25473.1| 23S rRNA m(2)A-2503 methyltransferase [Haemophilus somnus 129PT] Length = 365 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 154/373 (41%), Positives = 215/373 (57%), Gaps = 23/373 (6%) Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69 + + R+++ ++G R Q+ KWIY G +F M++I++++R L Sbjct: 1 MNLTRQQMRAFFQELG----EKPFRADQLVKWIYHFGEDNFDHMTNINKKLREKLKTVAE 56 Query: 70 IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129 I PEI E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC+L C+ Sbjct: 57 IKAPEIAVEQRSADGTIKWAMQVGD------QQVETVYIPETDRATLCVSSQVGCALACT 110 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 FC T Q RNLT EI+ QV A ++G+F + R I+N+VMMGMGE Sbjct: 111 FCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVMMGMGE 160 Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSND 249 PL N NV ++ I D SKRR+TLSTSG VP + ++ E I V LAISLHA +++ Sbjct: 161 PLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKLSEMIDVALAISLHAPNDE 220 Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILK 307 LRN +VPIN+KY ++ML+++ Y +SNA ++T EYVML IND A L ++LK Sbjct: 221 LRNEIVPINKKYNIKMLMESVNRYLNVSNANHGKVTIEYVMLDHINDGTEHAHQLAEVLK 280 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 P KINLIP+NP+P Y S I F + + G++ +R RG DI AACGQL Sbjct: 281 NTPCKINLIPWNPFPDAPYAKSSNTRIDRFQKTLMEYGFTVILRKTRGDDIDAACGQLAG 340 Query: 368 LS-KRIPKVPRQE 379 R + +++ Sbjct: 341 DVIDRTKRTAQKK 353 >gi|262165069|ref|ZP_06032806.1| ribosomal RNA large subunit methyltransferase N [Vibrio mimicus VM223] gi|262172172|ref|ZP_06039850.1| ribosomal RNA large subunit methyltransferase N [Vibrio mimicus MB-451] gi|261893248|gb|EEY39234.1| ribosomal RNA large subunit methyltransferase N [Vibrio mimicus MB-451] gi|262024785|gb|EEY43453.1| ribosomal RNA large subunit methyltransferase N [Vibrio mimicus VM223] Length = 373 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 146/386 (37%), Positives = 209/386 (54%), Gaps = 27/386 (6%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 +K +L+ R+ L + R Q+ KWIY G DF M++I++++R Sbjct: 2 TTEKINLLDFDRKGLRTFFAE---ELGEKAFRAEQVMKWIYHFGCDDFDQMNNINKQLRE 58 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L I P + + + S DGT KW +R ++ETVYIPE+ R TLCVSSQV Sbjct: 59 KLKAKCEIRAPYVSEAQHSADGTIKWAMRVGD------QDVETVYIPEEDRATLCVSSQV 112 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L C FC T Q RNL EI+ QV A +G + + R I+N+ Sbjct: 113 GCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAREIG----------LEKETGRRPITNV 162 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ +I V LAIS Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQIDVALAIS 222 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300 LHA +++LR+ ++PIN ++ ++ + R Y SNA R +T EYV+L +ND A Sbjct: 223 LHAPNDELRSQIMPINDRWNIQEFLATVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAH 282 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L +++KG P KINLIPFNP+PG Y I F + + + ++ IR RG DI A Sbjct: 283 ELAELMKGTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDA 342 Query: 361 ACGQL------KSLSKRIPKVPRQEM 380 ACGQL ++ + + Q + Sbjct: 343 ACGQLVGDVIDRTKRTKAKQFAEQAI 368 >gi|15640776|ref|NP_230406.1| hypothetical protein VC0757 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591437|ref|ZP_01678715.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|153817298|ref|ZP_01969965.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|153822713|ref|ZP_01975380.1| conserved hypothetical protein [Vibrio cholerae B33] gi|153824544|ref|ZP_01977211.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|254847894|ref|ZP_05237244.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255744563|ref|ZP_05418514.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholera CIRS 101] gi|262161302|ref|ZP_06030413.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae INDRE 91/1] gi|81623203|sp|Q9KTX3|RLMN_VIBCH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|9655203|gb|AAF93922.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121546714|gb|EAX56891.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|126512214|gb|EAZ74808.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|126519744|gb|EAZ76967.1| conserved hypothetical protein [Vibrio cholerae B33] gi|149741762|gb|EDM55791.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|254843599|gb|EET22013.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255737594|gb|EET92988.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholera CIRS 101] gi|262029052|gb|EEY47705.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae INDRE 91/1] Length = 373 Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats. Identities = 148/380 (38%), Positives = 207/380 (54%), Gaps = 22/380 (5%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 +K +L+ R+ L + R Q+ KWIY G DF M++I++++R Sbjct: 2 TTEKINLLDFDRKGLRTFFAE---ELGEKAFRAEQVMKWIYHFGCDDFDQMNNINKQLRE 58 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L I P + + + S DGT KW +R ++ETVYIPE R TLCVSSQV Sbjct: 59 KLKAKCEIRAPYVSEAQHSADGTIKWAMRVGD------QDVETVYIPEDDRATLCVSSQV 112 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L C FC T Q RNL EI+ QV A +G + + R I+N+ Sbjct: 113 GCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAREIG----------LEKETGRRPITNV 162 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ +I V LAIS Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQIDVALAIS 222 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300 LHA ++ LR+ ++PIN ++ +E ++ R Y SNA R +T EYV+L +ND A Sbjct: 223 LHAPNDKLRSEIMPINDRWNIEAFLEVVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAH 282 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L ++LKG P KINLIPFNP+PG Y I F + + + ++ IR RG DI A Sbjct: 283 ELAELLKGTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDA 342 Query: 361 ACGQL-KSLSKRIPKVPRQE 379 ACGQL + R + ++ Sbjct: 343 ACGQLVGDVIDRTKRTKAKQ 362 >gi|37678948|ref|NP_933557.1| hypothetical protein VV0764 [Vibrio vulnificus YJ016] gi|81758246|sp|Q7MNF3|RLMN_VIBVY RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|37197690|dbj|BAC93528.1| predicted Fe-S-cluster redox enzyme [Vibrio vulnificus YJ016] Length = 374 Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats. Identities = 150/379 (39%), Positives = 212/379 (55%), Gaps = 25/379 (6%) Query: 5 KKESLIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +K +L+ R+ L E ++G R Q+ KWIY G+ DF M++I++++R Sbjct: 4 EKINLLDFDRKGLRELFAQELG----EKAFRADQVMKWIYHFGVDDFDNMTNINKQLREK 59 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L Q I+ P + + + S DGT KW +R ++ETVYIPE+ R TLCVSSQVG Sbjct: 60 LKQKCEIVAPVVSEAQHSSDGTIKWAMRVGD------QDVETVYIPEEDRATLCVSSQVG 113 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L C FC T Q RNL EI+ QV A +G + + R I+N+V Sbjct: 114 CALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREVG----------LEKETGRRPITNVV 163 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ +I V LAISL Sbjct: 164 MMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAISL 223 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALN 301 HA ++ LR+ ++PIN ++ ++ + + R Y SNA R +T EYV+L +ND A Sbjct: 224 HAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAHE 283 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L +++K P KINLIPFNP+PG Y I F + + + ++ IR RG DI AA Sbjct: 284 LAQLMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAA 343 Query: 362 CGQLKSLSKRIPKVPRQEM 380 CGQL I + R M Sbjct: 344 CGQLVGDV--IDRTKRTAM 360 >gi|311029975|ref|ZP_07708065.1| ribosomal RNA large subunit methyltransferase N [Bacillus sp. m3-13] Length = 363 Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats. Identities = 123/368 (33%), Positives = 208/368 (56%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K S+ + ELEE LL IG + RT+QI++W+Y + + F+ MS++S+ +R L Sbjct: 16 RKPSIYSLQLHELEEWLLSIG----EKKFRTTQIFEWLYQKRVTSFEEMSNLSKSLRDKL 71 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + +++ + + ++ S DGT K+L IETV + + ++CV++QVGC Sbjct: 72 EETYALTTLKTIVQQTSSDGTMKFLFELHD-----GYSIETVLMKHEYGNSVCVTTQVGC 126 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 127 RIGCTFCASTLGGLKRNLEAGEIVAQVVKVQQALDEMD--------------ERVSHVVI 172 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP NFD + L I + L+ R IT+STSG +P I + +E + + A+SL Sbjct: 173 MGIGEPFDNFDEMLDFLKIINHDQALNIGARHITVSTSGIIPKIYKFADENMQINFAVSL 232 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA + ++R+ L+PINR Y L L+++ R+Y + R++FEY + G+ND A L Sbjct: 233 HAPNTEIRSRLMPINRAYKLPDLMESIRYYINKTGR-RVSFEYGLFGGVNDQVEHAEELA 291 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LKG+ +NLIP N P +Y+ + ++ I F + +K G + +R +G DI AACG Sbjct: 292 QLLKGMKCHVNLIPVNYVPERDYVRTPKEQINLFEKTLKNLGVNVTVRREQGHDIDAACG 351 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 352 QLRAKERK 359 >gi|121726066|ref|ZP_01679365.1| conserved hypothetical protein [Vibrio cholerae V52] gi|153216236|ref|ZP_01950336.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|153800552|ref|ZP_01955138.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|153829401|ref|ZP_01982068.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|227080936|ref|YP_002809487.1| hypothetical protein VCM66_0715 [Vibrio cholerae M66-2] gi|229513104|ref|ZP_04402570.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae TMA 21] gi|229523420|ref|ZP_04412827.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae TM 11079-80] gi|229525403|ref|ZP_04414808.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae bv. albensis VL426] gi|229530113|ref|ZP_04419503.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae 12129(1)] gi|254225020|ref|ZP_04918634.1| conserved hypothetical protein [Vibrio cholerae V51] gi|254285475|ref|ZP_04960439.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|262192502|ref|ZP_06050653.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae CT 5369-93] gi|297581156|ref|ZP_06943080.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|298499110|ref|ZP_07008917.1| cfr family radical SAM enzyme [Vibrio cholerae MAK 757] gi|254807221|sp|C3LT10|RLMN_VIBCM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|121631548|gb|EAX63918.1| conserved hypothetical protein [Vibrio cholerae V52] gi|124114381|gb|EAY33201.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|124123841|gb|EAY42584.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|125622407|gb|EAZ50727.1| conserved hypothetical protein [Vibrio cholerae V51] gi|148875121|gb|EDL73256.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|150424337|gb|EDN16274.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|227008824|gb|ACP05036.1| conserved hypothetical protein [Vibrio cholerae M66-2] gi|229333887|gb|EEN99373.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae 12129(1)] gi|229338984|gb|EEO04001.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae bv. albensis VL426] gi|229339783|gb|EEO04798.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae TM 11079-80] gi|229349997|gb|EEO14951.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae TMA 21] gi|262031661|gb|EEY50248.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae CT 5369-93] gi|297534472|gb|EFH73309.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|297543443|gb|EFH79493.1| cfr family radical SAM enzyme [Vibrio cholerae MAK 757] gi|327483542|gb|AEA77949.1| Ribosomal RNA large subunit methyltransferase N [Vibrio cholerae LMA3894-4] Length = 373 Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats. Identities = 148/380 (38%), Positives = 207/380 (54%), Gaps = 22/380 (5%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 +K +L+ R+ L + R Q+ KWIY G DF M++I++++R Sbjct: 2 TTEKVNLLDFDRKGLRTFFAE---ELGEKAFRAEQVMKWIYHFGCDDFDQMNNINKQLRE 58 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L I P + + + S DGT KW +R ++ETVYIPE R TLCVSSQV Sbjct: 59 KLKAKCEIRAPYVSEAQHSADGTIKWAMRVGD------QDVETVYIPEDDRATLCVSSQV 112 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L C FC T Q RNL EI+ QV A +G + + R I+N+ Sbjct: 113 GCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAREIG----------LEKETGRRPITNV 162 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ +I V LAIS Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQIDVALAIS 222 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300 LHA ++ LR+ ++PIN ++ +E ++ R Y SNA R +T EYV+L +ND A Sbjct: 223 LHAPNDKLRSEIMPINDRWNIEAFLEVVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAH 282 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L ++LKG P KINLIPFNP+PG Y I F + + + ++ IR RG DI A Sbjct: 283 ELAELLKGTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDA 342 Query: 361 ACGQL-KSLSKRIPKVPRQE 379 ACGQL + R + ++ Sbjct: 343 ACGQLVGDVIDRTKRTKAKQ 362 >gi|257093692|ref|YP_003167333.1| radical SAM enzyme, Cfr family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046216|gb|ACV35404.1| radical SAM enzyme, Cfr family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 373 Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats. Identities = 154/373 (41%), Positives = 211/373 (56%), Gaps = 16/373 (4%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+ + L + G R Q+ +W++ G DF M+DI++ +R L Sbjct: 3 VNLLDLDAAGLTAFFAECG----EKPFRARQVLRWLHRFGQLDFDAMTDIARSLREKLRA 58 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 ++ P ++ +++S DGTRK+L +GG +E V+IPE RGTLC+S+Q GC+L Sbjct: 59 TAQVLPPVVIADRLSDDGTRKFLF-----DVGGGNAVEAVFIPEAERGTLCISTQAGCAL 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 CSFC TG Q RNLT EI+ Q+ AR LG + E G R ISN+V+MG Sbjct: 114 DCSFCSTGKQGFNRNLTVAEIVGQLWQARHSLGAYAAGETAGGE------RVISNVVLMG 167 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N DN +L + D S+RR+T+STSG VP + R+ E V LA+SLHA Sbjct: 168 MGEPLANLDNTVTALRLMLDDNAYGLSRRRVTVSTSGLVPAMDRLRNECPVALAVSLHAP 227 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ LR+ LVPINRKYPL L+ AC Y + +TFEYVML G+NDS A L+ + Sbjct: 228 NDRLRDELVPINRKYPLHELMSACLRYLEKAPRDFVTFEYVMLAGVNDSDAQAHELLALT 287 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + +P K NLIPFNP+PG Y S I F+E + +G + R RG DI AACGQL Sbjct: 288 RDVPCKFNLIPFNPFPGSPYHRSSAPRIRQFAETLIDAGVVTTTRKTRGDDIDAACGQLA 347 Query: 367 SLS-KRIPKVPRQ 378 R + R+ Sbjct: 348 GQVLDRTQRTGRR 360 >gi|228922618|ref|ZP_04085918.1| Ribosomal RNA large subunit methyltransferase N [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228954141|ref|ZP_04116169.1| Radical SAM family enzyme [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229071362|ref|ZP_04204585.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus F65185] gi|229081119|ref|ZP_04213629.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus Rock4-2] gi|229180140|ref|ZP_04307484.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus 172560W] gi|229192033|ref|ZP_04319003.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus ATCC 10876] gi|228591584|gb|EEK49433.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus ATCC 10876] gi|228603349|gb|EEK60826.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus 172560W] gi|228702163|gb|EEL54639.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus Rock4-2] gi|228711816|gb|EEL63768.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus F65185] gi|228805461|gb|EEM52052.1| Radical SAM family enzyme [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228837047|gb|EEM82388.1| Ribosomal RNA large subunit methyltransferase N [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 362 Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats. Identities = 126/368 (34%), Positives = 206/368 (55%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++S+ +R L Sbjct: 15 KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I + ++ S DGT K+L + IETV + + ++CV++QVGC Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQLYD-----GYSIETVLMRHEYGNSICVTTQVGC 125 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+DN+ L I + GL R +T+STSG +P I + EE + + AISL Sbjct: 172 MGIGEPFDNYDNLMGFLRIINHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++LR+ L+PINR Y L L++A ++Y + RITFEY + G ND A L Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRTGR-RITFEYGLFGGENDQVEHAEELA 290 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 351 QLRAKERK 358 >gi|296504359|ref|YP_003666059.1| radical SAM protein [Bacillus thuringiensis BMB171] gi|296325411|gb|ADH08339.1| radical SAM protein [Bacillus thuringiensis BMB171] Length = 362 Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats. Identities = 126/368 (34%), Positives = 207/368 (56%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++S+ +R L Sbjct: 15 KKPSIYSLQLHEMQDWLKEQGEP----KFRAVQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I + + ++ S DGT K+L + IETV + + ++CV++QVGC Sbjct: 71 SNSFDITTLKTLVKQTSSDGTIKFLFQLYD-----GYSIETVLMRHEYGNSICVTTQVGC 125 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+DN+ L I + GL R +T+STSG +P I + EE + + AISL Sbjct: 172 MGIGEPFDNYDNLMGFLRIINHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++LR+ L+PINR Y L L++A ++Y + RITFEY + G ND A L Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRTGR-RITFEYGLFGGENDQVEHAEELA 290 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 351 QLRAKERK 358 >gi|47569490|ref|ZP_00240170.1| radical SAM enzyme, Cfr family [Bacillus cereus G9241] gi|47553819|gb|EAL12190.1| radical SAM enzyme, Cfr family [Bacillus cereus G9241] Length = 362 Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats. Identities = 126/368 (34%), Positives = 206/368 (55%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++S+ +R L Sbjct: 15 KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I + ++ S DGT K+L + IETV + + ++CV++QVGC Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQLYD-----GYSIETVLMRHEYGNSICVTTQVGC 125 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------SEERVSSLVV 171 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+DN+ L I + GL R +T+STSG +P I + EE + + AISL Sbjct: 172 MGIGEPFDNYDNLMGFLRIINHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++LR+ L+PINR Y L L++A ++Y + RITFEY + G ND A L Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRTGR-RITFEYGLFGGENDQVEHAEELA 290 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 351 QLRAKERK 358 >gi|229505629|ref|ZP_04395139.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae BX 330286] gi|229510699|ref|ZP_04400178.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae B33] gi|229517821|ref|ZP_04407265.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae RC9] gi|229608647|ref|YP_002879295.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae MJ-1236] gi|229344536|gb|EEO09510.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae RC9] gi|229350664|gb|EEO15605.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae B33] gi|229357852|gb|EEO22769.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae BX 330286] gi|229371302|gb|ACQ61725.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae MJ-1236] Length = 377 Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats. Identities = 148/380 (38%), Positives = 207/380 (54%), Gaps = 22/380 (5%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 +K +L+ R+ L + R Q+ KWIY G DF M++I++++R Sbjct: 6 TTEKINLLDFDRKGLRTFFAE---ELGEKAFRAEQVMKWIYHFGCDDFDQMNNINKQLRE 62 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L I P + + + S DGT KW +R ++ETVYIPE R TLCVSSQV Sbjct: 63 KLKAKCEIRAPYVSEAQHSADGTIKWAMRVGD------QDVETVYIPEDDRATLCVSSQV 116 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L C FC T Q RNL EI+ QV A +G + + R I+N+ Sbjct: 117 GCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAREIG----------LEKETGRRPITNV 166 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ +I V LAIS Sbjct: 167 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQIDVALAIS 226 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300 LHA ++ LR+ ++PIN ++ +E ++ R Y SNA R +T EYV+L +ND A Sbjct: 227 LHAPNDKLRSEIMPINDRWNIEAFLEVVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAH 286 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L ++LKG P KINLIPFNP+PG Y I F + + + ++ IR RG DI A Sbjct: 287 ELAELLKGTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDA 346 Query: 361 ACGQL-KSLSKRIPKVPRQE 379 ACGQL + R + ++ Sbjct: 347 ACGQLVGDVIDRTKRTKAKQ 366 >gi|262402858|ref|ZP_06079419.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. RC586] gi|262351640|gb|EEZ00773.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. RC586] Length = 373 Score = 441 bits (1134), Expect = e-122, Method: Composition-based stats. Identities = 146/380 (38%), Positives = 207/380 (54%), Gaps = 22/380 (5%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 +K +L+ R+ L + R Q+ KWIY G DF M++I++++R Sbjct: 2 TTEKINLLDFDRKGLRTFFAE---ELGEKAFRAEQVMKWIYHFGCDDFDQMNNINKQLRE 58 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L I P + + S DGT KW +R ++ETVYIPE+ R TLCVSSQV Sbjct: 59 KLKAKCEIRAPYVSAAQHSADGTIKWAMRVGD------QDVETVYIPEEDRATLCVSSQV 112 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L C FC T Q RNL EI+ QV A +G + + R I+N+ Sbjct: 113 GCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAREIG----------LEKETGRRPITNV 162 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ +I V LAIS Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQIDVALAIS 222 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300 LHA +++LR+ ++PIN ++ ++ + R Y SNA R +T EYV+L +ND A Sbjct: 223 LHAPNDELRSQIMPINDRWNIQEFLATVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAH 282 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L +++KG P KINLIPFNP+PG Y I F + + + ++ IR RG DI A Sbjct: 283 ELAELMKGTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDA 342 Query: 361 ACGQL-KSLSKRIPKVPRQE 379 ACGQL + R + ++ Sbjct: 343 ACGQLVGDVIDRTKRTKAKQ 362 >gi|90408602|ref|ZP_01216757.1| hypothetical protein PCNPT3_04766 [Psychromonas sp. CNPT3] gi|90310294|gb|EAS38424.1| hypothetical protein PCNPT3_04766 [Psychromonas sp. CNPT3] Length = 372 Score = 441 bits (1134), Expect = e-122, Method: Composition-based stats. Identities = 156/380 (41%), Positives = 217/380 (57%), Gaps = 23/380 (6%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 +KK +L+ + RE L + +G R Q+ KWIY G DF MS+I++++R Sbjct: 2 SIKKVNLLNLNREGLRAFFVDMG----EKAFRAEQVMKWIYHYGCDDFSEMSNINKKLRE 57 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L I+ PE+ E+ S DGT KW+++ +IETVYIPEK R TLCVSSQV Sbjct: 58 KLTLCAEIVAPEVRVEQRSKDGTIKWVMKVGD------QDIETVYIPEKDRATLCVSSQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L C+FC T Q RNLT EI+ QV A ++G ++ S R I+N+ Sbjct: 112 GCALACNFCSTAQQGFNRNLTVSEIIGQVWRAAKIVG----------VMGESGKRPITNV 161 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL N +NV ++ + D G + SKRR+T+STSG VP + +G+ I V LAIS Sbjct: 162 VMMGMGEPLLNLNNVIPAMELMLDDFGYALSKRRVTISTSGVVPALDILGDRIDVALAIS 221 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300 LHA +++LR+ ++PIN KY + + + Y S A R +T EY++L NDS A Sbjct: 222 LHASNDELRSQMMPINDKYNIADFLAGVKRYIAKSKANRGKVTIEYLLLDHFNDSTDQAH 281 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L +LK P KINLIPFNP+P Y + F++ + GY+ +R RG DI A Sbjct: 282 ELAILLKDTPCKINLIPFNPFPDNSYKKPSNSRVDRFNKVLMEYGYTVIVRKTRGDDIDA 341 Query: 361 ACGQL-KSLSKRIPKVPRQE 379 ACGQL + R + R+ Sbjct: 342 ACGQLVGDVIDRTKRTMRKR 361 >gi|257084807|ref|ZP_05579168.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|256992837|gb|EEU80139.1| conserved hypothetical protein [Enterococcus faecalis Fly1] Length = 357 Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats. Identities = 133/379 (35%), Positives = 217/379 (57%), Gaps = 26/379 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++KES+ G+ RE+L + L G + R +Q+W+W+Y + + F MS+I + + L Sbjct: 1 MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNIPKSLMTL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L ++FS+ + V + + DGT K+L P + + IETV + ++ ++CV++QVG Sbjct: 57 LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+LTA EI+ Q++ + + + ++S++V Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYFDE------------RGLDERVSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+ NV L +D GL+ R IT+STSG VP I + + V LAIS Sbjct: 160 VMGIGEPFDNYANVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N++R ++ INR +P+E L+ A Y +N R+TFEY+ML +ND P A L Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKTNR-RVTFEYIMLSQVNDRPEHAQQL 278 Query: 303 IKILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 +L+ + +NLIP+NP + Y S ++ ++ F + +K++G + IR G DI Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338 Query: 360 AACGQLKSLSKRIPKVPRQ 378 AACGQL+S + KV Q Sbjct: 339 AACGQLRSKQMKKEKVENQ 357 >gi|300312259|ref|YP_003776351.1| Fe-S-cluster redox enzyme protein [Herbaspirillum seropedicae SmR1] gi|300075044|gb|ADJ64443.1| Fe-S-cluster redox enzyme protein [Herbaspirillum seropedicae SmR1] Length = 390 Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats. Identities = 152/379 (40%), Positives = 217/379 (57%), Gaps = 19/379 (5%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+ M +L ++G R Q+ +WI+ G+ DF M+D+++ +R L Sbjct: 6 TNLLDMDPAQLVAYCGELG----EKPFRAKQLQRWIHQFGVADFDQMTDLAKSLRDKLKT 61 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + P I+ + S DGTRKWL+ +G +ETV+IPE++RGTLCVS+Q GC++ Sbjct: 62 RAEVRAPAIISDHTSTDGTRKWLV-----DVGQGNAVETVFIPEENRGTLCVSTQAGCAV 116 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG Q RNL+ EI+ Q+ +A L G E P R+I+N+VMMG Sbjct: 117 NCRFCSTGKQGFNRNLSVAEIIGQLWMAEFELRKTKGIE-----GGPKGERQITNVVMMG 171 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL NF+ +L + D S+RR+TLSTSG VP I ++ +E V LA+SLHA Sbjct: 172 MGEPLLNFEPTVTALRLMLDDNAYGLSRRRVTLSTSGVVPMIGKLSQECPVALAVSLHAS 231 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ LR+ L+P+NRK+PL L+ AC+ Y + ITFEY ML G+ND+ A L+ ++ Sbjct: 232 NDALRDSLIPLNRKHPLRELMLACKRYLEFAPRDFITFEYCMLDGVNDTDTHARELVALV 291 Query: 307 K----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K IP K NLIPFNP+P S I F++ + +G + IR RG DI AAC Sbjct: 292 KEGETAIPCKFNLIPFNPFPESGLKRSHNPRIKAFAQILMDAGIVTTIRKTRGDDIDAAC 351 Query: 363 GQLKSLSKRIPKVPRQEMQ 381 GQL K +V ++ MQ Sbjct: 352 GQLAGEVKDRTRV-QERMQ 369 >gi|261212143|ref|ZP_05926429.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. RC341] gi|260838751|gb|EEX65402.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. RC341] Length = 373 Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats. Identities = 146/380 (38%), Positives = 207/380 (54%), Gaps = 22/380 (5%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 +K +L+ R+ L + R Q+ KWIY G DF M++I++++R Sbjct: 2 TTEKINLLDFDRKGLRTFFAE---ELGEKAFRAEQVMKWIYHFGCDDFDQMNNINKQLRE 58 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L I P + + S DGT KW +R ++ETVYIPE+ R TLCVSSQV Sbjct: 59 KLKAKCEIRAPYVSAAQHSADGTIKWAMRVGD------QDVETVYIPEEDRATLCVSSQV 112 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L C FC T Q RNL EI+ QV A +G + + R I+N+ Sbjct: 113 GCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAREIG----------LEKETGRRPITNV 162 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ +I V LAIS Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQIDVALAIS 222 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300 LHA +++LR+ ++PIN ++ ++ + R Y SNA R +T EYV+L +ND A Sbjct: 223 LHAPNDELRSQIMPINDRWNIQEFLATVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAH 282 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L +++KG P KINLIPFNP+PG Y I F + + + ++ IR RG DI A Sbjct: 283 ELAELMKGTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDA 342 Query: 361 ACGQL-KSLSKRIPKVPRQE 379 ACGQL + R + ++ Sbjct: 343 ACGQLVGDVIDRTKRTKTKQ 362 >gi|229086417|ref|ZP_04218593.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus Rock3-44] gi|228696933|gb|EEL49742.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus Rock3-44] Length = 362 Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats. Identities = 125/368 (33%), Positives = 206/368 (55%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S+ + E++E L + G P + R QI+ W+Y + +++++ M+++S+ +R L Sbjct: 15 KKPSIYSLQLHEMQEWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMTNLSKGLRDKL 70 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I + ++ S DGT K+L + IETV + + ++CV++QVGC Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQLYD-----GYSIETVLMRHEYGNSICVTTQVGC 125 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+DN+ L I + G+ R +T+STSG +P I + EE + + AISL Sbjct: 172 MGIGEPFDNYDNLMAFLRIVNHEKGIHIGARHMTVSTSGIIPKIYKFAEEDMQINFAISL 231 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA + +LR+ L+PINR Y L L++A ++Y + RITFEY + G ND A L Sbjct: 232 HAPNTELRSKLMPINRAYKLPDLMEAIKYYVNRTGR-RITFEYGLFGGENDQVEHAEELA 290 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG Sbjct: 291 QLLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 351 QLRAKERK 358 >gi|320157276|ref|YP_004189655.1| ribosomal RNA large subunit methyltransferase N [Vibrio vulnificus MO6-24/O] gi|326423711|ref|NP_759425.2| ribosomal RNA large subunit methyltransferase N [Vibrio vulnificus CMCP6] gi|319932588|gb|ADV87452.1| ribosomal RNA large subunit methyltransferase N [Vibrio vulnificus MO6-24/O] gi|319999069|gb|AAO08952.2| Ribosomal RNA large subunit methyltransferase N [Vibrio vulnificus CMCP6] Length = 374 Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 149/379 (39%), Positives = 212/379 (55%), Gaps = 25/379 (6%) Query: 5 KKESLIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +K +L+ R+ + E ++G R Q+ KWIY G+ DF M++I++++R Sbjct: 4 EKINLLDFDRKGMRELFAQELG----EKAFRADQVMKWIYHFGVDDFDNMTNINKQLREK 59 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L Q I+ P + + + S DGT KW +R ++ETVYIPE+ R TLCVSSQVG Sbjct: 60 LKQKCEIVAPVVSEAQHSSDGTIKWAMRVGD------QDVETVYIPEEDRATLCVSSQVG 113 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L C FC T Q RNL EI+ QV A +G + + R I+N+V Sbjct: 114 CALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREVG----------LEKETGRRPITNVV 163 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ +I V LAISL Sbjct: 164 MMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAISL 223 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALN 301 HA ++ LR+ ++PIN ++ ++ + + R Y SNA R +T EYV+L +ND A Sbjct: 224 HAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAHE 283 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L +++K P KINLIPFNP+PG Y I F + + + ++ IR RG DI AA Sbjct: 284 LAQLMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAA 343 Query: 362 CGQLKSLSKRIPKVPRQEM 380 CGQL I + R M Sbjct: 344 CGQLVGDV--IDRTKRTAM 360 >gi|88812659|ref|ZP_01127906.1| hypothetical protein NB231_00700 [Nitrococcus mobilis Nb-231] gi|88790075|gb|EAR21195.1| hypothetical protein NB231_00700 [Nitrococcus mobilis Nb-231] Length = 378 Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 159/360 (44%), Positives = 219/360 (60%), Gaps = 21/360 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ R+ L+E L ++G P R Q+ KWI+ R + DF M+D+ + +R L Sbjct: 17 KANLLNFDRQALQEWLAQLGEPP----FRAVQLIKWIHQRRVFDFDRMTDLGKPLRARLA 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I P V ++ S DG RKWLL G IETV+IPE RGTLCVSSQ+GC Sbjct: 73 EIAEIRLPSAVFDRTSADGVRKWLLTL-----DGDNAIETVFIPEPGRGTLCVSSQLGCP 127 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC TG Q RNLTA EI+ Q+L + + V +++N+V M Sbjct: 128 LACTFCSTGQQGFNRNLTAAEIVGQLLFV------------TQALAADGVAGRVTNVVFM 175 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF +V K+ ++ D + S+RR+TLSTSG VP + R+ E + LA+SLHA Sbjct: 176 GMGEPLANFASVLKASNLMVDEHAYNLSRRRVTLSTSGIVPALYRLAEVSRISLAVSLHA 235 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + LR+ LVPINRKYP+ L+ ACR+Y + RIT+EYVML +ND+ A L ++ Sbjct: 236 PDDALRDELVPINRKYPIAELLAACRNYVECTPHHRITWEYVMLDAVNDTDGHAQALARL 295 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG+P+KINLIPFN +PG Y S + + F+E ++R+GY + +R RG DI ACGQL Sbjct: 296 LKGVPSKINLIPFNAFPGAPYRSSPPQRVARFTEILQRAGYITTVRKTRGDDIDGACGQL 355 >gi|167627914|ref|YP_001678414.1| radical SAM superfamily protein [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|205829762|sp|B0U083|RLMN_FRAP2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|167597915|gb|ABZ87913.1| radical SAM superfamily protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 370 Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 157/382 (41%), Positives = 232/382 (60%), Gaps = 22/382 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K +L+G+ ++ +E+ + IG + Q++KWI+ +G+ DF M+D+ + +R+ L Sbjct: 4 DKINLLGLNQKAIEDFFISIG----EKKFHARQVFKWIHKKGVIDFDSMTDLGKNLRNKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 ++ I+ P++V K S DGT KWL+ G +ETV+IPE+ RGTLCVSSQVGC Sbjct: 60 KENAEIVIPKVVFNKASKDGTHKWLIDV------GGSAVETVFIPEEGRGTLCVSSQVGC 113 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L CSFC TG Q RNL++ E++ Q+ +A L G D ++NIVM Sbjct: 114 TLNCSFCSTGKQGFNRNLSSAEVISQLWIAARTLSKNNGEHDFS----------VTNIVM 163 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NF+NV ++ I D + S+R++TLSTSG VP I + E+ GV LA+SLH Sbjct: 164 MGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLH 223 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++ LRN +VPIN+KY ++ L++AC+ Y + ITFEY +++ +ND+ DA LI+ Sbjct: 224 APTDSLRNEIVPINKKYNIDELLEACKLYAEKGPHKHITFEYTLMEEVNDNLSDAEQLIE 283 Query: 305 ILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +L+ PAKINLIPFNP+PG Y I F E ++ +G+ + +R RG DI AAC Sbjct: 284 LLRSREVPAKINLIPFNPYPGTPYRKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAAC 343 Query: 363 GQLKSLSKRIPKVPRQEMQITG 384 GQL K + ++ G Sbjct: 344 GQLAGDVMDKTKRKERYLKKLG 365 >gi|152980879|ref|YP_001353820.1| hypothetical protein mma_2130 [Janthinobacterium sp. Marseille] gi|205829777|sp|A6SZX3|RLMN_JANMA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|151280956|gb|ABR89366.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 387 Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 143/380 (37%), Positives = 215/380 (56%), Gaps = 18/380 (4%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M L +L+ + +L ++G R Q+ +WI+ G DF M+D+++ + Sbjct: 1 MTTL--TNLLDLDPAQLIAYCGELG----EKPFRAKQLQRWIHQFGASDFDAMTDLAKSL 54 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L I P ++ + S DGTRKWL+ +G +ETV+IPE++RGTLC+S+ Sbjct: 55 RDKLATRAIIAAPAVISDHTSADGTRKWLV-----DVGQGNAVETVFIPEENRGTLCIST 109 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC++ C FC TG Q RNL+ E++ Q+ +A +F P R+I+ Sbjct: 110 QAGCAVNCRFCSTGKQGFNRNLSVGEVIGQLWMA-----EFELRRTKGIEPGPKGERQIT 164 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N++ +L + D S+RR+TLSTSG VP I ++ ++ V LA Sbjct: 165 NVVMMGMGEPLLNYEPTVTALKLMLDDNAYGLSRRRVTLSTSGVVPMIDKLSQDCAVALA 224 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++ LR+ LVP+N+KYPL L+ AC+ Y + +TFEY ML G+NDS + A Sbjct: 225 VSLHASNDALRDGLVPLNKKYPLVELMAACKRYLEFAPRDFVTFEYCMLDGVNDSDQHAR 284 Query: 301 NLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 LI +++ +P K NLIPFNP+P S I F++ + +G + +R RG DI Sbjct: 285 ELIALVRQADVPCKFNLIPFNPFPESGLTRSHNPRIKAFAQVLMDAGIVTTVRKTRGDDI 344 Query: 359 LAACGQLKSLSKRIPKVPRQ 378 AACGQL + +V + Sbjct: 345 DAACGQLAGEVQDRTRVQDR 364 >gi|319892212|ref|YP_004149087.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus pseudintermedius HKU10-03] gi|317161908|gb|ADV05451.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus pseudintermedius HKU10-03] gi|323464690|gb|ADX76843.1| radical SAM enzyme, Cfr family [Staphylococcus pseudintermedius ED99] Length = 364 Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 128/370 (34%), Positives = 205/370 (55%), Gaps = 25/370 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K+S+ + +EL+ L + G R QI++W+Y + + F+ M+++S+ +R LL Sbjct: 17 EKQSIYSLRFDELQGWLKENG----QQSFRAKQIYEWLYDKRVDSFEEMTNLSKALRQLL 72 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 HF+I V + S DGT K+L IETV + ++CV++QVGC Sbjct: 73 ADHFTITTLATVVRQESRDGTIKFLFELQD-----GYTIETVLMRHDYGNSVCVTTQVGC 127 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QVL + L + ++S+IV+ Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TDERVSSIVI 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+D + L I +D L+ R IT+STSG VP I +E + + A+SL Sbjct: 174 MGIGEPFENYDEMMDFLKIVNDDHSLNIGARHITVSTSGIVPRIYDFADESLQINFAVSL 233 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +N++R+ L+PINR Y ++ L++A ++Y + RITFEY + G+ND A L Sbjct: 234 HAANNEIRSKLMPINRAYDVDKLMEAIQYYQEKTKR-RITFEYGLFGGVNDQLEHARELA 292 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K++K + +NLIP N P Y+ + + DI F + +K+ G ++ IR +G DI AACG Sbjct: 293 KLIKPLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKKLGINATIRREQGADIDAACG 352 Query: 364 QLKSLSKRIP 373 QL++ ++ Sbjct: 353 QLRAKERQAE 362 >gi|241668466|ref|ZP_04756044.1| radical SAM superfamily protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877000|ref|ZP_05249710.1| radical SAM family protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843021|gb|EET21435.1| radical SAM family protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 370 Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 156/382 (40%), Positives = 232/382 (60%), Gaps = 22/382 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K +L+G+ ++ +E+ + IG + Q++KWI+ +G+ DF M+D+ + +R+ L Sbjct: 4 DKINLLGLNQKAIEDFFISIG----EKKFHARQVFKWIHKKGVIDFDSMTDLGKNLRNKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 ++ I+ P++V K S DGT KWL+ G +ETV+IPE+ RGTLCVSSQVGC Sbjct: 60 RENAEIVIPKVVFNKASKDGTHKWLIDV------GGSAVETVFIPEEGRGTLCVSSQVGC 113 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L CSFC TG Q RNL++ E++ Q+ +A L G D ++NIVM Sbjct: 114 TLNCSFCSTGKQGFNRNLSSAEVISQLWIAARTLSKNNGEHDFS----------VTNIVM 163 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NF+NV ++ I D + S+R++TLSTSG VP I + E+ GV LA+SLH Sbjct: 164 MGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLH 223 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++ LRN +VPIN+KY ++ L++AC+ Y + ITFEY +++ +ND+ DA L++ Sbjct: 224 APTDSLRNEIVPINKKYNIDELLEACKLYAEKGPHKHITFEYTLMEEVNDNLSDAEQLVE 283 Query: 305 ILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +L+ PAKINLIPFNP+PG Y I F E ++ +G+ + +R RG DI AAC Sbjct: 284 LLRSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAAC 343 Query: 363 GQLKSLSKRIPKVPRQEMQITG 384 GQL K + ++ G Sbjct: 344 GQLAGDVMDKTKRKERYLKKLG 365 >gi|258545517|ref|ZP_05705751.1| Cfr family radical SAM enzyme [Cardiobacterium hominis ATCC 15826] gi|258519217|gb|EEV88076.1| Cfr family radical SAM enzyme [Cardiobacterium hominis ATCC 15826] Length = 367 Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 160/382 (41%), Positives = 218/382 (57%), Gaps = 24/382 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K +L + RE + + G R Q+ KWIY + DF M+D+S+ +R L Sbjct: 3 DKINLFDLDREAMTAWFIDNG----EKPFRAKQLLKWIYHERVTDFDAMTDLSKPLREKL 58 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + +P I+ +K + DGTRKW+ R+ IE V+IPE RGTLC+SSQ GC Sbjct: 59 KNIAELRFPTIIADKTASDGTRKWIFRYDC-----GNSIEAVFIPEDDRGTLCISSQAGC 113 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC TG RNLT EI++QV LA+ DI R ++N+V+ Sbjct: 114 ALACPFCSTGHAGFNRNLTTGEIIVQVWLAK----------DILNCDRHGNNRVVTNVVL 163 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NF+NV + + D SKRR+TLSTSG VP I + E + LA+SLH Sbjct: 164 MGMGEPLVNFNNVLPATRLMMDDHAFGLSKRRVTLSTSGIVPAIHALREVTDLSLAVSLH 223 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALNLI 303 A +++LRN +VP+N +Y L L+DAC Y + +T+EYVML+ +NDS A L Sbjct: 224 APNDELRNQIVPVNARYGLAALLDACHQYVRHNGQHGGVTWEYVMLRDVNDSLEHARQLA 283 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++L+GIP KINLIPFN +PG Y CS + DI+ F + +GY + IR RG DI AACG Sbjct: 284 ELLRGIPGKINLIPFNAFPGSRYQCSRRSDILAFQRYLTENGYVATIRKTRGEDIDAACG 343 Query: 364 QLKSLSK----RIPKVPRQEMQ 381 QL K R K R+E++ Sbjct: 344 QLVGQFKDRLIRERKQTRKEVE 365 >gi|311068096|ref|YP_003973019.1| ribosomal RNA large subunit methyltransferase N [Bacillus atrophaeus 1942] gi|310868613|gb|ADP32088.1| ribosomal RNA large subunit methyltransferase N [Bacillus atrophaeus 1942] Length = 363 Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 119/368 (32%), Positives = 200/368 (54%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 + S+ +EL+ L + G R +QI++W+Y + + F+ M+++S+ +R L Sbjct: 16 ENPSIYSFELDELQTWLTENG----EKPFRAAQIFEWLYEKRVSSFEDMTNLSKSLREKL 71 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + HF + + ++ S DGT K+L IETV + + ++CV++QVGC Sbjct: 72 SSHFVLTTLKTAVKQTSQDGTMKFLFELHD-----GYTIETVLMRHEYGNSVCVTTQVGC 126 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 127 RIGCTFCASTLGGLKRNLEAGEIVAQVVKVQKALDE--------------TDERVSSVVI 172 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP NF+ + L I + GL+ R IT+STSG +P I ++ + + AISL Sbjct: 173 MGIGEPFDNFNEMLAFLKIINHDKGLNIGARHITVSTSGIIPKIYDFADQQMQINFAISL 232 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA + ++R+ L+PIN+ Y L L++A ++Y + RI+FEY + G+ND A L Sbjct: 233 HAPNTEIRSRLMPINKAYKLPELMEAVKYYIEKTGR-RISFEYGLFGGVNDQVEHAEELA 291 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LKG+ +NLIP N P +Y+ + + I F + +K G + IR +G DI AACG Sbjct: 292 ALLKGVKCHVNLIPVNYVPERDYVRTPKDQIFAFEKTLKSHGVNVTIRREQGHDIDAACG 351 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 352 QLRAKERQ 359 >gi|325919431|ref|ZP_08181457.1| 23S rRNA m(2)A-2503 methyltransferase [Xanthomonas gardneri ATCC 19865] gi|325550097|gb|EGD20925.1| 23S rRNA m(2)A-2503 methyltransferase [Xanthomonas gardneri ATCC 19865] Length = 401 Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 163/385 (42%), Positives = 226/385 (58%), Gaps = 28/385 (7%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 L+K++L+ + RE LE R R Q+ KWI+ R + DF M+D+ + +R Sbjct: 19 ELRKQNLLDLDREGLERFFAD---TLGEARYRAHQVMKWIHHRYVTDFDQMTDLGKALRA 75 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L+QH ++ P +V +K S DGT KWLL G IETVYIP+K RGTLCVSSQV Sbjct: 76 KLHQHAEVLVPTVVFDKPSTDGTHKWLLAM---GTDGKNAIETVYIPDKGRGTLCVSSQV 132 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C+FC T TQ RNLT EI+ QV +A LG+ +P R+++N+ Sbjct: 133 GCGLNCTFCSTATQGFNRNLTTAEIVGQVWVAARHLGN-----------VPHQQRRLTNV 181 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+S Sbjct: 182 VMMGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVS 241 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALN 301 LHA ++ LR LVP+N+KYP+ L+++C Y +TFEY ++KGIND P A Sbjct: 242 LHAANDALRESLVPLNKKYPIAELMESCARYLRGNKKRDSVTFEYTLMKGINDQPEHARQ 301 Query: 302 LIKILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353 L ++++ K+NLIPFNP+PG Y S + +I F + + + + +R Sbjct: 302 LARLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRT 361 Query: 354 RGLDILAACGQLKSLSKRIPKVPRQ 378 RG DI AACGQLK + + RQ Sbjct: 362 RGDDIDAACGQLKGQV--MDRTRRQ 384 >gi|228992592|ref|ZP_04152519.1| Ribosomal RNA large subunit methyltransferase N [Bacillus pseudomycoides DSM 12442] gi|228998640|ref|ZP_04158227.1| Ribosomal RNA large subunit methyltransferase N [Bacillus mycoides Rock3-17] gi|229006141|ref|ZP_04163828.1| Ribosomal RNA large subunit methyltransferase N [Bacillus mycoides Rock1-4] gi|228755094|gb|EEM04452.1| Ribosomal RNA large subunit methyltransferase N [Bacillus mycoides Rock1-4] gi|228761108|gb|EEM10067.1| Ribosomal RNA large subunit methyltransferase N [Bacillus mycoides Rock3-17] gi|228767226|gb|EEM15862.1| Ribosomal RNA large subunit methyltransferase N [Bacillus pseudomycoides DSM 12442] Length = 362 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 124/368 (33%), Positives = 205/368 (55%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S+ + E++ L + G P + R QI+ W+Y + +++++ M+++S+ +R L Sbjct: 15 KKTSIYSLQLHEMQNWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMTNLSKGLRDKL 70 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I + ++ S DGT K+L + IETV + + ++CV++QVGC Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQLYD-----GYSIETVLMRHEYGNSICVTTQVGC 125 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TDERVSSLVV 171 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+DN+ L I + G+ R +T+STSG +P I + EE + + AISL Sbjct: 172 MGIGEPFDNYDNLMSFLRIINHEKGIHIGARHMTVSTSGIIPKIYKFAEEDMQINFAISL 231 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA + +LR+ L+PINR Y L L++A ++Y + RITFEY + G ND A L Sbjct: 232 HAPNTELRSKLMPINRAYKLPDLMEAIKYYVNRTGR-RITFEYGLFGGENDQVEHAEELA 290 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG Sbjct: 291 QLLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 351 QLRAKERK 358 >gi|121998570|ref|YP_001003357.1| radical SAM protein [Halorhodospira halophila SL1] gi|205829772|sp|A1WXZ3|RLMN_HALHL RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|121589975|gb|ABM62555.1| 23S rRNA m(2)A-2503 methyltransferase [Halorhodospira halophila SL1] Length = 359 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 160/371 (43%), Positives = 215/371 (57%), Gaps = 27/371 (7%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+G+ R L +G R R QI +W++ R + DF M+D+S+ +R L +H Sbjct: 12 LLGLDRPRLAAFFDTLG----EKRFRARQIMQWLHQRHVYDFDEMTDLSKALRQRLREHA 67 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 + PE+ ++ + DGTRKW++R +E VYIPE RGTLC+SSQ GC + C Sbjct: 68 RVGLPEVAADQQASDGTRKWVVRL-----ADGNCVEAVYIPEPKRGTLCISSQAGCPMGC 122 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 +FC TG RNLTA EI+ QV +AR L + I+NIV MGMG Sbjct: 123 TFCATGEGGFSRNLTAAEIVGQVHVARQHLPEGA----------------ITNIVFMGMG 166 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN 248 EPL NFD V + + +D G SKRR+T+STSG V I R+ V LA+SLHA +N Sbjct: 167 EPLLNFDPVISASRVFTDDYGFVLSKRRVTISTSGVVHAIERMQRVTDVSLAVSLHAPNN 226 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 +LRN LVP+NRK PLE L+ AC Y RRIT+EYVML G+ND A L++ L+G Sbjct: 227 ELRNQLVPLNRKNPLERLLPACHAYIAEKPHRRITWEYVMLDGVNDQDEHARELLQRLRG 286 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 IP+K+NLIPFNP+PG Y + + + F++ + G ++ IR RG DI ACGQL Sbjct: 287 IPSKVNLIPFNPYPGARYGRTPDRQVRRFADRLLEHGLTATIRETRGDDIDGACGQLVGE 346 Query: 369 SK--RIPKVPR 377 + R KV R Sbjct: 347 IRDARASKVAR 357 >gi|319649619|ref|ZP_08003775.1| hypothetical protein HMPREF1013_00379 [Bacillus sp. 2_A_57_CT2] gi|317398781|gb|EFV79463.1| hypothetical protein HMPREF1013_00379 [Bacillus sp. 2_A_57_CT2] Length = 361 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 121/368 (32%), Positives = 201/368 (54%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K S+ + EL++ L + R QI+ W+Y + I F+ M+++S+ +R L Sbjct: 14 QKPSIYTLQLNELKDWLKEN----NEKAFRAEQIFDWLYTKRITSFEDMTNLSKGLRDTL 69 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + +FS+ + + ++ S DGT K+L IETV + ++CV++QVGC Sbjct: 70 SANFSLTTLKTIIQQESADGTIKFLFELHD-----GYSIETVLMRHDYGNSVCVTTQVGC 124 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 125 RIGCTFCASTLGGLKRNLEAGEIVAQVVKVQQALDE--------------TDERVSSVVI 170 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+D++ L I + GL+ R IT+STSG +P I + +E + + AISL Sbjct: 171 MGIGEPFDNYDSMLSFLKIINHDKGLNIGARHITVSTSGIIPKIYKFADENMQINFAISL 230 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA + ++R+ L+PINR Y L L+D+ R+Y + R++FEY + G+ND A L Sbjct: 231 HAPNTEIRSRLMPINRAYKLPDLMDSIRYYINKTGR-RVSFEYGLFGGVNDQVEHAEELA 289 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K++K + +NLIP N P +Y+ + + I F + +K G + IR G DI AACG Sbjct: 290 KLIKNVKCHVNLIPVNYVPERDYVRTPKDQIFAFEKTLKNHGINVTIRREHGHDIDAACG 349 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 350 QLRAKERK 357 >gi|294666609|ref|ZP_06731848.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603629|gb|EFF47041.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 405 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 162/383 (42%), Positives = 225/383 (58%), Gaps = 28/383 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K++L+ + RE LE R R Q+ KWI+ R + DF M+D+ + +R L Sbjct: 25 RKQNLLDLDREGLERFFAD---TLGEARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAKL 81 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +QH ++ P +V +K S DGT KWLL G IETVYIP+K RGTLCVSSQVGC Sbjct: 82 HQHAEVLVPNVVFDKPSSDGTHKWLLAM---GTDGKNAIETVYIPDKGRGTLCVSSQVGC 138 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 L C+FC T TQ RNLT EI+ QV +A LG+ +P R+++N+VM Sbjct: 139 GLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVVM 187 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SLH Sbjct: 188 MGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLH 247 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALNLI 303 A ++ LR LVP+N+KYP+ L+++C Y +TFEY ++KGIND P A L Sbjct: 248 AANDALRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLA 307 Query: 304 KILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 ++++ K+NLIPFNP+PG Y S + +I F + + + + +R RG Sbjct: 308 RLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRG 367 Query: 356 LDILAACGQLKSLSKRIPKVPRQ 378 DI AACGQLK + + RQ Sbjct: 368 DDIDAACGQLKGQV--MDRTRRQ 388 >gi|188991676|ref|YP_001903686.1| Radical SAM superfamily protein, probable [Xanthomonas campestris pv. campestris str. B100] gi|205829934|sp|B0RT51|RLMN_XANCB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|167733436|emb|CAP51637.1| Radical SAM superfamily protein, probable [Xanthomonas campestris pv. campestris] Length = 401 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 162/385 (42%), Positives = 225/385 (58%), Gaps = 28/385 (7%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 + K++L+ + RE LE R R Q+ KWI+ R + DF M+D+ + +R Sbjct: 19 TVHKQNLLDLDREGLEHFFAD---TLGEARYRAHQMMKWIHHRYVTDFDQMTDLGKALRA 75 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L+QH ++ P +V +K S DGT KWLL G IETVYIP+K RGTLCVSSQV Sbjct: 76 KLHQHAEVLVPNVVFDKPSTDGTHKWLLAM---GTDGKNAIETVYIPDKGRGTLCVSSQV 132 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C+FC T TQ RNLT EI+ QV +A LG+ +P R+++N+ Sbjct: 133 GCGLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNV 181 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+S Sbjct: 182 VMMGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLATESDVSLAVS 241 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALN 301 LHA ++ LR LVP+N+KYP+ L+++C Y +TFEY ++KGIND P A Sbjct: 242 LHAANDALRESLVPLNKKYPIAELMESCARYLRGNKKRDSVTFEYTLMKGINDQPEHARQ 301 Query: 302 LIKILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353 L ++++ K+NLIPFNP+PG Y S + +I F + + + + +R Sbjct: 302 LARLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRT 361 Query: 354 RGLDILAACGQLKSLSKRIPKVPRQ 378 RG DI AACGQLK + + RQ Sbjct: 362 RGDDIDAACGQLKGQV--MDRTRRQ 384 >gi|331005925|ref|ZP_08329273.1| transcriptional regulator, Crp/Fnr family [gamma proteobacterium IMCC1989] gi|330420281|gb|EGG94599.1| transcriptional regulator, Crp/Fnr family [gamma proteobacterium IMCC1989] Length = 403 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 157/378 (41%), Positives = 220/378 (58%), Gaps = 21/378 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+G+ +L IG + R Q+ KWI+ G+ DF MS+IS+ +R L Sbjct: 18 EKINLLGLSTSKLTAFFESIG----EKKFRAIQVQKWIHQNGVDDFSAMSNISKPLREKL 73 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 ++ I PE++ + S DGTRK+L++ + +ETV+IP+ RGTLCVSSQVGC Sbjct: 74 SRIAEIRAPEVIKQLDSVDGTRKFLIKVSGDNV-----VETVFIPDGDRGTLCVSSQVGC 128 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 SL CSFC TG Q R+LTA EI+ QV +A G P R ++N+VM Sbjct: 129 SLDCSFCATGKQGFNRDLTAAEIIGQVWIAAKSYGQLD----------PKADRTVTNVVM 178 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV S+++ D SKRR+TLSTSG VP + R+GE V LA+SLH Sbjct: 179 MGMGEPLLNFDNVVDSMNLMMDDNAYGLSKRRVTLSTSGVVPALDRLGEHCDVSLAVSLH 238 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPG--LSNARRITFEYVMLKGINDSPRDALNL 302 A ++ LRN LVPIN+KYP+ +L+ + + Y N R++T EY ++ +ND P A L Sbjct: 239 APNDALRNELVPINKKYPIAVLLASAKRYIDGLPDNRRKMTIEYTLIDQVNDRPHHAYEL 298 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++L+ IP KINLIPFNP+ Y + F + G+++ +RT RG DI AAC Sbjct: 299 AELLREIPVKINLIPFNPFDLVNYKRVSNNALRNFQNILINEGFTTTVRTTRGDDIDAAC 358 Query: 363 GQLKSLSKRIPKVPRQEM 380 GQL + + + Sbjct: 359 GQLAGDINDLTSRSARHL 376 >gi|229162800|ref|ZP_04290757.1| Radical SAM family enzyme [Bacillus cereus R309803] gi|228620682|gb|EEK77551.1| Radical SAM family enzyme [Bacillus cereus R309803] Length = 362 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 126/368 (34%), Positives = 206/368 (55%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++S+ +R L Sbjct: 15 KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I + ++ S DGT K+L + IETV + + ++CV++QVGC Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQLYD-----GYSIETVLMRHEYGNSICVTTQVGC 125 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TSERVSSLVV 171 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+DN+ L I + GL R +T+STSG +P I + EE + + AISL Sbjct: 172 MGIGEPFDNYDNLMGFLRITNHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++LR+ L+PINR Y L L++A ++Y + RITFEY + G ND A L Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRTGR-RITFEYGLFGGENDQVEHAEELA 290 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 351 QLRAKERK 358 >gi|229098333|ref|ZP_04229280.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus Rock3-29] gi|229104426|ref|ZP_04235095.1| Radical SAM family enzyme [Bacillus cereus Rock3-28] gi|229117350|ref|ZP_04246728.1| Radical SAM family enzyme [Bacillus cereus Rock1-3] gi|228666250|gb|EEL21714.1| Radical SAM family enzyme [Bacillus cereus Rock1-3] gi|228679124|gb|EEL33332.1| Radical SAM family enzyme [Bacillus cereus Rock3-28] gi|228685231|gb|EEL39162.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus Rock3-29] Length = 362 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 126/368 (34%), Positives = 206/368 (55%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++S+ +R L Sbjct: 15 KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I + ++ S DGT K+L + IETV + + ++CV++QVGC Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQLYD-----GYSIETVLMRHEYGNSICVTTQVGC 125 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+DN+ L I + GL R +T+STSG +P I + EE + + AISL Sbjct: 172 MGIGEPFDNYDNLMGFLRITNHEKGLHIGARHMTVSTSGIIPKIYKFAEEELQINFAISL 231 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++LR+ L+PINR Y L L++A ++Y + RITFEY + G ND A L Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRTGR-RITFEYGLFGGENDQVEHAEELA 290 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 351 QLRAKERK 358 >gi|205829947|sp|Q8PKZ1|RLMN_XANAC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase Length = 401 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 163/383 (42%), Positives = 225/383 (58%), Gaps = 28/383 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K++L+ + RE LE R R Q+ KWI+ R + DF M+D+ + +R L Sbjct: 21 RKQNLLDLDREGLERFFAD---TLGEARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAKL 77 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +QH ++ P +V +K S DGT KWLL G IETVYIP+K RGTLCVSSQVGC Sbjct: 78 HQHAEVLVPNVVFDKPSADGTHKWLLAM---GTDGKNAIETVYIPDKGRGTLCVSSQVGC 134 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 L CSFC T TQ RNLT EI+ QV +A LG+ +P R+++N+VM Sbjct: 135 GLNCSFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVVM 183 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SLH Sbjct: 184 MGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLH 243 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALNLI 303 A ++ LR LVP+N+KYP+ L+++C Y +TFEY ++KGIND P A L Sbjct: 244 AANDALRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLA 303 Query: 304 KILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 ++++ K+NLIPFNP+PG Y S + +I F + + + + +R RG Sbjct: 304 RLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRG 363 Query: 356 LDILAACGQLKSLSKRIPKVPRQ 378 DI AACGQLK + + RQ Sbjct: 364 DDIDAACGQLKGQV--MDRTRRQ 384 >gi|29376559|ref|NP_815713.1| ribosomal RNA large subunit methyltransferase N [Enterococcus faecalis V583] gi|227520169|ref|ZP_03950218.1| Fe-S-cluster redox enzyme [Enterococcus faecalis TX0104] gi|227555397|ref|ZP_03985444.1| Fe-S-cluster redox enzyme [Enterococcus faecalis HH22] gi|229549611|ref|ZP_04438336.1| Fe-S-cluster redox enzyme [Enterococcus faecalis ATCC 29200] gi|255972309|ref|ZP_05422895.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|255975469|ref|ZP_05426055.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|256956502|ref|ZP_05560673.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|256961519|ref|ZP_05565690.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|256962655|ref|ZP_05566826.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|257079424|ref|ZP_05573785.1| 23S rRNA methyltransferase [Enterococcus faecalis JH1] gi|257082189|ref|ZP_05576550.1| conserved hypothetical protein [Enterococcus faecalis E1Sol] gi|257090325|ref|ZP_05584686.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|257416428|ref|ZP_05593422.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG] gi|257419673|ref|ZP_05596667.1| conserved hypothetical protein [Enterococcus faecalis T11] gi|293382216|ref|ZP_06628158.1| radical SAM enzyme, Cfr family [Enterococcus faecalis R712] gi|293388635|ref|ZP_06633131.1| radical SAM enzyme, Cfr family [Enterococcus faecalis S613] gi|294780328|ref|ZP_06745697.1| radical SAM enzyme, Cfr family [Enterococcus faecalis PC1.1] gi|300860541|ref|ZP_07106628.1| 23S rRNA m2A2503 methyltransferase [Enterococcus faecalis TUSoD Ef11] gi|307270284|ref|ZP_07551592.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX4248] gi|307277716|ref|ZP_07558802.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0860] gi|307287862|ref|ZP_07567895.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0109] gi|312900861|ref|ZP_07760155.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0470] gi|312902828|ref|ZP_07762032.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0635] gi|312908292|ref|ZP_07767256.1| radical SAM enzyme, Cfr family [Enterococcus faecalis DAPTO 512] gi|312951214|ref|ZP_07770116.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0102] gi|81585123|sp|Q833B6|RLMN_ENTFA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|29344023|gb|AAO81783.1| conserved hypothetical protein TIGR00048 [Enterococcus faecalis V583] gi|227072382|gb|EEI10345.1| Fe-S-cluster redox enzyme [Enterococcus faecalis TX0104] gi|227175440|gb|EEI56412.1| Fe-S-cluster redox enzyme [Enterococcus faecalis HH22] gi|229305276|gb|EEN71272.1| Fe-S-cluster redox enzyme [Enterococcus faecalis ATCC 29200] gi|255963327|gb|EET95803.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|255968341|gb|EET98963.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|256946998|gb|EEU63630.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|256952015|gb|EEU68647.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|256953151|gb|EEU69783.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|256987454|gb|EEU74756.1| 23S rRNA methyltransferase [Enterococcus faecalis JH1] gi|256990219|gb|EEU77521.1| conserved hypothetical protein [Enterococcus faecalis E1Sol] gi|256999137|gb|EEU85657.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|257158256|gb|EEU88216.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG] gi|257161501|gb|EEU91461.1| conserved hypothetical protein [Enterococcus faecalis T11] gi|291080400|gb|EFE17764.1| radical SAM enzyme, Cfr family [Enterococcus faecalis R712] gi|291082010|gb|EFE18973.1| radical SAM enzyme, Cfr family [Enterococcus faecalis S613] gi|294452592|gb|EFG21025.1| radical SAM enzyme, Cfr family [Enterococcus faecalis PC1.1] gi|300849580|gb|EFK77330.1| 23S rRNA m2A2503 methyltransferase [Enterococcus faecalis TUSoD Ef11] gi|306501007|gb|EFM70314.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0109] gi|306505595|gb|EFM74779.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0860] gi|306513338|gb|EFM81962.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX4248] gi|310625706|gb|EFQ08989.1| radical SAM enzyme, Cfr family [Enterococcus faecalis DAPTO 512] gi|310630748|gb|EFQ14031.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0102] gi|310633882|gb|EFQ17165.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0635] gi|311291960|gb|EFQ70516.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0470] gi|315031044|gb|EFT42976.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0017] gi|315034600|gb|EFT46532.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0027] gi|315143477|gb|EFT87493.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX2141] gi|315149242|gb|EFT93258.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0012] gi|315152618|gb|EFT96634.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0031] gi|315159454|gb|EFU03471.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0312] gi|315164747|gb|EFU08764.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX1302] gi|315167578|gb|EFU11595.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX1341] gi|315171638|gb|EFU15655.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX1342] gi|315173222|gb|EFU17239.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX1346] gi|315575041|gb|EFU87232.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0309B] gi|315576758|gb|EFU88949.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0630] gi|315582467|gb|EFU94658.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0309A] gi|327535508|gb|AEA94342.1| cfr family radical SAM enzyme [Enterococcus faecalis OG1RF] gi|329568816|gb|EGG50616.1| 23S rRNA m2A2503 methyltransferase [Enterococcus faecalis TX1467] Length = 357 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 134/379 (35%), Positives = 218/379 (57%), Gaps = 26/379 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++KES+ G+ RE+L + L G + R +Q+W+W+Y + + F MS+IS+ + L Sbjct: 1 MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNISKSLMTL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L ++FS+ + V + + DGT K+L P + + IETV + ++ ++CV++QVG Sbjct: 57 LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+LTA EI+ Q++ + + + ++S++V Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYFDE------------RGLDERVSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+ NV L +D GL+ R IT+STSG VP I + + V LAIS Sbjct: 160 VMGIGEPFDNYANVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N++R ++ INR +P+E L+ A Y +N R+TFEY+ML +ND P A L Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKTNR-RVTFEYIMLSQVNDRPEHAQQL 278 Query: 303 IKILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 +L+ + +NLIP+NP + Y S ++ ++ F + +K++G + IR G DI Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338 Query: 360 AACGQLKSLSKRIPKVPRQ 378 AACGQL+S + KV Q Sbjct: 339 AACGQLRSKQMKKEKVKNQ 357 >gi|52080178|ref|YP_078969.1| ribosomal RNA large subunit methyltransferase N [Bacillus licheniformis ATCC 14580] gi|52785555|ref|YP_091384.1| YloN [Bacillus licheniformis ATCC 14580] gi|319646042|ref|ZP_08000272.1| ribosomal RNA large subunit methyltransferase N [Bacillus sp. BT1B_CT2] gi|81385601|sp|Q65JS3|RLMN_BACLD RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|52003389|gb|AAU23331.1| Conserved hypothetical protein [Bacillus licheniformis ATCC 14580] gi|52348057|gb|AAU40691.1| YloN [Bacillus licheniformis ATCC 14580] gi|317391792|gb|EFV72589.1| ribosomal RNA large subunit methyltransferase N [Bacillus sp. BT1B_CT2] Length = 361 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 126/368 (34%), Positives = 202/368 (54%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 ++ S+ EEL+ L + G R +QI++W+Y + + F+ M+++S+E+R L Sbjct: 14 ERPSIYSFEIEELKSWLSENG----EKPFRAAQIFEWLYEKRVTSFEKMTNLSKELRTKL 69 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 N+HF + + ++ S DGT K+L IETV + + ++CV++QVGC Sbjct: 70 NEHFVLTTLKTAVKQTSQDGTMKFLFELHD-----GYTIETVLMRHEYGNSVCVTTQVGC 124 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S+IV+ Sbjct: 125 RIGCTFCASTLGGLKRNLEAGEIVAQVVKVQQALDE--------------TDERVSSIVI 170 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP NF + L I + GL+ R IT+STSG +P I +E + + AISL Sbjct: 171 MGIGEPFDNFQEMLAFLKIVNHDKGLNIGARHITVSTSGIIPKIYEFADEKLQINFAISL 230 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA + ++R+ L+PINR Y L L+ A +Y + R+TFEY + G+ND A L Sbjct: 231 HAPNTEIRSRLMPINRAYKLPDLMKAVDYYIKKTGR-RVTFEYGLFGGVNDQVEHAEELA 289 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LKGI +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG Sbjct: 290 ELLKGIKCHVNLIPVNYVPERDYVRTPKEQIFAFEKTLKSHGVNVTIRREQGHDIDAACG 349 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 350 QLRAKERQ 357 >gi|118497539|ref|YP_898589.1| radical SAM superfamily protein [Francisella tularensis subsp. novicida U112] gi|195536235|ref|ZP_03079242.1| radical SAM enzyme, Cfr family [Francisella tularensis subsp. novicida FTE] gi|208779338|ref|ZP_03246684.1| radical SAM enzyme, Cfr family [Francisella novicida FTG] gi|254372900|ref|ZP_04988389.1| hypothetical protein FTCG_00471 [Francisella tularensis subsp. novicida GA99-3549] gi|205829766|sp|A0Q6H0|RLMN_FRATN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|118423445|gb|ABK89835.1| radical SAM superfamily protein [Francisella novicida U112] gi|151570627|gb|EDN36281.1| hypothetical protein FTCG_00471 [Francisella novicida GA99-3549] gi|194372712|gb|EDX27423.1| radical SAM enzyme, Cfr family [Francisella tularensis subsp. novicida FTE] gi|208745138|gb|EDZ91436.1| radical SAM enzyme, Cfr family [Francisella novicida FTG] Length = 370 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 158/382 (41%), Positives = 229/382 (59%), Gaps = 22/382 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K +L+G+ ++ +E+ + IG + Q++KWI+ +G+ DF M+D+ + +RH L Sbjct: 4 DKVNLLGLNQKAIEDFFISIG----EKKFHARQVFKWIHKKGVIDFDAMTDLGKNLRHKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I P++V K S DGT KWL+ G +ETV+IPE+ RGTLCVSSQVGC Sbjct: 60 KEKAQITIPKVVFSKASKDGTHKWLIDV------GGSAVETVFIPEEGRGTLCVSSQVGC 113 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L CSFC TG Q RNL+A E++ Q+ +A L G D ++NIVM Sbjct: 114 TLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFT----------VTNIVM 163 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NF+NV ++ I D + S+R++TLSTSG VP I + E+ GV LA+SLH Sbjct: 164 MGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLH 223 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++ LRN +VPIN+KY ++ L++AC+ Y + ITFEY +++ +ND+ DA L+ Sbjct: 224 APNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEVNDNLSDAEELVA 283 Query: 305 ILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK PAKINLIPFNP+PG Y I F E ++ +G+ + +R RG DI AAC Sbjct: 284 LLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAAC 343 Query: 363 GQLKSLSKRIPKVPRQEMQITG 384 GQL ++ ++ G Sbjct: 344 GQLAGDVMDKTNRKQRYLKKLG 365 >gi|89095332|ref|ZP_01168250.1| hypothetical protein MED92_00580 [Oceanospirillum sp. MED92] gi|89080407|gb|EAR59661.1| hypothetical protein MED92_00580 [Oceanospirillum sp. MED92] Length = 371 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 158/375 (42%), Positives = 224/375 (59%), Gaps = 24/375 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+G+ ++E +IG + R +Q+ KWI+ G F M++IS+ +R L Sbjct: 6 KKVNLLGLSPAKMEAFFDEIG----EKKFRATQVLKWIHQLGATSFDEMTNISKALRAKL 61 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PE++ EK S DGTRKW++R + +E V IP+ R TLCVSSQVGC Sbjct: 62 EEVAEIREPEVLLEKTSKDGTRKWVIRTDS-----GSSVEAVLIPDGERKTLCVSSQVGC 116 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 SL CSFC TG Q NLT EI+ Q+ +A G++ R +SN+V+ Sbjct: 117 SLDCSFCSTGKQGFNSNLTTAEIIGQLRIAIRSYGEYNTTSQ----------RVVSNVVL 166 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV ++++ + SKRR+TLST+G VP I ++ E V LAISLH Sbjct: 167 MGMGEPLMNFDNVVDAITLMMEDNAYCLSKRRVTLSTAGVVPAIDKLREVTDVSLAISLH 226 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALNLI 303 A ++DLR+ILVPIN++YP++ L+ AC Y N +R IT EY ++ G+ND P A L+ Sbjct: 227 APNDDLRDILVPINKRYPIKELVAACNRYLDNLNDKRVITVEYTLINGVNDKPEHAKQLL 286 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 KIL+ +P+K+N+IPFNP+P Y ++ I+ F E I G + +R RG +I AACG Sbjct: 287 KILRRMPSKLNIIPFNPFPNSGYERPSEERILAFKEIIVHGGIVTTVRRTRGDEIDAACG 346 Query: 364 QL----KSLSKRIPK 374 QL ++R K Sbjct: 347 QLVGQVADRTRRSQK 361 >gi|294625018|ref|ZP_06703668.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600693|gb|EFF44780.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 405 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 162/383 (42%), Positives = 225/383 (58%), Gaps = 28/383 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K++L+ + RE LE R R Q+ KWI+ R + DF M+D+ + +R L Sbjct: 25 RKQNLLDLDREGLERFFAD---TLGEARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAKL 81 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +QH ++ P +V +K S DGT KWLL G IETVYIP+K RGTLCVSSQVGC Sbjct: 82 HQHAEVLVPNVVFDKPSADGTHKWLLAM---GTDGKNAIETVYIPDKGRGTLCVSSQVGC 138 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 L C+FC T TQ RNLT EI+ QV +A LG+ +P R+++N+VM Sbjct: 139 GLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVVM 187 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SLH Sbjct: 188 MGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLH 247 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALNLI 303 A ++ LR LVP+N+KYP+ L+++C Y +TFEY ++KGIND P A L Sbjct: 248 AANDALRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLA 307 Query: 304 KILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 ++++ K+NLIPFNP+PG Y S + +I F + + + + +R RG Sbjct: 308 RLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRG 367 Query: 356 LDILAACGQLKSLSKRIPKVPRQ 378 DI AACGQLK + + RQ Sbjct: 368 DDIDAACGQLKGQV--MDRTRRQ 388 >gi|315123120|ref|YP_004065126.1| hypothetical protein PSM_B0177 [Pseudoalteromonas sp. SM9913] gi|315016880|gb|ADT70217.1| hypothetical protein PSM_B0177 [Pseudoalteromonas sp. SM9913] Length = 376 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 165/383 (43%), Positives = 226/383 (59%), Gaps = 21/383 (5%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M KK +L+ + R+ + E + G R Q+ KWIY G+ +F MS++++++ Sbjct: 1 MTEQKKINLLDLNRDAMRELFVSFG----EKPFRGDQVMKWIYHFGVDNFDEMSNVNKKL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 + L I+ PEI + + DGT K+ L G E+E V+IPEK R TLCVSS Sbjct: 57 KEKLKNECEIVAPEISVRQQASDGTIKYALVLE-----GGQEVEAVWIPEKDRATLCVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC+L C+FC T Q RNL EI+ QV +G + S R ++ Sbjct: 112 QVGCALECTFCSTAQQGFNRNLKVSEIIGQVWRVAKDIG----------LDGNSEKRPVT 161 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N NV ++ + D G SKRR+TLSTSG VP + + E+I V LA Sbjct: 162 NVVMMGMGEPLLNVKNVVPAMELMMDDWGFGLSKRRVTLSTSGVVPALDLLKEKIDVALA 221 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDA 299 ISLHA N LR+ILVPIN+KYP+E + ACR Y S A + +T EYVML G+NDS A Sbjct: 222 ISLHAPDNALRDILVPINKKYPIEEFLAACRRYIDGSKANKDVTIEYVMLNGVNDSTDQA 281 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L+K LKG P+K+NLIPFNP+PG EY S I FS+ ++ +G + +R RG DI Sbjct: 282 HELVKTLKGTPSKVNLIPFNPFPGNEYTRSSNSRIDRFSKVLQAAGITCIVRRTRGDDID 341 Query: 360 AACGQLKS-LSKRIPKVPRQEMQ 381 AACGQL + R ++ +++M+ Sbjct: 342 AACGQLAGDVVDRTKRMAKKKMR 364 >gi|21231430|ref|NP_637347.1| hypothetical protein XCC1982 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768516|ref|YP_243278.1| hypothetical protein XC_2202 [Xanthomonas campestris pv. campestris str. 8004] gi|81305512|sp|Q4UUL5|RLMN_XANC8 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|81794005|sp|Q8P984|RLMN_XANCP RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|21113100|gb|AAM41271.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573848|gb|AAY49258.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] Length = 401 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 162/382 (42%), Positives = 224/382 (58%), Gaps = 28/382 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K++L+ + RE LE R R Q+ KWI+ R + DF M+D+ + +R L+ Sbjct: 22 KQNLLDLDREGLEHFFAD---TLGEARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAKLH 78 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 QH ++ P +V +K S DGT KWLL G IETVYIP+K RGTLCVSSQVGC Sbjct: 79 QHAEVLVPNVVFDKPSTDGTHKWLLAM---GTDGKNAIETVYIPDKGRGTLCVSSQVGCG 135 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC T TQ RNLT EI+ QV +A LG+ +P R+++N+VMM Sbjct: 136 LNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVVMM 184 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SLHA Sbjct: 185 GMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLATESDVSLAVSLHA 244 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALNLIK 304 ++ LR LVP+N+KYP+ L+++C Y +TFEY ++KGIND P A L + Sbjct: 245 ANDVLRESLVPLNKKYPIAELMESCARYLRGNKKRDSVTFEYTLMKGINDQPEHARQLAR 304 Query: 305 ILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 +++ K+NLIPFNP+PG Y S + +I F + + + + +R RG Sbjct: 305 LMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRGD 364 Query: 357 DILAACGQLKSLSKRIPKVPRQ 378 DI AACGQLK + + RQ Sbjct: 365 DIDAACGQLKGQV--MDRTRRQ 384 >gi|319786998|ref|YP_004146473.1| radical SAM enzyme, Cfr family [Pseudoxanthomonas suwonensis 11-1] gi|317465510|gb|ADV27242.1| radical SAM enzyme, Cfr family [Pseudoxanthomonas suwonensis 11-1] Length = 418 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 164/382 (42%), Positives = 224/382 (58%), Gaps = 28/382 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K++L+ + RE LE + R R Q+ KWI+ R + DF M+D+ + +R L+ Sbjct: 35 KQNLLELDREGLERFFEE---TLGEKRYRAHQVMKWIHHRYVTDFDQMTDLGKALRAKLH 91 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 H ++ P +V +K S DGT KWLL A G IETVYIP+K RGTLCVSSQVGC Sbjct: 92 AHAEVVVPNVVFDKPSADGTHKWLLAMGA---DGKNAIETVYIPDKGRGTLCVSSQVGCG 148 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC T TQ RNLT EI+ QV +A LG+ +P R+++N+VMM Sbjct: 149 LNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVVMM 197 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SLHA Sbjct: 198 GMGEPLMNFDNVVRAMSVMRDDLGYGLANKRVTLSTSGLVPQIDRLSVESDVSLAVSLHA 257 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGL-SNARRITFEYVMLKGINDSPRDALNLIK 304 ++ LR LVP+NRKYP+ L+ +C Y +TFEY ++KG+ND P A L + Sbjct: 258 PNDALRETLVPLNRKYPIAELMASCARYLRANKKRESVTFEYTLMKGVNDQPEHARQLAR 317 Query: 305 ILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 +++ K+NLIPFNP+PG Y SD+ I F + + S + +R RG Sbjct: 318 LMRQFDNAVQARDSGKVNLIPFNPFPGTRYERSDEATIRAFQKILLDSQVLTMVRRTRGD 377 Query: 357 DILAACGQLKSLSKRIPKVPRQ 378 DI AACGQLK + + RQ Sbjct: 378 DIDAACGQLKGQV--MDRTRRQ 397 >gi|149190092|ref|ZP_01868369.1| hypothetical protein VSAK1_12070 [Vibrio shilonii AK1] gi|148836122|gb|EDL53082.1| hypothetical protein VSAK1_12070 [Vibrio shilonii AK1] Length = 374 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 149/382 (39%), Positives = 210/382 (54%), Gaps = 21/382 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ R+ + + + R Q+ KWIY G DF+ M++I++++R L Sbjct: 4 QKVNLLDFDRKGMRKFFQE---ELGEKAFRADQVMKWIYHFGCDDFEKMTNINKKLREKL 60 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I P + + + S DGT KW +R ++ETVYIP+ R TLCVSSQVGC Sbjct: 61 IRLAEIKAPTVSEAQHSSDGTIKWAMRVGD------QDVETVYIPDDDRATLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNL EI+ QV A +G + + R I+N+VM Sbjct: 115 ALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREVG----------LEKETGRRPITNVVM 164 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ EI V LAISLH Sbjct: 165 MGMGEPLLNMKNLMPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGEIDVALAISLH 224 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNL 302 A ++ LR+ ++PIN ++ +E + + R Y SNA R +T EYV+L +ND A L Sbjct: 225 APNDKLRSEIMPINDRWDIEDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHAREL 284 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LK PAKINLIPFNP+PG Y I F + + + Y+ +R RG DI AAC Sbjct: 285 AELLKDTPAKINLIPFNPYPGSPYKKPSNSRIDRFMKTLMQYDYTVTVRKTRGDDIDAAC 344 Query: 363 GQLKSLSKRIPKVPRQEMQITG 384 GQL K +Q + G Sbjct: 345 GQLVGDVIDRTKRTKQLAEQKG 366 >gi|21242760|ref|NP_642342.1| hypothetical protein XAC2016 [Xanthomonas axonopodis pv. citri str. 306] gi|21108240|gb|AAM36878.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 405 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 163/383 (42%), Positives = 225/383 (58%), Gaps = 28/383 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K++L+ + RE LE R R Q+ KWI+ R + DF M+D+ + +R L Sbjct: 25 RKQNLLDLDREGLERFFAD---TLGEARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAKL 81 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +QH ++ P +V +K S DGT KWLL G IETVYIP+K RGTLCVSSQVGC Sbjct: 82 HQHAEVLVPNVVFDKPSADGTHKWLLAM---GTDGKNAIETVYIPDKGRGTLCVSSQVGC 138 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 L CSFC T TQ RNLT EI+ QV +A LG+ +P R+++N+VM Sbjct: 139 GLNCSFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVVM 187 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SLH Sbjct: 188 MGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLH 247 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALNLI 303 A ++ LR LVP+N+KYP+ L+++C Y +TFEY ++KGIND P A L Sbjct: 248 AANDALRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLA 307 Query: 304 KILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 ++++ K+NLIPFNP+PG Y S + +I F + + + + +R RG Sbjct: 308 RLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRG 367 Query: 356 LDILAACGQLKSLSKRIPKVPRQ 378 DI AACGQLK + + RQ Sbjct: 368 DDIDAACGQLKGQV--MDRTRRQ 388 >gi|228940952|ref|ZP_04103511.1| Radical SAM family enzyme [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973881|ref|ZP_04134457.1| Radical SAM family enzyme [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980471|ref|ZP_04140781.1| Radical SAM family enzyme [Bacillus thuringiensis Bt407] gi|228779291|gb|EEM27548.1| Radical SAM family enzyme [Bacillus thuringiensis Bt407] gi|228785906|gb|EEM33909.1| Radical SAM family enzyme [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818788|gb|EEM64854.1| Radical SAM family enzyme [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326941633|gb|AEA17529.1| radical SAM protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 362 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 126/368 (34%), Positives = 206/368 (55%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++S+ +R L Sbjct: 15 KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I + ++ S DGT K+L + IETV + + ++CV++QVGC Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQLYD-----GYSIETVLMRHEYGNSICVTTQVGC 125 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+DN+ L I + GL R +T+STSG +P I + EE + + AISL Sbjct: 172 MGIGEPFDNYDNLMGFLRITNHEKGLHIGARHMTVSTSGIIPKIYKFAEEELQINFAISL 231 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++LR+ L+PINR Y L L++A ++Y + RITFEY + G ND A L Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRTGR-RITFEYGLFGGENDQVEHAEELA 290 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 351 QLRAKERK 358 >gi|257087248|ref|ZP_05581609.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|256995278|gb|EEU82580.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|315026051|gb|EFT37983.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX2137] Length = 357 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 134/379 (35%), Positives = 218/379 (57%), Gaps = 26/379 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++KES+ G+ RE+L + L G + R +Q+W+W+Y + + F MS+IS+ + L Sbjct: 1 MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNISKSLMTL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L ++FS+ + V + + DGT K+L P + + IETV + ++ ++CV++QVG Sbjct: 57 LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+LTA EI+ Q++ + + + ++S++V Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYFDE------------RGLDERVSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+ NV L +D GL+ R IT+STSG VP I + + V LAIS Sbjct: 160 VMGIGEPFDNYANVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N++R ++ INR +P+E L+ A Y +N R+TFEY+ML +ND P A L Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMAAIDEYIQKTNR-RVTFEYIMLSQVNDRPEHAQQL 278 Query: 303 IKILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 +L+ + +NLIP+NP + Y S ++ ++ F + +K++G + IR G DI Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338 Query: 360 AACGQLKSLSKRIPKVPRQ 378 AACGQL+S + KV Q Sbjct: 339 AACGQLRSKQMKKEKVKNQ 357 >gi|256619523|ref|ZP_05476369.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|307275985|ref|ZP_07557118.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX2134] gi|256599050|gb|EEU18226.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|306507315|gb|EFM76452.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX2134] gi|315146175|gb|EFT90191.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX4244] Length = 357 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 134/379 (35%), Positives = 218/379 (57%), Gaps = 26/379 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++KES+ G+ RE+L + L G + R +Q+W+W+Y + + F MS+IS+ + L Sbjct: 1 MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNISKSLMTL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L ++FS+ + V + + DGT K+L P + + IETV + ++ ++CV++QVG Sbjct: 57 LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+LTA EI+ Q++ + + + ++S++V Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYFDE------------RGLDERVSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+ NV L +D GL+ R IT+STSG VP I + + V LAIS Sbjct: 160 VMGIGEPFDNYVNVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N++R ++ INR +P+E L+ A Y +N R+TFEY+ML +ND P A L Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKTNR-RVTFEYIMLSQVNDRPEHAQQL 278 Query: 303 IKILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 +L+ + +NLIP+NP + Y S ++ ++ F + +K++G + IR G DI Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338 Query: 360 AACGQLKSLSKRIPKVPRQ 378 AACGQL+S + KV Q Sbjct: 339 AACGQLRSKQMKKEKVKNQ 357 >gi|262274790|ref|ZP_06052601.1| ribosomal RNA large subunit methyltransferase N [Grimontia hollisae CIP 101886] gi|262221353|gb|EEY72667.1| ribosomal RNA large subunit methyltransferase N [Grimontia hollisae CIP 101886] Length = 373 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 150/383 (39%), Positives = 208/383 (54%), Gaps = 21/383 (5%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 +K +L+ R+ L + R QI KW+Y G+ DF MS+I++ +R Sbjct: 2 TTEKINLLDFDRQALRAFFAE---ELGEKAFRADQIMKWMYHFGVDDFDQMSNINKVLRE 58 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L I PE+ + S DGT KW +R G ++ETVYIPE R TLCVSSQV Sbjct: 59 KLKARCEIRAPEVSAAQYSADGTIKWAMRV------GNQDVETVYIPEDDRATLCVSSQV 112 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L C FC T Q RNL EI+ QV A +G + + R I+N+ Sbjct: 113 GCALDCKFCSTAQQGFNRNLKVSEIIGQVWRAAKEIG----------VEKETGRRPITNV 162 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL N N+ +L++ D +G SKRR+T+STSG V + ++ +I V LAIS Sbjct: 163 VMMGMGEPLLNMKNLIPALNLMLDDLGYGLSKRRVTVSTSGVVSGLEQMIGKIDVALAIS 222 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDAL 300 LHA +++LR+ ++PIN +Y +E + + R Y SN R+T EY++L +ND A Sbjct: 223 LHAPNDELRSQIMPINDRYDIETFLASVRRYIASSNANRGRVTVEYILLDHVNDDMEHAR 282 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L ++LK PAKINLIPFNP+PG Y I F + + + Y+ +R RG DI A Sbjct: 283 QLAELLKDTPAKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYDYTVIVRKTRGDDIDA 342 Query: 361 ACGQLKSLSKRIPKVPRQEMQIT 383 ACGQL K + + I Sbjct: 343 ACGQLVGDVIDRTKRTQNRLNIE 365 >gi|222151049|ref|YP_002560203.1| hypothetical protein MCCL_0800 [Macrococcus caseolyticus JCSC5402] gi|222120172|dbj|BAH17507.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 363 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 129/372 (34%), Positives = 207/372 (55%), Gaps = 25/372 (6%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M K S+ + EL+E L G R QI+ W+YV+ + F+ MS++S+E+ Sbjct: 12 MPNFDKPSIYSLQLGELKEWLATHG----QQSFRAKQIYDWLYVKRVNSFEEMSNLSKEL 67 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R +L +F++ + V ++ S DGT K+L IETV + ++CV++ Sbjct: 68 RKVLEDNFTMTTLKTVVKQESKDGTIKFLFELQD-----GYTIETVLMRHDYGNSVCVTT 122 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC + C+FC + L RNL A EI+ QVL + L + V ++S Sbjct: 123 QVGCRIGCTFCASTLGGLKRNLEAGEIVAQVLNVQKALDE--------------VEERVS 168 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239 ++V+MG+GEP N++ + L + + GL+ R IT+STSG +P I EE+ + Sbjct: 169 HVVIMGIGEPFENYEEMMDFLKVINHDDGLNIGARHITVSTSGIIPRIYDFADEELQINF 228 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH +ND+R+ L+PINR Y LE L+++ +Y + RITFEY + G+ND A Sbjct: 229 ALSLHGPNNDIRSRLMPINRAYDLEKLMESIEYYVNKTGR-RITFEYGLFGGVNDQVHHA 287 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L +++K + +NLIP N P +Y+ + ++DI F + +KR+G ++ IR G DI Sbjct: 288 KELAQLIKHLNCHVNLIPVNHVPERDYVRTPKEDIFKFEKELKRNGINATIRREHGSDID 347 Query: 360 AACGQLKSLSKR 371 AACGQL++ ++ Sbjct: 348 AACGQLRAKERQ 359 >gi|289551002|ref|YP_003471906.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus lugdunensis HKU09-01] gi|289180534|gb|ADC87779.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus lugdunensis HKU09-01] Length = 364 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 128/370 (34%), Positives = 207/370 (55%), Gaps = 25/370 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K+S+ + +E+++ L++ G + R QI++W+Y + + F+ M+++S+++R LL Sbjct: 17 DKQSIYSLRFDEMQQWLVEQG----QQKFRAKQIYEWLYQKRVNSFEEMTNLSKDLRKLL 72 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 HF + V ++ S DGT K+L IETV + ++CV++QVGC Sbjct: 73 ADHFVMTTLTTVVKQESKDGTIKFLFELQD-----GYTIETVLMRHDYGNSVCVTTQVGC 127 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QVL + + + ++S IV+ Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQK--------------ALDATEERVSQIVI 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+D + L I +D L+ R IT+STSG VP I +E I + A+SL Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIVPRIYDFADEGIQINFAVSL 233 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +D+R+ L+PINR Y ++ L++A R+Y +N RITFEY + G+ND A L Sbjct: 234 HAAKDDVRSKLMPINRAYNVDKLMEAIRYYQQKTNR-RITFEYGLFGGVNDQLEHARELA 292 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++K + +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AACG Sbjct: 293 HLIKNLNCHVNLIPVNHVPERNYVKTSKDDIFKFEKELKRLGVNATIRREQGSDIDAACG 352 Query: 364 QLKSLSKRIP 373 QL++ +++ Sbjct: 353 QLRAKERQVE 362 >gi|160871646|ref|ZP_02061778.1| radical SAM enzyme, Cfr family [Rickettsiella grylli] gi|159120445|gb|EDP45783.1| radical SAM enzyme, Cfr family [Rickettsiella grylli] Length = 372 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 179/381 (46%), Positives = 227/381 (59%), Gaps = 25/381 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++L+ + E+E ++G R Q KWI+ GI D MS+ S+ +R L Sbjct: 6 KNLLDYDKVEMELFFQELG----EKSFRAQQALKWIHQEGITDIDKMSNFSKSLRSRLKT 61 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I PEI+ EK S DGT+KWLLR +ETV+IPE+ RGTLCVSSQVGC+L Sbjct: 62 IAQIDLPEIIIEKKSEDGTKKWLLRLTD-----ANCVETVFIPERGRGTLCVSSQVGCAL 116 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 CSFC T Q RNLT EI+ QV LA L D +SNIVMMG Sbjct: 117 NCSFCSTAQQGFNRNLTVAEIIGQVWLAVRCLSRDSLRHD----------HTVSNIVMMG 166 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL NFD+V K++++ D G FSKRR+TLSTSG VP + R+ + V LAISLHA Sbjct: 167 MGEPLLNFDSVVKAMNLMMDDFGYGFSKRRVTLSTSGVVPALRRLSKASEVSLAISLHAP 226 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 +++LR+ LVPIN+KYPL L++ CR+Y + RR+T EYVML+GIND P A LIKIL Sbjct: 227 NDELRDRLVPINKKYPLSELLEVCRNYFRSEHRRRVTMEYVMLEGINDQPEHARQLIKIL 286 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL- 365 +GIP KINLIPFNP+P Y S Q I F + ++G ++ R RG DI AACGQL Sbjct: 287 EGIPVKINLIPFNPFPFARYRRSSQITIERFKSILVKAGLNTITRKTRGEDIDAACGQLV 346 Query: 366 -----KSLSKRIPKVPRQEMQ 381 +S KR K +Q Sbjct: 347 GYVHDRSYHKRHQKAVSTSIQ 367 >gi|254374354|ref|ZP_04989836.1| hypothetical protein FTDG_00521 [Francisella novicida GA99-3548] gi|151572074|gb|EDN37728.1| hypothetical protein FTDG_00521 [Francisella novicida GA99-3548] Length = 370 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 159/382 (41%), Positives = 229/382 (59%), Gaps = 22/382 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K +L+G+ ++ +E+ + IG + Q++KWI+ +G+ DF M+D+ + +RH L Sbjct: 4 DKVNLLGLNQKAIEDFFISIG----EKKFHARQVFKWIHKKGVIDFDAMTDLGKNLRHKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I P++V K S DGT KWL+ G +ETV+IPE+ RGTLCVSSQVGC Sbjct: 60 KEKAQITIPKVVFSKASKDGTHKWLIDV------GGSAVETVFIPEEGRGTLCVSSQVGC 113 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L CSFC TG Q RNL+A E++ Q+ +A L G D ++NIVM Sbjct: 114 TLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFT----------VTNIVM 163 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NF+NV ++ I D + S+R++TLSTSG VP I + E+ GV LA+SLH Sbjct: 164 MGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLH 223 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++ LRN +VPIN+KY ++ L++AC+ Y + ITFEY +++ IND+ DA L+ Sbjct: 224 APNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEINDNLSDAEELVA 283 Query: 305 ILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK PAKINLIPFNP+PG Y I F E ++ +G+ + +R RG DI AAC Sbjct: 284 LLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAAC 343 Query: 363 GQLKSLSKRIPKVPRQEMQITG 384 GQL ++ ++ G Sbjct: 344 GQLAGDVMDKTNRKQRYLKKLG 365 >gi|15837061|ref|NP_297749.1| hypothetical protein XF0459 [Xylella fastidiosa 9a5c] gi|81623829|sp|Q9PG43|RLMN_XYLFA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|9105305|gb|AAF83269.1|AE003896_6 conserved hypothetical protein [Xylella fastidiosa 9a5c] Length = 406 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 159/383 (41%), Positives = 222/383 (57%), Gaps = 28/383 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K++L+ + RE LE + R R Q+ KWI+ R + DF+ M+D+ + +R L Sbjct: 26 RKQNLLELNREGLERFFENV---LGEKRYRAHQVMKWIHHRYVSDFEQMTDVGKALRARL 82 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + P +V +K S DGT KWLL IETVYIP+K RGTLCVSSQ+GC Sbjct: 83 QACAEVRVPCVVFDKHSADGTHKWLLAMD---TDSKNAIETVYIPDKGRGTLCVSSQIGC 139 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 L C+FC T TQ RNLT EI+ QV +A LG+ +P R+++N+VM Sbjct: 140 GLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVVM 188 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV +++S+ D +G S +R+TLSTSG VP I R+ E V LA+SLH Sbjct: 189 MGMGEPLMNFDNVVRAMSVMRDDLGYGLSNKRVTLSTSGLVPMIDRLSTESDVSLAVSLH 248 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGL-SNARRITFEYVMLKGINDSPRDALNLI 303 A ++ LR LVP+N+KYP+ L+ +C Y + +TFEY ++KG+ND A L+ Sbjct: 249 APNDKLREQLVPLNKKYPIAELMASCERYLSVNRKRDSVTFEYTLMKGVNDKQEHAHELV 308 Query: 304 KILKGIPA--------KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 K+++ K+NLIPFNP+PG Y S + DI F + + + + +R RG Sbjct: 309 KLMRQFDCAMQVKGAAKVNLIPFNPFPGTYYERSTEVDIRAFQKILLDAQILAMVRRTRG 368 Query: 356 LDILAACGQLKSLSKRIPKVPRQ 378 DI AACGQLK + + RQ Sbjct: 369 DDIDAACGQLKGQV--VDRTRRQ 389 >gi|315658497|ref|ZP_07911369.1| cfr family radical SAM enzyme [Staphylococcus lugdunensis M23590] gi|315496826|gb|EFU85149.1| cfr family radical SAM enzyme [Staphylococcus lugdunensis M23590] Length = 364 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 129/370 (34%), Positives = 207/370 (55%), Gaps = 25/370 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K+S+ + +E+++ L++ G + R QI++W+Y + + F+ M+++S+++R LL Sbjct: 17 DKQSIYSLRFDEMQQWLVEQG----QQKFRAKQIYEWLYQKRVNSFEEMTNLSKDLRKLL 72 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 HF + V ++ S DGT K+L IETV + ++CV++QVGC Sbjct: 73 ADHFVMTTLTTVVKQESKDGTIKFLFELQD-----GYTIETVLMRHDYGNSVCVTTQVGC 127 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QVL + + + ++S IV+ Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQK--------------ALDATEERVSQIVI 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISL 243 MG+GEP N+D + L I +D L+ R IT+STSG VP I EEI + A+SL Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIVPRIYDFADEEIQINFAVSL 233 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +D+R+ L+PINR Y ++ L++A R+Y +N RITFEY + G+ND A L Sbjct: 234 HAAKDDVRSKLMPINRAYNVDKLMEAIRYYQQKTNR-RITFEYGLFGGVNDQLEHARELA 292 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++K + +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AACG Sbjct: 293 HLIKNLNCHVNLIPVNHVPERNYVKTSKDDIFKFEKELKRLGVNATIRREQGSDIDAACG 352 Query: 364 QLKSLSKRIP 373 QL++ +++ Sbjct: 353 QLRAKERQVE 362 >gi|194014876|ref|ZP_03053493.1| radical SAM enzyme, Cfr family [Bacillus pumilus ATCC 7061] gi|194013902|gb|EDW23467.1| radical SAM enzyme, Cfr family [Bacillus pumilus ATCC 7061] Length = 360 Score = 438 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 122/366 (33%), Positives = 200/366 (54%), Gaps = 25/366 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 S+ E++E L + Q R +QI++W+Y + + F MS++S+++R L Sbjct: 15 PSIYSFELHEMKEWLKE----QDEKPFRAAQIFEWLYEKRVTSFDEMSNLSKDLREKLKD 70 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 F+I + V ++ S DGT K+L IETV + + ++CV++QVGC + Sbjct: 71 QFTITTLKTVIKQTSQDGTIKFLFELHD-----GYTIETVLMRHEYGNSVCVTTQVGCRI 125 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC + L RNL A EI+ QVL + L + ++S++V+MG Sbjct: 126 GCTFCASTLGGLKRNLEAGEIVAQVLKVQQALDE--------------TDERVSSVVIMG 171 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 +GEP NF+ + L I + GL+ R IT+STSG +P I + +E + + A+SLHA Sbjct: 172 IGEPFDNFEEMLAFLKIINHDHGLNIGARHITVSTSGIIPKIYQFADEQMQINFAVSLHA 231 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + ++R+ L+PIN+ Y L L++A +Y + R++FEY + G+ND A L + Sbjct: 232 PNTEIRSRLMPINKAYKLPKLMEAIEYYIQKTGR-RVSFEYGLFGGVNDQVHHAEELADL 290 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKGI +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACGQL Sbjct: 291 LKGIKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKERGVNVTIRREQGHDIDAACGQL 350 Query: 366 KSLSKR 371 ++ ++ Sbjct: 351 RAKERQ 356 >gi|156973378|ref|YP_001444285.1| hypothetical protein VIBHAR_01065 [Vibrio harveyi ATCC BAA-1116] gi|205829926|sp|A7MU39|RLMN_VIBHB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|156524972|gb|ABU70058.1| hypothetical protein VIBHAR_01065 [Vibrio harveyi ATCC BAA-1116] Length = 375 Score = 438 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 141/365 (38%), Positives = 203/365 (55%), Gaps = 21/365 (5%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 +K +L+ R+ + + R Q+ KWIY G+ DF M++I++++R Sbjct: 2 TTEKINLLDFDRKGMRQFFAD---ELGEKAFRADQVMKWIYHFGVDDFDNMTNINKKLRE 58 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L I P + + + S DGT KW ++ ++ETVYIPE R TLCVSSQV Sbjct: 59 KLQHKCEIKAPTVAEAQHSSDGTIKWAMKVGD------QDVETVYIPEDDRATLCVSSQV 112 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L C FC T Q RNL EI+ QV A +G + + R I+N+ Sbjct: 113 GCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREIG----------LQKETGRRPITNV 162 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ +I V LAIS Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAIS 222 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300 LHA +++LR+ ++PIN ++ ++ + + R Y SNA R +T EYV+L +ND A Sbjct: 223 LHAPNDELRSQIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHAR 282 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L +++K P KINLIPFNP+PG Y I F + + + ++ +R RG DI A Sbjct: 283 ELAELMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDA 342 Query: 361 ACGQL 365 ACGQL Sbjct: 343 ACGQL 347 >gi|325927620|ref|ZP_08188849.1| 23S rRNA m(2)A-2503 methyltransferase family [Xanthomonas perforans 91-118] gi|325541987|gb|EGD13500.1| 23S rRNA m(2)A-2503 methyltransferase family [Xanthomonas perforans 91-118] Length = 401 Score = 438 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 163/383 (42%), Positives = 226/383 (59%), Gaps = 28/383 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K++L+ + RE LE R R Q+ KWI+ R + DF M+D+ + +R L Sbjct: 21 RKQNLLDLDREGLERFFAD---TLGEARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAKL 77 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +QH ++ P +V +K S DGT KWLL A G IETVYIP+K RGTLCVSSQVGC Sbjct: 78 HQHAEVLVPNVVFDKPSADGTHKWLLAMGA---DGKNAIETVYIPDKGRGTLCVSSQVGC 134 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 L C+FC T TQ RNLT EI+ QV +A LG+ +P R+++N+VM Sbjct: 135 GLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVVM 183 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SLH Sbjct: 184 MGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLH 243 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALNLI 303 A ++ LR LVP+N+KYP+ L+++C Y +TFEY ++KGIND P A L Sbjct: 244 AANDTLRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLA 303 Query: 304 KILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 ++++ K+NLIPFNP+PG Y S + +I F + + + + +R RG Sbjct: 304 RLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRG 363 Query: 356 LDILAACGQLKSLSKRIPKVPRQ 378 DI AACGQLK + + RQ Sbjct: 364 DDIDAACGQLKGQV--MDRTRRQ 384 >gi|308069673|ref|YP_003871278.1| hypothetical protein PPE_02915 [Paenibacillus polymyxa E681] gi|305858952|gb|ADM70740.1| Conserved hypothetical protein [Paenibacillus polymyxa E681] Length = 346 Score = 438 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 125/365 (34%), Positives = 196/365 (53%), Gaps = 25/365 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K + + EEL++ G P R QI+ W+YV+ + DF M+++S+ +R L Sbjct: 2 KPFIYDLTLEELQDWAKNNGEPA----FRGGQIFDWLYVKRVNDFSEMTNLSKALREKLE 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + FS + + + S DGT K+L IETV + ++CV++QVGC Sbjct: 58 EQFSFVTLSEITKLESKDGTVKFLFGLHDD-----HAIETVIMRHNYGNSICVTTQVGCR 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC + L RNLTA EI QV+ A+ + + ++S+IV+M Sbjct: 113 IGCTFCASTLGGLKRNLTAGEITAQVVQAQKI--------------LDKTNERVSSIVIM 158 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G GEP N++ L GL+ +R IT+STSG VPNI + +E + LAIS+H Sbjct: 159 GSGEPFENYEATMTFLRTMVHEKGLNIGQRHITVSTSGIVPNIYKFADEDTQINLAISIH 218 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++ LR+ L+P+NR+YP + ++D+ R+Y + RI+FEY ++ G+ND A L Sbjct: 219 APNDALRSKLMPVNRRYPFKDVMDSLRYYLAKTGR-RISFEYALIGGVNDQAEHAEELAD 277 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK + +NLIP N P +Y+ + + DI F + G + IR +G DI AACGQ Sbjct: 278 VLKDMLCHVNLIPVNHVPERKYVRTSRSDIFNFQRILAEKGVNVTIRREQGHDIAAACGQ 337 Query: 365 LKSLS 369 L++ Sbjct: 338 LRAKH 342 >gi|289666007|ref|ZP_06487588.1| hypothetical protein XcampvN_23775 [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 401 Score = 438 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 162/383 (42%), Positives = 225/383 (58%), Gaps = 28/383 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K++L+ + RE LE R R Q+ KWI+ R + DF M+D+ + +R L Sbjct: 21 RKQNLLDLDREGLERFFAD---TLGEARYRAHQVMKWIHHRYVTDFDQMTDLGKPLRAKL 77 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +QH ++ P +V +K S DGT KWLL G IETVYIP+K RGTLCVSSQVGC Sbjct: 78 HQHAEVLVPNVVFDKPSTDGTHKWLLAM---GTDGKNAIETVYIPDKGRGTLCVSSQVGC 134 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 L C+FC T TQ RNLT EI+ QV +A LG+ +P R+++N+VM Sbjct: 135 GLNCTFCSTATQGFNRNLTTAEIVGQVWVAARHLGN-----------VPHQQRRLTNVVM 183 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SLH Sbjct: 184 MGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLH 243 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALNLI 303 A ++ LR LVP+N+KYP+ L+++C Y +TFEY ++KGIND P A L Sbjct: 244 AANDALRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLA 303 Query: 304 KILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 ++++ K+NLIPFNP+PG Y S + +I F + + + + +R RG Sbjct: 304 RLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRG 363 Query: 356 LDILAACGQLKSLSKRIPKVPRQ 378 DI AACGQLK + + RQ Sbjct: 364 DDIDAACGQLKGQV--MDRTRRQ 384 >gi|319941514|ref|ZP_08015841.1| ribosomal RNA large subunit methyltransferase N [Sutterella wadsworthensis 3_1_45B] gi|319804988|gb|EFW01827.1| ribosomal RNA large subunit methyltransferase N [Sutterella wadsworthensis 3_1_45B] Length = 400 Score = 438 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 152/384 (39%), Positives = 216/384 (56%), Gaps = 22/384 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + +L+ L+ IG R Q+ +W++ + DF M+D+++ R L Sbjct: 24 RVNLLDFDAAGLKAWCESIG----EKPFRARQLTRWVHRHLVCDFNEMTDLAKTFRAKLL 79 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE++ EK S DGTRKWL +G +E V+IPE RGTLC+SSQ GC+ Sbjct: 80 KLAEIRPPEVIHEKKSSDGTRKWLF-----AVGNGNAVEAVFIPEDDRGTLCISSQAGCA 134 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q RNLT EI+ Q+ A L G D R ISN+V+M Sbjct: 135 MGCLFCSTGKQGFNRNLTTAEIVGQLWTAERELCRDRGITDPN-------DRVISNVVLM 187 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N D V ++ I D G S+RR+T+STSG V I ++ E V LA+SLHA Sbjct: 188 GMGEPLQNLDAVIPAIKIFLDDDGYGLSRRRVTVSTSGLVRQIDKLAEAAPVALAVSLHA 247 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + LR+ L+PIN+K+PL L+ ACR Y ++ ITFEYVML GINDS DA +L + Sbjct: 248 ADDGLRDKLMPINKKHPLGDLMAACRRYLRVAPRDFITFEYVMLGGINDSLADADHLAAL 307 Query: 306 LK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++ +P K NLIPFNP+P + D++ ++ F + GY + +R RG DI AACG Sbjct: 308 VRREHVPCKFNLIPFNPFPQSDLEKPDREKVLAFCRRLNELGYVTTVRKTRGDDIDAACG 367 Query: 364 QL----KSLSKRIPKVPRQEMQIT 383 QL + ++R ++ +Q+ + Sbjct: 368 QLAGEVRDRTRRAERLAQQKAEAA 391 >gi|229031494|ref|ZP_04187494.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus AH1271] gi|228729783|gb|EEL80763.1| Ribosomal RNA large subunit methyltransferase N [Bacillus cereus AH1271] Length = 362 Score = 438 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 125/368 (33%), Positives = 204/368 (55%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S+ + E+++ L + G P + R QI+ W+Y + ++++ MS++S+ +R L Sbjct: 15 KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYDDMSNLSKGLRDKL 70 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I + ++ S DGT K+L + IETV + + ++CV++QVGC Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQLYD-----GYSIETVLMRHEYGNSICVTTQVGC 125 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+DN+ L I + G+ R +T+STSG VP I + EE + + AISL Sbjct: 172 MGIGEPFDNYDNLMSFLRIINHEKGIHIGARHMTVSTSGIVPKIYKFAEEDMQINFAISL 231 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ + +LR+ L+PINR Y L L++A ++Y + RITFEY + G ND A L Sbjct: 232 HSANTELRSKLMPINRAYKLPDLMEAVKYYVNKTGR-RITFEYGLFGGENDQVEQAEELA 290 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 351 QLRAKERK 358 >gi|147675306|ref|YP_001216242.1| hypothetical protein VC0395_A0286 [Vibrio cholerae O395] gi|262168795|ref|ZP_06036490.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae RC27] gi|205829925|sp|A5F3F8|RLMN_VIBC3 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|146317189|gb|ABQ21728.1| conserved hypothetical protein [Vibrio cholerae O395] gi|227012581|gb|ACP08791.1| conserved hypothetical protein [Vibrio cholerae O395] gi|262022913|gb|EEY41619.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae RC27] Length = 373 Score = 438 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 147/380 (38%), Positives = 206/380 (54%), Gaps = 22/380 (5%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 +K +L+ R+ L + R Q+ KWIY G DF M++I++++R Sbjct: 2 TTEKVNLLDFDRKGLRTFFAE---ELGEKAFRAEQVMKWIYHFGCDDFDQMNNINKQLRE 58 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L I P + + + S DGT KW +R ++ETVYIPE R TLCVSSQV Sbjct: 59 KLKAKCEIRAPYVSEAQHSADGTIKWAMRVGD------QDVETVYIPEDDRATLCVSSQV 112 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L C FC T Q RNL EI+ QV A +G + + R I+N+ Sbjct: 113 GCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAREIG----------LEKETGRRPITNV 162 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ +I V LAIS Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQIDVALAIS 222 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300 LHA ++ LR+ ++PIN ++ +E ++ R Y SNA R +T EYV+L +ND A Sbjct: 223 LHAPNDKLRSEIMPINDRWNIEAFLEVVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAH 282 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L ++LK P KINLIPFNP+PG Y I F + + + ++ IR RG DI A Sbjct: 283 ELAELLKRTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDA 342 Query: 361 ACGQL-KSLSKRIPKVPRQE 379 ACGQL + R + ++ Sbjct: 343 ACGQLVGDVIDRTKRTKAKQ 362 >gi|332678238|gb|AEE87367.1| radical SAM superfamily protein [Francisella cf. novicida Fx1] Length = 370 Score = 438 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 159/382 (41%), Positives = 229/382 (59%), Gaps = 22/382 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K +L+G+ ++ +E+ + IG + Q++KWI+ +G+ DF M+D+ + +RH L Sbjct: 4 DKVNLLGLNQKAIEDFFISIG----EKKFHARQVFKWIHKKGVIDFDAMTDLGKNLRHKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I P++V K S DGT KWL+ G +ETV+IPE+ RGTLCVSSQVGC Sbjct: 60 KEKAQITIPKVVFSKASKDGTHKWLIDV------GGSAVETVFIPEEGRGTLCVSSQVGC 113 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L CSFC TG Q RNL+A E++ Q+ +A L G D ++NIVM Sbjct: 114 TLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFT----------VTNIVM 163 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NF+NV ++ I D + S+R++TLSTSG VP I + E+ GV LA+SLH Sbjct: 164 MGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLH 223 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++ LRN +VPIN+KY ++ L++AC+ Y + ITFEY +++ IND+ DA L+ Sbjct: 224 APNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEINDNLSDAEQLVA 283 Query: 305 ILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK PAKINLIPFNP+PG Y I F E ++ +G+ + +R RG DI AAC Sbjct: 284 LLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAAC 343 Query: 363 GQLKSLSKRIPKVPRQEMQITG 384 GQL ++ ++ G Sbjct: 344 GQLAGDVMDKTNRKQRYLKKLG 365 >gi|229918582|ref|YP_002887228.1| ribosomal RNA large subunit methyltransferase N [Exiguobacterium sp. AT1b] gi|229470011|gb|ACQ71783.1| radical SAM enzyme, Cfr family [Exiguobacterium sp. AT1b] Length = 361 Score = 438 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 125/366 (34%), Positives = 195/366 (53%), Gaps = 25/366 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SL + ELE +++ G R Q++ W+YV+ + F M+++ + +R L Sbjct: 15 KPSLYSLTFPELEAWVIEAG----EKAFRAKQLYDWMYVKRVTTFDDMTNVPKALRDKLE 70 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + ++ S DGT K+L IETV + + ++CV++QVGC Sbjct: 71 ASFQLTTLKELVKQESQDGTIKFLFELQD-----GYSIETVLMRHEYGNSICVTTQVGCR 125 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC + L RNL A EI QVL + + + G ++ +IV+M Sbjct: 126 IGCTFCASTLGGLKRNLEAGEITAQVLDVQR--------------ALDATGERVDSIVVM 171 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+D + + L + GL+ R IT+STSG VP I + +E + + AISLH Sbjct: 172 GIGEPFDNYDELMRFLRTVNHDNGLNIGARHITVSTSGIVPKIYKFADEGMRINFAISLH 231 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A + +LR L+PINR + L+ L+DA R+Y S RITFEY + G+ND+ A L Sbjct: 232 APTTELRTKLMPINRAFDLDKLMDAVRYYTEKSGR-RITFEYGLFGGVNDTEEYAHLLAD 290 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKGI +NLIP N +Y+ + + I F + +K + IR +G DI AACGQ Sbjct: 291 LLKGIKCHVNLIPVNHVLERDYVRTPRAQIFAFEKVLKDRNVNVTIRREQGSDIDAACGQ 350 Query: 365 LKSLSK 370 L++ + Sbjct: 351 LRAKER 356 >gi|187931627|ref|YP_001891611.1| radical SAM enzyme domain, Cfr family [Francisella tularensis subsp. mediasiatica FSC147] gi|205829765|sp|B2SGH6|RLMN_FRATM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|187712536|gb|ACD30833.1| radical SAM enzyme domain, Cfr family [Francisella tularensis subsp. mediasiatica FSC147] Length = 370 Score = 438 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 158/382 (41%), Positives = 229/382 (59%), Gaps = 22/382 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K +L+G+ ++ +E+ + IG + Q++KWI+ +G+ DF M+D+ + +RH L Sbjct: 4 DKVNLLGLNQKAIEDFFISIG----EKKFHARQVFKWIHKKGVIDFDAMTDLGKNLRHKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I P++V K S DGT KWL+ G +ETV+IPE+ RGTLCVSSQVGC Sbjct: 60 KEKAQITIPKVVFSKASKDGTHKWLIDV------GGSAVETVFIPEEGRGTLCVSSQVGC 113 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L CSFC TG Q RNL+A E++ Q+ +A L G D ++NIVM Sbjct: 114 TLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFT----------VTNIVM 163 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NF+NV ++ I D + S+R++TLSTSG VP I + E+ GV LA+SLH Sbjct: 164 MGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLH 223 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++ LRN +VPIN+KY ++ L++AC+ Y + ITFEY +++ +ND+ DA L+ Sbjct: 224 APNDMLRNEIVPINKKYNIDELLEACKLYAQNGPHKHITFEYTLMEEVNDNLSDAEELVA 283 Query: 305 ILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK PAKINLIPFNP+PG Y I F E ++ +G+ + +R RG DI AAC Sbjct: 284 LLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAAC 343 Query: 363 GQLKSLSKRIPKVPRQEMQITG 384 GQL ++ ++ G Sbjct: 344 GQLAGDVMDKTNRKQRYLKKLG 365 >gi|228909689|ref|ZP_04073512.1| Radical SAM family enzyme [Bacillus thuringiensis IBL 200] gi|228849978|gb|EEM94809.1| Radical SAM family enzyme [Bacillus thuringiensis IBL 200] Length = 362 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 126/368 (34%), Positives = 206/368 (55%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++S+ +R L Sbjct: 15 KKPSIYSLQIHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I + ++ S DGT K+L + IETV + + ++CV++QVGC Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQLYD-----GYSIETVLMRHEYGNSICVTTQVGC 125 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+DN+ L I + GL R +T+STSG +P I + EE + + AISL Sbjct: 172 MGIGEPFDNYDNLMGFLRITNHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++LR+ L+PINR Y L L++A ++Y + RITFEY + G ND A L Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRTGR-RITFEYGLFGGENDQVEHAEELA 290 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 351 QLRAKERK 358 >gi|304404145|ref|ZP_07385807.1| radical SAM enzyme, Cfr family [Paenibacillus curdlanolyticus YK9] gi|304347123|gb|EFM12955.1| radical SAM enzyme, Cfr family [Paenibacillus curdlanolyticus YK9] Length = 356 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 124/365 (33%), Positives = 199/365 (54%), Gaps = 25/365 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K + EEL+ + G P R Q++ W+YV+ +R F MS++ + R L+ Sbjct: 10 KPFIYDYTLEELQAWVKDNGEPA----FRAGQLFDWLYVKRVRSFDEMSNLPKAFRQKLD 65 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F+ + + + S DGT K+L IETV + ++CV++QVGC Sbjct: 66 DQFAFVTLSEITKFESKDGTVKFLFGLHDN-----HAIETVVMRHNYGNSICVTTQVGCR 120 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC + L RNLTA EI+ QV+ A+ L + + ++S+IV+M Sbjct: 121 VGCTFCASTLGGLKRNLTAGEIVAQVVWAQQL--------------LDATNERVSSIVIM 166 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G GEP N++ L I GL+ +R IT+STSG VPNI + +E + LAIS+H Sbjct: 167 GTGEPFENYEPTMNFLRIMIHEKGLNIGQRHITVSTSGIVPNIYKFADENTQINLAISIH 226 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++ LR+ L+P+NR++P ++++ R+Y + RITFEY ++ G+ND P A L + Sbjct: 227 APNDALRSKLMPVNRRFPFNDVMESLRYYIAKTGR-RITFEYALIGGVNDRPEHAEELAQ 285 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L+G+ +NLIP N P Y+ + + DI F +++ ++ IR +G DI AACGQ Sbjct: 286 VLQGMLCHVNLIPVNHVPERNYVRTPRDDIFEFQRILEKHKINATIRREQGHDIAAACGQ 345 Query: 365 LKSLS 369 L++ Sbjct: 346 LRAKH 350 >gi|56476113|ref|YP_157702.1| Fe-S-cluster redox protein [Aromatoleum aromaticum EbN1] gi|81358332|sp|Q5P7B0|RLMN_AZOSE RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|56312156|emb|CAI06801.1| predicted Fe-S-cluster redox enzyme [Aromatoleum aromaticum EbN1] Length = 408 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 154/409 (37%), Positives = 215/409 (52%), Gaps = 43/409 (10%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 L +L+ + L + G R Q+ +W++ G DF M+D+++ +R Sbjct: 1 MLTPVNLLDFDVDGLVTWFAERG----EKPFRARQVMRWMHRFGETDFGNMTDVAKSLRA 56 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L + I P + + +S DGTRKWLL +G +E V+IPE +RGTLC+SSQ Sbjct: 57 KLAEEACIRAPRAIRDAVSVDGTRKWLL-----DVGSANAVEAVFIPETNRGTLCISSQA 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMV----------- 171 GC+L C+FC TG Q RNL+A EI+ Q+ LA LLG + Sbjct: 112 GCALDCAFCSTGKQGFNRNLSAAEIIGQLWLANRLLGGSASPAGSKDGDGGPDHASRATK 171 Query: 172 ----------------------IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209 GR ISN+VMMGMGEPL NFDNV +L + D Sbjct: 172 LDHRAADAKGVQSDSWRSSDPEEDHNGRVISNVVMMGMGEPLANFDNVVTALRLMLDDHA 231 Query: 210 LSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 S+RR+T+STSG VP + R+ +E V LA+SLHA + LR+ LVPINRKYPL L+ A Sbjct: 232 YGLSRRRVTVSTSGIVPAMDRLRDECPVALAVSLHAPDDALRDRLVPINRKYPLRELMAA 291 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 C+ Y + +TFEYVML +NDS A L+++++ +P K NLIPFNP+P + S Sbjct: 292 CQRYLERAPRDFVTFEYVMLDDVNDSDAHARALVELVRDVPCKFNLIPFNPFPNSGFDRS 351 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK-RIPKVPR 377 + I F+ + +G + R RG D+ AACGQL + R + R Sbjct: 352 PAERIRRFAAILIDAGIVTTTRKTRGDDVNAACGQLAGQVQDRSRRTVR 400 >gi|257422170|ref|ZP_05599160.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|257163994|gb|EEU93954.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|315157206|gb|EFU01223.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0043] Length = 357 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 134/379 (35%), Positives = 218/379 (57%), Gaps = 26/379 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++KES+ G+ RE+L + L G + R +Q+W+W+Y + + F MS+IS+ + L Sbjct: 1 MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVATFSEMSNISKSLMTL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L ++FS+ + V + + DGT K+L P + + IETV + ++ ++CV++QVG Sbjct: 57 LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+LTA EI+ Q++ + + + ++S++V Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYFDE------------RGLDERVSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+ NV L +D GL+ R IT+STSG VP I + + V LAIS Sbjct: 160 VMGIGEPFDNYANVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N++R ++ INR +P+E L+ A Y +N R+TFEY+ML +ND P A L Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKTNR-RVTFEYIMLSQVNDRPEHAQQL 278 Query: 303 IKILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 +L+ + +NLIP+NP + Y S ++ ++ F + +K++G + IR G DI Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338 Query: 360 AACGQLKSLSKRIPKVPRQ 378 AACGQL+S + KV Q Sbjct: 339 AACGQLRSKQMKKEKVKNQ 357 >gi|218899017|ref|YP_002447428.1| hypothetical protein BCG9842_B1280 [Bacillus cereus G9842] gi|228902368|ref|ZP_04066524.1| Radical SAM family enzyme [Bacillus thuringiensis IBL 4222] gi|228966814|ref|ZP_04127858.1| Radical SAM family enzyme [Bacillus thuringiensis serovar sotto str. T04001] gi|254807152|sp|B7IUM3|RLMN_BACC2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|218543794|gb|ACK96188.1| conserved hypothetical protein TIGR00048 [Bacillus cereus G9842] gi|228792913|gb|EEM40471.1| Radical SAM family enzyme [Bacillus thuringiensis serovar sotto str. T04001] gi|228857266|gb|EEN01770.1| Radical SAM family enzyme [Bacillus thuringiensis IBL 4222] Length = 362 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 126/368 (34%), Positives = 206/368 (55%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++S+ +R L Sbjct: 15 KKPSIYSLQIHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I + ++ S DGT K+L + IETV + + ++CV++QVGC Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQLYD-----GYSIETVLMRHEYGNSICVTTQVGC 125 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+DN+ L I + GL R +T+STSG +P I + EE + + AISL Sbjct: 172 MGIGEPFDNYDNLMGFLRITNHEKGLHIGARHMTVSTSGIIPKIYKFAEEELQINFAISL 231 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++LR+ L+PINR Y L L++A ++Y + RITFEY + G ND A L Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRTGR-RITFEYGLFGGENDQVEHAEELA 290 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 351 QLRAKERK 358 >gi|58582157|ref|YP_201173.1| hypothetical protein XOO2534 [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624049|ref|YP_451421.1| hypothetical protein XOO_2392 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|75435230|sp|Q5GZT3|RLMN_XANOR RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123521888|sp|Q2P2T0|RLMN_XANOM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829944|sp|B2SMB3|RLMN_XANOP RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|58426751|gb|AAW75788.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84367989|dbj|BAE69147.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 401 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 163/383 (42%), Positives = 225/383 (58%), Gaps = 28/383 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K++L+ + RE LE R R Q+ KWI+ R + DF M+D+ + +R L Sbjct: 21 RKQNLLDLDREGLERFFAD---TLGEARYRAHQVMKWIHHRYVTDFDHMTDLGKALRAKL 77 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +QH ++ P +V +K S DGT KWLL G IETVYIP+K RGTLCVSSQVGC Sbjct: 78 HQHAEVLVPNVVFDKPSTDGTHKWLLAM---GTDGKNAIETVYIPDKGRGTLCVSSQVGC 134 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 L CSFC T TQ RNLT EI+ QV +A LG+ +P R+++N+VM Sbjct: 135 GLNCSFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVVM 183 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SLH Sbjct: 184 MGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLH 243 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALNLI 303 A ++ LR LVP+N+KYP+ L+++C Y +TFEY ++KGIND P A L Sbjct: 244 AANDALRETLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLA 303 Query: 304 KILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 ++++ K+NLIPFNP+PG Y S + +I F + + + + +R RG Sbjct: 304 RLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTIVRRTRG 363 Query: 356 LDILAACGQLKSLSKRIPKVPRQ 378 DI AACGQLK + + RQ Sbjct: 364 DDIDAACGQLKGQV--MDRTRRQ 384 >gi|332184101|gb|AEE26355.1| radical SAM superfamily protein [Francisella cf. novicida 3523] Length = 370 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 158/382 (41%), Positives = 228/382 (59%), Gaps = 22/382 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K +L+G+ ++ +E+ + IG + Q++KWI+ +G+ DF M+D+ + +R+ L Sbjct: 4 DKVNLLGLNQKAIEDFFISIG----EKKFHARQVFKWIHKKGVIDFDAMTDLGKNLRNKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I P++V K S DGT KWL+ G +ETV+IPE+ RGTLCVSSQVGC Sbjct: 60 KEKTEITIPKVVFSKASKDGTHKWLIDV------GGSAVETVFIPEEGRGTLCVSSQVGC 113 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L CSFC TG Q RNL+A E++ Q+ +A L G D ++NIVM Sbjct: 114 TLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFT----------VTNIVM 163 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NF+NV ++ I D + S+R++TLSTSG VP I + E+ GV LA+SLH Sbjct: 164 MGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLH 223 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++ LRN +VPIN+KY ++ L+ AC+ Y + ITFEY +++ IND+ DA L+ Sbjct: 224 APNDMLRNEIVPINKKYNIDELLKACKLYAEKGPHKHITFEYTLMEEINDNLSDAEELVA 283 Query: 305 ILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK PAKINLIPFNP+PG Y I F E ++ +G+ + +R RG DI AAC Sbjct: 284 LLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAAC 343 Query: 363 GQLKSLSKRIPKVPRQEMQITG 384 GQL ++ ++ G Sbjct: 344 GQLAGDVMDKTNRKQRYLKKLG 365 >gi|90417489|ref|ZP_01225412.1| hypothetical protein GB2207_07422 [marine gamma proteobacterium HTCC2207] gi|90330730|gb|EAS46009.1| hypothetical protein GB2207_07422 [marine gamma proteobacterium HTCC2207] Length = 392 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 159/375 (42%), Positives = 222/375 (59%), Gaps = 22/375 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ + + L +G R R +QI KWI+ GI D M++IS+ +R L Sbjct: 19 KTNLLGLSASRIGDFLESLG----EKRFRGTQILKWIHQYGIDDLNEMTNISKSLRESLA 74 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++ PE+V + S DGTRKWL++ + G IE VYIPE+ RGTLCVSSQ+GC+ Sbjct: 75 DVAEVVMPEVVSCQDSVDGTRKWLIK-----VDGGSCIEMVYIPERDRGTLCVSSQIGCA 129 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q R+LT EI+ Q+ +A F R+++N+VMM Sbjct: 130 LDCSFCATGKQGFARDLTTAEIIGQLWIAAKSFDQFDTKNP----------RRVTNVVMM 179 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+NV ++S+ D SKRR+TLST+G VP + ++G+ V LAISLHA Sbjct: 180 GMGEPLMNFNNVVDAMSLMMDDNAYGLSKRRVTLSTAGVVPELDKLGDVSDVSLAISLHA 239 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGL--SNARRITFEYVMLKGINDSPRDALNLI 303 +++LRN LVPINRKYPL I + + Y N R++T EY ++ +ND A L Sbjct: 240 PNDELRNQLVPINRKYPLVDFIGSAKRYLDKMPDNRRKVTVEYTLMDRVNDRDEHAKELS 299 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +L+ +P KINLIPFNP+PG EY + + F + ++ GY+ +RT RG DI AACG Sbjct: 300 VLLRDLPCKINLIPFNPFPGSEYKKVTKVALNRFRDILQNDGYTVTVRTTRGDDIAAACG 359 Query: 364 QLKSL-SKRIPKVPR 377 QL + R + R Sbjct: 360 QLAGEVNDRTKRQER 374 >gi|229545365|ref|ZP_04434090.1| Fe-S-cluster redox enzyme [Enterococcus faecalis TX1322] gi|307295833|ref|ZP_07575665.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0411] gi|229309472|gb|EEN75459.1| Fe-S-cluster redox enzyme [Enterococcus faecalis TX1322] gi|306496164|gb|EFM65743.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0411] gi|315028571|gb|EFT40503.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX4000] Length = 357 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 134/379 (35%), Positives = 219/379 (57%), Gaps = 26/379 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++KES+ G+ RE+L + L G + R +Q+W+W+Y + + F MS+IS+ + L Sbjct: 1 MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNISKSLMTL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L ++FS+ + V + + DGT K+L P + + IETV + ++ ++CV++QVG Sbjct: 57 LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+LTA EI+ Q++ + + + ++S++V Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYFDE------------RGLDERVSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+ NV L +D GL+ R IT+STSG VP I + + V LAIS Sbjct: 160 VMGIGEPFDNYVNVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N++R +++ INR +P+E L+ A Y +N R+TFEY+ML +ND P A L Sbjct: 220 LHAPNNEVRTLIMRINRSFPIEKLMAAIDEYIEKTNR-RVTFEYIMLSQVNDRPEHAQQL 278 Query: 303 IKILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 +L+ + +NLIP+NP + Y S ++ ++ F + +K++G + IR G DI Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338 Query: 360 AACGQLKSLSKRIPKVPRQ 378 AACGQL+S + KV Q Sbjct: 339 AACGQLRSKQMKKEKVKNQ 357 >gi|269103278|ref|ZP_06155975.1| ribosomal RNA large subunit methyltransferase N [Photobacterium damselae subsp. damselae CIP 102761] gi|268163176|gb|EEZ41672.1| ribosomal RNA large subunit methyltransferase N [Photobacterium damselae subsp. damselae CIP 102761] Length = 372 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 150/381 (39%), Positives = 205/381 (53%), Gaps = 23/381 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ R+ + + + R QI KWIY G DF M++I++++R L Sbjct: 5 KVNLLDFDRKGMRKFFAE---ELEEKAFRADQIMKWIYHFGCDDFDQMTNINKKLREKLK 61 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I P + + S DGT KW +R ++ETVYIP+ R TLCVSSQVGC+ Sbjct: 62 VIAEIKAPTVSAAQYSKDGTIKWAMRVGD------QDVETVYIPDDDRATLCVSSQVGCA 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A +G + + R I+N+VMM Sbjct: 116 LECKFCSTAQQGFNRNLCVSEIIGQVWRAAKEIG----------VQKETGRRPITNVVMM 165 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ I V LAISLHA Sbjct: 166 GMGEPLLNMKNLLPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGNIDVALAISLHA 225 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNLI 303 +++LR+ ++PIN ++ +E +DA R Y +N R+T EYV+L IND A L Sbjct: 226 PTDELRSQIMPINNRWNIEEFLDAVRRYVNSTNANRGRVTVEYVLLDHINDDMEHARQLA 285 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+LK PAKINLIPFNP+PG Y I F + + + +R RG DI AACG Sbjct: 286 KVLKDTPAKINLIPFNPYPGSPYNKPSNSRIDRFMKTLMEYDITVTVRKTRGDDIDAACG 345 Query: 364 QLKSLSKRIPKVPRQEMQITG 384 QL I + R + + G Sbjct: 346 QLVGDV--IDRTKRTQAKQQG 364 >gi|323481183|gb|ADX80622.1| radical SAM superfamily protein [Enterococcus faecalis 62] Length = 357 Score = 438 bits (1126), Expect = e-121, Method: Composition-based stats. Identities = 134/379 (35%), Positives = 218/379 (57%), Gaps = 26/379 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++KES+ G+ RE+L + L G + R +Q+W+W+Y + + F MS+IS+ + L Sbjct: 1 MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNISKSLMTL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L ++FS+ + V + + DGT K+L P + + IETV + ++ ++CV++QVG Sbjct: 57 LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+LTA EI+ Q++ + + + ++S++V Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYFDE------------RGLDERVSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+ NV L +D GL+ R IT+STSG VP I + + V LAIS Sbjct: 160 VMGIGEPFDNYANVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N++R ++ INR +P+E L+ A Y +N R+TFEY+ML +ND P A L Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKNNR-RVTFEYIMLSQVNDRPEHAQQL 278 Query: 303 IKILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 +L+ + +NLIP+NP + Y S ++ ++ F + +K++G + IR G DI Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338 Query: 360 AACGQLKSLSKRIPKVPRQ 378 AACGQL+S + KV Q Sbjct: 339 AACGQLRSKQMKKEKVKNQ 357 >gi|166712105|ref|ZP_02243312.1| hypothetical protein Xoryp_11775 [Xanthomonas oryzae pv. oryzicola BLS256] Length = 393 Score = 438 bits (1126), Expect = e-121, Method: Composition-based stats. Identities = 163/383 (42%), Positives = 225/383 (58%), Gaps = 28/383 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K++L+ + RE LE R R Q+ KWI+ R + DF M+D+ + +R L Sbjct: 13 RKQNLLDLDREGLERFFAD---TLGEARYRAHQVMKWIHHRYVTDFDHMTDLGKALRAKL 69 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +QH ++ P +V +K S DGT KWLL G IETVYIP+K RGTLCVSSQVGC Sbjct: 70 HQHAEVLVPNVVFDKPSTDGTHKWLLAM---GTDGKNAIETVYIPDKGRGTLCVSSQVGC 126 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 L CSFC T TQ RNLT EI+ QV +A LG+ +P R+++N+VM Sbjct: 127 GLNCSFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVVM 175 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SLH Sbjct: 176 MGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLH 235 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALNLI 303 A ++ LR LVP+N+KYP+ L+++C Y +TFEY ++KGIND P A L Sbjct: 236 AANDALRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLA 295 Query: 304 KILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 ++++ K+NLIPFNP+PG Y S + +I F + + + + +R RG Sbjct: 296 RLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRG 355 Query: 356 LDILAACGQLKSLSKRIPKVPRQ 378 DI AACGQLK + + RQ Sbjct: 356 DDIDAACGQLKGQV--MDRTRRQ 376 >gi|257880074|ref|ZP_05659727.1| ribosomal RNA large subunit methyltransferase N [Enterococcus faecium 1,230,933] gi|257882309|ref|ZP_05661962.1| ribosomal RNA large subunit methyltransferase N [Enterococcus faecium 1,231,502] gi|257885503|ref|ZP_05665156.1| ribosomal RNA large subunit methyltransferase N [Enterococcus faecium 1,231,501] gi|257891165|ref|ZP_05670818.1| ribosomal RNA large subunit methyltransferase N [Enterococcus faecium 1,231,410] gi|257893979|ref|ZP_05673632.1| ribosomal RNA large subunit methyltransferase N [Enterococcus faecium 1,231,408] gi|258614592|ref|ZP_05712362.1| hypothetical protein EfaeD_02673 [Enterococcus faecium DO] gi|260560313|ref|ZP_05832489.1| ribosomal RNA large subunit methyltransferase N [Enterococcus faecium C68] gi|261208250|ref|ZP_05922923.1| ribosomal RNA large subunit methyltransferase N [Enterococcus faecium TC 6] gi|289565948|ref|ZP_06446387.1| cfr family radical SAM enzyme [Enterococcus faecium D344SRF] gi|293563079|ref|ZP_06677545.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1162] gi|293567506|ref|ZP_06678851.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1071] gi|294615994|ref|ZP_06695821.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1636] gi|294617653|ref|ZP_06697281.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1679] gi|294623617|ref|ZP_06702455.1| radical SAM enzyme, Cfr family [Enterococcus faecium U0317] gi|314940253|ref|ZP_07847426.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133a04] gi|314941689|ref|ZP_07848568.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133C] gi|314947667|ref|ZP_07851076.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0082] gi|314950654|ref|ZP_07853734.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133A] gi|314992479|ref|ZP_07857900.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133B] gi|314996873|ref|ZP_07861878.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133a01] gi|257814302|gb|EEV43060.1| ribosomal RNA large subunit methyltransferase N [Enterococcus faecium 1,230,933] gi|257817967|gb|EEV45295.1| ribosomal RNA large subunit methyltransferase N [Enterococcus faecium 1,231,502] gi|257821359|gb|EEV48489.1| ribosomal RNA large subunit methyltransferase N [Enterococcus faecium 1,231,501] gi|257827525|gb|EEV54151.1| ribosomal RNA large subunit methyltransferase N [Enterococcus faecium 1,231,410] gi|257830358|gb|EEV56965.1| ribosomal RNA large subunit methyltransferase N [Enterococcus faecium 1,231,408] gi|260073658|gb|EEW61984.1| ribosomal RNA large subunit methyltransferase N [Enterococcus faecium C68] gi|260077507|gb|EEW65225.1| ribosomal RNA large subunit methyltransferase N [Enterococcus faecium TC 6] gi|289162232|gb|EFD10093.1| cfr family radical SAM enzyme [Enterococcus faecium D344SRF] gi|291589749|gb|EFF21552.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1071] gi|291591180|gb|EFF22862.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1636] gi|291596117|gb|EFF27382.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1679] gi|291596943|gb|EFF28156.1| radical SAM enzyme, Cfr family [Enterococcus faecium U0317] gi|291604993|gb|EFF34461.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1162] gi|313589016|gb|EFR67861.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133a01] gi|313592939|gb|EFR71784.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133B] gi|313597201|gb|EFR76046.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133A] gi|313599461|gb|EFR78304.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133C] gi|313640573|gb|EFS05153.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133a04] gi|313645908|gb|EFS10488.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0082] Length = 355 Score = 438 bits (1126), Expect = e-121, Method: Composition-based stats. Identities = 133/376 (35%), Positives = 222/376 (59%), Gaps = 28/376 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K+S+ G+ EEL ++ G + R +Q+W+W+Y + + +F M+++S+++ Sbjct: 1 MEKQSIYGLTNEELINWFIENG----EKKFRAAQVWEWLYQKRVSNFTEMTNLSKQLIEK 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L++HF I + + + + DGT K+L P + + IETV + ++ ++CV++QVG Sbjct: 57 LSEHFIINPLKQMVVQEASDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+LTA EI+ Q+++ + + ++G ++S++V Sbjct: 112 CNIGCTFCASGLLKKNRDLTAGEIVAQIMMVQHYFDE------------RNLGERVSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+DNV L I +D+ GL+ R IT+STSG I + V LAIS Sbjct: 160 VMGIGEPFDNYDNVMDFLHIINDAKGLAIGARHITVSTSGLAHKIKEFANNGLQVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N++R ++ INR +P+E L++A Y +N RITFEY+ML +ND P A L Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMEAVDEYLEKTNR-RITFEYIMLNQVNDRPEHAQQL 278 Query: 303 IKILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 +LK A +NLIP+NP + Y S + D++ F + +K++G + IR G DI Sbjct: 279 ADLLKDKKKLAYVNLIPYNPVSEHDQYSRSPKADVLRFYDVLKKNGVNCVIRKEHGTDID 338 Query: 360 AACGQLKSLSKRIPKV 375 AACGQL+ SK++ K Sbjct: 339 AACGQLR--SKQMKKT 352 >gi|89072699|ref|ZP_01159264.1| hypothetical protein SKA34_19254 [Photobacterium sp. SKA34] gi|89051519|gb|EAR56973.1| hypothetical protein SKA34_19254 [Photobacterium sp. SKA34] Length = 373 Score = 438 bits (1126), Expect = e-121, Method: Composition-based stats. Identities = 150/386 (38%), Positives = 211/386 (54%), Gaps = 24/386 (6%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M + K +L+ R+ L + + R QI KWIY G DF M++I++++ Sbjct: 1 MTTV-KINLLDFDRKGLRKYFAE---ELNEKPFRADQIMKWIYHFGCDDFDQMTNINKKL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L + I P + + + S DGT KW +R ++ETVYIP++ R TLCVSS Sbjct: 57 REKLKRVAEIRAPHVSEAQYSTDGTIKWAMRVGD------QDVETVYIPDEDRATLCVSS 110 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC+L C FC T Q RNL EI+ QV A +G + + R I+ Sbjct: 111 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKEVG----------IQKDTGRRPIT 160 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 NIVMMGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ + I V LA Sbjct: 161 NIVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIDTIDVALA 220 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRD 298 ISLHA +++LR+ ++PIN ++ +E +D R Y +N R+T EYV+L +ND Sbjct: 221 ISLHAPTDELRSQIMPINDRWNIEAFLDVVRRYVNSTNANRGRVTVEYVLLDHVNDDMEH 280 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L K+LK PAKINLIPFNP+PG Y I F + + ++ +R RG DI Sbjct: 281 ARQLAKVLKDTPAKINLIPFNPYPGSPYKKPSNSRIDRFMKTLMEYDFTVTVRKTRGDDI 340 Query: 359 LAACGQLKSLSKRIPKVPRQEMQITG 384 AACGQL I + R + ++ Sbjct: 341 DAACGQLVGDV--IDRTKRTQAKLNA 364 >gi|163802471|ref|ZP_02196364.1| hypothetical protein 1103602000590_AND4_19477 [Vibrio sp. AND4] gi|159173772|gb|EDP58587.1| hypothetical protein AND4_19477 [Vibrio sp. AND4] Length = 375 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 142/365 (38%), Positives = 204/365 (55%), Gaps = 21/365 (5%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 +K +L+ R+ + + + R Q+ KWIY G+ DF M++I++++R Sbjct: 2 TTEKINLLDFDRKGMRQFFAE---ELGEKSFRADQVMKWIYHFGVDDFDNMTNINKKLRE 58 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L I P + + + S DGT KW ++ ++ETVYIPE R TLCVSSQV Sbjct: 59 KLQYKCEIKAPTVAEAQHSSDGTIKWAMKVGD------QDVETVYIPEDDRATLCVSSQV 112 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L C FC T Q RNL EI+ QV A +G + + R I+N+ Sbjct: 113 GCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREIG----------LQKETGRRPITNV 162 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ +I V LAIS Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAIS 222 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300 LHA +++LR+ ++PIN ++ ++ + + R Y SNA R +T EYV+L IND A Sbjct: 223 LHAPNDELRSQIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHINDDMDHAR 282 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L +++K P KINLIPFNP+PG Y I F + + + ++ +R RG DI A Sbjct: 283 ELAELMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDA 342 Query: 361 ACGQL 365 ACGQL Sbjct: 343 ACGQL 347 >gi|124267188|ref|YP_001021192.1| hypothetical protein Mpe_A1999 [Methylibium petroleiphilum PM1] gi|205829632|sp|A2SHB8|RLMN_METPP RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|124259963|gb|ABM94957.1| conserved hypothetical protein [Methylibium petroleiphilum PM1] Length = 394 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 149/386 (38%), Positives = 216/386 (55%), Gaps = 32/386 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + +L+ + L ++G R R +Q+++WI+ +G DF MSD+++ +R Sbjct: 1 MTAANLLEFDLDALAAFCEQLG----EKRFRATQLFRWIHQKGQSDFAQMSDLAKSLREK 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L + ++ E +S DGT KWL +GG +ETV+IPE RGTLC+SSQ G Sbjct: 57 LAGRAVVRPLAVLSEHVSADGTVKWLF-----DVGGGNAVETVFIPENDRGTLCISSQAG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C FC TG Q RNL+ EI+ Q+ A L G + R ISN+V Sbjct: 112 CAVGCRFCSTGHQGFSRNLSTGEIVAQLWHAEHQLRARLGTTE----------RVISNVV 161 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N+ + +L + D G S+RR+T+STSG VP I R+ E+ V LA+SL Sbjct: 162 MMGMGEPLQNYAALLPALRVMLDDHGYGLSRRRVTVSTSGVVPMIDRLREDCPVALAVSL 221 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA ++ LR+ LVP+NRKYP+ L++AC+ Y + ITFEY ML G+NDS A L+ Sbjct: 222 HAPTDALRDDLVPLNRKYPIAELLEACQRYLEAAPRDFITFEYCMLDGVNDSEAQARELL 281 Query: 304 KIL--KG----IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 +++ +G +P KINLIPFNP+P S + F++ + G + +R RG D Sbjct: 282 RLVGERGPVGRVPCKINLIPFNPFPASGLTRSSVARVQAFAQLLVDGGLVTTVRRTRGDD 341 Query: 358 ILAACGQLKSLSK-------RIPKVP 376 I AACGQL + R+ + P Sbjct: 342 IDAACGQLAGEVQDRTNAQARMRRAP 367 >gi|89098703|ref|ZP_01171585.1| hypothetical protein B14911_00900 [Bacillus sp. NRRL B-14911] gi|89086665|gb|EAR65784.1| hypothetical protein B14911_00900 [Bacillus sp. NRRL B-14911] Length = 362 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 118/368 (32%), Positives = 205/368 (55%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K S+ + +EL++ L + R +QI++W+Y + + F+ M+++S+ +R L Sbjct: 15 QKPSIYSLQLDELKDWLKEN----NEKAFRAAQIFEWLYQKRVASFEDMTNLSKALRDKL 70 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 N+ F++ + + ++ S DGT K+L IETV + + ++CV++QVGC Sbjct: 71 NETFTLTTLKTLIQQTSSDGTIKFLFELHD-----GYSIETVLMRHEYGNSVCVTTQVGC 125 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVKVQQALDE--------------TDERVSSVVI 171 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+D++ L I + GL+ R IT+STSG +P I + +E + + A+SL Sbjct: 172 MGIGEPFDNYDHMMSFLRIINHDDGLNIGARHITVSTSGIIPKIYKFADENMQINFAVSL 231 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA + ++R+ L+PINR Y L L++A R+Y + R++FEY + +ND A L Sbjct: 232 HAPNTEIRSRLMPINRAYKLPDLMEAIRYYVDKTGR-RVSFEYGLFGSVNDQVEHAEELA 290 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++KG+ +NLIP N P +Y+ + + I F + +K G + IR +G DI AACG Sbjct: 291 SLIKGLKCHVNLIPVNYVPERDYVRTPKDQIFAFEKALKNRGVNVTIRREQGHDIDAACG 350 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 351 QLRAKERK 358 >gi|188576716|ref|YP_001913645.1| radical SAM enzyme, Cfr family [Xanthomonas oryzae pv. oryzae PXO99A] gi|188576907|ref|YP_001913836.1| radical SAM enzyme, Cfr family [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521168|gb|ACD59113.1| radical SAM enzyme, Cfr family [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521359|gb|ACD59304.1| radical SAM enzyme, Cfr family [Xanthomonas oryzae pv. oryzae PXO99A] Length = 393 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 163/383 (42%), Positives = 225/383 (58%), Gaps = 28/383 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K++L+ + RE LE R R Q+ KWI+ R + DF M+D+ + +R L Sbjct: 13 RKQNLLDLDREGLERFFAD---TLGEARYRAHQVMKWIHHRYVTDFDHMTDLGKALRAKL 69 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +QH ++ P +V +K S DGT KWLL G IETVYIP+K RGTLCVSSQVGC Sbjct: 70 HQHAEVLVPNVVFDKPSTDGTHKWLLAM---GTDGKNAIETVYIPDKGRGTLCVSSQVGC 126 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 L CSFC T TQ RNLT EI+ QV +A LG+ +P R+++N+VM Sbjct: 127 GLNCSFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVVM 175 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SLH Sbjct: 176 MGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLH 235 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALNLI 303 A ++ LR LVP+N+KYP+ L+++C Y +TFEY ++KGIND P A L Sbjct: 236 AANDALRETLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLA 295 Query: 304 KILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 ++++ K+NLIPFNP+PG Y S + +I F + + + + +R RG Sbjct: 296 RLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTIVRRTRG 355 Query: 356 LDILAACGQLKSLSKRIPKVPRQ 378 DI AACGQLK + + RQ Sbjct: 356 DDIDAACGQLKGQV--MDRTRRQ 376 >gi|148979605|ref|ZP_01815610.1| hypothetical protein VSWAT3_08963 [Vibrionales bacterium SWAT-3] gi|145961690|gb|EDK26987.1| hypothetical protein VSWAT3_08963 [Vibrionales bacterium SWAT-3] Length = 380 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 143/387 (36%), Positives = 213/387 (55%), Gaps = 27/387 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ R+ L + + R Q+ KW+Y G+ DF+ M++I++++R L Sbjct: 5 KVNLLDFDRKGLRKFFTE---ELNEKAFRADQVMKWMYHFGVDDFENMNNINKKLREKLQ 61 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I+ P + + + S DGT KW + ++ETVYIP+ R TLCVSSQVGC+ Sbjct: 62 RRCEIVAPVVSEAQHSSDGTIKWAMSVGD------QDVETVYIPDGDRATLCVSSQVGCA 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ Q+ A +G + + R I+N+VMM Sbjct: 116 LECKFCSTAQQGFNRNLKVSEIVGQIWRAAREIG----------LEKETGRRPITNVVMM 165 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N N+ SL I D +G + SKRR+T+STSG V + ++ + I V LAISLHA Sbjct: 166 GMGEPLLNMKNLMPSLEIMLDDLGFALSKRRVTVSTSGVVSGLDQMTDNIDVALAISLHA 225 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNLI 303 +++LR+ ++PIN ++ ++ + + R Y SNA R +T EYV+L +ND A L Sbjct: 226 PNDELRSQIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHARELA 285 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +++K P KINLIPFNP+PG Y I F + + Y+ +R RG DI AACG Sbjct: 286 ELMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMEYDYTVTVRKTRGDDIDAACG 345 Query: 364 QL------KSLSKRIPKVPRQEMQITG 384 QL ++ ++ K + + G Sbjct: 346 QLVGDVIDRTKRTKMLKAASEANLVAG 372 >gi|256762921|ref|ZP_05503501.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|256684172|gb|EEU23867.1| conserved hypothetical protein [Enterococcus faecalis T3] Length = 357 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 133/379 (35%), Positives = 217/379 (57%), Gaps = 26/379 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++KES+ G+ RE+L + L G + R +Q+W+W+Y + + F MS+IS+ + L Sbjct: 1 MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVTSFSEMSNISKSLMIL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L ++FS+ + V + + DGT K+L P + + IETV + ++ ++CV++QVG Sbjct: 57 LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+LTA EI+ Q++ + + + ++S++V Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYFDE------------RGLDERVSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+ NV L +D GL+ R IT+STSG P I + + V LAIS Sbjct: 160 VMGIGEPFDNYANVMNFLRTINDDKGLAIGARHITVSTSGLAPKIREFADSGLQVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N++R ++ INR +P+E L+ A Y +N R+TFEY+ML +ND P A L Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKTNR-RVTFEYIMLSQVNDRPEHAQQL 278 Query: 303 IKILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 +L+ + +NLIP+NP + Y S ++ ++ F + +K++G + IR G DI Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338 Query: 360 AACGQLKSLSKRIPKVPRQ 378 AACGQL+S + KV Q Sbjct: 339 AACGQLRSKQMKKEKVKNQ 357 >gi|329767014|ref|ZP_08258542.1| ribosomal RNA large subunit methyltransferase N [Gemella haemolysans M341] gi|328837739|gb|EGF87364.1| ribosomal RNA large subunit methyltransferase N [Gemella haemolysans M341] Length = 377 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 123/372 (33%), Positives = 205/372 (55%), Gaps = 25/372 (6%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 + K S+ + ++LEE ++ IG + R QI+ W+Y + + DF M ++ + + Sbjct: 15 LKDFDKMSIYSLRLDQLEEYIVSIG----EKKFRAKQIYDWLYKKRVTDFSEMKNVPKSL 70 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 + L + F I + + ++ S DGT K+L + IE+V + K +LCV++ Sbjct: 71 QEKLAEEFEITTLKTIIKQESADGTMKFLFELQDKYT-----IESVLMKNKYGNSLCVTT 125 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC + C+FC + L RNL A EI+ QVL + + G +IS Sbjct: 126 QVGCRIGCTFCASTLGGLKRNLDAGEIVSQVLKVQQE--------------LDKKGERIS 171 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239 +IV+MG+GEP N+D + + I + + R IT+STSG VP I E++ + Sbjct: 172 SIVIMGIGEPFENYDEMMDFIRIVNSDESFNIGARHITVSTSGIVPKIYDFANEKVQINF 231 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA +N+LR+ ++P+NR Y ++ L++A ++Y +N RITFEY ++ +ND A Sbjct: 232 AVSLHAPTNELRSKIMPVNRAYNIDKLMEALKYYQETTNR-RITFEYGLMGKVNDQKEHA 290 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L +I+KG+ +NLIP N P Y+ + + DI F + +K++ + IR +G DI Sbjct: 291 EKLSEIIKGLNCHVNLIPINYVPERNYVRTSKSDIFAFEKILKKNKVNVTIRRTQGDDID 350 Query: 360 AACGQLKSLSKR 371 AACGQL++ ++ Sbjct: 351 AACGQLRAKERK 362 >gi|303257588|ref|ZP_07343600.1| radical SAM enzyme, Cfr family [Burkholderiales bacterium 1_1_47] gi|302859558|gb|EFL82637.1| radical SAM enzyme, Cfr family [Burkholderiales bacterium 1_1_47] Length = 384 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 156/379 (41%), Positives = 219/379 (57%), Gaps = 16/379 (4%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+G E L++ +G R Q+ +WI+ RG RDF M+D+++ R L Sbjct: 3 QKVNLLGFDAEGLKKFCEDLG----EKPFRAKQLERWIHRRGARDFSEMTDLAKSFRAKL 58 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PEI+ +K + DGTRKWLL +G +E VYIP+ RGTLCVSSQ GC Sbjct: 59 EKVAEIRGPEIIRDKTAADGTRKWLL-----DVGSGNAVEMVYIPQDGRGTLCVSSQAGC 113 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 ++ C FC TG Q RNL A EI+ Q+ A L G D R ISN+VM Sbjct: 114 AMNCLFCSTGKQGFNRNLKASEIIGQLRHAEHTLRKDLGITD-------ENERVISNVVM 166 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N D V SL + D S+RR+T+STSG V + ++ E+ V LA+SLH Sbjct: 167 MGMGEPLQNLDAVIPSLKLMLDDNAYGLSRRRVTVSTSGLVRQMDKLAEQCPVALAVSLH 226 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++P+NRK+PLE L+ AC+ Y + ITFEY+++ G+NDS A LI Sbjct: 227 APNNELRDKIMPVNRKHPLEQLLAACKRYLEHAPRDFITFEYILIGGVNDSLAQAKELIT 286 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +++ IP K NLIPFNP+PG S +++ F++ + +G + +R RG DI AACGQ Sbjct: 287 LVQDIPCKFNLIPFNPFPGSGLERSKPEEVKAFADRLNGAGIVTTVRKVRGDDIDAACGQ 346 Query: 365 LKSLSKRIPKVPRQEMQIT 383 L K K+ + Sbjct: 347 LAGEIKDRTKLAEKRANRE 365 >gi|330446674|ref|ZP_08310326.1| 23S rRNA m2A2503 methyltransferase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490865|dbj|GAA04823.1| 23S rRNA m2A2503 methyltransferase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 373 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 150/386 (38%), Positives = 211/386 (54%), Gaps = 24/386 (6%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M + K +L+ R+ L + + R QI KWIY G DF M++I++++ Sbjct: 1 MTTV-KINLLDFDRKGLRKYFAE---ELNEKPFRADQIMKWIYHFGCDDFDQMTNINKKL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L + I P + + + S DGT KW +R ++ETVYIP++ R TLCVSS Sbjct: 57 REKLKRVAEIRAPYVSEAQHSADGTIKWAMRVGD------QDVETVYIPDEDRATLCVSS 110 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC+L C FC T Q RNL EI+ QV A +G + + R I+ Sbjct: 111 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKEIG----------VQKETGRRPIT 160 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ I V LA Sbjct: 161 NVVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGNIDVALA 220 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRD 298 ISLHA +++LR+ ++PIN ++ +E +DA R Y +N R+T EYV+L +ND Sbjct: 221 ISLHAPTDELRSQIMPINNRWDIETFLDAVRRYVNSTNANRGRVTVEYVLLDHVNDDMEH 280 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L K+LK PAKINLIPFNP+PG Y I F + + ++ +R RG DI Sbjct: 281 ARQLAKVLKDTPAKINLIPFNPYPGSPYKKPSNSRIDRFMKTLMEYDFTVTVRKTRGDDI 340 Query: 359 LAACGQLKSLSKRIPKVPRQEMQITG 384 AACGQL I + R + ++ Sbjct: 341 DAACGQLVGDV--IDRTKRTQAKLNA 364 >gi|289670467|ref|ZP_06491542.1| hypothetical protein XcampmN_18763 [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 401 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 162/383 (42%), Positives = 225/383 (58%), Gaps = 28/383 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K++L+ + RE LE R R Q+ KWI+ R + DF M+D+ + +R L Sbjct: 21 RKQNLLDLDREGLERFFAD---TLGEARYRAHQVMKWIHRRYVTDFDQMTDLGKPLRAKL 77 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +QH ++ P +V +K S DGT KWLL G IETVYIP+K RGTLCVSSQVGC Sbjct: 78 HQHAEVLVPNVVFDKPSTDGTHKWLLAM---GTDGKNAIETVYIPDKGRGTLCVSSQVGC 134 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 L C+FC T TQ RNLT EI+ QV +A LG+ +P R+++N+VM Sbjct: 135 GLNCTFCSTATQGFNRNLTTAEIVGQVWVAARHLGN-----------VPHQQRRLTNVVM 183 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SLH Sbjct: 184 MGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLH 243 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALNLI 303 A ++ LR LVP+N+KYP+ L+++C Y +TFEY ++KGIND P A L Sbjct: 244 AANDALRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLA 303 Query: 304 KILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 ++++ K+NLIPFNP+PG Y S + +I F + + + + +R RG Sbjct: 304 RLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRG 363 Query: 356 LDILAACGQLKSLSKRIPKVPRQ 378 DI AACGQLK + + RQ Sbjct: 364 DDIDAACGQLKGQV--MDRTRRQ 384 >gi|229174530|ref|ZP_04302062.1| Radical SAM family enzyme [Bacillus cereus MM3] gi|228609090|gb|EEK66380.1| Radical SAM family enzyme [Bacillus cereus MM3] Length = 362 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 125/368 (33%), Positives = 204/368 (55%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S+ + E+++ L + G P + R QI+ W+Y + ++++ MS++S+ +R L Sbjct: 15 KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYDDMSNLSKGLRDKL 70 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I + ++ S DGT K+L + IETV + + ++CV++QVGC Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQLYD-----GYSIETVLMRHEYGNSICVTTQVGC 125 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+DN+ L I + G+ R +T+STSG VP I + EE + + AISL Sbjct: 172 MGIGEPFDNYDNLMSFLRIVNHEKGIHIGARHMTVSTSGIVPKIYKFAEEDMQINFAISL 231 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ + +LR+ L+PINR Y L L++A ++Y + RITFEY + G ND A L Sbjct: 232 HSANTELRSKLMPINRAYKLPDLMEAVKYYVNRTGR-RITFEYGLFGGENDQVEQAEELA 290 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 351 QLRAKERK 358 >gi|254369341|ref|ZP_04985353.1| radical SAM superfamily protein [Francisella tularensis subsp. holarctica FSC022] gi|157122291|gb|EDO66431.1| radical SAM superfamily protein [Francisella tularensis subsp. holarctica FSC022] Length = 370 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 157/382 (41%), Positives = 229/382 (59%), Gaps = 22/382 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K +L+G+ ++ +E+ + IG + Q++KWI+ +G+ DF M+D+ + +RH L Sbjct: 4 DKVNLLGLNQKAIEDFFISIG----KKKFHARQVFKWIHKKGVIDFDAMTDLGKNLRHKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I P++V K+S DGT KWL+ G +ETV+IPE+ RGTLCVSSQ+GC Sbjct: 60 KDKAQITIPKVVFSKVSKDGTHKWLIDV------GGSAVETVFIPEEGRGTLCVSSQIGC 113 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L CSFC TG Q RNL+A E++ Q+ +A L G D ++NIVM Sbjct: 114 TLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFT----------VTNIVM 163 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NF+NV ++ I D + S+R++TLSTSG VP I + E+ GV LA+SLH Sbjct: 164 MGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLH 223 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++ LRN +VPIN+KY ++ L++AC+ Y + ITFEY +++ +ND+ DA L+ Sbjct: 224 APNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEVNDNLSDAEELVA 283 Query: 305 ILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK PAKINLIPFNP+PG Y I F E ++ +G+ + +R RG DI AAC Sbjct: 284 LLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAAC 343 Query: 363 GQLKSLSKRIPKVPRQEMQITG 384 GQL ++ ++ G Sbjct: 344 GQLAGDVMDKTNRKQRYLKKLG 365 >gi|325294881|ref|YP_004281395.1| ribosomal RNA large subunit methyltransferase N [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065329|gb|ADY73336.1| Ribosomal RNA large subunit methyltransferase N [Desulfurobacterium thermolithotrophum DSM 11699] Length = 345 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 147/363 (40%), Positives = 215/363 (59%), Gaps = 26/363 (7%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 + + EEL+ + +G R QI +WIY + ++ F M++IS+ R +L+++ Sbjct: 4 IKNLNFEELQNFVQSLGFEN----YRAKQIAQWIYKKRVKSFDEMTNISKAARKVLSENA 59 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 I ++V + S DGT+K+L +E+V+IPEK TLCVS+QVGC + C Sbjct: 60 KIDVLKLVKVEKSMDGTKKYLFELED-----GNRVESVFIPEKDWNTLCVSTQVGCPVGC 114 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC T RNLTA EI+ Q + + +G+ ++ISN+V MGMG Sbjct: 115 KFCLTAKDGFTRNLTAAEIVDQYIHVQRDVGE---------------DKRISNVVFMGMG 159 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVS 247 EP NF+NVKK++ I +D L S R+IT+ST G VP I R+ +E+ V LAISLHA + Sbjct: 160 EPFLNFENVKKAVEIMTDKNMLDLSTRKITISTVGVVPGIDRMAKEMNKVKLAISLHATT 219 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 +++R +VP+NRKYP+ ++ A R YP N RRI EYVML+G+NDS DA L+K++K Sbjct: 220 DEVREKIVPLNRKYPISEIMAALRRYPA-DNIRRIMIEYVMLEGVNDSVEDAKRLVKLVK 278 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 GIP K+NLIPFN +PG + S ++ F + + ++ IR RG DI AACG L++ Sbjct: 279 GIPVKVNLIPFNSYPGAPFKPSSKEQTEKFQKVLWDHNIAAFIRDSRGQDISAACGMLRT 338 Query: 368 LSK 370 K Sbjct: 339 KEK 341 >gi|224476327|ref|YP_002633933.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus carnosus subsp. carnosus TM300] gi|254807211|sp|B9DPM7|RLMN_STACT RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|222420934|emb|CAL27748.1| putative Radical SAM family protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 364 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 125/370 (33%), Positives = 211/370 (57%), Gaps = 25/370 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K+S+ + EE+++ L++ G + R QI++W+Y + + M+++S+++R +L Sbjct: 17 DKQSIYSLRYEEMQDWLVEHG----QQKFRAKQIFQWLYEKRVDSIDEMTNLSKDLREVL 72 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +F++ E V ++ S DGT K+L IETV + + ++CV++QVGC Sbjct: 73 KDNFTMTTLETVVKQESRDGTIKFLFELQD-----GYTIETVLMRHEYGNSVCVTTQVGC 127 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QVL + V+ + ++S IV+ Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQK--------------VLDATDERVSQIVI 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+D + L I + GL+ R IT+STSG +P I EE I + A+SL Sbjct: 174 MGIGEPFENYDEMMDFLKIVNYDNGLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVSL 233 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA ++++R+ L+PINR Y ++ L++A ++Y +N RITFEY + G+ND A L Sbjct: 234 HAANDEIRSKLMPINRAYSIDKLMEAIQYYQEKTNR-RITFEYGLFGGVNDQLTHARELA 292 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +++ + +NLIP N P Y+ + ++DI F + +KR G ++ IR +G DI AACG Sbjct: 293 HLIQNLNCHVNLIPVNHVPERNYVKTPKEDIFKFEKELKRLGINATIRREQGSDIDAACG 352 Query: 364 QLKSLSKRIP 373 QL++ +++ Sbjct: 353 QLRAKERQVE 362 >gi|239636303|ref|ZP_04677305.1| radical SAM enzyme, Cfr family [Staphylococcus warneri L37603] gi|239597658|gb|EEQ80153.1| radical SAM enzyme, Cfr family [Staphylococcus warneri L37603] Length = 364 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 126/370 (34%), Positives = 207/370 (55%), Gaps = 25/370 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K+S+ + +E++ L++ G + R QI++W+Y + + M+++S+++R LL Sbjct: 17 EKQSIYSLRYDEMQNWLIEHG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKDLRQLL 72 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +F++ V ++ S DGT K+L IETV + + ++CV++QVGC Sbjct: 73 KDNFAMTTLTTVVKQESRDGTIKFLFELQD-----GYTIETVLMRHEYGNSVCVTTQVGC 127 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QVL + L + ++S IV+ Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TEERVSQIVI 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+D + L I +D L+ R IT+STSG +P I EE I + A+SL Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVSL 233 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H +++R+ L+PINR Y +E L++A +Y +N RITFEY + G+ND A +L Sbjct: 234 HGAKDEVRSRLMPINRAYNVEKLMEAIEYYQEKTNR-RITFEYGLFGGVNDQLEHARDLA 292 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++KG+ +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AACG Sbjct: 293 HLIKGLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAACG 352 Query: 364 QLKSLSKRIP 373 QL++ +++ Sbjct: 353 QLRAKERQVE 362 >gi|226313314|ref|YP_002773208.1| ribosomal RNA large subunit methyltransferase N [Brevibacillus brevis NBRC 100599] gi|226096262|dbj|BAH44704.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 356 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 129/367 (35%), Positives = 204/367 (55%), Gaps = 25/367 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K + + ++E++E L+ G R QI+ W+YV+ + F+ MS++S+E+R L Sbjct: 10 KPLIYSLTQDEMKEWLVSAGDKA----FRAQQIFDWLYVKRVSSFEEMSNLSKELREKLA 65 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + + S DGT K+L + IETV + ++CV++QVGC Sbjct: 66 DTFRMEPLKEITHQESQDGTIKFLFQLVD-----GHAIETVIMRHNYGNSICVTTQVGCR 120 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC + L RNL A EI+ QVL A+ + + G ++S++V+M Sbjct: 121 IGCTFCASTLGGLKRNLDAGEIVSQVLTAQR--------------RLDAEGERVSHVVVM 166 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244 G+GEP NF+++ LS+ +D+ GL+ R IT+STSG VP I E V LAISLH Sbjct: 167 GIGEPFENFESLMAFLSVINDNRGLNIGARHITVSTSGIVPKIYEFAERGGQVNLAISLH 226 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A + +LR+ L+PINR +PL L++AC HY + RI+FEY + G ND P A L + Sbjct: 227 APNTELRSQLMPINRGFPLAKLMEACHHYINKTGR-RISFEYGLFGGKNDQPEHAEELAE 285 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 ++ + +NLIP N P +Y+ + + +I F ++ G + IR +G DI AACGQ Sbjct: 286 LIGDMLCHVNLIPVNYVPERDYVRTPRNEIFQFKRILEEKGINVTIRREQGSDIAAACGQ 345 Query: 365 LKSLSKR 371 L++ + Sbjct: 346 LRAQHAK 352 >gi|330999629|ref|ZP_08323338.1| 23S rRNA m2A2503 methyltransferase [Parasutterella excrementihominis YIT 11859] gi|329574135|gb|EGG55711.1| 23S rRNA m2A2503 methyltransferase [Parasutterella excrementihominis YIT 11859] Length = 389 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 156/379 (41%), Positives = 219/379 (57%), Gaps = 16/379 (4%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+G E L++ +G R Q+ +WI+ RG RDF M+D+++ R L Sbjct: 8 QKVNLLGFDAEGLKKFCEDLG----EKPFRAKQLERWIHRRGARDFSEMTDLAKSFRAKL 63 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I PEI+ +K + DGTRKWLL +G +E VYIP+ RGTLCVSSQ GC Sbjct: 64 EKVAEIRGPEIIRDKTAADGTRKWLL-----DVGSGNAVEMVYIPQDGRGTLCVSSQAGC 118 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 ++ C FC TG Q RNL A EI+ Q+ A L G D R ISN+VM Sbjct: 119 AMNCLFCSTGKQGFNRNLKASEIIGQLRHAEHTLRKDLGITD-------ENERVISNVVM 171 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N D V SL + D S+RR+T+STSG V + ++ E+ V LA+SLH Sbjct: 172 MGMGEPLQNLDAVIPSLKLMLDDNAYGLSRRRVTVSTSGLVRQMDKLAEQCPVALAVSLH 231 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++P+NRK+PLE L+ AC+ Y + ITFEY+++ G+NDS A LI Sbjct: 232 APNNELRDKIMPVNRKHPLEQLLAACKRYLEHAPRDFITFEYILIGGVNDSLAQAKELIT 291 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +++ IP K NLIPFNP+PG S +++ F++ + +G + +R RG DI AACGQ Sbjct: 292 LVQDIPCKFNLIPFNPFPGSGLERSKPEEVKAFADRLNGAGIVTTVRKVRGDDIDAACGQ 351 Query: 365 LKSLSKRIPKVPRQEMQIT 383 L K K+ + Sbjct: 352 LAGEIKDRTKLAEKRANRE 370 >gi|296136235|ref|YP_003643477.1| radical SAM enzyme, Cfr family [Thiomonas intermedia K12] gi|295796357|gb|ADG31147.1| radical SAM enzyme, Cfr family [Thiomonas intermedia K12] Length = 379 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 149/376 (39%), Positives = 214/376 (56%), Gaps = 20/376 (5%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+ R+ L E + G H R Q+++W++ +G+ DF+ MSD+++ +R L + Sbjct: 8 TNLLQFDRDGLVEWFGRHG----HAAFRARQVFRWMHQKGVADFEAMSDLAKPLRQFLRE 63 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 H I ++ E+ S DGT KWL +G +E V+IPE R TLCVSSQ GC++ Sbjct: 64 HAHIAALPVLSEQRSADGTVKWLF-----DVGQGNAVEAVFIPEAQRNTLCVSSQAGCAV 118 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG Q RNL EIL Q+ A + G +P R ISN+VMMG Sbjct: 119 NCKFCSTGHQGFSRNLQTWEILAQLWHAEFTMRRELG--------LPGGERAISNVVMMG 170 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N+ + +L D G S+RR+T+STSG VP I R+ ++ V LA+SLHA Sbjct: 171 MGEPLQNYSALVPALRTMLDDDGYGLSRRRVTVSTSGVVPMIDRLSQDCPVALAVSLHAP 230 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 + LR+ LVP+NRKYPL L+ AC+ Y + ITFEY ML G+ND+P A +L++++ Sbjct: 231 VDALRDELVPLNRKYPLHELLAACKRYLDFAPRDFITFEYCMLDGVNDTPALAEDLVRLV 290 Query: 307 K--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 + + K NLIPFNP+P S + F++ + +G + +R RG DI AACGQ Sbjct: 291 RAAQVNCKFNLIPFNPFPQSGLKRSSAARVAAFAQVLLDAGLVTTVRKTRGDDIDAACGQ 350 Query: 365 LKSLSK-RIPKVPRQE 379 L + R +V R + Sbjct: 351 LAGEVQDRTRRVIRMQ 366 >gi|163941602|ref|YP_001646486.1| radical SAM protein [Bacillus weihenstephanensis KBAB4] gi|229013048|ref|ZP_04170213.1| Radical SAM family enzyme [Bacillus mycoides DSM 2048] gi|229061467|ref|ZP_04198812.1| Radical SAM family enzyme [Bacillus cereus AH603] gi|229168604|ref|ZP_04296327.1| Radical SAM family enzyme [Bacillus cereus AH621] gi|205829666|sp|A9VTA2|RLMN_BACWK RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|163863799|gb|ABY44858.1| radical SAM enzyme, Cfr family [Bacillus weihenstephanensis KBAB4] gi|228615010|gb|EEK72112.1| Radical SAM family enzyme [Bacillus cereus AH621] gi|228717890|gb|EEL69538.1| Radical SAM family enzyme [Bacillus cereus AH603] gi|228748302|gb|EEL98162.1| Radical SAM family enzyme [Bacillus mycoides DSM 2048] Length = 362 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 124/368 (33%), Positives = 205/368 (55%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++++ +R L Sbjct: 15 KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLAKGLRDKL 70 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I + ++ S DGT K+L + IETV + + ++CV++QVGC Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQLYD-----GYSIETVLMRHEYGNSICVTTQVGC 125 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+DN+ L I + G+ R +T+STSG VP I + EE + + AISL Sbjct: 172 MGIGEPFDNYDNLMSFLRIVNHEKGIHIGARHMTVSTSGIVPKIYKFAEEDMQINFAISL 231 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA + ++R+ L+PINR Y L L++A ++Y + RITFEY + G ND A L Sbjct: 232 HAANTEIRSKLMPINRAYKLPDLMEAVKYYVNRTGR-RITFEYGLFGGENDQVEHAEELA 290 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 351 QLRAKERK 358 >gi|229019062|ref|ZP_04175900.1| Radical SAM family enzyme [Bacillus cereus AH1273] gi|229025306|ref|ZP_04181725.1| Radical SAM family enzyme [Bacillus cereus AH1272] gi|228735997|gb|EEL86573.1| Radical SAM family enzyme [Bacillus cereus AH1272] gi|228742230|gb|EEL92392.1| Radical SAM family enzyme [Bacillus cereus AH1273] Length = 362 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 125/368 (33%), Positives = 205/368 (55%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++S+ +R L Sbjct: 15 KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I + ++ S DGT K+L + IETV + + ++CV++QVGC Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQLYD-----GYSIETVLMRHEYGNSICVTTQVGC 125 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+DN+ L I + G+ R +T+STSG VP I + EE + + AISL Sbjct: 172 MGIGEPFDNYDNLMSFLRIVNHEKGIHIGARHMTVSTSGIVPKIYKFAEEDMQINFAISL 231 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ + +LR+ L+PINR Y L L++A ++Y + RITFEY + G ND A L Sbjct: 232 HSANTELRSKLMPINRAYKLPDLMEAVKYYVNRTGR-RITFEYGLFGGENDQVEQAEELA 290 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 351 QLRAKERK 358 >gi|119471078|ref|ZP_01613637.1| predicted enzyme [Alteromonadales bacterium TW-7] gi|119445918|gb|EAW27199.1| predicted enzyme [Alteromonadales bacterium TW-7] Length = 377 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 164/379 (43%), Positives = 225/379 (59%), Gaps = 21/379 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R+ + E + G R Q+ KWIY G+ +F MS+++++++ L Sbjct: 6 KKINLLDLNRDAMRELFVSFG----EKPFRGDQVMKWIYHFGVDNFDEMSNVNKKLKEKL 61 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I+ PEI + + DGT K+ L G E+E V+IPEK R TLCVSSQVGC Sbjct: 62 KAECEIVAPEISVRQQASDGTIKYALVLE-----GGQEVEAVWIPEKERATLCVSSQVGC 116 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC T Q RNL EI+ QV +G + S R ++N+VM Sbjct: 117 ALECTFCSTAQQGFNRNLKVSEIIGQVWRVAKDIG----------LDGNSEKRPVTNVVM 166 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ + D G SKRR+TLSTSG VP + + E+I V LAISLH Sbjct: 167 MGMGEPLLNVKNVVPAMELMMDDWGFGLSKRRVTLSTSGVVPALDLLKEKIDVALAISLH 226 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALNLI 303 A N LR+ILVPIN+KYP+E + ACR Y S A + +T EYVML G+NDS A L+ Sbjct: 227 APDNALRDILVPINKKYPIEEFLAACRRYIDGSKANKDVTIEYVMLNGVNDSTDQAHELV 286 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K LKG P+K+NLIPFNP+PG EY S I FS+ ++ +G + +R RG DI AACG Sbjct: 287 KTLKGTPSKVNLIPFNPFPGNEYTRSSNSRIDRFSKVLQAAGITCIVRRTRGDDIDAACG 346 Query: 364 QLKS-LSKRIPKVPRQEMQ 381 QL + R ++ +++M+ Sbjct: 347 QLAGDVVDRTKRMAKKKMR 365 >gi|294340470|emb|CAZ88851.1| putative radical SAM enzyme, Cfr family, yfgB [Thiomonas sp. 3As] Length = 379 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 149/376 (39%), Positives = 214/376 (56%), Gaps = 20/376 (5%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+ R+ L E + G H R Q+++W++ +G+ DF+ MSD+++ +R L + Sbjct: 8 TNLLQFDRDGLVEWFGRHG----HAAFRARQVFRWMHQKGVADFEAMSDLAKPLRQFLRE 63 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 H I ++ E+ S DGT KWL +G +E V+IPE R TLCVSSQ GC++ Sbjct: 64 HAHIAALPVLSEQRSADGTVKWLF-----DVGQGNAVEAVFIPEAQRNTLCVSSQAGCAV 118 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG Q RNL EIL Q+ A + G +P R ISN+VMMG Sbjct: 119 NCKFCSTGHQGFSRNLQTWEILAQLWHAEFTMRRELG--------LPGGERAISNVVMMG 170 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N+ + +L D G S+RR+T+STSG VP I R+ ++ V LA+SLHA Sbjct: 171 MGEPLQNYSALVPALRTMLDDDGYGLSRRRVTVSTSGVVPMIDRLSQDCPVALAVSLHAP 230 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 + LR+ LVP+NRKYPL L+ AC+ Y + ITFEY ML G+ND+P A +L++++ Sbjct: 231 VDALRDELVPLNRKYPLHELLAACKRYLDFAPRDFITFEYCMLDGVNDTPALAQDLVRLV 290 Query: 307 K--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 + + K NLIPFNP+P S + F++ + +G + +R RG DI AACGQ Sbjct: 291 RAAQVNCKFNLIPFNPFPQSGLKRSSAARVAAFAQVLLDAGLVTTVRKTRGDDIDAACGQ 350 Query: 365 LKSLSK-RIPKVPRQE 379 L + R +V R + Sbjct: 351 LAGEVQDRTRRVIRMQ 366 >gi|227552455|ref|ZP_03982504.1| Fe-S-cluster redox enzyme [Enterococcus faecium TX1330] gi|257888305|ref|ZP_05667958.1| ribosomal RNA large subunit methyltransferase N [Enterococcus faecium 1,141,733] gi|257896805|ref|ZP_05676458.1| ribosomal RNA large subunit methyltransferase N [Enterococcus faecium Com12] gi|257899742|ref|ZP_05679395.1| ribosomal RNA large subunit methyltransferase N [Enterococcus faecium Com15] gi|293378566|ref|ZP_06624729.1| radical SAM enzyme, Cfr family [Enterococcus faecium PC4.1] gi|293573136|ref|ZP_06684073.1| radical SAM enzyme, Cfr family [Enterococcus faecium E980] gi|227178412|gb|EEI59384.1| Fe-S-cluster redox enzyme [Enterococcus faecium TX1330] gi|257824359|gb|EEV51291.1| ribosomal RNA large subunit methyltransferase N [Enterococcus faecium 1,141,733] gi|257833370|gb|EEV59791.1| ribosomal RNA large subunit methyltransferase N [Enterococcus faecium Com12] gi|257837654|gb|EEV62728.1| ribosomal RNA large subunit methyltransferase N [Enterococcus faecium Com15] gi|291606774|gb|EFF36159.1| radical SAM enzyme, Cfr family [Enterococcus faecium E980] gi|292642895|gb|EFF61042.1| radical SAM enzyme, Cfr family [Enterococcus faecium PC4.1] Length = 355 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 131/377 (34%), Positives = 218/377 (57%), Gaps = 26/377 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K+S+ G+ EEL ++ G + R +Q+W+W+Y + + +F M+++S+++ Sbjct: 1 MEKQSIYGLTNEELINWFIENG----EKKFRAAQVWEWLYQKRVSNFTEMTNLSKQLIEK 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L+ HF I + + + + DGT K+L P + + IETV + ++ ++CV++QVG Sbjct: 57 LSAHFIINPLKQMVVQEASDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+LTA EI+ Q+++ + + ++G ++S++V Sbjct: 112 CNIGCTFCASGLLKKNRDLTAGEIVAQIMMVQHYFDE------------RNLGERVSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+DNV L I +D+ GL+ R IT+STSG I + V LAIS Sbjct: 160 VMGIGEPFDNYDNVMDFLHIINDAKGLAIGARHITVSTSGLAHKIKEFANNGLQVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N++R ++ INR +P+E L++A Y +N RITFEY+ML +ND P A L Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMEAVDEYLEKTNR-RITFEYIMLNQVNDRPEHAQQL 278 Query: 303 IKILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 +LK A +NLIP+NP + Y S + D++ F + +K++G + IR G DI Sbjct: 279 ADLLKDKKKLAYVNLIPYNPVSEHDQYSRSPKADVLRFYDVLKKNGVNCVIRKEHGTDID 338 Query: 360 AACGQLKSLSKRIPKVP 376 AACGQL+S + Sbjct: 339 AACGQLRSKQMKKTAAK 355 >gi|229134672|ref|ZP_04263481.1| Radical SAM family enzyme [Bacillus cereus BDRD-ST196] gi|228648718|gb|EEL04744.1| Radical SAM family enzyme [Bacillus cereus BDRD-ST196] Length = 362 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 124/368 (33%), Positives = 205/368 (55%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++++ +R L Sbjct: 15 KKPSIYSLQLHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLAKGLRDKL 70 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I + ++ S DGT K+L + IETV + + ++CV++QVGC Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQLYD-----GYSIETVLMRHEYGNSICVTTQVGC 125 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+DN+ L I + G+ R +T+STSG VP I + EE + + AISL Sbjct: 172 MGIGEPFDNYDNLMSFLRIVNHEKGIHIGARHMTVSTSGIVPKIYKFAEEDMQINFAISL 231 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA + ++R+ L+PINR Y L L++A ++Y + RITFEY + G ND A L Sbjct: 232 HAANTEIRSKLMPINRAYKLPDLMEAVKYYVNRTGR-RITFEYGLFGGENDQVEHAEELA 290 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LKG+ +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACG Sbjct: 291 ALLKGVKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACG 350 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 351 QLRAKERK 358 >gi|323440993|gb|EGA98700.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus O11] Length = 364 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 125/370 (33%), Positives = 206/370 (55%), Gaps = 25/370 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K+S+ + +E++ L++ G + R QI++W+Y + + M+++S+++R LL Sbjct: 17 DKQSIYSLRFDEMQNWLVEQG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKDLRQLL 72 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +F++ V ++ S DGT K+L IETV + ++CV++QVGC Sbjct: 73 KDNFTVTSLTTVVKQESKDGTIKFLFELQD-----GYTIETVLMRHDYGNSVCVTTQVGC 127 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QVL + + + ++S IV+ Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQK--------------ALDATEERVSQIVI 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+D + L I +D L+ R IT+STSG +P I +E I + A+SL Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFADEDIQINFAVSL 233 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++R+ L+PINR Y +E LI+A ++Y +N R+TFEY + G+ND A L Sbjct: 234 HAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTNR-RVTFEYGLFGGVNDQLEHARELA 292 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++KG+ +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AACG Sbjct: 293 HLIKGLNCHVNLIPVNHVPERNYVKTAKNDIFKFEKELKRLGINATIRREQGSDIDAACG 352 Query: 364 QLKSLSKRIP 373 QL++ +++ Sbjct: 353 QLRAKERQVE 362 >gi|328553529|gb|AEB24021.1| ribosomal RNA large subunit methyltransferase N [Bacillus amyloliquefaciens TA208] gi|328911679|gb|AEB63275.1| putative Fe-S-cluster AdoMet radical enzyme [Bacillus amyloliquefaciens LL3] Length = 363 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 117/368 (31%), Positives = 201/368 (54%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 ++ S+ +E+++ L + G R +QI++W+Y + + F M+++S+ +R L Sbjct: 16 EQPSIYSFELDEIKQWLTENG----EKPFRAAQIFEWLYEKRVSSFDEMTNLSKSLREKL 71 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +F + + ++ S DGT K+L IETV + + ++CV++QVGC Sbjct: 72 ESNFVMTTLKTAVKQTSQDGTMKFLFELHD-----GYTIETVLMRHEYGNSVCVTTQVGC 126 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 127 RIGCTFCASTLGGLKRNLEAGEIVAQVVKVQKALDE--------------TDERVSSVVI 172 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP NF+ + L I + GL+ R IT+STSG +P I ++ + + AISL Sbjct: 173 MGIGEPFDNFNEMLAFLKIINHDKGLNIGARHITVSTSGIIPKIYDFADQKMQINFAISL 232 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA + ++R+ L+PIN+ Y L L++A ++Y + RI+FEY + G+ND A L Sbjct: 233 HAPNTEIRSRLMPINKAYKLPDLMEAVKYYIEKTGR-RISFEYGLFGGVNDQVEHAEELA 291 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LKG+ +NLIP N P +Y+ + + I F + +K G + IR +G DI AACG Sbjct: 292 ELLKGVKCHVNLIPVNYVPERDYVRTPRDQIFAFEKTLKSRGVNVTIRREQGHDIDAACG 351 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 352 QLRAKERQ 359 >gi|323491629|ref|ZP_08096808.1| ribosomal RNA large subunit methyltransferase N [Vibrio brasiliensis LMG 20546] gi|323314205|gb|EGA67290.1| ribosomal RNA large subunit methyltransferase N [Vibrio brasiliensis LMG 20546] Length = 375 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 144/384 (37%), Positives = 207/384 (53%), Gaps = 23/384 (5%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 +K +L+ R+ + + R Q+ KWIY G+ +F M++I++++R Sbjct: 2 TTEKINLLDFDRQGMRKFFADQ---LGEKAFRADQVMKWIYHFGVDNFDDMTNINKKLRE 58 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L I P + + + S DGT KW ++ ++ETVYIPE+ R TLCVSSQV Sbjct: 59 KLQHRCEIKAPTVAEAQHSSDGTIKWAMKVGD------QDVETVYIPEEDRATLCVSSQV 112 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L C FC T Q RNL EI+ QV A +G + + R I+NI Sbjct: 113 GCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREIG----------LQKETGRRPITNI 162 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ +I V LAIS Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAIS 222 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300 LHA ++ LR+ ++PIN ++ ++ + + R Y SNA R +T EYV+L +ND A Sbjct: 223 LHAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHAR 282 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L +++K P KINLIPFNP+PG Y I F + + + ++ +R RG DI A Sbjct: 283 ELAELMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDA 342 Query: 361 ACGQLKSLSKRIPKVPRQEMQITG 384 ACGQL I + R M Sbjct: 343 ACGQLVGDV--IDRTKRTAMNKAA 364 >gi|77362060|ref|YP_341634.1| ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas haloplanktis TAC125] gi|123757670|sp|Q3ID16|RLMN_PSEHT RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|76876971|emb|CAI89188.1| putative pyruvate formate lyase activating enzyme 2; Fe-S cluster domain [Pseudoalteromonas haloplanktis TAC125] Length = 376 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 166/383 (43%), Positives = 226/383 (59%), Gaps = 21/383 (5%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M KK +L+ + RE + E G R+ Q+ KWIY G+ +F MS++++++ Sbjct: 1 MTEQKKINLLDLNREGMRELFASFG----EKPFRSDQVMKWIYHFGVDNFDDMSNVNKKL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 + L I+ PEI + + DGT K+ L G E+E V+IPEK R TLCVSS Sbjct: 57 KEKLKAECEIVAPEISVRQQAKDGTIKYALVLE-----GGQEVEAVWIPEKERATLCVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC+L C+FC T Q RNL EI+ QV +G + S R ++ Sbjct: 112 QVGCALECTFCSTAQQGFNRNLKVSEIIGQVWRVAKDIG----------LDGHSEKRPVT 161 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N NV ++ + D G SKRR+TLSTSG VP + + E+I V LA Sbjct: 162 NVVMMGMGEPLLNVKNVVPAMELMLDDWGFGLSKRRVTLSTSGVVPALDLLKEKIDVALA 221 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDA 299 ISLHA N LR+ILVP+N+KYP+E + ACR Y S A + +T EYVML GINDS A Sbjct: 222 ISLHAPDNALRDILVPVNKKYPIEEFLAACRRYIDGSKANKDVTVEYVMLNGINDSTDQA 281 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L++ LKG P K+NLIPFNP+PG EY S I FS+ ++ +G + +R PRG DI Sbjct: 282 HALVQTLKGTPCKVNLIPFNPFPGNEYTRSSNSRIDRFSKVLQAAGITCIVRRPRGDDID 341 Query: 360 AACGQLKS-LSKRIPKVPRQEMQ 381 AACGQL + R ++ +++M+ Sbjct: 342 AACGQLAGDVVDRTKRLAKKKMR 364 >gi|81587943|sp|Q8DEZ6|RLMN_VIBVU RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase Length = 374 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 148/379 (39%), Positives = 212/379 (55%), Gaps = 25/379 (6%) Query: 5 KKESLIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +K +L+ R+ + + ++G R Q+ KWIY G+ DF M++I++++R Sbjct: 4 EKINLLVFDRKGMRDLFAQELG----EKAFRADQVMKWIYHFGVDDFDNMTNINKQLREK 59 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L Q I+ P + + + S DGT KW +R ++ETVYIPE+ R TLCVSSQVG Sbjct: 60 LKQKCEIVAPVVSEAQHSSDGTIKWAMRVGD------QDVETVYIPEEDRATLCVSSQVG 113 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L C FC T Q RNL EI+ QV A +G + + R I+N+V Sbjct: 114 CALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREVG----------LEKETGRRPITNVV 163 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ +I V LAISL Sbjct: 164 MMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAISL 223 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALN 301 HA ++ LR+ ++PIN ++ ++ + + R Y SNA R +T EYV+L +ND A Sbjct: 224 HAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAHE 283 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L +++K P KINLIPFNP+PG Y I F + + + ++ IR RG DI AA Sbjct: 284 LAQLMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAA 343 Query: 362 CGQLKSLSKRIPKVPRQEM 380 CGQL I + R M Sbjct: 344 CGQLVGDV--IDRTKRTAM 360 >gi|157692255|ref|YP_001486717.1| Fe-S-cluster redox protein [Bacillus pumilus SAFR-032] gi|205829664|sp|A8FD40|RLMN_BACP2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|157681013|gb|ABV62157.1| possible Fe-S-cluster redox protein [Bacillus pumilus SAFR-032] Length = 360 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 123/366 (33%), Positives = 200/366 (54%), Gaps = 25/366 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 S+ E++E L + Q R +QI++W+Y + + F MS++S+E+R L Sbjct: 15 PSIYSFELHEMKEWLKE----QDEKPFRAAQIFEWLYEKRVTSFDAMSNLSKELREKLKA 70 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 F+I + V ++ S DGT K+L IETV + + ++CV++QVGC + Sbjct: 71 QFAITTLKTVIKQTSQDGTIKFLFELHD-----GYTIETVLMRHEYGNSVCVTTQVGCRI 125 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC + L RNL A EI+ QVL + L + ++S++V+MG Sbjct: 126 GCTFCASTLGGLKRNLEAGEIVAQVLKVQQALDE--------------TDERVSSVVIMG 171 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 +GEP NF+ + L I + GL+ R IT+STSG +P I + +E + + A+SLHA Sbjct: 172 IGEPFDNFEEMLAFLKIINHDNGLNIGARHITVSTSGIIPKIYQFADEQMQINFAVSLHA 231 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + ++R+ L+PIN+ Y L L++A +Y + R++FEY + G+ND A L + Sbjct: 232 PNTEIRSRLMPINKAYKLPKLMEAIEYYIQKTGR-RVSFEYGLFGGVNDQVHHAEELADL 290 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKGI +NLIP N P +Y+ + ++ I F + +K G + IR +G DI AACGQL Sbjct: 291 LKGIKCHVNLIPVNYVPERDYVRTPREQIFLFEKTLKERGVNVTIRREQGHDIDAACGQL 350 Query: 366 KSLSKR 371 ++ ++ Sbjct: 351 RAKERQ 356 >gi|134094488|ref|YP_001099563.1| hypothetical protein HEAR1261 [Herminiimonas arsenicoxydans] gi|205829776|sp|A4G4J9|RLMN_HERAR RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|133738391|emb|CAL61436.1| putative Fe-S-cluster redox enzyme [Herminiimonas arsenicoxydans] Length = 386 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 141/365 (38%), Positives = 210/365 (57%), Gaps = 14/365 (3%) Query: 14 REELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYP 73 +L ++G R Q+ +WI+ G DF M+D+++ +R L I P Sbjct: 13 PAQLIAYCGELG----EKPFRAKQLQRWIHQFGASDFDAMTDLAKSLRDKLKTRAMIAAP 68 Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133 ++ + S DGTRKWL+ +G +ETV+IPE++RGTLC+S+Q GC++ C FC T Sbjct: 69 AVISDHTSSDGTRKWLI-----DVGQGNAVETVFIPEENRGTLCISTQAGCAVNCRFCST 123 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 G Q RNL+ EI+ Q+ +A +F P R+I+N+VMMGMGEPL N Sbjct: 124 GKQGFNRNLSVGEIIGQLWMA-----EFELRRTKGIEPGPKGERQITNVVMMGMGEPLLN 178 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNI 253 ++ +L + D S+RR+TLSTSG VP I ++ ++ V LA+SLHA ++ LR+ Sbjct: 179 YEPTVTALKLMLDDNAYGLSRRRVTLSTSGVVPMIDKLSQDCAVALAVSLHASNDALRDG 238 Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313 LVP+N+KYPL+ L+ AC+ Y + +TFEY ML G+NDS + A L+ +++ +P K Sbjct: 239 LVPLNKKYPLQELMAACKRYLEFAPRDFVTFEYCMLDGVNDSDQHARELLTLVRDVPCKF 298 Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIP 373 NLIPFNP+P S+ I F++ + G + IR RG DI AACGQL + Sbjct: 299 NLIPFNPFPESGLTRSNNPRIKAFAQVLMDGGLVTTIRKTRGDDIDAACGQLAGEVQDRT 358 Query: 374 KVPRQ 378 +V + Sbjct: 359 RVQDR 363 >gi|269962413|ref|ZP_06176763.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832909|gb|EEZ87018.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 375 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 141/365 (38%), Positives = 203/365 (55%), Gaps = 21/365 (5%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 +K +L+ R+ + + + R Q+ KWIY G+ DF M++I++++R Sbjct: 2 TTEKINLLDFDRKGMRQFFAE---ELGEKAFRADQVMKWIYHFGVDDFDNMTNINKKLRE 58 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L I P + + + S DGT KW ++ ++ETVYIPE R TLCVSSQV Sbjct: 59 KLQHKCEIKAPTVAEAQHSSDGTIKWAMKVGD------QDVETVYIPEDDRATLCVSSQV 112 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L C FC T Q RNL EI+ QV A +G + + R I+N+ Sbjct: 113 GCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREIG----------LQKETGRRPITNV 162 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ +I V LAIS Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAIS 222 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300 LHA ++ LR+ ++PIN ++ ++ + + R Y SNA R +T EYV+L +ND A Sbjct: 223 LHAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHAR 282 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L +++K P KINLIPFNP+PG Y I F + + + ++ +R RG DI A Sbjct: 283 ELAELMKETPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYDHTVTVRKTRGDDIDA 342 Query: 361 ACGQL 365 ACGQL Sbjct: 343 ACGQL 347 >gi|89901088|ref|YP_523559.1| hypothetical protein Rfer_2310 [Rhodoferax ferrireducens T118] gi|123397164|sp|Q21W25|RLMN_RHOFD RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|89345825|gb|ABD70028.1| conserved hypothetical protein [Rhodoferax ferrireducens T118] Length = 382 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 143/379 (37%), Positives = 211/379 (55%), Gaps = 24/379 (6%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L+ + L ++G R R Q+++WI+ +G +F MSD+++ +R L Sbjct: 4 NLLDFDLDGLAVFCERLG----EKRYRAVQLFRWIHQKGASNFDDMSDLAKSLREKLKVS 59 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 + P+++ + IS DGT KWL +GG +E V+IPE+ RGTLC+SSQ GC++ Sbjct: 60 AQVKAPDLISQHISSDGTIKWLF-----DVGGGDAVEAVFIPEEDRGTLCISSQAGCAMG 114 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC TG Q RNL EI+ Q+ A L ++ R ISN+VMMGM Sbjct: 115 CRFCSTGHQGFSRNLKTGEIIAQLWFAEHFLRKHLQRDE----------RVISNVVMMGM 164 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL N+ + +L D G S+RR+T+STSG VP + R+ + V LA+SLHA + Sbjct: 165 GEPLQNYAELVPALRAMLDDHGYGLSRRRVTVSTSGVVPMMDRLARDCPVALAVSLHAPN 224 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 + LR+ LVP+N+KY L L++AC Y + ITFEY ML+ +ND P A L+++++ Sbjct: 225 DLLRDDLVPLNKKYSLAELLNACNRYLAYAPRDFITFEYCMLEDVNDQPEHAQQLVRLVQ 284 Query: 308 -----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 G+ K NLIPFNP+P S + I F++ + +G + IR RG DI AAC Sbjct: 285 HYSSGGVWCKFNLIPFNPFPASGLTRSTPERIQAFAKILSDAGIVTTIRKTRGDDIDAAC 344 Query: 363 GQLKSLSKRIPKVPRQEMQ 381 GQL K +V + + Sbjct: 345 GQLAGEVKDRTRVGERIAR 363 >gi|323499824|ref|ZP_08104783.1| ribosomal RNA large subunit methyltransferase N [Vibrio sinaloensis DSM 21326] gi|323315065|gb|EGA68117.1| ribosomal RNA large subunit methyltransferase N [Vibrio sinaloensis DSM 21326] Length = 374 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 142/365 (38%), Positives = 204/365 (55%), Gaps = 21/365 (5%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 +K +L+ R+ L + R Q+ KWIY G+ +F M++I++++R Sbjct: 2 TTEKINLLDFDRQGLRKFFAD---ELGEKAFRADQVMKWIYHFGVDNFDNMTNINKKLRE 58 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L + I+ P + + + S DGT KW ++ ++ETVYIPE R TLCVSSQV Sbjct: 59 KLQRRCEIVAPTVAEAQHSSDGTIKWAMKVGD------QDVETVYIPEDDRATLCVSSQV 112 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L C FC T Q RNL EI+ QV A +G + + R I+N+ Sbjct: 113 GCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREIG----------LEKETGRRPITNV 162 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL N N+ +L + D +G SKRR+T+STSG V + ++ +I V LAIS Sbjct: 163 VMMGMGEPLLNMKNLIPALELMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAIS 222 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300 LHA ++ LR+ ++PIN ++ +E + + R Y SNA R +T EYV+L +ND A Sbjct: 223 LHAPNDKLRSDIMPINDRWDIEDFLASVRRYIQSSNANRGKVTVEYVLLDHVNDDMDHAR 282 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L ++LK P KINLIPFNP+PG Y I F + + + ++ +R RG DI A Sbjct: 283 ELAELLKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDA 342 Query: 361 ACGQL 365 ACGQL Sbjct: 343 ACGQL 347 >gi|154685991|ref|YP_001421152.1| YloN [Bacillus amyloliquefaciens FZB42] gi|205829638|sp|A7Z4J5|RLMN_BACA2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|154351842|gb|ABS73921.1| YloN [Bacillus amyloliquefaciens FZB42] Length = 363 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 116/368 (31%), Positives = 200/368 (54%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 ++ S+ +E+++ L + G R +QI++W+Y + + F M+++S+ +R L Sbjct: 16 EQPSIYSFELDEIKQWLTENG----EKPFRAAQIFEWLYEKRVSSFDEMTNLSKSLREKL 71 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +F + + ++ S DGT K+L IETV + + ++CV++QVGC Sbjct: 72 ESNFVLTTLKTAVKQTSQDGTMKFLFELHD-----GYTIETVLMRHEYGNSVCVTTQVGC 126 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 127 RIGCTFCASTLGGLKRNLEAGEIVAQVVKVQKALDE--------------TDERVSSVVI 172 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP NF+ + L I + GL+ R IT+STSG +P I ++ + + AISL Sbjct: 173 MGIGEPFDNFNEMLAFLKIINHDKGLNIGARHITVSTSGIIPKIYDFADQKMQINFAISL 232 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA + ++R+ L+PIN+ Y L L++A ++Y + RI+FEY + G+ND A L Sbjct: 233 HAPNTEIRSRLMPINKAYKLPDLMEAVKYYIEKTGR-RISFEYGLFGGVNDQVEHAEELA 291 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK + +NLIP N P +Y+ + + I F + +K G + IR +G DI AACG Sbjct: 292 ELLKDVKCHVNLIPVNYVPERDYVRTPRDQIFAFEKTLKSRGVNVTIRREQGHDIDAACG 351 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 352 QLRAKERQ 359 >gi|315161444|gb|EFU05461.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0645] Length = 357 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 134/379 (35%), Positives = 218/379 (57%), Gaps = 26/379 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++KES+ G+ RE+L + L G + R +Q+W+W+Y + + F MS+IS+ + L Sbjct: 1 MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNISKSLMTL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L ++FS+ + V + + DGT K+L P + + IETV + ++ ++CV++QVG Sbjct: 57 LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+LTA EI+ Q++ + + + ++S++V Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYFDE------------RGLDERVSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+ NV L +D GL+ R IT+STSG VP I + + V LAIS Sbjct: 160 VMGIGEPFDNYANVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N++R ++ INR +P+E L+ A Y +N R+TFEY+ML +ND P A L Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMVAIDEYIEKNNR-RVTFEYIMLSQVNDRPEHAQQL 278 Query: 303 IKILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 +L+ + +NLIP+NP + Y S ++ ++ F + +K++G + IR G DI Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338 Query: 360 AACGQLKSLSKRIPKVPRQ 378 AACGQL+S + KV Q Sbjct: 339 AACGQLRSKQMKKEKVKNQ 357 >gi|296331150|ref|ZP_06873624.1| ribosomal RNA large subunit methyltransferase N [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674306|ref|YP_003865978.1| putative Fe-S-cluster AdoMet radical enzyme [Bacillus subtilis subsp. spizizenii str. W23] gi|296151794|gb|EFG92669.1| ribosomal RNA large subunit methyltransferase N [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412550|gb|ADM37669.1| putative Fe-S-cluster AdoMet radical enzyme [Bacillus subtilis subsp. spizizenii str. W23] Length = 363 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 120/368 (32%), Positives = 202/368 (54%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 ++ S+ +E+++ L G R +QI++W+Y + + F+ M+++S+++R L Sbjct: 16 ERPSIYSFELDEIKQWLTDNG----EKPFRAAQIFEWLYEKRVSSFEEMTNLSKDLREKL 71 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + HF + + ++ S DGT K+L IETV + + ++CV++QVGC Sbjct: 72 SAHFEMTTLKTAVKQTSQDGTMKFLFELHD-----GYTIETVLMRHEYGNSVCVTTQVGC 126 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QVL + L + ++S++V+ Sbjct: 127 RIGCTFCASTLGGLKRNLEAGEIVAQVLKVQKALDE--------------TDERVSSVVI 172 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP NF+ + L I + GL+ R IT+STSG +P I ++ + + AISL Sbjct: 173 MGIGEPFDNFNEMLAFLKIINHDKGLNIGARHITVSTSGIIPKIYEFADQQMQINFAISL 232 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA + ++R+ L+PINR Y L L++A ++Y + RI+FEY + G+ND A L Sbjct: 233 HAPNTEIRSRLMPINRAYKLPDLMEAVKYYINKTGR-RISFEYGLFGGVNDQVEHAEELA 291 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +L+GI +NLIP N P +Y+ + + I F + +K G + IR +G DI AACG Sbjct: 292 DLLEGIKCHVNLIPVNYVPERDYVRTPRDQIFAFEKTLKSRGVNVTIRREQGHDIDAACG 351 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 352 QLRAKERQ 359 >gi|296133296|ref|YP_003640543.1| radical SAM enzyme, Cfr family [Thermincola sp. JR] gi|296031874|gb|ADG82642.1| radical SAM enzyme, Cfr family [Thermincola potens JR] Length = 356 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 124/363 (34%), Positives = 192/363 (52%), Gaps = 28/363 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L + EEL L+++G R QI W++ +G+ + M+++ +R L++ Sbjct: 5 TNLKDLSLEELTAFLIELG----EKPFRAKQIADWVFKKGVAEIADMTNLPLSLRERLSK 60 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I EI+ E+ S DGT K+L +ETV++ ++CVS+QVGC + Sbjct: 61 TAYIGRLEIMKEQQSRDGTTKYLFEL-----ADGNTVETVFLKHNYGNSVCVSTQVGCKM 115 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC + RNL+ EI QVL +++S++V+MG Sbjct: 116 GCLFCASTIGGFYRNLSPGEIYDQVLRIEQ-----------------DKKKRVSSVVIMG 158 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 GEPL N++ V K + + + L+ R ITLST G VP I ++ EE + + L++SLHA Sbjct: 159 SGEPLDNYEAVLKFIRLITAPYALNVGMRHITLSTCGLVPQIYKLAEEKLALTLSVSLHA 218 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +N+LRN L+P+NRKYPLE LI AC Y + RITFEY ++K +NDS A L ++ Sbjct: 219 PNNELRNKLMPVNRKYPLEELIPACHEYIKKTGR-RITFEYTLIKDVNDSQGHAEELARL 277 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +KG+ +NLIP NP + + + F ++R+ + +R G DI AACGQL Sbjct: 278 IKGMLCHVNLIPVNPVAERRWYRPSTETVKRFQTILERNRVPATVRREMGTDIDAACGQL 337 Query: 366 KSL 368 + Sbjct: 338 RRK 340 >gi|70726698|ref|YP_253612.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus haemolyticus JCSC1435] gi|123776132|sp|Q4L5R9|RLMN_STAHJ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|68447422|dbj|BAE05006.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 364 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 123/370 (33%), Positives = 208/370 (56%), Gaps = 25/370 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K+S+ + +E++E L++ G + R QI++W+Y + + M+++S+++R +L Sbjct: 17 EKQSIYSLRYDEMQEWLVEHG----QQKFRAKQIFEWLYQKRVDSIDDMTNLSKDLRQVL 72 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +F++ V ++ S DGT K+L IETV + ++CV++QVGC Sbjct: 73 KDNFAMTTLTTVVKQESKDGTIKFLFELQD-----GYTIETVLMRHDYGNSVCVTTQVGC 127 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QVL + + + ++S IV+ Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQK--------------ALDATDERVSQIVI 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+D + L I +D L+ R IT+STSG +P I EE I + A+SL Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVSL 233 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++R+ L+PINR Y ++ L++A ++Y +N R+TFEY + G+ND A +L Sbjct: 234 HAAKDEIRSKLMPINRAYHVDKLMEAIKYYQEKTNR-RVTFEYGLFGGVNDQLEHARDLA 292 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++K + +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AACG Sbjct: 293 HLIKDLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAACG 352 Query: 364 QLKSLSKRIP 373 QL++ +++ Sbjct: 353 QLRAKERQVE 362 >gi|153873084|ref|ZP_02001783.1| conserved hypothetical protein [Beggiatoa sp. PS] gi|152070449|gb|EDN68216.1| conserved hypothetical protein [Beggiatoa sp. PS] Length = 358 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 155/355 (43%), Positives = 207/355 (58%), Gaps = 15/355 (4%) Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75 +L ++G R +Q+ KWI+ + + DF M+++S+ +R L + I P++ Sbjct: 2 DLPPFFEELG----EKPFRATQVMKWIHQQAVLDFDAMTNLSKTLRQRLKEIACISLPQV 57 Query: 76 VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135 +IS D TRKWLL+ IE V+IPE RGTLC+SSQ+GC+L CSFC T Sbjct: 58 YKTQISQDDTRKWLLQL-----DNGNSIEMVFIPEDGRGTLCISSQIGCALDCSFCATAQ 112 Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195 Q RNL EI+ Q+ LA L + R ISN+VMMGMGEPL N + Sbjct: 113 QGFNRNLNTAEIIAQLWLAEHQLCSTKDDRP------KNYQRTISNVVMMGMGEPLTNLN 166 Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILV 255 NV K++ I D G S +RITLST+G VP R+ E+ V LA+SLHA + LR+ LV Sbjct: 167 NVIKAIKIMKDDFGYGLSWQRITLSTAGIVPAFKRLKEQCPVSLAVSLHAPDDALRDQLV 226 Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINL 315 PIN+KYP+ L+ ACR Y R ITFEY+MLK INDS A L+K+++GIPAK+NL Sbjct: 227 PINKKYPINELLAACRAYVKGEPRRTITFEYIMLKNINDSQSHAHALVKLIQGIPAKVNL 286 Query: 316 IPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 IPFN +P Y S K I F + + ++G + R RG DI AACGQL + Sbjct: 287 IPFNTFPDTPYQSSSIKTIDDFRDILLKAGLITITRKTRGDDIDAACGQLAGKVR 341 >gi|90579368|ref|ZP_01235178.1| hypothetical protein VAS14_06663 [Vibrio angustum S14] gi|90440201|gb|EAS65382.1| hypothetical protein VAS14_06663 [Vibrio angustum S14] Length = 373 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 150/384 (39%), Positives = 210/384 (54%), Gaps = 24/384 (6%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M + K +L+ R+ L + + R QI KWIY G DF M++I++++ Sbjct: 1 MTTV-KINLLDFDRKGLRKYFAE---ELNEKPFRADQIMKWIYHFGCDDFDQMTNINKKL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L + I P + + + S DGT KW +R ++ETVYIP++ R TLCVSS Sbjct: 57 REKLKRVAEIRAPYVSEAQHSTDGTIKWAMRVGD------QDVETVYIPDEDRATLCVSS 110 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC+L C FC T Q RNL EI+ QV A +G + + R I+ Sbjct: 111 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKEIG----------VQKETGRRPIT 160 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 NIVMMGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ I V LA Sbjct: 161 NIVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGNIDVALA 220 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRD 298 ISLHA +++LR+ ++PIN ++ +E +D R Y +N R+T EYV+L +ND Sbjct: 221 ISLHAPTDELRSQIMPINDRWNIEAFLDVVRRYVNSTNANRGRVTVEYVLLDHVNDDMEH 280 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L K+LK PAKINLIPFNP+PG Y I F + + ++ +R RG DI Sbjct: 281 ARQLAKVLKDTPAKINLIPFNPYPGSPYKKPSNSRIDRFMKTLMEYDFTVTVRKTRGDDI 340 Query: 359 LAACGQLKSLSKRIPKVPRQEMQI 382 AACGQL I + R + ++ Sbjct: 341 DAACGQLVGDV--IDRTKRTQAKL 362 >gi|205829948|sp|Q3BTW5|RLMN_XANC5 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase Length = 401 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 163/383 (42%), Positives = 226/383 (59%), Gaps = 28/383 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K++L+ + RE LE R R Q+ KWI+ R + DF M+D+ + +R L Sbjct: 21 RKQNLLDLDREGLERFFAD---TLGEARYRAHQVMKWIHHRYVTDFDQMTDLCKALRAKL 77 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +QH ++ P +V +K S DGT KWLL A G IETVYIP+K RGTLCVSSQVGC Sbjct: 78 HQHAEVLVPNVVFDKPSADGTHKWLLAMGA---DGKNAIETVYIPDKGRGTLCVSSQVGC 134 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 L C+FC T TQ RNLT EI+ QV +A LG+ +P R+++N+VM Sbjct: 135 GLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVVM 183 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SLH Sbjct: 184 MGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLH 243 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALNLI 303 A ++ LR LVP+N+KYP+ L+++C Y +TFEY ++KGIND P A L Sbjct: 244 AANDTLRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLA 303 Query: 304 KILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 ++++ K+NLIPFNP+PG Y S + +I F + + + + +R RG Sbjct: 304 RLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRG 363 Query: 356 LDILAACGQLKSLSKRIPKVPRQ 378 DI AACGQLK + + RQ Sbjct: 364 DDIDAACGQLKGQV--MDRTRRQ 384 >gi|28897379|ref|NP_796984.1| ribosomal RNA large subunit methyltransferase N [Vibrio parahaemolyticus RIMD 2210633] gi|153838534|ref|ZP_01991201.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus AQ3810] gi|260363554|ref|ZP_05776383.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus K5030] gi|260876339|ref|ZP_05888694.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus AN-5034] gi|260898610|ref|ZP_05907106.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus Peru-466] gi|260899290|ref|ZP_05907685.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus AQ4037] gi|81728415|sp|Q87S19|RLMN_VIBPA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|28805591|dbj|BAC58868.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|149748049|gb|EDM58908.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus AQ3810] gi|308086920|gb|EFO36615.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus Peru-466] gi|308092880|gb|EFO42575.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus AN-5034] gi|308106603|gb|EFO44143.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus AQ4037] gi|308113028|gb|EFO50568.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus K5030] Length = 375 Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 141/365 (38%), Positives = 204/365 (55%), Gaps = 21/365 (5%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 +K +L+ R+ + + + R Q+ KWIY G+ DF M++I++++R Sbjct: 2 TTEKINLLDFDRKGMRQFFAE---ELGEKAFRADQVMKWIYHFGVDDFDNMTNINKKLRE 58 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L I P + + + S DGT KW ++ ++ETVYIPE+ R TLCVSSQV Sbjct: 59 KLQHKCEIKAPTVAEAQHSSDGTIKWAMKVGD------QDVETVYIPEEDRATLCVSSQV 112 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L C FC T Q RNL EI+ QV A +G + + R I+N+ Sbjct: 113 GCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREIG----------LQKETGRRPITNV 162 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ +I V LAIS Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAIS 222 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300 LHA ++ LR+ ++PIN ++ ++ + + R Y SNA R +T EYV+L +ND A Sbjct: 223 LHAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMGHAR 282 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L +++K P KINLIPFNP+PG Y I F + + + ++ +R RG DI A Sbjct: 283 ELAELMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDA 342 Query: 361 ACGQL 365 ACGQL Sbjct: 343 ACGQL 347 >gi|254506728|ref|ZP_05118868.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus 16] gi|219550309|gb|EED27294.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus 16] Length = 374 Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 144/380 (37%), Positives = 206/380 (54%), Gaps = 23/380 (6%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 +K +L+ R+ + + R Q+ KWIY G+ +F M++I++++R Sbjct: 2 TTEKINLLDFDRQGMRKFFAD---ELGEKAFRADQVMKWIYHFGVDNFDNMTNINKKLRE 58 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L I P + + + S DGT KW ++ ++ETVYIPE R TLCVSSQV Sbjct: 59 KLQHRCEIKAPTVAEAQHSSDGTIKWAMKVGD------QDVETVYIPEDDRATLCVSSQV 112 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L C FC T Q RNL EI+ QV A +G + + R I+N+ Sbjct: 113 GCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREIG----------LEKETGRRPITNV 162 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ +I V LAIS Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAIS 222 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300 LHA ++ LR+ ++PIN ++ ++ + + R Y SNA R +T EYV+L +ND A Sbjct: 223 LHAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHAR 282 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L +++K P KINLIPFNP+PG Y I F + + + ++ IR RG DI A Sbjct: 283 ELAELMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDA 342 Query: 361 ACGQLKSLSKRIPKVPRQEM 380 ACGQL I + R M Sbjct: 343 ACGQLVGDV--IDRTKRTAM 360 >gi|146329686|ref|YP_001209425.1| hypothetical protein DNO_0514 [Dichelobacter nodosus VCS1703A] gi|205829748|sp|A5EVN1|RLMN_DICNV RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|146233156|gb|ABQ14134.1| conserved hypothetical protein [Dichelobacter nodosus VCS1703A] Length = 364 Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 153/377 (40%), Positives = 221/377 (58%), Gaps = 20/377 (5%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 +K +L + L + + G R Q+ KW+Y + DF+ M+D+S+++R Sbjct: 1 MTEKINLFDYTPKALADWFVAQG----EQPFRAKQVLKWLYHERVYDFERMTDLSKKLRA 56 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 +L++ +I P+++ +K + DGTRKW+ ++ IE V+IPE RGTLC+SSQ Sbjct: 57 MLSEKACVILPQVIADKTARDGTRKWVFQYAC-----TNSIEAVFIPEDDRGTLCISSQA 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L C FC T RNLT EI++QV LA+ L+ R I+N+ Sbjct: 112 GCALACPFCSTARAGFNRNLTTGEIVVQVWLAKELV----------HCERNGNSRLITNV 161 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 V+MGMGEPL NF+ V + I G SKRR+TLSTSG VP I ++ E + LA+S Sbjct: 162 VLMGMGEPLINFNQVLPATEIFMSDWGFGLSKRRVTLSTSGVVPAIHKLREVTDLSLAVS 221 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALN 301 LHA +++LRN +VPIN++Y L+ LI+AC Y + IT+EYVMLKG+ND+ A Sbjct: 222 LHAPNDELRNKIVPINQRYGLKALIEACALYAENNKQHGGITWEYVMLKGVNDTLEHAQQ 281 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L +L+ +P KINLIPFN +P + CS +DIV F + ++++GY + IR RG DI AA Sbjct: 282 LADLLRNVPGKINLIPFNEFPNSPFQCSSWEDIVRFQQFLQKAGYIATIRKTRGDDIDAA 341 Query: 362 CGQLKSLSKRIPKVPRQ 378 CGQL + RQ Sbjct: 342 CGQLVGRVNDRIRRERQ 358 >gi|197336065|ref|YP_002155383.1| radical SAM enzyme, Cfr family [Vibrio fischeri MJ11] gi|254807222|sp|B5FAW9|RLMN_VIBFM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|197317555|gb|ACH67002.1| radical SAM enzyme, Cfr family [Vibrio fischeri MJ11] Length = 372 Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 145/381 (38%), Positives = 208/381 (54%), Gaps = 23/381 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ R+ L + R Q+ KW+Y G DF M++I++++R L Sbjct: 5 KINLLDFDRKGLRAFFSE---ELGEKAFRADQVMKWMYHFGCDDFDQMNNINKKLREKLK 61 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I P + + + S DGT KW ++ ++ETVYIP+ R TLCVSSQVGC+ Sbjct: 62 NKCEIRAPYVSEAQHSSDGTIKWAMKVGD------QDVETVYIPDGDRATLCVSSQVGCA 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ Q+ A +G + + R I+N+VMM Sbjct: 116 LECKFCSTAQQGFNRNLKVSEIVGQIWRAAREIG----------LEKETGRRPITNVVMM 165 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N N+ +L I D +G + SKRR+T+STSG V + ++ +I V LAISLHA Sbjct: 166 GMGEPLLNMKNLIPALEIMLDDLGFALSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHA 225 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNLI 303 +++LR+ ++PIN ++ ++ + + R Y SN R+T EYV+L +ND A L Sbjct: 226 PTDELRSQIMPINDRWDIDAFLASVRRYIASSNANRGRVTVEYVLLDHVNDDMDHARQLA 285 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK PAKINLIPFNP+PG Y I F + + Y+ IR RG DI AACG Sbjct: 286 ELLKDTPAKINLIPFNPYPGSPYKKPSNSRIDRFMKTLMEYDYTVTIRKTRGDDIDAACG 345 Query: 364 QLKSLSKRIPKVPRQEMQITG 384 QL I + R +++ G Sbjct: 346 QLVGDV--IDRTKRTKVKQQG 364 >gi|62260668|gb|AAX77923.1| unknown protein [synthetic construct] Length = 405 Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 157/388 (40%), Positives = 230/388 (59%), Gaps = 24/388 (6%) Query: 1 MNFLK--KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQ 58 M ++ K +L+G+ ++ +E+ + IG + Q++KWI+ +G+ DF M+D+ + Sbjct: 24 MLEMQQDKVNLLGLNQKAIEDFFISIG----EKKFHARQVFKWIHKKGVIDFDAMTDLGK 79 Query: 59 EVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118 +RH L + I P++V K S DGT KWL+ G +ETV+I + RGTLCV Sbjct: 80 NLRHKLKEKAQITIPKVVFSKASKDGTHKWLIDV------GGSAVETVFILAEGRGTLCV 133 Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 SSQVGC+L CSFC TG Q RNL+A E++ Q+ +A L G D Sbjct: 134 SSQVGCTLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFT---------- 183 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238 ++NIVMMGMGEPL NF+NV ++ I D + S+R++TLSTSG VP I + E+ GV Sbjct: 184 VTNIVMMGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVS 243 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLHA ++ LRN +VPIN+KY ++ L++AC+ Y + ITFEY +++ +ND+ D Sbjct: 244 LAVSLHAPNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLIEEVNDNLSD 303 Query: 299 ALNLIKILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 A L+ +LK PAKINLIPFNP+PG Y I F E ++ +G+ + +R RG Sbjct: 304 AEELVALLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGD 363 Query: 357 DILAACGQLKSLSKRIPKVPRQEMQITG 384 DI AACGQL ++ ++ G Sbjct: 364 DIDAACGQLAGDVMDKTNRKQRYLKKLG 391 >gi|285018369|ref|YP_003376080.1| hypothetical protein XALc_1591 [Xanthomonas albilineans GPE PC73] gi|283473587|emb|CBA16090.1| conserved hypothetical protein 48 [Xanthomonas albilineans] Length = 401 Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 164/382 (42%), Positives = 225/382 (58%), Gaps = 28/382 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 +++L+ + RE LE + R R Q+ KWI+ R + DF+ M+D+ + +R L Sbjct: 22 RQNLLDLDREGLERFFAE---TLGEARYRAHQVMKWIHHRYVTDFEQMTDLGKALRAKLQ 78 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 QH +I P IV +K S DGT KWLL + G IETVYIP+K RGTLCVSSQVGC Sbjct: 79 QHAEVIVPNIVFDKPSADGTHKWLLAM---GVDGKNAIETVYIPDKGRGTLCVSSQVGCG 135 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC T TQ RNL+ EI+ QV +A LG+ +P R+++N+VMM Sbjct: 136 LNCSFCSTATQGFNRNLSTAEIVGQVWVAARHLGN-----------VPHQQRRLTNVVMM 184 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SLHA Sbjct: 185 GMGEPLMNFDNVVRAMSVMRDDLGYGLANKRVTLSTSGLVPQIDRLSGESDVSLAVSLHA 244 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGL-SNARRITFEYVMLKGINDSPRDALNLIK 304 ++ LR LVP+N+KYP+ L+ AC Y +TFEY ++KGIND P A L + Sbjct: 245 PNDTLRETLVPLNKKYPIAELMAACARYLRANKRRESVTFEYTLMKGINDQPEHARQLAR 304 Query: 305 ILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 +++ K+NLIPFNP+PG Y S + +I F + + + + +R RG Sbjct: 305 LMRQFDNAVQAANAGKVNLIPFNPFPGTRYARSGETEIRAFQKILLDAQVLTMVRRTRGD 364 Query: 357 DILAACGQLKSLSKRIPKVPRQ 378 DI AACGQLK + + RQ Sbjct: 365 DIDAACGQLKGQV--MDRTRRQ 384 >gi|291484127|dbj|BAI85202.1| hypothetical protein BSNT_02588 [Bacillus subtilis subsp. natto BEST195] Length = 363 Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 119/368 (32%), Positives = 202/368 (54%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 ++ S+ +E+++ L G R +QI++W+Y + + F+ M+++S+++R L Sbjct: 16 ERPSIYSFELDEIKQWLTDNG----EKPFRAAQIFEWLYEKRVSSFEEMTNLSKDLREKL 71 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 N HF + + ++ S DGT K+L IETV + + ++CV++QVGC Sbjct: 72 NTHFVLTTLKTAVKQTSQDGTMKFLFELHD-----GYTIETVLMRHEYGNSVCVTTQVGC 126 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 127 RIGCTFCASTLGGLKRNLEAGEIVAQVVKVQKALDE--------------TDERVSSVVI 172 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP NF+ + L I + GL+ R IT+STSG +P I ++ + + AISL Sbjct: 173 MGIGEPFDNFNEMLAFLKIINHDKGLNIGARHITVSTSGIIPKIYEFADQQMQINFAISL 232 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA + ++R+ L+PINR Y L L++A ++Y + RI+FEY + G+ND A L Sbjct: 233 HAPNTEIRSRLMPINRAYKLPDLMEAVKYYINKTGR-RISFEYGLFGGVNDQVEHAEELA 291 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +L+G+ +NLIP N P +Y+ + + I F + +K G + IR +G DI AACG Sbjct: 292 DLLEGVKCHVNLIPVNYVPERDYVRTPRDQIFAFEKTLKSRGVNVTIRREQGHDIDAACG 351 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 352 QLRAKERQ 359 >gi|156502452|ref|YP_001428517.1| radical SAM enzyme, Cfr family protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|205829764|sp|A7NC58|RLMN_FRATF RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|156253055|gb|ABU61561.1| radical SAM enzyme, Cfr family protein [Francisella tularensis subsp. holarctica FTNF002-00] Length = 370 Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 157/378 (41%), Positives = 228/378 (60%), Gaps = 24/378 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K +L+G+ ++ +E+ + IG + Q++KWI+ +G+ DF M+D+ + +RH L Sbjct: 4 DKVNLLGLNQKAIEDFFISIG----KKKFHARQVFKWIHKKGVIDFDAMTDLGKNLRHKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I P++V K S DGT KWL+ G +ETV+IPE+ RGTLCVSSQ+GC Sbjct: 60 KDKAQITIPKVVFSKASKDGTHKWLIDV------GGSAVETVFIPEEGRGTLCVSSQIGC 113 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L CSFC TG Q RNL+A E++ Q+ +A L G D ++NIVM Sbjct: 114 TLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFT----------VTNIVM 163 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NF+NV ++ I D + S+R++TLSTSG VP I + E+ GV LA+SLH Sbjct: 164 MGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLH 223 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 ++ LRN +VPIN+KY ++ L++AC+ Y + ITFEY +++ +ND+ DA L+ Sbjct: 224 TPNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEVNDNLSDAEELVA 283 Query: 305 ILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK PAKINLIPFNP+PG Y I F E ++ +G+ + +R RG DI AAC Sbjct: 284 LLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAAC 343 Query: 363 GQLKSLSKRIPKVPRQEM 380 GQL + K R+++ Sbjct: 344 GQLAGDV--MDKTNRKQI 359 >gi|78047623|ref|YP_363798.1| radical SAM superfamily protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036053|emb|CAJ23744.1| radical SAM superfamily protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 405 Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 163/383 (42%), Positives = 226/383 (59%), Gaps = 28/383 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K++L+ + RE LE R R Q+ KWI+ R + DF M+D+ + +R L Sbjct: 25 RKQNLLDLDREGLERFFAD---TLGEARYRAHQVMKWIHHRYVTDFDQMTDLCKALRAKL 81 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +QH ++ P +V +K S DGT KWLL A G IETVYIP+K RGTLCVSSQVGC Sbjct: 82 HQHAEVLVPNVVFDKPSADGTHKWLLAMGA---DGKNAIETVYIPDKGRGTLCVSSQVGC 138 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 L C+FC T TQ RNLT EI+ QV +A LG+ +P R+++N+VM Sbjct: 139 GLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVVM 187 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV +++S+ D +G + +R+TLSTSG VP I R+ E V LA+SLH Sbjct: 188 MGMGEPLMNFDNVVRAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLH 247 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVMLKGINDSPRDALNLI 303 A ++ LR LVP+N+KYP+ L+++C Y +TFEY ++KGIND P A L Sbjct: 248 AANDTLRESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLA 307 Query: 304 KILKGIP--------AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 ++++ K+NLIPFNP+PG Y S + +I F + + + + +R RG Sbjct: 308 RLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRG 367 Query: 356 LDILAACGQLKSLSKRIPKVPRQ 378 DI AACGQLK + + RQ Sbjct: 368 DDIDAACGQLKGQV--MDRTRRQ 388 >gi|308173538|ref|YP_003920243.1| Fe-S-cluster AdoMet radical enzyme [Bacillus amyloliquefaciens DSM 7] gi|307606402|emb|CBI42773.1| putative Fe-S-cluster AdoMet radical enzyme [Bacillus amyloliquefaciens DSM 7] Length = 363 Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 117/368 (31%), Positives = 201/368 (54%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 ++ S+ +E+++ L + G R +QI++W+Y + + F M+++S+ +R L Sbjct: 16 EQPSIYSFELDEIKQWLTENG----EKPFRAAQIFEWLYEKRVSSFDEMTNLSKSLREKL 71 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +F + + ++ S DGT K+L IETV + + ++CV++QVGC Sbjct: 72 ESNFVMTTMKTAVKQTSQDGTMKFLFELHD-----GYTIETVLMRHEYGNSVCVTTQVGC 126 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 127 RIGCTFCASTLGGLKRNLEAGEIVAQVVKVQKALDE--------------TDERVSSVVI 172 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP NF+ + L I + GL+ R IT+STSG +P I ++ + + AISL Sbjct: 173 MGIGEPFDNFNEMLAFLKIINHDKGLNIGARHITVSTSGIIPKIYDFADQKMQINFAISL 232 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA + ++R+ L+PIN+ Y L L++A ++Y + RI+FEY + G+ND A L Sbjct: 233 HAPNTEIRSRLMPINKAYKLPDLMEAVKYYIEKTGR-RISFEYGLFGGVNDQVEHAEELA 291 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LKG+ +NLIP N P +Y+ + + I F + +K G + IR +G DI AACG Sbjct: 292 ELLKGVKCHVNLIPVNYVPERDYVRTPRDQIFAFEKTLKSRGVNVTIRREQGHDIDAACG 351 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 352 QLRAKERQ 359 >gi|28199501|ref|NP_779815.1| hypothetical protein PD1624 [Xylella fastidiosa Temecula1] gi|81585666|sp|Q87B36|RLMN_XYLFT RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829942|sp|B2I7V5|RLMN_XYLF2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|28057616|gb|AAO29464.1| conserved hypothetical protein [Xylella fastidiosa Temecula1] gi|307578508|gb|ADN62477.1| hypothetical protein XFLM_02390 [Xylella fastidiosa subsp. fastidiosa GB514] Length = 406 Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 159/383 (41%), Positives = 221/383 (57%), Gaps = 28/383 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K++L+ + RE LE + R R Q+ KWI+ R + DF+ M+D+ + +R L Sbjct: 26 RKQNLLELDREGLERFFEDV---LGEKRYRAHQVMKWIHHRYVADFEQMTDVGKALRTRL 82 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + P +V +K S DGT KWLL IETVYIP+K RGTLCVSSQ+GC Sbjct: 83 QACAEVRVPRVVFDKHSADGTHKWLLAM---GTDRKNAIETVYIPDKGRGTLCVSSQIGC 139 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 L C+FC T TQ RNLT EI+ QV +A LG+ +P R+++N+VM Sbjct: 140 GLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVVM 188 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV +++S+ D +G S +R+TLSTSG VP I R+ E V LA+SLH Sbjct: 189 MGMGEPLMNFDNVVRAMSVMRDDLGYGLSNKRVTLSTSGLVPMIDRLSTESDVSLAVSLH 248 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGL-SNARRITFEYVMLKGINDSPRDALNLI 303 A ++ LR LVP+N+KYP+ L+ +C Y + +TFEY ++KG+ND A L Sbjct: 249 APNDKLREQLVPLNKKYPIVELMASCERYLSVNRKRDSVTFEYTLMKGVNDKQEHAHELA 308 Query: 304 KILKGIPA--------KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 K+++ K+NLIPFNP+PG Y S + DI F + + + + +R RG Sbjct: 309 KLMRQFDCAMQVKGAAKVNLIPFNPFPGTCYERSTEVDIRAFQKILLDAQILAMVRRTRG 368 Query: 356 LDILAACGQLKSLSKRIPKVPRQ 378 DI AACGQLK + + RQ Sbjct: 369 DDIDAACGQLKGQV--VDRTRRQ 389 >gi|59711233|ref|YP_204009.1| hypothetical protein VF_0626 [Vibrio fischeri ES114] gi|75354452|sp|Q5E775|RLMN_VIBF1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|59479334|gb|AAW85121.1| predicted enzyme [Vibrio fischeri ES114] Length = 372 Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 145/381 (38%), Positives = 208/381 (54%), Gaps = 23/381 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ R+ L + R Q+ KW+Y G DF M++I++++R L Sbjct: 5 KINLLDFDRKGLRAFFSE---ELGEKAFRADQVMKWMYHFGCDDFDQMNNINKKLREKLK 61 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I P + + + S DGT KW ++ ++ETVYIP+ R TLCVSSQVGC+ Sbjct: 62 HKCEIRAPYVSEAQHSSDGTIKWAMKVGD------QDVETVYIPDGDRATLCVSSQVGCA 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ Q+ A +G + + R I+N+VMM Sbjct: 116 LECKFCSTAQQGFNRNLKVSEIVGQIWRAAREIG----------LEKETGRRPITNVVMM 165 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N N+ +L I D +G + SKRR+T+STSG V + ++ +I V LAISLHA Sbjct: 166 GMGEPLLNMKNLIPALEIMLDDLGFALSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHA 225 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNLI 303 +++LR+ ++PIN ++ ++ + + R Y SN R+T EYV+L +ND A L Sbjct: 226 PTDELRSQIMPINDRWDIDAFLASVRRYIASSNANRGRVTVEYVLLDHVNDDMDHARQLA 285 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LK PAKINLIPFNP+PG Y I F + + Y+ IR RG DI AACG Sbjct: 286 ELLKDTPAKINLIPFNPYPGSPYKKPSNSRIDRFMKTLMEYDYTVTIRKTRGDDIDAACG 345 Query: 364 QLKSLSKRIPKVPRQEMQITG 384 QL I + R +++ G Sbjct: 346 QLVGDV--IDRTKRTKVKQQG 364 >gi|321315341|ref|YP_004207628.1| ribosomal RNA large subunit methyltransferase N [Bacillus subtilis BSn5] gi|320021615|gb|ADV96601.1| ribosomal RNA large subunit methyltransferase N [Bacillus subtilis BSn5] Length = 363 Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 119/368 (32%), Positives = 202/368 (54%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 ++ S+ +E+++ L G R +QI++W+Y + + F+ M+++S+++R L Sbjct: 16 ERPSIYSFELDEIKQWLTDNG----EKPFRAAQIFEWLYEKRVSSFEDMTNLSKDLREKL 71 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 N HF + + ++ S DGT K+L IETV + + ++CV++QVGC Sbjct: 72 NTHFVLTTLKTAVKQTSQDGTMKFLFELHD-----GYTIETVLMRHEYGNSVCVTTQVGC 126 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 127 RIGCTFCASTLGGLKRNLEAGEIVAQVVKVQKALDE--------------TDERVSSVVI 172 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP NF+ + L I + GL+ R IT+STSG +P I ++ + + AISL Sbjct: 173 MGIGEPFDNFNEMLAFLKIINHDKGLNIGARHITVSTSGIIPKIYEFADQQMQINFAISL 232 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA + ++R+ L+PINR Y L L++A ++Y + RI+FEY + G+ND A L Sbjct: 233 HAPNTEIRSRLMPINRAYKLPDLMEAVKYYINKTGR-RISFEYGLFGGVNDQVEHAEELA 291 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +L+G+ +NLIP N P +Y+ + + I F + +K G + IR +G DI AACG Sbjct: 292 DLLEGVKCHVNLIPVNYVPERDYVRTPRDQIFAFEKTLKSRGVNVTIRREQGHDIDAACG 351 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 352 QLRAKERQ 359 >gi|134301956|ref|YP_001121925.1| radical SAM protein [Francisella tularensis subsp. tularensis WY96-3418] gi|205829767|sp|A4IY03|RLMN_FRATW RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|134049733|gb|ABO46804.1| radical SAM enzyme, Cfr family [Francisella tularensis subsp. tularensis WY96-3418] Length = 370 Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 157/382 (41%), Positives = 228/382 (59%), Gaps = 22/382 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K +L+G+ ++ +E+ + IG + Q++KWI+ +G+ DF M+D+ + +RH L Sbjct: 4 DKVNLLGLNQKAIEDFFISIG----EKKFHARQVFKWIHKKGVIDFDAMTDLGKNLRHKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I P++V K S DGT KWL+ G +ETV+I E+ RGTLCVSSQVGC Sbjct: 60 KEKAQITIPKVVFSKASKDGTHKWLIDV------GGSAVETVFILEEGRGTLCVSSQVGC 113 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L CSFC TG Q RNL+A E++ Q+ +A L G D ++NIVM Sbjct: 114 TLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFT----------VTNIVM 163 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NF+NV ++ I D + S+R++TLSTSG VP I + E+ GV LA+SLH Sbjct: 164 MGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLH 223 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++ LRN +VPIN+KY ++ L++AC+ Y + ITFEY +++ +ND+ DA L+ Sbjct: 224 APNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEVNDNLSDAEELVA 283 Query: 305 ILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK PAKINLIPFNP+PG Y I F E ++ +G+ + +R RG DI AAC Sbjct: 284 LLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAAC 343 Query: 363 GQLKSLSKRIPKVPRQEMQITG 384 GQL ++ ++ G Sbjct: 344 GQLAGDVMDKTNRKQRYLKKLG 365 >gi|328472598|gb|EGF43461.1| ribosomal RNA large subunit methyltransferase N [Vibrio parahaemolyticus 10329] Length = 375 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 141/365 (38%), Positives = 204/365 (55%), Gaps = 21/365 (5%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 +K +L+ R+ + + + R Q+ KWIY G+ DF M++I++++R Sbjct: 2 TTEKINLLDFDRKGMRQFFAE---ELGEKAFRADQVMKWIYHFGVDDFDNMTNINKKLRE 58 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L I P + + + S DGT KW ++ ++ETVYIPE+ R TLCVSSQV Sbjct: 59 KLQHKCEIKAPTVAEAQHSSDGTIKWAMKVGD------QDVETVYIPEEDRATLCVSSQV 112 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L C FC T Q RNL EI+ QV A +G + + R I+N+ Sbjct: 113 GCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREIG----------LQKETGRRPITNV 162 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ +I V LAIS Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAIS 222 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300 LHA ++ LR+ ++PIN ++ ++ + + R Y SNA R +T EYV+L +ND A Sbjct: 223 LHAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHAR 282 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L +++K P KINLIPFNP+PG Y I F + + + ++ +R RG DI A Sbjct: 283 ELAELMKETPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDA 342 Query: 361 ACGQL 365 ACGQL Sbjct: 343 ACGQL 347 >gi|307272756|ref|ZP_07554003.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0855] gi|306510370|gb|EFM79393.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0855] Length = 357 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 133/379 (35%), Positives = 217/379 (57%), Gaps = 26/379 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++KES+ G+ RE+L + L G + R +Q+W+W+Y + + F MS+IS+ + L Sbjct: 1 MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNISKSLMTL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L ++FS+ + V + + DGT K+L P + + IETV + ++ ++CV++QVG Sbjct: 57 LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+LTA EI+ Q++ + + + ++S++V Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYFDE------------RGLDERVSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+ NV L +D GL+ R IT+STSG VP I + + V LAIS Sbjct: 160 VMGIGEPFDNYANVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N++R ++ INR +P+E L+ A Y +N R+TFEY+ML +ND P A L Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKTNR-RVTFEYIMLSQVNDRPEHAQQL 278 Query: 303 IKILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 +L+ + +NLIP+NP + Y S ++ ++ F + +K++G + IR G DI Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338 Query: 360 AACGQLKSLSKRIPKVPRQ 378 AA GQL+S + KV Q Sbjct: 339 AAFGQLRSKQMKKEKVKNQ 357 >gi|205373324|ref|ZP_03226128.1| YloN [Bacillus coahuilensis m4-4] Length = 362 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 119/368 (32%), Positives = 206/368 (55%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S+ + +E++ + + G R +Q+++W+Y++ + F+ M+++S+ +R L Sbjct: 15 KKPSIFSLELDEIKNWMSENG----EKPFRAAQVFEWLYIKRVTSFEDMTNLSKPLRDKL 70 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F + + + ++ S DGT K+L IETV + + ++CV++QVGC Sbjct: 71 TESFEMTTLKTLIQQQSSDGTIKFLFELHD-----GYSIETVLMRHEYGNSVCVTTQVGC 125 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QVL + L + ++S++V+ Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVLKVQQALDE--------------TEERVSSVVI 171 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N++++ L ++ GL+ R IT+STSG +P I + +E + AISL Sbjct: 172 MGIGEPFDNYESMMSFLRTINNEKGLNIGARHITVSTSGIIPKIYKFADEKTQINFAISL 231 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA + +LR+ L+PINR Y L L+DA ++Y + R++FEY + G+NDS A L Sbjct: 232 HAANTELRSRLMPINRAYKLPDLMDAVKYYIDKTGR-RVSFEYGLFGGVNDSVEHAEELA 290 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++K + INLIP N P +Y+ + ++ I F + +K+ G + IR +G DI AACG Sbjct: 291 DLVKDVKCHINLIPVNYVPERDYVRTPKEKIFEFEKALKKRGVNVTIRREQGHDIDAACG 350 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 351 QLRAKERK 358 >gi|90410870|ref|ZP_01218884.1| hypothetical protein P3TCK_14595 [Photobacterium profundum 3TCK] gi|90328083|gb|EAS44394.1| hypothetical protein P3TCK_14595 [Photobacterium profundum 3TCK] Length = 373 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 147/383 (38%), Positives = 209/383 (54%), Gaps = 24/383 (6%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M + K +L+ + R+ L + R QI KWIY G DF M++I++++ Sbjct: 1 MTTV-KTNLLDLDRKGLRTYFAE---ELNEKAFRADQIMKWIYQFGCDDFDQMTNINKKL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L + I P + + + S DGT KW +R ++ETVYIP+ R TLCVSS Sbjct: 57 REKLKRVAEIRAPYVSEAQHSVDGTIKWAMRVGD------QDVETVYIPDGDRATLCVSS 110 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC+L C+FC T Q RNL EI+ QV A +G + + R I+ Sbjct: 111 QVGCALACTFCSTAQQGFNRNLRVSEIIGQVWRAAKEIG----------IEKETGRRPIT 160 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ I V LA Sbjct: 161 NVVMMGMGEPLLNMKNLIPALEIMLDDIGFGLSKRRVTVSTSGVVSGLDQMTGNIDVALA 220 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRD 298 ISLHA +++LR+ ++PIN ++ + +++ R Y SN R+T EYV+L +ND Sbjct: 221 ISLHAPTDELRSQIMPINDRFNIATFLESVRRYVEQSNANRGRVTVEYVLLDHVNDDMEH 280 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L +LK PAKINLIPFNP+PG Y I F + + ++ +R RG DI Sbjct: 281 ARQLAVLLKDTPAKINLIPFNPYPGSPYRKPSNSRIDRFMKTLMEYDFTVTVRKTRGDDI 340 Query: 359 LAACGQLKSLSKRIPKVPRQEMQ 381 AACGQL I + R +++ Sbjct: 341 DAACGQLVGDV--IDRTKRTQVK 361 >gi|332527850|ref|ZP_08403887.1| hypothetical protein RBXJA2T_17901 [Rubrivivax benzoatilyticus JA2] gi|332112427|gb|EGJ12220.1| hypothetical protein RBXJA2T_17901 [Rubrivivax benzoatilyticus JA2] Length = 372 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 148/366 (40%), Positives = 205/366 (56%), Gaps = 23/366 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+ E L +G R R Q+++WI+ +G DF MSD+++ +R L Sbjct: 3 VNLLDFDLEGLAAFCDSLG----EKRFRAVQLFRWIHQKGESDFDKMSDLAKSLRGKLAG 58 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + ++ E +S DGT KWL +GG +ETVYIPE RGTLCVSSQ GC++ Sbjct: 59 AAVVESLPVISEHVSADGTTKWLF-----DVGGGNAVETVYIPEDDRGTLCVSSQAGCAV 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG Q RNL+ EI+ Q+ A + P R I N+VMMG Sbjct: 114 GCRFCSTGHQGFSRNLSTGEIIAQLRYAEH------------RLRGPDGQRVIDNVVMMG 161 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N+ V +L + D G S+RR+T+STSG V I R+ E+ V LA+SLHA Sbjct: 162 MGEPLQNYAAVVPALRVMLDDHGYGLSRRRVTVSTSGMVAMIDRLREDCPVALAVSLHAP 221 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 + LR++LVPINRK +E L+DAC Y + ITFEY ML G+ND+P A L+ ++ Sbjct: 222 DDALRDMLVPINRKDGIEALLDACLRYVEAAPRDFITFEYCMLDGVNDAPEQAQQLVHLV 281 Query: 307 KGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 + P K NLIPFNP+P S ++ + F++ ++ +G + IR RG DI AACGQ Sbjct: 282 RRRRVPCKFNLIPFNPFPESGLKRSPRERVTAFAKVLQDAGIVTTIRKVRGDDIDAACGQ 341 Query: 365 LKSLSK 370 L + Sbjct: 342 LAGEVQ 347 >gi|242373506|ref|ZP_04819080.1| Fe-S-cluster redox enzyme [Staphylococcus epidermidis M23864:W1] gi|242348869|gb|EES40471.1| Fe-S-cluster redox enzyme [Staphylococcus epidermidis M23864:W1] Length = 364 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 123/370 (33%), Positives = 207/370 (55%), Gaps = 25/370 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K+S+ + +E+++ L+ G + R QI++W+Y + + M+++S+++R +L Sbjct: 17 EKQSIYSLRYDEMQQWLIDHG----QQKFRAKQIFEWLYQKRVNSIDEMTNLSKDLRQVL 72 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +F++ V ++ S DGT K+L IETV + + ++CV++QVGC Sbjct: 73 KDNFAMTTLTTVVKQESKDGTIKFLFELQD-----GYTIETVLMRHEYGNSVCVTTQVGC 127 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QVL + L + ++S IV+ Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TDERVSQIVI 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+D + L I +D L+ R IT+STSG +P I EE I + A+SL Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVSL 233 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H +++R+ L+PINR Y +E L++A ++Y +N R+TFEY + G+ND A L Sbjct: 234 HGAKDEIRSRLMPINRAYNVEKLMEAIQYYQEKTNR-RVTFEYGLFGGVNDQLEHARELA 292 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++K + +NLIP N P Y+ + ++DI F + +KR G ++ IR +G DI AACG Sbjct: 293 HLIKDLNCHVNLIPVNHVPERNYVKTPREDIFKFEKELKRLGINATIRREQGSDIDAACG 352 Query: 364 QLKSLSKRIP 373 QL++ +++ Sbjct: 353 QLRAKERQVE 362 >gi|89256367|ref|YP_513729.1| radical SAM superfamily protein [Francisella tularensis subsp. holarctica LVS] gi|115314812|ref|YP_763535.1| Fe-S-cluster oxidoreductase [Francisella tularensis subsp. holarctica OSU18] gi|167010712|ref|ZP_02275643.1| probable Fe-S-cluster oxidoreductase [Francisella tularensis subsp. holarctica FSC200] gi|254367703|ref|ZP_04983724.1| radical SAM superfamily protein; probable Fe-S-cluster oxidoreductase [Francisella tularensis subsp. holarctica 257] gi|122325172|sp|Q0BLY6|RLMN_FRATO RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|122999743|sp|Q2A3H3|RLMN_FRATH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|89144198|emb|CAJ79467.1| Radical SAM superfamily protein [Francisella tularensis subsp. holarctica LVS] gi|115129711|gb|ABI82898.1| probable Fe-S-cluster oxidoreductase [Francisella tularensis subsp. holarctica OSU18] gi|134253514|gb|EBA52608.1| radical SAM superfamily protein; probable Fe-S-cluster oxidoreductase [Francisella tularensis subsp. holarctica 257] Length = 370 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 156/382 (40%), Positives = 227/382 (59%), Gaps = 22/382 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K +L+G+ ++ +E+ + IG + Q++KWI+ +G+ DF M+D+ + +RH L Sbjct: 4 DKVNLLGLNQKAIEDFFISIG----KKKFHARQVFKWIHKKGVIDFDAMTDLGKNLRHKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I P++V K S DGT KWL+ G +ETV+IPE+ RGTLCVSSQ+GC Sbjct: 60 KDKAQITIPKVVFSKASKDGTHKWLIDV------GGSAVETVFIPEEGRGTLCVSSQIGC 113 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L CSFC TG Q RNL+A E++ Q+ +A L G D ++NIVM Sbjct: 114 TLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFT----------VTNIVM 163 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NF+NV ++ I D + S+R++TLSTSG VP I + E+ GV LA+SLH Sbjct: 164 MGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLH 223 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 ++ LRN +VPIN+KY ++ L++AC+ Y + ITFEY +++ +ND+ DA L+ Sbjct: 224 TPNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEVNDNLSDAEELVA 283 Query: 305 ILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK PAKINLIPFNP+PG Y I F E ++ +G+ + +R RG DI AAC Sbjct: 284 LLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAAC 343 Query: 363 GQLKSLSKRIPKVPRQEMQITG 384 GQL ++ ++ G Sbjct: 344 GQLAGDVMDKTNRKQRYLKKLG 365 >gi|71274608|ref|ZP_00650896.1| Conserved hypothetical protein 48 [Xylella fastidiosa Dixon] gi|170730870|ref|YP_001776303.1| hypothetical protein Xfasm12_1780 [Xylella fastidiosa M12] gi|205829927|sp|B0U494|RLMN_XYLFM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|71164340|gb|EAO14054.1| Conserved hypothetical protein 48 [Xylella fastidiosa Dixon] gi|167965663|gb|ACA12673.1| conserved hypothetical protein [Xylella fastidiosa M12] Length = 406 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 159/383 (41%), Positives = 220/383 (57%), Gaps = 28/383 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K++L+ + RE LE + R R Q+ KWI+ R + DF+ M+D+ + +R L Sbjct: 26 RKQNLLELDREGLERFFEDV---LGEKRYRAHQVMKWIHHRYVADFEQMTDVGKALRTRL 82 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + P +V +K S DGT KWLL IETVYIP+K RGTLCVSSQ+GC Sbjct: 83 QACAEVRVPRVVFDKHSADGTHKWLLAM---GTDRKNAIETVYIPDKGRGTLCVSSQIGC 139 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 L C+FC T TQ RNLT EI+ QV +A LG+ P R+++N+VM Sbjct: 140 GLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGNVPHQR-----------RRLTNVVM 188 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV +++S+ D +G S +R+TLSTSG VP I R+ E V LA+SLH Sbjct: 189 MGMGEPLMNFDNVVRAMSVMRDDLGYGLSNKRVTLSTSGLVPMIDRLSTESDVSLAVSLH 248 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGL-SNARRITFEYVMLKGINDSPRDALNLI 303 A ++ LR LVP+N+KYP+ L+ +C Y + +TFEY ++KG+ND A L Sbjct: 249 APNDKLREQLVPLNKKYPIVELMASCERYLSVNRKRDSVTFEYTLMKGVNDKQEHAHELA 308 Query: 304 KILKGIPA--------KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 K+++ K+NLIPFNP+PG Y S + DI F + + + + +R RG Sbjct: 309 KLMRQFDCAMQVKGAAKVNLIPFNPFPGTCYERSTEVDIRAFQKILLDAQILAMVRRTRG 368 Query: 356 LDILAACGQLKSLSKRIPKVPRQ 378 DI AACGQLK + + RQ Sbjct: 369 DDIDAACGQLKGQV--VDRTRRQ 389 >gi|71898147|ref|ZP_00680333.1| Conserved hypothetical protein 48 [Xylella fastidiosa Ann-1] gi|71732121|gb|EAO34177.1| Conserved hypothetical protein 48 [Xylella fastidiosa Ann-1] Length = 401 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 161/383 (42%), Positives = 224/383 (58%), Gaps = 28/383 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K++L+ + RE LE + R R Q+ KWI+ R + DF+ M+D+ + +R L Sbjct: 21 RKQNLLELDREGLERFFEDV---LGEKRYRAHQVMKWIHHRYVADFEQMTDVGKALRTRL 77 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + P +V +K S DGT KWLL A IETVYIP+K RGTLCVSSQ+GC Sbjct: 78 QACAEVRVPRVVFDKHSVDGTHKWLLAMGA---DRKNAIETVYIPDKGRGTLCVSSQIGC 134 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 L C+FC T TQ RNLT EI+ QV +A LG+ +P R+++N+VM Sbjct: 135 GLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVVM 183 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV +++S+ D +G S +R+TLSTSG VP I R+ E V LA+SLH Sbjct: 184 MGMGEPLMNFDNVVRAMSVMRDDLGYGLSNKRVTLSTSGLVPMIDRLSTESDVSLAVSLH 243 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-RITFEYVMLKGINDSPRDALNLI 303 A ++ LR LVP+N+KYP+ L+ +C Y ++ R +TFEY ++KG+ND A L Sbjct: 244 APNDKLREQLVPLNKKYPIVELMASCERYLSVNPKRDSVTFEYTLMKGVNDKQEHAHELA 303 Query: 304 KILKGIPA--------KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 K+++ K+NLIPFNP+PG Y S + DI F + + + + +R RG Sbjct: 304 KLMRQFDCAMQVKGAAKVNLIPFNPFPGTCYERSTEVDIRAFQKILLDAQILAMVRRTRG 363 Query: 356 LDILAACGQLKSLSKRIPKVPRQ 378 DI AACGQLK + + RQ Sbjct: 364 DDIDAACGQLKGQV--VDRTRRQ 384 >gi|182682234|ref|YP_001830394.1| radical SAM protein [Xylella fastidiosa M23] gi|182632344|gb|ACB93120.1| radical SAM enzyme, Cfr family [Xylella fastidiosa M23] Length = 401 Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 159/383 (41%), Positives = 221/383 (57%), Gaps = 28/383 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K++L+ + RE LE + R R Q+ KWI+ R + DF+ M+D+ + +R L Sbjct: 21 RKQNLLELDREGLERFFEDV---LGEKRYRAHQVMKWIHHRYVADFEQMTDVGKALRTRL 77 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + P +V +K S DGT KWLL IETVYIP+K RGTLCVSSQ+GC Sbjct: 78 QACAEVRVPRVVFDKHSADGTHKWLLAM---GTDRKNAIETVYIPDKGRGTLCVSSQIGC 134 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 L C+FC T TQ RNLT EI+ QV +A LG+ +P R+++N+VM Sbjct: 135 GLNCTFCSTATQGFNRNLTTAEIIGQVWVAARHLGN-----------VPHQQRRLTNVVM 183 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NFDNV +++S+ D +G S +R+TLSTSG VP I R+ E V LA+SLH Sbjct: 184 MGMGEPLMNFDNVVRAMSVMRDDLGYGLSNKRVTLSTSGLVPMIDRLSTESDVSLAVSLH 243 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGL-SNARRITFEYVMLKGINDSPRDALNLI 303 A ++ LR LVP+N+KYP+ L+ +C Y + +TFEY ++KG+ND A L Sbjct: 244 APNDKLREQLVPLNKKYPIVELMASCERYLSVNRKRDSVTFEYTLMKGVNDKQEHAHELA 303 Query: 304 KILKGIPA--------KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 K+++ K+NLIPFNP+PG Y S + DI F + + + + +R RG Sbjct: 304 KLMRQFDCAMQVKGAAKVNLIPFNPFPGTCYERSTEVDIRAFQKILLDAQILAMVRRTRG 363 Query: 356 LDILAACGQLKSLSKRIPKVPRQ 378 DI AACGQLK + + RQ Sbjct: 364 DDIDAACGQLKGQV--VDRTRRQ 384 >gi|56708143|ref|YP_170039.1| radical SAM superfamily protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110670614|ref|YP_667171.1| radical SAM superfamily protein [Francisella tularensis subsp. tularensis FSC198] gi|224457239|ref|ZP_03665712.1| radical SAM superfamily protein [Francisella tularensis subsp. tularensis MA00-2987] gi|254370628|ref|ZP_04986633.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254874946|ref|ZP_05247656.1| radical SAM superfamily protein [Francisella tularensis subsp. tularensis MA00-2987] gi|81597446|sp|Q5NG03|RLMN_FRATT RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123063459|sp|Q14HF5|RLMN_FRAT1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|54112615|gb|AAV28941.1| NT02FT0031 [synthetic construct] gi|56604635|emb|CAG45691.1| Radical SAM superfamily protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110320947|emb|CAL09074.1| Radical SAM superfamily protein [Francisella tularensis subsp. tularensis FSC198] gi|151568871|gb|EDN34525.1| hypothetical protein FTBG_00416 [Francisella tularensis subsp. tularensis FSC033] gi|254840945|gb|EET19381.1| radical SAM superfamily protein [Francisella tularensis subsp. tularensis MA00-2987] gi|282159349|gb|ADA78740.1| Radical SAM superfamily protein [Francisella tularensis subsp. tularensis NE061598] Length = 370 Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 156/382 (40%), Positives = 227/382 (59%), Gaps = 22/382 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K +L+G+ ++ +E+ + IG + Q++KWI+ +G+ DF M+D+ + +RH L Sbjct: 4 DKVNLLGLNQKAIEDFFISIG----EKKFHARQVFKWIHKKGVIDFDAMTDLGKNLRHKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I P++V K S DGT KWL+ G +ETV+I + RGTLCVSSQVGC Sbjct: 60 KEKAQITIPKVVFSKASKDGTHKWLIDV------GGSAVETVFILAEGRGTLCVSSQVGC 113 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L CSFC TG Q RNL+A E++ Q+ +A L G D ++NIVM Sbjct: 114 TLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFT----------VTNIVM 163 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL NF+NV ++ I D + S+R++TLSTSG VP I + E+ GV LA+SLH Sbjct: 164 MGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLH 223 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++ LRN +VPIN+KY ++ L++AC+ Y + ITFEY +++ +ND+ DA L+ Sbjct: 224 APNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLIEEVNDNLSDAEELVA 283 Query: 305 ILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK PAKINLIPFNP+PG Y I F E ++ +G+ + +R RG DI AAC Sbjct: 284 LLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAAC 343 Query: 363 GQLKSLSKRIPKVPRQEMQITG 384 GQL ++ ++ G Sbjct: 344 GQLAGDVMDKTNRKQRYLKKLG 365 >gi|293557268|ref|ZP_06675815.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1039] gi|291600555|gb|EFF30860.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1039] Length = 355 Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 132/376 (35%), Positives = 221/376 (58%), Gaps = 28/376 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K+S+ G+ EEL ++ G + R +Q+W+W+Y + + +F M+++S+++ Sbjct: 1 MEKQSIYGLTNEELINWFIENG----EKKFRAAQVWEWLYQKRVSNFTEMTNLSKQLIEK 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L++HF I + + + + DGT K+L P + + IETV + ++ ++CV++QVG Sbjct: 57 LSEHFIINPLKQMVVQEASDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+LTA EI+ Q+++ + + ++G ++S++V Sbjct: 112 CNIGCTFCASGLLKKNRDLTAGEIVAQIMMVQHYFDE------------RNLGERVSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+DNV L I +D+ GL+ R IT+STSG I + V LAIS Sbjct: 160 VMGIGEPFDNYDNVMDFLHIINDAKGLAIGARHITVSTSGLAHKIKEFANNGLQVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N++R ++ INR +P+E L++A Y +N RITFEY+ML +ND P A L Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMEAVDEYLEKTNR-RITFEYIMLNQVNDRPEHAQQL 278 Query: 303 IKILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 +LK A +NLIP+NP + Y + D++ F + +K++G + IR G DI Sbjct: 279 ADLLKDKKKLAYVNLIPYNPVSEHDQYSRCPKADVLRFYDVLKKNGVNCVIRKEHGTDID 338 Query: 360 AACGQLKSLSKRIPKV 375 AACGQL+ SK++ K Sbjct: 339 AACGQLR--SKQMKKT 352 >gi|54307955|ref|YP_128975.1| hypothetical protein PBPRA0760 [Photobacterium profundum SS9] gi|81615490|sp|Q6LU52|RLMN_PHOPR RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|46912381|emb|CAG19173.1| Conserved hypothetical protein [Photobacterium profundum SS9] Length = 373 Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 145/383 (37%), Positives = 207/383 (54%), Gaps = 24/383 (6%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M + K +L+ + R+ L + R QI KWIY G DF M++I++++ Sbjct: 1 MTTV-KTNLLDLDRKGLRTYFAE---ELNEKAFRADQIMKWIYQFGCDDFDQMTNINKKL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L + I P + + S DGT KW +R ++ETVYIP+ R TLCVSS Sbjct: 57 REKLKRVAEIRAPYVSQAQHSVDGTIKWAMRVGD------QDVETVYIPDGDRATLCVSS 110 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC+L C+FC T Q RNL EI+ QV A +G + + R I+ Sbjct: 111 QVGCALACTFCSTAQQGFNRNLRVSEIIGQVWRAAKEIG----------IEKDTGRRPIT 160 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ I V LA Sbjct: 161 NVVMMGMGEPLLNMKNLIPALEIMLDDIGFGLSKRRVTVSTSGVVSGLDQMTGNIDVALA 220 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRD 298 ISLHA +++LR+ ++PIN ++ + +++ Y SN R+T EY++L +ND Sbjct: 221 ISLHAPTDELRSQIMPINDRFNIATFLESVSRYIEQSNANRGRVTVEYILLDHVNDDMEH 280 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L +LK PAKINLIPFNP+PG Y I F + + ++ +R RG DI Sbjct: 281 ARQLAVLLKDTPAKINLIPFNPYPGSPYRKPSNSRIDRFMKTLMEYDFTVTVRKTRGDDI 340 Query: 359 LAACGQLKSLSKRIPKVPRQEMQ 381 AACGQL I + R +++ Sbjct: 341 DAACGQLVGDV--IDRTKRTQVK 361 >gi|332534669|ref|ZP_08410500.1| ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas haloplanktis ANT/505] gi|332035881|gb|EGI72363.1| ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas haloplanktis ANT/505] Length = 376 Score = 434 bits (1116), Expect = e-119, Method: Composition-based stats. Identities = 162/383 (42%), Positives = 226/383 (59%), Gaps = 21/383 (5%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M KK +L+ + R+ + E G R+ Q+ KWIY G+ +F M+++++++ Sbjct: 1 MTEQKKINLLDLNRDAMRELFASFG----EKPFRSDQVMKWIYHFGVDNFDEMTNVNKKL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 + L I+ PEI + + DGT K+ L G E+E V+IPEK R TLCVSS Sbjct: 57 KEKLKAECEIVAPEITVRQQASDGTIKYALILE-----GGQEVEAVWIPEKERATLCVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC+L C+FC T Q RNL EI+ QV +G + S R ++ Sbjct: 112 QVGCALECTFCSTAQQGFNRNLKVSEIIGQVWRVAKDIG----------LDGHSEKRPVT 161 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N NV ++ + D G SKRR+TLSTSG VP + + E+I V LA Sbjct: 162 NVVMMGMGEPLLNLKNVVPAMELMMDDWGFGLSKRRVTLSTSGVVPALDLLKEKIDVALA 221 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDA 299 ISLHA N LR+ILVP+N+KYP+E + ACR Y S A + +T EYVML GINDS A Sbjct: 222 ISLHAPDNALRDILVPVNKKYPIEEFLAACRRYIDGSKANKDVTVEYVMLNGINDSTDQA 281 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L++ LKG P+K+NLIPFNP+PG EY S I FS+ ++ +G + +R RG DI Sbjct: 282 HALVQTLKGTPSKVNLIPFNPFPGNEYTRSSNSRIDRFSKVLQAAGVTCIVRRTRGDDID 341 Query: 360 AACGQL-KSLSKRIPKVPRQEMQ 381 AACGQL + R ++ +++++ Sbjct: 342 AACGQLVGDVVDRTKRLAKKKIR 364 >gi|209694315|ref|YP_002262243.1| hypothetical protein VSAL_I0726 [Aliivibrio salmonicida LFI1238] gi|254807148|sp|B6EGY4|RLMN_ALISL RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|208008266|emb|CAQ78411.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238] Length = 383 Score = 434 bits (1116), Expect = e-119, Method: Composition-based stats. Identities = 147/384 (38%), Positives = 207/384 (53%), Gaps = 23/384 (5%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 K +L+ R+ L + R QI KW+Y G DF M++I++++R Sbjct: 2 TTTKTNLLDFDRKGLRAFFSE---ELGEKAFRADQIMKWMYHFGCDDFDQMNNINKKLRE 58 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L Q I P + + + S DGT KW ++ ++ETVYIP+ R TLCVSSQV Sbjct: 59 KLKQKCEIRAPYVSEAQHSVDGTIKWAMKVGD------QDVETVYIPDGDRATLCVSSQV 112 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L C+FC T Q RNL EI+ Q+ A +G + + R I+N+ Sbjct: 113 GCALACTFCSTAQQGFNRNLKVSEIVGQIWRAAREIG----------LEKETGRRPITNV 162 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL N N+ SL I D +G SKRR+T+STSG V + ++ ++ V LAIS Sbjct: 163 VMMGMGEPLLNMKNLMPSLDIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGKVDVALAIS 222 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDAL 300 LHA ++ LR+ ++PIN ++ +E + R Y SN R+T EYV+L IND A Sbjct: 223 LHAPTDKLRSEIMPINDRWNIEAFLACVREYIASSNANRGRVTVEYVLLDHINDDMDHAR 282 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L ++LK PAKINLIPFNP+PG Y I F + + ++ +R RG DI A Sbjct: 283 QLAELLKDTPAKINLIPFNPYPGSPYKKPSNSRIDRFMKTLMEYDFTVTVRRTRGDDIDA 342 Query: 361 ACGQLKSLSKRIPKVPRQEMQITG 384 ACGQL I + R +++ G Sbjct: 343 ACGQLVGDV--IDRTKRTQVKQQG 364 >gi|310642737|ref|YP_003947495.1| ribosomal RNA large subunit methyltransferase n [Paenibacillus polymyxa SC2] gi|309247687|gb|ADO57254.1| Ribosomal RNA large subunit methyltransferase N [Paenibacillus polymyxa SC2] Length = 355 Score = 434 bits (1116), Expect = e-119, Method: Composition-based stats. Identities = 125/365 (34%), Positives = 196/365 (53%), Gaps = 25/365 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K + + EEL++ G P R QI+ W+YV+ I +F M+++S+ +R L Sbjct: 11 KPFIYDLTLEELQDWAKNNGEPA----FRGGQIFDWLYVKRINNFSEMTNLSKALREKLE 66 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + FS + + + S DGT K+L IETV + ++CV++QVGC Sbjct: 67 EQFSFVTLHEITKLESKDGTVKFLFGLHDD-----HAIETVIMRHNYGNSICVTTQVGCR 121 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC + L RNLTA EI QV+ A+ + + ++S+IV+M Sbjct: 122 IGCTFCASTLGGLKRNLTAGEITAQVVQAQKI--------------LDKTNERVSSIVIM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G GEP N++ L GL+ +R IT+STSG VPNI + +E + LAIS+H Sbjct: 168 GSGEPFENYEATMTFLRTMIHEKGLNIGQRHITVSTSGIVPNIYKFADEDTQINLAISIH 227 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++ LR+ L+P+NR+YP + ++D+ R+Y + RI+FEY ++ G+ND A L Sbjct: 228 APNDALRSKLMPVNRRYPFKDVMDSLRYYLAKTGR-RISFEYALIGGVNDQAEHAEELAD 286 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK + +NLIP N P +Y+ + + DI F + G + IR +G DI AACGQ Sbjct: 287 VLKDMLCHVNLIPVNHVPERKYVRTSRSDIFNFQRILAEKGVNVTIRREQGHDIAAACGQ 346 Query: 365 LKSLS 369 L++ Sbjct: 347 LRAKH 351 >gi|317129257|ref|YP_004095539.1| radical SAM enzyme, Cfr family [Bacillus cellulosilyticus DSM 2522] gi|315474205|gb|ADU30808.1| radical SAM enzyme, Cfr family [Bacillus cellulosilyticus DSM 2522] Length = 362 Score = 434 bits (1116), Expect = e-119, Method: Composition-based stats. Identities = 131/367 (35%), Positives = 200/367 (54%), Gaps = 25/367 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K S+ + EEL + + IG + R QI+ W+YV+ + F+ M+++S+++RH L Sbjct: 14 EKPSIYSLTYEELIQWIEGIG----ESKFRAKQIFDWLYVKRVTSFEEMTNLSKDLRHNL 69 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +SI + + S DGT K+L IETV + + ++CV++QVGC Sbjct: 70 ANEYSITTLSTITNQTSKDGTIKFLFELQD-----GYSIETVVMRHEYGNSVCVTTQVGC 124 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 L C+FC + L RNL A EI+ QVL A+ L D ++ ++V+ Sbjct: 125 RLGCTFCASTLGGLKRNLEAGEIVAQVLKAQQFLDD--------------TDERVDSVVV 170 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+D + + L + GL+ R IT+STSG VP I + +E + + AISL Sbjct: 171 MGIGEPFDNYDELIRFLKTINHDNGLNIGARHITVSTSGVVPKIYQFADENMQINFAISL 230 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA + R L+PINR YP++ L+DA R+Y +N RITFEY + G+NDS DA L Sbjct: 231 HAAKTETRTRLMPINRAYPIDKLMDAIRYYIKKTNR-RITFEYGLFGGVNDSIEDAELLA 289 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++K I +NLIP N Y+ + ++ I F +K + IR +G DI AACG Sbjct: 290 DLIKDIKCHVNLIPVNDVLERNYVRTPKEQIFAFERALKNRDINVTIRREQGHDIDAACG 349 Query: 364 QLKSLSK 370 QL++ + Sbjct: 350 QLRAKER 356 >gi|91225141|ref|ZP_01260363.1| hypothetical protein V12G01_12975 [Vibrio alginolyticus 12G01] gi|91190084|gb|EAS76355.1| hypothetical protein V12G01_12975 [Vibrio alginolyticus 12G01] Length = 375 Score = 434 bits (1116), Expect = e-119, Method: Composition-based stats. Identities = 143/380 (37%), Positives = 208/380 (54%), Gaps = 23/380 (6%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 +K +L+ R+ + + + R Q+ KWIY G+ DF+ M++I++++R Sbjct: 2 TTEKINLLDFDRKGMRQFFAE---ELGEKAFRADQVMKWIYHFGVDDFEKMTNINKKLRE 58 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L I P + + + S DGT KW ++ ++ETVYIPE R TLCVSSQV Sbjct: 59 KLLHKCEIKAPTVAEAQHSSDGTIKWAMKVGD------QDVETVYIPEDDRATLCVSSQV 112 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L C FC T Q RNL EI+ QV A +G + + R I+N+ Sbjct: 113 GCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREIG----------LEKETGRRPITNV 162 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL N N+ +L + D +G SKRR+T+STSG V + ++ +I V LAIS Sbjct: 163 VMMGMGEPLLNMKNLIPALELMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAIS 222 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300 LHA ++ LR+ ++PIN ++ ++ + + R Y SNA R +T EYV+L +ND A Sbjct: 223 LHAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDEMDHAR 282 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L +++K P KINLIPFNP+PG Y I F + + + ++ +R RG DI A Sbjct: 283 ELAELMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDA 342 Query: 361 ACGQLKSLSKRIPKVPRQEM 380 ACGQL I + R M Sbjct: 343 ACGQLVGDV--IDRTKRTAM 360 >gi|256853566|ref|ZP_05558931.1| ribosomal RNA large subunit methyltransferase N [Enterococcus faecalis T8] gi|256710509|gb|EEU25552.1| ribosomal RNA large subunit methyltransferase N [Enterococcus faecalis T8] Length = 357 Score = 433 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 133/379 (35%), Positives = 219/379 (57%), Gaps = 26/379 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++KES+ G+ RE+L + L G + R +Q+W+W+Y + + F MS+IS+ + L Sbjct: 1 MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNISKSLMTL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L ++FS+ + V + + DGT K+L P + + IETV + ++ ++CV++QVG Sbjct: 57 LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+LTA EI+ +++ + + + ++S++V Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAKIMWVQHYFDE------------RGLDERVSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+ NV L +D GL+ R IT+STSG VP I + + V LAIS Sbjct: 160 VMGIGEPFDNYVNVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N++R +++ INR +P+E L+ A Y +N R+TFEY+ML +ND P A L Sbjct: 220 LHAPNNEVRTLIMRINRSFPIEKLMAAIDEYIEKTNR-RVTFEYIMLSQVNDRPEHAQQL 278 Query: 303 IKILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 +L+ + +NLIP+NP + Y S ++ ++ F + +K++G + IR G DI Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338 Query: 360 AACGQLKSLSKRIPKVPRQ 378 AACGQL+S + KV Q Sbjct: 339 AACGQLRSKQMKKEKVKNQ 357 >gi|251797737|ref|YP_003012468.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus sp. JDR-2] gi|247545363|gb|ACT02382.1| radical SAM enzyme, Cfr family [Paenibacillus sp. JDR-2] Length = 348 Score = 433 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 122/365 (33%), Positives = 203/365 (55%), Gaps = 25/365 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K + ++L++ + + G P R Q++ W+YV+ ++ F+ MS++ + +R L Sbjct: 2 KPIIYDYNLDQLQDWMKENGEPA----FRGGQLFDWLYVKRVKSFEEMSNLPKPLREKLE 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + F + + + S DGT K+L IETV + + ++CV++QVGC Sbjct: 58 ESFQFVTLSEITKFESKDGTVKFLFGLHDN-----HAIETVIMRHEYGNSICVTTQVGCR 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC + L RNLTA EI+ QV+ A+ + + + G ++S+IV+M Sbjct: 113 IGCTFCASTLGGLKRNLTAGEIVAQVVTAQQM--------------LDATGERVSSIVIM 158 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G GEP N+D L I GL+ +R IT+STSG VP++ + EE + LAIS+H Sbjct: 159 GSGEPFENYDATMTFLRIMIHEKGLNIGQRHITVSTSGIVPSMYKFTEENTQINLAISIH 218 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++ LR+ L+P+NR++P E ++ ACR++ + RITFEY ++ G+ND A L Sbjct: 219 APNDKLRSKLMPVNRRFPFEDVMAACRNHIAKTGR-RITFEYALIGGVNDQAEHAQELAD 277 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L+G+ +NLIP N P Y+ + + DI F ++++ + IR +G DI AACGQ Sbjct: 278 VLQGMLCHVNLIPVNHVPERNYVRTPRNDIFEFQRILEKNKINCTIRREQGHDIAAACGQ 337 Query: 365 LKSLS 369 L++ Sbjct: 338 LRAKH 342 >gi|319401489|gb|EFV89699.1| radical SAM superfamily protein [Staphylococcus epidermidis FRI909] Length = 364 Score = 433 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 125/370 (33%), Positives = 206/370 (55%), Gaps = 25/370 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K+S+ + +E+++ L+ G + R QI++W+Y + + M+++S+E+R L Sbjct: 17 EKQSIYSLRYDEMQQWLIDHG----QQKFRAKQIFEWLYQKRVNTIDEMTNLSKELRQTL 72 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 HF++ V ++ S DGT K+L IETV + + ++CV++QVGC Sbjct: 73 KDHFAMTTLTTVVKQESKDGTIKFLFELQD-----GYTIETVLMRHEYGNSVCVTTQVGC 127 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QVL + L + ++S IV+ Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TNERVSQIVI 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+D + L I +D L+ R IT+STSG +P I EE I + A+SL Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVSL 233 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H +++R+ L+PINR Y ++ L++A R+Y +N R+TFEY + G+ND A +L Sbjct: 234 HGAKDEIRSRLMPINRAYNVDKLMEAIRYYQEKTNR-RVTFEYGLFGGVNDQLEHARDLA 292 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++K + +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AACG Sbjct: 293 HLIKDLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAACG 352 Query: 364 QLKSLSKRIP 373 QL++ +++ Sbjct: 353 QLRAKERQVE 362 >gi|16078638|ref|NP_389457.1| ribosomal RNA large subunit methyltransferase N [Bacillus subtilis subsp. subtilis str. 168] gi|221309450|ref|ZP_03591297.1| hypothetical protein Bsubs1_08696 [Bacillus subtilis subsp. subtilis str. 168] gi|221313775|ref|ZP_03595580.1| hypothetical protein BsubsN3_08632 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318699|ref|ZP_03599993.1| hypothetical protein BsubsJ_08566 [Bacillus subtilis subsp. subtilis str. JH642] gi|221322970|ref|ZP_03604264.1| hypothetical protein BsubsS_08672 [Bacillus subtilis subsp. subtilis str. SMY] gi|3287951|sp|O34617|RLMN_BACSU RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|2337804|emb|CAA74265.1| YloN protein [Bacillus subtilis subsp. subtilis str. 168] gi|2633947|emb|CAB13448.1| putative Fe-S-cluster AdoMet radical enzyme [Bacillus subtilis subsp. subtilis str. 168] Length = 363 Score = 433 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 118/368 (32%), Positives = 201/368 (54%), Gaps = 25/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 ++ S+ +E+++ L G R +QI++W+Y + + F+ M+++S+++R L Sbjct: 16 ERPSIYSFELDEIKQWLTDNG----EKPFRAAQIFEWLYEKRVSSFEDMTNLSKDLREKL 71 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 N F + + ++ S DGT K+L IETV + + ++CV++QVGC Sbjct: 72 NTRFVLTTLKTAVKQTSQDGTMKFLFELHD-----GYTIETVLMRHEYGNSVCVTTQVGC 126 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 127 RIGCTFCASTLGGLKRNLEAGEIVAQVVKVQKALDE--------------TDERVSSVVI 172 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP NF+ + L I + GL+ R IT+STSG +P I ++ + + AISL Sbjct: 173 MGIGEPFDNFNEMLAFLKIINHDKGLNIGARHITVSTSGIIPKIYEFADQQMQINFAISL 232 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA + ++R+ L+PINR Y L L++A ++Y + RI+FEY + G+ND A L Sbjct: 233 HAPNTEIRSRLMPINRAYKLPDLMEAVKYYINKTGR-RISFEYGLFGGVNDQVEHAEELA 291 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +L+G+ +NLIP N P +Y+ + + I F + +K G + IR +G DI AACG Sbjct: 292 DLLEGVKCHVNLIPVNYVPERDYVRTPRDQIFAFEKTLKSRGVNVTIRREQGHDIDAACG 351 Query: 364 QLKSLSKR 371 QL++ ++ Sbjct: 352 QLRAKERQ 359 >gi|269965168|ref|ZP_06179302.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269830154|gb|EEZ84381.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 375 Score = 433 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 143/380 (37%), Positives = 208/380 (54%), Gaps = 23/380 (6%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 +K +L+ R+ + + + R Q+ KWIY G+ DF+ M++I++++R Sbjct: 2 TTEKINLLDFDRKGMRQFFAE---ELGEKAFRADQVMKWIYHFGVDDFEKMTNINKKLRE 58 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L I P + + + S DGT KW ++ ++ETVYIPE R TLCVSSQV Sbjct: 59 KLLYKCEIKAPTVAEAQHSSDGTIKWAMKVGD------QDVETVYIPEDDRATLCVSSQV 112 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L C FC T Q RNL EI+ QV A +G + + R I+N+ Sbjct: 113 GCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREIG----------LEKETGRRPITNV 162 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL N N+ +L + D +G SKRR+T+STSG V + ++ +I V LAIS Sbjct: 163 VMMGMGEPLLNMKNLIPALELMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAIS 222 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300 LHA ++ LR+ ++PIN ++ ++ + + R Y SNA R +T EYV+L +ND A Sbjct: 223 LHAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHAR 282 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L +++K P KINLIPFNP+PG Y I F + + + ++ +R RG DI A Sbjct: 283 ELAELMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDA 342 Query: 361 ACGQLKSLSKRIPKVPRQEM 380 ACGQL I + R M Sbjct: 343 ACGQLVGDV--IDRTKRTAM 360 >gi|312973242|ref|ZP_07787414.1| UPF0063 protein yfgB [Escherichia coli 1827-70] gi|310331837|gb|EFP99072.1| UPF0063 protein yfgB [Escherichia coli 1827-70] Length = 339 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 152/349 (43%), Positives = 202/349 (57%), Gaps = 19/349 (5%) Query: 39 WKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIG 98 KW+Y +F M+DI++ +R L + I PE+V+E+ S DGT KW + Sbjct: 1 MKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGD---- 56 Query: 99 GPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLL 158 +ETVYIPE R TLCVSSQVGC+L C FC T Q RNL EI+ QV A ++ Sbjct: 57 --QRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIV 114 Query: 159 GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRIT 218 G + R I+N+VMMGMGEPL N +NV ++ I D G SKRR+T Sbjct: 115 G----------AAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVT 164 Query: 219 LSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN 278 LSTSG VP + ++G+ I V LAISLHA ++++R+ +VPIN+KY +E + A R Y SN Sbjct: 165 LSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSN 224 Query: 279 AR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVT 336 A R+T EYVML +ND A L ++LK P KINLIP+NP+PG Y S I Sbjct: 225 ANQGRVTIEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDR 284 Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKSLS-KRIPKVPRQEMQITG 384 FS+ + G+++ +R RG DI AACGQL R + R+ MQ Sbjct: 285 FSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKRMQGEA 333 >gi|241890016|ref|ZP_04777314.1| radical SAM enzyme, Cfr family [Gemella haemolysans ATCC 10379] gi|241863638|gb|EER68022.1| radical SAM enzyme, Cfr family [Gemella haemolysans ATCC 10379] Length = 377 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 124/372 (33%), Positives = 205/372 (55%), Gaps = 25/372 (6%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 + K S+ + ++LEE ++ IG + R QI+ W+Y + I DF M ++ + + Sbjct: 15 LKDFDKMSIYSIRLDQLEEYIVSIG----EKKFRAKQIFDWLYKKRITDFSEMKNVPKSL 70 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 + L + F I + + ++ S DGT K+L + IE+V + K +LCV++ Sbjct: 71 QEKLAEEFEITTLKTIIKQESADGTMKFLFELQDKYT-----IESVLMKNKYGNSLCVTT 125 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC + C+FC + L RNL A EI+ QVL + + G +IS Sbjct: 126 QVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLKVQQE--------------LDKKGERIS 171 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239 +IV+MG+GEP N+D + + I + + R IT+STSG VP I E++ + Sbjct: 172 SIVIMGIGEPFENYDEMMDFIRIVNSDESFNIGARHITVSTSGIVPKIYDFANEKVQINF 231 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA +N+LR+ ++P+NR Y ++ L++A ++Y +N RITFEY ++ +ND A Sbjct: 232 AVSLHAPTNELRSKIMPVNRAYNIDKLMEALKYYQETTNR-RITFEYGLMGKVNDQKEHA 290 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L +I+KG+ +NLIP N P Y+ + + DI F + +K++ + IR +G DI Sbjct: 291 EKLSEIIKGLNCHVNLIPINYVPERNYVRTSKSDIFAFEKVLKKNKVNVTIRRTQGDDID 350 Query: 360 AACGQLKSLSKR 371 AACGQL++ ++ Sbjct: 351 AACGQLRAKERK 362 >gi|312884301|ref|ZP_07744010.1| ribosomal RNA large subunit methyltransferase N [Vibrio caribbenthicus ATCC BAA-2122] gi|309368074|gb|EFP95617.1| ribosomal RNA large subunit methyltransferase N [Vibrio caribbenthicus ATCC BAA-2122] Length = 375 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 139/365 (38%), Positives = 202/365 (55%), Gaps = 21/365 (5%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 +K +L+ R+ L + R Q+ KWIY G+ +F M++I++++R Sbjct: 2 TTEKVNLLDFDRQGLRKFFAD---ELGEKAFRADQVMKWIYHFGVDNFDNMTNINKKLRE 58 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L Q ++ P + + + S DGT KW ++ ++ETVYIPE R TLC+SSQV Sbjct: 59 KLQQRCTVTAPTVAEAQHSSDGTIKWAMKVGD------QDVETVYIPEDDRATLCISSQV 112 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L C FC T Q RNL EI+ Q+ A +G + + R I+N+ Sbjct: 113 GCALECKFCSTAQQGFNRNLKVSEIIGQLWRAAREIG----------LEKETGRRPITNV 162 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL N N+ +L + D + SKRR+T+STSG V + ++ +I V LAIS Sbjct: 163 VMMGMGEPLLNMKNLIPALELMLDDLAFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAIS 222 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300 LHA ++ LR+ ++PIN ++ ++ + + R Y SNA R +T EYV+L +ND A Sbjct: 223 LHAPNDALRSEIMPINDRWNIDDFLASVRRYIQSSNANRGKVTIEYVLLDHVNDDMDHAR 282 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L LK P KINLIPFNP+PG Y I F + + + G++ +R RG DI A Sbjct: 283 ELSHTLKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQLGHTVTVRKTRGDDIDA 342 Query: 361 ACGQL 365 ACGQL Sbjct: 343 ACGQL 347 >gi|261252176|ref|ZP_05944749.1| ribosomal RNA large subunit methyltransferase N [Vibrio orientalis CIP 102891] gi|260935567|gb|EEX91556.1| ribosomal RNA large subunit methyltransferase N [Vibrio orientalis CIP 102891] Length = 374 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 140/365 (38%), Positives = 203/365 (55%), Gaps = 21/365 (5%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 +K +L+ R+ + + + R Q+ KWIY G+ +F M++I++++R Sbjct: 2 TTEKINLLDFDRQGMRKFFAE---ELGEKAFRADQVMKWIYHFGVDNFDNMTNINKKLRE 58 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L I P + + + S DGT KW ++ ++ETVYIPE R TLCVSSQV Sbjct: 59 KLLHRCEIKAPVVAEAQHSSDGTIKWAMKVGD------QDVETVYIPEDDRATLCVSSQV 112 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L C FC T Q RNL EI+ QV A +G + + R I+N+ Sbjct: 113 GCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREIG----------LQKETGRRPITNV 162 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL N N+ +L I D +G SKRR+T+STSG V + ++ +I V LAIS Sbjct: 163 VMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAIS 222 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300 LHA +++LR+ ++PIN ++ ++ + + R Y SNA R +T EYV+L +ND A Sbjct: 223 LHAPNDELRSQIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHAR 282 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L ++K P KINLIPFNP+PG Y I F + + + ++ +R RG DI A Sbjct: 283 ELAVLMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDA 342 Query: 361 ACGQL 365 ACGQL Sbjct: 343 ACGQL 347 >gi|229542943|ref|ZP_04432003.1| radical SAM enzyme, Cfr family [Bacillus coagulans 36D1] gi|229327363|gb|EEN93038.1| radical SAM enzyme, Cfr family [Bacillus coagulans 36D1] Length = 355 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 137/377 (36%), Positives = 223/377 (59%), Gaps = 27/377 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K+S+ G+ ++L +L+ G + R Q+W+W+Y + ++ F M++++++ L Sbjct: 1 MEKKSIFGLTIDQLTGWMLEHG----QKKFRAQQVWEWLYQKRVKSFAEMTNVNKDCLAL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +HF I + V ++ S DGT K+L + + IETV + + ++CV++QVG Sbjct: 57 LEEHFHIHTLKQVVKQESKDGTVKFLFQLKDGNL-----IETVLMRQHYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ CSFC +G + R+L + EI+ Q++ + + G ++S++V Sbjct: 112 CNIGCSFCASGLLRKNRDLESGEIVEQIMYVQKHFDE------------AGKGERVSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242 +MG+GEP NF+NV L I + GL+ R IT+STSG P I + ++ V LAIS Sbjct: 160 VMGIGEPFDNFENVVNFLKIINAPKGLAIGARHITVSTSGLAPKIYAFADLDLQVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ INR YPLE L+ A +Y +N RITFEY++LK +ND +AL L Sbjct: 220 LHAPNNELRSRIMKINRAYPLEKLMPAIDYYLEKTNR-RITFEYILLKDVNDHKEEALQL 278 Query: 303 IKIL--KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 K+L K A +NLIP+NP Y S+++ I+TF + +K++G + +R G DI A Sbjct: 279 AKLLQDKRHLAYVNLIPYNPVNEHGYQRSEKESIMTFYDTLKKNGINCVVRQEHGTDIDA 338 Query: 361 ACGQLKSLSKRIPKVPR 377 ACGQL+ SK+I K R Sbjct: 339 ACGQLR--SKQIKKANR 353 >gi|261405801|ref|YP_003242042.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus sp. Y412MC10] gi|329926635|ref|ZP_08281048.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF5] gi|261282264|gb|ACX64235.1| radical SAM enzyme, Cfr family [Paenibacillus sp. Y412MC10] gi|328939176|gb|EGG35539.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF5] Length = 346 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 128/369 (34%), Positives = 201/369 (54%), Gaps = 25/369 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K + EEL+ + G P R +QI+ W+YV+ + DF M+++S+E+R L Sbjct: 2 KPFIYDYSLEELQAWAQENGEPA----FRGTQIYDWLYVKRVNDFAEMTNLSKELRAKLE 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 Q FS + + + S DGT K+L IETV + ++CV++QVGC Sbjct: 58 QEFSFVTLTEITKLESKDGTVKFLFGLHDD-----HAIETVIMRHNYGNSICVTTQVGCR 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC + L RNLT+ EI+ QV+ A+ + + G ++S+IV+M Sbjct: 113 IGCTFCASTLGGLKRNLTSGEIVAQVVQAQKI--------------LDKTGERVSSIVIM 158 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G GEP N++ K L GL+ +R IT+STSG VPNI + EE + LAIS+H Sbjct: 159 GSGEPFENYEATMKFLRTMIHEKGLNIGQRHITVSTSGIVPNIYKFTEEDTQINLAISIH 218 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++ LR+ L+P+NR++P + +I++ R+Y + RITFEY ++ G+ND A L Sbjct: 219 APNDKLRSKLMPVNRRFPFDDVIESLRYYQAKTGR-RITFEYALIGGVNDQVEHAEELAD 277 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 ++K + +NLIP N P +Y+ + + DI F + G + IR +G DI AACGQ Sbjct: 278 VIKDMNCFVNLIPVNHVPERKYVRTSRNDIFKFQRALADKGVNVTIRREQGHDIAAACGQ 337 Query: 365 LKSLSKRIP 373 L++ + Sbjct: 338 LRAKHMELR 346 >gi|57866756|ref|YP_188367.1| radical SAM protein [Staphylococcus epidermidis RP62A] gi|242242500|ref|ZP_04796945.1| Fe-S-cluster redox enzyme [Staphylococcus epidermidis W23144] gi|81674923|sp|Q5HPX3|RLMN_STAEQ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|57637414|gb|AAW54202.1| radical SAM enzyme, Cfr family [Staphylococcus epidermidis RP62A] gi|242234074|gb|EES36386.1| Fe-S-cluster redox enzyme [Staphylococcus epidermidis W23144] Length = 364 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 125/370 (33%), Positives = 207/370 (55%), Gaps = 25/370 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K+S+ + +E+++ L+ G + R QI++W+Y + + M+++S+E+R +L Sbjct: 17 EKQSIYSLRYDEMQQWLIDHG----QQKFRAKQIFEWLYQKRVNTIDEMTNLSKELRQIL 72 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 HF++ V ++ S DGT K+L IETV + + ++CV++QVGC Sbjct: 73 KDHFAMTTLTTVVKQESKDGTIKFLFELQD-----GYTIETVLMRHEYGNSVCVTTQVGC 127 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QVL + L + ++S IV+ Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TNERVSQIVI 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+D + L I +D L+ R IT+STSG +P I EE I + A+SL Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVSL 233 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H +++R+ L+PINR Y ++ L++A R+Y +N R+TFEY + G+ND A +L Sbjct: 234 HGAKDEIRSRLMPINRAYNVDKLMEAIRYYQEKTNR-RVTFEYGLFGGVNDQLEHARDLA 292 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++K + +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AACG Sbjct: 293 HLIKDLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAACG 352 Query: 364 QLKSLSKRIP 373 QL++ +++ Sbjct: 353 QLRAKERQVE 362 >gi|20807945|ref|NP_623116.1| Fe-S-cluster redox protein [Thermoanaerobacter tengcongensis MB4] gi|81590646|sp|Q8R9T4|RLMN_THETN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|20516515|gb|AAM24720.1| predicted Fe-S-cluster redox enzyme [Thermoanaerobacter tengcongensis MB4] Length = 342 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 143/366 (39%), Positives = 205/366 (56%), Gaps = 30/366 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L M EE+EE + +G + R Q++KWIY + + DF M+DIS+ +R L + Sbjct: 3 NLKDMTLEEMEEFFVNLG----ESKFRAKQLYKWIYDKRVTDFDLMTDISKNLRAKLKEI 58 Query: 68 FSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I +I++ ++S D T K+L + I IE V I K T CVS+QVGC++ Sbjct: 59 AYISELKIIERRVSQIDDTVKYLFLLEDKNI-----IEGVAIKYKFGNTACVSTQVGCNM 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC + VR+L A E++ QV+ S G KISNIV+MG Sbjct: 114 KCKFCASAIGGKVRDLKASEMVDQVMAIDSDYG------------------KISNIVLMG 155 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHA 245 GEP N+D V K + I ++ GL KR IT+ST G VP I + EE+ V L+ISLHA Sbjct: 156 SGEPFDNYDEVMKFIKIVNNPYGLKIGKRHITISTVGIVPKIYQFADEELQVNLSISLHA 215 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +N+LRN L+PINR YPLE L+ ACR+Y +N RITFEY ++ G+ND A L+ + Sbjct: 216 PNNELRNELMPINRAYPLEELMKACRYYIEKTNR-RITFEYALIDGVNDKKEHAYQLVDL 274 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG+ +NLIP N + S+ + ++ F + I+ +G + +R G DI AACGQL Sbjct: 275 LKGMLCHVNLIPINYVKEIGFRKSNNEKVMMFKKIIENAGITCTVRRELGSDIEAACGQL 334 Query: 366 KSLSKR 371 + + Sbjct: 335 RRKYLK 340 >gi|329770490|ref|ZP_08261868.1| ribosomal RNA large subunit methyltransferase N [Gemella sanguinis M325] gi|328836239|gb|EGF85908.1| ribosomal RNA large subunit methyltransferase N [Gemella sanguinis M325] Length = 377 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 127/372 (34%), Positives = 203/372 (54%), Gaps = 25/372 (6%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 + +K S+ + ++LEE ++ IG + R QI+ W+Y + + DF M +I + + Sbjct: 15 LKDFEKMSIYSIRLDQLEEYMISIG----EKKFRAKQIYDWLYKKRVTDFSEMKNIPKSL 70 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 + L F I + ++ S DGT K+L + IE+V + K +LCV++ Sbjct: 71 QEKLKDEFEITTLNTIIKQESADGTMKFLFELQDKFT-----IESVLMRNKYGNSLCVTT 125 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC + C+FC + L RNL A EI+ QVL + + G +IS Sbjct: 126 QVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLKVQQE--------------LDKKGERIS 171 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239 +IV+MG+GEP N+D + + I + + R IT+STSG VP I E I + Sbjct: 172 SIVIMGIGEPFENYDEMMDFIKIVNSDESFNIGARHITVSTSGIVPRIYDFANENIQINF 231 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA +N+LR+ ++P+NR Y ++ L++A R+Y +N RITFEY ++ +ND A Sbjct: 232 AVSLHAPTNELRSKIMPVNRAYNIDKLMEALRYYQKTTNR-RITFEYGLMGKVNDQKEHA 290 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L +I+KGI +NLIP N P Y+ + + DI F + +K++ + IR +G DI Sbjct: 291 EKLSEIIKGINCHVNLIPINYVPERNYVRTSKNDIFAFEKILKKNKVNVTIRRTQGDDID 350 Query: 360 AACGQLKSLSKR 371 AACGQL++ ++ Sbjct: 351 AACGQLRAKERK 362 >gi|228474965|ref|ZP_04059693.1| radical SAM enzyme, Cfr family [Staphylococcus hominis SK119] gi|314936620|ref|ZP_07843967.1| radical SAM enzyme, Cfr family [Staphylococcus hominis subsp. hominis C80] gi|228270950|gb|EEK12338.1| radical SAM enzyme, Cfr family [Staphylococcus hominis SK119] gi|313655239|gb|EFS18984.1| radical SAM enzyme, Cfr family [Staphylococcus hominis subsp. hominis C80] Length = 364 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 123/370 (33%), Positives = 205/370 (55%), Gaps = 25/370 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K+S+ + +E++ L++ G + R QI++W+Y + + M+++S+++R LL Sbjct: 17 EKQSIYSLRYDEMQNWLVEHG----QQKFRAKQIFEWLYQKRVDTIDEMTNLSKDLRQLL 72 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +F + V ++ S DGT K+L IETV + ++CV++QVGC Sbjct: 73 KDNFVMTTLTTVVKQESKDGTIKFLFELQD-----GYTIETVLMRHDYGNSVCVTTQVGC 127 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QVL + + + ++S IV+ Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQK--------------ALDATNERVSQIVI 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+D + L I +D L+ R IT+STSG +P I +E I + A+SL Sbjct: 174 MGIGEPFENYDEMMDFLKIVNDDNSLNIGARHITVSTSGIIPRIYDFADEQIQINFAVSL 233 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++R+ L+PINR Y + L++A ++Y +N RITFEY + G+ND A +L Sbjct: 234 HAAKDEIRSKLMPINRAYNVGKLMEAIKYYQEKTNR-RITFEYGLFGGVNDQLEHARDLA 292 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++K + +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AACG Sbjct: 293 HLIKDLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAACG 352 Query: 364 QLKSLSKRIP 373 QL++ +++ Sbjct: 353 QLRAKERQVE 362 >gi|86145592|ref|ZP_01063922.1| hypothetical protein MED222_01522 [Vibrio sp. MED222] gi|218708638|ref|YP_002416259.1| hypothetical protein VS_0616 [Vibrio splendidus LGP32] gi|254807223|sp|B7VJT5|RLMN_VIBSL RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|85836563|gb|EAQ54689.1| hypothetical protein MED222_01522 [Vibrio sp. MED222] gi|218321657|emb|CAV17609.1| Predicted Fe-S-cluster redox enzyme [Vibrio splendidus LGP32] Length = 380 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 145/387 (37%), Positives = 211/387 (54%), Gaps = 27/387 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ R+ L + + R Q+ KWIY G+ DF+ M++I++++R L Sbjct: 5 KVNLLDFDRKGLRKFFTE---ELNEKAFRAEQVMKWIYHFGVDDFEQMNNINKKLREKLL 61 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I+ P + + + S DGT KW + ++ETVYIP+ R TLCVSSQVGC+ Sbjct: 62 HRCEIVAPIVSEAQHSADGTIKWAMSVGD------QDVETVYIPDGDRATLCVSSQVGCA 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ Q+ A +G + + R I+N+VMM Sbjct: 116 LECKFCSTAQQGFNRNLKVSEIVGQIWRAAREIG----------LEKETGRRPITNVVMM 165 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N N+ SL + D +G S SKRR+T+STSG V + ++ + I V LAISLHA Sbjct: 166 GMGEPLLNMKNLIPSLELMLDDLGFSLSKRRVTVSTSGVVSGLDQMTDNIDVALAISLHA 225 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNLI 303 ++ LR+ ++PIN ++ ++ + + R Y SNA R +T EYV+L +ND A L Sbjct: 226 PNDALRSQIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHARELA 285 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +++K P KINLIPFNP+PG Y I F + + Y+ +R RG DI AACG Sbjct: 286 ELMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMEYNYTVTVRKTRGDDIDAACG 345 Query: 364 QL------KSLSKRIPKVPRQEMQITG 384 QL ++ ++ K + I G Sbjct: 346 QLVGDVIDRTKRTKMLKAASEANLIAG 372 >gi|254228668|ref|ZP_04922092.1| radical SAM enzyme, Cfr family [Vibrio sp. Ex25] gi|262395120|ref|YP_003286974.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. Ex25] gi|151938847|gb|EDN57681.1| radical SAM enzyme, Cfr family [Vibrio sp. Ex25] gi|262338714|gb|ACY52509.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. Ex25] Length = 375 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 143/380 (37%), Positives = 207/380 (54%), Gaps = 23/380 (6%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 +K +L+ R+ + + + R Q+ KWIY G+ DF+ M++I++++R Sbjct: 2 TTEKINLLDFDRKGMRQFFAE---ELGEKAFRADQVMKWIYHFGVDDFEKMTNINKKLRE 58 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L I P + + + S DGT KW + ++ETVYIPE R TLCVSSQV Sbjct: 59 KLLHKCEIKAPTVAEAQHSSDGTIKWAMNVGD------QDVETVYIPEDDRATLCVSSQV 112 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L C FC T Q RNL EI+ QV A +G + + R I+N+ Sbjct: 113 GCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREIG----------LEKETGRRPITNV 162 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL N N+ +L + D +G SKRR+T+STSG V + ++ +I V LAIS Sbjct: 163 VMMGMGEPLLNMKNLIPALELMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAIS 222 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300 LHA ++ LR+ ++PIN ++ ++ + + R Y SNA R +T EYV+L +ND A Sbjct: 223 LHAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHAR 282 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L +++K P KINLIPFNP+PG Y I F + + + ++ +R RG DI A Sbjct: 283 ELAELMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDA 342 Query: 361 ACGQLKSLSKRIPKVPRQEM 380 ACGQL I + R M Sbjct: 343 ACGQLVGDV--IDRTKRTAM 360 >gi|329729989|gb|EGG66380.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis VCU144] Length = 364 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 125/370 (33%), Positives = 207/370 (55%), Gaps = 25/370 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K+S+ + +E+++ L+ G + R QI++W+Y + + M+++S+E+R +L Sbjct: 17 EKQSIYSLRYDEMQQWLIDHG----QQKFRAKQIFEWLYQKRVNTIDEMTNLSKELRQIL 72 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 HF++ V ++ S DGT K+L IETV + + ++CV++QVGC Sbjct: 73 KDHFAMTTLTTVVKQESKDGTIKFLFELQD-----GYTIETVLMRHEYGNSVCVTTQVGC 127 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QVL + L + ++S IV+ Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TNERVSQIVI 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+D + L I +D L+ R IT+STSG +P I EE I + A+SL Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVSL 233 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H +++R+ L+PINR Y ++ L++A R+Y +N R+TFEY + G+ND A +L Sbjct: 234 HGAKDEIRSRLMPINRAYNVDKLMEAIRYYQEKTNR-RVTFEYGLFGGVNDQLEHARDLA 292 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++K + +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AACG Sbjct: 293 HLIKNLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAACG 352 Query: 364 QLKSLSKRIP 373 QL++ +++ Sbjct: 353 QLRAKERQVE 362 >gi|29654554|ref|NP_820246.1| radical SAM protein [Coxiella burnetii RSA 493] gi|154706747|ref|YP_001424689.1| radical SAM family enzyme [Coxiella burnetii Dugway 5J108-111] gi|161830060|ref|YP_001597102.1| radical SAM protein [Coxiella burnetii RSA 331] gi|81628860|sp|Q83C77|RLMN_COXBU RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829741|sp|A9KFV0|RLMN_COXBN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829742|sp|A9NDW2|RLMN_COXBR RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|29541821|gb|AAO90760.1| radical SAM family enzyme [Coxiella burnetii RSA 493] gi|154356033|gb|ABS77495.1| radical SAM family enzyme [Coxiella burnetii Dugway 5J108-111] gi|161761927|gb|ABX77569.1| radical SAM enzyme, Cfr family [Coxiella burnetii RSA 331] Length = 370 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 159/382 (41%), Positives = 225/382 (58%), Gaps = 24/382 (6%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 +K +L+ + EL+ + G P R +Q+ +WI+ RG+ DF M+D+S+ R Sbjct: 1 MTEKINLLNLSEPELQGFIASQGQPL----YRATQLLQWIHQRGVTDFSLMTDLSKPFRQ 56 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L++ + PE+ E++S DGT KWL R +IETV+IP++ RGTLCVSSQV Sbjct: 57 QLSEASFVRVPELALERVSADGTHKWLFRLADNN-----KIETVFIPDRKRGTLCVSSQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L CSFC TG + RNLT EI+ QV LA LL KI+N+ Sbjct: 112 GCALNCSFCATGKEGFNRNLTLAEIIGQVWLAARLL---------------KSPYKITNV 156 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL N++ V ++ + SK R+TLSTSG +P + R+ EE V LA+S Sbjct: 157 VMMGMGEPLLNYEAVVAAMHLMMHDHAYGLSKYRVTLSTSGVIPAMRRLREESPVSLAVS 216 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA ++ LRN+L+P+N+KY L+ LI CR Y + R +TFEYVM++G+ND DA L Sbjct: 217 LHAPNDALRNVLIPLNKKYSLDQLIPLCRDYYSRGSKRCVTFEYVMIEGMNDRLIDAKQL 276 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 I++L +P KINLIPFN + G Y CS + I F +C+ +G+++ +R RG DI AC Sbjct: 277 IRLLADVPCKINLIPFNSFQGTAYRCSTESAISVFQKCLMDAGFNTRVRRTRGDDIAGAC 336 Query: 363 GQLKSLSKRIPKVPRQEMQITG 384 GQL ++ +Q G Sbjct: 337 GQLAGQFHDRTGRHQRWVQKQG 358 >gi|71278436|ref|YP_270905.1| ribosomal RNA large subunit methyltransferase N [Colwellia psychrerythraea 34H] gi|123774847|sp|Q47WB7|RLMN_COLP3 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|71144176|gb|AAZ24649.1| radical SAM enzyme, Cfr family [Colwellia psychrerythraea 34H] Length = 386 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 158/372 (42%), Positives = 212/372 (56%), Gaps = 21/372 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + + E L IG R QI KWIY G DF+ M++I++++R L Sbjct: 7 KVNLLNFDHKSMREYLESIG----EKPFRADQIMKWIYHFGYSDFEQMTNINKKLREKLQ 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++ I P+I ++++S DGT K+ L+ G E+ETV+IPE R TLCVSSQVGC+ Sbjct: 63 RNCIISAPDISEKQVSEDGTIKYALKLE-----GGQEVETVWIPENDRATLCVSSQVGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC T Q RNL+ EI+ QV + +G + R I+NIVMM Sbjct: 118 LECTFCATAQQGFNRNLSMAEIIGQVWRVANDIG----------ATRIAGTRPITNIVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N N+ +L + +G SKRR+T+STSG VP + + +I LAIS+HA Sbjct: 168 GMGEPLLNMKNLIPALDTMLNDLGYGLSKRRVTVSTSGVVPALDMLKAKIDCALAISIHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALNLIK 304 +N LR+ LVPIN+KYPLE I A Y S A + T EYVML +NDS A L Sbjct: 228 PNNKLRDELVPINKKYPLEDFIAAAGRYIEGSKANKQATIEYVMLDHVNDSTDQAHELAH 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 LKG+P+KINLIPFNP+PG Y S I F + ++ G + R RG DI AACGQ Sbjct: 288 ALKGLPSKINLIPFNPYPGSPYSRSSNSRIDRFDKVLQSYGLTVITRRTRGEDIDAACGQ 347 Query: 365 LKS-LSKRIPKV 375 L + R + Sbjct: 348 LAGDVFDRTKRS 359 >gi|315646180|ref|ZP_07899300.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus vortex V453] gi|315278379|gb|EFU41695.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus vortex V453] Length = 346 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 129/369 (34%), Positives = 202/369 (54%), Gaps = 25/369 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K + EEL+ + G P R +QI+ W+YV+ + DF+ M+++S+E+R L Sbjct: 2 KPFIYDYSLEELQAWAQENGEPA----FRGTQIYDWLYVKRVNDFEEMTNLSKELRGKLE 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 Q FS + + + S DGT K+L IETV + ++CV++QVGC Sbjct: 58 QQFSFVTLSEITKLESKDGTVKFLFGLHDD-----HAIETVIMKHNYGNSICVTTQVGCR 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC + L RNLT+ EI+ QV+ A+ + + G ++S+IV+M Sbjct: 113 IGCTFCASTLGGLKRNLTSGEIVAQVVQAQKI--------------LDKTGERVSSIVIM 158 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G GEP N++ K L GL+ +R IT+STSG VPNI + EE + LAIS+H Sbjct: 159 GSGEPFENYEATMKFLRTMIHEKGLNIGQRHITVSTSGIVPNIYKFTEENTQINLAISIH 218 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++ LR+ L+P+NR++P + +I++ RHY + RITFEY ++ G+ND A L Sbjct: 219 APNDKLRSKLMPVNRRFPFDDVIESLRHYQAKTGR-RITFEYALIGGVNDQVEHAEELAD 277 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 ++K + +NLIP N P +Y+ + + DI F + G + IR +G DI AACGQ Sbjct: 278 VIKDMNCFVNLIPVNHVPERKYVRTSRNDIFKFQRALADKGVNVTIRREQGHDIAAACGQ 337 Query: 365 LKSLSKRIP 373 L++ + Sbjct: 338 LRAKHMELR 346 >gi|27467811|ref|NP_764448.1| hypothetical protein SE0893 [Staphylococcus epidermidis ATCC 12228] gi|251810648|ref|ZP_04825121.1| Fe-S-cluster redox enzyme [Staphylococcus epidermidis BCM-HMP0060] gi|282876350|ref|ZP_06285217.1| radical SAM enzyme, Cfr family [Staphylococcus epidermidis SK135] gi|293366817|ref|ZP_06613493.1| cfr family radical SAM enzyme [Staphylococcus epidermidis M23864:W2(grey)] gi|81843839|sp|Q8CSW0|RLMN_STAES RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|27315355|gb|AAO04490.1|AE016746_280 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|251805808|gb|EES58465.1| Fe-S-cluster redox enzyme [Staphylococcus epidermidis BCM-HMP0060] gi|281295375|gb|EFA87902.1| radical SAM enzyme, Cfr family [Staphylococcus epidermidis SK135] gi|291319118|gb|EFE59488.1| cfr family radical SAM enzyme [Staphylococcus epidermidis M23864:W2(grey)] gi|329736269|gb|EGG72541.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis VCU028] gi|329736607|gb|EGG72873.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis VCU045] Length = 364 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 125/370 (33%), Positives = 207/370 (55%), Gaps = 25/370 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K+S+ + +E+++ L+ G + R QI++W+Y + + M+++S+E+R +L Sbjct: 17 EKQSIYSLRYDEMQQWLIDHG----QQKFRAKQIFEWLYQKRVNTIDEMTNLSKELRQIL 72 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 HF++ V ++ S DGT K+L IETV + + ++CV++QVGC Sbjct: 73 KDHFAMTTLTTVVKQESKDGTIKFLFELQD-----GYTIETVLMRHEYGNSVCVTTQVGC 127 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QVL + L + ++S IV+ Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TNERVSQIVI 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+D + L I +D L+ R IT+STSG +P I EE I + A+SL Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVSL 233 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H +++R+ L+PINR Y ++ L++A R+Y +N R+TFEY + G+ND A +L Sbjct: 234 HGAKDEIRSRLMPINRAYNVDKLMEAIRYYQEKTNR-RVTFEYGLFGGVNDQLEHARDLA 292 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++K + +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AACG Sbjct: 293 HLIKNLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAACG 352 Query: 364 QLKSLSKRIP 373 QL++ +++ Sbjct: 353 QLRAKERQVE 362 >gi|260776635|ref|ZP_05885530.1| ribosomal RNA large subunit methyltransferase N [Vibrio coralliilyticus ATCC BAA-450] gi|260607858|gb|EEX34123.1| ribosomal RNA large subunit methyltransferase N [Vibrio coralliilyticus ATCC BAA-450] Length = 374 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 143/380 (37%), Positives = 208/380 (54%), Gaps = 23/380 (6%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 +K +L+ R+ + + + R Q+ KWIY G+ DF+ M++I++++R Sbjct: 2 TTEKINLLDFDRQGMRKFFAE---ELGEKAFRAEQVMKWIYHFGVDDFEKMTNINKKLRE 58 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L I P + + + S DGT KW ++ ++ETVYIPE R TLCVSSQV Sbjct: 59 KLIHRCEIKAPVVAEAQHSSDGTIKWAMKVGD------QDVETVYIPEDDRATLCVSSQV 112 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L C FC T Q RNL EI+ QV A +G + + R I+N+ Sbjct: 113 GCALECKFCSTAQQGFNRNLKVSEIIGQVWRAAREIG----------LEKETGRRPITNV 162 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL N N+ +L + D +G SKRR+T+STSG V + ++ +I V LAIS Sbjct: 163 VMMGMGEPLLNMKNLIPALELMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGQIDVALAIS 222 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDAL 300 LHA ++ LR+ ++PIN ++ ++ + + R Y SNA R +T EYV+L +ND A Sbjct: 223 LHAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHAR 282 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L +++K P KINLIPFNP+PG Y I F + + + ++ +R RG DI A Sbjct: 283 ELAELMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDA 342 Query: 361 ACGQLKSLSKRIPKVPRQEM 380 ACGQL I + R M Sbjct: 343 ACGQLVGDV--IDRTKRTAM 360 >gi|223043733|ref|ZP_03613776.1| radical SAM enzyme, Cfr family [Staphylococcus capitis SK14] gi|222442830|gb|EEE48932.1| radical SAM enzyme, Cfr family [Staphylococcus capitis SK14] Length = 364 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 123/370 (33%), Positives = 206/370 (55%), Gaps = 25/370 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K+S+ + +E+++ L+ G + R QI++W+Y + + M+++S+++R +L Sbjct: 17 DKQSIYSLRYDEMQQWLIDHG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKDLRQVL 72 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +F++ V ++ S DGT K+L IETV + + ++CV++QVGC Sbjct: 73 KDNFAMTTLTTVVKQESKDGTIKFLFELQD-----GYTIETVLMRHEYGNSVCVTTQVGC 127 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QVL + L + ++S IV+ Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TDERVSQIVI 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+D + L I +D L+ R IT+STSG +P I EE I + A+SL Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVSL 233 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H +++R+ L+PINR Y +E L++A ++Y +N R+TFEY + G+ND A +L Sbjct: 234 HGAKDEIRSRLMPINRAYNVEKLMEAIKYYQEQTNR-RVTFEYGLFGGVNDQLEHARDLA 292 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++K + +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AACG Sbjct: 293 HLIKNLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAACG 352 Query: 364 QLKSLSKRIP 373 QL++ +++ Sbjct: 353 QLRAKERQVE 362 >gi|281601919|gb|ADA74903.1| protein yfgB [Shigella flexneri 2002017] Length = 340 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 151/350 (43%), Positives = 202/350 (57%), Gaps = 19/350 (5%) Query: 38 IWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCI 97 + KW+Y +F M+DI++ +R L + I PE+V+E+ S DGT KW + Sbjct: 1 MMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGD--- 57 Query: 98 GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157 +ETVYIPE R TLCVSSQVGC+L C FC T Q RNL EI+ QV A + Sbjct: 58 ---QRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKI 114 Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217 +G + R I+N+VMMGMGEPL N +NV ++ I D G SKRR+ Sbjct: 115 VG----------AAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRV 164 Query: 218 TLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277 TLSTSG VP + ++G+ I V LAISLHA ++++R+ +VPIN+KY +E + A R Y S Sbjct: 165 TLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKS 224 Query: 278 NAR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIV 335 NA R+T EYVML +ND A L ++LK P KINLIP+NP+P Y S I Sbjct: 225 NANQGRVTIEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFPDAPYGRSSNSRID 284 Query: 336 TFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS-KRIPKVPRQEMQITG 384 FS+ + G+++ +R RG DI AACGQL R + R+ MQ Sbjct: 285 RFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKRMQGEA 334 >gi|55823590|ref|YP_142031.1| ribosomal RNA large subunit methyltransferase N [Streptococcus thermophilus CNRZ1066] gi|116628382|ref|YP_821001.1| hypothetical protein STER_1660 [Streptococcus thermophilus LMD-9] gi|81558991|sp|Q5LY98|RLMN_STRT1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|122267023|sp|Q03J17|RLMN_STRTD RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|55739575|gb|AAV63216.1| conserved hypothetical protein [Streptococcus thermophilus CNRZ1066] gi|116101659|gb|ABJ66805.1| Predicted Fe-S-cluster redox enzyme [Streptococcus thermophilus LMD-9] Length = 389 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 134/373 (35%), Positives = 215/373 (57%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ G+ R+EL + ++ G + R +QIW W+Y + ++ F+ M++IS++ LN Sbjct: 25 KPSIYGLTRDELIDWAVEHG----EKKFRATQIWDWLYKKRVQSFEEMTNISKDFIAKLN 80 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 81 DNFCVNPLKQRIVQESKDGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 135 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+LTA EI+ Q++L + D G ++S++V+M Sbjct: 136 IGCTFCASGLIKKQRDLTAGEIVAQIMLVQKYFDD------------RGDGERVSHVVVM 183 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+DNV + L ++ GL+ R IT+STSG P I E + V LA+SLH Sbjct: 184 GIGEPFDNYDNVLRFLRTINNDNGLAIGARHITVSTSGLAPKIKEFANEGVQVNLAVSLH 243 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +NDLR+ ++ INR +PLE L +A +Y +N R+TFEY+ML +ND P +A L Sbjct: 244 APNNDLRSSIMRINRSFPLEKLFEAIEYYIQTTNR-RVTFEYIMLNEVNDHPENAQELAD 302 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 + K I + INLIP+NP + Y S ++ + F + +K++G + +R G DI AA Sbjct: 303 LTKKIRKLSYINLIPYNPVSEHDHYSRSTKERVAAFYDVLKKNGVNCVVRQEHGTDIDAA 362 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 363 CGQLRSNTMKRDR 375 >gi|153208845|ref|ZP_01947069.1| radical SAM enzyme, Cfr family [Coxiella burnetii 'MSU Goat Q177'] gi|165921447|ref|ZP_02219635.1| radical SAM enzyme, Cfr family [Coxiella burnetii RSA 334] gi|212218666|ref|YP_002305453.1| radical SAM family enzyme [Coxiella burnetii CbuK_Q154] gi|254807166|sp|B6J7Q9|RLMN_COXB1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|120575696|gb|EAX32320.1| radical SAM enzyme, Cfr family [Coxiella burnetii 'MSU Goat Q177'] gi|165916762|gb|EDR35366.1| radical SAM enzyme, Cfr family [Coxiella burnetii RSA 334] gi|212012928|gb|ACJ20308.1| radical SAM family enzyme [Coxiella burnetii CbuK_Q154] Length = 370 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 159/382 (41%), Positives = 225/382 (58%), Gaps = 24/382 (6%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 +K +L+ + EL+ + G P R +Q+ +WI+ RG+ DF M+D+S+ R Sbjct: 1 MTEKINLLNLSETELQGFIASQGQPL----YRATQLLQWIHQRGVTDFSLMTDLSKPFRQ 56 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L++ + PE+ E++S DGT KWL R +IETV+IP++ RGTLCVSSQV Sbjct: 57 QLSEASFVRVPELALERVSADGTHKWLFRLADNN-----KIETVFIPDRKRGTLCVSSQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L CSFC TG + RNLT EI+ QV LA LL KI+N+ Sbjct: 112 GCALNCSFCATGKEGFNRNLTLAEIIGQVWLAARLL---------------KSPYKITNV 156 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL N++ V ++ + SK R+TLSTSG +P + R+ EE V LA+S Sbjct: 157 VMMGMGEPLLNYEAVVAAMHLMMHDHAYGLSKYRVTLSTSGVIPAMRRLREESPVSLAVS 216 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA ++ LRN+L+P+N+KY L+ LI CR Y + R +TFEYVM++G+ND DA L Sbjct: 217 LHAPNDALRNVLIPLNKKYSLDQLIPLCRDYYSRGSKRCVTFEYVMIEGMNDRLIDAKQL 276 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 I++L +P KINLIPFN + G Y CS + I F +C+ +G+++ +R RG DI AC Sbjct: 277 IRLLADVPCKINLIPFNSFQGTAYRCSTESAISVFQKCLMDAGFNTRVRRTRGDDIAGAC 336 Query: 363 GQLKSLSKRIPKVPRQEMQITG 384 GQL ++ +Q G Sbjct: 337 GQLAGQFHDRTGRHQRWVQKQG 358 >gi|314933392|ref|ZP_07840757.1| radical SAM enzyme, Cfr family [Staphylococcus caprae C87] gi|313653542|gb|EFS17299.1| radical SAM enzyme, Cfr family [Staphylococcus caprae C87] Length = 364 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 124/370 (33%), Positives = 206/370 (55%), Gaps = 25/370 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K+S+ + +E+++ L+ G + R QI++W+Y + + M+++S+E+R +L Sbjct: 17 DKQSIYSLRYDEMQQWLIDHG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKELRQVL 72 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +F++ V ++ S DGT K+L IETV + + ++CV++QVGC Sbjct: 73 KDNFAMTTLTTVVKQESKDGTIKFLFELQD-----GYTIETVLMRHEYGNSVCVTTQVGC 127 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QVL + L + ++S IV+ Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TDERVSQIVI 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+D + L I +D L+ R IT+STSG +P I EE I + A+SL Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVSL 233 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H +++R+ L+PINR Y +E L++A ++Y +N R+TFEY + G+ND A +L Sbjct: 234 HGAKDEIRSRLMPINRAYNVEKLMEAIKYYQEQTNR-RVTFEYGLFGGVNDQLEHARDLA 292 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++K + +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AACG Sbjct: 293 HLIKNLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAACG 352 Query: 364 QLKSLSKRIP 373 QL++ +++ Sbjct: 353 QLRAKERQVE 362 >gi|228477270|ref|ZP_04061908.1| radical SAM enzyme, Cfr family [Streptococcus salivarius SK126] gi|228251289|gb|EEK10460.1| radical SAM enzyme, Cfr family [Streptococcus salivarius SK126] Length = 389 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 134/373 (35%), Positives = 216/373 (57%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ G+ R+EL + ++ G + R +QIW W+Y + ++ F+ M++IS++ LN Sbjct: 25 KPSIYGLTRDELIDWAMEHG----EKKFRATQIWDWLYKKRVQSFEEMTNISKDFIAKLN 80 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 81 ENFCVNPLKQRIVQESKDGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 135 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+LTA EI+ Q++L + D G ++S++V+M Sbjct: 136 IGCTFCASGLIKKQRDLTAGEIVAQIMLVQKYFDD------------RGDGERVSHVVVM 183 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+DNV + L ++ GL+ R IT+STSG P I E + V LA+SLH Sbjct: 184 GIGEPFDNYDNVLRFLRTINNDNGLAIGARHITVSTSGLAPKIKEFANEGVQVNLAVSLH 243 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +NDLR+ ++ INR +PLE L +A +Y +N R+TFEY+ML +ND P +A L Sbjct: 244 APNNDLRSSIMRINRSFPLEKLFEAIEYYIQTTNR-RVTFEYIMLNEVNDHPENAQELAD 302 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 + K I + INLIP+NP + Y S ++ + F + +K++G + +R G DI AA Sbjct: 303 LTKKIRKLSYINLIPYNPVSEHDQYSRSTKERVAAFYDVLKKNGVNCVVRQEHGTDIDAA 362 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 363 CGQLRSNTMKRDR 375 >gi|84387623|ref|ZP_00990640.1| hypothetical protein V12B01_09136 [Vibrio splendidus 12B01] gi|84377468|gb|EAP94334.1| hypothetical protein V12B01_09136 [Vibrio splendidus 12B01] Length = 380 Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats. Identities = 145/387 (37%), Positives = 211/387 (54%), Gaps = 27/387 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ R+ L + + R Q+ KWIY G+ DF+ M++I++++R L Sbjct: 5 KVNLLDFDRKGLRKFFTE---ELNEKAFRAEQVMKWIYHFGVDDFEQMNNINKKLREKLL 61 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I+ P + + + S DGT KW + ++ETVYIP+ R TLCVSSQVGC+ Sbjct: 62 HRCEIVAPIVSEAQHSADGTIKWAMSVGD------QDVETVYIPDGDRATLCVSSQVGCA 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ Q+ A +G + + R I+N+VMM Sbjct: 116 LECKFCSTAQQGFNRNLKVSEIVGQIWRAAREIG----------LEKDTGRRPITNVVMM 165 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N N+ SL + D +G S SKRR+T+STSG V + ++ + I V LAISLHA Sbjct: 166 GMGEPLLNMKNLIPSLELMLDDLGFSLSKRRVTVSTSGVVSGLDQMTDNIDVALAISLHA 225 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNLI 303 ++ LR+ ++PIN ++ ++ + + R Y SNA R +T EYV+L +ND A L Sbjct: 226 PNDALRSQIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHARELA 285 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +++K P KINLIPFNP+PG Y I F + + Y+ +R RG DI AACG Sbjct: 286 ELMKETPCKINLIPFNPYPGSPYKKPSNSRIDRFQKTLMEYNYTVTVRKTRGDDIDAACG 345 Query: 364 QL------KSLSKRIPKVPRQEMQITG 384 QL ++ ++ K + I G Sbjct: 346 QLVGDVIDRTKRTKMLKAASEANLIAG 372 >gi|283852881|ref|ZP_06370142.1| radical SAM enzyme, Cfr family [Desulfovibrio sp. FW1012B] gi|283571710|gb|EFC19709.1| radical SAM enzyme, Cfr family [Desulfovibrio sp. FW1012B] Length = 350 Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats. Identities = 138/362 (38%), Positives = 201/362 (55%), Gaps = 22/362 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +LI + ELE ++ +G P R Q+W+W++ +G RD M+D S+ +R L + Sbjct: 2 TNLIDLTFHELETLVVSLGEPP----YRARQVWQWLWQKGCRDIAAMTDTSKALRARLAE 57 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 +I +P++ S DGT K+LL G +E V IPEK T C+S+QVGC++ Sbjct: 58 VATIAWPQVARVSESADGTVKFLLTL-----GDGESVECVLIPEKDHYTACLSTQVGCAM 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC TG RN+T E+L QVL+AR ++ V + N+V MG Sbjct: 113 GCAFCATGMMGFRRNMTPGEMLGQVLVARQY------------LLEKGVALALRNLVFMG 160 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N+DN+ K+L G S RRIT+ST+G ++ +G LA+SLHA Sbjct: 161 MGEPLLNYDNLVKTLEALHHPQGFDISGRRITVSTAGVARHLLDLGRTGLCSLAVSLHAP 220 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 + LR ++P K PL LI+ R YP + R+TFEY+ML G+NDS DA L+++L Sbjct: 221 TQALREKIMPGAAKLPLGELIEILRQYP-MKPRERLTFEYLMLDGVNDSLEDARELVRLL 279 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + AK+NLI FN PG Y + + F E +K G ++ +R +G DI AACGQL+ Sbjct: 280 SRVKAKVNLIVFNATPGLPYQPPPAERVFAFQEALKAKGLTATVRKSKGADIAAACGQLR 339 Query: 367 SL 368 + Sbjct: 340 AE 341 >gi|212212364|ref|YP_002303300.1| radical SAM family enzyme [Coxiella burnetii CbuG_Q212] gi|254807167|sp|B6IZM7|RLMN_COXB2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|212010774|gb|ACJ18155.1| radical SAM family enzyme [Coxiella burnetii CbuG_Q212] Length = 370 Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats. Identities = 159/382 (41%), Positives = 225/382 (58%), Gaps = 24/382 (6%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 +K +L+ + EL+ + G P R +Q+ +WI+ RG+ DF M+D+S+ R Sbjct: 1 MTEKINLLNLSEPELQGFIASQGQPL----YRATQLLQWIHQRGVTDFSLMTDLSKPFRQ 56 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L++ + PE+ E++S DGT KWL R +IETV+IP++ RGTLCVSSQV Sbjct: 57 QLSEASFVRVPELALERVSADGTHKWLFRLADNN-----KIETVFIPDRKRGTLCVSSQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L CSFC TG + RNLT EI+ QV LA LL KI+N+ Sbjct: 112 GCALNCSFCATGKEGFNRNLTLAEIIGQVWLAARLL---------------KSPYKITNV 156 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL N++ V ++ + SK R+TLSTSG +P + R+ EE V LA+S Sbjct: 157 VMMGMGEPLLNYEAVVAAMHLMMHDHAYGLSKYRVTLSTSGVIPAMRRLREESPVSLAVS 216 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA ++ LRN+L+P+N+KY L+ LI CR Y + R +TFEYVM++G+ND DA L Sbjct: 217 LHAPNDALRNVLIPLNKKYSLDQLIPLCRDYYSRGSKRCVTFEYVMIEGMNDRLIDAKRL 276 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 I++L +P KINLIPFN + G Y CS + I F +C+ +G+++ +R RG DI AC Sbjct: 277 IRLLADVPCKINLIPFNSFQGTAYRCSTESAISVFQKCLMDAGFNTRVRRTRGDDIAGAC 336 Query: 363 GQLKSLSKRIPKVPRQEMQITG 384 GQL ++ +Q G Sbjct: 337 GQLAGQFHDRTGRHQRWVQKQG 358 >gi|55821670|ref|YP_140112.1| ribosomal RNA large subunit methyltransferase N [Streptococcus thermophilus LMG 18311] gi|81560179|sp|Q5M2V3|RLMN_STRT2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|55737655|gb|AAV61297.1| conserved hypothetical protein [Streptococcus thermophilus LMG 18311] gi|312279010|gb|ADQ63667.1| Ribosomal RNA large subunit methyltransferase N [Streptococcus thermophilus ND03] Length = 389 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 135/373 (36%), Positives = 216/373 (57%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ G+ R+EL + ++ G + R +QIW W+Y + ++ F+ M++IS++ LN Sbjct: 25 KPSIYGLTRDELIDWAVEHG----EKKFRATQIWDWLYKKRVQSFEEMTNISKDFIAKLN 80 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 81 DNFCVNPLKQRIVQESKDGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 135 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+LTA EI+ Q++L + D G ++S++V+M Sbjct: 136 IGCTFCASGLIKKQRDLTAGEIVAQIMLVQKYFDD------------RGDGERVSHVVVM 183 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+DNV + L ++ GL+ R IT+STSG P I E + V LA+SLH Sbjct: 184 GIGEPFDNYDNVLRFLRTINNDNGLAIGARHITVSTSGLAPKIKEFANEGVQVNLAVSLH 243 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +NDLR+ ++ INR +PLE L +A +Y +N R+TFEY+ML +ND P +A L Sbjct: 244 APNNDLRSSIMRINRSFPLEKLFEAIEYYIQTTNR-RVTFEYIMLNEVNDHPENAQELAD 302 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 + K I + INLIP+NP + Y S ++ + TF + +K++G + +R G DI AA Sbjct: 303 LTKKIRKLSYINLIPYNPVSEHDHYSRSTKERVATFYDVLKKNGVNCVVRQEHGTDIDAA 362 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 363 CGQLRSNTMKRDR 375 >gi|322373635|ref|ZP_08048171.1| radical SAM enzyme, Cfr family [Streptococcus sp. C150] gi|321278677|gb|EFX55746.1| radical SAM enzyme, Cfr family [Streptococcus sp. C150] Length = 389 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 135/373 (36%), Positives = 216/373 (57%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ G+ REEL + ++ G + R +QIW W+Y + ++ F+ M++IS++ LN Sbjct: 25 KPSIYGLTREELIDWAMEHG----EKKFRATQIWDWLYKKRVQSFEEMTNISKDFIAKLN 80 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 81 ENFCVNPLKQRIVQESKDGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 135 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+LTA EI+ Q++L + D G ++S++V+M Sbjct: 136 IGCTFCASGLIKKQRDLTAGEIVAQIMLVQKYFDD------------RGDGERVSHVVVM 183 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+DNV + L ++ GL+ R IT+STSG P I E + V LA+SLH Sbjct: 184 GIGEPFDNYDNVLRFLRTINNDNGLAIGARHITVSTSGLAPKIKEFANEGVQVNLAVSLH 243 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +NDLR+ ++ INR +PLE L +A +Y +N R+TFEY+ML +ND P +A L Sbjct: 244 APNNDLRSSIMRINRSFPLEKLFEAIEYYIQTTNR-RVTFEYIMLNEVNDHPENAQELAD 302 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 + K I + INLIP+NP + Y S ++ + F + +K++G + +R G DI AA Sbjct: 303 LTKKIRKLSYINLIPYNPVSEHDQYSRSTKERVAAFYDVLKKNGVNCVVRQEHGTDIDAA 362 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 363 CGQLRSNTMKRDR 375 >gi|73662863|ref|YP_301644.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123775339|sp|Q49WZ9|RLMN_STAS1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|72495378|dbj|BAE18699.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 364 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 125/370 (33%), Positives = 210/370 (56%), Gaps = 25/370 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K+S+ + +E+++ L++ G + R QI++W+Y + + D M+++S+E+R +L Sbjct: 17 EKQSIYSLRYDEMQDWLVQNG----QQKFRAKQIFEWLYEKRVDDIDDMTNLSKELREVL 72 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +F++ V ++ S DGT K+L IETV + + ++CV++QVGC Sbjct: 73 KDNFTMTTMTTVVKQESKDGTIKFLFELQD-----GYTIETVLMRHEYGNSVCVTTQVGC 127 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QVL + L + ++S IV+ Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDE--------------TEERVSQIVI 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+D + L I +D GL+ R IT+STSG +P I +E I + A+SL Sbjct: 174 MGIGEPFENYDEMMDFLKIVNDDNGLNIGARHITVSTSGIIPRIYDFADEDIQINFAVSL 233 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H ++++R+ L+PINR Y +E L++A +Y +N RITFEY + G+ND A L Sbjct: 234 HGANDEIRSRLMPINRAYNVEKLMEAIHYYQEKTNR-RITFEYGLFGGVNDQIEHARELA 292 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +++ + +NLIP N P Y+ + ++DI F + +KR G ++ IR +G DI AACG Sbjct: 293 HLIQELNCHVNLIPVNHVPERNYVKTPKEDIFKFEKELKRLGINATIRREQGADIDAACG 352 Query: 364 QLKSLSKRIP 373 QL++ +++ Sbjct: 353 QLRAKERKVE 362 >gi|110802908|ref|YP_699026.1| ribosomal RNA large subunit methyltransferase N [Clostridium perfringens SM101] gi|123341702|sp|Q0SS81|RLMN_CLOPS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|110683409|gb|ABG86779.1| radical SAM enzyme, Cfr family [Clostridium perfringens SM101] Length = 347 Score = 430 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 146/362 (40%), Positives = 213/362 (58%), Gaps = 29/362 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++++ EEL+E + + G R QI+ WIY + + +F+ M +IS+ + L++ Sbjct: 2 KNILDFTLEELKEWMKENG----ENAFRAKQIFDWIYKKEVFNFEEMKNISKALIGKLSE 57 Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +F I PE++D S DGTRK LL +G IE V + K ++CVS+Q+GC Sbjct: 58 NFYIGIPEVIDYLSSSEDGTRKILL-----GLGDGNIIECVIMKYKYGNSICVSTQIGCR 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC + + +VRNLTA EIL +VL+ + LLG+ +ISNIV+M Sbjct: 113 MGCKFCASTLEGMVRNLTAGEILSEVLIGQKLLGE-----------------RISNIVLM 155 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244 G GEPL N+DNV K L I + GL+ +R ITLST G VP I + + E+ V LAISLH Sbjct: 156 GSGEPLDNYDNVMKFLEIVNADYGLNIGQRHITLSTCGLVPKIREMADKEMQVTLAISLH 215 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AVS++ R ++PI KY + ++DAC +Y + RITFEY ++ G+ND+ DA +L + Sbjct: 216 AVSDEKRKTIMPIANKYSISEILDACNYYIEKTGR-RITFEYSLVSGVNDTKEDAKSLGR 274 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKG+ +NLIP N E+ S +KDI TF +K G + +R G DI AACGQ Sbjct: 275 LLKGMLCHVNLIPVNEIKENEFKKSTKKDIETFLNTLKTYGVEATVRREMGSDINAACGQ 334 Query: 365 LK 366 L+ Sbjct: 335 LR 336 >gi|312863236|ref|ZP_07723474.1| 23S rRNA m2A2503 methyltransferase [Streptococcus vestibularis F0396] gi|322516113|ref|ZP_08069048.1| cfr family radical SAM enzyme [Streptococcus vestibularis ATCC 49124] gi|311100772|gb|EFQ58977.1| 23S rRNA m2A2503 methyltransferase [Streptococcus vestibularis F0396] gi|322125408|gb|EFX96758.1| cfr family radical SAM enzyme [Streptococcus vestibularis ATCC 49124] Length = 389 Score = 430 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 134/373 (35%), Positives = 216/373 (57%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ G+ R+EL + ++ G + R +QIW W+Y + ++ F+ M++IS++ LN Sbjct: 25 KHSIYGLTRDELIDWAMEHG----EKKFRATQIWDWLYKKRVQSFEEMTNISKDFIAKLN 80 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 81 ENFCVNPLKQRIVQESKDGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 135 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+LTA EI+ Q++L + D G ++S++V+M Sbjct: 136 IGCTFCASGLIKKQRDLTAGEIVAQIMLVQKYFDD------------RGDGERVSHVVVM 183 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+DNV + L ++ GL+ R IT+STSG P I E + V LA+SLH Sbjct: 184 GIGEPFDNYDNVLRFLRTINNDNGLAIGARHITVSTSGLAPKIKEFANEGVQVNLAVSLH 243 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +NDLR+ ++ INR +PLE L +A +Y +N R+TFEY+ML +ND P +A L Sbjct: 244 APNNDLRSSIMRINRSFPLEKLFEAIEYYIQTTNR-RVTFEYIMLNEVNDHPENAQELAD 302 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 + K I + INLIP+NP + Y S ++ + F + +K++G + +R G DI AA Sbjct: 303 LTKKIRKLSYINLIPYNPVSEHDQYSRSTKERVAAFYDVLKKNGVNCVVRQEHGTDIDAA 362 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 363 CGQLRSNTMKRDR 375 >gi|237745509|ref|ZP_04575989.1| radical SAM enzyme [Oxalobacter formigenes HOxBLS] gi|229376860|gb|EEO26951.1| radical SAM enzyme [Oxalobacter formigenes HOxBLS] Length = 387 Score = 430 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 154/383 (40%), Positives = 218/383 (56%), Gaps = 20/383 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + +L+G +L E + R Q+ +WI+ G+ DF GM+D+++ +R L Sbjct: 5 RTNLLGFTPVQLVEYCKTL----NEKPFRAKQLQRWIHQSGVSDFAGMTDLAKSLRGKLE 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + P+++ + +S DGTRKWLL +G IETVYIPE +RGTLCVS+Q GC+ Sbjct: 61 GCAEVRAPKVLKDHLSADGTRKWLL-----DVGEGNAIETVYIPEDNRGTLCVSTQAGCA 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q RNLT +EI+ Q+ +A + M R+ISN+VMM Sbjct: 116 VNCLFCSTGKQGFSRNLTTDEIIGQLWMAE------FAIRRSKNMAANQSERQISNVVMM 169 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFD +L + D S+RR+T+STSG VP I R+ +E V LA+SLHA Sbjct: 170 GMGEPLFNFDASVNALKLMLDDNAYGLSRRRVTVSTSGVVPMIDRLAKECPVALAVSLHA 229 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 S+ LR++LVP+NRK+PL L+ ACR Y + ITFEY ML GIND+ A L+++ Sbjct: 230 PSDKLRDMLVPLNRKHPLSELMAACRRYLEYAPRDFITFEYCMLDGINDTDEHAKELVEL 289 Query: 306 LKG----IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +K + K+NLIPFN P S I F++ + +G + +R RG DI AA Sbjct: 290 VKHGSDPVSCKLNLIPFNSIPMPGLKRSSDARISAFAKILLDAGIVTTVRKTRGEDIEAA 349 Query: 362 CGQLKSLSKRIPKVPRQEMQITG 384 CG L + +V R+ M +G Sbjct: 350 CGLLAGDVRDRTRV-RERMAESG 371 >gi|114332136|ref|YP_748358.1| radical SAM enzyme, Cfr family protein [Nitrosomonas eutropha C91] gi|122313183|sp|Q0AE39|RLMN_NITEC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|114309150|gb|ABI60393.1| 23S rRNA m(2)A-2503 methyltransferase [Nitrosomonas eutropha C91] Length = 379 Score = 430 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 148/374 (39%), Positives = 215/374 (57%), Gaps = 14/374 (3%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+ + L ++G R Q+ +W++ G +F MSD+++ R L + Sbjct: 2 INLLDFNKTGLIHFCEEMG----EKPYRARQLLRWVHRFGKTEFIEMSDLAKTFRQKLME 57 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + PEI+ + + DGTRKWLL G +E V+IPE +RGTLCVSSQVGC+L Sbjct: 58 RAVVHPPEIISDHTAGDGTRKWLL-----STGTGNAVEMVFIPEPNRGTLCVSSQVGCAL 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSL----LGDFPGCEDIEGMVIPSVGRK-ISN 181 CSFC TG Q RNL+ EI+ Q+ A L +G+ + + + R+ ++N Sbjct: 113 ACSFCSTGRQGFNRNLSVAEIIGQLWWANRLLEGQVGELFSPDVAQIRADNTDTRRPVTN 172 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 +VMMGMGEPL NF+NV +L + S+RR+T+STSG VP + R+ E V LA+ Sbjct: 173 VVMMGMGEPLANFENVVTALDLMLSDDAYGLSRRRVTVSTSGLVPALDRLRERCPVALAV 232 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++ LR+ LVPIN+KYP+ L+ AC Y + ITFEYVML+ +NDS A Sbjct: 233 SLHAPNDALRDQLVPINKKYPIRDLLAACERYLPAAPRDFITFEYVMLRDVNDSIALARE 292 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L+++++ IP K+NLIPFN + G Y S+ I F + + ++G + +R RG DI AA Sbjct: 293 LVQVVRNIPCKLNLIPFNTFAGSGYERSNTDAIDNFRDVLMQAGIVTTVRKTRGDDIAAA 352 Query: 362 CGQLKSLSKRIPKV 375 CGQL K + Sbjct: 353 CGQLAGQVKDKTRR 366 >gi|76787054|ref|YP_329191.1| ribosomal RNA large subunit methyltransferase N [Streptococcus agalactiae A909] gi|123730855|sp|Q3K2R2|RLMN_STRA1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|76562111|gb|ABA44695.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae A909] Length = 368 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 133/380 (35%), Positives = 212/380 (55%), Gaps = 26/380 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+EL ++ G + R SQIW W+Y + ++ F M++IS++ LLN Sbjct: 11 KPSIYSLTRDELIAWAIEHG----EKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLN 66 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 67 ENFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 121 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI Q++L + + G ++S+IV+M Sbjct: 122 IGCTFCASGLIKKQRDLNNGEITAQIMLVQKYFDE------------RGQGERVSHIVVM 169 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+ NV K L +D GL+ R IT+STSG I E + V LA+SLH Sbjct: 170 GIGEPFDNYTNVLKFLRTVNDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 229 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ INR +PLE L A +Y +N R+TFEY+ML G+ND+P +A L Sbjct: 230 APNNELRSSIMRINRSFPLEKLFAAIEYYIETTNR-RVTFEYIMLNGVNDTPENAQELAD 288 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 + K I + +NLIP+NP + Y S ++ + F + +K++G + +R G DI AA Sbjct: 289 LTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYDVLKKNGVNCVVRQEHGTDIDAA 348 Query: 362 CGQLKSLSKRIPKVPRQEMQ 381 CGQL+S + + + + Q Sbjct: 349 CGQLRSNTMKRDRQKAKVGQ 368 >gi|126640570|ref|YP_001083554.1| putative Fe-S-cluster redox enzyme [Acinetobacter baumannii ATCC 17978] Length = 376 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 165/381 (43%), Positives = 225/381 (59%), Gaps = 24/381 (6%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 M R ELE+ IG + R Q+ KWI+ + DF M++IS ++R L Q I Sbjct: 1 MSRAELEKFFEDIG----EKKFRAGQVMKWIHQYFVTDFAEMTNISGKLRAKLEQICEIK 56 Query: 72 YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGTLCVSSQVGCSLT 127 PE+V S DGTRKW+ R G +ETV IP + R TLC+SSQVGC+L Sbjct: 57 APEVVHRHYSKDGTRKWVFRVGE---GSGSLVETVLIPAEDKTGSRKTLCISSQVGCALD 113 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 CSFC TG Q R+LT +EI+ Q+ +A + + E R ++N+VMMGM Sbjct: 114 CSFCSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPVAERE--------RSVTNVVMMGM 165 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL N+D V S+ I D SKRR+TLSTSG VP I ++ ++I V LAISLHA + Sbjct: 166 GEPLLNYDAVLSSMHIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALAISLHAPN 225 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGL----SNARRITFEYVMLKGINDSPRDALNLI 303 ++LRN LVPIN+KYPL LI AC+ Y S + +T EYVML+G+ND P A L+ Sbjct: 226 DELRNELVPINKKYPLAQLIAACQRYIAKDGNESARKHVTIEYVMLEGVNDQPEHAQQLL 285 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+LK +P+KINLIPFNP+P Y S + I++F + + +G+ IR RG DI AACG Sbjct: 286 KLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGDDIDAACG 345 Query: 364 QL-KSLSKRIPKVPRQEMQIT 383 QL ++ R + + + ++ Sbjct: 346 QLVGQVADRTRRAEQWQKKVA 366 >gi|77411450|ref|ZP_00787796.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae CJB111] gi|77162536|gb|EAO73501.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae CJB111] Length = 368 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 133/380 (35%), Positives = 212/380 (55%), Gaps = 26/380 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+EL ++ G + R SQIW W+Y + ++ F M++IS++ LLN Sbjct: 11 KPSIYSLTRDELIAWAIEHG----EKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLN 66 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 67 ENFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 121 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI Q++L + + G ++S+IV+M Sbjct: 122 IGCTFCASGLIKKQRDLNNGEITAQIMLVQKYFDE------------RGQGERVSHIVVM 169 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+ NV K L +D GL+ R IT+STSG I E + V LA+SLH Sbjct: 170 GIGEPFDNYTNVLKFLRTVNDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 229 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ INR +PLE L A +Y +N R+TFEY+ML G+ND+P +A L Sbjct: 230 APNNELRSSIMRINRSFPLEKLFAAIEYYIETTNR-RVTFEYIMLNGVNDTPENAQELAD 288 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 + K I + +NLIP+NP + Y S ++ + F + +K++G + +R G DI AA Sbjct: 289 LTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYDVLKKNGVNCVVRQEHGTDIDAA 348 Query: 362 CGQLKSLSKRIPKVPRQEMQ 381 CGQL+S + + + + Q Sbjct: 349 CGQLRSNTMKRDRQKAKVGQ 368 >gi|18310722|ref|NP_562656.1| radical SAM enzyme, Cfr family [Clostridium perfringens str. 13] gi|110801148|ref|YP_696426.1| radical SAM protein [Clostridium perfringens ATCC 13124] gi|168207267|ref|ZP_02633272.1| radical SAM enzyme, Cfr family [Clostridium perfringens E str. JGS1987] gi|168210627|ref|ZP_02636252.1| radical SAM enzyme, Cfr family [Clostridium perfringens B str. ATCC 3626] gi|168217027|ref|ZP_02642652.1| radical SAM enzyme, Cfr family [Clostridium perfringens NCTC 8239] gi|182625883|ref|ZP_02953649.1| radical SAM enzyme, Cfr family [Clostridium perfringens D str. JGS1721] gi|81766963|sp|Q8XJL6|RLMN_CLOPE RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123049744|sp|Q0TPL4|RLMN_CLOP1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|18145403|dbj|BAB81446.1| conserved hypothetical protein [Clostridium perfringens str. 13] gi|110675795|gb|ABG84782.1| radical SAM enzyme, Cfr family [Clostridium perfringens ATCC 13124] gi|170661362|gb|EDT14045.1| radical SAM enzyme, Cfr family [Clostridium perfringens E str. JGS1987] gi|170711321|gb|EDT23503.1| radical SAM enzyme, Cfr family [Clostridium perfringens B str. ATCC 3626] gi|177908917|gb|EDT71409.1| radical SAM enzyme, Cfr family [Clostridium perfringens D str. JGS1721] gi|182380930|gb|EDT78409.1| radical SAM enzyme, Cfr family [Clostridium perfringens NCTC 8239] Length = 347 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 145/362 (40%), Positives = 213/362 (58%), Gaps = 29/362 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++++ EEL+E + + G R QI+ WIY + + +F+ M +IS+ + L++ Sbjct: 2 KNILDFTLEELKEWMKENGESA----FRAKQIFDWIYKKEVFNFEEMKNISKALIGKLSE 57 Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +F I PE++D S DGTRK LL +G IE V + K ++CVS+Q+GC Sbjct: 58 NFYIGIPEVIDYLSSSEDGTRKILL-----GLGDGNIIECVIMRYKYGNSICVSTQIGCR 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC + + +VRNLTA EIL +VL+ + LLG+ +ISNIV+M Sbjct: 113 MGCKFCASTLEGMVRNLTAGEILSEVLIGQKLLGE-----------------RISNIVLM 155 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244 G GEPL N+DNV K L + + GL+ +R ITLST G VP I + + E+ V LAISLH Sbjct: 156 GSGEPLDNYDNVMKFLELVNADYGLNIGQRHITLSTCGLVPKIREMADKEMQVTLAISLH 215 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AVS++ R ++PI KY + ++DAC +Y + RITFEY ++ G+ND+ DA +L + Sbjct: 216 AVSDEKRKTIMPIANKYSISEILDACNYYIEKTGR-RITFEYSLVSGVNDTKEDAKSLGR 274 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKG+ +NLIP N E+ S +KDI TF +K G + +R G DI AACGQ Sbjct: 275 LLKGMLCHVNLIPVNEIKENEFKKSTKKDIETFLNTLKTYGVEATVRREMGSDINAACGQ 334 Query: 365 LK 366 L+ Sbjct: 335 LR 336 >gi|22536637|ref|NP_687488.1| ribosomal RNA large subunit methyltransferase N [Streptococcus agalactiae 2603V/R] gi|76797765|ref|ZP_00780032.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae 18RS21] gi|77405571|ref|ZP_00782661.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae H36B] gi|81588624|sp|Q8E1A3|RLMN_STRA5 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|22533475|gb|AAM99360.1|AE014212_19 conserved hypothetical protein TIGR00048 [Streptococcus agalactiae 2603V/R] gi|76586913|gb|EAO63404.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae 18RS21] gi|77175793|gb|EAO78572.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae H36B] Length = 368 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 134/380 (35%), Positives = 212/380 (55%), Gaps = 26/380 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+EL ++ G + R SQIW W+Y + ++ F M++IS++ LLN Sbjct: 11 KPSIYSLTRDELIAWAIEHG----EKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLN 66 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 67 ENFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 121 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI Q++L + + G ++S+IV+M Sbjct: 122 IGCTFCASGLIKKQRDLNNGEITAQIMLVQKYFDE------------RGQGERVSHIVVM 169 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+ NV K L +D GL+ R IT+STSG I E + V LA+SLH Sbjct: 170 GIGEPFDNYTNVLKFLRTVNDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 229 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +NDLR+ ++ INR +PLE L A +Y +N R+TFEY+ML G+ND+P +A L Sbjct: 230 APNNDLRSSIMRINRSFPLEKLFAAIEYYIETTNR-RVTFEYIMLNGVNDTPENAQELAD 288 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 + K I + +NLIP+NP + Y S ++ + F + +K++G + +R G DI AA Sbjct: 289 LTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYDVLKKNGVNCVVRQEHGTDIDAA 348 Query: 362 CGQLKSLSKRIPKVPRQEMQ 381 CGQL+S + + + + Q Sbjct: 349 CGQLRSNTMKRDRQKAKVGQ 368 >gi|320546296|ref|ZP_08040616.1| cfr family radical SAM enzyme [Streptococcus equinus ATCC 9812] gi|320449073|gb|EFW89796.1| cfr family radical SAM enzyme [Streptococcus equinus ATCC 9812] Length = 366 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 129/373 (34%), Positives = 214/373 (57%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ G+ R+EL E ++ G + R +QIW W+Y + ++ F+ M++IS++ +LN Sbjct: 9 KPSIYGLTRDELIEWAIEHG----EKKFRATQIWDWLYRKRVQSFEEMTNISKDFIAILN 64 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++F + + + + DGT K+L P + IETV + + ++CV+SQVGC+ Sbjct: 65 ENFCVNPLKQRIVQEASDGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTSQVGCN 119 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + CSFC +G K R+LT+ EI Q+++ + + ++S++V+M Sbjct: 120 MGCSFCASGLIKKQRDLTSGEITSQIMMVQKYFDE------------RGQDERVSHVVVM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+DNV + + ++ GL+ R IT+STSG I E + V LA+SLH Sbjct: 168 GIGEPFDNYDNVLRFVRTINNDNGLAIGARHITISTSGLAHKIREFAHESLQVNLAVSLH 227 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ +NR +PLE L A +Y +N R+TFEY+ML +NDSP +A L Sbjct: 228 APNNELRSQIMRVNRSFPLEKLFAAIEYYVETTNR-RVTFEYIMLNDVNDSPENAQELAD 286 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 + K I + INLIP+NP + Y S ++ + F + +K++G + +R G DI AA Sbjct: 287 LTKKIRKLSYINLIPYNPVSEHDQYSRSSKEHVAAFYDVLKKNGVNCVVRQEHGTDIDAA 346 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 347 CGQLRSNTMKRDR 359 >gi|30248171|ref|NP_840241.1| hypothetical protein NE0145 [Nitrosomonas europaea ATCC 19718] gi|30180056|emb|CAD84056.1| Conserved hypothetical protein 48 [Nitrosomonas europaea ATCC 19718] Length = 361 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 154/361 (42%), Positives = 208/361 (57%), Gaps = 12/361 (3%) Query: 29 RHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKW 88 R Q+ +W++ G DF MSD+++ RH L + + PEIV + + DGTRKW Sbjct: 2 GEKPYRARQLLRWVHQSGKTDFMEMSDLAKGFRHKLMECAVVQLPEIVSDHTAGDGTRKW 61 Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 LL G +E V+IPE SRGTLCVSSQVGC+L CSFC TG Q RNL+ EI+ Sbjct: 62 LL-----STGAGNAVEMVFIPEPSRGTLCVSSQVGCALACSFCSTGRQGFNRNLSVAEII 116 Query: 149 LQVLLARSL-----LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI 203 Q+ A L FP P R ++N+VMMGMGEPL NF+N+ +L + Sbjct: 117 GQLWWANRLLEAGSHDPFPLDTTRVQTDKPETRRPVTNVVMMGMGEPLANFENLVTALDL 176 Query: 204 ASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPL 263 S+RR+T+STSG VP + R+ E V LA+SLHA ++ LR+ LVPIN+KYP+ Sbjct: 177 MLSDDAYGLSRRRVTVSTSGLVPALDRLRERCPVALAVSLHAPNDALRDQLVPINKKYPI 236 Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPG 323 L+ AC Y + ITFEYVMLKG+NDS A L+++++ +P K+NLIPFN + G Sbjct: 237 RDLLAACERYLPAAPRDFITFEYVMLKGVNDSVALARELVQLVRNVPCKLNLIPFNAFSG 296 Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQIT 383 Y S + I F + + ++G + +R RG DI AACGQL + K R T Sbjct: 297 SGYERSGAEAIGNFRDVLMQAGIVTTVRKTRGDDIAAACGQLAGQVR--DKTRRTSGCGT 354 Query: 384 G 384 G Sbjct: 355 G 355 >gi|317495216|ref|ZP_07953586.1| cfr family radical SAM enzyme [Gemella moribillum M424] gi|316914638|gb|EFV36114.1| cfr family radical SAM enzyme [Gemella moribillum M424] Length = 377 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 124/372 (33%), Positives = 203/372 (54%), Gaps = 25/372 (6%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 + +K S+ + ++LEE L+ IG + R QI+ W+Y + I F M ++ + + Sbjct: 15 LKDFEKMSIYSIRLDQLEEYLVSIG----EKKFRAKQIYDWLYKKRITSFTEMKNVPKSL 70 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 + L + F I + ++ S DGT K+L + IE+V + K +LCV++ Sbjct: 71 QEKLAEEFEITTLNTIIKQESIDGTMKFLFELQDKYT-----IESVLMKNKYGNSLCVTT 125 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC + C+FC + L RNL A EI+ QVL + + G +IS Sbjct: 126 QVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLKVQQE--------------LDKRGERIS 171 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239 +IV+MG+GEP N+D + + I + + R IT+STSG VP I E+I + Sbjct: 172 SIVIMGIGEPFENYDEMMDFIKIVNSDESFNIGARHITVSTSGIVPKIYDFANEKIQINF 231 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA +N+LR+ ++P+NR Y ++ L++A ++Y +N RITFEY ++ +ND A Sbjct: 232 AVSLHAPTNELRSKIMPVNRAYNIDKLMEALKYYQKTTNR-RITFEYGLMGKVNDQREHA 290 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L +I+K + +NLIP N P Y+ + + DI F + +K++ + IR +G DI Sbjct: 291 EKLSEIIKDLNCHVNLIPINYVPERNYVRTSKNDIFAFEKVLKKNRVNVTIRRTQGDDID 350 Query: 360 AACGQLKSLSKR 371 AACGQL++ ++ Sbjct: 351 AACGQLRAKERK 362 >gi|168214217|ref|ZP_02639842.1| radical SAM enzyme, Cfr family [Clostridium perfringens CPE str. F4969] gi|170714277|gb|EDT26459.1| radical SAM enzyme, Cfr family [Clostridium perfringens CPE str. F4969] Length = 347 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 145/362 (40%), Positives = 213/362 (58%), Gaps = 29/362 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++++ EEL+E + + G R QI+ WIY + + +F+ M +IS+ + L++ Sbjct: 2 KNILDFTLEELKEWMKENGESA----FRAKQIFDWIYKKEVFNFEEMKNISKALIGKLSE 57 Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +F I PE++D S DGTRK LL +G IE V + K ++CVS+Q+GC Sbjct: 58 NFYIGIPEVIDYLSSSEDGTRKILL-----GLGDGNIIECVIMRYKYGNSICVSTQIGCR 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC + + +VRNLTA EIL +VL+ + LLG+ +ISNIV+M Sbjct: 113 MGCKFCASTLEGMVRNLTAGEILSEVLIGQKLLGE-----------------RISNIVLM 155 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244 G GEPL N+DNV K L + + GL+ +R ITLST G VP I + + E+ V LAISLH Sbjct: 156 GSGEPLDNYDNVMKFLELVNADYGLNIGQRHITLSTCGLVPKIHEMADKEMQVTLAISLH 215 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AVS++ R ++PI KY + ++DAC +Y + RITFEY ++ G+ND+ DA +L + Sbjct: 216 AVSDEKRKTIMPIANKYSISEILDACNYYIEKTGR-RITFEYSLVSGVNDTKEDAKSLGR 274 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKG+ +NLIP N E+ S +KDI TF +K G + +R G DI AACGQ Sbjct: 275 LLKGMLCHVNLIPVNEIKENEFKKSTKKDIETFLNTLKTYGVEATVRREMGSDINAACGQ 334 Query: 365 LK 366 L+ Sbjct: 335 LR 336 >gi|323487018|ref|ZP_08092330.1| hypothetical protein HMPREF9474_04081 [Clostridium symbiosum WAL-14163] gi|323692060|ref|ZP_08106307.1| radical SAM enzyme [Clostridium symbiosum WAL-14673] gi|323399666|gb|EGA92052.1| hypothetical protein HMPREF9474_04081 [Clostridium symbiosum WAL-14163] gi|323503860|gb|EGB19675.1| radical SAM enzyme [Clostridium symbiosum WAL-14673] Length = 350 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 119/375 (31%), Positives = 208/375 (55%), Gaps = 29/375 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K + + EEL++ L +G R Q+++W++ + F M+++S+++R Sbjct: 1 MNKTDIKSLTHEELQDLLKGMG----EKPFRAGQLYRWMHEKLAASFDEMTNLSKDLRGK 56 Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L ++ + + V +IS D TRK+L + IE+V + K ++C+SSQV Sbjct: 57 LAENCTFTALKPVCVRISQIDDTRKYLFELEDGNV-----IESVLMKYKHGNSVCISSQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC + L RNLT E+L Q+ + G+ ++SN+ Sbjct: 112 GCRMGCRFCASTLDGLERNLTPSEMLDQIYRIQRDTGE-----------------RVSNV 154 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 V+MG GEPL N+DN+ + + + + GL+ S+R +T+ST G VP I ++ EE + + LA+ Sbjct: 155 VVMGSGEPLDNYDNLIRFIRLLTGEGGLNISQRNVTVSTCGIVPGIRKLAEEDLQITLAL 214 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++++R L+P+ ++Y L ++DACR+Y + R+TFEY +++G+ND+ +A Sbjct: 215 SLHAPNDEVRRTLMPVAKRYGLNEVMDACRYYFEKTGR-RLTFEYSLVQGVNDNLDEAKA 273 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L++++K +NLIP NP EY+ S ++ I F +++SG + +R G DI A Sbjct: 274 LVRLIKDQHGHVNLIPVNPIKEREYVQSGRQAIEAFKNQLEKSGINVTVRREMGRDIDGA 333 Query: 362 CGQLKSLSKRIPKVP 376 CGQL+ + Sbjct: 334 CGQLRKSFIDKERKE 348 >gi|15924208|ref|NP_371742.1| radical SAM family protein [Staphylococcus aureus subsp. aureus Mu50] gi|15926801|ref|NP_374334.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus subsp. aureus N315] gi|49483381|ref|YP_040605.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus subsp. aureus MRSA252] gi|57651787|ref|YP_186093.1| hypothetical protein SACOL1230 [Staphylococcus aureus subsp. aureus COL] gi|87160347|ref|YP_493808.1| hypothetical protein SAUSA300_1111 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194924|ref|YP_499724.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267709|ref|YP_001246652.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus subsp. aureus JH9] gi|150393767|ref|YP_001316442.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus subsp. aureus JH1] gi|151221340|ref|YP_001332162.1| hypothetical protein NWMN_1128 [Staphylococcus aureus subsp. aureus str. Newman] gi|156979539|ref|YP_001441798.1| hypothetical protein SAHV_1208 [Staphylococcus aureus subsp. aureus Mu3] gi|161509390|ref|YP_001575049.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142008|ref|ZP_03566501.1| hypothetical protein SauraJ_10305 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253315576|ref|ZP_04838789.1| hypothetical protein SauraC_05407 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253731835|ref|ZP_04866000.1| Fe-S-cluster redox enzyme [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733544|ref|ZP_04867709.1| Fe-S-cluster redox enzyme [Staphylococcus aureus subsp. aureus TCH130] gi|255006005|ref|ZP_05144606.2| hypothetical protein SauraM_06030 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257425271|ref|ZP_05601696.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus 55/2053] gi|257427931|ref|ZP_05604329.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus 65-1322] gi|257430564|ref|ZP_05606946.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus subsp. aureus 68-397] gi|257433325|ref|ZP_05609683.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus subsp. aureus E1410] gi|257436167|ref|ZP_05612214.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus M876] gi|257795726|ref|ZP_05644705.1| cfr family radical SAM enzyme [Staphylococcus aureus A9781] gi|258415950|ref|ZP_05682220.1| ribosomal large subunit methyltransferase N [Staphylococcus aureus A9763] gi|258419697|ref|ZP_05682664.1| cfr family radical SAM enzyme [Staphylococcus aureus A9719] gi|258423739|ref|ZP_05686625.1| cfr family radical SAM enzyme [Staphylococcus aureus A9635] gi|258438739|ref|ZP_05689892.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus A9299] gi|258444555|ref|ZP_05692884.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus A8115] gi|258447612|ref|ZP_05695756.1| cfr family radical SAM enzyme [Staphylococcus aureus A6300] gi|258449454|ref|ZP_05697557.1| cfr family radical SAM enzyme [Staphylococcus aureus A6224] gi|258452515|ref|ZP_05700521.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus A5948] gi|258454833|ref|ZP_05702797.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus A5937] gi|262051850|ref|ZP_06024066.1| hypothetical protein SA930_1400 [Staphylococcus aureus 930918-3] gi|269202833|ref|YP_003282102.1| hypothetical protein SAAV_1190 [Staphylococcus aureus subsp. aureus ED98] gi|282892704|ref|ZP_06300939.1| cfr family radical SAM enzyme [Staphylococcus aureus A8117] gi|282903771|ref|ZP_06311659.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus C160] gi|282905535|ref|ZP_06313390.1| radical SAM enzyme Cfr family protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282908511|ref|ZP_06316341.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910790|ref|ZP_06318593.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus subsp. aureus WBG10049] gi|282913993|ref|ZP_06321780.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus M899] gi|282916467|ref|ZP_06324229.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus D139] gi|282918915|ref|ZP_06326650.1| radical SAM enzyme, Cfr family protein [Staphylococcus aureus subsp. aureus C427] gi|282920000|ref|ZP_06327729.1| cfr family radical SAM enzyme [Staphylococcus aureus A9765] gi|282924038|ref|ZP_06331714.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus C101] gi|282927558|ref|ZP_06335174.1| cfr family radical SAM enzyme [Staphylococcus aureus A10102] gi|283770279|ref|ZP_06343171.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus subsp. aureus H19] gi|283957959|ref|ZP_06375410.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus A017934/97] gi|284024142|ref|ZP_06378540.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus subsp. aureus 132] gi|293501026|ref|ZP_06666877.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus 58-424] gi|293509985|ref|ZP_06668693.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus M809] gi|293526573|ref|ZP_06671258.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus M1015] gi|294848211|ref|ZP_06788958.1| cfr family radical SAM enzyme [Staphylococcus aureus A9754] gi|295407156|ref|ZP_06816957.1| LOW QUALITY PROTEIN: cfr family radical SAM enzyme [Staphylococcus aureus A8819] gi|295427703|ref|ZP_06820335.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus EMRSA16] gi|296275239|ref|ZP_06857746.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus subsp. aureus MR1] gi|297245958|ref|ZP_06929817.1| cfr family radical SAM enzyme [Staphylococcus aureus A8796] gi|297591338|ref|ZP_06949976.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus MN8] gi|304381219|ref|ZP_07363872.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|81651279|sp|Q6GHL7|RLMN_STAAR RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|81694662|sp|Q5HGL4|RLMN_STAAC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|81705804|sp|Q7A600|RLMN_STAAN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|81781713|sp|Q99UQ0|RLMN_STAAM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123098046|sp|Q2FZ66|RLMN_STAA8 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123763308|sp|Q2FHM0|RLMN_STAA3 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829891|sp|A7X1H8|RLMN_STAA1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829892|sp|A6U137|RLMN_STAA2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829893|sp|A5ISA3|RLMN_STAA9 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829894|sp|A6QGB8|RLMN_STAAE RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829895|sp|A8Z3Q4|RLMN_STAAT RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|13701018|dbj|BAB42313.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] gi|14246988|dbj|BAB57380.1| similar to Fe-S-cluster redox enzyme [Staphylococcus aureus subsp. aureus Mu50] gi|49241510|emb|CAG40196.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MRSA252] gi|57285973|gb|AAW38067.1| conserved hypothetical protein TIGR00048 [Staphylococcus aureus subsp. aureus COL] gi|87126321|gb|ABD20835.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202482|gb|ABD30292.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740778|gb|ABQ49076.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus JH9] gi|149946219|gb|ABR52155.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus JH1] gi|150374140|dbj|BAF67400.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156721674|dbj|BAF78091.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|160368199|gb|ABX29170.1| possible Fe-S-cluster redox enzyme [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724434|gb|EES93163.1| Fe-S-cluster redox enzyme [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728598|gb|EES97327.1| Fe-S-cluster redox enzyme [Staphylococcus aureus subsp. aureus TCH130] gi|257271728|gb|EEV03866.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus 55/2053] gi|257274772|gb|EEV06259.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus 65-1322] gi|257278692|gb|EEV09311.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus subsp. aureus 68-397] gi|257281418|gb|EEV11555.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus subsp. aureus E1410] gi|257284449|gb|EEV14569.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus M876] gi|257789698|gb|EEV28038.1| cfr family radical SAM enzyme [Staphylococcus aureus A9781] gi|257839286|gb|EEV63760.1| ribosomal large subunit methyltransferase N [Staphylococcus aureus A9763] gi|257844282|gb|EEV68664.1| cfr family radical SAM enzyme [Staphylococcus aureus A9719] gi|257845971|gb|EEV69999.1| cfr family radical SAM enzyme [Staphylococcus aureus A9635] gi|257847998|gb|EEV71991.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus A9299] gi|257850048|gb|EEV74001.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus A8115] gi|257853803|gb|EEV76762.1| cfr family radical SAM enzyme [Staphylococcus aureus A6300] gi|257857442|gb|EEV80340.1| cfr family radical SAM enzyme [Staphylococcus aureus A6224] gi|257859733|gb|EEV82575.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus A5948] gi|257863216|gb|EEV85980.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus A5937] gi|259160251|gb|EEW45279.1| hypothetical protein SA930_1400 [Staphylococcus aureus 930918-3] gi|262075123|gb|ACY11096.1| hypothetical protein SAAV_1190 [Staphylococcus aureus subsp. aureus ED98] gi|269940710|emb|CBI49091.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus subsp. aureus TW20] gi|282314010|gb|EFB44402.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus C101] gi|282316725|gb|EFB47099.1| radical SAM enzyme, Cfr family protein [Staphylococcus aureus subsp. aureus C427] gi|282319907|gb|EFB50255.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus D139] gi|282322061|gb|EFB52385.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus M899] gi|282325395|gb|EFB55704.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus subsp. aureus WBG10049] gi|282327573|gb|EFB57856.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330827|gb|EFB60341.1| radical SAM enzyme Cfr family protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282590561|gb|EFB95638.1| cfr family radical SAM enzyme [Staphylococcus aureus A10102] gi|282594716|gb|EFB99700.1| cfr family radical SAM enzyme [Staphylococcus aureus A9765] gi|282595389|gb|EFC00353.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus C160] gi|282764701|gb|EFC04826.1| cfr family radical SAM enzyme [Staphylococcus aureus A8117] gi|283460426|gb|EFC07516.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus subsp. aureus H19] gi|283470430|emb|CAQ49641.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus ST398] gi|283790108|gb|EFC28925.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus A017934/97] gi|285816900|gb|ADC37387.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus 04-02981] gi|290920645|gb|EFD97708.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus M1015] gi|291096031|gb|EFE26292.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus 58-424] gi|291466929|gb|EFF09447.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus M809] gi|294825011|gb|EFG41433.1| cfr family radical SAM enzyme [Staphylococcus aureus A9754] gi|294968009|gb|EFG44037.1| LOW QUALITY PROTEIN: cfr family radical SAM enzyme [Staphylococcus aureus A8819] gi|295128061|gb|EFG57695.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus EMRSA16] gi|297177122|gb|EFH36376.1| cfr family radical SAM enzyme [Staphylococcus aureus A8796] gi|297576224|gb|EFH94940.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus MN8] gi|298694511|gb|ADI97733.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ED133] gi|302332822|gb|ADL23015.1| Ribosomal RNA large subunit methyltransferase N, Rlmn [Staphylococcus aureus subsp. aureus JKD6159] gi|302751041|gb|ADL65218.1| Ribosomal RNA large subunit methyltransferase N, Rlmn [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340202|gb|EFM06143.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312438405|gb|ADQ77476.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus TCH60] gi|312829612|emb|CBX34454.1| radical SAM superfamily protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315131009|gb|EFT86993.1| possible Fe-S-cluster redox enzyme [Staphylococcus aureus subsp. aureus CGS03] gi|315194104|gb|EFU24497.1| possible Fe-S-cluster redox enzyme [Staphylococcus aureus subsp. aureus CGS00] gi|315198455|gb|EFU28784.1| possible Fe-S-cluster redox enzyme [Staphylococcus aureus subsp. aureus CGS01] gi|320140967|gb|EFW32814.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus MRSA131] gi|320144318|gb|EFW36084.1| radical SAM enzyme, Cfr family [Staphylococcus aureus subsp. aureus MRSA177] gi|323442309|gb|EGA99939.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus O46] gi|329313887|gb|AEB88300.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus subsp. aureus T0131] gi|329724771|gb|EGG61276.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp. aureus 21189] gi|329727514|gb|EGG63970.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp. aureus 21172] gi|329728784|gb|EGG65205.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus aureus subsp. aureus 21193] Length = 364 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 125/370 (33%), Positives = 206/370 (55%), Gaps = 25/370 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K+S+ + +E++ L++ G + R QI++W+Y + + M+++S+++R LL Sbjct: 17 DKQSIYSLRFDEMQNWLVEQG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKDLRQLL 72 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +F++ V ++ S DGT K+L IETV + ++CV++QVGC Sbjct: 73 KDNFTVTTLTTVVKQESKDGTIKFLFELQD-----GYTIETVLMRHDYGNSVCVTTQVGC 127 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QVL + + + ++S IV+ Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQK--------------ALDATEERVSQIVI 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+D + L I +D L+ R IT+STSG +P I +E I + A+SL Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFADEDIQINFAVSL 233 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++R+ L+PINR Y +E LI+A ++Y +N R+TFEY + G+ND A L Sbjct: 234 HAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTNR-RVTFEYGLFGGVNDQLEHARELA 292 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++KG+ +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AACG Sbjct: 293 HLIKGLNCHVNLIPVNHVPERNYVKTAKNDIFKFEKELKRLGINATIRREQGSDIDAACG 352 Query: 364 QLKSLSKRIP 373 QL++ +++ Sbjct: 353 QLRAKERQVE 362 >gi|118444223|ref|YP_878314.1| ribosomal RNA large subunit methyltransferase N [Clostridium novyi NT] gi|205829738|sp|A0Q112|RLMN_CLONN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|118134679|gb|ABK61723.1| radical SAM enzyme, Cfr family [Clostridium novyi NT] Length = 343 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 144/367 (39%), Positives = 211/367 (57%), Gaps = 29/367 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++++ +EL++ + K + R QI++WIY + + +F MS+IS+ + L + Sbjct: 2 KNILNFTLDELKDWMDKN----SESKFRAKQIFQWIYKKAVFNFDDMSNISKSTKEKLKE 57 Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +F I P +V + +S DGT K+L + I IE+V + K ++CVS+Q+GC Sbjct: 58 NFYIQIPNVVKKYVSNIDGTEKFLFEYEDGNI-----IESVVMKYKHGNSICVSTQIGCR 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC + +VRNLT+ EI+ QVL A+ + D +ISN+V+M Sbjct: 113 MGCKFCASTVDGVVRNLTSGEIIAQVLKAQKEICD-----------------RISNVVLM 155 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G GEPL N+DNV K L + +D L+ +R ITLST G VP I + ++ + + LAISLH Sbjct: 156 GSGEPLDNYDNVIKFLKLINDEDALNIGQRHITLSTCGIVPKIKELADQKMQITLAISLH 215 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N++R ++PI KY LE L+DACR+Y +N RITFEY ++KG+NDS +A LIK Sbjct: 216 APNNEIRKSMMPIANKYTLEELLDACRYYYRTTNR-RITFEYALVKGVNDSRENAEELIK 274 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 I KG+ INLIP N Y S KDI F E + + G + IR G DI ACGQ Sbjct: 275 ISKGMLCHINLIPVNEIKENNYERSKSKDIEEFKETLIKHGIETTIRREMGSDINGACGQ 334 Query: 365 LKSLSKR 371 L+ R Sbjct: 335 LRRNYIR 341 >gi|220931837|ref|YP_002508745.1| radical SAM enzyme, Cfr family [Halothermothrix orenii H 168] gi|219993147|gb|ACL69750.1| radical SAM enzyme, Cfr family [Halothermothrix orenii H 168] Length = 349 Score = 428 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 148/363 (40%), Positives = 215/363 (59%), Gaps = 23/363 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 KE L + R+EL K G P R SQ++ WIY G+ +F M+++ +R L Sbjct: 4 KEDLKSLSRKELLMWFEKRGYPS----FRASQLFNWIYRNGVDEFSRMNNLPLVLREELE 59 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-SRGTLCVSSQVGC 124 + + +IV++ + DGT K+L IE+V+IP + SR ++C+SSQVGC Sbjct: 60 EKSYLTKLKIVNKSKAEDGTVKYLWELKD-----GETIESVFIPYEGSRNSVCISSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 SL C FC TG L+RNLT EI+ QVL + E ++SN+V Sbjct: 115 SLGCKFCATGLTGLIRNLTPGEIVDQVLQIQK-----------EISNDKYGSPRVSNVVF 163 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MGMGEPL N +V K++ I +DS GL+ KR+IT+STSG VP I + ++ + ++LAISL Sbjct: 164 MGMGEPLANMKSVLKAIEIMNDSKGLNIGKRKITVSTSGLVPQIKELADKKLQIVLAISL 223 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 +A +N LR+ L+PINRK+PLE L++A R+Y ++N R+TFEYV+LKG NDSP A L+ Sbjct: 224 NAPNNALRDKLMPINRKFPLEKLLEAVRYYTEVTNR-RVTFEYVLLKGTNDSPEHAFQLV 282 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +L I +NLIPFNP E+ ++ + F + + +G + +R RG I AACG Sbjct: 283 NLLSDIHGHVNLIPFNPVQETEFKRPSKETVNRFKDILINNGVETTVRQERGTRIEAACG 342 Query: 364 QLK 366 QL+ Sbjct: 343 QLR 345 >gi|319744504|gb|EFV96859.1| cfr family radical SAM enzyme [Streptococcus agalactiae ATCC 13813] Length = 374 Score = 428 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 134/380 (35%), Positives = 212/380 (55%), Gaps = 26/380 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+EL ++ G + R SQIW W+Y + ++ F M++IS++ LLN Sbjct: 17 KPSIYSLTRDELIAWAIEHG----EKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLN 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 73 ENFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 127 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI Q++L + + G ++S+IV+M Sbjct: 128 IGCTFCASGLIKKQRDLNNGEITAQIMLVQKYFDE------------RGQGERVSHIVVM 175 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+ NV K L +D GL+ R IT+STSG I E + V LA+SLH Sbjct: 176 GIGEPFDNYTNVLKFLRTVNDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 235 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +NDLR+ ++ INR +PLE L A +Y +N R+TFEY+ML G+ND+P +A L Sbjct: 236 APNNDLRSSIMRINRSFPLEKLFAAIEYYIETTNR-RVTFEYIMLNGVNDTPENAQELAD 294 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 + K I + +NLIP+NP + Y S ++ + F + +K++G + +R G DI AA Sbjct: 295 LTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYDVLKKNGVNCVVRQEHGTDIDAA 354 Query: 362 CGQLKSLSKRIPKVPRQEMQ 381 CGQL+S + + + + Q Sbjct: 355 CGQLRSNTMKRDRQKAKVGQ 374 >gi|288904758|ref|YP_003429979.1| hypothetical protein GALLO_0545 [Streptococcus gallolyticus UCN34] gi|306830757|ref|ZP_07463921.1| cfr family radical SAM enzyme [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977679|ref|YP_004287395.1| ribosomal RNA large subunit methyltransferase N [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288731483|emb|CBI13037.1| conserved hypothetical protein [Streptococcus gallolyticus UCN34] gi|304427104|gb|EFM30212.1| cfr family radical SAM enzyme [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177607|emb|CBZ47651.1| ribosomal RNA large subunit methyltransferase N [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 368 Score = 428 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 129/373 (34%), Positives = 213/373 (57%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ G+ R+EL E ++ G + R +QIW W+Y + ++ F+ M++IS++ +LN Sbjct: 9 KPSIYGLTRDELIEWAIEHG----EKKFRATQIWDWLYRKRVQSFEEMTNISKDFIAVLN 64 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++F + + + + DGT K+L P + IETV + + ++CV+SQVGC+ Sbjct: 65 ENFCVNPLKQRVVQEASDGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTSQVGCN 119 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + CSFC +G K R+LT+ EI Q+++ + + ++S++V+M Sbjct: 120 MGCSFCASGLIKKQRDLTSGEITSQIMMVQKYFDE------------RGQDERVSHVVVM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N++NV + L +D GL+ R IT+STSG I E + V LA+SLH Sbjct: 168 GIGEPFDNYNNVLRFLRTINDDNGLAIGARHITVSTSGLAHKIRDFAHESLQVNLAVSLH 227 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ +NR +PLE L A +Y +N R+TFEY+ML +ND P +A L Sbjct: 228 APNNELRSQIMRVNRSFPLEKLFAAIEYYVETTNR-RVTFEYIMLNEVNDFPENAQELAD 286 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 + K I + INLIP+NP + Y S ++ + F + +K++G + +R G DI AA Sbjct: 287 LTKKIRKLSYINLIPYNPVSEHDQYSRSSKERVAAFYDVLKKNGVNCVVRQEHGTDIDAA 346 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 347 CGQLRSNTMKRDR 359 >gi|82750822|ref|YP_416563.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus RF122] gi|123768547|sp|Q2YXJ8|RLMN_STAAB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|82656353|emb|CAI80771.1| conserved hypothetical protein [Staphylococcus aureus RF122] Length = 364 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 125/370 (33%), Positives = 206/370 (55%), Gaps = 25/370 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K+S+ + +E++ L++ G + R QI++W+Y + + M+++S+++R LL Sbjct: 17 DKQSIYSLRFDEMQNWLVEQG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKDLRQLL 72 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +F++ V ++ S DGT K+L IETV + ++CV++QVGC Sbjct: 73 KDNFTVTTLTTVVKQESKDGTIKFLFELQD-----GYTIETVLMRHDYGNSVCVTTQVGC 127 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QVL + + + ++S IV+ Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQK--------------ALDATEERVSQIVI 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+D + L I +D L+ R IT+STSG +P I +E I + A+SL Sbjct: 174 MGIGEPFENYDEMMGFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFADEDIQINFAVSL 233 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++R+ L+PINR Y +E LI+A ++Y +N R+TFEY + G+ND A L Sbjct: 234 HAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTNR-RVTFEYGLFGGVNDQLEHARELA 292 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++KG+ +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AACG Sbjct: 293 HLIKGLNCHVNLIPVNHVPERNYVKTAKNDIFKFEKELKRLGINATIRREQGSDIDAACG 352 Query: 364 QLKSLSKRIP 373 QL++ +++ Sbjct: 353 QLRAKERQVE 362 >gi|77408383|ref|ZP_00785123.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae COH1] gi|77172986|gb|EAO76115.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae COH1] Length = 368 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 132/377 (35%), Positives = 211/377 (55%), Gaps = 26/377 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+EL ++ G + R SQIW W+Y + ++ F M++IS++ LLN Sbjct: 11 KPSIYSLTRDELIAWAIEHG----EKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLN 66 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 67 ENFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQYYGLSVCVTTQVGCN 121 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI Q++L + + G ++S+IV+M Sbjct: 122 IGCTFCASGLIKKQRDLNNGEITAQIMLVQKYFDE------------RGQGERVSHIVVM 169 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+ NV K L +D GL+ R IT+STSG I E + V LA+SLH Sbjct: 170 GIGEPFDNYTNVLKFLRTVNDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 229 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ INR +PLE L A +Y +N R+TFEY+ML G+ND+P +A L Sbjct: 230 APNNELRSSIMRINRSFPLEKLFAAIEYYIETTNR-RVTFEYIMLNGVNDTPENAQELAD 288 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 + K I + +NLIP+NP + Y S ++ + F + +K++G + +R G DI AA Sbjct: 289 LTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYDVLKKNGVNCVVRQEHGTDIDAA 348 Query: 362 CGQLKSLSKRIPKVPRQ 378 CGQL+S + + + + Sbjct: 349 CGQLRSNTMKRDRQKAK 365 >gi|25010575|ref|NP_734970.1| ribosomal RNA large subunit methyltransferase N [Streptococcus agalactiae NEM316] gi|77413558|ref|ZP_00789746.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae 515] gi|81588871|sp|Q8E6Q7|RLMN_STRA3 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|23094928|emb|CAD46149.1| Unknown [Streptococcus agalactiae NEM316] gi|77160387|gb|EAO71510.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae 515] Length = 368 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 132/377 (35%), Positives = 211/377 (55%), Gaps = 26/377 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+EL ++ G + R SQIW W+Y + ++ F M++IS++ LLN Sbjct: 11 KPSIYSLTRDELIAWAIEHG----EKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLN 66 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 67 ENFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQYYGLSVCVTTQVGCN 121 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI Q++L + + G ++S+IV+M Sbjct: 122 IGCTFCASGLIKKQRDLNNGEITAQIMLVQKYFDE------------RGQGERVSHIVVM 169 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+ NV K L +D GL+ R IT+STSG I E + V LA+SLH Sbjct: 170 GIGEPFDNYTNVLKFLRTVNDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 229 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ INR +PLE L A +Y +N R+TFEY+ML G+ND+P +A L Sbjct: 230 APNNELRSSIMRINRSFPLEKLFAAIEYYIETTNR-RVTFEYIMLNGVNDTPENAQELAD 288 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 + K I + +NLIP+NP + Y S ++ + F + +K++G + +R G DI AA Sbjct: 289 LTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYDVLKKNGVNCVVRQEHGTDIDAA 348 Query: 362 CGQLKSLSKRIPKVPRQ 378 CGQL+S + + + + Sbjct: 349 CGQLRSNTMKRDRQKAK 365 >gi|297208138|ref|ZP_06924569.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus ATCC 51811] gi|296887381|gb|EFH26283.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus ATCC 51811] Length = 364 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 126/370 (34%), Positives = 207/370 (55%), Gaps = 25/370 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K+S+ + +E++ L++ G + R QI++W+Y + + M+++S+++R LL Sbjct: 17 DKQSIYSLRFDEMQNWLVEQG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKDLRQLL 72 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +F++ V ++ S DGT K+L IETV + ++CV++QVGC Sbjct: 73 KDNFTVTTLTTVVKQESKDGTIKFLFELQD-----GYTIETVLMRHDYGNSVCVTTQVGC 127 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QVL + + + ++S IV+ Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQK--------------ALDATEERVSQIVI 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+D + L I +D L+ R IT+STSG +P I +E I + A+SL Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFADEDIQINFAVSL 233 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++R+ L+PINR Y +E LI+A ++Y +N R+TFEY + G+ND A L Sbjct: 234 HAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTNR-RVTFEYGLFGGVNDQLEHARELA 292 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++KG+ +NLIP N P Y+ + + DI F + +KR G ++ IR +GLDI AACG Sbjct: 293 HLIKGLNCHVNLIPVNHVPERNYVKTAKNDIFKFEKELKRLGINATIRREQGLDIDAACG 352 Query: 364 QLKSLSKRIP 373 QL++ +++ Sbjct: 353 QLRAKERQVE 362 >gi|171778734|ref|ZP_02919830.1| hypothetical protein STRINF_00682 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282691|gb|EDT48115.1| hypothetical protein STRINF_00682 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 366 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 129/373 (34%), Positives = 215/373 (57%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ G+ R+EL E +++ G + R +QIW W+Y + ++ F+ M++IS++ +LN Sbjct: 9 KPSIYGLTRDELIEWVIEHG----EKKFRATQIWDWLYRKRVQSFEEMTNISKDFIAILN 64 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++F + + + + DGT K+L P + IETV + + ++CV+SQVGC+ Sbjct: 65 ENFCVNPLKQRVVQEASDGTVKYLFELPDSML-----IETVLMRQHYGLSVCVTSQVGCN 119 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + CSFC +G K R+LT+ EI Q+++ + + ++S++V+M Sbjct: 120 IGCSFCASGLIKKQRDLTSGEITSQIMMVQKYFDE------------RGQDERVSHVVVM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+DNV + + ++ GL+ R IT+STSG I E + V LA+SLH Sbjct: 168 GIGEPFDNYDNVLRFVRTINNDNGLAIGARHITISTSGLAHKIREFAHESLQVNLAVSLH 227 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ +NR +PLE L A +Y +N R+TFEY+ML +NDSP +A L Sbjct: 228 APNNELRSQIMRVNRSFPLEKLFTAIEYYIETTNR-RVTFEYIMLNDVNDSPENAQELAD 286 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 + K I + INLIP+NP + Y S ++ + F + +K++G + +R G DI AA Sbjct: 287 LTKKIRKLSYINLIPYNPVSEHDQYRRSSKEHVAAFYDVLKKNGVNCVVRQEHGTDIDAA 346 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 347 CGQLRSNTMKRDR 359 >gi|158320465|ref|YP_001512972.1| radical SAM protein [Alkaliphilus oremlandii OhILAs] gi|205829712|sp|A8MH89|RLMN_ALKOO RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|158140664|gb|ABW18976.1| radical SAM enzyme, Cfr family [Alkaliphilus oremlandii OhILAs] Length = 343 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 134/368 (36%), Positives = 203/368 (55%), Gaps = 30/368 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K L+ + +E+EE L +G + R QI++W+ +G++ F M+++S+ +R Sbjct: 1 MEKIDLLSLTLKEIEEILTNMG----EKKFRGKQIFQWV-NKGVKTFDEMTNLSKNLRDQ 55 Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L + I +I + IS DGT K+L I IE V + T C+S+QV Sbjct: 56 LAERTYITNIKIEKKLISSIDGTIKYLFLLEDCNI-----IEGVVMKYHHGLTACISTQV 110 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC++ C+FC + LVRNL A E++ Q+L + G+ +ISNI Sbjct: 111 GCAMGCTFCASTLDGLVRNLRAGEMIDQILTMQEDTGE-----------------RISNI 153 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241 V+MG GEPL N+D L I +D GL+ R ITLSTSG VP I + + +I + LAI Sbjct: 154 VLMGSGEPLHNYDETINFLKIINDENGLNIGNRHITLSTSGLVPQIKTLADLKIPINLAI 213 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA +++LR +P+ +KY ++ LID+CR+Y + RITFEY ++KG+ND +DA Sbjct: 214 SLHAPNDELRQQTMPVAKKYAIDELIDSCRYYIEKTGR-RITFEYALIKGVNDRDKDARE 272 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L +LKG+ +NLIP N Y + I F +K++G + +R G DI AA Sbjct: 273 LGDLLKGMLCHVNLIPVNNVDERGYKKPSIESIHQFQNTLKKAGIETTVRREMGADINAA 332 Query: 362 CGQLKSLS 369 CGQL+ Sbjct: 333 CGQLRRKH 340 >gi|254479559|ref|ZP_05092874.1| radical SAM enzyme, Cfr family [Carboxydibrachium pacificum DSM 12653] gi|214034497|gb|EEB75256.1| radical SAM enzyme, Cfr family [Carboxydibrachium pacificum DSM 12653] Length = 336 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 142/362 (39%), Positives = 203/362 (56%), Gaps = 30/362 (8%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 M EE+EE + +G + R Q++KWIY + + DF M+DIS+ +R L + I Sbjct: 1 MTLEEMEEFFVNLG----ESKFRAKQLYKWIYDKRVTDFDLMTDISKNLRAKLKEIAYIS 56 Query: 72 YPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130 +I++ ++S D T K+L + I IE V I K T CVS+QVGC++ C F Sbjct: 57 ELKIIERRVSQIDDTVKYLFLLEDKNI-----IEGVAIKYKFGNTACVSTQVGCNMKCKF 111 Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 C + VR+L A E++ QV+ S G KISNIV+MG GEP Sbjct: 112 CASAIGGKVRDLKASEMVDQVMAIDSDYG------------------KISNIVLMGSGEP 153 Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSND 249 N+D V K + I ++ GL KR IT+ST G VP I + EE+ V L+ISLHA +N+ Sbjct: 154 FDNYDEVMKFIKIVNNPYGLKIGKRHITISTVGIVPKIYQFADEELQVNLSISLHAPNNE 213 Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309 LRN L+PINR YPLE L+ ACR+Y +N RITFEY ++ G+ND A L+ +LKG+ Sbjct: 214 LRNELMPINRAYPLEELMKACRYYIEKTNR-RITFEYALIDGVNDKKEHAYQLVDLLKGM 272 Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369 +NLIP N + S+ + ++ F + I+ +G + +R G DI AACGQL+ Sbjct: 273 LCHVNLIPINYVKEIGFRKSNNEKVMMFKKIIENAGITCTVRRELGSDIEAACGQLRRKY 332 Query: 370 KR 371 + Sbjct: 333 LK 334 >gi|293374997|ref|ZP_06621292.1| radical SAM enzyme, Cfr family [Turicibacter sanguinis PC909] gi|325843362|ref|ZP_08167945.1| 23S rRNA m2A2503 methyltransferase [Turicibacter sp. HGF1] gi|292646407|gb|EFF64422.1| radical SAM enzyme, Cfr family [Turicibacter sanguinis PC909] gi|325489391|gb|EGC91764.1| 23S rRNA m2A2503 methyltransferase [Turicibacter sp. HGF1] Length = 347 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 119/367 (32%), Positives = 203/367 (55%), Gaps = 25/367 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K+S+ + ++ + L + Q+ + R +QI+ W++ + + MS++ ++++ L Sbjct: 1 MEKKSIYSLDIQDWQNWLQE----QKQPKFRANQIFDWLFKKRVTSIDEMSNLPKDLKGL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + + F + + ++++ DGT K+L + IETV + K ++CV++QVG Sbjct: 57 MQESFDVTTLKERKKQVASDGTTKFLFELSDGDL-----IETVLMRHKYGCSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC + L RNL A EI+ QVL + L + ++S+IV Sbjct: 112 CRIGCKFCASTLSGLKRNLQAGEIVAQVLRVQQYLDE--------------SQERVSHIV 157 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N++N+ K + I + GL+ R IT+STSG VP I ++ V A+S Sbjct: 158 VMGIGEPFENYENLTKFIEIINSEKGLNIGSRHITVSTSGIVPKIYNFADQHPQVSFAVS 217 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +++LR L+PINR YPLE L++A ++Y +N RITFEY ++K +ND+ A L Sbjct: 218 LHAPTDELRTQLMPINRAYPLEKLMEAVKYYIKQTNR-RITFEYGLIKNVNDTVECANQL 276 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++ + INLIP N P + + + I F + +K+ G + +R G DI AAC Sbjct: 277 ADLVGRLNCHINLIPVNYVPERGFDRTPIEHIEKFEQTLKKRGVNVTVRRELGSDIDAAC 336 Query: 363 GQLKSLS 369 GQL++ Sbjct: 337 GQLRAKE 343 >gi|121607087|ref|YP_994894.1| radical SAM protein [Verminephrobacter eiseniae EF01-2] gi|205829923|sp|A1WE19|RLMN_VEREI RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|121551727|gb|ABM55876.1| radical SAM enzyme, Cfr family [Verminephrobacter eiseniae EF01-2] Length = 391 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 150/383 (39%), Positives = 213/383 (55%), Gaps = 22/383 (5%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + +L+ R+ L + ++G R R +Q+++WI+ RG DF MSD+++ +R Sbjct: 1 MSTTNLLEFDRDGLADFCARLG----EKRFRATQLFRWIHQRGASDFDAMSDLARALRDK 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L + P ++ + S DG+ KWL +G +E V+IPE RGTLCVSSQ G Sbjct: 57 LKGCARVQAPPVISGQASADGSVKWLF-----DVGAGNAVEAVFIPEDERGTLCVSSQAG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C FC TG Q RNL++ EI+ Q+ A L ED R ISN+V Sbjct: 112 CAVGCRFCSTGHQGFSRNLSSGEIIAQLWFAEHALRRRLKTED----------RVISNLV 161 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N + +L + D G S+RR+T+STSG VP I R+ + V LA+SL Sbjct: 162 MMGMGEPLQNLAALLPALRVMLDDHGYGLSRRRVTVSTSGVVPMIDRLARDCPVALAVSL 221 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA ++ LR+ LVP+NRKYP++ L+ AC+ Y + ITFEY ML G+ND A L+ Sbjct: 222 HAPNDALRDQLVPLNRKYPIDELLQACKRYLAHAPRDFITFEYCMLDGVNDQIGHARQLV 281 Query: 304 KILKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +++ I K NLIPFNP+P L S I+ F++ + +G + +R RG DI AA Sbjct: 282 ELVGRAAIRCKFNLIPFNPFPASGLLRSAHDQILAFAQVLGAAGIVTTVRKTRGDDIAAA 341 Query: 362 CGQLKSLSK-RIPKVPRQEMQIT 383 CGQL + R R Q T Sbjct: 342 CGQLAGDVRDRTRVAERMAKQRT 364 >gi|295696043|ref|YP_003589281.1| radical SAM enzyme, Cfr family [Bacillus tusciae DSM 2912] gi|295411645|gb|ADG06137.1| radical SAM enzyme, Cfr family [Bacillus tusciae DSM 2912] Length = 360 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 125/363 (34%), Positives = 201/363 (55%), Gaps = 26/363 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L G+ EL L + G P R +Q++ W+Y + + M+++ + +R++L + Sbjct: 15 IHLYGLTLAELRTWLEEQGEPG----YRAAQLFDWMYKKRVTSVDAMTNLPKALRNVLRE 70 Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + E + ++S DGT K+L R +ETV + ++CVSSQVGC Sbjct: 71 RARLGTMEELTRQVSKKDGTTKFLFRLFD-----GATVETVLMRHSYGHSVCVSSQVGCH 125 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC + LVRNL A E++ QVL + +L G+++S++V+M Sbjct: 126 MGCQFCASTLGGLVRNLEAGEMVEQVLACQRMLDQ--------------QGQRVSSVVVM 171 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G GEPL N+ + + + + GL +R IT+STSG VP I ++ EE + + LA+SLH Sbjct: 172 GSGEPLENYGATLRFIRLITADEGLRIGQRHITVSTSGMVPAIRKLAEERLQITLAVSLH 231 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++++R+ L+PINR YP+ +L++ACR Y + R+TFEY ++ GIND A L Sbjct: 232 ASNDEVRSRLMPINRAYPIAVLLEACREYWEKTGR-RLTFEYALIGGINDRLDQADELAD 290 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 L+G+P +NLIP N P + + ++ + F E ++R G S +R G DI AACGQ Sbjct: 291 RLRGLPCHVNLIPVNYVPERRFDRTPRRQVEAFRERLERHGISCTVRREMGADIAAACGQ 350 Query: 365 LKS 367 L++ Sbjct: 351 LRA 353 >gi|262048118|ref|ZP_06021005.1| hypothetical protein SAD30_1894 [Staphylococcus aureus D30] gi|259163684|gb|EEW48239.1| hypothetical protein SAD30_1894 [Staphylococcus aureus D30] Length = 364 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 125/370 (33%), Positives = 205/370 (55%), Gaps = 25/370 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K+S+ + +E++ L++ G + R QI++W+Y + + M+++S+++R LL Sbjct: 17 DKQSIYSLRFDEMQNWLVEQG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKDLRQLL 72 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +F++ V ++ S DGT K+L IETV + ++CV++QVGC Sbjct: 73 KDNFTVTTLTTVVKQESKDGTIKFLFELQD-----GYTIETVLMRHDYGNSVCVTTQVGC 127 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QVL + + + ++S IV+ Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQK--------------ALDATEERVSQIVI 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+D + L I +D L+ R IT+STSG +P I +E I + A+SL Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFADEDIQINFAVSL 233 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++R+ L+PINR Y +E LI+A ++Y +N R+TFEY + G+ND A L Sbjct: 234 HAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTNR-RVTFEYGLFGGVNDQLEHARELA 292 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++KG+ +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AACG Sbjct: 293 HLIKGLNCHVNLIPVNHVPERNYVKTAKNDIFKFEKELKRLGINATIRREQGSDIDAACG 352 Query: 364 QLKSLSKRIP 373 QL+ +++ Sbjct: 353 QLRVKERQVE 362 >gi|126649673|ref|ZP_01721909.1| Radical SAM family enzyme [Bacillus sp. B14905] gi|126593392|gb|EAZ87337.1| Radical SAM family enzyme [Bacillus sp. B14905] Length = 380 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 125/366 (34%), Positives = 204/366 (55%), Gaps = 25/366 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 KES+ +LEE L + G R +QI+ W+Y + ++ F+ MS++S+ +R L Sbjct: 34 KESIYSFQPHQLEEWLKENG----EKPFRAAQIFDWLYNKRVKTFEEMSNLSKGLRDKLA 89 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +F++ + ++ S DGT K+L + IETV + + ++CV++QVGC Sbjct: 90 ANFALSTLSTIIKQESKDGTIKFLFQLQD-----GYSIETVLMRHEYGNSVCVTTQVGCR 144 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC + L R+L A EI+ QV+ + L + V ++S+IV+M Sbjct: 145 IGCTFCASTLGGLKRHLLAGEIVEQVVKVQQTLDE--------------VSERVSHIVIM 190 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+D + L + + GL+ R IT+STSG VP I + +E + + A+SLH Sbjct: 191 GIGEPFDNYDAMMNFLKVINHEKGLNIGARHITVSTSGIVPKIYQFADEQLQINFAVSLH 250 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A + + R L+PI R Y LE L++A R+Y + R++FEY ++ G NDS A L Sbjct: 251 APNQEARQKLMPIARAYKLEELMEAVRYYTKKTGR-RVSFEYGLMSGENDSVEIAEELSA 309 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 ++KGI +NLIP N P +Y+ + + I F + +K++G + IR +G DI AACGQ Sbjct: 310 LIKGIKCHVNLIPVNYVPERDYVRTSRSQIFAFEKTLKKNGINVTIRREQGSDIAAACGQ 369 Query: 365 LKSLSK 370 L++ + Sbjct: 370 LRAQER 375 >gi|291549489|emb|CBL25751.1| 23S rRNA m(2)A-2503 methyltransferase [Ruminococcus torques L2-14] Length = 346 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 117/365 (32%), Positives = 202/365 (55%), Gaps = 29/365 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ + EEL++ + IG R QI++W++V+ + F M+++S+ +R L Sbjct: 2 KKDIRAYGYEELQKEMATIG----EKAFRAKQIYEWLHVKLVDHFDEMTNLSKALREKLE 57 Query: 66 QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +++ I+ +++ +IS DGT K+L R + +E+V + K ++C+SSQVGC Sbjct: 58 ENYEILPVVMLERQISQIDGTNKFLFRLYDGNV-----VESVLMKYKHGNSVCISSQVGC 112 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + LVRNL+ E+L Q+ + + G+ ++SN+V+ Sbjct: 113 RMGCAFCASTIGGLVRNLSPSEMLGQIYQIQKISGE-----------------RVSNVVI 155 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISL 243 MG GEP+ N+DN K + + +D GL+ S+R +T+ST G VP + + E + + LA+SL Sbjct: 156 MGTGEPMDNYDNFLKFIHLLTDEHGLNISQRNVTVSTCGIVPKMKELAKEHLQITLALSL 215 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H + + R L+P+ KY + ++ AC Y + R++FEY ++ G+ND+ DA LI Sbjct: 216 HGSNQEKRRKLMPVANKYDITEVLAACDEYFKETGR-RVSFEYSLVHGVNDTDEDAQELI 274 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +L+ INLIP NP +++ +K + F +++SG + IR G DI ACG Sbjct: 275 HLLRHKNCHINLIPVNPVKERDFVRPSRKSALNFKNKLEKSGINVTIRREMGSDIDGACG 334 Query: 364 QLKSL 368 QL+ Sbjct: 335 QLRRR 339 >gi|21282830|ref|NP_645918.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus subsp. aureus MW2] gi|49486057|ref|YP_043278.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus aureus subsp. aureus MSSA476] gi|300912218|ref|ZP_07129661.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus TCH70] gi|81649432|sp|Q6G9Z5|RLMN_STAAS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|81762575|sp|Q8NX16|RLMN_STAAW RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|21204269|dbj|BAB94966.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] gi|49244500|emb|CAG42929.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MSSA476] gi|300886464|gb|EFK81666.1| cfr family radical SAM enzyme [Staphylococcus aureus subsp. aureus TCH70] Length = 364 Score = 426 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 125/370 (33%), Positives = 206/370 (55%), Gaps = 25/370 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K+S+ + +E++ L++ G + R QI++W+Y + + M+++S+++R LL Sbjct: 17 DKQSIYSLRFDEMQNWLVEQG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKDLRQLL 72 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +F++ V ++ S DGT K+L IETV + ++CV++QVGC Sbjct: 73 KDNFTVTTLTTVVKQESKDGTIKFLYELQD-----GYTIETVLMRHDYGNSVCVTTQVGC 127 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QVL + + + ++S IV+ Sbjct: 128 RIGCTFCASTLGGLKRNLEAGEIVSQVLTVQK--------------ALDATEERVSQIVI 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEP N+D + L I +D L+ R IT+STSG +P I +E I + A+SL Sbjct: 174 MGIGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFADEDIQINFAVSL 233 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++R+ L+PINR Y +E LI+A ++Y +N R+TFEY + G+ND A L Sbjct: 234 HAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTNR-RVTFEYGLFGGVNDQLEHARELA 292 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++KG+ +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AACG Sbjct: 293 HLIKGLNCHVNLIPVNHVPERNYVKTAKNDIFKFEKELKRLGINATIRREQGSDIDAACG 352 Query: 364 QLKSLSKRIP 373 QL++ +++ Sbjct: 353 QLRAKERQVE 362 >gi|222153431|ref|YP_002562608.1| ribosomal RNA large subunit methyltransferase N [Streptococcus uberis 0140J] gi|254807218|sp|B9DUW7|RLMN_STRU0 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|222114244|emb|CAR42840.1| radical SAM superfamily protein [Streptococcus uberis 0140J] Length = 361 Score = 426 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 130/373 (34%), Positives = 207/373 (55%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+EL L+ G + R +QIW W+Y + ++ F+ M++IS++ LLN Sbjct: 2 KPSIYSLTRDELIAWALENG----QKKFRATQIWDWLYKKRVQSFEEMTNISKDFIALLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +HF + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 EHFCVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI Q++L + + ++S++V+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEITAQIMLVQKYFDE------------RGQDERVSHVVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+DNV K L +D GL+ R IT+STSG I E + V LA+SLH Sbjct: 161 GIGEPFDNYDNVMKFLRTINDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ INR +PLE L A +Y +N R+TFEY+ML +ND A L Sbjct: 221 APNNELRSSIMRINRSFPLEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAQELAD 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 + K I + +NLIP+NP + Y S ++ + F + +K++G + +R G DI AA Sbjct: 280 LTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVAAFYDVLKKNGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKKDR 352 >gi|325568408|ref|ZP_08144775.1| cfr family radical SAM enzyme [Enterococcus casseliflavus ATCC 12755] gi|325158177|gb|EGC70330.1| cfr family radical SAM enzyme [Enterococcus casseliflavus ATCC 12755] Length = 361 Score = 426 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 129/382 (33%), Positives = 213/382 (55%), Gaps = 28/382 (7%) Query: 1 MNFLKKES--LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQ 58 M KK + + G+ + +L + + Q + R +Q+W+W+Y + + F+ M+++ + Sbjct: 1 MKRGKKVNPSIYGLTKSDLSLWITE----QNEKKFRANQVWEWLYEKRVTSFEEMTNLPK 56 Query: 59 EVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118 + L+ F I + + + + DGT K+L + P + IETV + ++ ++CV Sbjct: 57 PLIEKLSAAFVINPLKQMVVQEASDGTVKYLFQLPDNHM-----IETVLMRQEYGMSVCV 111 Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 ++QVGC++ C+FC +G K R+LTA EI+ Q++L + + + G + Sbjct: 112 TTQVGCNIGCTFCASGLLKKQRDLTAGEIVAQIMLVQHYFDE------------RNEGER 159 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGV 237 +S++V+MG+GEP N+DNV L I +D GL+ R IT+STSG I E + V Sbjct: 160 VSHVVVMGIGEPFDNYDNVMHFLQIINDPKGLAIGARHITVSTSGLAHKIKEFAENGLQV 219 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 LAISLHA +N++R ++ INR +P+E L+ A +Y +N RITFEY+ML +ND P Sbjct: 220 NLAISLHAPNNEVRTSMMRINRSFPIEKLMAAVDYYLEKTNR-RITFEYIMLDHVNDRPE 278 Query: 298 DALNLIKILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 A L +LK + +NLIP+NP + Y S + D++ F + +K++G + IR Sbjct: 279 HARQLAALLKDKKKLSYVNLIPYNPVSEHDQYARSKKADVLAFYDILKKNGINCVIRKEH 338 Query: 355 GLDILAACGQLKSLSKRIPKVP 376 G DI AACGQL+S + Sbjct: 339 GTDIDAACGQLRSKQMKKEASA 360 >gi|146283364|ref|YP_001173517.1| radical SAM protein [Pseudomonas stutzeri A1501] gi|145571569|gb|ABP80675.1| radical SAM enzyme, Cfr family [Pseudomonas stutzeri A1501] Length = 347 Score = 426 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 159/341 (46%), Positives = 205/341 (60%), Gaps = 17/341 (4%) Query: 39 WKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIG 98 KWI+ G+ DF MS++ + +R L I PEIV E IS DGTRKW++R + Sbjct: 1 MKWIHHFGVDDFDAMSNLGKALREKLKACAEIRGPEIVSEDISSDGTRKWVVR-----VA 55 Query: 99 GPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLL 158 +ETVYIP+ RGTLCVSSQ GC+L CSFC TG Q NLTA E++ QV +A Sbjct: 56 SGSCVETVYIPQGGRGTLCVSSQAGCALDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSF 115 Query: 159 GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRIT 218 G P D R I+N+VMMGMGEPL NFDNV ++ I D +G SKR++T Sbjct: 116 GTVPAKID----------RAITNVVMMGMGEPLLNFDNVVAAMQIMMDDLGYGISKRKVT 165 Query: 219 LSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN 278 LSTSG VP I + + I V LA+SLHA + LR+ LVPIN+KYPL++L+ AC+ Y Sbjct: 166 LSTSGVVPMIDELAKVIDVSLALSLHAPNEALRDQLVPINKKYPLDVLLAACKRYVSRLG 225 Query: 279 ARRI-TFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTF 337 +R+ T EY +LKG+ND P A +I +L IP KINLIPFNP+P Y I F Sbjct: 226 EKRVLTIEYTLLKGVNDQPEHAEQMIALLADIPCKINLIPFNPFPHSGYERPSNNAIRRF 285 Query: 338 SECIKRSGYSSPIRTPRGLDILAACGQLKSLS-KRIPKVPR 377 + + + G++ +RT RG DI AACGQL R + R Sbjct: 286 QDILHKGGHNVTVRTTRGEDIDAACGQLVGQVLDRTRRSER 326 >gi|51892489|ref|YP_075180.1| hypothetical protein STH1351 [Symbiobacterium thermophilum IAM 14863] gi|81610561|sp|Q67PQ7|RLMN_SYMTH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|51856178|dbj|BAD40336.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM 14863] Length = 371 Score = 426 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 126/369 (34%), Positives = 211/369 (57%), Gaps = 28/369 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 ++ L GM EE+ + + +G P R R Q+++W+Y +G++DF M+++ +R L Sbjct: 23 RQPLPGMSLEEMADLMADLGEP----RFRAKQLFQWVYQKGVKDFDAMTNLPARLRQHLA 78 Query: 66 QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + E E+ GT K+L R ++E+V + + ++CV++QVGC Sbjct: 79 GTTMLRLLEKETEQHDRRTGTTKYLFRL-----ADGSQVESVLMRQSWGNSVCVTTQVGC 133 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + LVRNLTA EI+ Q+++ + L G +IS +V+ Sbjct: 134 RMGCTFCASTVGGLVRNLTAGEIVDQIVMMQRELPQ---------------GERISTVVL 178 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG GEPL N+D+V K++ + D GL+ R IT+STSG VP + R+ EE + + LA+SL Sbjct: 179 MGSGEPLENYDHVLKAVRLVHDPEGLNIGYRHITISTSGIVPGMRRLAEEGLPITLALSL 238 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++LR L+P+ R +PL ++ A R Y + R+T+EY++++G+ND P +A L Sbjct: 239 HAPTDELRRQLMPVARIWPLAEVLAAAREYGEKTGR-RVTYEYILIEGVNDGPEEARQLA 297 Query: 304 KILKGIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LKG A +NLIP NP Y + + F E ++ +G ++ +R G +I AAC Sbjct: 298 RLLKGALAHVNLIPMNPVAERPQYRRPGPERVNRFKEILESNGIATTVRREMGGEIDAAC 357 Query: 363 GQLKSLSKR 371 GQL++ ++R Sbjct: 358 GQLRNRAQR 366 >gi|168186788|ref|ZP_02621423.1| radical SAM enzyme, Cfr family [Clostridium botulinum C str. Eklund] gi|169295142|gb|EDS77275.1| radical SAM enzyme, Cfr family [Clostridium botulinum C str. Eklund] Length = 343 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 139/367 (37%), Positives = 207/367 (56%), Gaps = 29/367 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++++ +EL++ + G + R QI++WIY + + +F M++IS+ + L + Sbjct: 2 KNILDFTLDELKDWMDTNG----ESKFRAKQIFQWIYKKAVFNFDDMTNISKGTKEKLKE 57 Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +F I P ++ + S DGT K+L + I IE+V + K ++CVS+Q+GC Sbjct: 58 NFCIQIPNVIKKYKSNIDGTEKFLFEYEDGNI-----IESVVMKYKHGNSICVSTQIGCR 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC + +VRNLT+ EI+ QVL A+ + D +ISN+V+M Sbjct: 113 MGCKFCASTVDGVVRNLTSGEIIAQVLKAQKEIDD-----------------RISNVVLM 155 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G GEPL N+DNV K L + + L +R ITLST G VP I + +E + + LAISLH Sbjct: 156 GSGEPLDNYDNVLKFLKLINHDDTLKIGQRHITLSTCGVVPKIKELADEKMQITLAISLH 215 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N++R ++PI KY L+ L++ CR+Y +N RITFEY ++KG+NDS +A LIK Sbjct: 216 APNNEIRKSMMPIASKYTLDELLETCRYYYITTNR-RITFEYALVKGVNDSRENAEELIK 274 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 LKG+ INLIP N Y S KDI F E + + G + IR G DI ACGQ Sbjct: 275 KLKGMLCHINLIPVNEIKENNYERSKSKDIEEFKETLIKYGIETTIRREMGSDINGACGQ 334 Query: 365 LKSLSKR 371 L+ R Sbjct: 335 LRRNYIR 341 >gi|257867066|ref|ZP_05646719.1| ribosomal RNA large subunit methyltransferase N [Enterococcus casseliflavus EC30] gi|257873401|ref|ZP_05653054.1| ribosomal RNA large subunit methyltransferase N [Enterococcus casseliflavus EC10] gi|257877144|ref|ZP_05656797.1| ribosomal RNA large subunit methyltransferase N [Enterococcus casseliflavus EC20] gi|257801122|gb|EEV30052.1| ribosomal RNA large subunit methyltransferase N [Enterococcus casseliflavus EC30] gi|257807565|gb|EEV36387.1| ribosomal RNA large subunit methyltransferase N [Enterococcus casseliflavus EC10] gi|257811310|gb|EEV40130.1| ribosomal RNA large subunit methyltransferase N [Enterococcus casseliflavus EC20] Length = 361 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 129/382 (33%), Positives = 213/382 (55%), Gaps = 28/382 (7%) Query: 1 MNFLKKES--LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQ 58 M KK + + G+ + +L + + Q + R +Q+W+W+Y + + F+ M+++ + Sbjct: 1 MKRGKKVNPSIYGLTKSDLSLWITE----QNEKKFRANQVWEWLYEKRVTSFEEMTNLPK 56 Query: 59 EVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118 + L+ F I + + + + DGT K+L + P + IETV + ++ ++CV Sbjct: 57 PLIEKLSAAFVINPLKQMVVQEASDGTVKYLFQLPDNHM-----IETVLMRQEYGMSVCV 111 Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 ++QVGC++ C+FC +G K R+LTA EI+ Q++L + + + G + Sbjct: 112 TTQVGCNIGCTFCASGLLKKQRDLTAGEIVAQIMLVQHYFDE------------RNEGER 159 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGV 237 +S++V+MG+GEP N+DNV L I +D GL+ R IT+STSG I E + V Sbjct: 160 VSHVVVMGIGEPFDNYDNVMHFLQIINDPKGLAIGARHITVSTSGLAHKIREFAENGLQV 219 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 LAISLHA +N++R ++ INR +P+E L+ A +Y +N RITFEY+ML +ND P Sbjct: 220 NLAISLHAPNNEVRTSMMRINRSFPIEKLMAAVDYYLEKTNR-RITFEYIMLDHVNDRPE 278 Query: 298 DALNLIKILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 A L +LK + +NLIP+NP + Y S + D++ F + +K++G + IR Sbjct: 279 HARQLAALLKDKKKLSYVNLIPYNPVSEHDQYARSKKADVLAFYDILKKNGINCVIRKEH 338 Query: 355 GLDILAACGQLKSLSKRIPKVP 376 G DI AACGQL+S + Sbjct: 339 GTDIDAACGQLRSKQMKKEASA 360 >gi|125973091|ref|YP_001037001.1| radical SAM protein [Clostridium thermocellum ATCC 27405] gi|256004594|ref|ZP_05429572.1| radical SAM enzyme, Cfr family [Clostridium thermocellum DSM 2360] gi|281417286|ref|ZP_06248306.1| radical SAM enzyme, Cfr family [Clostridium thermocellum JW20] gi|205829739|sp|A3DCX9|RLMN_CLOTH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|125713316|gb|ABN51808.1| 23S rRNA m(2)A-2503 methyltransferase [Clostridium thermocellum ATCC 27405] gi|255991466|gb|EEU01570.1| radical SAM enzyme, Cfr family [Clostridium thermocellum DSM 2360] gi|281408688|gb|EFB38946.1| radical SAM enzyme, Cfr family [Clostridium thermocellum JW20] gi|316940688|gb|ADU74722.1| radical SAM enzyme, Cfr family [Clostridium thermocellum DSM 1313] Length = 349 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 131/363 (36%), Positives = 206/363 (56%), Gaps = 30/363 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K L+ M EELE + ++G + R QI++W +GI+D M+++S+++R L Sbjct: 4 KADLLSMTIEELENLMAEMG----EQKFRAKQIFQWT-NKGIKDIDAMTNLSKDLREKLK 58 Query: 66 QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I E++ + +S DGT K+L + I IE+V + + C+SSQVGC Sbjct: 59 ERAYINRLEVIKKFVSKIDGTIKYLFKLNDGNI-----IESVLMQYLHGYSACISSQVGC 113 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC + VRNLT E+L Q+L ++ +I N+V+ Sbjct: 114 KMGCKFCASTGVGFVRNLTPGEMLDQILTIQN-----------------DTKNRIGNVVI 156 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEPL N++NV K L + + G++ R I++ST G VP I R+ EE I V L+ISL Sbjct: 157 MGIGEPLDNYENVVKFLRLVNHKDGINLGARHISVSTCGLVPEILRLAEEKIPVTLSISL 216 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA ++++R ++PIN++Y ++ +I+AC+ Y +N RITFEY M+ G+NDS +AL L Sbjct: 217 HAPNDEIREKIMPINKRYSIDKIIEACKIYTETTNR-RITFEYAMIDGLNDSKENALELA 275 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K ++G+ +NLIP N + S ++ I F E ++R G + +R G DI AACG Sbjct: 276 KRIRGMLCHVNLIPVNTVSDTGFKRSSREKITAFKEILERFGVETTVRRELGSDINAACG 335 Query: 364 QLK 366 QL+ Sbjct: 336 QLR 338 >gi|210617186|ref|ZP_03291453.1| hypothetical protein CLONEX_03675 [Clostridium nexile DSM 1787] gi|210149461|gb|EEA80470.1| hypothetical protein CLONEX_03675 [Clostridium nexile DSM 1787] Length = 345 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 122/367 (33%), Positives = 202/367 (55%), Gaps = 29/367 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K+ + EEL++ + +G R Q+++W++V+ F+ M+++S+ +R Sbjct: 1 MEKKDIRSYTFEELKQEMEHLG----EKSFRAKQVYEWLHVKLADSFEEMTNLSKALREK 56 Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L+ + I ++++ + S DGT K+L C+ +E+V + K ++C+SSQV Sbjct: 57 LDAAYEIAPVKMLERQESKLDGTNKFLF-----CLQDGHVVESVLMKYKHGNSVCISSQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC + L RNL A E+L Q+ + + G+ ++SN+ Sbjct: 112 GCRMGCKFCASTIGGLERNLKASEMLGQIYQIQKISGE-----------------RVSNV 154 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 V+MG GEP+ N+DN K + I +D GL S+R IT+ST G VPN+ R+ EE + + LA+ Sbjct: 155 VVMGTGEPMDNYDNFLKFIHILTDEHGLHISQRNITVSTCGIVPNMKRLAEEKLQITLAL 214 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH + + R +L+P+ KY L ++ AC +Y + R+TFEY ++ G+ND DA Sbjct: 215 SLHGSTQEKRKVLMPVANKYELSEVLAACDYYFEKTGR-RVTFEYSLVHGVNDKEEDAAE 273 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 LI ILK +NLIP NP + +K+ + F +++SG + IR G DI A Sbjct: 274 LIHILKHRNCHLNLIPVNPIKERTFEKPSKKNAMNFKNKLEKSGINVTIRREMGSDIDGA 333 Query: 362 CGQLKSL 368 CGQL+ Sbjct: 334 CGQLRRR 340 >gi|169827065|ref|YP_001697223.1| ribosomal RNA large subunit methyltransferase N [Lysinibacillus sphaericus C3-41] gi|205829785|sp|B1HQE6|RLMN_LYSSC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|168991553|gb|ACA39093.1| UPF0063 protein [Lysinibacillus sphaericus C3-41] Length = 380 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 123/366 (33%), Positives = 204/366 (55%), Gaps = 25/366 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 KES+ +LE+ L + G R +QI+ W+Y + ++ F+ MS++S+ +R L Sbjct: 34 KESIYSFQPHQLEDWLKENG----EKPFRAAQIFDWLYNKRVKTFEEMSNLSKGLRDKLA 89 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +F++ + ++ S DGT K+L + IETV + + ++CV++QVGC Sbjct: 90 ANFALSTLSTIIKQESKDGTIKFLFQLQD-----GYSIETVLMRHEYGNSVCVTTQVGCR 144 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC + L R+L A EI+ QV+ + L + V ++S+IV+M Sbjct: 145 IGCTFCASTLGGLKRHLLAGEIVEQVVKVQQTLDE--------------VNERVSHIVIM 190 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+D + L + + GL+ R IT+STSG VP I + +E + + A+SLH Sbjct: 191 GIGEPFDNYDAMMNFLKVINHEKGLNIGARHITVSTSGIVPKIYQFADEQLQINFAVSLH 250 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A + + R L+PI R Y L+ L++A R+Y + R++FEY ++ G NDS A L Sbjct: 251 APNQEARQKLMPIARAYKLDELMEAVRYYTKKTGR-RVSFEYGLMSGENDSVEIAEELSA 309 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 ++KGI +NLIP N P +Y+ + + I F + +K++G + IR +G DI AACGQ Sbjct: 310 LIKGIKCHVNLIPVNYVPERDYVRTSRSQIFAFEKTLKKNGINVTIRREQGSDIAAACGQ 369 Query: 365 LKSLSK 370 L++ + Sbjct: 370 LRAQER 375 >gi|171463401|ref|YP_001797514.1| radical SAM enzyme, Cfr family [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192939|gb|ACB43900.1| radical SAM enzyme, Cfr family [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 383 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 145/355 (40%), Positives = 206/355 (58%), Gaps = 9/355 (2%) Query: 30 HVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWL 89 R Q+ +WI+ RG+ D MSD+++ R L ++ ++ ++ + DGTRKWL Sbjct: 10 EKPFRAKQLMQWIHQRGVSDINHMSDLAKSFRATLLDKTEVLSLPVIKDEHALDGTRKWL 69 Query: 90 LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149 L +G +E+V+IPE RGTLC+SSQ GC++ C FC TG Q RNLT+ EI+ Sbjct: 70 L-----DVGAGNAVESVFIPEDDRGTLCISSQAGCAVNCRFCSTGHQGFARNLTSGEIIG 124 Query: 150 QVLLARSLLGDFPGC----EDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS 205 Q+ A LL + P E GR ISN+VMMGMGEPL N+DNV +L + Sbjct: 125 QLWFAEHLLRNDPEAVCRIEKFLTPGWEHTGRVISNVVMMGMGEPLLNYDNVVSALRLML 184 Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEM 265 D S+RR+T+STSG VP I R+ ++ V LA+SLHA ++ LR+ LVP+N+KY L Sbjct: 185 DDRAYGLSRRRVTVSTSGVVPMIDRLAQDCPVALAVSLHAPNDALRDQLVPLNQKYLLRE 244 Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE 325 L+DAC Y + +TFEY ML +NDS A L+++L+ I KINLIPFNP+P Sbjct: 245 LLDACERYLPFAPRDFLTFEYCMLDSVNDSDIQAKELVRLLRNIKCKINLIPFNPFPESG 304 Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEM 380 S + + F+ + +G + +R RG DI AACGQL +V +++ Sbjct: 305 LKRSPAQRVNAFAGILLDAGMVATVRKTRGDDIAAACGQLAGDVVDRTRVRERDV 359 >gi|258511306|ref|YP_003184740.1| radical SAM enzyme, Cfr family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478032|gb|ACV58351.1| radical SAM enzyme, Cfr family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 348 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 124/365 (33%), Positives = 209/365 (57%), Gaps = 27/365 (7%) Query: 7 ESLIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 L EEL + ++ ++G R Q+++W+Y + + F M+++ + +R LN Sbjct: 2 VHLYDFTLEELRDWVVRELG----ERPFRAVQLYEWMYQKRAKSFDEMTNLPKALRQRLN 57 Query: 66 QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + + + V + S D T K+LL +P V +E+V + ++CVSSQVGC Sbjct: 58 EMAYLRSAKQVVRQDSKVDPTTKFLLAWPD-----GVTVESVLMRHGYGNSVCVSSQVGC 112 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + ++R++TA E++ QV+ ++SLL + VG+++S++V+ Sbjct: 113 KMGCTFCASTLGGMIRHMTAGEMVEQVMHSQSLLDE--------------VGQRVSSVVV 158 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243 MG GEP+ N+D V + + I ++ GL+ +R IT+ST G VP I R+ EE + LA+SL Sbjct: 159 MGSGEPMDNYDQVMRFIDIITNEHGLNIGQRHITVSTVGLVPGIRRLAEEGRQITLAVSL 218 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA ++ +R ++P+N+ YP+ L++AC Y + RI+FEY ++ G NDS A L Sbjct: 219 HAPNDAIRGRMMPVNKAYPIAKLMEACHDYYRKTGR-RISFEYALVAGENDSLECAKELA 277 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +++KG+P +NLIP N P Y +D+K I F + +G ++ IR G DI AACG Sbjct: 278 ELVKGLPCHVNLIPVNYVPERGYRRTDRKQIFAFWRALLDAGVNATIRREMGHDIAAACG 337 Query: 364 QLKSL 368 QL++ Sbjct: 338 QLRAQ 342 >gi|307264804|ref|ZP_07546366.1| radical SAM enzyme, Cfr family [Thermoanaerobacter wiegelii Rt8.B1] gi|306920062|gb|EFN50274.1| radical SAM enzyme, Cfr family [Thermoanaerobacter wiegelii Rt8.B1] Length = 342 Score = 425 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 140/368 (38%), Positives = 201/368 (54%), Gaps = 30/368 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L M EE+EE + IG R R QI+KWIY + I DF M+DIS+ +R L + Sbjct: 3 NLKDMTLEEMEEFFVNIG----ESRYRAKQIYKWIYDKKITDFDEMTDISKNLRSKLKEI 58 Query: 68 FSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I +I ++S D T K+L I IE V I + T CVS+QVGC++ Sbjct: 59 AYISQLKIEARRVSEVDDTVKYLFLLEDNNI-----IEGVAIKYRFGNTACVSTQVGCNM 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 CSFC + VR+L A E++ QV+ G KISNIV+MG Sbjct: 114 RCSFCASAIGGKVRDLKASEMIDQVIAIDGDYG------------------KISNIVLMG 155 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 GEP N+D V K + I ++ GL R IT+ST G VP I + +E + V L+ISLHA Sbjct: 156 SGEPFDNYDEVMKFIKIVNNPQGLGIGGRHITISTCGIVPKIYQFADEKLQVNLSISLHA 215 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +++LR L+PIN+ YPLE L+ AC++Y + RRITFEY +++G+ND A L+ + Sbjct: 216 PNDELRTQLMPINKAYPLEELMKACKYYVEKT-RRRITFEYSLIEGVNDKKEHAYQLVDL 274 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG+ +NLIP N + ++ + ++ F + I+ +G S +R G DI AACGQL Sbjct: 275 LKGMLCHVNLIPINYVKEIGFKKANNEKVMMFKKIIEDAGISCTVRRELGSDIEAACGQL 334 Query: 366 KSLSKRIP 373 + + Sbjct: 335 RRKYLKER 342 >gi|312910636|ref|ZP_07769477.1| radical SAM enzyme, Cfr family [Enterococcus faecalis DAPTO 516] gi|311289012|gb|EFQ67568.1| radical SAM enzyme, Cfr family [Enterococcus faecalis DAPTO 516] Length = 360 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 129/368 (35%), Positives = 213/368 (57%), Gaps = 26/368 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++KES+ G+ RE+L + L G + R +Q+W+W+Y + + F MS+IS+ + L Sbjct: 1 MQKESIYGLTREQLVDWFLAHG----EKKFRATQVWEWLYTKRVASFSEMSNISKSLMTL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L ++FS+ + V + + DGT K+L P + + IETV + ++ ++CV++QVG Sbjct: 57 LEENFSLNPLKQVIVQEAQDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+LTA EI+ Q++ + + + ++S++V Sbjct: 112 CNIGCTFCASGLLKKQRDLTAGEIVAQIMWVQHYFDE------------RGLDERVSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+ NV L +D GL+ R IT+STSG VP I + + V LAIS Sbjct: 160 VMGIGEPFDNYANVMNFLRTINDDKGLAIGARHITVSTSGLVPKIREFADSGLQVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N++R ++ INR +P+E L+ A Y +N R+TFEY+ML +ND P A L Sbjct: 220 LHAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKTNR-RVTFEYIMLSQVNDRPEHAQQL 278 Query: 303 IKILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 +L+ + +NLIP+NP + Y S ++ ++ F + +K++G + IR G DI Sbjct: 279 ADLLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDID 338 Query: 360 AACGQLKS 367 AA GQ++S Sbjct: 339 AAFGQIRS 346 >gi|315301572|ref|ZP_07872683.1| radical SAM enzyme, Cfr family [Listeria ivanovii FSL F6-596] gi|313630054|gb|EFR98076.1| radical SAM enzyme, Cfr family [Listeria ivanovii FSL F6-596] Length = 368 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 137/387 (35%), Positives = 219/387 (56%), Gaps = 27/387 (6%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 ++K S+ G+ +L E L G + R +Q+W W+Y + ++ F+ MS++ +E Sbjct: 1 TMEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIE 56 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 LL +F + E + S DGT K+L + + IETV + ++ ++CV++QV Sbjct: 57 LLMANFVMNTLEAQVVQESTDGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC++ C+FC +G K R+LTA EI+ Q++ + L D + ++S++ Sbjct: 112 GCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYLDD------------RQLEERVSHV 159 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAI 241 V+MG+GEP N+DNV L + + GL+ R IT+STSG P I E+ V LAI Sbjct: 160 VVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLAI 219 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA +N+LR ++ IN+ Y +E L++A +Y +N RITFEY+MLKG+ND ++AL Sbjct: 220 SLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVEKTNR-RITFEYIMLKGVNDHKKEALE 278 Query: 302 LIKIL--KGIPAKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 L +L A +NLIP+NP +Y S ++D++ F + +K++G + IR G DI Sbjct: 279 LAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTDI 338 Query: 359 LAACGQLKSLS-KRIPKVPRQEMQITG 384 AACGQL+S KR+ R + + Sbjct: 339 DAACGQLRSKQIKRVGVRERMKQKQAA 365 >gi|333001958|gb|EGK21524.1| hypothetical protein SFK218_3513 [Shigella flexneri K-218] Length = 336 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 149/346 (43%), Positives = 199/346 (57%), Gaps = 19/346 (5%) Query: 42 IYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPV 101 +Y +F M+DI++ +R L + I PE+V+E+ S DGT KW + Sbjct: 1 MYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGD------Q 54 Query: 102 EIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF 161 +ETVYIPE R TLCVSSQVGC+L C FC T Q RNL EI+ QV A ++G Sbjct: 55 RVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG-- 112 Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221 + R I+N+VMMGMGEPL N +NV ++ I D G SKRR+TLST Sbjct: 113 --------AAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLST 164 Query: 222 SGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR- 280 SG VP + ++G+ I V LAISLHA ++++R+ +VPIN+KY +E + A R Y SNA Sbjct: 165 SGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQ 224 Query: 281 -RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSE 339 R+T EYVML +ND A L ++LK P KINLIP+NP+P Y S I FS+ Sbjct: 225 GRVTIEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFPDAPYGRSSNSRIDRFSK 284 Query: 340 CIKRSGYSSPIRTPRGLDILAACGQLKSLS-KRIPKVPRQEMQITG 384 + G+++ +R RG DI AACGQL R + R+ MQ Sbjct: 285 VLMSYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKRMQGEA 330 >gi|220917417|ref|YP_002492721.1| radical SAM enzyme, Cfr family [Anaeromyxobacter dehalogenans 2CP-1] gi|219955271|gb|ACL65655.1| radical SAM enzyme, Cfr family [Anaeromyxobacter dehalogenans 2CP-1] Length = 372 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 148/378 (39%), Positives = 215/378 (56%), Gaps = 19/378 (5%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + +E L + +G R Q+++W+++RG + ++D+ + +R L + Sbjct: 9 PDLRSLPQERLAALIAGLG----EKPFRARQVYRWLHLRGAASLEELTDVPRALRERLAE 64 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + E E+ S DGT KW R G IE+VY+PE R TLCVS+QVGC++ Sbjct: 65 GTRLTTLERATEQRSADGTIKWTWRT-----GDGKLIESVYMPETDRKTLCVSTQVGCAV 119 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC TGT L RNLT EI+ QV A L + E R ++N+V MG Sbjct: 120 GCTFCMTGTMGLARNLTPGEIVDQVHRANRRLIELGEGEGP---------RPLTNLVFMG 170 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N+ ++K +L + G +FS R +T+STSG VP + R+GEE V LA+SL+A Sbjct: 171 MGEPLANYRSLKVALDLLLSEDGPNFSHRHVTVSTSGLVPVMRRLGEETQVKLAVSLNAT 230 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ R+ ++PINR+YPL L+ ACR +P + RRITFEYVML G+ND+P DA L ++L Sbjct: 231 TDAQRDAIMPINRRYPLAELLRACREFP-MKQGRRITFEYVMLGGVNDAPEDAERLARLL 289 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +GIPAK+NLIP+N PG + + F + + ++ +R RG DI AACGQL Sbjct: 290 RGIPAKVNLIPYNENPGLGFAAPAPSAVERFRDLLVARNVTAVVRKNRGTDIAAACGQLA 349 Query: 367 SLSKRIPKVPRQEMQITG 384 + R +TG Sbjct: 350 AEGGPGDPRRRAAAPLTG 367 >gi|291547144|emb|CBL20252.1| 23S rRNA m(2)A-2503 methyltransferase [Ruminococcus sp. SR1/5] Length = 346 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 123/362 (33%), Positives = 198/362 (54%), Gaps = 30/362 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + M EEL+E + KIG R QI+ W++ + + + M+++S+ +R L+ Sbjct: 2 TDVKSMTMEELKEFMTKIG----EKPFRAKQIYAWLHQQLVTSWDEMTNLSKSLREKLSA 57 Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I D +IS DGTRK+L + + IE+V + ++C+SSQVGC Sbjct: 58 -YPITALTQADVRISKIDGTRKYLFQLEDGNV-----IESVLMRYHHGNSVCISSQVGCR 111 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC + L R L E+L Q+ ++ G+ +++N+V+M Sbjct: 112 MGCRFCASTIGGLTRCLKPSEMLDQIYRIQADTGE-----------------RVANVVVM 154 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G GEP+ N+DN+ + + I +D GL S+R +T+ST G VP + + EE + + LA+SLH Sbjct: 155 GTGEPMDNYDNLVRFVRILTDENGLGISQRNVTVSTCGIVPKMYDLAEEKLQITLALSLH 214 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +++ R L+PI KY ++ ++DACR+Y + RITFEY ++ G+NDS DA L Sbjct: 215 APNDEKRQELMPIANKYSMDEVLDACRNYFDKTGR-RITFEYSLVAGVNDSEEDARQLAG 273 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +KGI +NLIP NP Y+ S ++ + F +++ G + IR G DI ACGQ Sbjct: 274 RIKGINCHVNLIPVNPIKERSYVRSTRQAVENFKIKLEKYGINVTIRREMGSDIDGACGQ 333 Query: 365 LK 366 L+ Sbjct: 334 LR 335 >gi|326389541|ref|ZP_08211108.1| radical SAM enzyme, Cfr family [Thermoanaerobacter ethanolicus JW 200] gi|325994546|gb|EGD52971.1| radical SAM enzyme, Cfr family [Thermoanaerobacter ethanolicus JW 200] Length = 342 Score = 425 bits (1092), Expect = e-117, Method: Composition-based stats. Identities = 139/368 (37%), Positives = 201/368 (54%), Gaps = 30/368 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L M EE+EE + IG R R QI+KWIY + I DF M+DIS+ +R L + Sbjct: 3 NLKDMTLEEMEEFFVNIG----ESRYRAKQIYKWIYDKKITDFDEMTDISKNLRSKLKEI 58 Query: 68 FSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I +I ++S D T K+L I IE V I + T C+S+QVGC++ Sbjct: 59 AYISQLKIEARRVSEVDDTVKYLFLLEDNNI-----IEGVAIKYRFGNTACISTQVGCNM 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 CSFC + VR+L A E++ QV+ G KISNIV+MG Sbjct: 114 RCSFCASAIGGKVRDLKASEMVDQVIAIDGDYG------------------KISNIVLMG 155 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 GEP N+D V K + I ++ GL R IT+ST G VP I + +E + V L+ISLHA Sbjct: 156 SGEPFDNYDEVMKFIKIVNNPHGLGIGSRHITISTCGIVPKIYQFADEKLQVNLSISLHA 215 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +++LR L+PIN+ YPLE L+ AC++Y + RRITFEY +++G+ND A L+ + Sbjct: 216 PNDELRTQLMPINKAYPLEELMKACKYYVEKT-RRRITFEYSLIEGVNDKKEHAYQLVDL 274 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG+ +NLIP N + ++ + ++ F + I+ +G S +R G DI AACGQL Sbjct: 275 LKGMLCHVNLIPINYVKEIGFKKANNEKVMMFKKIIEDAGISCTVRRELGSDIEAACGQL 334 Query: 366 KSLSKRIP 373 + + Sbjct: 335 RRKYLKER 342 >gi|323342528|ref|ZP_08082760.1| cfr family radical SAM enzyme [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463640|gb|EFY08834.1| cfr family radical SAM enzyme [Erysipelothrix rhusiopathiae ATCC 19414] Length = 347 Score = 425 bits (1092), Expect = e-117, Method: Composition-based stats. Identities = 122/369 (33%), Positives = 205/369 (55%), Gaps = 25/369 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +S+ G E+ + G R R Q+++W+Y + + F MSD+S +R L Q Sbjct: 2 KSIYGYDLNEMGDLFESYG----EKRFRAKQLFQWLYQKRVTSFDDMSDLSISLREKLKQ 57 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 F + ++V ++++ D T K+LL + IETV + ++CV+SQVGC++ Sbjct: 58 DFELDTLKVVMKQVASDETTKFLLECSDGAL-----IETVMMKHDYGYSVCVTSQVGCAM 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC +G K RNLT+ E++ Q++ + L + +++S+IV+MG Sbjct: 113 GCKFCASGLLKKKRNLTSAEVVNQIMFVQRHLDE--------------QDKRVSHIVVMG 158 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 +GEP N+DN+ + + I + GL R IT+STSG P I + +E V LAISLHA Sbjct: 159 IGEPFDNYDNIMRFIRIVNHDHGLGIGARHITISTSGVAPVIKKFADEQTQVNLAISLHA 218 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ LR+ ++P+N+ + LE L DA ++Y SN R+TFEY+++ +ND A L+ + Sbjct: 219 PNDTLRSEIMPVNKMFNLEKLFDALKYYQSKSNR-RLTFEYILIDNVNDQIAQAKELVAL 277 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 ++G+ A +NLIP+N + + + F + +KR+G IR +G +I AACGQL Sbjct: 278 IRGMNAYVNLIPYNEVDENPFRQTKPEQAAKFYDYLKRNGIQCTIRREKGSEIDAACGQL 337 Query: 366 KSLSKRIPK 374 ++ ++ K Sbjct: 338 RANVEKQRK 346 >gi|329117105|ref|ZP_08245822.1| 23S rRNA m2A2503 methyltransferase [Streptococcus parauberis NCFD 2020] gi|326907510|gb|EGE54424.1| 23S rRNA m2A2503 methyltransferase [Streptococcus parauberis NCFD 2020] Length = 361 Score = 425 bits (1092), Expect = e-117, Method: Composition-based stats. Identities = 128/375 (34%), Positives = 204/375 (54%), Gaps = 26/375 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+EL ++ G + R +QIW W+Y + + F+ M++IS++ LLN Sbjct: 2 KPSIYSLTRDELIAWAIENG----QKKFRATQIWDWLYKKRVDSFEEMTNISKDFIALLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DNFCVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L + EI Q++L + + ++S++V+M Sbjct: 113 IGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDE------------RGKDERVSHVVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+ NV K L +D GL+ R IT+STSG I E + V LA+SLH Sbjct: 161 GIGEPFDNYTNVMKFLRTINDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +NDLR+ ++ INR +PLE L A +Y +N R+TFEY+ML +ND A L Sbjct: 221 APNNDLRSQIMRINRSFPLEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAD 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 + K I +NLIP+NP + Y S ++ + F + +K++G + +R G DI AA Sbjct: 280 LTKNIRKLCYVNLIPYNPVSEHDQYSRSPKERVSAFYDVLKKTGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPKVP 376 CGQL+S + + + Sbjct: 340 CGQLRSNTMKKDRQE 354 >gi|295091952|emb|CBK78059.1| 23S rRNA m(2)A-2503 methyltransferase [Clostridium cf. saccharolyticum K10] Length = 376 Score = 425 bits (1092), Expect = e-117, Method: Composition-based stats. Identities = 121/367 (32%), Positives = 198/367 (53%), Gaps = 29/367 (7%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 + + + M ELE L ++G R Q+++W++V+ F M+++S+ +R Sbjct: 28 RTVSETDIKSMTLPELEAYLKEMG----EKPFRAKQLYQWMHVKLAASFDEMTNLSKGLR 83 Query: 62 HLL-NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 L Q F + + DGTRK+L + IE+V + K ++C+SS Sbjct: 84 ETLGRQCFYASLTPVDVRISAVDGTRKYLFELSDGNV-----IESVLMRYKHGNSVCISS 138 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC + C FC + L RNL E+L Q+ + G+ ++S Sbjct: 139 QVGCRMGCRFCASTLDGLERNLKPSEMLEQIYRIQRDTGE-----------------RVS 181 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239 N+V+MG GEP+ N+DN+ + + + +D GL+ S+R +T+ST G VP I + EE + V L Sbjct: 182 NVVVMGSGEPMDNYDNLIRFIHLLTDENGLNISQRNVTVSTCGIVPRIRQFAEEGLQVTL 241 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA ++++R L+P+ + Y L ++DAC +Y + R+TFEY ++KG+ND+ +A Sbjct: 242 ALSLHAPNDEVRKTLMPVAKSYALRDVLDACHYYFEKTGR-RLTFEYSLVKGVNDNLEEA 300 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L +++K +NLIP NP +Y SD+K I F ++R G + +R G DI Sbjct: 301 RALAELIKDQHGHVNLIPVNPIKERDYKQSDRKAIEDFKNYLERRGINVTVRREMGRDID 360 Query: 360 AACGQLK 366 ACGQL+ Sbjct: 361 GACGQLR 367 >gi|283797835|ref|ZP_06346988.1| radical SAM enzyme, Cfr family [Clostridium sp. M62/1] gi|291074523|gb|EFE11887.1| radical SAM enzyme, Cfr family [Clostridium sp. M62/1] Length = 376 Score = 425 bits (1092), Expect = e-117, Method: Composition-based stats. Identities = 121/367 (32%), Positives = 198/367 (53%), Gaps = 29/367 (7%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 + + + M ELE L ++G R Q+++W++V+ F M+++S+ +R Sbjct: 28 RTVSETDIKSMTLPELEAYLKEMG----EKPFRAKQLYQWMHVKLAASFDEMTNLSKGLR 83 Query: 62 HLL-NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 L Q F + + DGTRK+L + IE+V + K ++C+SS Sbjct: 84 ETLGRQCFYASLTPVDVRISAVDGTRKYLFELSDGNV-----IESVLMRYKHGNSVCISS 138 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC + C FC + L RNL E+L Q+ + G+ ++S Sbjct: 139 QVGCRMGCRFCASTLDGLERNLKPSEMLEQIYRIQRDTGE-----------------RVS 181 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239 N+V+MG GEP+ N+DN+ + + + +D GL+ S+R +T+ST G VP I + EE + V L Sbjct: 182 NVVVMGSGEPMDNYDNLIRFIHLLTDENGLNISQRNVTVSTCGIVPRIRQFAEEGLQVTL 241 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA ++++R L+P+ + Y L ++DAC +Y + R+TFEY ++KG+ND+ +A Sbjct: 242 ALSLHAPNDEVRKTLMPVAKSYALRDVLDACHYYFEKTGR-RLTFEYSLVKGVNDNLEEA 300 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L +++K +NLIP NP +Y SD+K I F ++R G + +R G DI Sbjct: 301 RALAELIKDQHGHVNLIPVNPIKERDYKQSDRKAIEDFKNYLERRGINVTVRREMGRDID 360 Query: 360 AACGQLK 366 ACGQL+ Sbjct: 361 GACGQLR 367 >gi|218290479|ref|ZP_03494599.1| radical SAM enzyme, Cfr family [Alicyclobacillus acidocaldarius LAA1] gi|218239500|gb|EED06695.1| radical SAM enzyme, Cfr family [Alicyclobacillus acidocaldarius LAA1] Length = 348 Score = 425 bits (1092), Expect = e-117, Method: Composition-based stats. Identities = 125/365 (34%), Positives = 209/365 (57%), Gaps = 27/365 (7%) Query: 7 ESLIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 L EEL + ++ ++G R Q+++W+Y + + F M+++ + +R LN Sbjct: 2 VHLYDFTMEELRDWVVRELG----ERPFRAVQLYEWMYQKRAKSFDEMTNLPKALRQRLN 57 Query: 66 QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + + E V + S D T K+LL +P V +E+V + + ++CVSSQVGC Sbjct: 58 EIAYLRSAEQVVRQDSKVDPTTKFLLAWPD-----GVTVESVLMRHRYGNSVCVSSQVGC 112 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + ++RN+TA E++ QVL +++LL + G+++S++V+ Sbjct: 113 KMGCTFCASTLGGMIRNMTAGEMVEQVLHSQALLDEI--------------GQRVSSVVV 158 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243 MG GEP+ N+D V + + I ++ GL+ +R IT+ST G VP I R+ EE + LA+SL Sbjct: 159 MGSGEPMDNYDQVMRFIDIITNEHGLNIGQRHITVSTVGLVPGIRRLAEEGRNITLAVSL 218 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA ++ +R ++P+N+ YP+ L++AC Y + RI+FEY ++ G NDS A L Sbjct: 219 HAPNDAIRGRMMPVNKAYPIAKLMEACHDYYRKTGR-RISFEYALVAGENDSLECAKELA 277 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +++KG+P +NLIP N P Y +D+K I F + +G ++ IR G DI AACG Sbjct: 278 ELVKGLPCHVNLIPVNYVPERGYRRTDRKQIFAFWRALLDAGVNATIRREMGHDIAAACG 337 Query: 364 QLKSL 368 QL++ Sbjct: 338 QLRAQ 342 >gi|306832938|ref|ZP_07466070.1| cfr family radical SAM enzyme [Streptococcus bovis ATCC 700338] gi|304424837|gb|EFM27971.1| cfr family radical SAM enzyme [Streptococcus bovis ATCC 700338] Length = 368 Score = 425 bits (1092), Expect = e-117, Method: Composition-based stats. Identities = 128/373 (34%), Positives = 212/373 (56%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+EL E ++ G + R +QIW W+Y + ++ F+ M++IS++ +LN Sbjct: 9 KPSIYALTRDELIEWAIEHG----EKKFRATQIWDWLYRKRVQSFEEMTNISKDFIAVLN 64 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++F + + + + DGT K+L P + IETV + + ++CV+SQVGC+ Sbjct: 65 ENFCVNPLKQRVVQEASDGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTSQVGCN 119 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + CSFC +G K R+LT+ EI Q+++ + + ++S++V+M Sbjct: 120 IGCSFCASGLLKKQRDLTSGEITSQIMMVQKYFDE------------RGQDERVSHVVVM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N++NV + L +D GL+ R IT+STSG I E + V LA+SLH Sbjct: 168 GIGEPFDNYNNVLRFLRTINDDNGLAIGARHITVSTSGLAHKIRDFAHESLQVNLAVSLH 227 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ +NR +PLE L A +Y +N R+TFEY+ML +ND P +A L Sbjct: 228 APNNELRSQIMRVNRSFPLEKLFAAIEYYVETTNR-RVTFEYIMLNEVNDFPENAQELAD 286 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 + K I + INLIP+NP + Y S ++ + F + +K++G + +R G DI AA Sbjct: 287 LTKKIRKLSYINLIPYNPVSEHDQYSRSSKERVAAFYDVLKKNGVNCVVRQEHGTDIDAA 346 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 347 CGQLRSNTMKRDR 359 >gi|167037727|ref|YP_001665305.1| ribosomal RNA large subunit methyltransferase N [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040388|ref|YP_001663373.1| ribosomal RNA large subunit methyltransferase N [Thermoanaerobacter sp. X514] gi|256752274|ref|ZP_05493137.1| radical SAM enzyme, Cfr family [Thermoanaerobacter ethanolicus CCSD1] gi|300914472|ref|ZP_07131788.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X561] gi|307724292|ref|YP_003904043.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X513] gi|320116142|ref|YP_004186301.1| radical SAM enzyme, Cfr family [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|205829918|sp|B0KA06|RLMN_THEP3 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829919|sp|B0K1Y9|RLMN_THEPX RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|166854628|gb|ABY93037.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X514] gi|166856561|gb|ABY94969.1| radical SAM enzyme, Cfr family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256748842|gb|EEU61883.1| radical SAM enzyme, Cfr family [Thermoanaerobacter ethanolicus CCSD1] gi|300889407|gb|EFK84553.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X561] gi|307581353|gb|ADN54752.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X513] gi|319929233|gb|ADV79918.1| radical SAM enzyme, Cfr family [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 342 Score = 425 bits (1092), Expect = e-117, Method: Composition-based stats. Identities = 140/368 (38%), Positives = 202/368 (54%), Gaps = 30/368 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L M EE+EE + IG R R QI+KWIY + + DF M+DIS+ +R L + Sbjct: 3 NLKDMTLEEMEEFFVNIG----ESRYRAKQIYKWIYGKKVTDFDQMTDISKNLRSKLKEI 58 Query: 68 FSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + +I + ++S D T K+L I IE V I + T CVS+QVGC++ Sbjct: 59 AYVSQLKIEERRVSEIDDTVKYLFLLEDGNI-----IEGVAIKYRFGNTACVSTQVGCNM 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 CSFC + VR+L A E++ QV+ S G KISNIV+MG Sbjct: 114 RCSFCASAIGGKVRDLKASEMVDQVMAIDSDYG------------------KISNIVLMG 155 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 GEP N+D V K + I ++ GL R IT+ST G VP I + +E + V L+ISLHA Sbjct: 156 SGEPFDNYDEVMKFIKIVNNPHGLGIGSRHITISTCGIVPKIYQFADEKLQVNLSISLHA 215 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +++LR L+PIN+ YPLE L+ AC++Y + RRITFEY +++G+ND A L+ + Sbjct: 216 PNDELRTQLMPINKAYPLEELMKACKYYVDKT-RRRITFEYSLIEGVNDKKEHAYQLVDL 274 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG+ INLIP N + ++ + ++ F I+ +G S +R G DI AACGQL Sbjct: 275 LKGMLCHINLIPINYVREIGFKKANNEKVMMFKRIIEDAGISCTVRRELGSDIEAACGQL 334 Query: 366 KSLSKRIP 373 + + Sbjct: 335 RRKYLKER 342 >gi|312866070|ref|ZP_07726291.1| 23S rRNA m2A2503 methyltransferase [Streptococcus downei F0415] gi|311098474|gb|EFQ56697.1| 23S rRNA m2A2503 methyltransferase [Streptococcus downei F0415] Length = 375 Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 132/373 (35%), Positives = 209/373 (56%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R++L + L+ G + R SQIW W+Y + ++ F M++IS++ LL Sbjct: 14 KPSIYSLTRDQLIDWSLEHG----QKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLK 69 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++F + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 70 ENFDFNPLKQRIVQESADGTIKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 124 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI Q++L + L D G ++S++V+M Sbjct: 125 IGCTFCASGLIKKQRDLNNGEITAQIMLVQKYLDD------------QGNGERVSHVVVM 172 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+DNV + L +D GL+ R IT+STSG I E I V LA+SLH Sbjct: 173 GIGEPFDNYDNVIRFLRTINDDNGLAIGARHITVSTSGLAHKIREFANEGIQVNLAVSLH 232 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ INR +PLE L DA +Y +N R+TFEY+ML +ND P +A L Sbjct: 233 APNNELRSSIMRINRSFPLEKLFDAIEYYIQTTNR-RVTFEYIMLNEVNDYPENAQELAD 291 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 + K I + +NLIP+N + Y S ++ + F + +K++G + +R G DI AA Sbjct: 292 LTKSIRKLSYVNLIPYNAVSEHDQYSRSTKERVDAFYDVLKKNGVNCVVRQEHGTDIDAA 351 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 352 CGQLRSNTMKRDR 364 >gi|197122634|ref|YP_002134585.1| radical SAM enzyme, Cfr family [Anaeromyxobacter sp. K] gi|196172483|gb|ACG73456.1| radical SAM enzyme, Cfr family [Anaeromyxobacter sp. K] Length = 372 Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 148/378 (39%), Positives = 214/378 (56%), Gaps = 19/378 (5%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + +E L + +G R Q+++W+++RG + M+D+ + +R L + Sbjct: 9 PDLRSLPQERLAALIAGLG----EKPFRARQVYRWLHLRGAASLEEMTDVPRALRERLAE 64 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + E E+ S DGT KW R G IE+VY+PE R TLCVS+QVGC++ Sbjct: 65 GTRLTTLERATEQRSADGTIKWTWRT-----GDGKLIESVYMPETDRKTLCVSTQVGCAV 119 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC TGT L RNL EI+ QV A L + E R ++N+V MG Sbjct: 120 GCTFCMTGTMGLARNLGPGEIVDQVHRANRRLIELGEGEGP---------RPLTNLVFMG 170 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N+ ++K +L + G +FS R +T+STSG VP + R+GEE V LA+SL+A Sbjct: 171 MGEPLANYRSLKVALDLLLSEDGPNFSHRHVTVSTSGLVPVMRRLGEETQVKLAVSLNAT 230 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ R+ ++PINR+YPL L+ ACR +P + RRITFEYVML G+ND+P DA L ++L Sbjct: 231 TDAQRDAIMPINRRYPLAELLRACREFP-MKQGRRITFEYVMLGGVNDAPEDAERLARLL 289 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +GIPAK+NLIP+N PG + + F + + ++ +R RG DI AACGQL Sbjct: 290 RGIPAKVNLIPYNENPGLGFAAPAPAAVERFRDLLVARNVTAVVRKNRGTDIAAACGQLA 349 Query: 367 SLSKRIPKVPRQEMQITG 384 + R +TG Sbjct: 350 AEGGPGDPRRRAGAPLTG 367 >gi|289433758|ref|YP_003463630.1| radical SAM family protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170002|emb|CBH26542.1| radical SAM family protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 367 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 136/380 (35%), Positives = 221/380 (58%), Gaps = 28/380 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K S+ G+ +L E L + G + R +Q+W W+Y + ++ F+ MS++ +E L Sbjct: 1 MEKSSIYGLTWTKLTEWLEEHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +F + E + S DGT K+L + + IETV + ++ ++CV++QVG Sbjct: 57 LTANFVMSTLEEQVVQESTDGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+LTA EI+ Q++ + + ++ ++S++V Sbjct: 112 CNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHY------------LDGRNLEERVSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242 +MG+GEP N+DNV L + + GL+ R IT+STSG P I E+ V LAIS Sbjct: 160 VMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR ++ IN+ Y +E L++A +Y +N RITFEY+MLKG+ND ++AL L Sbjct: 220 LHAPNNELRTSIMRINKTYSIEKLMEAIHYYVEKTNR-RITFEYIMLKGVNDHKKEALEL 278 Query: 303 IKIL--KGIPAKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 +L A +NLIP+NP +Y S ++D++ F + +K++G + IR G DI Sbjct: 279 AALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTDID 338 Query: 360 AACGQLKSLSKRIPKVPRQE 379 AACGQL+ SK+I +V +E Sbjct: 339 AACGQLR--SKQIKRVGIRE 356 >gi|260588063|ref|ZP_05853976.1| radical SAM enzyme, Cfr family [Blautia hansenii DSM 20583] gi|260541590|gb|EEX22159.1| radical SAM enzyme, Cfr family [Blautia hansenii DSM 20583] Length = 348 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 117/365 (32%), Positives = 202/365 (55%), Gaps = 29/365 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +++ + + +L+ ++++G R QI++W++ + F MS++S +R Sbjct: 1 MEQIEIKSLSLVQLKNVMIEMG----EKAFRAKQIYEWLHQKQAESFDEMSNLSAALREK 56 Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L + + ++++ + S DGT+K+L P + +E+V + K ++C+SSQV Sbjct: 57 LKERCVLTTLKMLEVQTSKIDGTQKYLFALPDGNV-----VESVLMKYKHGNSVCISSQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC + RNL E+L Q+ + L G+ ++SN+ Sbjct: 112 GCKMGCRFCASTIGGWTRNLLPSEMLEQIYRIQKLSGE-----------------RVSNV 154 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 V+MG GEPL N++N+ + + + +D GL S+R +T+ST G VP + + EE + + LAI Sbjct: 155 VVMGTGEPLDNYENLLQFIRLLTDENGLHISQRNLTVSTCGIVPKMYALAEENLQITLAI 214 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA + + R L+PI KY +E +++ACR+Y + R+TFEY ++ G ND+ DA Sbjct: 215 SLHASNQEKRAELMPIANKYSIEEVLEACRNYFEKTGR-RLTFEYSLVGGKNDTKEDAEE 273 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L +++KG+ +NLIP NP +Y+ SD+K I F +++ + IR G DI A Sbjct: 274 LARLIKGLNCHVNLIPVNPIKERDYVQSDKKVIENFKNKLEKYQINVTIRREMGRDIDGA 333 Query: 362 CGQLK 366 CGQL+ Sbjct: 334 CGQLR 338 >gi|319947501|ref|ZP_08021733.1| cfr family radical SAM enzyme [Streptococcus australis ATCC 700641] gi|319746441|gb|EFV98702.1| cfr family radical SAM enzyme [Streptococcus australis ATCC 700641] Length = 362 Score = 423 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 129/373 (34%), Positives = 211/373 (56%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ G+ R+EL E + G + R +QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYGLTRQELIEWAEENG----EKKFRATQIWEWLYRKRVQSFEEMTNLSKDLIETLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F I + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DQFVINPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L + EI+ Q++L + + ++S+IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNSGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+ NV + +D GL+ R IT+STSG I E + V LA+SLH Sbjct: 161 GIGEPFDNYKNVLSFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +NDLR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L + Sbjct: 221 APNNDLRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA Sbjct: 280 LLKKIKKLSYVNLIPYNPVSEHDQYSRSPRERVMAFYDTLKKNGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKRDR 352 >gi|291563554|emb|CBL42370.1| 23S rRNA m(2)A-2503 methyltransferase [butyrate-producing bacterium SS3/4] Length = 348 Score = 423 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 116/365 (31%), Positives = 196/365 (53%), Gaps = 29/365 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K+ L M EEL E + ++G R Q+++W++V+ +++ + ++ Sbjct: 1 MEKKDLKSMTLEELTEFVKELG----EKPFRAKQLYQWMHVKLAESLDECTNLPKSLKEK 56 Query: 64 LNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L+++ + + V S DGTRK+L + IE+V + ++C+SSQV Sbjct: 57 LSEYSTYTSLKTVKMLESGIDGTRKYLFGLDDGNV-----IESVLMKYHHGNSVCISSQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC + L RNL E+L Q+ + G+ ++SN+ Sbjct: 112 GCRMGCRFCASTLDGLTRNLRPSEMLDQIYRIQRSTGE-----------------RVSNV 154 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 V+MG GEP+ N+DN+ + + + SD GL+ S+R IT+ST G VP I ++ EE + + LA+ Sbjct: 155 VVMGSGEPMDNYDNLIRFIRLLSDENGLNISQRNITVSTCGIVPKILKLAEEGLSITLAL 214 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++ R L+PI Y L ++ AC+ Y + R+TFEY +++G+ND+ +A Sbjct: 215 SLHAPDDETRKTLMPIANSYSLSEVLPACKEYYKKTGR-RLTFEYSLVQGVNDNLDEAKR 273 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L +LK + +NLIP NP ++ S++ I F +++ G + IR G DI A Sbjct: 274 LTALLKDMQGHVNLIPVNPIKERDFKQSNRDAIDAFRGYLEKHGINVTIRREMGRDIGGA 333 Query: 362 CGQLK 366 CGQL+ Sbjct: 334 CGQLR 338 >gi|212704175|ref|ZP_03312303.1| hypothetical protein DESPIG_02230 [Desulfovibrio piger ATCC 29098] gi|212672379|gb|EEB32862.1| hypothetical protein DESPIG_02230 [Desulfovibrio piger ATCC 29098] Length = 357 Score = 423 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 141/370 (38%), Positives = 206/370 (55%), Gaps = 27/370 (7%) Query: 7 ESLIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 +L+ EL + + ++G P + R Q+W+WI+ + RDF M+++S+ R L Sbjct: 2 INLLDYTLPELTDWMQNELGEP----KFRAVQVWQWIWQKMARDFDAMTNVSKACRERLA 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVSS 120 Q I +PEIV + S D T K+LLR E+ETV IP S R T C+SS Sbjct: 58 QCAEIRWPEIVTVEQSSDDTTKFLLRLQD-----GAEVETVLIPSDSREGVRRWTQCLSS 112 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC++ C+FC TGT RN+T EIL Q+L+AR LGD + + Sbjct: 113 QVGCAMACTFCSTGTMGFERNMTMGEILGQILVAREHLGDTRPDWPV-----------LR 161 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+V MGMGEPL N NV ++L ++ GL+FS RRIT+ST G + +GE LA Sbjct: 162 NLVFMGMGEPLLNLKNVMRALESLNNDKGLNFSPRRITVSTCGIEKGLRELGESGLAYLA 221 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA + +LR ++P ++PLE L+ A + YP L RITFEY++L G+ND A Sbjct: 222 VSLHAPTQELRARIMPKAARWPLEDLLQALKSYP-LKTRERITFEYLLLGGVNDGLEQAR 280 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L +++ + K+NLI +NP G Y + ++ F + + ++ IR +G DI A Sbjct: 281 QLARVVSDVKGKLNLIVYNPSEGDPYKAPSPERVLAFEQYLWDRNITAIIRKSKGQDIKA 340 Query: 361 ACGQLKSLSK 370 ACGQLK+ + Sbjct: 341 ACGQLKAARQ 350 >gi|313905219|ref|ZP_07838587.1| radical SAM enzyme, Cfr family [Eubacterium cellulosolvens 6] gi|313469972|gb|EFR65306.1| radical SAM enzyme, Cfr family [Eubacterium cellulosolvens 6] Length = 351 Score = 423 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 129/362 (35%), Positives = 206/362 (56%), Gaps = 29/362 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + M+ EL+EAL ++G R Q+++W++ + + ++ M+++S+ +R L Sbjct: 5 TDIKSMLPGELKEALAQMG----EKPFRAGQVFEWLHDKRVEKYEEMTNLSKVLREKLAD 60 Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + ++V E+IS DGTRK+L P + IE+V++ ++C+SSQVGC Sbjct: 61 SYPLTTLQVVREEISKVDGTRKYLFALPDHNV-----IESVWMKYHHGNSVCISSQVGCR 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC + LVR+LTA E+L QV + + G+ ++SNIV+M Sbjct: 116 MGCRFCASTLGGLVRSLTASEMLEQVYQIQRVTGE-----------------RVSNIVIM 158 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G GEPL N++NV + + + S GL+ S+R IT+ST G VPNI R+ EE + V LAISLH Sbjct: 159 GSGEPLENYENVVRFVQLVSHEKGLNLSQRNITISTCGIVPNIRRLAEEELSVTLAISLH 218 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +++ R L+PI KY + ++DACR+Y + R+TFEY + G NDS DA L + Sbjct: 219 APTDEKRKKLMPIANKYSIAEIMDACRYYFDKTGR-RLTFEYALTGGQNDSDEDAAELAR 277 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L + +NLIP NP ++ ++ ++ F ++ G + IR G DI ACGQ Sbjct: 278 LLAHLNCHVNLIPVNPVRERSFIRPNRTAVLAFQNKLENFGINVTIRREMGSDINGACGQ 337 Query: 365 LK 366 L+ Sbjct: 338 LR 339 >gi|24379004|ref|NP_720959.1| ribosomal RNA large subunit methyltransferase N [Streptococcus mutans UA159] gi|81588375|sp|Q8DVG8|RLMN_STRMU RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|24376896|gb|AAN58265.1|AE014897_11 conserved hypothetical protein [Streptococcus mutans UA159] Length = 361 Score = 423 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 131/373 (35%), Positives = 211/373 (56%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R +L ++ G + R +QIW W+Y + ++ F+ M+++S++ LLN Sbjct: 2 KPSIYSLTRNDLIAWTIEHG----EKKFRATQIWDWLYRKRVQSFEEMTNLSKDFIALLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 ENFLVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI Q++L + + G +IS++V+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEITAQIMLVQKYFDE------------RGQGERISHVVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+DNV K L +D GL+ R IT+STSG I E + V LA+SLH Sbjct: 161 GIGEPFDNYDNVLKFLRTINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ INR +PLE L A +Y +N R+TFEY+ML G+NDSP +A L Sbjct: 221 APNNELRSSIMRINRSFPLEKLFAAIEYYIETTNR-RVTFEYIMLNGVNDSPENAQELAD 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 + K I + +NLIP+NP + Y S ++ + F + +K++G + +R G DI AA Sbjct: 280 LTKKIRKLSYVNLIPYNPVTEHDQYSRSPKERVDAFYDVLKKNGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKRDR 352 >gi|213621172|ref|ZP_03373955.1| hypothetical protein SentesTyp_28162 [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 315 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 148/329 (44%), Positives = 194/329 (58%), Gaps = 18/329 (5%) Query: 40 KWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGG 99 KW+Y +F M+DI++ +R L + I PE+V+E+ S DGT KW + Sbjct: 1 KWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGD----- 55 Query: 100 PVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLG 159 +ETVYIPE R TLCVSSQVGC+L C FC T Q RNL EI+ QV A ++G Sbjct: 56 -QRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG 114 Query: 160 DFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITL 219 + R I+N+VMMGMGEPL N NV ++ I D G SKRR+TL Sbjct: 115 ----------AAKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTL 164 Query: 220 STSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279 STSG VP + ++G+ I V LAISLHA ++ +R+ +VPIN+KY +E + A R Y SNA Sbjct: 165 STSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNA 224 Query: 280 R--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTF 337 R+T EYVML +ND A L ++LK P KINLIP+NP+PG Y S I F Sbjct: 225 NQGRVTIEYVMLDHVNDGTEHAHQLAELLKETPCKINLIPWNPFPGAPYGRSSNSRIDRF 284 Query: 338 SECIKRSGYSSPIRTPRGLDILAACGQLK 366 S+ + G+++ +R RG DI AACGQL Sbjct: 285 SKVLMSYGFTTIVRKTRGDDIDAACGQLA 313 >gi|325662241|ref|ZP_08150856.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae bacterium 4_1_37FAA] gi|325471493|gb|EGC74714.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae bacterium 4_1_37FAA] Length = 358 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 119/366 (32%), Positives = 199/366 (54%), Gaps = 29/366 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K+ + EEL+E + IG R Q+++W++V+ +R F M+++S+ +R L Sbjct: 4 EKKDIGSFRFEELKEEMTSIG----EKAFRAKQVYEWLHVKLVRSFDEMTNLSKPLREKL 59 Query: 65 NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + + I E++D ++S DGT K+L R + +E+V + K ++C+SSQVG Sbjct: 60 ARQYEIREVEMLDRQVSAMDGTNKFLFRLSDGHV-----VESVLMKYKHGNSVCISSQVG 114 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC + L RNLT E+L Q+ + + G+ +++N+V Sbjct: 115 CRMGCRFCASTIGGLERNLTPSEMLGQIYQIQRISGE-----------------RVANVV 157 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG GEPL N++N+ K + + +D GL S+R +T+ST G VP + + EE + + LA+S Sbjct: 158 VMGTGEPLDNYENLLKFIQMLTDEHGLHISQRNVTVSTCGIVPKMLELAEEHLQITLALS 217 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LH + + R L+P+ KY L +++AC Y + R+TFEY ++ G+ND+ DA L Sbjct: 218 LHGSTQEKRKKLMPVANKYELSEVLEACDIYFAKTGR-RMTFEYSLVHGVNDTEEDAKEL 276 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +L INLIP NP ++ ++ F +++SG + IR G DI AC Sbjct: 277 SALLSHKNCHINLIPVNPIKERDFERPTREAAEKFKNKLEKSGINVTIRREMGSDIDGAC 336 Query: 363 GQLKSL 368 GQL+ Sbjct: 337 GQLRKR 342 >gi|16799559|ref|NP_469827.1| ribosomal RNA large subunit methyltransferase N [Listeria innocua Clip11262] gi|46906726|ref|YP_013115.1| ribosomal RNA large subunit methyltransferase N [Listeria monocytogenes serotype 4b str. F2365] gi|47092541|ref|ZP_00230330.1| conserved hypothetical protein TIGR00048 [Listeria monocytogenes str. 4b H7858] gi|217965434|ref|YP_002351112.1| radical SAM enzyme, Cfr family [Listeria monocytogenes HCC23] gi|226223105|ref|YP_002757212.1| conserved hypothetical protein, highly similar to B. subtilis YloN protein [Listeria monocytogenes Clip81459] gi|254824244|ref|ZP_05229245.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL J1-194] gi|254829423|ref|ZP_05234110.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL N3-165] gi|254830533|ref|ZP_05235188.1| hypothetical protein Lmon1_04192 [Listeria monocytogenes 10403S] gi|254853849|ref|ZP_05243197.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL R2-503] gi|254933233|ref|ZP_05266592.1| 23S rRNA methyltransferase [Listeria monocytogenes HPB2262] gi|254993511|ref|ZP_05275701.1| hypothetical protein LmonocytoFSL_11352 [Listeria monocytogenes FSL J2-064] gi|255521363|ref|ZP_05388600.1| hypothetical protein LmonocFSL_09075 [Listeria monocytogenes FSL J1-175] gi|284800757|ref|YP_003412622.1| hypothetical protein LM5578_0505 [Listeria monocytogenes 08-5578] gi|284993943|ref|YP_003415711.1| hypothetical protein LM5923_0504 [Listeria monocytogenes 08-5923] gi|81403675|sp|Q723G9|RLMN_LISMF RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|81595444|sp|Q92EH6|RLMN_LISIN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807187|sp|B8DCJ5|RLMN_LISMH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|259491990|sp|C1KZZ3|RLMN_LISMC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|16412924|emb|CAC95716.1| lin0484 [Listeria innocua Clip11262] gi|46879991|gb|AAT03292.1| conserved hypothetical protein TIGR00048 [Listeria monocytogenes serotype 4b str. F2365] gi|47019133|gb|EAL09877.1| conserved hypothetical protein TIGR00048 [Listeria monocytogenes str. 4b H7858] gi|217334704|gb|ACK40498.1| radical SAM enzyme, Cfr family [Listeria monocytogenes HCC23] gi|225875567|emb|CAS04270.1| Putative conserved hypothetical protein, highly similar to B. subtilis YloN protein [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258601839|gb|EEW15164.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL N3-165] gi|258607233|gb|EEW19841.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL R2-503] gi|284056319|gb|ADB67260.1| hypothetical protein LM5578_0505 [Listeria monocytogenes 08-5578] gi|284059410|gb|ADB70349.1| hypothetical protein LM5923_0504 [Listeria monocytogenes 08-5923] gi|293584792|gb|EFF96824.1| 23S rRNA methyltransferase [Listeria monocytogenes HPB2262] gi|293593478|gb|EFG01239.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL J1-194] gi|307570010|emb|CAR83189.1| conserved hypothetical protein [Listeria monocytogenes L99] gi|328467548|gb|EGF38610.1| ribosomal RNA large subunit methyltransferase N [Listeria monocytogenes 1816] gi|332310902|gb|EGJ23997.1| Ribosomal RNA large subunit methyltransferase N [Listeria monocytogenes str. Scott A] Length = 367 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 135/386 (34%), Positives = 219/386 (56%), Gaps = 27/386 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K S+ G+ +L E L G + R +Q+W W+Y + ++ F+ MS++ +E L Sbjct: 1 MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +F + E + S DGT K+L + + IETV + ++ ++CV++QVG Sbjct: 57 LTANFVMNTLEEQVVQESTDGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+LTA EI+ Q++ + + ++ ++S++V Sbjct: 112 CNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHY------------LDGRNLEERVSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242 +MG+GEP N+DNV L + + GL+ R IT+STSG P I E+ V LAIS Sbjct: 160 VMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR ++ IN+ Y +E L++A +Y +N RITFEY+MLKG+ND ++AL L Sbjct: 220 LHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTNR-RITFEYIMLKGVNDHKKEALEL 278 Query: 303 IKIL--KGIPAKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 +L A +NLIP+NP +Y S ++D++ F + +K++G + IR G DI Sbjct: 279 AALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTDID 338 Query: 360 AACGQLKSLS-KRIPKVPRQEMQITG 384 AACGQL+S KR+ R + + Sbjct: 339 AACGQLRSKQIKRVGVRERMKQKQAA 364 >gi|116871870|ref|YP_848651.1| hypothetical protein lwe0450 [Listeria welshimeri serovar 6b str. SLCC5334] gi|123460725|sp|A0AFT6|RLMN_LISW6 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|116740748|emb|CAK19868.1| conserved hypothetical protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 367 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 135/386 (34%), Positives = 219/386 (56%), Gaps = 27/386 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K S+ G+ +L E L G + R +Q+W W+Y + ++ F+ MS++ +E L Sbjct: 1 MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +F + E + S DGT K+L + + IETV + ++ ++CV++QVG Sbjct: 57 LTANFVMNTLEEQVVQESTDGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+LTA EI+ Q++ + + ++ ++S++V Sbjct: 112 CNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHY------------LDGRNLEERVSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242 +MG+GEP N+DNV L + + GL+ R IT+STSG P I E+ V LAIS Sbjct: 160 VMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR ++ IN+ Y +E L++A +Y +N RITFEY+MLKG+ND ++AL L Sbjct: 220 LHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTNR-RITFEYIMLKGVNDHKKEALEL 278 Query: 303 IKIL--KGIPAKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 +L A +NLIP+NP +Y S ++D++ F + +K++G + IR G DI Sbjct: 279 AALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTDID 338 Query: 360 AACGQLKSLS-KRIPKVPRQEMQITG 384 AACGQL+S KR+ R + + Sbjct: 339 AACGQLRSKQIKRVGVRERMKQKQAA 364 >gi|255021262|ref|ZP_05293311.1| Ribosomal RNA large subunit methyltransferase N [Acidithiobacillus caldus ATCC 51756] gi|254969273|gb|EET26786.1| Ribosomal RNA large subunit methyltransferase N [Acidithiobacillus caldus ATCC 51756] Length = 357 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 170/360 (47%), Positives = 217/360 (60%), Gaps = 26/360 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L+G+ R L L + G P R SQI +W++ R + DF MS+IS+ +R L Sbjct: 2 PHLLGLDRAGLVALLQEWGEPP----FRASQILQWLHQRQVDDFAAMSNISKALRARLMA 57 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 PE++ ++++ D TRKWLLR P IETV+IPE+ RGTLC+SSQVGCSL Sbjct: 58 ETRWDEPEVIADQLARDETRKWLLRLPD-----GNAIETVFIPEEDRGTLCISSQVGCSL 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 CSFC TG Q L RNL++ EI+ QV +AR LG I+N+V MG Sbjct: 113 ACSFCATGAQGLNRNLSSHEIVAQVRVARRHLGLDA----------------ITNVVFMG 156 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N V + + D S RR+T+ST+G +P + ++G E V LAISLHA Sbjct: 157 MGEPLLNLKQVIPVIRLLLDDFAYGLSSRRVTVSTAGVLPGLEQLGRETPVNLAISLHAS 216 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 NDLR+ LVPINR YPL L+ ACR YP L RRITFEYVML G+NDS DA L+++L Sbjct: 217 RNDLRDELVPINRHYPLAQLMAACRSYP-LPPRRRITFEYVMLDGVNDSDADARALVRLL 275 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +G+PA +NLIPFNP+PG Y S I F E + +G + R PRG DI AACGQL Sbjct: 276 RGLPALVNLIPFNPFPGSPYRRSSLARIDAFREIVLSAGIMTVTRRPRGDDIAAACGQLA 335 >gi|331086042|ref|ZP_08335125.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406965|gb|EGG86470.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae bacterium 9_1_43BFAA] Length = 358 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 119/366 (32%), Positives = 199/366 (54%), Gaps = 29/366 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K+ + EEL+E + IG R Q+++W++V+ +R F M+++S+ +R L Sbjct: 4 EKKDIGSFRFEELKEEMTSIG----EKAFRAKQVYEWLHVKLVRSFDEMTNLSKPLREKL 59 Query: 65 NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + + I E++D ++S DGT K+L R + +E+V + K ++C+SSQVG Sbjct: 60 ARQYEIREVEMLDRQVSAMDGTNKFLFRLSDGHV-----VESVLMKYKHGNSVCISSQVG 114 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC + L RNLT E+L Q+ + + G+ +++N+V Sbjct: 115 CRMGCRFCASTIGGLERNLTPSEMLGQIYQIQRISGE-----------------RVANVV 157 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG GEPL N++N+ K + + +D GL S+R +T+ST G VP + + EE + + LA+S Sbjct: 158 VMGTGEPLDNYENLLKFIQMLTDEHGLHISQRNVTVSTCGIVPKMLELAEEHLQITLALS 217 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LH + + R L+P+ KY L +++AC Y + R+TFEY ++ G+ND+ DA L Sbjct: 218 LHGSTQEKRKKLMPVANKYELSEVLEACDIYFAKTGR-RMTFEYSLVHGVNDTEEDAKEL 276 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +L INLIP NP ++ ++ F +++SG + IR G DI AC Sbjct: 277 SALLSHRNCHINLIPVNPIKERDFERPTREAAEKFKNKLEKSGINVTIRREMGSDIDGAC 336 Query: 363 GQLKSL 368 GQL+ Sbjct: 337 GQLRKR 342 >gi|290892377|ref|ZP_06555371.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL J2-071] gi|290557943|gb|EFD91463.1| 23S rRNA methyltransferase [Listeria monocytogenes FSL J2-071] Length = 367 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 136/380 (35%), Positives = 220/380 (57%), Gaps = 28/380 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K S+ G+ +L E L G + R +Q+W W+Y + ++ F+ MS++ +E L Sbjct: 1 MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +F + E + S DGT K+L + + IETV + ++ ++CV++QVG Sbjct: 57 LTANFVMNTLEEQVVQESTDGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+LTA EI+ Q++ + + ++ ++S++V Sbjct: 112 CNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHY------------LDGRNLEERVSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242 +MG+GEP N+DNV L + + GL+ R IT+STSG P I E+ V LAIS Sbjct: 160 VMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR ++ IN+ Y +E L++A +Y +N RITFEY+MLKG+ND ++AL L Sbjct: 220 LHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTNR-RITFEYIMLKGVNDHKKEALEL 278 Query: 303 IKIL--KGIPAKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 +L A +NLIP+NP +Y S ++D++ F + +K++G + IR G DI Sbjct: 279 AALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTDID 338 Query: 360 AACGQLKSLSKRIPKVPRQE 379 AACGQL+ SK+I +V +E Sbjct: 339 AACGQLR--SKQIKRVGVRE 356 >gi|289578505|ref|YP_003477132.1| radical SAM enzyme, Cfr family [Thermoanaerobacter italicus Ab9] gi|289528218|gb|ADD02570.1| radical SAM enzyme, Cfr family [Thermoanaerobacter italicus Ab9] Length = 342 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 139/368 (37%), Positives = 202/368 (54%), Gaps = 30/368 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L M EE+EE + IG R R QI+KWIY + I DF M+DIS+ +R L + Sbjct: 3 NLKNMTLEEMEEFFVNIG----ESRYRAKQIYKWIYGKKITDFDKMTDISKNLRSKLKEI 58 Query: 68 FSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I ++ ++S D T K+L + I IE V I + T CVS+QVGC++ Sbjct: 59 AYISQLKVEARRVSEIDNTVKYLFLLEDKNI-----IEGVAIKYRFGNTACVSTQVGCNM 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 CSFC + VR+L A E++ QV+ S G KISNIV+MG Sbjct: 114 RCSFCASAIGGKVRDLKASEMVDQVMSIDSDYG------------------KISNIVLMG 155 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 GEP N+D V K + I ++ GL R IT+ST G +P I + +E + V L+ISLHA Sbjct: 156 SGEPFDNYDEVMKFIKIVNNPYGLGIGSRHITISTCGIIPKIYQFADEKLQVNLSISLHA 215 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +++LR L+PIN+ YPLE L+ AC++Y + RRITFEY +++G+ND A L+ + Sbjct: 216 PNDELRTQLMPINKAYPLEELMKACKYYIEKT-RRRITFEYSLIEGVNDKKEHAYQLVDL 274 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG+ +NLIP N + + + ++ F + I+ +G S +R G DI AACGQL Sbjct: 275 LKGMLCHVNLIPINYVKEIGFKKAANEKVMMFKKIIENAGISCTVRRELGSDIEAACGQL 334 Query: 366 KSLSKRIP 373 + + Sbjct: 335 RRKYLKER 342 >gi|257870949|ref|ZP_05650602.1| ribosomal RNA large subunit methyltransferase N [Enterococcus gallinarum EG2] gi|257805113|gb|EEV33935.1| ribosomal RNA large subunit methyltransferase N [Enterococcus gallinarum EG2] Length = 360 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 130/372 (34%), Positives = 218/372 (58%), Gaps = 26/372 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ G+ +E L + + Q + RT+Q+W+W+Y + + F+ M+++ + + LN Sbjct: 8 KPSIYGLTKESLSLWMTE----QEEKKFRTNQVWEWLYEKRVATFEEMTNLPKSLVTKLN 63 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + F I + + + + DGT K+L + P + IETV + ++ ++CV++QVGC+ Sbjct: 64 ESFVINPLKQIVLQEASDGTVKYLFQLPDNHM-----IETVLMRQEYGMSVCVTTQVGCN 118 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+LTA EI+ Q++L + + + G ++S++V+M Sbjct: 119 IGCTFCASGLLKKQRDLTAGEIVAQIMLVQHYFDEL------------NAGERVSHVVVM 166 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N++NV + L I +D GL+ R IT+STSG I E + V LAISLH Sbjct: 167 GIGEPFDNYENVMQFLQIINDPKGLAIGARHITVSTSGLAHKIKEFAENGLQVNLAISLH 226 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N++R ++ INR +P+E L++A +Y +N RITFEY+ML +ND P A L++ Sbjct: 227 APNNEVRTSMMRINRSFPIEKLMEAIDYYLEKTNR-RITFEYIMLDHVNDRPEHARQLVE 285 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK + +NLIP+NP + Y S ++D++ F + +K++G + IR G DI AA Sbjct: 286 LLKNKRKLSYVNLIPYNPVSEHDQYARSKKEDVLAFYDILKKNGINCVIRKEHGTDIDAA 345 Query: 362 CGQLKSLSKRIP 373 CGQL+S + Sbjct: 346 CGQLRSKQMKKQ 357 >gi|332363981|gb|EGJ41760.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK355] Length = 362 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 128/373 (34%), Positives = 208/373 (55%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+E+ E G + R +QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQEMIEWAEAQG----EKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + E + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DQFVVNPLEQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + ++S+IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+SLH Sbjct: 161 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +NDLR ++ INR +P+E L A +Y +N R+TFEY+ML +ND A L + Sbjct: 221 APNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKRDR 352 >gi|300765131|ref|ZP_07075117.1| cfr family radical SAM enzyme [Listeria monocytogenes FSL N1-017] gi|300514102|gb|EFK41163.1| cfr family radical SAM enzyme [Listeria monocytogenes FSL N1-017] Length = 367 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 135/386 (34%), Positives = 219/386 (56%), Gaps = 27/386 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K S+ G+ +L E L G + R +Q+W W+Y + ++ F+ MS++ +E L Sbjct: 1 MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +F + E + S DGT K+L + + IETV + ++ ++CV++QVG Sbjct: 57 LTANFVMNTLEEQVVQESTDGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+LTA EI+ Q++ + + ++ ++S++V Sbjct: 112 CNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHY------------LDGRNLEERVSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242 +MG+GEP N+DNV L + + GL+ R IT+STSG P I E+ V LAIS Sbjct: 160 VMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR ++ IN+ Y +E L++A +Y +N RITFEY+MLKG+ND ++AL L Sbjct: 220 LHAPNNELRMSIMRINKTYSIEKLMEAIHYYVNKTNR-RITFEYIMLKGVNDHKKEALEL 278 Query: 303 IKIL--KGIPAKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 +L A +NLIP+NP +Y S ++D++ F + +K++G + IR G DI Sbjct: 279 AALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTDID 338 Query: 360 AACGQLKSLS-KRIPKVPRQEMQITG 384 AACGQL+S KR+ R + + Sbjct: 339 AACGQLRSKQIKRVGVRERMKQKQAA 364 >gi|302386502|ref|YP_003822324.1| radical SAM enzyme, Cfr family [Clostridium saccharolyticum WM1] gi|302197130|gb|ADL04701.1| radical SAM enzyme, Cfr family [Clostridium saccharolyticum WM1] Length = 350 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 123/365 (33%), Positives = 206/365 (56%), Gaps = 29/365 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K + + E+L + IG R Q+++W++ + DF M+++ ++ Sbjct: 1 MEKIDIKSLNMEQLTAYVAAIG----EKTFRAKQLYEWMHQKLAADFNEMTNLPNSLKET 56 Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L Q + IV+EKIS DGTRK+L + IE+V + K ++C+SSQV Sbjct: 57 LFQQTELTSLAIVEEKISNIDGTRKYLFALSDGNV-----IESVLMKYKHGNSVCISSQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC + L RNL+ E+L Q+ + G+ ++SN+ Sbjct: 112 GCRMGCRFCASTLDGLERNLSPSEMLDQIYRIQKNTGE-----------------RVSNV 154 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 V+MG GEPL N+D++ + + + +D GL+ S+R IT+ST G VP I ++ EE + + LA+ Sbjct: 155 VVMGSGEPLDNYDHLVQFVRLLTDENGLNISQRNITVSTCGIVPGILKLAEEDLQITLAL 214 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++++R L+P+ ++PL+ ++DAC+ Y + R+TFEY ++ G+ND+ ++A Sbjct: 215 SLHAPNDEVRKTLMPVANRFPLKDVLDACQTYFEKTGR-RLTFEYSLVSGVNDNLKEASA 273 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L +LKG +NLIP NP ++ SD+K I F ++++G + IR G DI A Sbjct: 274 LAALLKGQHGHVNLIPVNPIKERNFVQSDRKAIEAFKNLLEKNGINVTIRREMGRDINGA 333 Query: 362 CGQLK 366 CGQL+ Sbjct: 334 CGQLR 338 >gi|327489556|gb|EGF21349.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1058] Length = 362 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 128/373 (34%), Positives = 209/373 (56%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+E+ E G + R SQIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQEMIEWAEAQG----EKKFRASQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + ++S+IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+SLH Sbjct: 161 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +NDLR ++ INR +P+E L A +Y +N R+TFEY+ML +ND +A L + Sbjct: 221 APNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEEAKELAE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKRDR 352 >gi|324990694|gb|EGC22630.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK353] gi|324993429|gb|EGC25349.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK405] gi|327461703|gb|EGF08034.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1] Length = 362 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 128/373 (34%), Positives = 208/373 (55%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+E+ E G + R SQIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQEMIEWAEAQG----EKKFRASQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + ++S+IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+SLH Sbjct: 161 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +NDLR ++ INR +P+E L A +Y +N R+TFEY+ML +ND A L + Sbjct: 221 APNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKRDR 352 >gi|47094708|ref|ZP_00232323.1| conserved hypothetical protein TIGR00048 [Listeria monocytogenes str. 1/2a F6854] gi|224500691|ref|ZP_03669040.1| hypothetical protein LmonF1_13881 [Listeria monocytogenes Finland 1988] gi|254900292|ref|ZP_05260216.1| hypothetical protein LmonJ_10775 [Listeria monocytogenes J0161] gi|254911154|ref|ZP_05261166.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254935482|ref|ZP_05267179.1| 23S rRNA methyltransferase [Listeria monocytogenes F6900] gi|255026212|ref|ZP_05298198.1| hypothetical protein LmonocytFSL_07400 [Listeria monocytogenes FSL J2-003] gi|47016848|gb|EAL07766.1| conserved hypothetical protein TIGR00048 [Listeria monocytogenes str. 1/2a F6854] gi|258608058|gb|EEW20666.1| 23S rRNA methyltransferase [Listeria monocytogenes F6900] gi|293589079|gb|EFF97413.1| conserved hypothetical protein [Listeria monocytogenes J2818] Length = 367 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 135/386 (34%), Positives = 218/386 (56%), Gaps = 27/386 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K S+ G+ L E L G + R +Q+W W+Y + ++ F+ MS++ +E L Sbjct: 1 MEKSSIYGLTWTNLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +F + E + S DGT K+L + + IETV + ++ ++CV++QVG Sbjct: 57 LTANFVMNTLEEQVVQESADGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+LTA EI+ Q++ + + ++ ++S++V Sbjct: 112 CNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHY------------LDGRNLEERVSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242 +MG+GEP N+DNV L + + GL+ R IT+STSG P I E+ V LAIS Sbjct: 160 VMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR ++ IN+ Y +E L++A +Y +N RITFEY+MLKG+ND ++AL L Sbjct: 220 LHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTNR-RITFEYIMLKGVNDHKKEALEL 278 Query: 303 IKIL--KGIPAKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 +L A +NLIP+NP +Y S ++D++ F + +K++G + IR G DI Sbjct: 279 AALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTDID 338 Query: 360 AACGQLKSLS-KRIPKVPRQEMQITG 384 AACGQL+S KR+ R + + Sbjct: 339 AACGQLRSKQIKRVGVRERMKQKQAA 364 >gi|125717485|ref|YP_001034618.1| radical SAM family Fe-S oxidoreductase [Streptococcus sanguinis SK36] gi|262282762|ref|ZP_06060530.1| cfr family radical SAM enzyme [Streptococcus sp. 2_1_36FAA] gi|205829909|sp|A3CLL3|RLMN_STRSV RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|125497402|gb|ABN44068.1| Fe-S-cluster redox enzyme/radical SAM enzyme, Cfr family, putative [Streptococcus sanguinis SK36] gi|262262053|gb|EEY80751.1| cfr family radical SAM enzyme [Streptococcus sp. 2_1_36FAA] gi|325697044|gb|EGD38931.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK160] gi|327458790|gb|EGF05138.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1057] gi|327473422|gb|EGF18842.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK408] gi|328945604|gb|EGG39755.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1087] gi|332362856|gb|EGJ40649.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK49] Length = 362 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 127/373 (34%), Positives = 208/373 (55%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+E+ E G + R +QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQEMIEWAEAQG----EKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + ++S+IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+SLH Sbjct: 161 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +NDLR ++ INR +P+E L A +Y +N R+TFEY+ML +ND A L + Sbjct: 221 APNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKRDR 352 >gi|322385917|ref|ZP_08059558.1| cfr family radical SAM enzyme [Streptococcus cristatus ATCC 51100] gi|321270032|gb|EFX52951.1| cfr family radical SAM enzyme [Streptococcus cristatus ATCC 51100] Length = 362 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 127/373 (34%), Positives = 207/373 (55%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + REE+ E G + R +QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTREEMIEWAEAQG----EKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L + IETV + + ++CV++QVGC+ Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELSDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + ++S+IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+SLH Sbjct: 161 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +NDLR ++ INR +P+E L A +Y +N R+TFEY+ML +ND A L + Sbjct: 221 APNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKRDR 352 >gi|16802525|ref|NP_464010.1| ribosomal RNA large subunit methyltransferase N [Listeria monocytogenes EGD-e] gi|224502216|ref|ZP_03670523.1| hypothetical protein LmonFR_06797 [Listeria monocytogenes FSL R2-561] gi|81592923|sp|Q8Y9P2|RLMN_LISMO RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|16409858|emb|CAC98561.1| lmo0482 [Listeria monocytogenes EGD-e] Length = 367 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 135/386 (34%), Positives = 218/386 (56%), Gaps = 27/386 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K S+ G+ L E L G + R +Q+W W+Y + ++ F+ MS++ +E L Sbjct: 1 MEKSSIYGLTWTNLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +F + E + S DGT K+L + + IETV + ++ ++CV++QVG Sbjct: 57 LTANFVMNTLEEQVVQESTDGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+LTA EI+ Q++ + + ++ ++S++V Sbjct: 112 CNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHY------------LDGRNLEERVSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242 +MG+GEP N+DNV L + + GL+ R IT+STSG P I E+ V LAIS Sbjct: 160 VMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR ++ IN+ Y +E L++A +Y +N RITFEY+MLKG+ND ++AL L Sbjct: 220 LHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTNR-RITFEYIMLKGVNDHKKEALEL 278 Query: 303 IKIL--KGIPAKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 +L A +NLIP+NP +Y S ++D++ F + +K++G + IR G DI Sbjct: 279 AALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTDID 338 Query: 360 AACGQLKSLS-KRIPKVPRQEMQITG 384 AACGQL+S KR+ R + + Sbjct: 339 AACGQLRSKQIKRVGVRERMKQKQAA 364 >gi|327469049|gb|EGF14521.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK330] Length = 362 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 127/373 (34%), Positives = 209/373 (56%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+E+ E G + R +QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQEMIEWAEAQG----EKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F++ + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DQFAVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + ++S+IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+SLH Sbjct: 161 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +NDLR ++ INR +P+E L A +Y +N R+TFEY+ML +ND A L + Sbjct: 221 APNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKRDR 352 >gi|331082368|ref|ZP_08331494.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae bacterium 6_1_63FAA] gi|330400854|gb|EGG80455.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae bacterium 6_1_63FAA] Length = 348 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 117/365 (32%), Positives = 199/365 (54%), Gaps = 29/365 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +++ + + +L+ ++++G R QI++W++ + F MS++S +R Sbjct: 1 MEQIEIKSLSLMQLKNTMIEMG----EKAFRAKQIYEWLHQKQAESFDEMSNLSAALREK 56 Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L + + ++++ + S DGT+K+L P + +E+V + K ++C+SSQV Sbjct: 57 LKERCVLTTLKMLEVQTSKIDGTQKYLFALPDGNV-----VESVLMKYKHGNSVCISSQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC + RNL E+L Q+ + L G+ ++SN+ Sbjct: 112 GCKMGCRFCASTIGGWTRNLLPSEMLEQIYRIQKLSGE-----------------RVSNV 154 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 V+MG GEPL N+DN+ + + + +D GL S+R +T+ST G VP + + EE + + LAI Sbjct: 155 VVMGTGEPLDNYDNLLQFIRLLTDENGLHISQRNVTVSTCGIVPKMYELAEENLQITLAI 214 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA + R L+PI KY + +++ACR+Y + R+TFEY ++ G ND+ DA Sbjct: 215 SLHASNQAKRAELMPIANKYSINEVLEACRNYFEKTGR-RLTFEYSLVGGKNDTKEDAEE 273 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++KG+ +NLIP NP +Y+ SD+K I F +++ + IR G DI A Sbjct: 274 LAHLIKGLNCHVNLIPVNPIKERDYVQSDKKVIENFKNKLEKYQINVTIRREMGRDIDGA 333 Query: 362 CGQLK 366 CGQL+ Sbjct: 334 CGQLR 338 >gi|307708474|ref|ZP_07644939.1| radical SAM enzyme, Cfr family [Streptococcus mitis NCTC 12261] gi|307615390|gb|EFN94598.1| radical SAM enzyme, Cfr family [Streptococcus mitis NCTC 12261] Length = 361 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 124/373 (33%), Positives = 211/373 (56%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+ ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 EQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + ++S+IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N++NV + +D G++ R IT+STSG I E + V LA+SLH Sbjct: 161 GIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L + Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKRDR 352 >gi|254248069|ref|ZP_04941390.1| hypothetical protein BCPG_02893 [Burkholderia cenocepacia PC184] gi|124872845|gb|EAY64561.1| hypothetical protein BCPG_02893 [Burkholderia cenocepacia PC184] Length = 379 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 139/378 (36%), Positives = 206/378 (54%), Gaps = 12/378 (3%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +L+ E L +G R Q+ +WI+ DF GM+D+++ + Sbjct: 1 MTSETSVNLLDFDAEGLVAYCGSLG----EKPFRAKQLQRWIHQYNAGDFDGMTDLAKSL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L SI+ P+I + +S DGTRKWL+ +G +ETV+IPE++RGTLCVSS Sbjct: 57 REKLKGRASIVMPDIASDHVSTDGTRKWLI-----DVGNGNAVETVFIPEETRGTLCVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC++ C FC TG Q RNL+ EI+ Q+ +A L G R ++ Sbjct: 112 QAGCAVNCRFCSTGKQGFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNG---KAERVVT 168 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+ N+ V ++ + D S+RR+TLSTSG VP + R+G E+ V LA Sbjct: 169 NVSDDEHERAALNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALA 228 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++ LR+ LVP+N+KYPL L+ AC+ Y ++ ITFEY ML G+ND+ A Sbjct: 229 VSLHAPNDALRDELVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHAR 288 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L+ + + +P K NLIPFNP+P + S + I F++ + +G + +R RG DI A Sbjct: 289 ELLAVTRDVPCKFNLIPFNPFPESGLIRSKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDA 348 Query: 361 ACGQLKSLSKRIPKVPRQ 378 ACGQL K ++ + Sbjct: 349 ACGQLAGAVKDRTRLAER 366 >gi|315221970|ref|ZP_07863881.1| radical SAM enzyme, Cfr family [Streptococcus anginosus F0211] gi|315188936|gb|EFU22640.1| radical SAM enzyme, Cfr family [Streptococcus anginosus F0211] Length = 367 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 128/373 (34%), Positives = 209/373 (56%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R++L + + G + R +QIW+W+Y + ++ F M++IS+ + L Sbjct: 9 KPSIYSLTRQDLIDWVESQG----EKKFRATQIWEWLYRKRVQSFTEMTNISKGLLAKLE 64 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 65 DEFVVNPLKQRVVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 119 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + G ++S+IV+M Sbjct: 120 IGCTFCASGLIKKQRDLNNGEIMSQIMLVQKYFDE------------RGQGERVSHIVVM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+SLH Sbjct: 168 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 227 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L + Sbjct: 228 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 286 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA Sbjct: 287 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGINCVVRQEHGTDIDAA 346 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + K Sbjct: 347 CGQLRSNTMKKDK 359 >gi|270292529|ref|ZP_06198740.1| radical SAM enzyme, Cfr family [Streptococcus sp. M143] gi|270278508|gb|EFA24354.1| radical SAM enzyme, Cfr family [Streptococcus sp. M143] Length = 361 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 124/373 (33%), Positives = 211/373 (56%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+ ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 EQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + ++S+IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N++NV + +D G++ R IT+STSG I E + V LA+SLH Sbjct: 161 GIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L + Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGIEQALELAE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKKGINCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKRDR 352 >gi|323143782|ref|ZP_08078450.1| 23S rRNA m2A2503 methyltransferase [Succinatimonas hippei YIT 12066] gi|322416495|gb|EFY07161.1| 23S rRNA m2A2503 methyltransferase [Succinatimonas hippei YIT 12066] Length = 357 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 150/370 (40%), Positives = 209/370 (56%), Gaps = 21/370 (5%) Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69 + + +EL++ + +G R +Q KWIY G+ DF M++I +++R L + Sbjct: 1 MNLGVDELKDFAVSLG----EKPFRATQFLKWIYQYGVTDFDLMTNIKKDLREKLKEIAC 56 Query: 70 IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129 I PEIV E+ S DGT KW L IG +ETV IPE+ R TLC+S+QVGC + C+ Sbjct: 57 IKAPEIVTEQRSSDGTVKWAL-----DIGDGQLVETVLIPEEGRNTLCISTQVGCPVKCA 111 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 FC TG RNL+ EI+ QV A S +G + ISN+VMMGMGE Sbjct: 112 FCRTGASGFNRNLSVSEIIGQVWRAASRVG----------FSQNEEQKPISNVVMMGMGE 161 Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSND 249 PL N D V K I + + SKRR+T+STSG P I ++ ++ V LA+SLHA +++ Sbjct: 162 PLYNVDAVLKVTEILLNDNAFALSKRRVTISTSGVAPIIDKIAGKVDVALALSLHAPNDE 221 Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILK 307 LR++LVP+N+KY +++++ + R+Y SNA + T EYV+L INDS A L ++LK Sbjct: 222 LRDVLVPLNKKYKIDVVLKSVRNYLSKSNANCGKATIEYVLLDHINDSTDQAEELARLLK 281 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 P KINLIPFNP E+ + F + + GY+ RT RG DI AACGQL Sbjct: 282 DTPCKINLIPFNPHEQSEFKRPSNSRVDRFYKVLTGHGYTVMTRTTRGDDIAAACGQLAG 341 Query: 368 LSKRIPKVPR 377 K R Sbjct: 342 QVKDKIAKNR 351 >gi|251782933|ref|YP_002997236.1| ribosomal RNA large subunit methyltransferase N [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391563|dbj|BAH82022.1| radical SAM family enzyme [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323127736|gb|ADX25033.1| radical SAM superfamily protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 360 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 125/373 (33%), Positives = 203/373 (54%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + RE+L + G + R +QIW W+Y + ++ F M++IS++ +L Sbjct: 2 KPSIYSLTREDLIAWAIDHG----QKKFRATQIWDWLYKKRVQSFDDMTNISKDFIAILK 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 ENFCVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L + EI Q++L + + ++S++V+M Sbjct: 113 IGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDE------------RGQDERVSHVVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+ NV L +D GL+ R IT+STSG I E + V LA+SLH Sbjct: 161 GIGEPFDNYQNVMSFLRTINDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +NDLR+ ++ INR +PLE L A +Y +N R+TFEY+ML +ND A L Sbjct: 221 APNNDLRSSIMRINRSFPLEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAQELAD 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 + K I + +NLIP+NP + Y S ++ + F + +K++G + +R G DI AA Sbjct: 280 LTKNIRKLSYVNLIPYNPVSEHDQYSRSPKERVSAFYDVLKKNGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKKDR 352 >gi|325694144|gb|EGD36062.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK150] Length = 362 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 127/370 (34%), Positives = 207/370 (55%), Gaps = 26/370 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+E+ E G + R +QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQEMIEWAEAQG----EKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + ++S+IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+SLH Sbjct: 161 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +NDLR ++ INR +P+E L A +Y +N R+TFEY+ML +ND A L + Sbjct: 221 APNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKR 371 CGQL+S + + Sbjct: 340 CGQLRSNTMK 349 >gi|290580974|ref|YP_003485366.1| hypothetical protein SmuNN2025_1448 [Streptococcus mutans NN2025] gi|254997873|dbj|BAH88474.1| hypothetical protein [Streptococcus mutans NN2025] Length = 361 Score = 421 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 131/373 (35%), Positives = 211/373 (56%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R +L ++ G + R +QIW W+Y + ++ F+ M+++S++ LLN Sbjct: 2 KPSIYSLTRNDLIAWTIEHG----EKKFRATQIWDWLYRKRVQSFEEMTNLSKDFIALLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 ENFLVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI Q++L + + G +IS++V+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEITAQIMLVQKYFDE------------RGQGERISHVVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+DNV K L +D GL+ R IT+STSG I E + V LAISLH Sbjct: 161 GIGEPFDNYDNVLKFLRTINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAISLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ INR +PLE L A +Y +N R+TFEY+ML G+ND+P +A L Sbjct: 221 APNNELRSSIMRINRSFPLEKLFAAIEYYIETTNR-RVTFEYIMLNGVNDNPENAQELAD 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 + K I + +NLIP+NP + Y S ++ + F + +K++G + +R G DI AA Sbjct: 280 LTKKIRKLSYVNLIPYNPVTEHDQYSRSPKERVDAFYDVLKKNGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKRDR 352 >gi|46581308|ref|YP_012116.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio vulgaris str. Hildenborough] gi|81404173|sp|Q727F1|RLMN_DESVH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|46450729|gb|AAS97376.1| radical SAM enzyme, Cfr family [Desulfovibrio vulgaris str. Hildenborough] gi|311234971|gb|ADP87825.1| radical SAM enzyme, Cfr family [Desulfovibrio vulgaris RCH1] Length = 364 Score = 421 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 139/367 (37%), Positives = 202/367 (55%), Gaps = 27/367 (7%) Query: 7 ESLIGMMREELEEAL-LKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 ++ + EELE + ++G P R R Q+W+W++ + R F M+++S+ R L Sbjct: 2 TDILNLTYEELEAFMTAELGEP----RFRARQVWQWLWQKCARSFDEMTNVSKATRARLA 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-----TLCVSS 120 + I +PE+ + S DGT K+LLR + +ETV IP SR T C+S Sbjct: 58 EKAVITWPEVETVQKSADGTTKFLLRLADGAL-----VETVLIPSASREGTLRITQCLSC 112 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC++ C+FC TGT RN+T EIL QVL+AR+ LGD I + Sbjct: 113 QVGCAMGCTFCSTGTMGFERNMTMGEILGQVLVARAHLGDSRPDHPI-----------LR 161 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+V MGMGEPL N + V +SL +D GLSFS RRIT+ST G + +GE LA Sbjct: 162 NLVFMGMGEPLLNLNEVMRSLRTLNDEFGLSFSPRRITVSTCGIEKGLRELGESGLAFLA 221 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA + ++R ++P + L+ LI A YP L R+TFEY++L G+ND A Sbjct: 222 VSLHAPNQEIRKRIMPKAAHWHLDDLITALESYP-LKTRERVTFEYLLLGGVNDGIEHAR 280 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L++++ K+NLI +NP G Y + I+ F + + ++ IR +G DI A Sbjct: 281 ELVRLVSRTKGKLNLIVYNPAEGDPYDAPTPERILAFEQYLWSKNITAIIRKSKGQDIKA 340 Query: 361 ACGQLKS 367 ACGQLK+ Sbjct: 341 ACGQLKA 347 >gi|324995259|gb|EGC27171.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK678] Length = 362 Score = 421 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 127/373 (34%), Positives = 208/373 (55%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+E+ E G + R +QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQEMIEWAEAQG----EKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DQFVVNPLKQRIVQGSADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + ++S+IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+SLH Sbjct: 161 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +NDLR ++ INR +P+E L A +Y +N R+TFEY+ML +ND A L + Sbjct: 221 APNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKRDR 352 >gi|120601511|ref|YP_965911.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio vulgaris DP4] gi|205829747|sp|A1VAL8|RLMN_DESVV RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|120561740|gb|ABM27484.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfovibrio vulgaris DP4] Length = 364 Score = 421 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 139/367 (37%), Positives = 202/367 (55%), Gaps = 27/367 (7%) Query: 7 ESLIGMMREELEEAL-LKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 ++ + EELE + ++G P R R Q+W+W++ + R F M+++S+ R L Sbjct: 2 TDILNLTYEELEAFMTAELGEP----RFRARQVWQWLWQKCARSFDEMTNVSKATRARLA 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-----TLCVSS 120 + I +PE+ + S DGT K+LLR + +ETV IP SR T C+S Sbjct: 58 EKAVITWPEVETVQKSADGTTKFLLRLADGAL-----VETVLIPSASREGTLRITQCLSC 112 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC++ C+FC TGT RN+T EIL QVL+AR+ LGD I + Sbjct: 113 QVGCAMGCTFCSTGTMGFERNMTMGEILGQVLVARAHLGDSRPDHPI-----------LR 161 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+V MGMGEPL N + V +SL +D GLSFS RRIT+ST G + +GE LA Sbjct: 162 NLVFMGMGEPLLNLNEVMRSLRTLNDEFGLSFSPRRITVSTCGIEKGLRELGESGLAFLA 221 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA + ++R ++P + L+ LI A YP L R+TFEY++L G+ND A Sbjct: 222 VSLHAPNQEIRKRIMPKAAHWHLDDLITALESYP-LKTRERVTFEYLLLGGVNDGIEHAR 280 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L++++ K+NLI +NP G Y + I+ F + + ++ IR +G DI A Sbjct: 281 ELVRLVSRTKGKLNLIVYNPAEGDPYDAPTPERILAFEQYLWSKNITAIIRKSKGQDIKA 340 Query: 361 ACGQLKS 367 ACGQLK+ Sbjct: 341 ACGQLKA 347 >gi|157151429|ref|YP_001449957.1| ribosomal RNA large subunit methyltransferase N [Streptococcus gordonii str. Challis substr. CH1] gi|205829902|sp|A8AVZ7|RLMN_STRGC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|157076223|gb|ABV10906.1| radical SAM enzyme, Cfr family [Streptococcus gordonii str. Challis substr. CH1] Length = 362 Score = 421 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 127/373 (34%), Positives = 208/373 (55%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+E+ E G + R +QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQEMIEWAEAQG----EKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + ++S+IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVSQIMLVQKYFDE------------RGQDERVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+SLH Sbjct: 161 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +NDLR ++ INR +P+E L A +Y +N R+TFEY+ML +ND A L + Sbjct: 221 APNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA Sbjct: 280 LLKNIRKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKRDR 352 >gi|323701797|ref|ZP_08113468.1| radical SAM enzyme, Cfr family [Desulfotomaculum nigrificans DSM 574] gi|323533333|gb|EGB23201.1| radical SAM enzyme, Cfr family [Desulfotomaculum nigrificans DSM 574] Length = 352 Score = 421 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 131/372 (35%), Positives = 201/372 (54%), Gaps = 29/372 (7%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 N K +L + E++ + ++G R QI +W+ +G+ F M++IS+E++ Sbjct: 4 NTKSKLNLRDLTLSEMKRLMTELG----EKPFRAIQICQWVLAKGVTSFDQMTNISKELQ 59 Query: 62 HLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 L I +++ + S G T K+LL + +E V + + CVS+ Sbjct: 60 AKLADVAYISQTKMLARQQSARGDTIKYLL-----GLADGHAVECVLMKHSYGNSACVST 114 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC + C FC + + LVR+LT EI QVL + G+ ++S Sbjct: 115 QVGCRMGCMFCASTIEGLVRSLTPGEIYDQVLGIQQDTGE-----------------RVS 157 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239 +IV+MG GEPL N+DNV K L + GL+ R ITLST G VP + ++ +++ + L Sbjct: 158 HIVIMGSGEPLDNYDNVIKFLENVNADYGLNIGYRHITLSTCGLVPKLKQLAFKKLPITL 217 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA +++LRN LVPINR+Y L LI ACR Y ++ RITFEY +LK INDS A Sbjct: 218 AVSLHAPNDELRNQLVPINRRYSLAELIPACREYTEITGR-RITFEYALLKEINDSEEHA 276 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L+ +LKG+ +NLIP NP + + + + F I+++G + +R G DI Sbjct: 277 RQLVNLLKGMLCHVNLIPANPVEEKGFERTPPEKVERFRNIIEKAGLAVTVRRELGTDID 336 Query: 360 AACGQLKSLSKR 371 AACGQL+ ++ Sbjct: 337 AACGQLRRRFQK 348 >gi|312867068|ref|ZP_07727278.1| 23S rRNA m2A2503 methyltransferase [Streptococcus parasanguinis F0405] gi|311097197|gb|EFQ55431.1| 23S rRNA m2A2503 methyltransferase [Streptococcus parasanguinis F0405] Length = 362 Score = 421 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 126/373 (33%), Positives = 210/373 (56%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+++ + + G + R +QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQDMIDWAEENG----EKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + ++S+IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVSQIMLVQKYFDE------------RGQDERVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+SLH Sbjct: 161 GIGEPFDNYDNVLKFIRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +NDLR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L + Sbjct: 221 APNNDLRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKQGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKRDR 352 >gi|85859749|ref|YP_461951.1| radical SAM protein [Syntrophus aciditrophicus SB] gi|123752486|sp|Q2LUM5|RLMN_SYNAS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|85722840|gb|ABC77783.1| radical SAM family enzyme [Syntrophus aciditrophicus SB] Length = 348 Score = 421 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 149/372 (40%), Positives = 219/372 (58%), Gaps = 27/372 (7%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 + + ++ M EE+E + +G + R QI KW+Y +G + F M+ +S+ VR Sbjct: 2 HMNRINIRDMSLEEIESFISSLG----KEKYRARQIMKWLYSQGAKSFDEMTTLSRAVRD 57 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 LN+ I PEI + S DGTRK L R IE+V IP K T C+S+QV Sbjct: 58 QLNEMACITLPEIARVQQSSDGTRKILFRLQDNSF-----IESVLIPGKHNWTACISTQV 112 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC+T Q RNL EI Q+ + + L + P +I NI Sbjct: 113 GCHMGCRFCFTARQGFRRNLKPSEITGQLTMLQFYLPEGP---------------EIKNI 157 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL N+ N K++ I + GL FS R+ITLSTSG P I ++G ++ + LAIS Sbjct: 158 VMMGMGEPLANYRNTLKAIRIITSDYGLGFSTRKITLSTSGITPMIEQLGRDLCINLAIS 217 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 L+A ++ +R+ L+P+NRKYPL+ L+ ACR+YP + R +TFEY+++ G+N SP A L Sbjct: 218 LNAPTDSIRSELMPVNRKYPLDRLLQACRNYP-MPGRRMLTFEYILIDGVNSSPAHAEML 276 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LKGI K+NLI FN +P C + ++ ++ F + + + Y++ IR RG DILAAC Sbjct: 277 CRLLKGIRCKLNLIRFNEFPDCPFKTPSEETVLAFQQILVKHHYTAIIRASRGRDILAAC 336 Query: 363 GQL--KSLSKRI 372 GQL K+L +++ Sbjct: 337 GQLSGKALEEKL 348 >gi|309800021|ref|ZP_07694219.1| radical SAM enzyme, Cfr family [Streptococcus infantis SK1302] gi|308116341|gb|EFO53819.1| radical SAM enzyme, Cfr family [Streptococcus infantis SK1302] Length = 357 Score = 421 bits (1083), Expect = e-116, Method: Composition-based stats. Identities = 124/373 (33%), Positives = 210/373 (56%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+ ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQGMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLISKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + ++S+IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N++NV + +D G++ R IT+STSG I E + V LA+SLH Sbjct: 161 GIGEPFDNYNNVLNFIRTINDDKGMAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L + Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKKGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKRDR 352 >gi|289167665|ref|YP_003445934.1| hypothetical protein smi_0819 [Streptococcus mitis B6] gi|288907232|emb|CBJ22067.1| conserved hypothetical protein [Streptococcus mitis B6] Length = 361 Score = 421 bits (1083), Expect = e-116, Method: Composition-based stats. Identities = 124/373 (33%), Positives = 210/373 (56%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+ ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + ++S+IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N++NV + +D G++ R IT+STSG I E + V LA+SLH Sbjct: 161 GIGEPFDNYNNVLNFIRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L + Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKRDR 352 >gi|313890464|ref|ZP_07824093.1| 23S rRNA m2A2503 methyltransferase [Streptococcus pseudoporcinus SPIN 20026] gi|313121166|gb|EFR44276.1| 23S rRNA m2A2503 methyltransferase [Streptococcus pseudoporcinus SPIN 20026] Length = 361 Score = 421 bits (1083), Expect = e-116, Method: Composition-based stats. Identities = 126/373 (33%), Positives = 205/373 (54%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+EL + + G + R +QIW W+Y + ++ F+ M++IS++ LLN Sbjct: 2 KPSIYSLTRDELIDWAIANG----QKKFRATQIWDWLYKKRVQSFEEMTNISKDFIALLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 EKFCLNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L + EI Q++L + + ++S++V+M Sbjct: 113 IGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDE------------RGQDERVSHVVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+ NV L +D GL+ R IT+STSG I E + V LA+SLH Sbjct: 161 GIGEPFDNYKNVMTFLRTINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ INR +PLE L A +Y +N R+TFEY+ML +ND A L Sbjct: 221 APNNELRSSIMRINRSFPLEKLFTAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAD 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 + K I + +NLIP+NP + Y S ++ + F + +K++G + +R G DI AA Sbjct: 280 LTKNIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYDILKKNGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKKDR 352 >gi|315613373|ref|ZP_07888282.1| cfr family radical SAM enzyme [Streptococcus sanguinis ATCC 49296] gi|315314608|gb|EFU62651.1| cfr family radical SAM enzyme [Streptococcus sanguinis ATCC 49296] Length = 361 Score = 421 bits (1083), Expect = e-116, Method: Composition-based stats. Identities = 124/373 (33%), Positives = 210/373 (56%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+ ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+ + LN Sbjct: 2 KPSIYSLTRQAMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKGLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 EQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + ++S+IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N++NV + +D G++ R IT+STSG I E + V LA+SLH Sbjct: 161 GIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L + Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKKGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKRDR 352 >gi|322375441|ref|ZP_08049954.1| radical SAM enzyme, Cfr family [Streptococcus sp. C300] gi|321279704|gb|EFX56744.1| radical SAM enzyme, Cfr family [Streptococcus sp. C300] Length = 361 Score = 421 bits (1083), Expect = e-116, Method: Composition-based stats. Identities = 124/373 (33%), Positives = 210/373 (56%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+ ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + ++S+IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N++NV + +D G++ R IT+STSG I E + V LA+SLH Sbjct: 161 GIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L + Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIEKTNR-RVTFEYIMLNEVNDGVEQALELAE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKKGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKRDR 352 >gi|306825018|ref|ZP_07458361.1| cfr family radical SAM enzyme [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432845|gb|EFM35818.1| cfr family radical SAM enzyme [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 361 Score = 421 bits (1083), Expect = e-116, Method: Composition-based stats. Identities = 124/373 (33%), Positives = 211/373 (56%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+ ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+ + LN Sbjct: 2 KPSIYSLTRQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKGLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 EQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + ++S+IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N++NV + +D G++ R IT+STSG I E + V LA+SLH Sbjct: 161 GIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L + Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPRERVMAFYDTLKKNGINCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKRDR 352 >gi|322412262|gb|EFY03170.1| radical SAM superfamily protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 360 Score = 421 bits (1083), Expect = e-116, Method: Composition-based stats. Identities = 125/373 (33%), Positives = 203/373 (54%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + RE+L + G + R +QIW W+Y + ++ F M++IS++ +L Sbjct: 2 KPSIYSLTREDLIAWAIDHG----QKKFRATQIWDWVYKKRVQSFDDMTNISKDFIAILK 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 ENFCVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L + EI Q++L + + ++S++V+M Sbjct: 113 IGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDE------------RGQDERVSHVVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+ NV L +D GL+ R IT+STSG I E + V LA+SLH Sbjct: 161 GIGEPFDNYQNVMSFLRTINDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +NDLR+ ++ INR +PLE L A +Y +N R+TFEY+ML +ND A L Sbjct: 221 APNNDLRSSIMRINRSFPLEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAQELAD 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 + K I + +NLIP+NP + Y S ++ + F + +K++G + +R G DI AA Sbjct: 280 LTKNIRKLSYVNLIPYNPVSEHDQYSRSPKERVSAFYDVLKKNGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKKDR 352 >gi|325690223|gb|EGD32227.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK115] Length = 362 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 127/373 (34%), Positives = 208/373 (55%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+E+ E G + R +QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQEMIEWAEAQG----EKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIATLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + ++S+IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+SLH Sbjct: 161 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +NDLR ++ INR +P+E L A +Y +N R+TFEY+ML +ND A L + Sbjct: 221 APNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDILKKNGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKRDR 352 >gi|322376321|ref|ZP_08050814.1| radical SAM enzyme, Cfr family [Streptococcus sp. M334] gi|321282128|gb|EFX59135.1| radical SAM enzyme, Cfr family [Streptococcus sp. M334] Length = 361 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 124/373 (33%), Positives = 210/373 (56%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+ ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + ++S+IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N++NV + +D G++ R IT+STSG I E + V LA+SLH Sbjct: 161 GIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L + Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKRDR 352 >gi|294661183|ref|YP_003573058.1| hypothetical protein Aasi_1616 [Candidatus Amoebophilus asiaticus 5a2] gi|227336333|gb|ACP20930.1| hypothetical protein Aasi_1616 [Candidatus Amoebophilus asiaticus 5a2] Length = 339 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 180/345 (52%), Positives = 236/345 (68%), Gaps = 14/345 (4%) Query: 29 RHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKW 88 + R Q+W+W+Y G + F M+++ R L H+S+ + IS D T KW Sbjct: 5 KEPAFRADQVWRWVYQLGAQSFSTMNNVPLLFRETLGLHYSLERTQEHQVLISKDKTIKW 64 Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 LL F E+ETV+IPE++R TLC+SSQVGC+L C FC+TGTQ LVRNL A EI+ Sbjct: 65 LLAFSD-----ANEVETVWIPEQTRSTLCISSQVGCTLNCKFCHTGTQPLVRNLRAGEIV 119 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 Q+L A+ +L D+P + RKI+NIVMMGMGEPL N++ V K++ I Sbjct: 120 AQLLHAKDVLQDWPS---------HAPTRKINNIVMMGMGEPLLNYEQVAKAIQIMMHPQ 170 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 GL S+++ITLSTSG VP I R EE+GV LAISLHAV+++LRN LVPIN+KYP+ L+ Sbjct: 171 GLDISRKKITLSTSGIVPQIKRCAEELGVNLAISLHAVTDELRNHLVPINKKYPINELLQ 230 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 ACR Y ++ R+ITFEYVMLKG+NDSP DA L+ ++KGIPAKINLIPFNPWPG E C Sbjct: 231 ACRDYASITGCRKITFEYVMLKGVNDSPADAKKLVDLIKGIPAKINLIPFNPWPGTELEC 290 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIP 373 S + +I F+ I+++GY +P+RTPRG DI+AACGQLKS S + Sbjct: 291 STESNIKQFAAIIEKAGYIAPVRTPRGEDIMAACGQLKSASIKAK 335 >gi|319943743|ref|ZP_08018024.1| cfr family radical SAM enzyme [Lautropia mirabilis ATCC 51599] gi|319742976|gb|EFV95382.1| cfr family radical SAM enzyme [Lautropia mirabilis ATCC 51599] Length = 460 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 150/386 (38%), Positives = 212/386 (54%), Gaps = 19/386 (4%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+G+ R+ + +G R Q+ +W++ RG+ D+ M+D+++ R L Sbjct: 64 VNLLGLDRQGFLDFCGGMG----EKPFRAHQLMRWVHQRGVADWSAMTDLARSFRERLQD 119 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I P ++ + + D TRKWL +G +E V+IPE RGTLCVSSQ GC++ Sbjct: 120 KALIQAPSVLKDHTAPDATRKWLF-----DVGAGNAVEAVFIPEARRGTLCVSSQAGCAV 174 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLAR----------SLLGDFPGCEDIEGMVIPSVG 176 CSFC TG Q RNL EIL Q+ LA G + E + Sbjct: 175 NCSFCSTGKQGFSRNLNTAEILGQIWLANQLLRQPGAQPRWGGADDMAQLDEDVDDAGAL 234 Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236 R ISNIV MGMGEPL N++ + +L D G S+RR+T+STSG VP I R+ E+ Sbjct: 235 RPISNIVFMGMGEPLLNYNALLPALRALLDDHGYGLSRRRVTVSTSGVVPLIDRLSEDCP 294 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 V LA+SLHA ++ LR+ LVP+NRKYPL+ L+ AC+ Y ++ ITFEYVMLK INDS Sbjct: 295 VALAVSLHASNDTLRDQLVPLNRKYPLKELLAACQRYLKVAPRDFITFEYVMLKDINDSV 354 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 A L ++ +P K NLIPFNP+P S + I F + + R+G + +R RG Sbjct: 355 AHARELAALVADVPCKFNLIPFNPFPNSGLSRSSDRTIRQFGDVLLRAGIVTTVRRTRGD 414 Query: 357 DILAACGQLKSLSKRIPKVPRQEMQI 382 +I AACGQL ++ + +Q Sbjct: 415 EIDAACGQLAGEVVDRTRLRERTVQF 440 >gi|332361790|gb|EGJ39594.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1056] Length = 362 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 127/373 (34%), Positives = 208/373 (55%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+E+ E G + R +QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQEMIEWAEDQG----EKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIATLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + ++S+IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+SLH Sbjct: 161 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +NDLR ++ INR +P+E L A +Y +N R+TFEY+ML +ND A L + Sbjct: 221 APNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKRDR 352 >gi|322392191|ref|ZP_08065652.1| cfr family radical SAM enzyme [Streptococcus peroris ATCC 700780] gi|321144726|gb|EFX40126.1| cfr family radical SAM enzyme [Streptococcus peroris ATCC 700780] Length = 361 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 124/373 (33%), Positives = 210/373 (56%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+ ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQGMQEWILEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + ++S+IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N++NV + +D G++ R IT+STSG I E + V LA+SLH Sbjct: 161 GIGEPFDNYNNVLNFIRTINDDKGMAIGARHITVSTSGLAHKIRAFANEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L + Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA Sbjct: 280 LLKNIKKLSYVNLIPYNPVTEHDQYSRSPKERVMAFYDTLKKHGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKRDR 352 >gi|328866638|gb|EGG15021.1| putative ribosomal RNA large subunit methyltransferase N [Dictyostelium fasciculatum] Length = 432 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 175/380 (46%), Positives = 252/380 (66%), Gaps = 22/380 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K++LIG+ +EE+E +G+ + R Q+WKWIY +G ++ + ++S++ R +L+ Sbjct: 57 KKNLIGLSKEEIETQFETLGLE----KYRAKQVWKWIYNKGTKNIDHIDNLSKKHRDILS 112 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + ++I + + + +S DGTRK L+ F E+ETV+IPE++RGTLC+SSQVGC+ Sbjct: 113 EVYNIDHGVVNKDSLSIDGTRKLLVEF------KGDEVETVFIPERNRGTLCISSQVGCT 166 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 C+FC+TGTQKLVRNLTA EI+ QV ARSL+ DF + R ++N+V+M Sbjct: 167 FQCTFCHTGTQKLVRNLTAGEIVSQVFTARSLMHDFGPTTN---------KRLLTNVVLM 217 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLH 244 G GEPL N+ NV K+L I +D G+S SK +ITLSTSG VP I R+G++ + LAISLH Sbjct: 218 GQGEPLYNYRNVSKALKILTDGEGISISKSKITLSTSGVVPLIERLGQDFPGIGLAISLH 277 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N R+ +VPIN+++P+E L+ AC ++ RIT EYVMLKGIND+ +DA NLI+ Sbjct: 278 ASNNKTRSEIVPINQQWPIEELVQACINFTQKYTKDRITIEYVMLKGINDAKQDAYNLIQ 337 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 + P+ INLIPFNPWPG Y C+ I +F+ ++R G +R PRG DILAACGQ Sbjct: 338 LASQFPSLINLIPFNPWPGTIYECTPIDQIESFARILERGGLKVTVRQPRGTDILAACGQ 397 Query: 365 LKSLSKRIPK--VPRQEMQI 382 L S S++ +P QE ++ Sbjct: 398 LVSSSQKKKGIIIPEQEGEV 417 >gi|218132885|ref|ZP_03461689.1| hypothetical protein BACPEC_00746 [Bacteroides pectinophilus ATCC 43243] gi|217991758|gb|EEC57762.1| hypothetical protein BACPEC_00746 [Bacteroides pectinophilus ATCC 43243] Length = 360 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 113/361 (31%), Positives = 196/361 (54%), Gaps = 29/361 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 + M E+ E ++ +G + R QI++W++ + + + M+++ +R L Sbjct: 7 DIKSMTPSEVSELIVSLG----DKKFRAKQIYQWMHQKLVASYDEMTNVPAALRQKLAAE 62 Query: 68 FSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + + E V +IS DGTRK+L R + IE+V + ++C+SSQVGC + Sbjct: 63 YPLTVLEPVRVQISQIDGTRKYLFRLSDGNL-----IESVLMKYHHGNSVCISSQVGCRM 117 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC + LVR L E+L Q+ + +G+ ++ N+V+MG Sbjct: 118 GCRFCASTIDGLVRGLLPSEMLEQIYRIQKDIGE-----------------RVDNVVVMG 160 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245 GEP NFDN+ + + + ++ GL+ S R +T+ST G VP I + + + + LAISLH+ Sbjct: 161 SGEPFDNFDNLLRFIELLNNEEGLNISARNLTVSTCGIVPKIYELADMQPQITLAISLHS 220 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +++LR ++P+ KY ++ ++ ACR+Y + RITFEY ++K +ND+ A+ L+ + Sbjct: 221 PNDELRRSIMPVANKYSIDEIMKACRYYVEKTGR-RITFEYSLVKDVNDTDECAMQLVHL 279 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +KGI +NLIP NP +Y + Q + F +++ G ++ +R G DI ACGQL Sbjct: 280 VKGIKCHVNLIPVNPIKERDYKQTAQAGVSHFRSRLEKCGVNATVRREMGRDIDGACGQL 339 Query: 366 K 366 + Sbjct: 340 R 340 >gi|307706322|ref|ZP_07643134.1| UPF0063 protein yfgB [Streptococcus mitis SK321] gi|307708956|ref|ZP_07645416.1| UPF0063 protein yfgB [Streptococcus mitis SK564] gi|307618240|gb|EFN97395.1| UPF0063 protein yfgB [Streptococcus mitis SK321] gi|307620292|gb|EFN99408.1| UPF0063 protein yfgB [Streptococcus mitis SK564] Length = 361 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 124/373 (33%), Positives = 210/373 (56%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+ ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + ++S+IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N++NV + +D G++ R IT+STSG I E + V LA+SLH Sbjct: 161 GIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L + Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKRDR 352 >gi|325688196|gb|EGD30215.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK72] Length = 362 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 126/373 (33%), Positives = 208/373 (55%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+++ E G + R +QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQDMIEWAEAQG----EKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + ++S+IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQNERVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+SLH Sbjct: 161 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +NDLR ++ INR +P+E L A +Y +N R+TFEY+ML +ND A L + Sbjct: 221 APNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKRDR 352 >gi|307703606|ref|ZP_07640548.1| UPF0063 protein yfgB [Streptococcus oralis ATCC 35037] gi|331266156|ref|YP_004325786.1| Radical SAM superfamily, predicted Fe-S-cluster redox enzyme [Streptococcus oralis Uo5] gi|307623013|gb|EFO02008.1| UPF0063 protein yfgB [Streptococcus oralis ATCC 35037] gi|326682828|emb|CBZ00445.1| Radical SAM superfamily, predicted Fe-S-cluster redox enzyme [Streptococcus oralis Uo5] Length = 361 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 124/373 (33%), Positives = 210/373 (56%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+ ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + ++S+IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N++NV + +D G++ R IT+STSG I E + V LA+SLH Sbjct: 161 GIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L + Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKKGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKRDR 352 >gi|163815234|ref|ZP_02206611.1| hypothetical protein COPEUT_01394 [Coprococcus eutactus ATCC 27759] gi|158449429|gb|EDP26424.1| hypothetical protein COPEUT_01394 [Coprococcus eutactus ATCC 27759] Length = 374 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 127/367 (34%), Positives = 202/367 (55%), Gaps = 30/367 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K L M +EL++ + +G P R QI++W +V+ + M+++ + +R L++ Sbjct: 28 KCDLKSMSIDELKDWVQGVGQPA----FRAKQIYQWFHVKLAGSIEEMTNLPKSLRELMD 83 Query: 66 QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I +V S DGT K+L R + IE+V + K ++C+SSQVGC Sbjct: 84 EQ-KIYGVNVVTRLESKEDGTNKFLFRLHDGNV-----IESVLMRYKHGNSVCISSQVGC 137 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC + LVRNLTA E+L Q+ + + G+ +ISN+V+ Sbjct: 138 RMGCRFCASTIGGLVRNLTASEMLSQIYEIQKISGE-----------------RISNVVV 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243 MG GEPL NFDN+ + + + +D GL+ S+R IT+S+ G VP I R+ + ++ + A+SL Sbjct: 181 MGTGEPLDNFDNLVRFIKMLTDENGLNISQRNITVSSCGLVPEIKRLADLDLTITFALSL 240 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA ++ R L+PI +Y +E ++DACR+Y + RITFEY ++KG NDSP A L Sbjct: 241 HAPNDADRRELMPIANRYSIEEVLDACRYYFDKTGR-RITFEYSLVKGQNDSPEKARELA 299 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++KG+ +NLIP NP + +D I F + ++ + +R G DI AACG Sbjct: 300 ALIKGMNCHVNLIPVNPIKERSFERADNTSIENFRKVLESRQITVTVRRSMGRDIDAACG 359 Query: 364 QLKSLSK 370 QL+ + Sbjct: 360 QLRRKYE 366 >gi|322388131|ref|ZP_08061736.1| cfr family radical SAM enzyme [Streptococcus infantis ATCC 700779] gi|321141038|gb|EFX36538.1| cfr family radical SAM enzyme [Streptococcus infantis ATCC 700779] Length = 361 Score = 420 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 124/373 (33%), Positives = 210/373 (56%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRHGMQEWILEQG----EKKFRADQIWEWLYRKRVQTFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 EQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + ++S+IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N++NV + +D G++ R IT+STSG I E + V LA+SLH Sbjct: 161 GIGEPFDNYNNVLNFIRTINDDKGMAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L + Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKKGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKRDR 352 >gi|259047489|ref|ZP_05737890.1| Cfr family radical SAM enzyme [Granulicatella adiacens ATCC 49175] gi|259035680|gb|EEW36935.1| Cfr family radical SAM enzyme [Granulicatella adiacens ATCC 49175] Length = 371 Score = 420 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 129/379 (34%), Positives = 206/379 (54%), Gaps = 26/379 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K + GM E L G + R Q+W W+Y + + F+ M+++ + + L Sbjct: 15 KPIIYGMPLENLTAWFEAKG----EKKFRAGQLWDWLYRKRVTSFEEMTNLPKALIEELQ 70 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + F+ ++ S DGTRK+L + IETV +P++ ++CV++QVGC+ Sbjct: 71 EEFTFPVLNERIKQQSTDGTRKFLFELADGLL-----IETVLMPQEYGLSICVTTQVGCN 125 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G R+L A EI+ QV+ + L + S G ++S+IV+M Sbjct: 126 IGCTFCASGIIAKQRDLVAGEIVAQVMHVQRTLDEV------------SPGDRVSHIVVM 173 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+DNV K L + + GL R IT+STSG P I +E + V LA+SLH Sbjct: 174 GIGEPFDNYDNVIKFLKVVNSDKGLGIGARHITVSTSGLAPKIREFADEGLQVNLALSLH 233 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ND R+ ++ INRKYP+E+++DA Y +N R+TFEY+ML +NDS A L Sbjct: 234 APDNDTRSRIMRINRKYPIEVVMDAINEYIAKTNR-RVTFEYIMLDHVNDSVEQAQQLAD 292 Query: 305 IL--KGIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +L K + +NLIP+N + Y S ++ +V F + +K++ + +R G DI AA Sbjct: 293 LLADKKRLSYVNLIPYNKVREHDQYERSGKERVVAFYDVLKKNHINCVVRKEFGHDIEAA 352 Query: 362 CGQLKSLSKRIPKVPRQEM 380 CGQL+S + + + ++ Sbjct: 353 CGQLRSSQMKRDRAEKTKV 371 >gi|253682293|ref|ZP_04863090.1| radical SAM enzyme, Cfr family [Clostridium botulinum D str. 1873] gi|253562005|gb|EES91457.1| radical SAM enzyme, Cfr family [Clostridium botulinum D str. 1873] Length = 343 Score = 420 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 133/362 (36%), Positives = 205/362 (56%), Gaps = 29/362 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++++ EEL+ + + G + R QI++WIY + F M++IS+ + L Sbjct: 2 KNILDFDLEELKSWMAENG----ESKFRAKQIFEWIYKKSAFSFHEMTNISKASKEKLKN 57 Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F I P I+ + S DGT K+L + I IE+V + K ++CVS+Q+GC Sbjct: 58 SFYIEIPNIIKKYKSNIDGTEKFLFEYKDGNI-----IESVVMRYKHGNSICVSTQIGCR 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC + + +VRNLT+ EI+ Q+L A+ +G+ +ISN+V+M Sbjct: 113 MGCKFCASTVEGVVRNLTSGEIVAQILKAQQEIGE-----------------RISNVVLM 155 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G GEPL N+DNV K + + +D L +R ITLST G VP I + +E + + LAISLH Sbjct: 156 GSGEPLDNYDNVVKFIKLINDDNALKIGQRHITLSTCGIVPKIKELADEKLQITLAISLH 215 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++++R ++P+ KY ++ L+DAC++Y ++N RITFEY ++ GINDS ++A L Sbjct: 216 APNDEIRKSMMPVANKYNIKELLDACKYYSRITNR-RITFEYALVNGINDSAKNAEELFN 274 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 LKGI +NLIP N +Y S K+I F + + G + IR G DI ACGQ Sbjct: 275 QLKGILCHVNLIPVNEIKENDYKRSRAKNIEEFKNILIKYGIETTIRREMGSDINGACGQ 334 Query: 365 LK 366 L+ Sbjct: 335 LR 336 >gi|86158056|ref|YP_464841.1| hypothetical protein Adeh_1631 [Anaeromyxobacter dehalogenans 2CP-C] gi|123750314|sp|Q2IIC5|RLMN_ANADE RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|85774567|gb|ABC81404.1| 23S rRNA m(2)A-2503 methyltransferase [Anaeromyxobacter dehalogenans 2CP-C] Length = 372 Score = 420 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 146/378 (38%), Positives = 214/378 (56%), Gaps = 19/378 (5%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + +E L + +G R Q+++W+++RG + M+D+ + +R L + Sbjct: 9 PDLRSLPQERLASLIAGLG----EKPFRARQVYRWLHLRGAASLEEMTDVPRALRERLAE 64 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + E E+ S DGT KW R + +E+VY+PE R TLCVS+QVGC++ Sbjct: 65 GTRLTTLERATEQRSADGTIKWTWRTRDGKL-----VESVYLPETDRKTLCVSTQVGCAV 119 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC TGT L RNL EI+ QV A L + E R ++N+V MG Sbjct: 120 GCTFCMTGTMGLARNLEPGEIVDQVHRANRRLIELGEGEGP---------RPLTNLVFMG 170 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N+ ++K +L + G +FS R +T+STSG VP + R+GEE V LA+SL+A Sbjct: 171 MGEPLANYRSLKVALDLLLSEDGPNFSHRHVTVSTSGLVPVMRRLGEETQVKLAVSLNAT 230 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ R+ ++PINR+YPL L+ ACR +P + RRITFEYVML G+ND+P DA L ++L Sbjct: 231 TDAQRDAIMPINRRYPLAELLRACREFP-MKQGRRITFEYVMLGGVNDAPEDAERLARLL 289 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +GIPAK+NLIP+N PG + + F + + ++ +R RG DI AACGQL Sbjct: 290 RGIPAKVNLIPYNENPGLGFAAPAPGAVERFRDLLVARNVTAVVRKNRGTDIAAACGQLA 349 Query: 367 SLSKRIPKVPRQEMQITG 384 + R +TG Sbjct: 350 AEGGPGDPRRRAAAALTG 367 >gi|303239357|ref|ZP_07325885.1| radical SAM enzyme, Cfr family [Acetivibrio cellulolyticus CD2] gi|302593143|gb|EFL62863.1| radical SAM enzyme, Cfr family [Acetivibrio cellulolyticus CD2] Length = 347 Score = 420 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 120/363 (33%), Positives = 205/363 (56%), Gaps = 30/363 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K L+ + EELE L++G + R Q+++W+ +G++D M+++S+++R L Sbjct: 4 KVDLLNLTIEELENFFLEMG----QQKFRAKQVFQWV-NKGVKDIDEMTNLSKDIRESLR 58 Query: 66 QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I E+V++ +S DGT K+L + I +E+V + + ++C+SSQVGC Sbjct: 59 ASAYINKLEVVEKFVSKIDGTTKYLFKLIDGNI-----VESVLMKYEHGFSVCISSQVGC 113 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC + +RNLT+ E+L QVL ++ G ++ N+V+ Sbjct: 114 KMGCKFCASTGVGFLRNLTSAEMLDQVLTIQN-----------------DAGSRVGNVVV 156 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISL 243 MG+GEP N+DN+ K + + + G++ R I +ST G VP I ++ E + + L+ISL Sbjct: 157 MGIGEPFDNYDNLVKFIRLINHKDGMNLGARHIAVSTCGLVPEILKLSKENLPITLSISL 216 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++ R ++P+N++Y ++ LI+AC+ Y + +RRITFEY ++ G+ND A L Sbjct: 217 HATNDEAREKIMPVNKRYSIDKLIEACKIYTE-TTSRRITFEYALIDGVNDLIEYAQQLS 275 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LKG+ +NLIP N + S ++ I F E +++ G + +R G DI AACG Sbjct: 276 NLLKGMLCHVNLIPVNSVTNTGFKKSSKERIYKFKEVLEKRGIETTVRRELGADIDAACG 335 Query: 364 QLK 366 QL+ Sbjct: 336 QLR 338 >gi|39996213|ref|NP_952164.1| ribosomal RNA large subunit methyltransferase N [Geobacter sulfurreducens PCA] gi|81702805|sp|Q74E53|RLMN_GEOSL RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|39982978|gb|AAR34437.1| conserved hypothetical protein TIGR00048 [Geobacter sulfurreducens PCA] gi|307634805|gb|ADI83948.2| 23S rRNA (2-methyl-A2503)-methyltransferase [Geobacter sulfurreducens KN400] Length = 360 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 159/368 (43%), Positives = 215/368 (58%), Gaps = 31/368 (8%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M+ + + G+ +ELE LL G R R QI+KW+Y RG F M+D+++E+ Sbjct: 1 MDTM--IDIKGLSIDELERFLLGKG----KERYRARQIFKWLYQRGATSFAEMTDLAKEL 54 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L + I +IS DGTRK+L R C +E+V IPE+ R TLC+SS Sbjct: 55 RRDLEETARISTLSPEALEISRDGTRKYLFRLDDGC-----SVESVLIPEEDRNTLCISS 109 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC++ C FC TGT +L RNLT EI+ QV + + Sbjct: 110 QVGCAMACEFCLTGTFRLTRNLTTAEIVNQVCAVQR-------------------DVPVR 150 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 NIV MGMGEPL N DNV ++L I GL FS RRIT+ST+G VP + R+G + V LA Sbjct: 151 NIVFMGMGEPLANLDNVIRALQIMLHDDGLQFSTRRITVSTAGLVPEMERLGRSVTVNLA 210 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SL+A +++LR+ ++PINRKYPL +L+DACR +P L R+IT EYV+L G+ND+ DA Sbjct: 211 VSLNATTDELRDRIMPINRKYPLAVLLDACRRFP-LPGRRKITIEYVLLGGVNDTLDDAK 269 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L+++L IP+KINLIPFN GC + Q I F + ++ R+ RG DI A Sbjct: 270 RLVRLLSDIPSKINLIPFNEHEGCSFRSPSQDAIDRFHRYLLDKHFTVITRSSRGADISA 329 Query: 361 ACGQLKSL 368 ACGQLK Sbjct: 330 ACGQLKGK 337 >gi|167464611|ref|ZP_02329700.1| Radical SAM family enzyme [Paenibacillus larvae subsp. larvae BRL-230010] gi|322384327|ref|ZP_08058025.1| Fe-S-cluster-like AdoMet radical enzyme [Paenibacillus larvae subsp. larvae B-3650] gi|321150829|gb|EFX44266.1| Fe-S-cluster-like AdoMet radical enzyme [Paenibacillus larvae subsp. larvae B-3650] Length = 343 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 125/362 (34%), Positives = 205/362 (56%), Gaps = 26/362 (7%) Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69 + ++ + L + G P R QI+ W+YV+ + D MS++S+ +R + +F Sbjct: 2 YDLTYDDWKTWLKENGEPA----FRADQIFDWLYVKRVTDVNQMSNLSKALREKIKTNFE 57 Query: 70 IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129 + + + + S DGT K+L + IETV + ++CV++QVGC + C+ Sbjct: 58 FVVLKEIANQRSQDGTVKFLFELSDKN-----AIETVIMKHNYGNSVCVTTQVGCRVGCT 112 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 FC + L R+L+A EI+ Q++ A+ LL + ++S+IV+MG+GE Sbjct: 113 FCASTLGGLKRDLSAGEIVAQIVKAQKLLDE--------------TDERVSSIVIMGIGE 158 Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248 P N++ + K L I D GL +R IT+STSG VPNI R +E + LAIS+HA ++ Sbjct: 159 PFENYEAMMKFLKIMIDPKGLHIGQRHITVSTSGIVPNIYRFADEKTQINLAISIHAPND 218 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 LR+ L+P+NR++P LI+AC++Y + RRITFEY ++ G+ND A L ++L+ Sbjct: 219 ALRSKLMPVNRRFPFADLIEACKYYTQ-TTGRRITFEYALMGGVNDQAEHAEELAQVLQQ 277 Query: 309 IP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 P +NLIP N +Y+ + ++DI F ++R+ ++ IR +G DI AACGQL++ Sbjct: 278 FPMCHVNLIPVNYVMERKYVRTPREDIFNFQRILERNKINATIRREQGSDIAAACGQLRA 337 Query: 368 LS 369 Sbjct: 338 KH 339 >gi|331269682|ref|YP_004396174.1| radical SAM enzyme, Cfr family [Clostridium botulinum BKT015925] gi|329126232|gb|AEB76177.1| radical SAM enzyme, Cfr family [Clostridium botulinum BKT015925] Length = 343 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 137/362 (37%), Positives = 205/362 (56%), Gaps = 29/362 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++++ EEL+ + + G + R QI++WIY + I +F M++IS+ + L Sbjct: 2 KNILDFNLEELKNWMAENG----ESKFRAKQIFEWIYKKAIFNFDEMTNISKASKEKLKN 57 Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F I P I+++ S DGT K+L + I IE+V + K ++CVS+Q+GC Sbjct: 58 SFYIEIPNIMEKYKSNIDGTEKFLFEYKDGNI-----IESVVMRYKHGNSICVSTQIGCR 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC + +VRNLT+ EI Q+L A+ +G+ +ISN+V+M Sbjct: 113 MGCKFCASTVDGVVRNLTSGEIAAQILKAQQEIGE-----------------RISNVVLM 155 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G GEPL N+DNV K + + +D L +R ITLST G VP I + +E + + LAISLH Sbjct: 156 GSGEPLDNYDNVLKFIKLINDDNALKIGQRHITLSTCGIVPKIKELADEKLQITLAISLH 215 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++D+R ++P+ KY + L+DAC++Y ++N RITFEY ++ GINDS ++A L Sbjct: 216 APNDDIRKSMMPVANKYNINELLDACKYYSKITNR-RITFEYALVNGINDSAKNAEELFN 274 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 LKGI INLIP N +Y S KDI F + + G + IR G DI ACGQ Sbjct: 275 QLKGILCHINLIPVNEIKENDYKRSGAKDIEEFKNILNKYGIETTIRREMGSDINGACGQ 334 Query: 365 LK 366 L+ Sbjct: 335 LR 336 >gi|197302405|ref|ZP_03167461.1| hypothetical protein RUMLAC_01133 [Ruminococcus lactaris ATCC 29176] gi|197298526|gb|EDY33070.1| hypothetical protein RUMLAC_01133 [Ruminococcus lactaris ATCC 29176] Length = 351 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 114/377 (30%), Positives = 203/377 (53%), Gaps = 29/377 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ + + L+E + +G R Q+++W++V+ DF M+++S+ +R L Sbjct: 2 KKDIRAYGYDRLKEEMEALG----EKPFRAKQVYEWLHVKLADDFDEMTNLSKALREKLK 57 Query: 66 QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + + I+ ++++ +IS DGT K+L + + +E+V + K ++C+SSQ GC Sbjct: 58 EEYVILPVKMLERQISQIDGTNKFLFQLYDGNV-----VESVLMRYKHGNSVCISSQAGC 112 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL++ E+L Q+ + + + ++SN+V+ Sbjct: 113 RMGCAFCASTIGGLQRNLSSSEMLGQIYQIQKITQE-----------------RVSNVVV 155 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISL 243 MG GEPL N++N + + +D GL+ S+R +T+ST G VP I + E + + LA+SL Sbjct: 156 MGTGEPLDNYENFLNFVHLLTDEHGLNISQRNVTVSTCGIVPKILELAKEHLQITLALSL 215 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H + + R L+P+ KY L ++DAC Y + R+TFEY ++ G+ND+ DA L Sbjct: 216 HGSTQEKRKRLMPVANKYHLPEVLDACDTYFRETGR-RVTFEYSLVHGVNDTEEDARELT 274 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LK +NLIP NP +++ +K+ + F +++SG + IR G DI ACG Sbjct: 275 ALLKPRNCHLNLIPVNPVRERDFVRPSRKNALNFKNKLEKSGINVTIRREMGSDIDGACG 334 Query: 364 QLKSLSKRIPKVPRQEM 380 QL+ + +E+ Sbjct: 335 QLRRSYVKADVAEGEEV 351 >gi|297544781|ref|YP_003677083.1| Cfr family radical SAM protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842556|gb|ADH61072.1| radical SAM enzyme, Cfr family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 342 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 137/368 (37%), Positives = 202/368 (54%), Gaps = 30/368 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L M EE+EE + IG R R QI+KWIY + I DF M+DIS+ +R L + Sbjct: 3 NLKNMTLEEMEEFFVNIG----ESRYRAKQIYKWIYGKKITDFDKMTDISKNLRSKLKEI 58 Query: 68 FSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I ++ ++S D T K+L + I IE V I + T CVS+QVGC++ Sbjct: 59 AYISQLKVEARRVSEIDNTVKYLFLLEDKNI-----IEGVAIKYRFGNTACVSTQVGCNM 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 CSFC + VR+L A E++ QV+ S G KISNIV+MG Sbjct: 114 RCSFCASAIGGKVRDLKASEMVDQVMSIDSDYG------------------KISNIVLMG 155 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 GEP N++ V K + I ++ GL R IT+ST G +P I + +E + V L+ISLHA Sbjct: 156 SGEPFDNYEEVMKFIKIVNNPYGLGIGSRHITISTCGIIPKIYQFADEKLQVNLSISLHA 215 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +++LR L+PIN+ YPLE L+ AC++Y + RRITFEY +++G+ND A L+ + Sbjct: 216 PNDELRTQLMPINKAYPLEELMKACKYYIEKT-RRRITFEYSLIEGVNDKKEHAYQLVDL 274 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G+ +NLIP N + + + ++ F + I+ +G S +R G DI AACGQL Sbjct: 275 LQGMLCHVNLIPINYVKEIGFKKAANEKVMMFKKIIENAGISCTVRRELGSDIEAACGQL 334 Query: 366 KSLSKRIP 373 + + Sbjct: 335 RRKYLKER 342 >gi|189426654|ref|YP_001953831.1| ribosomal RNA large subunit methyltransferase N [Geobacter lovleyi SZ] gi|189422913|gb|ACD97311.1| radical SAM enzyme, Cfr family [Geobacter lovleyi SZ] Length = 351 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 144/374 (38%), Positives = 213/374 (56%), Gaps = 32/374 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + L + LE+ L G R R +QI+KW+Y + F M+++S+ +R L Sbjct: 6 RTDLKNLTLPALEQFLQGQG----KERYRATQIFKWLYQHDVSSFDEMTNVSKALRAELV 61 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I E ++ DGTRK+L +E+V IP++ R TLC+SSQ GC+ Sbjct: 62 RTACISRLEPETVEVGSDGTRKYLFMLED-----GNAVESVIIPDEDRNTLCISSQAGCA 116 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC TGT L RNLT EI+ Q+L + ++ NIVMM Sbjct: 117 MQCAFCLTGTFSLTRNLTTAEIVNQILAVQR-------------------DVEVRNIVMM 157 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N DNV +L I ++ GL S RR+T+ST G VP + R+G E+ V LA+SL+A Sbjct: 158 GMGEPLHNLDNVIPALQIMAEDNGLQLSSRRVTVSTCGLVPELERLGREVTVNLAVSLNA 217 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +++LR+ ++P+N+ YP+ L+ A ++YP L R+IT EYV+L G+ND+P DA L+++ Sbjct: 218 TTDELRDRIMPVNKAYPIATLLAALKNYP-LPGRRKITIEYVLLGGLNDTPEDAKRLVRL 276 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L IP KINLIPFNP G ++ + + F + + ++ R RG DI AACGQL Sbjct: 277 LSDIPCKINLIPFNPHEGADFRPPSRAALDAFHKYLLDRHFTVITRDSRGSDISAACGQL 336 Query: 366 KSLSKRIPKVPRQE 379 K ++ + P QE Sbjct: 337 KG---KLDRKPSQE 347 >gi|332522196|ref|ZP_08398448.1| 23S rRNA m2A2503 methyltransferase [Streptococcus porcinus str. Jelinkova 176] gi|332313460|gb|EGJ26445.1| 23S rRNA m2A2503 methyltransferase [Streptococcus porcinus str. Jelinkova 176] Length = 360 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 127/373 (34%), Positives = 204/373 (54%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+EL + + G R R +QIW W+Y + ++ F+ M++IS++ LLN Sbjct: 2 KPSIYSLTRDELIDWAIANG----QKRFRATQIWDWLYKKRVQSFEEMTNISKDFISLLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 EQFCLNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L + EI Q++L + + ++S++V+M Sbjct: 113 IGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDE------------RGQDERVSHVVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+ NV L +D GL+ R IT+STSG I E + V LA+SLH Sbjct: 161 GIGEPFDNYKNVMTFLRTINDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ INR +PLE L A +Y +N R+TFEY+ML +ND A L Sbjct: 221 APNNELRSSIMRINRSFPLEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAA 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 + K I + +NLIP+NP + Y S + + F + +K++G + +R G DI AA Sbjct: 280 LTKNIRKLSYVNLIPYNPVSEHDQYSRSPKARVEAFYDVLKKNGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKKDR 352 >gi|297568774|ref|YP_003690118.1| radical SAM enzyme, Cfr family [Desulfurivibrio alkaliphilus AHT2] gi|296924689|gb|ADH85499.1| radical SAM enzyme, Cfr family [Desulfurivibrio alkaliphilus AHT2] Length = 354 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 154/366 (42%), Positives = 210/366 (57%), Gaps = 19/366 (5%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M+ +K L M EL + + + R QI+ WI+ DF M+DI++ V Sbjct: 1 MDT-EKVDLKNMTLPELTAWVESLDLKP----FRARQIFAWIHRPDFTDFSQMTDIAKHV 55 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R LL + + E + S DGT K+ R IE+V IPE R TLCVSS Sbjct: 56 RSLLAEKAFLSRLEPDKVESSQDGTVKFAFRL-----ADGQLIESVLIPEDDRYTLCVSS 110 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC++ C FC T T RNL A EI+ QV A L PG + +I+ Sbjct: 111 QVGCAMGCRFCLTATMGFKRNLEAAEIVGQVDAALRWLLARPGATGEKT--------RIN 162 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+V MGMGEPL NFD++ +++ I + G FS RRIT+ST G VP + +GE++ V LA Sbjct: 163 NLVFMGMGEPLLNFDHLLRAIKILMEQRGHDFSGRRITVSTCGIVPKMKELGEQVPVNLA 222 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ND+R+ L+PIN+KYPLE L+ ACR YP L RRI EYVM+K +NDS A Sbjct: 223 VSLHAADNDIRDQLMPINKKYPLEQLLRACREYP-LPPRRRIMIEYVMIKDLNDSVAQAR 281 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L+K L GI KIN++P+N P Y D++ + F + ++R+G+++ +R RG DI A Sbjct: 282 LLVKKLHGIRCKINILPYNENPDSPYQAPDEETVENFRQILRRAGHTTLLRQSRGADISA 341 Query: 361 ACGQLK 366 ACGQL Sbjct: 342 ACGQLA 347 >gi|323352763|ref|ZP_08087733.1| cfr family radical SAM enzyme [Streptococcus sanguinis VMC66] gi|322121799|gb|EFX93545.1| cfr family radical SAM enzyme [Streptococcus sanguinis VMC66] Length = 362 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 128/373 (34%), Positives = 208/373 (55%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+E+ E G + R SQIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQEMIEWAEAQG----EKKFRASQIWEWLYRKRVQSFEEMTNLSKDLIARLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + ++S+IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+SLH Sbjct: 161 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +NDLR ++ INR +P+E L A +Y +N R+TFEY+ML +ND A L + Sbjct: 221 APNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKTGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKRDR 352 >gi|306829710|ref|ZP_07462899.1| cfr family radical SAM enzyme [Streptococcus mitis ATCC 6249] gi|304428061|gb|EFM31152.1| cfr family radical SAM enzyme [Streptococcus mitis ATCC 6249] Length = 361 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 125/373 (33%), Positives = 210/373 (56%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+ ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+ + LN Sbjct: 2 KPSIYSLTRQAMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKGLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 EQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + ++S+IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N++NV + +D G++ R IT+STSG I E + V LA+SLH Sbjct: 161 GIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +NDLR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L + Sbjct: 221 APNNDLRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDSLKKKGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKRDR 352 >gi|291560509|emb|CBL39309.1| 23S rRNA m(2)A-2503 methyltransferase [butyrate-producing bacterium SSC/2] Length = 343 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 124/368 (33%), Positives = 195/368 (52%), Gaps = 29/368 (7%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 L M +E++E + IG + R QI++W + M+++ ++++ + Q Sbjct: 2 DLKSMTLQEMQEYMESIG----EKKFRAKQIYEWFHKHLALSLDEMNNVPKKLKEKIEQT 57 Query: 68 FSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I + VD IS DGTRK+L I IE+V + K ++C+SSQ GC + Sbjct: 58 QEIYGVKPVDCFISKIDGTRKYLFELYDGNI-----IESVLMKYKHGNSVCISSQAGCRM 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC + L RNLT E+L Q+ + ++SN+VMMG Sbjct: 113 GCKFCASTLGGLDRNLTPSEMLSQIYYIQR-----------------DTEERVSNVVMMG 155 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245 GEP+ N+DNV + L + + GL+ S+R IT+ST G VP I + + + + LAISLH+ Sbjct: 156 TGEPMDNYDNVLRFLELITSEDGLNISQRNITISTCGIVPKIKELAQKHLQITLAISLHS 215 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++R L+PI KY ++ L+DAC +Y +N R+TFEY ++ G+ND P A L Sbjct: 216 PNDEMRRGLMPIAMKYSIDELLDACHYYFKETNR-RMTFEYSLVAGVNDQPVHAEELAGR 274 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG P +NLIP NP ++ S K ++ F + ++++ + IR G DI AACGQL Sbjct: 275 LKGFPCHVNLIPVNPIKERDFKQSMPKSVMEFKKILEKNRVNVTIRREMGADINAACGQL 334 Query: 366 KSLSKRIP 373 + + Sbjct: 335 RRKKLQSR 342 >gi|237747707|ref|ZP_04578187.1| ribosomal RNA large subunit methyltransferase N [Oxalobacter formigenes OXCC13] gi|229379069|gb|EEO29160.1| ribosomal RNA large subunit methyltransferase N [Oxalobacter formigenes OXCC13] Length = 387 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 149/380 (39%), Positives = 216/380 (56%), Gaps = 19/380 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + +L+G +L E K+ R Q+ +WI+ G+ DF M+D+++ +R L Sbjct: 5 RTNLLGFSPVQLVEYCQKL----NEKPFRAKQLQRWIHQFGVSDFAEMTDLAKSLRGKLE 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + P+I+ + +S DGTRKWLL +G IETV+IPE +RGTLCVS+Q GC+ Sbjct: 61 LCAEVKAPDILKDTVSSDGTRKWLL-----DVGAGNAIETVFIPEDTRGTLCVSTQAGCA 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q RNLT EI+ Q+ +A + G D + R+ISN+VMM Sbjct: 116 VNCLFCSTGKQGFSRNLTTAEIIGQLWMAEFAVRRSKGLTDAKDE------RQISNVVMM 169 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFD +L + D S+RR+T+STSG VP I R+ +E V LA+SLHA Sbjct: 170 GMGEPLFNFDASVSALKLMLDDNAYGLSRRRVTVSTSGVVPMIDRLAKECPVALAVSLHA 229 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ LR+ LVP+N+K+PL+ L+ AC+ Y + ITFEY ML GIND+ A L+K+ Sbjct: 230 PNDTLRDHLVPLNKKHPLKELMAACQRYLDYAPRDFITFEYCMLDGINDTDEHARELVKL 289 Query: 306 LKGIP----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +K P K+NLIPFN S + +F++ + +G + +R RG DI AA Sbjct: 290 VKHGPNPVSCKLNLIPFNSIAMPGLKRSTDARVQSFAKILLDAGIVTTVRKARGEDIEAA 349 Query: 362 CGQLKSLSKRIPKVPRQEMQ 381 CG L K ++ + + Sbjct: 350 CGLLAGEIKDRTRIQERMAE 369 >gi|115377093|ref|ZP_01464309.1| radical SAM enzyme, Cfr family [Stigmatella aurantiaca DW4/3-1] gi|310821316|ref|YP_003953674.1| ribosomal RNA large subunit methyltransferase n 2 [Stigmatella aurantiaca DW4/3-1] gi|115365932|gb|EAU64951.1| radical SAM enzyme, Cfr family [Stigmatella aurantiaca DW4/3-1] gi|309394388|gb|ADO71847.1| Ribosomal RNA large subunit methyltransferase N 2 [Stigmatella aurantiaca DW4/3-1] Length = 381 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 151/372 (40%), Positives = 214/372 (57%), Gaps = 18/372 (4%) Query: 11 GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70 + E L L + R Q+++W++ RG+ F M+D+S+ +R L + I Sbjct: 27 SLTLEGLARFLTEQ---LGERAFRAGQVYRWLHQRGVTSFDEMTDLSKALRQKLKEQAEI 83 Query: 71 IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130 + E++S DGT K+ + IE+VY+P + R TLCVS+QVGC++ CSF Sbjct: 84 VPLVKDLEQVSIDGTIKYRFKTRDGRF-----IESVYMPSEDRKTLCVSTQVGCAMKCSF 138 Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 C TGT L RNLT EI+ QV + G E R +SN+V MGMGEP Sbjct: 139 CMTGTLGLKRNLTPGEIVAQVHTVNREVRAREGLETY---------RPLSNLVFMGMGEP 189 Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDL 250 L NF+N+K +LSI G +FS R IT+ST G VP I R G+E V LAISL+A +++ Sbjct: 190 LHNFENLKTALSILQSQDGPNFSHRHITVSTVGLVPMIERFGQETDVKLAISLNASTDEQ 249 Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310 RN +P+NRK+ +E L++ACR +P L RRITFEYV+L+G NDS DA LI++L+GIP Sbjct: 250 RNQTMPVNRKWNIEALLEACRKFP-LRQGRRITFEYVLLRGFNDSDEDAYRLIELLRGIP 308 Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 AK+NLIP+N PG + + ++ F + ++ IR RG DI ACGQL + S Sbjct: 309 AKVNLIPYNENPGLGFHTTGEERAEQFRAILAEGHIAAFIRQNRGRDIAGACGQLANRSG 368 Query: 371 RIPKVPRQEMQI 382 + Q ++ Sbjct: 369 QDAAQSTQAPEL 380 >gi|296876970|ref|ZP_06901014.1| cfr family radical SAM enzyme [Streptococcus parasanguinis ATCC 15912] gi|296432005|gb|EFH17808.1| cfr family radical SAM enzyme [Streptococcus parasanguinis ATCC 15912] Length = 362 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 125/373 (33%), Positives = 210/373 (56%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+++ + + G + R +QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQDMIDWAEENG----EKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + ++S+IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVSQIMLVQKYFDE------------RGQDERVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N++NV K + +D GL+ R IT+STSG I E + V LA+SLH Sbjct: 161 GIGEPFDNYNNVLKFIRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +NDLR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L + Sbjct: 221 APNNDLRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKQGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKRDR 352 >gi|322389001|ref|ZP_08062571.1| cfr family radical SAM enzyme [Streptococcus parasanguinis ATCC 903] gi|321144306|gb|EFX39714.1| cfr family radical SAM enzyme [Streptococcus parasanguinis ATCC 903] Length = 362 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 125/373 (33%), Positives = 210/373 (56%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+++ + + G + R +QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQDMIDWAEENG----EKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + ++S+IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVSQIMLVQKYFDE------------RGQDERVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N++NV K + +D GL+ R IT+STSG I E + V LA+SLH Sbjct: 161 GIGEPFDNYNNVLKFIRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +NDLR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L + Sbjct: 221 APNNDLRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKQGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKRDR 352 >gi|187932932|ref|YP_001885417.1| radical SAM enzyme, Cfr family [Clostridium botulinum B str. Eklund 17B] gi|205829737|sp|B2THS9|RLMN_CLOBB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|187721085|gb|ACD22306.1| radical SAM enzyme, Cfr family [Clostridium botulinum B str. Eklund 17B] Length = 347 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 129/372 (34%), Positives = 202/372 (54%), Gaps = 30/372 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++++ EEL + + R QI WIY + +R+F M ++ + + L + Sbjct: 2 KNILDYTLEELTLWMKEN----NESSFRAKQIMSWIY-KDVRNFSDMRNMPKSLIAKLEE 56 Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +F I PEI + S DGT K+L +F + IE+V + K ++C+S+QVGC Sbjct: 57 NFEIALPEIEEIYKSELDGTEKFLFKFSDGNL-----IESVLMRYKHGNSICISTQVGCR 111 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC + +RNLT EIL Q+L+ ++ +G+ +ISN+V+M Sbjct: 112 MGCKFCASTIDGRIRNLTTGEILAQILVVQNHIGE-----------------RISNVVLM 154 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244 G GEPL N++NV K L I S GL+ +R ITLST G VP I + + E+ + LAISLH Sbjct: 155 GSGEPLDNYENVMKFLDIVSAEYGLNIGQRHITLSTCGIVPKIYELADKELSITLAISLH 214 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A S++ R ++PI KY ++ +++AC+++ + RITFEY ++K +NDS DA L K Sbjct: 215 AFSDEKRKEIMPIANKYSIDEILNACKYFVNKTKR-RITFEYSLVKDVNDSKEDARALGK 273 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKG+ +NLIP N + S ++ I F+ + G +R G DI AACGQ Sbjct: 274 LLKGMLCHVNLIPVNEIKERTFKRSSKETIQDFANILSNLGIEVTVRREMGSDINAACGQ 333 Query: 365 LKSLSKRIPKVP 376 L+ + + Sbjct: 334 LRRSYIKTQETR 345 >gi|322419007|ref|YP_004198230.1| radical SAM enzyme, Cfr family [Geobacter sp. M18] gi|320125394|gb|ADW12954.1| radical SAM enzyme, Cfr family [Geobacter sp. M18] Length = 344 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 138/370 (37%), Positives = 207/370 (55%), Gaps = 29/370 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K + + + LE + +G R R QI+KW+Y DF M+++S+E R + Sbjct: 1 MEKTDIKNLTLQGLEAFIAGLG----KERFRAKQIFKWLYQMDATDFDEMTNVSKEFRAV 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L + I + S DGTRK+L R +E+V IP++ R TLC+SSQVG Sbjct: 57 LKERAEIGDLSPEAVEASEDGTRKYLFRLKD-----GAAVESVLIPDEGRNTLCISSQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC TG+ L RNLT EI+ QV + ++NIV Sbjct: 112 CAMKCAFCLTGSFGLSRNLTTAEIVNQVCAVKREH-------------------PVNNIV 152 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MGMGEPL N V ++ I +D G S R++T+STSG VP +A +G V LA+SL Sbjct: 153 FMGMGEPLHNLAAVIPAVQILTDPDGFQLSTRKVTVSTSGLVPEMAELGRGCTVNLAVSL 212 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 +A ++++R+ ++PINR+YPL+ L+ AC+ +P S IT EYV+++ +NDS DA L+ Sbjct: 213 NATTDEVRDRIMPINRRYPLKELLAACKAFPLPSRRW-ITMEYVLIRDLNDSLDDAKRLV 271 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +++ IP+K+NLIPFN GC + Q+ I F + + + R+ RG DI AACG Sbjct: 272 RLISNIPSKVNLIPFNEHDGCSFKSPTQETIDRFHKYLLDKHVTVITRSSRGGDISAACG 331 Query: 364 QLKSLSKRIP 373 QLK R+ Sbjct: 332 QLKGKLDRMQ 341 >gi|94264318|ref|ZP_01288111.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93455284|gb|EAT05494.1| conserved hypothetical protein [delta proteobacterium MLMS-1] Length = 345 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 154/367 (41%), Positives = 208/367 (56%), Gaps = 22/367 (5%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN K L + EL + + + R QI+ W+Y DF M+DI++ V Sbjct: 1 MNN-PKTDLKNLTLPELTAWVETLNLKP----FRARQIFSWLYRPDFSDFAQMTDIAKHV 55 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R LL + + E E+ S DGT K+ R + IE+V IPE+ R TLCVSS Sbjct: 56 RALLAEKATFSRLEAAKEEHSTDGTVKFAFRLSDGHL-----IESVLIPEEDRHTLCVSS 110 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC++ C+FC TGT +RNLT E++ QV A L +++ Sbjct: 111 QVGCAMGCNFCLTGTMGFIRNLTVAEMVGQVDQAAHWLWQRGAGSG-----------RLN 159 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+V MGMGEPL NFDN+ K+++I + G S RRIT+ST G VP + +GE++ V LA Sbjct: 160 NLVFMGMGEPLLNFDNLIKAINILMEQRGHDLSGRRITVSTCGIVPRMKELGEKVPVNLA 219 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA + R L+P+NR YPL L+ ACR YP L RRI EY +L GINDSP A Sbjct: 220 VSLHAADHATREQLMPVNRTYPLAELLQACRQYP-LPPRRRIMIEYALLAGINDSPAAAR 278 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L+K L GI KIN++PFN P Y C D I F + ++R+G+++ +RT RG DI A Sbjct: 279 LLVKQLHGIRCKINILPFNETPAFPYRCPDPATIEAFRQILRRAGHTTLLRTSRGADIAA 338 Query: 361 ACGQLKS 367 ACGQL + Sbjct: 339 ACGQLAA 345 >gi|225574500|ref|ZP_03783110.1| hypothetical protein RUMHYD_02577 [Blautia hydrogenotrophica DSM 10507] gi|225038287|gb|EEG48533.1| hypothetical protein RUMHYD_02577 [Blautia hydrogenotrophica DSM 10507] Length = 347 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 118/364 (32%), Positives = 197/364 (54%), Gaps = 29/364 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + M EEL +AL +G R Q+++WI+ + + M+++S+ +R L + Sbjct: 2 TDIKSMTLEELRQALTGLG----EKPFRAKQLYEWIHRKLAVSYDEMTNLSKHLREKLEK 57 Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + E VD ++S DGT K+L R + IE+V + ++C+SSQVGC Sbjct: 58 EYPLTVLEAVDVQVSKQDGTCKYLFRLEDGNV-----IESVLMRYHHGNSVCISSQVGCR 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC + L RNL + E+L Q+ + L + ++SN+V+M Sbjct: 113 MGCKFCASTIGGLTRNLRSSEMLDQIYRIQRLSQE-----------------RVSNVVVM 155 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G GEPL N++N+ + + + + GL S+R +T+ST G VP I ++ +E + + LA+SLH Sbjct: 156 GTGEPLDNYENLLRFIELLTGEDGLHISQRNLTVSTCGLVPKIRQLADEKLQITLALSLH 215 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +++ R L+PI KY ++ ++DACR+Y + RITFEY +++G+ND DA L Sbjct: 216 APNDEKRKELMPIAYKYTMDEVLDACRYYFQKTGR-RITFEYSLVRGVNDFEEDACQLAG 274 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 ++ I +NLIP NP + S ++ + F +++ G + IR G DI ACGQ Sbjct: 275 QIQDINCHVNLIPVNPVKERSFRQSTRQAVENFKIKLEKCGINVTIRREMGSDIDGACGQ 334 Query: 365 LKSL 368 L+ Sbjct: 335 LRKR 338 >gi|153809821|ref|ZP_01962489.1| hypothetical protein RUMOBE_00202 [Ruminococcus obeum ATCC 29174] gi|149833999|gb|EDM89079.1| hypothetical protein RUMOBE_00202 [Ruminococcus obeum ATCC 29174] Length = 346 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 122/373 (32%), Positives = 200/373 (53%), Gaps = 30/373 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + M +EL+E + +IG R QI+ W++ + + M+++ + ++ L Sbjct: 2 TDIKSMTIDELKELMTQIG----EKPFRAKQIYSWLHEHLVTSYDEMANLPKNLKQKLAD 57 Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I E +D +IS DGTRK+L R + IE+V + K ++C+SSQ GC Sbjct: 58 -YPITALETLDVQISKVDGTRKYLFRLSDGNM-----IESVLMRYKYGNSVCISSQAGCR 111 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC + L RNL E+L Q+ ++ +G+ +ISN+V+M Sbjct: 112 MGCRFCASTIGGLTRNLLPSEMLDQIYRIQTSIGE-----------------RISNVVVM 154 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G GEPL N+DN+ + + I ++ G+ S+R +T+ST G VP I + EE + + LA+SLH Sbjct: 155 GTGEPLDNYDNLLRFIHILTEDGGIHISQRNLTVSTCGLVPKIYELAEEKLQMTLAVSLH 214 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +++ R L+PI KY ++ L+ ACR+Y + RITFEY ++ G+NDS +A L Sbjct: 215 APNDEKRRELMPIANKYSIDELLAACRNYFDKTGR-RITFEYSLVAGVNDSKENAQELAG 273 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 LKG+ +NLIP NP ++ S ++ + F +++ G + IR G DI ACGQ Sbjct: 274 RLKGLNCHVNLIPVNPVRERSFVRSTREAVENFKINLEKCGINGTIRREMGSDIDGACGQ 333 Query: 365 LKSLSKRIPKVPR 377 L+ + + Sbjct: 334 LRKRYMEKTESEK 346 >gi|160880620|ref|YP_001559588.1| radical SAM protein [Clostridium phytofermentans ISDg] gi|205829644|sp|A9KM95|RLMN_CLOPH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|160429286|gb|ABX42849.1| radical SAM enzyme, Cfr family [Clostridium phytofermentans ISDg] Length = 356 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 122/364 (33%), Positives = 200/364 (54%), Gaps = 29/364 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K + + EEL+ +L IG R QI++W++V+ +RDF+ M+++S+E+R L Sbjct: 6 EKIDIKALTLEELKASLKIIG----EKEFRAKQIYEWLHVKLVRDFEEMTNLSKELRAKL 61 Query: 65 NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + +I ++ S DGT K+L R + +E V + ++C+SSQVG Sbjct: 62 ASEYELICVNDLERYESKMDGTVKYLFRLSDGNV-----VECVLMKYHHGNSVCISSQVG 116 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC + L RNL E+L +V + L G+ ++SNIV Sbjct: 117 CRMGCRFCASTLGGLTRNLKTSEMLDEVYQIQRLSGE-----------------RVSNIV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG GEP+ N+DN K + + S S GL+ S+R IT+ST G VP + + EE + LA+S Sbjct: 160 IMGTGEPMDNYDNFVKFIRMISSSDGLNISQRNITVSTCGIVPKMRALAEEGFAITLALS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +++ R ++P+ Y L+ +++AC +Y + R+++EY ++ G+ND+ A L Sbjct: 220 LHAPNDEERAKIMPVANSYQLQDVLNACDYYYEKTGR-RVSYEYSLVDGVNDTAACAKEL 278 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LKG +NLIP NP +Y S +I F ++++ + IR G DI AAC Sbjct: 279 SRLLKGKNCHVNLIPVNPIKERDYKRSTGNNIQNFKNILEKNRINVTIRREMGSDINAAC 338 Query: 363 GQLK 366 GQL+ Sbjct: 339 GQLR 342 >gi|332366108|gb|EGJ43864.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1059] Length = 357 Score = 418 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 127/373 (34%), Positives = 208/373 (55%), Gaps = 31/373 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+E+ E G + R +QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQEMIEWAEAQG----EKKFRAAQIWEWLYRKRVQSFEEMTNLSKDLITKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + ++S+IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE-----------------RVSHIVVM 155 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+SLH Sbjct: 156 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 215 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +NDLR ++ INR +P+E L A +Y +N R+TFEY+ML +ND A L + Sbjct: 216 APNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQAKELAE 274 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA Sbjct: 275 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGVNCVVRQEHGTDIDAA 334 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 335 CGQLRSNTMKRDR 347 >gi|160939809|ref|ZP_02087156.1| hypothetical protein CLOBOL_04700 [Clostridium bolteae ATCC BAA-613] gi|158437243|gb|EDP15008.1| hypothetical protein CLOBOL_04700 [Clostridium bolteae ATCC BAA-613] Length = 362 Score = 418 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 128/374 (34%), Positives = 209/374 (55%), Gaps = 29/374 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ + M EE+ + +G R Q++ W++V+ F MS +S +R L Sbjct: 10 KKDIKSMTLEEVTAQMAALG----EKSFRAKQLYDWMHVKLAEGFDDMSSLSIPLRQKLK 65 Query: 66 QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +++S+ ++VDE++S DGTRK+L + IE+V++ ++C+SSQVGC Sbjct: 66 ENYSLTCLKMVDERVSQVDGTRKYLFGLEDGHV-----IESVWMQYHHGNSVCISSQVGC 120 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC + L RNL E+L Q+ +S+ G+ ++SN+V+ Sbjct: 121 RMGCRFCASTLDGLERNLRPSEMLEQIYRIQSITGE-----------------RVSNVVV 163 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG GEP+ N+DNV + L + S GL+ S+R +T+ST G VP I + EE + V LA+SL Sbjct: 164 MGSGEPMDNYDNVIRFLRLVSHEKGLNISQRSLTISTCGIVPGIRKFAEEGLAVTLALSL 223 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA ++++R L+P+ Y L+ +++AC +Y + R+TFEY +++G+ND+ +A L Sbjct: 224 HAPNDEVRKTLMPVANSYKLQDVLEACHYYYEKTGR-RLTFEYSLVRGVNDNLDEARALA 282 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K++K +NLIP NP +Y+ S QK I F ++++G + IR G DI ACG Sbjct: 283 KLIKDQHGHVNLIPVNPIKERDYVQSGQKAIQDFKNLLEKNGINVTIRREMGRDIGGACG 342 Query: 364 QLKSLSKRIPKVPR 377 QL+ K VP+ Sbjct: 343 QLRRSYKEASAVPQ 356 >gi|319939639|ref|ZP_08013998.1| ribosomal RNA large subunit methyltransferase N [Streptococcus anginosus 1_2_62CV] gi|319811228|gb|EFW07534.1| ribosomal RNA large subunit methyltransferase N [Streptococcus anginosus 1_2_62CV] Length = 367 Score = 418 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 128/373 (34%), Positives = 208/373 (55%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R++L + G + R +QIW+W+Y + ++ F M++IS+++ L Sbjct: 9 KPSIYSLTRQDLIDWTESKG----EKKFRATQIWEWLYRKRVQSFAEMTNISKDLLAKLE 64 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 65 DEFVVNPLRQRVVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 119 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + G ++S+IV+M Sbjct: 120 IGCTFCASGLIKKQRDLNNGEIMSQIMLVQKYFDE------------RGQGERVSHIVVM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+DNV K + +D GL+ R IT+STSG I E + V LA+SLH Sbjct: 168 GIGEPFDNYDNVLKFVRTVNDDKGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 227 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L + Sbjct: 228 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 286 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA Sbjct: 287 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKNGINCVVRQEHGTDIDAA 346 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + K Sbjct: 347 CGQLRSNTMKQDK 359 >gi|307704572|ref|ZP_07641477.1| UPF0063 protein yfgB [Streptococcus mitis SK597] gi|307621869|gb|EFO00901.1| UPF0063 protein yfgB [Streptococcus mitis SK597] Length = 361 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 124/373 (33%), Positives = 210/373 (56%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+ ++E +L+ G + QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIYSLTRQTMQEWVLEQG----EKKFHADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + ++S+IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N++NV + +D G++ R IT+STSG I E + V LA+SLH Sbjct: 161 GIGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L + Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++TF + +K+ G + +R G DI AA Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLTFYDTLKKKGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKRDR 352 >gi|295109190|emb|CBL23143.1| 23S rRNA m(2)A-2503 methyltransferase [Ruminococcus obeum A2-162] Length = 346 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 123/373 (32%), Positives = 201/373 (53%), Gaps = 30/373 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + M EEL+E +++IG R QI+ W++ + + M++I + ++ L Sbjct: 2 TDIKSMNMEELKELMVQIG----EKPFRAKQIYGWLHEHLVTSYDEMANIPKSLKEKLKD 57 Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I E +D + S DGTRK+L R + IE+V + K ++C+SSQ GC Sbjct: 58 -YPITVLEELDVQTSKVDGTRKYLFRLSDGNM-----IESVLMRYKYGNSVCISSQAGCR 111 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC + L RNL E+L Q+ ++ +G+ +ISN+V+M Sbjct: 112 MGCRFCASTIGGLTRNLLPSEMLDQIYRIQTSIGE-----------------RISNVVVM 154 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G GEPL N+DN+ + + I ++ G+ S+R +T+ST G VP I + +E + + LA+SLH Sbjct: 155 GTGEPLDNYDNLLRFIHILTEDGGIHISQRNLTVSTCGLVPRIYELADEKLQMTLAVSLH 214 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +++ R L+PI KY ++ L+DACR+Y + RITFEY ++ G+NDS +A L Sbjct: 215 APNDEKRRELMPIANKYSVDELLDACRYYFDKTGR-RITFEYSLVAGVNDSKENAQELAG 273 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 LKG+ +NLIP NP ++ S ++ + F +++ G + IR G DI ACGQ Sbjct: 274 RLKGLNCHVNLIPVNPVRERSFVRSTRQAVENFKINLEKCGINGTIRREMGSDIDGACGQ 333 Query: 365 LKSLSKRIPKVPR 377 L+ + + Sbjct: 334 LRKRYMEKTESEK 346 >gi|152989809|ref|YP_001355531.1| hypothetical protein NIS_0057 [Nitratiruptor sp. SB155-2] gi|205829830|sp|A6Q115|RLMN_NITSB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|151421670|dbj|BAF69174.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2] Length = 355 Score = 418 bits (1074), Expect = e-115, Method: Composition-based stats. Identities = 149/377 (39%), Positives = 220/377 (58%), Gaps = 42/377 (11%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++++ + +EEL++ + + R +QI++WIY +G +DF+ MS++ + +R L + Sbjct: 2 KNILDLTKEELQQEVT--------PKFRANQIYQWIYQKGAKDFESMSNLPKSMREELKE 53 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------------R 113 F+I P+I++ ++S DG++K+LL +E+V +P K R Sbjct: 54 KFTITPPKILNVEVSKDGSKKYLLGLQD-----GHTVESVLLPMKKEERDEKGNILKEAR 108 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 T+CVSSQVGC + C FC T VRNLT EI+ QVL R Sbjct: 109 YTVCVSSQVGCKVGCEFCLTAKGGFVRNLTPGEIVEQVLTIREDNNI------------- 155 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233 + NIV MGMGEPL N +NV K++ I SD G+S S RR T+STSG P I ++GE Sbjct: 156 -PANRRVNIVYMGMGEPLDNLENVAKAVKIFSDEHGMSISPRRQTISTSGLAPKIKKLGE 214 Query: 234 E-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 +GV+LAISLHAV ++LR L+PIN+ Y +E +I A + +P + +R+ FEY+M+K + Sbjct: 215 MNLGVLLAISLHAVDDELRQKLMPINKAYNIESVIQAVKEFP-IDQRKRVMFEYLMIKNL 273 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 ND + A L+K+L GI AK+NLI FNP+PG + + KD+ F + + G IR Sbjct: 274 NDDLKAAKKLVKLLHGIKAKVNLIYFNPYPGSPFQRPEPKDVEAFQKYLLDHGVLCTIRE 333 Query: 353 PRGLDILAACGQLKSLS 369 +GLDI AACGQLK S Sbjct: 334 SKGLDISAACGQLKEKS 350 >gi|218782479|ref|YP_002433797.1| radical SAM enzyme, Cfr family [Desulfatibacillum alkenivorans AK-01] gi|218763863|gb|ACL06329.1| radical SAM enzyme, Cfr family [Desulfatibacillum alkenivorans AK-01] Length = 359 Score = 418 bits (1074), Expect = e-115, Method: Composition-based stats. Identities = 147/370 (39%), Positives = 217/370 (58%), Gaps = 26/370 (7%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 N + +I EEL L + R QI +W+Y R F M+++++ R Sbjct: 3 NSSDQTDIISCTHEELVRWLADH----KLKPYRAFQILQWVYQRQADSFDVMTNLAKRHR 58 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 LL+ HF+I +I+ + S DG+RK+L + IETV IPEK TLCVS+Q Sbjct: 59 QLLSDHFTIGRLKILQTQDSSDGSRKFLFQ-----CADGASIETVLIPEKGHHTLCVSTQ 113 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC++ C FC T + L R+L A EI+ Q+ ++ + D + N Sbjct: 114 VGCAMGCKFCCTASMGLTRSLQANEIISQIRDVQATMED---------------PEHLRN 158 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASD-SMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 +V MGMGEPL N+DNVK+++ I +D GL FS RR+T+ST G VP +A VG++ V LA Sbjct: 159 LVFMGMGEPLANWDNVKQAMDIITDNDWGLRFSGRRVTISTVGLVPKMAAVGKDTRVKLA 218 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SL+A N++R+ ++P+N+K+P+E L+ AC+ +P L RR+TFEYV+LKG+NDSP A Sbjct: 219 VSLNAPDNEIRDQIMPVNKKHPIEELLQACKDFP-LRPGRRVTFEYVLLKGVNDSPAHAR 277 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L K+L P KINLIP+NP + D + + F + + Y+ +R +GLDI A Sbjct: 278 KLGKLLAHQPCKINLIPYNPHENSPFERPDPEAVDAFYKVLMDKNYTVIVRHSKGLDIKA 337 Query: 361 ACGQLKSLSK 370 ACGQLK+ ++ Sbjct: 338 ACGQLKAANQ 347 >gi|327441109|dbj|BAK17474.1| predicted Fe-S-cluster redox enzyme [Solibacillus silvestris StLB046] Length = 382 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 118/366 (32%), Positives = 193/366 (52%), Gaps = 25/366 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + +E++E L G R +QI++W+Y + ++ F+ MS++ + +R L Sbjct: 36 KPSVYSLRLDEMKEWLTANG----EKAFRAAQIYEWLYEKRVQTFEEMSNLPKALREKLE 91 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F++ + ++ S DGT K+L + IETV + ++CV++QVGC Sbjct: 92 AEFALTTLSTIIKQESKDGTIKFLFQLQD-----GYSIETVLMRHDYGNSICVTTQVGCR 146 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC + L R+L A EI + ++S+IV+M Sbjct: 147 IGCTFCASTLGGLKRHLMAGEI--------------VEQVVKVQQQLDETEERVSSIVIM 192 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+D + L I +D GL+ R IT+STSG VP I +E + + A+SLH Sbjct: 193 GIGEPFDNYDAMMNFLKIMNDDKGLNIGARHITVSTSGIVPKIYEFADEGMQINFAVSLH 252 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A + + R L+PI + Y LE L++A ++Y + R+TFEY ++ G ND+ A+ L K Sbjct: 253 APNQEARQKLMPIAKAYKLEELMEAVKYYTKKTGR-RVTFEYGLMSGQNDTEEVAMELAK 311 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 ++K I +NLIP N P +Y+ + + I F +K G + IR +G DI AACGQ Sbjct: 312 LIKNIKCHVNLIPINYVPERDYIRTSRSKIFAFERTLKEQGINVTIRREQGADIAAACGQ 371 Query: 365 LKSLSK 370 L++ + Sbjct: 372 LRAQER 377 >gi|295094726|emb|CBK83817.1| 23S rRNA m(2)A-2503 methyltransferase [Coprococcus sp. ART55/1] Length = 358 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 125/376 (33%), Positives = 205/376 (54%), Gaps = 30/376 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +++ L M EEL + G P R QI++W +V+ + M+++ + +R Sbjct: 11 IRQPDLKSMNMEELRNWVTGAGQPA----FRAKQIYQWFHVKLADGTEEMTNLPKSLREK 66 Query: 64 LNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 +++ + I +V IS DGT K+L R + IE+V + K ++C+SSQV Sbjct: 67 MDE-YGIYGVSVVTRLISEDDGTNKFLFRLHDGNV-----IESVLMKYKHGNSVCISSQV 120 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC + LVRNLTA E+L Q+ + + G+ ++SN+ Sbjct: 121 GCRMGCRFCASTIGGLVRNLTASEMLSQIYSIQKITGE-----------------RVSNV 163 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 V+MG GEPL NFDN+ + + + +D GL+ S+R +T+S+ G VP I R+ + + + A+ Sbjct: 164 VVMGTGEPLDNFDNLVRFIEMLTDENGLNISQRNVTVSSCGLVPEIKRLADMGLSITFAL 223 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA +++ R L+PI +Y + ++DAC +Y + RITFEY ++KG NDSP A Sbjct: 224 SLHAPNDEDRRALMPIANRYSIAEVLDACDYYFDRTGR-RITFEYSLVKGQNDSPEKACE 282 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++++G +NLIP NP +Y +D I F ++R+ ++ +R G DI AA Sbjct: 283 LARLIRGRNCHVNLIPVNPIKERDYERADNSAIENFKNILERNQITATVRRSMGRDIDAA 342 Query: 362 CGQLKSLSKRIPKVPR 377 CGQL+ + K + Sbjct: 343 CGQLRRKYEEENKTDK 358 >gi|225377867|ref|ZP_03755088.1| hypothetical protein ROSEINA2194_03526 [Roseburia inulinivorans DSM 16841] gi|225210305|gb|EEG92659.1| hypothetical protein ROSEINA2194_03526 [Roseburia inulinivorans DSM 16841] Length = 347 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 120/370 (32%), Positives = 204/370 (55%), Gaps = 29/370 (7%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M+ +K + + +EL + ++G R QI++W++V+ F M++IS+ + Sbjct: 1 MDQKEKTDIRSLNLKELTVFMEQLG----EKAFRAKQIYQWLHVKQAASFDEMTNISKAL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119 L ++ ++ + +IS DGTRK+L + IE+V++ K ++C+S Sbjct: 57 IEKLKENSHLVSIKQEAVQISKIDGTRKYLFLLDDGNV-----IESVFMRYKHGNSVCIS 111 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 SQVGC + C FC + LVR LT E+L Q+ G+ ++ Sbjct: 112 SQVGCRMGCRFCASTLDGLVRGLTPSEMLDQIYQIGRDTGE-----------------RV 154 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238 SN+V+MG GEP+ NFDN+ K + + +D GL+ S+R +T+ST G VP + + ++ + + Sbjct: 155 SNVVVMGTGEPMDNFDNLLKFIELLTDENGLNISQRNVTVSTCGIVPRMRELADKKLQIT 214 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLHA + + R L+P+ KY + +IDAC++Y + R+TFEY ++ G+ND+ D Sbjct: 215 LALSLHASTQEKRLELMPVANKYEIHEVIDACKYYFEQTGR-RVTFEYSLVGGVNDTDED 273 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 NL +++KGI +NLIP NP +Y+ D + F ++++G ++ IR G DI Sbjct: 274 VRNLCRLIKGINCHVNLIPVNPIKERDYVQPDVRVTTEFKNKLEKNGINATIRREMGRDI 333 Query: 359 LAACGQLKSL 368 ACGQL+ Sbjct: 334 DGACGQLRKR 343 >gi|331091583|ref|ZP_08340419.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae bacterium 2_1_46FAA] gi|330403610|gb|EGG83166.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae bacterium 2_1_46FAA] Length = 347 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 125/374 (33%), Positives = 202/374 (54%), Gaps = 29/374 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K+ + EEL++ L IG R+ QI+ W++ + F+ M+++S+ +R Sbjct: 1 MEKKDIRSYTLEELKKELESIG----EKPFRSKQIYSWLHEKLADSFEEMTNLSKALREK 56 Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L + + I +V+ ++S DGT K+L + +E+V + K ++C+SSQV Sbjct: 57 LEKDYEIYPVTMVERQVSKLDGTNKFLFALRDNHV-----VESVLMRYKHGNSVCISSQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC + L RNLT E+L Q+ + + G+ ++SNI Sbjct: 112 GCRMGCRFCASTLDGLARNLTPSEMLGQIYQIQKITGE-----------------RVSNI 154 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 V+MG GEPL N++N + + + SD GL S+R IT+ST G VPN+ R+ EE + LA+ Sbjct: 155 VIMGTGEPLDNYENFVRFIKLISDENGLHVSQRNITVSTCGIVPNMKRLAEEKFQITLAL 214 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH + + R L+P+ KY L+ +++AC +Y + RITFEY +++G+ND DA Sbjct: 215 SLHGSTQEKRRELMPVANKYELKEVLEACDNYFDRTGR-RITFEYSLVQGVNDREEDAGE 273 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 LI ILK +NLIP NP + +++ F +++SG + IR G DI A Sbjct: 274 LISILKPRNCHLNLIPVNPIKERNFEKPTRQNAEKFKNKLEKSGINVTIRREMGSDIDGA 333 Query: 362 CGQLKSLSKRIPKV 375 CGQL+ K+ Sbjct: 334 CGQLRRRYSEKSKI 347 >gi|315640014|ref|ZP_07895140.1| cfr family radical SAM enzyme [Enterococcus italicus DSM 15952] gi|315484223|gb|EFU74693.1| cfr family radical SAM enzyme [Enterococcus italicus DSM 15952] Length = 359 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 139/376 (36%), Positives = 219/376 (58%), Gaps = 28/376 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + EL + +L+ G + R +Q+W+W+Y + ++ F M+++S+ L+ Sbjct: 8 KASIYELPLNELTDWVLEQG----EKKFRATQLWEWLYQKRVQSFTQMTNLSKGFIEKLD 63 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + F I V + + DGT K+L + P + IETV + ++ ++CV++QVGC+ Sbjct: 64 ETFIINPLHQVVVQEAQDGTVKYLFQLPDNHM-----IETVMMTQEYGLSVCVTTQVGCN 118 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+LTA EI+ Q++L + L D + G ++S+IV+M Sbjct: 119 IGCTFCASGILKKQRDLTAGEIVAQIMLVQHYLDD------------KNEGSRVSHIVVM 166 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+ NV L+I +D+ GL+ R IT+STSG VP I E + V LAISLH Sbjct: 167 GIGEPFDNYQNVMNFLTIVNDAKGLAIGARHITVSTSGLVPKIREFAENGLQVNLAISLH 226 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +ND+R ++ INR +P+E L+DA +Y +N RITFEY+ML +ND A L Sbjct: 227 APNNDVRTSIMRINRTFPIEKLMDAVDYYLEKTNR-RITFEYIMLSHVNDRVEHAQQLAD 285 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK +NLIP+NP + Y S + D++ F + +K++G + IR G DI AA Sbjct: 286 LLKDKKKLTYVNLIPYNPVSEHDQYARSSRNDVMKFYDVLKKNGINCVIRKEYGTDIDAA 345 Query: 362 CGQLKSLSKRIPKVPR 377 CGQL+ SK++ +V R Sbjct: 346 CGQLR--SKQMKQVAR 359 >gi|332653341|ref|ZP_08419086.1| radical SAM enzyme, Cfr family [Ruminococcaceae bacterium D16] gi|332518487|gb|EGJ48090.1| radical SAM enzyme, Cfr family [Ruminococcaceae bacterium D16] Length = 352 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 132/369 (35%), Positives = 197/369 (53%), Gaps = 32/369 (8%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 M EEL L G P R QI++WIY RG+ F M+D+S+ +R L + + Sbjct: 1 MTLEELTAWLKSQGEPG----FRAKQIFRWIY-RGVTSFDEMTDLSKSLREKLKETCFLT 55 Query: 72 YPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130 P++ +++S DGT K+L G IETV + K T+CVSSQVGC + C+F Sbjct: 56 VPKVARKQVSQLDGTIKYLWEL-----GDGNCIETVLMRYKHGNTVCVSSQVGCRMGCAF 110 Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 C + VRNLT E++ QVL + G ISNIV+MG+GEP Sbjct: 111 CASTLAGKVRNLTPAEMVDQVLFTQ-----------------LDSGAPISNIVLMGIGEP 153 Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSND 249 L N+D V K L++ + GL+ R I+LST G V I ++ + + + L++SLHA ++ Sbjct: 154 LDNYDTVMKFLTLVNHPEGLNIGMRHISLSTCGLVDQIDKLAQRGLQLTLSVSLHAPDDE 213 Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309 R+ ++P+NR +E L+D CR Y + RRI++EY M+ G+NDS R A L +LKG+ Sbjct: 214 TRSKIMPVNRAVGVERLMDTCRRYFE-TTGRRISYEYAMIDGVNDSDRQADLLAGLLKGM 272 Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369 P +NLIP N S + + F + ++ G + +R G DI A+CGQL+ + Sbjct: 273 PGHVNLIPLNDVEESPLKPS--RRVAAFQKRLESHGVTVTVRRRLGSDIDASCGQLRRKA 330 Query: 370 KRIPKVPRQ 378 R+ Sbjct: 331 MGEQARERK 339 >gi|260584540|ref|ZP_05852286.1| radical SAM enzyme, Cfr family [Granulicatella elegans ATCC 700633] gi|260157563|gb|EEW92633.1| radical SAM enzyme, Cfr family [Granulicatella elegans ATCC 700633] Length = 375 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 128/381 (33%), Positives = 211/381 (55%), Gaps = 26/381 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K + G E+L + G + R Q+W W+Y + + F+ M+++S+++ LN Sbjct: 15 KPIIYGYPYEDLVAWFEEHG----EKKFRAGQLWDWLYRKRVTSFEEMTNLSKDLIAKLN 70 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + F+ ++ S DGTRK+L + IETV +P++ ++CV++QVGC+ Sbjct: 71 ETFTFPVLNEKIKQQSTDGTRKFLFELADGLL-----IETVLMPQEYGLSICVTTQVGCN 125 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G R+L A EI+ QV+ + L + + G ++S+IV+M Sbjct: 126 IGCTFCASGIIAKQRDLVAGEIVAQVMHVQRTLDEV------------APGDRVSHIVVM 173 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+DNV K L + + GL+ R IT+STSG P I +E + V LA+SLH Sbjct: 174 GIGEPFDNYDNVIKFLKVVNSDTGLAIGARHITVSTSGLAPKILDFAKEGLQVNLALSLH 233 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ND R+ ++ INRKYP+E++++A Y +N R+TFEY+ML +NDS A L Sbjct: 234 APDNDTRSKIMRINRKYPIEVVMEAINEYIRTTNR-RVTFEYIMLDHVNDSVEQAQQLAD 292 Query: 305 IL--KGIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +L K + +NLIP+N + Y S + +V F + +K++ + +R G DI AA Sbjct: 293 LLADKKRLSYVNLIPYNKVREHDQYERSSKDRVVAFYDVLKKNHINCVVRKEFGHDIEAA 352 Query: 362 CGQLKSLSKRIPKVPRQEMQI 382 CGQL+S + + +++ + Sbjct: 353 CGQLRSSQMKRDRDRKRKSEE 373 >gi|182420424|ref|ZP_02951644.1| radical SAM enzyme, Cfr family [Clostridium butyricum 5521] gi|237668483|ref|ZP_04528467.1| radical SAM enzyme, Cfr family [Clostridium butyricum E4 str. BoNT E BL5262] gi|182375710|gb|EDT73310.1| radical SAM enzyme, Cfr family [Clostridium butyricum 5521] gi|237656831|gb|EEP54387.1| radical SAM enzyme, Cfr family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 347 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 141/361 (39%), Positives = 205/361 (56%), Gaps = 30/361 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L+ +EL+ + + G R QI WIY +G+ DF+GM +I + + + L ++ Sbjct: 3 NLLDYTLDELKVWMSENGESA----FRGKQILSWIY-KGVMDFKGMKNIPKSLINKLEEN 57 Query: 68 FSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 F+I PEIV+ S DGT K+LL F + IE+V + K ++C+S+QVGC + Sbjct: 58 FTITMPEIVEVYKSELDGTEKFLLGFSDGNL-----IESVLMRYKHGNSICISTQVGCRM 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC + + VRNLT EIL +V+ ++ +G+ +ISNIV+MG Sbjct: 113 GCKFCASTIEGRVRNLTTGEILSEVIAVQNYIGE-----------------RISNIVLMG 155 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245 GEPL N+DNV K L I S GL+ +R ITLST G VP I + + E+ + LAISLHA Sbjct: 156 SGEPLDNYDNVVKFLEIVSADYGLNIGQRHITLSTCGIVPKIYELADKELSITLAISLHA 215 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 S++ R ++PI KY + L++ACR+Y + RITFEY ++K +ND DA L K+ Sbjct: 216 FSDEKRKEIMPIANKYTISELLEACRYYLNKTKR-RITFEYALVKDVNDGMEDAKALGKL 274 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L G+ +NLIP N + S +K I FSE ++ +G R G DI AACGQL Sbjct: 275 LSGMLCHVNLIPVNEIKENSFKRSSKKAIDDFSEILRNNGIEVTTRREMGSDINAACGQL 334 Query: 366 K 366 + Sbjct: 335 R 335 >gi|218886526|ref|YP_002435847.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|254807169|sp|B8DRU2|RLMN_DESVM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|218757480|gb|ACL08379.1| radical SAM enzyme, Cfr family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 367 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 139/367 (37%), Positives = 202/367 (55%), Gaps = 27/367 (7%) Query: 7 ESLIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 ++ + +ELE + +G P R R Q+W+W++ + R F M+++S+ R L Sbjct: 2 IDILNLTYDELEAWMTGTLGEP----RFRARQVWQWLWQKNARSFDAMTNVSKATRARLA 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVSS 120 + I +PE+ K S DGT K+LL + +ETV IP +S R T C+S Sbjct: 58 EAARITWPEVRTVKTSSDGTVKFLLALADGAL-----VETVLIPSESREGKVRMTQCLSC 112 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC++ C+FC TG+ RN+T EIL QVL+AR LGD I + Sbjct: 113 QVGCAMGCTFCSTGSMGFERNMTMAEILGQVLVAREHLGDDRPDHPI-----------VR 161 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+V MGMGEPL N + V +SL +D GL FS RRIT+ST G + +GE LA Sbjct: 162 NLVFMGMGEPLLNLNEVMRSLRTLNDEFGLCFSPRRITVSTCGIEKGLRELGESGLAFLA 221 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA + ++R ++P ++ L+ L+ A YP L RITFEY++L G+NDS A Sbjct: 222 VSLHAPNQEVRARIMPRAARWTLDDLMAALESYP-LKTRERITFEYLLLGGVNDSIDHAR 280 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L++++ AK+NLI +NP G Y Q I+ F + + ++ IR +G DI A Sbjct: 281 ELVRLVSRTKAKLNLIVYNPAEGLPYEAPSQARILAFEQYLWSKNVTAIIRKSKGQDIKA 340 Query: 361 ACGQLKS 367 ACGQLK+ Sbjct: 341 ACGQLKA 347 >gi|146321533|ref|YP_001201244.1| ribosomal RNA large subunit methyltransferase N [Streptococcus suis 98HAH33] gi|253752360|ref|YP_003025501.1| radical SAM superfamily protein [Streptococcus suis SC84] gi|253754186|ref|YP_003027327.1| radical SAM superfamily protein [Streptococcus suis P1/7] gi|253756120|ref|YP_003029260.1| radical SAM superfamily protein [Streptococcus suis BM407] gi|205829908|sp|A4W3A5|RLMN_STRS2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|145692339|gb|ABP92844.1| Predicted Fe-S-cluster redox enzyme [Streptococcus suis 98HAH33] gi|251816649|emb|CAZ52290.1| radical SAM superfamily protein [Streptococcus suis SC84] gi|251818584|emb|CAZ56418.1| radical SAM superfamily protein [Streptococcus suis BM407] gi|251820432|emb|CAR47102.1| radical SAM superfamily protein [Streptococcus suis P1/7] gi|292558962|gb|ADE31963.1| Predicted Fe-S-cluster redox enzyme [Streptococcus suis GZ1] gi|319758764|gb|ADV70706.1| Fe-S-cluster redox protein [Streptococcus suis JS14] Length = 370 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 129/373 (34%), Positives = 211/373 (56%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + L + +L+ G + R +QIW+W+Y ++ F M+++ + + L Sbjct: 2 KPSIYAFSQANLVDWILENG----EKKFRATQIWEWLYRSRVQSFAEMTNLPKSLIEKLE 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +HF + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 EHFVVNPLKQRIVQESKDGTIKYLFELPDGML-----IETVLMHQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G R+LT+ EI+ Q++L + L + + ++S+IV+M Sbjct: 113 IGCTFCASGLIPKQRDLTSGEIVAQIMLVQKYLDE------------RNQNERVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEPL N+DNV L + +D GL+ R IT+STSG P I E + V LA+SLH Sbjct: 161 GIGEPLDNYDNVMTFLRVVNDDKGLAIGARHITVSTSGLAPKIREFAREGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +NDLR+ ++ INRK+P+E+L +A Y ++N R+TFEY+ML +ND A L Sbjct: 221 APNNDLRSSIMRINRKFPIEVLFEAIEDYIKVTNR-RVTFEYIMLNEVNDGVEQAQELAD 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 + K I + INLIP+NP + Y S ++ + F + +K++G + +R G DI AA Sbjct: 280 LTKNIRKLSYINLIPYNPVSEHDQYSRSTKERTLAFFDVLKKNGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTLKKDR 352 >gi|188590485|ref|YP_001920564.1| radical SAM enzyme, Cfr family [Clostridium botulinum E3 str. Alaska E43] gi|251777897|ref|ZP_04820817.1| radical SAM enzyme, Cfr family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|205829736|sp|B2V4B5|RLMN_CLOBA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|188500766|gb|ACD53902.1| radical SAM enzyme, Cfr family [Clostridium botulinum E3 str. Alaska E43] gi|243082212|gb|EES48102.1| radical SAM enzyme, Cfr family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 347 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 127/372 (34%), Positives = 202/372 (54%), Gaps = 30/372 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++++ EEL + + R QI WIY + +R+F M ++ + + L + Sbjct: 2 KNILDYTLEELTLWMKEN----NESSFRAKQIMSWIY-KDVRNFSDMRNMPKSLIAKLEE 56 Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +F I PEI + S DGT K+L +F + IE+V + K ++C+S+Q+GC Sbjct: 57 NFEISLPEIEEIYKSELDGTEKFLFKFSDGNL-----IESVLMRYKHGNSICISTQIGCR 111 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC + +RNLT EIL Q+L+ ++ +G+ +ISN+V+M Sbjct: 112 MGCKFCASTIDGRIRNLTTGEILSQILVVQNYIGE-----------------RISNVVLM 154 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244 G GEPL N++NV K L + S GL+ +R ITLST G VP I + + E+ + LAISLH Sbjct: 155 GSGEPLDNYENVMKFLEVVSAEYGLNIGQRHITLSTCGIVPKIYELADKELSITLAISLH 214 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A S++ R ++PI KY ++ +++AC+++ + RITFEY ++K +NDS DA L K Sbjct: 215 AFSDEKRKEIMPIANKYSIDEILNACKYFINKTKR-RITFEYSLVKDVNDSKEDARALGK 273 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKG+ +NLIP N + S ++ I F+ + G +R G DI AACGQ Sbjct: 274 LLKGMLCHVNLIPVNEIKERTFKRSSKETIQDFANILSNLGIEVTVRREMGSDINAACGQ 333 Query: 365 LKSLSKRIPKVP 376 L+ + + Sbjct: 334 LRRSYIKTQETR 345 >gi|166032715|ref|ZP_02235544.1| hypothetical protein DORFOR_02430 [Dorea formicigenerans ATCC 27755] gi|166027072|gb|EDR45829.1| hypothetical protein DORFOR_02430 [Dorea formicigenerans ATCC 27755] Length = 356 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 126/378 (33%), Positives = 197/378 (52%), Gaps = 29/378 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K+ ++ +EL++ + IG R QI+ W++ + +F M+++S+ +R Sbjct: 1 MEKKDIVSYNYDELQDEIKSIG----EKPFRAKQIYAWLHEKLAEEFDEMTNLSKALREK 56 Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L+Q + I ++V +IS D T K+L IE+V + ++C+SSQV Sbjct: 57 LDQAYEIRKVKVVAHQISKVDPTEKFLFELED-----GNRIESVLMKYNYGNSVCISSQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC + L RNLT E+L Q+ + + G+ ++SN+ Sbjct: 112 GCRMGCRFCASTLDGLERNLTTSEMLRQIYQIQKMTGE-----------------RVSNV 154 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAI 241 V+MG GEPL N+DN K + + SD GL+ S+R IT ST G VPNI R+ E + + LA+ Sbjct: 155 VVMGTGEPLDNYDNFVKFIHMLSDEHGLNISQRSITASTCGIVPNIHRLAGEGLQITLAL 214 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH S + R L+PI KY L +++AC Y + R+TFEY ++ +ND P D Sbjct: 215 SLHGSSQEKRKKLMPIANKYELSEVLEACDDYYKQTGR-RVTFEYSLVADVNDGPDDVKE 273 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ILK +NLIP NP + D K + F ++++G + IR RG DI A Sbjct: 274 LTGILKHRNCHLNLIPVNPIKERNFKKPDSKKAMEFQNKLEKNGINVTIRRERGSDIDGA 333 Query: 362 CGQLKSLSKRIPKVPRQE 379 CGQL+ + + E Sbjct: 334 CGQLRRRYGAVKEERPDE 351 >gi|94268941|ref|ZP_01291330.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93451405|gb|EAT02257.1| conserved hypothetical protein [delta proteobacterium MLMS-1] Length = 345 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 153/367 (41%), Positives = 207/367 (56%), Gaps = 22/367 (5%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN K L + EL + + + R QI+ W+Y DF M+DI++ V Sbjct: 1 MNN-PKTDLKNLTLPELTAWVETLNLKP----FRARQIFSWLYRPDFSDFAQMTDIAKHV 55 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R LL + + E+ S DGT K+ R + IE+V IPE+ R TLCVSS Sbjct: 56 RALLAEKATFSRLAAAKEEHSTDGTVKFAFRLSDGHL-----IESVLIPEEDRHTLCVSS 110 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC++ C+FC TGT +RNLT E++ QV A L +++ Sbjct: 111 QVGCAMGCNFCLTGTMGFIRNLTVAEMVGQVDQAAHWLWQRGARSG-----------RLN 159 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+V MGMGEPL NFDN+ K+++I + G S RRIT+ST G VP + +GE++ V LA Sbjct: 160 NLVFMGMGEPLLNFDNLIKAINILMEQRGHDLSGRRITVSTCGIVPRMKELGEKVPVNLA 219 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA + R L+P+NR YPL L+ ACR YP L RRI EY +L GINDSP A Sbjct: 220 VSLHAADHATREQLMPVNRTYPLAELLQACRQYP-LPPRRRIMIEYALLAGINDSPAAAR 278 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L+K L GI KIN++PFN P Y C D I F + ++R+G+++ +RT RG DI A Sbjct: 279 LLVKQLHGIRCKINILPFNETPAFPYRCPDPATIEAFRQILRRAGHTTLLRTSRGADIAA 338 Query: 361 ACGQLKS 367 ACGQL + Sbjct: 339 ACGQLAA 345 >gi|332686368|ref|YP_004456142.1| ribosomal RNA large subunit methyltransferase N [Melissococcus plutonius ATCC 35311] gi|332370377|dbj|BAK21333.1| ribosomal RNA large subunit methyltransferase N [Melissococcus plutonius ATCC 35311] Length = 357 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 125/372 (33%), Positives = 216/372 (58%), Gaps = 26/372 (6%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 + ++K+++ G+ +E L L+ G + R +Q+W+W+Y++ + F+ M+++S+ + Sbjct: 4 DIMQKQTIYGLTKEALVNWFLENG----EKKFRANQVWEWLYIKRVESFEDMTNLSKTLI 59 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 LL+QHF I + + DGT K+L P + + IETV + ++ ++CV++Q Sbjct: 60 SLLDQHFVIQVLRQTIIQEAKDGTVKYLFELPDKNM-----IETVLMRQEYGLSVCVTTQ 114 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC++ C+FC +G K RNLTA EI+ Q+++ + +G ++S+ Sbjct: 115 VGCNMGCTFCASGLLKKNRNLTAGEIVAQIMMVQRYFDQ------------RKLGERVSH 162 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240 +V+MG+GEP N++ + + + I +D GL+ R +T+ST G VP I + + + V LA Sbjct: 163 VVVMGIGEPFDNYEQLMQFIQIINDEKGLAIGARHLTVSTCGLVPQIKKFAQTGLQVNLA 222 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ISLHA +N +R+ ++ IN +P+E L+ Y +N R+TFEY+ML+ +ND P A Sbjct: 223 ISLHASNNQIRSSIMRINHTFPIEKLMQTIDEYIEQTNR-RVTFEYIMLQKVNDYPEHAQ 281 Query: 301 NLIKILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 L +LK A +NLIP+NP + Y S++ ++ F + +K++G + IR G D Sbjct: 282 ELADLLKDKKKLAYVNLIPYNPVNEHDQYCRSEKASVLKFYDILKKNGINCVIRKEHGTD 341 Query: 358 ILAACGQLKSLS 369 I AACGQL+S Sbjct: 342 IDAACGQLRSKQ 353 >gi|317472521|ref|ZP_07931841.1| cfr family radical SAM enzyme [Anaerostipes sp. 3_2_56FAA] gi|316899998|gb|EFV21992.1| cfr family radical SAM enzyme [Anaerostipes sp. 3_2_56FAA] Length = 354 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 122/377 (32%), Positives = 207/377 (54%), Gaps = 31/377 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L M EELE A+ ++G + R QI++W + R M+++ + ++ L + Sbjct: 2 RDLKSMTLEELELAVKELG----EKKFRAKQIFEWFHKRLASSLDEMNNLPKNLKEKLQE 57 Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + V+ +S DGTRK+L + + IE+V + K ++C+SSQ GC Sbjct: 58 KYEAAELKEVETYVSRIDGTRKYLFQLNDGNM-----IESVLMKYKHGNSVCISSQAGCR 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC + L RNL E+L Q+ + G+ ++SN+V+M Sbjct: 113 MGCRFCASTLGGLDRNLLPSEMLGQIYYIQKDTGE-----------------RVSNVVVM 155 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G GEPL N++N+ + + + +D GL+ S+R +T+ST G VP I + +E + + LAISLH Sbjct: 156 GTGEPLDNYENLLRFIRLLTDEKGLNLSQRNLTVSTCGLVPKIRELADEKLQMTLAISLH 215 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++++R L+P+ +Y +E L+ AC++Y + RITFEY ++ +NDSP++A L + Sbjct: 216 ASNDEMRKSLMPVANQYSMEDLLAACKYYFDRTGR-RITFEYSLVAEVNDSPQNAKELCR 274 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 L G P +NLIP NP ++ S + + F ++++ + IR G DI AACGQ Sbjct: 275 FLGGFPCHVNLIPVNPIKERDFRQSMPEFVNDFKNILEKNRVNVTIRREMGRDINAACGQ 334 Query: 365 LKSLSKRIPKVPRQEMQ 381 L+ K++ V +QE++ Sbjct: 335 LR--RKKLNSVEKQEIR 349 >gi|148263644|ref|YP_001230350.1| ribosomal RNA large subunit methyltransferase N [Geobacter uraniireducens Rf4] gi|205829769|sp|A5GEC2|RLMN_GEOUR RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|146397144|gb|ABQ25777.1| 23S rRNA m(2)A-2503 methyltransferase [Geobacter uraniireducens Rf4] Length = 343 Score = 416 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 144/371 (38%), Positives = 210/371 (56%), Gaps = 29/371 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K + +ELE + G R R QI+KW+Y + R+F M+++S++ R Sbjct: 1 MEKVDIKNFTLQELEAYIAGQG----KERFRAKQIFKWLYQQDAREFADMTNLSKDFRQE 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L + I + + S DGT+K+L R +E+V IP++ R TLC+SSQVG Sbjct: 57 LEKTAWISNLDAEAVEASADGTKKYLFRL-----ADGNAVESVLIPDEDRTTLCISSQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C FC TGT KL RNLT EI+ QV + + NIV Sbjct: 112 CAMGCEFCLTGTFKLTRNLTTAEIVNQVCAVKRQ-------------------EPVRNIV 152 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MGMGEPL N NV +L I +D G FS R++T+STSG VP +A +G + V LA+SL Sbjct: 153 FMGMGEPLANLKNVVGALKILTDPDGFQFSTRKVTVSTSGLVPEMAELGASVTVNLAVSL 212 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 +A ++++R+ ++PINR+YPL+ L+ AC+ +P S IT EYVM++G+NDS DA L+ Sbjct: 213 NATTDEVRDRIMPINRRYPLKELLAACKAFPLPSRRW-ITIEYVMIRGVNDSLDDAKRLV 271 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +++ IP+K+NLIPFN GC + Q I F + + + R+ RG DI AACG Sbjct: 272 RLISNIPSKVNLIPFNEHDGCTFQAPTQDSIDKFHKFLLDKHVTVITRSSRGSDISAACG 331 Query: 364 QLKSLSKRIPK 374 QLK + K Sbjct: 332 QLKGRLDKAVK 342 >gi|313899948|ref|ZP_07833450.1| 23S rRNA m2A2503 methyltransferase [Clostridium sp. HGF2] gi|312955256|gb|EFR36922.1| 23S rRNA m2A2503 methyltransferase [Clostridium sp. HGF2] Length = 351 Score = 416 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 127/369 (34%), Positives = 200/369 (54%), Gaps = 25/369 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +SL +++ + L+ G + R QI++W+Y + MSD+S++ R L Q Sbjct: 2 KSLYDFTYDQMGDMALEQGW----KKFRAHQIFQWLYRKRAVSIDDMSDLSKDTRETLKQ 57 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 FS+ ++ D++++ DGT K+L + IE+V + ++CV+SQVGC++ Sbjct: 58 QFSLTPLKLRDKQVASDGTTKYLFALEDGSL-----IESVLMQFDYGKSICVTSQVGCNM 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC +G K RNLT+ E++ QVL + + ++S+IV+MG Sbjct: 113 ACAFCASGLTKKKRNLTSGEMVAQVLYVQR--------------DLDKQEDRLSHIVVMG 158 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHA 245 GEP N+++V LS + GL R IT+ST G VP I E LAISLHA Sbjct: 159 TGEPFDNYEHVMNFLSTVNHDRGLGIGARHITISTCGVVPKIYEFAKEHTQYNLAISLHA 218 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +N+LR+ L+P+NR YPLE L++A ++Y +N R+TFEY++L+G+ND L K+ Sbjct: 219 PNNELRDRLMPVNRAYPLEELMEAIQYYARENNR-RLTFEYILLRGVNDQKEHVAQLAKL 277 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG+ A +NLIP+N + D + F + + + G IR G DI AACGQL Sbjct: 278 LKGLNAYVNLIPYNAVDENGFQGVDHAHAMVFYDALMKQGVRCTIRKEHGADIDAACGQL 337 Query: 366 KSLSKRIPK 374 + + + Sbjct: 338 RVKHLKKEQ 346 >gi|223934018|ref|ZP_03625972.1| radical SAM enzyme, Cfr family [Streptococcus suis 89/1591] gi|302024309|ref|ZP_07249520.1| ribosomal RNA large subunit methyltransferase N [Streptococcus suis 05HAS68] gi|330833298|ref|YP_004402123.1| radical SAM enzyme, Cfr family [Streptococcus suis ST3] gi|223897307|gb|EEF63714.1| radical SAM enzyme, Cfr family [Streptococcus suis 89/1591] gi|329307521|gb|AEB81937.1| radical SAM enzyme, Cfr family [Streptococcus suis ST3] Length = 370 Score = 416 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 129/373 (34%), Positives = 211/373 (56%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + L + +L+ G + R +QIW+W+Y ++ F M+++ + + L Sbjct: 2 KPSIYAFSQANLVDWILENG----EKKFRATQIWEWLYRSRVQSFAEMTNLPKSLIEKLE 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +HF + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 EHFVVNPLKQRIVQESKDGTIKYLFELPDGML-----IETVLMHQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G R+LT+ EI+ Q++L + L + + ++S+IV+M Sbjct: 113 IGCTFCASGLIPKQRDLTSGEIVAQIMLVQKYLDE------------RNQNERVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLH 244 G+GEPL N+DNV L + +D GL+ R IT+STSG P I E + V LA+SLH Sbjct: 161 GIGEPLDNYDNVMTFLRVVNDDKGLAIGARHITVSTSGLAPKIREFACEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +NDLR+ ++ INRK+P+E+L +A Y ++N R+TFEY+ML +ND A L Sbjct: 221 APNNDLRSSIMRINRKFPIEVLFEAIEDYIKVTNR-RVTFEYIMLNEVNDGVEQAQELAD 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 + K I + INLIP+NP + Y S ++ + F + +K++G + +R G DI AA Sbjct: 280 LTKNIRKLSYINLIPYNPVSEHDQYSRSTKERTLAFFDVLKKNGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTLKKDR 352 >gi|293402260|ref|ZP_06646398.1| radical SAM enzyme, Cfr family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304367|gb|EFE45618.1| radical SAM enzyme, Cfr family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 352 Score = 416 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 128/373 (34%), Positives = 198/373 (53%), Gaps = 25/373 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +SL E++ ++ + + R QI++W+Y + + MSD+S+E R +L Sbjct: 2 KSLYDFNYEQM----AELALSHEWKKFRGHQIFQWLYRKRVTSIDEMSDLSKETREILKA 57 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 ++++ + D+++S DGT K+L + IE+V + ++CV+SQVGC++ Sbjct: 58 NYALKPLTLKDKQVSSDGTTKYLFALEDGSL-----IESVLMQFDYGKSICVTSQVGCNM 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 +C+FC +G K RNLT+ E++ QV+ + + ++S+IV+MG Sbjct: 113 SCAFCASGLTKKKRNLTSGEMVAQVMYVQQ--------------DLDKQEERLSHIVVMG 158 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHA 245 GEP N++NV LS + GL R IT+ST G VP I E LAISLHA Sbjct: 159 TGEPFDNYENVMNFLSTVNHDRGLGIGARHITISTCGVVPKIYEFSKEHTQYNLAISLHA 218 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +N LR+ L+PIN YPLE L+ A R Y +N R+TFEY++L+G+ND L K+ Sbjct: 219 PNNTLRDELMPINHAYPLEELMKAIRQYAAENNR-RLTFEYILLRGVNDQKEHVKQLAKL 277 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G+ A +NLIP+N + D + F + + + G IR G DI AACGQL Sbjct: 278 LRGLNAYVNLIPYNAVDEKGFQGVDHAHAMVFYDALMKEGIRCTIRKEHGADIDAACGQL 337 Query: 366 KSLSKRIPKVPRQ 378 + R RQ Sbjct: 338 RVKHLRKEAKERQ 350 >gi|283769598|ref|ZP_06342494.1| radical SAM enzyme, Cfr family [Bulleidia extructa W1219] gi|283103866|gb|EFC05252.1| radical SAM enzyme, Cfr family [Bulleidia extructa W1219] Length = 348 Score = 416 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 129/366 (35%), Positives = 203/366 (55%), Gaps = 25/366 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +++ + +LEE +L++G + R Q++ W+Y + + F+ M+D+ L Sbjct: 2 QTIYDLTLHQLEELVLELG----QKKYRAKQLFTWLYRKRVLSFEEMTDLPTSFIEELKS 57 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 HF I+ + V ++S DGTRK+L IETV + +LCV+SQ+GC++ Sbjct: 58 HFIIMPVKEVMRQVSKDGTRKYLFSLED-----GSSIETVLMHFNFGESLCVTSQLGCNM 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC +G K R+L+ EIL Q++ + + S +ISNIV+MG Sbjct: 113 GCTFCASGLLKKQRDLSQGEILGQLMYVQKE--------------LDSENLRISNIVVMG 158 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245 GEP N+D+V A+ +GL R IT+ST G VP I + LAISLHA Sbjct: 159 TGEPFDNYDHVLGFCKTANQDIGLGIGARHITISTCGIVPKIREFSKSHYQYNLAISLHA 218 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + +LR+ L+PIN +YPL L+D+ + Y SN RRITFEY++L G+NDS + A+ L + Sbjct: 219 PNQELRDKLMPINHRYPLSELMDSLKEYSE-SNHRRITFEYILLHGVNDSDQHAIELAHL 277 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 ++G+ A +NLIP+N Y +D K + F + + + G + +R G DI AACGQL Sbjct: 278 IRGMNAYVNLIPYNKVDEKGYESTDDKTALHFYDVLMKHGVKATLRQKHGDDIDAACGQL 337 Query: 366 KSLSKR 371 ++ ++ Sbjct: 338 RAKHEK 343 >gi|94990786|ref|YP_598886.1| ribosomal RNA large subunit methyltransferase N [Streptococcus pyogenes MGAS10270] gi|123257976|sp|Q1JG02|RLMN_STRPD RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|94544294|gb|ABF34342.1| Radical SAM family enzyme [Streptococcus pyogenes MGAS10270] Length = 359 Score = 416 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 128/373 (34%), Positives = 209/373 (56%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+EL E ++ G + R +QIW W+Y + ++ F+ M++IS++ +LN Sbjct: 2 KPSIYSLTRDELIEWAVERG----QKQFRATQIWDWLYKKRVQSFEEMTNISKDFVSILN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DSFCVNPLKQRVVQESADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L + EI Q++L + D G ++S++V+M Sbjct: 113 IGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDD------------RKQGERVSHVVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+ NV L + +D GL+ R IT+STSG I E + V LA+SLH Sbjct: 161 GIGEPFDNYKNVMCFLRVINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +NDLR+ ++ +NR +PLE L A +Y +N R+TFEY+ML +NDS + A L Sbjct: 221 APNNDLRSSIMRVNRSFPLEKLFSAIEYYIEKTNR-RVTFEYIMLNEVNDSIKQAQELAD 279 Query: 305 ILK--GIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 + K + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA Sbjct: 280 LTKTIRKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDVLKKNGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSKTMKKDR 352 >gi|225868978|ref|YP_002744926.1| radical SAM superfamily protein [Streptococcus equi subsp. zooepidemicus] gi|259491996|sp|C0MD67|RLMN_STRS7 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|225702254|emb|CAX00012.1| radical SAM superfamily protein [Streptococcus equi subsp. zooepidemicus] Length = 360 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 125/373 (33%), Positives = 201/373 (53%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ G+ R+EL + G R +QIW W+Y + ++ F M++IS+E +L Sbjct: 2 KPSIYGLTRDELIAWAIDNG----QKAFRATQIWDWLYRKRVQSFDEMTNISKEFLAILK 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F I + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DSFCINPLKQRVAQESADGTVKYLFELPDGML-----IETVLMRQHYGQSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L + EI Q+++ ++ ++S++V+M Sbjct: 113 IGCTFCASGLIKKQRDLNSGEITAQIMMVQNYFDQ------------RGQDERVSHVVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+ NV L +D GL+ R IT+STSG I E + V LA+SLH Sbjct: 161 GIGEPFDNYQNVMTFLRTINDDHGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ INR +PL+ L A +Y +N R+TFEY+ML +ND A L Sbjct: 221 APNNELRSSIMRINRSFPLDKLFSAIEYYIETTNR-RVTFEYIMLNKVNDGVEQAQELAD 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 + K I + +NLIP+NP + Y S ++ + F + +K++G + +R G DI AA Sbjct: 280 LTKRIRKLSYVNLIPYNPVSEHDQYSRSPKERVAAFYDILKKNGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKKDR 352 >gi|71892305|ref|YP_278039.1| putative pyruvate formate lyase activating enzyme 2 [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|123761466|sp|Q492D9|RLMN_BLOPB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|71796411|gb|AAZ41162.1| putative pyruvate formate lyase activating enzyme 2 [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 373 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 160/363 (44%), Positives = 208/363 (57%), Gaps = 18/363 (4%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ M +EEL K+G R+ QI +WIY DF M++IS+ ++ L Sbjct: 12 KKVNLLNMNKEELLIFFDKLG----EKPFRSHQIMRWIYHYYCDDFNYMTNISKSLKERL 67 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q I P I+ E++S DGT KW ++ +IETVYIPE R TLCVSSQ+GC Sbjct: 68 KQIAEIRAPIIIKEQLSSDGTIKWAMKI------DEQQIETVYIPENKRTTLCVSSQIGC 121 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 L CSFC T Q RNL EI+ QV A L+ + + I + I+NIV Sbjct: 122 PLGCSFCGTAQQGFNRNLNVSEIIGQVWRAAQLIN------LNKKIKIKNNRFPITNIVF 175 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N NV ++ I D G SKR ITLST+G VP I ++ I + LAISLH Sbjct: 176 MGMGEPLLNIVNVVSAIRIILDDFGFKLSKRHITLSTAGIVPGIEKLKNMIDIPLAISLH 235 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPG--LSNARRITFEYVMLKGINDSPRDALNL 302 A ++ +RN ++PIN+KY + +++A R Y SN RIT EYV+LK IND A L Sbjct: 236 APNDIIRNKIMPINKKYNINSVLEAARRYSMDTKSNHGRITIEYVLLKNINDDVLHAHQL 295 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K L+GIP KINLIP+NP P Y CS Q + F + + + + IR RG DI AAC Sbjct: 296 AKQLQGIPCKINLIPWNPIPNIRYACSSQIRMRAFLKVLLKYNIVTIIRKIRGADINAAC 355 Query: 363 GQL 365 GQL Sbjct: 356 GQL 358 >gi|238916657|ref|YP_002930174.1| hypothetical protein EUBELI_00719 [Eubacterium eligens ATCC 27750] gi|259491988|sp|C4Z523|RLMN_EUBE2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|238872017|gb|ACR71727.1| Hypothetical protein EUBELI_00719 [Eubacterium eligens ATCC 27750] Length = 350 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 114/364 (31%), Positives = 199/364 (54%), Gaps = 29/364 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + + +EL + +G + R Q+++W++ + F +++S +R L + Sbjct: 2 TDIKSLNYDELVTYMAGLG----EKKFRAGQLYQWMHEKLADSFDECTNLSNALRQKLKE 57 Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + E V + S DGT K+L R +E+V + ++C+SSQVGC Sbjct: 58 TSEYVCLEPVRVQHSKLDGTEKYLFRLSD-----GNYVESVLMKYHHGNSVCISSQVGCR 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC + VR+L E+L Q+ + + G+ ++SN+V+M Sbjct: 113 MGCRFCASTLNGKVRDLRPSEMLDQIYRIQKITGE-----------------RVSNVVVM 155 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244 G GEP+ N+DN+ K + + +D GL+ S+R IT+S+ G VP + + + ++ + LAISLH Sbjct: 156 GSGEPMDNYDNLIKFIELLNDERGLNISQRNITVSSCGIVPKLKELADLKLQITLAISLH 215 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +++LR ++PI KY +E ++D CR+Y + RI+FEY ++KG+NDS A LI+ Sbjct: 216 APNDELRKTMMPIANKYSIEEIMDVCRYYIECTGR-RISFEYSLVKGVNDSMECAKQLIE 274 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 ++KG+ INLIP NP +Y + ++++ F ++++G + IR G DI ACGQ Sbjct: 275 LVKGMNCHINLIPVNPIKERDYKQTGKEEVYAFKNKLEKNGINVTIRREMGRDIDGACGQ 334 Query: 365 LKSL 368 L++ Sbjct: 335 LRNK 338 >gi|153855358|ref|ZP_01996507.1| hypothetical protein DORLON_02521 [Dorea longicatena DSM 13814] gi|149752178|gb|EDM62109.1| hypothetical protein DORLON_02521 [Dorea longicatena DSM 13814] Length = 356 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 129/368 (35%), Positives = 205/368 (55%), Gaps = 29/368 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K+ + +EL+E +L IG R+ QI++W++V+ DF M+++S+ +R Sbjct: 1 MSKKDICSYNYDELKEEMLVIG----EKAFRSKQIYEWLHVKLADDFDEMTNLSKALREK 56 Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L +++ I +++D +IS D T K+L + +E+V + ++C+SSQV Sbjct: 57 LKKNYEIRKVKMIDHQISKEDPTEKFLFELEDGNM-----VESVLMKYNYGNSVCISSQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC + LVR+L E+L Q+ + + G+ ++SN+ Sbjct: 112 GCRMGCRFCASTIGGLVRSLEPSEMLRQIYHIQKITGE-----------------RVSNV 154 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 V+MG GEPL N+DN K + + SD GL+ S+R IT ST G VPN+ R+ EE + + LA+ Sbjct: 155 VVMGTGEPLDNYDNFVKFIHMLSDEHGLNISQRNITASTCGIVPNMRRLAEEGLQITLAL 214 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH S + R L+P+ KY L ++DAC +Y + RITFEY ++ G+ND P D Sbjct: 215 SLHGSSQEKRKKLMPVANKYDLSEVLDACDYYFDKTGR-RITFEYSLVAGVNDQPDDIRE 273 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ILKG +NLIP NP ++ D+K+ + F ++++G + IR RG DI A Sbjct: 274 LTTILKGRNCHLNLIPVNPIKERDFKKPDRKNAMEFKNKLEKNGINVTIRRERGSDIDGA 333 Query: 362 CGQLKSLS 369 CGQL+ Sbjct: 334 CGQLRRRH 341 >gi|225870018|ref|YP_002745965.1| radical SAM superfamily protein [Streptococcus equi subsp. equi 4047] gi|254807212|sp|C0MBZ4|RLMN_STRE4 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|225699422|emb|CAW92902.1| radical SAM superfamily protein [Streptococcus equi subsp. equi 4047] Length = 360 Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 125/373 (33%), Positives = 202/373 (54%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ G+ R+EL + G R +QIW W+Y + ++ F M++IS+E +L Sbjct: 2 KPSIYGLTRDELIAWAIDNG----QKAFRATQIWDWLYRKRVQSFDEMTNISKEFVAILK 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F I + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DSFCINPLKQRVAQESADGTVKYLFELPDGML-----IETVLMRQHYGQSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L + EI Q+++ ++ + ++S++V+M Sbjct: 113 IGCTFCASGLIKKQRDLNSGEITAQIMMVQNYFDK------------RAQDERVSHVVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+ NV L +D GL+ R IT+STSG I E + V LA+SLH Sbjct: 161 GIGEPFDNYQNVMTFLRTINDDHGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ INR +PL+ L A +Y +N R+TFEY+ML +ND A L Sbjct: 221 APNNELRSSIMRINRSFPLDKLFSAIEYYIETTNR-RVTFEYIMLNKVNDGVEQAQELAD 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 + K I + +NLIP+NP + Y S ++ + F + +K++G + +R G DI AA Sbjct: 280 LTKRIRKLSYVNLIPYNPVSEHDQYSRSPKERVAAFYDILKKNGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKKDR 352 >gi|15675432|ref|NP_269606.1| ribosomal RNA large subunit methyltransferase N [Streptococcus pyogenes M1 GAS] gi|21910720|ref|NP_664988.1| ribosomal RNA large subunit methyltransferase N [Streptococcus pyogenes MGAS315] gi|28895590|ref|NP_801940.1| ribosomal RNA large subunit methyltransferase N [Streptococcus pyogenes SSI-1] gi|56807972|ref|ZP_00365785.1| COG0820: Predicted Fe-S-cluster redox enzyme [Streptococcus pyogenes M49 591] gi|71903862|ref|YP_280665.1| ribosomal RNA large subunit methyltransferase N [Streptococcus pyogenes MGAS6180] gi|71911074|ref|YP_282624.1| ribosomal RNA large subunit methyltransferase N [Streptococcus pyogenes MGAS5005] gi|94994765|ref|YP_602863.1| ribosomal RNA large subunit methyltransferase N [Streptococcus pyogenes MGAS10750] gi|209559696|ref|YP_002286168.1| ribosomal RNA large subunit methyltransferase N [Streptococcus pyogenes NZ131] gi|81620716|sp|Q99YU5|RLMN_STRP1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|81706663|sp|Q7CEX7|RLMN_STRP3 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|122986830|sp|Q1J5R7|RLMN_STRPF RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123747764|sp|Q48SK0|RLMN_STRPM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807217|sp|B5XMB1|RLMN_STRPZ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|13622621|gb|AAK34327.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS] gi|21904923|gb|AAM79791.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315] gi|28810839|dbj|BAC63773.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1] gi|71802957|gb|AAX72310.1| radical SAM family enzyme [Streptococcus pyogenes MGAS6180] gi|71853856|gb|AAZ51879.1| radical SAM family enzyme [Streptococcus pyogenes MGAS5005] gi|94548273|gb|ABF38319.1| Radical SAM family enzyme [Streptococcus pyogenes MGAS10750] gi|209540897|gb|ACI61473.1| hypothetical protein Spy49_1185c [Streptococcus pyogenes NZ131] Length = 359 Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 127/373 (34%), Positives = 208/373 (55%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+EL ++ G + R +QIW W+Y + ++ F+ M++IS++ +LN Sbjct: 2 KPSIYSLTRDELIAWAVERG----QKQFRATQIWDWLYKKRVQSFEEMTNISKDFVSILN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DSFCVNPLKQRVVQESADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L + EI Q++L + D G ++S++V+M Sbjct: 113 IGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDD------------RKQGERVSHVVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+ NV L + +D GL+ R IT+STSG I E + V LA+SLH Sbjct: 161 GIGEPFDNYKNVMCFLRVINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +NDLR+ ++ +NR +PLE L A +Y +N R+TFEY+ML +NDS + A L Sbjct: 221 APNNDLRSSIMRVNRSFPLEKLFSAIEYYIEKTNR-RVTFEYIMLNEVNDSIKQAQELAD 279 Query: 305 ILK--GIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 + K + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA Sbjct: 280 LTKTIRKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDVLKKNGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSKTMKKDR 352 >gi|285808444|gb|ADC35970.1| conserved hypothetical protein [uncultured bacterium 98] Length = 358 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 153/361 (42%), Positives = 211/361 (58%), Gaps = 26/361 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + L + ELE AL G R QI++W+Y RG+ D Q M+D+S+ +R +L+ Sbjct: 4 RPDLAELEPGELEAALDARGFE----RFHARQIYRWVYKRGVTDLQRMTDLSRALRGVLD 59 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F+ P +V +++S DGTRK+LL + IE V+IP+ T C+S+QVGC+ Sbjct: 60 TDFTASSPRVVTDELSVDGTRKFLL-----ALADGKRIEAVFIPDTPAMTFCISTQVGCA 114 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG LVRNLTA EI QV + + G + + NIV+M Sbjct: 115 MACGFCLTGKMGLVRNLTAGEIAGQVRVLAAATG---------------LADQAFNIVLM 159 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 GMGEPL N+DN K+L + GLS S RR+TLST G VP + R+ E + LA+SLH Sbjct: 160 GMGEPLHNYDNTMKALRMLHSEHGLSISPRRVTLSTVGIVPGLERLAREPLMPNLAVSLH 219 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +++ R+ LVP NRKYPL +I AC+ +P L RITFEYV+L G+NDSP DA L++ Sbjct: 220 ATTDEQRSALVPPNRKYPLADIIAACQRFP-LKQRSRITFEYVLLDGVNDSPEDARRLVR 278 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L GI AK+NLIP NP PG + + F++ + + +R RG DI AACGQ Sbjct: 279 LLAGIRAKVNLIPLNPAPGIPFERPSDARVDRFAQILADRHLTVSVRKSRGQDIRAACGQ 338 Query: 365 L 365 L Sbjct: 339 L 339 >gi|291522861|emb|CBK81154.1| 23S rRNA m(2)A-2503 methyltransferase [Coprococcus catus GD/7] Length = 352 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 125/366 (34%), Positives = 203/366 (55%), Gaps = 28/366 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K + M ELE ++ + R QI++W++VR F M+++S+++R L Sbjct: 3 DKTDIKSMTLPELEVFTTEV---LGEKKFRAKQIYEWMHVRLADSFDEMTNLSKDLRQKL 59 Query: 65 NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 ++ + + E+V++ +S DGT K+L + I IE+V + K ++C+SSQVG Sbjct: 60 SEQCVLTHLEMVEKYVSAIDGTAKYLFKLSDDRI-----IESVLMHYKHGNSVCISSQVG 114 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC + L R + A E+L ++ + G+ ++SN+V Sbjct: 115 CRMGCRFCASTLGGLERQMLASEMLDEIYQIQKDSGE-----------------RVSNVV 157 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242 +MG GEPL N+D + + + I + + GL S+R +T+ST G VP I + + ++ + LAIS Sbjct: 158 VMGTGEPLDNYDALVRMIDILTHAPGLDISQRNVTVSTCGLVPKIYELADLKLQITLAIS 217 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHAV+++ R L+PI Y +E ++ ACR+Y +N RITFEY ++KG+NDS DA L Sbjct: 218 LHAVNDEKRRELMPIANTYSIEEILKACRYYYSQTNR-RITFEYSLVKGVNDSREDAKAL 276 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +L+GI INLIP NP Y ++ ++ F +++ G + IR G DI AAC Sbjct: 277 AALLEGINCHINLIPVNPIEERSYRQTEADAVLKFKNMLEKYGRNVTIRREMGRDIQAAC 336 Query: 363 GQLKSL 368 GQL+ Sbjct: 337 GQLRKK 342 >gi|195977717|ref|YP_002122961.1| 23S rRNA methyltransferase and florfenicol/chloramphenicol resistance protein [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|254807213|sp|B4U1T1|RLMN_STREM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|195974422|gb|ACG61948.1| 23S rRNA methyltransferase and florfenicol/chloramphenicol resistance protein [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 360 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 126/373 (33%), Positives = 201/373 (53%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ G+ R+EL + G R +QIW W+Y + I+ F M++IS+E +L Sbjct: 2 KPSIYGLTRDELIAWAIDNG----QKAFRATQIWDWLYRKRIQSFDEMTNISKEFLAILK 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F I + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DSFCINPLKQRVAQESADGTVKYLFELPDGML-----IETVLMRQHYGQSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L + EI Q+++ ++ ++S++V+M Sbjct: 113 IGCTFCASGLIKKQRDLNSGEITAQIMMVQNYFDQ------------RGQDERVSHVVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+ NV L +D GL+ R IT+STSG I E + V LA+SLH Sbjct: 161 GIGEPFDNYQNVMTFLRTINDDHGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ INR +PL+ L A +Y +N R+TFEY+ML +ND A L Sbjct: 221 APNNELRSSIMRINRSFPLDKLFSAIEYYIETTNR-RVTFEYIMLNKVNDGVEQAQELAD 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 + K I + +NLIP+NP + Y S ++ + F + +K++G + +R G DI AA Sbjct: 280 LTKRIRKLSYVNLIPYNPVSEHDQYSRSPKERVAAFYDILKKNGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKKDR 352 >gi|291536614|emb|CBL09726.1| 23S rRNA m(2)A-2503 methyltransferase [Roseburia intestinalis M50/1] Length = 349 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 116/366 (31%), Positives = 195/366 (53%), Gaps = 29/366 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K + M EEL+ + IG R Q+++W++ + F M+++S+ ++ L Sbjct: 4 EKTDIKSMNLEELKSYMESIG----EKPFRAKQLYQWMHEKQAASFDEMTNLSKSLQEKL 59 Query: 65 NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + + + +IS DGTRK+L + IE+V + K ++C+SSQVG Sbjct: 60 KKECHFVSLKQEAVQISKIDGTRKYLFALDDGNV-----IESVLMRYKHGNSVCISSQVG 114 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC + LVR LT E+L Q+ G+ +++N+V Sbjct: 115 CRMGCRFCASTLDGLVRGLTPSEMLDQIYRITRDTGE-----------------RVANVV 157 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG GEP+ NFDN+ K + + +D GL+ S+R +T+ST G VP + + ++ + + LA+S Sbjct: 158 VMGTGEPMDNFDNLLKFIELLTDENGLNISQRNVTVSTCGIVPKMRELADKKLQITLALS 217 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA S + R L+P+ KY + +I+ACR+Y + R+TFEY ++ G+ND+ D L Sbjct: 218 LHASSQEKRLELMPVANKYEIHEVIEACRYYFEQTGR-RVTFEYSLVGGVNDTDEDVRRL 276 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++ G+ +NLIP NP Y+ D + I+ F ++++ + IR G DI AC Sbjct: 277 ADLIHGMNCHVNLIPVNPIKERSYVQPDHEAILNFKNRLEKNAINVTIRREMGRDIDGAC 336 Query: 363 GQLKSL 368 GQL+ Sbjct: 337 GQLRKR 342 >gi|50914628|ref|YP_060600.1| ribosomal RNA large subunit methyltransferase N [Streptococcus pyogenes MGAS10394] gi|139473446|ref|YP_001128162.1| ribosomal RNA large subunit methyltransferase N [Streptococcus pyogenes str. Manfredo] gi|81371810|sp|Q5XAZ6|RLMN_STRP6 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829905|sp|A2RDK1|RLMN_STRPG RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|50903702|gb|AAT87417.1| Florfenicol resistance protein [Streptococcus pyogenes MGAS10394] gi|134271693|emb|CAM29926.1| radical SAM superfamily protein [Streptococcus pyogenes str. Manfredo] Length = 359 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 127/373 (34%), Positives = 208/373 (55%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+EL ++ G + R +QIW W+Y + ++ F+ M++IS++ +LN Sbjct: 2 KPSIYSLTRDELIAWAVERG----QKQFRATQIWDWLYKKRVQSFEEMTNISKDFVSILN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DSFCVNPLKQRVVQESADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L + EI Q++L + D G ++S++V+M Sbjct: 113 IGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDD------------RKQGERVSHVVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+ NV L + +D GL+ R IT+STSG I E + V LA+SLH Sbjct: 161 GIGEPFDNYKNVMCFLRVINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +NDLR+ ++ +NR +PLE L A +Y +N R+TFEY+ML +NDS + A L Sbjct: 221 APNNDLRSRIMRVNRSFPLEKLFSAIEYYIEKTNR-RVTFEYIMLNEVNDSIKQAQELAD 279 Query: 305 ILK--GIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 + K + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA Sbjct: 280 LTKTIRKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDVLKKNGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSKTMKKDR 352 >gi|117926273|ref|YP_866890.1| radical SAM protein [Magnetococcus sp. MC-1] gi|205829786|sp|A0LBZ1|RLMN_MAGSM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|117610029|gb|ABK45484.1| 23S rRNA m(2)A-2503 methyltransferase [Magnetococcus sp. MC-1] Length = 356 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 163/369 (44%), Positives = 222/369 (60%), Gaps = 23/369 (6%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 L G+ RE L +++ R Q+W W++V+ + MSD+S + R L+ Sbjct: 7 DLTGLTREALTSLVVEQ---LGEKPFRARQLWSWLHVKLAQHLDEMSDLSIDFRRKLSAL 63 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 + + PE+ +IS DGT KWLLR +IETVYIPE RGTLC+SSQVGC+L+ Sbjct: 64 STPLRPEVSTHQISRDGTEKWLLRLSD-----GQQIETVYIPEDERGTLCISSQVGCTLS 118 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC+TG Q RNLT EI+ QVL AR + + ++++NIV+MGM Sbjct: 119 CPFCHTGAQGFARNLTPSEIVQQVLFARR--------------TLAARDKRVTNIVLMGM 164 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL N++ V+ ++ I D GL+F R++TLST+G +P + + G E+GV LAISLHAV Sbjct: 165 GEPLYNYEAVRDAVLILLDDSGLAFGTRKVTLSTAGLLPKMEQAGRELGVNLAISLHAVR 224 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 + LR+ LVP+N+KY L+ L A YP S R+T+EYVML G+NDS DA + LK Sbjct: 225 DTLRDELVPLNKKYNLQALRAATLRYPLKSGR-RVTWEYVMLHGVNDSEDDARLFVSFLK 283 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 IP+KINLIPFNPWPG Y S I F + + ++G+ + IR RG DI AACGQLK Sbjct: 284 DIPSKINLIPFNPWPGVPYQSSSMTRIAAFQKILYQAGFVTVIRDRRGEDIDAACGQLKG 343 Query: 368 LSKRIPKVP 376 + P Sbjct: 344 AVQGARPRP 352 >gi|303326495|ref|ZP_07356938.1| radical SAM enzyme, Cfr family [Desulfovibrio sp. 3_1_syn3] gi|302864411|gb|EFL87342.1| radical SAM enzyme, Cfr family [Desulfovibrio sp. 3_1_syn3] Length = 353 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 141/369 (38%), Positives = 208/369 (56%), Gaps = 27/369 (7%) Query: 7 ESLIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 +L+ EL + + ++G P + R Q+W+WI+ + RDF MS++S+ R L Sbjct: 2 INLLNYTLPELTDWMQTELGEP----KFRAVQVWQWIWQKMARDFDAMSNVSKACRARLA 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVSS 120 + I +PE+ + S DGT K+LLR + +ETV IP S R T C+SS Sbjct: 58 ETARIDWPEVARVQESSDGTTKFLLRLEDGAL-----VETVLIPSDSREGVRRWTQCLSS 112 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC++ C+FC TG RN+T EIL Q+L+AR LGD + + Sbjct: 113 QVGCAMGCTFCATGDMGFERNMTMGEILGQILVAREHLGDNRPDWPV-----------LR 161 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+V MGMGEPL N V ++L ++ GL+FS RRIT+ST G +A +G LA Sbjct: 162 NLVFMGMGEPLLNLREVMRALQSLNNDKGLNFSPRRITVSTCGIEKGLAELGASGLAYLA 221 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA + +LR ++P ++PL+ L+ A + YP L RITFEY++L GIND P A Sbjct: 222 VSLHAPTQELRARIMPKAARWPLDQLLAALKSYP-LKTRERITFEYLLLGGINDGPGQAG 280 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L +++ I K+NLI +NP G Y D+ ++ F +C+ + ++ +R +G DI A Sbjct: 281 ELARLVADIKGKLNLIVYNPAEGAPYAAPDEARVLAFEQCLWKRHITAIVRKSKGQDIKA 340 Query: 361 ACGQLKSLS 369 ACGQLK+ S Sbjct: 341 ACGQLKAAS 349 >gi|210622414|ref|ZP_03293146.1| hypothetical protein CLOHIR_01094 [Clostridium hiranonis DSM 13275] gi|210154230|gb|EEA85236.1| hypothetical protein CLOHIR_01094 [Clostridium hiranonis DSM 13275] Length = 342 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 131/368 (35%), Positives = 200/368 (54%), Gaps = 30/368 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K++L E++E + +IG R +Q++ WIY +G + F M +I + +R L Sbjct: 3 NKKALKNFTEAEMKEFMKEIG----EKAFRGTQVYSWIY-KGAKTFDDMKNIPKSLREKL 57 Query: 65 NQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + I +I + S DG T+K+L I IETV + SR T+CVS+QVG Sbjct: 58 EEVSYIGNIDIELKLESKDGKTKKYLFLLNDGNI-----IETVMMDYDSRVTVCVSNQVG 112 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC + LVRNL EIL Q++ + G+++SN+V Sbjct: 113 CRMGCRFCASTMDGLVRNLEPWEILDQIMKIQE-----------------DTGKRVSNLV 155 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242 +MG GEPL N+DN K+ L I +D GL+ R ITLST G VP I + + EI + LAIS Sbjct: 156 LMGSGEPLDNYDNTKQFLKIVNDENGLNIGYRHITLSTCGIVPKIYELADLEIPINLAIS 215 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LH+ ++ R ++P+ KY ++ ++DACR+Y +N R+TFEY ++KG+ND ++A L Sbjct: 216 LHSPYDEKRKEIMPVANKYSIKEILDACRYYIKKTNR-RVTFEYSLIKGVNDGKKEAEAL 274 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LKG+ +NLIP N ++ D+ I F + ++ + +R G DI AC Sbjct: 275 ASLLKGMLCHVNLIPINEVDERDFKKPDKAFIYKFRDYLEERNIPATVRISMGSDISGAC 334 Query: 363 GQLKSLSK 370 GQL+ K Sbjct: 335 GQLRRKHK 342 >gi|253580148|ref|ZP_04857415.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848667|gb|EES76630.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 346 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 114/362 (31%), Positives = 197/362 (54%), Gaps = 30/362 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + M +EL++ + +G R QI+ W++ + + M+++S+ +R L + Sbjct: 2 TDIKSMTIDELKKLMTTLG----DKPFRAKQIYSWLHEHLVTSYDEMTNLSKSLREKLKE 57 Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + ++V + S DGT+K+L R + IE+V + K ++C+SSQVGC Sbjct: 58 -YPVTALKMVKVQTSRIDGTQKYLFRLSDGNV-----IESVLMRYKHGNSVCISSQVGCR 111 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC + L R L E+L Q+ ++L G+ ++SN+V+M Sbjct: 112 MGCRFCASTIGGLTRCLLPSEMLDQIYRIQALTGE-----------------RVSNVVVM 154 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G GEPL N++N+ + + I ++ GL S+R +T+ST G VP I + +E + + LA+SLH Sbjct: 155 GTGEPLDNYENLLRFIHILTEDGGLHISQRNLTVSTCGLVPKIYDLAKEKLQMTLALSLH 214 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++ R L+PI KY ++ +++ACR+Y + RITFEY ++ G+NDS DA L Sbjct: 215 APNDVKRRELMPIANKYSMDEVLEACRYYFKETGR-RITFEYSLVAGVNDSDEDARELSG 273 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 ++ + +NLIP NP ++ S ++ + F +++ G + IR G DI ACGQ Sbjct: 274 RIRDMNCHVNLIPVNPIKERSFVRSTRQAVENFKIKLEKCGINVTIRREMGSDIDGACGQ 333 Query: 365 LK 366 L+ Sbjct: 334 LR 335 >gi|167757025|ref|ZP_02429152.1| hypothetical protein CLORAM_02574 [Clostridium ramosum DSM 1402] gi|237735905|ref|ZP_04566386.1| ribosomal RNA large subunit methyltransferase N [Mollicutes bacterium D7] gi|167703200|gb|EDS17779.1| hypothetical protein CLORAM_02574 [Clostridium ramosum DSM 1402] gi|229381650|gb|EEO31741.1| ribosomal RNA large subunit methyltransferase N [Coprobacillus sp. D7] Length = 342 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 122/363 (33%), Positives = 200/363 (55%), Gaps = 28/363 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +++ E+L E I + R Q++ W+Y + R F MSD+S+++R+ L Sbjct: 2 KNIYDYSLEQLTEYFASI----KQKPFRAKQVFSWLYQKDARSFDDMSDLSKDLRNQLKV 57 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 FS+ +I ++++S DGT K+L + IE+V + +LCV+SQ+GC++ Sbjct: 58 EFSLDVLKIKEKQVSRDGTIKYLFELLDGSL-----IESVLMIHDYGKSLCVTSQIGCNM 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC +G + R+LT EI+ Q++ + + +++S++V+MG Sbjct: 113 KCTFCASGLLRKQRDLTPGEIVAQIIKVQQ-----------------DIDQRVSHVVVMG 155 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 GEP N+DNV + + I + GL+ R IT+ST G + I R EE I LAISLHA Sbjct: 156 TGEPFDNYDNVMEFVRIINHPHGLAIGARHITISTCGLIKGIKRYSEEGIQTNLAISLHA 215 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++R+ L+PIN+ +P++ L +A Y +N R+TFEY+MLKG+ND A L Sbjct: 216 ANDEIRDELMPINKVHPMDDLREAISEYIDKTNR-RVTFEYIMLKGVNDDIVYARQLAHY 274 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G+ A +NLIP+N Y SD++ + F + R + +R G DI ACGQL Sbjct: 275 LRGLNAYVNLIPYNSVDEHGYQPSDKETVEIFKNELLRLHINVTLRKEHGRDIDGACGQL 334 Query: 366 KSL 368 ++ Sbjct: 335 RAK 337 >gi|150016033|ref|YP_001308287.1| radical SAM protein [Clostridium beijerinckii NCIMB 8052] gi|205829735|sp|A6LSK1|RLMN_CLOB8 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|149902498|gb|ABR33331.1| radical SAM enzyme, Cfr family [Clostridium beijerinckii NCIMB 8052] Length = 353 Score = 415 bits (1066), Expect = e-114, Method: Composition-based stats. Identities = 137/361 (37%), Positives = 203/361 (56%), Gaps = 30/361 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L+ EEL+ + + G R QI WIY +G+++F M +I + + L ++ Sbjct: 3 NLLDFTLEELKAWMKENGESA----FRGQQILSWIY-KGVKEFDNMKNIPKPLVQKLKEN 57 Query: 68 FSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 F + P+I++ S DGT K+LL F + IE+V + K ++C+S+QVGC++ Sbjct: 58 FFVGLPKIIEVYKSNIDGTEKFLLGFKDGNL-----IESVLMRYKHGNSICISTQVGCAM 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC + + VRNLT EIL Q+++ + + + +ISN+V+MG Sbjct: 113 GCKFCASTIEGKVRNLTTGEILSQIMVVQDYINE-----------------RISNVVLMG 155 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245 GEPL N++NV K L I S L+ +R ITLST G VP I + + E+ + LA+SLHA Sbjct: 156 SGEPLDNYNNVIKFLEIVSAEYALNIGQRHITLSTCGIVPKIYELADKELSITLALSLHA 215 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 SND R ++PI +Y +E +++ACR+Y +N RITFEY ++K +ND DA L K+ Sbjct: 216 FSNDKRKEIMPIANRYSIEEILEACRYYINKTNR-RITFEYALVKDVNDGREDAKALGKL 274 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG+ +NLIP N Y S +K I FSE +K G R G DI AACGQL Sbjct: 275 LKGMLCHVNLIPVNEIKENTYKRSSKKAIEDFSEILKNHGIEVTTRREMGSDINAACGQL 334 Query: 366 K 366 + Sbjct: 335 R 335 >gi|320353873|ref|YP_004195212.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfobulbus propionicus DSM 2032] gi|320122375|gb|ADW17921.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfobulbus propionicus DSM 2032] Length = 371 Score = 415 bits (1066), Expect = e-114, Method: Composition-based stats. Identities = 157/388 (40%), Positives = 221/388 (56%), Gaps = 27/388 (6%) Query: 1 MN-FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59 MN KK L + +E+L + +G P R QI WIY GI DF M+D+++E Sbjct: 1 MNVAAKKTDLKNLTQEQLVRFVESLGQPA----FRGRQILAWIYRPGIIDFTQMTDLAKE 56 Query: 60 VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119 R +L Q + + + S DG K+ R I IE+V IPE+ R TLCVS Sbjct: 57 FRAILTQSAFMSRFDDCMVECSRDGAVKFAFRLDDGQI-----IESVLIPEEDRNTLCVS 111 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 SQVGC++ CSFC TG RNLT EI+ QV R + + Sbjct: 112 SQVGCAMGCSFCLTGAMGFCRNLTTAEIVNQVCAVRDW-------------TLAHDKGLL 158 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 +NIV MGMGEPL NFDN+ +++I ++ GL FS RRIT+ST G VP + R+GEE V L Sbjct: 159 TNIVFMGMGEPLANFDNLLDAIAILTEQRGLDFSNRRITVSTCGLVPQMRRLGEETDVNL 218 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHAV++++R+ L+P+N++YP+ LI+ CR Y +RI FEY +L+GINDS DA Sbjct: 219 AVSLHAVNDEVRSRLMPVNKRYPIAELIEVCRTYRQKR-RKRIMFEYTLLQGINDSDADA 277 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 + L ++L+ +P KINL+ NP G Y ++ ++ F ++ GY+ IRT RG DI Sbjct: 278 VQLAELLREVPCKINLLAVNPGSGSAYQSPGEERVLCFQRILRDRGYTVFIRTSRGEDIS 337 Query: 360 AACGQLKSL---SKRIPKVPRQEMQITG 384 AACGQL ++ + + +Q TG Sbjct: 338 AACGQLAGKGWNEEQAISLDKTTLQSTG 365 >gi|295135350|ref|YP_003586026.1| radical SAM superfamily protein, UPF0063 [Zunongwangia profunda SM-A87] gi|294983365|gb|ADF53830.1| radical SAM superfamily protein, UPF0063 [Zunongwangia profunda SM-A87] Length = 348 Score = 415 bits (1066), Expect = e-114, Method: Composition-based stats. Identities = 127/366 (34%), Positives = 210/366 (57%), Gaps = 24/366 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK+ + + +++L+E ++ G R SQ+++W++ +G DF M++IS++ R +L Sbjct: 4 KKKDIRALTKKQLQEFFVEHG----DKSFRGSQVYEWLWSKGAHDFDEMTNISKQTRAML 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 ++F I + + + S DGT K ++ +E+V IP +R T CVSSQVGC Sbjct: 60 AENFVINHIRVDQMQRSSDGTIKNAVKLHDNLT-----VESVLIPTPTRTTACVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 SL C FC T K +RNL +EI QV+ I+ R +SNIV Sbjct: 115 SLDCQFCATARLKRMRNLNPDEIYDQVVA-------------IDNESRLYFDRPLSNIVF 161 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243 MGMGEPL N++NV K++ + GL S +RIT+STSG I ++ + E + LA+SL Sbjct: 162 MGMGEPLMNYNNVMKAVEKITSDEGLGMSAKRITISTSGVPKMIKKLADDEAKIKLAVSL 221 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA ++++R ++P N +PLE L +A ++ + RIT+EY++ K +ND+ +DA+ L+ Sbjct: 222 HAATDEVRTRIMPFNETFPLEDLREALEYWYSKT-KSRITYEYIVWKDVNDTRKDAMALV 280 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 + K +P K+NLI +NP ++ + + + + ++++G + +R RG DI AACG Sbjct: 281 RFCKFVPCKVNLIEYNPIDDGDFQQASSQATAMYQQLLEQNGITVTVRRSRGKDIDAACG 340 Query: 364 QLKSLS 369 QL + S Sbjct: 341 QLANKS 346 >gi|238924694|ref|YP_002938210.1| radical SAM enzyme, Cfr family [Eubacterium rectale ATCC 33656] gi|238876369|gb|ACR76076.1| radical SAM enzyme, Cfr family [Eubacterium rectale ATCC 33656] Length = 354 Score = 414 bits (1065), Expect = e-114, Method: Composition-based stats. Identities = 119/378 (31%), Positives = 208/378 (55%), Gaps = 31/378 (8%) Query: 1 MNFLKKE--SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQ 58 M +K++ + M +EL E ++ +G + R QI++WI+V+ + F M++IS+ Sbjct: 1 MEQIKEQLTDIKSMNMDELTEFIISLG----EKKFRAKQIYEWIHVKHVDSFDEMTNISK 56 Query: 59 EVRHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLC 117 + +L + +I + + ++S DGTRK+L + IE+V + K ++C Sbjct: 57 KFIQVLKDNAILISLKKEEVQVSKLDGTRKYLFALDDGNV-----IESVLMKYKHGNSVC 111 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 +SSQVGC + C FC + LVR L E++ Q+ +G+ Sbjct: 112 ISSQVGCRMGCRFCASTLDGLVRGLRPSEMIDQIYQIGKDIGE----------------- 154 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IG 236 +ISN+V+MG GEPL N+DN+ + + + +D G++ S+R +T+ST G VP + ++ +E + Sbjct: 155 RISNVVVMGTGEPLDNYDNLLRFIELLTDENGINISQRNLTVSTCGLVPRMRQLADEKLA 214 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 + LA+SLHA + + R L+P+ Y + ++DAC++Y + R+TFEY ++ G+ND+ Sbjct: 215 ITLALSLHASNQEKRKALMPVANSYDIHDVVDACKYYFAQTGR-RVTFEYSLVGGVNDTA 273 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 DA L ++ G+ INLIP NP +Y+ S++ I F ++++G + IR G Sbjct: 274 EDAAELSALVHGMNCHINLIPVNPIKERDYVQSNKGVIEAFKNRLEKNGINVTIRREMGR 333 Query: 357 DILAACGQLKSLSKRIPK 374 DI ACGQL+ + Sbjct: 334 DIDGACGQLRKKHIDKER 351 >gi|66806177|ref|XP_636811.1| hypothetical protein DDB_G0288255 [Dictyostelium discoideum AX4] gi|60465214|gb|EAL63309.1| hypothetical protein DDB_G0288255 [Dictyostelium discoideum AX4] Length = 407 Score = 414 bits (1065), Expect = e-114, Method: Composition-based stats. Identities = 168/381 (44%), Positives = 241/381 (63%), Gaps = 21/381 (5%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 + +KK +LIG+ ++ELE+ +LK+G P + + QIW ++Y +GI D +S+E R Sbjct: 44 DIIKKINLIGIQKDELEDKVLKLGYP----KYLSEQIWAFMYNKGIVDINSFERVSKEKR 99 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 + + + EI ++S DGTRK L+ F E+E+V+IPE RGTLCVSSQ Sbjct: 100 EEIKSKYEVNIGEITKHQLSVDGTRKLLISF------DGAEVESVFIPEGKRGTLCVSSQ 153 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC+ C+FC+TGTQK +RNLTA EI+ QV+ R +L DF S+ R ++N Sbjct: 154 VGCTFACTFCHTGTQKFIRNLTASEIVSQVIATRHVLNDFTDS---------SIKRTLTN 204 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLA 240 IV MG GEP N+ NV K++ I +D GL+ K +IT+STSG VP I R+G + + LA Sbjct: 205 IVFMGQGEPFYNYRNVSKAIKIITDPNGLAIGKSKITVSTSGVVPLIDRLGSDFPGIGLA 264 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ISLH+ ++ R+ +VP NR++P+ L++AC + + RIT EYVMLKG+NDS +DA Sbjct: 265 ISLHSANDKTRSEIVPANRQWPISELVEACIKF-SKNCKERITIEYVMLKGVNDSEQDAY 323 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 +L+K+ K P+ +NLIPFNPWPG +Y S ++ I FS+ + G IR PRG DILA Sbjct: 324 DLVKLSKSFPSFVNLIPFNPWPGSQYKSSSKETISQFSKILDDKGIKVTIRQPRGRDILA 383 Query: 361 ACGQLKSLSKRIPKVPRQEMQ 381 ACGQL + S + P Q ++ Sbjct: 384 ACGQLNTESIKEINKPIQPLE 404 >gi|309790982|ref|ZP_07685522.1| radical SAM protein [Oscillochloris trichoides DG6] gi|308226955|gb|EFO80643.1| radical SAM protein [Oscillochloris trichoides DG6] Length = 375 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 135/381 (35%), Positives = 196/381 (51%), Gaps = 28/381 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + SL M +LE L G P R QI++ +YV D M+D+ Q +R Sbjct: 1 MDNPSLYAMTLPDLEALLRAWGQPA----FRARQIYRQLYVNLAADPAAMTDLPQALRER 56 Query: 64 LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L ++ +V + S DG TRK L P V+IETV + R T+CVS+Q Sbjct: 57 LAHEATLNPLRLVRSQSSADGLTRKALFALPD-----GVQIETVLMIYADRATVCVSTQA 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG------ 176 GC++ CSFC T T L RNLTA E++ QVL A + G G Sbjct: 112 GCAMGCSFCATATLGLRRNLTAGEMVAQVLWASREVRSLAVPATQPGHAHSEEGATWWGE 171 Query: 177 --------RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228 ++SN+V MGMGEP N+D ++ + G + R +T+ST G VP I Sbjct: 172 ARALRRPLERVSNLVFMGMGEPFANYDRWWDAVQCLHNPQGFNMGARSMTVSTVGLVPGI 231 Query: 229 ARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 R+ + + + LAISLHA + LRN LVP+N +YP+ ++ A + Y + R++FEYV Sbjct: 232 LRLADAGLPINLAISLHAPDDALRNELVPVNTRYPIREVLAAAQTYIEKTGR-RVSFEYV 290 Query: 288 MLKGINDSPRDALNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSG 345 +++G ND P AL L K+L+ + +NLIP+NP PG SD + + F + + G Sbjct: 291 LIQGRNDHPHQALALAKLLRSQSLICHVNLIPWNPLPGSPLARSDLQRVHAFQQVLVDYG 350 Query: 346 YSSPIRTPRGLDILAACGQLK 366 + +R RG++I AACGQL Sbjct: 351 LACTVRVERGVEIAAACGQLA 371 >gi|149010606|ref|ZP_01831977.1| hypothetical protein CGSSp19BS75_04607 [Streptococcus pneumoniae SP19-BS75] gi|147765087|gb|EDK72016.1| hypothetical protein CGSSp19BS75_04607 [Streptococcus pneumoniae SP19-BS75] Length = 361 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 124/373 (33%), Positives = 210/373 (56%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLPHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + +IS+IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERISHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N++NV + +D G++ R IT+STSG I +E + V LA+SLH Sbjct: 161 GIGEPFDNYNNVLNFVCTINDDKGMAIGARHITISTSGLAHKIRDFADEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L + Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKRDR 352 >gi|239626555|ref|ZP_04669586.1| radical SAM enzyme [Clostridiales bacterium 1_7_47_FAA] gi|239516701|gb|EEQ56567.1| radical SAM enzyme [Clostridiales bacterium 1_7_47FAA] Length = 354 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 127/363 (34%), Positives = 206/363 (56%), Gaps = 29/363 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 ++ + M EE+ E + +G R QI+ WI+V+ F GMS +S+E+R L Sbjct: 10 RKDIKSMTLEEVTEEMAALG----EKPFRAKQIYDWIHVKLAGSFDGMSSLSKELRQKLK 65 Query: 66 QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 ++S+ I +E+IS DGTRK+L C+ IE+V++ ++C+SSQVGC Sbjct: 66 DNYSLTCLSITEERISQVDGTRKYLF-----CLEDGNIIESVWMQYHHGNSVCISSQVGC 120 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC + L RNL E+L Q+ ++ G ++SN+V+ Sbjct: 121 RMGCRFCASTLDGLERNLRPSEMLDQIYRIQAHTGQ-----------------RVSNVVV 163 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG GEP N+DNV + L + S GL+ S+R +T+ST G VP I + +E + V LA+SL Sbjct: 164 MGSGEPFDNYDNVIRFLRLISHEKGLNISQRNLTVSTCGIVPGILQFAQEGLAVTLALSL 223 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA ++++R L+PI +Y L+ +++AC +Y + R+TFEY +++G+ND+ +A L Sbjct: 224 HAPNDEVRKTLMPIANRYKLKDVLEACHYYYEKTGR-RLTFEYSLVQGVNDNLDEARALS 282 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +++K +NLIP NP +Y+ S +K I F + ++++G + IR G DI ACG Sbjct: 283 RLIKDQHGHVNLIPVNPIKERDYVQSGRKAIADFKDLLEKNGINVTIRREMGRDIGGACG 342 Query: 364 QLK 366 QL+ Sbjct: 343 QLR 345 >gi|222056625|ref|YP_002538987.1| radical SAM enzyme, Cfr family [Geobacter sp. FRC-32] gi|221565914|gb|ACM21886.1| radical SAM enzyme, Cfr family [Geobacter sp. FRC-32] Length = 345 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 140/370 (37%), Positives = 207/370 (55%), Gaps = 29/370 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K + +LE + G R R QI+KW+Y + F M+++S++ R Sbjct: 1 MEKVDIKNFTLSQLEAHITGQG----KERFRAKQIFKWLYQQNATSFAQMTNLSKDFRAE 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L + I E + S DGT+K+L R +E+V IP++ R TLC+SSQVG Sbjct: 57 LEKTARISNLEAEAVESSADGTKKYLFRLSD-----GNAVESVLIPDEDRNTLCISSQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C FC TGT +L RNLT EI+ QV + + NIV Sbjct: 112 CAMGCEFCLTGTFRLTRNLTTAEIVNQVCAVKK-------------------NEPVRNIV 152 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MGMGEPL N +NV +L I +D G FS R++TLST+G VP +A +G + V LAIS+ Sbjct: 153 FMGMGEPLANLENVIGALRILTDPDGFQFSTRKVTLSTAGLVPEMAELGAAVMVNLAISM 212 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 +A ++++R+ ++P+NR+YPL+ L+ AC+ +P S IT EYVM+KG+NDS DA L+ Sbjct: 213 NATTDEVRDRIMPVNRRYPLKELLAACKAFPLPSRRW-ITVEYVMIKGVNDSLDDAKRLV 271 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +++ P+K+NLIPFN GC+ Q I F + + + R+ RG DI AACG Sbjct: 272 RLISTFPSKVNLIPFNEHEGCDLRTPTQDSIDRFHKFLLDKHVTVITRSSRGSDISAACG 331 Query: 364 QLKSLSKRIP 373 QLK ++ Sbjct: 332 QLKGRLDKVT 341 >gi|269837848|ref|YP_003320076.1| radical SAM enzyme, Cfr family [Sphaerobacter thermophilus DSM 20745] gi|269787111|gb|ACZ39254.1| radical SAM enzyme, Cfr family [Sphaerobacter thermophilus DSM 20745] Length = 347 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 140/364 (38%), Positives = 196/364 (53%), Gaps = 26/364 (7%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L + ELEE L G+P R R QI+ W Y + D+ M+ + + +R L Sbjct: 3 LYDLTLAELEERLAADGVP----RYRARQIFHWAYRQLAVDYDAMTVLPKTLRADLATRL 58 Query: 69 SIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 + V E + DG T K L R IETV + R T+CVS QVGC++ Sbjct: 59 PLTPLTPVREVQTDDGETIKTLFRTVD-----GQHIETVLMFYPDRTTVCVSCQVGCAVG 113 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 CSFC TG L RNLTA E+ GR ++NIVMMGM Sbjct: 114 CSFCATGMMGLTRNLTAGEM--------------VAQVVAAARRAREAGRTLTNIVMMGM 159 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAV 246 GEP N++ + + I + G++F RRIT+STSG VP I R+ E V LA+SLHA Sbjct: 160 GEPFQNYEATMRMVRILHEEEGMNFGARRITVSTSGLVPFIDRLAREPFQVKLAVSLHAP 219 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++DLR+ LVP+NR+YP+ LI ACR Y G + R+TFEYV++ G+NDS +A L ++L Sbjct: 220 NDDLRSSLVPLNRRYPIGELIAACRRYVGETGR-RVTFEYVLIDGVNDSDANAEELARLL 278 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +G+ +NLIP NP P + + I F + ++ G + +R RG+DI AACGQL+ Sbjct: 279 RGLLCHVNLIPLNPTPAAPFGRPSVERINRFEQILRARGIPATVRYSRGVDISAACGQLR 338 Query: 367 SLSK 370 + + Sbjct: 339 AEYE 342 >gi|19746482|ref|NP_607618.1| ribosomal RNA large subunit methyltransferase N [Streptococcus pyogenes MGAS8232] gi|81632611|sp|Q8P058|RLMN_STRP8 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|19748687|gb|AAL98117.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232] Length = 359 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 127/373 (34%), Positives = 208/373 (55%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+EL ++ G + R +QIW W+Y + ++ F+ M++IS++ +LN Sbjct: 2 KPSIYSLTRDELIAWAVERG----QKQFRATQIWDWLYKKRVQSFEEMTNISKDFVPILN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DSFCVNPLKQRVVQESADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L + EI Q++L + D G ++S++V+M Sbjct: 113 IGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDD------------RKQGERVSHVVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+ NV L + +D GL+ R IT+STSG I E + V LA+SLH Sbjct: 161 GIGEPFDNYKNVMCFLRVINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +NDLR+ ++ +NR +PLE L A +Y +N R+TFEY+ML +NDS + A L Sbjct: 221 APNNDLRSSIMRVNRSFPLEKLFSAIEYYIEKTNR-RVTFEYIMLNEVNDSIKQAQELAD 279 Query: 305 ILK--GIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 + K + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA Sbjct: 280 LTKTIRKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDVLKKNGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSKTMKKDR 352 >gi|303246742|ref|ZP_07333019.1| radical SAM enzyme, Cfr family [Desulfovibrio fructosovorans JJ] gi|302491759|gb|EFL51639.1| radical SAM enzyme, Cfr family [Desulfovibrio fructosovorans JJ] Length = 350 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 137/364 (37%), Positives = 202/364 (55%), Gaps = 22/364 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +LI + ELE ++ +G P R Q+W+W++ +G RD M+D+S+ +R L + Sbjct: 2 TNLIDLTFHELEALIVSLGEPP----YRARQVWQWLWQKGCRDIGRMTDVSKALRSRLGE 57 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 +I +P+++ S DGT K+LL +E V IPEK T C+S+QVGC++ Sbjct: 58 VATIAWPDVLRVSESADGTVKFLLGLSD-----GEAVECVLIPEKDHYTACLSTQVGCAM 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG RN+T E+L QVL+AR L D + N+V MG Sbjct: 113 GCGFCATGMLGFRRNMTPGEMLGQVLVARQYLLD------------KGEALALRNLVFMG 160 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N+DN+ K+L GL FS RRIT+ST+G N+ +G LA+SLHA Sbjct: 161 MGEPLLNYDNLVKTLEALHHPQGLDFSGRRITVSTAGVRRNLLELGRTGLCSLAVSLHAP 220 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 + + R ++P K PL L+ R YP L R+TFEY++L G+ND+ DA L+++L Sbjct: 221 TQEKRARIMPGAAKLPLSELMGILREYP-LKPRERLTFEYLLLDGVNDADADARELVRLL 279 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + AK+NLI +N PG + + F E +K G ++ IR +G DI AACGQL+ Sbjct: 280 STVKAKVNLIVYNATPGLPFRQPAAGRVAAFQEILKAKGITATIRKSKGADIAAACGQLR 339 Query: 367 SLSK 370 + ++ Sbjct: 340 AEAE 343 >gi|302389594|ref|YP_003825415.1| 23S rRNA m(2)A-2503 methyltransferase [Thermosediminibacter oceani DSM 16646] gi|302200222|gb|ADL07792.1| 23S rRNA m(2)A-2503 methyltransferase [Thermosediminibacter oceani DSM 16646] Length = 346 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 133/365 (36%), Positives = 212/365 (58%), Gaps = 30/365 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K +L GM EEL++ ++ +G P R QI++WIY +G+ DF+ M+D+ + + Sbjct: 1 MAKTNLKGMTVEELQDFIVSLGEPP----YRARQIFRWIY-KGVTDFEKMTDLPRTLVEK 55 Query: 64 LNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L + I I + S D T K+L I IE+V + ++CVSSQV Sbjct: 56 LKELSYIDKIGIYKKFQSRKDATVKYLFLLSDNNI-----IESVKMEHSYGVSVCVSSQV 110 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC++ C+FC + L R+L + E++ Q+L+ + + ++IS++ Sbjct: 111 GCAMGCAFCASTIDGLKRSLNSGEMVDQILVIQE-----------------DIKKRISHV 153 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 V+MG GEPL N+D + K L+I + + + S RRIT+ST G VP I R+ +E + + L++ Sbjct: 154 VIMGSGEPLLNYDELIKFLNIINSPLAFNISYRRITVSTCGIVPEIRRLADEGLPITLSV 213 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA +DLR+ LVP+NR+YP+ L+DAC++Y +N RITFEY ++ +NDS A+ Sbjct: 214 SLHAPEDDLRDKLVPVNRRYPILELLDACKYYIIKTNR-RITFEYALISDVNDSKECAVK 272 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++LKG+ +NLIP NP +++ S ++I F E ++ G S +R G DI AA Sbjct: 273 LARLLKGLLCHVNLIPLNPVRERDFMRSKPENIRLFQEILRHYGISVTVRQEMGADIEAA 332 Query: 362 CGQLK 366 CGQL+ Sbjct: 333 CGQLR 337 >gi|297519092|ref|ZP_06937478.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli OP50] Length = 330 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 142/334 (42%), Positives = 192/334 (57%), Gaps = 22/334 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ +R L Sbjct: 17 KINLLDLNRQQMREFFKDLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSSQVGC+ Sbjct: 73 EVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSSQVGCA 126 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T Q RNL EI+ QV A ++G + R I+N+VMM Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPITNVVMM 176 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLHA Sbjct: 177 GMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHA 236 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLI 303 ++++R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTF 337 ++LK P KINLIP+NP+PG Y S I F Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRF 330 >gi|78223881|ref|YP_385628.1| ribosomal RNA large subunit methyltransferase N [Geobacter metallireducens GS-15] gi|123742801|sp|Q39S71|RLMN_GEOMG RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|78195136|gb|ABB32903.1| 23S rRNA m(2)A-2503 methyltransferase [Geobacter metallireducens GS-15] Length = 346 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 158/371 (42%), Positives = 216/371 (58%), Gaps = 31/371 (8%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN K + + ++L L G R R QI+KW+Y + R F M+D+++++ Sbjct: 2 MNG--KIDIKNLTLDDLIAFLAGKG----KERYRARQIFKWLYQKDARSFAEMTDLAKDL 55 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L + I E ++S DGTRK+L R +E+V IPE+ R TLC+SS Sbjct: 56 RRDLEETAVISDLEPEAMEVSRDGTRKYLFRLED-----GNTVESVLIPEEDRTTLCISS 110 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC++ C FC TGT +L RNLTA EI+ Q+ R + Sbjct: 111 QVGCAMACEFCLTGTFRLTRNLTAGEIVNQICAVRR-------------------DVPVR 151 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 NIV MGMGEPL N DNV K+L I GL FS RR+T+STSG VP + R+G E+ V LA Sbjct: 152 NIVFMGMGEPLANLDNVVKALKIILHDDGLQFSTRRVTVSTSGLVPEMERLGREVTVNLA 211 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SL+A ++++R+ ++P+NR+YPL +L+DACR YP L R+IT EYVM+KG+NDS DA Sbjct: 212 VSLNATTDEVRDRIMPVNRRYPLRLLLDACRSYP-LPGRRKITIEYVMIKGLNDSLEDAK 270 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L+K+L I +KINLIPFN GC + DQ I F + ++ R+ RG DI A Sbjct: 271 RLVKLLSDISSKINLIPFNEHDGCSFKSPDQGAIDVFHSYLLSKHFTVITRSSRGSDISA 330 Query: 361 ACGQLKSLSKR 371 ACGQLK + Sbjct: 331 ACGQLKGKLDK 341 >gi|253701168|ref|YP_003022357.1| ribosomal RNA large subunit methyltransferase N [Geobacter sp. M21] gi|251776018|gb|ACT18599.1| radical SAM enzyme, Cfr family [Geobacter sp. M21] Length = 351 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 140/375 (37%), Positives = 211/375 (56%), Gaps = 29/375 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K + + + LE + +G R R QI+KW+Y F+ M+++S+E R + Sbjct: 1 MQKTDIKNLTLQGLESYISGLG----KERFRAKQIFKWLYQLDAGSFEEMTNVSKEFRSM 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L + I + S DGTRK+L R +E+V IP++ R TLC+SSQVG Sbjct: 57 LGEIAQISNLTPEVVEASEDGTRKYLFRLFD-----GSAVESVLIPDEGRNTLCISSQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC TG+ L RNLT EI+ QV + + +SNIV Sbjct: 112 CAMGCAFCLTGSFGLSRNLTTAEIVNQVCAVKR-------------------DQPVSNIV 152 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MGMGEPL N + V ++ I +D G FS R++T+STSG VP +A +G V LA+SL Sbjct: 153 FMGMGEPLANLNGVIPAVQILTDPDGFQFSTRKVTVSTSGLVPEMAELGRGCTVNLAVSL 212 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 +A ++++R+ ++P+NR+YPL L+ AC+ +P S IT EYVM++ +NDS DA L+ Sbjct: 213 NATTDEVRSRIMPVNRRYPLAELLAACKAFPLPSRRW-ITMEYVMIRDLNDSLEDAKRLV 271 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +++ IP+K+NLIPFN GC++ C Q+ I F + + + R+ RG DI AACG Sbjct: 272 RLISNIPSKVNLIPFNEHEGCDFKCPTQESIDRFHKYLLDKNVTVITRSSRGSDISAACG 331 Query: 364 QLKSLSKRIPKVPRQ 378 QLK + R Sbjct: 332 QLKGRLDQGDGERRD 346 >gi|154505950|ref|ZP_02042688.1| hypothetical protein RUMGNA_03492 [Ruminococcus gnavus ATCC 29149] gi|153793968|gb|EDN76388.1| hypothetical protein RUMGNA_03492 [Ruminococcus gnavus ATCC 29149] Length = 346 Score = 413 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 115/370 (31%), Positives = 198/370 (53%), Gaps = 29/370 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ + E+L + +IG + R QI++W++V+ F+ M+++S+ +R L Sbjct: 2 KKDIRAYTYEQLAAEMEQIG----EKKFRAKQIYEWLHVKLADSFEEMTNLSKALREKLE 57 Query: 66 QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I+ ++++ +IS D T K+L + + +E+V + K ++C+SSQVGC Sbjct: 58 AEYEILPVKMLERQISKIDATNKFLFQLSDGNV-----VESVLMRYKHGNSVCISSQVGC 112 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC + L RNL+ E+L Q+ + + G+ ++SN+V+ Sbjct: 113 RMGCRFCASTIGGLERNLSPSEMLGQIYQIQKITGE-----------------RVSNVVV 155 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISL 243 MG GEP+ N++N + + +D GL S+R +T+ST G VP I + E + + LA+SL Sbjct: 156 MGTGEPMDNYENFLTFVRMLTDEHGLHISQRNLTVSTCGIVPKIRELAMEHLQITLALSL 215 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H + + R L+P+ KY L+ ++ AC Y + R+TFEY ++ G+ND+ DA LI Sbjct: 216 HGSTQEKRKQLMPVANKYDLQEVLKACDFYFQETGR-RVTFEYSLVHGVNDTQEDAEELI 274 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ILK +NLIP NP ++ +K+ + F +++SG + IR G DI ACG Sbjct: 275 GILKSRNCHLNLIPVNPIKERDFQQPSRKNALNFKNKLEKSGINVTIRREMGADIDGACG 334 Query: 364 QLKSLSKRIP 373 QL+ + Sbjct: 335 QLRRRYVKTE 344 >gi|297584286|ref|YP_003700066.1| radical SAM enzyme, Cfr family [Bacillus selenitireducens MLS10] gi|297142743|gb|ADH99500.1| radical SAM enzyme, Cfr family [Bacillus selenitireducens MLS10] Length = 358 Score = 413 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 132/379 (34%), Positives = 212/379 (55%), Gaps = 26/379 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K S+ G+ ELE+ G + R Q+W W+YV+ IRDF M++I ++ L Sbjct: 1 MNKTSIYGLTFNELEDWFEGKG----EKKFRAKQVWDWLYVKRIRDFDDMTNIKKDTISL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + HF + E+ ++ S DGT+K+L + + IETV + ++CV++QVG Sbjct: 57 IKDHFYLESLELHSKQESKDGTKKFLFKLSDGNL-----IETVLMKFDYGNSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ CSFC +G K R+LT+ EI+ Q+L + + D ++S+IV Sbjct: 112 CNIGCSFCASGLLKKDRDLTSAEIVEQILKVQFDMDD------------KQTEERVSHIV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+DN+ L I + GL+ R IT+STSG V I +E + V LA+S Sbjct: 160 VMGIGEPFDNYDNLMSFLRIVNSDRGLAIGARHITVSTSGLVEKIRAFADENLQVNLAVS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +NDLR+ ++ IN+ P+E ++ A +Y +N RIT EY++L G+ND P A L Sbjct: 220 LHAPNNDLRSSIMKINKGQPIEDVMSAIDYYLEKTNR-RITLEYILLDGVNDKPEHAKEL 278 Query: 303 IKILKGIP--AKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++++ INLIP+NP +Y S++ I+TF + + ++G +R +G DI Sbjct: 279 AELVRDKKKLTYINLIPYNPVDEYIQYKQSEKGAILTFYDLLMKNGVQCGVRHEQGSDID 338 Query: 360 AACGQLKSLSKRIPKVPRQ 378 AACGQL+S + + + Sbjct: 339 AACGQLRSKQMKKDREKAK 357 >gi|306827020|ref|ZP_07460318.1| cfr family radical SAM enzyme [Streptococcus pyogenes ATCC 10782] gi|304430766|gb|EFM33777.1| cfr family radical SAM enzyme [Streptococcus pyogenes ATCC 10782] Length = 359 Score = 413 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 126/373 (33%), Positives = 207/373 (55%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+EL ++ G + R +QIW W+Y + ++ F+ M++IS++ +LN Sbjct: 2 KPSIYSLTRDELIAWAVERG----QKQFRATQIWDWLYKKRVQSFEEMTNISKDFVSILN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DSFCVNPLKQRVVQESADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L + EI Q++L + D G ++S++V+M Sbjct: 113 IGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDD------------RKQGERVSHVVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+ NV L + +D GL+ R IT+STSG I E + LA+SLH Sbjct: 161 GIGEPFDNYKNVMCFLRVINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQANLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +NDLR+ ++ +NR +PLE L A +Y +N R+TFEY+ML +NDS + A L Sbjct: 221 APNNDLRSSIMRVNRSFPLEKLFSAIEYYIEKTNR-RVTFEYIMLNEVNDSIKQAQELAD 279 Query: 305 ILK--GIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 + K + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA Sbjct: 280 LTKTIRKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDVLKKNGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSKTMKKDR 352 >gi|51245787|ref|YP_065671.1| hypothetical protein DP1935 [Desulfotalea psychrophila LSv54] gi|81641926|sp|Q6ALW1|RLMN_DESPS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|50876824|emb|CAG36664.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54] Length = 362 Score = 413 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 156/365 (42%), Positives = 218/365 (59%), Gaps = 17/365 (4%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K L + +++L E K+G P R QI W+Y +RDF+ M+D+++ R LL Sbjct: 10 EKIDLKNLSQDQLVEFAEKLGQPA----FRGRQIMSWLYRPEVRDFEQMTDLAKVFRKLL 65 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 ++ + + + + DG K+ R + IETV IPE R TLC+SSQVGC Sbjct: 66 AENSFFSHFDDPIIERAKDGCVKFGFRLHDGHV-----IETVLIPEPDRNTLCISSQVGC 120 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 ++ C+FC TG RNLT EI+ QV AR L + P + I +++N+V Sbjct: 121 AMKCTFCMTGGMGFTRNLTPSEIVNQVCAARDFLANEPADKLI-------GPDRVTNVVY 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV S+SI ++ GL + RRIT+ST G V N+AR+G+E V LAISLH Sbjct: 174 MGMGEPLNNLENVLTSISILTEQKGLDLTGRRITVSTCGIVANMARLGQEAPVNLAISLH 233 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV + R++L+P+N +YPL+ L++ACR YP + RRI FEY+ML GINDS +A L + Sbjct: 234 AVDDKTRDMLMPVNNRYPLDELLEACRTYP-MGKRRRIMFEYIMLAGINDSDTEARTLAR 292 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 L+ IP KINLIP+N PG Y K I++F ++ + YS IR RG DI AACGQ Sbjct: 293 KLQEIPCKINLIPYNESPGLPYKSPGMKRILSFQNILREANYSVFIRNSRGEDIAAACGQ 352 Query: 365 LKSLS 369 L + Sbjct: 353 LATDE 357 >gi|323705502|ref|ZP_08117077.1| radical SAM enzyme, Cfr family [Thermoanaerobacterium xylanolyticum LX-11] gi|323535404|gb|EGB25180.1| radical SAM enzyme, Cfr family [Thermoanaerobacterium xylanolyticum LX-11] Length = 343 Score = 413 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 143/364 (39%), Positives = 204/364 (56%), Gaps = 31/364 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L M +ELE+ L IG + R Q+++WIY RGI +F M+DI +++R L Sbjct: 2 IDLKNMTIDELEKFFLDIG----ETKYRAKQVFRWIY-RGITNFDDMTDIKKDLRQKLKN 56 Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I +I + +S DGT K+L I +E V I T C+S+QVGC+ Sbjct: 57 MAFISNLQIAKKVVSSEDGTAKYLFLLDDENI-----VEGVAIKYSFGNTSCISTQVGCN 111 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + CSFC +G VRNL A E++ +VL+ G KISNIV+M Sbjct: 112 MRCSFCASGIGGKVRNLKASEMVDEVLIMNKDYG------------------KISNIVLM 153 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G GEP N+D V K + I ++ G+ R IT+ST G VP I + +E +GV L+ISLH Sbjct: 154 GSGEPFDNYDEVMKFIKIVNNPFGMGIGVRHITISTCGIVPKIYKFADEGLGVNLSISLH 213 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++DLR+ L+PIN+ YP++ LIDACR+Y ++ RITFEY ++K +NDS +L L Sbjct: 214 APTDDLRSQLMPINKVYPIKDLIDACRYYIDKTHR-RITFEYSLIKSVNDSYDMSLKLSN 272 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKG+ +NLIP N Y +D + I+ F ++RSG + +R G DI AACGQ Sbjct: 273 LLKGLLCHVNLIPVNYVSEIGYEKADNEKIMAFKNVLERSGITCTVRRELGSDIDAACGQ 332 Query: 365 LKSL 368 L+ Sbjct: 333 LRRK 336 >gi|237650461|ref|ZP_04524713.1| radical SAM enzyme, Cfr family protein [Streptococcus pneumoniae CCRI 1974] gi|237821909|ref|ZP_04597754.1| radical SAM enzyme, Cfr family protein [Streptococcus pneumoniae CCRI 1974M2] Length = 361 Score = 413 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 123/373 (32%), Positives = 209/373 (56%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + ++S+IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N++NV +D G++ R IT+STSG I +E + V LA+SLH Sbjct: 161 GIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L + Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELTE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKRDR 352 >gi|225181331|ref|ZP_03734775.1| radical SAM enzyme, Cfr family [Dethiobacter alkaliphilus AHT 1] gi|225167912|gb|EEG76719.1| radical SAM enzyme, Cfr family [Dethiobacter alkaliphilus AHT 1] Length = 347 Score = 413 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 123/366 (33%), Positives = 192/366 (52%), Gaps = 25/366 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K +L+ + EL+E +G P R Q+ W+Y +G + F M+++ + +R Sbjct: 1 MDKVNLLELSTSELQEFFQSLGQPA----FRAKQVMDWLYQQGAQTFNEMTNLPKGLREQ 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L Q + +V E++S DGT K+L P +ETV +P + C+S+QVG Sbjct: 57 LAQKAVPGFLSVVTEQVSEDGTEKYLFALPD-----GQTVETVVLPYDIGFSACISTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC +G VRNLTA EI+ QVL ++ + G+++ ++V Sbjct: 112 CKMGCLFCASGLPGFVRNLTAAEIMAQVLQVKN--------------ALRKRGKELKSLV 157 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG GEPL NF L D L+ S R +TLSTSG VP I + + + LA+S Sbjct: 158 LMGSGEPLDNFRETIAFLEAVRDPQKLAMSLRHVTLSTSGLVPKIEELAKLGWPLNLAVS 217 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N +R+ ++P+N+ YPLE L+ AC Y + R+T+EY+++ +ND A L Sbjct: 218 LHASNNRVRDKIMPVNKTYPLEPLLSACDTYSRATGR-RVTYEYILIDRLNDKTEHAKEL 276 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LKG +NLIP N S Q + F + +++ G + +R G DI AAC Sbjct: 277 ASLLKGRLCHVNLIPLNAVDELGLKPSPQNTVKQFRDTLRQKGVNVTVRRKLGADIAAAC 336 Query: 363 GQLKSL 368 GQL++ Sbjct: 337 GQLRNE 342 >gi|291527115|emb|CBK92701.1| 23S rRNA m(2)A-2503 methyltransferase [Eubacterium rectale M104/1] Length = 354 Score = 413 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 119/378 (31%), Positives = 208/378 (55%), Gaps = 31/378 (8%) Query: 1 MNFLKKE--SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQ 58 M +K++ + M +EL E ++ +G + R QI++WI+V+ + F M++IS+ Sbjct: 1 MEQIKEQLTDIKSMNMDELTEFIISLG----EKKFRAKQIYEWIHVKHVESFDEMTNISK 56 Query: 59 EVRHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLC 117 + +L + +I + + ++S DGTRK+L + IE+V + K ++C Sbjct: 57 KFIQVLKDNAILISLKKEEVQVSKLDGTRKYLFALDDGNV-----IESVLMKYKHGNSVC 111 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 +SSQVGC + C FC + LVR L E++ Q+ +G+ Sbjct: 112 ISSQVGCRMGCRFCASTLDGLVRGLRPSEMIDQIYQIGKDIGE----------------- 154 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IG 236 +ISN+V+MG GEPL N+DN+ + + + +D G++ S+R +T+ST G VP + ++ +E + Sbjct: 155 RISNVVVMGTGEPLDNYDNLLRFIELLTDENGINISQRNLTVSTCGLVPRMRQLADEKLS 214 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 + LA+SLHA + + R L+P+ Y + ++DAC++Y + R+TFEY ++ G+ND+ Sbjct: 215 ITLALSLHASNQEKRKALMPVANSYDIHDVVDACKYYFAQTGR-RVTFEYSLVGGVNDTA 273 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 DA L ++ G+ INLIP NP +Y+ S++ I F ++++G + IR G Sbjct: 274 EDAAELSALVHGMNCHINLIPVNPIKERDYVQSNKGVIEAFKNRLEKNGINVTIRREMGR 333 Query: 357 DILAACGQLKSLSKRIPK 374 DI ACGQL+ + Sbjct: 334 DIDGACGQLRKKHIDKER 351 >gi|255505596|ref|ZP_05347103.3| radical SAM enzyme, Cfr family [Bryantella formatexigens DSM 14469] gi|255266841|gb|EET60046.1| radical SAM enzyme, Cfr family [Bryantella formatexigens DSM 14469] Length = 354 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 125/367 (34%), Positives = 200/367 (54%), Gaps = 29/367 (7%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 + + ++ L + EEL+ L +G R QI++W++ + Q M+++ ++R Sbjct: 4 DGMNRKDLRSLGYEELQRELEALG----EKPFRAKQIYQWLHEKLADGVQEMTNLPAKLR 59 Query: 62 HLLNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 L+ + E+VD S DGTRK+L R + IE+V + ++C+SS Sbjct: 60 ETLDVRYLCSSLEMVDVLESKADGTRKYLFRLQDGNV-----IESVLMKYHHGNSVCISS 114 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC + C FC + L R+L E+L Q+ + G+ ++S Sbjct: 115 QAGCRMGCRFCASTLGGLTRSLLPGEMLDQIYKIQKHSGE-----------------RVS 157 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239 N+V+MG GEPL N++N+ K + + SD GL+ S+R IT+ST G VPNI R+ E++ + L Sbjct: 158 NVVVMGTGEPLDNYENLVKFIHMLSDEHGLNISQRNITVSTCGIVPNIYRLAAEKLQITL 217 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA + + R L+PI RKY L +++ACR Y + R+TFEY ++ G+NDS DA Sbjct: 218 ALSLHAPTQEKRMELMPIARKYELSEVMEACRAYFRETGR-RLTFEYSLVGGVNDSQEDA 276 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L +L G+ +NLIP NP ++ S+++ I F +++ G + IR G DI Sbjct: 277 RELAVLLDGLNCHVNLIPVNPIKERSFVQSERRVIADFKTKLEKYGINVTIRREMGRDIG 336 Query: 360 AACGQLK 366 ACGQL+ Sbjct: 337 GACGQLR 343 >gi|224541738|ref|ZP_03682277.1| hypothetical protein CATMIT_00910 [Catenibacterium mitsuokai DSM 15897] gi|224525342|gb|EEF94447.1| hypothetical protein CATMIT_00910 [Catenibacterium mitsuokai DSM 15897] Length = 343 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 128/366 (34%), Positives = 206/366 (56%), Gaps = 28/366 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +S+ + E+L+E L +G R QI++WIYV+ + DF M+++S+E++ L+ Sbjct: 3 KSIYDLTLEQLKEELKAMG----QKPFRAKQIYEWIYVKNVYDFHQMTNLSKELQETLSN 58 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 HFS I +++++ DGT K+LL + IETV + + +LCV+SQ+GC++ Sbjct: 59 HFSDALLTIKEKQVARDGTTKYLLELEDGGL-----IETVLMIQTYGRSLCVTSQLGCNM 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 CSFC +G K RNLT+ EI+ QVL + + +++++V+MG Sbjct: 114 GCSFCASGLLKKQRNLTSGEIVKQVLTV-----------------MNDLKERVTHVVVMG 156 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 GEP N+D V + ++ GL+ R +T+ST G +P I R E I V LAISLHA Sbjct: 157 TGEPFDNYDEVMNFIYTVNEPHGLAIGARHLTISTCGLIPGIERFSHEPIQVNLAISLHA 216 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++RN L+PIN++Y ++ L DA + Y +N R+T EY++LK +ND + A L Sbjct: 217 PNDEIRNELMPINKRYNMDDLRDAIKTYIERTNR-RVTLEYILLKDVNDDIKYARQLAHY 275 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G+ +NLIP+NP Y S I F + + R + +R G DI ACGQL Sbjct: 276 LRGLNVYVNLIPYNPVDEHGYKQSLGHTITAFKDELIRLHINCTLRKEHGRDIDGACGQL 335 Query: 366 KSLSKR 371 ++ ++ Sbjct: 336 RAKREK 341 >gi|167760434|ref|ZP_02432561.1| hypothetical protein CLOSCI_02808 [Clostridium scindens ATCC 35704] gi|167661933|gb|EDS06063.1| hypothetical protein CLOSCI_02808 [Clostridium scindens ATCC 35704] Length = 357 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 125/369 (33%), Positives = 203/369 (55%), Gaps = 29/369 (7%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 + K+ + EEL+E + +IG R++QI++W++V+ F M+++S+E+R Sbjct: 1 MMSKKDICSYSFEELKEEIARIG----EKDFRSTQIYEWLHVKLAESFDEMTNLSKELRE 56 Query: 63 LLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L + + I +++D +IS D T K+L + IE+V + ++C+SSQ Sbjct: 57 KLKEEYEIAKVKMIDHQISKVDPTEKFLFELCDGNM-----IESVLMKYNYGNSVCISSQ 111 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC + C FC + L R+L E+L Q+ + + G+ ++SN Sbjct: 112 AGCRMGCRFCASTIGGLERSLAPSEMLRQIYQIQKMTGE-----------------RVSN 154 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240 +V+MG GEPL N+DN K + I SD GL S+R IT ST G VPN+ R+ +E + + LA Sbjct: 155 VVVMGTGEPLDNYDNFVKFIHILSDEHGLHISQRNITASTCGIVPNMKRLADEGLQITLA 214 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLH + + R L+P+ +Y L ++DAC +Y + RITFEY +++G+ND DA Sbjct: 215 LSLHGSTQEKRKRLMPVADRYELPEVLDACDYYFEKTGR-RITFEYSLVEGVNDQMEDAR 273 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 LI IL+ +NLIP NP ++ D+K+ + F ++++G + IR RG DI Sbjct: 274 ELISILRKRNCHLNLIPVNPIKERDFKKPDRKNALEFKNKLEKNGINVTIRRERGSDIDG 333 Query: 361 ACGQLKSLS 369 ACGQL+ Sbjct: 334 ACGQLRRRH 342 >gi|255525649|ref|ZP_05392582.1| radical SAM enzyme, Cfr family [Clostridium carboxidivorans P7] gi|296185409|ref|ZP_06853819.1| radical SAM enzyme, Cfr family [Clostridium carboxidivorans P7] gi|255510635|gb|EET86942.1| radical SAM enzyme, Cfr family [Clostridium carboxidivorans P7] gi|296050243|gb|EFG89667.1| radical SAM enzyme, Cfr family [Clostridium carboxidivorans P7] Length = 349 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 132/368 (35%), Positives = 205/368 (55%), Gaps = 29/368 (7%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +++ + EEL++ + G + R Q++ WIY DF+ M ++ + + L + Sbjct: 3 NILDLSLEELKQWMKDNGESE----FRAKQVFHWIYKNNQWDFEKMDNLPKGTKEKLIKC 58 Query: 68 FSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 F I P+I++ S D T K+L + I IETV + K ++CVS+QVGC + Sbjct: 59 FEIDIPQIIEVYKSENDDTHKFLYEYKDGNI-----IETVVMKYKHGNSICVSTQVGCRM 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC + + +VRNL++ EI+ Q+L A+ +G+ +ISNIV+MG Sbjct: 114 GCKFCASTVEGMVRNLSSGEIIAQILKAQEKIGE-----------------RISNIVLMG 156 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245 GEPL N++NV K LS+ + L+ +R ITLST G VP I + + + + LAISLHA Sbjct: 157 SGEPLDNYENVIKFLSLVNAEYCLNIGQRHITLSTCGIVPKIKELADKDYQITLAISLHA 216 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +++LR ++PI KY + +I+AC++Y +N RITFEY ++K +NDS + A L+K+ Sbjct: 217 ANDELRKTMMPIANKYSINEIIEACKYYISKTNR-RITFEYALVKDVNDSAQSAEELVKL 275 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKGI +NLIP N + S +I FS + + G + IR G DI AACGQL Sbjct: 276 LKGILCHVNLIPVNKVRENNFEKSPTNNIKNFSNILIKKGIETTIRREMGSDINAACGQL 335 Query: 366 KSLSKRIP 373 + + Sbjct: 336 RRSYLKSK 343 >gi|317501928|ref|ZP_07960112.1| cfr family Radical SAM enzyme [Lachnospiraceae bacterium 8_1_57FAA] gi|316896608|gb|EFV18695.1| cfr family Radical SAM enzyme [Lachnospiraceae bacterium 8_1_57FAA] Length = 348 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 117/367 (31%), Positives = 196/367 (53%), Gaps = 29/367 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ + EEL++ L ++G R QI++W++V+ F M+++S ++R L Sbjct: 2 KKDIRAYEYEELQKELERLG----EKPFRAKQIYEWLHVKLADRFDEMTNLSVKLREKLA 57 Query: 66 QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + + I ++ + + S DGT K+L R + +E+V + K ++C+SSQ GC Sbjct: 58 EEYDIFPVQMAERQQSKLDGTNKFLFRLYDGNM-----VESVLMRYKHGNSVCISSQAGC 112 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC + L RNL+A E+L Q+ + ++G+ ++SN+V+ Sbjct: 113 RMGCVFCASTIGGLKRNLSASEMLGQIYQIQKIIGE-----------------RVSNVVI 155 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG GEPL N++N K + I +D GL+ S+R +T+ST G VP I + EE + + LA+SL Sbjct: 156 MGTGEPLDNYNNFLKFIHILTDEHGLNISQRNVTVSTCGIVPKILELAEERLQITLALSL 215 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H + + R L+P+ KY L ++ AC Y + R+TFEY ++ +ND+ DA L Sbjct: 216 HGSTQEKRRKLMPVANKYELGEVLSACDTYFKKTGR-RVTFEYSLVHEVNDTDEDAKELS 274 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++L +NLIP NP + +K + F +++SG + IR G DI ACG Sbjct: 275 ELLAPRNCHLNLIPVNPVKERSFQRPSRKSALNFKNKLEKSGINVTIRREMGSDIDGACG 334 Query: 364 QLKSLSK 370 QL+ + Sbjct: 335 QLRRRYE 341 >gi|159900818|ref|YP_001547065.1| ribosomal RNA large subunit methyltransferase N [Herpetosiphon aurantiacus ATCC 23779] gi|205829775|sp|A9AY55|RLMN_HERA2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|159893857|gb|ABX06937.1| radical SAM enzyme, Cfr family [Herpetosiphon aurantiacus ATCC 23779] Length = 363 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 126/363 (34%), Positives = 200/363 (55%), Gaps = 15/363 (4%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 ++ + + L L ++G P R QI+ +Y + DF M+D+ +R L + Sbjct: 2 NIYDLDLKGLTAQLTELGQPA----FRARQIYAHLYKKLANDFAAMTDLPAALREQLTAN 57 Query: 68 FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEK-SRGTLCVSSQVGCS 125 I E+V E+ + DG TRK L R P + IETV + R T+CVS+Q GC+ Sbjct: 58 LQIGSLELVREQTTDDGLTRKVLWRCPGDAV-----IETVLMIYPPDRATICVSTQAGCA 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG L+RN+++ EI+ QVL L + I V I+N+V M Sbjct: 113 MGCVFCATGKLGLLRNISSGEIMEQVLYFERYLRNEGAA--IAKRHGGPVPDHITNLVFM 170 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 GMGEP N++ ++ +D G + R +T+ST G V I ++ +E + V LA+SLH Sbjct: 171 GMGEPFANYERWWAAVERLNDKQGFNLGARNMTVSTVGLVKGIRQLADEALQVNLAVSLH 230 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++ LR+ L+P+N ++ + L+DA R+Y ++ R++FEYV+L ND+P A L Sbjct: 231 APNDQLRSELMPVNDRFDISDLMDAIRYYTDKTHR-RVSFEYVLLDDKNDTPELAAQLAS 289 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 ++KG+ +NLIP+NP PG S ++ + F ++ +G S +R RG++I AACGQ Sbjct: 290 LVKGMLCHVNLIPWNPIPGTPLTRSHRERVTAFQRVVQAAGISCTVRVERGVEIAAACGQ 349 Query: 365 LKS 367 L + Sbjct: 350 LAA 352 >gi|282600947|ref|ZP_05980240.2| radical SAM enzyme, Cfr family [Subdoligranulum variabile DSM 15176] gi|282570117|gb|EFB75652.1| radical SAM enzyme, Cfr family [Subdoligranulum variabile DSM 15176] Length = 345 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 131/364 (35%), Positives = 202/364 (55%), Gaps = 28/364 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K L EL ++ +G P + R QI+KW++ + + +F M+D + + + Sbjct: 1 MRKICLSDYTLAELTAYIVGLGQP----KFRAKQIFKWLHQKLVTEFTQMTDQPKTLLAV 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L + +I P I ++ S DGT K+LL+ IETV + K T+CVS+QVG Sbjct: 57 LEEQCTIAVPTIRRKQQSKDGTVKYLLQL-----ADGNCIETVLMRYKYGNTVCVSTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C FC + VR+LTA EI ++ A+ G+ ++S+IV Sbjct: 112 CAMGCRFCASTQAGRVRDLTAGEIAAEIYTAQKDSGE-----------------RVSHIV 154 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242 +MG+GEPL NFDNV L I S G++ R I+LST G VP I + + + L++S Sbjct: 155 LMGIGEPLHNFDNVMDFLEIISCPEGVNIGMRNISLSTCGLVPKIDELAKRHLQLTLSVS 214 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA N R+ ++P+N YPLE LI ACR Y + RI+FEY M++G+NDS A L Sbjct: 215 LHAPDNVTRSGMMPVNDAYPLEELIPACRRYQKETGR-RISFEYSMVRGVNDSSEMAQKL 273 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +++ G+ A +NLIP NP G Y +D+ ++ F + ++ G ++ +R G DI AAC Sbjct: 274 ARLIHGMGAHVNLIPINPVDGSPYSATDEANVRRFQQELEHLGVNATVRRRLGTDISAAC 333 Query: 363 GQLK 366 GQL+ Sbjct: 334 GQLR 337 >gi|148989849|ref|ZP_01821143.1| hypothetical protein CGSSp6BS73_01643 [Streptococcus pneumoniae SP6-BS73] gi|147924791|gb|EDK75875.1| hypothetical protein CGSSp6BS73_01643 [Streptococcus pneumoniae SP6-BS73] Length = 361 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 122/373 (32%), Positives = 208/373 (55%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + ++S+IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFAE------------RGQDERVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N++NV +D G++ R I +STSG I +E + V LA+SLH Sbjct: 161 GIGEPFDNYNNVLNFFRTINDDKGMAIGARHIMISTSGLAHKIRDFADEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L + Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKRDR 352 >gi|223984316|ref|ZP_03634459.1| hypothetical protein HOLDEFILI_01753 [Holdemania filiformis DSM 12042] gi|223963716|gb|EEF68085.1| hypothetical protein HOLDEFILI_01753 [Holdemania filiformis DSM 12042] Length = 347 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 124/368 (33%), Positives = 208/368 (56%), Gaps = 25/368 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +++ LEE +L +G + R QI++W+Y + F M+D+S+E+ L + Sbjct: 2 KTIYDYSYSGLEELVLSLGW----KKYRADQIFQWLYRKHATSFDQMTDLSKEMIAALKE 57 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 F I ++V++++S DGT K+L G +E V + +LCV+SQ+GC++ Sbjct: 58 QFCINPIQLVEKQVSRDGTVKFLFEL-----GDGALVECVLMTYNYGRSLCVTSQIGCNM 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC +G K R+LT+ E++ QV+ + + + +IS++V+MG Sbjct: 113 GCTFCASGLLKKQRDLTSGEMVAQVMTVQ--------------LELDKEEDRISHVVVMG 158 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHA 245 GEP N+DNV + + GL+ R IT+STSG +P+I R E LAISLHA Sbjct: 159 TGEPFDNYDNVLNFCNTINHDKGLAIGARHITISTSGLIPSIDRFAAEHKQYNLAISLHA 218 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +++LR+ ++P+N+ YPL L+ R Y + N RR+TFEY++L+G+ND+ A+ L + Sbjct: 219 PTDELRSRIMPVNKAYPLGPLMACLRRY-SVENNRRLTFEYILLQGVNDTNEMAVKLAAL 277 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 ++G+ A +NLIP+N Y +D K + F + + + G + +R G DI AACGQL Sbjct: 278 IRGMNAYVNLIPYNQVDENGYKSTDYKSAMRFYDVLMKQGVKATLRQEHGNDIDAACGQL 337 Query: 366 KSLSKRIP 373 ++ +R+ Sbjct: 338 RAKHERMR 345 >gi|291541044|emb|CBL14155.1| 23S rRNA m(2)A-2503 methyltransferase [Roseburia intestinalis XB6B4] Length = 349 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 115/366 (31%), Positives = 195/366 (53%), Gaps = 29/366 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K + M EEL+ + IG R Q+++W++ + F M+++S+ ++ L Sbjct: 4 EKTDIKSMNLEELKSYMESIG----EKPFRAKQLYQWMHEKQAASFDEMTNLSKSIQEKL 59 Query: 65 NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + + + +IS DGTRK+L + IE+V + K ++C+SSQVG Sbjct: 60 KKECHFVSLKQEAVQISKIDGTRKYLFALDDGNV-----IESVLMRYKHGNSVCISSQVG 114 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC + LVR LT E+L Q+ G+ +++N+V Sbjct: 115 CRMGCRFCASTLDGLVRGLTPSEMLDQIYRITRDTGE-----------------RVANVV 157 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG GEP+ NFDN+ + + + +D GL+ S+R +T+ST G VP + + ++ + + LA+S Sbjct: 158 VMGTGEPMDNFDNLLRFIELLTDENGLNISQRNVTVSTCGIVPKMRELADKKLQITLALS 217 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA S + R L+P+ KY + +I+ACR+Y + R+TFEY ++ G+ND+ D L Sbjct: 218 LHASSQEKRLELMPVANKYEIHEVIEACRYYFEQTGR-RVTFEYSLVGGVNDTDEDVRRL 276 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++ G+ +NLIP NP Y+ D + I+ F ++++ + IR G DI AC Sbjct: 277 ADLIHGMNCHVNLIPVNPIKERSYVQPDHEAILNFKNRLEKNAINVTIRREMGRDIDGAC 336 Query: 363 GQLKSL 368 GQL+ Sbjct: 337 GQLRKR 342 >gi|94988886|ref|YP_596987.1| ribosomal RNA large subunit methyltransferase N [Streptococcus pyogenes MGAS9429] gi|94992778|ref|YP_600877.1| ribosomal RNA large subunit methyltransferase N [Streptococcus pyogenes MGAS2096] gi|122986917|sp|Q1JAS5|RLMN_STRPB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123382514|sp|Q1JKX6|RLMN_STRPC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|94542394|gb|ABF32443.1| radical SAM family enzyme [Streptococcus pyogenes MGAS9429] gi|94546286|gb|ABF36333.1| Radical SAM family enzyme [Streptococcus pyogenes MGAS2096] Length = 359 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 127/373 (34%), Positives = 208/373 (55%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+EL ++ G + R +QIW W+Y + ++ F+ M++IS++ +LN Sbjct: 2 KPSIYSLTRDELIAWAVERG----QKQFRATQIWDWLYKKRVQSFEEMTNISKDFVSILN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DSFCVNPLKQRVVQESADGTVKYLFELPDGML-----IETVLMRQHYGHSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L + EI Q++L + D G ++S++V+M Sbjct: 113 IGCTFCASGLIKKQRDLNSGEITAQIMLVQKYFDD------------RKQGERVSHVVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+ NV L + +D GL+ R IT+STSG I E + V LA+SLH Sbjct: 161 GIGEPFDNYKNVMCFLRVINDDNGLAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +NDLR+ ++ +NR +PLE L A +Y +N R+TFEY+ML +NDS + A L Sbjct: 221 APNNDLRSRIMRVNRSFPLEKLFSAIEYYIEKTNR-RVTFEYIMLNEVNDSIKQAQELAD 279 Query: 305 ILK--GIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 + K + +NLIP+NP + Y S ++ ++ F + +K++G + +R G DI AA Sbjct: 280 LTKTIRKLSYVNLIPYNPVSEHDQYSRSLKERVLAFYDVLKKNGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSKTMKKDR 352 >gi|148997156|ref|ZP_01824810.1| hypothetical protein CGSSp11BS70_10350 [Streptococcus pneumoniae SP11-BS70] gi|168575427|ref|ZP_02721363.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae MLV-016] gi|194397178|ref|YP_002037414.1| ribosomal RNA large subunit methyltransferase N [Streptococcus pneumoniae G54] gi|307067370|ref|YP_003876336.1| putative Fe-S-cluster redox enzyme [Streptococcus pneumoniae AP200] gi|254807215|sp|B5E369|RLMN_STRP4 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|147756856|gb|EDK63896.1| hypothetical protein CGSSp11BS70_10350 [Streptococcus pneumoniae SP11-BS70] gi|183578600|gb|EDT99128.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae MLV-016] gi|194356845|gb|ACF55293.1| radical SAM enzyme, Cfr family protein [Streptococcus pneumoniae G54] gi|306408907|gb|ADM84334.1| Predicted Fe-S-cluster redox enzyme [Streptococcus pneumoniae AP200] gi|332202631|gb|EGJ16700.1| radical SAM superfamily protein [Streptococcus pneumoniae GA41317] Length = 361 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 123/373 (32%), Positives = 209/373 (56%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMCQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + ++S+IV+M Sbjct: 113 IGCTFCSSGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N++NV +D G++ R IT+STSG I +E + V LA+SLH Sbjct: 161 GIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L + Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELTE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKRDR 352 >gi|149003387|ref|ZP_01828276.1| hypothetical protein CGSSp14BS69_05262 [Streptococcus pneumoniae SP14-BS69] gi|303255819|ref|ZP_07341860.1| hypothetical protein CGSSpBS455_10019 [Streptococcus pneumoniae BS455] gi|303260232|ref|ZP_07346203.1| hypothetical protein CGSSp9vBS293_03308 [Streptococcus pneumoniae SP-BS293] gi|303261439|ref|ZP_07347387.1| hypothetical protein CGSSp14BS292_08890 [Streptococcus pneumoniae SP14-BS292] gi|303264106|ref|ZP_07350027.1| hypothetical protein CGSSpBS397_05867 [Streptococcus pneumoniae BS397] gi|303266283|ref|ZP_07352174.1| hypothetical protein CGSSpBS457_03820 [Streptococcus pneumoniae BS457] gi|303268722|ref|ZP_07354512.1| hypothetical protein CGSSpBS458_06844 [Streptococcus pneumoniae BS458] gi|147758570|gb|EDK65568.1| hypothetical protein CGSSp14BS69_05262 [Streptococcus pneumoniae SP14-BS69] gi|302597203|gb|EFL64308.1| hypothetical protein CGSSpBS455_10019 [Streptococcus pneumoniae BS455] gi|302637573|gb|EFL68060.1| hypothetical protein CGSSp14BS292_08890 [Streptococcus pneumoniae SP14-BS292] gi|302638556|gb|EFL69020.1| hypothetical protein CGSSpBS293_03308 [Streptococcus pneumoniae SP-BS293] gi|302641782|gb|EFL72139.1| hypothetical protein CGSSpBS458_06844 [Streptococcus pneumoniae BS458] gi|302644213|gb|EFL74469.1| hypothetical protein CGSSpBS457_03820 [Streptococcus pneumoniae BS457] gi|302646511|gb|EFL76737.1| hypothetical protein CGSSpBS397_05867 [Streptococcus pneumoniae BS397] Length = 361 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 122/373 (32%), Positives = 209/373 (56%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ ++ + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLVHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + ++S+IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N++NV +D G++ R IT+S SG I +E + V LA+SLH Sbjct: 161 GIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSISGLAHKIRDFADEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L + Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKRDR 352 >gi|149007648|ref|ZP_01831265.1| hypothetical protein CGSSp18BS74_04131 [Streptococcus pneumoniae SP18-BS74] gi|147760803|gb|EDK67774.1| hypothetical protein CGSSp18BS74_04131 [Streptococcus pneumoniae SP18-BS74] Length = 361 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 122/373 (32%), Positives = 208/373 (55%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DQFVVNPLKQGIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + ++S+IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFAE------------RGQDERVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N++NV +D G++ R IT+STSG I +E + V LA+SLH Sbjct: 161 GIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ INR +P+E L A +Y +N +TFEY+ML +ND AL L + Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRG-VTFEYIMLNEVNDGVEQALELTE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKRDR 352 >gi|168484426|ref|ZP_02709378.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae CDC1873-00] gi|172042321|gb|EDT50367.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae CDC1873-00] gi|332077182|gb|EGI87644.1| radical SAM superfamily protein [Streptococcus pneumoniae GA17545] gi|332203922|gb|EGJ17989.1| radical SAM superfamily protein [Streptococcus pneumoniae GA47368] Length = 361 Score = 411 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 122/373 (32%), Positives = 208/373 (55%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + ++S+IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFAE------------RGQDERVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N++NV +D G++ R IT+STSG I +E + V LA+SLH Sbjct: 161 GIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ INR +P+E L A +Y +N +TFEY+ML +ND AL L + Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRG-VTFEYIMLNEVNDGVEQALELTE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKRDR 352 >gi|153815685|ref|ZP_01968353.1| hypothetical protein RUMTOR_01921 [Ruminococcus torques ATCC 27756] gi|331088258|ref|ZP_08337177.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae bacterium 3_1_46FAA] gi|145846926|gb|EDK23844.1| hypothetical protein RUMTOR_01921 [Ruminococcus torques ATCC 27756] gi|330408502|gb|EGG87968.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae bacterium 3_1_46FAA] Length = 355 Score = 411 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 117/367 (31%), Positives = 196/367 (53%), Gaps = 29/367 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ + EEL++ L ++G R QI++W++V+ F M+++S ++R L Sbjct: 9 KKDIRAYEYEELQKELERLG----EKPFRAKQIYEWLHVKLADRFDEMTNLSVKLREKLA 64 Query: 66 QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + + I ++ + + S DGT K+L R + +E+V + K ++C+SSQ GC Sbjct: 65 EEYDIFPVQMAERQQSKLDGTNKFLFRLYDGNM-----VESVLMRYKHGNSVCISSQAGC 119 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC + L RNL+A E+L Q+ + ++G+ ++SN+V+ Sbjct: 120 RMGCVFCASTIGGLKRNLSASEMLGQIYQIQKIIGE-----------------RVSNVVI 162 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG GEPL N++N K + I +D GL+ S+R +T+ST G VP I + EE + + LA+SL Sbjct: 163 MGTGEPLDNYNNFLKFIHILTDEHGLNISQRNVTVSTCGIVPKILELAEERLQITLALSL 222 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H + + R L+P+ KY L ++ AC Y + R+TFEY ++ +ND+ DA L Sbjct: 223 HGSTQEKRRKLMPVANKYELGEVLSACDTYFKKTGR-RVTFEYSLVHEVNDTDEDAKELS 281 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++L +NLIP NP + +K + F +++SG + IR G DI ACG Sbjct: 282 ELLAPRNCHLNLIPVNPVKERSFQRPSRKSALNFKNKLEKSGINVTIRREMGSDIDGACG 341 Query: 364 QLKSLSK 370 QL+ + Sbjct: 342 QLRRRYE 348 >gi|288941010|ref|YP_003443250.1| radical SAM enzyme, Cfr family [Allochromatium vinosum DSM 180] gi|288896382|gb|ADC62218.1| radical SAM enzyme, Cfr family [Allochromatium vinosum DSM 180] Length = 365 Score = 411 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 157/383 (40%), Positives = 220/383 (57%), Gaps = 28/383 (7%) Query: 1 MNFLK-KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59 MN K + + + E + +G ++KW++ G+ DF M+D+ + Sbjct: 1 MNATSTKPNPLDLDLAGCESLVTALGFKA----FHGRNLFKWMHKHGVVDFDAMTDLPKS 56 Query: 60 VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119 +R +L + I P I+ S DGT KW++ +ETV+IPE R T+CVS Sbjct: 57 LRTVLLETVEIRLPRILQTHPSADGTVKWVMELVD-----GQRVETVFIPEGKRSTICVS 111 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 SQVGC+L C+FC T Q RNL+ EI+ QV A LG P Sbjct: 112 SQVGCALECAFCATARQGFNRNLSVAEIIGQVWHAARQLGAAP----------------- 154 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 +N+VMMGMGEPL NF+ K++ + D + +K+R+TLSTSG VPNI R+ E V L Sbjct: 155 TNVVMMGMGEPLANFEAAVKAMDVMQDDLAYMLAKQRVTLSTSGIVPNIYRLREVSDVSL 214 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA +++LR+ LVPINRKYPL LI AC+HY R+IT+EYVML GINDSP A Sbjct: 215 AVSLHAPNDELRDELVPINRKYPLAELIPACKHYVAGDKRRKITWEYVMLDGINDSPAHA 274 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 LI++L+G+P+K+NLIPFNP+ G ++ S + TF E + RSG + R RG +I Sbjct: 275 KQLIRLLEGVPSKVNLIPFNPFTGSDFGTSPPDRVETFRERLARSGIFAMTRKTRGDEIA 334 Query: 360 AACGQLKSLSK-RIPKVPRQEMQ 381 AACGQL + R ++ R ++ Sbjct: 335 AACGQLVGRVQDRTGRLGRIRVE 357 >gi|149180610|ref|ZP_01859114.1| hypothetical protein BSG1_16675 [Bacillus sp. SG-1] gi|148851763|gb|EDL65909.1| hypothetical protein BSG1_16675 [Bacillus sp. SG-1] Length = 358 Score = 411 bits (1057), Expect = e-113, Method: Composition-based stats. Identities = 130/375 (34%), Positives = 208/375 (55%), Gaps = 26/375 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K S+ G+ ++L +++ G + R +QIW W+Y + + +F M +I L Sbjct: 1 MEKNSIYGLTIDQLTSWIVENG----EKKFRAAQIWDWLYKKRVTNFADMKNIGANCITL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L ++F + + ++ S DGT K+L + + IETV + ++CV++QVG Sbjct: 57 LEENFHLGTLKEEIKQESKDGTIKFLFKLQDGNL-----IETVLMKFNYGYSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ CSFC +G K R+L++ EI+ Q++ + + ++S+IV Sbjct: 112 CNIGCSFCASGLLKKNRDLSSGEIVEQIMNVQLH------------LDSKGNDERVSHIV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N+DN+ L + +D GLS R IT+STSG I +E I V LA+S Sbjct: 160 VMGIGEPFDNYDNLMDFLRVVNDQKGLSIGARHITVSTSGLANRIYDWADENIQVNLAVS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR ++ IN+ YPLE L+ A +Y +N RITFEY++L+ +ND +AL L Sbjct: 220 LHAPNNELRTQIMKINKAYPLEKLMPAIDYYLEKTNR-RITFEYILLQDVNDHKAEALQL 278 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 K+LK + +NLIP+NP +Y S ++ IV F + G + +RT G DI Sbjct: 279 AKLLKNKKHLSYVNLIPYNPVDEHGQYQRSTKEAIVEFYGTLLDQGINCGVRTEHGTDID 338 Query: 360 AACGQLKSLSKRIPK 374 AACGQL+S + K Sbjct: 339 AACGQLRSKQIKKDK 353 >gi|108757013|ref|YP_631737.1| radical SAM protein [Myxococcus xanthus DK 1622] gi|123074312|sp|Q1D6I6|RLMN2_MYXXD RecName: Full=Ribosomal RNA large subunit methyltransferase N 2; AltName: Full=23S rRNA m2A2503 methyltransferase 2 gi|108460893|gb|ABF86078.1| radical SAM enzyme, Cfr family [Myxococcus xanthus DK 1622] Length = 378 Score = 411 bits (1057), Expect = e-113, Method: Composition-based stats. Identities = 146/364 (40%), Positives = 205/364 (56%), Gaps = 18/364 (4%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + + E L + + R QI++W++ RG F M+D+S+ +R L Sbjct: 24 VDVASLSLEALSRFVTE---ELGERAFRAPQIYRWLHQRGATSFDEMTDLSKVLREKLRA 80 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I+ E S DGT K+ + IE+VY+P + R TLCVS+QVGC++ Sbjct: 81 RAEIVPLVKDCELRSTDGTIKYRWKTRD-----GRYIESVYMPTEDRRTLCVSTQVGCAM 135 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TGT L RNLT EI+ QV + G E + R +SN+V MG Sbjct: 136 ACGFCMTGTMGLKRNLTPSEIVAQVHAVNREVRKNEGHETL---------RPLSNLVFMG 186 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL NF+N+K +LSI G +FS R IT+ST G VP I R G+E V LAISL+A Sbjct: 187 MGEPLHNFENLKTALSILQSEDGPNFSHRHITVSTVGLVPMIERFGKETDVKLAISLNAS 246 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 +++ R+ +P+NRK+ + L+DACR +P L RRITFEYV++KG ND+ DA LI++L Sbjct: 247 TDEQRSKTMPVNRKWNIAALLDACRKFP-LRQGRRITFEYVLIKGFNDADEDAHRLIELL 305 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 KGIP K+NLIP+N PG + + ++ F + ++ IR RG DI ACGQL Sbjct: 306 KGIPVKVNLIPYNENPGLGFHTTGEERAEEFRAILADGHVAAYIRRNRGRDIAGACGQLA 365 Query: 367 SLSK 370 + + Sbjct: 366 NRGE 369 >gi|77919618|ref|YP_357433.1| ribosomal RNA large subunit methyltransferase N [Pelobacter carbinolicus DSM 2380] gi|123729427|sp|Q3A2Z4|RLMN_PELCD RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|77545701|gb|ABA89263.1| 23S rRNA m(2)A-2503 methyltransferase [Pelobacter carbinolicus DSM 2380] Length = 371 Score = 411 bits (1057), Expect = e-113, Method: Composition-based stats. Identities = 150/369 (40%), Positives = 214/369 (57%), Gaps = 30/369 (8%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M+ + L EEL E L +G R R Q+ +W+Y R + DF MSD+S+ + Sbjct: 5 MDQDTRIDLKNFTLEELTEFLAGMG----KERFRAGQVMRWMYHRLVDDFDAMSDLSKVL 60 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVS 119 R L+Q I + S DGTRK+L R IE+V IP + +R TLC+S Sbjct: 61 RAELHQRARISRLTPEATEDSRDGTRKYLFRLED-----GETIESVRIPMDDNRATLCIS 115 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 +QVGC++ C FC+TG+ LVRNLT EI+ QV A + Sbjct: 116 TQVGCAMGCVFCHTGSFGLVRNLTPGEIVNQVCAA-------------------LADGPV 156 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 +NIV+MGMGEPL N DNV K+L I GL +S R++TLST+G VP + +G+ + V L Sbjct: 157 NNIVLMGMGEPLHNLDNVVKALQILYMPQGLDYSPRKVTLSTAGLVPQMQELGKRVRVNL 216 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SL+A ++++RN L+P+N++YPL+ L+ ACR YP L +RITFEY++++ +NDS +DA Sbjct: 217 AVSLNATTDEVRNRLMPVNQRYPLQQLMAACRQYP-LHAKKRITFEYILIRDVNDSDQDA 275 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L+K+L GI AK+N+IPFN E+ ++ I F + G + R +G DI Sbjct: 276 RRLVKLLHGIKAKVNIIPFNEHSASEFRAPTEERISRFQGYLLDHGMVAIRRASKGQDIS 335 Query: 360 AACGQLKSL 368 AACGQLK Sbjct: 336 AACGQLKGK 344 >gi|15900662|ref|NP_345266.1| ribosomal RNA large subunit methyltransferase N [Streptococcus pneumoniae TIGR4] gi|81620462|sp|Q97RN5|RLMN_STRPN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|14972243|gb|AAK74906.1| conserved hypothetical protein [Streptococcus pneumoniae TIGR4] Length = 361 Score = 411 bits (1057), Expect = e-113, Method: Composition-based stats. Identities = 124/373 (33%), Positives = 210/373 (56%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ ++ + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLVHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + +IS+IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERISHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N++NV +D G++ R IT+STSG I +E + V LA+SLH Sbjct: 161 GIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L + Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELTE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKECVLAFYDTLKKKGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKRDR 352 >gi|15672161|ref|NP_266335.1| hypothetical protein L184159 [Lactococcus lactis subsp. lactis Il1403] gi|81621772|sp|Q9CJ27|RLMN_LACLA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|12723031|gb|AAK04277.1|AE006255_7 hypothetical protein L184159 [Lactococcus lactis subsp. lactis Il1403] Length = 365 Score = 411 bits (1057), Expect = e-113, Method: Composition-based stats. Identities = 129/376 (34%), Positives = 212/376 (56%), Gaps = 27/376 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + S+ G+ R++L E ++ G + R +Q+W W+Y + ++ F+ MS++S LN Sbjct: 10 RPSIYGLTRDQLIEWAIENG----EKKFRATQVWDWLYRKRVQSFEEMSNLSAAFIDKLN 65 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +HF + E V + S DGT K+L P + + IETV + + ++CV++QVGC+ Sbjct: 66 EHFILNPLEQVVVQESADGTVKYLFMLPDQMM-----IETVLMRQSYGLSVCVTTQVGCN 120 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R++TA EI+ Q++L + + + ++S++V+M Sbjct: 121 MGCTFCASGILKKERDVTAGEIVSQIMLVQKYFDE------------RGLDERVSHVVVM 168 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP-NIARVGEE-IGVMLAISL 243 G+GEP N++++ L + +D GL+ R IT+ST GF+P I E + + LAISL Sbjct: 169 GIGEPFDNYEHLMNFLRVINDDNGLAIGARHITVSTCGFMPAKIKEFAHENLQINLAISL 228 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +N+LR L+ I R PLE L +A +Y +N R+T+EY+ML G NDSP A L Sbjct: 229 HAPNNELRTSLMRITRNAPLEKLFEAIDYYTETTNR-RVTYEYIMLSGENDSPEIAQQLA 287 Query: 304 KILK--GIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 ++K + +NLIP+NP +Y S + + F + +K++G + +R G DI A Sbjct: 288 DLIKPRNKLSYVNLIPYNPVAEHIKYERSTKDNTAKFYDVLKKNGINCVVRQEHGTDIDA 347 Query: 361 ACGQLKSLSKRIPKVP 376 ACGQL+S + K Sbjct: 348 ACGQLRSKQIKKNKAK 363 >gi|281490670|ref|YP_003352650.1| radical SAM family enzyme [Lactococcus lactis subsp. lactis KF147] gi|281374439|gb|ADA63960.1| Radical SAM family enzyme [Lactococcus lactis subsp. lactis KF147] Length = 365 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 129/376 (34%), Positives = 212/376 (56%), Gaps = 27/376 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + S+ G+ R++L E ++ G + R +Q+W W+Y + ++ F+ MS++S LN Sbjct: 10 RPSIYGLTRDQLIEWAIENG----EKKFRATQVWDWLYRKRVQSFEEMSNLSAAFIDKLN 65 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +HF + E V + S DGT K+L P + + IETV + + ++CV++QVGC+ Sbjct: 66 EHFILNPLEQVVVQESADGTVKYLFMLPDKMM-----IETVLMRQSYGLSVCVTTQVGCN 120 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R++TA EI+ Q++L + + + ++S++V+M Sbjct: 121 MGCTFCASGILKKERDVTAGEIVSQIMLVQKYFDE------------RGLDERVSHVVVM 168 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP-NIARVGEE-IGVMLAISL 243 G+GEP N++++ L + +D GL+ R IT+ST GF+P I E + + LAISL Sbjct: 169 GIGEPFDNYEHLMNFLRVINDDNGLAIGARHITVSTCGFMPAKIKEFAHENLQINLAISL 228 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +N+LR L+ I R PLE L +A +Y +N R+T+EY+ML G NDSP A L Sbjct: 229 HAPNNELRTSLMRITRNAPLEKLFEAIDYYTETTNR-RVTYEYIMLSGENDSPEIAQQLA 287 Query: 304 KILK--GIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 ++K + +NLIP+NP +Y S + + F + +K++G + +R G DI A Sbjct: 288 DLIKPRNKLSYVNLIPYNPVAEHIKYERSTKDNTAKFYDVLKKNGINCVVRQEHGTDIDA 347 Query: 361 ACGQLKSLSKRIPKVP 376 ACGQL+S + K Sbjct: 348 ACGQLRSKQIKKNKAK 363 >gi|317121759|ref|YP_004101762.1| 23S rRNA m(2)A-2503 methyltransferase [Thermaerobacter marianensis DSM 12885] gi|315591739|gb|ADU51035.1| 23S rRNA m(2)A-2503 methyltransferase [Thermaerobacter marianensis DSM 12885] Length = 448 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 127/361 (35%), Positives = 198/361 (54%), Gaps = 26/361 (7%) Query: 11 GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70 G++ EEL L G P R QI+ W++ RG+ F M+D+ +++R L Sbjct: 103 GLLPEELGRVLSAWGEPA----YRGRQIFAWLHRRGVTRFAEMTDLPKDLRRRLEALGDP 158 Query: 71 IYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129 + P + ++ DGTRK+LL + IETV + + +LCVSSQVGC++ C Sbjct: 159 VVPAVRRLQVDPQDGTRKYLLELEDGQL-----IETVLMRHRYGLSLCVSSQVGCAMGCR 213 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 FC + LVRNLTA E+ Q+L+ L + G+++S++V+MG+GE Sbjct: 214 FCASTLGGLVRNLTAAEMAGQLLVVNRDLAE--------------RGQRVSHVVVMGIGE 259 Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248 PL N D + L +A G S R +T+STSG VP I ++ + + LA+SLHA ++ Sbjct: 260 PLQNLDATLQFLRVAHHPQGAGISYRHMTVSTSGLVPRIRQLAHAGLPITLAVSLHAPND 319 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 LR+ L+P+NR++P+ L+DACR Y + RITFEYV+++ +ND P A L ++ G Sbjct: 320 ALRSWLMPVNRRWPIAELMDACREYVERTGR-RITFEYVLIEDVNDRPEHAAELADLVAG 378 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 + +NLIP+NP + + + F ++R G + +R G I AACGQL+ Sbjct: 379 LNGHVNLIPWNPVSERPFRAPSPERVQAFVAALRRRGVNVTVRRELGQRIEAACGQLRRR 438 Query: 369 S 369 + Sbjct: 439 A 439 >gi|225858576|ref|YP_002740086.1| ribosomal RNA large subunit methyltransferase N [Streptococcus pneumoniae 70585] gi|254807216|sp|C1C6B0|RLMN_STRP7 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|225721405|gb|ACO17259.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae 70585] Length = 361 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 122/373 (32%), Positives = 208/373 (55%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMCQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + ++S+IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N++NV +D G++ R IT+STSG I +E + V LA+SLH Sbjct: 161 GIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ INR +P+E L A +Y +N +TFEY+ML +ND AL L + Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRG-VTFEYIMLNEVNDGVEQALELTE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKRDR 352 >gi|220903723|ref|YP_002479035.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868022|gb|ACL48357.1| radical SAM enzyme, Cfr family [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 386 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 139/371 (37%), Positives = 200/371 (53%), Gaps = 27/371 (7%) Query: 7 ESLIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 +L+ + ELE ++G P + R Q+W+WI+ R RDF M++IS+ R LL Sbjct: 24 TNLLNLTLPELEAWTQSELGEP----KFRAMQLWQWIWQRMARDFDTMTNISRPCRELLA 79 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVSS 120 I++PE+ + S DGT K+LLR +IETV IP S R T C+S Sbjct: 80 AKACIVWPEVSAVEESRDGTTKFLLRLED-----GAQIETVLIPSDSREGVRRWTQCLSC 134 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC++ C+FC TG RN+T EIL Q+L+AR LGD I + Sbjct: 135 QVGCTMGCTFCSTGQMGFERNMTMGEILGQILVAREHLGDTRLHWPI-----------LR 183 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+V MGMGEPL N V +SL ++ GL FS RRIT+ST G + +GE LA Sbjct: 184 NLVFMGMGEPLLNLKEVMRSLESLNNDKGLGFSPRRITVSTCGIEKGLKELGESGLAFLA 243 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA + +R ++P ++ L L+ A + YP L ITFEY+ML G+NDS A Sbjct: 244 VSLHAPNQAVRERIMPKAARWRLNDLMAALKSYP-LKTREHITFEYLMLGGVNDSLEHAR 302 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L ++ + K+N+I +N G Y ++ I+ F + + ++ IR +G DI A Sbjct: 303 ELAPLVSAVKGKLNIIVYNAAEGSPYQAPSEERILAFEKYLWSKDITAIIRKSKGQDIKA 362 Query: 361 ACGQLKSLSKR 371 ACGQLK+ ++ Sbjct: 363 ACGQLKAARQK 373 >gi|148992431|ref|ZP_01822126.1| hypothetical protein CGSSp9BS68_08432 [Streptococcus pneumoniae SP9-BS68] gi|168488437|ref|ZP_02712636.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae SP195] gi|147928748|gb|EDK79761.1| hypothetical protein CGSSp9BS68_08432 [Streptococcus pneumoniae SP9-BS68] gi|183572944|gb|EDT93472.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae SP195] gi|332073108|gb|EGI83587.1| radical SAM superfamily protein [Streptococcus pneumoniae GA17570] Length = 361 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 124/373 (33%), Positives = 209/373 (56%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DQFVVNPLKQGIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + ++S+IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N++NV +D G++ R IT+STSG I +E + V LA+SLH Sbjct: 161 GIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +NDS AL L + Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDSVEQALELTE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA Sbjct: 280 LLKNIKKLSYANLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKRDR 352 >gi|326405757|gb|ADZ62828.1| radical SAM family enzyme [Lactococcus lactis subsp. lactis CV56] Length = 365 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 129/376 (34%), Positives = 212/376 (56%), Gaps = 27/376 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + S+ G+ R++L E ++ G + R +Q+W W+Y + ++ F+ MS++S LN Sbjct: 10 RPSIYGLTRDQLIEWAIENG----EKKFRATQVWDWLYRKRVQSFEEMSNLSAAFIDKLN 65 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +HF + E V + S DGT K+L P + + IETV + + ++CV++QVGC+ Sbjct: 66 EHFILNTLEQVVVQESADGTVKYLFMLPDKMM-----IETVLMRQSYGLSVCVTTQVGCN 120 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R++TA EI+ Q++L + + + ++S++V+M Sbjct: 121 MGCTFCASGILKKERDVTAGEIVSQIMLVQKYFDE------------RGLDERVSHVVVM 168 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP-NIARVGEE-IGVMLAISL 243 G+GEP N++++ L + +D GL+ R IT+ST GF+P I E + + LAISL Sbjct: 169 GIGEPFDNYEHLMNFLRVINDDNGLAIGARHITVSTCGFMPAKIKEFAHENLQINLAISL 228 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +N+LR L+ I R PLE L +A +Y +N R+T+EY+ML G NDSP A L Sbjct: 229 HAPNNELRTSLMRITRNAPLEKLFEAIDYYTETTNR-RVTYEYIMLSGENDSPEIAQQLA 287 Query: 304 KILK--GIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 ++K + +NLIP+NP +Y S + + F + +K++G + +R G DI A Sbjct: 288 DLIKPRNKLSYVNLIPYNPVAEHIKYERSTKDNTAKFYDVLKKNGINCVVRQEHGTDIDA 347 Query: 361 ACGQLKSLSKRIPKVP 376 ACGQL+S + K Sbjct: 348 ACGQLRSKQIKKNKAK 363 >gi|302392191|ref|YP_003828011.1| 23S rRNA m(2)A-2503 methyltransferase [Acetohalobium arabaticum DSM 5501] gi|302204268|gb|ADL12946.1| 23S rRNA m(2)A-2503 methyltransferase [Acetohalobium arabaticum DSM 5501] Length = 350 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 144/370 (38%), Positives = 207/370 (55%), Gaps = 24/370 (6%) Query: 3 FLKKESLIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 K LI ELE + ++G R QI+ WIY +G +F+ M+++SQ +R Sbjct: 1 MTDKAELISFDLTELENFINNELG----EASFRAEQIFNWIYKQGAVNFEEMTNLSQGLR 56 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSS 120 L I + S DGT K+L EIETV++P + R ++CVS+ Sbjct: 57 SRLQSKAYIQQLTEITRAKSEDGTVKFLFELEDNK-----EIETVFLPYQDGRNSICVST 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC + C+FC TG Q L RNLT EI+ Q+L + L+G + IS Sbjct: 112 QVGCGMGCNFCATGQQGLERNLTTGEIVSQILKVQQLMGSNGYDPSL-----------IS 160 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVML 239 N+V MGMGEPL N+DN + + I + L+ S RRIT+ST G VP I R+ + E+ ++L Sbjct: 161 NVVFMGMGEPLANYDNFLRVIDILNSEKALNISMRRITVSTCGLVPQIKRLADKELQLVL 220 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 AISLHA + LR+ ++PIN++YPLE LI AC +Y +N RITFEY ++ G+N+ +DA Sbjct: 221 AISLHAAEDKLRSEMMPINKRYPLEELIAACEYYLQKTNR-RITFEYALVDGVNNRRQDA 279 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L ++L G+ +NLIP NP ++K I F E + R + +R RG DI Sbjct: 280 EKLAQLLSGLLCHVNLIPVNPVKELGLTRPNRKAIKEFKEILDRHNIQATVRQERGNDIE 339 Query: 360 AACGQLKSLS 369 AACGQL++ + Sbjct: 340 AACGQLRTEN 349 >gi|225418643|ref|ZP_03761832.1| hypothetical protein CLOSTASPAR_05867 [Clostridium asparagiforme DSM 15981] gi|225041830|gb|EEG52076.1| hypothetical protein CLOSTASPAR_05867 [Clostridium asparagiforme DSM 15981] Length = 368 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 133/385 (34%), Positives = 213/385 (55%), Gaps = 33/385 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K + M EELE L ++G R QI+ W++V+ F+ M+ IS+E++ L+ Sbjct: 10 KIDIKSMTPEELEAFLKELG----EKPFRAKQIYDWLHVKLAERFEEMTSISKELQRKLD 65 Query: 66 QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 S+ +VDEKIS DGTRK+L I IE+V++ ++C+SSQ GC Sbjct: 66 AACSLTCLRVVDEKISTIDGTRKYLFALADGNI-----IESVWMQYHHGNSVCISSQAGC 120 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC + L RNL E+L Q+ + + G+ ++SN+V+ Sbjct: 121 RMGCRFCASTLDGLARNLRPSEMLDQIYRIQRITGE-----------------RVSNVVV 163 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG GEP+ N+DN+ + + + S GL+ S+R +T+ST G VP I R+ EE + LA+SL Sbjct: 164 MGSGEPMDNYDNLVRFIRLISHEKGLNISQRNLTVSTCGLVPEIRRLAEEGFQITLALSL 223 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++R L+PI +Y L+ ++ ACR+Y + R+TFEY ++ G+ND+ R+A L Sbjct: 224 HAPDDEVRKTLMPIANRYCLKDVLAACRYYYQQTGR-RLTFEYSLVHGVNDNLREAAALA 282 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+++ +NLIP NP +++ S QK+I F ++++G + IR G DI ACG Sbjct: 283 KLIRHEHGHVNLIPVNPIKERDFVQSGQKEIQDFKNLLEKNGINVTIRREMGRDIGGACG 342 Query: 364 QLKS---LSKRIPKVPRQEM-QITG 384 QL+ ++ R EM + +G Sbjct: 343 QLRKGFLDEEKAQSGRRDEMTERSG 367 >gi|258406363|ref|YP_003199105.1| ribosomal RNA large subunit methyltransferase N [Desulfohalobium retbaense DSM 5692] gi|257798590|gb|ACV69527.1| radical SAM enzyme, Cfr family [Desulfohalobium retbaense DSM 5692] Length = 359 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 134/366 (36%), Positives = 208/366 (56%), Gaps = 23/366 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++ +++ + ++L L + G P R R QIW+W++++G F+ M+++S+ +R Sbjct: 1 MRPKTIHDISFDDLAAWLTEQGQP----RFRAEQIWQWLWIKGATSFEDMTNVSKSLRSA 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L+Q F I P + + S DGTRK+LL + +ETV IP T C+S+QVG Sbjct: 57 LSQVFPIALPTVAEVHTSADGTRKFLLNLHDGHV-----LETVLIPGGEHFTQCLSTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L C+FC TG L RNL+A EI QV++AR+ L G ++ N+V Sbjct: 112 CNLGCTFCSTGQMGLTRNLSAAEIAGQVIVARNHLWQT------------GTGMRLRNLV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MGMGEPL N++NV +L + ++FS RR+T+ST G + +G LA+SL Sbjct: 160 FMGMGEPLLNWENVDNALDRLIHASAMNFSPRRVTVSTVGVPGTLDALGHSHKASLAVSL 219 Query: 244 HAVSNDLRNILVPINRKY-PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 HA + +LR ++P + PL L+ R YP ++ +R+T EYV+L G+NDS A L Sbjct: 220 HAPNQELREKIMPRAARMLPLPDLLARLRSYP-MAPRQRVTIEYVLLGGVNDSLDQARQL 278 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++ L GI K+NLI FNP PG Y + + ++ F ++ G ++ +R +G DI AAC Sbjct: 279 VRCLNGIRCKVNLIAFNPCPGLPYSAPETEQVLAFETLLRDKGLTATLRKSKGQDISAAC 338 Query: 363 GQLKSL 368 GQLK+ Sbjct: 339 GQLKTR 344 >gi|149194715|ref|ZP_01871810.1| hypothetical protein CMTB2_05022 [Caminibacter mediatlanticus TB-2] gi|149135138|gb|EDM23619.1| hypothetical protein CMTB2_05022 [Caminibacter mediatlanticus TB-2] Length = 355 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 136/367 (37%), Positives = 213/367 (58%), Gaps = 35/367 (9%) Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76 L E LL++GI + R Q++ W+Y + + DF+ MS++ +++R L + F I E++ Sbjct: 8 LPEELLELGI---QPKFRVKQLYNWVYRKYVDDFEKMSNLPKDLREKLKKEFYINPLELI 64 Query: 77 DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----------RGTLCVSSQVGCS 125 + +I+ DGT K+L + IETV I K + T+CVS+QVGC Sbjct: 65 NHEIASDGTEKFLFKLNDN-----HTIETVLIKMKDDRVENGKKKEAKYTVCVSTQVGCK 119 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC T VRNL+A EI+ QV + K N+V M Sbjct: 120 VGCAFCLTAKGGFVRNLSAGEIVAQVWFMKKFKNFD--------------ENKALNVVFM 165 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 GMGEPL N++N+ K++ I + + GL+ + RR T+STSG P I ++GEE +GV LAISLH Sbjct: 166 GMGEPLDNYNNLVKAIKIIAHTDGLNIAPRRQTVSTSGIAPKIKKLGEENLGVNLAISLH 225 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV + LR L+P+N+ Y ++ +I+A R +P + +++ FEY+++K +ND+ A L+K Sbjct: 226 AVDDKLREQLIPLNKAYNIQSVIEAIREFP-IDKRKKVMFEYLVIKDVNDNLDSAKKLVK 284 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L GIP+K+NLI FNP+PG + D++ + F + G + IR +G+DI AACGQ Sbjct: 285 LLNGIPSKVNLIYFNPYPGSPFKRPDEETMKKFQRYLLDRGITCTIRQSKGIDISAACGQ 344 Query: 365 LKSLSKR 371 L+ + Sbjct: 345 LREKELK 351 >gi|323490277|ref|ZP_08095492.1| ribosomal RNA large subunit methyltransferase N [Planococcus donghaensis MPA1U2] gi|323395947|gb|EGA88778.1| ribosomal RNA large subunit methyltransferase N [Planococcus donghaensis MPA1U2] Length = 357 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 129/375 (34%), Positives = 210/375 (56%), Gaps = 26/375 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ G+ ++L+E L+ G + R Q+W W+Y++ + +F M+++S+E LL Sbjct: 2 KNSIYGLTIDQLKEWFLENG----QKKYRAEQVWDWLYIKRVTEFAEMNNLSKECIQLLE 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +F+I + ++ S DGT K+L + + IETV + K ++CV++QVGC+ Sbjct: 58 DNFAIRTLKETVKQESADGTIKFLFQMQDGNL-----IETVLMRFKYGNSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + CSFC +G K R+L A EI+ Q++ ++ ++S+IV+M Sbjct: 113 IGCSFCASGLLKKSRDLNAGEIVEQIMQVQAHFD------------TQQKEERVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+ N+ L + + GL+ R IT+STSG VP I +E + V LAIS+H Sbjct: 161 GIGEPFDNYTNLMDFLKVVNSQKGLAIGARHITVSTSGIVPKIYDYADEGLQVNLAISIH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR ++ IN+ YP+E L+ + +Y SN RITFEY++L+ +ND +A L K Sbjct: 221 APTNELRTRIMKINKAYPIEKLMASIDYYLEKSNR-RITFEYILLRDVNDHVEEANQLAK 279 Query: 305 IL--KGIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +L K + +NLIP+N + Y S + I F + +K+ G + +R +G DI AA Sbjct: 280 LLEDKRHLSYVNLIPYNSVDEHDQYQQSTPEAISAFYDALKKKGINCGVRHEQGADIDAA 339 Query: 362 CGQLKSLSKRIPKVP 376 CGQL+S + K Sbjct: 340 CGQLRSKQIKKDKKE 354 >gi|118578868|ref|YP_900118.1| ribosomal RNA large subunit methyltransferase N [Pelobacter propionicus DSM 2379] gi|205829797|sp|A1AL40|RLMN_PELPD RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|118501578|gb|ABK98060.1| 23S rRNA m(2)A-2503 methyltransferase [Pelobacter propionicus DSM 2379] Length = 347 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 150/367 (40%), Positives = 210/367 (57%), Gaps = 30/367 (8%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 +K L + LE+ L G R R +Q++KWIY R FQ M++IS+++R Sbjct: 1 MTEKTDLKNLTLPALEQFLRGQG----KERFRATQVFKWIYQHDARSFQEMTNISKDLRA 56 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L I E ++ DGTRK+L +E+V IP++ R TLC+SSQV Sbjct: 57 ELEAKAYISNLEPEAVEVGGDGTRKYLFGLED-----GNSVESVLIPDEGRNTLCISSQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC++ C+FC TGT +L RNLT EI+ Q++ R +I NI Sbjct: 112 GCAMGCAFCLTGTFRLTRNLTTAEIVNQIMAVRR-------------------DVEIRNI 152 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAI 241 VMMGMGEPL N DNV ++ I D GL S RR+T+ST G P + R+G E+ V LA+ Sbjct: 153 VMMGMGEPLHNLDNVIPAIHIMIDGNGLQLSNRRVTVSTCGLAPEMERLGRELPNVNLAV 212 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SL+A +++LR+ ++PINR+YPL+ L+ ACR +P L R++TFEYVML G+ND+ DA Sbjct: 213 SLNATTDELRDRIMPINRRYPLKELLSACREFP-LPGRRKVTFEYVMLGGLNDTLEDAKR 271 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L+++ IP K+NLIPFN + GCE+ + I F + + + R RG DI AA Sbjct: 272 LLRLTSDIPNKVNLIPFNEFQGCEFRSPTRAAIDAFHKYLIDRHVTVITRDSRGSDISAA 331 Query: 362 CGQLKSL 368 CGQLK Sbjct: 332 CGQLKGK 338 >gi|325261901|ref|ZP_08128639.1| radical SAM enzyme, Cfr family [Clostridium sp. D5] gi|324033355|gb|EGB94632.1| radical SAM enzyme, Cfr family [Clostridium sp. D5] Length = 345 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 118/365 (32%), Positives = 200/365 (54%), Gaps = 29/365 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ + E+L+ + IG + R Q+++W++V+ F M+++S+E+R L+ Sbjct: 2 KKDIRAYTYEQLQAEMAAIG----EKKFRAKQLYEWLHVKLAGSFDEMTNLSRELREKLD 57 Query: 66 QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + + I+ +++ + S DGT K+L + + +E+V + K ++C+SSQVGC Sbjct: 58 REYEILPVRMLERQESQMDGTNKFLFMLHDQNV-----VESVLMRYKHGNSVCISSQVGC 112 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC + LVRNL+ E+L Q+ + + G+ ++SN+V+ Sbjct: 113 RMGCRFCASTIGGLVRNLSPSEMLGQIYEIQKVTGE-----------------RVSNVVI 155 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG GEPL N++N + + +D GL S+R +T+ST G VP + + EE + + LA+SL Sbjct: 156 MGTGEPLDNYENFLCFIRLLTDEHGLHISQRNVTVSTCGIVPKMLELAEENLQITLALSL 215 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H + + R L+P+ KY L ++ AC Y + RITFEY ++ G+ND+ DA LI Sbjct: 216 HGTTQEKRKELMPVANKYELSDVLHACDEYFRKTGR-RITFEYSLVHGVNDTDEDAGELI 274 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +ILK +NLIP NP ++ +K+ + F +++SG + IR G DI ACG Sbjct: 275 RILKPRNCHLNLIPVNPVKERSFVRPSRKNALNFKNKLEKSGINVTIRREMGADIDGACG 334 Query: 364 QLKSL 368 QL+ Sbjct: 335 QLRRR 339 >gi|197118042|ref|YP_002138469.1| ribosomal RNA large subunit methyltransferase N [Geobacter bemidjiensis Bem] gi|197087402|gb|ACH38673.1| 23S rRNA (2-methyl-A2503)-methyltransferase [Geobacter bemidjiensis Bem] Length = 351 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 139/374 (37%), Positives = 209/374 (55%), Gaps = 29/374 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K + + + LE + +G R R QI+KW+Y F+ M+++S+E R + Sbjct: 1 MQKTDIKNLTLQGLESYISGLG----KERFRAKQIFKWLYQMDAGSFEEMTNVSKEFRVM 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L + I + S DGTRK+L R +E+V IP++ R TLC+SSQVG Sbjct: 57 LGEIAQISNLTPEVVEASEDGTRKYLFRLSD-----GSAVESVLIPDEGRNTLCISSQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC TG+ L RNLT EI+ QV + + ++NIV Sbjct: 112 CAMGCAFCLTGSFGLSRNLTTAEIVNQVCAVKR-------------------DQPVNNIV 152 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MGMGEPL N V ++ I +D G FS R++T+STSG VP +A +G V LA+SL Sbjct: 153 FMGMGEPLANLKGVIPAVQILTDPDGFQFSTRKVTVSTSGLVPEMAELGRGCTVNLAVSL 212 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 +A ++++R+ ++P+NR YPL L+ AC+ +P S IT EYVM++ +NDS DA L+ Sbjct: 213 NATTDEVRSRIMPVNRTYPLAQLLAACKAFPLPSRRW-ITMEYVMIRDLNDSLEDAKRLV 271 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +++ IP+K+NLIPFN GC++ C Q+ I F + + + R+ RG DI AACG Sbjct: 272 RLISNIPSKVNLIPFNEHEGCDFKCPTQESIDRFHKYLLDKNVTVITRSSRGSDISAACG 331 Query: 364 QLKSLSKRIPKVPR 377 QLK + R Sbjct: 332 QLKGRLDQEDGERR 345 >gi|95929456|ref|ZP_01312199.1| conserved hypothetical protein [Desulfuromonas acetoxidans DSM 684] gi|95134572|gb|EAT16228.1| conserved hypothetical protein [Desulfuromonas acetoxidans DSM 684] Length = 342 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 155/369 (42%), Positives = 211/369 (57%), Gaps = 30/369 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K L +EL E L +G R R Q+ +WIY RG+ D M+D+S+ +R Sbjct: 1 MEKLDLKNFSPDELLEFLSGMG----KERFRCEQLLRWIYKRGVTDLDEMTDLSKTLRAE 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQV 122 L + I + + S DGTRK+L R IETV IP + R TLC+SSQV Sbjct: 57 LKEKSYISDWQPEVVETSADGTRKYLFRL-----DDGQSIETVRIPMDNDRSTLCISSQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC++ C FC TG+ +RNLTA EI+ QV I+NI Sbjct: 112 GCAMDCDFCVTGSFGFIRNLTAAEIVNQVCAVAKEG-------------------SINNI 152 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 V+MGMGEPL N DNV ++L I + G +S R++TLST G VP + +GE I V LA+S Sbjct: 153 VLMGMGEPLHNLDNVVRALKIFYAAAGFDYSSRKVTLSTCGLVPQMKELGERIVVNLAVS 212 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 L+A +N++R+ L+PINR+YPLE L+DACR +P S+ RITFEY++++ +NDS DA L Sbjct: 213 LNATTNEVRDKLMPINRRYPLEELMDACRRFPMASHR-RITFEYILIRDLNDSLADAKRL 271 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +K++ GI KINLIPFN G Y C DQ I F + + R +G DI AAC Sbjct: 272 VKLMHGIRGKINLIPFNEHEGSPYRCPDQATIEAFQTYLLNRDIVAIRRASKGQDISAAC 331 Query: 363 GQLKSLSKR 371 GQLK ++ Sbjct: 332 GQLKGKLEK 340 >gi|75376338|sp|Q6XK03|RLMN_SPICI RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|34396189|gb|AAP55653.1| unknown [Spiroplasma citri] gi|110005241|emb|CAK99567.1| conserved hypothetical upf0063 transmembrane protein [Spiroplasma citri] Length = 345 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 135/370 (36%), Positives = 216/370 (58%), Gaps = 27/370 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 S+ G +EEL+ L+ G + QI+ WIYV+ I F M++IS+ R+ L + Sbjct: 2 TSIFGYPKEELQLDLVAHGF----KKYLAEQIFDWIYVKNIYSFDEMTNISKTDRNKLQE 57 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 +++I +IV ++ S D T K+L + +IETV +P+ ++CV++QVGC++ Sbjct: 58 YYTIEPLKIVVQQQSKDWTVKFLFQL-----ADGYKIETVLMPQSYGNSVCVTTQVGCNM 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC +G K RNL+ EI+ QV++ + + ++S+IV+MG Sbjct: 113 ACTFCASGLLKKTRNLSTAEIVQQVMMVNRY--------------LATTNERVSHIVVMG 158 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245 +GEP NFDN K ++I +D G R IT+ST G VP I + E + V LAISLHA Sbjct: 159 IGEPFDNFDNTLKFVNIINDPKGYQIGARHITISTCGLVPKIKQFAELKTQVNLAISLHA 218 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +N +RN L+PIN+ YP+E L+DA R+Y L+N R+TFEY++++ +NDS AL L K+ Sbjct: 219 PNNTIRNQLMPINKAYPVEKLMDAVRYYIELTNR-RVTFEYILIENVNDSRETALELAKL 277 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 ++G+ A +NLIP+N + S + I F E +++ + +R G DI AACGQL Sbjct: 278 IRGLNAYVNLIPYNTVAENGHQRSTK--INKFFETLQQQKINCIVRREFGHDIDAACGQL 335 Query: 366 KSLSKRIPKV 375 ++ ++ + + Sbjct: 336 RAKNEGVIRK 345 >gi|291526151|emb|CBK91738.1| 23S rRNA m(2)A-2503 methyltransferase [Eubacterium rectale DSM 17629] Length = 341 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 117/365 (32%), Positives = 202/365 (55%), Gaps = 29/365 (7%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 M +EL E ++ +G + R QI++WI+V+ + F M++IS++ +L + +I Sbjct: 1 MNMDELTEFIISLG----EKKFRAKQIYEWIHVKHVESFDEMTNISKKFIQVLKDNAILI 56 Query: 72 YPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130 + + ++S DGTRK+L + IE+V + K ++C+SSQVGC + C F Sbjct: 57 SLKKEEVQVSKLDGTRKYLFALDDGNV-----IESVLMKYKHGNSVCISSQVGCRMGCRF 111 Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 C + LVR L E++ Q+ +G+ +ISN+V+MG GEP Sbjct: 112 CASTLDGLVRGLRPSEMIDQIYQIGKDIGE-----------------RISNVVVMGTGEP 154 Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSND 249 L N+DN+ + + + +D G++ S+R +T+ST G VP + ++ +E + + LA+SLHA + + Sbjct: 155 LDNYDNLLRFIELLTDENGINISQRNLTVSTCGLVPRMRQLADEKLSITLALSLHASNQE 214 Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309 R L+P+ Y + ++DAC++Y + R+TFEY ++ G+ND+ DA L ++ G+ Sbjct: 215 KRKALMPVANSYDIHDVVDACKYYFAQTGR-RVTFEYSLVGGVNDTAEDAAELSALVHGM 273 Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369 INLIP NP +Y+ S++ I F ++++G + IR G DI ACGQL+ Sbjct: 274 NCHINLIPVNPIKERDYVQSNKGVIEAFKNRLEKNGINVTIRREMGRDIDGACGQLRKKH 333 Query: 370 KRIPK 374 + Sbjct: 334 IDKER 338 >gi|56962424|ref|YP_174150.1| hypothetical protein ABC0650 [Bacillus clausii KSM-K16] gi|81601050|sp|Q5WKB6|RLMN_BACSK RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|56908662|dbj|BAD63189.1| conserved hypothetical protein [Bacillus clausii KSM-K16] Length = 356 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 125/374 (33%), Positives = 211/374 (56%), Gaps = 26/374 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + KES+ G+ +L + L++ G H + R +Q+W W+Y + + F M++++++ L Sbjct: 1 MSKESIYGLTMAQLTDWLMERG----HKKFRATQVWDWLYRKRVTTFAEMTNVNKDCLQL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L HF+I + S DGT K+L R + IETV + K ++CV++QVG Sbjct: 57 LEDHFAIETMSEHVRQESKDGTIKFLFRLQDGNL-----IETVLMRHKYGFSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ CSFC +G R+L++ EI+ Q++ + L E ++S++V Sbjct: 112 CNIGCSFCASGLLTKNRDLSSGEIVEQIMKVQFHLDQVGKEE------------RVSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242 +MG+GEP NF N L I D GL+ R IT+STSG I + ++ V LA+S Sbjct: 160 VMGIGEPFDNFQNTVDFLEIIKDHKGLAIGARHITVSTSGLAHKIYEFADLKLQVNLAVS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ ++ IN+ +P+E L+D+ +Y +N R+T+EY+++K +ND +AL L Sbjct: 220 LHAPNNELRSRIMKINKAFPIEKLMDSINYYIEKTNR-RVTYEYILIKDVNDHKEEALQL 278 Query: 303 IKIL--KGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 +++ K + +NLIP+NP +Y S+ + I F + +K+ G + +R G DI Sbjct: 279 AELIGDKRHLSYVNLIPYNPVDEHSQYQRSEPEAISQFFDTLKKKGINCGVRLEHGTDID 338 Query: 360 AACGQLKSLSKRIP 373 AACGQL+S ++ Sbjct: 339 AACGQLRSKQEKKK 352 >gi|315651136|ref|ZP_07904168.1| cfr family radical SAM enzyme [Eubacterium saburreum DSM 3986] gi|315486601|gb|EFU76951.1| cfr family radical SAM enzyme [Eubacterium saburreum DSM 3986] Length = 352 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 124/364 (34%), Positives = 203/364 (55%), Gaps = 29/364 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + M EEL+ + IG P R Q+++W++ I F +++S+ R +L Sbjct: 3 TDIKSMDFEELKTFVKDIGEPA----FRAKQLFEWMHKLLIESFDECTNLSKAFREILKS 58 Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + ++V+ S D TRK+L I IE+V + + ++C+SSQVGC Sbjct: 59 QVILTRLKMVEVFTSKIDDTRKYLFALSDGNI-----IESVRMKYEHGNSVCISSQVGCR 113 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC + LVRNLT E+L QV + +LG+ ++SNIV+M Sbjct: 114 MGCKFCASTLDGLVRNLTTAEMLDQVYSIQRILGE-----------------RVSNIVVM 156 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G GEPL N+DN+ K + I S MGL+ S+R IT+ST G VP I ++ +E + + LA+SLH Sbjct: 157 GSGEPLDNYDNIVKFVRIISSDMGLNISQRNITVSTCGIVPKIKKLADEGLNITLALSLH 216 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++++R ++P+ KY L+ +I AC +Y + R+++EY ++ G+ND+ +A +L++ Sbjct: 217 APNDEIRKTIMPVANKYALKDIIAACDYYFKKTGR-RVSYEYSLVAGVNDNMEEAKSLVR 275 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 ++ G INLIP NP ++ SD+ I F + +++ G ++ IR G DI ACGQ Sbjct: 276 LVNGRNIHINLIPVNPIKERDFKQSDKLKIKAFRDFLEKKGVNATIRREMGRDIDGACGQ 335 Query: 365 LKSL 368 L+ Sbjct: 336 LRRR 339 >gi|299821377|ref|ZP_07053265.1| cfr family radical SAM enzyme [Listeria grayi DSM 20601] gi|299817042|gb|EFI84278.1| cfr family radical SAM enzyme [Listeria grayi DSM 20601] Length = 367 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 132/386 (34%), Positives = 218/386 (56%), Gaps = 29/386 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K S+ G+ E+L + L++ + R QIW W+Y + +R F M+++ +E L Sbjct: 1 MSKSSIYGITLEKLTDWLVE----RDQKGFRAKQIWDWLYRKRVRSFAEMTNVPKETLAL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L + F + E + S DGT K+L + + IETV + +K ++CV++QVG Sbjct: 57 LEESFVMETLEKEIIQESKDGTTKYLFKLQDGNL-----IETVLMKQKYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+L+A EI+ Q++ + L D ++S+IV Sbjct: 112 CNIGCTFCASGILKKSRDLSAGEIVEQIMNVQYYLDD------------RGSDERVSHIV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N++N+ L + + GL+ R IT+STSG P I +E + V LAIS Sbjct: 160 VMGIGEPFDNYENLMNFLHVVNSDSGLAIGARHITVSTSGLAPKIKEFADEDLQVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR ++ INR + +E L++A +Y +N R+TFEY+MLK +ND ++A L Sbjct: 220 LHAPNNELRTQIMRINRTFSIETLMEAIEYYIEKTNR-RVTFEYIMLKDVNDHVKEAEEL 278 Query: 303 IKILK--GIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++++ A +N+IP+NP +Y S ++ I F +K++G + +R G DI Sbjct: 279 AQLIRPYSQLAYVNMIPYNPVAEHIDYERSTEESINAFYHVLKKNGINCVVRREHGTDID 338 Query: 360 AACGQLKSLSKRIPKVP-RQEMQITG 384 AACGQL+ SK+I +V R+ M+ Sbjct: 339 AACGQLR--SKQIKRVGIRERMRRAA 362 >gi|77164417|ref|YP_342942.1| hypothetical protein Noc_0900 [Nitrosococcus oceani ATCC 19707] gi|254434279|ref|ZP_05047787.1| radical SAM enzyme, Cfr family [Nitrosococcus oceani AFC27] gi|123744359|sp|Q3JCN4|RLMN_NITOC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|76882731|gb|ABA57412.1| 23S rRNA m(2)A-2503 methyltransferase [Nitrosococcus oceani ATCC 19707] gi|207090612|gb|EDZ67883.1| radical SAM enzyme, Cfr family [Nitrosococcus oceani AFC27] Length = 372 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 162/377 (42%), Positives = 219/377 (58%), Gaps = 20/377 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + +L+ + R L+ +G R Q+ +WI+ R + DF M+D+++ +R L Sbjct: 5 RTNLLNLDRAGLDAFFTCLG----EKPFRARQVLRWIHQRFVTDFSAMTDLNKSLRERLT 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I PEI+ + S DGT KWLLR G IETV+IPE RGTLC+SSQ+GC Sbjct: 61 ESAVISLPEIIKQHRSADGTHKWLLRMH-----GNNCIETVFIPEGDRGTLCISSQIGCI 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q RNL EI+ Q+ LA LG P E R I+N+VMM Sbjct: 116 LDCSFCATGKQGFNRNLAVSEIIGQLWLANKTLGRDPKGE-----------RIITNVVMM 164 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NF+NV ++++ D S RR+TLST+G VP + R+ V LA+SLHA Sbjct: 165 GMGEPLANFNNVVTAMNLMLDDFSYGLSWRRVTLSTAGMVPAMDRLRAVCPVNLAVSLHA 224 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ LR+ LVP+N+KYPL+ L+ ACR Y R +TFEYVML G+NDS A L+++ Sbjct: 225 PTDKLRDELVPLNKKYPLQDLLSACRRYVAGDRRRAVTFEYVMLAGVNDSLPHARALLRL 284 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G+PAK+NLIPFNP+ G Y SD I F E + R G + R RG DI AACGQL Sbjct: 285 LRGLPAKVNLIPFNPFSGSVYRRSDAATIDRFREELLRGGIMTVTRKTRGDDIAAACGQL 344 Query: 366 KSLSKRIPKVPRQEMQI 382 + + ++ Sbjct: 345 AGRVQDRTRRTMDRQRL 361 >gi|319937496|ref|ZP_08011901.1| ribosomal RNA large subunit methyltransferase N [Coprobacillus sp. 29_1] gi|319807336|gb|EFW03945.1| ribosomal RNA large subunit methyltransferase N [Coprobacillus sp. 29_1] Length = 342 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 125/364 (34%), Positives = 198/364 (54%), Gaps = 28/364 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +S+ +E+L + L++G + R +Q+++W+Y++ + F M++ISQ +R L+ Sbjct: 2 KSIYDYTQEQLIDEFLELG----EKKFRATQVFEWLYLKNVNSFHEMNNISQGLRQKLSA 57 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 +SI +I +++S DGT K+L + IE V + +LC++SQ+GC++ Sbjct: 58 LYSIGPLQINVKQVSKDGTIKYLFELEDGGL-----IEAVLMVHDYGRSLCITSQLGCNM 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC +G K RNLTA E++ QVL G+ ++S++V+MG Sbjct: 113 ACEFCASGLLKKQRNLTAGEMVNQVLTVMHDTGE-----------------RVSHVVVMG 155 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 GEP N+DN+ + I + GL+ R IT+ST G I E I LAISLHA Sbjct: 156 TGEPFDNYDNMMNFIHIINHPKGLAIGARHITISTCGLCDKIEMYAHEGIQSNLAISLHA 215 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++RN L+PIN+KYP++ L + +Y +N R+T EY++LKG+ND A L Sbjct: 216 PNDEIRNQLMPINKKYPMDKLRETLAYYIQKTNR-RVTLEYILLKGVNDDITHARQLAHY 274 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +KG+ A +NLIP+N Y S QKD+ F + R + R G DI ACGQL Sbjct: 275 VKGLNAYVNLIPYNAVDEHGYQQSLQKDVEAFKAELLRFHINVTQRKEHGRDIDGACGQL 334 Query: 366 KSLS 369 ++ Sbjct: 335 RAKK 338 >gi|260437315|ref|ZP_05791131.1| radical SAM enzyme, Cfr family [Butyrivibrio crossotus DSM 2876] gi|292810227|gb|EFF69432.1| radical SAM enzyme, Cfr family [Butyrivibrio crossotus DSM 2876] Length = 349 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 119/367 (32%), Positives = 191/367 (52%), Gaps = 29/367 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++ + +EL E ++ +G P + R Q+++W++VR + + M++I ++ Sbjct: 1 MELTDIKSFDLDELTEYIVSLGEP----KFRAKQLYEWMHVRLVPGYDEMTNIPASLKAK 56 Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L ++ ++S DGT K+L R IE+V + ++C+SSQ Sbjct: 57 LKENTFYASLYPERVQVSKEDGTSKYLFRLYD-----GNYIESVLMHYHHGDSVCISSQA 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC + L RNL E+L Q+ +SL G ++SN+ Sbjct: 112 GCRMGCRFCASTLDGLARNLYPSEMLDQIYRIQSLTG-----------------NRVSNV 154 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 V+MG GEP NFDN K + +D GL+ S R +T+ST G VP I + + + + LAI Sbjct: 155 VVMGSGEPFDNFDNFIKFEKLLTDENGLNISARNLTVSTCGLVPRIYELADMRLQITLAI 214 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH+ ++++R L+P+ KY + ++DAC +Y + RITFEY ++KG ND AL Sbjct: 215 SLHSPTDEMRKKLMPVANKYSISEIMDACSYYIEKTGR-RITFEYSLVKGENDGSEHALI 273 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++KG+ INLIP NP +Y SD K I F + ++++ +R G DI A Sbjct: 274 LADLVKGMNCHINLIPVNPIKERDYRQSDTKSIKKFKDILEKNRIQVTVRREMGRDIDGA 333 Query: 362 CGQLKSL 368 CGQL+ Sbjct: 334 CGQLRKR 340 >gi|261409887|ref|YP_003246128.1| radical SAM enzyme, Cfr family [Paenibacillus sp. Y412MC10] gi|261286350|gb|ACX68321.1| radical SAM enzyme, Cfr family [Paenibacillus sp. Y412MC10] Length = 353 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 129/376 (34%), Positives = 212/376 (56%), Gaps = 28/376 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K S+ G+ ++L L + G H + R +Q+W+W+Y + + F M+D+ E L Sbjct: 1 MNKPSIYGLTLDQLTAWLGERG----HKKFRATQVWEWLYRKRVTSFSDMTDVHPECLQL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +H++I+ E ++ S DGT K+L + + IETV + K ++CV++QVG Sbjct: 57 LEEHYTILTLEEHTKQESLDGTVKFLFKLVDGNL-----IETVLMRHKFGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ CSFC +G K R+L+A EI+ QV+ + + ++S++V Sbjct: 112 CNIGCSFCASGLLKKSRDLSAAEIVEQVMQVQLH------------LDRRGSSERVSHLV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242 +MG+GEP N++N+ + + D GL+ R IT+STSG I + ++GV LAIS Sbjct: 160 VMGIGEPFDNYENMSDFIRVIKDHKGLAIGPRHITVSTSGLANKIVEFADSDLGVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA ++++R ++ IN+ P+E L+ A +Y +N RIT EY++LK +ND AL L Sbjct: 220 LHAPNDEIRTRIMKINKAIPIEKLMAAIDYYLEKTNR-RITLEYILLKDVNDQREHALEL 278 Query: 303 IKIL--KGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 +++ + A +NLIP+NP +Y S ++ I F + +K+ G S +R G DI Sbjct: 279 AELVGERRNLANVNLIPYNPVDEHSQYQRSTKESITAFYDTLKKQGISCSVRLEHGTDID 338 Query: 360 AACGQLKSLSKRIPKV 375 AACGQL+ SK+I K Sbjct: 339 AACGQLR--SKQIKKA 352 >gi|288554554|ref|YP_003426489.1| ribosomal RNA large subunit methyltransferase N [Bacillus pseudofirmus OF4] gi|288545714|gb|ADC49597.1| ribosomal RNA methyltransferase N, heat shock prot [Bacillus pseudofirmus OF4] Length = 360 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 128/367 (34%), Positives = 209/367 (56%), Gaps = 26/367 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + KES+ G+ ++L E L++ G H + R +Q+W W+Y + ++ F M++++++ L Sbjct: 1 MHKESIYGLTMDQLTEWLMERG----HKKFRATQVWDWLYRKRVKSFDEMNNVNKDCLEL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L ++F I ++ S DGT K+L + + IETV + K ++CV++QVG Sbjct: 57 LRENFVISTLTEHVKQESSDGTIKFLFKLYDGNL-----IETVLMKHKYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ CSFC +G K R+L++ EI+ Q++ + L ++S+IV Sbjct: 112 CNIGCSFCASGLLKKSRDLSSGEIVEQIMNVQHHLDSV------------GKDERVSHIV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242 +MG+GEP NFDN+ L I D GL+ R IT+STSG I + ++ V LAIS Sbjct: 160 VMGIGEPFDNFDNMVDFLEIMKDHKGLAIGARHITVSTSGLADKIYEFADLKLQVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR ++ IN+ P+E L+ A +Y +N +IT EY++LKG+ND A L Sbjct: 220 LHAPNNELRTKIMKINKAIPIEKLMKAIDYYLEKTNR-KITIEYILLKGVNDQREHAKEL 278 Query: 303 IKILKGIPA--KINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++ K +NLIP+NP +Y S ++DI+ F + +K++G + +R G DI Sbjct: 279 AEMFKDKRHLTYVNLIPYNPVDEHGQYQRSIKEDILGFYDELKKNGINCGVRLEHGTDID 338 Query: 360 AACGQLK 366 AACGQL+ Sbjct: 339 AACGQLR 345 >gi|116511012|ref|YP_808228.1| hypothetical protein LACR_0188 [Lactococcus lactis subsp. cremoris SK11] gi|123025653|sp|Q032R6|RLMN_LACLS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|116106666|gb|ABJ71806.1| 23S rRNA m(2)A-2503 methyltransferase [Lactococcus lactis subsp. cremoris SK11] Length = 365 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 129/381 (33%), Positives = 212/381 (55%), Gaps = 27/381 (7%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 + + S+ G+ R++L E ++ G + R +Q+W W+Y + ++ F+ MS++S Sbjct: 5 ITTETRPSIYGLTRDQLIEWAIENG----EKKFRATQVWDWLYRKRVQSFEEMSNLSAVF 60 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 LN+ F + E V + S DGT K+L P + V IETV + + ++CV++ Sbjct: 61 IDKLNEAFILNPLEQVVVQESADGTVKYLFMLPDK-----VMIETVLMRQSYGLSVCVTT 115 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC++ C+FC +G K R++TA EI+ Q++L + + + ++S Sbjct: 116 QVGCNMGCTFCASGILKKERDVTAGEIVSQIMLVQKYFDE------------RGLDERVS 163 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP-NIARVGEE-IGVM 238 ++V+MG+GEP N++++ L + +D GL+ R IT+ST GF+P I E + + Sbjct: 164 HVVVMGIGEPFDNYEHLMNFLRVINDDNGLAIGARHITVSTCGFMPAKIKEFAHENLQIN 223 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LAISLHA +N+LR L+ I R PLE L +A +Y +N R+T+EY+ML G NDSP Sbjct: 224 LAISLHAPNNELRTSLMRITRNAPLEKLFEAIDYYTETTNR-RVTYEYIMLSGENDSPEI 282 Query: 299 ALNLIKILK--GIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 A L ++K + +NLIP+NP +Y S + + F + +K++G + +R G Sbjct: 283 AQQLADLIKPRNKLSYVNLIPYNPVAEHIKYERSTKDNTAKFYDVLKKNGINCVVRQEHG 342 Query: 356 LDILAACGQLKSLSKRIPKVP 376 DI AACGQL+S + K Sbjct: 343 TDIDAACGQLRSKQIKKNKAK 363 >gi|163753003|ref|ZP_02160127.1| hypothetical protein KAOT1_12622 [Kordia algicida OT-1] gi|161326735|gb|EDP98060.1| hypothetical protein KAOT1_12622 [Kordia algicida OT-1] Length = 347 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 127/370 (34%), Positives = 205/370 (55%), Gaps = 24/370 (6%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M K+ + + +E+L + + G R +Q+++W++ +G F M++IS+E Sbjct: 1 MKQAVKKDIRALSKEQLRDFFVSEGDKA----FRGNQVYEWLWQKGAHSFDDMTNISKET 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R +L ++F I + + + S DGT K +R + +E+V IP +R T CVSS Sbjct: 57 RKMLEENFVINHIRVDKMQRSNDGTIKNAVRLHDGLV-----VESVLIPTSTRTTACVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGCSL C FC T K +RNL +EI QV+ + GR +S Sbjct: 112 QVGCSLDCKFCATARLKRMRNLNPDEIYDQVVAIDRESRLY-------------HGRPLS 158 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVML 239 NIV MGMGEPL N++NV K++ + GL S +RIT+STSG I ++ + E+ L Sbjct: 159 NIVFMGMGEPLMNYNNVLKAIEKITSEEGLGMSPKRITVSTSGVPKMIKKMADDEVKFKL 218 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH+ +++R ++P N +PL+ L +A ++ + +IT+EYV+ GIND +D Sbjct: 219 AVSLHSAIDEVRTEIMPFNEHFPLKDLKEALTYWYDKT-KNKITYEYVVWDGINDQQKDI 277 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L+K K +P+K+NLI +NP ++ + K I + + ++++G + +R RG DI Sbjct: 278 NALVKFCKDVPSKVNLIEYNPIDDGQFQQASNKAIDRYVDSLEQNGITVTVRRSRGKDID 337 Query: 360 AACGQLKSLS 369 AACGQL + Sbjct: 338 AACGQLANKE 347 >gi|116751471|ref|YP_848158.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|205829911|sp|A0LQM1|RLMN_SYNFM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|116700535|gb|ABK19723.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB] Length = 342 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 149/365 (40%), Positives = 215/365 (58%), Gaps = 25/365 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++ + ELEE + IG R Q+++ +Y RG+R + SD+S+ R Sbjct: 1 MEPVCVKDFTLPELEEWVQGIG----ERSFRARQLFRHVYGRGVRSWSECSDLSRMFRVQ 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L + ++ ++ + DGT K+L IE V IP+ R TLCVSSQVG Sbjct: 57 LEHGVELDALSVLKKEQADDGTSKYLFGLRD-----GHSIEAVLIPDLPRSTLCVSSQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L C FC TG+ RNL+A EI+ QV + LG +I+NIV Sbjct: 112 CALGCKFCLTGSLGFKRNLSAAEIVDQVCQVQRDLGSRS---------------RITNIV 156 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MGMGEPL N D+V +++ + ++ G++FS RRITLST+G VP + R+G E V LA+SL Sbjct: 157 FMGMGEPLANLDSVLRAIRVIAEPNGMAFSHRRITLSTAGLVPQLRRLGRESPVNLAVSL 216 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA N+LR L+P+NR YPLE+L+ ACR YP L +RITFEY++L GIND P+ A L+ Sbjct: 217 HAAENELRAELMPVNRTYPLEVLMAACREYP-LPPRKRITFEYILLDGINDDPKQAKQLV 275 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+L GI AK+NL+PFNP PG + ++ ++ F E ++ + ++ +R RG +I AACG Sbjct: 276 KLLHGIRAKVNLMPFNPHPGSVFRKPSEQRVLAFQEALQNARITTHVRRSRGGEIGAACG 335 Query: 364 QLKSL 368 QL + Sbjct: 336 QLVAE 340 >gi|125623071|ref|YP_001031554.1| hypothetical protein llmg_0194 [Lactococcus lactis subsp. cremoris MG1363] gi|205829781|sp|A2RHR3|RLMN_LACLM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|124491879|emb|CAL96800.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris MG1363] gi|300069818|gb|ADJ59218.1| ribosomal RNA large subunit methyltransferase N [Lactococcus lactis subsp. cremoris NZ9000] Length = 365 Score = 408 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 128/381 (33%), Positives = 212/381 (55%), Gaps = 27/381 (7%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 + + S+ G+ R++L E ++ G + R +Q+W W+Y + ++ F+ MS++S Sbjct: 5 ITTETRPSIYGLTRDQLIEWAIENG----EKKFRATQVWDWLYRKRVQSFEEMSNLSAVF 60 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 LN+ F + E V + S DGT K+L P + V IETV + + ++CV++ Sbjct: 61 IDKLNEAFILNPLEQVVVQESADGTVKYLFMLPDK-----VMIETVLMRQSYGLSVCVTT 115 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC++ C+FC +G K R++TA EI+ Q++L + + + ++S Sbjct: 116 QVGCNMGCTFCASGILKKERDVTAGEIVSQIMLVQKYFDE------------RGLDERVS 163 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP-NIARVGEE-IGVM 238 ++V+MG+GEP N++++ L + +D GL+ R IT+ST GF+P I + + + Sbjct: 164 HVVVMGIGEPFDNYEHLMNFLRVINDDNGLAIGARHITVSTCGFMPAKIKEFAHDNLQIN 223 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LAISLHA +N+LR L+ I R PLE L +A +Y +N R+T+EY+ML G NDSP Sbjct: 224 LAISLHAPNNELRTSLMRITRNAPLEKLFEAIDYYTETTNR-RVTYEYIMLSGENDSPEI 282 Query: 299 ALNLIKILKGIP--AKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 A L ++K + +NLIP+NP +Y S + + F + +K++G + +R G Sbjct: 283 AQQLADLIKSRNKLSYVNLIPYNPVAEHIKYERSTKDNTAKFYDVLKKNGINCVVRQEHG 342 Query: 356 LDILAACGQLKSLSKRIPKVP 376 DI AACGQL+S + K Sbjct: 343 TDIDAACGQLRSKQIKKNKAK 363 >gi|218666070|ref|YP_002426339.1| radical SAM enzyme, Cfr family [Acidithiobacillus ferrooxidans ATCC 23270] gi|218518283|gb|ACK78869.1| radical SAM enzyme, Cfr family [Acidithiobacillus ferrooxidans ATCC 23270] Length = 362 Score = 408 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 167/371 (45%), Positives = 218/371 (58%), Gaps = 26/371 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 ++ L+G+ R+ L + L G R +QI +W++ R + DF M+DIS+ +R L Sbjct: 11 ERPHLLGLGRQSLAKLLRTWG----ESPFRANQILQWLHTRQVTDFAAMTDISKTLRARL 66 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PEI+ ++ + D TRKWLLR P IETV+IP + RGTLC+SSQVGC Sbjct: 67 AAETRIDMPEIIADQTAADCTRKWLLRLPD-----GNAIETVFIPGEDRGTLCISSQVGC 121 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 SL CSFC TG Q L RNL EI+ QV +AR LG I+NIV Sbjct: 122 SLACSFCATGAQGLSRNLETHEIIAQVRVARDFLGLDA----------------ITNIVF 165 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEP+ N V +L + D F RRIT+ST+G VP + R+G E V LAISLH Sbjct: 166 MGMGEPMLNLREVLPALDLLRDDYAYGFGARRITVSTAGVVPGMDRLGAESPVNLAISLH 225 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +++R+ILVP+NR YPL L+ ACR L RRITFEYVML+G+ND+ A L++ Sbjct: 226 ASRDEIRDILVPVNRHYPLAELLAACRR-YPLPPRRRITFEYVMLEGVNDADSHARELLR 284 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L+ IPA +NLIPFNP+PG +Y S Q I F + I R + R PRG DI AACGQ Sbjct: 285 LLRDIPAMVNLIPFNPFPGSDYKRSPQVRIDAFRDIILRGNVMTVTRRPRGDDIAAACGQ 344 Query: 365 LKSLSKRIPKV 375 L + + Sbjct: 345 LAGQVRAGRRS 355 >gi|291534141|emb|CBL07254.1| 23S rRNA m(2)A-2503 methyltransferase [Megamonas hypermegale ART12/1] Length = 345 Score = 408 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 129/365 (35%), Positives = 201/365 (55%), Gaps = 26/365 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++ G+ EL + + +P + R QI +W+Y + F M+++S+++R L Q Sbjct: 2 TNIFGLNLTELTSLITDLNLP----KFRAKQIIEWLYQKHATSFDEMTNLSKDLREKLAQ 57 Query: 67 HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F+I + D S DG T K+LL F G + +ETV + + ++CVSSQ GC+ Sbjct: 58 EFTIERAKSCDRLDSSDGKTTKFLLEF-----GDGIGVETVLMRQPYGNSICVSSQAGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + CSFC + + RNL+ EIL Q + + LL G +I+NIV+M Sbjct: 113 MGCSFCASTLHGMARNLSTGEILAQAMFIQELLNQ--------------TGEQINNIVIM 158 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G GEP+ N+DNV + + + L+ R IT+STSG VP I ++ +E + + L+ISLH Sbjct: 159 GSGEPMLNYDNVLNFIRLVHEPYCLNLGYRNITISTSGIVPGINKLAQENLPITLSISLH 218 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N LR L+PIN++YP+E +I A +Y + RRIT+EY+++ ND+ +A+ L K Sbjct: 219 APNNVLRTELMPINKRYPIEEVIKAAVNYAN-TTKRRITYEYILIDKYNDNMTEAVELCK 277 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LK A +NLIP NP Y I F++ + ++ IR G DI AACGQ Sbjct: 278 LLKNQLANVNLIPINPVKERNYNRPSLARIKAFAKYLNDHHLTATIRQEMGTDIQAACGQ 337 Query: 365 LKSLS 369 L++ Sbjct: 338 LRNKH 342 >gi|198283710|ref|YP_002220031.1| radical SAM enzyme, Cfr family [Acidithiobacillus ferrooxidans ATCC 53993] gi|198248231|gb|ACH83824.1| radical SAM enzyme, Cfr family [Acidithiobacillus ferrooxidans ATCC 53993] Length = 363 Score = 408 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 167/371 (45%), Positives = 218/371 (58%), Gaps = 26/371 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 ++ L+G+ R+ L + L G R +QI +W++ R + DF M+DIS+ +R L Sbjct: 12 ERPHLLGLGRQSLAKLLRTWG----ESPFRANQILQWLHTRQVTDFAAMTDISKTLRARL 67 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PEI+ ++ + D TRKWLLR P IETV+IP + RGTLC+SSQVGC Sbjct: 68 AAETRIDMPEIIADQTAADCTRKWLLRLPD-----GNAIETVFIPGEDRGTLCISSQVGC 122 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 SL CSFC TG Q L RNL EI+ QV +AR LG I+NIV Sbjct: 123 SLACSFCATGAQGLSRNLETHEIIAQVRVARDFLGLDA----------------ITNIVF 166 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEP+ N V +L + D F RRIT+ST+G VP + R+G E V LAISLH Sbjct: 167 MGMGEPMLNLREVLPALDLLRDDYAYGFGARRITVSTAGVVPGMDRLGAESPVNLAISLH 226 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +++R+ILVP+NR YPL L+ ACR L RRITFEYVML+G+ND+ A L++ Sbjct: 227 ASRDEIRDILVPVNRHYPLAELLAACRR-YPLPPRRRITFEYVMLEGVNDADSHARELLR 285 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L+ IPA +NLIPFNP+PG +Y S Q I F + I R + R PRG DI AACGQ Sbjct: 286 LLRDIPAMVNLIPFNPFPGSDYKRSPQVRIDAFRDIILRGNVMTVTRRPRGDDIAAACGQ 345 Query: 365 LKSLSKRIPKV 375 L + + Sbjct: 346 LAGQVRAGRRS 356 >gi|221632343|ref|YP_002521564.1| radical SAM enzyme, Cfr family [Thermomicrobium roseum DSM 5159] gi|221156232|gb|ACM05359.1| radical SAM enzyme, Cfr family [Thermomicrobium roseum DSM 5159] Length = 379 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 137/370 (37%), Positives = 209/370 (56%), Gaps = 27/370 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +++E+L ELE + G+P R R Q++ W Y + + +++ MS + + VR Sbjct: 24 VQRETLHDYTLGELEAWVEGRGLP----RYRARQLFHWAYQQLVLEYESMSVLPKAVRSE 79 Query: 64 LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L++ I V +++S D T K L R +ETV + R T+CVS Q+ Sbjct: 80 LSETLPISGLVPVRQRVSDDRETIKLLFRTRDDHF-----VETVVMFYPDRTTVCVSCQI 134 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC++ CSFC TG L+RNL+A E++ QV+ + R+ISNI Sbjct: 135 GCAIGCSFCATGLSGLIRNLSAGEMVSQVVH--------------AARLARERERRISNI 180 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241 V+MGMGEP N+D V + ++I +D GL R ITLST+G VP I R+ EE V LA+ Sbjct: 181 VVMGMGEPFHNYDAVMRFVAIVNDRQGLGIGARHITLSTAGVVPFIDRLAEEPYQVKLAV 240 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++ LR+ LVPINR++P++ L+ ACR Y + R+TFEYV+++ +ND R A Sbjct: 241 SLHAPNDALRSQLVPINRRWPIDELLAACRRYVARTGR-RVTFEYVLIEDVNDDERTAAE 299 Query: 302 LIKILKGIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L + L+G+ +NLIP+NP P + + I F ++R G + +R RG++I A Sbjct: 300 LARRLRGLLCHVNLIPYNPTPAAPLFRRPGPERIERFRAVLERYGIPATVRYSRGVEIAA 359 Query: 361 ACGQLKSLSK 370 ACGQL++ + Sbjct: 360 ACGQLRAQEE 369 >gi|293365659|ref|ZP_06612368.1| cfr family radical SAM enzyme [Streptococcus oralis ATCC 35037] gi|291316027|gb|EFE56471.1| cfr family radical SAM enzyme [Streptococcus oralis ATCC 35037] Length = 349 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 121/362 (33%), Positives = 204/362 (56%), Gaps = 26/362 (7%) Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76 ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN F + + Sbjct: 1 MQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLKQR 56 Query: 77 DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136 + S DGT K+L P + IETV + + ++CV++QVGC++ C+FC +G Sbjct: 57 IVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCNIGCTFCASGLI 111 Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196 K R+L EI+ Q++L + + ++S+IV+MG+GEP N++N Sbjct: 112 KKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVMGIGEPFDNYNN 159 Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILV 255 V + +D G++ R IT+STSG I E + V LA+SLHA +N+LR+ ++ Sbjct: 160 VLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNELRSSIM 219 Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKI 313 INR +P+E L A +Y +N R+TFEY+ML +ND AL L ++LK I + + Sbjct: 220 KINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAELLKNIKKLSYV 278 Query: 314 NLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRI 372 NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AACGQL+S + + Sbjct: 279 NLIPYNPVSEHDQYSRSPKERVMAFYDTLKKKGVNCVVRQEHGTDIDAACGQLRSNTMKR 338 Query: 373 PK 374 + Sbjct: 339 DR 340 >gi|169832893|ref|YP_001694228.1| ribosomal RNA large subunit methyltransferase N [Streptococcus pneumoniae Hungary19A-6] gi|205829906|sp|B1IAU3|RLMN_STRPI RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|168995395|gb|ACA36007.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae Hungary19A-6] Length = 361 Score = 408 bits (1048), Expect = e-112, Method: Composition-based stats. Identities = 121/373 (32%), Positives = 207/373 (55%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLTHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + ++S+IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N++NV +D G++ R IT+ST G I +E + V LA+SLH Sbjct: 161 GIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTLGLAHKIRDFADEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L + Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLI +NP + Y S ++ ++ F + +K+ G + +R G DI AA Sbjct: 280 LLKNIKKLSYVNLISYNPVSEHDQYSRSPKERVLAFYDTLKKKGGNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKRDR 352 >gi|302874751|ref|YP_003843384.1| radical SAM enzyme, Cfr family [Clostridium cellulovorans 743B] gi|307690634|ref|ZP_07633080.1| ribosomal RNA large subunit methyltransferase N [Clostridium cellulovorans 743B] gi|302577608|gb|ADL51620.1| radical SAM enzyme, Cfr family [Clostridium cellulovorans 743B] Length = 351 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 120/363 (33%), Positives = 192/363 (52%), Gaps = 32/363 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +++ +EL++ + G R Q++ WIY + + F M ++ + + L + Sbjct: 2 RNILDYSLKELKQWMEANG----ENAFRAKQVFDWIY-KAVASFDEMKNLPKNTKEKLKE 56 Query: 67 HFSIIYPEIVDEKIS--CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +F I PEI + S D T K+LL+ + IE VY+ ++C+S+Q+GC Sbjct: 57 YFFIGIPEITHKYDSINKD-TAKYLLKLSDGNV-----IEAVYMKYNYGNSVCLSTQIGC 110 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + CSFC + +R+LT+ +IL ++L + ++SNIV+ Sbjct: 111 RMGCSFCASTIGGRIRDLTSGDILGEILAMEFNEKE-----------------RVSNIVL 153 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243 MG GEP N++NV K L + + GL+ R ITLST G VP I R + + V LAISL Sbjct: 154 MGSGEPFDNYENVTKFLELVNSKDGLNIGARHITLSTCGLVPGIIRFADLKSQVTLAISL 213 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++LR ++PI KY ++ +++AC +Y +N RITFEY ++K +ND+ A L Sbjct: 214 HAPNDELRKTMMPIANKYSIKEILEACNYYIEKTNR-RITFEYSLVKDVNDTEDHARELS 272 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LKGI +NLIP N + K ++ F + + +G + IR G DI AACG Sbjct: 273 ALLKGILCHVNLIPVNVVKESGFSRPSDKAVMKFKKILDSNGIEATIRKEMGADINAACG 332 Query: 364 QLK 366 QL+ Sbjct: 333 QLR 335 >gi|224373787|ref|YP_002608159.1| ribosomal RNA large subunit methyltransferase N [Nautilia profundicola AmH] gi|259491991|sp|B9L721|RLMN_NAUPA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|223590036|gb|ACM93772.1| radical SAM enzyme, Cfr family [Nautilia profundicola AmH] Length = 354 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 136/378 (35%), Positives = 210/378 (55%), Gaps = 39/378 (10%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K+ + + EEL E + RT Q+++W+Y + + DF+ M +I ++++ Sbjct: 1 MDKKIFMDYLPEELMEF-------GIQPKFRTKQLYQWVYRKYVDDFEEMKNIPKDLKAK 53 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS----------- 112 L + F I E+++ +I+ DGT K+L + +ETV I K Sbjct: 54 LKKEFIINPLELINHEIATDGTEKFLFKMHDN-----HTVETVLIKMKDEEIKDGKIKEA 108 Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172 + T+CVS+QVGC + C+FC T VRNL+A EI+ QV + Sbjct: 109 KYTVCVSTQVGCKVGCAFCLTAKGGFVRNLSAGEIVAQVWWMKKFKNFD----------- 157 Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232 K N+V MGMGEPL N+D + K++ I ++ G++ S RR T+STSG P I R+G Sbjct: 158 ---ENKALNVVYMGMGEPLDNYDALVKAIKILANPDGMNISPRRQTVSTSGIAPKIKRLG 214 Query: 233 -EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291 E +GV LAISLHAV ++LR L+P+N+ Y +E +IDA R +P + +++ FEY+++K Sbjct: 215 NENLGVNLAISLHAVDDELREQLIPLNKAYNIESVIDAIREFP-IDKRKKVMFEYLVIKD 273 Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351 +ND A L+K+L GIP+K+NLI FNP+PG + D + F + + G IR Sbjct: 274 VNDDIESAKKLVKLLNGIPSKVNLIYFNPYPGTNFKRPDDATMKKFQDYLINKGIMCTIR 333 Query: 352 TPRGLDILAACGQLKSLS 369 +G+DI AACGQL+ Sbjct: 334 KSKGMDISAACGQLREKE 351 >gi|329926694|ref|ZP_08281104.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF5] gi|328939034|gb|EGG35400.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF5] Length = 353 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 129/376 (34%), Positives = 212/376 (56%), Gaps = 28/376 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K S+ G+ ++L L + G H + R +Q+W+W+Y + + F M+D+ E L Sbjct: 1 MNKPSIYGLTLDQLTAWLGERG----HKKFRATQVWEWLYRKRVTSFSDMTDVHPECLQL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +H++I+ E ++ S DGT K+L + + IETV + K ++CV++QVG Sbjct: 57 LEEHYTILTLEEHTKQESLDGTVKFLFKLVDGNL-----IETVLMRHKFGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ CSFC +G K R+L+A EI+ QV+ + + ++S++V Sbjct: 112 CNIGCSFCASGLLKKSRDLSAAEIVEQVMQVQLH------------LDRRGSSERVSHLV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242 +MG+GEP N++N+ + + D GL+ R IT+STSG I + ++GV LAIS Sbjct: 160 VMGIGEPFDNYENMSDFIRVIKDHKGLAIGPRHITVSTSGLANKIVEFADSDLGVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA ++++R ++ IN+ P+E L+ A +Y +N RIT EY++LK +ND AL L Sbjct: 220 LHAPNDEIRTRIMKINKAIPIEKLMAAIDYYLEKTNR-RITLEYILLKDVNDQREHALEL 278 Query: 303 IKIL--KGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 +++ + A +NLIP+NP +Y S ++ I F + +K+ G S +R G DI Sbjct: 279 AELVGERRNLANVNLIPYNPVDEHSQYQRSTKESITGFYDTLKKQGISCSVRLEHGTDID 338 Query: 360 AACGQLKSLSKRIPKV 375 AACGQL+ SK+I K Sbjct: 339 AACGQLR--SKQIKKA 352 >gi|213963853|ref|ZP_03392101.1| radical SAM enzyme, Cfr family [Capnocytophaga sputigena Capno] gi|213953533|gb|EEB64867.1| radical SAM enzyme, Cfr family [Capnocytophaga sputigena Capno] Length = 350 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 135/373 (36%), Positives = 206/373 (55%), Gaps = 24/373 (6%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 ++K + + +EEL G R +Q+++W++ +G+ F+ M+ + + R Sbjct: 1 MMQKRDIRALTKEELRTFFESNGDKA----FRGNQVYEWLWQKGVHTFEAMTSLPKATRE 56 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 +L +HFSI + ++ + S DGT K +R + +E+V IP +R T CVSSQV Sbjct: 57 MLAEHFSINHIKVDVMQRSNDGTIKNAVRLHDGLL-----VESVLIPTDTRTTACVSSQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GCSL CSFC T K +RNL +EI QV + I+ GR +SNI Sbjct: 112 GCSLNCSFCATARLKRMRNLLPDEIFDQV-------------KVIDEQSRAFFGRPLSNI 158 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241 V MGMGEPL N++NV K++ + GL S +RITLSTSG I ++ + E+ LA+ Sbjct: 159 VFMGMGEPLMNYNNVLKAIDKITSPEGLGMSPKRITLSTSGIPKLIKKMADDEVKFKLAV 218 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH+ +R ++P N ++PLE L DA ++ + RIT+EYV+ KGIND +D Sbjct: 219 SLHSAIGSVRTGIMPFNEQFPLEELRDALAYWYQKT-KNRITYEYVVWKGINDQKKDVEA 277 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 LIK K P+K+NLI +NP ++ +D K + + ++ +G + +R RG DI AA Sbjct: 278 LIKFCKFAPSKVNLIEYNPIDDGDFQQADPKALELYQTMLEAAGITVTVRHSRGKDIDAA 337 Query: 362 CGQLKSLSKRIPK 374 CGQL + + K Sbjct: 338 CGQLANKKVKSEK 350 >gi|168486739|ref|ZP_02711247.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae CDC1087-00] gi|168490855|ref|ZP_02714998.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae CDC0288-04] gi|183570290|gb|EDT90818.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae CDC1087-00] gi|183574611|gb|EDT95139.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae CDC0288-04] Length = 361 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 121/373 (32%), Positives = 208/373 (55%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + R+ ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLTRQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QV C+ Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVDCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + ++S+IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFAE------------RGQDERVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N++NV + +D G++ R IT+STS I +E + V LA+SLH Sbjct: 161 GIGEPFDNYNNVLNFVCTINDDKGMAIGARHITVSTSVLAHKIRNFADEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL + Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALEFAE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEYGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKRDR 352 >gi|325286898|ref|YP_004262688.1| Ribosomal RNA large subunit methyltransferase N [Cellulophaga lytica DSM 7489] gi|324322352|gb|ADY29817.1| Ribosomal RNA large subunit methyltransferase N [Cellulophaga lytica DSM 7489] Length = 347 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 132/370 (35%), Positives = 211/370 (57%), Gaps = 24/370 (6%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M KK+ + + +E++ + G R +Q+++W++ +G F+ M+++S+E Sbjct: 1 MEKNKKKDIRALTKEQIRAFFVAQGDKA----FRGNQVYEWLWQKGAHSFEAMTNVSKET 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R LL+ +F I + ++ + S DGT K ++ I +E+V IP K+R T CVSS Sbjct: 57 RQLLDDNFVINHIKVDQMQRSSDGTIKNAVQLHDGLI-----VESVLIPTKTRTTACVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGCSL C FC T K +RNL +EI QV+ I+ RK+S Sbjct: 112 QVGCSLDCRFCATSRLKRMRNLNPDEIYDQVVA-------------IDNESRLYFDRKLS 158 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVML 239 NIV MGMGEPL N++NV K++ + + GL+ S +RIT+STSG I ++ + E+ L Sbjct: 159 NIVFMGMGEPLMNYNNVLKAIDKITSTEGLAMSPKRITVSTSGVPKMIKKMADDEVKFKL 218 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH+ +++R ++P N +PL+ L +A +++ + RIT+EYV+ GIND+ DA Sbjct: 219 AVSLHSAVDEIRTSIMPFNATFPLKDLREALQYWYAKT-KSRITYEYVVWDGINDTQNDA 277 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L+ + P+K+NLI +NP E+ + K I + ++R+G + +R RG DI Sbjct: 278 NALVDFCRFAPSKVNLIEYNPIDDGEFQQASNKAIDMYVTTLERNGITVTVRRSRGKDID 337 Query: 360 AACGQLKSLS 369 AACGQL + S Sbjct: 338 AACGQLANKS 347 >gi|120434720|ref|YP_860407.1| radical SAM superfamily protein, UPF0063 [Gramella forsetii KT0803] gi|205829770|sp|A0LY94|RLMN_GRAFK RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|117576870|emb|CAL65339.1| radical SAM superfamily protein, UPF0063 [Gramella forsetii KT0803] Length = 352 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 128/366 (34%), Positives = 205/366 (56%), Gaps = 24/366 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K+ + + +E+L++ + G R +Q+++W++ + F M++IS+E R +L Sbjct: 9 RKKDIRALTKEQLQKFFVAEG----DKSFRGTQVYEWLWSKAAHSFDDMTNISKETRQML 64 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +F I + + + S DGT K ++ + +E+V IP KSR T CVSSQVGC Sbjct: 65 KDNFVINHIRVDRMQRSSDGTIKNAVKLHD-----ALTVESVLIPTKSRTTACVSSQVGC 119 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 SL C FC T K +RNL +EI QV+ I+ R +SNIV Sbjct: 120 SLDCQFCATAKLKRMRNLNPDEIYDQVVA-------------IDNESRLYFDRPLSNIVF 166 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243 MGMGEPL N++NV K++ + GL S +RIT+STSG I ++ + E + LA+SL Sbjct: 167 MGMGEPLMNYNNVMKAVEKITSPEGLGMSPKRITISTSGVPKMIKKLADDEAKIKLAVSL 226 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ N++R ++P N +PLE L +A ++ + + RIT+EY++ K IND+ DA L+ Sbjct: 227 HSARNEVRTQIMPFNETFPLEDLREALEYWYSKTTS-RITYEYIVWKDINDTREDAQALV 285 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 + K +P K+NLI +NP + + + + + ++R+G + +R RG DI AACG Sbjct: 286 RFCKYVPCKVNLIEYNPIDDGNFQQAAIEATNMYQDMLERNGITVTVRRSRGKDIDAACG 345 Query: 364 QLKSLS 369 QL + S Sbjct: 346 QLANKS 351 >gi|317485889|ref|ZP_07944749.1| cfr family radical SAM enzyme [Bilophila wadsworthia 3_1_6] gi|316922863|gb|EFV44089.1| cfr family radical SAM enzyme [Bilophila wadsworthia 3_1_6] Length = 404 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 139/378 (36%), Positives = 203/378 (53%), Gaps = 27/378 (7%) Query: 2 NFLKKESLIGMMREELEEA-LLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 N + ++ + ELE + +G P + R +Q+W+WI+ + F M+D+S+++ Sbjct: 44 NATRMIDILNLTFPELERFIVEDLGQP----KFRAAQVWQWIWQKHATSFDAMTDVSKQL 99 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGT 115 R L + I+ PEIV + S DGT K LLR + +ETV +P R Sbjct: 100 RAKLAEVAEIVLPEIVTVQTSSDGTEKLLLRLRDGAL-----VETVILPSTGQDGSVRIA 154 Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175 CVSSQ+GC++ C+FC TGT +RN+TA EIL QVL+AR LGD I Sbjct: 155 QCVSSQIGCAMGCTFCSTGTMGFIRNMTAGEILSQVLVARMRLGDNRIDHPI-------- 206 Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI 235 I N+V MGMGEPL N ++L + + G+ FS RRIT+ST G + +G+ Sbjct: 207 ---IRNLVFMGMGEPLLNLRETTRALEMLNHDKGMDFSPRRITVSTCGIKAGLRELGDSG 263 Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 LA+SLHA + DLR ++P + L+ L+ YP L ITFEY++L G+ND Sbjct: 264 LAFLAVSLHAPNQDLRAKIMPKAANWHLDDLMATLESYP-LKTREHITFEYLLLGGVNDQ 322 Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 P A L K++ + K+NLI +NP Y + DI+ F + + G ++ +R +G Sbjct: 323 PEHARELAKLVSRVKGKLNLIAYNPSETQLYKAPTEADILAFEKILWSKGVTAILRKSKG 382 Query: 356 LDILAACGQLKSLSKRIP 373 DI AACGQLKS +R Sbjct: 383 QDIKAACGQLKSDWEREK 400 >gi|320527283|ref|ZP_08028468.1| radical SAM enzyme, Cfr family [Solobacterium moorei F0204] gi|320132307|gb|EFW24852.1| radical SAM enzyme, Cfr family [Solobacterium moorei F0204] Length = 346 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 120/366 (32%), Positives = 206/366 (56%), Gaps = 25/366 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +S+ + + + L + G R Q+++W+Y + + FQ M+D+ + L Q Sbjct: 2 QSIYDLNMKMAIDMLAEKG----QKSYRAKQLFQWLYRKRVDSFQEMTDMPASLLEELAQ 57 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 +SI + + +++ DGT K+L + +ETV + +LCV+SQ+GC++ Sbjct: 58 EYSIEPVKEITRQVARDGTTKYLFQL-----ADGSSVETVLMHFHFGESLCVTSQLGCNM 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC +G K R+LTA EI+ QV+ + + +G+++ N+V+MG Sbjct: 113 GCTFCASGLLKKQRDLTAGEIVGQVMFVQKE--------------LDKIGKRVDNVVIMG 158 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245 GEP N+DNV + I + +GL+ R IT+ST G VP I + LAISLHA Sbjct: 159 TGEPFDNYDNVMRFCEIINSDLGLAIGARHITISTCGIVPRIKDFAKGHYQYNLAISLHA 218 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +++LR L+PI++ YPL++L+DA Y +N RITFEY++L G+ND+ A+ L + Sbjct: 219 PNDELRRKLMPIDQAYPLDVLMDALHEYSEGNNR-RITFEYILLHGVNDTDAHAIQLANL 277 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 ++G+ A +NLIP+N Y+ +++K + F + + + G + +R+ G DI AACGQL Sbjct: 278 IRGMNAYVNLIPYNQVDENGYVSTNEKVALHFYDVLMKHGVKATLRSKHGDDIDAACGQL 337 Query: 366 KSLSKR 371 ++ ++ Sbjct: 338 RAKHEK 343 >gi|225018694|ref|ZP_03707886.1| hypothetical protein CLOSTMETH_02644 [Clostridium methylpentosum DSM 5476] gi|224948422|gb|EEG29631.1| hypothetical protein CLOSTMETH_02644 [Clostridium methylpentosum DSM 5476] Length = 348 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 130/366 (35%), Positives = 201/366 (54%), Gaps = 29/366 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++ + EEL E L +G P + R Q++ W++ + + DF M+++S + R L + Sbjct: 3 TDILSLTYEELAEKLGALGQP----KYRAKQVFAWLHSKQVLDFAQMTNLSIQFREQLGK 58 Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +F I +I + +S D T K+L +ETV + ++CVS+QVGC Sbjct: 59 NFYINEIKIRKKLVSQLDDTVKYLYELRD-----GEFVETVVMRYHHGNSICVSTQVGCR 113 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + CSFC + VR+LT EIL Q+ A LG+ KISN+V+M Sbjct: 114 MGCSFCASTKAGFVRHLTPSEILGQIYTAERDLGE-----------------KISNVVLM 156 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEPL NF+NV L + S G + R +TLST G V I R+ E+ + + L+ISLH Sbjct: 157 GIGEPLDNFNNVLTFLELLSHPEGRNLGMRHVTLSTCGLVDQIYRLAEKNLQITLSISLH 216 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++ LR+ +P+NR+YP++ L+ ACR Y + RI+FEY ++ G NDSP A L Sbjct: 217 APNDGLRSQTMPVNRRYPIDELLAACRAYADRTGR-RISFEYALIDGFNDSPAHAKELAS 275 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 ++G+ +NLIP N +Y S Q+ + F++ ++ SG ++ +R G DI AACGQ Sbjct: 276 RIRGMLCHVNLIPVNRIEERDYASSSQQSVKRFAQVLESSGINATVRRTLGQDINAACGQ 335 Query: 365 LKSLSK 370 L+ K Sbjct: 336 LRRDEK 341 >gi|32491320|ref|NP_871574.1| hypothetical protein WGLp571 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|81741588|sp|Q8D1Y5|RLMN_WIGBR RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|25166527|dbj|BAC24717.1| yfgB [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 382 Score = 406 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 158/374 (42%), Positives = 223/374 (59%), Gaps = 23/374 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +++G REEL + +KIG + R QI KWIY R D M+D S+ +++ L Sbjct: 24 KKINILGKTREELYDFFIKIG----EEKFRAEQIMKWIYKRYCDDVSLMTDFSKNLKNKL 79 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I + +I E IS DGT KW+L+ + IETVYIPE +R TLC+SSQ+GC Sbjct: 80 KNIIKIDHLDIESENISQDGTIKWVLKINDQN------IETVYIPEINRATLCISSQIGC 133 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNL + EI+ Q+ A ++ D + +KI+NIVM Sbjct: 134 ALNCKFCATSYQGFNRNLNSYEIISQIWYAMKIINDRNNFKL----------KKITNIVM 183 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N N+ ++ I D+ G SKRRIT+ST+G P I ++G+ I V LAISLH Sbjct: 184 MGMGEPLLNLKNLVPAIKIILDNYGFGLSKRRITISTAGISPVIKKLGKLIDVKLAISLH 243 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPG--LSNARRITFEYVMLKGINDSPRDALNL 302 A ++ +RN ++PIN+KY ++ ++ + + Y +N +I+ EY+ML IND A L Sbjct: 244 APNDIIRNKIMPINKKYNIKSILLSAKKYISTSKANKGKISIEYIMLNEINDKTEHAYQL 303 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 I LK IP KINLIP+NP+P +Y CS+ I F + + + G ++ IR RG+DI AAC Sbjct: 304 INCLKNIPCKINLIPWNPFPYVKYKCSNFNKINNFYKILIKHGITTTIRKQRGIDIKAAC 363 Query: 363 GQLK-SLSKRIPKV 375 GQL ++ RI K Sbjct: 364 GQLSGNVINRINKR 377 >gi|172058977|ref|YP_001815437.1| ribosomal RNA large subunit methyltransferase N [Exiguobacterium sibiricum 255-15] gi|205829757|sp|B1YG36|RLMN_EXIS2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|171991498|gb|ACB62420.1| radical SAM enzyme, Cfr family [Exiguobacterium sibiricum 255-15] Length = 357 Score = 406 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 131/379 (34%), Positives = 210/379 (55%), Gaps = 26/379 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K S+ G+ E++ E L G H R Q+W W+Y + + F M++++++ L Sbjct: 1 MNKPSIYGLTLEQMTEWLSHQG----HKPFRAKQVWDWLYRKRVTTFAEMTNVNKDCLEL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L+Q F+I ++ S DGT K+L + + IETV + K ++CV++QVG Sbjct: 57 LDQSFAIDSMTQAVKQESADGTIKFLFKLYDGSL-----IETVLMRHKYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ CSFC +G K R+L+A EI+ Q++ + + ++S++V Sbjct: 112 CNIGCSFCASGLIKKSRDLSAGEIVEQIMNVQHH------------LDAVGKEERVSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242 +MG+GEP NFDN+ L++ D GL+ R IT+STSG I + + ++ V LAIS Sbjct: 160 VMGIGEPFDNFDNMVDFLNVIKDHNGLAIGARHITVSTSGLADKIYKFADLKLQVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR ++ INR PLE L+ A +Y +N +IT EY++L+G+ND A+ L Sbjct: 220 LHAPNNELRTQIMKINRAIPLEKLMPAIDYYVKTTNR-KITIEYILLRGVNDQKAQAIEL 278 Query: 303 IKIL--KGIPAKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 K+ K +NLIP+NP +Y S +DI TF + +K++G + +R G DI Sbjct: 279 AKLFEDKRHLTYVNLIPYNPVDEHGQYQRSTSEDISTFYDTLKKNGLNCGVRLEHGTDID 338 Query: 360 AACGQLKSLSKRIPKVPRQ 378 AACGQL+S + V + Sbjct: 339 AACGQLRSKQIKKDTVAAK 357 >gi|78358007|ref|YP_389456.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|123727640|sp|Q30X35|RLMN_DESDG RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|78220412|gb|ABB39761.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 358 Score = 406 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 140/367 (38%), Positives = 205/367 (55%), Gaps = 25/367 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++ + EELE L++ + R QIW+W++ + +RDF M+++S++ R L + Sbjct: 2 VDILNLTFEELETFLVE---KLGEKKFRARQIWQWLWNKYVRDFDQMTNVSKQTRAQLKE 58 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCS 125 H I +PE+V S DGT K+LLR + +ETV IP + R T C+S QVGC+ Sbjct: 59 HARIFWPEVVTTSKSQDGTTKFLLRLADGAL-----VETVLIPGSQGRITQCLSCQVGCA 113 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC TGT RN+T EIL QVL+AR L D + N+V M Sbjct: 114 MGCTFCATGTLGFERNMTMSEILGQVLVAREYLNDVAERPI------------LRNLVFM 161 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP-NIARVGEEIGVMLAISLH 244 GMGEPL N D + +SL + +GL FS RRIT+ST G P + R+GE LA+SLH Sbjct: 162 GMGEPLLNLDEIMRSLHTLNSELGLQFSPRRITVSTCGVNPEGLRRLGESGLAYLAVSLH 221 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A + +LR ++P ++ L I+A + YP L RITFEY++L G+NDS A L++ Sbjct: 222 APTQELRRTIMPKAARWELNDFIEALQSYP-LKTRERITFEYLLLGGVNDSLEHAKQLVR 280 Query: 305 ILKGIPAKINLIPFNPW--PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++ AK+NLI +NP Y ++ I+ F + + ++ IR +G DI AAC Sbjct: 281 LVSRTKAKLNLIVYNPSGDEADPYAAPTEERILAFEQYLWSKHVTAIIRKSKGADIKAAC 340 Query: 363 GQLKSLS 369 GQLK+ Sbjct: 341 GQLKAAE 347 >gi|254519239|ref|ZP_05131295.1| radical SAM protein [Clostridium sp. 7_2_43FAA] gi|226912988|gb|EEH98189.1| radical SAM protein [Clostridium sp. 7_2_43FAA] Length = 343 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 128/361 (35%), Positives = 200/361 (55%), Gaps = 30/361 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +++ +E+ + + G R Q++ WIY + I +F M ++ + + L + Sbjct: 3 NILNYSLDEISLWMKENGESA----FRAKQVFSWIY-KNIWNFDDMKNLPKSLVEKLKGN 57 Query: 68 FSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 F I PE+V++ S DGT+K LL F I IE+V + K ++C+S+Q+GC + Sbjct: 58 FYIGIPEVVEKYESTLDGTQKLLLAFDDGNI-----IESVIMKYKHGNSICISTQIGCRM 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC + + VRNLT+ EIL +V++A+ ++G+ +ISNIV+MG Sbjct: 113 GCKFCASTLEGRVRNLTSGEILSEVIIAQKVIGE-----------------RISNIVLMG 155 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHA 245 GEPL N++NV K L + + GL+ +R ITLST G VP I + ++ + LAISLHA Sbjct: 156 SGEPLDNYENVTKFLDLVNADYGLNIGQRHITLSTCGLVPKIYELADKGYSITLAISLHA 215 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 S++ R ++PI KY ++ +++AC +Y + RITFEY ++ GIND DA +L K+ Sbjct: 216 FSDEKRREIMPIANKYSIKEILEACDYYFEKTGR-RITFEYSLVSGINDGKEDAKSLSKL 274 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG +NLIP N +K I F + + +G +R G DI AACGQL Sbjct: 275 LKGRQCHVNLIPVNEIKENTLKRPSKKTIEEFEKIVNENGIEVTVRREMGNDINAACGQL 334 Query: 366 K 366 + Sbjct: 335 R 335 >gi|308274581|emb|CBX31180.1| Ribosomal RNA large subunit methyltransferase N [uncultured Desulfobacterium sp.] Length = 347 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 155/370 (41%), Positives = 221/370 (59%), Gaps = 25/370 (6%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN K+++I + ++E L ++GI RT QI+KWIY + + F+ M+DI E+ Sbjct: 1 MNSESKKNIIELTKDEFSFWLKEMGIEA----YRTHQIFKWIYSKQVDTFEEMTDIGLEL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R LL H++I +IS DG++K+L IE+V IPEK+ TLC+SS Sbjct: 57 RKLLLNHYTINRLNKQKVEISSDGSKKYLFGLTD-----GNYIESVLIPEKNHYTLCISS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC+ C FC T RNLT EI+ QV ++ + ++S Sbjct: 112 QVGCAQGCRFCLTAKGGFARNLTKAEIVSQVRDIQN--------------DVAGEKLRLS 157 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSM-GLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 NIV MGMGEPL N+ NV K++ S GL FSKR+IT+ST+G VP + +G++ GV L Sbjct: 158 NIVFMGMGEPLANYKNVIKAIDTISAKDTGLGFSKRKITISTAGLVPFLKDLGKDAGVNL 217 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 AISL+A N R++L+PINRKYP++ LI+ACR Y L RITFEY+++KG+NDSP DA Sbjct: 218 AISLNAADNSTRDMLMPINRKYPVKELIEACRTY-DLKPRNRITFEYILIKGVNDSPADA 276 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L K+L+ + +KINLIPFN + E+ ++ I F + Y++ IR +G DI Sbjct: 277 NRLAKLLRPVKSKINLIPFNEYETSEFKRPEESVIHHFLNILLNENYTAVIRNSKGQDIS 336 Query: 360 AACGQLKSLS 369 AACGQL++ + Sbjct: 337 AACGQLRARN 346 >gi|319953716|ref|YP_004164983.1| 23S rRNA m(2)a-2503 methyltransferase [Cellulophaga algicola DSM 14237] gi|319422376|gb|ADV49485.1| 23S rRNA m(2)A-2503 methyltransferase [Cellulophaga algicola DSM 14237] Length = 347 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 130/370 (35%), Positives = 206/370 (55%), Gaps = 24/370 (6%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M+ +KK+ + + +E+L E + G R +Q+++W++ +G F+ M+++S+E Sbjct: 1 MDTIKKKDIRALTKEQLREFFVTNGDKA----FRGNQVYEWLWQKGAHSFEAMTNVSKET 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R +L Q+F I + ++ + S DGT K +R I +E+V IP K+R T CVSS Sbjct: 57 RDMLEQNFVINHIKVDVMQRSNDGTIKNAVRLHDDLI-----VESVLIPTKTRSTACVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGCSL C FC T K +RNL +EI QV+ I+ R +S Sbjct: 112 QVGCSLDCKFCATSRLKRMRNLNPDEIYDQVVA-------------IDNESRLYFNRPLS 158 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVML 239 NIV MGMGEPL N++NV K++ + + GL S +RI +STSG I ++ + E+ L Sbjct: 159 NIVFMGMGEPLMNYNNVLKAIDMITSPEGLGMSPKRIVVSTSGVPKMIRKMADDEVKFKL 218 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH+ +++R ++P N + L L + +++ + RIT+EYV+ KGINDS +D Sbjct: 219 AVSLHSAIDEIRTSIMPFNANFTLTDLRQSLQYWYAKT-RSRITYEYVIWKGINDSQKDV 277 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L+ K P+K+NLI +NP E+ + I + +++ + +R RG DI Sbjct: 278 DALVDFCKFAPSKVNLIEYNPIDDGEFQQASNAAIDMYVNTLEQHNIAVTVRRSRGKDID 337 Query: 360 AACGQLKSLS 369 AACGQL + S Sbjct: 338 AACGQLANKS 347 >gi|258592798|emb|CBE69107.1| putative pyruvate formate lyase activating enzyme 2 (yfgB) [NC10 bacterium 'Dutch sediment'] Length = 372 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 151/368 (41%), Positives = 216/368 (58%), Gaps = 26/368 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K L G+ EE+E + G P R Q++ WIY R F M+D+ +R L Sbjct: 20 NKIDLKGLSLEEMERVVSDHGEPV----YRGRQLFHWIYARDAHTFAEMTDLPIALRARL 75 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +H +I + ++IS DGTRK+LL +IETV IP++ R T C+S+QVGC Sbjct: 76 AEHTAIGALTPLAKEISRDGTRKYLLGCTDER-----QIETVLIPDERRLTACLSTQVGC 130 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C+FC TG VR+L + E++ QVL + L G +I N+V+ Sbjct: 131 ALACAFCLTGKMGFVRHLQSGEVVDQVLALQRDL---------------QPGERIGNLVL 175 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MGMGEPL N+D K+L+I S MGL++ RRITLST G VP I R+G+ +GV LA+SL Sbjct: 176 MGMGEPLHNYDATVKALTILSHPMGLAYPPRRITLSTVGLVPEIVRLGQSGLGVNLAVSL 235 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++LR+ LVPINR+YPL+ L+ A R YP L + RR+TFEYV++ G+ND DA L+ Sbjct: 236 HASTDELRDRLVPINRRYPLKELMVALRAYP-LPSRRRLTFEYVLIDGVNDRSEDARELV 294 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+L+G+ K+NL+ N P + Q+ + F ++ + + IR RGLDI AACG Sbjct: 295 KLLRGLRCKVNLLSLNEAPAIPFRRPSQERVEMFQRILRSADILATIRESRGLDISAACG 354 Query: 364 QLKSLSKR 371 L + + Sbjct: 355 LLATEPDQ 362 >gi|307244457|ref|ZP_07526566.1| 23S rRNA m2A2503 methyltransferase [Peptostreptococcus stomatis DSM 17678] gi|306492150|gb|EFM64194.1| 23S rRNA m2A2503 methyltransferase [Peptostreptococcus stomatis DSM 17678] Length = 345 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 144/369 (39%), Positives = 210/369 (56%), Gaps = 31/369 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K L + EEL++ L++IG + R SQI+ WIY R IRDF M++I + +R L Sbjct: 5 KFVLKNLTEEELKDFLVEIG----EKKFRGSQIYSWIY-RNIRDFDEMNNIPKSLRTKLQ 59 Query: 66 QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +H I E S DGT+K+L R I IETV + +R T+CVS+QVGC Sbjct: 60 EHAVIGNIEKDLRLDSKIDGTKKYLFRLNDGNI-----IETVAMDYDTRLTVCVSNQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC + L RNL A EIL Q++ + +G+++SNIVM Sbjct: 115 RMGCRFCASTIDGLSRNLEAWEILDQIIKVQE-----------------DLGKRVSNIVM 157 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243 MG GEPL N++N + L + ++ GL+ R ITLST G V I + + EI + LAISL Sbjct: 158 MGSGEPLDNYENSIRFLKLVNEKNGLNIGNRHITLSTCGIVDRIRDLADLEIPINLAISL 217 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ ++ R ++P+ KY +E +I+AC +Y G +N RITFEY ++KG+NDS ++A ++ Sbjct: 218 HSPFDEERQKIMPVANKYKVEQIIEACHYYIGKTNR-RITFEYSLIKGVNDSKKEAERIV 276 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+LKG+ +NLIP NP ++ D I F ++++ IR G DI ACG Sbjct: 277 KLLKGMLCHVNLIPINPIEERDFEKPDILYINKFKAYLEKNNIPVTIRNSMGADISGACG 336 Query: 364 QL-KSLSKR 371 QL +S+SKR Sbjct: 337 QLRRSVSKR 345 >gi|15902720|ref|NP_358270.1| hypothetical protein spr0676 [Streptococcus pneumoniae R6] gi|116516867|ref|YP_816163.1| hypothetical protein SPD_0669 [Streptococcus pneumoniae D39] gi|81588140|sp|Q8DQG7|RLMN_STRR6 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|122278951|sp|Q04LD5|RLMN_STRP2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|15458264|gb|AAK99480.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] gi|116077443|gb|ABJ55163.1| radical SAM enzyme, Cfr family protein [Streptococcus pneumoniae D39] Length = 361 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 122/373 (32%), Positives = 209/373 (56%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QV C+ Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVDCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC + K R+L EI+ Q++L + + ++S+IV+M Sbjct: 113 IGCTFCASDLIKKQRDLNNGEIVAQIMLVQKYFAE------------RGQDERVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N++NV + +D G++ R IT+STSG I +E + V LA+SLH Sbjct: 161 GIGEPFDNYNNVLNFVCTINDDKGMAIGARHITVSTSGLAHKIRNFADEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +NDS AL L + Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDSVEQALELAE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGGNCVVRQEYGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+S + + + Sbjct: 340 CGQLRSNTMKRDR 352 >gi|332976466|gb|EGK13312.1| cfr family radical SAM enzyme [Desmospora sp. 8437] Length = 350 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 124/364 (34%), Positives = 198/364 (54%), Gaps = 25/364 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + + + + +G P R Q+ W+YV+ + F M+++S+ +R L + Sbjct: 3 PNAYDWTHADWKRWMKGVGEPA----FRADQVMNWLYVKRVPSFADMTNLSRGLRERLER 58 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 F + E + + S DGT K+L + IETV + ++CV++QVGC + Sbjct: 59 DFQLKPLETITVRQSADGTIKFLFQLFD-----GHAIETVIMRHNYGNSVCVTTQVGCRV 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC + L R+L A E++ QVL A+ L + G ++ ++V+MG Sbjct: 114 GCTFCASTLGGLKRDLKAGEVVAQVLEAQRYLDRW--------------GERVHSVVIMG 159 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 +GEP N+D + + + D GL+ ++RRIT+STSG VP+I R EE + V LAISLHA Sbjct: 160 IGEPFENYDASVQFMRVIQDEKGLNLAQRRITVSTSGIVPSIYRFAEEGLQVGLAISLHA 219 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + LR L+P++ +YPLE L+ ACR+Y + RIT+EY ++ G ND+P A L ++ Sbjct: 220 PNQALRKRLMPVSYRYPLEELLAACRYYVQKTGR-RITYEYALIGGKNDAPEHAHELGRL 278 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G + INLIP N P Y + + I F + ++ ++ IR G DI AACGQL Sbjct: 279 LEGSGSLINLIPVNHVPERNYTRTPRNRIFKFRDILQSYNLNTTIRREHGSDIEAACGQL 338 Query: 366 KSLS 369 ++ Sbjct: 339 RAQH 342 >gi|119488056|ref|ZP_01621500.1| hypothetical protein L8106_11682 [Lyngbya sp. PCC 8106] gi|119455345|gb|EAW36484.1| hypothetical protein L8106_11682 [Lyngbya sp. PCC 8106] Length = 348 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 131/362 (36%), Positives = 187/362 (51%), Gaps = 31/362 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L+G+ EEL + + G P R Q+++WIY +G + ++ ++ R + Sbjct: 9 VPLLGLSLEELTNWVQEQGQPA----YRGKQLYQWIYQKGSKSLSEITVFPKQWRETVA- 63 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 +FSI I ++ D T K+LL+ I IETV IP + R T+CVSSQVGC + Sbjct: 64 NFSIGRSTIHYRSVAPDQTVKYLLKLADNNI-----IETVGIPTEKRLTVCVSSQVGCPM 118 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG VRNL EI+ QVL + GR++S+IV MG Sbjct: 119 ACDFCATGKGGFVRNLETHEIIDQVLTVQE-----------------DFGRRVSHIVFMG 161 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHA 245 MGEPL N NV ++ + +G +R IT+ST G I ++ V LA+SLHA Sbjct: 162 MGEPLLNTKNVVAAIKSLNQDVG--IGQRMITVSTVGIPQQIRDFAGYQLQVTLAVSLHA 219 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + LR L+P YPLE LI CR Y + RR++FEY++L ND P A+ L Sbjct: 220 SNQKLREKLIPSADHYPLEKLIADCREYVN-TTGRRVSFEYILLANFNDKPEHAIELATH 278 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G + +NLIP+NP +Y I TF + +K + +R RGL+ AACGQL Sbjct: 279 LRGFQSHVNLIPYNPISEVDYQRPTSPQINTFMKALKERHIAVSVRYSRGLEADAACGQL 338 Query: 366 KS 367 ++ Sbjct: 339 RA 340 >gi|158522322|ref|YP_001530192.1| radical SAM protein [Desulfococcus oleovorans Hxd3] gi|205829745|sp|A8ZV25|RLMN_DESOH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|158511148|gb|ABW68115.1| radical SAM enzyme, Cfr family [Desulfococcus oleovorans Hxd3] Length = 371 Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 155/364 (42%), Positives = 211/364 (57%), Gaps = 26/364 (7%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 + + R + L I R Q++KW++V F M++IS+ VR LL + F Sbjct: 28 IQNLTRARFADWLNAHNI----APYRADQVFKWLFVHRAESFDQMTNISKPVRTLLAESF 83 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 I +I + S DGTRK+L IE+V IPE+ TLCVS+QVGC+ C Sbjct: 84 IIGRLKIARTQQSADGTRKYLFELSD-----GEHIESVLIPEEDHFTLCVSTQVGCAQGC 138 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 +FC T + VRNLT EI QVL A L + +++NIV+MGMG Sbjct: 139 AFCMTAKKGFVRNLTPAEITGQVLGALKTL---------------APEERLTNIVLMGMG 183 Query: 189 EPLCNFDNVKKSLSIASD-SMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 EPL N+DNV SL D GL FS RR+TLSTSG VP +A +G V LA+SL+A Sbjct: 184 EPLANYDNVITSLDTICDGDCGLQFSTRRVTLSTSGLVPRMAPLGLATTVNLAVSLNATD 243 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 N R++L+PIN+ YP+E+L++ACR YP LSN R+ITFEY+++ G+NDS +DAL L+K+L+ Sbjct: 244 NKTRDMLMPINKTYPIEVLLEACRTYP-LSNRRKITFEYILMAGVNDSEKDALRLVKLLR 302 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 I AK+NLIPFN G + D I F + + Y+ R +G DI AACGQL + Sbjct: 303 SIKAKVNLIPFNEHEGAAFKRPDDAAIERFKQILHDRQYTVMTRQSKGADISAACGQLAA 362 Query: 368 LSKR 371 K+ Sbjct: 363 DIKK 366 >gi|206900837|ref|YP_002251150.1| radical SAM enzyme, Cfr family [Dictyoglomus thermophilum H-6-12] gi|254807170|sp|B5YF42|RLMN_DICT6 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|206739940|gb|ACI18998.1| radical SAM enzyme, Cfr family [Dictyoglomus thermophilum H-6-12] Length = 348 Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 140/368 (38%), Positives = 212/368 (57%), Gaps = 28/368 (7%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +++ +E+ + L G P R QI+ W+Y + I + M+++ + +R + ++ Sbjct: 3 NILSFDIDEIRDILRGWGEPS----YRADQIFDWVYKKLILNPSSMTNLPKGLRQKIAEY 58 Query: 68 FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 FS P++V KI+ +G T+K+LL IETV I K+R T+CVS QVGC++ Sbjct: 59 FSFDIPKVV--KITGEGNTKKYLLELED-----GENIETVLISHKNRNTVCVSVQVGCAI 111 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG L RNL EI+ Q++L + L + G +ISN+V MG Sbjct: 112 GCKFCATGLVGLRRNLNTHEIVGQIILIQKELFE--------------KGDRISNVVYMG 157 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 MGEPL N+DNV KS+ I + GL+ + ITLST G VP I ++GEE + V LAISLHA Sbjct: 158 MGEPLLNYDNVVKSIRIINREWGLNIGSKHITLSTIGIVPKIYQLGEEDLKVRLAISLHA 217 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +N+LR+ ++PIN++YP+E L+++ +Y + R+TFEYV++K ND A+ L + Sbjct: 218 PNNELRSKIIPINKEYPIEKLLESAFYYAEKTGR-RVTFEYVLIKNFNDREEHAIELAGL 276 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LK P +NLIP+N P + SD KDI F + + +G + +R G I A CGQL Sbjct: 277 LKNKPVHVNLIPWNKVPEYPWETSDLKDIFKFKKILSDAGINVTLRISYGSRIKAGCGQL 336 Query: 366 KSLSKRIP 373 ++L + Sbjct: 337 RALYLKSK 344 >gi|169349817|ref|ZP_02866755.1| hypothetical protein CLOSPI_00555 [Clostridium spiroforme DSM 1552] gi|169293385|gb|EDS75518.1| hypothetical protein CLOSPI_00555 [Clostridium spiroforme DSM 1552] Length = 342 Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 121/363 (33%), Positives = 190/363 (52%), Gaps = 28/363 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +++ E+L E I + R Q++ W+Y + R F MSD+S+E+R+ L Sbjct: 2 KNIYDYSLEQLTEYFQSI----KQKPFRAKQVFSWLYQKDARSFDDMSDLSKELRNSLKD 57 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 F+ +I ++++S DGT K+L + IE+V + +LCV+SQVGC++ Sbjct: 58 EFNFDILKIKEKQVSRDGTIKYLFELLDGSL-----IESVLMIHDYGKSLCVTSQVGCNM 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC +G R+L+ EI+ Q++ + ++IS++V+MG Sbjct: 113 KCKFCASGLLNKQRDLSPGEIVSQIIKIQQ-----------------DTNQRISHVVVMG 155 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 GEP N+DNV + I + GL+ R IT+ST G + I R +E I LAISLHA Sbjct: 156 TGEPFDNYDNVMDFVRIINHPNGLAIGARHITISTCGLIKGIERYSDEGIQTNLAISLHA 215 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++RN L+PIN+ YP++ L Y +N R+TFEY++LK IND A L Sbjct: 216 PNDEIRNELMPINKIYPMDKLRQVVSDYIDKTNR-RVTFEYILLKDINDDIIYARQLAHY 274 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G+ A +NLIP+N Y S ++ F + R + +R G DI ACGQL Sbjct: 275 LRGLNAYVNLIPYNSVDEHGYQPSKKEQAELFKSELLRLHINVTMRKEHGRDIDGACGQL 334 Query: 366 KSL 368 ++ Sbjct: 335 RAK 337 >gi|223038329|ref|ZP_03608623.1| radical SAM enzyme, Cfr family [Campylobacter rectus RM3267] gi|222880186|gb|EEF15273.1| radical SAM enzyme, Cfr family [Campylobacter rectus RM3267] Length = 416 Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 143/380 (37%), Positives = 215/380 (56%), Gaps = 42/380 (11%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++L+ EL+E L R QI++W+Y + F M ++ +++R L Q Sbjct: 2 KNLLDFTLNELKEQL--------SPPFRAKQIFEWLYKKNATSFDEMLNLPKDLRANLVQ 53 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------------R 113 F + V + S DG+ K+L + IE+V +P K R Sbjct: 54 EFYFDPLKCVKFEQSADGSIKYLFELKD-----GLRIESVLLPMKEEQTNEQGKISRHAR 108 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 T+CVSSQVGC + C+FC T LVRNLTA EI+ Q+L + Sbjct: 109 YTVCVSSQVGCKMGCAFCLTAKGGLVRNLTAGEIVGQILWIKREN--------------K 154 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233 + N+V MGMGEPL N +V K++ I +++ GL+ S RR T+STSG I ++GE Sbjct: 155 IPYERRINVVYMGMGEPLDNLASVSKAVKILTENDGLAISPRRQTVSTSGLGNQIKKLGE 214 Query: 234 -EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 ++GV+LAISLHAV+++LR+ L+PIN+ Y +E ++DA R +P + +R+ FEY++++G+ Sbjct: 215 MDLGVLLAISLHAVTDELRSRLMPINKAYNIEAVMDAVRGFP-IDMRKRVMFEYLVIRGL 273 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 NDS DA L+++L GI AK+NLI FNP G E+ + D+V F + + G + IR Sbjct: 274 NDSLADAKKLVRLLHGIRAKVNLIYFNPHEGSEFERPELSDMVKFQDYLCAHGITCTIRQ 333 Query: 353 PRGLDILAACGQLKSLSKRI 372 +GLDI AACGQLK S++I Sbjct: 334 SKGLDISAACGQLKQRSEKI 353 >gi|313901449|ref|ZP_07834906.1| 23S rRNA m(2)A-2503 methyltransferase [Thermaerobacter subterraneus DSM 13965] gi|313468277|gb|EFR63734.1| 23S rRNA m(2)A-2503 methyltransferase [Thermaerobacter subterraneus DSM 13965] Length = 353 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 128/368 (34%), Positives = 200/368 (54%), Gaps = 26/368 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + +G++ EEL L G P R QI+ W + RG+ F M+D+ +E+R Sbjct: 1 MSTRDWVGLLPEELARELEAWGQPA----YRGRQIFAWFHRRGVTRFSAMTDLPRELRER 56 Query: 64 LNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L + P + ++ DGTRK+LL IETV + + +LCVSSQV Sbjct: 57 LAEQGDPAVPAVRRLQVDPEDGTRKYLLEL-----ADGQLIETVLMRHRYGLSLCVSSQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC++ C FC + LVRNLTA E+ Q+L+ L + G ++S++ Sbjct: 112 GCAMGCRFCASTLGGLVRNLTAAEMAGQLLVVNRDLAE--------------RGERVSHL 157 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 V+MG+GEPL N D + L +A +G S R +T+STSG VP I ++ E + + LA+ Sbjct: 158 VVMGIGEPLQNLDATLQFLRVAHHPLGAGISYRHMTVSTSGLVPRIRQLAREGLPITLAV 217 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++ LR+ L+P+NR++P+ L+ ACR Y + RITFEYV+++ +ND P A Sbjct: 218 SLHAPNDALRSWLMPVNRRWPIAELMAACREYVEETGR-RITFEYVLIEDVNDRPEHARE 276 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L +++ + A +NLIP+NP + + + F+ ++R G + +R G I AA Sbjct: 277 LARLVGPLHAHVNLIPWNPVSERPFKAPSPERVQAFAAELRRQGVNVTVRRELGQRIEAA 336 Query: 362 CGQLKSLS 369 CGQL+ + Sbjct: 337 CGQLRRRA 344 >gi|307153286|ref|YP_003888670.1| radical SAM enzyme, Cfr family [Cyanothece sp. PCC 7822] gi|306983514|gb|ADN15395.1| radical SAM enzyme, Cfr family [Cyanothece sp. PCC 7822] Length = 350 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 123/362 (33%), Positives = 189/362 (52%), Gaps = 31/362 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+G +EL E + + G P R Q+++W+Y +G R +S + R + + Sbjct: 18 LLGKSLQELTEWVQEQGQPA----YRGKQLYQWLYEKGARSLSDISVFPKSWREEVKD-Y 72 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 I +I I+ D TRK+LLR I IETV IP + R T+CVSSQVGC + C Sbjct: 73 PIGRSQIHHRSIAPDKTRKYLLRLQDGLI-----IETVGIPTEKRLTVCVSSQVGCPMDC 127 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG RNL EI+ QVL + R++S++V MGMG Sbjct: 128 DFCATGKGGFTRNLAPHEIVDQVLTVQE-----------------DFQRRVSHVVFMGMG 170 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVS 247 EPL N V +++I + +G+ R +T+ST G I ++ ++ V A+SLHA + Sbjct: 171 EPLLNLKAVVSAVNILNQDVGIGM--RSLTISTVGLPAKIEQLARHQLQVTFAVSLHAPN 228 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 LR L+P + YPL+ L++ C Y ++ R+TFEY++L G+ND P A L ++ Sbjct: 229 QALREQLIPSAKHYPLKNLLEDCHKYVEMTKR-RVTFEYILLAGVNDLPEQAQELAVQIR 287 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 G + +NLIP+NP +Y + + I F +++ + +R RGL+ AACGQL++ Sbjct: 288 GFQSHVNLIPYNPISEADYKRPNSQRINAFLNILQQENIAVSVRYSRGLETDAACGQLRA 347 Query: 368 LS 369 Sbjct: 348 AK 349 >gi|257461212|ref|ZP_05626310.1| radical SAM enzyme, Cfr family [Campylobacter gracilis RM3268] gi|257441586|gb|EEV16731.1| radical SAM enzyme, Cfr family [Campylobacter gracilis RM3268] Length = 369 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 139/379 (36%), Positives = 211/379 (55%), Gaps = 42/379 (11%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +++ +ELE + + R QI++WIY + + DF M ++ +E+R L Q Sbjct: 2 KNIFDFTMKELENFV--------EPKFRAKQIYEWIYKKNVDDFAQMLNLPKEIRQSLAQ 53 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------------R 113 +F + + V + S DG+ K+L + IE+V +P K R Sbjct: 54 NFYLDPLKCVRSETSSDGSIKYLF-----ALKDGKTIESVLLPMKDELRDENEKIIRHAR 108 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 ++CVSSQVGC + CSFC T VRNLT EI+ Q+ L + + Sbjct: 109 YSICVSSQVGCKIGCSFCLTAKGGFVRNLTPGEIVAQIWLIKKMNAI------------- 155 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233 + N+V MGMGEPL N DNV K++ I ++ GL+ + RR T+STSG I ++GE Sbjct: 156 -PYERRVNVVYMGMGEPLNNLDNVAKAVQILKENDGLAIAPRRQTISTSGLSTQIKKLGE 214 Query: 234 -EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 ++GV+LAISLHAV ++LR L+PINR Y + ++ A R +P + +R+ FEY+M+ G+ Sbjct: 215 MDLGVLLAISLHAVDDELREKLMPINRAYNIASIMQAVREFP-IDLRKRVMFEYLMIDGV 273 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 ND P DA L+K+L GI AK+NLI FNP G + ++++ F + + G + IR Sbjct: 274 NDRPSDAKTLVKLLHGIRAKVNLIYFNPHEGSSFGRPSPENMIKFQDYLCAHGITCTIRQ 333 Query: 353 PRGLDILAACGQLKSLSKR 371 +GLDI AACGQLK +++ Sbjct: 334 SKGLDISAACGQLKQRNEQ 352 >gi|239904707|ref|YP_002951445.1| hypothetical protein DMR_00680 [Desulfovibrio magneticus RS-1] gi|259491985|sp|C4XTP4|RLMN_DESMR RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|239794570|dbj|BAH73559.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 351 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 134/362 (37%), Positives = 201/362 (55%), Gaps = 22/362 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +LI + ELE ++ +G P R Q+W+W++ + R+ GM+D+S+ +R L + Sbjct: 2 TNLIDLTFHELESLIVSLGEPP----YRARQVWQWLWQKRCREIAGMTDVSKALRARLEE 57 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I +P + + S DGT K+LL + +E V IPEK T C+S+QVGC++ Sbjct: 58 VAEIRWPVVEMVRESRDGTVKFLL-----ALDDGERVECVLIPEKDHYTACLSTQVGCAM 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG RN+T E+L QVL+ R L D V + N+V MG Sbjct: 113 GCGFCATGMLGFRRNMTPGEMLGQVLVGRQYLTD------------KGVELGLRNLVFMG 160 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N++N+ K+L GL FS RRIT+ST+G ++ +G LAISLHA Sbjct: 161 MGEPLLNYENLLKTLEALHHPQGLDFSGRRITVSTAGVARHLLDLGRTGLCSLAISLHAP 220 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 + R ++P + L+ L+D YP L R+TFEY++L G+ND+ DA L+++L Sbjct: 221 TQAQRERIMPGAARLELDKLMDLLAQYP-LKPRERLTFEYLLLAGVNDADADARELVRLL 279 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + AK+NLI FN PG Y D+ ++ F + +K G ++ +R +G DI AACGQL+ Sbjct: 280 SRVKAKVNLIVFNATPGLPYSPPDEARVLAFQDILKSKGLTATLRKSKGSDIAAACGQLR 339 Query: 367 SL 368 + Sbjct: 340 AE 341 >gi|255657702|ref|ZP_05403111.1| radical SAM enzyme, Cfr family [Mitsuokella multacida DSM 20544] gi|260849890|gb|EEX69897.1| radical SAM enzyme, Cfr family [Mitsuokella multacida DSM 20544] Length = 347 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 130/365 (35%), Positives = 197/365 (53%), Gaps = 24/365 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + + G+ EEL+EAL +P + R QI +W+Y RG F M+++S+++R L+ Sbjct: 2 KDIFGLTVEELQEALQPFSLP----KYRARQIAEWMYQRGATGFADMTNLSKKLREELSG 57 Query: 67 HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F I P+ D S DG T K+LL F +ETV + + ++CVS+Q GC+ Sbjct: 58 AFVIGRPKCKDRLDSSDGHTTKFLLEFTD-----GTAVETVLMRQPYGNSICVSTQAGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC + + RNLT EIL Q ++ +L G K+ +V+M Sbjct: 113 MGCAFCASTLHGMARNLTTGEILSQAIVISDMLR------------AEGQGEKVDTVVIM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G GEPL N++NV + + + L S R ITLSTSG VP + ++ EE I + L++SLH Sbjct: 161 GSGEPLMNYENVLGFIRLLHEDYVLGLSYRSITLSTSGIVPQMYKLAEEGIPISLSVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +LR+ L+PINRKYPL ++ A RHY ++ R+T+EY+++ +ND A L+ Sbjct: 221 APEQELRSTLMPINRKYPLVDVVRAARHYAEVTKR-RVTYEYILIDRVNDGEEQARELVS 279 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L+G A +NLIP NP L I F + + +R G DI AACGQ Sbjct: 280 LLRGQLASVNLIPINPVAERHLLRPSAARIDWFEHYLTAHHINVTVRREMGTDIQAACGQ 339 Query: 365 LKSLS 369 L++ Sbjct: 340 LRNKH 344 >gi|225856442|ref|YP_002737953.1| ribosomal RNA large subunit methyltransferase N [Streptococcus pneumoniae P1031] gi|254807219|sp|C1CJL5|RLMN_STRZP RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|225724466|gb|ACO20318.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae P1031] Length = 361 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 122/364 (33%), Positives = 203/364 (55%), Gaps = 26/364 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLTHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DQFVVNPLKQGIVQESADGTVKYLFELPDGML-----IETVLMCQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + +IS+IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERISHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N++NV +D G++ R IT+S SG I +E + V LA+SLH Sbjct: 161 GIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSISGLAHKIRDFADEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L + Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA Sbjct: 280 LLKNIKKSSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGGNCVVRQEHGTDIDAA 339 Query: 362 CGQL 365 CGQL Sbjct: 340 CGQL 343 >gi|139439867|ref|ZP_01773232.1| Hypothetical protein COLAER_02266 [Collinsella aerofaciens ATCC 25986] gi|133774795|gb|EBA38615.1| Hypothetical protein COLAER_02266 [Collinsella aerofaciens ATCC 25986] Length = 350 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 117/372 (31%), Positives = 192/372 (51%), Gaps = 29/372 (7%) Query: 1 MNFLKK-ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59 MN K + + + + ++ E + ++G P R Q+ +W++ + + F M+++ + Sbjct: 1 MNPRTKSQDIRDLSQNDIRELVAELGQPA----FRAKQLIEWVFEKNVCSFDDMTNLPKA 56 Query: 60 VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119 R L + F+ P + +++S DG+RK+LL + V +ETV +P +++ ++CVS Sbjct: 57 FREQLKEAFAFDTPTELTKQVSKDGSRKYLLEYHD-----GVSVETVGMPRRNKLSVCVS 111 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 +Q GC + C+FC TG L R+LTA+EI+ QVL + G+ + Sbjct: 112 TQAGCGMGCAFCATGLNGLKRSLTAQEIVDQVLHVSNDFGE-----------------RA 154 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVM 238 +++V MG GEP N+D V K+L I +D G+ R +T+STSG +P I + + Sbjct: 155 TSVVFMGQGEPFANYDEVLKALRILNDPDGIGIGARHLTVSTSGVIPGIRKFADIPEQFT 214 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLH+ RN L+P +KY L L +A + Y + R T+EY M++G+ND+ + Sbjct: 215 LAVSLHSAIQSTRNKLMPGVKKYTLFRLHEALQLYTEKTGR-RPTYEYAMIEGVNDTNPE 273 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 L +G +NLI N G S + ++ G + IR RG DI Sbjct: 274 MQALCDFCEGTLCHVNLIQLNDIEGSPLKPSPIHKVEDLQRRLESRGIETTIRNSRGNDI 333 Query: 359 LAACGQLKSLSK 370 AACGQLK K Sbjct: 334 DAACGQLKQRFK 345 >gi|182683687|ref|YP_001835434.1| hypothetical protein SPCG_0717 [Streptococcus pneumoniae CGSP14] gi|205829907|sp|B2INF0|RLMN_STRPS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|182629021|gb|ACB89969.1| hypothetical protein SPCG_0717 [Streptococcus pneumoniae CGSP14] Length = 361 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 120/373 (32%), Positives = 207/373 (55%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLTHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DQFVVNPLKQGIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + ++++IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFAE------------RGQDERVNHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N++NV +D G++ R IT+STSG I +E + V LA+SLH Sbjct: 161 GIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRNFADEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L + Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+ P + Y S ++ ++ F + +K+ G + +R G DI AA Sbjct: 280 LLKNIKKLSYVNLIPYTPVSEHDQYSRSPKERVLAFYDTLKKKGVNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 GQL+S + + + Sbjct: 340 YGQLRSNTMKRDR 352 >gi|134299564|ref|YP_001113060.1| radical SAM protein [Desulfotomaculum reducens MI-1] gi|205829746|sp|A4J582|RLMN_DESRM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|134052264|gb|ABO50235.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfotomaculum reducens MI-1] Length = 350 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 126/359 (35%), Positives = 195/359 (54%), Gaps = 29/359 (8%) Query: 14 REELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYP 73 + E++ + +G R QI +W++ +G+ F M+++S+ +R LN+ ++ Sbjct: 16 QSEIQHFIKDLG----EKPFRADQICRWVFAQGVSSFDEMTNLSKGLRAKLNELTTLSQA 71 Query: 74 EIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132 I+ ++S G T K+L P +E+V + ++CVS+QVGC + C FC Sbjct: 72 TILTSQVSAKGDTIKFLFGLPD-----GHAVESVLMKHTYGNSVCVSTQVGCRMGCLFCA 126 Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192 + LVRNL+ EI QVL + G+ ++S+IV+MG GEPL Sbjct: 127 STINGLVRNLSPGEIYDQVLGIQRETGE-----------------RVSHIVIMGAGEPLD 169 Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLR 251 NFDNV K L GL+ R ITLST G VP + + ++ + LA+SLHA ++DLR Sbjct: 170 NFDNVLKFLENIHAEYGLNIGYRHITLSTCGLVPRMQELALRKLPITLAVSLHAPNDDLR 229 Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311 + LVPINR+Y + LI+AC +Y ++ RITFEY +L GINDS L +LK + Sbjct: 230 DKLVPINRRYKIHQLIEACSNYIEITGR-RITFEYALLSGINDSDEHVRQLAALLKNLLC 288 Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 INLIP NP E++ + + + F + +++ G + +R G DI AACGQL+ + Sbjct: 289 HINLIPVNPVEEKEFIRTPPEKVERFRQYLEKVGLNVTVRRELGGDIDAACGQLRRRYE 347 >gi|260893173|ref|YP_003239270.1| radical SAM enzyme, Cfr family [Ammonifex degensii KC4] gi|260865314|gb|ACX52420.1| radical SAM enzyme, Cfr family [Ammonifex degensii KC4] Length = 360 Score = 405 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 124/363 (34%), Positives = 194/363 (53%), Gaps = 28/363 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K L + E+E + + + R R Q+ W++V+G+ F+ M+++ + +R L Sbjct: 2 KLDLKSLRFPEIESWVTE---ELKEPRYRAQQLIDWLFVKGVTSFREMTNLPKTLRERLE 58 Query: 66 QHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + SI Y + ++ S DG T K+L IETV++ T+CVS+QVGC Sbjct: 59 EIASITYLSVRVKRCSRDGRTIKFLY-----LARDGAGIETVFMRHPWGRTVCVSTQVGC 113 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC +G + L RNL+A EI QVL + +G +++++V+ Sbjct: 114 RMGCRFCASGAKGLKRNLSAGEIYEQVLRTQ-----------------VELGERVTHVVL 156 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243 MGMGEP N + + L + GL+ R+IT+ST G VP I + + + LA+SL Sbjct: 157 MGMGEPFDNQEATFRFLENITHPAGLNIGARKITISTCGVVPGIRALAQLKRQFGLAVSL 216 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA ++LR+ L+PINR+YPL+ L+ AC Y ++ RITF Y M+ GIND +A L Sbjct: 217 HAPRDELRSWLLPINRRYPLKELLAACWEYVEATHR-RITFAYTMIAGINDGQEEARELA 275 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LKG+ +NLIPFN + I F ++ +G + +R RG +I AACG Sbjct: 276 RLLKGLLCHVNLIPFNLVNERRFRPPSPARIEAFCRILEENGIPATVRRSRGEEIEAACG 335 Query: 364 QLK 366 QL+ Sbjct: 336 QLR 338 >gi|257438998|ref|ZP_05614753.1| radical SAM enzyme, Cfr family [Faecalibacterium prausnitzii A2-165] gi|257198583|gb|EEU96867.1| radical SAM enzyme, Cfr family [Faecalibacterium prausnitzii A2-165] Length = 346 Score = 405 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 127/363 (34%), Positives = 202/363 (55%), Gaps = 28/363 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K + + EL AL +G P R QI+ W++ + + +F M+D + + L Sbjct: 3 QKRCISSLTLAELTAALKAMGQPG----FRAKQIFHWVHQKLVTEFSAMTDQPKTLLAKL 58 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I P+I + + DGT K+LLR IETV + T+CVS+QVGC Sbjct: 59 EEQFYIAAPKIERRQEAKDGTVKYLLRM-----ADGNCIETVVMRYHYGNTVCVSTQVGC 113 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC + VRNL A EI ++ A+ +G+ +IS+IV+ Sbjct: 114 RMGCRFCASTQAGRVRNLEAGEICSEIYTAQKDIGE-----------------RISHIVL 156 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEPL NFD V + L S G++ R I+LST G VP I ++ E+ + + L++SL Sbjct: 157 MGIGEPLDNFDEVMRFLENISSPEGVNIGMRNISLSTCGLVPKIDQLAEKKLQLTLSVSL 216 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +N++R+ ++P+N YP+E+L+ A R Y + RR++FEY M++G+NDS A L Sbjct: 217 HAPNNEIRSGMMPVNDAYPVEVLMPAVRRYQE-TTGRRVSFEYSMVRGVNDSDACARQLA 275 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +++G+ A +NLIP NP G Y +D ++ F + ++ G ++ +R G +I AACG Sbjct: 276 DLIRGMGAHVNLIPINPVDGSPYSATDAANVQRFQKKLESLGVNATVRRRLGSEISAACG 335 Query: 364 QLK 366 QL+ Sbjct: 336 QLR 338 >gi|111658342|ref|ZP_01409030.1| hypothetical protein SpneT_02000482 [Streptococcus pneumoniae TIGR4] Length = 349 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 122/362 (33%), Positives = 204/362 (56%), Gaps = 26/362 (7%) Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76 ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN F + + Sbjct: 1 MQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLKQR 56 Query: 77 DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136 + S DGT K+L P + IETV + + ++CV++QVGC++ C+FC +G Sbjct: 57 IVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCNIGCTFCASGLI 111 Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196 K R+L EI+ Q++L + + +IS+IV+MG+GEP N++N Sbjct: 112 KKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERISHIVVMGIGEPFDNYNN 159 Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILV 255 V +D G++ R IT+STSG I +E + V LA+SLHA +N+LR+ ++ Sbjct: 160 VLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVSLHAPNNELRSSIM 219 Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKI 313 INR +P+E L A +Y +N R+TFEY+ML +ND AL L ++LK I + + Sbjct: 220 KINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELTELLKNIKKLSYV 278 Query: 314 NLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRI 372 NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AACGQL+S + + Sbjct: 279 NLIPYNPVSEHDQYSRSPKECVLAFYDTLKKKGVNCVVRQEHGTDIDAACGQLRSNTMKR 338 Query: 373 PK 374 + Sbjct: 339 DR 340 >gi|331004330|ref|ZP_08327805.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae oral taxon 107 str. F0167] gi|330411396|gb|EGG90811.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae oral taxon 107 str. F0167] Length = 346 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 124/370 (33%), Positives = 206/370 (55%), Gaps = 29/370 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + M EEL+ + ++G R Q+++W++ I F S++S+ R L + Sbjct: 2 TDIKSMDLEELKTFVKELG----EAEFRAKQLFEWLHKSLIDSFDECSNLSKAFREKLKE 57 Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 S+ E ++ S D T+K+L I IE+V + + ++C+SSQVGC Sbjct: 58 VASLTGMEAIEVFESKIDDTKKYLFALEDGNI-----IESVRMKYEHGNSVCISSQVGCR 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC + LVRNL+ E+L QV + LLG+ ++SNIV+M Sbjct: 113 MGCKFCASTLDGLVRNLSVSEMLDQVYKIQKLLGE-----------------RVSNIVVM 155 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G GEP+ N+DN+ K + I S MGL+ S+R IT+ST G VP I + +E + + LA+SLH Sbjct: 156 GSGEPMDNYDNIVKFVKIISSDMGLNISQRNITVSTCGIVPKIRELADEGLSITLALSLH 215 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++++R ++P+ KY L+ +I AC +Y + R+++EY ++ GIND+ ++A+NL+K Sbjct: 216 APNDEIRKTIMPVANKYALKDVISACDYYFKKTGR-RVSYEYSLVAGINDNIKEAMNLVK 274 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 ++ G INLIP NP ++ SD+ I F + +++ G ++ +R G DI ACGQ Sbjct: 275 LVNGRNIHINLIPVNPIKERDFKQSDKLKIKEFKDFLEKKGVNATVRREMGRDIDGACGQ 334 Query: 365 LKSLSKRIPK 374 L+ + + Sbjct: 335 LRRRFIQSER 344 >gi|150390541|ref|YP_001320590.1| radical SAM protein [Alkaliphilus metalliredigens QYMF] gi|205829711|sp|A6TRW3|RLMN_ALKMQ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|149950403|gb|ABR48931.1| radical SAM enzyme, Cfr family [Alkaliphilus metalliredigens QYMF] Length = 352 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 133/367 (36%), Positives = 204/367 (55%), Gaps = 30/367 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K L+ + EE+E L+IG + R Q ++W+ +GI+ ++ M+++S+++ Sbjct: 1 MDKVDLLSLTMEEMESLFLEIG----EKKFRAKQAFQWV-NKGIKQYEEMTNLSKKLIKQ 55 Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L++ I + I ++ +S DGT K+L I IE V + K T C+S+QV Sbjct: 56 LSEETRITHNRIEEKFVSKIDGTVKYLFLLDDGHI-----IEGVLMKYKHGFTACISTQV 110 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC++ C FC + T L+RNL A E++ Q+LL + G+ +ISNI Sbjct: 111 GCAMGCQFCASTTGGLIRNLRAGEMIDQILLMQQDQGE-----------------RISNI 153 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241 V+MG GEPL N+D + L I +D GL+ R ITLST G VP I ++G +I + LAI Sbjct: 154 VLMGSGEPLHNYDETIRFLKIVNDPEGLNIGNRHITLSTCGLVPEIKKLGALQIPINLAI 213 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++ LR +PI +KY ++ LI +C Y +N RITFEY +++ +ND ++A Sbjct: 214 SLHAPNDQLRKQTMPIAQKYTIDQLIQSCYDYLENNNR-RITFEYALIEDVNDGEKEAHE 272 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L K+LKG+ +NLIP NP Y S + F + +K +G + IR G DI A Sbjct: 273 LSKLLKGLLCHVNLIPINPIEERTYQKSKDSQVKKFQQILKSNGIEATIRREMGTDIQGA 332 Query: 362 CGQLKSL 368 CGQL+ Sbjct: 333 CGQLRRK 339 >gi|260063739|ref|YP_003196819.1| radical SAM enzyme, Cfr family protein [Robiginitalea biformata HTCC2501] gi|88783184|gb|EAR14357.1| radical SAM enzyme, Cfr family protein [Robiginitalea biformata HTCC2501] Length = 347 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 128/369 (34%), Positives = 199/369 (53%), Gaps = 24/369 (6%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M K+ + + RE+L + G+ R +Q+++W++ +G DF M+++S ++ Sbjct: 1 MKSEAKKDIRALSREQLRDFFESRGMEA----FRGNQVYEWLWKKGAHDFDAMTNLSLDL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L F+I + E+ + S DGT K +R + +E+V IP ++R T CVSS Sbjct: 57 REQLAAEFTINHIEVDRMQRSADGTVKNAVRLHDGLV-----VESVLIPTENRTTACVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGCSL C FC T K +RNL +EI QV++ + GR +S Sbjct: 112 QVGCSLDCKFCATARLKRMRNLNPDEIYDQVVVIDRQSRLY-------------FGRPLS 158 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VML 239 NIV MGMGEPL N+ N+ K++ + GL S RRIT+STSG I R+ EE L Sbjct: 159 NIVFMGMGEPLMNYPNMMKAIDKITSEEGLGMSPRRITVSTSGVPKMIRRMAEEGPRFNL 218 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH+ + R+ ++P N +PL+ L DA ++ + R+T+EYV+ +GIND P D Sbjct: 219 AVSLHSAIDSTRSTIMPFNETFPLDDLRDAIVYWYEKT-GNRVTYEYVVWEGINDGPEDV 277 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L+ + P K+NLI +NP + + + + + ++ +G + +R RG DI Sbjct: 278 AALLAFCRAAPCKVNLIEYNPIGDDAFRQASEPALQAYINALEGAGITVTVRRSRGKDID 337 Query: 360 AACGQLKSL 368 AACGQL + Sbjct: 338 AACGQLANK 346 >gi|300726533|ref|ZP_07059979.1| radical SAM enzyme, Cfr family [Prevotella bryantii B14] gi|299776261|gb|EFI72825.1| radical SAM enzyme, Cfr family [Prevotella bryantii B14] Length = 349 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 136/379 (35%), Positives = 208/379 (54%), Gaps = 31/379 (8%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN L+K+SL+G+ +EL++ +G+P QI KW+Y ++ M+++S+ Sbjct: 1 MN-LEKKSLLGLTLDELKDVAKSLGMPA----FTGGQIAKWLYEYHVKSIDEMTNLSKAN 55 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L + ++I E +D + S DGT K+L +ETV+IP++ R TLCVSS Sbjct: 56 RQKLEEQYTIGCAEAIDAQHSVDGTIKYLF-----PTANGKFVETVFIPDEDRATLCVSS 110 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC + C FC TG Q +L+A +IL Q+ + K++ Sbjct: 111 QVGCKMNCLFCQTGKQGFEGSLSAADILNQIYSLPEVD-------------------KLT 151 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 NIV MG GEP+ N DNV ++ I + S G ++S +RIT+S+ G + R EE +A Sbjct: 152 NIVFMGQGEPMDNLDNVLRATDILTASYGWAWSPKRITVSSVGVRNKLKRFLEESQCHVA 211 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 IS+H+ + R L+P R +E ++D R+Y S+ RR+TFEY++ G+NDS A Sbjct: 212 ISMHSPIPEQRAELMPAQRGMSIEEVVDLLRNY-DFSHQRRLTFEYIVFGGVNDSTTHAR 270 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 +IK+LKG+ +INLI F+ P +D+K + F + + G + IR RG DI A Sbjct: 271 EIIKLLKGLDCRINLIRFHQIPEVALHGADEKTMENFRDYLTNHGIHTTIRASRGQDIFA 330 Query: 361 ACGQLKSLSKRIPKVPRQE 379 ACG L S SK+I K+ + Sbjct: 331 ACGLL-STSKKIGKIRHDQ 348 >gi|154497983|ref|ZP_02036361.1| hypothetical protein BACCAP_01963 [Bacteroides capillosus ATCC 29799] gi|150272973|gb|EDN00130.1| hypothetical protein BACCAP_01963 [Bacteroides capillosus ATCC 29799] Length = 340 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 120/367 (32%), Positives = 192/367 (52%), Gaps = 32/367 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + M + E+ + ++G P R Q+++W++ RG F M+++S+ +R L+ Sbjct: 2 TDIKSMNQAEMADYFRELGEPA----FRAKQVFQWLH-RGAVSFDDMTNLSKGLREKLSG 56 Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I P + +++S DGT K+L + IETV + T+C+SSQVGC Sbjct: 57 SCYITAPAVERKQVSAQDGTIKYLWKLRD-----GNCIETVLMRYHHGNTVCISSQVGCR 111 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC + VRNLT E+L QVL + G ISNIV+M Sbjct: 112 MGCAFCASTLGGKVRNLTPSEMLDQVLFTQ-----------------LDSGVPISNIVLM 154 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244 G+GEPL NFD V + L + + GL+ R I+LST G V I ++ + + + L++SLH Sbjct: 155 GIGEPLDNFDTVMRFLELVNHPDGLNIGMRHISLSTCGLVEKIDKLADLRLQLTLSVSLH 214 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++ R+ ++P+N+ +E L +CR Y + RI++EY M+ G+NDS A L K Sbjct: 215 APDDETRSRIMPVNKAVGVERLFRSCRQYFEKTGR-RISYEYAMIDGVNDSDWQADLLAK 273 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 LKG P +NLIP N S + + F + +++ G + +R G DI A+CGQ Sbjct: 274 HLKGTPGHVNLIPLNEVKESPLKPS--RRVEAFQKRLEQHGITVTVRRKLGGDIDASCGQ 331 Query: 365 LKSLSKR 371 L+ + + Sbjct: 332 LRRKAMQ 338 >gi|148985883|ref|ZP_01818977.1| hypothetical protein CGSSp3BS71_00907 [Streptococcus pneumoniae SP3-BS71] gi|147922029|gb|EDK73153.1| hypothetical protein CGSSp3BS71_00907 [Streptococcus pneumoniae SP3-BS71] gi|301799783|emb|CBW32352.1| Radical SAM protein [Streptococcus pneumoniae OXC141] Length = 361 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 120/373 (32%), Positives = 207/373 (55%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IE V + + ++CV++QVGC+ Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IEIVLMCQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + ++++IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVNHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N++NV +D G++ R IT+STSG I +E + V LA+SLH Sbjct: 161 GIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L + Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGGNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+ + + + Sbjct: 340 CGQLRFNTMKRDR 352 >gi|225569231|ref|ZP_03778256.1| hypothetical protein CLOHYLEM_05313 [Clostridium hylemonae DSM 15053] gi|225162030|gb|EEG74649.1| hypothetical protein CLOHYLEM_05313 [Clostridium hylemonae DSM 15053] Length = 356 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 122/367 (33%), Positives = 198/367 (53%), Gaps = 29/367 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K+ + +L+ + +G R+ QI++W++VR F M+++S+++R Sbjct: 1 MIKKDICSYDHGQLKNEIEAMG----EKSFRSRQIYEWLHVRLADSFDEMTNLSKKLREQ 56 Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L+ + I + + +IS D T K+L R +E+V + ++C+SSQ Sbjct: 57 LSAEYEIREVTLTERQISSVDPTEKFLFRLC-----EGNMVESVLMRYSYGNSVCISSQA 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC + L+RNLT E+L Q+ + L+G+ +ISN+ Sbjct: 112 GCRMGCRFCASTLDGLMRNLTPSEMLRQIYQIQKLIGE-----------------RISNV 154 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 V+MG GEPL N+DN + + + SD GL+ S+R IT ST G VPN+ R+ EE + + LA+ Sbjct: 155 VVMGTGEPLDNYDNFLQFIRMVSDEHGLNISQRNITASTCGIVPNMRRLAEEDLQITLAL 214 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH + + R L+P+ KY L +++AC +Y + RITFEY +++G+ND P D Sbjct: 215 SLHGSTQEKRKALMPVANKYELAEVLEACDYYFEKTGR-RITFEYSLVQGVNDQPEDVRE 273 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L +LK +NLIP NP ++ D K+ F ++++G + IR RG DI A Sbjct: 274 LTALLKRRNCHLNLIPVNPIKERNFVRPDSKNAHEFKNKLEKNGINVTIRRERGSDIDGA 333 Query: 362 CGQLKSL 368 CGQL+ Sbjct: 334 CGQLRRR 340 >gi|256830852|ref|YP_003159580.1| Cfr family radical SAM protein [Desulfomicrobium baculatum DSM 4028] gi|256580028|gb|ACU91164.1| radical SAM enzyme, Cfr family [Desulfomicrobium baculatum DSM 4028] Length = 360 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 142/379 (37%), Positives = 223/379 (58%), Gaps = 23/379 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +++ + ELEEA+ +G H R Q+W+W++ +G+R+F M++++++ R L + Sbjct: 2 RNILELTCPELEEAVQAMG----HQSFRARQLWQWLWRKGVREFSAMTNLARDFREQLMR 57 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 +++ +PE+ + + S DGT K LLR + +ETV IP+K R T C+S Q+GC + Sbjct: 58 EWALDWPEVHEVQTSSDGTVKLLLRLADGAL-----VETVLIPDKERYTQCLSCQIGCPM 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC TG RN+T EI QVL+AR L +G ++ N+V MG Sbjct: 113 GCTFCSTGLMGFSRNMTGGEIAAQVLVARDYLR------------AHGLGDEVKNLVYMG 160 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N+D V++SL I S++ GL FS+RRITLST + G E + AISLHA Sbjct: 161 MGEPLTNWDEVRRSLQILSNAEGLEFSRRRITLSTCAIKGKMDVFGIEGLALPAISLHAP 220 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 + ++R L+P ++P+E LI A + L R+T EY+++KG+NDS + A L+++L Sbjct: 221 TQEIRESLMPGAARWPIEELIAALQGM-ELKARERVTIEYILIKGVNDSLQHARQLVRLL 279 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + KINLI +NP PG EY D++ F E +++ G++ +R +G DI AACGQLK Sbjct: 280 SHLKCKINLIAYNPGPGIEYAAPAPGDVLAFEELLRKKGFTVTLRKSKGQDIAAACGQLK 339 Query: 367 SLSK-RIPKVPRQEMQITG 384 + ++ R+ +E G Sbjct: 340 TEAQGRMNSTTSKEGPNDG 358 >gi|160915438|ref|ZP_02077649.1| hypothetical protein EUBDOL_01446 [Eubacterium dolichum DSM 3991] gi|158432558|gb|EDP10847.1| hypothetical protein EUBDOL_01446 [Eubacterium dolichum DSM 3991] Length = 347 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 133/368 (36%), Positives = 202/368 (54%), Gaps = 25/368 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +SL +E+ E L G + R QI++W+Y + + MSD+S E R +L++ Sbjct: 2 KSLYDFNYDEMGEMALAHGW----KKFRGHQIFQWLYRKRVASIDEMSDLSLETRRVLSE 57 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 ++ + E+ D+++S DGT K+L + IE+V + ++CV+SQVGC++ Sbjct: 58 NYELTDLELRDKQVSSDGTTKYLFALKDGSL-----IESVLMQFDYGKSICVTSQVGCNM 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC +G K R+LT+ E++ QVL + + + ++S+IV+MG Sbjct: 113 ACAFCASGLTKKKRDLTSGEMVSQVLYVQR--------------DLDAQKERLSHIVVMG 158 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHA 245 GEP N+D+V L + GL R IT+ST G VP I E LAISLHA Sbjct: 159 TGEPFDNYDHVMNFLRTVNHDRGLGIGARHITISTCGVVPRIYDFSKEHTQYNLAISLHA 218 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 SN+LRN L+PIN+ YPLE L+ A R+Y +N R+TFEY++LKG+ND + L K+ Sbjct: 219 PSNELRNQLMPINKAYPLEELMQAIRYYTSENNR-RLTFEYILLKGVNDGMKQVNELAKL 277 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG+ A +NLIP+N +L ++ + F + + + G IR G DI AACGQL Sbjct: 278 LKGLNAYVNLIPYNAVDENGFLGVKYEEAMVFYDALMKRGIRCTIRKEHGADIDAACGQL 337 Query: 366 KSLSKRIP 373 + R Sbjct: 338 RVKHLRKE 345 >gi|220905656|ref|YP_002480967.1| radical SAM enzyme, Cfr family [Cyanothece sp. PCC 7425] gi|219862267|gb|ACL42606.1| radical SAM enzyme, Cfr family [Cyanothece sp. PCC 7425] Length = 367 Score = 403 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 126/364 (34%), Positives = 190/364 (52%), Gaps = 31/364 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L+G + EL E + +G P R Q+ +W+Y +G+R +S + R + + Sbjct: 27 PPLLGASQAELTEWITALGQPA----YRGQQLHQWLYQKGVRSLTEISVFPKAWRQQVAE 82 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + ++ + DGT K+LLR I IETV IP R T+CVSSQVGC + Sbjct: 83 VA-VGRSQLHYRSQAQDGTVKYLLRLDDGQI-----IETVGIPSNRRLTVCVSSQVGCPM 136 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG R+L EI+ QVL + G+++SN+V MG Sbjct: 137 GCDFCATGKGGFRRHLDRHEIVDQVLTVQ-----------------ADFGQRVSNVVFMG 179 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHA 245 MGEPL N + V +++ + +G +R +T+ST G I R+ + LA+SLHA Sbjct: 180 MGEPLLNLEAVLEAVRCLNQDVG--IGQRFLTISTVGIPGQIRRLANHHLQATLAVSLHA 237 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + LR L+P R YPLE L+ CR Y L+ R++FEY++L G+ND P+ AL L + Sbjct: 238 SNQPLRAQLIPSARHYPLENLLQECRDYVQLTGR-RVSFEYILLGGLNDLPQHALELAQH 296 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G + +NLIP+NP +Y + + F + ++ ++ IR RGLD AACGQL Sbjct: 297 LRGFQSHVNLIPYNPISEVDYQRPSPQRMQHFLQLLQEHHIAASIRRSRGLDQNAACGQL 356 Query: 366 KSLS 369 ++ Sbjct: 357 RANQ 360 >gi|224370186|ref|YP_002604350.1| putative SAM-dependent methyltransferase [Desulfobacterium autotrophicum HRM2] gi|223692903|gb|ACN16186.1| putative SAM-dependent methyltransferase [Desulfobacterium autotrophicum HRM2] Length = 345 Score = 403 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 137/364 (37%), Positives = 206/364 (56%), Gaps = 23/364 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + + R+EL R Q++KW+Y+R + F M+DI +++R L + Sbjct: 2 KEITDFTRQELTAWFENN----NERSFRGGQVFKWLYLRQAQTFDEMTDIGKDLRQRLKE 57 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 +F++ +IS DGT K L R IE V IPEK TLC+SSQ GC+ Sbjct: 58 NFTLSAMVFDRSEISRDGTEKLLFRLHDNAY-----IEAVLIPEKDHFTLCISSQAGCAQ 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC T RNLT EI+ Q+ A+++ + R +SNIV MG Sbjct: 113 GCKFCLTAKGGFTRNLTTGEIIGQIRTAKTV------------LAKRKAQRPLSNIVFMG 160 Query: 187 MGEPLCNFDNVKKSLSIASD-SMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 MGEPL N+D V ++LSI +D GL S RRITLST G VP I R+G + V LA+SL+A Sbjct: 161 MGEPLANYDTVVRALSIMTDSDYGLKLSSRRITLSTCGLVPEILRLGNDTEVNLAVSLNA 220 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +++ R++L+PINR+YP+ L+ AC ++ + ++ITFEY+++K +ND+ DA LI + Sbjct: 221 TTDETRSMLMPINRRYPMHELLKACTNFQ-MKPRKKITFEYILIKNVNDTMDDAKRLITL 279 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L I AK+NLIPFN ++ ++ I+ F + + ++ +R +G DI AACGQL Sbjct: 280 LLPIRAKVNLIPFNEHDQSDFKRPSKESILAFLQMLLDHNLTAMVRKSKGDDISAACGQL 339 Query: 366 KSLS 369 ++ + Sbjct: 340 RAKA 343 >gi|86131691|ref|ZP_01050288.1| radical SAM superfamily protein [Dokdonia donghaensis MED134] gi|85817513|gb|EAQ38687.1| radical SAM superfamily protein [Dokdonia donghaensis MED134] Length = 346 Score = 403 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 131/366 (35%), Positives = 207/366 (56%), Gaps = 24/366 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K+ + + +E+L + G R +Q+++W++ +G DF M++IS+E R LL Sbjct: 4 EKKDIRKLTKEDLRAFFVDQGDKA----FRGNQVYEWLWQKGAHDFVDMTNISKETRILL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 ++HF I + + + S DGT K ++ + +E+V IP KSR T CVSSQVGC Sbjct: 60 DEHFVINHIRVDQMQRSSDGTIKNAVKLHD-----GLTVESVLIPTKSRTTACVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 SL C FC T K +RNL +EI+ QV++ I+ R +SNIV Sbjct: 115 SLNCKFCATARLKRMRNLNPDEIVDQVVV-------------IDRQSKLYHDRPLSNIVF 161 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISL 243 MGMGEPL N++NV K++ +D GL S +RIT+STSG I ++ EE+ LA+SL Sbjct: 162 MGMGEPLMNYNNVIKAIDKITDPEGLGMSPKRITVSTSGVPKIIKKMADEEVKFNLAVSL 221 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ +D+R ++P N + PL L +A ++ + RIT+EYV+ GIND D L+ Sbjct: 222 HSALDDVRTEIMPFNEQMPLADLKEALIYWYEKTGK-RITYEYVVWDGINDRQIDIDALL 280 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K +P+K+N+I +NP ++ ++ + I + + ++ +G + +R RG DI AACG Sbjct: 281 DFCKAVPSKVNIIEYNPIDDGQFQQANPQAIDRYVDVLEANGVTVTVRRSRGKDIDAACG 340 Query: 364 QLKSLS 369 QL + Sbjct: 341 QLANKQ 346 >gi|256819328|ref|YP_003140607.1| radical SAM enzyme, Cfr family [Capnocytophaga ochracea DSM 7271] gi|256580911|gb|ACU92046.1| radical SAM enzyme, Cfr family [Capnocytophaga ochracea DSM 7271] Length = 350 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 134/373 (35%), Positives = 205/373 (54%), Gaps = 24/373 (6%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 +K + + +EEL G R +Q+++W++ +G+ F+ M+ + + R Sbjct: 1 MQQKRDIRALTKEELRAFFESNG----DKPFRGNQVYEWLWQKGVHTFEEMTSLPKATRE 56 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 +L++HFSI + ++ + S DGT K +R + +E+V IP +R T CVSSQV Sbjct: 57 MLSEHFSINHIKVDVMQRSNDGTIKNAVRLHDGLL-----VESVLIPTDTRTTACVSSQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GCSL CSFC T K +RNL +EI QV + I+ GR +SNI Sbjct: 112 GCSLNCSFCATARLKRMRNLLPDEIFDQV-------------KVIDEQSRAFFGRPLSNI 158 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241 V MGMGEPL N++NV K++ + GL S +RITLSTSG I ++ + E+ LA+ Sbjct: 159 VFMGMGEPLMNYNNVLKAIDKITSPEGLGMSPKRITLSTSGIPKLIKKMADDEVKFKLAV 218 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH+ + +R ++P N ++PLE L +A ++ + RIT+EYV+ KGIND +D Sbjct: 219 SLHSAISSVRTGIMPFNEQFPLEELREALAYWYQKT-KNRITYEYVVWKGINDQKKDVEA 277 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 LIK K P+K+NLI +NP + +D K + + ++ +G + +R RG DI AA Sbjct: 278 LIKFCKFAPSKVNLIEYNPIDDGAFQQADPKALELYQTMLEEAGITVTVRHSRGKDIDAA 337 Query: 362 CGQLKSLSKRIPK 374 CGQL + K Sbjct: 338 CGQLANKKVNSEK 350 >gi|258515524|ref|YP_003191746.1| radical SAM enzyme, Cfr family [Desulfotomaculum acetoxidans DSM 771] gi|257779229|gb|ACV63123.1| radical SAM enzyme, Cfr family [Desulfotomaculum acetoxidans DSM 771] Length = 349 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 123/373 (32%), Positives = 202/373 (54%), Gaps = 29/373 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++ L+ + ++E +L+ +P + R QI +W++ +G+ F M+++ ++R Sbjct: 1 MESTGLMDLTLPQIENWVLQEAMP----KFRARQIAEWMFQKGVDSFDQMTNLPLDLRKK 56 Query: 64 LNQHFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 LNQ + +++ +++S GT K+L + +ETV + + ++CVSSQV Sbjct: 57 LNQTAYLEDLQVIKKQVSAQTGTVKYLFKLKD-----GQAVETVLMRQVYGLSVCVSSQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC ++C C + LVRNL+A EI QV+ + +IS++ Sbjct: 112 GCRMSCRLCASTLSGLVRNLSAGEIYAQVMSVQK-----------------EQSSRISHV 154 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 V+MG GEPL NF + ++ + GL+ R ITLST G VP I + E+ + + LA+ Sbjct: 155 VIMGSGEPLDNFQHTLAFMTNINADYGLNIGYRHITLSTCGLVPEILALAEKKLPLTLAV 214 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA +N LR+ +VP+NRKYPL++L+ AC+ Y L+ R++FEY ++KG+ND+ A Sbjct: 215 SLHAPNNKLRDSIVPVNRKYPLQVLLKACKDYTKLTGR-RVSFEYALIKGLNDTTVCAQE 273 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L +LK INLIP NP P + ++I F + +++ G +R G DI AA Sbjct: 274 LADLLKNFSCHINLIPVNPVPERGLQRTPVQNIQRFKDILEKEGLKVTVRREMGSDIDAA 333 Query: 362 CGQLKSLSKRIPK 374 CGQL+ K Sbjct: 334 CGQLRHSFVDRRK 346 >gi|284051696|ref|ZP_06381906.1| radical SAM protein [Arthrospira platensis str. Paraca] gi|291570690|dbj|BAI92962.1| ribosomal RNA large subunit methyltransferase N [Arthrospira platensis NIES-39] Length = 344 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 127/365 (34%), Positives = 188/365 (51%), Gaps = 31/365 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + L+G EL + + + G P R Q+++WIY +G + + ++ ++ R L Sbjct: 9 KPLLGTSLPELTDWVQQQGQPA----YRGKQLYQWIYQKGAKSLEEITVFPKQWRSQLA- 63 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + I ++ DGT K+LL+ I IETV IP R T+CVSSQVGC + Sbjct: 64 TIPVGRSTIHYRAVASDGTIKYLLKLSDGQI-----IETVGIPTHDRLTVCVSSQVGCPM 118 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG RNL EI+ QVL + R++S+IV MG Sbjct: 119 ACDFCATGKGGFFRNLETHEIVDQVLTVQE-----------------DFQRRVSHIVFMG 161 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245 MGEPL N N +++ + + +R ITLST G I ++ E ++ + LA+SLHA Sbjct: 162 MGEPLLNTQNAIAAITCLNRD--IGIGQRMITLSTVGIPNRIRQLAEYQLQITLAVSLHA 219 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + LR L+P + YPLE LI CR Y L+ R++FEYVML G+ND P A L + Sbjct: 220 SNQTLREQLIPSAKTYPLEALISECRDYVKLTGR-RVSFEYVMLAGVNDLPTHAAELASL 278 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 ++G + +NLIP+NP +Y I F + ++ + +R RGLD AACGQL Sbjct: 279 MRGFQSHVNLIPYNPINEVDYQRPSPSQIQGFVKELEERRVAVSVRYSRGLDADAACGQL 338 Query: 366 KSLSK 370 ++ + Sbjct: 339 RASQE 343 >gi|315224773|ref|ZP_07866595.1| cfr family radical SAM enzyme [Capnocytophaga ochracea F0287] gi|314945266|gb|EFS97293.1| cfr family radical SAM enzyme [Capnocytophaga ochracea F0287] Length = 350 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 133/373 (35%), Positives = 205/373 (54%), Gaps = 24/373 (6%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 +K + + ++EL G R +Q+++W++ +G+ F+ M+ + + R Sbjct: 1 MQQKRDIRALTKDELRAFFESNG----DKPFRGNQVYEWLWQKGVHTFEEMTSLPKATRE 56 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 +L++HFSI + ++ + S DGT K +R + +E+V IP +R T CVSSQV Sbjct: 57 MLSEHFSINHIKVDVMQRSNDGTIKNAVRLHDGLL-----VESVLIPTDTRTTACVSSQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GCSL CSFC T K +RNL +EI QV + I+ GR +SNI Sbjct: 112 GCSLNCSFCATARLKRMRNLLPDEIFDQV-------------KVIDEQSRAFFGRPLSNI 158 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241 V MGMGEPL N++NV K++ + GL S +RITLSTSG I ++ + E+ LA+ Sbjct: 159 VFMGMGEPLMNYNNVLKAIDKITSPEGLGMSPKRITLSTSGIPKLIKKMADDEVKFKLAV 218 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH+ + +R ++P N ++PLE L +A ++ + RIT+EYV+ KGIND +D Sbjct: 219 SLHSAISSVRTGIMPFNEQFPLEELREALAYWYQKT-KNRITYEYVVWKGINDQKKDVEA 277 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 LIK K P+K+NLI +NP + +D K + + ++ +G + +R RG DI AA Sbjct: 278 LIKFCKFAPSKVNLIEYNPIDDGAFQQADPKALELYQTMLEEAGITVTVRHSRGKDIDAA 337 Query: 362 CGQLKSLSKRIPK 374 CGQL + K Sbjct: 338 CGQLANKKVNSEK 350 >gi|28210911|ref|NP_781855.1| ribosomal RNA large subunit methyltransferase N [Clostridium tetani E88] gi|75542526|sp|Q895P8|RLMN_CLOTE RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|28203350|gb|AAO35792.1| florfenicol resistance protein [Clostridium tetani E88] Length = 349 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 129/367 (35%), Positives = 203/367 (55%), Gaps = 30/367 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+ + E+L++ +++ + R Q+ W+Y +G+ +F+ M +I + + + L + Sbjct: 5 INLLDLSLEDLKKWMIEN----KEKEFRAKQVLDWVY-KGVYNFEAMKNIPKVITNKLQE 59 Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +F + P +V + +S D T K+L ++ I IE+V + K T+CVS+QVGC Sbjct: 60 NFYLSVPSVVQKYVSKDESTVKFLFKYNDGNI-----IESVVMKYKHGNTICVSTQVGCK 114 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC + +VR+L+ EIL QVL A+ G+ +ISNIVMM Sbjct: 115 MGCTFCASTIGGIVRSLSHGEILGQVLKAQEETGE-----------------RISNIVMM 157 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G GEPL N+DN + + + GL+ +R ITLST G VP I ++ EE + + LAISLH Sbjct: 158 GSGEPLDNYDNSLNFIRMVNAENGLNIGQRHITLSTCGIVPKIRQLAEENLQITLAISLH 217 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++++R +PI Y +E LI+AC +Y +N RITFEY ++ +ND A L Sbjct: 218 APNDNIRRKTMPIASVYSVEELIEACNYYINKTNR-RITFEYALVSNLNDKEVHAEELAT 276 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKG+ +NLIP N ++ S I FS + +SG + IR G DI AACGQ Sbjct: 277 LLKGMLCHVNLIPVNKIDEKDFKSSSTNRIKNFSNILLKSGIQTTIRREMGSDINAACGQ 336 Query: 365 LKSLSKR 371 L+ + Sbjct: 337 LRRRYVK 343 >gi|154175427|ref|YP_001407355.1| ribosomal RNA large subunit methyltransferase N [Campylobacter curvus 525.92] gi|205829690|sp|A7GVW3|RLMN_CAMC5 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|112802451|gb|EAT99795.1| radical SAM enzyme, Cfr family [Campylobacter curvus 525.92] Length = 371 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 143/380 (37%), Positives = 211/380 (55%), Gaps = 42/380 (11%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++L+ ELE L + R QI++WIY + +F M ++ +++R L Q Sbjct: 2 KNLLDYTLSELEAIL--------SPKFRAKQIYEWIYKKNAENFDEMLNLPKDMRTNLAQ 53 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------------R 113 F V + S DG+ K+L + IE+V +P K R Sbjct: 54 EFYFDPLYCVKFEESSDGSIKYLF-----ALKDGNTIESVLLPMKEVEVDEGGNISRHAR 108 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 T+CVSSQVGC + C FC T L RNL+ EI+ Q+L + Sbjct: 109 YTICVSSQVGCKMGCLFCLTAKGGLKRNLSPGEIVGQILWIKKTN--------------H 154 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233 + N+V MGMGEPL N NV K++ I + GL+ S RR T+STSG I ++GE Sbjct: 155 IPYERRVNVVYMGMGEPLDNLANVAKAIQILKEPDGLAISPRRQTVSTSGLGAQIKKLGE 214 Query: 234 -EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 ++GV+LAISLHAV+N+LR+ L+P+N+ Y +E ++DA R +P + +R+ FEY++++G+ Sbjct: 215 MDLGVLLAISLHAVTNELRSKLMPVNKAYNIEAVMDAVRGFP-IDMRKRVMFEYLVIRGM 273 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 NDS +DA L+K+L GI AK+NLI FNP G EY + D++ F E ++ G + IR Sbjct: 274 NDSVKDAKTLVKLLHGIKAKVNLIYFNPHEGSEYGRPELADMLEFQEYLRAHGVTCTIRQ 333 Query: 353 PRGLDILAACGQLKSLSKRI 372 +GLDI AACGQLK S+ + Sbjct: 334 SKGLDISAACGQLKQRSQNL 353 >gi|15895003|ref|NP_348352.1| Fe-S-cluster redox protein [Clostridium acetobutylicum ATCC 824] gi|81620134|sp|Q97IC4|RLMN_CLOAB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|15024693|gb|AAK79692.1|AE007682_2 Predicted Fe-S-cluster redox enzyme, YLON B.subtilis ortholog [Clostridium acetobutylicum ATCC 824] gi|325509140|gb|ADZ20776.1| Fe-S-cluster redox enzyme [Clostridium acetobutylicum EA 2018] Length = 345 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 130/362 (35%), Positives = 189/362 (52%), Gaps = 30/362 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 E+++ EL++ + K G R Q + WIY G DF+ M ++ Q R L + Sbjct: 2 ENILDYNEAELKQWMDKNG----EKTFRAKQFFDWIY-NGTFDFKDMKNLPQSTRERLEK 56 Query: 67 HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +F I P +V S G T K+L R+ I IE V + ++C+S+QVGC Sbjct: 57 NFYIGMPSVVKRLNSKKGDTVKFLFRYNDGNI-----IECVVMKYDYGNSICISTQVGCR 111 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + CSFC + VR+LT+ EIL Q+L A+ +G+ +ISNIV+M Sbjct: 112 MGCSFCASTIGGRVRDLTSGEILAQILKAQKEIGE-----------------RISNIVLM 154 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLH 244 G GEPL N+DNV K + I + GL+ +R ITLST G VP I + E + + LAISLH Sbjct: 155 GSGEPLDNYDNVIKFIRIVNSEKGLNIGQRHITLSTCGIVPRIYDLMKENLQITLAISLH 214 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++ R ++PI +Y + +ID C+ Y + RITFEY ++K +ND A L + Sbjct: 215 ASDDETRKKIMPIANRYSISEIIDCCKKYSDFTGR-RITFEYSLVKDVNDDKESAKKLGE 273 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L G+ +NLIP N Y + I F + + + S IR G DI AACGQ Sbjct: 274 LLSGMLCHVNLIPVNTVNETSYEKPESSKIKKFCDTLLKYKIESTIRKEMGADINAACGQ 333 Query: 365 LK 366 L+ Sbjct: 334 LR 335 >gi|126700199|ref|YP_001089096.1| radical SAM protein [Clostridium difficile 630] gi|255101744|ref|ZP_05330721.1| radical SAM protein [Clostridium difficile QCD-63q42] gi|255307613|ref|ZP_05351784.1| radical SAM protein [Clostridium difficile ATCC 43255] gi|123066578|sp|Q182S0|RLMN_CLOD6 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|115251636|emb|CAJ69469.1| putative radical SAM-family protein [Clostridium difficile] Length = 343 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 133/368 (36%), Positives = 204/368 (55%), Gaps = 30/368 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK L +EL+E + I R SQI+ WIY +G + F M++I + +R+ L Sbjct: 4 KKIVLKNFTEDELKEFMKTI----DEKPFRGSQIFSWIY-KGAKTFDDMNNIPKSLRNKL 58 Query: 65 NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + I + +I + S D T+K+L I IETV + SR T+CVS+QVG Sbjct: 59 EEVSCIGHIDIELKLESKVDNTKKYLFLLDDGNI-----IETVMMDYDSRVTVCVSNQVG 113 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C+FC + L+RNL EIL QV+ + G+++SN+V Sbjct: 114 CRMGCNFCASTMDGLIRNLEPWEILDQVIKIQE-----------------DTGKRVSNLV 156 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242 +MG GEPL NF+N K+ L I ++ GL+ R ITLST G VP + + + EI + LA+S Sbjct: 157 LMGSGEPLDNFENTKQFLKIINEKNGLNIGYRHITLSTCGIVPKMYELADLEIAINLALS 216 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LH+ ++ R ++P+ Y +E +++ACR+Y +N R+TFEY ++KG+NDS ++A L Sbjct: 217 LHSPYDEERRKIMPVANAYSIEEILNACRYYIKKTNR-RVTFEYSLIKGVNDSEKEAKAL 275 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K+LKG+ +NLIP N EY D+ I F + ++++ + +R G DI AC Sbjct: 276 AKLLKGMLCHVNLIPINKVEEREYEKPDKAFIYKFRDSLEKNNIPATVRMSMGSDISGAC 335 Query: 363 GQLKSLSK 370 GQL+ K Sbjct: 336 GQLRRKYK 343 >gi|302872121|ref|YP_003840757.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor obsidiansis OB47] gi|302574980|gb|ADL42771.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor obsidiansis OB47] Length = 344 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 123/367 (33%), Positives = 191/367 (52%), Gaps = 32/367 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +KK + + +EL++ L IG R SQI++W+Y + D +++ E+R Sbjct: 1 MKKL-IKDLTFDELKKWLENIG----EKPFRASQIFEWLYKKNATDVMQFTNLPLELREK 55 Query: 64 LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + F I +I+ + DG + K+L G IE+V++P + +CVS+QV Sbjct: 56 IGDEFLINSLQILQHQ--SDGESIKFLFEL-----GDKNGIESVFLPYRYGNAICVSTQV 108 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC + VRNL+A E++ Q++ + G ++I+N+ Sbjct: 109 GCRMNCRFCASAIGGFVRNLSAGEMVDQIINVENFTG-----------------KRITNV 151 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241 V+MG GEP N +NV K + I + G + R IT+ST G I R+ + V LAI Sbjct: 152 VLMGSGEPFDNIENVFKFIEIINSKEGKNIGARHITISTVGIAEGIYRLCDFPKQVNLAI 211 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA +N LR+ LVP+N+KYP+E ++ A +Y +N R+TFEY ++ G+NDS A Sbjct: 212 SLHAPNNRLRDKLVPMNKKYPVEDIMKAVDYYIQKTNR-RVTFEYALIDGVNDSIECAEE 270 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++LKG +NLIP NP + ++ I F E ++ IR G I AA Sbjct: 271 LGQMLKGKLVHVNLIPVNPVEEKGFRRPSKEKIKAFFETLRSYQIQVTIRRELGSSISAA 330 Query: 362 CGQLKSL 368 CGQL+ Sbjct: 331 CGQLRRR 337 >gi|209526448|ref|ZP_03274975.1| radical SAM enzyme, Cfr family [Arthrospira maxima CS-328] gi|209493083|gb|EDZ93411.1| radical SAM enzyme, Cfr family [Arthrospira maxima CS-328] Length = 346 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 127/362 (35%), Positives = 188/362 (51%), Gaps = 31/362 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + L+G EL + + + G P R Q+++WIY +G + + ++ ++ R L Sbjct: 9 KPLLGTSLPELTDWVQQQGQPA----YRGKQLYQWIYQKGAKSLEEITVFPKQWRSQLA- 63 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + I ++ DGT K+LL+ I IETV IP R T+CVSSQVGC + Sbjct: 64 TIPVGRSTIHYRAVASDGTIKYLLKLSDGQI-----IETVGIPTHDRLTVCVSSQVGCPM 118 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG RNL EI+ QVL + R++S+IV MG Sbjct: 119 ACDFCATGKGGFFRNLETHEIVDQVLTVQE-----------------DFQRRVSHIVFMG 161 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245 MGEPL N N +++ + + +R ITLST G I ++ E ++ + LA+SLHA Sbjct: 162 MGEPLLNTQNAIAAITCLNRD--IGIGQRMITLSTVGIPNRIRQLAEYQLQITLAVSLHA 219 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + LR L+P + YPLE LI CR Y L+ R++FEYVML G+ND P A L + Sbjct: 220 SNQTLREQLIPSAKTYPLESLISECRDYVKLTGR-RVSFEYVMLSGVNDLPSHATELASL 278 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 ++G + +NLIP+NP +Y I F + +++ + +R RGLD AACGQL Sbjct: 279 MRGFQSHVNLIPYNPINEVDYQRPSPSQIQDFFKELEQRRVAVSVRYSRGLDADAACGQL 338 Query: 366 KS 367 ++ Sbjct: 339 RA 340 >gi|55981906|ref|YP_145203.1| ribosomal RNA large subunit methyltransferase N [Thermus thermophilus HB8] gi|81363686|sp|Q5SGZ3|RLMN_THET8 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|55773319|dbj|BAD71760.1| conserved hypothetical protein [Thermus thermophilus HB8] Length = 355 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 138/366 (37%), Positives = 200/366 (54%), Gaps = 32/366 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + ++ ++ EEL R +QI W+Y +G RDF M+D+ + +R L + Sbjct: 8 KPILELLPEEL-----------PGEGYRRAQIAHWLYAKGARDFSEMTDLPKALREALAR 56 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + + +V S DG+ K+L + E VY+P ++R T+C+S+ VGC Sbjct: 57 EWRLSEFSLVQAFPSQDGSVKYLFTLLD-----GKKTEAVYMPYENRKTVCLSTMVGCPA 111 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC TG RNLTA EIL Q+L G P R+I N+V+MG Sbjct: 112 GCTFCATGALGFGRNLTAAEILDQLLTIAYHQGLSP--------------REIRNVVLMG 157 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 MGEPL N NV K++ I L+ S RR+TLST G I R+ EE +GV LA+SLHA Sbjct: 158 MGEPLLNLRNVLKAVRIMLHKKALALSPRRVTLSTVGIPKGIYRLAEEDLGVRLALSLHA 217 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ R ++P +YP+ +++A RHY + R+TFEY +LKG+ND A L K+ Sbjct: 218 PDDETRRKIIPTAHRYPIAEIMEAVRHYHAKTKR-RVTFEYTLLKGVNDHLWQARLLAKL 276 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG+ A +NLIPFNPW G + + + ++ F+E +KR G + IR RG D+ AACGQL Sbjct: 277 LKGLSAHVNLIPFNPWEGAPVVGTPRAGVLAFAEELKRLGVPTSIRWSRGQDVGAACGQL 336 Query: 366 KSLSKR 371 R Sbjct: 337 ALKVPR 342 >gi|46199876|ref|YP_005543.1| florfenicol resistance protein [Thermus thermophilus HB27] gi|81567593|sp|Q72HC1|RLMN_THET2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|46197503|gb|AAS81916.1| florfenicol resistance protein [Thermus thermophilus HB27] Length = 355 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 138/366 (37%), Positives = 199/366 (54%), Gaps = 32/366 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + ++ ++ EEL R +QI W+Y +G RDF M+D+ + +R L + Sbjct: 8 KPILELLPEEL-----------PGEGYRRAQIAHWLYAKGARDFSEMTDLPKALREALAR 56 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + + +V S DG+ K+L + E VY+P ++R T+C+S+ VGC Sbjct: 57 EWRLSEFSLVQAFPSQDGSVKYLFTLLD-----GKKTEAVYMPYENRKTVCLSTMVGCPA 111 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC TG RNLTA EIL Q+L G P R+I N+V+MG Sbjct: 112 GCTFCATGALGFGRNLTAAEILDQLLTIAYHQGLSP--------------REIRNVVLMG 157 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 MGEPL N NV K++ I L+ S RR+TLST G I R+ EE +GV LA+SLHA Sbjct: 158 MGEPLLNLRNVLKAVRIMLHKKALALSPRRVTLSTVGIPKGIYRLAEEDLGVRLALSLHA 217 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ R ++P +YP+ +++A RHY + R+TFEY +LKG+ND A L K+ Sbjct: 218 PDDETRRKIIPTAHRYPIAEIMEAVRHYHAKTKR-RVTFEYTLLKGVNDHLWQARLLAKL 276 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG+ A +NLIPFNPW G + + ++ F+E +KR G + IR RG D+ AACGQL Sbjct: 277 LKGLSAHVNLIPFNPWEGAPVAGTPKAGVLAFAEELKRLGVPTSIRWSRGQDVGAACGQL 336 Query: 366 KSLSKR 371 R Sbjct: 337 ALKVPR 342 >gi|118475734|ref|YP_892923.1| radical SAM protein [Campylobacter fetus subsp. fetus 82-40] gi|261886280|ref|ZP_06010319.1| ribosomal RNA large subunit methyltransferase N [Campylobacter fetus subsp. venerealis str. Azul-94] gi|205829691|sp|A0RRU0|RLMN_CAMFF RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|118414960|gb|ABK83380.1| radical SAM enzyme, Cfr family [Campylobacter fetus subsp. fetus 82-40] Length = 354 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 142/378 (37%), Positives = 209/378 (55%), Gaps = 42/378 (11%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+ + ++EL L + R QI++W+Y + R F M++IS++VR L Sbjct: 2 RNLLDLSQDELANLL--------SPKFRAKQIYEWVYKKNARSFDEMTNISKDVRENLKS 53 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------------R 113 F + V + S DG+ K+L + IE+V +P K R Sbjct: 54 EFYLDPLTCVRSETSKDGSIKYLFKLTD-----GKTIESVLLPMKEEISSEDGSVERHAR 108 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 T+CVSSQVGC + CSFC T VRNL+A EI+ Q+L + Sbjct: 109 YTICVSSQVGCKMGCSFCLTAKGGFVRNLSAGEIVAQILWIKRENNI------------- 155 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233 + N+V MGMGEPL N NV K++SI D+ GL+ RR T+STSG I ++GE Sbjct: 156 -PYERRVNVVYMGMGEPLDNLTNVSKAVSILKDNDGLAIGARRQTISTSGLASQIKKLGE 214 Query: 234 -EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 ++GV+LAISLHAV+++LR L+PIN+ Y + ++DA R +P + +R+ FEY+++ + Sbjct: 215 LDLGVLLAISLHAVTDELRAKLMPINKAYNIAAVMDAVRAFP-IDMRKRVMFEYLIMDKV 273 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 ND+ DA L+K+L GI AK+NLI FNP G +Y +++ F ++ G + IR Sbjct: 274 NDNLSDAKALVKLLHGIKAKVNLILFNPHEGSQYQRPSIENVDNFRTYLQSRGVTCTIRQ 333 Query: 353 PRGLDILAACGQLKSLSK 370 +GLDI AACGQLK SK Sbjct: 334 SKGLDISAACGQLKERSK 351 >gi|313681247|ref|YP_004058985.1| 23S rRNA m(2)a-2503 methyltransferase [Sulfuricurvum kujiense DSM 16994] gi|313154107|gb|ADR32785.1| 23S rRNA m(2)A-2503 methyltransferase [Sulfuricurvum kujiense DSM 16994] Length = 354 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 142/380 (37%), Positives = 206/380 (54%), Gaps = 42/380 (11%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K ++ + EL + R QIW WIY + F+ M ++ + +R Sbjct: 1 MGKLCILDYTKAELAGMVK--------PSFRAKQIWGWIYHQYATSFETMQNLPKTMREE 52 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS----------- 112 L Q + I+ +I ++ S DGT K+L +ETV++ K Sbjct: 53 LAQTYEIMPLKIARKECSTDGTIKYLFELSD-----GKTVETVWLKMKDESIDEEGNIEH 107 Query: 113 --RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 R T+CVS+QVGC + CSFC T R+LTA EI+ QVL + M Sbjct: 108 EARYTVCVSTQVGCKVGCSFCLTAKGGFTRDLTAGEIVAQVLAVK--------------M 153 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230 + NIV MGMGEPL N DN+ K+++I D GLS S +R T+STSG I + Sbjct: 154 DNNLAAHRRLNIVYMGMGEPLDNLDNLAKAITILKDEEGLSISGKRQTVSTSGLSTKIDK 213 Query: 231 VGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 +GE ++GV +AISLHAV ++LR L+P+N+ Y + +IDA + +P + +R+ FEY+++ Sbjct: 214 LGEMDLGVHIAISLHAVDDELRTELIPMNKAYNIASIIDAVKRFP-IDTRKRVMFEYLVI 272 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349 K ND A L+K+L GI AK+NLI FNP+PG +Y ++D+V F E + + G Sbjct: 273 KNKNDDLGSAKKLVKLLHGIKAKVNLIYFNPYPGSDYQRPSREDMVAFQEYLIKHGVLCT 332 Query: 350 IRTPRGLDILAACGQLKSLS 369 IR +GLDI AACGQLK S Sbjct: 333 IRDSKGLDISAACGQLKEKS 352 >gi|81300567|ref|YP_400775.1| ribosomal RNA large subunit methyltransferase N [Synechococcus elongatus PCC 7942] gi|123769224|sp|Q31MD1|RLMN_SYNE7 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|81169448|gb|ABB57788.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942] Length = 361 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 124/368 (33%), Positives = 191/368 (51%), Gaps = 37/368 (10%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L+G EL++ ++ G P R Q+++W+Y R I + +S + R L Q Sbjct: 15 TPLLGRSLPELQDWVVAQGQPS----YRAKQLYQWLYERSIHNLAEISVFPKAWRQSL-Q 69 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + +IVD +S GT K+LLR I IE V IP R T+CVSSQ+GC++ Sbjct: 70 AVPVGRSQIVDRSVSPSGTIKYLLRLHDGEI-----IEAVGIPSGDRLTVCVSSQLGCAM 124 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG R+L EI+ QVL + +++SNIV MG Sbjct: 125 ACDFCATGKGGFRRHLAPHEIIDQVLTVQE-----------------DWQQRVSNIVFMG 167 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIGVML 239 MGEPL N D V ++ + + +R IT+ST G +I R+ E + L Sbjct: 168 MGEPLLNLDAVLAAIRCLNQD--IGIGQRGITVSTVGIPGHIRRLAETKRVGDRPLQFTL 225 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA + +R+ L+P +R YP+ L+ CR Y ++ R+TFEY++L G+ND P A Sbjct: 226 AVSLHAPNQAIRDRLIPSSRHYPITDLLQECRDYVQITGR-RVTFEYILLAGLNDQPEQA 284 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L ++L+G + +NLIP+NP EY + + F++ +++ + +R +GL Sbjct: 285 EQLAQLLRGFQSHVNLIPYNPIDEVEYQRPSKARVDAFADALRQQRVAVTVRWSKGLGAD 344 Query: 360 AACGQLKS 367 AACGQL++ Sbjct: 345 AACGQLRA 352 >gi|172037640|ref|YP_001804141.1| ribosomal RNA large subunit methyltransferase N [Cyanothece sp. ATCC 51142] gi|205829743|sp|B1WU13|RLMN_CYAA5 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|171699094|gb|ACB52075.1| CHP48-containing protein [Cyanothece sp. ATCC 51142] Length = 343 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 129/366 (35%), Positives = 191/366 (52%), Gaps = 31/366 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 ++E+L+G +L + + + G P R Q+ +W+Y +G+R +S + R L Sbjct: 4 QEETLLGKSVGQLTDWVKQQGQPA----YRGKQLHQWLYQKGVRSLTEISVFPKAWREEL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I IV I+ D TRK+LL G + IETV IP R T+CVSSQVGC Sbjct: 60 KD-YPIGRSNIVHCTIAPDQTRKYLLSL-----GDGLIIETVGIPTSKRLTVCVSSQVGC 113 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG RNLT EI+ QVL + R++S++V Sbjct: 114 PMNCDFCATGKGGYTRNLTCAEIVDQVLTVQE-----------------DFQRRVSHVVF 156 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243 MGMGEPL N V K++ I + +G +R +T+ST G I + ++ V A+SL Sbjct: 157 MGMGEPLLNLKEVIKAVKILNQDVG--IGQRSLTISTVGVPKKILELAHHQLQVTFAVSL 214 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA + LR L+P + YPL L+ CR Y ++ R+TFEY++L G+ND P + L Sbjct: 215 HAANQTLREQLIPSAKSYPLPKLLADCRKYVEITGR-RVTFEYILLGGVNDLPEQGIQLA 273 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K L G + +NLIP+NP +Y D + I F ++ + +R RGL+ AACG Sbjct: 274 KCLTGFQSHVNLIPYNPIEEADYQRPDGESINRFKSILEEHKIAVSVRYSRGLEANAACG 333 Query: 364 QLKSLS 369 QL+++S Sbjct: 334 QLRAMS 339 >gi|332204776|gb|EGJ18841.1| radical SAM superfamily protein [Streptococcus pneumoniae GA47901] Length = 361 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 122/364 (33%), Positives = 203/364 (55%), Gaps = 26/364 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DQFVVNPLKQGIVQESADGTVKYLFELPDGML-----IETVLMCQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + +IS+IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERISHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N++NV +D G++ R IT+S SG I +E + V LA+SLH Sbjct: 161 GIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSISGLAHKIRDFADEGVQVNLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L + Sbjct: 221 APNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA Sbjct: 280 LLKNIKKSSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGGNCVVRQEHGTDIDAA 339 Query: 362 CGQL 365 CGQL Sbjct: 340 CGQL 343 >gi|255656559|ref|ZP_05401968.1| radical SAM protein [Clostridium difficile QCD-23m63] gi|296449989|ref|ZP_06891753.1| cfr family radical SAM enzyme [Clostridium difficile NAP08] gi|296878370|ref|ZP_06902378.1| cfr family radical SAM enzyme [Clostridium difficile NAP07] gi|296261259|gb|EFH08090.1| cfr family radical SAM enzyme [Clostridium difficile NAP08] gi|296430668|gb|EFH16507.1| cfr family radical SAM enzyme [Clostridium difficile NAP07] Length = 343 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 133/368 (36%), Positives = 205/368 (55%), Gaps = 30/368 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK L +EL+E + I R SQI+ WIY +G + F+ M++I + +R+ L Sbjct: 4 KKIVLKNFTEDELKEFMKTI----DEKPFRGSQIFSWIY-KGAKTFEDMNNIPKSLRNKL 58 Query: 65 NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + I + +I + S D T+K+L I IETV + SR T+CVS+QVG Sbjct: 59 EEISCIGHIDIELKLESKVDNTKKYLFLLDDGNI-----IETVMMDYDSRVTVCVSNQVG 113 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C+FC + L+RNL EIL QV+ + G+++SN+V Sbjct: 114 CRMGCNFCASTMDGLIRNLEPWEILDQVIKIQE-----------------DTGKRVSNLV 156 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242 +MG GEPL NF+N K+ L I ++ GL+ R ITLST G VP + + + EI + LA+S Sbjct: 157 LMGSGEPLDNFENTKQFLKIINEKNGLNIGYRHITLSTCGIVPKMYELADLEIAINLALS 216 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LH+ ++ R ++P+ Y ++ ++DACR+Y +N R+TFEY ++KG+NDS ++A L Sbjct: 217 LHSPYDEERRKIMPVANAYSIKEILDACRYYIKKTNR-RVTFEYSLIKGVNDSEKEAKAL 275 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K+LKG+ +NLIP N EY D+ I F + ++++ + +R G DI AC Sbjct: 276 AKLLKGMLCHVNLIPINKVEEREYEKPDKAFIYKFRDSLEKNNIPATVRMSMGSDISGAC 335 Query: 363 GQLKSLSK 370 GQL+ K Sbjct: 336 GQLRRKYK 343 >gi|170077338|ref|YP_001733976.1| radical SAM protein [Synechococcus sp. PCC 7002] gi|205829912|sp|B1XQH8|RLMN_SYNP2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|169885007|gb|ACA98720.1| radical SAM enzyme, Cfr family [Synechococcus sp. PCC 7002] Length = 346 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 124/369 (33%), Positives = 197/369 (53%), Gaps = 31/369 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + ++ L+G EL + + G P R Q++ W+Y +GI D ++ + R Sbjct: 1 MPQDVLLGKSLPELTDWIETTGQPA----YRGKQLYNWLYQKGIHDLSEITVFPKAWREQ 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + + + +I ++ + DGTRK+LL+ I IETV IP + R T+CVSSQVG Sbjct: 57 MG-TYPVGRSQIHHQRTAPDGTRKYLLQLHDGLI-----IETVGIPTEKRLTVCVSSQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C FC TG R+L A EI+ QVL + +++S++V Sbjct: 111 CAMACDFCATGKSGFTRHLQAHEIIDQVLTVQ-----------------TDFQQRVSHVV 153 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 MGMGEPL N + V KS+ + + +R +T+ST G I + ++ + + LA+S Sbjct: 154 FMGMGEPLANLEQVLKSIQSLNQD--IGIGQRSLTVSTVGVPDQIRALAQQNLQITLAVS 211 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA + LR ++P YP+E L+D CR Y ++ RR++FEY++L G+ND P A L Sbjct: 212 LHAPNQALRESIIPTAVHYPIEALLDECREYVAIT-RRRLSFEYILLAGVNDLPDHAAEL 270 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K LKG + +NLIP+NP + +K I F + ++ + +R +GL+ AAC Sbjct: 271 AKKLKGFQSHVNLIPYNPITEVPFQRPGKKRINVFKQILQDHKIAVSVRYSKGLEADAAC 330 Query: 363 GQLKSLSKR 371 GQL+S +R Sbjct: 331 GQLRSNLRR 339 >gi|325297954|ref|YP_004257871.1| Ribosomal RNA large subunit methyltransferase N [Bacteroides salanitronis DSM 18170] gi|324317507|gb|ADY35398.1| Ribosomal RNA large subunit methyltransferase N [Bacteroides salanitronis DSM 18170] Length = 348 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 126/371 (33%), Positives = 194/371 (52%), Gaps = 29/371 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G +EL +A+ ++G+P QI +W+Y + + M+++S R LL Sbjct: 2 KTALLGKTLDELNDAVKELGMPA----FSARQIAQWLYGKKVSSIDEMTNLSLRNRELLK 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +H+ + V S DGT K+L R P +E+VYIP+ R TLCVSSQVGC Sbjct: 58 EHYEVGAALPVHAMRSADGTVKYLFRTP-----EGNFVESVYIPDGERATLCVSSQVGCK 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q +LT +IL Q+ ++N+V M Sbjct: 113 MNCKFCMTGKQGYAGSLTVTQILNQIYSIPERD-------------------SLTNVVFM 153 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEP N D V ++L I + G ++S +RIT+ST G + R E LA+SLH+ Sbjct: 154 GMGEPFDNLDAVLRALEILTSDYGYAWSPKRITVSTVGLRRGLERFLAESDCHLAVSLHS 213 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 R L+P R +P+ +++ R+Y S RR++FEY++ G+NDS A L+K+ Sbjct: 214 PFPSQRAELMPAERAFPITEIVNVLRNY-DFSKQRRLSFEYILFGGVNDSLVYAKELVKL 272 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G+ +INLI F+ PG + +D + + F + + + G + IR RG DI AACG L Sbjct: 273 LRGLDCRINLIRFHAIPGVDLQGADMETMTAFRDYLTKHGIFATIRASRGEDIFAACGML 332 Query: 366 KSLSKRIPKVP 376 + ++ K Sbjct: 333 STAEQQAEKER 343 >gi|222529035|ref|YP_002572917.1| ribosomal RNA large subunit methyltransferase N [Caldicellulosiruptor bescii DSM 6725] gi|222455882|gb|ACM60144.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor bescii DSM 6725] Length = 341 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 125/365 (34%), Positives = 192/365 (52%), Gaps = 31/365 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K + + +EL++ L IG RTSQI++W+Y + D +++ E+R + Sbjct: 2 KRLIKDLTFDELKKWLENIG----EKPFRTSQIFEWLYKKNATDVMQFTNLPLELREKIE 57 Query: 66 QHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 F I +I+ + DG + K+L + +E+V++P + +CVS+QVGC Sbjct: 58 DEFLINSLQILKHQ--SDGESIKFLFELCDKN-----GVESVFLPYRYGNAICVSTQVGC 110 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC + VRNL+A E++ Q++ + G ++I+N+V+ Sbjct: 111 KMNCRFCASAIGGFVRNLSAGEMVDQIINVENFTG-----------------KRITNVVL 153 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243 MG GEP N +NV K + I + G + R IT+ST G V I R+ + V LAISL Sbjct: 154 MGSGEPFDNIENVFKFIEIINSKEGKNIGARHITISTVGIVEGIYRLCDFPKQVNLAISL 213 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +N LR+ LVPIN+KYP+E ++ A +Y +N R+TFEY ++ G+NDS A L Sbjct: 214 HAPNNSLRDKLVPINKKYPVEDIMKAVDYYIKRTNR-RVTFEYALIDGVNDSIECAQELG 272 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+LKG +NLIP NP + ++ I F E +K + IR G I AACG Sbjct: 273 KMLKGKLVHVNLIPVNPVEEKGFRRPSKEKIKVFFETLKSYQINVTIRRELGSSISAACG 332 Query: 364 QLKSL 368 QL+ Sbjct: 333 QLRKR 337 >gi|312127903|ref|YP_003992777.1| radical sam enzyme, cfr family [Caldicellulosiruptor hydrothermalis 108] gi|311777922|gb|ADQ07408.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor hydrothermalis 108] Length = 344 Score = 401 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 122/365 (33%), Positives = 191/365 (52%), Gaps = 31/365 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K + + +EL + L +G R +Q+++W+Y + D +++ E+R ++ Sbjct: 2 KRLIKDLTIDELRKWLESVG----EKPFRATQVFEWLYKKNATDVMQFTNLPLELRKKID 57 Query: 66 QHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 F I +I+ + DG + K+L + +E+V++P + +CVS+QVGC Sbjct: 58 DEFLINSLQILQHQ--SDGESIKFLFELCDKN-----GVESVFLPYRYGNAICVSTQVGC 110 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC + VRNLT E++ Q++ A + G ++I+N+V+ Sbjct: 111 RMNCRFCASAIGGFVRNLTPGEMVDQIINAENFTG-----------------KRITNVVL 153 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243 MG GEP N +NV K + I + G + R IT+ST G V I R+ + V LAISL Sbjct: 154 MGSGEPFDNIENVFKFIEIINSKEGKNIGARHITISTVGIVEGIYRLCDFPKQVNLAISL 213 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +N LR+ LVPIN+KYP+E ++ A +Y +N R+TFEY ++ G+NDS A L Sbjct: 214 HAPNNSLRDKLVPINKKYPIEDIMKAVDYYIQRTNR-RVTFEYALIDGVNDSIECAQELG 272 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+LKG +NLIP NP + ++ I TF E ++ IR G I AACG Sbjct: 273 KMLKGKLVHVNLIPVNPVEEKGFKRPSKEKIKTFFETLRSYQIQVTIRRELGSSISAACG 332 Query: 364 QLKSL 368 QL+ Sbjct: 333 QLRRR 337 >gi|317151954|ref|YP_004120002.1| radical SAM enzyme, Cfr family [Desulfovibrio aespoeensis Aspo-2] gi|316942205|gb|ADU61256.1| radical SAM enzyme, Cfr family [Desulfovibrio aespoeensis Aspo-2] Length = 344 Score = 401 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 134/363 (36%), Positives = 195/363 (53%), Gaps = 22/363 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +LI + + +LE + + R R QIW+W++ + +R +GM+++S+ +R L Sbjct: 2 HNLIELTKSDLEAFVAD---ELKEPRFRAEQIWQWLWQKRVRGVEGMTNLSKPLREKLAA 58 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I +PE+ + S DGT K+LLR G +ETV IP + R + C+S+QVGC++ Sbjct: 59 MAVITWPEVARVQQSEDGTIKFLLRL-----GDGKLVETVLIPMQDRYSQCLSTQVGCAM 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC TG RN+T EIL QVL+ R L D + N+V MG Sbjct: 114 GCTFCSTGQLGFERNMTYGEILGQVLVGRQYLED-------------RGMNPLKNLVFMG 160 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N D + K L+ GLS S RR +ST GF + +GE + AISLHA Sbjct: 161 MGEPLLNLDTLLKVLNDLPCERGLSLSWRRSMVSTVGFPEQLRILGEMEVALPAISLHAP 220 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 + +LR ++P + L+ L+ A R YP + RITFEY++LKG+NDS A L +++ Sbjct: 221 TQELRARIMPKAARVHLDDLMAALRAYP-MRPRERITFEYLLLKGVNDSLEHADQLARLI 279 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 KINLI +N G Y D+ + F + + G ++ IR G DI AACGQLK Sbjct: 280 DRKKGKINLIAYNATEGLPYEAPDRAQVEAFEKRLWDHGLTAFIRRSMGADIKAACGQLK 339 Query: 367 SLS 369 + Sbjct: 340 AAQ 342 >gi|254976171|ref|ZP_05272643.1| radical SAM protein [Clostridium difficile QCD-66c26] gi|255093561|ref|ZP_05323039.1| radical SAM protein [Clostridium difficile CIP 107932] gi|255315304|ref|ZP_05356887.1| radical SAM protein [Clostridium difficile QCD-76w55] gi|255517972|ref|ZP_05385648.1| radical SAM protein [Clostridium difficile QCD-97b34] gi|255651088|ref|ZP_05397990.1| radical SAM protein [Clostridium difficile QCD-37x79] gi|260684153|ref|YP_003215438.1| radical SAM protein [Clostridium difficile CD196] gi|260687812|ref|YP_003218946.1| radical SAM protein [Clostridium difficile R20291] gi|260210316|emb|CBA64637.1| radical SAM protein [Clostridium difficile CD196] gi|260213829|emb|CBE05812.1| radical SAM protein [Clostridium difficile R20291] Length = 343 Score = 401 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 133/368 (36%), Positives = 203/368 (55%), Gaps = 30/368 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK L +EL+E + I R SQI+ WIY +G + F M++I + +R+ L Sbjct: 4 KKIVLKNFTEDELKEFMKTI----DEKPFRGSQIFSWIY-KGAKTFDDMNNIPKSLRNKL 58 Query: 65 NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + I +I + S D T+K+L I IETV + SR T+CVS+QVG Sbjct: 59 EEVSCIGNIDIELKLESKVDNTKKYLFLLDDGNI-----IETVMMDYDSRVTVCVSNQVG 113 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C+FC + L+RNL EIL QV+ + G+++SN+V Sbjct: 114 CRMGCNFCASTMDGLIRNLEPWEILDQVIKIQE-----------------DTGKRVSNLV 156 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242 +MG GEPL NF+N K+ L I ++ GL+ R ITLST G VP + + + EI + LA+S Sbjct: 157 LMGSGEPLDNFENTKQFLKIINEKNGLNIGYRHITLSTCGIVPKMYELADLEIAINLALS 216 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LH+ ++ R ++P+ Y +E +++ACR+Y +N R+TFEY ++KG+NDS ++A L Sbjct: 217 LHSPYDEERRKIMPVANAYSIEEILNACRYYIKKTNR-RVTFEYSLIKGVNDSEKEAKAL 275 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K+LKG+ +NLIP N EY D+ I F + ++++ + +R G DI AC Sbjct: 276 AKLLKGMLCHVNLIPINKVEEREYEKPDKAFIYKFRDSLEKNNIPATVRMSMGSDISGAC 335 Query: 363 GQLKSLSK 370 GQL+ K Sbjct: 336 GQLRRKYK 343 >gi|160893331|ref|ZP_02074118.1| hypothetical protein CLOL250_00880 [Clostridium sp. L2-50] gi|156865023|gb|EDO58454.1| hypothetical protein CLOL250_00880 [Clostridium sp. L2-50] Length = 361 Score = 401 bits (1031), Expect = e-110, Method: Composition-based stats. Identities = 119/376 (31%), Positives = 197/376 (52%), Gaps = 28/376 (7%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 + +KK + MM +EL + +G P R QI++W++ +GI + M+++ +++ Sbjct: 12 IEDIKKLDIRSMMFDELAVWVKSVGQPA----FRAKQIFEWVHAKGIAHAEDMTNVPKKL 67 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 + + E+ DGT K+L R + +E+V + K ++C+SS Sbjct: 68 IEEIKKQHMYGVEEVTRLVSKQDGTNKFLFRLQDGNV-----LESVLMRYKHGNSVCISS 122 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC + C FC + L+RNL A E+L Q+ + G+ ++S Sbjct: 123 QVGCRMGCRFCASTIGGLIRNLEASEMLDQIYAIERITGE-----------------RVS 165 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239 NIV+MG GEPL N+DN+ + + I +D G + S+R IT+S+ G VP I R+ +E + + Sbjct: 166 NIVVMGTGEPLDNYDNLIRFIRIINDEQGKNISQRNITVSSCGLVPQIKRLADEGLSITF 225 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH+ +++ R L+PI KY + L+D CR+Y + R+TFEY ++K ND+P A Sbjct: 226 ALSLHSPTDEDRRKLLPIANKYSIAELMDVCRYYFEKTGR-RVTFEYSLVKDENDTPEHA 284 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L ++LK + +NLIP NP +Y S + F +++ + IR G DI Sbjct: 285 YKLAELLKNMHGHVNLIPVNPIKERKYCRSLNDSVEKFKYILEKKDINVTIRRSMGRDID 344 Query: 360 AACGQLKSLSKRIPKV 375 AACGQL+ + Sbjct: 345 AACGQLRRKYEEAKDT 360 >gi|229828531|ref|ZP_04454600.1| hypothetical protein GCWU000342_00595 [Shuttleworthia satelles DSM 14600] gi|229793125|gb|EEP29239.1| hypothetical protein GCWU000342_00595 [Shuttleworthia satelles DSM 14600] Length = 392 Score = 401 bits (1031), Expect = e-110, Method: Composition-based stats. Identities = 126/370 (34%), Positives = 200/370 (54%), Gaps = 29/370 (7%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 +++ + M EEL + +G + R Q+++WI+ R D+ MS++S+++R Sbjct: 36 RAMRRIDIKSMNLEELTAYVEAMG----EKKFRARQLYEWIHRRQAADWDEMSNLSRDLR 91 Query: 62 HLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 L + + + D +IS DGTRK+L + +E+V +P ++C+SS Sbjct: 92 GRLMREADLTVLQEADCQISRLDGTRKYLFALSDGNM-----VESVLMPYHHGNSVCISS 146 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC + C FC + +RNLT E+L Q+ + + ++S Sbjct: 147 QVGCRMGCRFCASTIDGWLRNLTPAEMLDQIYRIQRDSKE-----------------RVS 189 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVML 239 N+V+MG GEPL NFDNV K + + SD GL+ S+R IT+ST G VP I + + + + L Sbjct: 190 NLVLMGTGEPLDNFDNVVKLIGLVSDENGLNISQRNITVSTCGIVPRIRELADLNLSITL 249 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 AISLHA S + R L+PI +Y L+ ++DACR+Y + R+TFEY ++ G+NDS DA Sbjct: 250 AISLHASSQETRRKLMPIAERYDLKEILDACRYYFSRTGR-RLTFEYALVAGVNDSREDA 308 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L +L + +NLIP NP + SD++ ++ F +++ G + IR G DI Sbjct: 309 ARLAGLLGDLNCHVNLIPVNPIKERNFHQSDRRALLAFRTQLEKYGVNVTIRREMGRDID 368 Query: 360 AACGQLKSLS 369 ACGQL+ Sbjct: 369 GACGQLRRRK 378 >gi|295100693|emb|CBK98238.1| 23S rRNA m(2)A-2503 methyltransferase [Faecalibacterium prausnitzii L2-6] Length = 346 Score = 401 bits (1031), Expect = e-110, Method: Composition-based stats. Identities = 129/362 (35%), Positives = 200/362 (55%), Gaps = 28/362 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K + + E+L L +G P R QI+ W++ + + DF M+D + + L Sbjct: 4 KRCISSLTLEQLTAELKAMGQPG----FRAKQIFHWVHQKLVTDFSAMTDQPKALLARLE 59 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + F I P I + + DGT K+LLR IETV + T+CVS+QVGC Sbjct: 60 EAFYIAAPIIERRQEAKDGTVKYLLRM-----ADGNCIETVVMRYHYGNTVCVSTQVGCR 114 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC + VRNL A EI ++ A+ +G+ +IS+IV+M Sbjct: 115 MGCRFCASTQAGRVRNLEAGEICSEIYTAQKDIGE-----------------RISHIVLM 157 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEPL NFD V + L S G++ R I+LST G VP I R+ E+ + + L++SLH Sbjct: 158 GIGEPLDNFDEVMRFLENISSPEGVNIGMRNISLSTCGLVPKIDRLAEKKLQLTLSVSLH 217 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +ND+R+ ++P+N YP+E+L+ A R Y + RR++FEY M++G+NDS A L Sbjct: 218 APNNDIRSGMMPVNDAYPVEVLMQAVRRYQE-TTGRRVSFEYSMVRGVNDSDACARQLAD 276 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +++G+ A +NLIP NP G Y +D ++ F + ++ G ++ +R G +I AACGQ Sbjct: 277 LIRGMGAHVNLIPINPVDGSPYSATDAANVRRFQQKLESLGVNATVRRRLGSEISAACGQ 336 Query: 365 LK 366 L+ Sbjct: 337 LR 338 >gi|149021632|ref|ZP_01835663.1| hypothetical protein CGSSp23BS72_07840 [Streptococcus pneumoniae SP23-BS72] gi|147930093|gb|EDK81079.1| hypothetical protein CGSSp23BS72_07840 [Streptococcus pneumoniae SP23-BS72] Length = 361 Score = 401 bits (1031), Expect = e-110, Method: Composition-based stats. Identities = 120/373 (32%), Positives = 209/373 (56%), Gaps = 26/373 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMCQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + + ++++IV+M Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERVNHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N++NV +D G++ R IT+STSG I +E + + LA+SLH Sbjct: 161 GIGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQINLAVSLH 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A++N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L + Sbjct: 221 ALNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAE 279 Query: 305 ILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AA Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGGNCVVRQEHGTDIDAA 339 Query: 362 CGQLKSLSKRIPK 374 CGQL+ + + + Sbjct: 340 CGQLRFNTMKRDR 352 >gi|304408290|ref|ZP_07389938.1| radical SAM enzyme, Cfr family [Paenibacillus curdlanolyticus YK9] gi|304342759|gb|EFM08605.1| radical SAM enzyme, Cfr family [Paenibacillus curdlanolyticus YK9] Length = 357 Score = 401 bits (1031), Expect = e-110, Method: Composition-based stats. Identities = 131/372 (35%), Positives = 210/372 (56%), Gaps = 26/372 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 S+ G+ +++L LL+ G H + R +Q+W+W+Y + + D+ M+D++ + LL + Sbjct: 6 PSIYGLTQDQLAAWLLERG----HKKFRATQVWEWLYRKRVTDYAAMTDVNPDCIALLAE 61 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 HF+I E ++ S DGT K+LLR + IETV + K ++CV++QVGC++ Sbjct: 62 HFAITTLEEHTKQESTDGTIKFLLRLTDGNL-----IETVLMRHKFGLSVCVTTQVGCNI 116 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 CSFC +G R+LT+ EI+ Q++ + L G ++++IV+MG Sbjct: 117 GCSFCASGLLAKSRDLTSGEIVGQIMKVQLHLDQ------------AGQGERVTHIVVMG 164 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245 +GEP NF N+ +++ D GL+ R IT+STSG I + + V LAISLHA Sbjct: 165 IGEPFDNFANMVDFINVVKDHKGLAIGPRHITVSTSGLANKIYEFTDSNLQVNLAISLHA 224 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +++LR ++ INR P+ L++A +Y +N RIT EY++LK +ND AL L ++ Sbjct: 225 PNDELRTRIMKINRAIPIAKLMEAIDYYLAKTNR-RITLEYILLKDVNDRKEHALELAEL 283 Query: 306 L--KGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + + A +NLIP+NP +Y S+Q I F + +K+ G S +R G DI AAC Sbjct: 284 VGERRSLANVNLIPYNPVDEHSQYQRSEQDSIREFYDTLKKQGVSCSVRLEHGTDIDAAC 343 Query: 363 GQLKSLSKRIPK 374 GQL+S R + Sbjct: 344 GQLRSKQIRSAR 355 >gi|119510469|ref|ZP_01629602.1| hypothetical protein N9414_01747 [Nodularia spumigena CCY9414] gi|119464891|gb|EAW45795.1| hypothetical protein N9414_01747 [Nodularia spumigena CCY9414] Length = 352 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 132/362 (36%), Positives = 187/362 (51%), Gaps = 31/362 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L+G EL + + G P R Q+ WIY +G+R +S ++ R + + Sbjct: 19 PPLLGASVAELSLWVQQQGQPA----YRGKQLHDWIYHKGVRSLADISAFPKQWRAEVAE 74 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I I ++ DGT K+LL+ I IETV IP R T+CVS+QVGC + Sbjct: 75 -VPIGRSTIHHRAVAPDGTIKYLLKLADGQI-----IETVGIPTAKRLTVCVSTQVGCPM 128 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG RNL EI+ QVL + +++S++V MG Sbjct: 129 ACDFCATGKGGFTRNLARHEIVDQVLTVQE-----------------DFQQRVSHVVYMG 171 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHA 245 MGEPL N +NV KSL + +G +R +T+ST G I ++ + V LA+SLHA Sbjct: 172 MGEPLLNTENVLKSLKSLNQDVG--IGQRSLTVSTVGIRDRIRQLAQHNLQVTLAVSLHA 229 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + LR L+P R YPLE L+D CR Y ++ RRI+FEYV+L G ND P A+ L K Sbjct: 230 PNQALREELIPSARPYPLEDLLDECREYVEIT-RRRISFEYVLLAGFNDLPEHAMQLAKC 288 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G + +NLIP+NP +Y I F +K+ + +R RGL+ AACGQL Sbjct: 289 LRGFQSHVNLIPYNPISEVDYKRPSSDRIQAFVNILKQQNTAVSVRYSRGLEADAACGQL 348 Query: 366 KS 367 ++ Sbjct: 349 RA 350 >gi|305664559|ref|YP_003860846.1| radical SAM enzyme, Cfr family protein [Maribacter sp. HTCC2170] gi|88708576|gb|EAR00812.1| radical SAM enzyme, Cfr family protein [Maribacter sp. HTCC2170] Length = 348 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 130/367 (35%), Positives = 205/367 (55%), Gaps = 24/367 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +KK+ + + ++L E + G R +Q+++W++ + F+ M++IS+E R L Sbjct: 5 IKKKDIRALTLDQLREFFVANGDKA----FRGNQVYEWLWKKSAYSFEVMTNISKETRTL 60 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +F I + ++ + S DGT K +R + +E+V IP K+R T CVSSQVG Sbjct: 61 LTSNFVINHIKVDQMQRSKDGTIKNAVRLHDDLV-----VESVLIPTKTRTTACVSSQVG 115 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 CSL C FC T K +RNL +EI QV+ I+ R +SNIV Sbjct: 116 CSLDCKFCATARLKRMRNLNPDEIFDQVVA-------------IDNESRLYFNRPLSNIV 162 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 MGMGEPL N++NV K++ + GL S +RIT+STSG I ++ +E + LA+S Sbjct: 163 FMGMGEPLMNYNNVLKAIDKITSPDGLGMSPKRITVSTSGVPKMIRKMADEQVKFKLAVS 222 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LH+ +++R ++P N L L +A +++ + RIT+EYV+ KGIND+ DA L Sbjct: 223 LHSAIDEIRTSIMPFNATLTLADLREALQYWYSKT-KSRITYEYVVWKGINDTLNDAEAL 281 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + + P+K+NLI +NP ++ ++ K I + + ++R G + +R RG DI AAC Sbjct: 282 VDFCRFAPSKVNLIEYNPIDDGDFQQANNKAIDMYVDTLERRGITVTVRRSRGKDIDAAC 341 Query: 363 GQLKSLS 369 GQL + S Sbjct: 342 GQLANKS 348 >gi|220928956|ref|YP_002505865.1| ribosomal RNA large subunit methyltransferase N [Clostridium cellulolyticum H10] gi|254807165|sp|B8I259|RLMN_CLOCE RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|219999284|gb|ACL75885.1| radical SAM enzyme, Cfr family [Clostridium cellulolyticum H10] Length = 349 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 138/362 (38%), Positives = 197/362 (54%), Gaps = 30/362 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+ M EELE+ L ++G + R QI+KWI GIR F M++IS+++R L + Sbjct: 2 INLMNMTLEELEQMLSEMG----QQKFRAKQIFKWI-NSGIRSFSDMTNISKQLRDELEK 56 Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I +IVD S D T K+L I IE+V + K T C+SSQ GC Sbjct: 57 VSKISRLKIVDRLQSKIDSTVKYLFELEDGNI-----IESVLMEYKHGFTACISSQAGCR 111 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC + RNLT E+L QV+ + G +I +IV+M Sbjct: 112 MGCKFCASTGAGFSRNLTPGEMLDQVMTMQE-----------------DSGNRIGHIVLM 154 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEPL N++NV K L I + GL R I+LST G VP I ++ +E I + L++SLH Sbjct: 155 GIGEPLDNYENVIKFLKIVNHPDGLMIGMRNISLSTCGVVPRILQLAKENIPITLSVSLH 214 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 + +D R+ ++P+N+ Y ++ LI AC+ Y +S RRITFEY M+ G NDS +DA L Sbjct: 215 SARDDKRSAMMPVNKTYCIDKLISACKIY-TVSTKRRITFEYAMILGENDSEQDARELAG 273 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKG+ +NLIP N G Y S + I F ++ G + +R G DI AACGQ Sbjct: 274 LLKGMLCHVNLIPVNTVTGNGYKKSSRIHIDKFKNILESKGIETTVRRELGSDINAACGQ 333 Query: 365 LK 366 L+ Sbjct: 334 LR 335 >gi|312134889|ref|YP_004002227.1| radical sam enzyme, cfr family [Caldicellulosiruptor owensensis OL] gi|311774940|gb|ADQ04427.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor owensensis OL] Length = 344 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 121/365 (33%), Positives = 191/365 (52%), Gaps = 31/365 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K + + +EL++ L IG R SQI++W+Y + D +++ E+R ++ Sbjct: 2 KRLIKDLTFDELKKWLENIG----EKPFRASQIFEWLYKKNATDVMQFTNLPLELREKID 57 Query: 66 QHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 F I +I++ + DG + K+L + IE+V++P + +CVS+QVGC Sbjct: 58 DEFLINSLQILEHQ--SDGKSIKFLFELCDKN-----GIESVFLPYRYGNAICVSTQVGC 110 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC + VRNL+A E++ Q++ + G ++I+N+V+ Sbjct: 111 KMNCRFCASAIGGFVRNLSAGEMVDQIINVENFTG-----------------KRITNVVL 153 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243 MG GEP N +NV K + I + G + R IT+ST G I R+ + V LAISL Sbjct: 154 MGSGEPFDNIENVFKFIEIINSKEGKNIGARHITISTVGIAEGIYRLCDFPKQVNLAISL 213 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +N LR+ LVP+N+KYP+E ++ A +Y +N R+TFEY ++ G+NDS A L Sbjct: 214 HAPNNRLRDKLVPMNKKYPVEDIMKAVDYYIQKTNR-RVTFEYALIDGVNDSIECAEELG 272 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LKG +NLIP NP + ++ I F E ++ IR G I AACG Sbjct: 273 QMLKGKLVHVNLIPVNPVEEKGFRRPSKEKIKAFFETLRSYQIQVTIRRELGSSISAACG 332 Query: 364 QLKSL 368 QL+ Sbjct: 333 QLRRR 337 >gi|160945217|ref|ZP_02092443.1| hypothetical protein FAEPRAM212_02736 [Faecalibacterium prausnitzii M21/2] gi|158442948|gb|EDP19953.1| hypothetical protein FAEPRAM212_02736 [Faecalibacterium prausnitzii M21/2] gi|295105558|emb|CBL03102.1| 23S rRNA m(2)A-2503 methyltransferase [Faecalibacterium prausnitzii SL3/3] Length = 346 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 126/363 (34%), Positives = 199/363 (54%), Gaps = 28/363 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K + + EL + L +G P R QI+ W++ + + +F M+D + + L Sbjct: 3 QKRCISSLTLAELTDELKALGQPG----FRAKQIFHWVHQKLVTEFSAMTDQPKTLLAKL 58 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I P+I + + DGT K+LLR IETV + T+CVS+QVGC Sbjct: 59 EETFYIAAPQIERRQEAKDGTVKYLLRM-----ADGNCIETVVMRYHYGNTVCVSTQVGC 113 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC + VRNL A EI ++ A+ +G+ +IS+IV+ Sbjct: 114 RMGCRFCASTQAGRVRNLEAGEICSEIYTAQKDIGE-----------------RISHIVL 156 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEPL NFD V + L + G++ R I+LST G VP I ++ E+ + + L+ISL Sbjct: 157 MGIGEPLDNFDEVMRFLENITSPEGVNIGMRNISLSTCGLVPKIDQLAEKKLQLTLSISL 216 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +N +R+ ++P+N YP+E LI R Y + RR++FEY M++G+NDS A L Sbjct: 217 HAPTNQIRSSMMPVNDAYPVEQLIQTVRRYQE-TTGRRVSFEYSMVRGVNDSDVCAKQLA 275 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +++G+ A +NLIP NP G Y +D ++ F + ++ G ++ +R G +I AACG Sbjct: 276 DLIRGMGAHVNLIPINPVDGSPYSATDAANVRRFQQKLESLGVNATVRRRLGSEISAACG 335 Query: 364 QLK 366 QL+ Sbjct: 336 QLR 338 >gi|254421960|ref|ZP_05035678.1| radical SAM enzyme, Cfr family [Synechococcus sp. PCC 7335] gi|196189449|gb|EDX84413.1| radical SAM enzyme, Cfr family [Synechococcus sp. PCC 7335] Length = 372 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 127/362 (35%), Positives = 189/362 (52%), Gaps = 31/362 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L+G E L E +++ G P R Q+ +WIY +GIR ++ S++ R ++ Sbjct: 30 VPLLGRSIEALTEWVIQHGQPA----YRGKQLHQWIYQKGIRSLDEVTVFSKKWRAEVS- 84 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 F + I S DGT K+LLR I IE V IP R T+CVSSQ+GC + Sbjct: 85 GFPVGRSHIHHRSESPDGTIKYLLRLRDGLI-----IEAVGIPSDKRLTVCVSSQIGCPM 139 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG RNL EI+ QVL + R++SNIV MG Sbjct: 140 GCDFCATGKGGFTRNLETYEIVDQVLTVQE-----------------DFQRRVSNIVFMG 182 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 MGEPL N + V ++ + + +R +T+ST G +I R+ E+ + + LA+SLHA Sbjct: 183 MGEPLLNTEAVIGAVRSLNQD--IGIGQRMMTVSTVGIPGHIRRLAEQQMQITLAVSLHA 240 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + LR L+P ++YPL L+D CR Y ++ R+TFEY++L +ND A L Sbjct: 241 SNQALRTRLIPSAKQYPLSALLDECRDYVKMTGR-RVTFEYILLADLNDRSEHAAELASE 299 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G + +NLIP+NP +Y + + F++ +K G + +R RGL+ AACGQL Sbjct: 300 LRGFQSHVNLIPYNPISEVDYQRPSRARVEGFTQQLKDKGIAVSVRYSRGLEKDAACGQL 359 Query: 366 KS 367 ++ Sbjct: 360 RA 361 >gi|218438587|ref|YP_002376916.1| ribosomal RNA large subunit methyltransferase N [Cyanothece sp. PCC 7424] gi|218171315|gb|ACK70048.1| radical SAM enzyme, Cfr family [Cyanothece sp. PCC 7424] Length = 355 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 125/362 (34%), Positives = 188/362 (51%), Gaps = 31/362 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+G +L + + K G P R Q+ +WIY +G+R +S + R L + Sbjct: 18 LLGKSLPQLTQWVQKQGQPS----YRGKQLHQWIYEKGVRSLNEISVFPKSWREDLKD-Y 72 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 I +I I+ D TRK+LLR I IETV IP + R T+CVSSQVGC + C Sbjct: 73 PIGRSDIHYRSIAPDKTRKYLLRLEDGLI-----IETVGIPTEKRLTVCVSSQVGCPMDC 127 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG RNLTA EI+ QVL + R++S++V MGMG Sbjct: 128 DFCATGKGGFTRNLTASEIVDQVLTVQE-----------------DFQRRVSHVVFMGMG 170 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVS 247 EPL N V ++ ++ +G+ R +T+ST G I ++ ++ + LA+SLHA + Sbjct: 171 EPLLNLKEVVPAVRTLNEDVGIGM--RSLTISTVGLPSKIEKLAQHQLQLTLAVSLHAPN 228 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 LR L+P ++YPL+ L+D C Y ++ R+TFEY++L +ND P A L ++ Sbjct: 229 QKLREQLIPSAKRYPLKYLLDNCHKYVEMTKR-RVTFEYILLADVNDLPHHAQELATQIR 287 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 G + +NLIP+NP +Y + + I F + ++ + +R RGL AACGQL+ Sbjct: 288 GFQSHVNLIPYNPISEADYQRPNGERINAFMKILQEEKIAVSVRYSRGLQADAACGQLRE 347 Query: 368 LS 369 Sbjct: 348 RK 349 >gi|313894907|ref|ZP_07828467.1| 23S rRNA m2A2503 methyltransferase [Selenomonas sp. oral taxon 137 str. F0430] gi|312976588|gb|EFR42043.1| 23S rRNA m2A2503 methyltransferase [Selenomonas sp. oral taxon 137 str. F0430] Length = 346 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 129/363 (35%), Positives = 193/363 (53%), Gaps = 26/363 (7%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 ++ GM EEL AL GIP R R +QI + IY RG F ++ + + +R L ++ Sbjct: 2 NIFGMTVEELRAALAPFGIP----RFRAAQIAEGIYRRGAVSFDAITSLPKSLRAQLAEN 57 Query: 68 FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 F+I P +V+ S DG T K L F ETV + ++C+S+Q GC++ Sbjct: 58 FTIERPTVVNRLHSADGATIKLLYAF-----ADGQTAETVLMRHPYGNSVCISTQAGCAM 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC + LVRNLT EI Q + L G ++ IV+MG Sbjct: 113 GCAFCASTLHGLVRNLTRGEIAAQAIGIADFLRQ--------------EGARVDTIVVMG 158 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 GEPL N+DNV +L + + L R +TLSTSG VP I R+ +E I + LAISLHA Sbjct: 159 SGEPLENYDNVVGALRLLHEDYVLGLGYRGMTLSTSGIVPGIERLADEGIPISLAISLHA 218 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +++LR+ ++P+NR+YPL ++ A RHY + R+T+EY++++ +ND R+A L + Sbjct: 219 PTDELRSRIMPVNRRYPLADVLRAARHYAARTKR-RVTYEYILIRDVNDGVREAEQLAAL 277 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+ A +NLIP NP I F ++ ++ +R G DI AACGQL Sbjct: 278 LRDRLASVNLIPINPVAERSLHRPSSNAIRRFQRVLEERHITATLRREMGTDIRAACGQL 337 Query: 366 KSL 368 ++ Sbjct: 338 RNR 340 >gi|332521669|ref|ZP_08398122.1| radical SAM enzyme, Cfr family [Lacinutrix algicola 5H-3-7-4] gi|332042758|gb|EGI78958.1| radical SAM enzyme, Cfr family [Lacinutrix algicola 5H-3-7-4] Length = 346 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 127/366 (34%), Positives = 202/366 (55%), Gaps = 24/366 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK+ + + +E+L E +K G R +Q+++W++ +G F+ M++IS+E R +L Sbjct: 4 KKKDIRALSKEQLREFFVKEGDKA----FRGNQVYEWLWGKGAHTFEDMTNISKETRQML 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +F I + + + S DGT K ++ I +E+V IP ++R T CVSSQVGC Sbjct: 60 QDNFVINHISVDTMQRSSDGTVKNAVKLHDGLI-----VESVLIPTETRTTACVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 SL C FC T K +RNL +EI QV+ I+ R +SNIV Sbjct: 115 SLDCKFCATSRLKRMRNLNPDEIYDQVVA-------------IDKESKLYFNRPLSNIVF 161 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MGMGEPL N++NV K++ + GL S +RI +STSG I ++ ++ + LA+SL Sbjct: 162 MGMGEPLMNYNNVIKAIDKITSPEGLGMSPKRIVVSTSGVPKMIKKMADDAVKFNLAVSL 221 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ +++R ++P N+ +PL L +A ++ + +IT+EYV+ GIND D L+ Sbjct: 222 HSAIDEVRTEIMPFNKTFPLNDLKEALEYWYEKTQR-KITYEYVVWDGINDRREDINALV 280 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K K +P KIN+I +NP ++ + K I + + ++ + +R RG DI AACG Sbjct: 281 KFCKYVPCKINIIEYNPIDDGQFQQASSKAIDNYIQALESNNIVVNVRRSRGKDIDAACG 340 Query: 364 QLKSLS 369 QL + S Sbjct: 341 QLANKS 346 >gi|253574078|ref|ZP_04851420.1| cfr family radical SAM enzyme [Paenibacillus sp. oral taxon 786 str. D14] gi|251846555|gb|EES74561.1| cfr family radical SAM enzyme [Paenibacillus sp. oral taxon 786 str. D14] Length = 351 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 132/372 (35%), Positives = 202/372 (54%), Gaps = 24/372 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K+S+ GM +++L LL G H R R +W+ +Y + + F M + E L Sbjct: 1 MNKQSIYGMTKDQLAAWLLDRG----HKRGRAEMVWEGLYRKRVTAFDAMEGVHPECLAL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L + F I E + S DGT K+L R + IETV + K ++CV++QVG Sbjct: 57 LKEQFVIETLEEHVRQESIDGTIKFLFRLQDGNL-----IETVLMRHKFGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ CSFC +G K R+LT+ EI+ QV+ + + G ++S+IV Sbjct: 112 CNIGCSFCASGLLKKSRDLTSGEIVEQVMKVQMH------------LDRQGKGERVSHIV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242 +MG+GEP N+DN+ L + D GL+ R IT+STSG I + ++ V LA+S Sbjct: 160 VMGIGEPFDNYDNMADFLRVIQDPKGLAIGPRHITVSTSGLADKIIEFADSDLQVNLAVS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR ++ IN+ P+E L+ A +Y +N R+T EY++LKG+ND A L Sbjct: 220 LHAPNNELRTRIMKINKAIPIEKLMAAIDYYLERTNR-RLTIEYILLKGVNDGTEHAQEL 278 Query: 303 IKILKGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +L +NLIP+NP +Y S+QK ++ F + +K+ G S +R G DI AA Sbjct: 279 ADLLGDRFVNVNLIPYNPVDEHSQYQRSEQKSVLAFYDALKKRGLSVSVRLEHGADIDAA 338 Query: 362 CGQLKSLSKRIP 373 CGQL+S + P Sbjct: 339 CGQLRSKQLKQP 350 >gi|86140644|ref|ZP_01059203.1| hypothetical protein MED217_15870 [Leeuwenhoekiella blandensis MED217] gi|85832586|gb|EAQ51035.1| hypothetical protein MED217_15870 [Leeuwenhoekiella blandensis MED217] Length = 347 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 135/370 (36%), Positives = 203/370 (54%), Gaps = 25/370 (6%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +K + + REEL + + G R +Q+++W++V+G F M++IS+E Sbjct: 1 MKNTQK-DIRALSREELRDFFVSQG----EKAFRGNQVYEWLWVKGAHSFDDMTNISKET 55 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L++HF I + ++ + S DGT K ++ +E+V IP SR T CVSS Sbjct: 56 RAFLDEHFVINHIKVDQMQRSSDGTIKNAVKLHDNLT-----VESVLIPTASRITACVSS 110 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGCSL C FC T K +RNL +EI QV+ I+ R +S Sbjct: 111 QVGCSLNCKFCATARLKRMRNLNPDEIFDQVVA-------------IDQQSRLYHNRPLS 157 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVML 239 NIV MGMGEPL N+ NV KS+ +D GL S +RIT+STSG I ++ + E+ L Sbjct: 158 NIVFMGMGEPLMNYKNVVKSIEKITDPEGLGMSPKRITVSTSGVPKIIKKMADDEVKFNL 217 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH+ +D+R ++P N + PL+ L +A Y + +RIT+EYV+ +GIND +D Sbjct: 218 AVSLHSALDDVRTDIMPFNEQMPLQELKEAL-QYWYVKTKKRITYEYVVWRGINDQDKDI 276 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 LI +P+K+NLI +NP ++ +D I + ++ G + +R RG DI Sbjct: 277 EALIDFCLAVPSKVNLIEYNPIDDGQFQQADPLAIDRYVAKLEDRGITVTVRRSRGKDID 336 Query: 360 AACGQLKSLS 369 AACGQL + + Sbjct: 337 AACGQLANKN 346 >gi|268678701|ref|YP_003303132.1| radical SAM enzyme, Cfr family [Sulfurospirillum deleyianum DSM 6946] gi|268616732|gb|ACZ11097.1| radical SAM enzyme, Cfr family [Sulfurospirillum deleyianum DSM 6946] Length = 358 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 142/382 (37%), Positives = 214/382 (56%), Gaps = 42/382 (10%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++KE++ + +EEL E + R QI++W+Y + + F M ++ +E++ Sbjct: 1 MEKENIFDLSKEELSEVIK--------PAFRAKQIYQWLYQKYVTSFDEMKNLPKELKEQ 52 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-------------E 110 LN+ + + IV + SCDG++K+L +E V +P Sbjct: 53 LNETYYLDPLRIVTIEESCDGSKKYLFALKDN-----QTVEAVLLPMKQEQVDEEGKLVH 107 Query: 111 KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 +R T+C+SSQVGC + C+FC TG RNLTA EI QVL+ + Sbjct: 108 HARYTICISSQVGCKIGCAFCLTGKSGFKRNLTAGEITTQVLMIKRDNAI---------- 157 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230 + NIV MGMGEPL N NV K++ I SD GLS S RR T+STSG I + Sbjct: 158 ----AENRRVNIVYMGMGEPLDNLTNVSKAVRIFSDLDGLSISPRRQTISTSGLSSQIEK 213 Query: 231 VGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 +G+ ++G++LAISLHAV +DLR L+PIN+ Y +E +++A R +P + +R+ FEY+++ Sbjct: 214 LGKMDLGILLAISLHAVDDDLRQKLMPINKAYNIESIMNAVRGFP-IDARKRVMFEYLVM 272 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349 KG+ND + A L+K+L GI AK+NLI FNP G ++ KD++ F + + G Sbjct: 273 KGVNDDQKSAKKLVKLLHGIKAKVNLIYFNPHAGSDFDRPSTKDMIAFQQYLVDHGVLCT 332 Query: 350 IRTPRGLDILAACGQLKSLSKR 371 IR +GLDI AACGQLK ++ Sbjct: 333 IRQSKGLDISAACGQLKDKEQK 354 >gi|167747880|ref|ZP_02420007.1| hypothetical protein ANACAC_02609 [Anaerostipes caccae DSM 14662] gi|167652702|gb|EDR96831.1| hypothetical protein ANACAC_02609 [Anaerostipes caccae DSM 14662] Length = 354 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 114/353 (32%), Positives = 195/353 (55%), Gaps = 27/353 (7%) Query: 31 VRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISC-DGTRKWL 89 + R QI++W + R M+++ + ++ L + + + V+ +S DGTRK+L Sbjct: 22 KKFRAKQIFEWFHKRLASSLDEMNNLPKNLKEKLQEKYEAAELKEVETYVSRIDGTRKYL 81 Query: 90 LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149 + IE+V + K ++C+SSQ GC + C FC + L RNL E+L Sbjct: 82 FQLND-----GNTIESVLMKYKHGNSVCISSQAGCRMGCRFCASTLGGLDRNLLPSEMLG 136 Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209 Q+ + G+ ++SN+V+MG GEPL N++N+ + + + +D G Sbjct: 137 QIYYIQKDTGE-----------------RVSNVVVMGTGEPLDNYENLLRFIRLLTDEKG 179 Query: 210 LSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 L+ S+R +T+ST G VP I + +E + + LAISLHA ++++R L+P+ +Y +E L+ Sbjct: 180 LNLSQRNLTVSTCGLVPKIRELADEKLQMTLAISLHASNDEMRKSLMPVANQYSMEDLLA 239 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 AC++Y + RITFEY ++ +NDSP++A L + L G P +NLIP NP ++ Sbjct: 240 ACKYYFDRTGR-RITFEYSLVAEVNDSPQNAKELCRFLGGFPCHVNLIPVNPIKERDFRQ 298 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQ 381 S + + F ++++ + IR G DI AACGQL+ K++ V +QE++ Sbjct: 299 SMPEFVNDFKNILEKNRVNVTIRREMGRDINAACGQLR--RKKLNSVEKQEIR 349 >gi|320530185|ref|ZP_08031255.1| radical SAM enzyme, Cfr family [Selenomonas artemidis F0399] gi|320137618|gb|EFW29530.1| radical SAM enzyme, Cfr family [Selenomonas artemidis F0399] Length = 346 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 131/363 (36%), Positives = 194/363 (53%), Gaps = 26/363 (7%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 ++ GM EEL AL GIP R R +QI + IY RG F ++ + + +R L ++ Sbjct: 2 NIFGMTVEELRAALAPFGIP----RFRAAQIAEGIYRRGAVSFDAITSLPKSLRAQLAEN 57 Query: 68 FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 F+I P +V+ S DG T K L F ETV + ++C+S+Q GC++ Sbjct: 58 FTIERPTVVNRLHSADGATIKLLYAF-----ADGQTAETVLMRHPYGNSVCISTQAGCAM 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC + LVRNLT EI Q + L G ++ IV+MG Sbjct: 113 GCAFCASTLHGLVRNLTRGEIAAQAIGIADFLRQ--------------EGARVDTIVVMG 158 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 GEPL N+DNV +L + + L R +TLSTSG VP I R+ +E I + L+ISLHA Sbjct: 159 SGEPLENYDNVVGALRLLHEDYVLGLGYRGMTLSTSGIVPGIERLADEGIPISLSISLHA 218 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +++LR+ ++P+NR+YPL ++ A RHY + RRIT+EY++++ +ND R A L + Sbjct: 219 PTDELRSRIMPVNRRYPLADVMRAARHY-AVRTKRRITYEYILIRDVNDGVRAAEQLAAL 277 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G A +NLIP NP I F ++ ++ +R G DI AACGQL Sbjct: 278 LRGRLASVNLIPINPVAERNLHRPSSNVIRRFQRTLEERHITATLRREMGTDIQAACGQL 337 Query: 366 KSL 368 ++ Sbjct: 338 RNR 340 >gi|207723161|ref|YP_002253560.1| hypothetical protein 48 [Ralstonia solanacearum MolK2] gi|206588355|emb|CAQ35318.1| conserved hypothetical protein 48 [Ralstonia solanacearum MolK2] Length = 396 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 133/384 (34%), Positives = 195/384 (50%), Gaps = 17/384 (4%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN + +L+ + L +G R Q+ +WI+ G DF M+D+++ + Sbjct: 1 MNDM--VNLLDFDAQGLLAYCESLG----EKSFRAKQLQRWIHQSGAADFGEMTDLAKSL 54 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L +I P ++ + +S DGTRKWL+ +G +ETVYIPE++RGTLCVSS Sbjct: 55 REKLATRATIQAPAVISDHLSSDGTRKWLV-----DVGAGNAVETVYIPEETRGTLCVSS 109 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC++ C FC TG Q RNL+ EI+ Q+ Sbjct: 110 QAGCAVNCRFCSTGKQGFSRNLSTGEIVGQLWXXXXXXXXXXXXXXXXXXXXXXXXXXXX 169 Query: 181 NIVMMGMGEPLCNFDNV------KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234 ++ + D S+RR+TLSTSG VP + R+ + Sbjct: 170 XXXXXXXXXXXXXXXXXXXXXXXVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSRD 229 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 + V LA+SLHA ++ LR++LVP+N+KYPL L+ ACR Y + ITFEY ML G+ND Sbjct: 230 LPVALAVSLHASNDALRDVLVPLNKKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVND 289 Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 S A L++++ +P K NLIPFNP+P S+ + I FS+ + +G + IR R Sbjct: 290 SIEHARELLRVIADVPCKFNLIPFNPFPESGLKRSNNEQIRRFSQVLLDAGIVTTIRKTR 349 Query: 355 GLDILAACGQLKSLSKRIPKVPRQ 378 G DI AACGQL K ++ + Sbjct: 350 GDDIDAACGQLAGEVKDRTRLAER 373 >gi|210634763|ref|ZP_03298291.1| hypothetical protein COLSTE_02218 [Collinsella stercoris DSM 13279] gi|210158703|gb|EEA89674.1| hypothetical protein COLSTE_02218 [Collinsella stercoris DSM 13279] Length = 348 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 121/375 (32%), Positives = 194/375 (51%), Gaps = 29/375 (7%) Query: 1 MNFLKK-ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59 M + + + + EEL++ + ++G P R Q+ +WI+ + + F M+++ Sbjct: 1 MERITRSRDIRLLTLEELQDLVKELGQPA----FRAKQLNEWIHDKNVCSFDEMTNLPAA 56 Query: 60 VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119 +R L++ FS P + +++S DG+RK+LL+F V +ETV +P +++ +C+S Sbjct: 57 LREKLSERFSFNVPVELVKQVSKDGSRKYLLQFSD-----GVSVETVGMPNRNKLAVCIS 111 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 SQ GC++ C+FC TG L R+LTA+E++ QVL G+ ++ Sbjct: 112 SQAGCAMGCAFCATGLAGLSRSLTAQEMVDQVLHVARDFGE-----------------RV 154 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVM 238 +++V MG GEP NFD ++L I +D GL+ R +T+ST G +P I R E Sbjct: 155 TSVVFMGQGEPFANFDATVQALRILNDPDGLAIGARHLTVSTCGVIPGIRRFAELPEQFT 214 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LAISLH+ RN L+P +KY L L +A + Y + R T+E+ M+ GIND+ + Sbjct: 215 LAISLHSAIQGTRNQLMPGVKKYTLLRLHEAIQLYVEKTGR-RPTYEFAMIDGINDTSPE 273 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 L+ G +NLI N P + S + + + + G + IR RG DI Sbjct: 274 MQALVDFCAGTLCHVNLIQLNNIPDSPFRPSPIEKVESLQRRLTMHGVETTIRNSRGSDI 333 Query: 359 LAACGQLKSLSKRIP 373 AACGQLK R Sbjct: 334 DAACGQLKQRRFRAQ 348 >gi|187778899|ref|ZP_02995372.1| hypothetical protein CLOSPO_02494 [Clostridium sporogenes ATCC 15579] gi|187772524|gb|EDU36326.1| hypothetical protein CLOSPO_02494 [Clostridium sporogenes ATCC 15579] Length = 348 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 136/362 (37%), Positives = 204/362 (56%), Gaps = 29/362 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 E+++ + EEL+E L+ + R QI+ WIY + I DF M +I ++ ++LL Sbjct: 8 ENILDLTLEELKEWLVS----KEEKAFRAKQIFNWIYDKLIFDFNNMKNIPEKTKNLLYD 63 Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +F I P++V + IS D T K+L + I IE+V + K ++CVS+QVGC Sbjct: 64 NFYIGVPKVVKKLISQDKNTYKFLFEYKDGNI-----IESVVMKYKHGNSICVSTQVGCR 118 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC + ++RNLT+ EIL Q++ A+ +G+ +ISN+V+M Sbjct: 119 MGCKFCASTLDGVIRNLTSGEILSQIMAAQKEIGE-----------------RISNVVLM 161 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244 G GEPL NF NV K L + L+ +R ITLST G VP I + ++ + LAISLH Sbjct: 162 GSGEPLDNFGNVTKFLDSVTSENTLNIGQRHITLSTCGIVPKIKELADKNYNITLAISLH 221 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 + + LR ++PI KY ++ L++AC +Y +N RITFEY ++KG NDS ++A L Sbjct: 222 SPEDLLRKEMMPIANKYSIKELMEACDYYINKTNR-RITFEYALVKGKNDSIKEAKELSS 280 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L+G +NLIP N Y S K+I +F +K +G + IR G DI AACGQ Sbjct: 281 VLRGKLCHVNLIPVNEIKENSYEKSTSKNIESFGNILKENGIETTIRREMGADINAACGQ 340 Query: 365 LK 366 L+ Sbjct: 341 LR 342 >gi|328953509|ref|YP_004370843.1| Ribosomal RNA large subunit methyltransferase N [Desulfobacca acetoxidans DSM 11109] gi|328453833|gb|AEB09662.1| Ribosomal RNA large subunit methyltransferase N [Desulfobacca acetoxidans DSM 11109] Length = 350 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 152/365 (41%), Positives = 214/365 (58%), Gaps = 26/365 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L + + + E+ ++ G R Q+ KW++ +G +F M+DI +EVRHLL + Sbjct: 5 INLKELTQTDFEQLMVSWG----QAPFRARQVQKWLF-KGATEFNAMTDIGKEVRHLLQE 59 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I ++ + S DG+ K+ + IE+V IPE TLC+SSQVGC+ Sbjct: 60 KSYISQLALLARRRSADGSEKFSFGLSDGEV-----IESVLIPENDHYTLCLSSQVGCAQ 114 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG + L RNL+ EI+ QVL ARSL+G ISN+V MG Sbjct: 115 GCRFCLTGRRGLTRNLSPAEIINQVLAARSLVGKRQA---------------ISNLVFMG 159 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL NF N+ K+L+I GL+FS RR+T+ST G P I +G I V LA+SL+A Sbjct: 160 MGEPLDNFANLVKALTIILAPWGLNFSYRRVTVSTVGLAPLIPALGHAIRVNLAVSLNAP 219 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ LR+ L+P+NRKYPL +I+ACR +P L RRITF YV+L+GIND+P A L ++L Sbjct: 220 NDALRSQLMPVNRKYPLAQIIEACRAFP-LPPHRRITFCYVLLQGINDTPSHARELSRLL 278 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +G AKINLIPFNP + + ++ F + + + Y++ IR RG DI AACGQL Sbjct: 279 QGFRAKINLIPFNPDSCLPFKRPTPEAVLAFQDILIQKHYTTLIRESRGADISAACGQLA 338 Query: 367 SLSKR 371 +R Sbjct: 339 GEVQR 343 >gi|227872151|ref|ZP_03990521.1| Fe-S-cluster redox protein [Oribacterium sinus F0268] gi|227842009|gb|EEJ52269.1| Fe-S-cluster redox protein [Oribacterium sinus F0268] Length = 359 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 116/372 (31%), Positives = 190/372 (51%), Gaps = 34/372 (9%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +++ + EL+ + G P R Q++ W++ + + ++ M++I + +R L + Sbjct: 13 KNIRDLELIELKSLCKEEGFPA----YRAEQLFSWLHEKAVEEYTEMTNIPKAMREKLAE 68 Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +S+ PE S D T K+L R +IE+V++ + + C+S+QVGC Sbjct: 69 GYSVALPEADLHLCSKMDDTEKFLFRLSD-----GHKIESVFMRYQHGNSACISTQVGCR 123 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC + L RN T E+L Q+ L G +IS++V+M Sbjct: 124 MGCAFCASTLDGLARNCTTGEMLGQIYAMEKLTGQ-----------------RISHVVLM 166 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244 G GEPL N++ V + L I SD G + S R ITLST G VP I + +E G+ LA+SLH Sbjct: 167 GSGEPLDNYEEVTRFLRIISDEKGKNLSIRNITLSTCGLVPRIYDLAKENYGITLALSLH 226 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +++ R ++PI +Y L ++ A + Y + R++FEY ++ G+ND D L Sbjct: 227 APTDEQRRKIMPIANRYSLSEIMPAVKEYFKKTGR-RVSFEYALVLGVNDGEEDRKALAD 285 Query: 305 ILKG-----IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 +LKG P +NLIP NP + D+K + F E +++ G + +R G DI Sbjct: 286 LLKGEKGEHFPCHVNLIPVNPIKERTFAPPDRKRVYAFQEYLQKRGITCTVRREMGADIA 345 Query: 360 AACGQLKSLSKR 371 ACGQL+ + Sbjct: 346 GACGQLRRDGTK 357 >gi|332799418|ref|YP_004460917.1| Ribosomal RNA large subunit methyltransferase N [Tepidanaerobacter sp. Re1] gi|332697153|gb|AEE91610.1| Ribosomal RNA large subunit methyltransferase N [Tepidanaerobacter sp. Re1] Length = 343 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 126/365 (34%), Positives = 201/365 (55%), Gaps = 30/365 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K +L + ++EE + ++G P R QI+KWIY +G +F+ M+D+S+++ Sbjct: 1 MEKTNLKSLTLTQMEEFIKQLGEPV----YRAKQIFKWIY-KGQTEFEKMTDLSKDLIAR 55 Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L + +I + S D T K++ +E+V + T C+SSQV Sbjct: 56 LKDCAYVGKIDIYKKYESEIDETTKYVFALED-----GQMVESVKMKYSFGTTACISSQV 110 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GCS+ C+FC + +VRNL E+ +V+ KIS + Sbjct: 111 GCSMGCAFCASTEGGMVRNLAWWEMADEVIAIEK-----------------DSNVKISRV 153 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 V+MG GEPL N+D + + L I + + + S RR+T+ST G VP I R+ EE + + LA+ Sbjct: 154 VVMGSGEPLLNYDELIQFLRILNSPLAFNISYRRLTVSTCGIVPKIIRLAEEGLPITLAV 213 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++D+R+ L+PIN +YP+ L+DAC++Y + RITFEY+++ IND+ + A Sbjct: 214 SLHAPNDDIRSSLMPINERYPILQLLDACKYYIMKTKR-RITFEYILISDINDTEQCACE 272 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L +LK + +NLIP NP G ++ SD I F + + +G S+ +R G DI AA Sbjct: 273 LSNLLKDLLCHVNLIPLNPVEGKKFKKSDDSRIRKFEQILLNNGISATVRREMGSDINAA 332 Query: 362 CGQLK 366 CGQL+ Sbjct: 333 CGQLR 337 >gi|320451516|ref|YP_004203612.1| radical SAM enzyme, Cfr family [Thermus scotoductus SA-01] gi|320151685|gb|ADW23063.1| radical SAM enzyme, Cfr family [Thermus scotoductus SA-01] Length = 349 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 142/367 (38%), Positives = 197/367 (53%), Gaps = 32/367 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 S++ ++ EEL R +QI W+Y RG DF M+D+ + R L Sbjct: 2 RSILELLPEEL-----------PGEGYRKAQIAHWLYARGAMDFSEMTDLPKGFREALAG 50 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + I +V+ S DG+ K+L + E VY+P ++R T+C+SS VGC Sbjct: 51 EWRISEFALVEAYPSRDGSVKYLFTLLD-----GKKTEAVYMPYENRKTVCLSSMVGCPA 105 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC TG RNLTA EIL Q+L G P R I N+V+MG Sbjct: 106 GCTFCATGALGFGRNLTAAEILSQLLAIAHHQGISP--------------RDIRNVVLMG 151 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 MGEPL N NV K++ GL+ S RRITLST G I R+ EE +GV LA+SLHA Sbjct: 152 MGEPLLNLGNVLKAIRTMLHPKGLAMSPRRITLSTVGIPKGIHRLAEEDLGVRLALSLHA 211 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ R ++P +Y + +++A RHY + R+TFEY +LKG+ND P A L K+ Sbjct: 212 PDDETRRKIIPTAHRYSVGEILEAVRHYYARTKR-RVTFEYTLLKGLNDHPWQARLLAKL 270 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKGI A +NLIPFNPW G + + I+ F+E ++R G + IR RG D+ AACGQL Sbjct: 271 LKGISAHVNLIPFNPWEGAPVEGTPKAGILAFAEELRRLGIPTSIRFSRGQDVGAACGQL 330 Query: 366 KSLSKRI 372 + + Sbjct: 331 ALKAPKA 337 >gi|225028096|ref|ZP_03717288.1| hypothetical protein EUBHAL_02366 [Eubacterium hallii DSM 3353] gi|224954566|gb|EEG35775.1| hypothetical protein EUBHAL_02366 [Eubacterium hallii DSM 3353] Length = 349 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 116/365 (31%), Positives = 187/365 (51%), Gaps = 29/365 (7%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-NQ 66 L M EEL + ++++G + R QI+ W++ + +R + M ++ + L + Sbjct: 6 DLKSMTLEELTDCVMELG----EKKFRAKQIYGWLHQKLVRSPEEMKNVPAKCIEKLLKE 61 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 H E+ + DGT+K+L + +E+V + K ++C+SSQ GC + Sbjct: 62 HPFYGVEEVEHYESKIDGTQKFLFSLHDGNM-----VESVLMKYKHGNSVCISSQAGCRM 116 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC + L RNL E+L Q+ + G+ ++S++V+MG Sbjct: 117 GCRFCASTLLGLSRNLYPSEMLDQIYAIQKATGE-----------------RVSHLVVMG 159 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 GEP NF+++ + + + GL+ S R IT+ST G VP I + V LAISLH+ Sbjct: 160 TGEPFDNFESLCRMIELLCSPDGLNISHRNITVSTCGIVPKIYEFADRNPQVTLAISLHS 219 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ +R L+PI KY ++ L++A R+Y + RRITFEY ++KG+ND A LI Sbjct: 220 PNDTMRRELMPIANKYSMDELMEAARYY-TRTTGRRITFEYSLVKGVNDKKEHAQELISR 278 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +KG+ INLIP NP ++ S Q ++ F ++R +R G DI AACGQL Sbjct: 279 VKGMNCHINLIPVNPIKERDFEQSTQNNVAAFKHILERQHIQVTVRREMGRDIQAACGQL 338 Query: 366 KSLSK 370 + K Sbjct: 339 RKSYK 343 >gi|332981566|ref|YP_004463007.1| 23S rRNA m(2)A-2503 methyltransferase [Mahella australiensis 50-1 BON] gi|332699244|gb|AEE96185.1| 23S rRNA m(2)A-2503 methyltransferase [Mahella australiensis 50-1 BON] Length = 344 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 128/366 (34%), Positives = 197/366 (53%), Gaps = 30/366 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 + +L M +++ + + ++G P R QI+ W+Y +G+ D MSD+ + R L Sbjct: 3 QPIALKDMSMDDMSKLVQQLGQPA----YRAQQIFSWVY-KGVDDIDEMSDLPADFRKRL 57 Query: 65 NQHFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + I + S DG+ K+L I IE+V + + ++CVSSQVG Sbjct: 58 KERCYTDSCRIYKRQQSEDGSAIKYLFLLKDGNI-----IESVLMLYEYGNSVCVSSQVG 112 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C+FC + + + RNLT E++ Q+L + VGRKIS++V Sbjct: 113 CRMGCAFCASTIKGIKRNLTKGEMVDQILRIQQ-----------------DVGRKISHVV 155 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG GEPL N++ + + + GL+ S R +TLST G VP I + +E + + LA+S Sbjct: 156 LMGSGEPLDNYEQSIAFMRLLHEPKGLNISYRNMTLSTCGLVPRIYDLAKEGMPITLAVS 215 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA ++D+R L+P+++ Y ++ +I AC +Y + R+TFEY+MLK IND A L Sbjct: 216 LHAPNDDIRRQLIPMSKVYSIDDIIKACNYYIEKTGR-RVTFEYIMLKDINDRVEHAYML 274 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LKG+ +NLIPFN GCE+ S QK I F + + G IR G DI AAC Sbjct: 275 ADVLKGMICHVNLIPFNNVEGCEFQPSSQKQIEHFYGILNKKGIPVSIRRRLGTDIDAAC 334 Query: 363 GQLKSL 368 GQL+ Sbjct: 335 GQLRRR 340 >gi|313113578|ref|ZP_07799166.1| radical SAM enzyme, Cfr family [Faecalibacterium cf. prausnitzii KLE1255] gi|310624093|gb|EFQ07460.1| radical SAM enzyme, Cfr family [Faecalibacterium cf. prausnitzii KLE1255] Length = 346 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 125/363 (34%), Positives = 200/363 (55%), Gaps = 28/363 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K + EL L +G P R QI+ W++ + + +F M+D + + L Sbjct: 3 QKRCISSFTLAELTAELKAMGQPG----FRAKQIFHWVHQKLVTEFSAMTDQPKTLLAKL 58 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I P+I + + DGT K+LLR IETV + T+CVS+QVGC Sbjct: 59 EESFYIAAPKIERRQEAKDGTVKYLLRM-----ADGNCIETVVMRYHYGNTVCVSTQVGC 113 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC + VR+L A EI ++ A+ +G+ +IS+IV+ Sbjct: 114 RMGCRFCASTQAGRVRDLEAGEICSEIYTAQKDIGE-----------------RISHIVL 156 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEPL NFD V K L + G++ R I+LST G VP I ++ E+ + + L++SL Sbjct: 157 MGIGEPLDNFDEVMKFLENITSPEGVNIGMRNISLSTCGLVPKIDQLAEKKLQLTLSVSL 216 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +N++R+ ++P+N YP+E+L+ A R Y + RR++FEY M++G+NDS A L Sbjct: 217 HAPNNEIRSGMMPVNDAYPVEVLMQAVRRYQD-TTGRRVSFEYSMVRGVNDSDACARQLA 275 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +++G+ A +NLIP NP G Y +D ++ F + ++ G ++ +R G +I AACG Sbjct: 276 NLIRGMGAHVNLIPINPVDGSPYSATDAANVHRFQQKLESLGVNATVRRRLGSEISAACG 335 Query: 364 QLK 366 QL+ Sbjct: 336 QLR 338 >gi|332702335|ref|ZP_08422423.1| Ribosomal RNA large subunit methyltransferase N [Desulfovibrio africanus str. Walvis Bay] gi|332552484|gb|EGJ49528.1| Ribosomal RNA large subunit methyltransferase N [Desulfovibrio africanus str. Walvis Bay] Length = 362 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 134/379 (35%), Positives = 205/379 (54%), Gaps = 21/379 (5%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M+ K +L+ + +EL + ++ R R R Q+W+W++ +G+ DF+ MS++S+ + Sbjct: 1 MDT--KINLLDLSLDELRGFIAEL----REPRFRAEQVWQWMWQKGVSDFEEMSNVSKAL 54 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L +H I P I + S DGT K+LLR + IETV +P ++ T C+S+ Sbjct: 55 RGKLAEHAVIRPPTIDTVRESDDGTVKFLLRLADGAL-----IETVLLPSRTHYTQCLST 109 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC++ C+FC TGT L RNL EI QVLL R L + E R + Sbjct: 110 QVGCAMGCAFCSTGTMGLARNLAHSEICGQVLLGRKWLEQKNSQDKGE--------RSLR 161 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+V MGMGEPL N+D + KSL D FS RR+T+ST+G + + LA Sbjct: 162 NLVFMGMGEPLMNYDTLVKSLHTLRDDKAFGFSSRRMTVSTAGVPGRMTELVTSGLARLA 221 Query: 241 ISLHAVSNDLRNILVPIN-RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 +SLHA + +LR ++P R +PL L++ + P L R TFEY+++ G+ND+ + A Sbjct: 222 VSLHAPTQELRERIMPRAARMHPLPALMEELKKLP-LRPQERTTFEYILIGGLNDTQQHA 280 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L+++L + AKINLI NP + + I F + ++ G + +R +G DI Sbjct: 281 RELVRLLSHVRAKINLIACNPAKDSPFAAPTMEAIEAFQQVLRDKGLVAMLRKSKGQDIE 340 Query: 360 AACGQLKSLSKRIPKVPRQ 378 AACGQL + ++ Q Sbjct: 341 AACGQLVTQKQKEQARTEQ 359 >gi|150026118|ref|YP_001296944.1| hypothetical protein FP2080 [Flavobacterium psychrophilum JIP02/86] gi|205829761|sp|A6H1B8|RLMN_FLAPJ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|149772659|emb|CAL44142.1| Protein of unknown function YloN [Flavobacterium psychrophilum JIP02/86] Length = 347 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 126/368 (34%), Positives = 205/368 (55%), Gaps = 24/368 (6%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 ++K+ + + +++L + + + R +Q+++W++ +G F+ M+++S+ R Sbjct: 2 QIEKKDIRALSKDQLRDFF----VINKDKAFRGNQVYEWLWSKGAHSFEDMTNVSKGTRQ 57 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 +L ++F I + ++ + S DGT K +R I +E+V IP ++R T CVSSQV Sbjct: 58 MLVENFVINHIKVDTMQRSSDGTVKNAVRLHDGLI-----VESVLIPTETRTTACVSSQV 112 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GCSL C+FC T K +RNL EI QVL I+ R +SNI Sbjct: 113 GCSLDCNFCATARLKRMRNLEPGEIYDQVLA-------------IDRESKLYFNRPLSNI 159 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241 V MGMGEPL N++NV K++ + + S GL S +RIT+STSG I ++ + E+ LA+ Sbjct: 160 VFMGMGEPLMNYNNVIKAIDMITSSEGLGMSPKRITVSTSGVSKMIKKMADDEVKFKLAV 219 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH+ ++RN ++P + +PL L +A Y +IT+EYV+ KGIND+ Sbjct: 220 SLHSAVEEIRNKIMPFTKSFPLPELREAL-QYWYHKTKSKITYEYVVWKGINDNKESVDA 278 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L+K K +P K+NLI +NP E+ + + I + + ++ +G + +R RG DI AA Sbjct: 279 LVKFCKHVPCKVNLIEYNPIDDGEFQQASPESINAYIKALEANGIIAKVRHSRGKDIDAA 338 Query: 362 CGQLKSLS 369 CGQL + Sbjct: 339 CGQLANKE 346 >gi|157164532|ref|YP_001467818.1| radical SAM protein [Campylobacter concisus 13826] gi|205829689|sp|A7ZGB0|RLMN_CAMC1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|112801745|gb|EAT99089.1| radical SAM enzyme, Cfr family [Campylobacter concisus 13826] Length = 381 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 142/381 (37%), Positives = 217/381 (56%), Gaps = 42/381 (11%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++L+ + EEL+E + R +QI++W+Y + +F M ++ +++R L + Sbjct: 2 KNLLDLSIEELKELV--------SPSFRATQIYEWVYKKNATEFSQMLNLPKDMRQDLAE 53 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------------R 113 F + + V + S DG+ K+L ++IE+V +P K R Sbjct: 54 KFYLDPLKCVKFEQSSDGSIKYLFELKD-----GLKIESVLLPMKEEISDEDGKISRHAR 108 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 T+CVSSQVGC + C+FC T LVRNLTA EI+ Q+L + Sbjct: 109 YTICVSSQVGCKMGCAFCLTAKGGLVRNLTAGEIVGQILWIKREN--------------K 154 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233 + N+V MGMGEPL N NV K++ I + + GL+ S RR T+STSG I ++GE Sbjct: 155 IPYERRINVVYMGMGEPLDNLTNVSKAIKILALNEGLAISPRRQTVSTSGLGSQIKKLGE 214 Query: 234 -EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 ++GV+LAISLHAV+N+LR+ L+PIN+ Y +E ++DA R +P + +R+ FEY+++K + Sbjct: 215 MDLGVLLAISLHAVTNELRSRLMPINKAYNIEAVMDAVRGFP-IDMRKRVMFEYLVIKDL 273 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 NDS DA L+K+L GI AK+NLI FNP G E+ + ++ F E ++ G + IR Sbjct: 274 NDSVSDAKKLVKLLHGIKAKVNLIYFNPHEGSEFGRPELASMLKFQEYLRDHGVTCTIRQ 333 Query: 353 PRGLDILAACGQLKSLSKRIP 373 +GLDI AACGQLK ++ Sbjct: 334 SKGLDISAACGQLKQRNENPK 354 >gi|89890089|ref|ZP_01201600.1| radical SAM domain protein [Flavobacteria bacterium BBFL7] gi|89518362|gb|EAS21018.1| radical SAM domain protein [Flavobacteria bacterium BBFL7] Length = 346 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 124/365 (33%), Positives = 198/365 (54%), Gaps = 24/365 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ + +++L E + G R +Q+++W++ +G F M+++S++ R L Sbjct: 5 KKDIRSYTQDQLREYFVDQG----QQAFRGNQVYEWLWKKGAHHFDDMTNLSKDTRAFLQ 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +HF I + + + S DGT K ++ + +E+V IP +R T CVSSQVGCS Sbjct: 61 EHFVINHIRVDHMQRSKDGTIKNAVKLHD-----GLTVESVMIPTPTRTTACVSSQVGCS 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T K +RNL +EI QV+ I+ R +SNIV M Sbjct: 116 LNCEFCATARLKRMRNLNPDEIYDQVVA-------------IDQQSKNYHNRPLSNIVFM 162 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLH 244 GMGEPL N+ NV KS+ + GL S +RITLSTSG + ++ ++ LA+SLH Sbjct: 163 GMGEPLMNYKNVIKSIDKITGDDGLGMSPKRITLSTSGVPKMMKKLADDRPRFNLALSLH 222 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 + ++ R ++P N ++PLE + +A R++ + R+T+EYV+ KGIND+ D LI+ Sbjct: 223 SAIDEKRVKIMPFNEQFPLEDIKEALRYWYDKT-GTRVTYEYVVWKGINDTKEDIDALIE 281 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 K IP K+N+I +N + + ++ + + + R G++ +R RG DI AACGQ Sbjct: 282 FCKVIPCKVNIIEYNSIDDARFEQASKQAVDAYERELNRYGFTVNVRRSRGKDIDAACGQ 341 Query: 365 LKSLS 369 L + Sbjct: 342 LANKE 346 >gi|159025948|emb|CAO86242.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 337 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 126/360 (35%), Positives = 185/360 (51%), Gaps = 31/360 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+ EEL + + G P R Q+ +W+Y +G+ +S QE R L + Sbjct: 3 LLAKSLEELTDWVKDQGQPA----YRGKQLHQWLYEKGVHSLADISVFPQEWRSKLAD-Y 57 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 I I ++ D TRK+LL+ I IE V IP + R T+CVSSQVGC + C Sbjct: 58 PIGRSLIHYRSVAPDRTRKYLLKLADGLI-----IEAVGIPSEKRLTVCVSSQVGCPMAC 112 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG RNL A EI+ QVL + +++S++V MGMG Sbjct: 113 DFCATGKGGFTRNLKAYEIVDQVLTVQE-----------------DFQQRVSHVVFMGMG 155 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVS 247 EPL N V ++ + +G +R +T+ST G I ++ E + V A+SLHA + Sbjct: 156 EPLLNIPEVVTAIHSLNQDVG--IGQRCLTISTVGLPHKIKQLAEHNLQVTFAVSLHASN 213 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 +R L+P YPL LI C+ Y ++ R+TFEY++L G+ND P A L+K++K Sbjct: 214 QQVRAKLIPSADHYPLTNLIQDCQEYVQITGR-RVTFEYILLAGVNDLPEHARELVKLVK 272 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 G + +NLIP+NP +Y D+K I F +++ + +R RGL AACGQL+S Sbjct: 273 GFQSHVNLIPYNPIQEVDYQRPDEKRIKAFKTILEQEKVAVTVRYSRGLAADAACGQLRS 332 >gi|292670255|ref|ZP_06603681.1| cfr family radical SAM enzyme [Selenomonas noxia ATCC 43541] gi|292648207|gb|EFF66179.1| cfr family radical SAM enzyme [Selenomonas noxia ATCC 43541] Length = 346 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 131/363 (36%), Positives = 193/363 (53%), Gaps = 26/363 (7%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 ++ G +E L +L + IP R R QI +W+Y RG M ++ +E+R L + Sbjct: 2 NIFGWTKEALAASLREHQIP----RFRADQIVRWMYQRGAVSLHAMDNLPKELRARLAEI 57 Query: 68 FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 FSI P ++ S DG T K L F ETV + ++CVS+Q GC + Sbjct: 58 FSIERPAVISRLHSADGATIKLLYEF-----ADGQTAETVLMRHAYGNSVCVSTQAGCRM 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC + L RNLTA EI QV+ + + G + IV+MG Sbjct: 113 GCAFCASTLNGLQRNLTAGEIAAQVIGIADF--------------LRAEGGHVDTIVVMG 158 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 GEPL N+DNV +L + + + S R ITLSTSG VP I R+ EE I + L+ISLHA Sbjct: 159 SGEPLENYDNVVAALRLLHEDYTIGLSYRGITLSTSGIVPGIERLAEEGIPISLSISLHA 218 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + +LR+ ++P+NR YPL ++ A Y + R+T+EY++++ +ND PRDA L K+ Sbjct: 219 PTEELRSEIMPVNRMYPLADVLRAACFYAERTKR-RVTYEYILIRDVNDGPRDAEQLAKL 277 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G A +NLIP NP D+ I F + + + ++ +R G DI AACGQL Sbjct: 278 LRGQLASVNLIPINPVAERSLFRPDKAAIRRFQKILAQRHITATLRREMGTDIQAACGQL 337 Query: 366 KSL 368 ++ Sbjct: 338 RNR 340 >gi|298208115|ref|YP_003716294.1| hypothetical protein CA2559_07736 [Croceibacter atlanticus HTCC2559] gi|83848036|gb|EAP85906.1| hypothetical protein CA2559_07736 [Croceibacter atlanticus HTCC2559] Length = 346 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 128/365 (35%), Positives = 200/365 (54%), Gaps = 24/365 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ + + +E+L + + G R +Q+++W++ +G F+ M++IS+E R +L Sbjct: 5 KKDIRALSKEQLRDFFVSEGDKA----FRGNQVYEWLWNKGAHTFEEMTNISKETRDMLE 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +F I + + + S DGT K ++ + +E+V IP SR T CVSSQVGCS Sbjct: 61 ANFVINHILVDQMQRSSDGTIKNAVKLHD-----GLTVESVLIPTASRTTACVSSQVGCS 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T K +RNL +EI QV+ + R +SNIV M Sbjct: 116 LDCKFCATSRLKRMRNLNPDEIYDQVVAIDRESRLY-------------HDRPLSNIVFM 162 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLH 244 GMGEPL N++NV KS+ + GL S RRIT+STSG I ++ EE+ LA+SLH Sbjct: 163 GMGEPLMNYNNVLKSIEKITSEDGLGMSPRRITVSTSGVPKIIKKMADEEVKFNLAVSLH 222 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 + +++R ++P N +PL+ L ++ ++ + + IT+EYV+ K IND D L+K Sbjct: 223 SAIDEVRTKIMPFNEHFPLKDLRESLEYWYAKTGKQ-ITYEYVVWKDINDRTEDIDALVK 281 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 K +P+K+NLI +NP E+ + I + ++R+ + +R RG DI AACGQ Sbjct: 282 FCKYVPSKVNLIEYNPIDDGEFQQAPDAAINAYVNALERNNITVTVRRSRGKDIDAACGQ 341 Query: 365 LKSLS 369 L + S Sbjct: 342 LANKS 346 >gi|147678122|ref|YP_001212337.1| Fe-S-cluster redox protein [Pelotomaculum thermopropionicum SI] gi|205829798|sp|A5D1B6|RLMN_PELTS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|146274219|dbj|BAF59968.1| predicted Fe-S-cluster redox enzyme [Pelotomaculum thermopropionicum SI] Length = 368 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 127/368 (34%), Positives = 191/368 (51%), Gaps = 32/368 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 + ++ + LE L +G R R Q+ W++ +G F+ M+++ +R L Sbjct: 17 DRINVKDLTLAGLERLLTGMGAE----RYRAGQVAIWVFQKGAESFREMTNLPANLREKL 72 Query: 65 NQHFSIIYPEIVDEKISC--DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + I PEI+ +K+S D K+L P +E+V++ ++CVS+Q Sbjct: 73 DAAAVISRPEILAKKVSSKKDA-VKYLFGLPD-----GQAVESVFMKHAYGNSVCVSTQA 126 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC + L RNL+ EI QVL R G+ +IS++ Sbjct: 127 GCRMGCRFCASALGGLTRNLSPGEIYDQVLGIRRDTGE-----------------RISSV 169 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 V+MG GEPL N+D + + GL R IT+ST G VP I R+ E + + LA+ Sbjct: 170 VLMGSGEPLDNYDATLTFIKNVTAPYGLHIGCRHITVSTCGLVPGIRRLAREKLALTLAV 229 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++ LR+ILVP+NRKYPL L+ ACR Y + R+TFEY +L G+ND A Sbjct: 230 SLHAPNDRLRDILVPVNRKYPLTELMAACRDYAQETGR-RVTFEYALLAGVNDRKEHAEE 288 Query: 302 LIKILKG-IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L+++LKG +P +NLIP NP P + + F + ++R G + +R G DI A Sbjct: 289 LVRLLKGKMPCHVNLIPANPVPERGVKTPSRLQVELFKKILERHGLAVTVRRGLGADIDA 348 Query: 361 ACGQLKSL 368 ACGQL+ Sbjct: 349 ACGQLRRK 356 >gi|148244511|ref|YP_001219205.1| Fe-S-cluster redox enzyme [Candidatus Vesicomyosocius okutanii HA] gi|205829924|sp|A5CX33|RLMN_VESOH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|146326338|dbj|BAF61481.1| Fe-S-cluster redox enzyme [Candidatus Vesicomyosocius okutanii HA] Length = 356 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 152/373 (40%), Positives = 211/373 (56%), Gaps = 24/373 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K++L+ + ++ L + + +G RT QI +WIY DF M + S+ +R Sbjct: 1 MNKQNLLSLNQDALNDFFVCLG----EKHYRTKQIMQWIYKVHEFDFDKMFNFSKSLREE 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 LN+ I +P++V +K + D KW+L IE VYIPEK RGTLC+SSQVG Sbjct: 57 LNKIACIEFPKVVKQKFALDKVIKWVLALSEDNY-----IEMVYIPEKDRGTLCISSQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L C+FC TG Q +NLT EI+ QVL+A + S ++ISNIV Sbjct: 112 CALACTFCSTGMQGFNKNLTTAEIIAQVLIANKY--------------LNSKTKRISNIV 157 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MGMGEPL N V + + D + S+R++T+STSG VP+I R+ + V LAISL Sbjct: 158 FMGMGEPLLNEQAVYNACDLLLDDLAFGLSRRKVTISTSGIVPSILRMSKRTPVSLAISL 217 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALNL 302 HA +N LR+ LVP+N+KY +E L+ AC+ Y R I FEYVMLK +NDS A L Sbjct: 218 HAPNNQLRDKLVPVNQKYSIEELLKACKVYLNAGTQERHILFEYVMLKDVNDSTEHANKL 277 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K+LK I AK+NLIPFN + +Y S+ + I F + + + G + +R RG DI AC Sbjct: 278 AKLLKAISAKVNLIPFNSFERTQYQSSNAQTIEKFQDILYQQGIRTMMRRTRGEDIDGAC 337 Query: 363 GQLKSLSKRIPKV 375 GQL K Sbjct: 338 GQLAGKVLNKTKK 350 >gi|37521648|ref|NP_925025.1| hypothetical protein gll2079 [Gloeobacter violaceus PCC 7421] gi|81709852|sp|Q7NIV3|RLMN_GLOVI RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|35212646|dbj|BAC90020.1| gll2079 [Gloeobacter violaceus PCC 7421] Length = 348 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 130/364 (35%), Positives = 191/364 (52%), Gaps = 31/364 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L+G EEL + G P R Q+ +W+Y RG+R ++D + R ++ Sbjct: 3 TPLLGQSAEELRIWVESQGQPA----YRAQQLHRWLYQRGVRSLMEITDWPKAWREQVHS 58 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + ++V + + DGT K+LL +ETV IP R T+CVSSQVGC + Sbjct: 59 -VPVGRSQVVRQSAAADGTIKYLL-----AGADGETVETVGIPAAERLTVCVSSQVGCPM 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG RNL EI+ QVL + GR++S++V MG Sbjct: 113 ACRFCATGQSGFARNLGVHEIVDQVLTVQE-----------------GFGRRVSHVVFMG 155 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHA 245 MGEPL N V ++L + + + +R+IT+ST G I R+G ++ + LA+SLHA Sbjct: 156 MGEPLLNLGAVVQALRVLNGD--IGIGQRQITVSTVGVPGQIRRLGTYKLQITLAVSLHA 213 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + DLR L+P + YP+E L++ CR Y +N R++FEY +L GIND P A L I Sbjct: 214 PNQDLRLKLIPTAQHYPIEELLEDCRDYVETTNR-RVSFEYTLLAGINDEPHHARELAAI 272 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G + +NLIP+NP G EY + + F + R ++ +R RGL+ AACGQL Sbjct: 273 LRGFQSHVNLIPYNPIEGVEYERPGEARVRAFERELVRHKIAASVRHTRGLEEAAACGQL 332 Query: 366 KSLS 369 + S Sbjct: 333 RRRS 336 >gi|312622709|ref|YP_004024322.1| radical sam enzyme, cfr family [Caldicellulosiruptor kronotskyensis 2002] gi|312203176|gb|ADQ46503.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor kronotskyensis 2002] Length = 341 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 123/365 (33%), Positives = 190/365 (52%), Gaps = 31/365 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K + + +EL+ L +G R +QI++W+Y + D +++ E+R + Sbjct: 2 KRFIKDLTIDELKIWLESVG----EKPFRATQIFEWLYKKNATDVMQFTNLPLELRKKIY 57 Query: 66 QHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 F + +I+ + DG + K+L + IE+V++P + +CVS+QVGC Sbjct: 58 DEFLMNSLQILQHQ--SDGESIKFLFELCDKN-----GIESVFLPYRYGNAVCVSTQVGC 110 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC + VRNLT E++ Q++ A + G ++I+N+V+ Sbjct: 111 KMNCGFCASAIGGFVRNLTPGEMVDQIISAENFTG-----------------KRITNVVL 153 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243 MG GEP N +NV K + I + G + R IT+ST G V I R+ + V LAISL Sbjct: 154 MGSGEPFDNIENVFKFIEIINSKDGKNIGARHITISTVGIVEGIYRLCDFPKQVNLAISL 213 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +N LR+ LVPIN+KYP+E ++ A +Y +N R+TFEY ++ G+NDS A L Sbjct: 214 HAPNNSLRDKLVPINKKYPIEDIMKAVDYYIQKTNR-RVTFEYALIDGVNDSIDCAQELG 272 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +ILKG +NLIP NP + ++ I F E +K + IR G I AACG Sbjct: 273 RILKGKLVHVNLIPVNPVEEKGFRRPSKEKIKVFFETLKSYQINVTIRRELGSSISAACG 332 Query: 364 QLKSL 368 QL+ Sbjct: 333 QLRKR 337 >gi|254415410|ref|ZP_05029171.1| radical SAM enzyme, Cfr family [Microcoleus chthonoplastes PCC 7420] gi|196177885|gb|EDX72888.1| radical SAM enzyme, Cfr family [Microcoleus chthonoplastes PCC 7420] Length = 359 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 126/365 (34%), Positives = 185/365 (50%), Gaps = 31/365 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K L+G EL + + + G P R Q+ WIY +G R +S S+ R L Sbjct: 24 KTPLLGASLAELTQWVEQQGQPA----YRGRQLHNWIYQKGARRLSEISVFSKSWRQALV 79 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I + + D T K+LLR I IETV IP +R T+CVSSQVGC Sbjct: 80 D-VPIGRSTLHYRSQAPDRTVKYLLRLADGNI-----IETVGIPTANRLTVCVSSQVGCP 133 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG RNL EI+ QVL + G+++SN+V M Sbjct: 134 MACDFCATGKGGFTRNLQPHEIVDQVLTVQE-----------------DFGQRVSNVVFM 176 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 GMGEPL N + V ++ + +G+ R T+ST G I ++ E + + A+SLH Sbjct: 177 GMGEPLLNLEGVLAAVRSLNQDIGIGM--RSQTISTVGIRDRIRQLAEHKLQLTFAVSLH 234 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A + LR L+P ++YPL L+ CR Y ++ R+TFEY++L G+ND P + L + Sbjct: 235 ASNQQLREQLIPSAKRYPLTDLLQECRDYVKITGR-RVTFEYILLAGLNDQPEHGIELAQ 293 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 L+G + +NLIP+NP +Y + I F E +K+ + +R RGL+ AACGQ Sbjct: 294 HLRGFQSHVNLIPYNPISEVDYQRPSPRRIQAFVETLKQHNIAVSVRRSRGLEKDAACGQ 353 Query: 365 LKSLS 369 L++ + Sbjct: 354 LRAST 358 >gi|162447121|ref|YP_001620253.1| radical SAM superfamily Fe-S oxidoreductase [Acholeplasma laidlawii PG-8A] gi|205829657|sp|A9NEU7|RLMN_ACHLI RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|161985228|gb|ABX80877.1| Fe-S-cluster redox enzyme, radical SAM superfamily [Acholeplasma laidlawii PG-8A] Length = 338 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 129/362 (35%), Positives = 206/362 (56%), Gaps = 28/362 (7%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 + + EELEE +++ G + R QIW W+Y + I F M++I +++ LLN ++ Sbjct: 3 IYDLTYEELEEFIVENGY----KKFRADQIWNWLYKQKIEAFSEMNNIPEDIIKLLNDNY 58 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 + E V + S DGT K+L + IETV + + CV++QVGC++ C Sbjct: 59 TFAGLETVIKNTSADGTIKFLFDLKDANL-----IETVLMSHNYGMSACVTTQVGCNIGC 113 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 SFC +G K R+LTA EI+ Q++ A G ++S+IV+MG+G Sbjct: 114 SFCASGVLKKKRDLTAGEIVAQIIRAEK-----------------ESGVRVSSIVIMGIG 156 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVS 247 EP N+ N K +SI + GL+ R IT+STSG VP I I V LA+SLHA + Sbjct: 157 EPFDNYKNFVKFISIVNHPKGLAIGARHITVSTSGLVPKIKEFAHLGIQVNLAVSLHAPN 216 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 N++R+ L+ IN ++ +E ++DA ++Y ++N R+T EY+M++ +NDS A+ L K+LK Sbjct: 217 NEIRSKLMKINDRFKVEEVVDAIKYYIHVTNR-RVTIEYIMIQDLNDSVETAVELAKLLK 275 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 G+ +NLIP+N +Y S ++ + F + +K ++ +R +G DI AACGQL+S Sbjct: 276 GMNVYVNLIPYNTVKEADYQRSSLENRLAFHKTLKEHKITAILRKEQGHDINAACGQLRS 335 Query: 368 LS 369 + Sbjct: 336 QN 337 >gi|260889579|ref|ZP_05900842.1| radical SAM enzyme, Cfr family [Leptotrichia hofstadii F0254] gi|260860990|gb|EEX75490.1| radical SAM enzyme, Cfr family [Leptotrichia hofstadii F0254] Length = 365 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 131/372 (35%), Positives = 204/372 (54%), Gaps = 26/372 (6%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 +N ++K ++GM E L++ ++IG+ + SQ++ W++ + + DF S+IS++ Sbjct: 11 INTIEKIDILGMDLESLQKKFVEIGL----KKFNASQVFDWLHNKLVFDFDEFSNISKKD 66 Query: 61 RHLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119 R +L + F + E ++S DG T K+L R + IE+V I K+R TLCVS Sbjct: 67 REILKERFYVAKLEFKTHQVSEDGDTEKFLFELKDRRL-----IESVLISHKNRHTLCVS 121 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 SQ+GC + C FC T T RNL+ EILLQ + + G K+ Sbjct: 122 SQIGCLIGCDFCATATMTYERNLSISEILLQYYYVQKH--------------LLQRGEKL 167 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVM 238 N+V MGMGEP N+D V S+++ + G +FSKR T+STSG V I R E E + Sbjct: 168 GNVVYMGMGEPFLNYDAVLGSINMLNSPKGQNFSKRNFTISTSGIVNGIKRFTENENQIN 227 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LAISLH+V +D+R+ ++PIN+++ ++ L ++ Y + RITFEY+++ +N P D Sbjct: 228 LAISLHSVKDDVRSEIMPINKRWGVKQLKESLLEYQKQT-KNRITFEYILIDDLNCEPED 286 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L L +NLIP+NP G Y ++ F + +K + +R +G DI Sbjct: 287 ARELAGFLNSFSCLVNLIPYNPVGGKPYKRPSKQKQREFYKLLKDKNVNVTLRETKGQDI 346 Query: 359 LAACGQLKSLSK 370 AACGQLK+ + Sbjct: 347 AAACGQLKAKKQ 358 >gi|242277580|ref|YP_002989709.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio salexigens DSM 2638] gi|242120474|gb|ACS78170.1| radical SAM enzyme, Cfr family [Desulfovibrio salexigens DSM 2638] Length = 351 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 128/372 (34%), Positives = 202/372 (54%), Gaps = 23/372 (6%) Query: 1 MNFLKK-ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59 M+ K ++ + ELE + + R RT QIW+W++ +G+ DF M+++++ Sbjct: 1 MSDNNKMIDILDLEYSELESFVS---QELKAPRFRTDQIWQWLWQKGVEDFDSMTNLAKN 57 Query: 60 VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119 +R L I +P++ + S DGT K LLR + +ETV IP + R T C+S Sbjct: 58 LRDELKAKAVINHPQVDVVQTSKDGTIKLLLRLKDGAL-----VETVLIPMEGRYTQCLS 112 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 +QVGC++ C+FC TG RN++ E+L QVL R L + + Sbjct: 113 TQVGCAMACTFCNTGLMGFERNMSMSEMLGQVLAGRKYLRENNLD-------------PL 159 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 N+V MGMGEPL N DN+ ++L ++ GLSF RRIT+S+ GFV + +G+ + Sbjct: 160 KNLVFMGMGEPLLNLDNLIRTLRNLNNQDGLSFVPRRITVSSVGFVKQLEELGKTGLTLP 219 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 AISLHA + +LR ++P K +E L+ A +P L ++T+EY++L G+NDS A Sbjct: 220 AISLHAPTQELREKIMPKAAKTHIEDLLAAMDRFP-LKPREKVTYEYLLLGGVNDSIEHA 278 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L+K+L K+NLI +NP Y ++ ++ F + + ++ IR G DI Sbjct: 279 KQLVKLLGHRRCKVNLIAYNPGDEPLYKAPTREKVLAFEKYLWDKKITATIRRSMGQDIK 338 Query: 360 AACGQLKSLSKR 371 AACGQLK+ ++ Sbjct: 339 AACGQLKADQQK 350 >gi|269468799|gb|EEZ80403.1| hypothetical protein Sup05_0839 [uncultured SUP05 cluster bacterium] Length = 358 Score = 398 bits (1022), Expect = e-109, Method: Composition-based stats. Identities = 155/378 (41%), Positives = 210/378 (55%), Gaps = 26/378 (6%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 K++L G+ + EL+ K+G RT Q KWIY + DF M ++S+E+R Sbjct: 1 MQNKQNLFGLSQSELDTFFSKLG----EKPYRTKQFMKWIYHQHEFDFNQMLNLSKELRQ 56 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L Q ++ P+I + + DG KWL+ G IE VYIPEK RGTLC+SSQV Sbjct: 57 KLLQVATLELPKISSQNFASDGLIKWLIDL-----GSDNHIEMVYIPEKDRGTLCISSQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GCSL C+FC TG Q RNLT + I + +KISN+ Sbjct: 112 GCSLACTFCSTGMQGFNRNLTT--------------AEIIAQIIIANEHLSHENKKISNV 157 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 V MGMGEPL N +V + + D + S+R++T+STSG VP + R+ + V LAIS Sbjct: 158 VFMGMGEPLLNEKSVYSACDLLLDDLAFGLSRRKVTISTSGVVPALYRMAQTTPVSLAIS 217 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALN 301 LHA ++LR+ LVPIN+KYP+E L+ AC++Y R I FEYVML G+ND+ A Sbjct: 218 LHAPDDELRDELVPINQKYPIEELMAACKNYLTSGTQERHILFEYVMLDGVNDTMEHAKK 277 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L K+L+GI AK+NLIPFNP+P +Y S I F + + ++G + R RG D+ A Sbjct: 278 LAKLLRGISAKVNLIPFNPFPKTQYKTSKAFTIKQFQDVLFQAGIRTMTRRTRGEDVDGA 337 Query: 362 CGQLKSLSKRIPKVPRQE 379 CGQL I K R E Sbjct: 338 CGQLAGKV--IDKTRRTE 353 >gi|126659786|ref|ZP_01730913.1| hypothetical protein CY0110_11217 [Cyanothece sp. CCY0110] gi|126618938|gb|EAZ89680.1| hypothetical protein CY0110_11217 [Cyanothece sp. CCY0110] Length = 342 Score = 398 bits (1022), Expect = e-109, Method: Composition-based stats. Identities = 127/363 (34%), Positives = 188/363 (51%), Gaps = 31/363 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+G E+L + + + G P R Q+ +W+Y +G R +S + R L + Sbjct: 10 LLGKSVEQLTDWVKQQGQPA----YRGKQLHQWLYQKGARSLTDISVFPKTWREELKD-Y 64 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 I I I+ D TRK+LL I IETV IP R T+CVSSQVGC + C Sbjct: 65 QIGRSNIYHRTIADDQTRKYLLSLGDELI-----IETVGIPTSKRLTVCVSSQVGCPMNC 119 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG R+LT EI+ QVL + +++S++V MGMG Sbjct: 120 DFCATGKGGYTRDLTCAEIVDQVLTVQE-----------------DFQQRVSHVVFMGMG 162 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVS 247 EPL N V K++ I + +G +R +T+ST G I + ++ V A+SLHA + Sbjct: 163 EPLLNLKEVIKAVKILNQDVG--IGQRSLTISTVGIPKKILELAHRKLQVTFAVSLHAPN 220 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 LR L+P + YPL L+ CR Y ++ R++FEY++L G+NDS A+ L K LK Sbjct: 221 QTLREQLIPSAKYYPLPKLLADCRKYVEITGR-RVSFEYILLGGVNDSSEQAIQLAKCLK 279 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 G + +NLIP+NP +Y D + I F ++ + +R RGL+ AACGQL++ Sbjct: 280 GFQSHVNLIPYNPIEEADYQRPDTQSINLFRNVLEEQKIAVSVRYSRGLEANAACGQLRA 339 Query: 368 LSK 370 +S+ Sbjct: 340 MSQ 342 >gi|148655521|ref|YP_001275726.1| ribosomal RNA large subunit methyltransferase N [Roseiflexus sp. RS-1] gi|205829870|sp|A5UT23|RLMN_ROSS1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|148567631|gb|ABQ89776.1| radical SAM enzyme, Cfr family [Roseiflexus sp. RS-1] Length = 399 Score = 398 bits (1022), Expect = e-109, Method: Composition-based stats. Identities = 132/401 (32%), Positives = 196/401 (48%), Gaps = 43/401 (10%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN +L + E+E + G P R QI++ +YV + M+D+ + Sbjct: 2 MNQDTLPNLYDLSLAEMERLMTAWGQPA----YRARQIFRQLYVNLVDSPLAMTDLPLAL 57 Query: 61 RHLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119 R L + ++ G TRK L R V IE+V + R T+CVS Sbjct: 58 RERLVAETRLAPLAPEQVHVADQGLTRKALFRLE-----NGVLIESVLMIYPDRATVCVS 112 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG--- 176 +Q GC + C FC TGT L+RNL+ +I+ QV+ A + F I + P Sbjct: 113 TQAGCGMGCVFCATGTLGLLRNLSPGDIVAQVVWAAREMRRFAAERCISPSLAPPDDDSW 172 Query: 177 -------------------RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217 ++SNIV MGMGEP N+D +++ I D GL+ R + Sbjct: 173 WTPDTLEDQGSSEARSISVSRLSNIVFMGMGEPFANYDRWWRAVEILHDPRGLNMGARSM 232 Query: 218 TLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276 T+ST G +P I R+ E + + LAISLHA + LR+ L+P+NR+YPL L++A R Y Sbjct: 233 TVSTVGLIPGIRRLATETLPINLAISLHAPDDALRSALMPVNRRYPLAALLEATRDYLAA 292 Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKG---------IPAKINLIPFNPWPGCEYL 327 + R++FEYV+L+G ND P A L +L G +NLIP+NP PG Sbjct: 293 TGR-RVSFEYVLLQGKNDEPEHAAKLAALLHGEAGTTPLPLHLVHVNLIPWNPVPGMPLG 351 Query: 328 CSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 S+++ ++TF ++ G + +R RG+ I AACGQL Sbjct: 352 RSERRRVLTFQRILRERGIACTVRVERGVSIAAACGQLAGA 392 >gi|229826168|ref|ZP_04452237.1| hypothetical protein GCWU000182_01540 [Abiotrophia defectiva ATCC 49176] gi|229789038|gb|EEP25152.1| hypothetical protein GCWU000182_01540 [Abiotrophia defectiva ATCC 49176] Length = 348 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 115/363 (31%), Positives = 195/363 (53%), Gaps = 29/363 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + ++ + +EL + ++G P RT QI++WI+ + ++ + M+++ +R+ L+ Sbjct: 5 RNDIVSLNFDELASLIKELGEPA----FRTKQIYEWIHKKLVKGYDEMTNVPLALRNKLS 60 Query: 66 QHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + V K S G T K++ + + IE+V + + ++C+SSQVGC Sbjct: 61 ERLPFPELTEVARKDSASGDTSKFVFKLYDGYV-----IESVLMKYRYGNSVCISSQVGC 115 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L R L E+L Q+ + G+ ++SN+V+ Sbjct: 116 RMGCTFCASTLLGLSRQLAPSEMLSQIYTIQRETGE-----------------RVSNVVV 158 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG GEPL NFDN+ K + + +D GL+ S+R IT+ST G NI R+ ++ + LAISL Sbjct: 159 MGTGEPLDNFDNLIKFIELLTDEKGLNISQRNITVSTCGLTENIKRLADKKFAITLAISL 218 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++ R ++PI KY + +++A +Y + RI++EY ++ G ND+P +A L Sbjct: 219 HAPTDEDRKRIMPIANKYTISEIMEATDYYFDKTGR-RISYEYSLIDGENDTPENAEKLA 277 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LKG +NLIP NP Y S K ++ F + ++ G + IR G DI AACG Sbjct: 278 VLLKGKNCHVNLIPVNPIKERTYRSSTPKGVIRFKKILENRGINVTIREEMGQDIDAACG 337 Query: 364 QLK 366 QL+ Sbjct: 338 QLR 340 >gi|312793230|ref|YP_004026153.1| radical sam enzyme, cfr family [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180370|gb|ADQ40540.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 344 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 119/365 (32%), Positives = 188/365 (51%), Gaps = 31/365 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K + + +E + L +G R +Q+++W+Y + D +++ E+R + Sbjct: 2 KRLIKDLTIDEFKIWLESVG----EKPFRATQVFEWLYKKNATDVMQFTNLPLELRKKIE 57 Query: 66 QHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 F I +I+ + DG + K+L + +E+V++P + +CVS+QVGC Sbjct: 58 DEFLINSLQILKYQ--SDGESIKFLFELCDKN-----GVESVFLPYRYGNAICVSTQVGC 110 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC + VRNL+ E++ Q++ A + G ++I+N+V+ Sbjct: 111 KMNCRFCASTIGGFVRNLSPGEMVDQIINAENFTG-----------------KRITNVVL 153 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243 MG GEP N +NV K + I + G + R IT+ST G V I R+ + V LAISL Sbjct: 154 MGSGEPFDNIENVFKFIEIINSKEGKNIGARHITISTVGIVEGIYRLCDFPKQVNLAISL 213 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +N LR+ LVPIN+KYP+E ++ A +Y +N R+TFEY ++ G+NDS A L Sbjct: 214 HAPNNSLRDKLVPINKKYPVEDIMKAVDYYIKRTNR-RVTFEYALIDGVNDSIECAQELG 272 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+LKG +NLIP NP + ++ I F E ++ IR G I AACG Sbjct: 273 KMLKGKLVHVNLIPVNPVEEKGFRRPSKEKIKAFFETLRSYQIQVTIRRELGSSISAACG 332 Query: 364 QLKSL 368 QL+ Sbjct: 333 QLRRR 337 >gi|301057688|ref|ZP_07198761.1| 23S rRNA m2A2503 methyltransferase [delta proteobacterium NaphS2] gi|300448149|gb|EFK11841.1| 23S rRNA m2A2503 methyltransferase [delta proteobacterium NaphS2] Length = 346 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 146/366 (39%), Positives = 207/366 (56%), Gaps = 25/366 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + L G+ E+E+ + G+ R QI WI R + F M ++ +++R L Sbjct: 1 MSLIDLKGLSAAEMEKWAVDNGMEA----YRGRQIRHWILTRFAKSFDEMDNLPKKLRSL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L + + + S DGTRK+L + IETV IPE+ TLCVSSQVG Sbjct: 57 LKEKAHLSSLRELKAIQSEDGTRKYLYQLQD-----GHSIETVLIPERDHLTLCVSSQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C FC TG Q +RNL EI+ QV+ + L + ++ NIV Sbjct: 112 CAMGCVFCATGKQGFIRNLKPGEIIEQVIRTKQSL---------------AFPDRLRNIV 156 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 +MGMGEPL N+D V K+L D G++FS R++TLST G VP I ++ ++I + LA+SL Sbjct: 157 LMGMGEPLANYDAVIKALRNIIDPDGMNFSHRKVTLSTCGLVPEIKKLAKDITINLAVSL 216 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 + N+ R+ L+PINRKYPLE LI+AC +P L N R ITFEY+++K ND RDA NL Sbjct: 217 NGADNETRSRLMPINRKYPLEALIEACSSFP-LPNRRMITFEYILIKDENDRDRDAHNLC 275 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++L G+ AKINLI N P + + ++ F E + +++ IR +G DILAACG Sbjct: 276 RLLSGLRAKINLIQLNAAPDSPFSIPSLEKVLHFQEILTDRHFTAIIRKSKGRDILAACG 335 Query: 364 QLKSLS 369 QLK S Sbjct: 336 QLKGTS 341 >gi|163848485|ref|YP_001636529.1| ribosomal RNA large subunit methyltransferase N [Chloroflexus aurantiacus J-10-fl] gi|222526414|ref|YP_002570885.1| ribosomal RNA large subunit methyltransferase N [Chloroflexus sp. Y-400-fl] gi|205829697|sp|A9WFY6|RLMN_CHLAA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|163669774|gb|ABY36140.1| radical SAM enzyme, Cfr family [Chloroflexus aurantiacus J-10-fl] gi|222450293|gb|ACM54559.1| radical SAM enzyme, Cfr family [Chloroflexus sp. Y-400-fl] Length = 376 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 128/385 (33%), Positives = 197/385 (51%), Gaps = 28/385 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +++ L EL E L G P R Q+++ +YV R M+D+ +R Sbjct: 5 MEQRCLYDYNLSELTELLQSWGEPA----FRARQLYRHLYVNLARQVDQMTDLPLALRSR 60 Query: 64 LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L + +I +G TRK L R P + +ETV + R T+CVS+Q Sbjct: 61 LAEI-PFSTLRCEQVQIGDNGMTRKALFRLPDGAV-----VETVLMVYPDRSTVCVSTQA 114 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L+RNL++ EI+ Q + A ++ M + ++SN+ Sbjct: 115 GCGMGCVFCATGQLGLLRNLSSGEIVAQAIWASQ---------ELRAMGMAGPTGRVSNL 165 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAI 241 V MGMGEP N+D +++ D G + R +T+ST G V I R+ E + + LAI Sbjct: 166 VFMGMGEPFANYDRWWQAVERLHDPQGFNLGARSMTVSTVGLVKGIERLANERLPINLAI 225 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA + LR+ L+P+NR+YP+ L+ A R+Y + RR++FEYV+L+G ND P A+ Sbjct: 226 SLHAPDDALRSELMPVNRRYPIADLMAATRNYIAKT-RRRVSFEYVLLQGKNDHPHQAIA 284 Query: 302 LIKILKG------IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 L ++L+ + +NLIP+NP PG S+ + + TF + + G +R RG Sbjct: 285 LARLLRHSAPRGPLLFHVNLIPWNPVPGTPLGRSEWERVTTFQQILTDYGIPCTVRVERG 344 Query: 356 LDILAACGQLKSLSKRIPKVPRQEM 380 ++I AACGQL QE+ Sbjct: 345 VEIAAACGQLAGRHSVPLNTVEQEI 369 >gi|75909016|ref|YP_323312.1| ribosomal RNA large subunit methyltransferase N [Anabaena variabilis ATCC 29413] gi|123772627|sp|Q3M9B9|RLMN_ANAVT RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|75702741|gb|ABA22417.1| 23S rRNA m(2)A-2503 methyltransferase [Anabaena variabilis ATCC 29413] Length = 355 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 128/365 (35%), Positives = 187/365 (51%), Gaps = 31/365 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 L+G EL + + G P R Q+ WIY +G+R +S S++ R + Sbjct: 21 PLLGASVTELTSWVQQQGQPA----YRGKQLHDWIYHKGVRSLTDISVFSKQWRAAVAD- 75 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 I I ++ DGT K+LL+ I +ETV IP R T+CVS+QVGC + Sbjct: 76 VPIGRSTIHHRSVASDGTVKYLLQLSDGEI-----VETVGIPTDKRLTVCVSTQVGCPMA 130 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC TG RNL EI+ QVL + +++S++V MGM Sbjct: 131 CDFCATGKGGYKRNLERHEIVDQVLTVQE-----------------DFQQRVSHVVFMGM 173 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 GEPL N +NV +L + +G +R +TLST G I+++ E + V LA+SLHA Sbjct: 174 GEPLLNTENVLAALRSLNQDVG--IGQRSLTLSTVGIRDRISQLAEHHLQVTLAVSLHAP 231 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 + LR L+P R Y +E L+ CR Y ++ RI+FEY++L G+ND P AL L K L Sbjct: 232 NQALREQLIPSARSYHIEDLLAECREYVAITGR-RISFEYILLAGVNDLPEHALELSKHL 290 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +G +NLIP+NP +Y I F +++ + +R RGL+ AACGQL+ Sbjct: 291 RGFQNHVNLIPYNPISEVDYKRPSGDRIQAFLTVLQQQHIAVSVRYSRGLEADAACGQLR 350 Query: 367 SLSKR 371 + + R Sbjct: 351 TKTSR 355 >gi|168182583|ref|ZP_02617247.1| radical SAM enzyme, Cfr family [Clostridium botulinum Bf] gi|237795945|ref|YP_002863497.1| ribosomal RNA large subunit methyltransferase N [Clostridium botulinum Ba4 str. 657] gi|182674240|gb|EDT86201.1| radical SAM enzyme, Cfr family [Clostridium botulinum Bf] gi|229262363|gb|ACQ53396.1| radical SAM enzyme, Cfr family [Clostridium botulinum Ba4 str. 657] Length = 342 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 134/362 (37%), Positives = 204/362 (56%), Gaps = 29/362 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 E+++ EEL+E L+ + R Q++ WIY + I DF M +I + ++LL+ Sbjct: 2 ENILDFTLEELKEWLIS----KEEKGFRAKQVFDWIYNKLIFDFNNMKNIPYKTKNLLSD 57 Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +F I P++V + +S D T K+L + + IE+V + K ++CVS+QVGC Sbjct: 58 NFYIGVPKVVKKLMSQDKNTYKFLFEYKDGNV-----IESVVMKYKHGNSICVSTQVGCR 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC + ++RNLT+ EIL Q++ A+ +G+ +ISN+V+M Sbjct: 113 MGCKFCASTLDGVIRNLTSGEILSQIMAAQKEIGE-----------------RISNVVLM 155 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244 G GEPL NF NV K L + + L+ +R ITLST G VP I + ++ + LAISLH Sbjct: 156 GSGEPLDNFKNVTKFLDLVTSDTTLNIGQRHITLSTCGIVPKIKELADKNYNITLAISLH 215 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 + + LR ++PI KY ++ L++AC +Y +N RITFEY ++KG NDS ++A L Sbjct: 216 SPEDLLRKEMMPIANKYSIKELMEACDYYINKTNR-RITFEYALVKGKNDSIKEAKKLST 274 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKG +NLIP N Y S K+I +F +K +G + IR G DI AACGQ Sbjct: 275 VLKGKLCHVNLIPVNEIKENSYEKSTSKNIESFGNILKENGIETTIRREMGADINAACGQ 334 Query: 365 LK 366 L+ Sbjct: 335 LR 336 >gi|312876958|ref|ZP_07736933.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor lactoaceticus 6A] gi|311796273|gb|EFR12627.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor lactoaceticus 6A] Length = 344 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 119/365 (32%), Positives = 187/365 (51%), Gaps = 31/365 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K + + +E + L +G R +Q+++W+Y + D +++ E+R + Sbjct: 2 KRLIKDLTIDEFKIWLESVG----EKPFRATQVFEWLYKKNATDVMQFTNLPLELRKKIE 57 Query: 66 QHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 F I I+ + DG + K+L + +E+V++P + +CVS+QVGC Sbjct: 58 DEFLINSLHILKYQ--SDGESIKFLFELCDKN-----GVESVFLPYRYGNAICVSTQVGC 110 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC + VRNL+ E++ Q++ A + G ++I+N+V+ Sbjct: 111 KMNCRFCASTIGGFVRNLSPGEMVDQIINAENFTG-----------------KRITNVVL 153 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243 MG GEP N +NV K + I + G + R IT+ST G V I R+ + V LAISL Sbjct: 154 MGSGEPFDNIENVFKFIEIINSKEGKNIGARHITISTVGIVEGIYRLCDFPKQVNLAISL 213 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +N LR+ LVPIN+KYP+E ++ A +Y +N R+TFEY ++ G+NDS A L Sbjct: 214 HAPNNSLRDKLVPINKKYPVEDIMKAVDYYIKRTNR-RVTFEYALIDGVNDSIECAQELG 272 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+LKG +NLIP NP + ++ I F E ++ IR G I AACG Sbjct: 273 KMLKGKLVHVNLIPVNPVEEKGFRRPSKEKIKAFFETLRSYQIQVTIRRELGSSISAACG 332 Query: 364 QLKSL 368 QL+ Sbjct: 333 QLRRR 337 >gi|298245810|ref|ZP_06969616.1| radical SAM enzyme, Cfr family [Ktedonobacter racemifer DSM 44963] gi|297553291|gb|EFH87156.1| radical SAM enzyme, Cfr family [Ktedonobacter racemifer DSM 44963] Length = 388 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 134/367 (36%), Positives = 191/367 (52%), Gaps = 23/367 (6%) Query: 19 EALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDE 78 E L G R QI+ WIY + + +F MS++ ++R L + I + E Sbjct: 31 EWLAARG----EATFRAKQIYSWIYQQLVDNFAAMSNLPLKLRQRLEEEACIGPLVVRSE 86 Query: 79 KISCD-GTRKWLLRFPARCIGGPVEIETVYIPEK------SRGTLCVSSQVGCSLTCSFC 131 S D TRK LL + IE+V + +R T+CVSSQ GC+ C+FC Sbjct: 87 VSSKDDRTRKILLELADGKL-----IESVLMLYPPLGESSARATICVSSQAGCAFGCTFC 141 Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191 TG R+L + EI+ QVL L P P I+NIV+MGMGEPL Sbjct: 142 ATGQMGFDRHLQSGEIIAQVLHFARELRATPWSAAGLPGSTPID--HITNIVLMGMGEPL 199 Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDL 250 N+DNV ++L I + + G + R +T+ST G VP I ++ +E + V LAISLHA +N+ Sbjct: 200 HNYDNVLQALRILNSAAGFNLGARHMTVSTVGLVPAIRKLSQEQLQVNLAISLHAPTNEA 259 Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310 R+ +P+NRKYPLE L+ AC+ Y + + +TFEYV+L G+ND+P A L ++L + Sbjct: 260 RSQTMPVNRKYPLEELLAACQDYIAATRRQ-VTFEYVLLAGVNDTPERAQQLAELLAPLK 318 Query: 311 --AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 A +N IP N Y I F + G S+ +R RG DI AACGQL++ Sbjct: 319 QFAHVNCIPVNATS-AGYRPPGPDAIRAFRNILFERGISNSVRAERGDDIAAACGQLRTR 377 Query: 369 SKRIPKV 375 + K Sbjct: 378 FEDRRKA 384 >gi|301632243|ref|XP_002945200.1| PREDICTED: ribosomal RNA large subunit methyltransferase N-like [Xenopus (Silurana) tropicalis] Length = 328 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 141/337 (41%), Positives = 189/337 (56%), Gaps = 21/337 (6%) Query: 53 MSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS 112 MSD+++ +R L I ++ E+ S DGT KWL +GG +ETV+IPE Sbjct: 1 MSDLAKSLREKLQDRACITGLPVLTEQASADGTVKWLF-----DVGGGNAVETVFIPEDD 55 Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172 RGTLCVSSQ GC++ C FC TG Q RNL+ EIL Q+ A L G Sbjct: 56 RGTLCVSSQAGCAVGCRFCSTGHQGFSRNLSTGEILAQLWYAEHHLRQRLG--------- 106 Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232 S R ISN+VMMGMGEPL N+ + +L + D G S+RR+T+STSG VP + R+ Sbjct: 107 -SSERVISNVVMMGMGEPLQNYAALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMERLA 165 Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 + V LA+SLHA ++ LR+ LV +NRKYPLE L+ C Y + ITFEY ML G+ Sbjct: 166 LDCPVALAVSLHAPNDALRDHLVSLNRKYPLEELLQTCVRYLDHAPRDFITFEYCMLDGV 225 Query: 293 NDSPRDALNLIKILKG-----IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYS 347 ND P A LI++++G + K NLIPFNP+P + S + + F+ + +G Sbjct: 226 NDQPEHAQQLIQLVRGHAQGKVWCKFNLIPFNPFPESGLVRSPPQRVSGFARLLSDAGIV 285 Query: 348 SPIRTPRGLDILAACGQLKSLSK-RIPKVPRQEMQIT 383 + +R RG DI AACGQL K R R + T Sbjct: 286 TTVRKTRGDDIDAACGQLAGEVKDRTRATERMARRRT 322 >gi|153005041|ref|YP_001379366.1| radical SAM protein [Anaeromyxobacter sp. Fw109-5] gi|205829648|sp|A7HCD6|RLMN_ANADF RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|152028614|gb|ABS26382.1| radical SAM enzyme, Cfr family [Anaeromyxobacter sp. Fw109-5] Length = 377 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 145/360 (40%), Positives = 210/360 (58%), Gaps = 19/360 (5%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L + + LE + +G R Q+ +W+ +G ++D+ + +R L + Sbjct: 16 LRSLPLDRLERLVAALG----ERPFRARQLHRWLQQKGAASLDELTDVPRALRAALAEAT 71 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 ++ E E+ S DGT KW R + +E+VY+PE R TLCVSSQVGC++ C Sbjct: 72 TLTTLERATEQRSVDGTIKWTWRTHDGKL-----VESVYMPEPDRRTLCVSSQVGCAVGC 126 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 +FC TGT L RNLT EI+ QV A I + R ++N+V MGMG Sbjct: 127 TFCLTGTMGLARNLTPGEIVEQVHRANR---------RIVELGEGQGPRPLTNLVFMGMG 177 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN 248 EPL N+ ++K +L + G +FS R +T+STSG VP I ++GEE V LAISL+A ++ Sbjct: 178 EPLANYRSLKVALDLLLSEDGPNFSHRHVTVSTSGLVPMIRKLGEETPVKLAISLNATTD 237 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 R+ L+PINR+YPL L++ACR +P + N RRITFEYV+L G+NDS DA+ L ++++G Sbjct: 238 AQRDALMPINRRYPLAQLLEACRSFP-IRNGRRITFEYVLLGGVNDSLEDAVRLARLVRG 296 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 IP K+NLIP+N PG Y + +V F E + ++ +R RG DI AACGQL + Sbjct: 297 IPTKVNLIPYNANPGLPYRAPAPERVVEFQETLAARNLTAVVRKNRGGDISAACGQLAAE 356 >gi|284047696|ref|YP_003398035.1| radical SAM enzyme, Cfr family [Acidaminococcus fermentans DSM 20731] gi|283951917|gb|ADB46720.1| radical SAM enzyme, Cfr family [Acidaminococcus fermentans DSM 20731] Length = 353 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 134/372 (36%), Positives = 200/372 (53%), Gaps = 28/372 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K+ ++G+ EEL+ L +G+ + R Q+++W+Y + DF MS++S++ R Sbjct: 1 MCKKEIMGLTLEELQTELAGLGM----KKFRAEQVFRWLYEKAATDFSQMSNLSKDARQQ 56 Query: 64 LNQHFSIIY--PEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 L ++I +++ E S DG T K LL +ETV + ++C+SS Sbjct: 57 LADRYTIATAQVKVLKEYRSRDGLTHKVLLELTD-----GATVETVLMHHDYGYSVCLSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC++ C+FC +G VRNLTA EIL Q+ +S + G ++S Sbjct: 112 QVGCAMNCAFCASGLHGFVRNLTAAEILAQLYFFQS--------------GLQPGGERVS 157 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239 IV+MG GEP+ N DNV K+L I G R +T+ST G VP I + + + L Sbjct: 158 RIVVMGSGEPMLNLDNVLKALDILHSDRGQCIGYRNMTVSTCGVVPGIQELTAQGRNINL 217 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 AISLH S +LRN L+PINRKYP +I A Y SN R++ +EY++L GIND P DA Sbjct: 218 AISLHGASQELRNRLMPINRKYPFPEVIQAADAY-EKSNGRQVMYEYILLAGINDRPEDA 276 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 NL L+ INLIP NP P + + + F + +K+ + +R G DI Sbjct: 277 RNLADALEHKECVINLIPANPVPEKGFERPSDRAVDRFFQMLKKRRLNVTVRKEMGKDIN 336 Query: 360 AACGQLKSLSKR 371 AACGQL++ + + Sbjct: 337 AACGQLRASALK 348 >gi|149176961|ref|ZP_01855570.1| hypothetical protein PM8797T_07067 [Planctomyces maris DSM 8797] gi|148844216|gb|EDL58570.1| hypothetical protein PM8797T_07067 [Planctomyces maris DSM 8797] Length = 368 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 123/366 (33%), Positives = 192/366 (52%), Gaps = 26/366 (7%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 + + R++L + ++ R QI +WI+ + + DF M DIS++ R LL ++F Sbjct: 22 ITDLTRDQLAQWCIEH----ESSSYRADQIRRWIFTKRVNDFDAMHDISKKFRDLLKENF 77 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 + IV + S D T K LL +E V + E R T+C+S+QVGC++ C Sbjct: 78 RLFSTRIVKHQTSKDRTEKLLLALHD-----GHHVECVLMREPKRNTVCISTQVGCAMGC 132 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC +G L RNLT EIL Q+L ++G+ +ISNIV+MG+G Sbjct: 133 VFCASGLLGLTRNLTMGEILEQILRLDRIIGE---------------EERISNIVVMGIG 177 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVS 247 EPL N + +L + G+ R+IT+ST G I + + +LA+SLHA + Sbjct: 178 EPLANLSALIPALDTLNHKGGMGIGARKITVSTVGLPVKIRELADVNKSYILAVSLHAPN 237 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 + LR+ +VP N K ++ ++DA +Y ++ RR+TFEY++L G+NDSP A L +LK Sbjct: 238 DTLRDQIVPTNNKIGIQKILDATDYYY-VTTGRRVTFEYILLAGVNDSPAHAHELACLLK 296 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 A +NLIP N Y +D+ F + + G + +R +G DI AACGQL+ Sbjct: 297 HRNAHVNLIPANGVEETGYKTPTTEDVDRFFMTLAKGGVNVTVRKRKGDDIDAACGQLRL 356 Query: 368 LSKRIP 373 ++ Sbjct: 357 NREKEK 362 >gi|170757229|ref|YP_001782049.1| radical SAM protein [Clostridium botulinum B1 str. Okra] gi|205829641|sp|B1IIL7|RLMN_CLOBK RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|169122441|gb|ACA46277.1| radical SAM enzyme, Cfr family [Clostridium botulinum B1 str. Okra] Length = 342 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 135/362 (37%), Positives = 205/362 (56%), Gaps = 29/362 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 E+++ EEL+E L+ + R Q++ WIY + I DF M +I + ++LL+ Sbjct: 2 ENILDFTLEELKEWLIS----KEEKAFRAKQVFDWIYNKLIFDFNNMKNIPYKTKNLLSD 57 Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +F I P++V + +S D T K+L + I IE+V + K ++CVS+QVGC Sbjct: 58 NFYIGVPKVVKKLMSQDKNTYKFLFEYKDGNI-----IESVVMKYKHGNSICVSTQVGCR 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC + ++RNLT+ EIL Q++ A+ +G+ +ISN+V+M Sbjct: 113 MGCKFCASTLDGVIRNLTSGEILSQIMAAQKEIGE-----------------RISNVVLM 155 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244 G GEPL NF+NV K L + + L+ +R ITLST G VP I + ++ + LAISLH Sbjct: 156 GSGEPLDNFENVTKFLDLVTSDTTLNIGQRHITLSTCGIVPKIKELADKNYNITLAISLH 215 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 + + LR ++PI KY ++ L++AC +Y +N RITFEY ++KG NDS ++A L Sbjct: 216 SPEDLLRKEMMPIANKYSIKELMEACDYYINKTNR-RITFEYALVKGKNDSIKEAKKLST 274 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKG +NLIP N Y S K+I +F +K +G + IR G DI AACGQ Sbjct: 275 VLKGKLCHVNLIPVNEIKENSYEKSTLKNIESFGNILKENGIETTIRREMGADINAACGQ 334 Query: 365 LK 366 L+ Sbjct: 335 LR 336 >gi|298490256|ref|YP_003720433.1| radical SAM enzyme, Cfr family ['Nostoc azollae' 0708] gi|298232174|gb|ADI63310.1| radical SAM enzyme, Cfr family ['Nostoc azollae' 0708] Length = 356 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 122/364 (33%), Positives = 188/364 (51%), Gaps = 31/364 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 L+G EL + + G P R Q+ WIY +G+R +S + R + Sbjct: 23 PLLGASVVELTAWVQEQGQPA----YRGKQLHDWIYDKGVRSLGDISVFPKSWREKVAD- 77 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 I + ++ D T K+LL+ I IETV IP R T+CVS+QVGC + Sbjct: 78 VPIGRSSLHYRAVAPDDTVKYLLKLADGEI-----IETVGIPSHKRLTVCVSTQVGCPMA 132 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC TG RNL+ EI+ QVL + +++SN+V MG+ Sbjct: 133 CDFCATGKGGYKRNLSRGEIVDQVLTVQE-----------------DFQQRVSNVVFMGL 175 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAV 246 GEPL N +NV +L ++ +G +R +T+ST G I ++ + + LA+SLHA Sbjct: 176 GEPLLNTENVILALKALNEDVG--IGQRSLTISTVGIRDRIHQLAQHHLQITLAVSLHAP 233 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 + LR L+P + YP+E L++ CR Y ++ R+TFEY++L G+ND P AL L K L Sbjct: 234 NQALREQLIPSAKPYPIEDLLNECREYVEITGR-RVTFEYILLAGVNDLPEQALELSKRL 292 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +G + +NLIP+NP +Y ++ I F +++ + +R RGL+ AACGQL+ Sbjct: 293 RGFQSHVNLIPYNPIEEVDYKRPNRDRIQAFVNVLQQQNITVSVRYSRGLEADAACGQLR 352 Query: 367 SLSK 370 + + Sbjct: 353 TSKR 356 >gi|297564808|ref|YP_003683780.1| radical SAM enzyme, Cfr family [Meiothermus silvanus DSM 9946] gi|296849257|gb|ADH62272.1| radical SAM enzyme, Cfr family [Meiothermus silvanus DSM 9946] Length = 344 Score = 396 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 128/335 (38%), Positives = 186/335 (55%), Gaps = 21/335 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI W+Y RG+R++ M+D+ + +R L + + + V +S DG K+L Sbjct: 25 YRKEQIAHWLYARGVREWSEMTDLPKGLRQELAEKYRVSEFAHVAPFVSQDGAVKYLYTL 84 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + E VY+P R T+C+SS VGC C+FC TG RNLTA EIL Q+L Sbjct: 85 -----WDGQKTEAVYMPYAGRKTICISSMVGCPAGCTFCATGKMGFGRNLTAAEILDQIL 139 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 A G P R+I N+V+MGMGEPL N ++V +++ D GL+ Sbjct: 140 FAAHHQGHSP--------------REIRNVVLMGMGEPLLNLNHVLEAIRRMLDPQGLAM 185 Query: 213 SKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S RRITLST G I R+ E++GV LA+SLHA + R ++P +Y + +++A R Sbjct: 186 SPRRITLSTVGIPRGIYRLAQEDLGVRLALSLHAPDDQTRQKIIPTAHRYSIAEIMEAVR 245 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 HY + R+T EY +LKG+ND P A L +L G+ A +NLIP+NPW G + + + Sbjct: 246 HYYAQTKR-RVTLEYTLLKGLNDHPWQARALAGLLAGLSAHVNLIPWNPWEGAPHQGTGK 304 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + I+ F+ ++R G +R RG D+ AACGQL Sbjct: 305 EKILAFAAALERMGIPVSVRWSRGRDVGAACGQLA 339 >gi|228472503|ref|ZP_04057263.1| radical SAM enzyme, Cfr family [Capnocytophaga gingivalis ATCC 33624] gi|228275916|gb|EEK14672.1| radical SAM enzyme, Cfr family [Capnocytophaga gingivalis ATCC 33624] Length = 345 Score = 396 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 133/367 (36%), Positives = 208/367 (56%), Gaps = 25/367 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + + + +EEL+ L G R +Q+++W++ +G F+ M+++S+E R LL++ Sbjct: 2 KDIRALKKEELQAFFLSHG----EKAFRANQVYEWLWTKGAHSFEQMTNLSKETRQLLSE 57 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 HF I + ++ + S DGT K +R + +E+V IP +R T CVSSQVGCSL Sbjct: 58 HFVINHIKVDTMQRSEDGTIKNAVRLHD-----GLYVESVLIPTDTRITACVSSQVGCSL 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 CSFC T K +RNL+ +EI QVL I+ GR + NIV MG Sbjct: 113 NCSFCATARLKRMRNLSPDEIFDQVL-------------TIDQQSRLYYGRPLRNIVFMG 159 Query: 187 MGEPLCNFDNVKKSLSIASDS-MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 MGEPL N+ NV K++ + GL FS +RIT+STSG I ++ ++ + LA+SLH Sbjct: 160 MGEPLMNYPNVMKAIERITSEKEGLGFSPKRITVSTSGVSKLIRKMADDKVKFRLAVSLH 219 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 + + RN ++P +PL L A +++ + RIT+EYV+ KGINDSP+D L+ Sbjct: 220 SAIEETRNKIMPWTVDFPLTELRTALQYWYQQT-KSRITYEYVVWKGINDSPKDVEALVA 278 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 + P K+NLI +NP + +D+K + + ++ +G ++ IR RG DI AACGQ Sbjct: 279 FCRFAPCKVNLIEYNPIDEGLFEQADEKALQLYKRKLEEAGITTTIRYSRGKDIDAACGQ 338 Query: 365 LKSLSKR 371 L + +++ Sbjct: 339 LANKNEK 345 >gi|217967818|ref|YP_002353324.1| radical SAM enzyme, Cfr family [Dictyoglomus turgidum DSM 6724] gi|254807171|sp|B8E0X3|RLMN_DICTD RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|217336917|gb|ACK42710.1| radical SAM enzyme, Cfr family [Dictyoglomus turgidum DSM 6724] Length = 348 Score = 396 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 140/368 (38%), Positives = 209/368 (56%), Gaps = 28/368 (7%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +++ E+ L G P R QI+ WIY + + + M+++S+ +R L ++ Sbjct: 3 NILSFEINEIRNILQGWGEPS----YRADQIFDWIYKKLVLNPLDMTNLSKTLRQKLLEY 58 Query: 68 FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 FS P++V +I+ DG T+K+LL IETV I K+R T+CVS QVGC + Sbjct: 59 FSFQIPKVV--RITGDGNTKKYLLELED-----GENIETVLISHKNRNTVCVSVQVGCPI 111 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG L RNL EI+ Q+++ + + KISN+V MG Sbjct: 112 GCKFCATGLIGLKRNLETHEIIGQLMVIQE--------------DLEKKEEKISNVVYMG 157 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 MGEPL N+DNV KS+ I + G + + ITLST G +P I ++ EE + + LAISLHA Sbjct: 158 MGEPLANYDNVIKSIRIIKEEWGFNIGSKHITLSTIGIIPKIYQLAEENLKIRLAISLHA 217 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +N+LR+ ++PIN++YP+E L+++ +Y + R+TFEYV++K ND DA L+++ Sbjct: 218 SNNELRSKIIPINKEYPIEELLESAFYYAEKTGR-RVTFEYVLIKNFNDRREDAKELVRL 276 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG PA +NLIP+N + SD KDI F E + SG + +R G I A CGQL Sbjct: 277 LKGKPAHVNLIPWNKVREYPWETSDLKDIFRFKEILANSGINVTLRISYGSKIKAGCGQL 336 Query: 366 KSLSKRIP 373 ++L + Sbjct: 337 RALYLKNK 344 >gi|300854446|ref|YP_003779430.1| hypothetical protein CLJU_c12600 [Clostridium ljungdahlii DSM 13528] gi|300434561|gb|ADK14328.1| conserved hypothetical protein [Clostridium ljungdahlii DSM 13528] Length = 345 Score = 396 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 122/370 (32%), Positives = 195/370 (52%), Gaps = 31/370 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +++ EEL+ + R QI WIY G DF M++I +++ L + Sbjct: 3 NILDFDMEELKSWMRDN----CESEFRAKQIMDWIYKNGQCDFDNMTNIPKKLLEKLKTN 58 Query: 68 FSIIYPEIVDEKISC--DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F I E+V + S D T K+L + + +ETV + K ++C+S+QVGC Sbjct: 59 FYIGTTELVKKCESKFRD-TFKFLYEYKDGNM-----VETVVMKYKHGNSICISTQVGCR 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC + +VRNLTA E+L Q+L +++ +G+ +ISNIV+M Sbjct: 113 MGCKFCASTIDGMVRNLTAGEMLGQILKSQNEIGE-----------------RISNIVLM 155 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244 G GEPL N++NV K L I + + +R ITLST G VP I + + ++ + LAISLH Sbjct: 156 GSGEPLDNYENVLKFLKIVNSEYSFNIGQRHITLSTCGIVPKIKDLADRDLQITLAISLH 215 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++ +R ++PI KY ++ +IDAC++Y + R++FEY ++ G+NDS + L + Sbjct: 216 APNDVMRKKIMPIANKYSIKDVIDACKYYIDKTGK-RVSFEYALVSGVNDSLKCCDELTE 274 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 ++ G+ +NLIP N S D+ F + ++ + IR G DI AACGQ Sbjct: 275 LISGLLCHVNLIPVNEVKENNLKKSSSDDVKKFYHRLIKNKIETTIRREMGSDIDAACGQ 334 Query: 365 LKSLSKRIPK 374 L+ + K Sbjct: 335 LRRSYLKSKK 344 >gi|167772290|ref|ZP_02444343.1| hypothetical protein ANACOL_03667 [Anaerotruncus colihominis DSM 17241] gi|167665393|gb|EDS09523.1| hypothetical protein ANACOL_03667 [Anaerotruncus colihominis DSM 17241] Length = 359 Score = 396 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 127/381 (33%), Positives = 200/381 (52%), Gaps = 35/381 (9%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +++ L +++E+ ++G+P R R QI+ W++ + + DF M+++ +R Sbjct: 1 MEQIDLKSYTYQQMEKLTAEMGLP----RFRAGQIFGWLHEKRVSDFDEMTNLPAALRSQ 56 Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L + F I + +S DGT K+L +E+V + TLC+SSQV Sbjct: 57 LAEKFYINAIRVKKRLVSSIDGTVKYLYELRD-----GNCVESVLMHYHHGNTLCISSQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC + VR+LTA E+L +V +A++ G+ ++ + Sbjct: 112 GCRMGCRFCASTIGGRVRDLTASEMLDEVYMAQADSGE-----------------RVDGV 154 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 VMMG+GEPL NFDNV L I SD GL+ R ++LST G V I + E + + L++ Sbjct: 155 VMMGIGEPLDNFDNVMAFLEILSDPRGLNLGLRHVSLSTCGLVDRIYALAERRLQLTLSV 214 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++ +R+ +P+N +Y ++ L+ ACR Y + RI+FEY ++ G ND+P A Sbjct: 215 SLHAPNDAIRSRSMPVNARYNVDTLLRACRDYFAATGR-RISFEYALIAGENDAPEHAAE 273 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L L+G+ A +NLIP NP Y D+ I F ++ G ++ IR G DI AA Sbjct: 274 LAARLRGMGAHVNLIPVNPVAETGYRRGDRAAIERFQNELRLRGVNATIRRELGADISAA 333 Query: 362 CGQLK------SLSKRIPKVP 376 CGQL+ S S R+P Sbjct: 334 CGQLRRQDADASTSGRVPVTE 354 >gi|23100552|ref|NP_694019.1| hypothetical protein OB3097 [Oceanobacillus iheyensis HTE831] gi|81745262|sp|Q8ELW7|RLMN_OCEIH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|22778785|dbj|BAC15053.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 355 Score = 396 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 121/376 (32%), Positives = 204/376 (54%), Gaps = 26/376 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K S+ G+ E+L++ L++ G R R Q+W W+Y + I F M++++Q L Sbjct: 1 MSKSSIYGLTYEKLKDWLIEHG----EKRFRAEQVWNWLYKKRINSFDEMNNVNQSAIQL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +F + + S DGT K+L + + IETV + ++CV++QVG Sbjct: 57 LKDNFVLHTMGEEIRQESQDGTIKFLFKLEDGNL-----IETVLMRFHYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G + R+L++ E++ Q++ + L + + ++S+IV Sbjct: 112 CNIGCTFCASGLLRKSRDLSSGEVVEQIMNVQKHLDERGEKD------------RVSHIV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEP N++N+ L +D GL+ R IT+STSG I ++ I V LAIS Sbjct: 160 VMGIGEPFDNYNNLMDFLYTVNDDRGLNIGARHITVSTSGLAHKIYEFADDPIQVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +++LR ++ INR +P++ L+ + +Y N RIT+EY+ML +ND ++A+ L Sbjct: 220 LHAPNDELRTKIMKINRAFPIDKLMKSVDYYLQKKNR-RITYEYIMLDDVNDHKKEAIEL 278 Query: 303 IKILKGIP--AKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++K A +NLIP+N +Y S ++I F E + G + +R G DI Sbjct: 279 ANLIKNHRHLAYVNLIPYNTVDEHIDYRRSKSENIQAFYETLTELGINCGVRWENGADID 338 Query: 360 AACGQLKSLSKRIPKV 375 AACGQL+S + K Sbjct: 339 AACGQLRSKQIKKSKA 354 >gi|56752343|ref|YP_173044.1| ribosomal RNA large subunit methyltransferase N [Synechococcus elongatus PCC 6301] gi|81561318|sp|Q5MZJ6|RLMN_SYNP6 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|56687302|dbj|BAD80524.1| hypothetical protein [Synechococcus elongatus PCC 6301] Length = 351 Score = 396 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 123/368 (33%), Positives = 190/368 (51%), Gaps = 37/368 (10%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L+G EL++ ++ G P R Q+++W+Y R I + +S + R L Q Sbjct: 5 TPLLGRSLPELQDWVVAQGQPS----YRAKQLYQWLYERSIHNLAEISVFPKAWRQSL-Q 59 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + +IVD +S G+ K+LLR I IE V IP R T+CVSSQ+GC++ Sbjct: 60 AVPVGRSQIVDRSVSPSGSIKYLLRLHDGEI-----IEAVGIPSGDRLTVCVSSQLGCAM 114 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG R+L EI+ QVL + +++SNIV MG Sbjct: 115 ACDFCATGKGGFRRHLAPHEIIDQVLTVQE-----------------DWQQRVSNIVFMG 157 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIGVML 239 MGEPL N D V ++ + + +R IT+ST G +I R+ E + L Sbjct: 158 MGEPLLNLDAVLAAIRCLNQD--IGIGQRGITVSTVGIPGHIRRLAETKRVGDRPLQFTL 215 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA + +R+ L+P +R YP+ L+ CR Y ++ R+TFEY++L G+ND P A Sbjct: 216 AVSLHAPNQAIRDRLIPSSRHYPITDLLQECRDYVQITGR-RVTFEYILLAGLNDQPEQA 274 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L ++L+G + +NLIP NP EY + + F++ +++ + +R +GL Sbjct: 275 EQLAQLLRGFQSHVNLIPCNPIDEVEYQRPSKARVDAFADALRQQRVAVTVRWSKGLGAD 334 Query: 360 AACGQLKS 367 AACGQL++ Sbjct: 335 AACGQLRA 342 >gi|255323622|ref|ZP_05364752.1| radical SAM enzyme, Cfr family [Campylobacter showae RM3277] gi|255299336|gb|EET78623.1| radical SAM enzyme, Cfr family [Campylobacter showae RM3277] Length = 363 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 139/380 (36%), Positives = 210/380 (55%), Gaps = 42/380 (11%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++L+ +EL++ L R QI++W+Y + F M ++ +++R L Q Sbjct: 2 KNLLDFTLDELKDQL--------SPPFRAKQIFEWLYKKNATSFDEMLNLPKDLRANLVQ 53 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------------R 113 F + + V + S DG+ K+L + IE+V +P K R Sbjct: 54 EFYLDPLKCVKFERSADGSIKYLFELKD-----GLRIESVLLPMKEELNDENGEVTRHAR 108 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 T+CVSSQVGC + CSFC TG L RNLT EI+ Q+L + Sbjct: 109 YTICVSSQVGCRMGCSFCLTGKSGLTRNLTPGEIVGQILCIKREN--------------K 154 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233 + N+V MGMGEPL N +NV K++ I ++ GL+ + RR T+STSG I ++GE Sbjct: 155 IPYERRVNVVYMGMGEPLDNLENVSKAIKILKENDGLAITPRRQTVSTSGLGSQIKKLGE 214 Query: 234 -EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 ++GV+LAISLHAV+N+LR+ L+PIN Y +E +++A R +P + +R+ FEY+++K + Sbjct: 215 MDLGVLLAISLHAVTNELRSKLMPINNAYKIESVMEAVRGFP-IDMRKRVMFEYLVIKDM 273 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 ND +DA L+ +L GI AK+NLI FNP G EY + D+ F ++ G + IR Sbjct: 274 NDGIKDAKKLVSLLHGIKAKVNLIYFNPHEGSEYGRPNTADMEAFQTYLRDHGVTCTIRQ 333 Query: 353 PRGLDILAACGQLKSLSKRI 372 +GLDI AACGQLK ++ Sbjct: 334 SKGLDISAACGQLKERDNQM 353 >gi|257059331|ref|YP_003137219.1| ribosomal RNA large subunit methyltransferase N [Cyanothece sp. PCC 8802] gi|256589497|gb|ACV00384.1| radical SAM enzyme, Cfr family [Cyanothece sp. PCC 8802] Length = 340 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 131/363 (36%), Positives = 195/363 (53%), Gaps = 31/363 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+G +EL + + K G P R Q+ +W+Y +G R +S + R L ++ Sbjct: 8 LLGKSLDELTQWVEKQGQPT----YRGKQLHQWLYEKGARSLDEISVFPKIWREKLI-NY 62 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 I I ++ D TRK+LL C+G + IETV IP R T+CVSSQVGC + C Sbjct: 63 PIGRSTIDYRTVAPDATRKYLL-----CLGDGLIIETVGIPTAKRLTVCVSSQVGCPMAC 117 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG R+L A EI+ QVL + R++S++V MGMG Sbjct: 118 DFCATGKGGYQRHLRAHEIVDQVLTVQE-----------------DFQRRVSHVVFMGMG 160 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVS 247 EPL N + V KS+ I + + +R +T+ST G I ++ + V LA+SLHA + Sbjct: 161 EPLLNLEEVVKSVKILNQD--IGIGQRSLTISTVGLPQKIIQLAHHHLQVTLAVSLHASN 218 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 LR L+P + YPL+ L+ CR Y ++ RI+FEYV+L G+ND P A+ L +LK Sbjct: 219 QPLRETLIPSAQHYPLKNLLADCREYVNITGR-RISFEYVLLGGVNDLPEQAIELANLLK 277 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 G + +NLIP+NP +Y +Q I TF + +++ + +R RGL+ AACGQL++ Sbjct: 278 GFQSHVNLIPYNPIDEADYQRPNQTQIQTFVQVLEQHKIAVSVRYSRGLEANAACGQLRA 337 Query: 368 LSK 370 + Sbjct: 338 SQR 340 >gi|262199015|ref|YP_003270224.1| radical SAM enzyme, Cfr family [Haliangium ochraceum DSM 14365] gi|262082362|gb|ACY18331.1| radical SAM enzyme, Cfr family [Haliangium ochraceum DSM 14365] Length = 378 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 147/367 (40%), Positives = 214/367 (58%), Gaps = 23/367 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + L + E L++G P R R QIW+W++ G+ + M+++ + +R LL Sbjct: 17 RIDLRTLDLAETVALALELGQP----RYRGEQIWRWVHGAGVTRLEDMANLPRTLRELLA 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + ++ + + S DGTRK LR IETV IP+ + T C+SSQVGC+ Sbjct: 73 ERTTLGTLRVDAAQTSRDGTRKLRLRTRD-----GRAIETVLIPDGDKLTQCISSQVGCA 127 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T L R+L EI+ QV R+LL + R+I+N+V M Sbjct: 128 LDCDFCATAKLGLTRHLDPGEIVDQVYRGRALLAEV------------EPERRITNLVYM 175 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLH 244 GMGEPL N+ NV KSL + + +G + S+RRIT+ST G VP I ++G E++ LAISL+ Sbjct: 176 GMGEPLHNYANVVKSLRLLTSELGANLSQRRITVSTVGQVPGIEKLGREDVRPNLAISLN 235 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A S+++R+ ++P+NRK+ + L+ A R YP L RR+TFEYV+L G+NDS DA L + Sbjct: 236 ASSDEIRDRIMPVNRKWNIARLLQAVRDYP-LERRRRVTFEYVLLAGVNDSMADAARLSR 294 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L+GIP K+N+IP+NP PG Y + F KR G + +RTPRG DI AACGQ Sbjct: 295 LLRGIPCKLNIIPWNPHPGAPYQRPSAHAVEAFQNEAKRLGLPTYLRTPRGDDIDAACGQ 354 Query: 365 LKSLSKR 371 L + ++ Sbjct: 355 LAARVEQ 361 >gi|148380460|ref|YP_001255001.1| radical SAM enzyme, Cfr family [Clostridium botulinum A str. ATCC 3502] gi|153932990|ref|YP_001384683.1| radical SAM protein [Clostridium botulinum A str. ATCC 19397] gi|153937048|ref|YP_001388204.1| radical SAM protein [Clostridium botulinum A str. Hall] gi|226949859|ref|YP_002804950.1| radical SAM enzyme, Cfr family [Clostridium botulinum A2 str. Kyoto] gi|205829625|sp|A7FW72|RLMN_CLOB1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829626|sp|A5I4T4|RLMN_CLOBH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|148289944|emb|CAL84057.1| radical SAM superfamily protein [Clostridium botulinum A str. ATCC 3502] gi|152929034|gb|ABS34534.1| radical SAM enzyme, Cfr family [Clostridium botulinum A str. ATCC 19397] gi|152932962|gb|ABS38461.1| radical SAM enzyme, Cfr family [Clostridium botulinum A str. Hall] gi|226842641|gb|ACO85307.1| radical SAM enzyme, Cfr family [Clostridium botulinum A2 str. Kyoto] Length = 342 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 134/362 (37%), Positives = 205/362 (56%), Gaps = 29/362 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 E+++ EEL+E L+ + R Q++ WIY + I DF M +I + ++LL+ Sbjct: 2 ENILDFTLEELKEWLIS----KEEKAFRAKQVFDWIYNKLIFDFNNMKNIPYKTKNLLSD 57 Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +F + P++V + +S D T K+L + I IE+V + K ++CVS+QVGC Sbjct: 58 NFYVGVPKVVKKLMSQDKNTYKFLFEYKDGNI-----IESVVMKYKHGNSICVSTQVGCR 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC + ++RNLT+ EIL Q++ A+ +G+ +ISN+V+M Sbjct: 113 MGCKFCASTLDGVIRNLTSGEILSQIMAAQKEIGE-----------------RISNVVLM 155 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244 G GEPL NF+NV K L + + L+ +R ITLST G VP I + ++ + LAISLH Sbjct: 156 GSGEPLDNFENVTKFLDLVTSDTTLNIGQRHITLSTCGIVPKIKELADKNYNITLAISLH 215 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 + + LR ++PI KY ++ L++AC +Y +N RITFEY ++KG NDS ++A L Sbjct: 216 SPEDLLRKEMMPIANKYSIKELMEACDYYINKTNR-RITFEYALVKGKNDSIKEAKKLST 274 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKG +NLIP N Y S K+I +F +K +G + IR G DI AACGQ Sbjct: 275 VLKGKLCHVNLIPVNEIKENSYEKSTLKNIESFGNILKENGIETTIRREMGADINAACGQ 334 Query: 365 LK 366 L+ Sbjct: 335 LR 336 >gi|114566753|ref|YP_753907.1| hypothetical protein Swol_1227 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318220|sp|Q0AXL8|RLMN_SYNWW RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|114337688|gb|ABI68536.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 357 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 145/376 (38%), Positives = 218/376 (57%), Gaps = 24/376 (6%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN ++K+ L+G+ ++EE LL + R R Q++KWIY + F MSD+ + + Sbjct: 1 MNSIEKKQLLGLDLNQMEEFLLGL----EEPRFRGRQVYKWIYQKECSSFYEMSDLPRSL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE----KSRGTL 116 R L++ + P ++ +++ DG+RK+L+ + +IE V +P+ KS TL Sbjct: 57 RKKLDEKARVSIPRVLKQRVGKDGSRKFLMELDDKK-----KIECVLLPQSRDKKSSYTL 111 Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176 C+S+QVGC + CSFC TG RNL A EI+ Q L +++ + Sbjct: 112 CLSTQVGCPIACSFCATGQSGFQRNLKAFEIIGQYL---------GSKKELSKRLKSPRA 162 Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-I 235 ISN+V MGMGEPL N+D V KS+ + +D G++ +RRIT+STSG V I ++ +E I Sbjct: 163 ELISNVVYMGMGEPLLNYDEVIKSVHMLNDPRGINLGQRRITISTSGEVAGIKKLAQENI 222 Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 + LAISLHA N LR+ L+P+NRKYPLE+L A Y + R+TFEY++L +N S Sbjct: 223 QLTLAISLHACDNSLRDQLIPLNRKYPLEVLFPAIEDYIAFTGR-RVTFEYLLLDEVNMS 281 Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 DA ++K+LK + A +NLIP+N G + + I F + ++ G + IR RG Sbjct: 282 RNDANKMVKLLKPLLANLNLIPYNEIEGLPFKKPETAKIWQFYQWLQDGGLNVSIREERG 341 Query: 356 LDILAACGQLKSLSKR 371 DI AACGQL+S +R Sbjct: 342 SDINAACGQLRSDYRR 357 >gi|326790877|ref|YP_004308698.1| radical SAM protein [Clostridium lentocellum DSM 5427] gi|326541641|gb|ADZ83500.1| radical SAM enzyme, Cfr family [Clostridium lentocellum DSM 5427] Length = 345 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 116/367 (31%), Positives = 187/367 (50%), Gaps = 29/367 (7%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 ++ ELEE +L G + R Q+++W + + + D+ M+++ ++R L +++ Sbjct: 4 ILNHTIAELEEIILAYG----ESKFRAKQLFEWFHKKMVWDYDEMNNLPLKLRDKLKENY 59 Query: 69 SIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 I IV++ S DGT K+L I IE+V + K ++C+SSQVGC + Sbjct: 60 PIQSLRIVEKLCSEIDGTIKYLFELSDSHI-----IESVLMRYKHGNSVCISSQVGCRMG 114 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC + + VRNL E++ Q+ ++SNIV+MG Sbjct: 115 CKFCASTVEGRVRNLLPAEMVGQIYAISK-----------------DTNERVSNIVIMGS 157 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 GEPL + + + + G + +R IT+ST G VP I + EE + + LA+SLHA Sbjct: 158 GEPLEELGVTLRFVELINHPSGQNIGQRHITVSTCGLVPEIKALAEEKLQINLALSLHAT 217 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 +++ R ++PI RKY LE ++ AC ++ +N R+TFEY +++G ND DA L +L Sbjct: 218 TDERRQAIMPIARKYSLEEVLAACHYFIEKTNR-RVTFEYALIEGENDKEEDARRLGGLL 276 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 KG+ +NLIP N Y S I F +++ G + +R G DI AACGQL+ Sbjct: 277 KGMLCHVNLIPVNQIDERSYKSSKASSIERFKGVLEQYGVPTTLRRTLGADIDAACGQLR 336 Query: 367 SLSKRIP 373 + Sbjct: 337 RRYLKKR 343 >gi|170759295|ref|YP_001787821.1| radical SAM protein [Clostridium botulinum A3 str. Loch Maree] gi|205829629|sp|B1KX56|RLMN_CLOBM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|169406284|gb|ACA54695.1| radical SAM enzyme, Cfr family [Clostridium botulinum A3 str. Loch Maree] Length = 342 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 134/362 (37%), Positives = 204/362 (56%), Gaps = 29/362 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 E+++ EEL+E L+ + R Q++ WIY + I DF M +I + ++LL+ Sbjct: 2 ENILDFTLEELKEWLIS----KEEKAFRAKQVFDWIYNKLIFDFNNMKNIPYKTKNLLSD 57 Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +F I P++V + +S D T K+L + I IE+V + K ++CVS+QVGC Sbjct: 58 NFYIGVPKVVKKLMSQDKNTYKFLFEYNDGNI-----IESVVMKYKHGNSICVSTQVGCR 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC + ++RNLT+ EIL Q++ A+ +G+ +ISN+V+M Sbjct: 113 MGCKFCASTLDGVIRNLTSGEILSQIMAAQKEIGE-----------------RISNVVLM 155 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244 G GEPL NF NV + L + + L+ +R ITLST G VP I + ++ + LAISLH Sbjct: 156 GSGEPLDNFKNVTEFLDLVTSDTTLNIGQRHITLSTCGIVPKIKELADKNYNITLAISLH 215 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 + + LR ++PI KY ++ L++AC +Y +N RITFEY ++KG NDS ++A L Sbjct: 216 SPEDLLRKEMMPIANKYSIKELMEACDYYINKTNR-RITFEYALVKGKNDSIKEAKKLST 274 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKG +NLIP N Y S K+I +F +K +G + IR G DI AACGQ Sbjct: 275 VLKGKLCHVNLIPVNEIKENSYEKSTLKNIESFGNILKENGIETTIRREMGADINAACGQ 334 Query: 365 LK 366 L+ Sbjct: 335 LR 336 >gi|218246284|ref|YP_002371655.1| ribosomal RNA large subunit methyltransferase N [Cyanothece sp. PCC 8801] gi|254807168|sp|B7K4N4|RLMN_CYAP8 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|218166762|gb|ACK65499.1| radical SAM enzyme, Cfr family [Cyanothece sp. PCC 8801] Length = 340 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 130/363 (35%), Positives = 194/363 (53%), Gaps = 31/363 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+G +EL + + K G P R Q+ +W+Y +G R +S + R L ++ Sbjct: 8 LLGKSLDELTQWVEKQGQPT----YRGKQLHQWLYEKGARSLDEISVFPKTWREKLI-NY 62 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 I I ++ D TRK+LL C+G + IETV IP R T+CVSSQVGC + C Sbjct: 63 PIGRSTIDYRTVAPDATRKYLL-----CLGDGLIIETVGIPTAKRLTVCVSSQVGCPMAC 117 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG R+L A EI+ QVL + R++S++V MGMG Sbjct: 118 DFCATGKGGYQRHLRAHEIVDQVLTVQE-----------------DFQRRVSHVVFMGMG 160 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVS 247 EPL N + V KS+ I + + +R +T+ST G I ++ + V LA+SLHA + Sbjct: 161 EPLLNLEEVVKSVKILNQD--IGIGQRSLTISTVGLPQKIIQLAHHHLQVTLAVSLHASN 218 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 LR L+P + Y L+ L+ CR Y ++ RI+FEYV+L G+ND P A+ L +LK Sbjct: 219 QPLRETLIPSAQHYTLKNLLADCREYVNITGR-RISFEYVLLGGVNDLPEQAIELANLLK 277 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 G + +NLIP+NP +Y +Q I TF + +++ + +R RGL+ AACGQL++ Sbjct: 278 GFQSHVNLIPYNPIDEADYQRPNQTQIQTFVQVLEQHKIAVSVRYSRGLEANAACGQLRA 337 Query: 368 LSK 370 + Sbjct: 338 SQR 340 >gi|297617050|ref|YP_003702209.1| radical SAM enzyme, Cfr family [Syntrophothermus lipocalidus DSM 12680] gi|297144887|gb|ADI01644.1| radical SAM enzyme, Cfr family [Syntrophothermus lipocalidus DSM 12680] Length = 371 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 135/368 (36%), Positives = 207/368 (56%), Gaps = 21/368 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ LIGM + +LE + +G R+ Q+++W+Y + +F+ M+D+ +++R + Sbjct: 2 KKELIGMTKTDLESMVKSLGGEA----FRSRQLYRWLYKNLVFEFENMTDLPRDLRDRVK 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE----KSRGTLCVSSQ 121 Q SI P + E+IS DGT K LL +E V IP+ + R TLC+SSQ Sbjct: 58 QVASITLPVVERERISRDGTVKVLLGLQD-----GQHVEMVMIPQTRAGRHRYTLCISSQ 112 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC + C FC TG VRNL EI QVLL + +++N Sbjct: 113 VGCPIGCPFCATGRSGFVRNLAVNEITGQVLLG------LLRLRNSNTFETQGSATRLTN 166 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240 +V MGMGEP N+ V K + + +D GL+ +R IT+ST+G V I R+ +E + V LA Sbjct: 167 VVFMGMGEPFLNYSAVMKCIRLMNDPDGLNIGQRHITVSTAGEVRGIRRLAQEGLQVTLA 226 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLH+ +++R+ LVP+NRKYPL L +A R Y G++ R+T EYV+L+G+N S +D Sbjct: 227 VSLHSARDEVRDWLVPLNRKYPLSELEEALRFYCGVTKR-RVTLEYVLLEGVNTSRQDVA 285 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 +LI + + +NLIP+N E+ ++ F + +K +G +S +R RG DI Sbjct: 286 SLIDFARPLLCNVNLIPYNQIEKAEFRRPSPSTVLRFQQWLKEAGVNSVVREERGGDIEG 345 Query: 361 ACGQLKSL 368 ACGQL++ Sbjct: 346 ACGQLRAR 353 >gi|332291134|ref|YP_004429743.1| radical SAM enzyme, Cfr family [Krokinobacter diaphorus 4H-3-7-5] gi|332169220|gb|AEE18475.1| radical SAM enzyme, Cfr family [Krokinobacter diaphorus 4H-3-7-5] Length = 346 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 123/366 (33%), Positives = 204/366 (55%), Gaps = 24/366 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K + + +EEL + + G R +Q+++W++ +G DF M+++S++ R LL Sbjct: 4 DKRDIRKLSKEELRDFFVSQG----DKPFRGNQVYEWLWQKGAHDFIDMTNLSKDTRILL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +++F I + + + S DGT K + + +E+V IP K+R T CVSSQVGC Sbjct: 60 DENFVINHIRVDQMQRSSDGTIKNGVELHDGLM-----VESVLIPTKNRTTACVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 SL C FC T K +RNL +EI+ QV++ + + +SNIV Sbjct: 115 SLNCKFCATARLKRMRNLNPDEIVDQVVVIDRQSRLY-------------HDKPLSNIVF 161 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MGMGEPL N++NV K++ +D GL S +RIT+STSG I ++ ++ + LA+SL Sbjct: 162 MGMGEPLMNYNNVIKAIDKITDPEGLGMSPKRITVSTSGVPKIIKKMADDDVKFNLAVSL 221 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ +++R ++P N + PL L +A ++ + RIT+EYV+ GIND D + L+ Sbjct: 222 HSALDNVRTEIMPFNEQMPLADLKEALIYWYEKTGK-RITYEYVVWDGINDRHIDIMALL 280 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K +P+K+N+I +NP ++ ++ + I + ++ +G + +R RG DI AACG Sbjct: 281 DFCKAVPSKVNIIEYNPIDDGQFQQANPEAIDRYVSVLEANGVTVTVRRSRGKDIDAACG 340 Query: 364 QLKSLS 369 QL + Sbjct: 341 QLANKQ 346 >gi|304316971|ref|YP_003852116.1| radical SAM protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778473|gb|ADL69032.1| radical SAM enzyme, Cfr family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 343 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 133/364 (36%), Positives = 202/364 (55%), Gaps = 31/364 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L M +ELE+ + IG + R Q+++WIY RG+ +F+ M+D+ E+R LN Sbjct: 2 VDLKNMTIDELEKFFVDIG----ETKYRAKQVFQWIY-RGVTNFEEMTDLKIELRKKLNS 56 Query: 67 HFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I +I + +S D T K+L I +E V I T C+S+QVGC+ Sbjct: 57 IAYISSLKIAQKLVSDADETAKYLFLLDDENI-----VEGVAIKYSYGNTSCISTQVGCN 111 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + CSFC +G VRNL A E++ +VL+ + G KISNIV+M Sbjct: 112 MKCSFCASGIGGKVRNLKASEMVDEVLIMDNDYG------------------KISNIVLM 153 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G GEP N++ V K + I ++ G+ R IT+ST G VP I E +GV L+ISLH Sbjct: 154 GSGEPFDNYEEVMKFIKIVNNPFGMGVGIRHITISTCGIVPKIYDFANEGLGVNLSISLH 213 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++DLR L+PIN+ YP++ LI AC++Y ++ R+TFEY ++K +ND+ ++ L K Sbjct: 214 APTDDLRTQLMPINKVYPIKDLIKACKYYIDKTHR-RVTFEYSLIKDVNDNYEMSVKLSK 272 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L+G+ +NLIP N Y +D + I+ F ++++G + +R G DI AACGQ Sbjct: 273 LLRGLLCHVNLIPINYVDEIGYKKADNEKIIAFKNTLEKNGITCTVRRELGSDINAACGQ 332 Query: 365 LKSL 368 L+ Sbjct: 333 LRRK 336 >gi|218282588|ref|ZP_03488826.1| hypothetical protein EUBIFOR_01408 [Eubacterium biforme DSM 3989] gi|218216459|gb|EEC89997.1| hypothetical protein EUBIFOR_01408 [Eubacterium biforme DSM 3989] Length = 336 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 120/354 (33%), Positives = 194/354 (54%), Gaps = 21/354 (5%) Query: 21 LLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKI 80 + + + R QI++W+Y + D M+++S+E R +L + F + E++ +++ Sbjct: 1 MCEYALDHGWKSYRGHQIFQWLYRNRVFDIDEMTNVSKETREILKKDFIVNPLELIKKQV 60 Query: 81 SCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVR 140 S DGT K+L + + +E+V + ++CVSSQVGC++ C+FC +G K R Sbjct: 61 SHDGTTKFLFKTSDGAL-----LESVMMVFDYGRSVCVSSQVGCNMGCAFCASGLTKKKR 115 Query: 141 NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKS 200 +LT+ E++ QV+ + + ++S+IV+MG GEP N+DNV Sbjct: 116 DLTSGEMVAQVMYVQKE--------------LDKDNLRLSHIVVMGTGEPFDNYDNVMNF 161 Query: 201 LSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINR 259 L+ + GL R IT+ST G VP I E LAISLHA +++LR+ L+P+N Sbjct: 162 LATVNHDRGLGIGSRHITISTCGIVPRIYDFANEHTQYNLAISLHAPNDELRDQLMPVNH 221 Query: 260 KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFN 319 YPL+ L++A ++Y G N RR+TFEY++LKG+ND P A L K+L G+ A +NLIP+N Sbjct: 222 AYPLKELMEAIQYY-GKENNRRLTFEYILLKGVNDHPEHAKQLSKLLHGMNAYVNLIPYN 280 Query: 320 PWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIP 373 + + + F + + ++ IR G DI AACGQL+ + Sbjct: 281 AVDEKGFKSVTHDEAMVFYDLLMKNYVRCTIRKEHGNDIDAACGQLRIKEIKKE 334 >gi|198275963|ref|ZP_03208494.1| hypothetical protein BACPLE_02146 [Bacteroides plebeius DSM 17135] gi|198271592|gb|EDY95862.1| hypothetical protein BACPLE_02146 [Bacteroides plebeius DSM 17135] Length = 351 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 124/373 (33%), Positives = 193/373 (51%), Gaps = 29/373 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K L+G EL+ + +G+P + QI W+Y + + + M+++S + R L Sbjct: 4 KTPLLGKTLNELKTIVQDLGMP----KFTAGQIASWLYDKKVGSIEEMTNLSLKNRERLM 59 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +++ + V E S DGT K+L C IE+VYIP+ R TLCVSSQVGC Sbjct: 60 ENYEVGASAPVHEVRSVDGTVKYLF-----CTPEGDYIESVYIPDDDRATLCVSSQVGCK 114 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q +LTA +IL Q+ ++N+V M Sbjct: 115 MNCKFCMTGKQGYTTSLTAAQILNQIYSVPERD-------------------TLTNVVFM 155 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEP N D V ++L I + G +S +RIT+ST G + R EE LAISLH+ Sbjct: 156 GMGEPFDNLDEVLRALEILTADYGYKWSPKRITVSTVGLRKGLERFLEESDCHLAISLHS 215 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 R L+P + + + +++ R Y S RR++FEY++ KG+NDS A L+K+ Sbjct: 216 PFPSQRRELMPAEKAFSITEMVEILRRY-DFSKQRRLSFEYIVFKGVNDSLIYAKELVKL 274 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G+ ++NLI F+ P + +D + ++ F + + + G + IR RG DI AACG L Sbjct: 275 LRGLDCRMNLIRFHAIPNVDLEGTDMESMIAFRDYLTQHGLFATIRASRGEDIFAACGML 334 Query: 366 KSLSKRIPKVPRQ 378 + ++ K ++ Sbjct: 335 STAQQQAEKKEKE 347 >gi|302542187|ref|ZP_07294529.1| cfr family radical SAM enzyme [Streptomyces hygroscopicus ATCC 53653] gi|302459805|gb|EFL22898.1| cfr family radical SAM enzyme [Streptomyces himastatinicus ATCC 53653] Length = 372 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 125/369 (33%), Positives = 183/369 (49%), Gaps = 25/369 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + E EA+ +G R +Q+ + + R D +D+ R L Sbjct: 24 RHLADLTPAERREAVAALG----EKPFRAAQVSRHYFARYTDDPAQWTDVPAAAREKLAA 79 Query: 67 HFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +V ISCD TRK L R + +E+V + R T+C+SSQ GC Sbjct: 80 GLLPDLMSVV-RHISCDDDTTRKTLWRLFDGTL-----VESVLMRYPDRVTMCISSQAGC 133 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EI+ Q++ G + IP ++SNIV Sbjct: 134 GMNCPFCATGQAGLDRNLSTAEIVHQIV---------DGMRALRDGEIPGGPARLSNIVF 184 Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 MGMGEPL N++ V ++ +D GL S+R IT+ST G VP + R +E LA+ Sbjct: 185 MGMGEPLANYNRVIGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAV 244 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++LR+ LVP+N ++ + ++DA Y S RI+ EY ++K IND A Sbjct: 245 SLHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKSGR-RISIEYALIKDINDQAWRADL 303 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++LKG +NLIP NP PG ++ S +D F ++R G +R RG +I A Sbjct: 304 LGRLLKGHRVHVNLIPLNPTPGSKWTASRPEDEKAFVAALERHGVPVTVRDTRGQEIDGA 363 Query: 362 CGQLKSLSK 370 CGQL + + Sbjct: 364 CGQLAATER 372 >gi|269127610|ref|YP_003300980.1| radical SAM enzyme, Cfr family [Thermomonospora curvata DSM 43183] gi|268312568|gb|ACY98942.1| radical SAM enzyme, Cfr family [Thermomonospora curvata DSM 43183] Length = 388 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 125/368 (33%), Positives = 185/368 (50%), Gaps = 25/368 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + E A+ ++G R Q+ + + R + D M+D+ VR L Sbjct: 40 RHLADLTPAERRAAVAELG----EKPFRAQQLSRHYFTRLVDDPAQMTDLPAAVREHLAA 95 Query: 67 HFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 V + CDG TRK L R + IE+V + R T+CVSSQ GC Sbjct: 96 ELLPTLLTEV-RALDCDGGATRKTLWRAFDGTL-----IESVLMRYPDRITMCVSSQAGC 149 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EI+ QV+ G + I +ISNIV Sbjct: 150 GMNCPFCATGQAGLTRNLSTGEIVEQVVA---------GARALARGKIAGGPGRISNIVF 200 Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 MGMGEPL N+ V ++ +D GL S+R +T+ST G VP IAR+ +E + V LA+ Sbjct: 201 MGMGEPLANYKAVLGAIRRITDPAPDGLGISQRSVTVSTVGLVPAIARLADEGLSVRLAV 260 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++LR+ LVP+N ++ + ++DA Y + R++ EY +++ +ND A Sbjct: 261 SLHAPDDELRDELVPVNTRWKVREVLDAAWAYADRTGR-RVSIEYALIRDVNDQAWRADL 319 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++LKG +NLIP NP PG ++ S +D F ++ G +R RG +I A Sbjct: 320 LGRLLKGHLVHVNLIPLNPTPGSKWTASRPRDEREFVARLQAHGVPVTVRDTRGREIDGA 379 Query: 362 CGQLKSLS 369 CGQL + + Sbjct: 380 CGQLAAAT 387 >gi|325955527|ref|YP_004239187.1| ribosomal RNA large subunit methyltransferase N [Weeksella virosa DSM 16922] gi|323438145|gb|ADX68609.1| Ribosomal RNA large subunit methyltransferase N [Weeksella virosa DSM 16922] Length = 348 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 124/372 (33%), Positives = 206/372 (55%), Gaps = 25/372 (6%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN KK + + +++LE IG R Q+++W++ + DF M+++S+ + Sbjct: 1 MNPTKK-DIRKLSQQDLEVYFQSIG----EKAFRGKQVYEWLWKKNAHDFNDMTNLSKNL 55 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L+ F I E+ + S DGT K ++ + +E+V IP ++R T C+SS Sbjct: 56 RENLDAAFRIQPVEVDFLQKSNDGTIKNAVKLHDGNV-----VESVLIPTETRTTACISS 110 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGCSL C+FC T K +RNLTA EI+ QV++ ++ R +S Sbjct: 111 QVGCSLDCTFCATAQLKRMRNLTAAEIVDQVVIIDRESREY-------------FDRPLS 157 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239 NIV MGMGEPL N+ V +++ + GL S RRITLSTSG I ++ +E + + L Sbjct: 158 NIVFMGMGEPLLNYTEVVEAIKKITLPEGLGMSPRRITLSTSGIPKMIEKLADEDLKIGL 217 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH+ ++RN ++P + K+PL L+ + +++ + +ITFEY++ K IND D Sbjct: 218 AVSLHSAREEIRNKIMPFSVKFPLTDLLKSLQYWYD-TTKSKITFEYIVWKDINDKKEDI 276 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L++ K +P+K+N+I +N Y + + + + + ++++G +R RG DI Sbjct: 277 DALVRFCKRVPSKVNIIEYNTIDDGPYQQASPQVLNAYIDALEKNGIIVNVRRSRGKDID 336 Query: 360 AACGQLKSLSKR 371 AACGQL + + + Sbjct: 337 AACGQLANKTTK 348 >gi|300866402|ref|ZP_07111100.1| Ribosomal RNA large subunit methyltransferase N [Oscillatoria sp. PCC 6506] gi|300335612|emb|CBN56260.1| Ribosomal RNA large subunit methyltransferase N [Oscillatoria sp. PCC 6506] Length = 349 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 125/361 (34%), Positives = 182/361 (50%), Gaps = 31/361 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 L+G EL + + G P R Q+ +WIY +G+R +S S++ R L + Sbjct: 16 PLLGANLAELTAWVQEQGQPA----YRAKQLHQWIYEKGVRSLSEISVFSKQWRESLA-N 70 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 I I ++ D T K+LL+ I +E V IP + R T+CVSSQVGC + Sbjct: 71 VPIGRSIIHHRSVAPDQTVKYLLKLADGQI-----VEAVGIPTEKRLTVCVSSQVGCPMA 125 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC TG R+L EI+ QVL + R++S+IV MGM Sbjct: 126 CDFCATGKGGFQRHLAKHEIVDQVLTVQE-----------------DFKRRVSHIVFMGM 168 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 GEPL N +NV ++ ++ +G +R IT+ST G I + E + V LA+SLH Sbjct: 169 GEPLLNLENVVAAVKCLNEDVG--IGQRNITISTVGIRDRIRLLAEHHLQVTLAVSLHGS 226 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 + LR L+P R Y + L++ CR Y ++ R++ EY++L G+ND P A L L Sbjct: 227 NQKLREKLIPSARNYRFDELMEECREYVKITGR-RLSVEYILLAGVNDLPEHAAELADNL 285 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +G +NLIP+NP +Y Q I F E +K + +R RGLD AACGQL+ Sbjct: 286 RGFQCHVNLIPYNPIAEADYERPSQYRIKVFVEALKARHIAVSVRYSRGLDADAACGQLR 345 Query: 367 S 367 + Sbjct: 346 A 346 >gi|332879827|ref|ZP_08447516.1| 23S rRNA m2A2503 methyltransferase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682204|gb|EGJ55112.1| 23S rRNA m2A2503 methyltransferase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 349 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 133/372 (35%), Positives = 209/372 (56%), Gaps = 25/372 (6%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN K + +EEL + G R +Q+++W++ +G+ F+ M+++ + Sbjct: 1 MNQ-SKRDIRAFTKEELRRIFEENG----DQAFRGNQVYEWLWQKGVHSFEAMTNLPKAT 55 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R +L++HF I + ++ + S DGT K +R + +E+V IP +R T CVSS Sbjct: 56 REMLDKHFVINHIKVDVMQRSDDGTIKNAVRLHDGLL-----VESVLIPTDTRTTACVSS 110 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGCSL CSFC T K +RNL +EI QV + I+ GR +S Sbjct: 111 QVGCSLNCSFCATARLKRMRNLLPDEIFDQVRV-------------IDEQSKAFFGRPLS 157 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVML 239 NIV MGMGEPL N++NV K++ + + GL S +RITLSTSG I ++ + E+ L Sbjct: 158 NIVFMGMGEPLMNYNNVLKAIDKITSTEGLGMSAKRITLSTSGVPKLIKKMADDEVKFKL 217 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH+ + +R ++P N ++PL L +A +++ + RIT+EYV+ KGIND +D Sbjct: 218 AVSLHSAIDSVRTSIMPFNEQFPLSELREALQYWYQKT-KNRITYEYVVWKGINDQRKDV 276 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 LIK K P+K+NLI +NP E+ +D + + + ++ +G + +R RG DI Sbjct: 277 EALIKFCKFAPSKVNLIEYNPIDDGEFQQADSRALTLYQTMLEEAGITVTVRHSRGKDID 336 Query: 360 AACGQLKSLSKR 371 AACGQL + + + Sbjct: 337 AACGQLANKTTK 348 >gi|256390734|ref|YP_003112298.1| ribosomal RNA large subunit methyltransferase N [Catenulispora acidiphila DSM 44928] gi|256356960|gb|ACU70457.1| radical SAM enzyme, Cfr family [Catenulispora acidiphila DSM 44928] Length = 395 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 120/368 (32%), Positives = 185/368 (50%), Gaps = 23/368 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + E ++AL ++G H R +Q+ + + D SD+ R L Sbjct: 47 RHLADLTSAERKKALSELG----HQGFRAAQVSQHYFGHLADDPAQWSDVPAAKREELAG 102 Query: 67 HFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + E+ + +GT RK L R +E+V + + R T+CVSSQ GC Sbjct: 103 ILTPRLLTPIREQTADNGTTRKTLWRLFD-----GATVESVLMRYRDRTTMCVSSQAGCG 157 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG L RN++ EI+ QV+ G + +P ++SN+V M Sbjct: 158 MNCPFCATGQAGLTRNMSTGEIVEQVVA---------GARTMARGEVPGGPGRVSNVVFM 208 Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAIS 242 GMGEPL N+ V ++ ++ GL S R IT+ST G VP I ++ E I V LA+S Sbjct: 209 GMGEPLANYKAVIGAVRRLTEPVPDGLGLSARHITVSTVGLVPAIEKLTAEAIPVTLAVS 268 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA ++LR+ LVP+N ++ + ++DA Y ++ R++ EY ++K IND A L Sbjct: 269 LHAPDDELRDTLVPVNTRWNVSEVLDAAWRYASVTKR-RVSIEYALIKDINDQAWRADRL 327 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++L+ +NLIP NP PG ++ S +D F ++ G +R RG DI AC Sbjct: 328 GRMLRNKLVHVNLIPLNPTPGSKWTASRPQDEAEFVRRLQEWGVPVTVRDTRGRDIDGAC 387 Query: 363 GQLKSLSK 370 GQL + K Sbjct: 388 GQLAAAVK 395 >gi|168180611|ref|ZP_02615275.1| radical SAM enzyme, Cfr family [Clostridium botulinum NCTC 2916] gi|182668374|gb|EDT80353.1| radical SAM enzyme, Cfr family [Clostridium botulinum NCTC 2916] Length = 342 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 134/362 (37%), Positives = 205/362 (56%), Gaps = 29/362 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 E+++ EEL+E L+ + R Q++ WIY + I DF M +I + ++LL+ Sbjct: 2 ENILDFTLEELKEWLIS----KEEKAFRAKQVFDWIYNKLIFDFNNMKNIPYKTKNLLSD 57 Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +F + P++V + +S D T K+L + I IE+V + K ++CVS+QVGC Sbjct: 58 NFYVGVPKVVKKLMSQDKNTYKFLFEYKDGNI-----IESVVMKYKHGNSICVSTQVGCR 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC + ++RNLT+ EIL Q++ A+ +G+ +ISN+V+M Sbjct: 113 MGCKFCASTLDGVIRNLTSGEILSQIMAAQKEIGE-----------------RISNVVLM 155 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244 G GEPL NF+NV K L + + L+ +R ITLST G VP I + ++ + LAISLH Sbjct: 156 GSGEPLDNFENVTKFLDLVTSDTTLNIGQRHITLSTCGIVPKIKELADKNYNITLAISLH 215 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 + + LR ++PI KY ++ L++AC +Y +N RITFEY ++KG NDS ++A L Sbjct: 216 SPEDLLRKEMMPIANKYSIKELMEACDYYINKTNR-RITFEYALVKGKNDSIKEAKKLSI 274 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKG +NLIP N Y S K+I +F +K +G + IR G DI AACGQ Sbjct: 275 VLKGKLCHVNLIPVNEIKENSYEKSTLKNIESFGNILKENGIETTIRREMGADINAACGQ 334 Query: 365 LK 366 L+ Sbjct: 335 LR 336 >gi|302341935|ref|YP_003806464.1| radical SAM enzyme, Cfr family [Desulfarculus baarsii DSM 2075] gi|301638548|gb|ADK83870.1| radical SAM enzyme, Cfr family [Desulfarculus baarsii DSM 2075] Length = 359 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 129/363 (35%), Positives = 181/363 (49%), Gaps = 25/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K L + E+L L +G R Q+ +W++ G+ D M+ +S+ +R L Sbjct: 3 QKPDLRDLTAEQLARLLADLG----EKPFRARQVSQWLHGHGVDDIADMTSLSKALRAKL 58 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + + S DGTRK L IE+V +PE TLCVS+QVGC Sbjct: 59 SAVGRLTAMGPAKVLQSADGTRKLLFLLED-----GQAIESVLMPEDGHHTLCVSTQVGC 113 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 C FC T + L RNL EIL QVL AR L +F R ++N+V Sbjct: 114 RQGCRFCATASLGLRRNLRPAEILGQVLAARRLCDEF---------------RPLTNLVF 158 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N DNV +L GL S+RR+T+ST G V + + LAISL+ Sbjct: 159 MGMGEPLDNLDNVIVALGHILGEHGLQMSQRRVTVSTVGLVDRLPLLAAASPCALAISLN 218 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A + +R ++P+ +++ LE L A YP L RR+T EYV+L G+ND P A L + Sbjct: 219 APNEHIRRQIMPVTKRFGLEALRRAIVDYP-LKPTRRVTLEYVLLGGVNDRPEHARELAR 277 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 KG+P K+NLI FNP + + + F + ++ +R RG DI AACGQ Sbjct: 278 WAKGLPVKVNLIAFNPHQAGPFQAPEAAAVEEFQNVLIEGHVTALLRRSRGQDIAAACGQ 337 Query: 365 LKS 367 L + Sbjct: 338 LVA 340 >gi|317489233|ref|ZP_07947750.1| cfr family radical SAM enzyme [Eggerthella sp. 1_3_56FAA] gi|325832221|ref|ZP_08165220.1| 23S rRNA m2A2503 methyltransferase [Eggerthella sp. HGA1] gi|316911634|gb|EFV33226.1| cfr family radical SAM enzyme [Eggerthella sp. 1_3_56FAA] gi|325486057|gb|EGC88511.1| 23S rRNA m2A2503 methyltransferase [Eggerthella sp. HGA1] Length = 353 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 128/373 (34%), Positives = 196/373 (52%), Gaps = 31/373 (8%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M + K S+ EL + ++G P RT Q+ +W+Y R + M+++ + Sbjct: 6 MAAMDK-SIKTYSLPELASVMKELGQPA----FRTQQLQEWLYQRHASSYDEMTNLPGSL 60 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK--SRGTLCV 118 R L + F + P +VD +IS DGTRK+L+ F + +ETV IP + R T+C Sbjct: 61 RATLAERFPLTMPTVVDRQISKDGTRKYLVEF-----DDGIRVETVGIPSRNGDRLTVCF 115 Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 S+Q GC + C+FC TG + RNLT EI+ QVL+ + +G++ Sbjct: 116 STQAGCPIACAFCATGQEGFARNLTPGEIVDQVLIVQE-----------------DMGKR 158 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GV 237 ++N V MG GEP N+DN +L I + GL R I++ST G +P + R EE Sbjct: 159 VTNAVGMGQGEPFLNYDNTMAALRILNHKKGLEIGARHISVSTCGILPGLERFSEEPEQF 218 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 LA+SLHA +R++++P +Y L L +A ++Y +N R+T EY+M++G+ND+P Sbjct: 219 TLAVSLHAARQPIRDLIMPNVARYELPSLKEALQNYVAKTNR-RVTLEYIMIEGVNDAPA 277 Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 D L K + +NLIP N G E+ S + I + I + G + +R RG D Sbjct: 278 DLKALQKFCSNLLCHVNLIPINAIEGSEFQPSSPETINLWLSEISKKGTEATLRDSRGSD 337 Query: 358 ILAACGQLKSLSK 370 I ACGQLK+ K Sbjct: 338 ISGACGQLKNTFK 350 >gi|164687799|ref|ZP_02211827.1| hypothetical protein CLOBAR_01443 [Clostridium bartlettii DSM 16795] gi|164603074|gb|EDQ96539.1| hypothetical protein CLOBAR_01443 [Clostridium bartlettii DSM 16795] Length = 343 Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 123/368 (33%), Positives = 198/368 (53%), Gaps = 30/368 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L EEL+E + +IG R +QI+ WIY +G + F M +I + +R L Sbjct: 4 QKIALKNFTEEELKEFMKEIG----EKPFRGTQIYSWIY-KGAKTFDDMKNIPKSLREKL 58 Query: 65 NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + I E S D T+K+L I IE+V + R T C+S+QVG Sbjct: 59 EKVSYIGNLETELVLKSKVDKTKKYLFALNDGNI-----IESVMMDYDDRVTACISNQVG 113 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC + + L+RNL EIL Q++ + G+++SN+V Sbjct: 114 CRMGCKFCASTMEGLIRNLEPWEILDQIIKIQE-----------------DTGKRVSNLV 156 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242 +MG GEPL NF+N K+ L I +D GL+ R ITLST G +P + + + I + LA+S Sbjct: 157 LMGSGEPLDNFENTKQFLKIVNDKNGLNIGYRHITLSTCGVIPKMYELADLNIPINLALS 216 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LH+ ++ R ++P+ + Y ++ LI AC++Y +N R+TFEY ++KG+NDS ++ + Sbjct: 217 LHSPFDEKRAEIMPVAKAYKVKDLIKACQNYIDKTNR-RVTFEYSLIKGVNDSKAESDEI 275 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LKG+ +NLIP N ++ D+ I F + ++++ + +R G DI AC Sbjct: 276 SRLLKGMLCHVNLIPINKVEERDFERPDKTYIYKFRDALEKNKIPTTVRNSMGSDIGGAC 335 Query: 363 GQLKSLSK 370 GQL+ K Sbjct: 336 GQLRRKHK 343 >gi|153939514|ref|YP_001391802.1| radical SAM protein [Clostridium botulinum F str. Langeland] gi|205829628|sp|A7GG92|RLMN_CLOBL RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|152935410|gb|ABS40908.1| radical SAM enzyme, Cfr family [Clostridium botulinum F str. Langeland] gi|295319828|gb|ADG00206.1| radical SAM enzyme, Cfr family [Clostridium botulinum F str. 230613] Length = 342 Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 134/362 (37%), Positives = 204/362 (56%), Gaps = 29/362 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 E+++ EEL+E L+ + R Q++ WIY + I DF M +I + ++LL+ Sbjct: 2 ENILDFTLEELKEWLIS----KEEKAFRAKQVFDWIYNKLIFDFNNMKNIPYKTKNLLSD 57 Query: 67 HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +F + P++V + +S D T K+L + I IE+V + K ++CVS+QVGC Sbjct: 58 NFYVGVPKVVKKLMSQDKNTYKFLFEYKDGNI-----IESVVMKYKHGNSICVSTQVGCR 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC + ++RNLT+ EIL Q++ A+ +G+ +ISN+V+M Sbjct: 113 MGCKFCASTLDGVIRNLTSGEILSQIMAAQKEIGE-----------------RISNVVLM 155 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244 G GEPL NF NV K L + + L+ +R ITLST G VP I + ++ + LAISLH Sbjct: 156 GSGEPLDNFQNVTKFLDLVTSDTTLNIGQRHITLSTCGIVPKIKELADKNYNITLAISLH 215 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 + + LR ++PI KY ++ L++AC +Y +N RITFEY ++KG NDS ++A L Sbjct: 216 SPEDLLRKEMMPIANKYSIKELMEACDYYINKTNR-RITFEYALVKGKNDSIKEAKKLST 274 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKG +NLIP N Y S K+I +F +K +G + IR G DI AACGQ Sbjct: 275 VLKGKLCHVNLIPVNEIKENSYEKSTLKNIESFGNILKENGIETTIRREMGADINAACGQ 334 Query: 365 LK 366 L+ Sbjct: 335 LR 336 >gi|307330070|ref|ZP_07609221.1| radical SAM enzyme, Cfr family [Streptomyces violaceusniger Tu 4113] gi|306884331|gb|EFN15366.1| radical SAM enzyme, Cfr family [Streptomyces violaceusniger Tu 4113] Length = 368 Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 126/369 (34%), Positives = 183/369 (49%), Gaps = 25/369 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + E EA+ +G R SQ+ + + R + D SDI R L Sbjct: 20 RHLADLTPAERREAVAALG----EKPFRASQVSRHYFARYVDDPAQWSDIPAAAREKLAA 75 Query: 67 HFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +V ISCD TRK L R + +E+V + R T+C+SSQ GC Sbjct: 76 GLLPELMSVV-RHISCDDDTTRKTLWRLFDGTL-----VESVLMRYPDRVTMCISSQAGC 129 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EI+ Q++ G + IP ++SNIV Sbjct: 130 GMNCPFCATGQAGLDRNLSTAEIVHQIV---------DGMRALRDGEIPGGPARLSNIVF 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 MGMGEPL N++ V ++ +D GL S+R IT+ST G VP + R +E LA+ Sbjct: 181 MGMGEPLANYNRVVGAIRRLTDPEPDGLGVSQRGITVSTVGLVPAMLRFADEGFKCRLAV 240 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++LR+ LVP+N ++ + ++DA Y S R++ EY ++K IND A Sbjct: 241 SLHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKSGR-RVSIEYALIKDINDQAWRADL 299 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++LKG +NLIP NP PG ++ S +D F ++ G +R RG +I A Sbjct: 300 LGRLLKGRRVHVNLIPLNPTPGSKWTASRPEDEKAFVAALEAHGVPVTVRDTRGQEIDGA 359 Query: 362 CGQLKSLSK 370 CGQL + + Sbjct: 360 CGQLAASER 368 >gi|269926508|ref|YP_003323131.1| radical SAM enzyme, Cfr family [Thermobaculum terrenum ATCC BAA-798] gi|269790168|gb|ACZ42309.1| radical SAM enzyme, Cfr family [Thermobaculum terrenum ATCC BAA-798] Length = 371 Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 131/363 (36%), Positives = 199/363 (54%), Gaps = 27/363 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +SL+ + +EL E + P+ R Q+W+ IY + D + M+ + + +R +L+ Sbjct: 19 KSLLDLSLQELREWIRLRDYPE----YRAVQVWQAIYRQLEVDPEKMTSLPKALREVLSA 74 Query: 67 HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQVGC 124 F V ++ G T K L + IE+V + R T+CVSSQ GC Sbjct: 75 EFPFPNITPVRTFVADGGDTEKVLFQLED-----GNAIESVLMEYMDGRATVCVSSQAGC 129 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 ++ C+FC TG RNL+A EI+ Q+L L D G++++NIV Sbjct: 130 AIGCTFCATGLGGFYRNLSAGEIVYQILYFSKKLRD--------------KGKRLTNIVY 175 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISL 243 MGMGEPL N D V +S+ + G++FS RRIT+ST+G V I R ++ V LAISL Sbjct: 176 MGMGEPLANLDAVWRSVENLHEPTGMNFSARRITISTAGLVHQIDRFPPTDLQVNLAISL 235 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA ++DLR ++PINR++P+ LI + + Y ++ RITFEYV++ G N S A +L Sbjct: 236 HAPNDDLRTSIMPINRRWPISELIASAKRYVERTHR-RITFEYVLIAGCNSSKEHARDLS 294 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +L+G+ +NLIP N PG + +++ TF + + +G +R RG DILAACG Sbjct: 295 NLLRGLLCHVNLIPLNRVPGSPFEPPSTEEVNTFRDILLSAGIPCTVRLERGADILAACG 354 Query: 364 QLK 366 QL+ Sbjct: 355 QLR 357 >gi|21672555|ref|NP_660622.1| hypothetical protein BUsg275 [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25091617|sp|Q8K9P5|RLMN_BUCAP RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|21623181|gb|AAM67833.1| hypothetical 43.1 kDa protein [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 363 Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 156/363 (42%), Positives = 216/363 (59%), Gaps = 24/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K +L+ + R+E+E LL +G + T Q+ KWIY R +F MS++ +++R L Sbjct: 13 DKINLLDLNRKEIEIFLLSLG----AKKFVTDQLMKWIYNRHCNNFNLMSNLKKDIRKKL 68 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 N+ I ++EKIS DGT KW+ +IET+YIPEK R TLCVSSQ+GC Sbjct: 69 NERSYIFASNFIEEKISYDGTVKWI------TSIDKQKIETIYIPEKKRATLCVSSQIGC 122 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 SL C FC TG Q RNL EI+ Q+ A +L + I+NIV Sbjct: 123 SLKCKFCATGQQGFNRNLKVSEIISQIWQANKILKE------------KKNNSTITNIVF 170 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D G SKRRITLSTSG VP + ++ ++I V LAISLH Sbjct: 171 MGMGEPLLNLNNVISAIKIILDKNGFGLSKRRITLSTSGIVPALNKLIKKIDVSLAISLH 230 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNL 302 A ++ +RN ++PIN KY ++ +++ Y S+A R +T EYVML+GIND A L Sbjct: 231 APNDFIRNSIMPINMKYNIKSFLNSVSKYLKHSHANRGGVTVEYVMLRGINDLNEHAEEL 290 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ILK IP+KINLIP+N + ++CS + I F+ +++ G+++ IR RG DI AAC Sbjct: 291 GNILKKIPSKINLIPWNFFKNANFICSSKNRINIFANILRKKGFNTTIRKNRGQDIGAAC 350 Query: 363 GQL 365 GQL Sbjct: 351 GQL 353 >gi|121533699|ref|ZP_01665526.1| radical SAM enzyme, Cfr family [Thermosinus carboxydivorans Nor1] gi|121307690|gb|EAX48605.1| radical SAM enzyme, Cfr family [Thermosinus carboxydivorans Nor1] Length = 350 Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 129/365 (35%), Positives = 207/365 (56%), Gaps = 26/365 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K ++ G +E+ + + + G+ + R QI +WIY RG+ F M+++ + R LL Sbjct: 2 KTNIFGYFAQEISDLIAQYGLE----KYRGRQIAEWIYRRGVSRFADMTNLPLKKRDLLA 57 Query: 66 QHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 ++F+I ++ + S DG T K+LL+F +ETV + +LCVS+QVGC Sbjct: 58 ENFTIDTVYVMAAQHSADGKTSKFLLKFTD-----GAAVETVLMRHSYGNSLCVSTQVGC 112 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC + Q + RNL+ EIL Q + +L + S ++++IV+ Sbjct: 113 GMGCIFCASTLQGVARNLSGGEILAQAIYVNNL--------------LLSAQTRLNSIVI 158 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG GEPL N+DNV + + + + L+ S R ITLST G VP + ++ E + + LA+SL Sbjct: 159 MGSGEPLANYDNVLRFIRLCHEPYCLNLSYRSITLSTCGLVPEMRKLAAEGLPITLAVSL 218 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +N+LR+ ++PINR+YP+E +++A +Y + RR+T+EY ++KG+ND A L Sbjct: 219 HAPNNELRSQIMPINRRYPIEEVVEAADYYAA-TTGRRVTYEYTLIKGVNDGLEQAYELA 277 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++L G A +NLI N P LC D+K I F + + R ++ +R G DI AACG Sbjct: 278 RLLAGRLANVNLIAVNAVPERGLLCPDEKQIAAFEQTLLRQNINTTVRRKMGADIQAACG 337 Query: 364 QLKSL 368 QL+ Sbjct: 338 QLRKK 342 >gi|302671345|ref|YP_003831305.1| radical SAM domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302395818|gb|ADL34723.1| radical SAM domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 352 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 116/375 (30%), Positives = 201/375 (53%), Gaps = 33/375 (8%) Query: 1 MNFLK----KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDI 56 M++++ K + + +EL + + G P R Q+++W++V+ RD+ M++I Sbjct: 1 MSYIQGINGKIDIKSLTLDELTILIKEAGEPA----FRAKQLYEWMHVKLARDYDEMTNI 56 Query: 57 SQEVRHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGT 115 + ++ + F + + + S D T+K+L + IE+V++ K + Sbjct: 57 PKSLKEKCREMFDFVSLKSELVQESKLDDTKKFLFALSDGNM-----IESVFMKYKFGVS 111 Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175 +C+SSQVGC + C FC + +VRNL E+L Q+ + G+ Sbjct: 112 VCISSQVGCRMGCKFCASTIDGVVRNLLPSEMLDQIYAISRITGE--------------- 156 Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE- 234 K+ +V+MG GEPL N+DN+ + + + ++ GL+ S+R +T+ST G VPNI R+ ++ Sbjct: 157 --KVGRVVVMGSGEPLDNYDNLLRFIDLLTNEDGLNMSQRNLTVSTCGIVPNILRLADKN 214 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 + + LA+SLHA +ND R L+PI KY + ++DACR Y + + +TFEY ++ G+ND Sbjct: 215 LAINLALSLHASNNDKRKELMPIANKYEIHEVLDACRTYFDKTGRQ-LTFEYSLVAGVND 273 Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 + DA L +L G +NLIP NP ++ +D+ + F +++S + IR Sbjct: 274 TDEDARELTDLLSGFNCVVNLIPVNPIKERDFKPTDRAGALGFKNKLEKSRINVTIRREM 333 Query: 355 GLDILAACGQLKSLS 369 G DI ACGQL+ Sbjct: 334 GRDIDGACGQLRRRH 348 >gi|27904760|ref|NP_777886.1| hypothetical protein bbp265 [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|46397192|sp|Q89AK8|RLMN_BUCBP RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|27904157|gb|AAO26991.1| conserved hypothetical protein [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 373 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 154/368 (41%), Positives = 211/368 (57%), Gaps = 23/368 (6%) Query: 1 MNFLK-KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59 M +K K +L+ + +++ IG + R Q+ KWIY DF M++IS + Sbjct: 10 MQKIKLKTNLLNFDLQSMKKFFCSIG----ELEFRAQQVMKWIYQHYCDDFNKMTNISLQ 65 Query: 60 VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119 +R L+ I P+ ++ K+S DGT KW + G IETV IP+ R TLC+S Sbjct: 66 LRKKLSTLCCITPPKFLNHKVSVDGTMKW------SVVIGNQCIETVCIPKNQRTTLCIS 119 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 SQ+GCSL CSFC TG Q +NL EI+ QV + L+ ++ KI Sbjct: 120 SQLGCSLACSFCLTGQQGFNKNLNVSEIIGQVWYIQKLI----------YFSKINITNKI 169 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 +N+V+MGMGEPL N NV +L I D GL+ SK ITLST+G VP + ++ I V L Sbjct: 170 TNVVLMGMGEPLLNLSNVVHALRIMLDEFGLNMSKNHITLSTAGIVPALKKLHTMIDVSL 229 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPR 297 A+SLHA +N +RN L+PIN+KY +E ++ A + Y SN +R+T EYVML GIND+ Sbjct: 230 AVSLHASNNTIRNQLMPINKKYNIESVLCAIKKYLYYSNANKKRVTIEYVMLSGINDAAY 289 Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 A L +LK IP KINLIP+N + G Y+CS+ I F+ + + G IR RG D Sbjct: 290 HAEELFNLLKSIPHKINLIPWNHFSGSNYICSNDITINNFANILIKKGCIVTIRKIRGYD 349 Query: 358 ILAACGQL 365 I AACGQL Sbjct: 350 INAACGQL 357 >gi|222099877|ref|YP_002534445.1| Radical SAM enzyme, Cfr family [Thermotoga neapolitana DSM 4359] gi|254807220|sp|B9K7Z6|RLMN_THENN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|221572267|gb|ACM23079.1| Radical SAM enzyme, Cfr family [Thermotoga neapolitana DSM 4359] Length = 343 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 131/366 (35%), Positives = 205/366 (56%), Gaps = 30/366 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++L+ + +EL + +G+ R R QI W++ + + +F M+++S++ R LL + Sbjct: 2 KNLLDLSYDELVSEITSLGLE----RYRADQILDWVFDKKVNNFDEMTNLSKQHRALLKE 57 Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 HF+I + +++++++S DGT K+L IE+V I R T C+S+QVGC Sbjct: 58 HFTIPFLKLLEKRVSKIDGTTKFLWELED-----GNTIESVMIFHPGRITACISTQVGCP 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC TG VRNLT EI+ Q+L G+KI N+V M Sbjct: 113 VGCTFCATGMSGFVRNLTTGEIVSQILSMEK-----------------EEGKKIGNVVYM 155 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 GMGEPL N++N KS+ I + + RRIT+ST G I ++ +E + V LA+SLH Sbjct: 156 GMGEPLLNYENTIKSIRILNHKKMGNIGIRRITISTVGIPEKIIQLADEGLDVKLALSLH 215 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N R+ LVP+NRKY +E +++A + Y + R+T EYV+++G+ND DA L + Sbjct: 216 APTNFKRDQLVPLNRKYSVEEILNAIKVYQMKTGK-RVTIEYVLIRGVNDEISDAKKLAE 274 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 ILKG+ +NLIP NP ++ I+ F + +G + IR +G DI AACGQ Sbjct: 275 ILKGLKVFVNLIPVNPTV-AGLSKPSRQRILAFKRILLENGIEAEIRQEKGSDIEAACGQ 333 Query: 365 LKSLSK 370 L+ K Sbjct: 334 LRLKRK 339 >gi|242310237|ref|ZP_04809392.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] gi|239523534|gb|EEQ63400.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] Length = 346 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 140/368 (38%), Positives = 203/368 (55%), Gaps = 28/368 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K+++ G+ EEL ++L G P + R QI+ W+YVR +F M ++ + +R Sbjct: 1 MDKKNIFGLTLEELTQSL--NGFP----KFRAKQIYHWLYVRYENNFDKMENLPKNLREF 54 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-SRGTLCVSSQV 122 L Q F+ I ++ S DG+ K+L R E V++ K + TLC+SSQ+ Sbjct: 55 LKQDFTGDLVSIAKKEQSSDGSVKYLFRTADNLT-----YEAVFLKMKEDKFTLCLSSQI 109 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + CSFC T VRNL+A E++ QV + K NI Sbjct: 110 GCKVGCSFCLTAKGGFVRNLSAGEMVYQVFAIKKDQNI--------------PSNKAVNI 155 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241 V MGMGEPL N +NV K + I S+ GLS S+RR T+STSG P I ++G +GV LAI Sbjct: 156 VYMGMGEPLDNLENVSKCIQILSELDGLSISRRRQTISTSGIAPKIKKLGALNLGVQLAI 215 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHAV ++LR L+PIN+ Y ++ +ID +P + +R+ FEY+M+ +NDS A Sbjct: 216 SLHAVDDELRTKLMPINKAYNIQSVIDEVAIFP-IDTRKRVMFEYLMIDEVNDSLECAKK 274 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L+ +L I AK+NLI FNP G Y +++ + F E + + G IR +GLDI AA Sbjct: 275 LVALLNKIKAKVNLIYFNPHEGSPYKRPNKEKVEAFREFLLKKGLLCTIRESKGLDISAA 334 Query: 362 CGQLKSLS 369 CGQL+ Sbjct: 335 CGQLREKE 342 >gi|156743521|ref|YP_001433650.1| ribosomal RNA large subunit methyltransferase N [Roseiflexus castenholzii DSM 13941] gi|205829869|sp|A7NPY6|RLMN_ROSCS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|156234849|gb|ABU59632.1| radical SAM enzyme, Cfr family [Roseiflexus castenholzii DSM 13941] Length = 399 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 131/392 (33%), Positives = 196/392 (50%), Gaps = 42/392 (10%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L + E+E L G P R Q+++ +YV M+D+ +R L Sbjct: 13 PNLYDLSLAEMERLLTDWGQPT----YRARQVFRQLYVNLADTPLAMTDLPLALRERLAN 68 Query: 67 HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + + +G TRK L R P + +E+V + R T+CVS+Q GC+ Sbjct: 69 ETRLAPVTPEQVQTADNGLTRKALFRLPNGAL-----VESVLMIYLDRATVCVSTQAGCA 123 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG--------- 176 + C FC TGT L+RNL+ EI+ QV+ A + G M P Sbjct: 124 MGCVFCATGTLGLLRNLSPGEIVAQVVWAAREMRRLAGRPPRPTMRQPEDDAWWSPDDLE 183 Query: 177 ------------RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF 224 ++NIV MGMGEP +D +++ I D GL+ R +T+ST G Sbjct: 184 NDAPSVPEVSSVSHVTNIVFMGMGEPFATYDRWWRAVEIIHDPRGLNIGARSMTVSTVGL 243 Query: 225 VPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283 VP I R+ E + + LA+SLHA +DLR+ L+PINR+YPL +L+DA R Y + R++ Sbjct: 244 VPGIRRLATETLPINLAVSLHAPDDDLRSALMPINRRYPLAVLLDATRDYLAATGR-RVS 302 Query: 284 FEYVMLKGINDSPRDALNLIKILKG---------IPAKINLIPFNPWPGCEYLCSDQKDI 334 FEYV+L+G ND P A L +L+G +NLIP+NP PG S+++ + Sbjct: 303 FEYVLLQGKNDEPEHAAKLAALLRGEAGPAGLPLHLVHVNLIPWNPVPGMPLGRSERRRV 362 Query: 335 VTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +TF ++ G + +R RG+ I AACGQL Sbjct: 363 LTFQRILRERGIACTVRVERGVAIAAACGQLA 394 >gi|255693933|ref|ZP_05417608.1| radical SAM enzyme, Cfr family [Bacteroides finegoldii DSM 17565] gi|260620244|gb|EEX43115.1| radical SAM enzyme, Cfr family [Bacteroides finegoldii DSM 17565] Length = 344 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 132/367 (35%), Positives = 196/367 (53%), Gaps = 29/367 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K L+GM EL+ ++G+P QI W+Y + + M+++S + R L Sbjct: 1 MSKYPLLGMTLVELQALAKRLGMPS----FAAKQIASWLYEKKVTSIDEMTNLSLKHREL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L Q++ + VDE S DGT K+L R +G +E+VYIP+ R TLCVSSQVG Sbjct: 57 LKQNYEVGVFPPVDEMRSVDGTVKYLYR-----VGDNHFVESVYIPDDDRATLCVSSQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG Q NLTA +I+ Q+ K++N+V Sbjct: 112 CKMNCKFCMTGKQGFTANLTANQIINQI-------------------HSLPERDKLTNVV 152 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N D V K+L + + G ++S +RITLST G + R EE LAISL Sbjct: 153 MMGMGEPLDNLDEVLKALEVLTAPYGYAWSPKRITLSTVGLRKGLRRFIEESDCHLAISL 212 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ R+ L+P + + + +++ ++Y S RR++FEY++ KG+NDS A L+ Sbjct: 213 HSPVAAQRSELMPAEKAFSITEMVELLKNY-DFSKQRRLSFEYIVFKGLNDSQIYAKELL 271 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+L+G+ +INLI F+ PG +D + F + + G + IR RG DI AACG Sbjct: 272 KLLRGLDCRINLIRFHAIPGVNLEGADMDTMTRFRDYLTSHGLFTTIRASRGEDIFAACG 331 Query: 364 QLKSLSK 370 L + + Sbjct: 332 MLSTAKQ 338 >gi|282900428|ref|ZP_06308378.1| conserved hypothetical protein [Cylindrospermopsis raciborskii CS-505] gi|281194741|gb|EFA69688.1| conserved hypothetical protein [Cylindrospermopsis raciborskii CS-505] Length = 360 Score = 393 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 125/366 (34%), Positives = 186/366 (50%), Gaps = 31/366 (8%) Query: 11 GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70 G +EL + + G P R Q+ WIY G+ +S + R + SI Sbjct: 22 GASVDELTTWVQQQGQPG----YRGKQLHNWIYHHGVHKISDISVFPKTWREQVAD-VSI 76 Query: 71 IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130 I + + DGT K+LL+ I IETV IP R T+CVS+QVGC + C F Sbjct: 77 GRSSIDHQSFATDGTEKYLLQLADGEI-----IETVGIPSDKRLTVCVSTQVGCPMACDF 131 Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 C TG RNL EI+ QVL + + +++S++V MGMGEP Sbjct: 132 CATGKGGFKRNLNRGEIVDQVLTVQE-----------------NFQQRVSHVVFMGMGEP 174 Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSND 249 L N +NV +L + L +R +T+ST G I ++ E + V LA+SLHA + Sbjct: 175 LLNTENVILALKCLNQD--LGIGQRSLTVSTVGIRDRIRQLAEHHLQVTLAVSLHAPNQK 232 Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309 LR ++P + YP+E L+ CR Y ++ R+TFEY++L G+ND P AL L + L+G Sbjct: 233 LREQIIPSAKTYPIEQLLAECREYVEITGR-RVTFEYILLAGVNDLPEQALELSQRLRGF 291 Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369 + +NLIP+NP +Y ++ I F +++ + IR RGL++ AACGQL+ Sbjct: 292 QSHVNLIPYNPIQEADYQRPNRDRIHAFVNILQQQKIAVSIRYSRGLEVDAACGQLRKRQ 351 Query: 370 KRIPKV 375 I + Sbjct: 352 NVIKQK 357 >gi|31789377|gb|AAP58494.1| conserved hypothetical protein [uncultured Acidobacteria bacterium] Length = 413 Score = 393 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 154/392 (39%), Positives = 216/392 (55%), Gaps = 37/392 (9%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M+ + + R ELE L ++G P R QI++W+Y RGI DF MSD+ +++ Sbjct: 43 MSNHTRTDIAESERHELEHTLERLGHP----RFHARQIFQWVYKRGITDFALMSDLGRDL 98 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------- 112 R L + I P + ++ S DGT K+LLR IE+V+IP+++ Sbjct: 99 RAQLAESCVITTPVVERQERSQDGTVKFLLRL-----ADGRHIESVFIPDETPAGPDGSP 153 Query: 113 ---RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169 R T CVS+QVGC++ C+FC TG + R+LTA EI QV + LG Sbjct: 154 RAARITFCVSTQVGCAMKCAFCLTGKMGIDRSLTAGEIAGQVRVLARELGFLETR----- 208 Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIA 229 NIV+MGMGEPL N++ K+L + +D G + S RR+TLST G +P + Sbjct: 209 ----------FNIVLMGMGEPLHNYEETMKALRVLADEHGFAMSARRMTLSTVGVLPALE 258 Query: 230 RVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVM 288 R+ E + LAISLHA + D R++LVPINRKY L+ L+DACR +P L RITFEYV+ Sbjct: 259 RLATEPLMPNLAISLHATTEDQRDLLVPINRKYGLKELLDACRRFP-LKRRERITFEYVL 317 Query: 289 LKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSS 348 L+ +ND+P DA L+K+L GI K+NL+P N G + + +F+ + G Sbjct: 318 LREVNDTPEDARRLVKLLHGIKGKVNLLPLNEAAGIPFERPSDDRVNSFARILADHGIPV 377 Query: 349 PIRTPRGLDILAACGQLKSLSKRIPKVPRQEM 380 +R RG DI AACGQL + S R R M Sbjct: 378 SVRKSRGRDIRAACGQLITESDRKAPGARLAM 409 >gi|163786382|ref|ZP_02180830.1| hypothetical protein FBALC1_14392 [Flavobacteriales bacterium ALC-1] gi|159878242|gb|EDP72298.1| hypothetical protein FBALC1_14392 [Flavobacteriales bacterium ALC-1] Length = 346 Score = 393 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 127/368 (34%), Positives = 203/368 (55%), Gaps = 24/368 (6%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 +KK+ + + +E+L + +K G R +Q+++W++ + F+ M++IS E R Sbjct: 2 EVKKKDIRALTKEQLRDFFVKQGDKA----FRGNQVYEWLWQKSAHSFEDMTNISLETRQ 57 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 +L +F I + ++ + S DGT K +R I +E+V IP +R T CVSSQV Sbjct: 58 MLEANFVINHIKVDQMQRSSDGTIKNAVRLHDDLI-----VESVLIPTATRTTACVSSQV 112 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GCSL C FC T K +RNL +EI QV+ I+ R +SNI Sbjct: 113 GCSLDCKFCATARLKRMRNLNPDEIYDQVVA-------------IDNESRLYHNRPLSNI 159 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 V MGMGEPL N++NV K++ + GL S +RI +STSG I ++ ++ + LA+ Sbjct: 160 VFMGMGEPLMNYNNVLKAIDKITSPEGLGMSPKRIVVSTSGVPKMIKKMADDKVKFKLAV 219 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH+ +D+R ++P N +PL L +A +++ + RIT+EYV+ GIND +D Sbjct: 220 SLHSAIDDVRTSIMPFNATFPLNDLREALQYWYAAT-KNRITYEYVVWDGINDKRKDVDA 278 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L++ K P+K+NLI +NP E+ ++ K + + ++ + + +R RG DI AA Sbjct: 279 LVEFCKFAPSKVNLIEYNPIDDGEFQQANSKALDMYVNVLEANNITVTVRRSRGKDIDAA 338 Query: 362 CGQLKSLS 369 CGQL + S Sbjct: 339 CGQLANKS 346 >gi|94987122|ref|YP_595055.1| ribosomal RNA large subunit methyltransferase N [Lawsonia intracellularis PHE/MN1-00] gi|123082152|sp|Q1MQJ3|RLMN_LAWIP RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|94731371|emb|CAJ54734.1| predicted Fe-S-cluster redox enzyme [Lawsonia intracellularis PHE/MN1-00] Length = 358 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 146/367 (39%), Positives = 206/367 (56%), Gaps = 25/367 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+ + E E ++ + R QIW+W++ + I D + M+++ Q++R L Sbjct: 2 INLLNITYPEFESLIV---TTLQEKTYRAMQIWQWVWQKQITDIESMTNLPQKIRASLTA 58 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVSSQ 121 I PEIV + S DGT+K+LLR + IETV IP R T C+SSQ Sbjct: 59 LIKINLPEIVTIQQSSDGTKKFLLRLSDGAL-----IETVLIPSIDKAGNIRITQCLSSQ 113 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGCS+ C+FC T T +RNLTA EI+ QVLLA+ L D + I I N Sbjct: 114 VGCSMGCTFCSTATMGFIRNLTAGEIVSQVLLAKLHLNDNKPDKPI-----------IRN 162 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 IV MGMGEPL N + ++L I GL+FS RRIT+ST G I + E LA+ Sbjct: 163 IVFMGMGEPLLNLTELTRALHILHSEKGLNFSARRITVSTCGIKKGIQALSENGLAFLAL 222 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA + +LR+ ++P K+ L+ LID ++Y L +ITFEY++L GINDSP A Sbjct: 223 SLHASNQELRSTIMPKAAKWDLKELIDTLKNY-SLKKREKITFEYLLLGGINDSPEHAKE 281 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L K++ I K+NLIP+NP G YL +++I+ F + + G + +R +G DI AA Sbjct: 282 LAKLITDIKGKLNLIPYNPAQGQPYLKPTEENILKFQKVLWSKGIVTILRKSKGQDINAA 341 Query: 362 CGQLKSL 368 CGQLK+ Sbjct: 342 CGQLKTT 348 >gi|205829715|sp|Q8YZV0|RLMN_ANASP RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase Length = 355 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 126/365 (34%), Positives = 183/365 (50%), Gaps = 31/365 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 L+G EL + + G P R Q+ WIY +G+R +S S++ R + Sbjct: 21 PLLGASVTELTSWVQQQGQPA----YRGKQLHDWIYHKGVRSLTDISVFSKQWRAAVAD- 75 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 I I ++ DGT K+LL+ I +E V IP R T+CVS+QVGC + Sbjct: 76 VPIGRSTIHHRSVASDGTVKYLLQLSDGEI-----VEAVGIPTDKRLTVCVSTQVGCPMA 130 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC TG RNL EI+ QVL + +++S++V MGM Sbjct: 131 CDFCATGKGGYKRNLERHEIVDQVLTVQE-----------------DFQQRVSHVVFMGM 173 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 GEPL N +NV L + +G +R +TLST G I+ + E + V LA+SLHA Sbjct: 174 GEPLLNTENVLAGLRSLNQDVG--IGQRSLTLSTVGIRDRISELAEHHLQVTLAVSLHAP 231 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 + LR L+P R Y +E L+ CR Y ++ RI+FEY++L G+ND P AL L K L Sbjct: 232 NQALREQLIPSARSYHIEDLLAECREYVAITGR-RISFEYILLAGVNDLPEHALELSKHL 290 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +G +NLIP+N +Y I F +++ + +R RGL+ AACGQL+ Sbjct: 291 RGFQNHVNLIPYNSIDEVDYKRPSGDRIQAFLTVLQQQHIAVSVRYSRGLEADAACGQLR 350 Query: 367 SLSKR 371 + + R Sbjct: 351 TKASR 355 >gi|31789482|gb|AAP58595.1| conserved hypothetical protein [uncultured Acidobacteria bacterium] Length = 396 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 148/353 (41%), Positives = 207/353 (58%), Gaps = 23/353 (6%) Query: 31 VRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLL 90 R +QI++WI+ R +GM+D+S+ +R L+ F++ P IV ++ S DGTRK +L Sbjct: 62 PRFHATQIYRWIHRRAATSVEGMTDLSKALRTRLDHEFTLSTPRIVGDETSADGTRKLVL 121 Query: 91 RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150 R IE+V+IP+ T CVS+QVGC++ C FC TG LVR+LTA EI Q Sbjct: 122 ELADRR-----RIESVFIPDTPAMTFCVSTQVGCAMACGFCLTGKMGLVRHLTAGEIAGQ 176 Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210 V + S G NIV+MGMGEPL N+DN K+L + GL Sbjct: 177 VRVLASATGLLDQS---------------FNIVLMGMGEPLHNYDNTMKALRMLHAEAGL 221 Query: 211 SFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 + S RR+TLST G VP + R+ +E + LA+SLHA +++ R LVP NRKYPL ++DA Sbjct: 222 AVSPRRVTLSTVGIVPGLERLAKESLMPNLAVSLHATTDEQRTALVPPNRKYPLAAILDA 281 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 CR +P L RITFEYV+L+G+ND+P DA L+++L GI +K+NLIP NP PG + Sbjct: 282 CRAFP-LKKRNRITFEYVLLEGVNDTPEDAKRLVRLLSGIKSKVNLIPLNPAPGIPFSRP 340 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQI 382 + F++ + R+ + +R RG DI AACGQL K Q+M + Sbjct: 341 PDARVDRFADVLARAHLTVSVRKSRGRDIRAACGQLIVEGG-ASKTAAQQMAL 392 >gi|154147902|ref|YP_001407255.1| radical SAM protein [Campylobacter hominis ATCC BAA-381] gi|205829692|sp|A7I414|RLMN_CAMHC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|153803911|gb|ABS50918.1| radical SAM enzyme, Cfr family [Campylobacter hominis ATCC BAA-381] Length = 358 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 136/381 (35%), Positives = 209/381 (54%), Gaps = 42/381 (11%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++L+ +EL E L + R QI++WIY + + DF M ++ ++R L Sbjct: 2 KNLLDFSLDELGELLK--------PKFRAKQIYEWIYHKNVDDFLQMKNLPLQMREDLAN 53 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------------R 113 F I + + S DG++K+L IE+V +P K R Sbjct: 54 EFYIGGLNVSKCEQSVDGSKKYLFELKD-----GKTIESVLLPMKDEITDENGEILRHKR 108 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 T+CVSSQVGC + C+FC T VRNL+A EI+ Q+ L + + Sbjct: 109 YTICVSSQVGCKIGCAFCLTAKGGFVRNLSAGEIVEQIRLIKKIN--------------K 154 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233 + N+V MGMGEPL N +NV K++ I + GL+ S RR T+STSG I ++GE Sbjct: 155 IPYERRINVVYMGMGEPLNNLENVAKAIKILIQNEGLAISPRRQTISTSGLSSQIKKLGE 214 Query: 234 E-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 +GV+LAISLHAV+++LR L+PINR Y + ++ A R +P + +R+ FEY+++ G+ Sbjct: 215 MNLGVLLAISLHAVNDELREKLMPINRAYNIASIMQAVREFP-IDLRKRVMFEYLVMDGV 273 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 NDS DA L+++L GI AK+NLI FNP G ++ +++++ F + + G + IR Sbjct: 274 NDSINDAKTLVRLLNGIKAKVNLIYFNPHIGSKFHRPSEENMIKFQDYLSVHGITCTIRQ 333 Query: 353 PRGLDILAACGQLKSLSKRIP 373 +GLDI AACGQL+ + + Sbjct: 334 SKGLDISAACGQLREKNLKEK 354 >gi|326203176|ref|ZP_08193042.1| radical SAM enzyme, Cfr family [Clostridium papyrosolvens DSM 2782] gi|325986822|gb|EGD47652.1| radical SAM enzyme, Cfr family [Clostridium papyrosolvens DSM 2782] Length = 349 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 135/362 (37%), Positives = 196/362 (54%), Gaps = 30/362 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+ M EELE+ L ++G + R QI+KW GIR F M++IS+++R L + Sbjct: 2 INLMDMTLEELEQMLSEMG----QQKFRAKQIFKWT-NSGIRSFDDMTNISKQLRDELVK 56 Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I +I D+ S D T K+L I IE+V + K T C+SSQ GC Sbjct: 57 VTKISRIKIADKLQSQIDSTVKYLFELEDGNI-----IESVIMEYKHGFTACISSQAGCR 111 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC + + RNLT E+L QV+ + G +I +IV+M Sbjct: 112 MGCKFCASTGAEFSRNLTPGEMLDQVMTMQE-----------------DSGNRIGHIVLM 154 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEPL N++NV K L I + GL R I+LST G VP + ++ +E I + L++SLH Sbjct: 155 GIGEPLDNYENVIKFLKIVNHPDGLMIGMRNISLSTCGVVPRMLQLAQENIPITLSVSLH 214 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 + +D R+ ++P+N+ Y ++ LI AC+ Y S RRITFEY M+ G NDS +DA L Sbjct: 215 SARDDKRSAMMPVNKAYCIDKLISACKIYTE-STKRRITFEYAMISGENDSEQDARELAG 273 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKG+ +NLIP N G Y S + I F ++ G + +R G DI AACGQ Sbjct: 274 LLKGMLCHVNLIPVNTVTGNGYKKSSRIHIDKFKNILESKGIETTVRRELGSDINAACGQ 333 Query: 365 LK 366 L+ Sbjct: 334 LR 335 >gi|257469926|ref|ZP_05634018.1| florfenicol resistance protein [Fusobacterium ulcerans ATCC 49185] gi|317064156|ref|ZP_07928641.1| radical SAM domain-containing protein [Fusobacterium ulcerans ATCC 49185] gi|313689832|gb|EFS26667.1| radical SAM domain-containing protein [Fusobacterium ulcerans ATCC 49185] Length = 350 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 133/371 (35%), Positives = 205/371 (55%), Gaps = 28/371 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + ++ELEE ++ +G+ + QI+ W++ + +RD ++++S + R LL Sbjct: 3 EKINLLNLNQQELEELVISLGM----KKFYGKQIFNWLHQKIVRDLNEITNLSLKDRELL 58 Query: 65 NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQV 122 ++ I + ++ +++S D T K+L + IETV + K R TLC+SSQV Sbjct: 59 SEKAYIPFLNLLKQQVSKIDKTEKFLFKLED-----GNTIETVLLRHKDKRNTLCISSQV 113 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C+FC TG VRNL EI+ QV + G I+NI Sbjct: 114 GCPVKCAFCATGQDGFVRNLDVNEIINQVYTVER--------------RLTKQGSNINNI 159 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLAI 241 V MGMGEPL N NV K+L I S+ G++ SKR+IT+STSG VPNI + + E++ + LAI Sbjct: 160 VFMGMGEPLLNLSNVLKALDILSNENGINISKRKITISTSGIVPNIEKILLEKLPIELAI 219 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH+ N R++++P+NR YPLE L + Y + RI+FEY+M+ N S DA Sbjct: 220 SLHSAINAKRDMIIPVNRSYPLEDLYAILQEYQRQTKR-RISFEYIMINDFNVSDIDANA 278 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLDILA 360 L + +NLIP+NP G E+ +K I F +K + +R +G DI Sbjct: 279 LADFVHEFDHVVNLIPYNPVAGTEFERPSEKKIEKFFTFLKDVRKVNVTLRREKGTDIDG 338 Query: 361 ACGQLKSLSKR 371 ACGQL+ + + Sbjct: 339 ACGQLRQKAPK 349 >gi|219854612|ref|YP_002471734.1| hypothetical protein CKR_1269 [Clostridium kluyveri NBRC 12016] gi|219568336|dbj|BAH06320.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 362 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 132/370 (35%), Positives = 203/370 (54%), Gaps = 31/370 (8%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M ++ +++ EELE + + R SQI WIY + DF M++IS+ V Sbjct: 1 MQYM--YNILNFNIEELENWMK----VNDESKFRASQIMDWIYKKNQYDFNYMTNISKNV 54 Query: 61 RHLLNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119 L ++F I PE+++++ S T K+L +F + I IETV + + ++CVS Sbjct: 55 IEKLKKNFYIGIPELIEKQKSKSQDTFKFLYKFQDKNI-----IETVVMKYRHGNSICVS 109 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 +QVGC + C FC + +VRNLT+ EIL Q+L ++ + +I Sbjct: 110 TQVGCRMGCKFCASTVNGMVRNLTSGEILAQILKSQ-----------------TEINERI 152 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVM 238 SNIV+MG GEPL N+DNV K L++ + L+ +R ITLST G VP I + E + + Sbjct: 153 SNIVLMGSGEPLDNYDNVLKFLNMVNSKYSLNIGQRHITLSTCGIVPKIMDLANENLQIT 212 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LAISLH+ N R ++PI KY +E +I AC++Y + R++FEY ++KG+NDS Sbjct: 213 LAISLHSPDNFSRRDMMPIANKYSIEEIIYACKYYINKTGR-RVSFEYALVKGVNDSLEF 271 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L+++LKG+ +NLIP N ++ S + +I F + + + IR G DI Sbjct: 272 AERLVQLLKGLLCHVNLIPVNEVKENDFKKSSEDNIKKFYNKLIENKIETTIRREMGSDI 331 Query: 359 LAACGQLKSL 368 AACGQL+ Sbjct: 332 DAACGQLRRR 341 >gi|291297322|ref|YP_003508720.1| radical SAM enzyme, Cfr family [Meiothermus ruber DSM 1279] gi|290472281|gb|ADD29700.1| radical SAM enzyme, Cfr family [Meiothermus ruber DSM 1279] Length = 342 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 126/363 (34%), Positives = 186/363 (51%), Gaps = 32/363 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 + L+ + EEL R Q+ W+Y +G R + M+D+ + +R Sbjct: 6 DQIPLLALPIEEL-----------PGQGYRRGQLAAWLYAKGARQWDEMTDLPKALRAEW 54 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + + I V S DG+ K+L + E VY+P +R T+C+SS VGC Sbjct: 55 AEQYRISEFTEVAPFPSQDGSVKYLFTLLD-----GQKTEAVYMPYLNRKTICISSMVGC 109 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 C+FC TG RNLTA E+L QVL A P R+I N+V+ Sbjct: 110 PAGCTFCATGRMGFGRNLTAAEMLDQVLFAAYHQQHAP--------------REIRNVVL 155 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MGMGEPL N +NV K+L GL+ S RRITLST G I ++ E + V LA+SL Sbjct: 156 MGMGEPLLNLENVFKALERMLHPEGLAMSPRRITLSTVGIPRGIYKMAEWGLEVRLALSL 215 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA ++ R ++P +Y + +++A RHY + RIT EY +LKG+ND A L Sbjct: 216 HAPDDETRQRIIPTAHRYSIAEIMEAVRHYYAKTKR-RITLEYTLLKGVNDHDWQARALA 274 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 + +G+ +NLIP+NPW G + + + I+ F+ +++ G + +R RG D+ AACG Sbjct: 275 QHFRGLSVHMNLIPWNPWEGAPHQGTPRAQILKFAAILEQQGIPTSVRWSRGRDVGAACG 334 Query: 364 QLK 366 QL Sbjct: 335 QLA 337 >gi|78045218|ref|YP_360312.1| radical SAM protein [Carboxydothermus hydrogenoformans Z-2901] gi|123770585|sp|Q3AC22|RLMN_CARHZ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|77997333|gb|ABB16232.1| radical SAM enzyme, Cfr family [Carboxydothermus hydrogenoformans Z-2901] Length = 342 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 122/361 (33%), Positives = 190/361 (52%), Gaps = 29/361 (8%) Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69 + + EE+ L + R QI +WI+ G DF M+++ +R L ++F Sbjct: 5 LDLNSEEIVAWLKEN----NEKSFRLKQINEWIFKHGELDFNKMTNLPVRLREKLKENFL 60 Query: 70 IIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 + +I+ K S DG + K+LL+ IE V + + T+C+S+QVGC + C Sbjct: 61 LPSLKIIHSKKSRDGQSIKYLLKLKDNL-----GIEAVLLKYRYGNTVCLSTQVGCKMGC 115 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG RNLTA E++ Q+L+ + S KI+ +V+MG G Sbjct: 116 KFCATGLGGFSRNLTAGEMIEQILVLK-----------------ASSSEKITRVVLMGSG 158 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVS 247 EPL NF V K + ++ L+ S R+IT+ST G VP I + EE + V LAISLHA Sbjct: 159 EPLDNFTEVLKFMRKINEKDCLNISYRKITVSTCGMVPQIKALAEEKLPVTLAISLHAPD 218 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 + LRN L+PIN+++ L L+DA ++ + R++FEY +++ +ND+ AL L ++L+ Sbjct: 219 DALRNELIPINKRWGLAELLDAAWYFIDKTGR-RVSFEYALIENVNDTVEHALKLAQLLQ 277 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 +NLIP+N + + I F E +KR+G +R G +I ACGQLK+ Sbjct: 278 RKLVHVNLIPYNTIEKRNFKTPSVEKINKFKEVLKRAGIPVTVRRELGDEIDGACGQLKA 337 Query: 368 L 368 Sbjct: 338 K 338 >gi|113476505|ref|YP_722566.1| radical SAM protein [Trichodesmium erythraeum IMS101] gi|123056519|sp|Q110I1|RLMN_TRIEI RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|110167553|gb|ABG52093.1| radical SAM enzyme, Cfr family [Trichodesmium erythraeum IMS101] Length = 345 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 130/362 (35%), Positives = 188/362 (51%), Gaps = 31/362 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L+G+ +L E + + G P R Q+++WIY +G + ++ S++ R ++ Sbjct: 11 TPLLGLSLAKLTEWVQQQGQPA----YRGKQLYQWIYQKGAKSLADITVFSKQWREEIS- 65 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 +F I I ++ D T K+LL+ I IETV IP R T+CVSSQVGC + Sbjct: 66 NFPIGRSVIHHRSVAPDATVKYLLKLSDGNI-----IETVGIPTYKRLTVCVSSQVGCPM 120 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG RNL A EI+ QVL + R++S+IV MG Sbjct: 121 ACDFCATGKGGFSRNLEAHEIIDQVLTVQE-----------------DFERRVSHIVFMG 163 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHA 245 MGEPL N NV ++ + L +R IT+STSG I ++ ++ V LA+SLHA Sbjct: 164 MGEPLLNTKNVLAAVRSLNQD--LGIGQRLITISTSGIRDRIRQLAQHKLQVTLAVSLHA 221 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + LR L+P + YPL LI CR Y ++ RI+FEY++L ND P A L K Sbjct: 222 SNQRLREHLIPSAKFYPLADLISECREYVKITKR-RISFEYILLASFNDLPDHARELAKN 280 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 ++G +NLIP+NP +Y Q+ I TF+ + + IR RGL+ AACGQL Sbjct: 281 MRGFQCHVNLIPYNPISEVDYQRPTQEMIKTFANALAEQNIAVSIRYSRGLEANAACGQL 340 Query: 366 KS 367 ++ Sbjct: 341 RA 342 >gi|333031476|ref|ZP_08459537.1| Ribosomal RNA large subunit methyltransferase N [Bacteroides coprosuis DSM 18011] gi|332742073|gb|EGJ72555.1| Ribosomal RNA large subunit methyltransferase N [Bacteroides coprosuis DSM 18011] Length = 344 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 130/374 (34%), Positives = 197/374 (52%), Gaps = 30/374 (8%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN + K+ L+GM EL+ + + G+P + QI W+Y + + + M+++S++ Sbjct: 1 MN-MDKKPLLGMTLSELQVLVSQAGLP----KFTAKQIASWLYKKKVTNIDEMTNLSKKN 55 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R LLNQ +++ + S DGT K+L +G IE+VYIP++ R TLCVSS Sbjct: 56 RDLLNQEYTVGAANPIQAVKSVDGTIKYLF-----SVGDKNSIESVYIPDEDRATLCVSS 110 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC + C FC TG Q NL+A +IL Q+ ++ Sbjct: 111 QVGCKMNCLFCMTGKQGFSGNLSANQILNQIQTIPESD-------------------TLT 151 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 NIV MGMGEP+ N D V K L I + G +S +RIT+ST G R +E LA Sbjct: 152 NIVFMGMGEPMDNLDEVLKVLEILTSDYGYKWSPKRITVSTVGVRKGFERFLQESDCHLA 211 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +S+H R L+P + P+ +++ R Y S RR++FEY+M KG+NDS A Sbjct: 212 VSIHTPIASQRKDLMPAEKGLPISEIVNILRDY-DFSKQRRLSFEYIMFKGVNDSISHAK 270 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L+++L G+ ++NLI F+ P + SD + + F + + ++G + IR RG DI A Sbjct: 271 KLLELLDGLECRVNLIRFHAIPNVDLNGSDMETMTVFRDYLTKNGVFTTIRASRGEDIFA 330 Query: 361 ACGQLKSLSKRIPK 374 ACG L ++ K K Sbjct: 331 ACGMLSTMEKNKNK 344 >gi|167470721|ref|ZP_02335425.1| radical SAM domain protein, Cfr family [Yersinia pestis FV-1] Length = 319 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 144/324 (44%), Positives = 190/324 (58%), Gaps = 19/324 (5%) Query: 60 VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119 +R L + I PE+ E+ S DGT KW ++ ++ETVYIPE R TLCVS Sbjct: 2 LRAKLQRVTEIRAPEVQKEQRSVDGTIKWAIKVGD------QQVETVYIPEADRATLCVS 55 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 SQVGC+L C FC T Q RNL EI+ QV A ++G + + R I Sbjct: 56 SQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIG----------SLKSTGTRPI 105 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 +N+VMMGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V L Sbjct: 106 TNVVMMGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVAL 165 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPR 297 AISLHA ++D+R+ +VPINRKY +E + A R Y S N R+T EYVML INDS Sbjct: 166 AISLHAPTDDIRDEIVPINRKYNIETFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSTE 225 Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 A L + LK P KINLIP+NP+PG Y S + FS+ + G+++ +R RG D Sbjct: 226 QAHQLAECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDD 285 Query: 358 ILAACGQLKSLS-KRIPKVPRQEM 380 I AACGQL R + +++M Sbjct: 286 IDAACGQLAGEVIDRTKRTLKKKM 309 >gi|294054447|ref|YP_003548105.1| radical SAM enzyme, Cfr family [Coraliomargarita akajimensis DSM 45221] gi|293613780|gb|ADE53935.1| radical SAM enzyme, Cfr family [Coraliomargarita akajimensis DSM 45221] Length = 384 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 132/375 (35%), Positives = 204/375 (54%), Gaps = 26/375 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SL G E L EA+ G P R Q+ +W+Y + + + M+++ + R L+ Sbjct: 7 KPSLFGETLESLTEAVKAAGYPG----FRAKQVMEWLYKKRVGTWDAMTNLPKAFRGWLD 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP--------EKSRGTLC 117 + + + + + +K S D T+K+LL + + IETV I EKSR T+C Sbjct: 63 ETYILYPTQPLLDKRSDDVTQKFLLELEDKSL-----IETVLIRAPQTGVGQEKSRKTVC 117 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 VS QVGC+ C FC +G RNL E++ Q++ + ED Sbjct: 118 VSIQVGCAYGCKFCASGLAGFRRNLGPAEVVSQLMHICRM-------EDAHTERAKDEIA 170 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IG 236 NIV MGMGEPL N+D + +++ I + GL+F RRIT+STSG P I ++ EE + Sbjct: 171 SFDNIVFMGMGEPLANYDTLVRTIKILNAEWGLNFGARRITVSTSGVAPKIKQLAEEGVA 230 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 V LAISLH +N++RN ++P+N++YPLE LI A + + +T E++M++ INDS Sbjct: 231 VRLAISLHGATNEVRNKIMPVNKRYPLEELIPAAKAFKERHGRM-LTLEFIMIEDINDSI 289 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 A L KI K + A +N IP+N G E++ + F + ++++G S IR +G Sbjct: 290 DQARELAKIAKDLHAHVNCIPYNKVEGLEWVRPSVRKQDAFVDYLRKAGVSVTIRREKGH 349 Query: 357 DILAACGQLKSLSKR 371 DI AACGQL+ +++ Sbjct: 350 DINAACGQLRLKTEK 364 >gi|160933496|ref|ZP_02080884.1| hypothetical protein CLOLEP_02342 [Clostridium leptum DSM 753] gi|156867373|gb|EDO60745.1| hypothetical protein CLOLEP_02342 [Clostridium leptum DSM 753] Length = 359 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 131/369 (35%), Positives = 203/369 (55%), Gaps = 30/369 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K+ + M +EL + G P + QI++W++ RG+ F+ M+D+S+ VR L Sbjct: 7 QKKDIKSMTLDELRADMKIQGQPS----YKALQIYRWLH-RGVSSFEEMTDLSKIVRQFL 61 Query: 65 NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + + I + ++ +S D T K+L F +E V + + ++C+S+QVG Sbjct: 62 TEKYYISVARVENKLVSDYDNTIKYLFSF-----ADGQCVEAVLMEYQHGRSICISTQVG 116 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C+FC TG RNLTA E+L QV A+ G +ISNIV Sbjct: 117 CKMGCTFCATGLGGFQRNLTASEMLSQVQAAQK-----------------DAGVRISNIV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MGMGEPL N++ V + L + S G++ R I+LST G V I + EE + + L++S Sbjct: 160 LMGMGEPLDNYNQVIRFLRLVSSQEGMNLGMRHISLSTCGLVDRIYDLAEENLQLTLSVS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N +R+ +P+NRKYP+E L+ ACR+Y G + RI+FEY M+ G+NDS A L Sbjct: 220 LHAPNNAIRSRTMPVNRKYPIEELLKACRYYAGRTGR-RISFEYAMIDGVNDSDGCAKEL 278 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 LKG+ +NLIP NP Y S ++ F ++R+G ++ +R G DI A+C Sbjct: 279 AARLKGMLCHVNLIPVNPVREAGYQKSGRERQQAFIRILERAGITATVRRTLGADINASC 338 Query: 363 GQLKSLSKR 371 GQL+ + Sbjct: 339 GQLRRKHLK 347 >gi|297191769|ref|ZP_06909167.1| ribosomal RNA large subunit methyltransferase N [Streptomyces pristinaespiralis ATCC 25486] gi|197721713|gb|EDY65621.1| ribosomal RNA large subunit methyltransferase N [Streptomyces pristinaespiralis ATCC 25486] Length = 368 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 124/369 (33%), Positives = 180/369 (48%), Gaps = 25/369 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + E ++A+ IG R Q+ + + R D +DI R L Sbjct: 20 RHLADLTPAERKDAVASIG----EKPFRAKQLSQHYFARYAHDPAQWTDIPAAAREKLAT 75 Query: 67 HFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +V ISCD TRK L R + +E+V + R T+C+SSQ GC Sbjct: 76 ELLPDLMSVV-RHISCDDDTTRKTLWRLHDGTL-----VESVLMRYPDRVTMCISSQAGC 129 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EI+ Q++ G + +P ++SNIV Sbjct: 130 GMNCPFCATGQAGLDRNLSTAEIVHQIV---------DGMRALRDGEVPGGPARLSNIVF 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 MGMGEPL N+ V ++ +D GL S+R IT+ST G VP + R +E LA+ Sbjct: 181 MGMGEPLANYKRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAV 240 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++LR+ LVP+N ++ + ++DA Y S RI+ EY +++ IND Sbjct: 241 SLHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKSGR-RISIEYALIRDINDQAWRGDL 299 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++LKG +NLIP NP PG ++ S +D F E I G +R RG +I A Sbjct: 300 LGRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTVRDTRGQEIDGA 359 Query: 362 CGQLKSLSK 370 CGQL + + Sbjct: 360 CGQLAAQER 368 >gi|219847237|ref|YP_002461670.1| ribosomal RNA large subunit methyltransferase N [Chloroflexus aggregans DSM 9485] gi|219541496|gb|ACL23234.1| radical SAM enzyme, Cfr family [Chloroflexus aggregans DSM 9485] Length = 361 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 124/374 (33%), Positives = 193/374 (51%), Gaps = 28/374 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +++ L EL E L G P R Q+++ +YV + M+D+ +R Sbjct: 1 MEQRCLYDYNLAELTELLKAWGEPP----FRARQLYRHLYVNLTASVERMTDLPTTLRRR 56 Query: 64 LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L + + + +I G TRK L R P + +ETV + R T+CVS+Q Sbjct: 57 LAE-LPLSTLRLERVQIGDAGLTRKALFRLPDGAV-----VETVLMVYPDRSTVCVSTQA 110 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L+RNL++ EI+ Q + A ++ M +++N+ Sbjct: 111 GCGMGCVFCATGRLGLLRNLSSGEIVAQAIWASQ---------ELRAMNAAGPSGRVTNL 161 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAI 241 V MGMGEP N+D +++ D G + R +T+ST G V I R+ E + + LAI Sbjct: 162 VFMGMGEPFANYDRWWQAVERLHDPQGFNLGARSMTVSTVGLVKGIERLANERLPINLAI 221 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA + LR+ L+P+NR+YP+ L+ A R Y + RR++FEYV+L+G ND P A+ Sbjct: 222 SLHAPDDTLRSELMPVNRRYPIAELMAATRQYIAKT-RRRVSFEYVLLQGKNDHPHQAIA 280 Query: 302 LIKILKG------IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 L ++L+ I +NLIP+NP PG S+ + + F + + G +R RG Sbjct: 281 LARLLRREAPPGPILVHVNLIPWNPVPGTPLGRSEWERVNAFQQILTDYGIPCTVRVERG 340 Query: 356 LDILAACGQLKSLS 369 ++I AACGQL + Sbjct: 341 VEIAAACGQLAGQT 354 >gi|255535320|ref|YP_003095691.1| radical SAM enzyme, Cfr family protein [Flavobacteriaceae bacterium 3519-10] gi|255341516|gb|ACU07629.1| radical SAM enzyme, Cfr family protein [Flavobacteriaceae bacterium 3519-10] Length = 358 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 124/370 (33%), Positives = 198/370 (53%), Gaps = 26/370 (7%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 +N +K + + EEL+ + +G R Q+++W++ + + M+++S+++ Sbjct: 12 INTMK--DIRTLSLEELQNYFVTLG----EKPFRAKQVYEWLWSKNLHSIDEMTNLSKDL 65 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R + Q ++I + + S DGT K ++ + +E+V IP ++R T CVSS Sbjct: 66 REKIAQEYTINPISVDQLQKSSDGTIKNGVKLHDGLL-----VESVLIPTETRTTACVSS 120 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGCSL C FC T K +RNL EI+ QV L I+ R +S Sbjct: 121 QVGCSLNCEFCATARLKRMRNLEVAEIVDQVAL-------------IDRQSKMYFDRPLS 167 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239 NIV MGMGEP+ N+ NV +++ + GL + RRIT+STSG I + +E + V L Sbjct: 168 NIVFMGMGEPMMNYKNVVEAIRKITAPDGLGMAPRRITVSTSGIPKMIKMLADENLRVNL 227 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH+ RN ++P + ++PL ++D+ +H+ + +TFEY + KGIND D Sbjct: 228 ALSLHSAIEKTRNEIMPFSDRFPLTDIMDSLKHWYEKTGNI-VTFEYCVWKGINDEDEDI 286 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 LI+ K IP K+NLI +NP +Y ++ + ++ +G + IR RG DI Sbjct: 287 KALIRYCKQIPCKVNLIQYNPIGDGKYDRCNKAAEENYVRQLENAGITVLIRRSRGGDID 346 Query: 360 AACGQLKSLS 369 AACGQL + S Sbjct: 347 AACGQLANKS 356 >gi|86134466|ref|ZP_01053048.1| radical SAM superfamily protein [Polaribacter sp. MED152] gi|85821329|gb|EAQ42476.1| radical SAM superfamily protein [Polaribacter sp. MED152] Length = 345 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 121/368 (32%), Positives = 203/368 (55%), Gaps = 24/368 (6%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 +KK+ + + +E+L + ++ G R +Q+++W++ + + F+ M++IS++ R Sbjct: 1 MIKKKDIRALTKEQLRDFFVENGDKA----FRGNQVYEWLWSKSLHTFEDMTNISKKTRE 56 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 +L +HF I + ++ + S DGT K ++ + +E+V IP R T CVSSQV Sbjct: 57 MLEEHFVINHIKVDSMQKSADGTIKNGIKLHDGLV-----VESVLIPTPKRTTACVSSQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GCSL C FC T K +RNL +EI QV++ I+ K++NI Sbjct: 112 GCSLDCKFCATARLKRMRNLNPDEIYDQVVV-------------IDKQSRLYHNHKLTNI 158 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAI 241 V MGMGEPL N+ NV KS+ + + GL S +RIT+STSG I ++ EE+ LA+ Sbjct: 159 VFMGMGEPLMNYKNVLKSIEMITSPEGLGMSSKRITVSTSGVPKMIKKMADEEVKFNLAV 218 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH+ +++R ++P N +PL+ L ++ ++ + IT+EYV+ +GIND D Sbjct: 219 SLHSAIDEVRTSIMPFNTTFPLKDLKESLEYWYEKTKR-AITYEYVVWEGINDKKEDIAA 277 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L++ K +P K+NLI +NP ++ + + + ++ + +R RG DI AA Sbjct: 278 LVQFCKYVPCKVNLIEYNPIDDGQFQQASNAALNNYISNLEMHDITVNVRRSRGKDIDAA 337 Query: 362 CGQLKSLS 369 CGQL + + Sbjct: 338 CGQLANKA 345 >gi|238926270|ref|ZP_04658030.1| Fe-S-cluster redox enzyme [Selenomonas flueggei ATCC 43531] gi|238885950|gb|EEQ49588.1| Fe-S-cluster redox enzyme [Selenomonas flueggei ATCC 43531] Length = 346 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 130/363 (35%), Positives = 190/363 (52%), Gaps = 26/363 (7%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 ++ G + EL +AL GIP R R Q+ +W+Y RG F M ++ + +R L Sbjct: 2 NIFGWTKTELADALRAEGIP----RFRADQVIRWMYQRGAVSFDIMDNLPKTLRVRLAAL 57 Query: 68 FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 FSI P+I S DG T K L F ETV + ++CVS+Q GC + Sbjct: 58 FSIERPQIAARLTSTDGATIKLLYAF-----ADGQTAETVLMRHPYGNSVCVSTQAGCRM 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC + LVRNLT EI QV+ L G + IV+MG Sbjct: 113 GCAFCASTLHGLVRNLTVGEIAAQVIGMADYLRQ--------------EGAHVDTIVVMG 158 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 GEPL N+DNV +L + + S R ITLSTSG VP I R+ EE + + L+ISLHA Sbjct: 159 SGEPLENYDNVIGALRLLHADDTIGLSYRGITLSTSGIVPGILRLSEEGMPISLSISLHA 218 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + +LR+ L+P+NR YP+ ++ A + Y + R+T+EY++++ +ND R+A L ++ Sbjct: 219 PTEELRSSLMPVNRMYPMADVLRAAQTYAARTKR-RVTYEYILIRDVNDGIREAEQLAEL 277 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G A +NLIP NP L + + F ++ ++ +R G DI AACGQL Sbjct: 278 LRGQLASVNLIPINPVVERNLLRPSKGTVRRFQRVLEERHITATVRREMGTDIQAACGQL 337 Query: 366 KSL 368 +S Sbjct: 338 RSR 340 >gi|254392089|ref|ZP_05007278.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|294815391|ref|ZP_06774034.1| Ribosomal RNA large subunit methyltransferase N [Streptomyces clavuligerus ATCC 27064] gi|326443743|ref|ZP_08218477.1| ribosomal RNA large subunit methyltransferase N [Streptomyces clavuligerus ATCC 27064] gi|197705765|gb|EDY51577.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|294327990|gb|EFG09633.1| Ribosomal RNA large subunit methyltransferase N [Streptomyces clavuligerus ATCC 27064] Length = 368 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 123/369 (33%), Positives = 180/369 (48%), Gaps = 25/369 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + E +EA+ IG R Q+ + + R D +DI R L Sbjct: 20 RHLADLTPAERKEAVAAIG----EKPFRAKQLSQHYFARYAHDPAAWTDIPAAARERLAS 75 Query: 67 HFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +V +SCD TRK L R + +E+V + R T+C+SSQ GC Sbjct: 76 ELLPDLMSVV-RHVSCDNDTTRKTLWRLHDGTL-----VESVLMRYPDRVTMCISSQAGC 129 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EI+ Q++ G + +P ++SNIV Sbjct: 130 GMNCPFCATGQAGLDRNLSTAEIVHQIV---------DGMRALRDGEVPGGPARLSNIVF 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 MGMGEPL N+ V ++ +D GL S+R IT+ST G VP + R +E LA+ Sbjct: 181 MGMGEPLANYKRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAV 240 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++LR+ LVP+N ++ + ++DA Y S R++ EY +++ IND Sbjct: 241 SLHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKSGR-RVSIEYALIRDINDHAWRGDL 299 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++LKG +NLIP NP PG ++ S +D F E I G +R RG +I A Sbjct: 300 LGRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTVRDTRGQEIDGA 359 Query: 362 CGQLKSLSK 370 CGQL + + Sbjct: 360 CGQLAAAER 368 >gi|319760652|ref|YP_004124590.1| Ribosomal RNA large subunit methyltransferase N [Candidatus Blochmannia vafer str. BVAF] gi|318039366|gb|ADV33916.1| Ribosomal RNA large subunit methyltransferase N [Candidatus Blochmannia vafer str. BVAF] Length = 359 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 138/366 (37%), Positives = 203/366 (55%), Gaps = 16/366 (4%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 LKK +L+ M ++L K+G R+ QI WIY + DF M+++ +++R Sbjct: 2 MLKKINLLDMSPKKLLVFFNKLG----ECAFRSDQIMDWIYKKYCSDFNKMTNLHKDLRV 57 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 LNQ I P I E+ S DGTRKW++R +ETVYIP+ +R TLC+SSQ Sbjct: 58 KLNQISEINAPIITHEQESSDGTRKWMMRIHDDKY-----VETVYIPDNNRATLCISSQS 112 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L CSFC T ++NL EI+ QV + + + + I++I Sbjct: 113 GCALGCSFCGTAKLGFIKNLRTSEIVGQVWRIARFISHYNKQQVKNCNNL----IPITHI 168 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 V MGMGEPL N NV S+ I +S G + SK +TLSTSG VP I ++ + + V LA+S Sbjct: 169 VFMGMGEPLLNLMNVVSSIQIILNSSGFNLSKHHVTLSTSGVVPGIDKLKDMVDVSLAVS 228 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS--NARRITFEYVMLKGINDSPRDAL 300 LHA ++ +RN ++PIN+KY ++ L+ + R Y + N +++T EYV+L IND A Sbjct: 229 LHAPNDVIRNKIMPINKKYNIDCLLQSIRCYLQKTKSNNKKVTIEYVLLNRINDEIEHAH 288 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEY-LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L K L +P K+NL+ +N +Y + + F + +K G + IR RG DI Sbjct: 289 ELAKKLITLPCKVNLMRWNSIKNIKYLKSTSDARLNNFYKVLKNYGIVTTIRKVRGADIH 348 Query: 360 AACGQL 365 A+CGQL Sbjct: 349 ASCGQL 354 >gi|223940814|ref|ZP_03632646.1| radical SAM enzyme, Cfr family [bacterium Ellin514] gi|223890519|gb|EEF57048.1| radical SAM enzyme, Cfr family [bacterium Ellin514] Length = 378 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 121/379 (31%), Positives = 198/379 (52%), Gaps = 24/379 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + EEL+ ++ P R Q+ +W+YV + + M+++ + +R +L + Sbjct: 3 TDIKSYTSEELQARFKELNQPG----YRVGQLLEWLYVHRVASWDAMTNLPKGLREVLQK 58 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK--------SRGTLCV 118 F++ E+V + S D T+K+L + + IE+V IP R TLCV Sbjct: 59 EFTLQTLELVRRQGSRDTTQKFLWKLNDGAM-----IESVLIPANPALYGEASDRHTLCV 113 Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP----- 173 S+QVGC+ C FC +G + RNL EEI+ Q+L P Sbjct: 114 STQVGCAYGCKFCASGLEGWKRNLRVEEIVEQILAIERWNAAEEAKGSKPPEANPKPKTT 173 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233 V R I+N+V+MGMGEPL N++N+ K+L I + G R+IT+STSG P I ++ + Sbjct: 174 EVTRFINNLVIMGMGEPLANYENLLKALRILNAPWGGGIGARKITISTSGLAPQIRKLAD 233 Query: 234 E-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 + + LAISLH ++++RN ++P+N+KYPL+ L AC +Y + ITFEY+++ G+ Sbjct: 234 DPLQFRLAISLHGATDEVRNKIMPVNKKYPLKELTAACEYYQQKKDRM-ITFEYILIAGV 292 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 ND L ++ + AK+NLIP+N + + F +++ + +R Sbjct: 293 NDGLDQVKPLAQLAHRLNAKVNLIPYNKVEDLTWERPTEAAQEAFLATLEKERVVATLRR 352 Query: 353 PRGLDILAACGQLKSLSKR 371 +G DI AACGQL+ ++R Sbjct: 353 EKGHDIDAACGQLRLKTER 371 >gi|229816215|ref|ZP_04446525.1| hypothetical protein COLINT_03265 [Collinsella intestinalis DSM 13280] gi|229808223|gb|EEP44015.1| hypothetical protein COLINT_03265 [Collinsella intestinalis DSM 13280] Length = 348 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 116/375 (30%), Positives = 192/375 (51%), Gaps = 32/375 (8%) Query: 4 LKKES----LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59 +++ + + ++L+E + ++G P R Q+++W++ + + F M+++ Sbjct: 1 MERTNRSRDIRQFDLDDLKELMKELGQPA----FRAKQLYEWVHEKNVCSFDEMTNLPAG 56 Query: 60 VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119 +R L + F+ P + +++S DG+RK+LL F V +ETV +P +++ +C+S Sbjct: 57 LRQSLTETFAFKVPTELVKQVSKDGSRKYLLEFSD-----GVSVETVGMPNRNKLAVCIS 111 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 SQ GC++ C+FC TG L R+LTA+E++ QVL G+ ++ Sbjct: 112 SQAGCAMGCAFCATGLAGLSRSLTAQEMVDQVLHVSRDFGE-----------------RV 154 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVM 238 +++V MG GEP NFDN ++L + +D GL+ R +T+ST G +P I R E Sbjct: 155 TSVVFMGQGEPFANFDNTVEALRMLNDPEGLAIGARHLTVSTCGVIPGIRRFAELPEQFT 214 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LAISLH+ RN L+P +K+ L L +A + Y + R T+E+ M+ GIND+ + Sbjct: 215 LAISLHSAIQTTRNQLMPGVKKFTLLRLHEAIQEYVEKTGR-RPTYEFAMIDGINDTSPE 273 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 L+ G +NLI N P + S + + G + IR RG DI Sbjct: 274 MQALVDFCAGTLCHVNLIQLNDIPDSPFRPSPIDKVEALQRRLTMHGVETTIRNSRGGDI 333 Query: 359 LAACGQLKSLSKRIP 373 AACGQLK R Sbjct: 334 DAACGQLKQRRFRAR 348 >gi|254382049|ref|ZP_04997411.1| conserved hypothetical protein [Streptomyces sp. Mg1] gi|194340956|gb|EDX21922.1| conserved hypothetical protein [Streptomyces sp. Mg1] Length = 371 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 127/369 (34%), Positives = 182/369 (49%), Gaps = 25/369 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L M E EA+ IG R Q+ + + R D +DI R L Q Sbjct: 23 RHLADMTPAERREAVAAIG----EKPFRAKQLSQHYFARYAHDPAEWTDIPAASREKLQQ 78 Query: 67 HFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 ++ ISCD TRK L + + +E+V + R T+C+SSQ GC Sbjct: 79 ELLPDLMNVL-RHISCDDDTTRKTLWKLHDGTL-----VESVLMRYPDRVTMCISSQAGC 132 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EI+ Q++ G + +P ++SNIV Sbjct: 133 GMNCPFCATGQAGLDRNLSTAEIVHQIV---------DGMRALRDGEVPGGPARLSNIVF 183 Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 MGMGEPL N++ V ++ +D GL S+R IT+ST G VP + R +E LA+ Sbjct: 184 MGMGEPLANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAV 243 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++LR+ LVP+N ++ + ++DA Y S RI+ EY +++ IND Sbjct: 244 SLHAPDDELRDTLVPVNTRWNVREVLDAAWEYAEKSGR-RISIEYALIRDINDQAWRGDL 302 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L K+LKG +NLIP NP PG ++ S +D F E I R G +R RG +I A Sbjct: 303 LGKLLKGKRVHVNLIPLNPTPGSKWTASRPEDERAFVEAIARHGVPVTVRDTRGQEIDGA 362 Query: 362 CGQLKSLSK 370 CGQL + + Sbjct: 363 CGQLAASER 371 >gi|302865911|ref|YP_003834548.1| radical SAM enzyme, Cfr family [Micromonospora aurantiaca ATCC 27029] gi|315502468|ref|YP_004081355.1| radical sam enzyme, cfr family [Micromonospora sp. L5] gi|302568770|gb|ADL44972.1| radical SAM enzyme, Cfr family [Micromonospora aurantiaca ATCC 27029] gi|315409087|gb|ADU07204.1| radical SAM enzyme, Cfr family [Micromonospora sp. L5] Length = 381 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 120/370 (32%), Positives = 184/370 (49%), Gaps = 23/370 (6%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 + L + + + ++G P R Q+ + R +RD + M+D+ R Sbjct: 19 SMPPRHLADLDLPGRQALVAELGEPA----FRAKQVSNHYFGRLVRDPERMTDLPAATRE 74 Query: 63 LLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L V E DG TRK L R + +E+V + R T+C+SSQ Sbjct: 75 RLAGELLPTLLTPVRELACDDGATRKALWRLHDGSL-----VESVLMGYPDRVTVCISSQ 129 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC + C FC TG L RNL+ EI+ Q + + V+ ++S+ Sbjct: 130 AGCGMACPFCATGQAGLTRNLSTAEIVDQAVYLAGV---------AASGVVAGSPPRLSH 180 Query: 182 IVMMGMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVM 238 +V MGMGEPL N+ V ++ GL S+R IT+ST G VP I R+ E++ V Sbjct: 181 VVFMGMGEPLANYSRVVAAIRRLVAPAPEGLGLSQRHITVSTVGLVPAIRRLASEDLSVT 240 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLHA ++LR+ LVP+N+++ + ++DA Y + RR++ EY M+K +ND P Sbjct: 241 LALSLHAPDDELRDELVPVNQRWKVSEVLDAAWDYAA-TTGRRVSIEYAMIKDVNDQPWR 299 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L ++L G A +NLIP NP PG + S + F ++ +G S+ +R RG +I Sbjct: 300 ADLLGRLLAGKLAHVNLIPLNPTPGSRWDASPKPVEREFVRRLRDAGVSTTVRDTRGREI 359 Query: 359 LAACGQLKSL 368 ACGQL + Sbjct: 360 DGACGQLAAA 369 >gi|308071465|ref|YP_003873070.1| hypothetical protein PPE_04773 [Paenibacillus polymyxa E681] gi|305860744|gb|ADM72532.1| Conserved hypothetical protein [Paenibacillus polymyxa E681] Length = 365 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 133/385 (34%), Positives = 212/385 (55%), Gaps = 26/385 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +KKES+ G+ ++L L++ G H + R Q+W +Y + + DF M++I ++ L Sbjct: 1 MKKESIYGLTLDQLTAWLIEHG----HKKSRALQVWDALYRKRVTDFATMAEIHEDCTRL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +HFSI E ++ S DGT K+L R + IETV + K ++CV++QVG Sbjct: 57 LAEHFSIETLEEHVKQQSADGTVKFLFRLQDGNL-----IETVLMRHKFGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ CSFC +G K R+L++ EI+ Q++ + L G ++S++V Sbjct: 112 CNIGCSFCASGLLKKSRDLSSGEIVEQIMKVQLYLDQ------------ERPGDQVSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242 +MG+GEP NF N+ + + D GL+ R IT+STSG I + ++ V LAIS Sbjct: 160 VMGIGEPFDNFVNLSDFIRVIKDHKGLAIGPRHITVSTSGLADKIIEFADSDLHVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N++R ++ INR P+E L+ A +Y +N RIT EY++LK +ND AL L Sbjct: 220 LHAPNNEIRTRIMKINRAIPIEKLMQAIDYYLDKTNR-RITLEYILLKDVNDGKEHALEL 278 Query: 303 IKIL--KGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 +++ + A +NLIP+NP +Y S+ + I F + +K+ G S +R G+DI Sbjct: 279 AELVGHRRNLANVNLIPYNPVDEHSQYQRSESESITGFYDVLKKQGISCSVRLEHGVDID 338 Query: 360 AACGQLKSLSKRIPKVPRQEMQITG 384 AACGQL+S R + + Sbjct: 339 AACGQLRSKQIRKDAGGSRNAEREA 363 >gi|332664665|ref|YP_004447453.1| ribosomal RNA large subunit methyltransferase N [Haliscomenobacter hydrossis DSM 1100] gi|332333479|gb|AEE50580.1| Ribosomal RNA large subunit methyltransferase N [Haliscomenobacter hydrossis DSM 1100] Length = 343 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 128/365 (35%), Positives = 189/365 (51%), Gaps = 26/365 (7%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 + ELEE ++G + R Q+++W++ +G+R F M+++S+ +R L Sbjct: 2 DIRQRSLAELEELFKEMG----EAKFRAKQVYEWLWQKGVRSFDAMTNLSKSLREKLAAS 57 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS--RGTLCVSSQVGCS 125 F I + S DGT K R IE+V IP R T+CVS QVGCS Sbjct: 58 FVINGIVEDKVQRSADGTIKSRFRLHD-----GHMIESVLIPVPDDKRFTVCVSCQVGCS 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTC FC TG VRNL A EI QV++ + + G +SNIV M Sbjct: 113 LTCKFCATGRMNRVRNLDAAEIYDQVVMVNQQCLE-------------TFGHPLSNIVYM 159 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 GMGEPL ++NV +S+ + GL S RRIT+ST+G I ++ ++ LA+SLH Sbjct: 160 GMGEPLLAYNNVMESIERLTAPDGLHMSPRRITISTAGIAKMIKKLADDGCKTNLALSLH 219 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A + R+ L+PIN + L +L+DA Y RI++EY+ + +ND DA NL K Sbjct: 220 AADDLKRDELMPINEQNNLAVLMDAL-EYFYRKTHNRISYEYITFQNVNDGLDDAANLAK 278 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 + + P ++N+I +NP YL S++ I F+ ++ + +R RG DI AACGQ Sbjct: 279 LCRRFPVRVNIIEYNPIGDVPYLKSEEDRIDAFARYLREREITVTVRRSRGKDIDAACGQ 338 Query: 365 LKSLS 369 L + Sbjct: 339 LANKE 343 >gi|146299542|ref|YP_001194133.1| radical SAM protein [Flavobacterium johnsoniae UW101] gi|205829760|sp|A5FJ06|RLMN_FLAJO RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|146153960|gb|ABQ04814.1| radical SAM enzyme, Cfr family [Flavobacterium johnsoniae UW101] Length = 349 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 117/368 (31%), Positives = 202/368 (54%), Gaps = 24/368 (6%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 ++K+ + + +++L + + R +Q+++W++ +G F+ M+++++ R Sbjct: 2 QIEKKDIRALSKDQLRDFFVAN----NDKAFRGNQVYEWLWSKGAHSFEDMTNVAKTTRS 57 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 +L ++F I + ++ + S DGT K +R + +E+V IP ++R T CVSSQV Sbjct: 58 MLEENFVINHIKVDTMQRSNDGTVKNAVRLHDGLV-----VESVLIPTETRTTACVSSQV 112 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GCSL C+FC T K +RNL EI Q++ I+ +SNI Sbjct: 113 GCSLDCNFCATARLKRMRNLEPGEIYDQIMA-------------IDKESRLYHNHPLSNI 159 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 V MGMGEPL N++NV K++ + + GL S +RITLSTSG I ++ ++ + LA+ Sbjct: 160 VFMGMGEPLMNYNNVIKAIDMVTSEEGLGMSPKRITLSTSGIPKMIKKMADDDVKFRLAV 219 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH+ ++ R ++P ++ +PL+ L +A Y ++++EYV+ KGIND Sbjct: 220 SLHSAIDETRAKIMPFSKNFPLKDLREAL-EYWYRKTKSKVSYEYVVWKGINDDKASVDA 278 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L+K K +P K+NLI +NP E+ + ++ I+ + + ++ G +R RG DI AA Sbjct: 279 LVKFCKYVPCKVNLIEYNPIDDGEFQQASEESILAYIKALENIGVVVKVRRSRGKDIDAA 338 Query: 362 CGQLKSLS 369 CGQL + Sbjct: 339 CGQLANKE 346 >gi|291458606|ref|ZP_06597996.1| radical SAM enzyme, Cfr family [Oribacterium sp. oral taxon 078 str. F0262] gi|291419139|gb|EFE92858.1| radical SAM enzyme, Cfr family [Oribacterium sp. oral taxon 078 str. F0262] Length = 362 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 131/374 (35%), Positives = 202/374 (54%), Gaps = 43/374 (11%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 + + EL E + ++ R QI+ W++ R F MS++S +R L +HF Sbjct: 4 IRELSLPELREKMREL----SEKPFRAEQIYSWLHERLCASFDEMSNLSLPLREKLREHF 59 Query: 69 SIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 + PE V S DGTRK++ R I IE+V++ + T+C+SSQVGC + Sbjct: 60 RLFLPEPVRILSSSLDGTRKFIFRLEDGHI-----IESVFMRYRHGNTVCISSQVGCRMG 114 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC + + L RNL+A E+L QV + LLG+ +ISN+V+MG Sbjct: 115 CRFCASTLEGLARNLSAAEMLTQVYQIQRLLGE-----------------RISNVVVMGS 157 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 GEPL N++N+ K + + SD GL S+R +T+ST G VP + R+ EE + LA+SLHA Sbjct: 158 GEPLDNYENLTKFVRMISDERGLHLSQRNLTVSTCGLVPELFRLSEEGFQLTLALSLHAP 217 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++++R L+PI +YPL L+ A RHY + R++FEY +++ +ND+ +A L +L Sbjct: 218 NDEIRRRLMPIAARYPLSELLPAVRHYFERTGR-RVSFEYSVVRDLNDTREEAEALSSLL 276 Query: 307 K--------------GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 K G P +NLIP NP + +++ I F ++++G S+ IR Sbjct: 277 KKLRDEGEGSAGQQKGFPLHVNLIPVNPIRERSWERPERRRIEDFQHILEKNGISATIRR 336 Query: 353 PRGLDILAACGQLK 366 G DI ACGQL+ Sbjct: 337 EMGADISGACGQLR 350 >gi|257792840|ref|YP_003183446.1| radical SAM enzyme, Cfr family [Eggerthella lenta DSM 2243] gi|257476737|gb|ACV57057.1| radical SAM enzyme, Cfr family [Eggerthella lenta DSM 2243] Length = 353 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 127/373 (34%), Positives = 194/373 (52%), Gaps = 31/373 (8%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M + K S+ EL + ++G P R Q+ +W+Y R + M+++ + Sbjct: 6 MAAMDK-SIKTYSLPELASVMKELGQPA----FRAQQLQEWLYQRHASSYDEMTNLPGSL 60 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK--SRGTLCV 118 R L + F + P +VD +IS DGTRK+L+ F + +ETV IP + R T+C Sbjct: 61 RATLAERFPLTMPTVVDRQISKDGTRKYLVEF-----DDGIRVETVGIPSRNGDRLTVCF 115 Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 S+Q GC + C+FC TG + RNL EI+ QVL+ + +G++ Sbjct: 116 STQAGCPIACAFCATGQEGFARNLIPGEIVDQVLIVQE-----------------DMGKR 158 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGV 237 ++N V MG GEP N+DN +L I + GL R I++ST G +P + R GE Sbjct: 159 VTNAVGMGQGEPFLNYDNTMAALRILNHKKGLEIGARHISVSTCGILPGLERFSGEPEQF 218 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 LA+SLHA +R++++P +Y L L +A ++Y +N RIT EY+M++G+ND+P Sbjct: 219 TLAVSLHAARQPIRDLIMPNVARYKLPSLKEALQNYVAKTNR-RITLEYIMIEGVNDAPV 277 Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 D L K + +NLIP N G E+ S + I + I + G + +R RG D Sbjct: 278 DLKALQKFCSNLLCHVNLIPINAIEGSEFQPSSPETINLWLSEISKKGTEATLRDSRGSD 337 Query: 358 ILAACGQLKSLSK 370 I ACGQLK+ K Sbjct: 338 ISGACGQLKNTFK 350 >gi|282861394|ref|ZP_06270459.1| radical SAM enzyme, Cfr family [Streptomyces sp. ACTE] gi|282564052|gb|EFB69589.1| radical SAM enzyme, Cfr family [Streptomyces sp. ACTE] Length = 368 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 123/369 (33%), Positives = 182/369 (49%), Gaps = 25/369 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + +E +EA+ IG R Q+ + + R D ++I R L + Sbjct: 20 RHLADLTPDERKEAVAAIG----EKPFRAKQLSQHYFARYAHDPAEWTNIPAGSRDRLAE 75 Query: 67 HFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +V ISCD TRK L + + +E+V + R T+C+SSQ GC Sbjct: 76 AMFPDLMSVV-RHISCDDDTTRKTLWKLHDGTL-----VESVLMRYPYRVTMCISSQAGC 129 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EI+ Q++ G + +P ++SNIV Sbjct: 130 GMNCPFCATGQAGLDRNLSTAEIVHQIV---------DGMRALRDGEVPGGPARLSNIVF 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 MGMGEPL N+ V ++ +D GL S+R IT+ST G VP + R +E LA+ Sbjct: 181 MGMGEPLANYKRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAV 240 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++LR+ LVP+N ++ + ++DA Y S RI+ EY +++ IND Sbjct: 241 SLHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKSGR-RISIEYALIRDINDQAWRGDL 299 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++LKG +NLIP NP PG ++ S +D F E I G +R RG +I A Sbjct: 300 LGRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTVRDTRGQEIDGA 359 Query: 362 CGQLKSLSK 370 CGQL + + Sbjct: 360 CGQLAAAER 368 >gi|146297083|ref|YP_001180854.1| radical SAM protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|205829688|sp|A4XL78|RLMN_CALS8 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|145410659|gb|ABP67663.1| 23S rRNA m(2)A-2503 methyltransferase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 344 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 123/366 (33%), Positives = 192/366 (52%), Gaps = 31/366 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K + +EL++ + + G R +QI++W+Y + D ++I ++R + Sbjct: 2 KRLIKDFTFDELKKWVEETG----EKPFRANQIFEWLYKKNATDVNSFTNIPTQLRKRIE 57 Query: 66 QHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F + +V + DG + K+LL IE+V++P K +C+S+QVGC Sbjct: 58 EEFILNSLRVVKYE--SDGESIKFLLELVD-----GNAIESVFLPYKYGNAICISTQVGC 110 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + ++RNL+A E++ Q++ ++ +KISN+V+ Sbjct: 111 RMKCAFCASTIGGMIRNLSAGEMVDQIVNIENITK-----------------KKISNVVL 153 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243 MG GEP N +NV K + I + G + R IT+ST G V I ++ E V LAISL Sbjct: 154 MGSGEPFDNIENVFKFIDIINSKEGKNIGARHITISTVGIVDGIYKLSEYPKQVNLAISL 213 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +N+LRN LVP+NRKY +E ++ A +Y +N R+TFEY ++ G+NDS A L Sbjct: 214 HAPNNNLRNKLVPMNRKYSIEDILKAVDYYISKTNR-RVTFEYALIDGVNDSIECANELA 272 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 KIL G +NLIP NP G + ++ + F + SG IR G I AACG Sbjct: 273 KILSGKLVHVNLIPVNPVNGRNFKKPPKERVKEFYNVLILSGIQVTIRRELGSSIAAACG 332 Query: 364 QLKSLS 369 QL+S Sbjct: 333 QLRSRH 338 >gi|206601630|gb|EDZ38113.1| Putative radical SAM family protein [Leptospirillum sp. Group II '5-way CG'] Length = 379 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 140/335 (41%), Positives = 201/335 (60%), Gaps = 7/335 (2%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI +WI+ + +++ M+++ E R ++ + + P + DEK S DGTRK+LL Sbjct: 28 YRARQIAQWIFRQNASEWERMNNLPGEDRRRWSEIWDLSLPIVRDEKRSRDGTRKFLLEL 87 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + IE+V IP R TLCVSSQVGC + C FC T L+RNL+ EIL QV Sbjct: 88 SDGAL-----IESVLIPRDDRATLCVSSQVGCGIGCRFCRTAEMGLIRNLSVSEILGQVR 142 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 +A LL + P + + + +++++V MGMGEPL NFD++ +SL++ + G Sbjct: 143 VANRLLAESPVRDMSKETEPAPLLSRVNHLVFMGMGEPLANFDHLVRSLAVLTSPEGFGL 202 Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S RRIT+STSG I +G I V LA+SL A + +LR L+PI+R +P+ ++ ACR Sbjct: 203 SSRRITVSTSGLAGRIRDLGTSGIAVNLAVSLSAPTEELRENLMPISRHHPIRSILSACR 262 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 YP L N +RITFEYV+L G+ND A L ++L +K+NLIPFNP+PG Y D+ Sbjct: 263 AYP-LRNRQRITFEYVLLGGVNDGEGQARELARLLAPFRSKVNLIPFNPYPGSPYHRPDK 321 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + F E + G ++ +RT RG DIL ACGQL Sbjct: 322 DRVRRFQEILLAKGVTATLRTTRGEDILGACGQLA 356 >gi|302537211|ref|ZP_07289553.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp. C] gi|302446106|gb|EFL17922.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp. C] Length = 371 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 126/369 (34%), Positives = 181/369 (49%), Gaps = 25/369 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + E EA+ IG R Q+ + + R D +DI R L Q Sbjct: 23 RHLADLTPAERREAVAAIG----EKPFRAKQLSQHYFARYAHDPAEWTDIPAASREKLQQ 78 Query: 67 HFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +V ISCD TRK L + + +E+V + R T+C+SSQ GC Sbjct: 79 ELLPELMNVV-RHISCDNDTTRKTLWKLHDGTL-----VESVLMRYPDRVTMCISSQAGC 132 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EI+ Q++ G + +P ++SNIV Sbjct: 133 GMNCPFCATGQAGLDRNLSTAEIVHQIV---------DGMRALRDGEVPGGPARLSNIVF 183 Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 MGMGEPL N+ V ++ +D GL S+R IT+ST G VP + R +E LA+ Sbjct: 184 MGMGEPLANYKRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAV 243 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++LR+ LVP+N ++ + ++DA Y S RI+ EY +++ IND Sbjct: 244 SLHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKSGR-RISIEYALIRDINDQAWRGDL 302 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++LKG +NLIP NP PG ++ S +D F E I R G +R RG +I A Sbjct: 303 LGRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIARHGVPVTVRDTRGQEIDGA 362 Query: 362 CGQLKSLSK 370 CGQL + + Sbjct: 363 CGQLAASER 371 >gi|153953998|ref|YP_001394763.1| ribosomal RNA large subunit methyltransferase N [Clostridium kluyveri DSM 555] gi|146346879|gb|EDK33415.1| Hypothetical protein CKL_1373 [Clostridium kluyveri DSM 555] Length = 359 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 131/363 (36%), Positives = 200/363 (55%), Gaps = 29/363 (7%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +++ EELE + + R SQI WIY + DF M++IS+ V L ++ Sbjct: 3 NILNFNIEELENWMK----VNDESKFRASQIMDWIYKKNQYDFNYMTNISKNVIEKLKKN 58 Query: 68 FSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 F I PE+++++ S T K+L +F + I IETV + + ++CVS+QVGC + Sbjct: 59 FYIGIPELIEKQKSKSQDTFKFLYKFQDKNI-----IETVVMKYRHGNSICVSTQVGCRM 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC + +VRNLT+ EIL Q+L ++ + +ISNIV+MG Sbjct: 114 GCKFCASTVNGMVRNLTSGEILAQILKSQ-----------------TEINERISNIVLMG 156 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHA 245 GEPL N+DNV K L++ + L+ +R ITLST G VP I + E + + LAISLH+ Sbjct: 157 SGEPLDNYDNVLKFLNMVNSKYSLNIGQRHITLSTCGIVPKIMDLANENLQITLAISLHS 216 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 N R ++PI KY +E +I AC++Y + R++FEY ++KG+NDS A L+++ Sbjct: 217 PDNFSRRDMMPIANKYSIEEIIYACKYYINKTGR-RVSFEYALVKGVNDSLEFAERLVQL 275 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG+ +NLIP N ++ S + +I F + + + IR G DI AACGQL Sbjct: 276 LKGLLCHVNLIPVNEVKENDFKKSSEDNIKKFYNKLIENKIETTIRREMGSDIDAACGQL 335 Query: 366 KSL 368 + Sbjct: 336 RRR 338 >gi|328885356|emb|CCA58595.1| Ribosomal RNA large subunit methyltransferase N [Streptomyces venezuelae ATCC 10712] Length = 368 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 126/369 (34%), Positives = 180/369 (48%), Gaps = 25/369 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + E +EA+ IG R Q+ + R D +DI R L Sbjct: 20 RHLADLTPAERKEAVAAIG----EKPFRAKQLSTHYFARYAHDPAEWTDIPAASREKLAG 75 Query: 67 HFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +V ISCD TRK L R + +E+V + R T+C+SSQ GC Sbjct: 76 ELLPDLMSVV-RHISCDDDTTRKTLWRLHDGTL-----VESVLMRYPDRVTMCISSQAGC 129 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EI+ Q++ G + +P ++SNIV Sbjct: 130 GMNCPFCATGQAGLDRNLSTAEIVHQIV---------DGMRALRDGEVPGGPARLSNIVF 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 MGMGEPL N+ V ++ +D GL S+R IT+ST G VP + R +E LA+ Sbjct: 181 MGMGEPLANYKRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAV 240 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++LR+ LVP+N ++ + ++DA Y S RI+ EY +++ IND Sbjct: 241 SLHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKSGR-RISIEYALIRDINDQAWRGDL 299 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++LKG +NLIP NP PG ++ S +D F E I R G +R RG +I A Sbjct: 300 LGRLLKGRRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIARHGVPVTVRDTRGQEIDGA 359 Query: 362 CGQLKSLSK 370 CGQL + + Sbjct: 360 CGQLAAAER 368 >gi|332708170|ref|ZP_08428163.1| 23S rRNA m(2)A-2503 methyltransferase [Lyngbya majuscula 3L] gi|332353072|gb|EGJ32619.1| 23S rRNA m(2)A-2503 methyltransferase [Lyngbya majuscula 3L] Length = 351 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 128/362 (35%), Positives = 186/362 (51%), Gaps = 31/362 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L+G EL + + G P R Q+ WIY +G+R +S ++ R+ + Sbjct: 16 PPLLGASLVELTSWIQEQGQPA----YRGRQLHGWIYEKGVRSLSEISVFPKQWRNTVAD 71 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I + + DGT K+LL+ I IETV IP R T+CVSSQVGC + Sbjct: 72 -VPIGRSRLHYRLEAKDGTVKYLLQLSDGQI-----IETVGIPTPKRLTVCVSSQVGCPM 125 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG RNL EI+ QVL R + ++SN+V MG Sbjct: 126 ACDFCATGKGGFTRNLARHEIVDQVLTVREDFQE-----------------RVSNVVFMG 168 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHA 245 MGEPL N + V ++ + L R +T+ST G I ++ ++ V LA+SLHA Sbjct: 169 MGEPLLNTEAVVGAVKSLNQD--LGIGARSLTISTVGIPGRIRQLAQHQLQVTLAVSLHA 226 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + LR L+P + YPL+ L+D CR Y L++ R+TFEY++L G+ND A+ L K Sbjct: 227 SNQQLREQLIPSAKHYPLKALLDECRDYVNLTSR-RVTFEYILLGGLNDCREHAVELAKN 285 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G + +NLIP+NP +Y + + I F E +K+ + +R RGLD AACGQL Sbjct: 286 LRGFQSHVNLIPYNPISEVDYQRPNYRRIQGFVEALKQQHIAVSVRHSRGLDKDAACGQL 345 Query: 366 KS 367 ++ Sbjct: 346 RA 347 >gi|227824650|ref|ZP_03989482.1| ribosomal RNA large subunit methyltransferase N [Acidaminococcus sp. D21] gi|226905149|gb|EEH91067.1| ribosomal RNA large subunit methyltransferase N [Acidaminococcus sp. D21] Length = 352 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 127/376 (33%), Positives = 200/376 (53%), Gaps = 28/376 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K+ ++G+ E++++ L +G+ + R Q+++WIY +G F+ M+++S+E R L Sbjct: 1 MTKKEILGLTLEQMQDEFLALGL----KKFRAEQVFRWIYEKGATTFEEMTNLSKENRSL 56 Query: 64 LNQHFSI--IYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 L +SI +++ S D T K LL +ETV + + C+SS Sbjct: 57 LEGTYSILSGAVKVLRTYDSADRLTHKVLLGLSD-----GASVETVLMHHDYGYSACLSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC++ C+FC +G +RNLTA EIL Q+ V+ G ++S Sbjct: 112 QVGCAMNCTFCASGLHGFMRNLTAGEILAQLYYF--------------DHVLLPKGERVS 157 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VML 239 IV+MG GEP+ N DNV +L + G S R +T+ST G VP I + + + L Sbjct: 158 RIVIMGSGEPMLNLDNVLAALDLMHHDKGQCISYRNMTISTCGIVPGIEEMTRQGRTINL 217 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA + LR+ L+PIN KYP +IDA Y + N R++ +EY++L GIND DA Sbjct: 218 AVSLHAATGALRDRLMPINGKYPFPEVIDAASRYEKM-NGRQVMYEYILLAGINDREEDA 276 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L + L G +NLIP NP P + + +D+ F + +K+ + +R G DI Sbjct: 277 RALAEALSGKECVVNLIPANPVPEKGFRRPEDRDVDRFFQYLKKRHINVTVRKEMGKDIN 336 Query: 360 AACGQLKSLSKRIPKV 375 AACGQL++ + + Sbjct: 337 AACGQLRASQLKEEQA 352 >gi|166363996|ref|YP_001656269.1| hypothetical protein MAE_12550 [Microcystis aeruginosa NIES-843] gi|205829811|sp|B0JT33|RLMN_MICAN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|166086369|dbj|BAG01077.1| hypothetical protein MAE_12550 [Microcystis aeruginosa NIES-843] Length = 337 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 123/360 (34%), Positives = 183/360 (50%), Gaps = 31/360 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+ EEL + + G P R Q+ +W+Y +G+ +S QE R + + Sbjct: 3 LLAKSLEELTDWVKDQGQPA----YRGKQLHQWLYEKGVHSLADISVFPQEWRSKMAD-Y 57 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 I I ++ D TRK+LL+ I IE V IP + R T+CVSSQVGC + C Sbjct: 58 PIGRSLIHYRSVAPDRTRKYLLKLADGLI-----IEAVGIPSEKRLTVCVSSQVGCPMAC 112 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG RNL A EI+ QVL + +++S++V MGMG Sbjct: 113 DFCATGKGGFTRNLKAHEIVDQVLTVQE-----------------DFQQRVSHVVFMGMG 155 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVS 247 EPL N V ++ + +G +R +T+ST G I ++ E + + A+SLHA + Sbjct: 156 EPLLNIPEVVTAIHCLNKDVG--IGQRCLTISTVGLPHKIKQLAEHNLQITFAVSLHASN 213 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 +R L+P Y L LI C+ Y ++ R+TFEY++L G+ND P A L K++K Sbjct: 214 QQVRAKLIPSADHYLLSNLIQDCQEYVQITGR-RVTFEYILLAGVNDLPEHARELAKLVK 272 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 G + +NLIP+NP +Y D+K I F +++ + +R RGL AACGQL+S Sbjct: 273 GFQSHVNLIPYNPIQEVDYQRPDEKRIKAFKTILEQEKVAVTVRYSRGLATDAACGQLRS 332 >gi|315607782|ref|ZP_07882775.1| cfr family radical SAM enzyme [Prevotella buccae ATCC 33574] gi|315250251|gb|EFU30247.1| cfr family radical SAM enzyme [Prevotella buccae ATCC 33574] Length = 358 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 132/383 (34%), Positives = 206/383 (53%), Gaps = 32/383 (8%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN K SL+G+ EL++ ++G+P Q+ KW+Y + ++ M++IS+ Sbjct: 1 MNT--KTSLLGLSLAELKDVAKRLGMPA----FTGGQMAKWLYGQHVKSIDEMTNISKAN 54 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVE-----IETVYIPEKSRGT 115 R L H++I +DE+ S DGT K+L +G E +ETVYIP+K R T Sbjct: 55 REKLAGHYTIGCAAPIDEQRSKDGTVKYLFPVTTTAVGENREAPVKFVETVYIPDKDRAT 114 Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175 LCVS QVGC + C FC TG Q NL+ +IL QV + Sbjct: 115 LCVSCQVGCKMNCLFCQTGKQGFEGNLSVADILNQVYSLPEVD----------------- 157 Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI 235 K++NIV MG GEP+ N DNV ++ I + G ++S +RIT+S+ G + R EE Sbjct: 158 --KLTNIVFMGQGEPMDNLDNVLRATEILTADYGWAWSPKRITVSSVGVKNKLRRFLEES 215 Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 +AIS+H+ + R L+P R +E +++ ++Y S+ RR++FEY++ G+NDS Sbjct: 216 DCHVAISMHSPLPEQRAELMPAQRGMGIEEVVELLKNY-DFSHQRRLSFEYIVFGGVNDS 274 Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 A ++++LKG+ +INLI F+ PG +++K + + + G + IR RG Sbjct: 275 NAHAREIVRLLKGLDCRINLIRFHQIPGVALHGAEEKRMEELRDYLTAHGVFTTIRASRG 334 Query: 356 LDILAACGQLKSLSKRIPKVPRQ 378 DI AACG L S SK+I ++ + Sbjct: 335 EDIFAACGLL-STSKKIEELRSK 356 >gi|268611643|ref|ZP_06145370.1| radical SAM protein [Ruminococcus flavefaciens FD-1] Length = 352 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 124/370 (33%), Positives = 200/370 (54%), Gaps = 30/370 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K ++ + ELE L ++G + R QI++W++V+ + DF M+DIS ++R + Sbjct: 1 MEKIDILSLSLTELENVLTELG----EKKFRAKQIFQWLHVKRVTDFDKMTDISVQLRTV 56 Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L + F I + + SC D T K+L R +ETV + ++CVS+QV Sbjct: 57 LKEKFCINGLFVEKKLESCMDNTVKYLYRLSDGNF-----VETVLMEYNYGHSICVSTQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC + VR+L EIL+Q+ G ++S + Sbjct: 112 GCKMGCRFCASAIAGYVRDLEPSEILMQIYETER-----------------DSGVRVSGV 154 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241 V+MG+GEPL N+DNV + LS+ SD G + S R ++LST G VP I + + +GV L + Sbjct: 155 VLMGIGEPLDNYDNVVRFLSLLSDKNGNNMSLRHVSLSTCGIVPRIYDLAKLRLGVTLCV 214 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH N+ R+ ++P+N KY ++ LI AC+ Y + RITFEY ++ G+N + DA Sbjct: 215 SLHCPDNEGRSKIMPVNNKYDIDSLITACKDYIDATGR-RITFEYAVIDGVNSTDADADK 273 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L +L+GI +NLIP N Y + + + F++ + + G ++ +R G DI AA Sbjct: 274 LADLLRGINCHVNLIPVNKVKERNY-RTARSGVADFAKRLGKRGINATVRRTLGSDIEAA 332 Query: 362 CGQLKSLSKR 371 CGQL+ + + Sbjct: 333 CGQLRRDAAK 342 >gi|253584157|ref|ZP_04861355.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium varium ATCC 27725] gi|251834729|gb|EES63292.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium varium ATCC 27725] Length = 350 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 134/371 (36%), Positives = 204/371 (54%), Gaps = 28/371 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + ++ELEE ++ +G+ + QI+ W++ + +RD ++++S + R LL Sbjct: 3 EKINLLNLNQQELEELVISLGM----KKFYGKQIFNWLHQKIVRDINEITNLSLKDRELL 58 Query: 65 NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQV 122 + I + ++ ++IS D T K+L + IETV + K R TLC+SSQV Sbjct: 59 AEKTYIPFLNLLKQQISKIDKTEKFLFKLED-----GNTIETVLLRHKDKRNTLCISSQV 113 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C+FC TG VRNL EI+ QV + G I+NI Sbjct: 114 GCPVKCAFCATGQDGFVRNLDVNEIINQVYTVER--------------RLVKQGSNINNI 159 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLAI 241 V MGMGEPL N NV K+L I S+ G++ SKR+IT+STSG VPNI + + E++ + LAI Sbjct: 160 VFMGMGEPLLNLSNVLKALDILSNENGINISKRKITISTSGIVPNIEKILLEKLPIELAI 219 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH+ N R++++P+NR YPLE L + Y + RI+FEY+M+ N S DA Sbjct: 220 SLHSAINAKRDMIIPVNRSYPLEDLYAILQEYQRQTKR-RISFEYIMINEFNVSDVDANA 278 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLDILA 360 L + +NLIP+NP G E+ +K I F +K + +R +G DI Sbjct: 279 LADFVHEFDHVVNLIPYNPVAGTEFERPSEKKIEKFFTFLKDVRKVNVTLRREKGTDIDG 338 Query: 361 ACGQLKSLSKR 371 ACGQL+ + + Sbjct: 339 ACGQLRQKAPK 349 >gi|288924769|ref|ZP_06418706.1| radical SAM enzyme, Cfr family [Prevotella buccae D17] gi|288338556|gb|EFC76905.1| radical SAM enzyme, Cfr family [Prevotella buccae D17] Length = 358 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 131/383 (34%), Positives = 205/383 (53%), Gaps = 32/383 (8%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN K SL+G+ EL++ ++G+P Q+ KW+Y + ++ M++IS+ Sbjct: 1 MNT--KTSLLGLSLAELKDVAKRLGMPA----FTGGQMAKWLYGQHVKSIDEMTNISKAN 54 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVE-----IETVYIPEKSRGT 115 R L H++I +DE+ S DGT K+L +G E +ETVYIP+K R T Sbjct: 55 REKLAGHYTIGCASPIDEQRSKDGTVKYLFPVTTTAVGENREAPVMFVETVYIPDKDRAT 114 Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175 LCVS QVGC + C FC TG Q NL+ +IL QV + Sbjct: 115 LCVSCQVGCKMNCLFCQTGKQGFEGNLSVADILNQVYSLPEVDN---------------- 158 Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI 235 ++NIV MG GEP+ N DNV ++ I + G ++S +RIT+S+ G + R EE Sbjct: 159 ---LTNIVFMGQGEPMDNLDNVLRATEILTADYGWAWSPKRITVSSVGVKNKLRRFLEES 215 Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 +AIS+H+ + R L+P R +E +++ ++Y S+ RR++FEY++ G+NDS Sbjct: 216 DCHVAISMHSPLPEQRAELMPAQRGMGIEEVVELLKNY-DFSHQRRLSFEYIVFGGVNDS 274 Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 A ++++LKG+ +INLI F+ PG +++K + + + G + IR RG Sbjct: 275 NAHAREIVRLLKGLDCRINLIRFHQIPGVALHGAEEKRMEELRDYLTAHGVFTTIRASRG 334 Query: 356 LDILAACGQLKSLSKRIPKVPRQ 378 DI AACG L S SK+I ++ + Sbjct: 335 EDIFAACGLL-STSKKIEELRSK 356 >gi|225847963|ref|YP_002728126.1| ribosomal RNA large subunit methyltransferase N [Sulfurihydrogenibium azorense Az-Fu1] gi|225644008|gb|ACN99058.1| radical SAM enzyme, Cfr family [Sulfurihydrogenibium azorense Az-Fu1] Length = 353 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 138/369 (37%), Positives = 207/369 (56%), Gaps = 29/369 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L + +ELE +++ G P + R QI KW+Y + + F M+D+S+E+R L + Sbjct: 2 INLKNLNFKELENFVVENGWP----KFRAKQIAKWLYNKKVESFDQMTDLSKEIRQTLKE 57 Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I +++ + S DG+ K+L + IETV I EK+ TLCVS+QVGC+ Sbjct: 58 KCEINSLKLLTYQQSKIDGSIKFLWQLKD-----GNTIETVLINEKNHKTLCVSTQVGCA 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FCYT L+RNL EI+ Q + + LGD +ISNIV M Sbjct: 113 VGCKFCYTTKDGLIRNLETAEIVDQYINVQRFLGD-------------EEENRISNIVYM 159 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE---IGVMLAIS 242 GMGEPL N+DNVKKS+ I + S R+IT+S+SG + I R+ E+ V LA+S Sbjct: 160 GMGEPLANYDNVKKSVQIFTHPDMCKLSHRKITISSSGILHQIKRMFEDKDFPQVKLAVS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 L+A R+ L+PI++ LE L+D R P L RIT EYV++K +ND+ DA L Sbjct: 220 LNASHQSQRSYLMPISQTNTLEDLMDLLRKLP-LKPGWRITLEYVLIKNVNDTVEDAKRL 278 Query: 303 IKILKGIPA--KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 + ++K K+NLIPFNP+PG ++ ++ ++ F + + + ++ IR +G DI A Sbjct: 279 VNLIKKDKHRFKVNLIPFNPYPGSDFERPEESRVLAFEKVLWDNNIATFIRWSKGRDIDA 338 Query: 361 ACGQLKSLS 369 ACGQL+ Sbjct: 339 ACGQLRKKE 347 >gi|163784065|ref|ZP_02179018.1| hypothetical protein HG1285_12252 [Hydrogenivirga sp. 128-5-R1-1] gi|159880664|gb|EDP74215.1| hypothetical protein HG1285_12252 [Hydrogenivirga sp. 128-5-R1-1] Length = 355 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 128/372 (34%), Positives = 206/372 (55%), Gaps = 31/372 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K +L + +ELE + + + R QI KW+Y + + + M+D+S+++R+ Sbjct: 1 MEKVNLKDLNFKELENWVKD----KNWHKFRAKQISKWLYNKKVSSYDEMTDLSKDIRNY 56 Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L ++ ++V + S DG+ K+L R IE+V+IPE+ T+CVS+QV Sbjct: 57 LKENTEFESLKLVSYEKSQIDGSIKFLWRLKD-----GNTIESVFIPERDHNTICVSTQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC++ C+FCYT L+RNLT EI+ Q L + +G+ +ISN+ Sbjct: 112 GCAVGCTFCYTTKDGLIRNLTTAEIIDQYLQVQRFVGN---------------ENRISNV 156 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV---GEEIGVML 239 V MGMGEPL N+DNV+K++ I +D L S R+IT+S+SG + I ++ E V L Sbjct: 157 VFMGMGEPLANYDNVRKAVQIMTDKNMLDLSNRKITISSSGIIAQILKMYNDPEFPQVRL 216 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SL+A +R ++PI++ +E L+ P + RI EYV++K +ND+ DA Sbjct: 217 AVSLNASDQKVRESIMPISKTNTIEDLMKTLNSLPFKT-GYRIMLEYVLIKDVNDTEEDA 275 Query: 300 LNLIKIL--KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 L+K++ K+NLIPFNP+ +Y D+K + F + + S+ IR +G D Sbjct: 276 KKLVKLIGKNKKRYKVNLIPFNPFEESDYKRPDEKRVEKFQKILWEHNISAFIRWSKGRD 335 Query: 358 ILAACGQLKSLS 369 I AACGQL+ Sbjct: 336 ISAACGQLRKKE 347 >gi|320008274|gb|ADW03124.1| radical SAM enzyme, Cfr family [Streptomyces flavogriseus ATCC 33331] Length = 368 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 120/368 (32%), Positives = 180/368 (48%), Gaps = 23/368 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + +E +EA+ G R Q+ + + R D ++I R L + Sbjct: 20 RHLADLTPDERKEAVAATG----EKPFRAKQLSQHYFTRYAHDPAEWTNIPAASRDKLAE 75 Query: 67 -HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + D TRK L + + +E+V + R T+C+SSQ GC Sbjct: 76 AMFPELMSVLRHISCDDDTTRKTLWKLHDGTL-----VESVLMRYPDRVTMCISSQAGCG 130 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG L RNL+ EI+ Q++ G + +P ++SNIV M Sbjct: 131 MNCPFCATGQAGLDRNLSTAEIVHQIV---------DGMRALRDGEVPGGPARLSNIVFM 181 Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 GMGEPL N+ V ++ +D GL S+R IT+ST G VP + R +E LA+S Sbjct: 182 GMGEPLANYKRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAVS 241 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA ++LR+ LVP+N ++ + ++DA Y S RI+ EY +++ IND L Sbjct: 242 LHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKSGR-RISIEYALIRDINDQAWRGDRL 300 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LKG +NLIP NP PG ++ S +D F E I R G +R RG +I AC Sbjct: 301 GRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIARHGVPVTVRDTRGQEIDGAC 360 Query: 363 GQLKSLSK 370 GQL + + Sbjct: 361 GQLAASER 368 >gi|91215990|ref|ZP_01252959.1| radical SAM enzyme, Cfr family protein [Psychroflexus torquis ATCC 700755] gi|91185967|gb|EAS72341.1| radical SAM enzyme, Cfr family protein [Psychroflexus torquis ATCC 700755] Length = 348 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 125/364 (34%), Positives = 197/364 (54%), Gaps = 24/364 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ + + ++EL E + G R SQ++ W++ + +F+ M+++S+E R +L Sbjct: 5 KKDIRALSKQELNEFFVSQG----DKSFRGSQVYNWLWNKATYNFEDMTNLSKETRQMLE 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +F I + E+ + + S DGT K ++ +E+V IP SR T CVSSQVGCS Sbjct: 61 DNFVINHIEVDEMQRSKDGTIKNAVKLHD-----GFTVESVLIPTLSRTTACVSSQVGCS 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T K +RNL A+EI QV+ I+ G +SNIV M Sbjct: 116 LDCKFCATAKLKRMRNLNADEIFDQVVA-------------IDKESRLYNGIPLSNIVFM 162 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 GMGEPL N+ NV KS+ + GL S +RITLSTSG I ++ ++ + LA+SLH Sbjct: 163 GMGEPLMNYKNVLKSVEKITSPDGLGMSPKRITLSTSGVPKMIKKLADDDVKFHLAVSLH 222 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 + +++R ++P N K+PL L D+ ++ + +T+EY++ KGIND+ D L+K Sbjct: 223 SAIDEIRTQIMPFNAKFPLADLKDSLLYWYEKTGKS-VTYEYIVWKGINDTQEDISALVK 281 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 + IP K+N+I +NP ++ + ++ + + +R RG DI AACGQ Sbjct: 282 FCQLIPCKVNIIEYNPIDDGQFQQGSDDAVAKHVNALEANHITVTLRHSRGKDIDAACGQ 341 Query: 365 LKSL 368 L + Sbjct: 342 LANK 345 >gi|325268958|ref|ZP_08135579.1| cfr family radical SAM enzyme [Prevotella multiformis DSM 16608] gi|324988579|gb|EGC20541.1| cfr family radical SAM enzyme [Prevotella multiformis DSM 16608] Length = 350 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 128/370 (34%), Positives = 195/370 (52%), Gaps = 29/370 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K++L+GM EL+E +G+P QI KW+Y + +R M++IS+ R L Sbjct: 5 KKNLLGMTLGELKEVAKSLGMPA----FTGGQIAKWLYTQHVRSIDEMTNISKANREKLA 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +++ + D + S DGT K+L + +ETVYIPE R TLCVSSQVGC Sbjct: 61 AAYAVGCKDPTDAQYSKDGTVKYLFPTESGKF-----VETVYIPEDDRATLCVSSQVGCK 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q +LTA +IL QV K++NIV M Sbjct: 116 MNCLFCQTGKQGFEGSLTATDILNQVYSLPERD-------------------KLTNIVFM 156 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 G GEP+ N DNV ++ I + G +S +RIT+S+ G + R EE +AIS+H+ Sbjct: 157 GQGEPMDNLDNVLRATEILTAGFGYGWSPKRITVSSVGVKGKLKRFLEESDCHVAISMHS 216 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ R+ L+P R +E ++ +Y S+ RR++FEY++ KG+NDS A ++++ Sbjct: 217 PLHEQRSELMPAERGMSIESIVGLLANY-DFSHQRRLSFEYIVFKGVNDSEAHAKAIVRL 275 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG+ +INLI F+P P D + + F + + G + IR RG DI AACG L Sbjct: 276 LKGLDCRINLIRFHPIPNTPLQGVDDRKMEEFRNYLTQHGVFTTIRASRGQDIFAACGLL 335 Query: 366 KSLSKRIPKV 375 + ++ + Sbjct: 336 STAKEKEERK 345 >gi|313205950|ref|YP_004045127.1| 23S rRNA m(2)a-2503 methyltransferase [Riemerella anatipestifer DSM 15868] gi|312445266|gb|ADQ81621.1| 23S rRNA m(2)A-2503 methyltransferase [Riemerella anatipestifer DSM 15868] gi|315022263|gb|EFT35291.1| radical SAM enzyme, Cfr family protein [Riemerella anatipestifer RA-YM] gi|325336610|gb|ADZ12884.1| Predicted Fe-S-cluster redox enzyme [Riemerella anatipestifer RA-GD] Length = 345 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 126/366 (34%), Positives = 197/366 (53%), Gaps = 24/366 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + + + +EL++ + IG R Q++ W++ + + M+++S+ +R + Q Sbjct: 2 KDIRTLSLDELKDYFISIG----EKPFRAKQVYDWLWSKNGHSIEEMTNLSKNLRERIAQ 57 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 F I ++ + S DGT K ++ + +E+V IP +R T CVSSQVGCSL Sbjct: 58 DFVIKPVKVDLLQKSKDGTIKNGVKLHDGLM-----VESVLIPTDTRTTACVSSQVGCSL 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC T K +RNL EI+ QV L I+ R +SNIV MG Sbjct: 113 NCEFCATARLKRMRNLEVAEIVDQVAL-------------IDQQSKAYFDRPLSNIVFMG 159 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 MGEP+ N+ NV +++ ++ GL S RRIT+STSG I + +E + V LA+SLH+ Sbjct: 160 MGEPMMNYKNVVEAIRKITEPEGLGMSPRRITVSTSGIPKMIKMLADENLKVKLALSLHS 219 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 RN ++P + K+PL ++++ +++ + + IT EY + KGIND+ D LIK Sbjct: 220 AIESKRNEIMPFSTKFPLTDIMESLQYWYEKTGSI-ITLEYCIWKGINDTDEDIKALIKF 278 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 K +P K+NLI +N +Y S+ K + E ++R G + IR RG DI AACGQL Sbjct: 279 CKKVPTKVNLIEYNSIGDGKYDRSNPKATQNYVEQLERHGITVMIRRSRGGDIDAACGQL 338 Query: 366 KSLSKR 371 + S + Sbjct: 339 ANKSTQ 344 >gi|297156855|gb|ADI06567.1| ribosomal RNA large subunit methyltransferase N [Streptomyces bingchenggensis BCW-1] Length = 368 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 123/369 (33%), Positives = 180/369 (48%), Gaps = 25/369 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + E EA+ +G R Q+ + + R D +DI R L Sbjct: 20 RHLADLSPAERREAVAALG----EKPFRAGQVSRHYFARYSHDPAQWTDIPAAAREKLAA 75 Query: 67 HFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +V ISCD TRK L R + +E+V + R T+C+SSQ GC Sbjct: 76 GLLPDLMSVV-RHISCDDDTTRKTLWRLFDGTL-----VESVLMRYPDRVTMCISSQAGC 129 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EI+ Q++ G + IP ++SNIV Sbjct: 130 GMNCPFCATGQAGLDRNLSTAEIVHQIV---------DGMRALRDGEIPGGPARLSNIVF 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 MGMGEPL N++ V ++ +D GL S+R IT+ST G VP + R +E LA+ Sbjct: 181 MGMGEPLANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAV 240 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA + LR+ LVP+N ++ + ++DA Y S R++ EY +++ IND A Sbjct: 241 SLHAPDDGLRDTLVPVNTRWKVREVLDAAWEYAETSGR-RVSIEYALIRDINDQAWRADL 299 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++LKG +NLIP NP PG ++ S +D F ++ G +R RG +I A Sbjct: 300 LGRLLKGRRVHVNLIPLNPTPGSKWTASRPEDEKAFVAALEAHGVPVTVRDTRGQEIDGA 359 Query: 362 CGQLKSLSK 370 CGQL + + Sbjct: 360 CGQLAATER 368 >gi|239944638|ref|ZP_04696575.1| hypothetical protein SrosN15_26832 [Streptomyces roseosporus NRRL 15998] gi|239991102|ref|ZP_04711766.1| hypothetical protein SrosN1_27614 [Streptomyces roseosporus NRRL 11379] gi|291448102|ref|ZP_06587492.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291351049|gb|EFE77953.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 368 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 120/368 (32%), Positives = 178/368 (48%), Gaps = 23/368 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + E +EA+ G R Q+ + + R D ++I R L + Sbjct: 20 RHLADLTPAERKEAVAATG----EKPFRAQQLSQHYFARYAHDPAEWTNIPAASREKLAE 75 Query: 67 H-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + I D TRK L + + +E+V + R T+C+SSQ GC Sbjct: 76 ALFPELMSVIRHISCDDDTTRKTLWKLHDGTL-----VESVLMRYPERVTMCISSQAGCG 130 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG L RNL+ EI+ Q++ G + +P ++SNIV M Sbjct: 131 MNCPFCATGQAGLDRNLSTAEIVHQIV---------DGMRALRDGEVPGGPARLSNIVFM 181 Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 GMGEPL N+ V ++ +D GL S+R IT+ST G VP + R +E LA+S Sbjct: 182 GMGEPLANYKRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAVS 241 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA ++LR+ LVP+N ++ + ++DA Y S RI+ EY +++ IND L Sbjct: 242 LHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKSGR-RISIEYALIRDINDQAWRGDLL 300 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LKG +NLIP NP PG ++ S +D F E I G +R RG +I AC Sbjct: 301 GRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTVRDTRGQEIDGAC 360 Query: 363 GQLKSLSK 370 GQL + + Sbjct: 361 GQLAASER 368 >gi|255038476|ref|YP_003089097.1| radical SAM enzyme, Cfr family [Dyadobacter fermentans DSM 18053] gi|254951232|gb|ACT95932.1| radical SAM enzyme, Cfr family [Dyadobacter fermentans DSM 18053] Length = 350 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 127/371 (34%), Positives = 194/371 (52%), Gaps = 25/371 (6%) Query: 1 MNFLK-KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59 M ++ K+ + + ++++ + + G R QI++WI+ + F M+++S Sbjct: 1 MTTIQQKQDIRKLNVDQIKTWMTEHG----EKAFRAKQIYEWIWKKSAHSFDEMTNLSLA 56 Query: 60 VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119 R L+N+HF I ++ ++ S DGT K + + +E V IP R T CVS Sbjct: 57 TRELMNEHFVIHSLDVAKKQHSNDGTVKSAFKLFDGNL-----VEGVLIPAADRMTACVS 111 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 SQVGCSLTC FC TG RNL A EI QV+ + + Sbjct: 112 SQVGCSLTCKFCATGYMDRKRNLEAGEIYDQVVAIAR-------------QAEATFNAPL 158 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVM 238 +NIV MGMGEPL N+ NV KS+ + GL+ S +RIT+ST+G I ++ + E+ Sbjct: 159 TNIVYMGMGEPLLNYANVLKSIEYITSPKGLNMSPKRITVSTAGIAKMITKLADDEVRFR 218 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLHA ++ RN ++PIN L+ L DA Y RITFEY++ NDS +D Sbjct: 219 LALSLHAANDKKRNQIMPINESNSLDNLADALN-YFYKKTGNRITFEYIVFNNFNDSLQD 277 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L + K +PA++N+I +NP ++ ++ + F+ ++ G S +R RG DI Sbjct: 278 AKELWEFCKRVPARVNIIEYNPIAEADFKNTEADRLDKFAAFLEDRGVSVHVRRSRGKDI 337 Query: 359 LAACGQLKSLS 369 AACGQL + Sbjct: 338 DAACGQLANKE 348 >gi|254442505|ref|ZP_05055981.1| radical SAM enzyme, Cfr family [Verrucomicrobiae bacterium DG1235] gi|198256813|gb|EDY81121.1| radical SAM enzyme, Cfr family [Verrucomicrobiae bacterium DG1235] Length = 368 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 131/380 (34%), Positives = 197/380 (51%), Gaps = 27/380 (7%) Query: 1 MNFL-KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59 M +L +K + G E L+ ++G P + R Q+ +W+Y + + M+++ + Sbjct: 1 MKYLPEKPPIYGETLESLQARFAELGEP----KFRAKQVLEWLYKKRAETWDAMTNLPKP 56 Query: 60 VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP--------EK 111 +R L F I + V K S D T K LL+ G IETV I E Sbjct: 57 LREKLAAAFEIAPSKRVLAKESSDETEKLLLQM-----GDNSMIETVVIRAPQIGVGQEN 111 Query: 112 SRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMV 171 SR T+C+S+QVGC+ C FC +G R+L+ EI+ Q++ + ED Sbjct: 112 SRKTICISTQVGCAYGCKFCASGLLGWKRDLSVGEIVSQLIHVCHM-------EDATTER 164 Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231 NIV+MGMGEP+ N+ N+ +L I + GL+F RRIT+STSG VP I + Sbjct: 165 ASEEIASFDNIVVMGMGEPMANYKNLLPALRILNADWGLNFGARRITISTSGVVPRILEL 224 Query: 232 GEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 +E LA+SLH +N++R+ ++P+NRKYPLE L+ A + Y IT E+++++ Sbjct: 225 ADEREQFRLAVSLHGATNEVRDQIMPVNRKYPLEKLLPAIQKYAQTKGRM-ITLEFILIE 283 Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI 350 IND+ A L KI + A +NLIP+N G ++ F +K G S+ I Sbjct: 284 EINDTLEQADALTKIALDLKAHVNLIPYNTVDGLDWKRPSITRQDVFYNRLKNRGVSATI 343 Query: 351 RTPRGLDILAACGQLKSLSK 370 R +G DI AACGQLK ++ Sbjct: 344 RREKGHDIAAACGQLKLKTE 363 >gi|149277498|ref|ZP_01883639.1| hypothetical protein PBAL39_04903 [Pedobacter sp. BAL39] gi|149231731|gb|EDM37109.1| hypothetical protein PBAL39_04903 [Pedobacter sp. BAL39] Length = 349 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 132/371 (35%), Positives = 199/371 (53%), Gaps = 24/371 (6%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M KK + + +L+E + + R Q+++W++ + R F MS++S+++ Sbjct: 1 MLTTKKTDIRSLELPQLQEHFKSM----QEPSYRAKQVYQWLWEKSARTFDEMSNLSKDL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L++H++I E+ + + S D T K R I +E V IP R T CVSS Sbjct: 57 RKKLDEHYAINVVEVNNSQFSNDHTIKNAFRLYDGNI-----VEGVLIPMDDRMTACVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGCSLTC FC TG RNL A+EI QV+L I+ + ++ Sbjct: 112 QVGCSLTCKFCATGYMDRKRNLNADEIYDQVVL-------------IDQQAKKNYNAPLT 158 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVML 239 NIV MGMGEPL N+ NV KS+ + GL+ S +RIT+ST+G I ++G++ L Sbjct: 159 NIVYMGMGEPLLNYANVMKSIERITAPDGLNMSYKRITVSTAGISKMIKKLGDDGAKFNL 218 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA ++ RN ++PIN L+ L +A ++Y + IT+EY++ ND DA Sbjct: 219 ALSLHAANDKKRNEIMPINEHNSLKALEEALKYYFSKT-KNPITYEYIVFNDFNDEIEDA 277 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 + L K K +P K+NLI +NP +++ + I FS +K G ++ IR RG DI Sbjct: 278 MELAKFCKHVPCKVNLIEYNPIQFADFINAQGDKIDAFSNYLKSQGVNTNIRRSRGKDID 337 Query: 360 AACGQLKSLSK 370 AACGQL + Sbjct: 338 AACGQLAVKEQ 348 >gi|326798558|ref|YP_004316377.1| ribosomal RNA large subunit methyltransferase N [Sphingobacterium sp. 21] gi|326549322|gb|ADZ77707.1| Ribosomal RNA large subunit methyltransferase N [Sphingobacterium sp. 21] Length = 379 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 130/371 (35%), Positives = 201/371 (54%), Gaps = 24/371 (6%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 N KK + + E+L+E+LL +G R QI++W++++ DF M+++S+++R Sbjct: 28 NMGKKVDIRSLSLEQLKESLLALG----EQSFRAKQIFEWLWMKSCVDFDNMTNLSKKLR 83 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L ++F I I + S D T K + I IE V IP R T CVSSQ Sbjct: 84 DSLKENFIINAVRIDKSQYSADKTIKSTFKLFDNNI-----IEGVLIPTPDRMTACVSSQ 138 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGCSLTC FC TG RNL A+EI QV+L + + +SN Sbjct: 139 VGCSLTCKFCATGYMDRKRNLNADEIYDQVVLINKQAEE-------------NYSIPLSN 185 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240 IV MGMGEPL N+ NV KS+ + GL+ + +RIT+ST+G I ++G++ + LA Sbjct: 186 IVYMGMGEPLLNYANVLKSIERITAPDGLNMAAKRITVSTAGIAKMIKKLGDDQVKFNLA 245 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++ RN ++PIN + L+ L +A ++Y + +T+EY++ ND DA Sbjct: 246 LSLHAANDAKRNEIMPINEQNSLKALAEALKYYFAKT-KNPVTYEYIVFNNFNDELEDAA 304 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L K +P K+N+I +NP ++ ++ I F+ +++ G ++ +R RG DI A Sbjct: 305 ELASFCKHLPCKVNIIEYNPIAFADFENAEGDKIDRFAAFLRKRGITTNVRRSRGKDIDA 364 Query: 361 ACGQLKSLSKR 371 ACGQL K+ Sbjct: 365 ACGQLAVKEKQ 375 >gi|83589757|ref|YP_429766.1| hypothetical protein Moth_0906 [Moorella thermoacetica ATCC 39073] gi|123752954|sp|Q2RK16|RLMN_MOOTA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|83572671|gb|ABC19223.1| 23S rRNA m(2)A-2503 methyltransferase [Moorella thermoacetica ATCC 39073] Length = 354 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 149/372 (40%), Positives = 210/372 (56%), Gaps = 27/372 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + L G++ +ELEE +++G R QI++W++ R + + MSD+ + R L Sbjct: 4 RIDLRGLLPQELEELAVRLG----EAPYRGRQIFRWLHARRAKGIEVMSDLPRAFRERLA 59 Query: 66 QHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKS---RGTLCVSSQ 121 + +++ ++ DG TRK LL +G IE V + K R T C+SSQ Sbjct: 60 LVAELPPVRVLNRLVAADGLTRKLLL-----GLGDGNSIECVLMIYKDGRRRNTACLSSQ 114 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC++ CSFC TG L RNLTA EI+LQ L + L + G G +ISN Sbjct: 115 VGCAMGCSFCATGQGGLQRNLTASEIILQALALGAELAEGEG------------GNRISN 162 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240 IV MGMGEPL N++ V K + I D G S RRITLST G VP I R+ E + LA Sbjct: 163 IVFMGMGEPLNNYEAVMKGVRIFEDPSGWGISHRRITLSTCGIVPGIERLAREKPPLELA 222 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHAV+N+LR+ L+PINR+YPLE LI ACR Y ++ R+TFEY ++ G+ND DA Sbjct: 223 VSLHAVTNELRDKLMPINRRYPLEELIPACRRYAEITGR-RVTFEYALIAGVNDRREDAR 281 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L ++L+ + A +N+IP NP G + F ++ +G + IR RG DI A Sbjct: 282 GLSRLLRDMLAFVNIIPLNPVAGSGFKGVPPAAARAFVALLQEAGLEAAIRDSRGQDIAA 341 Query: 361 ACGQLKSLSKRI 372 ACGQL+ S+ + Sbjct: 342 ACGQLRFASREV 353 >gi|311898630|dbj|BAJ31038.1| hypothetical protein KSE_52620 [Kitasatospora setae KM-6054] Length = 366 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 117/367 (31%), Positives = 185/367 (50%), Gaps = 25/367 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + E +EA+ ++G R Q+ + R D + +DI R L + Sbjct: 19 RHLADLSPAERKEAVAELG----EQPFRAKQLSNHYFGRMSADPESWTDIPAASRTKLTE 74 Query: 67 HFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +V +SCD TRK L + + +E+V + R T+C+SSQ GC Sbjct: 75 ALLPELMSVV-RHVSCDDDATRKTLWKLFDGTL-----VESVLMRYPDRVTMCISSQAGC 128 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EI+ Q+ G D+ +P ++SN+V Sbjct: 129 GMNCPFCATGQAGLTRNLSTAEIVEQI---------ASGMRDLRTGAVPGGEARLSNVVF 179 Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 MGMGEPL N++ V ++ +D G S+R IT+ST G VP + R +E + LA+ Sbjct: 180 MGMGEPLANYNRVLSAIRRLTDPSPDGFGLSQRGITVSTVGLVPAMHRFADEGLSCRLAL 239 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++LR+ LVP+N ++ ++ ++DA +Y S R++ EY ++K IND A Sbjct: 240 SLHAPDDELRDELVPVNTRWKVDEVLDAAWNYAEKSGR-RVSIEYALIKDINDQAWRADL 298 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++++ +NLIP NP PG ++ S +D F ++ G + +R RG +I A Sbjct: 299 LGRLIRNRRVHVNLIPLNPTPGSKWTASRPEDEREFVRRLQAHGVPTTVRDTRGQEIDGA 358 Query: 362 CGQLKSL 368 CGQL + Sbjct: 359 CGQLAAA 365 >gi|219682208|ref|YP_002468592.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219621941|gb|ACL30097.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311086023|gb|ADP66105.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086597|gb|ADP66678.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087180|gb|ADP67260.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087708|gb|ADP67787.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 363 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 157/364 (43%), Positives = 211/364 (57%), Gaps = 24/364 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K +L+ + R+ L+ L+ +G T Q+ WIY DF M +IS + R Sbjct: 12 ISKINLLDLNRQNLKYFLISLG----AKNFCTEQVMSWIYNYYCDDFNKMLNISIKTRKK 67 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L + I E ++EKIS DGT KW+ +IETVY+PEK R TLCVSSQ+G Sbjct: 68 LYEKSYIFASEFIEEKISYDGTIKWI------TDINNQKIETVYMPEKKRSTLCVSSQIG 121 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 CSL C FC TG + RNL EI+ Q+ A L + ++ + I+NIV Sbjct: 122 CSLKCHFCATGQEGFQRNLKVSEIIAQIWQANKRLKE------------KNIKKNITNIV 169 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MGMGEPL N NV +L+I D G SKRR+TLSTSG VP + ++ I V LAISL Sbjct: 170 FMGMGEPLLNLKNVVSALTIILDEYGFGLSKRRVTLSTSGIVPALDKLRNMIDVSLAISL 229 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALN 301 HA ++ +RNI++PINRKY + ++ + Y SNA R IT EYVML INDS A Sbjct: 230 HAPNDFIRNIIMPINRKYNISSVLSSALKYFKYSNANRGGITIEYVMLDRINDSNEHARQ 289 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L +L IP+KINLIP+N + G +LCS+ I F+ +++ G+++ IR RG DI AA Sbjct: 290 LSVLLSKIPSKINLIPWNSFSGPSFLCSNTDRINMFANILRKKGFTTTIRKNRGEDINAA 349 Query: 362 CGQL 365 CGQL Sbjct: 350 CGQL 353 >gi|196228869|ref|ZP_03127735.1| radical SAM enzyme, Cfr family [Chthoniobacter flavus Ellin428] gi|196227150|gb|EDY21654.1| radical SAM enzyme, Cfr family [Chthoniobacter flavus Ellin428] Length = 359 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 129/370 (34%), Positives = 195/370 (52%), Gaps = 36/370 (9%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 + + +E+ E L +G P R Q+ +WIY + ++ F MSD+ +R L Sbjct: 10 IKSLTLDEVSERLRTLGQPG----YRAKQVVQWIYGKRVKSFAEMSDLPAGLRQQLAAEL 65 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK--------SRGTLCVSS 120 S E V S D T K+L R + IE+V IP R T+C+S+ Sbjct: 66 SFSGLEPVRTLGSKDTTLKYLFRLDDGAL-----IESVLIPASPALYGEASDRRTICIST 120 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC+ C FC +G RNL EI+ QVL L G+ KI+ Sbjct: 121 QVGCAYGCKFCASGLDGWSRNLQPGEIVDQVLRVEELSGE-----------------KIN 163 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239 NIV MGMGEP+ NF N+ K+++I + G+ R IT+STSG P I + ++ + V L Sbjct: 164 NIVFMGMGEPMANFTNLMKAITIINAPWGIGLGARHITISTSGLAPQIKLLADQPLQVRL 223 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 AISLH +N++R ++P+NRKYPLE+L++AC +Y +TFEY++++ +ND P DA Sbjct: 224 AISLHGATNEVREQIMPVNRKYPLEVLLEACAYYTQRKKQW-LTFEYILIEEVNDRPEDA 282 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L+K+ + + AK+N IP+N G ++ + F ++ + IR +G DI Sbjct: 283 AALVKVARQVKAKVNCIPYNKVEGLDWTRPSEARQDAFMAVLEAGRIPATIRREKGHDIA 342 Query: 360 AACGQLKSLS 369 AACGQL+ + Sbjct: 343 AACGQLRRQT 352 >gi|67921029|ref|ZP_00514548.1| Conserved hypothetical protein 48 [Crocosphaera watsonii WH 8501] gi|67857146|gb|EAM52386.1| Conserved hypothetical protein 48 [Crocosphaera watsonii WH 8501] Length = 341 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 127/367 (34%), Positives = 192/367 (52%), Gaps = 31/367 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 L +E+L+G +EL + + G P R Q+ +W+Y +G+R +S + R Sbjct: 3 LTQETLLGKSVDELTTWIKQQGQPG----YRGKQLHQWLYQKGVRSLTEISVFPKAFRED 58 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + I I I+ D TRK+LL I IETV IP R T+CVSSQVG Sbjct: 59 FKD-YPIGRSNINHCTIAPDKTRKYLLSLADGLI-----IETVGIPTAKRLTVCVSSQVG 112 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG + RNL++ EI+ Q+L + ++S++V Sbjct: 113 CPMNCDFCATGKGEYDRNLSSAEIVDQILTVQE-----------------DFQERVSHVV 155 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242 MGMGEPL N V K++ I + +G +R +T+ST G I + ++ V A+S Sbjct: 156 FMGMGEPLLNTKEVVKAVKILNQDVG--IGQRSLTISTVGIPKKILELAHHQLQVTFAVS 213 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA + LR L+P + YPL L+ CR Y ++ R++FEY++L G+ND P A+ L Sbjct: 214 LHAANQKLREQLIPSAKFYPLPKLLADCRKYVEITGR-RVSFEYILLGGVNDLPEQAIEL 272 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K LKG + +NLIP+NP +Y S+ + I F ++ + +R RGL+ AAC Sbjct: 273 AKCLKGFQSHVNLIPYNPIEEVDYQRSNAESINIFKTILEEKNIAVSVRYSRGLEANAAC 332 Query: 363 GQLKSLS 369 GQL+++S Sbjct: 333 GQLRAMS 339 >gi|326776285|ref|ZP_08235550.1| radical SAM enzyme, Cfr family [Streptomyces cf. griseus XylebKG-1] gi|326656618|gb|EGE41464.1| radical SAM enzyme, Cfr family [Streptomyces cf. griseus XylebKG-1] Length = 368 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 120/369 (32%), Positives = 181/369 (49%), Gaps = 25/369 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + + E +EA+ G R Q+ + + R D ++I R L + Sbjct: 20 RHIADLTPAERKEAVAATG----EKPFRAQQLSQHYFARYAHDPAEWTNIPAGSREKLAE 75 Query: 67 HFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 ++ ISCD TRK L + + +E+V + R T+C+SSQ GC Sbjct: 76 ALFPDLMSVM-RHISCDDDTTRKTLWKLHDGTL-----VESVLMRYPDRVTMCISSQAGC 129 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EI+ Q++ G + +P ++SNIV Sbjct: 130 GMNCPFCATGQAGLDRNLSTAEIVHQIV---------DGMRALRDGEVPGGPARLSNIVF 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 MGMGEPL N++ V ++ +D GL S+R IT+ST G VP + R +E LA+ Sbjct: 181 MGMGEPLANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAV 240 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++LR+ LVP+N ++ + ++DA Y S RI+ EY +++ IND Sbjct: 241 SLHAPDDELRDTLVPVNTRWNVREVLDAAWEYADKSGR-RISIEYALIRDINDQAWRGDR 299 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++LKG +NLIP NP PG ++ S +D F E I G +R RG +I A Sbjct: 300 LGRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTVRDTRGQEIDGA 359 Query: 362 CGQLKSLSK 370 CGQL + + Sbjct: 360 CGQLAAAER 368 >gi|218295831|ref|ZP_03496611.1| radical SAM enzyme, Cfr family [Thermus aquaticus Y51MC23] gi|218243569|gb|EED10097.1| radical SAM enzyme, Cfr family [Thermus aquaticus Y51MC23] Length = 349 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 135/341 (39%), Positives = 192/341 (56%), Gaps = 21/341 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R +QI W++ RG+ DF M+D+ + +R L + + + ++V+ S DG+ K+L Sbjct: 17 YRKAQIAHWVFARGVLDFAEMTDLPKGLREALAREWRVSEFQLVEAYPSKDGSVKYLFTL 76 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + E VY+P K+R T+C+SS VGC C+FC TG RNLTA EIL Q+L Sbjct: 77 LD-----GKKTEAVYMPYKNRKTVCLSSMVGCPAGCTFCATGALGFGRNLTAAEILSQLL 131 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 G P R+I N+V+MGMGEPL N NV K++ + L+ Sbjct: 132 AIAHHQGLSP--------------REIRNVVLMGMGEPLLNLTNVLKAIRVMLHPKALAM 177 Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S RRITLST G I R+ EE +GV LA+SLHA ++ R ++P +YP+ ++ A R Sbjct: 178 SPRRITLSTVGIPRGILRLAEEDVGVRLALSLHAPDDETRRKIIPTAHRYPIAEIMAAVR 237 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 Y + R+TFEY +LKG+ND A L K+LKGI A +NLIPFNPW + + Sbjct: 238 RYYERTKR-RVTFEYTLLKGLNDHLWQARLLAKLLKGISAHVNLIPFNPWENAPVEGTPK 296 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRI 372 I+ F+E ++R G S+ IR RG D+ AACGQL + + Sbjct: 297 AGILAFAEELRRLGVSTSIRWSRGRDVGAACGQLALKAPKA 337 >gi|317133046|ref|YP_004092360.1| radical SAM enzyme, Cfr family [Ethanoligenens harbinense YUAN-3] gi|315471025|gb|ADU27629.1| radical SAM enzyme, Cfr family [Ethanoligenens harbinense YUAN-3] Length = 342 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 123/368 (33%), Positives = 191/368 (51%), Gaps = 30/368 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K L M EEL +G P + Q++ W++ RG+ F M+D S+ R +L Sbjct: 3 EKRDLKSMDIEELGAFFRALGAPA----YKAKQVFAWLH-RGVGSFDEMTDQSKAFRAVL 57 Query: 65 NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 +H I + V S DGT K+L +ETV + ++C+S+Q G Sbjct: 58 EEHALITRVQTVRRLESVLDGTVKYLFALSD-----GECVETVMMRYSYGDSVCISTQAG 112 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC + L R+L E+L Q+L GRK+S++V Sbjct: 113 CRMGCGFCASTLGGLHRSLAPSEMLDQILAV-----------------TKDTGRKVSHVV 155 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEPL N++NV K L + S GL+ S R ++LST G V I R+ EE + + L++S Sbjct: 156 LMGIGEPLDNYENVVKFLHLLSCKGGLNMSLRHVSLSTCGLVDGIRRLMEEKLQLTLSVS 215 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA ++ +R+ ++P+NRK+ + L+ ACR Y + RI+FEY M+ G+ND+P A L Sbjct: 216 LHAPNDAIRSSIMPVNRKWGVNTLLAACRDYIEATGR-RISFEYAMIDGVNDTPACAKEL 274 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 L+G+ +NLIP NP Y S + + F + G + +R G DI A+C Sbjct: 275 AARLRGMLCHVNLIPANPVKERSYQKSPAEKVERFRRLLAGFGLTVTVRRTLGADIQASC 334 Query: 363 GQLKSLSK 370 GQL+ ++ Sbjct: 335 GQLRQAAR 342 >gi|224023722|ref|ZP_03642088.1| hypothetical protein BACCOPRO_00438 [Bacteroides coprophilus DSM 18228] gi|224016944|gb|EEF74956.1| hypothetical protein BACCOPRO_00438 [Bacteroides coprophilus DSM 18228] Length = 350 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 125/369 (33%), Positives = 194/369 (52%), Gaps = 29/369 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K L+G +EL + +L +G+P + QI W+Y R + M+++S + R L Sbjct: 5 KAPLLGKTLDELTQIVLDLGMP----KFTAGQIASWLYGRKVASIDEMTNLSVKNRERLK 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + + V E S DGT K+L R P +E+VYIP+ R TLCVSSQVGC Sbjct: 61 ECYEVGATAPVHEMRSVDGTVKYLFRTP-----EGDYVESVYIPDADRATLCVSSQVGCK 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q +LTA +IL Q+ ++N+V M Sbjct: 116 MNCKFCMTGKQGYTNSLTAAQILNQIYSIPERD-------------------TLTNVVFM 156 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEP N D V ++L I + S G ++S +RIT+S+ G + R +E LAISLH+ Sbjct: 157 GMGEPFDNLDEVLRALEILTASYGYAWSPKRITVSSVGLRKGLRRFLDESDCHLAISLHS 216 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 R L+P + + + ++D R Y S RR++FEY++ KG+NDS A L+++ Sbjct: 217 PFPAQRQELMPAEKAFSIVEIVDILRQY-DFSKQRRLSFEYIVFKGVNDSLIYAKELVRL 275 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G+ ++NLI F+ P + +D + ++ F + + + G + IR RG DI AACG L Sbjct: 276 LRGLDCRMNLIRFHAIPNVDLEGADMETMLAFRDYLTQHGLFATIRASRGEDIFAACGML 335 Query: 366 KSLSKRIPK 374 + ++ K Sbjct: 336 STAKQQANK 344 >gi|291276281|ref|YP_003516053.1| radical-SAM-proteins [Helicobacter mustelae 12198] gi|290963475|emb|CBG39305.1| Putative radical-SAM-proteins [Helicobacter mustelae 12198] Length = 379 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 139/380 (36%), Positives = 216/380 (56%), Gaps = 42/380 (11%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +++ +LE L R QI+ W+YV+ +DF M ++ + +++ L++ Sbjct: 17 QNIYDYTLRQLEGLL--------EPSFRAKQIYHWLYVQYAQDFDVMHNLPKALKNKLSK 68 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-------------EKSR 113 + I + EI+ + SCDGT+K+L + E+V I SR Sbjct: 69 DYRIKHLEIMKVETSCDGTKKYLFKTLD-----GHTFESVLIKMREEKIDCEGRIIHGSR 123 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 T CVSSQ+GC + C+FC+T VRNL++ EI+ QVL + P Sbjct: 124 YTFCVSSQIGCKVGCAFCFTAKGGFVRNLSSGEIVEQVLQLKKDNSLAP----------- 172 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233 K NIV MGMGEPL N +NV +++ I S+ GLS S RR T+STSG P IA++GE Sbjct: 173 ---EKRVNIVFMGMGEPLNNLENVAQAIRIMSELDGLSISPRRQTISTSGIAPKIAKLGE 229 Query: 234 -EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 ++GV LAISLHAV ++LR+ L+P+N+ Y ++ +IDA R +P + +++ FEY+++K + Sbjct: 230 LDLGVQLAISLHAVDDELRSRLIPMNKAYNIKSIIDAVRQFP-VDTRKKVMFEYLVIKDV 288 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 ND + A L+K+L GI AK+NLI FNP G E+ + + + F++ + + G + IR Sbjct: 289 NDDLKSAKILLKLLDGIRAKVNLILFNPHEGSEFQRPEMEQVKKFADFLVQRGLLATIRE 348 Query: 353 PRGLDILAACGQLKSLSKRI 372 RG+DI AACGQL+ ++ Sbjct: 349 SRGIDISAACGQLREKETKV 368 >gi|304437062|ref|ZP_07397025.1| cfr family radical SAM enzyme [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370013|gb|EFM23675.1| cfr family radical SAM enzyme [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 346 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 126/363 (34%), Positives = 193/363 (53%), Gaps = 26/363 (7%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 ++ G M+ EL +AL + GIP R R QI +W+Y RG F M ++ + +R L + Sbjct: 2 NIFGWMKTELADALREEGIP----RFRADQIIRWMYQRGAVSFDVMDNLPKLLRAQLAER 57 Query: 68 FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 FSI P++ S DG T K L F ETV + ++CVS+Q GC + Sbjct: 58 FSIERPQVGARLTSADGATIKLLYAF-----ADGQTAETVLMRHPYGNSVCVSTQAGCRM 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC + L RNLT EI QV+ L G ++ IV+MG Sbjct: 113 GCAFCASTLHGLARNLTVGEIAAQVIGMADYLRQ--------------EGARVDTIVVMG 158 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 GEP+ N+DNV +L + + S R +TLSTSG VP I R+ EE + + L+ISLHA Sbjct: 159 SGEPMENYDNVIGALRLLHAEETIGLSYRGMTLSTSGIVPGILRLAEEGLPISLSISLHA 218 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + +LR+ L+P+NR YP+ ++ A Y + R+T+EY++++ +ND R+A L ++ Sbjct: 219 PTEELRSSLMPVNRMYPMAEVLRAAELYAARTKR-RVTYEYILIRDVNDGVREAEQLARL 277 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G A +NLIP +P ++ ++ F ++ ++ +R G DI AACGQL Sbjct: 278 LRGQLASVNLIPIDPVAERHLFRPPRETVLRFQRILEAHHVTATVRREMGTDIQAACGQL 337 Query: 366 KSL 368 +S Sbjct: 338 RSR 340 >gi|182435651|ref|YP_001823370.1| hypothetical protein SGR_1858 [Streptomyces griseus subsp. griseus NBRC 13350] gi|205829903|sp|B1VYT2|RLMN_STRGG RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|178464167|dbj|BAG18687.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 368 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 119/369 (32%), Positives = 181/369 (49%), Gaps = 25/369 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + + E +EA+ G R Q+ + + R D ++I R L + Sbjct: 20 RHIADLTPAERKEAVAATG----EKPFRAQQLSQHYFARYAHDPAEWTNIPAGSREKLAE 75 Query: 67 HFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 ++ ISCD TRK L + + +E+V + R T+C+SSQ GC Sbjct: 76 ALFPDLMSVM-RHISCDDDTTRKTLWKLHDGTL-----VESVLMRYPDRVTMCISSQAGC 129 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EI+ Q++ G + +P ++SNIV Sbjct: 130 GMNCPFCATGQAGLDRNLSTAEIVHQIV---------DGMRALRDGEVPGGPARLSNIVF 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 MGMGEPL N++ V ++ +D GL S+R IT+ST G VP + R +E LA+ Sbjct: 181 MGMGEPLANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAMLRFADEGFKCRLAV 240 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++LR+ LVP+N ++ + ++DA Y S RI+ EY +++ IND Sbjct: 241 SLHAPDDELRDTLVPVNTRWNVREVLDAAWEYADKSGR-RISIEYALIRDINDQAWRGDR 299 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++LKG +NLIP NP PG ++ S +D F E + G +R RG +I A Sbjct: 300 LGRLLKGKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAVAAHGVPVTVRDTRGQEIDGA 359 Query: 362 CGQLKSLSK 370 CGQL + + Sbjct: 360 CGQLAAAER 368 >gi|319955823|ref|YP_004167086.1| 23S rRNA m(2)a-2503 methyltransferase [Nitratifractor salsuginis DSM 16511] gi|319418227|gb|ADV45337.1| 23S rRNA m(2)A-2503 methyltransferase [Nitratifractor salsuginis DSM 16511] Length = 370 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 138/379 (36%), Positives = 208/379 (54%), Gaps = 42/379 (11%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 N +K + +EEL + R QI+ WIY + F+ M+++ + +R Sbjct: 10 NDSEKRIIHDYTKEELGREI--------QPAFRAKQIYNWIYHKHADSFEEMANLPKTMR 61 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYI------------- 108 L + + + E+V ++ S DG+ K+L R +E V + Sbjct: 62 QELAKKYELHPLEMVSKQESRDGSIKYLFRLHD-----GHTVEAVLLLMKEAQYHEDGTL 116 Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168 R T+C+SSQVGC + C+FC T +RNL+A EI+ QVL E + Sbjct: 117 KHHRRYTVCISSQVGCKVGCAFCLTAKGGFIRNLSAGEIVDQVL------------EIYK 164 Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228 IPS R N+V MGMGEPL N DNV K++ I +D G+S S R T+STSG I Sbjct: 165 DQNIPSNHR--VNLVYMGMGEPLDNLDNVAKAVKIFADMDGMSISPNRQTISTSGLSSKI 222 Query: 229 ARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 ++G ++GV LAISLHAV ++LR L+PIN+ Y + +I+A R++P ++ +++ FEY+ Sbjct: 223 EKLGRMDLGVNLAISLHAVDDELREKLMPINKAYNIASIIEAVRNFP-VNQRKKVLFEYL 281 Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYS 347 ++K +ND A L+K+L G+ AK+NLI FNP+PG E+ + +D+ F E + G Sbjct: 282 VIKHVNDDIASAKKLVKLLNGLKAKVNLIYFNPYPGTEFERPEPEDMKRFQEYLLSKGVL 341 Query: 348 SPIRTPRGLDILAACGQLK 366 IR +GLDI AACGQL+ Sbjct: 342 CTIRESKGLDISAACGQLR 360 >gi|310659155|ref|YP_003936876.1| fe-s-cluster redox enzyme [Clostridium sticklandii DSM 519] gi|308825933|emb|CBH21971.1| putative Fe-S-cluster redox enzyme [Clostridium sticklandii] Length = 341 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 130/363 (35%), Positives = 195/363 (53%), Gaps = 30/363 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K + + ELEE ++K+G + R QI+ + V+GI F + +IS+ ++ L Sbjct: 2 KSDALSLTFSELEEEIVKLG----EQKFRAKQIYPKL-VQGISSFDEIGNISKVLKEKLK 56 Query: 66 QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + I + S DGTRK+LL+ + I IE V + K ++C+SSQVGC Sbjct: 57 ERLYISKVSVYKVLTSELDGTRKYLLQLDDKNI-----IEAVLMRYKHGLSICISSQVGC 111 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + CSFC + LVRNLTA E++ Q+L ++ + + +ISN+VM Sbjct: 112 LMGCSFCASTIDGLVRNLTAGEMIGQILAVQNDVKE-----------------RISNVVM 154 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243 MG GEPL NFDN+ K L I L+ R IT+ST G VP + + + + LAISL Sbjct: 155 MGSGEPLDNFDNLIKFLDIVHQEDSLNIGYRHITISTCGVVPKVNELAKLGYPINLAISL 214 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H +++ R I++P+ YP++ +I A + Y + RR+TFEY ++KG+NDS DA L Sbjct: 215 HETTHEKRKIIMPVENAYPIDSVIKAAKDYAN-TTKRRVTFEYALIKGVNDSNEDANRLS 273 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+LKG+ +NLIP N Y D+ I F +K + + +R G DI ACG Sbjct: 274 KLLKGMLCHVNLIPVNTVEERTYKRPDKAAINAFLSVLKSNHIEATVRREMGKDINGACG 333 Query: 364 QLK 366 QL+ Sbjct: 334 QLR 336 >gi|254457165|ref|ZP_05070593.1| radical SAM enzyme, Cfr family [Campylobacterales bacterium GD 1] gi|207085957|gb|EDZ63241.1| radical SAM enzyme, Cfr family [Campylobacterales bacterium GD 1] Length = 359 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 132/379 (34%), Positives = 211/379 (55%), Gaps = 42/379 (11%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SL+ ++EL+ + R +QI+ W+Y + F M ++ + +R L Sbjct: 5 KPSLLDFTKKELQTLIK--------PGFRVNQIFGWLYHQYAESFDDMKNVPKALREELA 56 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS------------- 112 + + + IV++++S DGT K+LL+ +E V++ K Sbjct: 57 EKYVVNPLTIVNKEVSTDGTIKYLLQMQD-----GKTMEAVWLKMKDTQLDENAEVIQEA 111 Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172 + T+CVS+QVGC + CSFC T R+LTA EI+ QV+ + Sbjct: 112 KYTICVSTQVGCKVGCSFCLTAKGGFTRDLTAGEIVAQVVTLKCDNDH------------ 159 Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232 + NIV MGMGEPL N DN+ K++ I + GL S +R T+STSG I ++G Sbjct: 160 --KHNRKINIVYMGMGEPLDNLDNLAKAIEIFKEDDGLCISGKRQTVSTSGLSNKIDQLG 217 Query: 233 E-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291 + ++GV +AISLHAV ++LR L+P+N+ + + +I+A + +P + +R+ FEY+++KG Sbjct: 218 KMDLGVHIAISLHAVDDELRTELIPMNKAHNINSIIEAVKRFP-IDTRKRVMFEYLVIKG 276 Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351 ND A L+K+L GI AK+NLI FNP+PG +Y ++D+VTF++ + + G IR Sbjct: 277 KNDDLGSAKKLVKLLHGIKAKVNLIYFNPYPGTDYDRPSKEDMVTFADYLIKHGLLCTIR 336 Query: 352 TPRGLDILAACGQLKSLSK 370 +G+DI AACGQLK ++ Sbjct: 337 DSKGIDISAACGQLKEKTE 355 >gi|154250366|ref|YP_001411191.1| ribosomal RNA large subunit methyltransferase N [Fervidobacterium nodosum Rt17-B1] gi|205829758|sp|A7HNQ1|RLMN_FERNB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|154154302|gb|ABS61534.1| radical SAM enzyme, Cfr family [Fervidobacterium nodosum Rt17-B1] Length = 348 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 132/368 (35%), Positives = 201/368 (54%), Gaps = 32/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 +++++ EEL + KIG+ + R Q+W WIY + DF M+++S+E R+ L+ Sbjct: 2 RKNILDFSYEELVDEFSKIGLE----KFRVDQVWDWIYKKHEFDFDKMTNLSKEHRNTLS 57 Query: 66 QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I PE++D +IS D T K+L + IE+V + R T C+S+QVGC Sbjct: 58 ERFYIYVPELLDMQISQIDKTTKFLWKLEDDNT-----IESVLLFHPDRVTACISTQVGC 112 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 C+FC TG VRNL+A EI+ Q++ I NIV Sbjct: 113 PAKCAFCATGQSGFVRNLSAGEIVSQIIAMEKHRK-----------------VNIGNIVY 155 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISL 243 MGMGEPL N+ V KS+ + + G + S RRI++ST G I + +++ V LAISL Sbjct: 156 MGMGEPLLNYKEVVKSVKMLNHKKGKNISMRRISISTVGIPEKIVELAQDLPEVKLAISL 215 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +N R+I+VP+N+KY +E +I + + Y ++ R+TFEY++++ ND DA L Sbjct: 216 HAPNNYKRDIIVPMNKKYSVEEIIQSAKEYQKIT-KNRVTFEYILIREFNDFVDDAEKLA 274 Query: 304 KILKGIPAKINLIPFNPWP---GCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 ++LKG+ A +NLIP NP P ++ I F E + + + IR +G DI A Sbjct: 275 ELLKGMGAYVNLIPVNPVPSSGELKFERPHHWAIERFKEVLDKHNIENEIRREKGTDIDA 334 Query: 361 ACGQLKSL 368 ACGQL+ Sbjct: 335 ACGQLRRR 342 >gi|255533736|ref|YP_003094108.1| radical SAM enzyme, Cfr family [Pedobacter heparinus DSM 2366] gi|255346720|gb|ACU06046.1| radical SAM enzyme, Cfr family [Pedobacter heparinus DSM 2366] Length = 348 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 128/370 (34%), Positives = 197/370 (53%), Gaps = 24/370 (6%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M K + + +L++ + + P R Q+++W++ + R F MS++ +++ Sbjct: 1 MPATNKIDIRSLDLSQLQQHFIAMQEPA----YRAKQVYQWLWEKSARSFAEMSNLPKDL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L+ ++I E+ +IS D T K R I +E V IP R T CVSS Sbjct: 57 RAKLDAQYAINVVEVNKSQISNDHTIKNAFRLYDGNI-----VEGVLIPMDDRMTACVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGCSLTC FC TG RNL A+EI QV+L I+ + ++ Sbjct: 112 QVGCSLTCKFCATGYMDRKRNLNADEIYDQVVL-------------IDQQAKKNYNAPLT 158 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239 NIV MGMGEPL N+ NV KS+ + GL+ S +RIT+ST+G I ++G++ + L Sbjct: 159 NIVYMGMGEPLLNYANVLKSIERITAPDGLNMSYKRITVSTAGISKMIKKLGDDGVKFNL 218 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA ++ RN ++PIN L+ L ++ ++Y + +T+EY++ ND DA Sbjct: 219 ALSLHAANDKKRNEIMPINEHNSLKALAESLKYYFAKT-KNPVTYEYIVFNHFNDEIEDA 277 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 + L K K +P K+NLI +NP +++ ++ I FS +K G ++ IR RG DI Sbjct: 278 MELAKFCKHVPCKVNLIEYNPIQFADFINAEGDKIDAFSNYLKSQGITTNIRRSRGKDID 337 Query: 360 AACGQLKSLS 369 AACGQL Sbjct: 338 AACGQLAVKE 347 >gi|310644715|ref|YP_003949474.1| ribosomal RNA large subunit methyltransferase n [Paenibacillus polymyxa SC2] gi|309249666|gb|ADO59233.1| Ribosomal RNA large subunit methyltransferase N [Paenibacillus polymyxa SC2] Length = 365 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 132/385 (34%), Positives = 211/385 (54%), Gaps = 26/385 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +KKES+ G+ ++L LL+ G + R Q+W +Y + I DF M+++ + L Sbjct: 1 MKKESIYGLTLDQLTAWLLEHGYKKS----RALQVWDALYRKRITDFAAMTEVHENCTRL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L ++FSI E ++ S DGT K+L R + IETV + K ++CV++QVG Sbjct: 57 LAENFSIETLEEHVKQQSADGTVKFLFRLQDGNL-----IETVLMRHKFGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ CSFC +G K R+L++ EI+ Q++ + L G ++S++V Sbjct: 112 CNIGCSFCASGLLKKSRDLSSGEIVGQIMKVQLYLDQ------------ERPGDRVSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242 +MG+GEP NF N+ + + D GL+ +R IT+STSG I + ++ V LAIS Sbjct: 160 VMGIGEPFDNFVNLSDFIRVIKDHKGLAIGQRHITVSTSGLADKIIEFADSDLHVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N++R ++ INR P+E L+ A +Y +N RIT EY++LK +ND AL L Sbjct: 220 LHAPNNEIRTRIMKINRAIPIEKLMQAIDYYLDKTNR-RITLEYILLKDVNDGKEHALEL 278 Query: 303 IKIL--KGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 +++ + A +NLIP+NP +Y S+ + I F + +K+ G S +R G+DI Sbjct: 279 AELVGHRRNLANVNLIPYNPVDEHSQYQRSESESITGFYDVLKKQGISCSVRLEHGVDID 338 Query: 360 AACGQLKSLSKRIPKVPRQEMQITG 384 AACGQL+S R + + Sbjct: 339 AACGQLRSKQIRKDANSSRNAEREA 363 >gi|205829720|sp|Q6MDD0|RLMN2_PARUW RecName: Full=Ribosomal RNA large subunit methyltransferase N 2; AltName: Full=23S rRNA m2A2503 methyltransferase 2 Length = 358 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 131/362 (36%), Positives = 187/362 (51%), Gaps = 26/362 (7%) Query: 11 GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70 ++L E L G QI WIY +G+ + MS++SQ +R L +H + Sbjct: 5 DFDHQKLVEWLKAHG----EKEFHAKQILSWIYQKGVLSWDKMSNLSQSLREKLAKHIRL 60 Query: 71 IYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129 E+V S D T K+L R + +E+V I R T+CVSSQVGC C+ Sbjct: 61 PVLELVRYTESIDQETIKFLWRLRDGNL-----VESVLILSGIRRTVCVSSQVGCPAKCA 115 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 FC +G Q RNL EI+ Q+L + + S G K+S++V MGMGE Sbjct: 116 FCASGQQGFFRNLRPTEIIEQILQINAW--------------LSSKGEKVSHVVYMGMGE 161 Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248 PL N+++V S+ + S + S+RRIT+ST G V I R+ +E + V L +SLHA + Sbjct: 162 PLKNYESVVASIRVLSHPDFCNISQRRITVSTVGVVEGIKRLSKEGLKVNLVLSLHAPNQ 221 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 +R ++P RKYPLE ++++ Y + ITFEY +L GIND P A L +LKG Sbjct: 222 HIRKKIIPYARKYPLEEILESMDEYAQKTKRD-ITFEYTLLAGINDHPDHAHELAHLLKG 280 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 +NLIP+NP PG ++K I F + S + R +G DI AACGQL Sbjct: 281 KQCTVNLIPYNPIPGLRLKRPEKKAIKQFRSVLYGSHIVNTCRYTKGDDIGAACGQLALQ 340 Query: 369 SK 370 + Sbjct: 341 ER 342 >gi|302334811|ref|YP_003800018.1| 23S rRNA m(2)A-2503 methyltransferase [Olsenella uli DSM 7084] gi|301318651|gb|ADK67138.1| 23S rRNA m(2)A-2503 methyltransferase [Olsenella uli DSM 7084] Length = 359 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 118/371 (31%), Positives = 184/371 (49%), Gaps = 28/371 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 ++ L M +L E L +G P R QI +W++ + + F MS++ + +R L Sbjct: 16 QRRDLRAMSHGQLLELLGDLGQPG----FRAKQIEEWVWEKNVSSFDDMSNLPKSLRAHL 71 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +Q S+ P V + S DG+RK+LLR+ V +E V +P +++ +C S+Q GC Sbjct: 72 SQACSLGGPREVGRQQSSDGSRKYLLRYED-----GVSVECVGMPTRNKLAVCASTQAGC 126 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +++C+FC TG L R+LTA EI QV+ AR +++++V+ Sbjct: 127 AMSCAFCATGAAGLTRSLTAGEIYEQVMHARD-----------------DFNARVTSVVL 169 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243 MG GEP N+D +L + G R +T+ST G +P I R E LA+SL Sbjct: 170 MGQGEPFMNYDATLGALRRLNSPEGAGIGARHLTVSTCGIIPMIKRFAGEPEQFTLAVSL 229 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ R++L+P RKY L L + Y + R T+EY ++KG+NDS + L Sbjct: 230 HSAVQRTRDMLMPGVRKYSLLHLYEIMEEYVDKTGR-RPTYEYALIKGVNDSEDEMGALC 288 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +G A +NLI N + S + F + G + IR RG DI AACG Sbjct: 289 DFCRGNLAHVNLIRLNDVKDSPFQPSSDRRAEEFVRRLGAVGVDATIRNSRGSDIDAACG 348 Query: 364 QLKSLSKRIPK 374 QL+ +R+ + Sbjct: 349 QLRQEMERLSR 359 >gi|16331844|ref|NP_442572.1| hypothetical protein sll0098 [Synechocystis sp. PCC 6803] gi|3287936|sp|Q55880|RLMN_SYNY3 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|1208474|dbj|BAA10642.1| sll0098 [Synechocystis sp. PCC 6803] Length = 350 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 127/354 (35%), Positives = 184/354 (51%), Gaps = 31/354 (8%) Query: 18 EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD 77 + + G P R QI +W+Y +G R M+D+ + R N H+ I I Sbjct: 17 TDWVQTTGQPA----YRGKQIHQWLYQKGARSLTAMTDLPKVWREK-NVHYPIGRSVIDH 71 Query: 78 EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137 ++ D TRK+LLR I IETV IP R T+CVSSQVGC++ C+FC TG Sbjct: 72 CAVAPDHTRKYLLRLADGLI-----IETVGIPSSKRLTVCVSSQVGCAMDCNFCATGKGG 126 Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197 +RNL + EI+ QVL + + ++SN+V MGMGEPL N V Sbjct: 127 FIRNLESHEIVDQVLTVQEEFHE-----------------RVSNVVFMGMGEPLLNLPQV 169 Query: 198 KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVP 256 K++ + +G +R +T+ST G I ++ + + V A+SLHA + LR L+P Sbjct: 170 VKAVECLNQVVG--IGQRALTISTVGLPGKIRQLADRHLQVTFAVSLHAPNQTLRQSLIP 227 Query: 257 INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLI 316 R YPLE L+ CR Y + RR+TFEYV+L G+ND P A L + L+G +NLI Sbjct: 228 SARHYPLEQLLADCRAYVE-TTGRRVTFEYVLLAGVNDQPVHAEELAQKLRGFQTHVNLI 286 Query: 317 PFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 P+NP +Y + I F++ + + +R RG+ AACGQL++ K Sbjct: 287 PYNPISEVDYQRPTEAQINQFAQVLSDHRIAVSVRYSRGVQADAACGQLRASRK 340 >gi|237738438|ref|ZP_04568919.1| radical SAM domain-containing protein [Fusobacterium mortiferum ATCC 9817] gi|229420318|gb|EEO35365.1| radical SAM domain-containing protein [Fusobacterium mortiferum ATCC 9817] Length = 356 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 135/374 (36%), Positives = 204/374 (54%), Gaps = 28/374 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + ++ELEE ++ +G+ + Q++ W++ + +RD ++++S + R LL Sbjct: 7 EKINLLNLNQQELEEFVVSLGM----KKFYGKQLFNWLHKKIVRDLNEVTNLSLKDRELL 62 Query: 65 NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQV 122 + I + ++ +IS D T K+L + IETV + K R TLC+SSQV Sbjct: 63 TEKAYIPFLNLLKHQISKIDKTEKFLFQLED-----GNTIETVLLRHKDKRNTLCISSQV 117 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC++ C+FC TG VR+L EI+ QV + G ++NI Sbjct: 118 GCAVKCAFCATGQGGFVRDLNVSEIINQVYTIER--------------RLVKQGTNLNNI 163 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLAI 241 V MGMGEPL N NV K+L I S+ G++ SKR+IT+STSG VPNI + + E++ V LAI Sbjct: 164 VFMGMGEPLLNLTNVLKALEILSNENGINISKRKITISTSGIVPNIEKILLEKVPVELAI 223 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH+ N+ R+ ++PINR+YPLE L + Y + RITFEY+++ N S DA Sbjct: 224 SLHSAINEKRDEIIPINRRYPLEDLHAVLQEYQRQTKR-RITFEYILINNFNVSEGDANA 282 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLDILA 360 L + +NLIP NP G E K I F ++ + IR +G DI Sbjct: 283 LADFVHDFDHVVNLIPCNPVEGTEMTRPSDKKIERFVNFLQNVRKVNVTIRREKGTDIDG 342 Query: 361 ACGQLKSLSKRIPK 374 ACGQL+ +K+ K Sbjct: 343 ACGQLRQKNKKPTK 356 >gi|271963404|ref|YP_003337600.1| radical SAM protein [Streptosporangium roseum DSM 43021] gi|270506579|gb|ACZ84857.1| radical SAM protein [Streptosporangium roseum DSM 43021] Length = 374 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 117/367 (31%), Positives = 177/367 (48%), Gaps = 23/367 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + E + ++G R Q+ + + + D + M+D+ R Sbjct: 27 RHLADLTMAERRAVVAELG----EKPFRADQLSRHYFEKLNGDPELMTDLPATAREKFAA 82 Query: 67 HFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 V E + GT RK L R + +E+V + R T+CVSSQ GC Sbjct: 83 ALFPKLLTSVREMTTDAGTTRKTLWRLFDGAL-----VESVLMRYTDRTTMCVSSQAGCG 137 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG L RN+T EI+ QV+ G + +P ++SN+V M Sbjct: 138 MNCPFCATGQAGLTRNMTTAEIVEQVVA---------GARALAAGEVPGGPGRVSNVVFM 188 Query: 186 GMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 GMGEPL N+ V ++ GL S R +T+ST G VP I ++ E + V LA+S Sbjct: 189 GMGEPLANYKAVIGAVRRMVEPSPDGLGISARGVTVSTVGLVPAIGKLAAEGLPVTLALS 248 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA ++LR+ LVPIN ++ + ++DA +Y + RR++ EY ++K IND A L Sbjct: 249 LHAPDDELRDTLVPINTRWKVAEVLDAAWNYAA-TTKRRVSIEYALIKDINDQEWRADLL 307 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K++K +NLIP NP PG ++ S +D F ++ G +R RG +I AC Sbjct: 308 GKLIKNKLVHVNLIPLNPTPGSKWTASRPEDERAFVRRLEFHGVPVTVRDTRGREIDGAC 367 Query: 363 GQLKSLS 369 GQL + Sbjct: 368 GQLAAAE 374 >gi|186684082|ref|YP_001867278.1| ribosomal RNA large subunit methyltransferase N [Nostoc punctiforme PCC 73102] gi|205829792|sp|B2J6D0|RLMN_NOSP7 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|186466534|gb|ACC82335.1| radical SAM enzyme, Cfr family [Nostoc punctiforme PCC 73102] Length = 364 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 128/370 (34%), Positives = 190/370 (51%), Gaps = 39/370 (10%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L+G EL + + G P R Q+ +WIY +G+R +S S++ R + + Sbjct: 22 PPLLGASVAELSAWVQQQGQPA----YRGKQLHEWIYDKGVRSLADISVFSKQWRAEVAE 77 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE--------KSRGTLCV 118 I + ++ DGT K+LLR I IETV IP K+R T+CV Sbjct: 78 I-PIGRSTLHYRSVAPDGTVKYLLRLTDGQI-----IETVGIPTFAERGEGPKARLTVCV 131 Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 S+QVGC + C FC TG RNL EI+ QVL + ++ Sbjct: 132 STQVGCPMACDFCATGKGGYKRNLARHEIIDQVLTVQE-----------------DFQQR 174 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGV 237 +SN+V MG+GEPL N +NV +L + + +R +T+ST G I + + + + Sbjct: 175 VSNVVFMGLGEPLLNTENVLAALKSLNQD--IGIGQRSLTVSTVGIRDRIRQFAQNNLQI 232 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 LA+SLHA + LR L+P R YPLE L+ CR Y ++ R+TFEYV+L G+ND P Sbjct: 233 TLAVSLHAPNQALREKLIPSARAYPLEELLAECREYVEITGR-RVTFEYVLLAGVNDLPE 291 Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 AL L K ++G + +NLIP+NP +Y ++ I F +K+ + +R RGL+ Sbjct: 292 HALELSKCMRGFQSHVNLIPYNPIQEVDYKRPNRDRIEAFVNVLKQQNTAVSVRYSRGLE 351 Query: 358 ILAACGQLKS 367 AACGQL++ Sbjct: 352 ADAACGQLRA 361 >gi|282857182|ref|ZP_06266426.1| 23S rRNA m2A2503 methyltransferase [Pyramidobacter piscolens W5455] gi|282584968|gb|EFB90292.1| 23S rRNA m2A2503 methyltransferase [Pyramidobacter piscolens W5455] Length = 365 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 120/365 (32%), Positives = 185/365 (50%), Gaps = 27/365 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K + M + E + + R Q+ +WIY + + DF+ M+++S+ +R L Sbjct: 25 KRNAFEMTLADWERFVQE---ELDMPRYTADQLCQWIYKKKVFDFRAMTNLSKALRERLP 81 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I P++ + + DGTRK+L R +E+V + + T C+SSQVGC Sbjct: 82 ELLEIRLPKLAKRQTAADGTRKYLWRL-----DDGEYVESVLMDHGNHYTACISSQVGCP 136 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC TG Q RNL+A EI+ S VG I+N+V M Sbjct: 137 LRCEFCATGQQGFKRNLSAGEIVSHFAAMES-----------------DVGHDINNVVFM 179 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 GMGEPL N++NV K++ + + S R +T+STSG I R+ +E + + L +SLH Sbjct: 180 GMGEPLLNYENVVKAVRMFLEPKMRGLSVRHVTISTSGIPEGIRRLADEGLDIYLCLSLH 239 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N+LR+ ++P+N ++PL + A Y R+T EYVMLK +ND+P A L Sbjct: 240 APNNELRSRIMPVNERFPLGAVFSAL-EYWQKKTGVRLTIEYVMLKNVNDTPDCAYELAT 298 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 + + +NLIP+NP G ++ I F + +K +R G DI AACGQ Sbjct: 299 LFSNLQVYVNLIPYNPVAGTQFARPSASRIAPFMKILKGLNVECEVRKEHGADIDAACGQ 358 Query: 365 LKSLS 369 L+ + Sbjct: 359 LRGKT 363 >gi|126663212|ref|ZP_01734210.1| hypothetical protein FBBAL38_07660 [Flavobacteria bacterium BAL38] gi|126624870|gb|EAZ95560.1| hypothetical protein FBBAL38_07660 [Flavobacteria bacterium BAL38] Length = 346 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 125/368 (33%), Positives = 198/368 (53%), Gaps = 24/368 (6%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 ++K+ + + +E+L + G R +Q+++W++ + F+ M+++S+E R Sbjct: 2 QIEKKDIRALTKEQLRTFFVSNGDKA----FRGNQVYEWLWSKRAHTFEDMTNVSKETRA 57 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 +L +F I + ++ + S DGT K +R I +E+V IP ++R T CVSSQV Sbjct: 58 MLQANFVINHIKVDTLQRSEDGTVKNAVRLHDDLI-----VESVLIPTETRTTACVSSQV 112 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GCSL C+FC T K +RNL EI QV I+ R +SNI Sbjct: 113 GCSLDCNFCATARLKRMRNLEPGEIYDQV-------------AAIDNESRLYYDRPLSNI 159 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241 V MGMGEPL N+ NV K++ + + S GL S +RIT+STSG I ++ + E+ LA+ Sbjct: 160 VFMGMGEPLMNYPNVMKAIDMITSSEGLGMSPKRITVSTSGVSKMIKKMADDEVKFKLAV 219 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH+ ++RN ++P + +PL L +A Y ++T+EYV+ KGIND + Sbjct: 220 SLHSAIEEIRNEIMPFTKSFPLTELREAL-EYWYRKTKSKVTYEYVVWKGINDDKKSIDA 278 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L+K K +P K+NLI +NP + + + + + +S + +R RG DI AA Sbjct: 279 LVKFCKYVPCKVNLIEYNPIDDGMFQQASEDATNAYITALAKSNIVAKVRRSRGKDIDAA 338 Query: 362 CGQLKSLS 369 CGQL + S Sbjct: 339 CGQLANKS 346 >gi|29829163|ref|NP_823797.1| hypothetical protein SAV_2621 [Streptomyces avermitilis MA-4680] gi|81719951|sp|Q82JY3|RLMN_STRAW RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|29606269|dbj|BAC70332.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 368 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 125/368 (33%), Positives = 180/368 (48%), Gaps = 23/368 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + E +EA+ IG R Q+ + + R D + +DI R L + Sbjct: 20 RHLADLSPAERKEAVAAIG----EKPFRAKQLSQHYFARYAHDPEQWTDIPAGSRAKLQE 75 Query: 67 HFSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +V D TRK L R + +E+V + R T+C+SSQ GC Sbjct: 76 ALLPDLMTVVRHLSTDQDTTRKTLWRLFDGTL-----VESVLMRYPDRVTMCISSQAGCG 130 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG L RNL+ EI+ Q++ G + IP ++SNIV M Sbjct: 131 MNCPFCATGQAGLDRNLSTGEIVHQIV---------DGMRALRDGEIPGGPARLSNIVFM 181 Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 GMGEPL N+ V ++ +D GL S+R IT+ST G VP I R +E LAIS Sbjct: 182 GMGEPLANYKRVVGAIRALTDPEPDGLGLSQRGITVSTVGLVPAIHRFADEGFKCRLAIS 241 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA ++LR+ LVP+N ++ + ++DA Y S R++ EY +++ IND L Sbjct: 242 LHAPDDELRDTLVPVNTRWKVREVLDAGWEYAARSGR-RLSIEYALIRDINDQAWRGDRL 300 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LKG P +NLIP NP PG ++ S +D F E I G +R RG +I AC Sbjct: 301 GRMLKGRPVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTVRDTRGQEIDGAC 360 Query: 363 GQLKSLSK 370 GQL + + Sbjct: 361 GQLAATER 368 >gi|300776949|ref|ZP_07086807.1| cfr family radical SAM enzyme [Chryseobacterium gleum ATCC 35910] gi|300502459|gb|EFK33599.1| cfr family radical SAM enzyme [Chryseobacterium gleum ATCC 35910] Length = 344 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 119/364 (32%), Positives = 198/364 (54%), Gaps = 24/364 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + + + ++L++ + +G R Q++ W++ + + M+++S+ +R +++ Sbjct: 2 KDIRTLSLDQLKDYFVSLG----EKPFRAKQVYDWLWSKNLHSIDEMTNLSKSLREKISE 57 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 ++I + + S DGT K ++ + +E+V IP ++R T CVSSQVGCSL Sbjct: 58 EYTINPVSVDLLQKSSDGTIKNGVKLHDGLM-----VESVLIPTETRTTACVSSQVGCSL 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC T K +RNL EI+ QV L I+ R +SNIV MG Sbjct: 113 NCEFCATARLKRMRNLEVAEIVDQVAL-------------IDSQSRMYFDRPLSNIVFMG 159 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245 MGEP+ N+ NV +++ + GL S RRIT+STSG I + + E+ V LA+SLH+ Sbjct: 160 MGEPMMNYKNVVEAIKKITQPEGLGMSPRRITVSTSGIPKMIKMLADDELRVKLALSLHS 219 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 RN ++P + K+PL +++A +++ + + ITFEY + KGIND D LIK Sbjct: 220 AIESKRNEIMPFSDKFPLTDIMEALQYWYQKTGSV-ITFEYCVWKGINDGDEDIKALIKY 278 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 K +P+K+NLI +NP +Y +++ + ++ +G + +R RG DI AACGQL Sbjct: 279 CKQVPSKVNLIQYNPIGDGKYDQCNKQAEENYIRQLENAGITVMVRRSRGGDIDAACGQL 338 Query: 366 KSLS 369 + + Sbjct: 339 ANKT 342 >gi|297621155|ref|YP_003709292.1| Radical SAM superfamily protein [Waddlia chondrophila WSU 86-1044] gi|297376456|gb|ADI38286.1| Radical SAM superfamily protein [Waddlia chondrophila WSU 86-1044] Length = 362 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 145/379 (38%), Positives = 209/379 (55%), Gaps = 30/379 (7%) Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69 + REE ++ G+P R +SQI +WIY +G+ D S++S + R L F Sbjct: 5 FDLSREEWQKWAETNGLP----RFVSSQILQWIYEKGVVDPAQFSNLSLKARKFLASQFK 60 Query: 70 IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129 P I +S D + K+LLR + E V +P +SR TLC+SSQVGC + C+ Sbjct: 61 WELPAIHSHLVSVDQSEKFLLRTSDHQL-----FEMVLMPYESRITLCISSQVGCRIGCT 115 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 FC TG L RNLT+ EIL Q+LLA + G+KI+NIV MGMGE Sbjct: 116 FCQTGKLGLQRNLTSGEILSQILLANQSMN----------------GKKITNIVFMGMGE 159 Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSND 249 PL N+D V K+ + D + S R+T+STSG VP I ++G+++ V LAISLH ++ Sbjct: 160 PLDNYDEVLKACRLMVDPKAIGLSMHRVTVSTSGLVPYIEKLGQDLPVRLAISLHQADDE 219 Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309 R+ ++P+NR+YPL L A + YP ITFEYVM++G ND DA L+K + G+ Sbjct: 220 KRSRMMPVNRRYPLSELKKALQQYPA-PKRYGITFEYVMIEGENDRIEDAKKLVKFVSGL 278 Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369 AK+NLIP N +PG E S + +F + +P+R RG DI CGQL + + Sbjct: 279 KAKVNLIPINHFPGLEMKASAADRLKSFQSYLAERSIPAPVRYSRGQDISGGCGQLAAKT 338 Query: 370 KRI----PKVPRQEMQITG 384 + P+V R++ + + Sbjct: 339 QEELNMDPRVLRRQRKQSA 357 >gi|22299968|ref|NP_683215.1| hypothetical protein tll2425 [Thermosynechococcus elongatus BP-1] gi|81742271|sp|Q8DG98|RLMN_THEEB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|22296153|dbj|BAC09977.1| tll2425 [Thermosynechococcus elongatus BP-1] Length = 337 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 130/362 (35%), Positives = 183/362 (50%), Gaps = 31/362 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+G EL+ + G P R Q+ +W+Y +G R Q ++ ++ R L Sbjct: 3 LLGRSAAELKAWVEAQGQPG----YRGQQLHQWLYRKGARSLQEITVFPKQWRAALAD-V 57 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 I EI + DGT K LL + IETV IP R T+CVSSQVGC + C Sbjct: 58 EIGRSEIRYRHDAQDGTVKLLL-----ALADGETIETVGIPSSDRLTVCVSSQVGCPMAC 112 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG RNL EIL QVL +S +G R++S++V MGMG Sbjct: 113 DFCATGKGGYRRNLACHEILDQVLTIQSEMG-----------------RRVSHVVFMGMG 155 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVS 247 EPL N V ++++ + + +R IT+ST G I R+ ++ LA+SLHA + Sbjct: 156 EPLLNLPAVLQAITCLNRD--IGIGQRHITISTVGIPQQIQRLAQHQLQTTLAVSLHAPN 213 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 LR L+P + YPL LI CR Y + RITFEY +L G+ND P+ A L ++L+ Sbjct: 214 QALREQLIPSAKHYPLSQLIADCRAYVQQTGR-RITFEYTVLAGVNDRPQHAEELAQLLR 272 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 G + +NLIP+NP Y + + F ++ G ++ IR RGLD AACGQL+ Sbjct: 273 GFQSHVNLIPYNPIAEAAYQRPTDQHLRQFLSQLQALGVTASIRRSRGLDRQAACGQLRQ 332 Query: 368 LS 369 Sbjct: 333 AQ 334 >gi|124515329|gb|EAY56839.1| putative radical SAM family protein [Leptospirillum rubarum] Length = 379 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 142/351 (40%), Positives = 202/351 (57%), Gaps = 7/351 (1%) Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76 L E + + R Q+ +WI+ + + +++ M ++ + R + + + P + Sbjct: 12 LSEWPSLLSGDRTVPAYRARQVAQWIFRQNVSEWERMKNLPGDDRRRWSDRWDLSLPIVR 71 Query: 77 DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136 DEK S DGTRK LL G IE+V IP R TLCVSSQVGC + C FC T Sbjct: 72 DEKRSRDGTRKLLLELS-----GGALIESVLIPRDDRATLCVSSQVGCGIGCRFCRTAEM 126 Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196 LVRNL+ EIL QV +A LL + P + + +++++V MGMGEPL NFD+ Sbjct: 127 GLVRNLSVSEILGQVRVANRLLAEAPVRDMSKETDPTPFLSRVNHLVFMGMGEPLANFDH 186 Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILV 255 + +SL++ + G S RRIT+STSG I +G I V LA+SL A + +LR L+ Sbjct: 187 LVRSLAVLTSPEGFGLSSRRITVSTSGLAGRIRDLGTSGIAVNLAVSLSAPTEELRENLM 246 Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINL 315 PI+R +P+ ++ ACR YP L N +RITFEYV+L G+ND A L ++L +K+NL Sbjct: 247 PISRHHPIRSILSACRAYP-LRNRQRITFEYVLLGGVNDGEGQARELARLLAPFRSKVNL 305 Query: 316 IPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 IPFNP+PG Y D+ + F E + G ++ +RT RG DIL ACGQL Sbjct: 306 IPFNPYPGSPYHRPDKDRVRRFQEILLAKGVTATLRTTRGEDILGACGQLA 356 >gi|160892219|ref|ZP_02073222.1| hypothetical protein BACUNI_04683 [Bacteroides uniformis ATCC 8492] gi|156858697|gb|EDO52128.1| hypothetical protein BACUNI_04683 [Bacteroides uniformis ATCC 8492] Length = 350 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 131/375 (34%), Positives = 197/375 (52%), Gaps = 29/375 (7%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 N ++K L+G+ EL+ + +G+P QI W+Y + + MS++S + R Sbjct: 3 NDMQKRPLLGLTLAELQNVVKNLGMPG----FSAKQIASWLYDKKVASIDEMSNLSLKHR 58 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 LL + + + VD S DGT K+L R G +E VYIP++ R TLCVSSQ Sbjct: 59 ELLKEIYEVGAEAPVDAMRSVDGTVKYLYR-----AGEGHFVEAVYIPDEDRATLCVSSQ 113 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC + C FC TG Q NLT+ +I+ Q+ K++N Sbjct: 114 VGCKMNCKFCMTGKQGFTANLTSNQIINQI-------------------SSLPERDKLTN 154 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 +VMMGMGEPL N D V K+L I + S G ++S +R+TLS+ G + R E LAI Sbjct: 155 VVMMGMGEPLDNLDEVLKALEIMTASYGYAWSPKRVTLSSVGLKKGLQRFIGESDCHLAI 214 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH+ R L+P + + + +++ R+Y S RR++FEY++ KG+NDS A Sbjct: 215 SLHSPIPLQRRELMPAEKAFSITEIVELLRNY-DFSKQRRLSFEYIVFKGVNDSLPYAKE 273 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L+K+L+G+ +INLI F+ PG +D + + F + + G + IR+ RG DI AA Sbjct: 274 LLKLLRGLDCRINLIRFHAIPGVNLEGADMETMTAFRDYLTSHGLFTTIRSSRGEDIFAA 333 Query: 362 CGQLKSLSKRIPKVP 376 CG L + + K Sbjct: 334 CGMLSTAKQEENKEE 348 >gi|217077834|ref|YP_002335552.1| radical SAM enzyme, Cfr family [Thermosipho africanus TCF52B] gi|217037689|gb|ACJ76211.1| radical SAM enzyme, Cfr family [Thermosipho africanus TCF52B] Length = 341 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 130/368 (35%), Positives = 203/368 (55%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K++++ EEL +G+ + R Q++ WIY + + DF+ M+++S+E R +L+ Sbjct: 2 KKNILDFNYEELVNEFKSLGLE----KYRVDQVFDWIYKKKVFDFKDMTNLSKEHRRILD 57 Query: 66 QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 ++F I P+++D +IS D T K+L P IE+V + + R T C+S+QVGC Sbjct: 58 ENFGIQIPKLLDMQISKIDRTTKFLWELPD-----GNTIESVALFHEGRVTACISTQVGC 112 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + CSFC TG VRNLTA EI+ Q+L ++ N+V Sbjct: 113 PVKCSFCATGQSGYVRNLTAGEIVSQILGIEVHRK-----------------IRVGNVVY 155 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MGMGEPL N++N KS+ + ++ RRIT+ST G I + E + V LA+SL Sbjct: 156 MGMGEPLLNYENTIKSVKMLNNKKMFGIGIRRITISTVGVPEKIIDLAESGLDVKLALSL 215 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +N R+ ++P+N++Y +E LI A + Y ++N R+T EY+++K ND P DA L Sbjct: 216 HATTNFKRDQIIPLNKQYSIEELIFAVKKYQEITN-NRVTIEYILIKEFNDYPEDAEKLA 274 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LKG+ +NLIP NP Y + + F E + + G IR +G DI AACG Sbjct: 275 ELLKGLSVYVNLIPVNPV-NPNYYRPSRWAMERFKEILTKYGIECEIRAEKGTDIDAACG 333 Query: 364 QLKSLSKR 371 QL+ + + Sbjct: 334 QLRRRNLK 341 >gi|290957076|ref|YP_003488258.1| hypothetical protein SCAB_25951 [Streptomyces scabiei 87.22] gi|260646602|emb|CBG69699.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length = 368 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 125/368 (33%), Positives = 181/368 (49%), Gaps = 23/368 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + E +EA+ IG R Q+ + + R D + +DI R L + Sbjct: 20 RHLADLSPAERKEAVAAIG----EKPFRAKQLSQHYFARYAHDPEQWTDIPAGARAKLRE 75 Query: 67 HFSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +V D TRK L R + +E+V + R T+C+SSQ GC Sbjct: 76 ALLPELMTVVRHLSTDQDTTRKTLWRLFDGTL-----VESVLMRYPDRVTMCISSQAGCG 130 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG L RNL+ EI+ Q++ G + IP ++SNIV M Sbjct: 131 MNCPFCATGQAGLDRNLSTAEIVHQIV---------DGMRALRDGEIPGGPARLSNIVFM 181 Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 GMGEPL N++ V ++ +D GL S+R IT+ST G VP I R +E LAIS Sbjct: 182 GMGEPLANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAIHRFADEGFKCRLAIS 241 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA ++LR+ LVP+N ++ + ++DA Y S R++ EY +++ IND L Sbjct: 242 LHAPDDELRDTLVPVNTRWKVREVLDAGWEYTARSGR-RLSIEYALIRDINDQAWRGDRL 300 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LKG P +NLIP NP PG ++ S +D F E I G +R RG +I AC Sbjct: 301 GRLLKGKPVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAGHGVPVTVRDTRGQEIDGAC 360 Query: 363 GQLKSLSK 370 GQL + + Sbjct: 361 GQLAATER 368 >gi|238063328|ref|ZP_04608037.1| radical SAM domain-containing protein [Micromonospora sp. ATCC 39149] gi|237885139|gb|EEP73967.1| radical SAM domain-containing protein [Micromonospora sp. ATCC 39149] Length = 363 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 119/379 (31%), Positives = 185/379 (48%), Gaps = 23/379 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + L + + + ++G P R Q+ + R +RD M+D+ +R Sbjct: 1 MPPRHLADLDLPARQALVTELGEPA----FRAKQMSTHYFGRLVRDPASMTDLPAAIRDR 56 Query: 64 LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L V E DG TRK L R + +E+V + R T+C+SSQ Sbjct: 57 LAGELLPTLLTPVRELACDDGATRKALWRLHDGSL-----VESVLMGYPDRVTVCISSQA 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RNL+ EI+ Q + + ++S++ Sbjct: 112 GCGMACPFCATGQAGLTRNLSTAEIVDQAVYL---------AGVAASGAVAGSPPRLSHV 162 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239 V MGMGEPL N+ V ++ GL S+R IT+ST G VP I R+ E++ V L Sbjct: 163 VFMGMGEPLANYSRVVAAIRRLVAPVPEGLGLSQRHITVSTVGLVPAIRRLASEDLSVTL 222 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA ++LR+ LVP+N+++ + ++DA Y + R++ EY M+K +ND P A Sbjct: 223 ALSLHAPDDELRDELVPVNQRWKVAEVLDAAWDYAARTGR-RVSIEYAMIKNVNDQPWRA 281 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L ++L G +NLIP NP PG + S + F ++ +G S+ +R RG +I Sbjct: 282 DLLGQLLAGRLTHVNLIPLNPTPGSRWDASPKPVEREFVRRLRAAGVSTTVRDTRGREID 341 Query: 360 AACGQLKSLSKRIPKVPRQ 378 ACGQL + R + P++ Sbjct: 342 GACGQLAAAGDRDTETPQE 360 >gi|88803607|ref|ZP_01119132.1| radical SAM enzyme, Cfr family protein [Polaribacter irgensii 23-P] gi|88780619|gb|EAR11799.1| radical SAM enzyme, Cfr family protein [Polaribacter irgensii 23-P] Length = 345 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 126/366 (34%), Positives = 198/366 (54%), Gaps = 24/366 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK+ + + +EEL ++ R +Q+++W++ + + F M++IS+E R +L Sbjct: 3 KKKDIRALTKEELRFFFVEN----NDQAFRGNQVYEWLWSKSLHTFDAMTNISKETREML 58 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +F I + ++ + S DGT K ++ I +E+V IP + R T CVSSQVGC Sbjct: 59 AANFVINHIKVDSMQKSKDGTIKNGIKLHDGLI-----VESVLIPTEKRTTACVSSQVGC 113 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 SL C FC T K +RNL +EI QV++ I+ G K+SNIV Sbjct: 114 SLDCKFCATSRLKRMRNLNPDEIYDQVVV-------------IDKQSQLYFGHKLSNIVF 160 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISL 243 MGMGEPL N+ N+ KS+ + + GL S +RIT+STSG I ++ EE+ LA+SL Sbjct: 161 MGMGEPLMNYKNMMKSIQMITSPEGLGMSSKRITVSTSGVPKMIKKMADEEVKFNLAVSL 220 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ +++R ++P N +PL+ L ++ ++ + IT+EY++ GIND D L+ Sbjct: 221 HSAIDEVRTSIMPFNATFPLKDLKESLEYWYEKTGR-AITYEYIVWDGINDRKEDIKALV 279 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K IP K+NLI +NP E+ + I + ++ + +R RG DI AACG Sbjct: 280 AFCKAIPCKVNLIEYNPIDDGEFQQASSAAINNYISNLEMHDITVNVRRSRGKDIDAACG 339 Query: 364 QLKSLS 369 QL + S Sbjct: 340 QLANKS 345 >gi|116787825|gb|ABK24655.1| unknown [Picea sitchensis] Length = 464 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 156/383 (40%), Positives = 212/383 (55%), Gaps = 28/383 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRG--IRDFQGMSDISQEVRHL 63 K + GM ELE + + M +WK +Y G + M +S++ R Sbjct: 102 KTLVKGMTYHELEAWVQSLSYRAGQAMM----LWKCLYGNGMWAQHVDEMQALSKQFRAT 157 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQV 122 L + + D + DGTRK L G + IETV IP E+ R TLCVSSQV Sbjct: 158 LEKTAEFSVFSLKDVYSASDGTRKILFSL-----GDGLIIETVLIPCERGRTTLCVSSQV 212 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC++ C FCYTG L RNLTA EI+ QV+ AR + G I+N+ Sbjct: 213 GCAMNCQFCYTGRMGLKRNLTAAEIVEQVVYARRHFTNEVG--------------PITNV 258 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 V MGMGEPL NFDNV K+ I D GL FS R++T+STSG VP I R E +LA+S Sbjct: 259 VFMGMGEPLHNFDNVLKAAEIMVDCHGLHFSPRKVTVSTSGLVPQIRRFIRESPCVLAVS 318 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 L+A ++++RN ++PINRKY L+ML+ R G + ++ FEYVML GINDS DA L Sbjct: 319 LNATTDEVRNWIMPINRKYNLDMLLTMLREEIGQRHKFKVLFEYVMLLGINDSLDDARRL 378 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + +++GIP KINLI FNP G ++ S Q+ ++ F + + +GY++ IR RG D +AAC Sbjct: 379 VNLVEGIPCKINLISFNPHEGSSFIPSTQEQMLAFHKIVADAGYATFIRHSRGNDQMAAC 438 Query: 363 GQLK--SLSKRIPKVPRQEMQIT 383 GQL S+ + Q T Sbjct: 439 GQLGKPGNSQPPRMRAPERFQAT 461 >gi|310778596|ref|YP_003966929.1| 23S rRNA m(2)A-2503 methyltransferase [Ilyobacter polytropus DSM 2926] gi|309747919|gb|ADO82581.1| 23S rRNA m(2)A-2503 methyltransferase [Ilyobacter polytropus DSM 2926] Length = 349 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 140/360 (38%), Positives = 201/360 (55%), Gaps = 26/360 (7%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 +ELE+ ++ IG+ + QI+ W++ + IR+ M++IS++ R LL I + Sbjct: 13 KELEDFIVSIGM----KKFNGKQIFDWLHGKIIRNIDDMTNISKKNRELLQSKSYIPFLN 68 Query: 75 IVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133 +V K S D T K++ + IETV + K R TLC+SSQVGC + CSFC T Sbjct: 69 VVKHKTSKIDYTEKFVFKLED-----GNTIETVLLKHKERNTLCISSQVGCPVKCSFCAT 123 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 G VRNL EIL QV + S G+ I+N+V MGMGEP+ N Sbjct: 124 GLDGFVRNLNVHEILNQVYTVQRRF-------------FKSEGKNITNVVFMGMGEPMLN 170 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252 +NV K++ I SD G++ SKRRIT+STSG +P I ++ +E I V LAISLHA++N+ R+ Sbjct: 171 IENVIKAVDILSDENGMNISKRRITISTSGIIPGIEKLLQEKIPVELAISLHAITNEKRD 230 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312 L+PINRKYPLE L Y ++ RITFEYV++ +N + DA L + + Sbjct: 231 ALIPINRKYPLEDLYTILNEYQKITKR-RITFEYVLIDKLNVTQSDADRLAEFMHSFDHV 289 Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSEC-IKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 +NLIP+NP PG +Y + I F + + +R +G DI ACGQL+ K+ Sbjct: 290 LNLIPYNPVPGNDYERPAPEKIKKFYNYLLNERKVNVTLRHEKGSDIDGACGQLRQSIKK 349 >gi|298529502|ref|ZP_07016905.1| radical SAM enzyme, Cfr family [Desulfonatronospira thiodismutans ASO3-1] gi|298510938|gb|EFI34841.1| radical SAM enzyme, Cfr family [Desulfonatronospira thiodismutans ASO3-1] Length = 332 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 143/353 (40%), Positives = 198/353 (56%), Gaps = 21/353 (5%) Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76 ++ L + G P R Q+W+WI+ + DFQ M++IS+ +R L Q F + P +V Sbjct: 1 MQNLLKERGEPA----YRADQLWQWIWQKKAGDFQEMTNISKALRSSLQQEFVLQRPAVV 56 Query: 77 DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136 +K S DGT K LL IETV IPEK T C+S+QVGC + C FC TG Sbjct: 57 QKKESIDGTVKLLLGLNDGFF-----IETVIIPEKDYYTQCISTQVGCPMGCVFCSTGCM 111 Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196 RNLT EI QVL+A L D +++N+V+MGMGEPL N+D Sbjct: 112 GFKRNLTPGEIASQVLVACRHLEDTGLDST-----------RLTNVVLMGMGEPLLNWDA 160 Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVP 256 VKK++ + +DS+GL S+RR+TLST G + G MLA+SLHA DLR L+P Sbjct: 161 VKKAMYMMTDSLGLGISRRRLTLSTVGVRDRLQEFGSSRLGMLAVSLHAPDQDLRRRLMP 220 Query: 257 INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLI 316 + ++ L+ A YP L+ RIT EYV+LK INDSP A L+++L + K+NL+ Sbjct: 221 GAATWDIKDLVRALEQYP-LAPRERITIEYVLLKDINDSPAQARALVRLLSRVKCKVNLL 279 Query: 317 PFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369 +NP Y +K I+TF E ++ G + +R +G DI AACGQL + S Sbjct: 280 AYNPGEQEGYQPPQEKTILTFEEVLRSKGLTVTLRKSKGQDISAACGQLIADS 332 >gi|330466309|ref|YP_004404052.1| ribosomal RNA large subunit methyltransferase N [Verrucosispora maris AB-18-032] gi|328809280|gb|AEB43452.1| ribosomal RNA large subunit methyltransferase N [Verrucosispora maris AB-18-032] Length = 383 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 119/371 (32%), Positives = 182/371 (49%), Gaps = 23/371 (6%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 + + L + + + +G P R QI + R +RD M+D+ R Sbjct: 20 SMPPQHLADLDLAGRKALVTGLGEPA----FRARQISTHYFGRLVRDPAQMTDLPAASRA 75 Query: 63 LLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L V E DG TRK L R + +E+V + R T+C+SSQ Sbjct: 76 RLADQLLPRLLNPVRELACDDGATRKALWRLHDGAL-----VESVLMGYPDRVTVCISSQ 130 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC + C FC TG L RNL+ EI+ Q + + + ++S+ Sbjct: 131 AGCGMACPFCATGQAGLTRNLSTAEIVDQAVYLAGV---------AASGAVVGSPARLSH 181 Query: 182 IVMMGMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVM 238 +V MGMGEPL N++ V ++ GL S+R IT+ST G VP I R+ E++ V Sbjct: 182 VVFMGMGEPLANYNRVVAAIRRLVAPAPEGLGLSQRHITVSTVGLVPAIHRLASEDLSVT 241 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLHA ++LR+ LVP+N+++ + ++DA Y + R++ EY M+K +ND P Sbjct: 242 LALSLHAPDDELRDELVPVNQRWKVSEVLDAAWAYAARTGR-RVSIEYAMIKDVNDQPWR 300 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L ++L G A +NLIP NP PG + S + F ++ +G S+ +R RG +I Sbjct: 301 ADLLGRLLAGKLAHVNLIPLNPTPGSRWDASPKPVEREFVRRLRDAGVSTTVRDTRGREI 360 Query: 359 LAACGQLKSLS 369 ACGQL + Sbjct: 361 DGACGQLAAAE 371 >gi|189463574|ref|ZP_03012359.1| hypothetical protein BACCOP_04298 [Bacteroides coprocola DSM 17136] gi|189429677|gb|EDU98661.1| hypothetical protein BACCOP_04298 [Bacteroides coprocola DSM 17136] Length = 349 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 128/369 (34%), Positives = 191/369 (51%), Gaps = 29/369 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K L+G E++ + +G+P QI W+Y + + M+++S + R L Sbjct: 5 KIPLLGKTLSEIQGIVHGLGMPG----FTAKQIVAWLYDKKVFSIDDMTNLSLKNRERLK 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +++ I + E S DGT K+L C IE+VYIP++ R TLCVSSQVGC Sbjct: 61 ENYEIGVTAPIHEMRSVDGTVKYLF-----CTPEGDYIESVYIPDEDRATLCVSSQVGCK 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q +LT +IL Q+ K++NIV M Sbjct: 116 MNCKFCMTGKQGYTNSLTPTQILNQIYSIPERD-------------------KLTNIVFM 156 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEP N D V +SL I + G ++S +RIT+ST G + R EE LA+SLH+ Sbjct: 157 GMGEPFDNLDAVLRSLEILTADYGYAWSPKRITVSTVGLRKGLERFLEESDCHLAVSLHS 216 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 R L+P + + + +ID R Y S RR++FEY++ KG+NDS A LIK+ Sbjct: 217 PFPAQRRELMPAEKAFSITEIIDILRRY-DFSKQRRLSFEYIVFKGVNDSMLYAKELIKL 275 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G+ +INLI F+ P + +D + ++ F + + + G + IR RG DI AACG L Sbjct: 276 LRGLDCRINLIRFHAIPNVDLEGTDMESMLAFRDYLTQHGVFATIRASRGEDIFAACGML 335 Query: 366 KSLSKRIPK 374 + ++ K Sbjct: 336 STAKRQAEK 344 >gi|313203965|ref|YP_004042622.1| 23S rRNA m(2)a-2503 methyltransferase [Paludibacter propionicigenes WB4] gi|312443281|gb|ADQ79637.1| 23S rRNA m(2)A-2503 methyltransferase [Paludibacter propionicigenes WB4] Length = 345 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 130/374 (34%), Positives = 201/374 (53%), Gaps = 29/374 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K +L+G +EL++ + ++G+P QI +W+Y + + M++IS + R L Sbjct: 1 MDKIALVGKNIDELKDIVSELGMPA----FTAKQISEWLYKKRVFSLDEMTNISAKNRAL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L + + V S DGT+K+L R G IE+VYIP++ R TLCVSSQVG Sbjct: 57 LAAKYDVGRSLPVQAVESTDGTKKYLFRTE-----GGHFIESVYIPDEDRATLCVSSQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG Q LT EIL Q++ ++N+V Sbjct: 112 CKMGCMFCMTGKQSFTAQLTTTEILNQIMSI-------------------PEAETLTNLV 152 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MGMGEP N + +SL I + G +S RRIT+S+ G +P + E LAISL Sbjct: 153 FMGMGEPFDNTLAMLRSLEILTADYGYGWSPRRITVSSIGLIPGMKVFLERSNCHLAISL 212 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ ++ R L+PI + +P+ ++D R + S+ RR++FEY++ G+NDS R A+ L+ Sbjct: 213 HSPFSEERLKLMPIEKSFPIAKVLDEIRKH-DFSHQRRVSFEYILFDGVNDSMRHAVELV 271 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+L+GI ++NLI F+ PG + S + + F + + +G +S IR RG DI AACG Sbjct: 272 KLLRGIDCRVNLIRFHAIPGIDLKSSTPEKMTFFRDYLTSNGVTSTIRRSRGEDIFAACG 331 Query: 364 QLKSLSKRIPKVPR 377 L +L K + + Sbjct: 332 MLSTLEKEKEEAQQ 345 >gi|320161065|ref|YP_004174289.1| hypothetical protein ANT_16630 [Anaerolinea thermophila UNI-1] gi|319994918|dbj|BAJ63689.1| hypothetical protein ANT_16630 [Anaerolinea thermophila UNI-1] Length = 357 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 118/374 (31%), Positives = 187/374 (50%), Gaps = 26/374 (6%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 + ++ + E+L+ L+ G P R Q+W+ +Y + + + + + Sbjct: 5 ITMSERPLIYDFDLEDLQNILVAWGEPP----FRAKQVWEGLYHSFWNSPEEFTHLPKTL 60 Query: 61 RHLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119 R+ L + FS + + S DG T K L P IETV + K R TLC+S Sbjct: 61 RNRLAEEFSFSHLSPIQTYASEDGETSKTLFHLPDNR-----SIETVLMRYKERRTLCIS 115 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 +Q GC++ C FC TG R+L++ EI+ QV+ LL + Sbjct: 116 TQSGCAMGCVFCATGQMGFGRHLSSGEIVEQVIYFARLLRKTNEVVTNVVV--------- 166 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVM 238 MGMGEP N++N K+++ + G + RR T+ST G VP I R +E + Sbjct: 167 -----MGMGEPFHNYENTLKAIARLNHPEGFNLGARRFTISTVGLVPMIERFAQENHQIN 221 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LAISLHA ++ LR+ L+P+N+KYP+ L+ A R Y + R+TFE+ +++ INDSP Sbjct: 222 LAISLHAANDTLRSSLLPVNKKYPISDLMRAVRQYVAQTGR-RVTFEWALIRDINDSPEH 280 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L +LKG+ +N+IP NP + ++ F ++++G + IR RG+DI Sbjct: 281 ARELASLLKGLLCHVNVIPLNPTQKYHGKATTRERAEAFCSILQKAGIPATIRLRRGIDI 340 Query: 359 LAACGQLKSLSKRI 372 A CGQL + + Sbjct: 341 QAGCGQLATQHTQT 354 >gi|15616897|ref|NP_240110.1| hypothetical protein BU286 [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681651|ref|YP_002468037.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471340|ref|ZP_05635339.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11387286|sp|P57373|RLMN_BUCAI RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|25320166|pir||D84963 hypothetical protein [imported] - Buchnera sp. (strain APS) gi|10038961|dbj|BAB12996.1| hypothetical protein [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219624494|gb|ACL30649.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 363 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 157/364 (43%), Positives = 212/364 (58%), Gaps = 24/364 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K +L+ + R+ L+ L+ +G T Q+ WIY DF M +IS + R Sbjct: 12 ISKINLLDLNRQNLKYFLISLG----AKNFCTEQVMSWIYNYYCDDFNKMLNISIKTRKK 67 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L + I E ++EKIS DGT KW+ +IETVY+PEK R TLCVSSQ+G Sbjct: 68 LYEKSYIFASEFIEEKISYDGTIKWI------TDINNQKIETVYMPEKKRSTLCVSSQIG 121 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 CSL C FC TG + RNL EI+ Q+ A L + ++ + I+NIV Sbjct: 122 CSLKCHFCATGQEGFQRNLKVSEIIAQIWQANKRLKE------------KNIKKNITNIV 169 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MGMGEPL N NV +L+I D G SKRR+TLSTSG VP + ++ I V LAISL Sbjct: 170 FMGMGEPLLNLKNVVSALTIILDEYGFGLSKRRVTLSTSGIVPALDKLRNMIDVSLAISL 229 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALN 301 HA ++ +RNI++PINRKY + ++ + Y SNA R IT EYVML INDS +A Sbjct: 230 HAPNDFIRNIIMPINRKYNISSVLSSALKYFKYSNANRGGITIEYVMLDRINDSNENARQ 289 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L +L IP+KINLIP+N + G +LCS+ I F+ +++ G+++ IR RG DI AA Sbjct: 290 LSVLLSKIPSKINLIPWNSFSGPSFLCSNTDRINMFANILRKKGFTTTIRKNRGEDINAA 349 Query: 362 CGQL 365 CGQL Sbjct: 350 CGQL 353 >gi|282876907|ref|ZP_06285759.1| radical SAM enzyme, Cfr family [Prevotella buccalis ATCC 35310] gi|281300950|gb|EFA93267.1| radical SAM enzyme, Cfr family [Prevotella buccalis ATCC 35310] Length = 343 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 125/370 (33%), Positives = 190/370 (51%), Gaps = 30/370 (8%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M KK+ L+GM EL+E +G+P Q+ KW+Y R + M+DIS+ Sbjct: 1 METGKKK-LLGMTLSELKEVAQALGMPS----FAGGQMAKWLYQRQVTSIGEMTDISKSN 55 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L + + I +D + S DGT K+L +ETV+IP+ R TLCVS Sbjct: 56 RERLAEEYEIGCMAHIDAQYSKDGTIKYLF-----PTASGKFVETVFIPDDDRATLCVSC 110 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC + C FC TG Q NLT +IL QV +++ Sbjct: 111 QVGCKMNCLFCQTGKQGFEGNLTYADILNQVYSLPERD-------------------RLT 151 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 NIV MG GEP+ N DNV + + + G ++S +RIT+S+ G + R +E +A Sbjct: 152 NIVFMGQGEPMDNLDNVLRVTQVMTADYGYAWSPKRITVSSVGVKGKLKRFLDESDCHVA 211 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ISLH+ + R++L+P + P+E ++D R Y ++ RR++FEY++ G+ND+P A Sbjct: 212 ISLHSALPEQRSMLMPAEKGMPIEQIVDLLRGY-DFAHQRRLSFEYIVFGGLNDTPMHAR 270 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 +I +L G+ ++NLI F+ P +D++ + F + G + IR RG DI A Sbjct: 271 RIIDLLHGLDCRVNLIRFHQIPNVPLKGADEQKMENFRNYLTSHGVFTTIRASRGQDIFA 330 Query: 361 ACGQLKSLSK 370 ACG L + K Sbjct: 331 ACGLLSTAKK 340 >gi|222823067|ref|YP_002574640.1| radical SAM enzyme (Cfr family) [Campylobacter lari RM2100] gi|254807160|sp|B9KEA4|RLMN_CAMLR RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|222538288|gb|ACM63389.1| conserved hypothetical protein, radical SAM enzyme (Cfr family) [Campylobacter lari RM2100] Length = 356 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 138/379 (36%), Positives = 205/379 (54%), Gaps = 42/379 (11%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++++ +EELE + + R QI++W+Y + DF MS + ++ R L + Sbjct: 5 KNMLDFTKEELENLV--------QPKFRAKQIFEWVYKKYADDFLQMSSLPKDFRVYLQK 56 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------------R 113 +F + V ++ S DG+ K+L +IE V +P K R Sbjct: 57 NFHFSPLKCVKDEKSKDGSIKYLFELLD-----GKKIEAVLLPMKEELVDENGKIIKHAR 111 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 T+CVSSQVGC CSFC T L RNL+A EI+ Q+L + Sbjct: 112 YTICVSSQVGCKSGCSFCLTAKGGLSRNLSAGEIVGQILWIKKHN--------------K 157 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233 + NIV MGMGEPL N NV K++ I +D+ L+ S RR T+STSG I +GE Sbjct: 158 IPYERRVNIVYMGMGEPLDNLKNVSKAVKILADNDALAISPRRQTISTSGLAKQIKELGE 217 Query: 234 E-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 +GV+LAISLHAV+++LR+ L+PIN+ Y + +++A R++P + +R+ FEY+++ GI Sbjct: 218 MNLGVLLAISLHAVNDELRSELMPINKAYNIASIMEAVRNFP-IDQRKRVMFEYLLIDGI 276 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 ND A L+K+L GI AK+NLI FNP G Y ++ + F + + G + IR Sbjct: 277 NDKIEHAKELVKLLNGIKAKVNLILFNPHEGSLYNRPSVENAIKFQDYLSAKGVTCTIRE 336 Query: 353 PRGLDILAACGQLKSLSKR 371 +GLDI AACGQLK + Sbjct: 337 SKGLDISAACGQLKERQSK 355 >gi|253828191|ref|ZP_04871076.1| Fe-S cluster redox enzyme [Helicobacter canadensis MIT 98-5491] gi|253511597|gb|EES90256.1| Fe-S cluster redox enzyme [Helicobacter canadensis MIT 98-5491] Length = 346 Score = 388 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 138/368 (37%), Positives = 200/368 (54%), Gaps = 28/368 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K+++ G L ++L + R QI+ W+YV DF+ M ++ + +R Sbjct: 1 MDKQNVFGFTLNSLSDSLKDF------PKFRAKQIYHWLYVHYENDFEKMENLPKNLREF 54 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-SRGTLCVSSQV 122 L ++F EI ++ S DG+ K+L + E V++ K + TLC+SSQV Sbjct: 55 LKENFISNAVEIAKKEQSSDGSVKYLFKTADNLT-----YEAVFLKMKEDKFTLCLSSQV 109 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + CSFC T VRNL A E++ QV + K NI Sbjct: 110 GCKVGCSFCLTAKGGFVRNLNAGEMVYQVFAIKKDQNI--------------PSNKAVNI 155 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241 V MGMGEPL N +NV K + I S+ GLS S+RR T+STSG P I ++G ++GV LAI Sbjct: 156 VYMGMGEPLDNLENVTKCIQILSELDGLSISRRRQTISTSGIAPKIKKLGALDLGVQLAI 215 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHAV ++LR L+PIN+ Y ++ +ID +P + + +R+ FEY+M+ GINDS A Sbjct: 216 SLHAVDDELRTKLMPINKAYNIQNIIDEVVAFP-IDSRKRVMFEYLMIDGINDSLECAKK 274 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L+ +L I AK+NLI FNP G Y ++ + F E + + G IR +GLDI AA Sbjct: 275 LVALLNKIKAKVNLIYFNPHEGSLYKRPSKEKVEAFREYLLKKGLLCTIRESKGLDISAA 334 Query: 362 CGQLKSLS 369 CGQL+ Sbjct: 335 CGQLREKE 342 >gi|188585964|ref|YP_001917509.1| radical SAM enzyme, Cfr family [Natranaerobius thermophilus JW/NM-WN-LF] gi|205829820|sp|B2A2K6|RLMN_NATTJ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|179350651|gb|ACB84921.1| radical SAM enzyme, Cfr family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 351 Score = 388 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 128/372 (34%), Positives = 198/372 (53%), Gaps = 31/372 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+SL + EL+E + G Q R QI+ W+Y++ + + MS+I +++R L Sbjct: 5 KQSLKDLTLNELQEYFSRKGWQQ----FRAKQIFDWMYIQQVDSIEVMSNIPKKLRQELM 60 Query: 66 QHFSIIYPEIVD---EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 ++ +I E+ DGT K+L + + +ET + T+C+SSQ Sbjct: 61 ENCTINDLELDSNNIYTSPTDGTIKFL-----SVLKDGIGVETTIMKYDYGNTVCISSQA 115 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC++ C FC + T R+L+ E++ QVL+A +L I+NI Sbjct: 116 GCNMNCVFCASTTGGKERDLSPGEMIDQVLMANKVL---------------PGSESINNI 160 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 V+MG GEPL N+ ++ K L I +D GL+ R IT+ST G VP I + EE + + LAI Sbjct: 161 VVMGSGEPLENYQHLIKFLKIVNDGKGLNIGMRHITVSTCGLVPEIYNLAEEELQLNLAI 220 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA +++LRN L+P+N+ YP+ L++AC+ Y + RITFEYV++K NDS A Sbjct: 221 SLHAPNDELRNKLIPLNKIYPIHELLEACQVYFQKTGR-RITFEYVLIKDFNDSIDLAKE 279 Query: 302 LIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L + L +P +NLIPFNP ++ I F ++ + +R RG+D+ Sbjct: 280 LSETLTALKMPVHVNLIPFNPVEETKFTAPPSSRISDFKNNLQSNNIGVTVRKERGVDVD 339 Query: 360 AACGQLKSLSKR 371 ACGQL+S R Sbjct: 340 GACGQLRSKVMR 351 >gi|72161087|ref|YP_288744.1| ribosomal RNA large subunit methyltransferase N [Thermobifida fusca YX] gi|123760876|sp|Q47S46|RLMN_THEFY RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|71914819|gb|AAZ54721.1| Conserved hypothetical protein 48 [Thermobifida fusca YX] Length = 365 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 122/365 (33%), Positives = 183/365 (50%), Gaps = 23/365 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + +E +A+ ++G R Q+ + + R D M+D+ R L + Sbjct: 17 RHLADLDPQERRDAVAELG----EKPFRARQLAQHYFGRLEADTARMTDLPAASRERLGE 72 Query: 67 HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 V +G TRK L R V +E+V + R TLCVSSQ GC Sbjct: 73 ALLPQLLTPVKHVTCDNGMTRKTLWR-----AFDGVLVESVLMRYPDRVTLCVSSQAGCG 127 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG L RNL+ EI+ QV+ + D+ + +ISNIV M Sbjct: 128 MNCPFCATGQAGLTRNLSTAEIVDQVVSSAR---------DLARGTVAGGPGRISNIVFM 178 Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAIS 242 GMGEPL N+ V ++ +D GL S+R IT+ST G VP I ++ E + V LA+S Sbjct: 179 GMGEPLANYKRVLAAIRRITDPVPDGLGISQRGITVSTVGLVPAIEKLTAERMQVRLAVS 238 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA ++LR+ LVP+N ++ + ++DA Y + RR++ EY +++ IND A L Sbjct: 239 LHAPDDELRDELVPVNHRWKVAEVLDAAWRYAD-TTGRRVSIEYALIRDINDQAWRADLL 297 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +++ G A +NLIP NP PG ++ S + F ++ G S +R RG +I AC Sbjct: 298 GRLVAGRLAHVNLIPLNPTPGSKWTASRPEVEREFVRRLRSHGVSVTVRDTRGREIDGAC 357 Query: 363 GQLKS 367 GQL + Sbjct: 358 GQLAA 362 >gi|239982588|ref|ZP_04705112.1| hypothetical protein SalbJ_24361 [Streptomyces albus J1074] gi|291454431|ref|ZP_06593821.1| conserved hypothetical protein [Streptomyces albus J1074] gi|291357380|gb|EFE84282.1| conserved hypothetical protein [Streptomyces albus J1074] Length = 370 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 123/369 (33%), Positives = 180/369 (48%), Gaps = 25/369 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + E +EA+ IG R Q+ + + R D +DI R L Sbjct: 22 RHLADLTPAERKEAVAAIG----EKPFRAKQLSQHYFARYAHDPAEWTDIPAGSREKLRS 77 Query: 67 HFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +V ISCD TRK L R + +E+V + R T+C+SSQ GC Sbjct: 78 ELLPDLMSVV-RHISCDDDTTRKTLWRLHDGTL-----VESVLMRYPDRVTMCISSQAGC 131 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EI+ Q++ G + +P ++SNIV Sbjct: 132 GMNCPFCATGQAGLDRNLSTAEIVHQIV---------DGMRALRDGEVPGGPARLSNIVF 182 Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 MGMGEPL N++ V ++ +D GL S+R IT+ST G VP I R +E LA+ Sbjct: 183 MGMGEPLANYNRVTGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAIHRFADEGFKCRLAV 242 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++LR+ LVP+N ++ + ++D+ Y S R++ EY +++ IND Sbjct: 243 SLHAPDDELRDTLVPVNTRWKVREVLDSAWEYAEKSGR-RVSIEYALIRDINDQAWRGDL 301 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++LK +NLIP NP PG ++ S +D F E I G +R RG +I A Sbjct: 302 LGRLLKNKRVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIASHGVPVTVRDTRGQEIDGA 361 Query: 362 CGQLKSLSK 370 CGQL + + Sbjct: 362 CGQLAATER 370 >gi|205829899|sp|A4X4J7|RLMN_SALTO RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase Length = 372 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 116/370 (31%), Positives = 179/370 (48%), Gaps = 23/370 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + L + + ++G P R R Q+ + R +RD + M+D+ R Sbjct: 20 MPPRHLADFDLAGRQTLVTELGEP----RFRARQVSTHYFGRLVRDPEQMTDLPAATREK 75 Query: 64 LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L V E DG T K L R + +E+V + R T+C+SSQ Sbjct: 76 LADQLLPTLLTPVRELACDDGATHKALWRLHDGSL-----VESVLMGYPDRVTVCLSSQA 130 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RNL+ EI+ Q + + ++S + Sbjct: 131 GCGMACPFCATGQAGLTRNLSTAEIVDQAVYL---------AGVAASGAVAGSPPRLSRV 181 Query: 183 VMMGMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239 V MGMGEPL N++ V ++ GL S+R IT+ST G VP I R+ E++ V L Sbjct: 182 VFMGMGEPLANYNRVVAAIRRLVAPSPEGLGLSQRHITVSTVGLVPAIRRLASEDLSVTL 241 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA ++LR+ LVP+N+++ + +++A Y + R++ EY M+K +ND P A Sbjct: 242 ALSLHAPDDELRDELVPVNQRWKVSEVLEAAWEYAARTGR-RVSIEYAMIKDVNDQPWRA 300 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L ++L A +NLIP NP PG + S + F ++ +G S+ +R RG +I Sbjct: 301 DLLGRLLADRLAHVNLIPLNPTPGSRWDASPKPVEREFVRRLRAAGVSTTVRDTRGREID 360 Query: 360 AACGQLKSLS 369 ACGQL + Sbjct: 361 GACGQLAAAE 370 >gi|33865151|ref|NP_896710.1| ribosomal RNA large subunit methyltransferase N [Synechococcus sp. WH 8102] gi|81575037|sp|Q7U8K0|RLMN_SYNPX RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|33638835|emb|CAE07132.1| conserved hypothetical protein [Synechococcus sp. WH 8102] Length = 344 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 124/370 (33%), Positives = 179/370 (48%), Gaps = 37/370 (10%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ-H 67 L+G ELE + G R Q+ W+Y +G R ++ + + R L + Sbjct: 2 LLGRSAAELESWAVAQG----QKPFRGRQLHDWLYAKGARSLSEITVLPKAWRESLKEDG 57 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 + + V ++ D T K LL IETV IP R T+CVSSQVGC + Sbjct: 58 VEVGRLKEVHRSVAADATTKLLL-----STDDGETIETVGIPTDQRLTVCVSSQVGCPMA 112 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC TG L R+L EI+ QVL R ++ R+ S+IV MGM Sbjct: 113 CRFCATGKGGLQRSLRTHEIVDQVLSVREVM-----------------DRRPSHIVFMGM 155 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIGVMLA 240 GEPL N V ++ +D L +RRIT+ST G + ++ E LA Sbjct: 156 GEPLLNSQAVLDAIRCLNDD--LGIGQRRITVSTVGVPKTLPQLAELALATLGRAQFTLA 213 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA + LR L+P YP E L++ CRHY ++ R++FEY++L G+ND+P A Sbjct: 214 VSLHAPNQALREELIPTAHAYPYEALLEDCRHYLAVTGR-RVSFEYILLGGLNDAPEHAA 272 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L + G + +NLI +NP E+ + I F ++R G + +R RGLD A Sbjct: 273 ELADRVGGFQSHVNLIAYNPIEEEEFQRPTRARIEGFQRVLERRGVAVSLRASRGLDQNA 332 Query: 361 ACGQLKSLSK 370 ACGQL+ + Sbjct: 333 ACGQLRRRRQ 342 >gi|311748631|ref|ZP_07722416.1| radical SAM enzyme, Cfr family [Algoriphagus sp. PR1] gi|126577157|gb|EAZ81405.1| radical SAM enzyme, Cfr family [Algoriphagus sp. PR1] Length = 352 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 130/371 (35%), Positives = 202/371 (54%), Gaps = 24/371 (6%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M ++K + + EELEE L G + R Q++ W++ + +++F MS+IS E Sbjct: 1 MEEIQKSDVRKLSLEELEEFFLAHG----EKKFRAKQVYDWLWNKSLKNFDDMSNISLET 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R LL ++F I + + + S DGT K ++ I +E+V IP R T CVSS Sbjct: 57 RELLKKYFKINHILVDLMQHSSDGTIKNAVKLYDDKI-----VESVLIPTSKRITACVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGCSL C+FC T K +RNL +EI QV+ + R ++ Sbjct: 112 QVGCSLDCNFCATARLKRMRNLNPDEIYDQVVAIKE-------------EAEKYFERPLT 158 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVML 239 NIV MGMGEPL N+ NV ++ + GL + RRITLST G I ++ + E+ L Sbjct: 159 NIVFMGMGEPLLNYANVLAAIDKITSPEGLGMAARRITLSTVGVTKMIRKMADDEVKFNL 218 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH+ N+ R+ L+PIN P+E L ++ +++ + ++T+EYV+ G+ND R A Sbjct: 219 AVSLHSAINETRSRLMPINDSNPVEELGESLKYWYKKTGR-KVTYEYVIWDGVNDDERHA 277 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L K K IP+K+N+I +NP E+ + Q+ + + ++ G + +R RG DI Sbjct: 278 RALAKFCKLIPSKVNIIQYNPIDEGEFRQAKQEAVDMYIRVLESQGVIAKVRKSRGQDID 337 Query: 360 AACGQLKSLSK 370 AACGQL + ++ Sbjct: 338 AACGQLANKNE 348 >gi|289422335|ref|ZP_06424185.1| radical SAM enzyme, Cfr family [Peptostreptococcus anaerobius 653-L] gi|289157280|gb|EFD05895.1| radical SAM enzyme, Cfr family [Peptostreptococcus anaerobius 653-L] Length = 352 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 133/380 (35%), Positives = 205/380 (53%), Gaps = 32/380 (8%) Query: 1 MNFLK--KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQ 58 MN K K L + EE+ E +L +G + R +Q++ W+Y + IRDF M ++ + Sbjct: 1 MNEGKIGKVVLKNLTEEEMVEFILSLG----EKKFRAAQVYSWVY-KNIRDFDEMKNVPK 55 Query: 59 EVRHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLC 117 +R L + I +I + S D T+K+L I IETV + SR T+C Sbjct: 56 SLRDKLREKSIIGNLDIELKLESKIDNTKKYLFLLNDGNI-----IETVAMDYDSRLTVC 110 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 VS+QVGC + C+FC + L R+L A EIL Q++ + +G+ Sbjct: 111 VSNQVGCRMGCNFCASTIGGLSRHLEAWEILDQIMKVQE-----------------DLGK 153 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIG 236 ++SNIVMMG GEPL NFDN + L + ++ GL+ R ITLS G V I + + +I Sbjct: 154 RVSNIVMMGSGEPLDNFDNSMRFLKLVNEKNGLNIGNRHITLSRCGLVDRILELADMQIP 213 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 + LAISLH+ ++ R ++PI +KY ++ L+DACR+Y +N R+TFEY ++K N++ Sbjct: 214 INLAISLHSPYDEERKEIMPIAKKYTIKELMDACRYYISKTNR-RVTFEYALIKDKNNTD 272 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 R+A L+++L+G+ +NLIP NP +Y + + I F + ++ IR G Sbjct: 273 REAKKLVELLRGMLCHVNLIPINPIAERDYEKPNIEYINKFKNYLDKNKIPVSIRNSMGS 332 Query: 357 DILAACGQLKSLSKRIPKVP 376 DI ACGQL+ K K Sbjct: 333 DISGACGQLRRDYKGTSKEE 352 >gi|206890968|ref|YP_002247985.1| radical SAM enzyme, Cfr family [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742906|gb|ACI21963.1| radical SAM enzyme, Cfr family [Thermodesulfovibrio yellowstonii DSM 11347] Length = 342 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 156/365 (42%), Positives = 216/365 (59%), Gaps = 27/365 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K++L + +++E+ +L +P R+ QI +WIY + + +++ S+ +R Sbjct: 1 MYKQNLKELTTKQIEKIILDESLPL----YRSKQIVQWIYKKFVDSINDITEWSKSLRER 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 ++ + I + D++IS DGT K+L +IE+V I +K R TLCVSSQVG Sbjct: 57 FSEKYYIGRINLFDKRISIDGTIKFLWELED-----GEKIESVLISDKDRLTLCVSSQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C L C FC TG L RNL A EI+ Q + + I RKI+NIV Sbjct: 112 CMLKCKFCLTGKIGLKRNLKAWEIVDQYIQVSKI--------------IQKENRKITNIV 157 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAIS 242 MGMGEPL NF+NV ++L D + FS RITLST+G +P I + + + LAIS Sbjct: 158 FMGMGEPLLNFENVVEALWRLKD--LILFSPSRITLSTAGIIPAIKELPYKAPAIKLAIS 215 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 L+A N R+ L+PIN+KYPL LI R YP L RITFEY+++KGIN S +DA L Sbjct: 216 LNATDNKTRSYLMPINKKYPLHELIKTLRDYP-LKPRHRITFEYILIKGINCSEKDAYRL 274 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LKGIP+KINLIPFNPW GCE+ + +I+ F E + GYS IR +G DILAAC Sbjct: 275 SELLKGIPSKINLIPFNPWEGCEFERPEDNEILNFQEILAARGYSVFIRKSKGTDILAAC 334 Query: 363 GQLKS 367 GQLK+ Sbjct: 335 GQLKA 339 >gi|289522515|ref|ZP_06439369.1| radical SAM enzyme, Cfr family [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504351|gb|EFD25515.1| radical SAM enzyme, Cfr family [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 343 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 140/361 (38%), Positives = 201/361 (55%), Gaps = 27/361 (7%) Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69 + + ++ E L R R QI +WIY + I DFQ M+++S+E+R L Sbjct: 8 LELDYDQWTETLTG---KFGLQRYRADQICQWIYQKKIFDFQEMTNLSKELRGKLADAVM 64 Query: 70 IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129 + P + E+ S DGT+K+L +F +E+V + ++ R T C+S+QVGC L C+ Sbjct: 65 VAPPILTREETSKDGTKKYLWQFHD-----GERVESVLLSQEGRLTACLSTQVGCPLACT 119 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 FC +G VR+L+ EI+ Q L L G R I N+V MGMGE Sbjct: 120 FCASGEGGFVRDLSGGEIVGQFLAMEKLAG-----------------RDIDNVVYMGMGE 162 Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSN 248 P N ++V KS+ I ++ RRIT+ST+G VP I + E ++ V L++SLHA ++ Sbjct: 163 PFLNQESVFKSIKILNEPKMRGLGIRRITISTAGIVPGILALAEAQMPVKLSVSLHAPND 222 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 LR+ L+PIN+KYPL L++A R Y +N R+TFEY+ML+G+ND P A L +LKG Sbjct: 223 RLRSKLMPINKKYPLASLLEALRRYQSATN-DRVTFEYLMLEGVNDLPEYAYELAALLKG 281 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 + INLIP+N G +Y S I FS + + IR RG DI AACGQLK + Sbjct: 282 LSFYINLIPYNQVEGSKYKRSSAGRIKAFSNILSQLNIEHEIRRERGSDINAACGQLKRI 341 Query: 369 S 369 S Sbjct: 342 S 342 >gi|170288910|ref|YP_001739148.1| radical SAM protein [Thermotoga sp. RQ2] gi|205829920|sp|B1LAW7|RLMN_THESQ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|170176413|gb|ACB09465.1| radical SAM enzyme, Cfr family [Thermotoga sp. RQ2] Length = 343 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 134/371 (36%), Positives = 205/371 (55%), Gaps = 32/371 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++L+ + EEL + +G+ R R QI W++ + + +F M+++S++ R LL + Sbjct: 2 KNLLDLSYEELVAEVTSLGLE----RYRADQILDWVFNKKVNNFDEMTNLSKQHRALLKE 57 Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 HFSI + +++D+K+S DGT K+L IE+V + R T C+S+QVGC Sbjct: 58 HFSIPFLKLLDKKVSRIDGTTKFLWELED-----GNTIESVMLFHPDRITACISTQVGCP 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG VRNLT EI+ Q+L +KI N+V M Sbjct: 113 VKCIFCATGMSGFVRNLTTGEIVAQILSMER-----------------EEKKKIGNVVYM 155 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 GMGEPL N++N KS+ I + + RRIT+ST G I ++ EE + V LA+SLH Sbjct: 156 GMGEPLLNYENTIKSIRILNHKKMGNIGIRRITISTVGIPDRIIQLAEEGLDVKLALSLH 215 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N R+ LVP+N+KY +E +++A + Y + R+T EYV+++GIND DA L + Sbjct: 216 APTNFKRDQLVPLNKKYSIEEILNAVKIYQRKT-GNRVTIEYVLIRGINDEISDAKKLAE 274 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 ILK + +NLIP NP + ++ ++ F + +G + IR +G DI AACGQ Sbjct: 275 ILKNMKIFVNLIPVNPTAE-DLKKPSRERLLAFKRILLENGIEAEIRREKGSDIEAACGQ 333 Query: 365 LKSLSKRIPKV 375 L+ KRI Sbjct: 334 LR--LKRIKST 342 >gi|32477801|ref|NP_870795.1| Fe-S-oxidoreductase [Rhodopirellula baltica SH 1] gi|81658686|sp|Q7UHU7|RLMN_RHOBA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|32448358|emb|CAD77872.1| conserved hypothetical protein-putative Fe-S-oxidoreductase [Rhodopirellula baltica SH 1] Length = 371 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 131/373 (35%), Positives = 192/373 (51%), Gaps = 26/373 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K L+ ++L++ L + G R QI +W++ F+ M+D+ ++R L Sbjct: 24 RKNHLLNWSLDQLKDWLQEQG----QKPFRAKQIRRWLFSGRATSFEEMTDLPAKLRAQL 79 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +HF+I S DGT K L+R E+E V + + R ++CVSSQVGC Sbjct: 80 EEHFAIFNATEAVVSKSKDGTEKILVRL-----ADGGEVECVLLRDGPRRSICVSSQVGC 134 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 ++ C FC +G + RNLT EIL Q+L + L ++S+IVM Sbjct: 135 AMGCVFCASGLDGVDRNLTGGEILEQMLRLQQRL---------------PADERLSHIVM 179 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MGMGEPL N V +L +A GL S RRIT+ST G P I ++ I LA+SL Sbjct: 180 MGMGEPLANLPGVLSALDVARSEDGLGISPRRITISTVGLPPAIDKLAAAGIPYNLAVSL 239 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++LR+ LVP+NRK +E ++ A Y S R+TFEYV+L GIND A L Sbjct: 240 HAPNDELRSELVPVNRKIGIEPVLQAADRYFHASGR-RLTFEYVLLGGINDGDEHARQLS 298 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +IL+G +N+IP+NP G Y I F ++ +G + R +G +I AACG Sbjct: 299 QILRGRSVMMNVIPYNPVAGLPYRTPSGAAIARFRAILESAGVNVNFRQRKGDEINAACG 358 Query: 364 QLKSLSKRIPKVP 376 QL+ + Sbjct: 359 QLRRNRGEVKATK 371 >gi|145593878|ref|YP_001158175.1| radical SAM protein [Salinispora tropica CNB-440] gi|145303215|gb|ABP53797.1| radical SAM enzyme, Cfr family [Salinispora tropica CNB-440] Length = 353 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 116/370 (31%), Positives = 179/370 (48%), Gaps = 23/370 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + L + + ++G P R R Q+ + R +RD + M+D+ R Sbjct: 1 MPPRHLADFDLAGRQTLVTELGEP----RFRARQVSTHYFGRLVRDPEQMTDLPAATREK 56 Query: 64 LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L V E DG T K L R + +E+V + R T+C+SSQ Sbjct: 57 LADQLLPTLLTPVRELACDDGATHKALWRLHDGSL-----VESVLMGYPDRVTVCLSSQA 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RNL+ EI+ Q + + ++S + Sbjct: 112 GCGMACPFCATGQAGLTRNLSTAEIVDQAVYL---------AGVAASGAVAGSPPRLSRV 162 Query: 183 VMMGMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239 V MGMGEPL N++ V ++ GL S+R IT+ST G VP I R+ E++ V L Sbjct: 163 VFMGMGEPLANYNRVVAAIRRLVAPSPEGLGLSQRHITVSTVGLVPAIRRLASEDLSVTL 222 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA ++LR+ LVP+N+++ + +++A Y + R++ EY M+K +ND P A Sbjct: 223 ALSLHAPDDELRDELVPVNQRWKVSEVLEAAWEYAARTGR-RVSIEYAMIKDVNDQPWRA 281 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L ++L A +NLIP NP PG + S + F ++ +G S+ +R RG +I Sbjct: 282 DLLGRLLADRLAHVNLIPLNPTPGSRWDASPKPVEREFVRRLRAAGVSTTVRDTRGREID 341 Query: 360 AACGQLKSLS 369 ACGQL + Sbjct: 342 GACGQLAAAE 351 >gi|53712370|ref|YP_098362.1| ribosomal RNA large subunit methyltransferase N [Bacteroides fragilis YCH46] gi|81383319|sp|Q64XE8|RLMN_BACFR RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|52215235|dbj|BAD47828.1| conserved hypothetical protein [Bacteroides fragilis YCH46] Length = 344 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 130/367 (35%), Positives = 194/367 (52%), Gaps = 29/367 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K L+GM EL+ +G+P QI W+Y + + M+++S + R L Sbjct: 1 MPKYPLLGMTLTELQSVTKDLGMPA----FAAKQIASWLYDKKVTSIDEMTNLSLKHREL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L + + VDE S DGT K+L + +E VYIP++ R TLCVSSQVG Sbjct: 57 LKGEYDLGISAPVDEMRSVDGTVKYLYQVSDNHF-----VEAVYIPDEDRATLCVSSQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG Q +LTA +IL Q+ K++N+V Sbjct: 112 CKMNCKFCMTGKQGFTASLTANQILNQIAALPEWD-------------------KLTNVV 152 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N D V K+L I + S G +S +RITLS+ G + R EE LAISL Sbjct: 153 MMGMGEPLDNLDEVLKALHILTASYGYGWSPKRITLSSVGLRKGLQRFIEESECHLAISL 212 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ R+ L+P R + ++ ++D ++Y S RR++FEY++ KG+NDS A L+ Sbjct: 213 HSPFPSQRSELMPAERAFSIKEMVDLLKNY-DFSKQRRLSFEYIVFKGVNDSLIYAKELL 271 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+L+G+ ++NLI F+ PG + + + + +F + + G + IR RG DI AACG Sbjct: 272 KLLRGLDCRVNLIRFHAIPGVDLEGAGMETMTSFRDYLTSHGLFTTIRASRGEDIFAACG 331 Query: 364 QLKSLSK 370 L + + Sbjct: 332 MLSTAKQ 338 >gi|42522317|ref|NP_967697.1| hypothetical protein Bd0733 [Bdellovibrio bacteriovorus HD100] gi|81618236|sp|Q6MPV7|RLMN_BDEBA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|39574848|emb|CAE78690.1| conserved hypothetical protein [Bdellovibrio bacteriovorus HD100] Length = 399 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 133/380 (35%), Positives = 212/380 (55%), Gaps = 26/380 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 + + + E+L+ + G Q R QI+KW+Y + + D + M+++S+E R L Sbjct: 26 QPVNFYSLTLEDLKAYIKSKGKEQ----FRAQQIFKWVYEQRVTDPEQMTNLSKEFRQDL 81 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 S P ++ S DGT+K+L + +E V IP + R TLC+SS+VGC Sbjct: 82 PSMLSFDLPPVLQHLKSVDGTQKFLFDMKD-----GMSVEAVVIPSEDRLTLCISSEVGC 136 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 ++ C FC+TG QKL R L E+I+ Q + L + G++I+NIV Sbjct: 137 NMACKFCFTGKQKLKRRLRTEDIVGQFMQVHDRLAE---------------GQRITNIVF 181 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N + V K++ + G++ S+++IT+STSG VP + RV + V LA+SL+ Sbjct: 182 MGMGEPLDNPEAVFKTIDVIHSPWGINLSRKKITVSTSGIVPEMWRVADA-KVRLAVSLN 240 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 ++++R+ ++PIN+++ + L++AC+ + +S +ITFEYV+LKGI D A L+K Sbjct: 241 GPNDEIRSQVMPINKRWDTKALLEACKEHYRVS-KDKITFEYVLLKGITDQLEHARQLVK 299 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 ++K +P KIN+IPFN PG Y D I F + G +R G DI AACGQ Sbjct: 300 LVKDVPCKINIIPFNEHPGSGYERPDDDTIQAFHTELMNLGAHVLLRRSMGRDIFAACGQ 359 Query: 365 LKSLSKRIPKVPRQEMQITG 384 L ++ +R + ++ G Sbjct: 360 LTTVKERPQTMDISNSRLAG 379 >gi|257125946|ref|YP_003164060.1| radical SAM enzyme, Cfr family [Leptotrichia buccalis C-1013-b] gi|257049885|gb|ACV39069.1| radical SAM enzyme, Cfr family [Leptotrichia buccalis C-1013-b] Length = 372 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 129/372 (34%), Positives = 202/372 (54%), Gaps = 26/372 (6%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 ++ ++K ++GM E L+ ++I R + SQ++ W++ + + +F S+IS++ Sbjct: 17 IDTVEKIDILGMDLESLQRKFVEI----RLKKFNASQVFDWLHNKLVFNFDEFSNISKKD 72 Query: 61 RHLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119 R +L + F + E ++S DG T K+L + + IE+V I K+R TLCVS Sbjct: 73 REILKEKFYVEKLEFKTHQVSEDGDTEKFLFELKDKRL-----IESVLISHKNRHTLCVS 127 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 SQ+GC + C FC T T RNL+ EILLQ + + G K+ Sbjct: 128 SQIGCLIGCDFCATATMTYERNLSISEILLQYYYVQKH--------------LLQRGEKL 173 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVM 238 N+V MGMGEP N+D V S+++ + G +FSKR T+STSG V I R E E + Sbjct: 174 GNVVYMGMGEPFLNYDAVLGSINMLNSPKGQNFSKRNFTISTSGIVNGIKRFTENENQIN 233 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LAISLH+V +D+RN ++PIN+++ ++ L ++ Y + RITFEY+++ +N P D Sbjct: 234 LAISLHSVKDDVRNEIMPINKRWGVKQLKESLLEYQKQT-KNRITFEYILINDLNCEPED 292 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L L +NLIP+NP G Y ++ F + +K + +R +G DI Sbjct: 293 ARELAGFLNSFSCLVNLIPYNPVGGKPYKTPSKQKQREFYKLLKDKNVNVTLRETKGQDI 352 Query: 359 LAACGQLKSLSK 370 AACGQLK+ + Sbjct: 353 AAACGQLKAKKE 364 >gi|213421342|ref|ZP_03354408.1| hypothetical protein Salmonentericaenterica_27889 [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 317 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 137/322 (42%), Positives = 185/322 (57%), Gaps = 22/322 (6%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 +N K +L+ + R+++ E +G R Q+ KW+Y +F M+DI++ + Sbjct: 16 LNNETKINLLDLNRQQMREFFKNLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVL 71 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L + I PE+V+E+ S DGT KW + +ETVYIPE R TLCVSS Sbjct: 72 RGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGD------QRVETVYIPEDDRATLCVSS 125 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC+L C FC T Q RNL EI+ QV A ++G + R I+ Sbjct: 126 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG----------AAKVTGQRPIT 175 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+VMMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LA Sbjct: 176 NVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALA 235 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRD 298 ISLHA ++ +R+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND Sbjct: 236 ISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEH 295 Query: 299 ALNLIKILKGIPAKINLIPFNP 320 A L ++LK P KINLIP+NP Sbjct: 296 AHQLAELLKETPCKINLIPWNP 317 >gi|333024150|ref|ZP_08452214.1| putative cfr family radical SAM enzyme [Streptomyces sp. Tu6071] gi|332744002|gb|EGJ74443.1| putative cfr family radical SAM enzyme [Streptomyces sp. Tu6071] Length = 369 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 126/369 (34%), Positives = 183/369 (49%), Gaps = 25/369 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + E +EA+ IG R Q+ + + R +D +DI R L + Sbjct: 21 RHLADLSPAERKEAVAAIG----EKPFRAKQLSQHYFARYAQDPAQWTDIPAAARGRLQE 76 Query: 67 HFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +V ISCD TRK L R + +E+V + R T+C+SSQ GC Sbjct: 77 ALLPELMSVV-RHISCDDDTTRKTLWRLFDGTL-----VESVLMRYPDRVTMCISSQAGC 130 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+A EI+ Q++ L D IP ++SNIV Sbjct: 131 GMNCPFCATGQAGLDRNLSAAEIVHQIVEGMRALRD---------GEIPGGPARLSNIVF 181 Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 MGMGEPL N++ V ++ +D GL S+R IT+ST G VP I R +E LA+ Sbjct: 182 MGMGEPLANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAIHRFADEGFKCRLAV 241 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++LR+ LVP+N ++ + ++DA Y S R++ EY +++ IND Sbjct: 242 SLHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKSGR-RVSIEYALIRDINDQAWRGDL 300 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++LK +NLIP NP PG ++ S +D F + I G +R RG +I A Sbjct: 301 LGRLLKNKRVHVNLIPLNPTPGSKWTASRPEDERAFVDAIAAHGVPVTVRDTRGQEIDGA 360 Query: 362 CGQLKSLSK 370 CGQL + + Sbjct: 361 CGQLAAAER 369 >gi|283956169|ref|ZP_06373654.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni 1336] gi|283792323|gb|EFC31107.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni 1336] Length = 356 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 141/378 (37%), Positives = 204/378 (53%), Gaps = 42/378 (11%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +++ + EEL E + + R QI++WIY + +F MS + +++R L Q Sbjct: 5 VNILDFLPEELGEKIKPM--------FRVKQIYQWIYQKYANNFSDMSSLPKDLRLELAQ 56 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------------R 113 +F + V + S DG+ K+L + IE+V +P K R Sbjct: 57 NFHFSPVKCVKNEQSKDGSIKYLFELVD-----GLRIESVLLPMKEEKIDAEGKRISHAR 111 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 T+CVSSQVGC CSFC T L RNL+A EI+ Q+L + Sbjct: 112 YTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNI------------- 158 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233 + NIV MGMGEPL N NV K++ I S + GL+ S RR T+STSG I +G+ Sbjct: 159 -PYERRVNIVYMGMGEPLDNLKNVSKAVKILSQNDGLAISPRRQTISTSGLAKQIKELGQ 217 Query: 234 E-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 +GV+LAISLHAV+++LR L+PIN+ Y + ++DA R +P + +R+ FEY+++ GI Sbjct: 218 MNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGI 276 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 ND A L+K+L GI AK+NLI FNP G Y ++ + F + + G + IR Sbjct: 277 NDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCTIRE 336 Query: 353 PRGLDILAACGQLKSLSK 370 +GLDI AACGQLK +K Sbjct: 337 SKGLDISAACGQLKERAK 354 >gi|270296162|ref|ZP_06202362.1| cfr family radical SAM enzyme [Bacteroides sp. D20] gi|317480739|ref|ZP_07939825.1| cfr family radical SAM enzyme [Bacteroides sp. 4_1_36] gi|270273566|gb|EFA19428.1| cfr family radical SAM enzyme [Bacteroides sp. D20] gi|316903080|gb|EFV24948.1| cfr family radical SAM enzyme [Bacteroides sp. 4_1_36] Length = 346 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 130/373 (34%), Positives = 196/373 (52%), Gaps = 29/373 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K L+G+ EL+ + +G+P QI W+Y + + MS++S + R L Sbjct: 1 MQKRPLLGLTLAELQNVVKNLGMPG----FSAKQIASWLYDKKVASIDEMSNLSLKHREL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L + + + VD S DGT K+L R G +E VYIP++ R TLCVSSQVG Sbjct: 57 LKEIYEVGAEAPVDAMRSVDGTVKYLYR-----AGEGHFVEAVYIPDEDRATLCVSSQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG Q NLT+ +I+ Q+ K++N+V Sbjct: 112 CKMNCKFCMTGKQGFTANLTSNQIINQI-------------------SSLPERDKLTNVV 152 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N D V K+L I + S G ++S +R+TLS+ G + R E LAISL Sbjct: 153 MMGMGEPLDNLDEVLKALEIMTASYGYAWSPKRVTLSSVGLKKGLQRFIGESDCHLAISL 212 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ R L+P + + + +++ R+Y S RR++FEY++ KG+NDS A L+ Sbjct: 213 HSPIPLQRRELMPAEKAFSITEIVELLRNY-DFSKQRRLSFEYIVFKGVNDSLPYAKELL 271 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+L+G+ +INLI F+ PG +D + + F + + G + IR+ RG DI AACG Sbjct: 272 KLLRGLDCRINLIRFHAIPGVNLEGADMETMTAFRDYLTSHGLFTTIRSSRGEDIFAACG 331 Query: 364 QLKSLSKRIPKVP 376 L + + K Sbjct: 332 MLSTAKQEENKEE 344 >gi|118602407|ref|YP_903622.1| radical SAM protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|205829871|sp|A1AW44|RLMN_RUTMC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|118567346|gb|ABL02151.1| 23S rRNA m(2)A-2503 methyltransferase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 356 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 151/373 (40%), Positives = 204/373 (54%), Gaps = 24/373 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K++L+ + L + + +G RT QI +WIY DF+ M + S+ +R Sbjct: 1 MNKKNLLSFNQNALNDFFVGLG----EKPYRTKQIMQWIYKDHEFDFEKMLNFSKSLRDE 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L++ + +V + DG KW+L IE +YIPEK+RGTLC+SSQVG Sbjct: 57 LSKVVCVELLRVVKQNFILDGVIKWVLALDKNNH-----IEMIYIPEKNRGTLCISSQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C L C+FC TG Q +NLT EI+ QVL+A + S ++ISN+V Sbjct: 112 CGLACTFCSTGMQGFNKNLTTAEIIAQVLIASRY--------------LNSKTKRISNVV 157 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MGMGEPL N V + + D + S+R++T+STSG VP + R+ E V LA+SL Sbjct: 158 FMGMGEPLLNEHAVYNACDLLLDDLAFGLSRRKVTISTSGVVPAMLRMSERTPVSLAVSL 217 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALNL 302 HA + LRN LVPIN+KY LE L+ AC+ Y +R I FEYVMLKG+NDS A L Sbjct: 218 HASDDHLRNELVPINQKYSLEELLKACKVYLQAGTQKRHILFEYVMLKGVNDSIEHANKL 277 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +K+LKGI AKINLIPFN + +Y S + I F + G + R RG DI AC Sbjct: 278 VKLLKGISAKINLIPFNSFEKTQYQTSSAQTIEKFQNILYHQGIRTMTRRTRGEDIGGAC 337 Query: 363 GQLKSLSKRIPKV 375 GQL K Sbjct: 338 GQLAGKVLDKTKR 350 >gi|327542013|gb|EGF28512.1| ribosomal RNA large subunit methyltransferase N [Rhodopirellula baltica WH47] Length = 365 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 131/373 (35%), Positives = 192/373 (51%), Gaps = 26/373 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K L+ ++L++ L + G R QI +W++ F+ M+D+ ++R L Sbjct: 18 RKNHLLNWSLDQLKDWLQEQG----QKPFRAKQIRRWLFSGRATSFEEMTDLPAKLRAQL 73 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +HF+I S DGT K L+R E+E V + + R ++CVSSQVGC Sbjct: 74 EEHFAIFNATEAVVSKSKDGTEKILVRL-----ADGGEVECVLLRDGPRRSICVSSQVGC 128 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 ++ C FC +G + RNLT EIL Q+L + L ++S+IVM Sbjct: 129 AMGCVFCASGLDGVDRNLTGGEILEQMLRLQQRL---------------PADERLSHIVM 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MGMGEPL N V +L +A GL S RRIT+ST G P I ++ I LA+SL Sbjct: 174 MGMGEPLANLPGVLSALDVARSEDGLGISPRRITISTVGLPPAIDKLAAAGIPYNLAVSL 233 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++LR+ LVP+NRK +E ++ A Y S R+TFEYV+L GIND A L Sbjct: 234 HAPNDELRSELVPVNRKIGIEPVLQAADRYFHASGR-RLTFEYVLLGGINDGDEHARQLS 292 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +IL+G +N+IP+NP G Y I F ++ +G + R +G +I AACG Sbjct: 293 QILRGRSVMMNVIPYNPVAGLPYRTPSGAAIARFRAILESAGVNVNFRQRKGDEINAACG 352 Query: 364 QLKSLSKRIPKVP 376 QL+ + Sbjct: 353 QLRRNRGELKATK 365 >gi|148926804|ref|ZP_01810483.1| hypothetical protein Cj8486_1762 [Campylobacter jejuni subsp. jejuni CG8486] gi|145844529|gb|EDK21636.1| hypothetical protein Cj8486_1762 [Campylobacter jejuni subsp. jejuni CG8486] Length = 356 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 140/378 (37%), Positives = 205/378 (54%), Gaps = 42/378 (11%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +++ + EEL E + + R QI++WIY + +F MS++ +++R L Q Sbjct: 5 VNILDFLPEELGEKIKPM--------FRVKQIYQWIYQKYANNFSDMSNLPKDLRLELAQ 56 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------------R 113 +F + V + S DG+ K+L + IE+V +P K R Sbjct: 57 NFHFSPVKCVKNEQSKDGSIKYLFELVD-----GLRIESVLLPMKEEKIDAEGKRISHAR 111 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 T+CVSSQVGC CSFC T L RNL+A EI+ Q+L + Sbjct: 112 YTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNI------------- 158 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233 + NIV MGMGEPL N NV K++ I + + GL+ S RR T+STSG I +G+ Sbjct: 159 -PYERRVNIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKELGQ 217 Query: 234 E-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 +GV+LAISLHAV+++LR L+PIN+ Y + ++DA R +P + +R+ FEY+++ GI Sbjct: 218 MNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGI 276 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 ND A L+K+L GI AK+NLI FNP G Y ++ + F + + G + IR Sbjct: 277 NDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCTIRE 336 Query: 353 PRGLDILAACGQLKSLSK 370 +GLDI AACGQLK +K Sbjct: 337 SKGLDISAACGQLKERAK 354 >gi|317475867|ref|ZP_07935124.1| cfr family radical SAM enzyme [Bacteroides eggerthii 1_2_48FAA] gi|316908027|gb|EFV29724.1| cfr family radical SAM enzyme [Bacteroides eggerthii 1_2_48FAA] Length = 345 Score = 386 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 130/371 (35%), Positives = 194/371 (52%), Gaps = 29/371 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ L+G+ EL+ + +G+P QI W+Y + + M+++S + R LL Sbjct: 2 KQPLLGLTLTELQAVVKNLGMPG----FAAKQIASWLYGKKVASIDEMTNLSLKHRELLK 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + VD S DGT K+L R +G +E VYIPE+ R TLCVSSQVGC Sbjct: 58 DIYEVGGEAPVDAMRSVDGTVKYLYR-----VGEGHYVEAVYIPEEDRATLCVSSQVGCK 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q NLTA +I+ Q+ K++N+VMM Sbjct: 113 MNCKFCMTGKQGFTGNLTAGQIINQI-------------------NSLPERDKLTNVVMM 153 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N D V K+L + + S G +S +R+TLS+ G + R EE LAISLH+ Sbjct: 154 GMGEPLDNLDEVLKALEVMTASYGYGWSPKRVTLSSVGLRKGLQRFVEESDCHLAISLHS 213 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 R L+P + + + +++ R+Y S RR++FEY++ KG+NDS A L+K+ Sbjct: 214 PVPQQRRELMPAEKAFSITEIVELLRNY-DFSKQRRLSFEYIVFKGVNDSLLYAKELLKL 272 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G+ +INLI F+ PG + +D + + + + G + IR RG DI AACG L Sbjct: 273 LRGLDCRINLIRFHAIPGVDLEGADMETMTALRDYLTSHGLFTTIRASRGEDIFAACGML 332 Query: 366 KSLSKRIPKVP 376 + + K Sbjct: 333 STAKQEGNKEE 343 >gi|305432592|ref|ZP_07401753.1| cfr family radical SAM enzyme [Campylobacter coli JV20] gi|304444303|gb|EFM36955.1| cfr family radical SAM enzyme [Campylobacter coli JV20] Length = 356 Score = 386 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 142/380 (37%), Positives = 205/380 (53%), Gaps = 42/380 (11%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +++ + EELEE + + R QI++WIY + +F MS + +++R L Q Sbjct: 5 INILDFLPEELEEKIKPM--------FRVKQIYQWIYQKYANNFSDMSSLPKDLRLELAQ 56 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------------R 113 + + V + S DG+ K+L + IE+V +P K R Sbjct: 57 TYHFSPLKCVKNEQSKDGSIKYLFEL-----IDGLRIESVLLPMKEEQFDEEGKRISHTR 111 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 T+CVSSQVGC CSFC T L RNL+A EI+ Q+L + Sbjct: 112 YTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNI------------- 158 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233 + NIV MGMGEPL N NV K++ I S + GL+ S RR T+STSG I +GE Sbjct: 159 -PYERRVNIVYMGMGEPLDNLKNVSKAVKILSQNDGLAISPRRQTISTSGLAKQIKELGE 217 Query: 234 E-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 +GV+LAISLHAV+++LR L+PIN+ Y + ++DA R +P + +R+ FEY+++ GI Sbjct: 218 MNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVRAFP-IDQRKRVMFEYLLIDGI 276 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 ND A L+K+L GI AK+NLI FNP G Y ++ + F + + G + IR Sbjct: 277 NDKLEHAKELVKLLNGIKAKVNLILFNPHEGSIYHRPKLENAIKFQDLLSAKGVTCTIRE 336 Query: 353 PRGLDILAACGQLKSLSKRI 372 +GLDI AACGQLK +K + Sbjct: 337 SKGLDISAACGQLKERAKEL 356 >gi|265762562|ref|ZP_06091130.1| ribosomal RNA large subunit methyltransferase N [Bacteroides sp. 2_1_16] gi|263255170|gb|EEZ26516.1| ribosomal RNA large subunit methyltransferase N [Bacteroides sp. 2_1_16] Length = 344 Score = 386 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 130/367 (35%), Positives = 194/367 (52%), Gaps = 29/367 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K L+GM EL+ +G+P QI W+Y + + M+++S + R L Sbjct: 1 MPKYPLLGMTLTELQSVTKDLGMPA----FAAKQIASWLYDKKVTSIDEMTNLSLKHREL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L + + VDE S DGT K+L + +E VYIP++ R TLCVSSQVG Sbjct: 57 LKGEYDLGISAPVDEMRSVDGTVKYLYQVSDNHF-----VEAVYIPDEDRATLCVSSQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG Q +LTA +IL Q+ K++N+V Sbjct: 112 CKMNCKFCMTGKQGFTASLTANQILNQIAALPERD-------------------KLTNVV 152 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N D V K+L I + S G +S +RITLS+ G + R EE LAISL Sbjct: 153 MMGMGEPLDNLDEVLKALHILTASYGYGWSPKRITLSSVGLRKGLQRFIEESECHLAISL 212 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ R+ L+P R + ++ ++D ++Y S RR++FEY++ KG+NDS A L+ Sbjct: 213 HSPFPSQRSELMPAERAFSIKEMVDLLKNY-DFSKQRRLSFEYIVFKGVNDSLIYAKELL 271 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+L+G+ ++NLI F+ PG + + + + +F + + G + IR RG DI AACG Sbjct: 272 KLLRGLDCRVNLIRFHAIPGVDLEGTGMETMTSFRDYLTSHGLFTTIRASRGEDIFAACG 331 Query: 364 QLKSLSK 370 L + + Sbjct: 332 MLSTAKQ 338 >gi|295396359|ref|ZP_06806525.1| cfr family radical SAM enzyme [Brevibacterium mcbrellneri ATCC 49030] gi|294970799|gb|EFG46708.1| cfr family radical SAM enzyme [Brevibacterium mcbrellneri ATCC 49030] Length = 441 Score = 386 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 126/406 (31%), Positives = 188/406 (46%), Gaps = 52/406 (12%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + L + EEL +A+ G+P R Q+ YV D M+D+ + R L Sbjct: 45 QHLADLSLEELTQAVKDKGLPG----FRAKQLATHYYVHNTTDPADMTDLPADQREELAA 100 Query: 67 HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F V + DG T K+L R + +E+V + ++R TLCVSSQ GC Sbjct: 101 EFFPPLLTEVRRLRTEDGDTIKFLWRLFDGAM-----VESVLMRYRNRITLCVSSQCGCG 155 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLG-------------------------- 159 + C FC TG Q L RN++ EI+ QV+ A ++ Sbjct: 156 MNCPFCATGQQGLTRNMSTAEIVDQVIQANRVIAAGELAPTAGATTNYLGEEAAEVGSEA 215 Query: 160 ---------DFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS--DSM 208 G + V +++N+V MGMGEPL N+ V ++ + Sbjct: 216 DASDNSATLQAAGTPETSATTSAGVHDRVTNVVFMGMGEPLANYKRVMNAVRRFTTPAPA 275 Query: 209 GLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267 GL S RRIT+ST G VP I ++ E I V A+SLHA +DLR+ ++P+N ++ + I Sbjct: 276 GLGMSPRRITVSTVGLVPGIKKLAAENIPVTFALSLHAPDDDLRDEMIPVNTRWNADEAI 335 Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--KGIP-AKINLIPFNPWPGC 324 DA Y + RR++ EY ++K +ND A L K L +G +N IP NP PG Sbjct: 336 DAAYDYY-KTTGRRVSIEYALIKDMNDHAWRAELLAKKLNARGRGWVHVNPIPLNPTPGS 394 Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 + S+ + F + ++G + IR RG DI ACGQL + + Sbjct: 395 VWTASEPEVAAEFVRRLVKAGVPTTIRDTRGKDIDGACGQLAAEDE 440 >gi|318056586|ref|ZP_07975309.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp. SA3_actG] gi|318075677|ref|ZP_07983009.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp. SA3_actF] Length = 369 Score = 386 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 125/369 (33%), Positives = 182/369 (49%), Gaps = 25/369 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + E +EA+ IG R Q+ + + R +D +DI R L + Sbjct: 21 RHLADLSPAERKEAVAAIG----EKPFRAKQLSQHYFARYAQDPAQWTDIPAAARGRLQE 76 Query: 67 HFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +V ISCD TRK L R + +E+V + R T+C+SSQ GC Sbjct: 77 ALLPELMSVV-RHISCDDDTTRKTLWRLFDGTL-----VESVLMRYPDRVTMCISSQAGC 130 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EI+ Q++ L D IP ++SNIV Sbjct: 131 GMNCPFCATGQAGLDRNLSTAEIVHQIVEGMRALRD---------GEIPGGPARLSNIVF 181 Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 MGMGEPL N++ V ++ +D GL S+R IT+ST G VP I R +E LA+ Sbjct: 182 MGMGEPLANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAIHRFADEGFKCRLAV 241 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++LR+ LVP+N ++ + ++DA Y S R++ EY +++ IND Sbjct: 242 SLHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKSGR-RVSIEYALIRDINDQAWRGDL 300 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++LK +NLIP NP PG ++ S +D F + I G +R RG +I A Sbjct: 301 LGRLLKNKRVHVNLIPLNPTPGSKWTASRPEDERAFVDAIAAHGVPVTVRDTRGQEIDGA 360 Query: 362 CGQLKSLSK 370 CGQL + + Sbjct: 361 CGQLAAAER 369 >gi|312130260|ref|YP_003997600.1| 23S rRNA m(2)a-2503 methyltransferase [Leadbetterella byssophila DSM 17132] gi|311906806|gb|ADQ17247.1| 23S rRNA m(2)A-2503 methyltransferase [Leadbetterella byssophila DSM 17132] Length = 368 Score = 386 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 125/363 (34%), Positives = 197/363 (54%), Gaps = 24/363 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK+ L + E+L+ L ++G P R QI +W++ + Q M+++S+ +R L Sbjct: 25 KKKDLRKVKWEDLQAWLKQVGEPA----FRAKQIREWLWQKSAWSIQDMTNLSKSLREKL 80 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 F I + + S DGT K + + +E V IP +R T C+SSQVGC Sbjct: 81 EAEFEIRPVTVHTAQYSADGTIKSGFKLYDGHL-----VEGVLIPTDTRMTACISSQVGC 135 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 SLTC FC TG RNL A EI QV+L ++ + + ++NIV Sbjct: 136 SLTCKFCATGYMNRERNLDAAEIYDQVILIKNQAEE-------------RYSQPLTNIVY 182 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MGMGEPL N+ V +S+ + GL++S +RIT+ST+G I ++G++ + LA+SL Sbjct: 183 MGMGEPLLNYAAVLESVERITSPEGLNWSPKRITVSTAGIAKMIKKLGDDGVKFNLALSL 242 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++ RN ++PIN L+ L +A Y +IT EY++ G ND DA L+ Sbjct: 243 HAANDEKRNTIMPINESNSLKNLSEAL-QYFYKKTGNKITLEYIVFHGFNDKIADAKELL 301 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 + +K +P+K+N+I +NP ++ +D + I F++ ++ + + IR RG DI AACG Sbjct: 302 EFVKRVPSKVNIIEYNPISEANFVNADPEAIDKFAKYLEDNRVTVNIRRSRGKDIDAACG 361 Query: 364 QLK 366 QL Sbjct: 362 QLA 364 >gi|27262416|gb|AAN87489.1| florfenicol resistance protein [Heliobacillus mobilis] Length = 360 Score = 386 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 133/371 (35%), Positives = 202/371 (54%), Gaps = 28/371 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K L G++ EE+ + L + G P R QI+KW+ R +R+ M+D+ Q +R + Sbjct: 6 EKTELRGLLPEEMAQTLQEWGHPA----YRGKQIFKWVQSRAVREAAEMTDLPQALRSKI 61 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-----SRGTLCVS 119 + + ++S DGT K+L + + IETV +P + R T+C+S Sbjct: 62 EAERWLRPLALSCCRVSKDGTEKYLWQLADGEL-----IETVLMPYRRSQTRDRVTVCLS 116 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 +Q GC L C FC TG Q RNLTA EI+ QVL G K+ Sbjct: 117 TQAGCPLGCKFCATGQQGFRRNLTAGEIVSQVLDITHRKGQ------------SDPDFKV 164 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238 +N+V MGMGEP N++ V++++ + + G + +RRIT+STSG VP I R E + Sbjct: 165 TNLVFMGMGEPFLNYEQVRRAIELFTHPEGQNIGQRRITVSTSGIVPGIERFARENWEIN 224 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLHA + LR+ +P+NR+YP+E +++ACR Y RR++ EY +++G+ND D Sbjct: 225 LALSLHAADDQLRSQWMPVNRQYPIEKVLNACRRYWEQ-GRRRLSVEYALIEGVNDRLED 283 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L K+ P +N+IP NP D+ +V F + +KR G + IR RG+DI Sbjct: 284 ARQLGKLFTRWPIHLNVIPVNPVTESGARRPDKARMVQFLDELKRQGIDAVIREERGVDI 343 Query: 359 LAACGQLKSLS 369 AACGQL+ + Sbjct: 344 EAACGQLRGAA 354 >gi|260911598|ref|ZP_05918183.1| cfr family radical SAM enzyme [Prevotella sp. oral taxon 472 str. F0295] gi|260634304|gb|EEX52409.1| cfr family radical SAM enzyme [Prevotella sp. oral taxon 472 str. F0295] Length = 355 Score = 386 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 122/365 (33%), Positives = 190/365 (52%), Gaps = 29/365 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K L+G +EL+ + G+P Q+ W+Y + + + M++IS+ R L Sbjct: 5 KIPLLGHTLDELKAIAVDNGLPA----FAGKQMAVWLYDKHVDTIEEMTNISKANREKLA 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 QH+ I + +D + S DGT K+L + +ETVYIP++ R TLCVS QVGC Sbjct: 61 QHYEIGAAKFIDAQYSKDGTIKYLFPTESGKF-----VETVYIPDRDRATLCVSCQVGCK 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q NLTA +IL Q+ K++NIV M Sbjct: 116 MNCLFCQTGKQGFEGNLTARDILNQIYALPEQQ-------------------KLTNIVFM 156 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 G GEP+ N DNV K I + G ++S +RIT+S+ G + R +E +AIS+H Sbjct: 157 GQGEPMDNLDNVLKVTQILTADYGYAWSPKRITVSSVGVKGKLKRFLDESDCHVAISMHT 216 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + R ++P + +E ++ + Y ++ RR++FEY+M G+ND+P A L+K+ Sbjct: 217 PIPEQRASIMPAEKGLSIEEIVQLLKQY-DFTHQRRLSFEYIMFGGLNDTPLHARQLVKL 275 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 ++G+ ++NLI F+ P SD+K + TF + + G + IR RG DI AACG L Sbjct: 276 VEGLDCRVNLIRFHQIPNVNLNNSDEKRMETFRDYLTNHGVFTTIRASRGQDIFAACGLL 335 Query: 366 KSLSK 370 + + Sbjct: 336 STAKQ 340 >gi|86607188|ref|YP_475951.1| ribosomal RNA large subunit methyltransferase N [Synechococcus sp. JA-3-3Ab] gi|123751756|sp|Q2JRQ8|RLMN_SYNJA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|86555730|gb|ABD00688.1| radical SAM enzyme, Cfr family [Synechococcus sp. JA-3-3Ab] Length = 356 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 129/375 (34%), Positives = 185/375 (49%), Gaps = 36/375 (9%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 L+G L++ ++ G P R Q+ W+Y +GIR Q ++ + R L + Sbjct: 7 PLLGQSLAALKDWAVEQGQPA----YRGQQLHTWLYHKGIRSLQEVTVFPKAWREALQE- 61 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 + + ++V S DGT K+LL+ + IETV IP R T+CVSSQVGC + Sbjct: 62 YPVGRSQVVQRIESRDGTVKFLLQLADGEL-----IETVGIPTARRLTVCVSSQVGCPMA 116 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C+FC TG RNL EIL QVL + GR++S++V MGM Sbjct: 117 CNFCATGKMGYRRNLKLHEILDQVLTVQE-----------------DFGRRVSHVVFMGM 159 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAV 246 GEPL N D V +++ + + +R ITLST G I + + ++ + LA+SLHA Sbjct: 160 GEPLLNRDTVVQAIRSLNQD--IGIGQRHITLSTVGVPRQIPWLAQQDLQITLAVSLHAP 217 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 + +LR L+P YPL+ LI CR Y S RI+FEY +L G+ND P A L +L Sbjct: 218 NQELRQQLIPSAAHYPLDALIQDCRDYMLCSGR-RISFEYTLLAGVNDLPIHARQLAHLL 276 Query: 307 K-----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 + G +NLIP+NP +Y + F ++ +R RGLD AA Sbjct: 277 RQASQAGARLHVNLIPYNPIAEADYQRPHPTRVAEFVRLLEEHHVQVSVRQTRGLDSNAA 336 Query: 362 CGQLKSLSKRIPKVP 376 CGQL+ R P Sbjct: 337 CGQLRGSFLRASPEP 351 >gi|295836269|ref|ZP_06823202.1| cfr family radical SAM enzyme [Streptomyces sp. SPB74] gi|197697366|gb|EDY44299.1| cfr family radical SAM enzyme [Streptomyces sp. SPB74] Length = 369 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 125/369 (33%), Positives = 181/369 (49%), Gaps = 25/369 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + E +EA+ IG R Q+ + + R +D +DI R L + Sbjct: 21 RHLADLSPAERKEAVAAIG----EKPFRAKQLSQHYFARYAQDPAQWTDIPAAARGRLQE 76 Query: 67 HFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +V ISCD TRK L R + +E+V + R T+C+SSQ GC Sbjct: 77 ELLPELMSVV-RHISCDDDTTRKTLWRLFDGTL-----VESVLMRYPDRVTMCISSQAGC 130 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EI+ Q++ L D IP ++SNIV Sbjct: 131 GMNCPFCATGQAGLDRNLSTAEIVHQIVEGMRALRD---------GEIPGGPARLSNIVF 181 Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 MGMGEPL N++ V ++ +D GL S+R IT+ST G VP I R +E LA+ Sbjct: 182 MGMGEPLANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAIHRFADEGFKCRLAV 241 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++LR+ LVP+N ++ + ++DA Y S R++ EY +++ IND Sbjct: 242 SLHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKSGR-RVSIEYALIRDINDQAWRGDL 300 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++LK +NLIP NP PG + S +D F + I G +R RG +I A Sbjct: 301 LGRLLKNKRVHVNLIPLNPTPGSRWTASRPEDERAFVDAIAAHGVPVTVRDTRGQEIDGA 360 Query: 362 CGQLKSLSK 370 CGQL + + Sbjct: 361 CGQLAAAER 369 >gi|299141914|ref|ZP_07035049.1| radical SAM enzyme, Cfr family [Prevotella oris C735] gi|298576765|gb|EFI48636.1| radical SAM enzyme, Cfr family [Prevotella oris C735] Length = 348 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 129/374 (34%), Positives = 201/374 (53%), Gaps = 30/374 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K++L+GM EL+EA ++G+P QI KW+Y ++ M++IS+ R L Sbjct: 5 KKALLGMTLNELKEACKQLGMPA----FTGGQIAKWLYTHHVKHIDEMTNISKTNRAKLE 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + ++I E ++ ++S DGT K+L +ETVYIPE R TLCVS QVGC Sbjct: 61 EAYTIGCAEALEAQLSKDGTIKYLF-----PTASGKFVETVYIPENDRATLCVSCQVGCK 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q +LT +IL Q+ + K++NIV M Sbjct: 116 MNCLFCQTGKQGFEGSLTTCDILNQIYSLPEVD-------------------KLTNIVFM 156 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 G GEP+ N DN+ ++ I + G ++S +RIT+S+ G + R EE +AISLH+ Sbjct: 157 GQGEPMDNLDNILRTTEILTADYGWAWSPKRITVSSVGVKNKLKRFIEESDCHVAISLHS 216 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + R L+P + + +++ R+Y S+ RR++FEY++ G+NDS A L+K+ Sbjct: 217 PIAEQRAELMPAQKGMSIAEIVELLRNY-DFSHQRRLSFEYIVFGGVNDSMTHARELVKL 275 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG+ +INLI F+ P +D+K + + + G + IR RG DI AACG L Sbjct: 276 LKGLDCRINLIRFHQIPDVPLHGADEKRMEELRDYLTSHGIFTTIRASRGQDIFAACGLL 335 Query: 366 KSLSKRIPKVPRQE 379 S SK+I ++ ++ Sbjct: 336 -STSKKIGEIRHEQ 348 >gi|282879497|ref|ZP_06288231.1| radical SAM enzyme, Cfr family [Prevotella timonensis CRIS 5C-B1] gi|281306644|gb|EFA98670.1| radical SAM enzyme, Cfr family [Prevotella timonensis CRIS 5C-B1] Length = 350 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 124/372 (33%), Positives = 198/372 (53%), Gaps = 30/372 (8%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 N +KK+ L+GM EL+E + + +P QI KW+Y++ + M+++S+ R Sbjct: 7 NIVKKK-LMGMTLSELQEVVHHLNMPT----FTAGQIAKWLYLQQVTSIDEMTNLSKNNR 61 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 +L + F I + +D + S DGT K+L + + +ETVYIP++ R TLCVSSQ Sbjct: 62 QILQESFEIGCMKPLDAQYSKDGTIKYLFPTASGNL-----VETVYIPDQDRATLCVSSQ 116 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC + C FC TG Q NLT +IL Q+ K++N Sbjct: 117 VGCKMNCLFCQTGKQGFEGNLTYTDILNQIYSL-------------------PEREKLTN 157 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 IV MG GEP+ N DNV ++ I + G ++S +RIT+S+ G + R +E +AI Sbjct: 158 IVFMGQGEPMDNIDNVLRATQILTAPYGYAWSPKRITVSSVGVKGKLKRFLDESDCHVAI 217 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH+ + R L+P + P++ +++ R Y ++ RR++FEY++ G NDS R A Sbjct: 218 SLHSAIPEQRRELMPAEKAMPIQEIVELLREY-DFAHQRRLSFEYIVFDGENDSIRHAQK 276 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 ++++L+G+ ++NLI F+ P +D + F + + G + IR RG DI AA Sbjct: 277 VVELLRGLDCRVNLIRFHQIPNVSLRGTDTATMERFRDYLTSHGIFTTIRASRGQDIFAA 336 Query: 362 CGQLKSLSKRIP 373 CG L + K+ Sbjct: 337 CGLLSTAKKKTT 348 >gi|260905210|ref|ZP_05913532.1| radical SAM enzyme, Cfr family protein [Brevibacterium linens BL2] Length = 410 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 124/402 (30%), Positives = 192/402 (47%), Gaps = 48/402 (11%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K+ L M +E +A+ ++G+P R QI + D + M+D+ +++R L Sbjct: 18 PKQHLADMTMDERIDAVKEMGLPA----FRAKQISTHYFSHYQTDVESMTDLPKDLRADL 73 Query: 65 NQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + F V + +G T K+L R + +E+V + ++R TLCVSSQ G Sbjct: 74 QERFFPHLLTEVRRLRTANGDTIKFLWRLYDGAL-----VESVLMRYRNRVTLCVSSQCG 128 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV-------- 175 C + C FC TG Q L RN++A EI+ QV+ A ++ + Sbjct: 129 CGMNCPFCATGQQGLTRNMSAAEIVEQVIRANQVIAAGELAPAPTSDMPAEGETALGAEA 188 Query: 176 -----------------------GRKISNIVMMGMGEPLCNFDNVKKSLSIASDS--MGL 210 ++SNIV MGMGEPL N+ V ++ + GL Sbjct: 189 DDEQGETSEATVDESGTSTSATGPERVSNIVFMGMGEPLANYKRVMNAVRRFVEPAPQGL 248 Query: 211 SFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 S RRIT+ST G VP I ++ E+I V A+SLHA ++LR+ ++P+N ++ + IDA Sbjct: 249 GMSARRITISTVGLVPGINKLAAEDIPVTFALSLHAPDDELRDEMIPVNTRWKADEAIDA 308 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--KGIP-AKINLIPFNPWPGCEY 326 +Y ++ R++ EY ++K +ND P A L K L +G +N IP NP PG + Sbjct: 309 AYNYYQVTGR-RVSIEYALIKDMNDHPWRAELLAKKLNARGRGWVHVNPIPLNPTPGSVW 367 Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 S+ + F + G + IR RG DI ACGQL + Sbjct: 368 TASEPEVADEFVRRLIDQGIPTTIRDTRGSDIDGACGQLAAA 409 >gi|315639331|ref|ZP_07894493.1| cfr family radical SAM enzyme [Campylobacter upsaliensis JV21] gi|315480657|gb|EFU71299.1| cfr family radical SAM enzyme [Campylobacter upsaliensis JV21] Length = 356 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 139/379 (36%), Positives = 205/379 (54%), Gaps = 42/379 (11%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +++ ++ EEL E + R QI +WIY + DF MS++ + +R L ++ Sbjct: 6 NILDLLPEELNE--------KIQPMFRVKQICQWIYQKYADDFSKMSNLPKNLREELAKN 57 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------------RG 114 + + V E+ S DG+ K+L + IE+V +P K + Sbjct: 58 YHFEPLKCVKEERSKDGSIKYLFELKD-----GLRIESVLLPMKEEKFDGEGKRLSHAKF 112 Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 T+CVSSQVGC CSFC T L RNL+A EI+ Q+L + Sbjct: 113 TICVSSQVGCRSGCSFCLTAKGGLKRNLSAGEIVGQILWIKRQN--------------HI 158 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234 + NIV MGMGEPL N +NV K++ I S + L+ S RR T+STSG I +GE Sbjct: 159 PYERRVNIVYMGMGEPLDNLNNVAKAVRILSHNDTLAISVRRQTISTSGLAKQIKELGEM 218 Query: 235 -IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 +GV+LAISLHAV+++LR+ L+PIN+ Y + ++ A R +P + +++ FEY+++ GIN Sbjct: 219 NLGVLLAISLHAVNDELRSKLMPINKAYNIASVMQAVREFP-IDMRKKVMFEYLLIDGIN 277 Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353 D A L+K+L GI AK+NLI FNP G Y ++ V F + + + G + IR Sbjct: 278 DKIEHAKELVKLLNGIKAKVNLILFNPHQGSIYKRPSLENAVKFQDLLSQKGVTCTIRES 337 Query: 354 RGLDILAACGQLKSLSKRI 372 +GLDI AACGQLK K + Sbjct: 338 KGLDISAACGQLKEREKNL 356 >gi|227539135|ref|ZP_03969184.1| Fe-S-cluster redox protein [Sphingobacterium spiritivorum ATCC 33300] gi|300770634|ref|ZP_07080513.1| cfr family radical SAM enzyme [Sphingobacterium spiritivorum ATCC 33861] gi|227240817|gb|EEI90832.1| Fe-S-cluster redox protein [Sphingobacterium spiritivorum ATCC 33300] gi|300763110|gb|EFK59927.1| cfr family radical SAM enzyme [Sphingobacterium spiritivorum ATCC 33861] Length = 352 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 127/365 (34%), Positives = 197/365 (53%), Gaps = 24/365 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + + ++L++ L+++G R QI++W++ + DF MS++S+ +R L Sbjct: 8 IDIRSLTLDQLKQKLVEMG----EQGFRAKQIYEWLWQKSCTDFDEMSNLSKALRDTLKA 63 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 +F+I + + ++S D T K + IE V IP R T CVSSQVGCSL Sbjct: 64 NFAINAVTVKESQVSSDRTIKSSFWLYDNNV-----IEGVLIPTTDRMTACVSSQVGCSL 118 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 TC FC TG RNL A+EI QV+L + G+ ++NIV MG Sbjct: 119 TCKFCATGYMDRKRNLNADEIYDQVVLISKQAEE-------------KYGQPLTNIVYMG 165 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 MGEPL N+ N+ KS+ + GL+ + +RIT+ST+G I ++G++ + LA+SLHA Sbjct: 166 MGEPLLNYANMMKSVERITSPDGLNMAAKRITVSTAGIAKMIKKLGDDGVKFNLALSLHA 225 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ RN ++PIN + L+ L +A + Y L ITFEY++ ND DA L + Sbjct: 226 ANDQKRNEIMPINEQNTLKALAEALK-YFYLKTKSPITFEYIVFNNFNDELEDAKELARF 284 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 K +P+K+NLI +NP ++ +D I F+E ++ G + +R RG DI AACGQL Sbjct: 285 CKHVPSKVNLIEYNPISLADFTNADADKIDVFAEYLRSQGIITNVRRSRGKDIDAACGQL 344 Query: 366 KSLSK 370 + Sbjct: 345 AIKEE 349 >gi|188995920|ref|YP_001930172.1| hypothetical protein PGN_2057 [Porphyromonas gingivalis ATCC 33277] gi|259491992|sp|B2RMI0|RLMN_PORG3 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|188595600|dbj|BAG34575.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC 33277] Length = 352 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 136/363 (37%), Positives = 192/363 (52%), Gaps = 30/363 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK L+GM EEL L++G+P R Q+ +WIYVR DF M++ISQ R L Sbjct: 9 KKVVLLGMSLEELTTVALRMGMP----RFAGKQLAEWIYVRRATDFAEMTNISQANRQKL 64 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + + + D + S DGT+K+L +G +E+V IPE R TLC+SSQVGC Sbjct: 65 AEIYDLGRYPWSDVQCSVDGTKKYLF-----PVGEGRFVESVLIPEGDRATLCISSQVGC 119 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG Q NL+A EIL Q+ +++N+V Sbjct: 120 KMDCLFCMTGKQGWNGNLSAAEILNQIFSV-------------------DEAAELTNLVY 160 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N D V +S+ ++ G+ +S +RIT+ST G + R E LA+SLH Sbjct: 161 MGMGEPLDNTDEVLRSIEALTEPWGMGWSPKRITVSTIG-AKGLERFLAESRCHLAVSLH 219 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 + + R L+P + +P+ +D R Y S RR++FEY++ G+ND R A L Sbjct: 220 SPFPEERRKLMPGEKAFPIMQTLDRIRAY-DFSGQRRVSFEYIVFDGLNDDMRHADELAA 278 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 IL+GIP +INLI F+ P SD + F + ++ GY+ IR RG DI AACG Sbjct: 279 ILRGIPCRINLIRFHKIPAVSLRSSDTARMEAFRKRMESHGYTCTIRASRGEDIFAACGM 338 Query: 365 LKS 367 L + Sbjct: 339 LST 341 >gi|313680864|ref|YP_004058603.1| 23S rRNA m(2)a-2503 methyltransferase [Oceanithermus profundus DSM 14977] gi|313153579|gb|ADR37430.1| 23S rRNA m(2)A-2503 methyltransferase [Oceanithermus profundus DSM 14977] Length = 370 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 130/337 (38%), Positives = 183/337 (54%), Gaps = 21/337 (6%) Query: 31 VRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLL 90 R QI W+Y +G R+F+ M+D+ + +R L Q + I +V S DG+ K+L Sbjct: 50 KGYRKGQIASWLYKKGAREFEEMTDLPRRLREALEQDWRISEFALVQAFPSSDGSVKYLF 109 Query: 91 RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQ 150 E VY+P R T+C+SSQVGC C+FC TG RNLT EIL Q Sbjct: 110 TLHD-----GRRTEAVYLPYADRKTVCISSQVGCPAGCTFCATGKMGFGRNLTGPEILDQ 164 Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210 +L G P R+I N+V+MGMGEPL N++N+ ++ D L Sbjct: 165 ILAVAYHQGLGP--------------REIRNVVLMGMGEPLLNYENIAWAVRRMLDKNAL 210 Query: 211 SFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 + S RRITLST G I R+ E ++GV LA+SLHA ++ R ++P +Y + +++A Sbjct: 211 AMSPRRITLSTVGIPGGIRRLAEGDLGVKLALSLHAPDDETRRRIIPTAHRYSIAEIMEA 270 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 R Y + R+T EY ML+ +ND A L +ILKG+ A +NLIPFNPW G S Sbjct: 271 VRAYFDRTKR-RVTIEYTMLRDVNDREEQARELARILKGLVAHVNLIPFNPWEGAPVAGS 329 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +K I F+ ++R G +R RG+D+ AACGQL Sbjct: 330 GKKRIQRFAAVLEREGVPVTVRWSRGVDVGAACGQLA 366 >gi|301162076|emb|CBW21620.1| conserved hypothetical protein [Bacteroides fragilis 638R] Length = 344 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 130/367 (35%), Positives = 194/367 (52%), Gaps = 29/367 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K L+GM EL+ +G+P QI W+Y + + M+++S + R L Sbjct: 1 MPKYPLLGMTLTELQSVTKDLGMPA----FAAKQIASWLYDKKVTSIDEMTNLSLKHREL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L + + VDE S DGT K+L + +E VYIP++ R TLCVSSQVG Sbjct: 57 LKGEYDLGISAPVDEMRSVDGTVKYLYQVSDNHF-----VEAVYIPDEDRATLCVSSQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG Q +LTA +IL Q+ K++N+V Sbjct: 112 CKMNCKFCMTGKQGFTASLTANQILNQIAALPERD-------------------KLTNVV 152 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N D V K+L I + S G +S +RITLS+ G + R EE LAISL Sbjct: 153 MMGMGEPLDNLDEVLKALHILTASYGYGWSPKRITLSSVGLRKGLQRFIEESECHLAISL 212 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ R+ L+P R + ++ ++D ++Y S RR++FEY++ KG+NDS A L+ Sbjct: 213 HSPFPSQRSELMPAERAFSIKEMVDLLKNY-DFSKQRRLSFEYIVFKGVNDSLIYAKELL 271 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+L+G+ ++NLI F+ PG + + + + +F + + G + IR RG DI AACG Sbjct: 272 KLLRGLDCRVNLIRFHAIPGVDLEGAGMEAMTSFRDYLTSHGLFTTIRASRGEDIFAACG 331 Query: 364 QLKSLSK 370 L + + Sbjct: 332 MLSTAKQ 338 >gi|237727504|ref|ZP_04557985.1| ribosomal RNA large subunit methyltransferase N [Bacteroides sp. D4] gi|229434360|gb|EEO44437.1| ribosomal RNA large subunit methyltransferase N [Bacteroides dorei 5_1_36/D4] Length = 349 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 126/370 (34%), Positives = 192/370 (51%), Gaps = 29/370 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K +L+G +E+++ + +G+P + QI W+Y + + M+++S + R L Sbjct: 4 PKTALLGRTLDEIQQIVRNLGMP----KFAAKQITSWLYDKKVETIDEMTNLSLKHRETL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + + + V+E S DGT K+L R PA IE VYIP++ R TLCVSSQVGC Sbjct: 60 KEGYEVGASAPVEEMRSVDGTVKYLFRTPAHNF-----IEAVYIPDEDRATLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG Q NL+A +IL Q+ K++N+V Sbjct: 115 KMNCKFCMTGKQGFTANLSAHQILNQIYSI-------------------PEREKLTNLVF 155 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEP N D V K L I + G +S +RIT+S+ G + R E LAIS+H Sbjct: 156 MGMGEPFDNLDEVLKVLEILTSEYGYGWSPKRITVSSVGLKKGLERFLNESDCHLAISMH 215 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 R L+P + + + +ID +Y S RR++FEY++ KG+NDS A ++K Sbjct: 216 TPIPSQRRDLMPAEKAFSITEIIDILHNY-DFSKQRRLSFEYIVFKGVNDSLIYAKEIVK 274 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L+GI ++NLI F+ P + D + +V F + + + G + IR RG DI AACG Sbjct: 275 LLRGIECRVNLIRFHAIPNVDLEGVDMETMVAFRDYLTQHGVFATIRASRGEDIFAACGM 334 Query: 365 LKSLSKRIPK 374 L + ++ K Sbjct: 335 LSTAKQQKEK 344 >gi|57504577|ref|ZP_00370689.1| radical SAM enzyme, Cfr family [Campylobacter coli RM2228] gi|57019472|gb|EAL56166.1| radical SAM enzyme, Cfr family [Campylobacter coli RM2228] Length = 356 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 141/380 (37%), Positives = 205/380 (53%), Gaps = 42/380 (11%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +++ + EELEE + + R QI++WIY + +F MS + +++R L Q Sbjct: 5 INILDFLPEELEEKIKPM--------FRVKQIYQWIYQKYANNFSDMSSLPKDLRLELAQ 56 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------------R 113 + + V + S DG+ K+L + IE+V +P K R Sbjct: 57 TYHFSPLKCVKNEQSKDGSIKYLFEL-----IDGLRIESVLLPMKEEQFDEEGKRISHTR 111 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 ++CVSSQVGC CSFC T L RNL+A EI+ Q+L + Sbjct: 112 YSICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNI------------- 158 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233 + NIV MGMGEPL N NV K++ I S + GL+ S RR T+STSG I +GE Sbjct: 159 -PYERRVNIVYMGMGEPLDNLKNVSKAVKILSQNDGLAISPRRQTISTSGLAKQIKELGE 217 Query: 234 E-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 +GV+LAISLHAV+++LR L+PIN+ Y + ++DA R +P + +R+ FEY+++ GI Sbjct: 218 MNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVRAFP-IDQRKRVMFEYLLIDGI 276 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 ND A L+K+L GI AK+NLI FNP G Y ++ + F + + G + IR Sbjct: 277 NDKLEHAKELVKLLNGIKAKVNLILFNPHEGSIYHRPKLENAIKFQDLLSAKGVTCTIRE 336 Query: 353 PRGLDILAACGQLKSLSKRI 372 +GLDI AACGQLK +K + Sbjct: 337 SKGLDISAACGQLKERAKEL 356 >gi|225010483|ref|ZP_03700954.1| radical SAM enzyme, Cfr family [Flavobacteria bacterium MS024-3C] gi|225005312|gb|EEG43263.1| radical SAM enzyme, Cfr family [Flavobacteria bacterium MS024-3C] Length = 353 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 129/365 (35%), Positives = 196/365 (53%), Gaps = 24/365 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ + + +E L + G R +Q+++W++ +G F+ M++IS+E R L Sbjct: 7 KKDIRALDKEALRTFFVTQGQSA----FRGNQVYEWLWQKGAHSFESMTNISKETRAFLE 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 HF I + + + S DGT K +R + +E+V IP K+R T CVSSQVGCS Sbjct: 63 THFVINHIRVDQMQRSNDGTIKNAVRLHDNLV-----VESVLIPTKTRTTACVSSQVGCS 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC T K +RNL +EI QV+ I+ R +SNIV M Sbjct: 118 LDCKFCATSRLKRMRNLQPDEIYDQVVA-------------IDQQSRLYFNRPLSNIVFM 164 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 GMGEPL N++NV K++ +D GL+ S +RI +STSG I ++ E+ + LA+SLH Sbjct: 165 GMGEPLMNYNNVLKAIEKITDPEGLAMSPKRIIVSTSGVPKMIRKMAEDGVKFKLAVSLH 224 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 + + +R ++P N +PL L +A + + + RIT+EYV+ KGIND+ L++ Sbjct: 225 SAIDSVRTTIMPFNETFPLAQLREALQFWYEKT-KSRITYEYVVWKGINDNKAAIDALVE 283 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 K PAK+NLI +NP + + Q I + ++R + +R RG DI AACGQ Sbjct: 284 FCKFAPAKVNLIEYNPIDDGMFSQASQAAIDAYVNTLERHNITCTVRRSRGKDIDAACGQ 343 Query: 365 LKSLS 369 L + Sbjct: 344 LANKQ 348 >gi|307722066|ref|YP_003893206.1| 23S rRNA m(2)A-2503 methyltransferase [Sulfurimonas autotrophica DSM 16294] gi|306980159|gb|ADN10194.1| 23S rRNA m(2)A-2503 methyltransferase [Sulfurimonas autotrophica DSM 16294] Length = 364 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 132/379 (34%), Positives = 208/379 (54%), Gaps = 42/379 (11%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+SL+ ++EL E + R QI+ W+Y + +DF M +I + ++ L+ Sbjct: 5 KQSLLDFTQKELTELVK--------PSFRAKQIYGWMYHQYAQDFDAMKNIPKAMKEELS 56 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS------------- 112 Q + + +IV ++ S DGT K+L +E V++ K Sbjct: 57 QKYIVNPLKIVRKEESSDGTIKYLFELQD-----GKTVEAVWLKMKDAQIDENGEIIQEA 111 Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172 + T+CVS+QVGC + CSFC T R+L+A EI+ QV+ + Sbjct: 112 KYTICVSTQVGCKVGCSFCLTAKGGFTRDLSAGEIVAQVVNLKRDNAH------------ 159 Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232 + NIV MGMGEPL N +N+ K++ I + GL+ S +R T+STSG I ++G Sbjct: 160 --KHNRKINIVYMGMGEPLDNLENLAKAIEIFKEEEGLAISGKRQTVSTSGLSNKIDKLG 217 Query: 233 E-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291 + ++GV +AISLHAV ++LR L+P+N+ + + +I+A + +P + +R+ FEY+++K Sbjct: 218 KMDLGVHIAISLHAVDDELRTELIPMNKAHNINSIIEAVKRFP-IDTRKRVMFEYLVIKN 276 Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351 ND A L+K+L GI AK+NLI FNP+PG Y ++D+V F E + G S IR Sbjct: 277 KNDDLGSAKKLVKLLSGIKAKVNLIYFNPYPGTPYERPSREDMVKFQEYLINHGLLSTIR 336 Query: 352 TPRGLDILAACGQLKSLSK 370 +G+DI AACGQLK ++ Sbjct: 337 DSKGIDISAACGQLKEKNQ 355 >gi|171909569|ref|ZP_02925039.1| YloN [Verrucomicrobium spinosum DSM 4136] Length = 390 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 126/373 (33%), Positives = 193/373 (51%), Gaps = 36/373 (9%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 SL+G+ EL L ++G R Q+ +W++ + + F MS++S+ ++ L Sbjct: 24 PSLLGLQTAELGAILTELG----EKPYRVKQVQEWVFQKRVESFDAMSNLSKPLQEALAT 79 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP--------EKSRGTLCV 118 ++ + S D TRK+L + IETV IP R TLCV Sbjct: 80 RLTLRSMTYARVEGSEDTTRKFLFKLYDGRF-----IETVLIPASPSLYGERSDRRTLCV 134 Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 SSQVGC+ C FC +G RNLTA EI+ Q+L L G + Sbjct: 135 SSQVGCAYDCKFCASGLAGFTRNLTAGEIVEQILQVEKLAG-----------------AR 177 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGV 237 + N+V MGMGEPL N NV +++ + + G++ R +T+STSG P I ++ + + V Sbjct: 178 VDNLVFMGMGEPLANLTNVMRAIEVLNAQWGVNIGARHMTVSTSGLAPQIHKLADFPLQV 237 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 LAISLH SN++RN ++P+NRKYPLE L A Y +R+TFE++++ G+NDS Sbjct: 238 RLAISLHGASNEVRNQIMPVNRKYPLEELFPAL-EYWNSKKKQRLTFEFILIDGVNDSLE 296 Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 A L + + AK+NLIP+N G ++ ++ TF + + + +R +G D Sbjct: 297 QARLLGEHASRLDAKVNLIPYNTVEGLQWKRPSERRQDTFRDIVASHDVMTTLRREKGHD 356 Query: 358 ILAACGQLKSLSK 370 I AACGQL+ + Sbjct: 357 IAAACGQLRLKQE 369 >gi|281426132|ref|ZP_06257045.1| radical SAM enzyme, Cfr family [Prevotella oris F0302] gi|281399708|gb|EFB30539.1| radical SAM enzyme, Cfr family [Prevotella oris F0302] Length = 348 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 128/374 (34%), Positives = 200/374 (53%), Gaps = 30/374 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K++L+GM EL+EA ++G+P QI KW+Y ++ M++IS+ R L Sbjct: 5 KKALLGMTLNELKEACKQLGMPA----FTGGQIAKWLYTHHVKHIDEMTNISKTNRAKLE 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + ++I E ++ + S DGT K+L +ETVYIPE R TLCVS QVGC Sbjct: 61 EAYTIGCAEALEAQHSKDGTIKYLF-----PTASGKFVETVYIPENDRATLCVSCQVGCK 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q +LT +IL Q+ + K++NIV M Sbjct: 116 MNCLFCQTGKQGFEGSLTTCDILNQIYSLPEVD-------------------KLTNIVFM 156 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 G GEP+ N DN+ ++ I + G ++S +RIT+S+ G + R EE +AISLH+ Sbjct: 157 GQGEPMDNLDNILRTTEILTADYGWAWSPKRITVSSVGVKNKLKRFIEESDCHVAISLHS 216 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + R L+P + + +++ R+Y S+ RR++FEY++ G+NDS A L+++ Sbjct: 217 PIAEQRAELMPAQKGMSIAEIVELLRNY-DFSHQRRLSFEYIVFGGVNDSMTHARELVRL 275 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG+ +INLI F+ P +D+K + + + G + IR RG DI AACG L Sbjct: 276 LKGLDCRINLIRFHQIPDVPLHGADEKRMEELRDYLTSHGIFTTIRASRGQDIFAACGLL 335 Query: 366 KSLSKRIPKVPRQE 379 S SK+I ++ ++ Sbjct: 336 -STSKKIGEIRHEQ 348 >gi|150005131|ref|YP_001299875.1| ribosomal RNA large subunit methyltransferase N [Bacteroides vulgatus ATCC 8482] gi|254883266|ref|ZP_05255976.1| 23S rRNA methyltransferase [Bacteroides sp. 4_3_47FAA] gi|294778942|ref|ZP_06744358.1| radical SAM enzyme, Cfr family [Bacteroides vulgatus PC510] gi|319642641|ref|ZP_07997287.1| cfr family radical SAM enzyme [Bacteroides sp. 3_1_40A] gi|205829665|sp|A6L3I9|RLMN_BACV8 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|149933555|gb|ABR40253.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482] gi|254836059|gb|EET16368.1| 23S rRNA methyltransferase [Bacteroides sp. 4_3_47FAA] gi|294447251|gb|EFG15835.1| radical SAM enzyme, Cfr family [Bacteroides vulgatus PC510] gi|317385729|gb|EFV66662.1| cfr family radical SAM enzyme [Bacteroides sp. 3_1_40A] Length = 349 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 126/370 (34%), Positives = 192/370 (51%), Gaps = 29/370 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K +L+G +E+++ + +G+P + QI W+Y + + M+++S + R L Sbjct: 4 PKTALLGRTLDEIQQIVRNLGMP----KFAAKQITSWLYDKKVETIDEMTNLSLKHREAL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + + + V+E S DGT K+L R PA IE VYIP++ R TLCVSSQVGC Sbjct: 60 KEGYEVGASAPVEEMRSVDGTVKYLFRTPAHNF-----IEAVYIPDEDRATLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG Q NL+A +IL Q+ K++N+V Sbjct: 115 KMNCKFCMTGKQGFTANLSAHQILNQIYSI-------------------PEREKLTNLVF 155 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEP N D V K L I + G +S +RIT+S+ G + R E LAIS+H Sbjct: 156 MGMGEPFDNLDEVLKVLEILTSEYGYGWSPKRITVSSVGLKKGLERFLNESDCHLAISMH 215 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 R L+P + + + +ID +Y S RR++FEY++ KG+NDS A ++K Sbjct: 216 TPIPSQRRDLMPAEKAFSITEIIDILHNY-DFSKQRRLSFEYIVFKGVNDSLIYAKEIVK 274 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L+GI ++NLI F+ P + D + +V F + + + G + IR RG DI AACG Sbjct: 275 LLRGIECRVNLIRFHAIPNVDLEGVDMETMVAFRDYLTQHGVFATIRASRGEDIFAACGM 334 Query: 365 LKSLSKRIPK 374 L + ++ K Sbjct: 335 LSTAKQQKEK 344 >gi|237711138|ref|ZP_04541619.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|265750725|ref|ZP_06086788.1| cfr family radical SAM enzyme [Bacteroides sp. 3_1_33FAA] gi|229454982|gb|EEO60703.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|263237621|gb|EEZ23071.1| cfr family radical SAM enzyme [Bacteroides sp. 3_1_33FAA] Length = 349 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 127/370 (34%), Positives = 192/370 (51%), Gaps = 29/370 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K +L+G +E+++ + +G+P + QI W+Y + + M+++S + R L Sbjct: 4 PKTALLGRTLDEIQQIVRNLGMP----KFAAKQIASWLYDKKVETIDEMTNLSLKHREAL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + + + V+E S DGT K+L R P R IE VYIP++ R TLCVSSQVGC Sbjct: 60 KEGYEVGASAPVEEMRSVDGTVKYLFRTPTRNF-----IEAVYIPDEDRATLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG Q NLTA +IL Q+ K++N+V Sbjct: 115 KMNCKFCMTGKQGFTANLTANQILNQIYSI-------------------PEREKLTNLVF 155 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEP N D V K L I + G +S +RIT+S+ G + R E LAIS+H Sbjct: 156 MGMGEPFDNLDEVLKVLEILTSEYGYGWSPKRITVSSVGLKKGLERFLNESDCHLAISMH 215 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 R L+P + + + +ID +Y S RR++FEY++ KG+NDS A ++K Sbjct: 216 TPIPSQRRDLMPAEKAFSITEIIDILHNY-DFSKQRRLSFEYIVFKGVNDSLIYAKEIVK 274 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L+GI ++NLI F+ P + D + + TF + + + G + IR RG DI AACG Sbjct: 275 LLRGIECRVNLIRFHAIPDVDLEGVDMEAMTTFRDYLTQHGVFATIRASRGEDIFAACGM 334 Query: 365 LKSLSKRIPK 374 L + ++ K Sbjct: 335 LSTAKQQKEK 344 >gi|315919828|ref|ZP_07916068.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313693703|gb|EFS30538.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 344 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 132/367 (35%), Positives = 199/367 (54%), Gaps = 29/367 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K L+GM EL+ ++G+P QI W+Y + + M+++S + R L Sbjct: 1 MSKYPLLGMTLVELQSLAKRLGMPG----FTAKQIVSWLYEKKVASIDEMTNLSLKHREL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L Q++ + VDE S DGT K+L + +G +E+VYIP+ R TLCVSSQVG Sbjct: 57 LKQNYEVGAAAPVDEMRSVDGTVKYLYK-----VGENHFVESVYIPDDDRATLCVSSQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG Q NLTA +I+ Q+ K++N+V Sbjct: 112 CKMNCKFCMTGKQGYTANLTASQIINQI-------------------HSLPERDKLTNVV 152 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N D V K+L + + + G ++S +RITLST G + R EE LAISL Sbjct: 153 MMGMGEPLDNLDEVLKALELLTANYGYAWSPKRITLSTVGLRKGLQRFIEENDCHLAISL 212 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ R+ L+P R Y + +++ ++Y S RR++FEY++ KG+NDS A L+ Sbjct: 213 HSPLTAQRSELMPAERAYSITEMVELLKNY-DFSKQRRLSFEYIVFKGLNDSQVYAKELL 271 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+L+G+ ++NLI F+ PG + +D + F + + G + IR+ RG DI AACG Sbjct: 272 KLLRGLDCRVNLIRFHAIPGVDLEGADMDTMTRFRDYLTSHGLFTTIRSSRGEDIFAACG 331 Query: 364 QLKSLSK 370 L + + Sbjct: 332 MLSTAKQ 338 >gi|60680539|ref|YP_210683.1| ribosomal RNA large subunit methyltransferase N [Bacteroides fragilis NCTC 9343] gi|253563593|ref|ZP_04841050.1| ribosomal RNA large subunit methyltransferase N [Bacteroides sp. 3_2_5] gi|81316392|sp|Q5LGK5|RLMN_BACFN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|60491973|emb|CAH06734.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343] gi|251947369|gb|EES87651.1| ribosomal RNA large subunit methyltransferase N [Bacteroides sp. 3_2_5] Length = 344 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 130/367 (35%), Positives = 194/367 (52%), Gaps = 29/367 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K L+GM EL+ +G+P QI W+Y + + M+++S + R L Sbjct: 1 MPKYPLLGMTLTELQSVTKDLGMPA----FAAKQIASWLYDKKVTSIDEMTNLSLKHREL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L + + VDE S DGT K+L + +E VYIP++ R TLCVSSQVG Sbjct: 57 LKGEYDLGISAPVDEMRSVDGTVKYLYQVSDNHF-----VEAVYIPDEDRATLCVSSQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG Q +LTA +IL Q+ K++N+V Sbjct: 112 CKMNCKFCMTGKQGFTASLTANQILNQIAALPERD-------------------KLTNVV 152 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N D V K+L I + S G +S +RITLS+ G + R EE LAISL Sbjct: 153 MMGMGEPLDNLDEVLKALHILTASYGYGWSPKRITLSSVGLRKGLQRFIEESECHLAISL 212 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ R+ L+P R + ++ ++D ++Y S RR++FEY++ KG+NDS A L+ Sbjct: 213 HSPFPSQRSELMPAERAFSIKEMVDLLKNY-DFSKQRRLSFEYIVFKGVNDSLIYAKELL 271 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+L+G+ ++NLI F+ PG + + + + +F + + G + IR RG DI AACG Sbjct: 272 KLLRGLDCRVNLIRFHAIPGVDLEGAGMETMTSFRDYLTSHGLFTTIRASRGEDIFAACG 331 Query: 364 QLKSLSK 370 L + + Sbjct: 332 MLSTAKQ 338 >gi|15644462|ref|NP_229514.1| ribosomal RNA large subunit methyltransferase N [Thermotoga maritima MSB8] gi|81553682|sp|Q9X240|RLMN_THEMA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|4982292|gb|AAD36781.1|AE001811_1 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 343 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 131/369 (35%), Positives = 203/369 (55%), Gaps = 30/369 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++L+ + EEL + +G+ R R QI W++ + + +F M+++S++ R LL + Sbjct: 2 KNLLDLSYEELVTEITNLGLE----RYRADQILDWVFDKKVNNFDEMTNLSKKHRALLKE 57 Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 HFSI + +++D+K+S DGT K+L IE+V + R T C+S+QVGC Sbjct: 58 HFSISFLKLLDKKVSRIDGTTKFLWELED-----GNTIESVMLFHPDRITACISTQVGCP 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG VRNLT EI+ Q+L +KI N+V M Sbjct: 113 VKCIFCATGMSGFVRNLTTGEIVAQILSMEK-----------------EEKKKIGNVVYM 155 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 GMGEPL N++N KS+ I + + RRIT+ST G I ++ EE + V LA+SLH Sbjct: 156 GMGEPLLNYENTIKSIRILNHKKMGNIGIRRITISTVGIPDRIIQLAEEGLDVKLALSLH 215 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N R+ LVP+N+KY +E +++A + Y + R+T EYV+++GIND DA L + Sbjct: 216 APTNFKRDQLVPLNKKYSIEEILNAVKIYQRKT-GNRVTIEYVLIRGINDEISDAKKLAE 274 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 IL+ + +NLIP NP ++ ++TF + +G + IR +G DI AACGQ Sbjct: 275 ILRNMKVFVNLIPVNPTVE-GLRRPSRERLLTFKRILLENGIEAEIRREKGTDIEAACGQ 333 Query: 365 LKSLSKRIP 373 L+ + Sbjct: 334 LRLKRIKSR 342 >gi|257065510|ref|YP_003145182.1| radical SAM enzyme, Cfr family [Slackia heliotrinireducens DSM 20476] gi|256793163|gb|ACV23833.1| radical SAM enzyme, Cfr family [Slackia heliotrinireducens DSM 20476] Length = 344 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 117/364 (32%), Positives = 184/364 (50%), Gaps = 28/364 (7%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 + + ++++ + L ++ P R Q+ +WIY RG + M+++S+ +R L++ Sbjct: 8 IKALSQQQIVDLLAEMEQPA----FRAKQLVQWIYGRGASTYDEMTNLSKALRQELSEKA 63 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 + EI+D+++S DGTRK++++F +E V +P + R T+C S+QVGC + C Sbjct: 64 PLRTAEIIDKQVSKDGTRKYVVQFYD-----GAAVEMVAMPYEDRMTVCFSTQVGCPMAC 118 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 SFC TG + RNL E+L Q+++A + R++SN+V MG G Sbjct: 119 SFCATGKEGFTRNLLPGEMLDQIIIAEK-----------------DMNRRVSNLVGMGQG 161 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVS 247 EPL N+DNV +L A+ G R IT+ST G + I E LA+SLH+ Sbjct: 162 EPLLNYDNVMAALRFANSKDGRGIGARHITISTCGILKGIDDFSREKEQFTLAVSLHSAI 221 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 + R+ L+P PL L A + Y + R T EY+M+ G ND L+ Sbjct: 222 QETRDELMPKVANQPLFRLKSALQTYVKRTGR-RATLEYIMINGYNDDDDHLDALVDFCD 280 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 + +NLIP N G + S +K F + SG + +R RG DI ACGQLK+ Sbjct: 281 DLLCHVNLIPLNNIEGSPWQPSSKKQTQKFLNVLNASGTEATLRDSRGADIDGACGQLKN 340 Query: 368 LSKR 371 K+ Sbjct: 341 KRKQ 344 >gi|124007524|ref|ZP_01692229.1| radical SAM enzyme, Cfr family [Microscilla marina ATCC 23134] gi|123987007|gb|EAY26763.1| radical SAM enzyme, Cfr family [Microscilla marina ATCC 23134] Length = 350 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 124/368 (33%), Positives = 194/368 (52%), Gaps = 24/368 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K+ + ++ L G R QI+ W++ + F+ M+++S ++R +L Sbjct: 6 QKQDIRKFSVADISSFLASKG----EKAFRAKQIYAWLWQKSANSFEEMTNLSLKLREML 61 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 HF I + ++IS D T K + I IE V IP K R T CVSSQVGC Sbjct: 62 QAHFDITALTVDQQQISNDQTIKSTFKLYDNHI-----IEGVLIPAKDRMTACVSSQVGC 116 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 SLTC FC TG RNL EI QV+ + + + ++NIV Sbjct: 117 SLTCKFCATGYMSRKRNLEPGEIYDQVVAIARQAEE-------------NYEQPLTNIVY 163 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243 MGMGEPL N+ NV KS+ + GL+ S +RIT+ST+G I ++G+ E+ LA+SL Sbjct: 164 MGMGEPLLNYANVLKSVEHITSPEGLNMSPKRITISTAGIAKMIRKLGDDEVKFNLALSL 223 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +++ RN ++PIN L L DA ++Y + R+T+EY++ NDS +DA L Sbjct: 224 HAANDEKRNEIMPINESNTLVALRDALKYYFQKT-KNRVTYEYIVFHNFNDSLKDAEELY 282 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 + + +P K+N+I +NP +++ + + + F++ ++ G +R RG DI AACG Sbjct: 283 RFTRHLPCKVNIIEYNPIAEADFVNTKEDKLAKFAKYLEGKGVIVNVRRSRGKDIDAACG 342 Query: 364 QLKSLSKR 371 QL ++ Sbjct: 343 QLAIKEEK 350 >gi|237755450|ref|ZP_04584074.1| radical SAM enzyme, Cfr family [Sulfurihydrogenibium yellowstonense SS-5] gi|237692382|gb|EEP61366.1| radical SAM enzyme, Cfr family [Sulfurihydrogenibium yellowstonense SS-5] Length = 354 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 138/370 (37%), Positives = 211/370 (57%), Gaps = 29/370 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L +ELE +++ G + R QI KW+Y + + M+D+S+++R+ L Sbjct: 2 KVNLKNFNLKELENFVVEKGW----QKFRAKQIAKWLYKKKASSYDEMTDLSKDIRNYLK 57 Query: 66 QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 ++ E+V + S DG+ K+L + IETV I EK+ TLCVS+QVGC Sbjct: 58 ENTEFNALELVMYQQSKIDGSIKFLWKLKD-----GNTIETVLINEKNHKTLCVSTQVGC 112 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 ++ C FC+T L+RNL EI+ Q + + LGD +ISNIV Sbjct: 113 AVGCKFCFTTKDGLIRNLETAEIVEQYINVQRFLGD-------------EEENRISNIVY 159 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE---IGVMLAI 241 MGMGEPL N++NVKKS+ I + + S R+IT+S+SG + I R+ E+ V LA+ Sbjct: 160 MGMGEPLANYENVKKSVQIFTHPDMVGLSHRKITISSSGILHQIKRMYEDKEFPEVKLAV 219 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SL+A + D R L+PI++ L+ L+D R P L RIT EYV++KG+NDS +DA Sbjct: 220 SLNASNQDQRAFLMPISQTNTLQDLMDLLRSIP-LKPGWRITLEYVLIKGVNDSEQDAKR 278 Query: 302 LIKILKGIPA--KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L+ +LK K+NLIPFNP+P E+ +++ ++ F + + + ++ IR +G DI Sbjct: 279 LVNLLKKDKHRFKVNLIPFNPYPSAEFERPEEERVLKFEKILWDNNIATFIRWSKGRDID 338 Query: 360 AACGQLKSLS 369 AACGQL+ + Sbjct: 339 AACGQLRKKA 348 >gi|86152381|ref|ZP_01070591.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni 260.94] gi|315125097|ref|YP_004067101.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85840678|gb|EAQ57930.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni 260.94] gi|315018819|gb|ADT66912.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 356 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 139/378 (36%), Positives = 204/378 (53%), Gaps = 42/378 (11%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +++ + EEL E + + R QI++WIY + +F MS + +++R L Q Sbjct: 5 VNILDFLPEELGEKIKPM--------FRVKQIYQWIYQKYANNFSDMSSLPKDLRLELAQ 56 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------------R 113 +F + V + S DG+ K+L + +E+V +P K R Sbjct: 57 NFHFSPVKCVKNEQSKDGSIKYLFEL-----IDGLRVESVLLPMKEEKIDAEGKRISHAR 111 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 T+CVSSQVGC CSFC T L RNL+A EI+ Q+L + Sbjct: 112 YTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNI------------- 158 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233 + NIV MGMGEPL N NV K++ I + + GL+ S RR T+STSG I +G+ Sbjct: 159 -PYERRINIVYMGMGEPLDNLKNVSKAVKILAQNDGLAISPRRQTISTSGLAKQIKELGQ 217 Query: 234 E-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 +GV+LAISLHAV+++LR L+PIN+ Y + ++DA R +P + +R+ FEY+++ GI Sbjct: 218 MNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGI 276 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 ND A L+K+L GI AK+NLI FNP G Y ++ + F + + G + IR Sbjct: 277 NDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSSKGVTCTIRE 336 Query: 353 PRGLDILAACGQLKSLSK 370 +GLDI AACGQLK +K Sbjct: 337 SKGLDISAACGQLKERAK 354 >gi|302522180|ref|ZP_07274522.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp. SPB78] gi|302431075|gb|EFL02891.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp. SPB78] Length = 372 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 125/369 (33%), Positives = 182/369 (49%), Gaps = 25/369 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + E +EA+ IG R Q+ + + R +D +DI R L + Sbjct: 24 RHLADLSPAERKEAVAAIG----EKPFRAKQLSQHYFARYAQDPAQWTDIPAAARGRLQE 79 Query: 67 HFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +V ISCD TRK L R + +E+V + R T+C+SSQ GC Sbjct: 80 ALLPELMSVV-RHISCDDDTTRKTLWRLFDGTL-----VESVLMRYPDRVTMCISSQAGC 133 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EI+ Q++ L D IP ++SNIV Sbjct: 134 GMNCPFCATGQAGLDRNLSTAEIVHQIVEGMRALRD---------GEIPGGPARLSNIVF 184 Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 MGMGEPL N++ V ++ +D GL S+R IT+ST G VP I R +E LA+ Sbjct: 185 MGMGEPLANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAIHRFADEGFKCRLAV 244 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++LR+ LVP+N ++ + ++DA Y S R++ EY +++ IND Sbjct: 245 SLHAPDDELRDTLVPVNTRWKVREVLDAAWEYAEKSGR-RVSIEYALIRDINDQAWRGDL 303 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++LK +NLIP NP PG ++ S +D F + I G +R RG +I A Sbjct: 304 LGRLLKNKRVHVNLIPLNPTPGSKWTASRPEDERAFVDAIAAHGVPVTVRDTRGQEIDGA 363 Query: 362 CGQLKSLSK 370 CGQL + + Sbjct: 364 CGQLAAAER 372 >gi|288573974|ref|ZP_06392331.1| radical SAM enzyme, Cfr family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569715|gb|EFC91272.1| radical SAM enzyme, Cfr family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 341 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 130/360 (36%), Positives = 187/360 (51%), Gaps = 29/360 (8%) Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69 + +E + + G P R Q+ +WIY + + D M+++S+++R L H Sbjct: 8 LEFNYDEWRNFVDEAGEPS----YRADQLCQWIYGKKVFDIHRMTNLSKDLRSKLEGHLY 63 Query: 70 IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129 + P VD + S DGT K+L RF E+E+V + + T C+S+QVGC L C Sbjct: 64 VQPPFAVDVQKSSDGTVKFLWRFLD-----GQEVESVLMDHGNHHTACLSTQVGCPLRCD 118 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 FC TG Q VRNLT EI+ L S LG I NIV MGMGE Sbjct: 119 FCATGRQGFVRNLTVGEIVGHFLAMESWLGQD-----------------IKNIVFMGMGE 161 Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248 PL N++NVKK++ I + RRIT+STSG VP I + + + V L+ SLHA ++ Sbjct: 162 PLLNWENVKKAIEILNHPKMRGMGIRRITISTSGVVPGILALADSGLDVRLSFSLHAPND 221 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 +R+ L+P+N +YPL +++A + + + RIT EYV+LK IND P A + +L Sbjct: 222 QIRSKLMPVNERYPLGQVVEALQEFQKKT-GNRITVEYVLLKRINDEPSMAYEIAALLSD 280 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 + INLIP+NP Y I F ++ G +R +G DI AACGQL+ Sbjct: 281 LDVYINLIPYNPVVER-YGRPSASRINPFMATLRELGLEVELRKEKGTDIDAACGQLRGK 339 >gi|312892339|ref|ZP_07751834.1| 23S rRNA m(2)A-2503 methyltransferase [Mucilaginibacter paludis DSM 18603] gi|311295123|gb|EFQ72297.1| 23S rRNA m(2)A-2503 methyltransferase [Mucilaginibacter paludis DSM 18603] Length = 350 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 125/367 (34%), Positives = 196/367 (53%), Gaps = 24/367 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K + + E L++ L++G R Q+++W++ + F MS++S+E+R L Sbjct: 4 NKTDIRSLSYEALQKLFLELG----EKSFRAKQVYEWLWKKSCFSFNEMSNLSKELRQKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F+I ++ + S D T K + IE V IP R T CVSSQVGC Sbjct: 60 EEQFTINNVKVNTSQFSADKTIKNSFILHDGHL-----IEGVLIPADDRMTACVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 SLTC FC TG + RNL +EI QV+L I+ + ++NIV Sbjct: 115 SLTCKFCATGYMERKRNLNPDEIYDQVVL-------------IDQQARQNYDHHLTNIVY 161 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MGMGEPL N+ NV KS+ + GL+ + +RIT+ST+G I ++G++ + LA+SL Sbjct: 162 MGMGEPLLNYANVLKSIERITAEDGLNMAAKRITVSTAGIAKMIKKLGDDQVKFNLALSL 221 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA ++ RN ++PIN + L+ L +A ++Y + +T+EY++ ND +DA+ L Sbjct: 222 HAANDAKRNEIMPINEQNSLKALAEALKYYYAKT-KNPVTYEYIVFNDFNDEIQDAVELA 280 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K IP K+N+I +NP Y +D I F++ +++ ++ +R RG DI AACG Sbjct: 281 AFCKHIPCKVNIIEYNPISFASYTNADVDKIEAFADYLRKQDINTNVRRSRGKDIDAACG 340 Query: 364 QLKSLSK 370 QL K Sbjct: 341 QLAIKEK 347 >gi|330996801|ref|ZP_08320673.1| 23S rRNA m2A2503 methyltransferase [Paraprevotella xylaniphila YIT 11841] gi|329572523|gb|EGG54174.1| 23S rRNA m2A2503 methyltransferase [Paraprevotella xylaniphila YIT 11841] Length = 348 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 129/375 (34%), Positives = 198/375 (52%), Gaps = 29/375 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K +L+GM EL+ +IG+P Q+ +W+Y + + M++IS + R LL Sbjct: 3 DKIALLGMTLSELKSVAGEIGMPS----FAARQMAEWLYGKKVASIDEMTNISAKNRCLL 58 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 N+ +++ VD + S DGT K+L R A +ETVYIP+ R TLCVSSQVGC Sbjct: 59 NERYTVGCLGPVDCQRSADGTVKYLYRTAAGGY-----VETVYIPDGDRATLCVSSQVGC 113 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG Q LTA +IL Q+ ++N+V Sbjct: 114 RMNCRFCMTGKQGFSGQLTAADILNQLYSLPERD-------------------TLTNVVF 154 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MG GEPL N DNV ++ I + G ++S +RIT+ST G + R +E LA+SLH Sbjct: 155 MGQGEPLDNLDNVLRATEILTADYGYAWSPKRITVSTVGLRKGLKRFLDESECHLAVSLH 214 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 D R L+P Y L+ ++ R Y ++ RR++FEY M +G+ND+ A L++ Sbjct: 215 NPFADQRARLMPAENSYGLQEIVALLREY-DFTHQRRLSFEYTMFEGVNDTLAHAKELLR 273 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L G+ ++NLI F+P PG + + ++ ++ F + + G S IR RG DI AACG Sbjct: 274 LLGGVECRMNLIRFHPVPGVDLKGTSEEGMLRFRDYLTGHGLFSTIRASRGQDIFAACGL 333 Query: 365 LKSLSKRIPKVPRQE 379 L + ++ ++ + E Sbjct: 334 LSTAKQQGVELKKTE 348 >gi|255007877|ref|ZP_05280003.1| hypothetical protein Bfra3_01983 [Bacteroides fragilis 3_1_12] gi|313145585|ref|ZP_07807778.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313134352|gb|EFR51712.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 344 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 132/367 (35%), Positives = 196/367 (53%), Gaps = 29/367 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K L+GM EL+ +G+P QI W+Y + + M+++S + R L Sbjct: 1 MPKYPLLGMTLTELQSVTKDLGMPA----FAAKQIASWLYDKKVTSIDEMTNLSLKHREL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L + + VD S DGT K+L R +G +E VYIP++ R TLCVSSQVG Sbjct: 57 LKGEYDLGVVAPVDAMHSIDGTVKYLYR-----VGENHFVEAVYIPDEDRATLCVSSQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG Q +LTA +IL Q+ K++N+V Sbjct: 112 CKMNCKFCMTGKQGFTASLTANQILNQIAALPERD-------------------KLTNVV 152 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N D V K+L I + S G +S +RITLS+ G + R EE LAISL Sbjct: 153 MMGMGEPLDNLDEVLKALHILTASYGYGWSPKRITLSSVGLRKGLQRFIEESECHLAISL 212 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ R+ L+P R + ++ ++D ++Y S RR++FEY++ KG+NDS A L+ Sbjct: 213 HSPFPSQRSELMPAERAFSIKEMVDLLKNY-DFSKQRRLSFEYIVFKGVNDSLIYAKELV 271 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+L+G+ ++NLI F+ PG + +D + ++ F + + G + IR RG DI AACG Sbjct: 272 KLLRGLDCRMNLIRFHAIPGVDLEGADMETMMAFRDYLTSHGLFTTIRASRGEDIFAACG 331 Query: 364 QLKSLSK 370 L + + Sbjct: 332 MLSTAKQ 338 >gi|86150562|ref|ZP_01068786.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni CF93-6] gi|86154131|ref|ZP_01072330.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni HB93-13] gi|88597741|ref|ZP_01100974.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni 84-25] gi|85839014|gb|EAQ56279.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni CF93-6] gi|85842371|gb|EAQ59587.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni HB93-13] gi|88190045|gb|EAQ94021.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni 84-25] gi|284926904|gb|ADC29256.1| putative radical SAM domain protein [Campylobacter jejuni subsp. jejuni IA3902] gi|315929674|gb|EFV08851.1| radical SAM superfamily protein [Campylobacter jejuni subsp. jejuni 305] Length = 356 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 139/378 (36%), Positives = 204/378 (53%), Gaps = 42/378 (11%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +++ + EEL E + + R QI++WIY + +F MS + +++R L Q Sbjct: 5 VNILDFLPEELGEKIKPM--------FRVKQIYQWIYQKYANNFSDMSSLPKDLRLELAQ 56 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------------R 113 +F + V + S DG+ K+L + +E+V +P K R Sbjct: 57 NFHFSPVKCVKNEQSKDGSIKYLFEL-----IDGLRVESVLLPMKEEKIDAEGKRISHAR 111 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 T+CVSSQVGC CSFC T L RNL+A EI+ Q+L + Sbjct: 112 YTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNI------------- 158 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233 + NIV MGMGEPL N NV K++ I + + GL+ S RR T+STSG I +G+ Sbjct: 159 -PYERRVNIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKELGQ 217 Query: 234 E-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 +GV+LAISLHAV+++LR L+PIN+ Y + ++DA R +P + +R+ FEY+++ GI Sbjct: 218 MNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGI 276 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 ND A L+K+L GI AK+NLI FNP G Y ++ + F + + G + IR Sbjct: 277 NDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCTIRE 336 Query: 353 PRGLDILAACGQLKSLSK 370 +GLDI AACGQLK +K Sbjct: 337 SKGLDISAACGQLKERAK 354 >gi|332880555|ref|ZP_08448229.1| 23S rRNA m2A2503 methyltransferase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681543|gb|EGJ54466.1| 23S rRNA m2A2503 methyltransferase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 344 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 129/367 (35%), Positives = 195/367 (53%), Gaps = 29/367 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K +L+GM EL+ +IG+P Q+ +W+Y + + M++IS + R LL Sbjct: 3 DKIALLGMTLAELKAVAGEIGMPS----FAARQMAEWLYGKKVASIDEMTNISAKNRRLL 58 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 N+ +++ VD + S DGT K+L R A +ETVYIP+ R TLCVSSQVGC Sbjct: 59 NERYTVGCAAPVDGQRSADGTVKYLYRTAAGGY-----VETVYIPDGDRATLCVSSQVGC 113 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG Q LTA +IL Q+ ++N+V Sbjct: 114 RMNCRFCMTGKQGFSGQLTAADILNQLYSLPERD-------------------TLTNVVF 154 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MG GEPL N DNV ++ I + G ++S +RIT+ST G + R +E LA+SLH Sbjct: 155 MGQGEPLDNLDNVLRATEILTADYGYAWSPKRITVSTVGLRKGLKRFLDESECHLAVSLH 214 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 D R +L+P Y L ++ R Y ++ RR++FEY M +G+ND+P A L++ Sbjct: 215 NPFADQRALLMPAENSYGLREIVALLREY-DFTHQRRLSFEYTMFEGVNDTPAHAKELLR 273 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L G+ ++NLI F+P PG + + ++ ++ F + + G S IR RG DI AACG Sbjct: 274 LLDGLECRMNLIRFHPVPGVDLKGTSEEGMLRFRDYLTGHGLFSTIRASRGQDIFAACGL 333 Query: 365 LKSLSKR 371 L + ++ Sbjct: 334 LSTAKQQ 340 >gi|218129787|ref|ZP_03458591.1| hypothetical protein BACEGG_01366 [Bacteroides eggerthii DSM 20697] gi|217987897|gb|EEC54222.1| hypothetical protein BACEGG_01366 [Bacteroides eggerthii DSM 20697] Length = 345 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 130/371 (35%), Positives = 194/371 (52%), Gaps = 29/371 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ L+G+ EL+ + +G+P QI W+Y + + M+++S + R LL Sbjct: 2 KQPLLGLTLTELQAVVKNLGMPG----FAAKQIASWLYGKKVASIDEMTNLSLKHRDLLK 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + VD S DGT K+L R +G +E VYIPE+ R TLCVSSQVGC Sbjct: 58 DIYEVGGEAPVDAMRSVDGTVKYLYR-----VGEGHYVEAVYIPEEDRATLCVSSQVGCK 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q NLTA +I+ Q+ K++N+VMM Sbjct: 113 MNCKFCMTGKQGFTGNLTAGQIINQI-------------------NSLPERDKLTNVVMM 153 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N D V K+L + + S G +S +R+TLS+ G + R EE LAISLH+ Sbjct: 154 GMGEPLDNLDEVLKALEVMTASYGYGWSPKRVTLSSVGLRKGLQRFVEESDCHLAISLHS 213 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 R L+P + + + +++ R+Y S RR++FEY++ KG+NDS A L+K+ Sbjct: 214 PVPQQRRELMPAEKAFSITEIVELLRNY-DFSKQRRLSFEYIVFKGVNDSLLYAKELLKL 272 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G+ +INLI F+ PG + +D + + + + G + IR RG DI AACG L Sbjct: 273 LRGLDCRINLIRFHAIPGVDLEGADMETMTALRDYLTSHGLFTTIRASRGEDIFAACGML 332 Query: 366 KSLSKRIPKVP 376 + + K Sbjct: 333 STAKQEGNKEE 343 >gi|148270145|ref|YP_001244605.1| ribosomal RNA large subunit methyltransferase N [Thermotoga petrophila RKU-1] gi|281412513|ref|YP_003346592.1| radical SAM enzyme, Cfr family [Thermotoga naphthophila RKU-10] gi|205829917|sp|A5ILF6|RLMN_THEP1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|147735689|gb|ABQ47029.1| radical SAM enzyme, Cfr family [Thermotoga petrophila RKU-1] gi|281373616|gb|ADA67178.1| radical SAM enzyme, Cfr family [Thermotoga naphthophila RKU-10] Length = 343 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 136/371 (36%), Positives = 205/371 (55%), Gaps = 32/371 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++L+ + EEL + +G+ R R QI WI+ + + +F M+++S++ R LL + Sbjct: 2 KNLLDLSYEELITEITNLGLE----RYRADQILDWIFNKKVNNFDEMTNLSKKHRALLKE 57 Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 HFSI + +++D+K+S DGT K+L IE+V + R T C+S+QVGC Sbjct: 58 HFSIPFLKLLDKKVSRIDGTTKFLWELED-----GNTIESVMLFHPDRITACISTQVGCP 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG VRNLT EI+ Q+L +KI N+V M Sbjct: 113 VKCIFCATGMSGFVRNLTTGEIVAQILSMEK-----------------EEKKKIGNVVYM 155 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 GMGEPL N++N KS+ + + RRIT+ST G I ++ EE + V LA+SLH Sbjct: 156 GMGEPLLNYENTIKSIRTLNHKKMGNIGIRRITISTVGIPDRIIQLAEEGLDVKLALSLH 215 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +N R+ LVP+N+KY +E +++A + Y + R+T EYV++KG+ND DA L + Sbjct: 216 APTNFKRDQLVPLNKKYSIEEILNAVKIYQKKT-GNRVTIEYVLIKGMNDEISDAKKLAE 274 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 ILK + +NLIP NP + ++ ++TF + SG + IR +G DI AACGQ Sbjct: 275 ILKNMKVFVNLIPVNPTVE-DLKKPSRERLLTFKRILLESGIEAEIRREKGADIEAACGQ 333 Query: 365 LKSLSKRIPKV 375 L+ KRI Sbjct: 334 LR--LKRIKST 342 >gi|34556516|ref|NP_906331.1| ribosomal RNA large subunit methyltransferase N [Wolinella succinogenes DSM 1740] gi|81833710|sp|Q7MSW1|RLMN_WOLSU RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|34482230|emb|CAE09231.1| conserved hypothetical protein [Wolinella succinogenes] Length = 359 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 140/375 (37%), Positives = 212/375 (56%), Gaps = 42/375 (11%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 ++ EEL+ L H R Q++ W+Y R +F+ M ++S+E+R L Q Sbjct: 3 NIYDYTLEELKRRL--------HPPFRAKQLYHWLYHRYEEEFEKMHNLSKEIRQKLTQD 54 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVY-------------IPEKSRG 114 +S ++V E++S DG+RK+L + + E V I E + Sbjct: 55 YSATLTKVVREEVSEDGSRKYLFQTHD-----GLTYEAVLLKMKEKKEDEEGRIVEGEKY 109 Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 T+CVSSQVGC + CSFC+T VRNL+A EI+ Q++ + L P Sbjct: 110 TICVSSQVGCKVGCSFCFTAKGGFVRNLSAGEIVYQIVALKRLNALAP------------ 157 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE- 233 K NIV MGMGEPL NF+N+ +++ I S+ GLS S +R T+STSG P I ++G Sbjct: 158 --EKRVNIVYMGMGEPLDNFENLIQAIRILSELDGLSISTKRQTISTSGIAPKIEKLGAL 215 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++GV LAISLHAV ++LR L+P+N+ Y + +I+A R +P + + +R+ FEY+++KG+N Sbjct: 216 DLGVQLAISLHAVDDELRTRLIPMNKAYNIASIIEAVRRFP-IDSRKRVMFEYLVIKGVN 274 Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353 D + A L+K+L GI +K+NLI FNP G E+ + +V F + + G IR Sbjct: 275 DDEKSAKTLLKLLNGIKSKVNLIYFNPHEGSEFERPLESKMVAFQKYLTDRGLLCTIRES 334 Query: 354 RGLDILAACGQLKSL 368 +G+DI AACGQL+ Sbjct: 335 KGIDISAACGQLREK 349 >gi|269797912|ref|YP_003311812.1| radical SAM enzyme, Cfr family [Veillonella parvula DSM 2008] gi|269094541|gb|ACZ24532.1| radical SAM enzyme, Cfr family [Veillonella parvula DSM 2008] Length = 348 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 125/368 (33%), Positives = 200/368 (54%), Gaps = 30/368 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+G EEL+ I + R Q++ +IY R I DF+ M+ +++R LN + Sbjct: 4 LLGKSLEELQSIFKTHNI----QKFRAKQLFDYIYHRYIFDFEDMTQFPKDLRQWLNDNC 59 Query: 69 SIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 I P ++ E I+ DG TRK L+ + +E V + + ++CVSSQVGC++ Sbjct: 60 VISLPTLITESIAPDGKTRKILVEMTDQS-----RVEAVLMEQHYGYSVCVSSQVGCAMG 114 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC + L R+LT EI+ QV++ +L + +I ++V+MG Sbjct: 115 CVFCASTQGGLYRDLTVAEIIGQVVIFGALTKE-----------------EIHSVVVMGA 157 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 GEPL N+DNV ++L + D M + S R++T+ST G+VPNI ++ +E + + LA+SLHA Sbjct: 158 GEPLQNYDNVLQALQLLHDPMICNISYRKMTISTCGWVPNIYKLADEALPITLALSLHAT 217 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 +N++R ++P+ +Y L ++DA ++Y + RR+TFEY+++ +N S +A L KI Sbjct: 218 NNEVRRSIMPVGARYELTEVLDAVKYYYN-TTQRRVTFEYILIDSVNASMDEAHALGKIC 276 Query: 307 KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 K P +NLIP N E ++ TF + + G S +R G I AACGQL Sbjct: 277 KDFPNCHVNLIPVNGNEHIELYKPSITNMNTFKDIVSSYGVSVTVRKEMGDAIQAACGQL 336 Query: 366 KSLSKRIP 373 K+ R Sbjct: 337 KAAHGRKK 344 >gi|288927891|ref|ZP_06421738.1| radical SAM enzyme, Cfr family [Prevotella sp. oral taxon 317 str. F0108] gi|288330725|gb|EFC69309.1| radical SAM enzyme, Cfr family [Prevotella sp. oral taxon 317 str. F0108] Length = 351 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 122/365 (33%), Positives = 192/365 (52%), Gaps = 29/365 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K L+G +EL+ + G+P Q+ W+Y + + + M++IS+ R L Sbjct: 5 KIPLLGHTLDELKAIAIDNGLPA----FAGKQMAVWLYDKHVDTIEEMTNISKSNREKLA 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 Q + I + +D + S DGT K+L + +ETVYIP++ R TLCVS QVGC Sbjct: 61 QRYEIGAAKFIDAQYSKDGTIKYLFPTESGKF-----VETVYIPDRDRATLCVSCQVGCK 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q NLTA++IL Q+ +K++NIV M Sbjct: 116 MNCLFCQTGKQGFEGNLTAKDILNQIYAL-------------------PERQKLTNIVFM 156 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 G GEP+ N DNV K I + G ++S +RIT+S+ G + R +E +AIS+H Sbjct: 157 GQGEPMDNLDNVLKVTQILTADYGYAWSPKRITVSSVGVKGKLKRFLDESDCHVAISMHT 216 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + R ++P + +E +++ + Y ++ RR++FEY+M G+ND+P A L+K+ Sbjct: 217 PIPEQRASIMPAEKGLSIEEIVELLKQY-DFTHQRRLSFEYIMFGGLNDTPLHARQLVKL 275 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 ++G+ ++NLI F+ P SD+K + TF + + G + IR RG DI AACG L Sbjct: 276 VEGLDCRVNLIRFHQIPNVNLNNSDEKRMETFRDYLTNHGVFTTIRASRGQDIFAACGLL 335 Query: 366 KSLSK 370 + K Sbjct: 336 STAKK 340 >gi|153951816|ref|YP_001398992.1| radical SAM protein [Campylobacter jejuni subsp. doylei 269.97] gi|205829694|sp|A7H662|RLMN_CAMJD RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|152939262|gb|ABS44003.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. doylei 269.97] Length = 356 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 139/378 (36%), Positives = 205/378 (54%), Gaps = 42/378 (11%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +++ + EEL E + + R QI++WIY + +F MS + +++R L Q Sbjct: 5 VNILDFLPEELGEKIKPM--------FRVKQIYQWIYQKYANNFSDMSSLPKDLRLELAQ 56 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------------R 113 +F + V + S DG+ K+L + +E+V +P K R Sbjct: 57 NFHFSPVKCVKNEQSKDGSIKYLFEL-----IDGLRVESVLLPMKEEKIDTEGKRISHAR 111 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 T+CVSSQVGC +CSFC T L RNL+A EI+ Q+L + Sbjct: 112 YTICVSSQVGCKSSCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNI------------- 158 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233 + NIV MGMGEPL N NV K++ I + + GL+ S RR T+STSG I +G+ Sbjct: 159 -PYERRVNIVYMGMGEPLDNLKNVSKAVKILAQNDGLAISPRRQTISTSGLAKQIKELGQ 217 Query: 234 E-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 +GV+LAISLHAV+++LR L+PIN+ Y + ++DA R +P + +R+ FEY+++ GI Sbjct: 218 MNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGI 276 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 ND A L+K+L GI AK+NLI FNP G Y ++ + F + + G + IR Sbjct: 277 NDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSSKGVTCTIRE 336 Query: 353 PRGLDILAACGQLKSLSK 370 +GLDI AACGQLK +K Sbjct: 337 SKGLDISAACGQLKERAK 354 >gi|167765103|ref|ZP_02437216.1| hypothetical protein BACSTE_03489 [Bacteroides stercoris ATCC 43183] gi|167696731|gb|EDS13310.1| hypothetical protein BACSTE_03489 [Bacteroides stercoris ATCC 43183] gi|290770009|gb|ADD61775.1| putative protein [uncultured organism] Length = 345 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 131/371 (35%), Positives = 193/371 (52%), Gaps = 29/371 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ L+G+ EL+ + +G+P QI W+Y + + M+++S R LL Sbjct: 2 KQPLLGLTLTELQTVVKNLGLPG----FAAKQIAAWLYDKKVASIDEMTNLSLRHRALLK 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + + VD S DGT K+L R G +E VYIP++ R TLCVSSQVGC Sbjct: 58 EIYEVGCEVPVDAMRSVDGTVKYLYR-----AGEGHYVEAVYIPDEDRATLCVSSQVGCK 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q NLTA +I+ Q+ K++N+VMM Sbjct: 113 MNCKFCMTGKQGFTANLTANQIINQI-------------------NSLPERDKLTNVVMM 153 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N D V K+L + + S G +S +RITLS+ G + R EE LA+SLH+ Sbjct: 154 GMGEPLDNLDEVLKALEVMTSSYGYGWSPKRITLSSVGLRKGLQRFIEESDCHLAVSLHS 213 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 R L+P + + + ++D R+Y S RR++FEY++ KG+NDS A L+K+ Sbjct: 214 PVPLQRRELMPAEKAFSITEIVDLLRNY-DFSKQRRLSFEYIVFKGVNDSLLYAKELLKL 272 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G+ +INLI F+ PG +D + + F + + G + IR RG DI AACG L Sbjct: 273 LRGLDCRINLIRFHAIPGVNLEGADMETMTAFRDYLTSHGLFTTIRASRGEDIFAACGML 332 Query: 366 KSLSKRIPKVP 376 + + K Sbjct: 333 STAKQEENKEE 343 >gi|313893380|ref|ZP_07826952.1| 23S rRNA m2A2503 methyltransferase [Veillonella sp. oral taxon 158 str. F0412] gi|313442021|gb|EFR60441.1| 23S rRNA m2A2503 methyltransferase [Veillonella sp. oral taxon 158 str. F0412] Length = 348 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 126/368 (34%), Positives = 199/368 (54%), Gaps = 30/368 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+G EEL+ I + R Q+ +IY R + DFQ M+ +E+R L+ + Sbjct: 4 LLGKSLEELQSIFKTHNI----QKFRAKQLIDYIYHRYVFDFQEMTQFPKELRQWLSDNC 59 Query: 69 SIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 I P ++ E IS DG TRK LL + +E V + + ++CVSSQVGC++ Sbjct: 60 VISLPTLITESISPDGKTRKILLEMTDQS-----RVEAVLMEQHYGYSVCVSSQVGCAMG 114 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC + L R+LT EI+ QV++ +L + +I ++V+MG Sbjct: 115 CVFCASTQGGLYRDLTVAEIIGQVVIFGALTKE-----------------QIHSVVVMGA 157 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 GEPL N+DNV ++L + D + + S R++T+ST G+VPNI ++ +E + + LA+SLHA Sbjct: 158 GEPLQNYDNVLQALQLLHDPVICNISYRKMTISTCGWVPNIYKLADEGLPITLALSLHAT 217 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 +N++R ++P+ +Y L ++DA ++Y + RRITFEY+++ +N S +A L +I Sbjct: 218 NNEVRRSIMPVGARYELTEVLDAVKYYYD-TTQRRITFEYILIDSVNASMEEAHALGQIC 276 Query: 307 KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 K P +NLIP N E ++ TF + + G S +R G I AACGQL Sbjct: 277 KDFPNCHVNLIPVNGNEHIELYKPSITNMNTFKDIVGSYGVSVTVRKEMGDAIQAACGQL 336 Query: 366 KSLSKRIP 373 K+ R Sbjct: 337 KAAHGRKK 344 >gi|149371549|ref|ZP_01890965.1| hypothetical protein SCB49_09100 [unidentified eubacterium SCB49] gi|149355176|gb|EDM43736.1| hypothetical protein SCB49_09100 [unidentified eubacterium SCB49] Length = 346 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 120/366 (32%), Positives = 192/366 (52%), Gaps = 24/366 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K+ + + +EEL + + +G R +Q+++W++ +G F+ M+++S E R L Sbjct: 4 EKKDIRALTKEELRDFFVALGDKA----FRGNQVYEWLWSKGAHTFEAMTNLSLETRSHL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +F I + ++ + S DGT K ++ I +E+V IP KSR T CVSSQVGC Sbjct: 60 EANFVINHIKVDSIQRSNDGTIKNAVKLHDGLI-----VESVLIPTKSRTTACVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 SL C FC T K +RNL +EI QV+ I+ +SNIV Sbjct: 115 SLDCLFCATSRLKRMRNLNPDEIYDQVVA-------------IDKESRLYHNIPLSNIVY 161 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MGMGEPL N+ NV S+ + GL S +RI +STSG I ++ ++ + LA+SL Sbjct: 162 MGMGEPLMNYKNVLASIEKITSPEGLGMSPKRIVVSTSGVPKMIKKMADDGVRFNLAVSL 221 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ + R ++P + + L+ L DA ++ +N IT+EYV+ K IND D L+ Sbjct: 222 HSAIQETREEIMPFAKSFTLDDLRDALIYWYEKTNR-AITYEYVVWKDINDKKVDIDALV 280 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 + +P K+NLI +NP ++ + + + ++++ +R RG DI AACG Sbjct: 281 RFCAHVPCKVNLIEYNPIDDGKFQQAQDAAVDAYISSLEKARVPVTVRRSRGKDIDAACG 340 Query: 364 QLKSLS 369 QL + Sbjct: 341 QLANKQ 346 >gi|328951573|ref|YP_004368908.1| Ribosomal RNA large subunit methyltransferase N [Marinithermus hydrothermalis DSM 14884] gi|328451897|gb|AEB12798.1| Ribosomal RNA large subunit methyltransferase N [Marinithermus hydrothermalis DSM 14884] Length = 353 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 134/353 (37%), Positives = 187/353 (52%), Gaps = 21/353 (5%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 +E L R QI W+Y G+R+F M+D+ + +R L + I Sbjct: 17 DERRPILEPEPEDLPGEGYRKRQIAHWLYAWGVREFDEMTDLPRALRAELAHTWRISEFS 76 Query: 75 IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134 +V S DG+ K+L + E VY+P K R T+C+SS VGC C+FC TG Sbjct: 77 LVQAFPSADGSTKYLYTLHD-----GRQTEAVYMPYKDRRTICISSMVGCPAGCTFCATG 131 Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194 + RNLTA EIL Q+L A G P R+I N+V+MGMGEPL N Sbjct: 132 QMRFGRNLTAPEILDQLLAAAYHQGISP--------------REIRNVVLMGMGEPLLNL 177 Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNI 253 NV K++ L+ S RRITLST G I R+ EE +GV LA+SLHA ++ R Sbjct: 178 TNVLKAVRRMIHKQALAMSPRRITLSTVGIPRGIYRLAEEDVGVKLALSLHAPDDETRRR 237 Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313 ++P +Y +E ++DA RHY + R+T EY +L+G+ND A L K +G+ A + Sbjct: 238 IIPTAHRYAIEEIMDAVRHYYRRTKR-RVTLEYTLLRGVNDHLWQAKMLAKHTRGLTAHV 296 Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 NLIPFNPW G + S ++ I F+ ++ +G +R RG D+ AACGQL Sbjct: 297 NLIPFNPWEGAPHEGSSREQIRRFAAVLEAAGIPVSVRWSRGRDVGAACGQLA 349 >gi|313159155|gb|EFR58530.1| 23S rRNA m2A2503 methyltransferase [Alistipes sp. HGB5] Length = 379 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 127/361 (35%), Positives = 187/361 (51%), Gaps = 29/361 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L G E+L ++G+P R Q+ +W+Y + + D MSDI+ R L + F Sbjct: 43 LYGKTPEQLAAVCAELGMP----RFAAKQLARWLYAKHVEDPMRMSDIAAAHRAKLAERF 98 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 + S DGT+K+L R IE+ YIP+ R TLCVSSQ GC + C Sbjct: 99 RPAFTPPARITESADGTKKYLYRTQ-----QGAWIESAYIPDGERATLCVSSQAGCRMGC 153 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG Q L +LT EIL Q++ ++N+V MGMG Sbjct: 154 KFCATGRQGLQHSLTTAEILNQIVSLPERD-------------------SLTNVVFMGMG 194 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN 248 EPL N DNV ++L I + G +S RITLST+G P + R + V LA+SLH + Sbjct: 195 EPLDNTDNVLRALEIMTSEWGFGWSPTRITLSTAGVAPELQRFLDATKVHLAVSLHNPFH 254 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 + R ++P+ R +P+ + R Y ++ RR++FEY+++ G+NDSPR L ++L G Sbjct: 255 EERAAIMPVERAWPIAEVAAILRRY-DFTHQRRVSFEYIVMSGLNDSPRHIRELCRLLDG 313 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 I +INLI F+ PG + D + ++ F + + G + IR RG DI AACG L + Sbjct: 314 IKCRINLIRFHKIPGSPFFSPDDEAMIRFRDTLTAKGIQTTIRASRGEDIQAACGLLSTA 373 Query: 369 S 369 + Sbjct: 374 A 374 >gi|219669867|ref|YP_002460302.1| radical SAM protein [Desulfitobacterium hafniense DCB-2] gi|259491984|sp|B8FS78|RLMN_DESHD RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|219540127|gb|ACL21866.1| radical SAM enzyme, Cfr family [Desulfitobacterium hafniense DCB-2] Length = 357 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 126/372 (33%), Positives = 199/372 (53%), Gaps = 29/372 (7%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN +K+ + + EL + ++G+P + R Q+++W+ + +++++ + +I Sbjct: 1 MNTMKRMDCRDLNQSELTQHCAELGLP----KFRGRQVFQWVQQKAVQNWEELRNIGAGD 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-----SRGT 115 R L + + V E+I+ DGTRK+L R +E V + R T Sbjct: 57 RQKLQEGLFLQPLRKVREQIAQDGTRKFLFR-----CADGETLECVLMDYDRRKNRDRHT 111 Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175 +CVS+Q+GC++ C+FC TG RNL+ EIL QVL L+ Sbjct: 112 VCVSTQIGCAVGCAFCATGLGGWRRNLSPGEILGQVLDITYLMRQ------------EDP 159 Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EE 234 +++NIV MGMGEPL N++ V K++ + +D G RR+T+STSG P I ++ + Sbjct: 160 DFQVTNIVFMGMGEPLLNYEAVLKAIELLNDPEGQGIGMRRMTISTSGVAPKIRQLAKDN 219 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 V LA+SLH+ N R+ L+P+NRKYPLE L++AC Y L+N RITFE ++ G Sbjct: 220 PQVGLAVSLHSAHNTTRDQLIPMNRKYPLEELMEACGDYTTLTNR-RITFEIALISG-QA 277 Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 + A + +LKG A +NLIP NP G K++ F++ ++ G +R + Sbjct: 278 TLEAAQAVGHLLKGQLAHVNLIPVNPVAGTGMARPTAKEVQQFAQSLESMGIPVSVREEK 337 Query: 355 GLDILAACGQLK 366 G DI AACGQL+ Sbjct: 338 GTDIDAACGQLR 349 >gi|258647948|ref|ZP_05735417.1| radical SAM enzyme, Cfr family [Prevotella tannerae ATCC 51259] gi|260851788|gb|EEX71657.1| radical SAM enzyme, Cfr family [Prevotella tannerae ATCC 51259] Length = 360 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 127/375 (33%), Positives = 198/375 (52%), Gaps = 37/375 (9%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 ++ +K++L+G+ EL++ + +P QI +W+YV +R+ M+++S R Sbjct: 3 DYQQKKNLLGLTPSELKDVARSLQLPA----FVGKQIARWLYVHHVREIDEMTNLSLAAR 58 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 LL Q + I +D + S DGT K+L R + IETV+IP+ RGTLCVSSQ Sbjct: 59 ELLKQQYVIGNSSPIDAQYSKDGTIKYLYRTLSGDY-----IETVFIPDGDRGTLCVSSQ 113 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC + C+FC TG Q V +L+A +IL Q+ +++N Sbjct: 114 VGCKMHCAFCMTGRQGYVASLSAADILNQIYSL-------------------PERERLTN 154 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 IV MG GEP N DNV ++ I + G ++S +RIT+ST G + + R +E LAI Sbjct: 155 IVFMGQGEPFDNLDNVLRATEILTSPEGYAWSPKRITVSTIGLLQGLKRFLDESKCSLAI 214 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA---------RRITFEYVMLKGI 292 SLH R ++P+ R YP++ ++ + Y RR++FEY++ G+ Sbjct: 215 SLHHAVPAEREKIMPVERAYPIKDVVRLLKQYDFCRPRTNEGVGSKQRRLSFEYIVFSGV 274 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 NDS +DA +I++LKG+ +INLI F+ P D + ++ F + + G + IR Sbjct: 275 NDSLKDAAAIIELLKGLDCRINLIRFHQIPDTPLKGVDDQKMLRFRDYLTAHGIFTTIRA 334 Query: 353 PRGLDILAACGQLKS 367 RG DI AACG L + Sbjct: 335 SRGQDIFAACGLLST 349 >gi|302345666|ref|YP_003814019.1| 23S rRNA m2A2503 methyltransferase [Prevotella melaninogenica ATCC 25845] gi|302149773|gb|ADK96035.1| 23S rRNA m2A2503 methyltransferase [Prevotella melaninogenica ATCC 25845] Length = 350 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 123/365 (33%), Positives = 190/365 (52%), Gaps = 29/365 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ L+GM EL+E +G+P QI KW+Y + ++ M++IS+ R L Sbjct: 5 KKYLLGMTLGELKEVAKSLGMPA----FTGGQIAKWLYTQHVKSIDEMTNISKANREKLA 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++I E +D + S DGT K+L +ETVYIP++ R TLCVSSQVGC Sbjct: 61 AEYAIGCKEPIDAQHSKDGTIKYLF-----PTDSGKFVETVYIPDEDRATLCVSSQVGCK 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q +L+A +IL Q+ K++NIV M Sbjct: 116 MNCLFCQTGKQGFEGSLSATDILNQIYSLPERD-------------------KLTNIVFM 156 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 G GEP+ N DNV ++ I + G +S +RIT+S+ G + R +E +AIS+H Sbjct: 157 GQGEPMDNLDNVLRTTEIMTADFGYGWSPKRITVSSVGVKGKLKRFLDESDCHVAISMHT 216 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ R+ L+P + ++ +I+ +Y S+ RR++FEY++ K NDS A ++++ Sbjct: 217 PLHEQRSELMPAEKGMSIDSIIELLSNY-DFSHQRRLSFEYIVFKDFNDSEEHAKAIVQL 275 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG+ ++NLI F+P P D + F + + G + IR RG DI AACG L Sbjct: 276 LKGLDCRMNLIRFHPIPNIPLQGVDDHRMEKFRNYLTQHGVFTTIRASRGQDIFAACGLL 335 Query: 366 KSLSK 370 + K Sbjct: 336 STAKK 340 >gi|325290448|ref|YP_004266629.1| 23S rRNA m(2)A-2503 methyltransferase [Syntrophobotulus glycolicus DSM 8271] gi|324965849|gb|ADY56628.1| 23S rRNA m(2)A-2503 methyltransferase [Syntrophobotulus glycolicus DSM 8271] Length = 351 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 140/371 (37%), Positives = 202/371 (54%), Gaps = 29/371 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K G+ E+E+ L+ GI + R Q+++W+ +G+R + M +I QE Sbjct: 1 MEKYDCRGLSEPEMEKLCLQNGI----KKFRADQVFRWVQQKGVRCWDEMKNIGQEDTDK 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE-----KSRGTLCV 118 L + F + EIV E++S DGTRK+L R P IETV + ++R T+CV Sbjct: 57 LKKVFCLQPLEIVKEQVSKDGTRKFLFRLPD-----GERIETVLMDYEKDLSRNRETVCV 111 Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 S+QVGC + C FC TG RNL+A EI QVL + I Sbjct: 112 STQVGCPVGCPFCATGVNGFHRNLSAGEITGQVLEIVRRMR------------INDPSFN 159 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GV 237 ++NIV MGMGEP N ++V K++ I + G RR+T+STSG VP I R+ EE V Sbjct: 160 VTNIVFMGMGEPFLNEESVLKAVRILNSENGQKIGMRRMTISTSGVVPGIIRLAEENKQV 219 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 LAISLH+ N LR+ILVP+NR+YPL+ L+ ACR Y + R+T E + L N + Sbjct: 220 GLAISLHSARNHLRDILVPMNRRYPLQQLMRACREYVNQTGR-RVTLE-IALTEANANKD 277 Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 +A LI++++G+P INLIP NP ++ I+ F ++ S +R +G D Sbjct: 278 EAEALIRLIQGMPVHINLIPVNPVTESSMQRPAKEKIMEFKTLLEAKNLSVTVREEKGTD 337 Query: 358 ILAACGQLKSL 368 I AACGQL+ Sbjct: 338 IDAACGQLRQR 348 >gi|325280884|ref|YP_004253426.1| Ribosomal RNA large subunit methyltransferase N [Odoribacter splanchnicus DSM 20712] gi|324312693|gb|ADY33246.1| Ribosomal RNA large subunit methyltransferase N [Odoribacter splanchnicus DSM 20712] Length = 351 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 127/370 (34%), Positives = 188/370 (50%), Gaps = 25/370 (6%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 + K+++ +L + L G R QIW+WI+ RG+ DF MS++S+ R Sbjct: 3 DTSNKKNIREESLRDLSDFLTAQG----EKAFRAKQIWQWIWQRGVTDFAEMSNLSKATR 58 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 LL++H+ + + DGT K R I +E+V IP + T+CVSSQ Sbjct: 59 ELLSRHYFFDSLFPQQVQTASDGTEKTAWRLTDGEI-----VESVLIPGNQKFTVCVSSQ 113 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC L C FC TGT RNLTA EI QV+ + G+ +SN Sbjct: 114 VGCQLGCKFCATGTLGFKRNLTAGEIFEQVVR--------------AQQAAEAQGQPLSN 159 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240 IV MGMGEPL N++ V +++ + GL+ S RIT+ST+G I ++ ++ + LA Sbjct: 160 IVFMGMGEPLLNYEQVLRAIERITAQDGLAMSPYRITVSTAGIPEKIRQLADDGVRFNLA 219 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA R L+P+N+ YPL + + +++ + R TFEY++LK INDS DA Sbjct: 220 LSLHAAKETTRTFLMPVNKAYPLSEIAGSLKYFVEKT-GTRPTFEYLLLKDINDSLEDAK 278 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L + P KIN+I +N G + S K+ F ++ +R +G DI A Sbjct: 279 ALALYCRQFPIKINIIEYNNVEGSGFHHSPDKNRDAFIRFLEGCNMVVNVRRSKGKDIDA 338 Query: 361 ACGQLKSLSK 370 ACGQL + Sbjct: 339 ACGQLAGKQE 348 >gi|78213579|ref|YP_382358.1| hypothetical protein Syncc9605_2063 [Synechococcus sp. CC9605] gi|123729671|sp|Q3AHX9|RLMN_SYNSC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|78198038|gb|ABB35803.1| conserved hypothetical protein [Synechococcus sp. CC9605] Length = 351 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 125/378 (33%), Positives = 182/378 (48%), Gaps = 38/378 (10%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++L+G EL++ + G R Q+ WIY +G R ++ + R L + Sbjct: 3 QALLGRSAAELQDWAVAQG----QKPFRGRQLHDWIYAKGARSLADITVFPKTWRAALVE 58 Query: 67 H-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + V ++ D T K LL IETV IP R T+CVSSQVGC Sbjct: 59 AGVDVGRLKEVHHSVATDATTKLLLSTED-----GETIETVGIPTDQRLTVCVSSQVGCP 113 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG L R+L EI+ QVL R + R+ S+IV M Sbjct: 114 MACRFCATGKGGLQRSLQTHEIVDQVLSVREAM-----------------DRRPSHIVFM 156 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIGVM 238 GMGEPL N V +++ +D L +RRIT+ST G + ++ E Sbjct: 157 GMGEPLLNSSAVLEAIRCLNDD--LGIGQRRITVSTVGVPKTLPQLAELAMQRLGRAQFT 214 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLHA + LR L+P YP + L++ CRHY ++ R++FEY++L G+ND P Sbjct: 215 LAVSLHAPNQRLREELIPTAHAYPYDALLEDCRHYLDVTGR-RVSFEYILLGGLNDQPEH 273 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L + G + +NLI +NP E+ + I F ++R G + +R RGLD Sbjct: 274 AAELADRVGGFQSHVNLIAYNPIEEEEFKRPTPQRIEAFRRVLERRGVAVSLRASRGLDQ 333 Query: 359 LAACGQLKSLSKRIPKVP 376 AACGQL+ + P P Sbjct: 334 NAACGQLR-RQQMAPNTP 350 >gi|153809258|ref|ZP_01961926.1| hypothetical protein BACCAC_03570 [Bacteroides caccae ATCC 43185] gi|149128028|gb|EDM19249.1| hypothetical protein BACCAC_03570 [Bacteroides caccae ATCC 43185] Length = 344 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 132/367 (35%), Positives = 198/367 (53%), Gaps = 29/367 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K L+GM EL+ ++G+P QI W+Y + + M+++S + R L Sbjct: 1 MSKYPLLGMTLVELQSLAKRLGMPG----FAAKQIASWLYDKKVASIDEMTNLSLKYREL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L Q++ + VDE S DGT K+L + +G +E+VYIP+ R TLCVSSQVG Sbjct: 57 LKQNYEVGAEAPVDEMRSVDGTVKYLYK-----VGENHFVESVYIPDDDRATLCVSSQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG Q NLTA +I+ Q+ K++N+V Sbjct: 112 CKMNCKFCMTGKQGYKANLTASQIINQI-------------------HSLPERDKLTNVV 152 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N D V ++L I + G ++S +RITLST G + R EE LAISL Sbjct: 153 MMGMGEPLDNLDEVLQALEIMTADYGYAWSPKRITLSTVGLRKGLKRFIEESDCHLAISL 212 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ R+ L+P + Y + +++ ++Y S RR++FEY++ KG+NDS A L+ Sbjct: 213 HSPLAVQRSELMPAEKGYSITEMVELLKNY-DFSKQRRLSFEYIVFKGLNDSQVYAKELL 271 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+L+G+ +INLI F+ PG + +D + F + + G + IR+ RG DI AACG Sbjct: 272 KLLRGLDCRINLIRFHAIPGVDLEGADMDTMTRFRDYLTTHGLFTTIRSSRGEDIFAACG 331 Query: 364 QLKSLSK 370 L + + Sbjct: 332 MLSTAKQ 338 >gi|121612139|ref|YP_001001357.1| radical SAM protein [Campylobacter jejuni subsp. jejuni 81-176] gi|167006246|ref|ZP_02272004.1| radical SAM enzyme, Cfr family protein [Campylobacter jejuni subsp. jejuni 81-176] gi|205829695|sp|A1W1W6|RLMN_CAMJJ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|87249061|gb|EAQ72023.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni 81-176] Length = 356 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 138/378 (36%), Positives = 203/378 (53%), Gaps = 42/378 (11%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +++ + EEL E + + R QI++WIY + +F MS + +++R L Q Sbjct: 5 VNILDFLPEELGEKIKPM--------FRVKQIYQWIYQKYANNFSDMSSLPKDLRLELAQ 56 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------------R 113 +F + V + S DG+ K+L + +E+V +P K R Sbjct: 57 NFHFSPVKCVKNEQSKDGSIKYLFEL-----IDGLRVESVLLPMKKEKINTEGKRISHAR 111 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 T+CVSSQVGC CSFC T L RNL+ EI+ Q+L + Sbjct: 112 YTICVSSQVGCKSGCSFCLTAKGGLKRNLSTGEIVGQILWIKKQNNI------------- 158 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233 + NIV MGMGEPL N NV K++ I + + GL+ S RR T+STSG I +G+ Sbjct: 159 -PYERRVNIVYMGMGEPLDNLKNVSKAVKILAQNDGLAISPRRQTISTSGLAKQIKELGQ 217 Query: 234 E-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 +GV+LAISLHAV+++LR L+PIN+ Y + ++DA R +P + +R+ FEY+++ GI Sbjct: 218 MNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGI 276 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 ND A L+K+L GI AK+NLI FNP G Y ++ + F + + G + IR Sbjct: 277 NDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCTIRE 336 Query: 353 PRGLDILAACGQLKSLSK 370 +GLDI AACGQLK +K Sbjct: 337 SKGLDISAACGQLKERAK 354 >gi|89895437|ref|YP_518924.1| hypothetical protein DSY2691 [Desulfitobacterium hafniense Y51] gi|123279892|sp|Q24U12|RLMN_DESHY RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|89334885|dbj|BAE84480.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 357 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 128/372 (34%), Positives = 199/372 (53%), Gaps = 29/372 (7%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN +K+ + + EL + ++G+P + R Q+++W+ + +++++ + +I Sbjct: 1 MNTMKRMDCRDLNQSELTQHCAELGLP----KFRGRQVFQWVQQKAVQNWEELKNIGAGD 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-----SRGT 115 R L + V E+IS DGTRK+L R +E V + R T Sbjct: 57 RQKLQDGLFLQPLRKVREQISQDGTRKFLFR-----CADGETLECVLMDYDRRKNRDRHT 111 Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175 +CVS+Q+GC++ C+FC TG RNL+ EIL QVL L+ Sbjct: 112 VCVSTQIGCAVGCAFCATGLGGWRRNLSPGEILGQVLDITYLMRQ------------EDP 159 Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EE 234 +++NIV MGMGEPL N++ V K++ + +D G RR+T+STSG P I ++ + Sbjct: 160 DFQVTNIVFMGMGEPLLNYEAVLKAIELLNDPEGQGIGMRRMTISTSGVAPKIRQLAKDN 219 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 V LA+SLH+ N R+ L+P+NRKYPLE L++ACR Y L+N RITFE ++ G Sbjct: 220 PQVGLAVSLHSAHNTTRDQLIPMNRKYPLEELMEACRDYTTLTNR-RITFEIALISG-QA 277 Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 + A + +LK A +NLIP NP G K++ F++C++ G +R + Sbjct: 278 TLEAAQAVGHLLKRQLAHVNLIPVNPVAGTGMARPTAKEVQQFAQCLESMGIPVSVREEK 337 Query: 355 GLDILAACGQLK 366 G DI AACGQL+ Sbjct: 338 GTDIDAACGQLR 349 >gi|260591531|ref|ZP_05856989.1| radical SAM enzyme, Cfr family [Prevotella veroralis F0319] gi|260536562|gb|EEX19179.1| radical SAM enzyme, Cfr family [Prevotella veroralis F0319] Length = 346 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 125/365 (34%), Positives = 193/365 (52%), Gaps = 29/365 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ L+GM EL+E +G+P Q+ KW+Y + ++ M++IS+ R L Sbjct: 5 KKYLLGMTLGELKEVAKSLGMPA----FTGGQMAKWLYSQHVKSIDEMTNISKANREKLA 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I E +D + S DGT K+L +ETVYIPE+ R TLCVSSQ+GC Sbjct: 61 AEYEIGCKEPIDAQHSKDGTIKYLF-----PTDSGKFVETVYIPEEDRATLCVSSQIGCK 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q NL+A +IL Q+ K++NIV M Sbjct: 116 MNCLFCQTGKQGFEGNLSATDILNQIYSLPERD-------------------KLTNIVFM 156 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 G GEP+ N DNV ++ + + G ++S +RIT+S+ G + R EE +AIS+H+ Sbjct: 157 GQGEPMDNLDNVLRTTEVLTADFGYAWSPKRITVSSVGIKGKLKRFLEESNCHVAISMHS 216 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ R+ L+P R +E +++ +Y S+ RR++FEY++ KG+NDS A ++K+ Sbjct: 217 PLHEQRSELMPAERGMSIESIVELLSNY-DFSHQRRLSFEYIVFKGVNDSEEHAKAIVKL 275 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 ++GI ++NLI F+P P D + F + + G + IR RG DI AACG L Sbjct: 276 VRGIECRVNLIRFHPIPNIPLHGVDDHKMEQFRNYLTQHGVFTTIRASRGQDIFAACGLL 335 Query: 366 KSLSK 370 + K Sbjct: 336 STAKK 340 >gi|188997621|ref|YP_001931872.1| radical SAM enzyme, Cfr family [Sulfurihydrogenibium sp. YO3AOP1] gi|188932688|gb|ACD67318.1| radical SAM enzyme, Cfr family [Sulfurihydrogenibium sp. YO3AOP1] Length = 354 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 137/370 (37%), Positives = 211/370 (57%), Gaps = 29/370 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L +ELE +++ G + R QI KW+Y + + + M+D+S+++R+ L Sbjct: 2 KVNLKNFNLKELENFVVEKGW----QKFRAKQIAKWLYKKKVSSYDEMTDLSKDIRNYLK 57 Query: 66 QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 ++ E+V + S DG+ K+L + IETV I EK+ TLCVS+QVGC Sbjct: 58 ENTEFNALELVMYQQSKIDGSIKFLWKLKD-----GNTIETVLINEKNHKTLCVSTQVGC 112 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 ++ C FC+T L+RNL EI+ Q + + LG +ISNIV Sbjct: 113 AVGCKFCFTTKDGLIRNLETAEIVEQYINVQRFLG-------------MEEENRISNIVY 159 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE---IGVMLAI 241 MGMGEPL N++NVKKS+ I + + S R+IT+S+SG + I R+ E+ V LA+ Sbjct: 160 MGMGEPLANYENVKKSVQIFTHPDMVGLSHRKITISSSGILHQIKRMYEDKEFPEVKLAV 219 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SL+A + D R L+PI++ L+ L+D R P L RIT EYV++KG+NDS +DA Sbjct: 220 SLNASNQDQRAFLMPISQTNTLQDLMDLLRSIP-LKPGWRITLEYVLMKGVNDSEQDAKR 278 Query: 302 LIKILKGIPA--KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L+ +LK K+NLIPFNP+P E+ +++ ++ F + + + ++ IR +G DI Sbjct: 279 LVNLLKKDKHRFKVNLIPFNPYPSAEFERPEEERVLKFEKILWDNNIATFIRWSKGRDID 338 Query: 360 AACGQLKSLS 369 AACGQL+ + Sbjct: 339 AACGQLRKKA 348 >gi|158337109|ref|YP_001518284.1| radical SAM protein [Acaryochloris marina MBIC11017] gi|205829656|sp|B0C9F4|RLMN_ACAM1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|158307350|gb|ABW28967.1| radical SAM enzyme, Cfr family [Acaryochloris marina MBIC11017] Length = 351 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 120/364 (32%), Positives = 183/364 (50%), Gaps = 31/364 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L+G + +L P R Q+ +WIY +G+ ++ + ++ R + Sbjct: 11 PPLLGASKAQLTHWAQTYQQPA----YRGQQVHQWIYQKGVHSLSDITVLPKQWRTEIAD 66 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + +I + DGT K+LL+ I IETV IP + R T+CVSSQVGC + Sbjct: 67 I-PVGRSQIHHRSAAQDGTVKYLLKLADGQI-----IETVGIPTQKRLTVCVSSQVGCPM 120 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG + RNL EI+ QVL + +++ N+V MG Sbjct: 121 GCDFCATGKGEYQRNLACHEIVDQVLTVQE-----------------DFQQRVGNVVFMG 163 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHA 245 MGEPL N + V ++ + +G +R +T+ST G I ++ ++ + LA+SLHA Sbjct: 164 MGEPLLNLEQVLAAVRSLNQDVG--IGQRSLTVSTVGIPKQILKLAQHQLQITLAVSLHA 221 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + +R LVP + YPLE L+ CR Y + R+TFEY++L G+ND AL L Sbjct: 222 SNQRIRTQLVPSAKHYPLEKLLKDCRAYVTQTGR-RVTFEYIVLSGVNDQTEHALELAHH 280 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G + +NLIP+NP +Y QK + F ++ ++ IR RGLD AACGQL Sbjct: 281 LRGFQSHVNLIPYNPISEVDYQRPTQKQLQQFLNSLQSQHITASIRRSRGLDKDAACGQL 340 Query: 366 KSLS 369 ++ Sbjct: 341 RATQ 344 >gi|149924885|ref|ZP_01913219.1| hypothetical protein PPSIR1_09370 [Plesiocystis pacifica SIR-1] gi|149814238|gb|EDM73847.1| hypothetical protein PPSIR1_09370 [Plesiocystis pacifica SIR-1] Length = 382 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 155/376 (41%), Positives = 210/376 (55%), Gaps = 19/376 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K +L GM REEL E L G R Q++ WI+ R DF M+++S+ R L Sbjct: 21 DKPNLRGMSREELGEFL---GRELSAPAYRVDQVFGWIHQRRAPDFDAMTNLSKADRAKL 77 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLCVSSQVG 123 + S+ E+ + + DGTRK LR IE+V IP RG T C+SSQVG Sbjct: 78 RERASLDTLEVDTIQRARDGTRKLRLRT-----ADGEAIESVLIPNDERGLTQCISSQVG 132 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L C FC T + RNL EI+ QV AR+LL + E +I+NIV Sbjct: 133 CALDCRFCATASLGFRRNLDTWEIVDQVARARTLLAEEAEREGARWTP------RITNIV 186 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI---GVMLA 240 MGMGEPL NF+ V++SLSI +D+ G + + RRIT+STSG VP I R E V LA Sbjct: 187 YMGMGEPLHNFNQVRRSLSILTDAGGEAIAGRRITVSTSGLVPAIERFAREGLGEEVGLA 246 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ISL+A ++ +R+ ++PINRK+ ++ L+ A R S RR+TFEYV+L G+NDS DA Sbjct: 247 ISLNATTDAVRDEVMPINRKWKIDELLAAVRR-VPTSRRRRVTFEYVLLGGVNDSDADAH 305 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 LI++++ +N+IPFNP Y Q + F ++RSG +RTPRG DI A Sbjct: 306 RLIELVREFRCHVNVIPFNPHEHAPYRRPSQSRVRAFMAILRRSGVDVWLRTPRGDDIQA 365 Query: 361 ACGQLKSLSKRIPKVP 376 ACGQL + P Sbjct: 366 ACGQLALDDPKTAAPP 381 >gi|254431713|ref|ZP_05045416.1| radical SAM enzyme, Cfr family [Cyanobium sp. PCC 7001] gi|197626166|gb|EDY38725.1| radical SAM enzyme, Cfr family [Cyanobium sp. PCC 7001] Length = 354 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 123/377 (32%), Positives = 180/377 (47%), Gaps = 42/377 (11%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + L+GM +LE G P R Q+ W+Y +G R +S + + R L Sbjct: 3 QPLLGMGLADLERWAQDQGQPA----FRGRQLHDWLYAKGARSLDAVSVLPKAWREQLLA 58 Query: 67 HFS------IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 I + ++ DGT K LL + IETV IP R T+CVSS Sbjct: 59 EPPPGATDWIGRSRELHRSVARDGTTKLLL-----ATADGLSIETVGIPAPGRLTVCVSS 113 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC + C FC TG L R+L EI+ QVL R ++G+ P S Sbjct: 114 QVGCPMACRFCATGKGGLQRSLAVHEIVDQVLSVREVMGERP-----------------S 156 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI----- 235 ++V MGMGEPL N + V ++ L ++R+IT+ST G + + E Sbjct: 157 HVVFMGMGEPLLNIEAVLAAIDCLCTD--LGMAQRQITVSTVGVPRTLPTLAERALERLG 214 Query: 236 --GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 LA+SLHA LR L+P YP+E L+D CR Y ++ R++FEY++L G+N Sbjct: 215 RAQFTLAVSLHAPDQRLREELIPTAHAYPIEALLDDCRRYVAITGR-RVSFEYILLGGLN 273 Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353 D P A L ++++G + +NLIP+NP E+ + F ++ + +R Sbjct: 274 DQPHHAEALARLIRGFQSHVNLIPYNPIEEEEFQRPSPAAVEAFRWALQERRVAVSVRAS 333 Query: 354 RGLDILAACGQLKSLSK 370 RGLD AACGQL+ + Sbjct: 334 RGLDADAACGQLRRRHQ 350 >gi|294631675|ref|ZP_06710235.1| cfr family radical SAM enzyme [Streptomyces sp. e14] gi|292835008|gb|EFF93357.1| cfr family radical SAM enzyme [Streptomyces sp. e14] Length = 368 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 124/369 (33%), Positives = 181/369 (49%), Gaps = 25/369 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + E +EA+ IG R Q+ + + R D + +DI R L + Sbjct: 20 RHLADLSPAERKEAVAAIG----EKPFRAKQLSQHYFARYAHDPEQWTDIPAGSREKLRE 75 Query: 67 HFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +V +S D TRK L R + +E+V + R T+C+SSQ GC Sbjct: 76 ALLPELMSVV-RHLSTDAGTTRKTLWRLFDGTL-----VESVLMRYPDRVTMCISSQAGC 129 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EI+ Q++ G + +P ++SNIV Sbjct: 130 GMNCPFCATGQAGLDRNLSTAEIVHQIV---------DGMRALRDGEVPGGPARLSNIVF 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 MGMGEPL N+ V ++ +D GL S+R +T+ST G VP I R +E LAI Sbjct: 181 MGMGEPLANYKRVVGAIRALTDPEPDGLGLSQRGVTVSTVGLVPAIHRFSDEGFKCRLAI 240 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++LR+ LVP+N ++ + ++DA Y S R++ EY +++ IND Sbjct: 241 SLHAPDDELRDTLVPVNTRWKVREVLDAGFEYAAKSGR-RLSIEYALIRDINDQAWRGDR 299 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++LKG P +N IP NP PG ++ S +D F E I G IR RG +I A Sbjct: 300 LGRLLKGRPVHVNCIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTIRDTRGQEIDGA 359 Query: 362 CGQLKSLSK 370 CGQL + + Sbjct: 360 CGQLAATER 368 >gi|281419754|ref|ZP_06250753.1| radical SAM enzyme, Cfr family [Prevotella copri DSM 18205] gi|281406283|gb|EFB36963.1| radical SAM enzyme, Cfr family [Prevotella copri DSM 18205] Length = 355 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 131/382 (34%), Positives = 200/382 (52%), Gaps = 31/382 (8%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN +K+ L+G+ EL++ +G+P Q+ KW+Y + ++ M++IS+ Sbjct: 1 MNN-EKKYLLGLTLAELKQVAKDLGMPA----FTGGQMAKWLYEQHVKSIDEMTNISKAN 55 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L + I D + S DGT K+L +ETVYIP+K R TLCVSS Sbjct: 56 RAKLAAEYEIGCFGYSDAQHSVDGTIKYLF-----PTRSGKFVETVYIPDKDRATLCVSS 110 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC + C FC TG Q +L A +IL QV + K++ Sbjct: 111 QVGCKMNCLFCQTGKQGFEGSLPAGDILNQVYSLPEVD-------------------KLT 151 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 NIV MG GEP+ N DNV ++ I + + G ++S +RIT+S+ G + R EE +A Sbjct: 152 NIVFMGQGEPMDNLDNVLRATEILTANYGWAWSPKRITVSSVGVKNKLKRFLEESDCHVA 211 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 IS+H R L+P R +E +++ R+Y S+ RR++FEY++ KG+NDS + A Sbjct: 212 ISMHDPIPSERAELMPAERGMGIEQVVELLRNY-DFSHQRRLSFEYIVFKGVNDSMQHAK 270 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 +IK++KG+ + NLI F+ P D + + F + + + G + IR RG DI A Sbjct: 271 AIIKLVKGLDCRFNLIRFHQIPDIPLQGVDDEKMEQFRDYLTQHGVFTTIRASRGQDIYA 330 Query: 361 ACGQLKSLSKRIPKVPRQEMQI 382 ACG L S SK+I ++ E + Sbjct: 331 ACGLL-STSKKIGEIREHEDEE 351 >gi|57236899|ref|YP_179852.1| radical SAM protein [Campylobacter jejuni RM1221] gi|81557377|sp|Q5HS83|RLMN_CAMJR RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|57165703|gb|AAW34482.1| radical SAM enzyme, Cfr family [Campylobacter jejuni RM1221] gi|315059159|gb|ADT73488.1| Ribosomal RNA large subunit methyltransferase N [Campylobacter jejuni subsp. jejuni S3] Length = 356 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 140/378 (37%), Positives = 204/378 (53%), Gaps = 42/378 (11%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +++ + EEL E + + R QI++WIY + +F MS + +++R L Q Sbjct: 5 VNILDFLPEELGEKIKPM--------FRVKQIYQWIYQKYANNFSDMSSLPKDLRLELAQ 56 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------------R 113 +F + V + S DG+ K+L + IE+V +P K R Sbjct: 57 NFHFSPVKCVKNEQSKDGSIKYLFELVD-----GLRIESVLLPMKEEKIDAEGKRISHAR 111 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 T+CVSSQVGC CSFC T L RNL+A EI+ Q+L + Sbjct: 112 YTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNI------------- 158 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233 + NIV MGMGEPL N NV K++ I + + GL+ S RR T+STSG I +G+ Sbjct: 159 -PYERRINIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKELGQ 217 Query: 234 E-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 +GV+LAISLHAV+++LR L+PIN+ Y + ++DA R +P + +R+ FEY+++ GI Sbjct: 218 MNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGI 276 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 ND A L+K+L GI AK+NLI FNP G Y ++ + F + + G + IR Sbjct: 277 NDKLEHAKELVKLLNGIKAKVNLILFNPHEGGLYKRPSLENAIKFQDLLSNKGVTCTIRE 336 Query: 353 PRGLDILAACGQLKSLSK 370 +GLDI AACGQLK +K Sbjct: 337 SKGLDISAACGQLKERAK 354 >gi|148240394|ref|YP_001225781.1| Fe-S-cluster redox protein [Synechococcus sp. WH 7803] gi|205829913|sp|A5GNG9|RLMN_SYNPW RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|147848933|emb|CAK24484.1| Predicted Fe-S-cluster redox enzyme [Synechococcus sp. WH 7803] Length = 351 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 125/379 (32%), Positives = 186/379 (49%), Gaps = 37/379 (9%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 ++ + ++L+G+ ELE + G R Q+ W+Y +G D Q ++ + + Sbjct: 2 ISTAQSKTLLGLGASELERWAVSQGQSA----FRGRQLHDWLYAKGACDLQDITVLPKAW 57 Query: 61 RHLLNQH-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119 R L I + D K++ D T K LL +ETV IP R T+CVS Sbjct: 58 RASLQDKGVIIGRLKEQDRKVAGDATTKLLL-----GTDDGETLETVGIPTDQRLTVCVS 112 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 SQVGC + C FC TG L R+L EI+ QVL R ++ R+ Sbjct: 113 SQVGCPMACRFCATGKGGLQRSLYTHEIVAQVLSVREVM-----------------ERRP 155 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE------ 233 S++V MGMGEPL N + V ++ +D L +RRIT+ST G + R+ E Sbjct: 156 SHVVFMGMGEPLLNIEAVLDAIRCLNDD--LGIGQRRITVSTVGVPRTLPRLAELAMERL 213 Query: 234 -EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 LA+SLHA + LR L+P YP + L+D CRHY ++ R++FEY++L G+ Sbjct: 214 GRAQFTLAVSLHAPNQSLREELIPTAHAYPYDALLDDCRHYLAITGR-RVSFEYILLGGL 272 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 ND P A L + G + +NLI +NP E+ + I F ++ G + +R Sbjct: 273 NDHPAHAEELADRVGGFQSHVNLIAYNPIEEEEFQRPTRDRIEGFRRVLESRGVAVSLRA 332 Query: 353 PRGLDILAACGQLKSLSKR 371 RGLD AACGQL+ ++ Sbjct: 333 SRGLDQDAACGQLRRSRQK 351 >gi|329956949|ref|ZP_08297517.1| 23S rRNA m2A2503 methyltransferase [Bacteroides clarus YIT 12056] gi|328523706|gb|EGF50798.1| 23S rRNA m2A2503 methyltransferase [Bacteroides clarus YIT 12056] Length = 345 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 130/371 (35%), Positives = 194/371 (52%), Gaps = 29/371 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ L+G+ EL+ + +G+P QI W+Y + M+++S + R LL Sbjct: 2 KQPLLGLTLTELQAVVKNLGMPG----FAAKQIASWLYDKKAASIDEMTNLSLKHRELLK 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + + VD S DGT K+L R G +E VYIP++ R TLCVSSQVGC Sbjct: 58 EIYEVGGEAPVDAMRSADGTVKYLYR-----AGEGHYVEAVYIPDEDRATLCVSSQVGCK 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q NLTA +I+ Q+ K++N+VMM Sbjct: 113 MNCKFCMTGKQGFTANLTANQIINQI-------------------NSLPERDKLTNVVMM 153 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N D V K+L + + S G +S +RITLS+ G + R EE LAISLH+ Sbjct: 154 GMGEPLDNLDEVLKALEVMTSSYGYGWSPKRITLSSVGLRKGLQRFIEESDCHLAISLHS 213 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 R L+P + + + +++ R+Y S RR++FEY++ KG+NDS A L+K+ Sbjct: 214 PVPLQRRELMPAEKAFSIAEIVELLRNY-DFSKQRRLSFEYIVFKGVNDSLLYAKELLKL 272 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G+ ++NLI F+ PG + +D + + T + + G + IR RG DI AACG L Sbjct: 273 LRGLDCRVNLIRFHAIPGVDLEGADMETMTTLRDYLTSHGLFTTIRASRGEDIFAACGML 332 Query: 366 KSLSKRIPKVP 376 + + K Sbjct: 333 STAKQEENKEE 343 >gi|238019374|ref|ZP_04599800.1| hypothetical protein VEIDISOL_01238 [Veillonella dispar ATCC 17748] gi|237864073|gb|EEP65363.1| hypothetical protein VEIDISOL_01238 [Veillonella dispar ATCC 17748] Length = 348 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 126/368 (34%), Positives = 200/368 (54%), Gaps = 30/368 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+G EEL+ I + R Q+ +IY R + DFQ M+ +E+R L+ + Sbjct: 4 LLGKSLEELQSIFKTHNI----QKFRAKQLIDYIYHRYVFDFQDMTQFPKELRQWLSDNC 59 Query: 69 SIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 I P ++ E +S DG TRK L+ + +E V + + ++CVSSQVGC++ Sbjct: 60 IISLPTLITESVSPDGKTRKILVEMIDQS-----RVEAVLMEQHYGYSVCVSSQVGCAMG 114 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC + L R+LTA EI+ QV++ +L + +I ++V+MG Sbjct: 115 CVFCASTQGGLYRDLTAAEIIGQVVIFGALTKE-----------------QIHSVVVMGA 157 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 GEPL N+DNV ++L + D + + S R++T+ST G+VPNI ++ +E + + LA+SLHA Sbjct: 158 GEPLQNYDNVLQALQLLHDPVICNISYRKMTISTCGWVPNIYKLADEGLPITLALSLHAT 217 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 +N++R ++P+ +Y L ++DA ++Y + RRITFEY+++ IN S +A L +I Sbjct: 218 NNEVRRSIMPVGARYELTEVLDAVKYYYD-TTQRRITFEYILIDSINASMEEAHALGEIC 276 Query: 307 KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 K P +NLIP N E ++ TF + + G S +R G I AACGQL Sbjct: 277 KDFPNCHVNLIPVNGNEHIELYKPSITNMNTFKDIVASYGVSVTVRKEMGDAIQAACGQL 336 Query: 366 KSLSKRIP 373 K+ R Sbjct: 337 KAAHGRKK 344 >gi|268316491|ref|YP_003290210.1| radical SAM enzyme, Cfr family [Rhodothermus marinus DSM 4252] gi|262334025|gb|ACY47822.1| radical SAM enzyme, Cfr family [Rhodothermus marinus DSM 4252] Length = 364 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 135/380 (35%), Positives = 197/380 (51%), Gaps = 33/380 (8%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M L + REELE ++G P R R Q++KWIY +G + M+D+ + Sbjct: 1 MTVRTPIDLQTLNREELERLAEEMGEP----RYRGRQLFKWIYGKGATSVEQMTDLPRAF 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------R 113 R L + I E V + + D T K L R P+ +E+V IP+ R Sbjct: 57 RAELARRARITRLEPVRQLTAGDQTVKVLFRLPS-----GRHVESVLIPDFDEETGRVRR 111 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 T+CVSSQVGC++ C+FC TG +NLTA EI QV L + Sbjct: 112 LTVCVSSQVGCAMGCAFCATGLMGFQQNLTAGEIYDQVWQLNRLAEE------------- 158 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233 GR+I+N+V MGMGEPL N+D V +S+++ +D GL S RRIT+ST G I ++ + Sbjct: 159 RFGRRITNVVYMGMGEPLLNYDAVLRSVALLTDRDGLGLSPRRITVSTVGLARRIRQLAD 218 Query: 234 E-IGVMLAISLHAVSNDLRNILVPINRKY--PLEMLIDACRHYPGLSNARRITFEYVMLK 290 + + LA+SLHA +N R+ ++P+NR L+ LI+A R Y + IT+EY + + Sbjct: 219 DGVRFRLAVSLHAPTNAQRSAIMPVNRNEQTDLDDLIEAIR-YFEARTGQTITYEYCLFE 277 Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI 350 G ND P DA L + + P K+NLI +NP G + ++ + F + G + + Sbjct: 278 GFNDRPEDAHRLADLTEQAPGKVNLILYNPVEGLPFRRPSEERLQAFIRVLVDRGVTVTV 337 Query: 351 RTPRGLDILAACGQLKSLSK 370 R RG DI AACGQL + Sbjct: 338 RRSRGQDINAACGQLAVREQ 357 >gi|218563299|ref|YP_002345079.1| ribosomal RNA large subunit methyltransferase N [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|123042659|sp|Q0P7R8|RLMN_CAMJE RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|112361006|emb|CAL35807.1| putative radical SAM domain protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315926640|gb|EFV06020.1| radical SAM superfamily protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 356 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 138/378 (36%), Positives = 204/378 (53%), Gaps = 42/378 (11%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +++ + EEL E + + R QI++WIY + +F MS + +++R L + Sbjct: 5 VNILDFLPEELGEKIKPM--------FRVKQIYQWIYQKYANNFSDMSSLPKDLRLELAR 56 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------------R 113 +F + V + S DG+ K+L + +E+V +P K R Sbjct: 57 NFHFSPVKCVKNEQSKDGSIKYLFEL-----IDGLRVESVLLPMKEEKIDAEGKRISHAR 111 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 T+CVSSQVGC CSFC T L RNL+A EI+ Q+L + Sbjct: 112 YTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNI------------- 158 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233 + NIV MGMGEPL N NV K++ I + + GL+ S RR T+STSG I +G+ Sbjct: 159 -PYERRVNIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKELGQ 217 Query: 234 E-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 +GV+LAISLHAV+++LR L+PIN+ Y + ++DA R +P + +R+ FEY+++ GI Sbjct: 218 MNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGI 276 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 ND A L+K+L GI AK+NLI FNP G Y ++ + F + + G + IR Sbjct: 277 NDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCTIRE 336 Query: 353 PRGLDILAACGQLKSLSK 370 +GLDI AACGQLK +K Sbjct: 337 SKGLDISAACGQLKERAK 354 >gi|288803681|ref|ZP_06409111.1| radical SAM enzyme, Cfr family [Prevotella melaninogenica D18] gi|288333921|gb|EFC72366.1| radical SAM enzyme, Cfr family [Prevotella melaninogenica D18] Length = 350 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 122/365 (33%), Positives = 189/365 (51%), Gaps = 29/365 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ L+GM EL+E +G+P QI KW+Y + ++ M++IS+ R L Sbjct: 5 KKYLLGMTLGELKEVAKSLGMPA----FTGGQIAKWLYTQHVKSIDEMTNISKANREKLA 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++I E +D + S DGT K+L +ETVYIP++ TLCVSSQVGC Sbjct: 61 AEYAIGCKEPIDAQHSKDGTIKYLF-----PTDSGKFVETVYIPDEDHATLCVSSQVGCK 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q +L+A +IL Q+ K++NIV M Sbjct: 116 MNCLFCQTGKQGFEGSLSATDILNQIYSLPERD-------------------KLTNIVFM 156 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 G GEP+ N DNV ++ I + G +S +RIT+S+ G + R +E +AIS+H Sbjct: 157 GQGEPMDNLDNVLRTTEIMTADFGYGWSPKRITVSSVGVKGKLKRFLDESDCHVAISMHT 216 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ R+ L+P + ++ +I+ +Y S+ RR++FEY++ K NDS A ++++ Sbjct: 217 PLHEQRSELMPAEKGMSIDSIIELLSNY-DFSHQRRLSFEYIVFKDFNDSEEHAKAIVQL 275 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG+ ++NLI F+P P D + F + + G + IR RG DI AACG L Sbjct: 276 LKGLDCRMNLIRFHPIPNIPLQGVDDHRMEKFRNYLTQHGVFTTIRASRGQDIFAACGLL 335 Query: 366 KSLSK 370 + K Sbjct: 336 STAKK 340 >gi|306822705|ref|ZP_07456083.1| cfr family radical SAM enzyme [Bifidobacterium dentium ATCC 27679] gi|304554250|gb|EFM42159.1| cfr family radical SAM enzyme [Bifidobacterium dentium ATCC 27679] Length = 393 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 126/375 (33%), Positives = 191/375 (50%), Gaps = 28/375 (7%) Query: 6 KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 K L M +E ++G+P R R Q+ Y D + SD R Sbjct: 38 KPPLHFADMSEDERIAKAKELGLP----RFRVKQLANHYYGHFDVDAEEFSDFPANKRAE 93 Query: 64 LNQHFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + F V +++ +GT K L R + IE+V + +R TLC+SSQV Sbjct: 94 AAEAFFPTLITEVTRQVADEGTTIKTLWRLFDGSL-----IESVLMRYPTRTTLCISSQV 148 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RN++A EI+ QV +A + D + ++SNI Sbjct: 149 GCGMGCPFCATGKLGLTRNMSAGEIVEQVRVAAKAMRD---------GEVAGGPGRLSNI 199 Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239 V MGMGEP+ N+ +V ++ S G S R IT+ST G VP I ++ E I V L Sbjct: 200 VFMGMGEPMGNYRSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRL 259 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA S++LR+ LVP+N+++ + ++DA Y L++ RR++ EY +++GIND A Sbjct: 260 AVSLHAPSDELRDELVPMNKRFDITQVLDAAHDYY-LASKRRVSIEYALMRGINDQAEHA 318 Query: 300 LNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L K L A +N IP NP G ++ S +D F + + ++G ++ +R RG Sbjct: 319 RLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDERRFLDILHQAGVTATLRDTRGQ 378 Query: 357 DILAACGQLKSLSKR 371 DI ACGQL + ++ Sbjct: 379 DIDGACGQLAAKERQ 393 >gi|78184186|ref|YP_376621.1| ribosomal RNA large subunit methyltransferase N [Synechococcus sp. CC9902] gi|123743556|sp|Q3AZA0|RLMN_SYNS9 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|78168480|gb|ABB25577.1| conserved hypothetical protein [Synechococcus sp. CC9902] Length = 351 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 126/369 (34%), Positives = 184/369 (49%), Gaps = 37/369 (10%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL- 64 K L+G ELE+ + G H R QI W+Y +G++ +S + ++ R L Sbjct: 2 KNVLLGRSAAELEDWAVAQG----HKSFRGRQIHDWLYNKGVKSLSEISALPKQWRTELE 57 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q F + ++V + ++ D T K LL IETV IP R T+C+SSQVGC Sbjct: 58 AQTFRVGRLKLVHQSVAADATTKLLL-----ATDDGETIETVGIPTDQRLTVCISSQVGC 112 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L R+L EI+ QVL R + R+ S++V Sbjct: 113 PMACRFCATGKSGLQRSLATHEIVDQVLSVREAM-----------------DRRPSHVVF 155 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIGV 237 MGMGEPL N + V +++ + L +RRIT+ST G + ++ E Sbjct: 156 MGMGEPLLNSEAVLETIRCLNTD--LGIGQRRITVSTVGVPKTLPQLAELAMEKLGRAQF 213 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 LA+SLHA + LR L+P YP + L+D CRHY L+ R++FEY++L +ND P Sbjct: 214 TLAVSLHAPNQQLREELIPTAHAYPYDDLLDDCRHYLDLTGR-RVSFEYILLGELNDHPE 272 Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 A L + G + +NLI +NP E+ + I F ++R G + +R RGLD Sbjct: 273 HAAELADRVGGFQSHVNLIAYNPIEEEEFKRPTSQRIEAFRRVLERRGVAVSLRASRGLD 332 Query: 358 ILAACGQLK 366 AACGQL+ Sbjct: 333 QNAACGQLR 341 >gi|297202671|ref|ZP_06920068.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sviceus ATCC 29083] gi|197713246|gb|EDY57280.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sviceus ATCC 29083] Length = 368 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 126/369 (34%), Positives = 183/369 (49%), Gaps = 25/369 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + E +E + +IG R Q+ + + R D +DI R L + Sbjct: 20 RHLADLTPAERKEVVAEIG----EKPFRAKQLSQHYFARYAHDPAEWTDIPAGARGKLQE 75 Query: 67 HFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +V +S D TRK L R + +E+V + R T+C+SSQ GC Sbjct: 76 ALLPELMTVV-RHLSTDQGTTRKTLWRLFDGTL-----VESVLMRYPDRVTMCISSQAGC 129 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EI+ Q++ G + +P ++SNIV Sbjct: 130 GMNCPFCATGQAGLDRNLSTAEIVHQIV---------DGMRALRDGEVPGGPARLSNIVF 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 MGMGEPL N+ V +S+ +D GL S+R IT+ST G VP I R +E LAI Sbjct: 181 MGMGEPLANYKRVTQSIRALTDPAPDGLGLSQRGITVSTVGLVPAIHRFSDEGFKCRLAI 240 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++LR+ LVP+N ++ + ++DA Y S R++ EY +++ IND Sbjct: 241 SLHAPDDELRDTLVPVNTRWKVREVLDAGFEYVEKSGR-RLSIEYALIRDINDQAWRGDR 299 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++LKG P +NLIP NP PG ++ S +D F E I G + IR RG +I A Sbjct: 300 LGRLLKGKPVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVAVTIRDTRGQEIDGA 359 Query: 362 CGQLKSLSK 370 CGQL + + Sbjct: 360 CGQLAATER 368 >gi|327313758|ref|YP_004329195.1| 23S rRNA m2A2503 methyltransferase [Prevotella denticola F0289] gi|326945675|gb|AEA21560.1| 23S rRNA m2A2503 methyltransferase [Prevotella denticola F0289] Length = 357 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 127/378 (33%), Positives = 195/378 (51%), Gaps = 31/378 (8%) Query: 2 NFLK--KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59 ++ K+ L+GM EL+E +G+P Q+ KW+Y + ++ M++IS+ Sbjct: 3 TSMETAKKYLLGMTLGELKEVAKSLGMPA----FTGGQMAKWLYTQQVKSIDEMTNISKA 58 Query: 60 VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119 R L ++I E D + S DGT K+L +ETVYIPE R TLCVS Sbjct: 59 NREKLAAAYAIGCKEPTDVQYSKDGTVKYLF-----PTDSGKFVETVYIPEDGRATLCVS 113 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 SQVGC + C FC TG Q +L+A +IL QV K+ Sbjct: 114 SQVGCKMNCLFCQTGKQGFEGSLSATDILNQVYSLPERD-------------------KL 154 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 +NIV MG GEP+ N DNV + I + G +S +RIT+S+ G + R EE + Sbjct: 155 TNIVFMGQGEPMDNLDNVLRVTEILTAGFGYGWSPKRITVSSVGIKGKLKRFLEESDCHV 214 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 AIS+H+ ++ R+ L+P R +E ++D +Y S+ RR++FEY++ K +NDS A Sbjct: 215 AISMHSPLHEQRSELMPAERGMSIESIVDLLGNY-DFSHQRRLSFEYIVFKDVNDSEAHA 273 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++++LKG+ +INLI F+P P D + + F + + G + IR RG DI Sbjct: 274 KAIVRLLKGLDCRINLIRFHPIPNTPLQGVDDRKMEEFRNYLTQHGVFTTIRASRGQDIF 333 Query: 360 AACGQLKSLSKRIPKVPR 377 AACG L + ++ + + Sbjct: 334 AACGLLSTAKEKDGRKGK 351 >gi|297182513|gb|ADI18675.1| predicted Fe-S cluster redox enzyme [uncultured Acidobacteria bacterium HF4000_26D02] Length = 384 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 143/378 (37%), Positives = 202/378 (53%), Gaps = 28/378 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K + + ELE + +G+ R QI++WIY RG+ F M+D+S VR L Sbjct: 30 KTDIAELEPAELEAVVSTLGVE----RFHARQIYRWIYRRGLERFDRMTDLSLPVREQLE 85 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +I P + + S DGT+K+L+ IE+V+IP+ T CVS+QVGC+ Sbjct: 86 AALTITTPAVRTREQSSDGTQKFLVTL-----ADGRTIESVFIPDTPAMTFCVSTQVGCA 140 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG LVRNL+A EI QV + L + + NIV+M Sbjct: 141 MRCGFCLTGQMGLVRNLSAGEIAGQVRVLAREL---------------ELQDRRFNIVLM 185 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLH 244 GMGEPL N+D K+L I + GL+ + RR+TLST G +P + R+ E LAISLH Sbjct: 186 GMGEPLHNYDATMKALRILAAPAGLALTPRRVTLSTIGILPALERLAHEPWLPNLAISLH 245 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++ LR+ L+P +R L L CR +P + + RITFEYV+L G+ND+ DA L K Sbjct: 246 ATTDRLRHELIPTSRTQRLGDLAAVCRRFP-VKHRDRITFEYVLLAGVNDTEADATRLPK 304 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L+G+ AK+NLIP N PG + + + F+ + +G +R RG DI AACGQ Sbjct: 305 LLRGLRAKVNLIPLNEAPGIPFSRPSDRRVDWFARSLASAGLRVSVRKSRGRDIRAACGQ 364 Query: 365 LKSLSKRIPKVPRQEMQI 382 L R + P Q Sbjct: 365 LIVEGPR--RSPGQRAAE 380 >gi|330790726|ref|XP_003283447.1| hypothetical protein DICPUDRAFT_25816 [Dictyostelium purpureum] gi|325086712|gb|EGC40098.1| hypothetical protein DICPUDRAFT_25816 [Dictyostelium purpureum] Length = 390 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 154/358 (43%), Positives = 227/358 (63%), Gaps = 22/358 (6%) Query: 11 GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70 G+ + +L E K+ P + Q+WK +Y +GI + + IS+E + ++ ++F + Sbjct: 54 GLPKLDLIEKFEKLNFP----KYSVDQVWKLMYNKGIDQIKDFNLISKERKSIMEENFKL 109 Query: 71 IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130 I ++S DGTRK+L+ F E+E+V+IPE SRGTLCVSSQVGC+ C+F Sbjct: 110 DTGTITKHQLSVDGTRKFLISF------DGDEVESVFIPESSRGTLCVSSQVGCTFACTF 163 Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 C+TGTQK RNLTA EI+ QV+ AR LL DF E+ R ++NIV MG GEP Sbjct: 164 CFTGTQKFKRNLTANEIVAQVVAARKLLNDFNASEE----------RLLTNIVFMGQGEP 213 Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVSND 249 N+ NVKK++SI +DS GL+ K +IT+STSG VP I R+G + + LAISLH+ +++ Sbjct: 214 FYNYRNVKKAISIITDSNGLAIGKSKITVSTSGVVPIIERLGTDFPGIGLAISLHSPNDE 273 Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309 +R+ +V NR++P+E L+ +C + + RIT EYV L+ ++D+ +DAL+LI + K Sbjct: 274 VRSKIVTANRQWPIEELVQSCIKF-SKTTKSRITLEYVPLQDVHDTEQDALDLIPLCKRF 332 Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 P+ +N+IPFNPWPG + S I F+ ++ + + IR RG DI+AACGQLKS Sbjct: 333 PSLVNIIPFNPWPGSPHESSTNNQIQIFANILESNNVKTTIRQSRGRDIMAACGQLKS 390 >gi|282850141|ref|ZP_06259520.1| 23S rRNA m2A2503 methyltransferase [Veillonella parvula ATCC 17745] gi|294791793|ref|ZP_06756941.1| radical SAM enzyme, Cfr family [Veillonella sp. 6_1_27] gi|294793654|ref|ZP_06758791.1| radical SAM enzyme, Cfr family [Veillonella sp. 3_1_44] gi|282579634|gb|EFB85038.1| 23S rRNA m2A2503 methyltransferase [Veillonella parvula ATCC 17745] gi|294455224|gb|EFG23596.1| radical SAM enzyme, Cfr family [Veillonella sp. 3_1_44] gi|294457023|gb|EFG25385.1| radical SAM enzyme, Cfr family [Veillonella sp. 6_1_27] Length = 348 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 125/368 (33%), Positives = 198/368 (53%), Gaps = 30/368 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+G EEL+ I + R Q+ +IY R I DF+ M+ +++R L + Sbjct: 4 LLGKSLEELQSIFKTHNI----QKFRAKQLIDYIYHRYIFDFEDMTQFPKDLRQWLGDNC 59 Query: 69 SIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 I P ++ E I+ DG TRK L+ + +E V + + ++CVSSQVGC++ Sbjct: 60 VISLPTLITESIAPDGKTRKILVEMSDQS-----RVEAVLMEQHYGYSVCVSSQVGCAMG 114 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC + L R+LT EI+ QV++ +L + +I ++V+MG Sbjct: 115 CVFCASTQGGLYRDLTVAEIIGQVVIFGALTKE-----------------EIHSVVVMGA 157 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 GEPL N+DNV ++L + D M + S R++T+ST G+VPNI ++ +E + + LA+SLHA Sbjct: 158 GEPLQNYDNVLQALQLLHDPMICNISYRKMTISTCGWVPNIYKLADEGLPITLALSLHAT 217 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 +N++R ++P+ +Y L ++DA ++Y + RR+TFEY+++ +N S DA L KI Sbjct: 218 NNEVRRSIMPVGARYELTEVLDAVKYYYN-TTQRRVTFEYILIDSVNASIDDAHALGKIC 276 Query: 307 KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 K P +NLIP N E ++ TF + + G S +R G I AACGQL Sbjct: 277 KDFPNCHVNLIPVNGNEHIELYKPSITNMNTFKDIVSSYGVSVTVRKEMGDAIQAACGQL 336 Query: 366 KSLSKRIP 373 K+ R Sbjct: 337 KAAHGRKK 344 >gi|323141165|ref|ZP_08076066.1| 23S rRNA m2A2503 methyltransferase [Phascolarctobacterium sp. YIT 12067] gi|322414308|gb|EFY05126.1| 23S rRNA m2A2503 methyltransferase [Phascolarctobacterium sp. YIT 12067] Length = 351 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 128/369 (34%), Positives = 202/369 (54%), Gaps = 28/369 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + + + EEL++ + G+ + R Q+++W+Y + + DF M ++S+ +L + Sbjct: 2 QDIFALPIEELQDLFVAAGL----KKFRAKQVFQWLYQKSVFDFTAMHNLSKADIAVLQE 57 Query: 67 HFSIIY--PEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F+++ EI+ E+ S DG T K LL P +ETV + ++CVSSQVG Sbjct: 58 KFTVLPHSLEILREQNSSDGMTSKLLLGLPD-----GNSVETVLMHHDYGYSVCVSSQVG 112 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C+FC +G + VRNLTA EI+ QV L L + G +S +V Sbjct: 113 CDMHCAFCASGLKGAVRNLTAAEIVAQVYLFNERLRE--------------QGAMVSRVV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG GEP+ NFD+V ++L + S R +T+ST G +P I R+ E+ + LAIS Sbjct: 159 VMGSGEPMLNFDSVLQALDFLHREDTCNMSYRNMTISTCGIIPGIKRLEEQGNPINLAIS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHAV N+LR L+P+N+ YP ++ A Y S + IT+EY++LKG NDSP+DA L Sbjct: 219 LHAVKNELRTALMPVNKGYPFVDVLTAAESYSKASGRQ-ITYEYILLKGKNDSPQDAELL 277 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 L+ A +NLIP NP P + + + F ++++ ++ +R G DI AAC Sbjct: 278 SNYLRYKQASVNLIPANPVPEQGFERPSKAAVERFLRILQKNRINATVRKEMGKDIDAAC 337 Query: 363 GQLKSLSKR 371 GQL++ + Sbjct: 338 GQLRAKFAK 346 >gi|172040504|ref|YP_001800218.1| hypothetical protein cur_0824 [Corynebacterium urealyticum DSM 7109] gi|171851808|emb|CAQ04784.1| conserved hypothetical protein [Corynebacterium urealyticum DSM 7109] Length = 370 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 120/373 (32%), Positives = 193/373 (51%), Gaps = 26/373 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 L + + E++EEA++++G+P + R Q++ Y R D M+D+ + R Sbjct: 16 LPPKHFADLTAEQVEEAVVELGLP----KFRAKQLYNQYYGRLEGDPLEMTDLPEASRQA 71 Query: 64 LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + + + + + DG TRK L R + +E+V + R TLC+SSQ Sbjct: 72 VKEKLFPALMTPLRKLDADDGETRKTLWRLHDGTL-----LESVLMRYPGRATLCISSQA 126 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RNL+ EI+ QV A + D + + ++SNI Sbjct: 127 GCGMACPFCATGQGGLDRNLSVGEIVEQVRNAARAMRD---------GEVAGIEGRLSNI 177 Query: 183 VMMGMGEPLCNFDNVKKSLSIAS--DSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239 V MGMGEPL N+ V +++ + + G S+R +T+ST G P I ++ +E + V L Sbjct: 178 VFMGMGEPLANYKRVVEAVRQITQPEPHGFGISQRNVTVSTVGLAPAIRKLADEDMSVRL 237 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH ++LR+ LVP+N ++ +E ++DA +Y S R++ EY +++ IND P A Sbjct: 238 AVSLHTPDDELRDTLVPVNNRWSVEEVLDAAAYYAEKSGR-RVSIEYALIRDINDQPWRA 296 Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L K L G +NLIP NP PG ++ S ++ F + + G +R +G Sbjct: 297 DMLGKKLHKALGSKVHVNLIPLNPTPGSKWDASPKERQDEFVQRVIAQGVPCTVRDTKGQ 356 Query: 357 DILAACGQLKSLS 369 +I AACGQL + Sbjct: 357 EIAAACGQLAAEE 369 >gi|269123374|ref|YP_003305951.1| radical SAM enzyme, Cfr family [Streptobacillus moniliformis DSM 12112] gi|268314700|gb|ACZ01074.1| radical SAM enzyme, Cfr family [Streptobacillus moniliformis DSM 12112] Length = 353 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 130/371 (35%), Positives = 201/371 (54%), Gaps = 26/371 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K ++ + +ELE+ L++G+ + Q+++W++ + + +F S+IS+E R L Sbjct: 1 MVKIDILDLSLDELEKMFLELGL----KKFNALQVYQWLHKKLVFNFDEFSNISKETREL 56 Query: 64 LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L + F I + V + S D T K+L P + + IE+V + K+R ++CVSSQV Sbjct: 57 LKEKFEIGTLKYVTHQTSKDKETVKFLFSLPGKKL-----IESVLLKYKNRYSICVSSQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C FC TG K +NL A EIL+Q ++ L + KISN+ Sbjct: 112 GCPLKCDFCATGMMKFEKNLKASEILMQFYYLQNYLKE--------------KNDKISNV 157 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 V MGMGEP N+D V KS++I + G +FSKR T+STSG + I + E+ V LAI Sbjct: 158 VYMGMGEPFLNYDAVNKSINILNSKEGQAFSKRNFTISTSGLINEIDKFVEDQKQVGLAI 217 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH+V+ R+ L+PIN+ PL+ L ++ +Y + RITFEY+++ N DA+ Sbjct: 218 SLHSVNEKRRSELMPINKINPLDKLRESLLNYQNKT-KNRITFEYILIDDFNCEKEDAVA 276 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L+K ++ +NLIP+N G Y + F + + +R +G DI AA Sbjct: 277 LVKFMRSFNHLVNLIPYNKVAGKPYKTPSLQKQKEFYNHLLSHKINVTLRETKGEDIQAA 336 Query: 362 CGQLKSLSKRI 372 CGQLK + I Sbjct: 337 CGQLKVKKEEI 347 >gi|313203119|ref|YP_004041776.1| 23S rRNA m(2)a-2503 methyltransferase [Paludibacter propionicigenes WB4] gi|312442435|gb|ADQ78791.1| 23S rRNA m(2)A-2503 methyltransferase [Paludibacter propionicigenes WB4] Length = 350 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 132/369 (35%), Positives = 194/369 (52%), Gaps = 29/369 (7%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M ++L G+ +L+ +L +G+P SQ+ W+Y + + D M+++S++ Sbjct: 1 METHLPKNLFGLTLPQLKAEVLALGLPA----FTASQLADWMYKKRVTDIGSMTNLSKQA 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L Q +S+ V + S DGT+K+L + IE YIP+K R TLCVS+ Sbjct: 57 REKLQQAYSLHLVPSVSVQTSTDGTKKYLYPTRPQKF-----IEAAYIPDKDRATLCVST 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q+GC + C FC TG Q NLT EIL Q M K++ Sbjct: 112 QIGCKMGCLFCMTGKQGFQGNLTTGEILNQ-------------------MQSLPEFDKLT 152 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 NIV MGMGEPL N V S+ + + G +S +RIT+ST G +P + E LA Sbjct: 153 NIVYMGMGEPLDNVQAVMDSIEVMTSPWGYDWSPKRITVSTIGIIPAMMTFLENSKAHLA 212 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLH+ +D R ++PI YP+ ++ R + L + RR++FEY+M KG+ND+PR A Sbjct: 213 VSLHSPFDDERRDIMPIQSVYPITEVVSNIRRW-ELGSQRRVSFEYIMFKGVNDTPRHAN 271 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L+++L GI +INLI F+P P + +DIV F +K G + IR RG DI A Sbjct: 272 ELVRLLNGIKCRINLIRFHPIPDTPLEGTALEDIVDFQNRLKAKGLTVTIRASRGEDIFA 331 Query: 361 ACGQLKSLS 369 ACG L + Sbjct: 332 ACGMLSTKE 340 >gi|329936699|ref|ZP_08286406.1| Ribosomal RNA large subunit methyltransferase N [Streptomyces griseoaurantiacus M045] gi|329303929|gb|EGG47812.1| Ribosomal RNA large subunit methyltransferase N [Streptomyces griseoaurantiacus M045] Length = 370 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 126/368 (34%), Positives = 181/368 (49%), Gaps = 23/368 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + E +EA+ IG R Q+ + + R D Q +DI R L + Sbjct: 22 RHLADLSPAERKEAVSAIG----EKPFRAKQLSQHYFARYSHDPQEWTDIPAASRGRLRE 77 Query: 67 HFSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +V D TRK L R + +E+V + R T+C+SSQ GC Sbjct: 78 ALLPELMTVVRHLSTDADTTRKTLWRLFDGTL-----VESVLMRYPDRVTMCISSQAGCG 132 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG L RNL+ EI+ Q++ G + IP ++SNIV M Sbjct: 133 MNCPFCATGQAGLDRNLSTAEIVHQIV---------DGMRALRDGEIPGGPARLSNIVFM 183 Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 GMGEPL N++ V ++ +D GL S+R IT+ST G VP I R +E LAIS Sbjct: 184 GMGEPLANYNRVVAAIRRLTDPEPDGLGLSQRGITVSTVGLVPAIHRFTDEGFKCRLAIS 243 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA ++LR+ LVP+N ++ + ++DA Y S R++ EY +++ IND L Sbjct: 244 LHAPDDELRDTLVPVNTRWKVREVLDAGFEYAARSGR-RLSIEYALIRDINDQAWRGDRL 302 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LKG P +NLIP NP PG ++ S +D F E I G +R RG +I AC Sbjct: 303 GRLLKGRPVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTVRDTRGQEIDGAC 362 Query: 363 GQLKSLSK 370 GQL + + Sbjct: 363 GQLAATER 370 >gi|327402251|ref|YP_004343089.1| 23S rRNA m(2)A-2503 methyltransferase [Fluviicola taffensis DSM 16823] gi|327317759|gb|AEA42251.1| 23S rRNA m(2)A-2503 methyltransferase [Fluviicola taffensis DSM 16823] Length = 359 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 132/371 (35%), Positives = 202/371 (54%), Gaps = 24/371 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++ + EEL+ A++ G P R Q+++WI+ + + DF M++I + ++ L + Sbjct: 6 INIRNLNLEELKAAIVGFGEPA----FRAKQVYEWIWKKNVHDFNAMANIGKSLQEKLQE 61 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 +F I D++IS D T K G +E V IP +R T C+SSQVGCSL Sbjct: 62 NFYFDGITIEDQQISVDKTIKCAF----GIEGQSQVVEGVLIPTTNRMTACISSQVGCSL 117 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 +C+FC TG K++RNL+A EI+ QV+ ++L +SNIV MG Sbjct: 118 SCAFCATGRLKMMRNLSAGEIVDQVVYLKNL-------------ATGKYNTNLSNIVYMG 164 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 MGEPL N+ NV +S+ I +D GL S +RIT+ST+G I ++G++ + LA+SLHA Sbjct: 165 MGEPLLNYKNVVRSVDILTDENGLGMSPKRITVSTAGIAKMIRKLGDDDVKFNLALSLHA 224 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ R+ ++ IN L+ L +A Y R+TFEY++ K ND DA L Sbjct: 225 ANDVKRSKIMDINDTNNLDELSEALL-YFHEKTGSRVTFEYIIFKDFNDGLEDARELADF 283 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRS-GYSSPIRTPRGLDILAACGQ 364 K +P KIN+I +NP EY +D++ + F+ ++ +R RG DI AACGQ Sbjct: 284 AKVVPCKINIIEYNPIDDGEYQQADRQKVDDFARFLEEKCNLIVNVRRSRGKDIDAACGQ 343 Query: 365 LKSLSKRIPKV 375 L + +K I K Sbjct: 344 LANKNKMIDKR 354 >gi|239928666|ref|ZP_04685619.1| hypothetical protein SghaA1_10605 [Streptomyces ghanaensis ATCC 14672] gi|291436989|ref|ZP_06576379.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291339884|gb|EFE66840.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 368 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 124/369 (33%), Positives = 182/369 (49%), Gaps = 25/369 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + E +EA+ G R Q+ + + R D + +DI R L + Sbjct: 20 RHLADLTPAERKEAVAAAG----EKPFRAKQLSQHYFARYAHDPEQWTDIPAGSRARLRE 75 Query: 67 HFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +V +S D TRK L + + +E+V + R T+C+SSQ GC Sbjct: 76 ALLPELMTVV-RHLSTDQGTTRKTLWKLFDGTL-----VESVLMRYPDRVTMCISSQAGC 129 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EI+ Q++ G + +P ++SNIV Sbjct: 130 GMNCPFCATGQAGLDRNLSTAEIVHQIV---------DGMRALRDGEVPGGPTRLSNIVF 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 MGMGEPL N++ V ++ +D GL S+R IT+ST G VP I R +E LAI Sbjct: 181 MGMGEPLANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAIHRFSDEGFKCRLAI 240 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++LR+ LVP+N ++ + ++DA Y S R++ EY +++ IND Sbjct: 241 SLHAPDDELRDTLVPVNTRWKVREVLDAGFAYAARSGR-RLSIEYALIRDINDQAWRGDR 299 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++LKG P +NLIP NP PG ++ S +D F E I G IR RG +I A Sbjct: 300 LGRLLKGRPVHVNLIPLNPTPGSQWTASRPEDEKAFVEAIAAHGVPVTIRDTRGQEIDGA 359 Query: 362 CGQLKSLSK 370 CGQL + + Sbjct: 360 CGQLAASER 368 >gi|38234081|ref|NP_939848.1| hypothetical protein DIP1502 [Corynebacterium diphtheriae NCTC 13129] gi|81564752|sp|Q6NGK9|RLMN_CORDI RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|38200343|emb|CAE50029.1| Conserved hypothetical protein [Corynebacterium diphtheriae] Length = 368 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 119/376 (31%), Positives = 186/376 (49%), Gaps = 31/376 (8%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 F+ + + +E +AL ++G+P + R +QI + Y R D M+D+ R Sbjct: 17 RFMPPKHFADLSADERIDALKELGLP----KFRANQIARHYYGRLEADPSTMTDLPAAAR 72 Query: 62 HLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 + + V + DG T+K L + + +E+V + +R TLC+SS Sbjct: 73 EKVKDALFPQLMQPVRAVQADDGETQKTLWKLHDGTL-----LESVLMRYPNRATLCISS 127 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC + C FC TG L RNL+ EI+ QV A + + G ++S Sbjct: 128 QAGCGMACPFCATGQGGLDRNLSTGEIVDQVRAA--------------SATMQAEGGRLS 173 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGV 237 NIV MGMGEPL N+ V ++ + G S+R +T+ST G P I ++ +E + V Sbjct: 174 NIVFMGMGEPLANYKRVVSAVRQITAPVPEGFGISQRNVTVSTVGLAPAIRKLADEDLSV 233 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 LA+SLH ++LRN LVP N ++ + ++DA R+Y S R++ EY +++ +ND Sbjct: 234 TLAVSLHTPDDELRNTLVPTNNRWEVAEVLDAARYYADRSGR-RVSIEYALIRDVNDQGW 292 Query: 298 DALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 A L K L G +NLIP NP PG ++ S F + + G + +R R Sbjct: 293 RADMLGKKLHKALGPLVHVNLIPLNPTPGSKWDASPMDRQKEFVQRVIAQGVTCTVRDTR 352 Query: 355 GLDILAACGQLKSLSK 370 G +I AACGQL + + Sbjct: 353 GQEIAAACGQLAAEER 368 >gi|325105966|ref|YP_004275620.1| 23S rRNA m(2)A-2503 methyltransferase [Pedobacter saltans DSM 12145] gi|324974814|gb|ADY53798.1| 23S rRNA m(2)A-2503 methyltransferase [Pedobacter saltans DSM 12145] Length = 351 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 125/365 (34%), Positives = 191/365 (52%), Gaps = 24/365 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K + E L +++ R +QI++WI+ + F M++IS+++R L Sbjct: 7 KLDIRSFSLENLRSKFIEL----NEKPFRANQIYEWIWKKSATTFDEMTNISKDLRDKLK 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + F I +I + S D T K + IE V IP R T CVSSQVGCS Sbjct: 63 EIFVINAVKINSSQFSSDKTIKNSFILHDTHL-----IEGVLIPTPERMTACVSSQVGCS 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTC FC TG RNL +EI QV+L + + G ++NIV M Sbjct: 118 LTCKFCATGYMDRKRNLNPDEIYDQVVLIDKQAKE-------------NYGIPLTNIVYM 164 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 GMGEPL N+ NV KS+ + GL+ + +RIT+ST+G I ++G++ + LA+SLH Sbjct: 165 GMGEPLLNYANVLKSIERITSEDGLNMASKRITVSTAGIAKMIKKLGDDNVKFNLALSLH 224 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++ RN ++PIN + L+ L +A +++ + +T+EY++ ND DA L K Sbjct: 225 AANDQKRNEIMPINEQNSLQALAEALKYFYAKT-KNPVTYEYIVFNDFNDGIEDARELAK 283 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 K IP K+N+I +NP ++ + + I F+E +++ G ++ IR RG DI AACGQ Sbjct: 284 FCKHIPCKVNIIEYNPISFADFANAQEDKIEAFAEHLRKQGVTTNIRRSRGKDIDAACGQ 343 Query: 365 LKSLS 369 L Sbjct: 344 LAVKE 348 >gi|296139393|ref|YP_003646636.1| radical SAM enzyme, Cfr family [Tsukamurella paurometabola DSM 20162] gi|296027527|gb|ADG78297.1| radical SAM enzyme, Cfr family [Tsukamurella paurometabola DSM 20162] Length = 371 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 122/373 (32%), Positives = 194/373 (52%), Gaps = 32/373 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + +EL++A++ +G+P + R +Q+ + Y R D M+D+ R + + Sbjct: 19 RHLADLTDDELQQAVVDLGLP----KFRANQLARHYYGRLEADAATMTDLPASARGTVGE 74 Query: 67 HFSIIYPEIVD--EKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + PE++ I+ D TRK L R + +E+V + R TLC+SSQ Sbjct: 75 A---LLPELMSPIRHIATDSGTTRKTLWRLHDGTL-----LESVLMRYTDRATLCISSQA 126 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RNL+ EI+ QV A + D + ++SN+ Sbjct: 127 GCGMACPFCATGQGGLDRNLSTAEIVDQVRSAAKAMQDGD---------VAGGPGRLSNV 177 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239 V MGMGEPL N+ V +++ + GL S+R +T+ST G P I ++ +E + V L Sbjct: 178 VFMGMGEPLANYKRVVQAVRRITSPAPEGLGISQRHVTVSTVGLAPAIRKLADEGLSVTL 237 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH ++LR+ LVP+N ++ + ++DA R+Y + R++ EY +++ +ND P A Sbjct: 238 AVSLHTPDDELRDTLVPVNNRWSVAEVLDAARYYADQTGR-RVSIEYALIRDVNDQPWRA 296 Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L + L+ G A +NLIP NP PG E+ S + F + G S +R RG Sbjct: 297 DMLGEKLRTKLGQFAHVNLIPLNPTPGSEWDASPKDRQDEFVRRVIAQGVSCTVRDTRGQ 356 Query: 357 DILAACGQLKSLS 369 +I AACGQL + Sbjct: 357 EIAAACGQLAAEE 369 >gi|296123027|ref|YP_003630805.1| radical SAM protein [Planctomyces limnophilus DSM 3776] gi|296015367|gb|ADG68606.1| radical SAM enzyme, Cfr family [Planctomyces limnophilus DSM 3776] Length = 408 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 120/364 (32%), Positives = 180/364 (49%), Gaps = 26/364 (7%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 + EL + + G+P R QI + I+ F M+++ ++R LL F Sbjct: 58 IYEKSPAELVQWCQEQGLPT----YRAGQIQQQIFPNRATQFGEMTNLPAKLRELLAATF 113 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 +++ E+V +I+ D T K LL+ + +E V + E R T+C+S+QVGC + C Sbjct: 114 TLLPSEVVAHQIAKDRTEKLLLQLHDGSL-----VECVLMREDDRRTICISTQVGCGMGC 168 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC +G L RNLT EIL QVL LL K++N+V+MGMG Sbjct: 169 VFCASGLLGLKRNLTTGEILEQVLRLDRLL---------------PADEKLTNVVVMGMG 213 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVS 247 EPL N N+ +L + GL RRIT+ST G I + + LA+SLHA Sbjct: 214 EPLANLKNLLPALDRLTADDGLGLGARRITVSTVGLPEKIRELAQTGHQFNLAVSLHAPE 273 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 +LR LVP+N+ +E +++A Y ++ R+++EYV+L GIND P A L +LK Sbjct: 274 AELRTKLVPVNKNIGIEAVLEAADDYFAITGR-RVSYEYVLLGGINDLPEHARQLGHLLK 332 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 A +NLIP N + F ++ G +R +G DI AACGQL+ Sbjct: 333 SRIAHVNLIPMNGVKELPFAEPSAPQTGEFVAILESFGVPVTVRKRKGADIDAACGQLRM 392 Query: 368 LSKR 371 ++ Sbjct: 393 KREQ 396 >gi|113955511|ref|YP_731551.1| ribosomal RNA large subunit methyltransferase N [Synechococcus sp. CC9311] gi|123132407|sp|Q0I7M1|RLMN_SYNS3 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|113882862|gb|ABI47820.1| radical SAM enzyme, Cfr family protein [Synechococcus sp. CC9311] Length = 346 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 128/370 (34%), Positives = 188/370 (50%), Gaps = 37/370 (10%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN-QH 67 L+G + ELEE + G P R Q+ W+Y +G+RD QG++ + + R L + Sbjct: 5 LLGRSKSELEEWAVAQGQPA----FRGRQLHDWLYAKGVRDLQGITVLPKAWRASLQNEG 60 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 S+ + ++S D T K LL +ETV IP R T+CVSSQVGC + Sbjct: 61 VSVGRLHEQERRVSADATTKLLLGTED-----GETLETVGIPTDQRLTVCVSSQVGCPMA 115 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC TG L R+L EI+ QVL R ++ R+ S++V MGM Sbjct: 116 CRFCATGKGGLQRSLAGHEIVAQVLSIREVM-----------------ERRPSHVVFMGM 158 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIGVMLA 240 GEPL N + V +S+ +D L +RRIT+ST G + R+ + LA Sbjct: 159 GEPLLNIEAVLESIRCLNDD--LGIGQRRITVSTVGVPHTLPRLADLALKQLGRAQFTLA 216 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA + LR L+P + YP + L+D CR+Y + R++FEY++L G+ND P A Sbjct: 217 VSLHAPNQALREELIPTAKTYPYDALLDDCRYYLNKTGR-RVSFEYILLGGVNDHPHHAS 275 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L + G + +NLI +NP E+ + I F ++R G + +R RGLD A Sbjct: 276 ELADRVGGFQSHVNLIAYNPIEEEEFQRPTTQRIEGFRRVLERRGVAVSLRASRGLDQDA 335 Query: 361 ACGQLKSLSK 370 ACGQL+ + Sbjct: 336 ACGQLRRNRR 345 >gi|257785159|ref|YP_003180376.1| radical SAM enzyme, Cfr family [Atopobium parvulum DSM 20469] gi|257473666|gb|ACV51785.1| radical SAM enzyme, Cfr family [Atopobium parvulum DSM 20469] Length = 372 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 112/361 (31%), Positives = 177/361 (49%), Gaps = 28/361 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K L + E++ + + +G P + R QI +WI+ +G F MS++ + +R L+ Sbjct: 32 KSDLRSLSSEQILDLVTSLGQP----KFRAKQIEEWIWSKGATSFDQMSNLPKTLREELS 87 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + E V ++S DG+RK+LLR+P +E V +P ++ ++C S+Q GC+ Sbjct: 88 KQVILAGAEQVVRQVSEDGSRKYLLRYPD-----GTSVECVGMPNGNKLSVCASTQAGCA 142 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC TG L R+L+A EI QV+ R +++++V+M Sbjct: 143 MGCAFCATGASGLTRSLSASEIYEQVMHVRD-----------------DFDTRVTSVVLM 185 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244 G GEP N+D ++ + G R IT+ST G +P I R E LA+SLH Sbjct: 186 GQGEPFMNYDATLTAMRRLNSPDGAGIGARHITVSTCGVIPMIKRFASEPEQFTLAVSLH 245 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 + R+ L+P RKY L L D Y + R T+EY ++KG+NDS + L Sbjct: 246 SAVQKTRDALMPGVRKYSLIHLYDIMGEYVDKTGR-RPTYEYALIKGVNDSDNELGALRD 304 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +G +N+I N G ++ + F + G + IR RG DI AACGQ Sbjct: 305 FCRGTLCHVNIIQLNEIEGSKFHPTSPARAQEFVNSLNSVGVEATIRLSRGSDIDAACGQ 364 Query: 365 L 365 L Sbjct: 365 L 365 >gi|34541648|ref|NP_906127.1| ribosomal RNA large subunit methyltransferase N [Porphyromonas gingivalis W83] gi|81416860|sp|Q7MTB0|RLMN_PORGI RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|34397966|gb|AAQ67026.1| conserved hypothetical protein TIGR00048 [Porphyromonas gingivalis W83] Length = 341 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 133/359 (37%), Positives = 190/359 (52%), Gaps = 30/359 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+GM EEL L++G+P R Q+ +WIYVR DF M++ISQ R L + + Sbjct: 2 LLGMSLEELTTVALRMGMP----RFAGKQLAEWIYVRRATDFAEMTNISQANRQKLAEIY 57 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 + D + S DGT+K+L +G +E+V IPE R TLC+SSQVGC + C Sbjct: 58 DLGRYPWSDVQCSVDGTKKYLF-----PVGEGRFVESVLIPEGDRATLCISSQVGCKMDC 112 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG Q NL+A EIL Q+ +++N+V MGMG Sbjct: 113 LFCMTGKQGWNGNLSAAEILNQIFSV-------------------DEAAELTNLVYMGMG 153 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN 248 EPL N D V +S+ ++ G+ +S +RIT+ST G + R E LA+SLH+ Sbjct: 154 EPLDNTDEVLRSIEALTEPWGMGWSPKRITVSTIG-AKGLERFLAESRCHLAVSLHSPFP 212 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 + R L+P + +P+ +D R Y S RR++FEY++ G+ND R A L IL+G Sbjct: 213 EERRKLMPGEKAFPIMQTLDRIRAY-DFSGQRRVSFEYIVFDGLNDDMRHADELAAILRG 271 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 IP +INLI F+ P SD + F + ++ G++ IR RG DI AACG L + Sbjct: 272 IPCRINLIRFHKIPAVSLRSSDTARMEAFRKRMESHGFTCTIRASRGEDIFAACGMLST 330 >gi|325108721|ref|YP_004269789.1| 23S rRNA m(2)A-2503 methyltransferase [Planctomyces brasiliensis DSM 5305] gi|324968989|gb|ADY59767.1| 23S rRNA m(2)A-2503 methyltransferase [Planctomyces brasiliensis DSM 5305] Length = 358 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 129/383 (33%), Positives = 201/383 (52%), Gaps = 27/383 (7%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M+ K S++ + LE + G P R R QI++WIY R + ++ M+D+ ++ Sbjct: 1 MSSDAKPSVLSLDLPALETWCAENGQP----RFRAEQIFRWIYARRAQSWEEMNDLPAKL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L + FS+ E+ ++ D T K LL+ +E V + E R T+C+S+ Sbjct: 57 RTALAEQFSLFNSEVETHSVATDRTEKLLLKLRD-----GEFVECVLMREPDRNTICIST 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC + C FC +G L RNL EIL QV L D K++ Sbjct: 112 QVGCGMGCVFCASGLAGLTRNLQTAEILEQVARLDRLQSD---------------DEKLT 156 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVML 239 N+V+MGMGEPL N + +L ++GL+ RRIT+ST G I ++ L Sbjct: 157 NVVVMGMGEPLANLKQLLPALERMQHALGLNLGVRRITVSTVGLPDRIRQLAAHGKPYNL 216 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA ++ LR+ +VP+N K L+ ++ A Y + RR+T+EYV+LKGINDS A Sbjct: 217 AVSLHAPNDKLRDEIVPVNDKIGLDAVLSAADEYFE-TTGRRVTYEYVLLKGINDSLEHA 275 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L ++L G A +NLIP N S + F+ ++++G ++ IR +G DI Sbjct: 276 HELAEVLAGRNAHVNLIPMNAVSLLSIGGSSPQQARQFAAILEQAGTAATIRKRKGADID 335 Query: 360 AACGQLK-SLSKRIPKVPRQEMQ 381 AACGQL+ +++P V + +++ Sbjct: 336 AACGQLRLPKVQQMPDVQQLKVK 358 >gi|251799946|ref|YP_003014677.1| radical SAM enzyme, Cfr family [Paenibacillus sp. JDR-2] gi|247547572|gb|ACT04591.1| radical SAM enzyme, Cfr family [Paenibacillus sp. JDR-2] Length = 356 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 128/377 (33%), Positives = 204/377 (54%), Gaps = 27/377 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + S+ G ++L L + G H + R +Q+W+++Y + + F M+D+ + L Sbjct: 1 MSTASIYGFTLDQLTAWLGERG----HKKFRATQVWEYLYRKRVTSFADMTDVHPDCVKL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L ++++I +++S DGT K LL+ + IETV + K ++CV++QVG Sbjct: 57 LEENYAIQTLVEHTKQVSKDGTVKLLLKLDDGNL-----IETVMMRHKFGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ CSFC +G K R+LT+ EI+ Q++ + L + G K+S+IV Sbjct: 112 CNIGCSFCASGLLKKSRDLTSGEIVEQIMKIQLHLDE------------SGQGEKVSHIV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAIS 242 +MG+GEP NF ++ L+ D GL+ R IT+STSG I ++ V LA+S Sbjct: 160 VMGIGEPFDNFIHLNDFLTTVKDHKGLAIGPRHITVSTSGLADKIREFADKDQGVNLAVS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR ++ INR P+E L+DA +Y +N RIT EY++LK +ND P AL L Sbjct: 220 LHAPNNELRTRIMKINRAIPIEKLMDAIDYYLERTNR-RITLEYILLKDVNDQPEHALEL 278 Query: 303 IKIL---KGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 +++ + +NLIP+NP +Y S+ I F + +K+ S +R G DI Sbjct: 279 AELVGDRRRSLVNVNLIPYNPVDEHSQYQRSENDSIKGFYDTLKKQDVSVSVRLEHGADI 338 Query: 359 LAACGQLKSLSKRIPKV 375 AACGQL+S K Sbjct: 339 DAACGQLRSKQMNKEKA 355 >gi|329962041|ref|ZP_08300052.1| 23S rRNA m2A2503 methyltransferase [Bacteroides fluxus YIT 12057] gi|328530689|gb|EGF57547.1| 23S rRNA m2A2503 methyltransferase [Bacteroides fluxus YIT 12057] Length = 346 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 130/373 (34%), Positives = 194/373 (52%), Gaps = 29/373 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K+ L+G+ EL+ + +G+P QI W+Y + + M+++S + R Sbjct: 1 MQKQPLLGLTLSELQSVVKNLGMPG----FAARQIASWLYDKKVTSIDEMTNLSLKHREY 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L + + VD S DGT K+L + G +E VYIP++ R TLCVSSQVG Sbjct: 57 LKDAYEVGAAAPVDAMRSIDGTVKYLYQ-----AGEGHFVEAVYIPDEDRATLCVSSQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG Q NLTA +I+ Q+ K++N+V Sbjct: 112 CKMNCKFCMTGKQGFTANLTANQIINQI-------------------SSLPERDKLTNVV 152 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N D V K+L I + S G S+S +RITLS+ G + R EE LA+SL Sbjct: 153 MMGMGEPLDNLDEVLKALEIMTASYGYSWSPKRITLSSVGLRKGLQRFIEESDCHLAVSL 212 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H R L+P + + + +++ R+Y S RR++FEY++ KG+NDS A L+ Sbjct: 213 HTPVPLQRRELMPAEKAFSITEIVELLRNY-DFSKQRRLSFEYIVFKGVNDSLLYAKELL 271 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+L+G+ +INLI F+ PG +D + + T + + G + IR RG DI AACG Sbjct: 272 KLLRGLDCRINLIRFHAIPGVGLEGADMETMTTLRDYLTSHGLFTTIRASRGEDIFAACG 331 Query: 364 QLKSLSKRIPKVP 376 L + + K Sbjct: 332 MLSTAKQEENKQE 344 >gi|262066381|ref|ZP_06025993.1| radical SAM enzyme, Cfr family [Fusobacterium periodonticum ATCC 33693] gi|291379946|gb|EFE87464.1| radical SAM enzyme, Cfr family [Fusobacterium periodonticum ATCC 33693] Length = 358 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 130/380 (34%), Positives = 204/380 (53%), Gaps = 34/380 (8%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN +K +++ + +EEL E L+ +G+ + +++ W++ + IR+F M+++S + Sbjct: 1 MNN-EKINILNLTQEELTEFLVSLGL----KKFYGKEVFIWLHKKIIRNFDDMTNLSLKD 55 Query: 61 RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS------R 113 R +L ++ I + ++ ++S D T K+L + IETV + + R Sbjct: 56 REILKENAYIPFFNLLKHQVSKLDKTEKFLFELEDKGT-----IETVLLRHRDSKNKEIR 110 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 TLCVSSQVGC + CSFC TG +RNL+ EIL QV + Sbjct: 111 NTLCVSSQVGCPVKCSFCATGQGGYMRNLSVSEILNQVYTVER--------------RLR 156 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VG 232 ++N+V MGMGEPL N DN+ +LSI S+ G++ SKR+IT+STSG VP I + + Sbjct: 157 KKDESLNNLVFMGMGEPLLNIDNLSTALSIISNENGINISKRKITISTSGVVPGIEKILL 216 Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 E+I + LA+SLH+ N+ R+ ++PIN+ +PLE L Y + RITFEY+++ Sbjct: 217 EKIPIELAVSLHSAINEKRDQIIPINKNFPLEDLSAVLVEYQKQTKR-RITFEYILIDNF 275 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIR 351 N S DA L + +NLIP+N G E+ K I F +K + +R Sbjct: 276 NISEVDANALADFIHQFDHVVNLIPYNEVEGVEHTRPSMKKIERFYNYLKNVRKVNVTLR 335 Query: 352 TPRGLDILAACGQLKSLSKR 371 +G DI ACGQL+ +K+ Sbjct: 336 QEKGSDIDGACGQLRQRNKK 355 >gi|159036879|ref|YP_001536132.1| radical SAM protein [Salinispora arenicola CNS-205] gi|205829873|sp|A8M6B6|RLMN_SALAI RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|157915714|gb|ABV97141.1| radical SAM enzyme, Cfr family [Salinispora arenicola CNS-205] Length = 380 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 115/370 (31%), Positives = 177/370 (47%), Gaps = 23/370 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + L + + + ++G P R R Q+ + R +RD M+D+ R Sbjct: 20 MPPRHLADLDLAGRQALVAELGEP----RFRARQVSTHYFGRLVRDSGQMTDLPAAAREK 75 Query: 64 LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L V E DG T K L R + +E+V + R T C+SSQ Sbjct: 76 LTDRLLPTLLTPVRELTCDDGATHKALWRLHDGSL-----VESVLMGYPDRVTACLSSQA 130 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RNL+ EI+ Q + + ++S + Sbjct: 131 GCGMACPFCATGQAGLTRNLSTAEIVDQAVYL---------AGVAASGAVAGSPPRLSRV 181 Query: 183 VMMGMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239 V MGMGEPL N++ V ++ GL S+R +T+ST G VP I R+ E++ V L Sbjct: 182 VFMGMGEPLANYNRVVAAIRRLVAPAPEGLGLSQRHVTVSTVGLVPAIRRLASEDLSVTL 241 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA + LR+ LVP+N+++ + +++ Y + R++ EY M+K +ND P A Sbjct: 242 ALSLHAPDDGLRDELVPVNQRWKVSEVLETAWEYAARTGR-RVSIEYAMIKDVNDQPWRA 300 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L ++L G A +NLIP NP PG + S + F ++ +G S+ +R RG +I Sbjct: 301 DLLGRLLAGKLAHVNLIPLNPTPGSRWDASPKPVEREFVRRLRDAGVSTTVRDTRGREID 360 Query: 360 AACGQLKSLS 369 ACGQL + Sbjct: 361 GACGQLAAAE 370 >gi|289548506|ref|YP_003473494.1| radical SAM enzyme, Cfr family [Thermocrinis albus DSM 14484] gi|289182123|gb|ADC89367.1| radical SAM enzyme, Cfr family [Thermocrinis albus DSM 14484] Length = 347 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 128/365 (35%), Positives = 206/365 (56%), Gaps = 33/365 (9%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 ++G EEL E ++ +G+ R R QI W+Y +G+ DF M++IS+ R +L + F Sbjct: 4 ILGYTLEELREEVVSLGLE----RYRADQILNWVYKKGVTDFSLMTNISKRDRQVLAERF 59 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 S +++D+ + D + K+L + +ETV I E+ TLCVSSQVGC++ C Sbjct: 60 SFHTLQMIDKVEAPD-SVKYLFKTED-----GHTVETVLIKERDHLTLCVSSQVGCAVGC 113 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 SFC T L+RNL EEI+ Q + + ++I N+V MGMG Sbjct: 114 SFCATARDGLLRNLRTEEIIDQFIQVQK-----------------DSPQRIRNVVFMGMG 156 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI---GVMLAISLHA 245 EPL N++NV+K++ + GL SKRR+++STSG + + ++ ++ + LA+S++A Sbjct: 157 EPLANYENVRKAVKVMISPWGLDLSKRRVSVSTSGIISQLKKMAQDPVMRELNLAVSINA 216 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 S +LR ++PI++ PL L++ YP RRI EYV+++ +ND P AL L ++ Sbjct: 217 PSQELRERIMPISKTNPLHELMEVLYQYPY-PPDRRIMLEYVLIEKVNDEPEHALQLAQL 275 Query: 306 LKGIP--AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 LKG P K+NLIP+NP P Y + + F + + +G S+ +R +G+ + ACG Sbjct: 276 LKGNPKKFKVNLIPYNPDPELPYRRPPLERVYRFQKILWDNGISTFVRFSKGVQVFGACG 335 Query: 364 QLKSL 368 QL+S Sbjct: 336 QLRSR 340 >gi|171742890|ref|ZP_02918697.1| hypothetical protein BIFDEN_02007 [Bifidobacterium dentium ATCC 27678] gi|171278504|gb|EDT46165.1| hypothetical protein BIFDEN_02007 [Bifidobacterium dentium ATCC 27678] Length = 393 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 126/375 (33%), Positives = 190/375 (50%), Gaps = 28/375 (7%) Query: 6 KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 K L M +E ++G+P R R Q+ Y D + SD R Sbjct: 38 KPPLHFADMSEDERIAKAKELGLP----RFRVKQLANHYYGHFDVDAEEFSDFPANKRAE 93 Query: 64 LNQHFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + F V +++ +GT K L R + IE+V + +R TLC+SSQV Sbjct: 94 AAEAFFPTLITEVTRQVADEGTTIKTLWRLFDGSL-----IESVLMRYPTRTTLCISSQV 148 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RN++A EI+ QV +A + D + ++SNI Sbjct: 149 GCGMGCPFCATGKLGLTRNMSAGEIVEQVRVAAKAMRD---------GEVAGGPGRLSNI 199 Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239 V MGMGEP+ N+ +V ++ S G S R IT+ST G VP I ++ E I V L Sbjct: 200 VFMGMGEPMGNYRSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRL 259 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA S++LR+ LVP+N+++ ++DA Y L++ RR++ EY +++GIND A Sbjct: 260 AVSLHAPSDELRDELVPMNKRFDTTQVLDAAHDYY-LASKRRVSIEYALMRGINDQAEHA 318 Query: 300 LNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L K L A +N IP NP G ++ S +D F + + ++G ++ +R RG Sbjct: 319 RLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDERRFLDILHQAGVTATLRDTRGQ 378 Query: 357 DILAACGQLKSLSKR 371 DI ACGQL + ++ Sbjct: 379 DIDGACGQLAAKERQ 393 >gi|111023545|ref|YP_706517.1| hypothetical protein RHA1_ro06586 [Rhodococcus jostii RHA1] gi|123144166|sp|Q0S277|RLMN_RHOSR RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|110823075|gb|ABG98359.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length = 369 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 124/374 (33%), Positives = 191/374 (51%), Gaps = 28/374 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + + L + E EA+ ++G+P R Q+ + Y R D + M+D+ VR Sbjct: 16 MPPKHLADLDSAERREAVKELGLPG----FRADQLARQYYARLEADPEKMTDLPAAVREQ 71 Query: 64 LNQHFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 + V + ++CDG TRK L + + +E+V + R TLC+SSQ Sbjct: 72 VGAALFPTLLTPV-KHLACDGGDTRKTLWKANDGTL-----LESVLMRYPDRATLCISSQ 125 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC + C FC TG L RNL+ EI+ QV A + L D + ++SN Sbjct: 126 AGCGMACPFCATGQGGLQRNLSTAEIVDQVRAAAAALRDGD---------VHGGPGRLSN 176 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238 +V MGMGEPL N+ V ++ + GL S+R +T+ST G P I ++ +E + V Sbjct: 177 VVFMGMGEPLANYKRVVAAVRRITSPAPDGLGLSQRSVTVSTVGLAPAIRKLADEDLSVT 236 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLH ++LR+ LVP+N ++ + ++DA R+Y S R++ EY +++ +ND P Sbjct: 237 LAVSLHTPDDELRDTLVPVNNRWSVAEVLDAARYYADKSGR-RVSIEYALIRDVNDQPWR 295 Query: 299 ALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 A L K L+ G +NLIP NP PG E+ S + F + G S +R RG Sbjct: 296 ADLLGKKLRKALGPLVHVNLIPLNPTPGSEWDASPKPVEKEFVRRVLAQGVSCTVRDTRG 355 Query: 356 LDILAACGQLKSLS 369 +I AACGQL + + Sbjct: 356 QEIAAACGQLAAEN 369 >gi|323699795|ref|ZP_08111707.1| radical SAM enzyme, Cfr family [Desulfovibrio sp. ND132] gi|323459727|gb|EGB15592.1| radical SAM enzyme, Cfr family [Desulfovibrio desulfuricans ND132] Length = 348 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 131/363 (36%), Positives = 197/363 (54%), Gaps = 22/363 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +LI + + +LE + + + R R QIW+W++ + +RD + M+++S+ +R L Sbjct: 2 HNLIELNKTDLEAFVAE---DLKEPRYRAEQIWQWLWQKRVRDVEAMTNLSRPLREKLAG 58 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 +I++PEI S DGT K+LL+ + IETV IP + R + C+S+QVGC++ Sbjct: 59 MANIVWPEIARVAESRDGTIKFLLKLVDGKL-----IETVLIPMQDRYSQCLSTQVGCAM 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC TG RNLT EI+ Q+L+ R L D E + N+V MG Sbjct: 114 ACTFCNTGKLGFERNLTYGEIMGQILVGRQYLADRNMNE-------------LKNLVFMG 160 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N + + + L+ GLS S RR +ST GF + +G+ + AISLHA Sbjct: 161 MGEPLLNLETLVRVLTDLPCERGLSLSWRRSMVSTVGFPDKLKILGDLEIALPAISLHAP 220 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 + +LR ++P + L+ L+ A YP + RITFEY++LK +NDS A L K++ Sbjct: 221 TQELRARIMPKAARVHLDDLMAALSAYP-MRPRERITFEYLLLKDVNDSMEHADQLAKLI 279 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 KINLI +N G Y D+ + F + + G ++ IR G DI AACGQLK Sbjct: 280 DRRKGKINLIAYNATEGMPYGAPDRDRVEAFEKRLWDHGLTAFIRRSMGADIKAACGQLK 339 Query: 367 SLS 369 + S Sbjct: 340 ADS 342 >gi|312143909|ref|YP_003995355.1| radical SAM enzyme, Cfr family [Halanaerobium sp. 'sapolanicus'] gi|311904560|gb|ADQ15001.1| radical SAM enzyme, Cfr family [Halanaerobium sp. 'sapolanicus'] Length = 347 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 134/363 (36%), Positives = 197/363 (54%), Gaps = 24/363 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + L + R EL + L G P R Q++ W+Y GI + + M +I E++ LN Sbjct: 2 KDLKELKRNELIKELKNAGFPA----YRGEQVFNWLYKNGISETEKMKNIPGELKEYLND 57 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS--RGTLCVSSQVGC 124 ++ I + + + DGT K+L IE VY+P R + C+S+QVGC Sbjct: 58 NYEITDLKEKAKSQAADGTIKYLWELKD-----GENIEGVYLPFPESARHSACISTQVGC 112 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 L CSFC TG L RNLT EI+ QVL ++ + E ++SNIV Sbjct: 113 GLGCSFCATGINGLERNLTTAEIIDQVLKIQADISRDEFAEP-----------RLSNIVF 161 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243 MGMGEPL NF+N+ +++ I + GL+ R++T+ST G VP I ++ + + LA+SL Sbjct: 162 MGMGEPLANFENLMQAVEIINSDNGLNIGMRKMTISTVGLVPEIKKLADRNDQIGLAVSL 221 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA ++ LRN ++PIN+KY L L+ A Y + R+TFEYV++ +NDSP A+ L+ Sbjct: 222 HAPNDRLRNKIMPINKKYNLNQLLTAVIDYIEKTGR-RVTFEYVLMDSVNDSPELAVQLV 280 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++L+GI +NLIP NP P QK I +F + +G +R G I AACG Sbjct: 281 ELLRGINCHVNLIPANPVPELNIKKPVQKVIDSFYSTLDNNGIQVSLRREMGSQIDAACG 340 Query: 364 QLK 366 QLK Sbjct: 341 QLK 343 >gi|330752186|emb|CBL87145.1| radical SAM superfamily protein, UPF0063 [uncultured Flavobacteria bacterium] Length = 349 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 125/367 (34%), Positives = 190/367 (51%), Gaps = 23/367 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK + G+ +E + E R Q+++W++ + F M+++S R LL Sbjct: 4 KKRDIRGLSQEAIIEFFEAH----NEQSFRAKQVYQWLWQKSASSFDEMTNLSISTRALL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 N +F+ E+ + S DGT K ++ +E+V IP + R T CVSSQVGC Sbjct: 60 NANFNFNLLEVDLMQRSKDGTIKNAVKLHDGAF-----VESVLIPTEKRITACVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 SL C+FC T + K +RNL +EI QV++ + ++ GR ++NIV Sbjct: 115 SLDCTFCATASLKRMRNLGPDEIYDQVVVIHNQGKEY-------------FGRPLTNIVF 161 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MGMGEPL N++NV ++ +D GL S RRITLST G I R+ ++ + LAISL Sbjct: 162 MGMGEPLLNYNNVLAAIEKITDPKGLGLSPRRITLSTIGVPKLIKRMADDGVKFNLAISL 221 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ + R L+P+ K + + Y R +TFEYV+ K +ND+ +D L Sbjct: 222 HSAIEEKRAKLMPLAHKSATLVDLRESLQYWYAKTGRGVTFEYVIWKDLNDTEQDVKALA 281 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K IP K+N+I +NP Y + Q+ + + E ++ G + IR RG DI AACG Sbjct: 282 KFCGAIPTKVNIIQYNPIDNGPYTQASQEAVNMYKETLESKGIITTIRHSRGQDIDAACG 341 Query: 364 QLKSLSK 370 QL + + Sbjct: 342 QLANKVE 348 >gi|317505349|ref|ZP_07963277.1| cfr family radical SAM enzyme [Prevotella salivae DSM 15606] gi|315663563|gb|EFV03302.1| cfr family radical SAM enzyme [Prevotella salivae DSM 15606] Length = 348 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 131/379 (34%), Positives = 199/379 (52%), Gaps = 31/379 (8%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN K++L+GM EL+EA +G+P QI KW+Y ++ M++IS+ Sbjct: 1 MNS-PKKALLGMTLYELKEACRALGMPA----FTGGQIAKWMYTHHVKQIDEMTNISKNN 55 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L + ++I E +D + S DGT K+L +ETVYIPE R TLCVS Sbjct: 56 RAKLAEAYTIGCNEAIDAQHSKDGTIKYLFPTHDGKF-----VETVYIPENDRATLCVSC 110 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC + C FC TG Q +LT +IL QV + K++ Sbjct: 111 QVGCKMNCLFCQTGKQGFEGSLTTTDILNQVYSLPEVD-------------------KLT 151 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 NIV MG GEP+ N DN+ ++ I + G ++S +RIT+S+ G + R EE +A Sbjct: 152 NIVFMGQGEPMDNLDNILRTTEILTADYGWAWSPKRITVSSVGVKNKLKRFLEESNCHVA 211 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ISLH+ + R L+P + + ++ R+Y S+ RR++FEY++ GINDS A Sbjct: 212 ISLHSPIAEQRAALMPAQKGMSISEIVSLLRNY-DFSHQRRLSFEYIVFGGINDSTTHAR 270 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 ++K+L G+ ++NLI F+ PG +D+K + + + + IR RG DI A Sbjct: 271 EIVKLLNGLDCRVNLIRFHQIPGVPLHGADEKRMEELRDYLTSHDVFTTIRASRGQDIFA 330 Query: 361 ACGQLKSLSKRIPKVPRQE 379 ACG L S SK+I ++ ++ Sbjct: 331 ACGLL-STSKKIGEIRHEQ 348 >gi|257055048|ref|YP_003132880.1| ribosomal RNA large subunit methyltransferase N [Saccharomonospora viridis DSM 43017] gi|256584920|gb|ACU96053.1| radical SAM enzyme, Cfr family [Saccharomonospora viridis DSM 43017] Length = 370 Score = 381 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 123/373 (32%), Positives = 187/373 (50%), Gaps = 23/373 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 L + L + E EA++ +G R Q+ + R D + M+DI R Sbjct: 12 LPRRHLADLTVTERAEAVVALG----EKPFRAKQLSHHYFSRLTVDPEAMTDIPAASRRR 67 Query: 64 LNQHFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L V + CDG TRK L R + +E+V + R TLC+SSQ Sbjct: 68 LVDELMPPLLTQV-RAVDCDGGSTRKTLWRAHDGTL-----VESVLMRYPDRATLCISSQ 121 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC + C FC TG L RNL+ EI+ QV A +++ D + G ++SN Sbjct: 122 AGCGMACPFCATGQGGLTRNLSTAEIVDQVRAAAAVMRDGL----MPGPDGAPKPGRLSN 177 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238 IV MGMGEPL N+ V ++ +D GL S+R +T+ST G P I ++ +E + V Sbjct: 178 IVFMGMGEPLANYKRVLAAVRRITDPPPAGLGISQRSVTVSTVGLAPAIRKLADEGLQVR 237 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLH ++LR+ LVP+N ++ ++ ++ A R+Y + R++ EY +++ IND P Sbjct: 238 LAVSLHTPDDELRDELVPVNNRWSVDEVLRAARYYADRTGR-RVSIEYALIRDINDQPWR 296 Query: 299 ALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 A L K L+ G +N+IP NP PG ++ S + F + G + +R RG Sbjct: 297 ADLLAKRLREHLGQLVHVNVIPLNPTPGSKWDASPKPVEREFVRRVNAGGVACTVRDTRG 356 Query: 356 LDILAACGQLKSL 368 +I AACGQL + Sbjct: 357 QEIAAACGQLAAE 369 >gi|221195097|ref|ZP_03568153.1| radical SAM enzyme, Cfr family [Atopobium rimae ATCC 49626] gi|221185000|gb|EEE17391.1| radical SAM enzyme, Cfr family [Atopobium rimae ATCC 49626] Length = 361 Score = 381 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 120/368 (32%), Positives = 182/368 (49%), Gaps = 28/368 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K L + E+ E + +G P + R Q+ W++ +G F MS++ + +R L Sbjct: 21 KRGLKTLSHAEIVELVENLGQP----KFRAKQLEDWMWSKGATSFDQMSNLPKSLRAGLA 76 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + S V ++S DG+RK+LL++P V +E V +P ++ +C S+Q GC+ Sbjct: 77 KTVSFQSITQVTRQLSQDGSRKYLLQYPDN-----VCVECVGMPTGNKLAVCASTQAGCA 131 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC TG L R+L+A EI QVL R+ ++S++V M Sbjct: 132 MGCAFCATGAAGLTRSLSASEIYDQVLHIRN-----------------DFEMRVSSVVFM 174 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244 G GEP N+DN ++L + + GL R +T+ST G +P I R E LA+SLH Sbjct: 175 GQGEPFMNYDNALEALRLLNSPHGLGIGARHLTISTCGVIPMIKRFANEPEQFTLAVSLH 234 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 + R+IL+P RKY L L D Y + R T+EY ++ GINDS + L Sbjct: 235 SAVQKTRDILMPGVRKYSLLHLYDIMGEYVEKTGR-RPTYEYALIGGINDSENELGALRD 293 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +G A +NLI N PG ++ S F + G + IR RG DI AACGQ Sbjct: 294 FCRGTLAHVNLIQLNEIPGSKFHPSTPARAQQFVTKLGEVGVEATIRISRGADIDAACGQ 353 Query: 365 LKSLSKRI 372 L +++ Sbjct: 354 LSQKLRQL 361 >gi|226306037|ref|YP_002765997.1| rRNA methyltransferase [Rhodococcus erythropolis PR4] gi|259491995|sp|C0ZY23|RLMN_RHOE4 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|226185154|dbj|BAH33258.1| putative rRNA methyltransferase [Rhodococcus erythropolis PR4] Length = 369 Score = 381 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 122/373 (32%), Positives = 187/373 (50%), Gaps = 26/373 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + L + E +EA+ ++G+P R Q+ + Y R D + M+D+ VR Sbjct: 16 MPPRHLADLDSAERKEAVKELGLPA----FRADQLARQYYARLEADPEKMTDLPASVREK 71 Query: 64 LNQH-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + + F + I TRK L + + +E+V + R TLC+SSQ Sbjct: 72 VGESLFPTLLTPIKHLACDSGDTRKTLWKAHDGTL-----LESVLMRYPDRATLCISSQA 126 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RNL+ EI+ QV A + + D + ++SN+ Sbjct: 127 GCGMACPFCATGQGGLDRNLSTAEIVDQVREAAAAMRDGD---------VAGGPGRLSNV 177 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239 V MGMGEPL N+ V ++ + GL S+R +T+ST G P I ++ +E + V L Sbjct: 178 VFMGMGEPLANYKRVVAAVRRITSPAPDGLGLSQRSVTVSTVGLAPAIRKLADEGLSVTL 237 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH ++LR+ LVP+N ++ + ++ A R+Y + R++ EY M+K +ND P A Sbjct: 238 AVSLHTPDDELRDTLVPVNNRWSVSEVLQAARYYADKTGR-RVSIEYAMIKNVNDQPWRA 296 Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L K LK G +NLIP NP PG E+ S + F + G S +R RG Sbjct: 297 DMLGKKLKKALGGLVHVNLIPLNPTPGSEWDASPKDVEREFVRRVIAQGVSCTVRDTRGQ 356 Query: 357 DILAACGQLKSLS 369 +I AACGQL + + Sbjct: 357 EIAAACGQLAAEN 369 >gi|182415989|ref|YP_001821055.1| radical SAM protein [Opitutus terrae PB90-1] gi|205829654|sp|B2A0B9|RLMN3_OPITP RecName: Full=Ribosomal RNA large subunit methyltransferase N 3; AltName: Full=23S rRNA m2A2503 methyltransferase 3 gi|177843203|gb|ACB77455.1| radical SAM enzyme, Cfr family [Opitutus terrae PB90-1] Length = 374 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 128/379 (33%), Positives = 198/379 (52%), Gaps = 26/379 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K L G E L L + G P R SQI W+Y + R + GM+++ + +R L+ Sbjct: 7 KPPLTGETLESLTARLRERGEPA----FRASQILDWVYKKRARSWDGMTNLPKPLRTWLD 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP--------EKSRGTLC 117 F ++ +V K S D T K LL + IETV I + SR T+C Sbjct: 63 DTFDLMPATLVLNKQSADVTDKLLLELRDGSL-----IETVIIRAPQEGVGQDHSRKTIC 117 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 +S+QVGC++ C FC +G L R+L+A EI+ Q+L +E Sbjct: 118 ISTQVGCAMGCVFCASGLAGLKRDLSAGEIVAQLLQVCYREDALTPRAHMELASFD---- 173 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IG 236 NIV+MGMGEPL N+D + ++L+I + GL F RRIT+STSG VP I ++ +E +G Sbjct: 174 ---NIVVMGMGEPLANYDALIRALTILNADWGLGFGARRITVSTSGLVPKILQLADEPLG 230 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 LAISLH ++++R ++P+N+ +PL L+ A + + IT E++++ G+NDS Sbjct: 231 FRLAISLHGATDEVREKIMPVNKAFPLAKLLPAVKAFSEKHGRM-ITLEFILIDGVNDSL 289 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 A L I + A +NLIP+N G + F++ ++ S +R +G Sbjct: 290 EQAEKLRDIALDLHAHVNLIPYNTVEGLAWKRPSITRQERFADVLRARRVSVTLRREKGH 349 Query: 357 DILAACGQLKSLSKRIPKV 375 DI AACGQL+ +++ +V Sbjct: 350 DIDAACGQLRLKTEKERQV 368 >gi|293370817|ref|ZP_06617362.1| radical SAM enzyme, Cfr family [Bacteroides ovatus SD CMC 3f] gi|298481513|ref|ZP_06999705.1| radical SAM enzyme, Cfr family [Bacteroides sp. D22] gi|292634033|gb|EFF52577.1| radical SAM enzyme, Cfr family [Bacteroides ovatus SD CMC 3f] gi|295086976|emb|CBK68499.1| 23S rRNA m(2)A-2503 methyltransferase [Bacteroides xylanisolvens XB1A] gi|298272377|gb|EFI13946.1| radical SAM enzyme, Cfr family [Bacteroides sp. D22] Length = 344 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 130/367 (35%), Positives = 198/367 (53%), Gaps = 29/367 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K L+GM EL+ ++G+P QI W+Y + + M+++S + R L Sbjct: 1 MSKYPLLGMTLVELQSLTKRLGMPG----FAAKQIASWLYEKKVASIDDMTNLSLKHREL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L Q++ + VDE S DGT K+L + +G +E+VYIP+ R TLCVSSQVG Sbjct: 57 LKQNYEVGAEAPVDEMRSVDGTVKYLYK-----VGENHFVESVYIPDDDRATLCVSSQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG Q NLTA +I+ Q+ K++N+V Sbjct: 112 CKMNCKFCMTGKQGYTANLTASQIINQI-------------------HSLPERDKLTNVV 152 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N D V K+L + + + G ++S +RITLST G + R EE LAISL Sbjct: 153 MMGMGEPLDNLDEVLKALELLTATYGYAWSPKRITLSTVGLRKGLQRFIEENDCHLAISL 212 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ R L+P + + + +++ ++Y S RR++FEY++ KG+NDS A L+ Sbjct: 213 HSPLTVQRAELMPAEKAFSITEMVELLKNY-DFSKQRRLSFEYIVFKGLNDSQVYAKELL 271 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+L+G+ ++NLI F+ PG + +D + F + + G + IR+ RG DI AACG Sbjct: 272 KLLRGLDCRVNLIRFHAIPGVDLEGADMDTMTRFRDYLTSHGLFTTIRSSRGEDIFAACG 331 Query: 364 QLKSLSK 370 L + + Sbjct: 332 MLSTAKQ 338 >gi|255568836|ref|XP_002525389.1| catalytic, putative [Ricinus communis] gi|223535352|gb|EEF37027.1| catalytic, putative [Ricinus communis] Length = 861 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 139/364 (38%), Positives = 202/364 (55%), Gaps = 27/364 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRG---IRDFQGMSDISQEVRH 62 K L GM ELE+ + G M +WK +Y F + ++++ + Sbjct: 77 KVLLKGMSYTELEKWVQSHGFRPGQAMM----LWKRLYANNNTLAHYFDELEGLNKDFKK 132 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQ 121 +L++H + + D + DGT+K L R + IETV IP ++ R T+CVSSQ Sbjct: 133 MLSEHARLKAISMEDVVTASDGTKKILFRLDDEMV-----IETVIIPCDRGRTTVCVSSQ 187 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC++ C FCYTG L R+LT EI+ QV+ A+ LL G I+N Sbjct: 188 VGCAMNCQFCYTGRMGLKRHLTTAEIVDQVVSAQRLLTSDAGS--------------ITN 233 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 +V MGMGEPL N +NV K+ I GL FS R++T+STSG VP + R E LA+ Sbjct: 234 VVFMGMGEPLQNIENVIKAADIMVHDQGLHFSPRKVTISTSGLVPQLKRFLRESNCALAV 293 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SL+A ++++RN ++PINRKY L +L+D R N ++ FEYVML G+NDS DA Sbjct: 294 SLNATTDEVRNWIMPINRKYNLGLLLDTLRKELHFKNNYKVLFEYVMLAGVNDSLEDAER 353 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L +++GIP KINLI FNP G ++ + ++ ++ F + + + +R RG D +AA Sbjct: 354 LSDLVQGIPCKINLIQFNPHSGSQFRPTSKEKMIEFRNILAEAKCTVFLRDSRGDDQMAA 413 Query: 362 CGQL 365 CGQL Sbjct: 414 CGQL 417 >gi|83816743|ref|YP_446232.1| radical SAM protein [Salinibacter ruber DSM 13855] gi|294508165|ref|YP_003572223.1| Conserved hypothetical protein containing radical SAM domain [Salinibacter ruber M8] gi|123753375|sp|Q2S0P9|RLMN_SALRD RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|83758137|gb|ABC46250.1| radical SAM enzyme, Cfr family [Salinibacter ruber DSM 13855] gi|294344493|emb|CBH25271.1| Conserved hypothetical protein containing radical SAM domain [Salinibacter ruber M8] Length = 369 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 128/375 (34%), Positives = 200/375 (53%), Gaps = 32/375 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 + L M R L++ + + G P R R Q++ W+Y +G+ DF MS++ + +R L Sbjct: 16 DRVDLKTMGRAGLKDFVAEHGAP----RYRGDQLFNWVYGKGVSDFDRMSNLPKRMRRGL 71 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP------EKSRGTLCV 118 + ++ EIV+++ + D T K L P+ E ETV IP E R T+CV Sbjct: 72 QRDATVEDIEIVEQQQAADRTVKALFELPS-----GREAETVLIPAIDERGEARRLTVCV 126 Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 SS+VGC++ C FC TG NLT I QV + + GR Sbjct: 127 SSEVGCAMGCEFCATGRMGFRENLTPGAIFDQVWHMNEVAQE-------------HFGRP 173 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGV 237 ++NIV MGMGEPL N+D V S+SI +D L+ S ++IT+ST G I + ++ + Sbjct: 174 VTNIVFMGMGEPLLNYDAVLDSISILTDEDSLNLSAQKITVSTVGLARRIKDLADDQLRT 233 Query: 238 MLAISLHAVSNDLRNILVPINR--KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 LA+SLHA N+ R+ ++P+N K L L +A ++Y + + IT+EY + KG+NDS Sbjct: 234 NLAVSLHAPDNETRSRIMPVNEAEKTSLPALKEALQYYFDKTGRQ-ITYEYCLFKGVNDS 292 Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 DA NL + + P+K+NL+ +NP G + + + + F + + + G + +R RG Sbjct: 293 ETDARNLADVTRWAPSKVNLLMYNPVEGLNFERTSEAQLDRFVQVLVQEGVTVTVRRSRG 352 Query: 356 LDILAACGQLKSLSK 370 DI AACGQL + + Sbjct: 353 QDIDAACGQLANEGE 367 >gi|229491476|ref|ZP_04385300.1| radical SAM enzyme, Cfr family [Rhodococcus erythropolis SK121] gi|229321761|gb|EEN87558.1| radical SAM enzyme, Cfr family [Rhodococcus erythropolis SK121] Length = 369 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 122/373 (32%), Positives = 187/373 (50%), Gaps = 26/373 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + L + E +EA+ ++G+P R Q+ + Y R D + M+D+ VR Sbjct: 16 MPPRHLADLDSAERKEAVKELGLPA----FRADQLARQYYARLEADPEKMTDLPASVREK 71 Query: 64 LNQH-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + + F + I TRK L + + +E+V + R TLC+SSQ Sbjct: 72 VGESLFPTLLTPIKHLACDSGDTRKTLWKAHDGTL-----LESVLMRYPDRATLCISSQA 126 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RNL+ EI+ QV A + + D + ++SN+ Sbjct: 127 GCGMACPFCATGQGGLDRNLSTAEIVDQVREAAAAMRD---------GEVAGGPGRLSNV 177 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239 V MGMGEPL N+ V ++ + GL S+R +T+ST G P I ++ +E + V L Sbjct: 178 VFMGMGEPLANYKRVVAAVRRITSPAPDGLGLSQRSVTVSTVGLAPAIRKLADEGLSVTL 237 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH ++LR+ LVP+N ++ + ++ A R+Y + R++ EY M+K +ND P A Sbjct: 238 AVSLHTPDDELRDTLVPVNNRWSVSEVLQAARYYADKTGR-RVSIEYAMIKNVNDQPWRA 296 Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L K LK G +NLIP NP PG E+ S + F + G S +R RG Sbjct: 297 DMLGKKLKKALGGLVHVNLIPLNPTPGSEWDASPKDVEREFVRRVIAQGVSCTVRDTRGQ 356 Query: 357 DILAACGQLKSLS 369 +I AACGQL + + Sbjct: 357 EIAAACGQLAAEN 369 >gi|331698480|ref|YP_004334719.1| ribosomal RNA large subunit methyltransferase N [Pseudonocardia dioxanivorans CB1190] gi|326953169|gb|AEA26866.1| Ribosomal RNA large subunit methyltransferase N [Pseudonocardia dioxanivorans CB1190] Length = 368 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 118/374 (31%), Positives = 182/374 (48%), Gaps = 27/374 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 L L + + + A+ +G+P R Q+ + + R D M+D+ R Sbjct: 15 LPPRHLADLDPADRKAAVADLGLPG----FRADQLARHYFGRLTADVDEMTDLPAAARET 70 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L + + ++ TRK L R + E+V + R T+C+SSQ G Sbjct: 71 LASLLPPLVTPVTEQSCDEGATRKMLWRGHDGALA-----ESVLMAYPDRATVCISSQAG 125 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG L RNL+ EI+ QV A + D E + ++SNIV Sbjct: 126 CGMACPFCATGQGGLQRNLSTGEIVDQVRQAAAAARDGALGEPM----------RLSNIV 175 Query: 184 MMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240 MGMGEPL N+ V +L + GL S R IT+ST G V I ++ E + V LA Sbjct: 176 FMGMGEPLANYKRVVAALRRITSPAPDGLGISPRGITVSTVGLVQAIDKLAAEGLPVTLA 235 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLH ++LR+ LVP+N ++ + ++DA R Y + R++ EY +++ +ND P A Sbjct: 236 VSLHTPDDELRDTLVPVNNRWKVGEVLDAARRYAQATGR-RVSIEYALIRDVNDQPWRAD 294 Query: 301 NLIKILKGI----PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L K+L+ +NLIP NP PG E+ S + F ++ +G + +R RG Sbjct: 295 LLGKLLRQRVGTKRVHVNLIPLNPTPGSEWDASPRPVQDEFVRRVQAAGVACTVRDTRGQ 354 Query: 357 DILAACGQLKSLSK 370 +I AACGQL + + Sbjct: 355 EIDAACGQLAATHR 368 >gi|260654398|ref|ZP_05859888.1| radical SAM enzyme, Cfr family [Jonquetella anthropi E3_33 E1] gi|260631031|gb|EEX49225.1| radical SAM enzyme, Cfr family [Jonquetella anthropi E3_33 E1] Length = 352 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 119/371 (32%), Positives = 196/371 (52%), Gaps = 28/371 (7%) Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69 + + +E L I + QI +WIY + + D+ GM+++S+++R L + S Sbjct: 8 LELSYDE---WLTLIQEQFGAKKFVADQICQWIYQKKVFDWNGMTNLSKDLRAALAERVS 64 Query: 70 IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129 I+ P +V+ +IS DGT+K+L +E+V + + T C+SSQVGC L C+ Sbjct: 65 IVPPVLVERQISADGTKKYLWELSD-----GARVESVLMDHGNHLTACLSSQVGCPLKCA 119 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 FC TG RN+TA EI+ L +G+ I N+V MGMGE Sbjct: 120 FCATGRGGFERNMTAGEIVGHFLAME-----------------ADLGKPIGNVVFMGMGE 162 Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248 PL NF NV++++ + R +T+ST+G I ++ + +GV L +SLHA ++ Sbjct: 163 PLLNFVNVERAIRCLLEPKMRGMGVRHVTISTAGVADGIRKLADSGLGVYLCLSLHAPND 222 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 +LR+ L+PIN +YPL ++DA +++ G + R+T EYV++KG+ D P A L + Sbjct: 223 ELRSRLMPINERYPLPQVLDALKYWQGKT-GVRLTVEYVLIKGVTDLPELAYELPTLFSD 281 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 + +NLIP+NP + I F++ ++ G +R +G DI AACGQL++ Sbjct: 282 LQTYVNLIPYNPVIPS-FSRPSASRIEPFAKILRELGMEVEVRREKGTDIDAACGQLRAK 340 Query: 369 SKRIPKVPRQE 379 R + ++ Sbjct: 341 KDRPGERETRK 351 >gi|319901401|ref|YP_004161129.1| 23S rRNA m(2)A-2503 methyltransferase [Bacteroides helcogenes P 36-108] gi|319416432|gb|ADV43543.1| 23S rRNA m(2)A-2503 methyltransferase [Bacteroides helcogenes P 36-108] Length = 346 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 131/373 (35%), Positives = 194/373 (52%), Gaps = 29/373 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K+ L+G+ EL+ + +G+P QI W+Y + + MS++S R L Sbjct: 1 MQKQPLLGLTLSELQNVVKNLGMPG----FAAKQIASWLYDKKVLSIDEMSNLSLRHREL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L + + + VD S DGT K+L R G +E VYIP+ R TLCVSSQVG Sbjct: 57 LKELYEVGAEIPVDAMRSVDGTVKYLYR-----AGEGHFVEAVYIPDDDRATLCVSSQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG Q NLTA +I+ Q+ K++N+V Sbjct: 112 CKMNCKFCMTGKQGFTANLTANQIINQI-------------------SSLPERDKLTNVV 152 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N D V K+L + + S G S+S +RITLS+ G + R EE LAISL Sbjct: 153 MMGMGEPLDNLDEVLKALEVMTASYGYSWSPKRITLSSVGLRKGLQRFIEESDCHLAISL 212 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H R L+P + + + +++ R+Y S RR++FEY++ KG+NDS A L+ Sbjct: 213 HTPVPLQRRELMPAEKAFSITEIVELLRNY-DFSKQRRLSFEYIVFKGVNDSLLYAKELL 271 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+L+G+ +INLI F+ P + +D + + + + G + IR+ RG DI AACG Sbjct: 272 KLLRGLDCRINLIRFHAIPEVDLEGADMETMTALRDYLTAHGLFTTIRSSRGEDIFAACG 331 Query: 364 QLKSLSKRIPKVP 376 L + + K Sbjct: 332 MLSTAKQEDDKQE 344 >gi|226366029|ref|YP_002783812.1| ribosomal RNA large subunit methyltransferase N [Rhodococcus opacus B4] gi|254807198|sp|C1B2V0|RLMN_RHOOB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|226244519|dbj|BAH54867.1| putative rRNA methyltransferase [Rhodococcus opacus B4] Length = 369 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 124/374 (33%), Positives = 191/374 (51%), Gaps = 28/374 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + + L + E EA+ ++G+P R Q+ + Y R D + M+D+ VR Sbjct: 16 MPPKHLADLDSTERREAVKELGLPG----FRADQLARQYYARLEADPEKMTDLPAAVREQ 71 Query: 64 LNQHFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 + V + ++CDG TRK L + + +E+V + R TLC+SSQ Sbjct: 72 VGAALFPTLLTAV-KHLACDGGDTRKTLWKANDGTL-----LESVLMRYPDRATLCISSQ 125 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC + C FC TG L RNL+ EI+ QV A + L D + ++SN Sbjct: 126 AGCGMACPFCATGQGGLQRNLSTAEIVDQVRAAAAALRDGD---------VHGGPGRLSN 176 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238 +V MGMGEPL N+ V ++ + GL S+R +T+ST G P I ++ +E + V Sbjct: 177 VVFMGMGEPLANYKRVVAAVRRITSPAPDGLGLSQRSVTVSTVGLAPAIRKLADEDLSVT 236 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLH ++LR+ LVP+N ++ + ++DA R+Y S R++ EY +++ +ND P Sbjct: 237 LAVSLHTPDDELRDTLVPVNNRWSVAEVLDAARYYADKSGR-RVSIEYALIRDVNDQPWR 295 Query: 299 ALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 A L K L+ G +NLIP NP PG E+ S + F + G S +R RG Sbjct: 296 ADMLGKKLRKALGPLVHVNLIPLNPTPGSEWDASPKPVEKEFVRRVLAQGVSCTVRDTRG 355 Query: 356 LDILAACGQLKSLS 369 +I AACGQL + + Sbjct: 356 QEIAAACGQLAAEN 369 >gi|317968945|ref|ZP_07970335.1| ribosomal RNA large subunit methyltransferase N [Synechococcus sp. CB0205] Length = 365 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 123/377 (32%), Positives = 180/377 (47%), Gaps = 42/377 (11%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 + L+GM LE+ + G R Q+ W+Y +G R +S + + R L Sbjct: 10 EARPLLGMGLSALEQWAKQHG----QAAFRGRQLHDWLYAKGARSLDQVSVLPKAFREEL 65 Query: 65 NQHFSI------IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118 + I+ DGT K LL + IETV IP + R T+CV Sbjct: 66 AAQPPAAAFDWMGRSRELHRSIASDGTTKLLLGTHDQL-----SIETVGIPAEGRLTVCV 120 Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 SSQVGC + C FC TG L R+L EI+ QVL R ++ P Sbjct: 121 SSQVGCPMACRFCATGKGGLQRSLAVHEIVDQVLSVREVMDQRP---------------- 164 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE----- 233 S++V MGMGEPL N ++V ++ L ++R+IT+ST G + R+ E Sbjct: 165 -SHVVFMGMGEPLLNVESVLSAIDCLCTD--LGMAQRQITVSTVGVPRTLPRLAELALER 221 Query: 234 --EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291 LA+SLHA LR L+P YP+E L++ CR Y ++ R++FEY++L G Sbjct: 222 LGRAQFTLAVSLHAPDQRLREELIPTAHAYPIEALLEDCRRYVEITGR-RVSFEYILLGG 280 Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351 +ND PR A L ++L+G + +NLIP+NP E+ + + F + + +R Sbjct: 281 LNDQPRHAAALAQLLRGFQSHVNLIPYNPIQEEEFQRPTPQAVEAFRRALMDRHVAVSVR 340 Query: 352 TPRGLDILAACGQLKSL 368 RGLD AACGQL+ Sbjct: 341 ASRGLDADAACGQLRRR 357 >gi|152993941|ref|YP_001359662.1| ribosomal RNA large subunit methyltransferase N [Sulfurovum sp. NBC37-1] gi|205829910|sp|A6QCU6|RLMN_SULNB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|151425802|dbj|BAF73305.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 359 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 129/375 (34%), Positives = 204/375 (54%), Gaps = 42/375 (11%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ + + +EEL E + R+ QI+ WIY + F+ M ++ + +R L+ Sbjct: 5 KKIIQDLTKEELAEKIK--------PAFRSKQIYDWIYHKYAASFEEMKNLPKAMREELD 56 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYI-------------PEKS 112 +++ + V + S DG+RK+L +E V + + Sbjct: 57 AEYTLAPLKTVTVQDSMDGSRKYLFELHD-----GHTVEAVLLLMRDKEYHEDGSVKHQE 111 Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172 R T+C+SSQVGC + C+FC T +RNLTA EI+ Q+ + + Sbjct: 112 RYTVCISSQVGCKVGCAFCLTAKGGFMRNLTAGEIVEQLRMIKKDNDI------------ 159 Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232 + NIV MGMGEPL N + V KS+ I ++ G++ + R T+STSG I ++G Sbjct: 160 --AANRRVNIVFMGMGEPLDNLEAVAKSVKIFAEEEGMAIAPHRQTISTSGLSSKIEKLG 217 Query: 233 E-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291 + E+GV LAISLHAV ++LR L+PIN+ Y +E +I A +++P +++ +R+ FEY+++K Sbjct: 218 KMELGVNLAISLHAVDDELRQQLMPINKAYNIESIITAVKNFP-VNDRKRVMFEYLVIKD 276 Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351 +ND A L+ +L GI AK+NLI FNP+ G E+ + D+ F E + + G IR Sbjct: 277 VNDDISAAKKLLSLLDGIKAKVNLIYFNPYGGTEFKRPSEADMKKFQEYLTKRGLHCTIR 336 Query: 352 TPRGLDILAACGQLK 366 +GLDI AACGQL+ Sbjct: 337 ESKGLDISAACGQLR 351 >gi|260887299|ref|ZP_05898562.1| radical SAM enzyme, Cfr family [Selenomonas sputigena ATCC 35185] gi|330838947|ref|YP_004413527.1| radical SAM enzyme, Cfr family [Selenomonas sputigena ATCC 35185] gi|260862935|gb|EEX77435.1| radical SAM enzyme, Cfr family [Selenomonas sputigena ATCC 35185] gi|329746711|gb|AEC00068.1| radical SAM enzyme, Cfr family [Selenomonas sputigena ATCC 35185] Length = 350 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 120/365 (32%), Positives = 197/365 (53%), Gaps = 26/365 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +++ GM E ++E + R + R Q+ +W+Y + + F M+++ + +R L Sbjct: 2 KNIFGMTLEAMQEDFAAL----RLEKYRARQVAEWLYKKCAKRFSDMTNLPKSLRTELET 57 Query: 67 HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++I P + + DG T K+LL F +E V + + ++C+S+Q GC+ Sbjct: 58 RYTIDTPLLRTRLDAADGRTSKFLLAFSD-----GAAVEAVLMRQPYGNSICISTQAGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + CSFC + L R+LTA E+L +VL + + S G K+ +V+M Sbjct: 113 MGCSFCASTLHGLARDLTAGEMLAEVLFIEEM--------------LKSQGGKVDTMVLM 158 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G GEPL N++NV L + + L+ S R ITLSTSG VP I R+ EE + + L+ISLH Sbjct: 159 GSGEPLMNYENVVNFLRLLHEEYVLNISYRSITLSTSGIVPAIDRLAEEGMPLTLSISLH 218 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++R+ L+PINRKYPL ++ A + Y + R+T+EY++++ +ND R+A L + Sbjct: 219 APREEIRSELMPINRKYPLSDVVAAGKRYAEKTGR-RVTYEYILIRDVNDGEREAQELAE 277 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L G A +NLIP NP + ++ F + R ++ +R G DI AACGQ Sbjct: 278 LLAGQLASVNLIPINPVKERGFERPSEERTAAFCRALTRRHITATVRREMGADIQAACGQ 337 Query: 365 LKSLS 369 L++ Sbjct: 338 LRNRH 342 >gi|91200995|emb|CAJ74052.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 368 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 137/372 (36%), Positives = 199/372 (53%), Gaps = 26/372 (6%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN L+ S+ + E E +G P R QI W+Y +G DF MSDI Sbjct: 1 MNKLQLTSITELDLSESVELCRSLGEPS----YRGKQILSWMYKKGATDFNQMSDIPLPF 56 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 R L + ++ +I S DGT K+L+ P + IE V + + R T CVS+ Sbjct: 57 REKLEEAHNVFQTKIHTINTSQDGTEKFLIHLPDNNL-----IECVLLRDGKRRTACVST 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC++ CSFC +G L RNL EI+ QVL ++ L I+ Sbjct: 112 QVGCAMGCSFCASGVLGLTRNLKTGEIIEQVLHIKNHL---------------PANEHIT 156 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239 NIV MG+GEPL N+D V KSL I + GL+ R IT+ST G + I R+ +E + V L Sbjct: 157 NIVFMGIGEPLANYDKVVKSLRIMNADWGLAIGARNITISTVGLIEGIRRLAKEGLKVNL 216 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 AISLHA +++ RN LVP N K ++ ++ A + Y ++ I+FEY M+ GINDS +DA Sbjct: 217 AISLHASNDNTRNKLVPSNSKTGIKNILGAAQEYFNATHRD-ISFEYTMIDGINDSKQDA 275 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L +ILKG+ +N++P NP + QK + TF +K G + +R +G+++ Sbjct: 276 KLLAQILKGVQCNVNILPVNPIKEGNFAPPVQKTVETFCTVLKNHGIVATVRQRKGINVN 335 Query: 360 AACGQLKSLSKR 371 AACGQL+ ++ Sbjct: 336 AACGQLRLQIQK 347 >gi|325860042|ref|ZP_08173169.1| 23S rRNA m2A2503 methyltransferase [Prevotella denticola CRIS 18C-A] gi|325482568|gb|EGC85574.1| 23S rRNA m2A2503 methyltransferase [Prevotella denticola CRIS 18C-A] Length = 353 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 127/366 (34%), Positives = 190/366 (51%), Gaps = 29/366 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ L+GM EL+E +G+P Q+ KW+Y + ++ M++IS+ R L Sbjct: 5 KKYLLGMTLGELKEVAKSLGMPA----FTGGQMAKWLYTQQVKSIDEMTNISKANREKLA 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++I E D + S DGT K+L +ETVYIPE R TLCVSSQVGC Sbjct: 61 AAYAIGCKEPTDAQYSKDGTVKYLF-----PTDSGKFVETVYIPEDGRATLCVSSQVGCK 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q +L+A +IL QV K++NIV M Sbjct: 116 MNCLFCQTGKQGFEGSLSATDILNQVYSLPERD-------------------KLTNIVFM 156 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 G GEP+ N DNV + I + G +S +RIT+S+ G + R EE +AIS+H+ Sbjct: 157 GQGEPMDNLDNVLRVTEILTAGFGYGWSPKRITVSSVGIKGKLKRFLEESDCHVAISMHS 216 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ R+ L+P R +E ++D +Y S+ RR++FEY++ K +NDS A ++++ Sbjct: 217 PLHEQRSELMPAERGMSIESIVDLLGNY-DFSHQRRLSFEYIVFKDVNDSEAHAKAIVRL 275 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG+ +INLI F+P P D + + F + G + IR RG DI AACG L Sbjct: 276 LKGLDCRINLIRFHPIPNTPLQGVDDQKMEEFRNYLTLHGVFTTIRASRGQDIFAACGLL 335 Query: 366 KSLSKR 371 + ++ Sbjct: 336 STAKEK 341 >gi|288800113|ref|ZP_06405572.1| radical SAM enzyme, Cfr family [Prevotella sp. oral taxon 299 str. F0039] gi|288333361|gb|EFC71840.1| radical SAM enzyme, Cfr family [Prevotella sp. oral taxon 299 str. F0039] Length = 344 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 120/368 (32%), Positives = 193/368 (52%), Gaps = 29/368 (7%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 K++L+GM EL++A+ +G+ + QI KW+Y + + M++IS+ R Sbjct: 2 MTDKQALLGMSLFELKQAVTNLGMAE----FTAKQIAKWLYSQHVSSIDEMTNISKSNRE 57 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L +HF I +D + S DGT K+L + +ETVYIP+K R TLCVSSQV Sbjct: 58 KLKEHFYIGCANFIDAQYSKDGTIKYLFPTQSGKF-----VETVYIPDKDRATLCVSSQV 112 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG Q NLT+ +IL Q+ K++NI Sbjct: 113 GCKMNCLFCQTGKQGFEGNLTSCDILNQIYSLPERD-------------------KLTNI 153 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 V MG GEP+ NFDNV ++ I + G ++S +RIT+S+ G + R E +AIS Sbjct: 154 VFMGQGEPMDNFDNVLRTTQILTSDYGYAWSPKRITVSSVGVKGKLERFLNESDCHVAIS 213 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 +H R ++P + ++ +++ R+Y ++ RR++FEY++ G+ND+ A + Sbjct: 214 MHNPIASERESIMPAEKGMSIDSIVELLRNY-DFAHQRRLSFEYIIFDGLNDTKEHAQYI 272 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + +++G+ + NLI F+ P +++K + F + + G + IR RG DI AAC Sbjct: 273 VDLVRGLECRFNLIRFHQIPNVSLNPTNEKKMELFRDYLTSHGVFTTIRASRGQDIFAAC 332 Query: 363 GQLKSLSK 370 G L + K Sbjct: 333 GLLSTAKK 340 >gi|225850129|ref|YP_002730363.1| ribosomal RNA large subunit methyltransferase N [Persephonella marina EX-H1] gi|225644821|gb|ACO03007.1| radical SAM enzyme, Cfr family [Persephonella marina EX-H1] Length = 353 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 128/371 (34%), Positives = 204/371 (54%), Gaps = 31/371 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 S+ + +LE + G + R QI KWIY + + + M+D+S+EVR+ L + Sbjct: 2 ISIKDLNYNQLERWVKDQGW----KKFRAKQIAKWIYNKKVNSYDEMTDLSKEVRNYLKE 57 Query: 67 HFSIIYPEIVD-EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + E+V E+ S DG+ K+L R +E+V+IPE+ TLCVS+QVGC+ Sbjct: 58 NTKLNVLELVTFERSSQDGSIKFLWRLED-----GHTVESVFIPERGHNTLCVSTQVGCA 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC+T L+RNLT EI+ Q + ++ +G +ISN+V M Sbjct: 113 VGCKFCFTTKDGLIRNLTTAEIVDQYIQSQIFVGP---------------ENRISNVVYM 157 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI---GVMLAIS 242 GMGEPL N++NVK+S+ I +D L S R+IT+S+SG + I ++ ++ V LA+S Sbjct: 158 GMGEPLANYENVKRSVQILTDDRMLGLSNRKITISSSGIIHQIKKMYDDPSFPQVRLAVS 217 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 L+A R ++PI+ LE L+ P + RI EYV++K IND P DA L Sbjct: 218 LNASDQKTRERIMPISETNSLEDLMKTLNRLP-VKTGFRIMLEYVLIKDINDRPEDAHRL 276 Query: 303 IKIL--KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 +++ K+NLIPFNP+PG ++ +++ + F + + + + +R +G DI A Sbjct: 277 ARLIGKNKKRYKVNLIPFNPYPGSDFERPEKERVDQFHKILWQYNIGAFVRWSKGSDISA 336 Query: 361 ACGQLKSLSKR 371 ACGQL+ + Sbjct: 337 ACGQLRKKEVQ 347 >gi|326333653|ref|ZP_08199890.1| radical SAM enzyme, Cfr family [Nocardioidaceae bacterium Broad-1] gi|325948559|gb|EGD40662.1| radical SAM enzyme, Cfr family [Nocardioidaceae bacterium Broad-1] Length = 395 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 120/371 (32%), Positives = 186/371 (50%), Gaps = 27/371 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + ++A + G+P R Q+ + R + D M+D+ R L Sbjct: 42 RHLADLDLAGRQDAAKEAGLPG----FRAKQLSVHYFERLVDDPAKMTDLPASQREELVN 97 Query: 67 HFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + ++ + GT RK L + + +E+V + R T+C+SSQ GC Sbjct: 98 TFLPDLMTPIRQQEADKGTTRKTLWKLFDGAL-----VESVLMRYTDRATVCISSQAGCG 152 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG L RN++ EI+ QV++A + IP ++SN+V M Sbjct: 153 MACPFCATGQGGLERNMSTAEIVHQVVVAARQMA---------SGEIPGGPGRLSNVVFM 203 Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 GMGEP+ N+ + ++ + GL S R +T+ST G VP I ++ EE I V LA+S Sbjct: 204 GMGEPMANYKALMGAVRRLTSPAPEGLGLSARHVTVSTVGLVPRIKQLTEEGIPVTLALS 263 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA ++LRN LVPIN ++ + ++A +Y ++ R++ EY M++GIND A L Sbjct: 264 LHAPDDELRNELVPINTRFSVAETVEAAWNYARVTKR-RVSIEYAMMRGINDQAWRADLL 322 Query: 303 IKILKGIP----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 +L G +NLIP NP PG ++ SD D F ++ G S+ +R RG +I Sbjct: 323 ADVLNGYGDWGWVHVNLIPLNPTPGSKWTASDPADEREFVRRLEAKGISTTVRDTRGREI 382 Query: 359 LAACGQLKSLS 369 ACGQL + S Sbjct: 383 DGACGQLAAQS 393 >gi|270284175|ref|ZP_05965684.2| radical SAM enzyme, Cfr family [Bifidobacterium gallicum DSM 20093] gi|270277254|gb|EFA23108.1| radical SAM enzyme, Cfr family [Bifidobacterium gallicum DSM 20093] Length = 369 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 125/374 (33%), Positives = 188/374 (50%), Gaps = 28/374 (7%) Query: 6 KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 K L + EE ++G+P + R +Q+ K Y + +D R Sbjct: 11 KPPLHFADLTNEERIAKAKELGLP----KFRVNQLAKHYYDHFDVNAADFTDFPAAHRGQ 66 Query: 64 LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 Q F V +++ DG T K L IE+V + +R TLC+SSQV Sbjct: 67 AAQTFFPQLITEVMRQVADDGQTIKTLWDLFD-----GSRIESVLMRYPNRATLCISSQV 121 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RN++ EIL QV +A ++ + + ++SNI Sbjct: 122 GCGMGCPFCATGQLGLTRNMSTGEILEQVRVAARMMRE---------GEVAGGPGRLSNI 172 Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239 V MGMGEP+ N+ +V ++ S G S R IT+ST G VP I ++ +E + V L Sbjct: 173 VFMGMGEPMGNYKSVMSAVRQISAMPPDGFGISARNITVSTVGVVPGIRKLAQEGLPVRL 232 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA S++LR+ LVP+N+++ + ++DA Y SN R++ EY +++GIND A Sbjct: 233 AVSLHAPSDELRDKLVPMNKRFNTKQVLDAAHDYYLASNR-RVSIEYALMRGINDQAEHA 291 Query: 300 LNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L K L A +N IP NP G ++ S +D F + + R+G ++ +R RG Sbjct: 292 RLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQQFLDILHRAGITATMRDTRGQ 351 Query: 357 DILAACGQLKSLSK 370 DI ACGQL + K Sbjct: 352 DIDGACGQLAAKVK 365 >gi|167750827|ref|ZP_02422954.1| hypothetical protein EUBSIR_01810 [Eubacterium siraeum DSM 15702] gi|167656262|gb|EDS00392.1| hypothetical protein EUBSIR_01810 [Eubacterium siraeum DSM 15702] gi|291530596|emb|CBK96181.1| 23S rRNA m(2)A-2503 methyltransferase [Eubacterium siraeum 70/3] Length = 338 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 120/369 (32%), Positives = 206/369 (55%), Gaps = 33/369 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K ++ + +EELEE +L +G + R QI+ W+++ + +F M+++S ++R Sbjct: 1 MEKTDILSLSKEELEEKILAMG----EKKFRAGQIYDWLHINKVEEFSKMTNLSAQLREK 56 Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L+ F I +I +S D T K+L ++ETV + K ++C+S+QV Sbjct: 57 LDDIFWINSLKIQKRLVSDIDNTVKYLYGLSD-----GEKVETVLMEYKHGNSICISTQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC + VRNL E+LLQ+ + GRKI+++ Sbjct: 112 GCKMGCKFCASTKAGFVRNLEPSEMLLQIYESER-----------------DSGRKINHV 154 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241 V+MG+GEPL NFDNV K L + S S R +++ST G V I + + ++G+ L++ Sbjct: 155 VLMGIGEPLDNFDNVVKFLRLLSAKD--DMSLRHVSVSTCGLVNRIYELADLKLGITLSV 212 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA +N+LR+ ++PIN ++ +E L++AC++Y + RRI++E+ ++ G+ND+ + A Sbjct: 213 SLHAPTNELRSSIMPINDRFRIEELMEACKYYFN-TTGRRISYEFALIDGVNDNRQSADA 271 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L+K+LKG +NLIP N + S + + + + G ++ +R G DI AA Sbjct: 272 LLKLLKGQNCHVNLIPVNEIKEGVFKRS--ASVEKYKQMLIDGGLNATVRRTLGADISAA 329 Query: 362 CGQLKSLSK 370 CGQL+ +K Sbjct: 330 CGQLRRDNK 338 >gi|157415935|ref|YP_001483191.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni 81116] gi|205829693|sp|A8FP27|RLMN_CAMJ8 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|157386899|gb|ABV53214.1| hypothetical protein C8J_1617 [Campylobacter jejuni subsp. jejuni 81116] gi|307748573|gb|ADN91843.1| Ribosomal RNA large subunit methyltransferase N [Campylobacter jejuni subsp. jejuni M1] gi|315931319|gb|EFV10288.1| radical SAM superfamily protein [Campylobacter jejuni subsp. jejuni 327] Length = 356 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 139/378 (36%), Positives = 202/378 (53%), Gaps = 42/378 (11%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +++ + EEL E + + R QI++WIY + +F MS + + +R L Q Sbjct: 5 VNILDFLPEELGEKIKPM--------FRVKQIYQWIYQKYANNFSDMSSLPKYLRLELAQ 56 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------------R 113 +F + V + S DG+ K+L + +E+V +P K R Sbjct: 57 NFHFSPVKCVKNEQSKDGSIKYLFELVD-----GLRVESVLLPMKEEKIDAEGKRISHAR 111 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 T+CVSSQVGC CSFC T L RNL+A EI+ Q+L + Sbjct: 112 YTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNI------------- 158 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233 + NIV MGMGEPL N NV K++ I + + GL+ S RR T+STSG I +G+ Sbjct: 159 -PYERRVNIVYMGMGEPLDNLKNVSKAVKILAQNDGLAISPRRQTISTSGLAKQIKELGQ 217 Query: 234 E-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 +GV+LAISLHAV++ LR L+PIN+ Y + ++DA R +P + +R+ FEY+++ GI Sbjct: 218 MNLGVLLAISLHAVNDGLRTELMPINKAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGI 276 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 ND A L+K+L GI AK+NLI FNP G Y ++ + F + + G + IR Sbjct: 277 NDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSSKGVTCTIRE 336 Query: 353 PRGLDILAACGQLKSLSK 370 +GLDI AACGQLK +K Sbjct: 337 SKGLDISAACGQLKERAK 354 >gi|303237669|ref|ZP_07324229.1| 23S rRNA m2A2503 methyltransferase [Prevotella disiens FB035-09AN] gi|302482121|gb|EFL45156.1| 23S rRNA m2A2503 methyltransferase [Prevotella disiens FB035-09AN] Length = 346 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 121/369 (32%), Positives = 191/369 (51%), Gaps = 29/369 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ L+GM EL+ ++G+P Q+ KW+Y + + M++IS++ R L Sbjct: 5 KKPLVGMNLLELKNVAKELGMPA----FTGGQMAKWLYTQHVTSIDEMTNISKDNREKLK 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++++I + +D + S DGT K+L +E+VYIP+++R TLCVSSQVGC Sbjct: 61 ENYTIGCKKHIDAQYSKDGTIKYLF-----PTDNGKFVESVYIPDENRATLCVSSQVGCK 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q NLT +IL Q+ K++NIV M Sbjct: 116 MNCLFCQTGKQGFEGNLTTADILNQIYSL-------------------PEREKLTNIVFM 156 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 G GEP+ N+DNV K+ + + ++S +RIT+S+ G + R EE +AIS+H Sbjct: 157 GQGEPMDNYDNVLKTTQLLTADYAYAWSPKRITVSSIGIKSKLKRFLEESDCHVAISMHN 216 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + R ++P + + +++ R+Y S+ RR++FEY++ KG NDS A +IK+ Sbjct: 217 PIPEERIEVMPSEKAMSITEIVEMLRNY-DFSHQRRLSFEYIVFKGKNDSVDHAKAIIKL 275 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 ++G+ + NLI F+ P D K + F + G + IR RG DI AACG L Sbjct: 276 VEGLECRFNLIRFHTIPNVPLQGVDDKKMEEFRNYLTAHGVFTTIRASRGQDIFAACGLL 335 Query: 366 KSLSKRIPK 374 + K K Sbjct: 336 STAKKNANK 344 >gi|212715800|ref|ZP_03323928.1| hypothetical protein BIFCAT_00701 [Bifidobacterium catenulatum DSM 16992] gi|212661167|gb|EEB21742.1| hypothetical protein BIFCAT_00701 [Bifidobacterium catenulatum DSM 16992] Length = 406 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 124/374 (33%), Positives = 187/374 (50%), Gaps = 28/374 (7%) Query: 6 KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 K L M EE +G+P + R Q+ Y + + SD R Sbjct: 51 KPPLHFADMTEEERITKAKDLGLP----KFRVKQLANHYYGHFDVNAEEFSDFPAAKRVE 106 Query: 64 LNQHFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + F V +++ +GT K L R + IE+V + +R TLC+SSQV Sbjct: 107 AAEIFFPTLITEVTRQVADEGTTIKTLWRLFDGSL-----IESVLMRYPTRTTLCISSQV 161 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RN++A EI+ QV +A + D + ++SNI Sbjct: 162 GCGMGCPFCATGQLGLTRNMSAGEIVEQVRVAAKAMRD---------GEVAGGPGRLSNI 212 Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239 V MGMGEP+ N+ +V ++ S G S R IT+ST G VP I ++ E I V L Sbjct: 213 VFMGMGEPMGNYKSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLMAEGIPVRL 272 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA +++LR+ LVP+N+++ ++DA Y L++ RR++ EY +++GIND A Sbjct: 273 AVSLHAPNDELRDELVPMNKRFNTTQVLDAAHDYY-LASKRRVSIEYALMRGINDQAEHA 331 Query: 300 LNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L K L A +N IP NP G + S +D F + + ++G ++ +R RG Sbjct: 332 KLLAKRLNHYGDNWAHVNPIPLNPIEGSRWTASKPEDEQQFLDILHKAGITATLRDTRGQ 391 Query: 357 DILAACGQLKSLSK 370 DI ACGQL + + Sbjct: 392 DIDGACGQLAAKER 405 >gi|115438803|ref|NP_001043681.1| Os01g0640800 [Oryza sativa Japonica Group] gi|113533212|dbj|BAF05595.1| Os01g0640800 [Oryza sativa Japonica Group] gi|218188735|gb|EEC71162.1| hypothetical protein OsI_03021 [Oryza sativa Indica Group] gi|222618932|gb|EEE55064.1| hypothetical protein OsJ_02780 [Oryza sativa Japonica Group] Length = 405 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 139/363 (38%), Positives = 199/363 (54%), Gaps = 26/363 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGI--RDFQGMSDISQEVRHL 63 + L GM ELE + G M +WK +Y + + ++ ++++ R + Sbjct: 45 RVMLKGMDYPELENWVRSQGFRPGQAMM----LWKCLYGNNVWAHCYDELAGLNKDFRKM 100 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQV 122 L H + + D + DGTRK L + IETV IP R T+CVSSQV Sbjct: 101 LTDHADLKALTVKDILNASDGTRKILFSLEDGSV-----IETVVIPCTSGRTTVCVSSQV 155 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC++ C FC+TG L ++L+ EI+ Q + AR L D G I+N+ Sbjct: 156 GCAMNCQFCFTGRMGLRKHLSTAEIVEQAVFARRLFSDEFGS--------------ITNV 201 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 V MGMGEPL N DNV K+ +I D GL FS R++T+STSG VP I R +E LA+S Sbjct: 202 VFMGMGEPLHNIDNVLKASAIMVDEQGLQFSPRKVTVSTSGLVPQIKRFLQESNCALAVS 261 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 L+A ++++RN ++PINRKY L +L+ R L ++ FEYVML G+NDS DA L Sbjct: 262 LNATTDEVRNWIMPINRKYNLSLLLGTLREEIRLKKKYKVFFEYVMLAGVNDSVDDAKRL 321 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + +++GIP KINLI FNP G ++ + + I+ F + + G +R RG D +AAC Sbjct: 322 VDLVRGIPCKINLISFNPHSGSQFKPTPDEKIIEFRNILIQDGLVVFVRLSRGDDQMAAC 381 Query: 363 GQL 365 GQL Sbjct: 382 GQL 384 >gi|167630204|ref|YP_001680703.1| radical sam enzyme, cfr family, putative [Heliobacterium modesticaldum Ice1] gi|205829773|sp|B0TGT1|RLMN_HELMI RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|167592944|gb|ABZ84692.1| radical sam enzyme, cfr family, putative [Heliobacterium modesticaldum Ice1] Length = 385 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 130/372 (34%), Positives = 197/372 (52%), Gaps = 28/372 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 + L G+ EE+ L G P R QI+KW+ R +R+ M+D+ Q +R L Sbjct: 31 QPTDLRGLFPEEIAALLTPWGQPT----FRGKQIFKWLQNRAVREVAEMTDLPQALRVRL 86 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-----SRGTLCVS 119 + + +++ DGT K+L R + IE+V +P + R T+C+S Sbjct: 87 GEAGWLKPLAPERHRVARDGTEKYLWRLADGEL-----IESVLMPYRRAQTRDRVTVCLS 141 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 +Q GC L+C FC TG Q RNLTA EI+ QVL + K+ Sbjct: 142 TQAGCPLSCRFCATGRQGFRRNLTAAEIVGQVL------------DITHEKRKDDPDFKV 189 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238 +N+V MGMGEP N+DNV++++ + + G + +RRIT+ST+G VP I R +E V Sbjct: 190 TNLVFMGMGEPFLNYDNVRRAIGLFTHPEGQAIGQRRITVSTAGIVPGIDRFADEDWEVN 249 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLHA + R+ +P+N ++PL +++ACR Y + RR++ EY ++ G+ND D Sbjct: 250 LALSLHAADDKQRSEWMPVNDRFPLAQVLEACRRYWEKT-RRRLSVEYALMAGVNDRLED 308 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L + KG P +NLIP N G +++ F ++R G + IR RG DI Sbjct: 309 ARRLASLFKGWPIHLNLIPVNAVAGIGVRRPEREPTERFLAELRRWGVDAVIREERGQDI 368 Query: 359 LAACGQLKSLSK 370 AACGQL+ +K Sbjct: 369 EAACGQLRGAAK 380 >gi|304382166|ref|ZP_07364677.1| cfr family radical SAM enzyme [Prevotella marshii DSM 16973] gi|304336764|gb|EFM02989.1| cfr family radical SAM enzyme [Prevotella marshii DSM 16973] Length = 346 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 125/369 (33%), Positives = 191/369 (51%), Gaps = 29/369 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K+ L+GM + L E + +G+P Q+ KW+Y R + M+DIS+ R L Sbjct: 4 EKKPLLGMTQVALTETAVALGMPA----FTGRQMAKWLYSRHVSSIAEMTDISKAHRERL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 H+ I VD + S DGT K+L IETVYIP+K R TLCVS QVGC Sbjct: 60 GMHYCIGNHAPVDCQRSVDGTVKYLFPTLD-----GRCIETVYIPDKERATLCVSCQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG Q NLT +IL Q+ ++NIV Sbjct: 115 KMNCLFCQTGKQGFEGNLTVCDILNQIYSL-------------------PERETLTNIVF 155 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MG GEP+ N DNV ++ I + G ++S +RIT+S+ G + R +E +A+S+H Sbjct: 156 MGQGEPMDNLDNVLQATEILTAPYGYAWSPKRITVSSVGVRGRLKRFLDESECHVAVSMH 215 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 + + R L+P R + + D R Y S+ RR++FEY++ G+ND+P A +I+ Sbjct: 216 SPFPEQRAQLMPAERSMSITEIADLLRQY-DFSHQRRLSFEYIVFGGLNDTPAHAKAIIR 274 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L+G+ ++NLI F+P P ++++ + F + + R G + IR RG DI AACG Sbjct: 275 LLQGLDCRVNLITFHPIPNISLHGANRETMERFRDELTRHGVFTTIRASRGQDIFAACGL 334 Query: 365 LKSLSKRIP 373 L + ++ Sbjct: 335 LSTAKQKAD 343 >gi|302554450|ref|ZP_07306792.1| ribosomal RNA large subunit methyltransferase N [Streptomyces viridochromogenes DSM 40736] gi|302472068|gb|EFL35161.1| ribosomal RNA large subunit methyltransferase N [Streptomyces viridochromogenes DSM 40736] Length = 368 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 125/369 (33%), Positives = 183/369 (49%), Gaps = 25/369 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + E +EA+ +G R Q+ + + R D + +DI R L + Sbjct: 20 RHLADLTPAERKEAVAAVG----EKPFRAKQLSQHYFARYAHDPEQWTDIPAGARGRLQE 75 Query: 67 HFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +V +S D TRK L R + +E+V + R T+C+SSQ GC Sbjct: 76 ALLPELMTVV-RHLSTDQGTTRKTLWRLFDGTL-----VESVLMRYPDRVTMCISSQAGC 129 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EI+ Q++ G + +P ++SNIV Sbjct: 130 GMNCPFCATGQAGLDRNLSTAEIVHQIV---------DGMRALRDGEVPGGPARLSNIVF 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 MGMGEPL N++ V S+ +D G+ S+R IT+ST G VP I R +E LAI Sbjct: 181 MGMGEPLANYNRVIGSIRRLTDPEPDGVGLSQRGITVSTVGLVPAIHRFADEGFKCRLAI 240 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++LR+ LVP+N ++ + ++DA Y S R++ EY +++ IND Sbjct: 241 SLHAPDDELRDTLVPVNTRWKVREVLDAGFEYSAKSGR-RLSIEYALIRDINDQAWRGDR 299 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++LKG P +NLIP NP PG ++ S +D F E I G IR RG +I A Sbjct: 300 LGRMLKGRPVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTIRDTRGQEIDGA 359 Query: 362 CGQLKSLSK 370 CGQL + + Sbjct: 360 CGQLAATER 368 >gi|119025804|ref|YP_909649.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium adolescentis ATCC 15703] gi|154487364|ref|ZP_02028771.1| hypothetical protein BIFADO_01214 [Bifidobacterium adolescentis L2-32] gi|205829670|sp|A1A1I4|RLMN_BIFAA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|118765388|dbj|BAF39567.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703] gi|154083882|gb|EDN82927.1| hypothetical protein BIFADO_01214 [Bifidobacterium adolescentis L2-32] Length = 386 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 127/374 (33%), Positives = 189/374 (50%), Gaps = 28/374 (7%) Query: 6 KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 K L M EE ++G+P + R Q+ Y + + SD R Sbjct: 31 KPPLHFADMSEEERIGKAKELGLP----KFRVKQLANHYYGHFDVNAEEFSDFPAARRSD 86 Query: 64 LNQHFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + F V +++ GT K L R + IE+V + +R TLC+SSQV Sbjct: 87 AAEAFFPELIHEVTRQVADGGTTIKTLWRLFDGSL-----IESVLMRYPTRTTLCISSQV 141 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RN++A EI+ QV +A + D + ++SNI Sbjct: 142 GCGMGCPFCATGQLGLTRNMSAGEIVEQVRVAAKAMRD---------GEVAGGSGRLSNI 192 Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239 V MGMGEP+ N+ +V ++ S G S R IT+ST G VP I ++ EE I V L Sbjct: 193 VFMGMGEPMGNYKSVLSAVRQISSMPPEGFGISARNITVSTVGVVPGIRKLAEEGIPVRL 252 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA S++LR+ LVP+N+++ + ++DA Y L++ RR++ EY +++GIND A Sbjct: 253 AVSLHAPSDELRDELVPMNKRFNTKQVLDAAHDYY-LASKRRVSIEYALMRGINDQAEHA 311 Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L K L A +N IP NP G ++ S +D F E + +G ++ +R RG Sbjct: 312 KLLAKRLNHYGDDWAHVNPIPLNPIEGSKWTASKPEDERRFLEILHNAGITATLRDTRGQ 371 Query: 357 DILAACGQLKSLSK 370 DI ACGQL + + Sbjct: 372 DIDGACGQLAAKER 385 >gi|237715676|ref|ZP_04546157.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262408684|ref|ZP_06085230.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294807293|ref|ZP_06766107.1| radical SAM enzyme, Cfr family [Bacteroides xylanisolvens SD CC 1b] gi|299148689|ref|ZP_07041751.1| radical SAM enzyme, Cfr family [Bacteroides sp. 3_1_23] gi|229444385|gb|EEO50176.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262353549|gb|EEZ02643.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294445591|gb|EFG14244.1| radical SAM enzyme, Cfr family [Bacteroides xylanisolvens SD CC 1b] gi|298513450|gb|EFI37337.1| radical SAM enzyme, Cfr family [Bacteroides sp. 3_1_23] Length = 344 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 130/367 (35%), Positives = 198/367 (53%), Gaps = 29/367 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K L+GM EL+ ++G+P QI W+Y + + M+++S + R L Sbjct: 1 MSKYPLLGMTLVELQSLTKRLGMPG----FAAKQIASWLYEKKVASIDDMTNLSLKHREL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L Q++ + VDE S DGT K+L + +G +E+VYIP+ R TLCVSSQVG Sbjct: 57 LKQNYEVGAEAPVDEMRSVDGTVKYLYK-----VGENHFVESVYIPDDDRATLCVSSQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG Q NLTA +I+ Q+ K++N+V Sbjct: 112 CKMNCKFCMTGKQGYTANLTASQIMNQI-------------------HSLPERDKLTNVV 152 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N D V K+L + + + G ++S +RITLST G + R EE LAISL Sbjct: 153 MMGMGEPLDNLDEVLKALELLTATYGYAWSPKRITLSTVGLRKGLQRFIEENDCHLAISL 212 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ R L+P + + + +++ ++Y S RR++FEY++ KG+NDS A L+ Sbjct: 213 HSPLTVQRAELMPAEKAFSITEMVELLKNY-DFSKQRRLSFEYIVFKGLNDSQVYAKELL 271 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+L+G+ ++NLI F+ PG + +D + F + + G + IR+ RG DI AACG Sbjct: 272 KLLRGLDCRVNLIRFHAIPGVDLEGADMDTMTRFRDYLTSHGLFTTIRSSRGEDIFAACG 331 Query: 364 QLKSLSK 370 L + + Sbjct: 332 MLSTAKQ 338 >gi|205355727|ref|ZP_03222497.1| hypothetical protein Cj8421_1776 [Campylobacter jejuni subsp. jejuni CG8421] gi|205346504|gb|EDZ33137.1| hypothetical protein Cj8421_1776 [Campylobacter jejuni subsp. jejuni CG8421] Length = 335 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 136/352 (38%), Positives = 195/352 (55%), Gaps = 34/352 (9%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R QI++WIY + +F MS++ +++R L Q+F + V + S DG+ K+L Sbjct: 2 FRVKQIYQWIYQKYANNFSDMSNLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFEL 61 Query: 93 PARCIGGPVEIETVYIPEKS-------------RGTLCVSSQVGCSLTCSFCYTGTQKLV 139 + IE+V +P K R T+CVSSQVGC CSFC T L Sbjct: 62 VD-----GLRIESVLLPMKEEKIDAEGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLK 116 Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199 RNL+A EI+ Q+L + + NIV MGMGEPL N NV K Sbjct: 117 RNLSAGEIVGQILWIKKQNNI--------------PYERRVNIVYMGMGEPLDNLKNVSK 162 Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPIN 258 ++ I + + GL+ S RR T+STSG I +G+ +GV+LAISLHAV+++LR L+PIN Sbjct: 163 AVKILAQNEGLAISPRRQTISTSGLAKQIKELGQMNLGVLLAISLHAVNDELRTELMPIN 222 Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318 + Y + ++DA R +P + +R+ FEY+++ GIND A L+K+L GI AK+NLI F Sbjct: 223 KAYNIAAIMDAVREFP-IDQRKRVMFEYLLIDGINDKLEHAKELVKLLNGIKAKVNLILF 281 Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 NP G Y ++ + F + + G + IR +GLDI AACGQLK +K Sbjct: 282 NPHEGSLYKRPSLENAIKFQDLLSNKGVTCTIRESKGLDISAACGQLKERAK 333 >gi|88807336|ref|ZP_01122848.1| hypothetical protein WH7805_12333 [Synechococcus sp. WH 7805] gi|88788550|gb|EAR19705.1| hypothetical protein WH7805_12333 [Synechococcus sp. WH 7805] Length = 351 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 126/379 (33%), Positives = 187/379 (49%), Gaps = 37/379 (9%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 ++ + ++L+G+ ELE + G R Q+ W+Y +G RD Q ++ + + Sbjct: 2 ISTAQSKTLLGLGSSELERWAVTQGQSA----FRGRQLHDWLYAKGARDLQEITVLPKSW 57 Query: 61 RHLLNQ-HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119 R L SI + D K++ D T K LL +ETV IP R T+CVS Sbjct: 58 RASLQDSGVSIGRLKEQDRKVAADATTKLLL-----ATDDGETLETVGIPTDQRLTVCVS 112 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 SQVGC + C FC TG L R+L EI+ QVL R ++ R+ Sbjct: 113 SQVGCPMACRFCATGKGGLQRSLYTHEIVAQVLSVREVM-----------------QRRP 155 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE------ 233 S++V MGMGEPL N + V S+ +D L +RRIT+ST G + ++ E Sbjct: 156 SHVVFMGMGEPLLNIEAVLDSIRCLNDD--LGIGQRRITVSTVGVPRTLPKLAELAMERL 213 Query: 234 -EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 LA+SLHA + LR L+P YP + L+D CRHY ++ R++FEY++L G+ Sbjct: 214 GRAQFTLAVSLHAPNQTLREELIPTAHAYPYDALLDDCRHYLAITGR-RVSFEYILLGGL 272 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 ND A L + G + +NLI +NP E+ + I F ++ G + +R Sbjct: 273 NDHAAHAEELADRVGGFQSHVNLIAYNPIEEEEFQRPTRDRIEGFRRVLEGRGVAVSLRA 332 Query: 353 PRGLDILAACGQLKSLSKR 371 RGLD AACGQL+ ++ Sbjct: 333 SRGLDQDAACGQLRRSRQQ 351 >gi|298384050|ref|ZP_06993611.1| radical SAM enzyme, Cfr family [Bacteroides sp. 1_1_14] gi|298263654|gb|EFI06517.1| radical SAM enzyme, Cfr family [Bacteroides sp. 1_1_14] Length = 345 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 129/368 (35%), Positives = 196/368 (53%), Gaps = 29/368 (7%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 + K L+GM EL+ + ++G+P QI W+Y + + M+++S + R Sbjct: 1 MMSKYPLLGMTLIELQSLVKRLGMPG----FAAKQIASWLYDKKVTSIDEMTNLSLKYRE 56 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 LL Q++ + V+E S DGT K+L +G +E+VYIP+ R TLC+SSQV Sbjct: 57 LLKQNYEVGAEAPVEEMRSVDGTVKYLY-----PVGENHFVESVYIPDDERATLCISSQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG Q NLTA +I+ Q+ K++N+ Sbjct: 112 GCKMNCKFCMTGKQGYSANLTAHQIINQI-------------------HSLPERDKLTNV 152 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL N + V K+L I + S G ++S +RIT+ST G + R EE LAIS Sbjct: 153 VMMGMGEPLDNLEEVLKALDILTGSYGYAWSPKRITVSTVGLRKGLRRFIEESDCHLAIS 212 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LH+ R L+P + + + +++ ++Y S RR++FEY++ KG+NDS A L Sbjct: 213 LHSPVTAQRAELMPAEKAFSITEMVELLKNY-DFSKQRRLSFEYIVFKGLNDSQVYAKEL 271 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +K+L+G+ +INLI F+ PG +D + F + + G + IR RG DI AAC Sbjct: 272 LKLLRGLDCRINLIRFHSIPGVALEGADMDTMTRFRDYLTTHGLFTTIRASRGEDIFAAC 331 Query: 363 GQLKSLSK 370 G L + + Sbjct: 332 GMLSTAKQ 339 >gi|225011596|ref|ZP_03702034.1| radical SAM enzyme, Cfr family [Flavobacteria bacterium MS024-2A] gi|225004099|gb|EEG42071.1| radical SAM enzyme, Cfr family [Flavobacteria bacterium MS024-2A] Length = 358 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 128/364 (35%), Positives = 205/364 (56%), Gaps = 24/364 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ + + +EEL+E + G P + Q+++W++ +G+ DF+ M+++S R+LL+ Sbjct: 14 KKDIRALSKEELQEFFVSQGAPS----FKGGQVYQWLWQKGVHDFELMTNLSLTHRNLLD 69 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 HF I + I ++ S DGT K ++ + +E+V IP +R T CVSSQVGCS Sbjct: 70 AHFEIKHINIDFQQRSTDGTIKNAVKLHDNLV-----VESVLIPTSTRTTACVSSQVGCS 124 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC T K +RNL A+EI QV+ + R +SNIV M Sbjct: 125 LDCTFCATAALKRMRNLNADEIYDQVVAM-------------DQQSKLYHQRPLSNIVFM 171 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 GMGEPL N++NV ++ +D+ L S RRITLSTSG I ++ ++ + LA+SLH Sbjct: 172 GMGEPLMNYNNVLAAIEKITDTEALGMSPRRITLSTSGIPKLIRKMADDKVKFGLAVSLH 231 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 + ++R ++P +K+PL LI++ ++ + + ITFEYV+ +G+ND D L+ Sbjct: 232 SARQEVRERIMPFAKKFPLTELIESLEYWYAYTKKQ-ITFEYVVWEGVNDLKEDIQALVG 290 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 + + IP+K+N+I +NP G +Q I + + ++ S R RG+DI AACGQ Sbjct: 291 LCRRIPSKVNIIQYNPIDGSSMKQGNQTVIDAYIAALTKARISVTYRRSRGVDIDAACGQ 350 Query: 365 LKSL 368 L + Sbjct: 351 LANK 354 >gi|116071168|ref|ZP_01468437.1| hypothetical protein BL107_16020 [Synechococcus sp. BL107] gi|116066573|gb|EAU72330.1| hypothetical protein BL107_16020 [Synechococcus sp. BL107] Length = 348 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 127/379 (33%), Positives = 186/379 (49%), Gaps = 41/379 (10%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN + L+G ELE+ + G H R QI W+Y +G++ ++ + ++ Sbjct: 1 MNNV----LLGRSAAELEDWAIAQG----HKSFRGRQIHDWLYNKGVKSLSEITALPKQW 52 Query: 61 RHLLN-QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119 R L Q F + ++V + ++ D T K LL IETV IP R T+C+S Sbjct: 53 RTELEDQTFRVGRLKLVHQSVAADATTKLLL-----ATDDGETIETVGIPTDQRLTVCIS 107 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 SQVGC + C FC TG L R+L EI+ QVL R + R+ Sbjct: 108 SQVGCPMACRFCATGKSGLQRSLATHEIVDQVLSVREAM-----------------DRRP 150 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE------ 233 S+IV MGMGEPL N V +++ + L +RRIT+ST G + ++ E Sbjct: 151 SHIVFMGMGEPLLNSAAVLETIRCLNTD--LGIGQRRITVSTVGVPKTLPQLAELAMEKL 208 Query: 234 -EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 LA+SLHA + LR L+P YP + L+D CRHY L+ R++FEY++L + Sbjct: 209 GRAQFTLAVSLHAPNQQLREELIPTAHAYPYDDLLDDCRHYLDLTGR-RVSFEYILLGEL 267 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 ND P A L + G + +NLI +NP E+ + I F ++R G + +R Sbjct: 268 NDHPEHAAELADRVGGFQSHVNLIAYNPIEEEEFKRPTTQRIEAFRRVLERRGIAVSLRA 327 Query: 353 PRGLDILAACGQLKSLSKR 371 RGLD AACGQL+ + Sbjct: 328 SRGLDQNAACGQLRRQHLK 346 >gi|294783089|ref|ZP_06748413.1| radical SAM enzyme, Cfr family [Fusobacterium sp. 1_1_41FAA] gi|294479967|gb|EFG27744.1| radical SAM enzyme, Cfr family [Fusobacterium sp. 1_1_41FAA] Length = 358 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 129/380 (33%), Positives = 203/380 (53%), Gaps = 34/380 (8%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN +K +++ + +EEL E L+ +G+ + +++ W++ + IR+F M+++S + Sbjct: 1 MNN-EKVNILNLTQEELTEFLVSLGL----KKFYGKEVFIWLHKKIIRNFDDMTNLSLKD 55 Query: 61 RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS------R 113 R +L ++ I + ++ ++S D T K+L + IETV + + R Sbjct: 56 REILKENAYIPFFNLLKHQVSKLDKTEKFLFELEDKGT-----IETVLLRHRDSKNKEIR 110 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 TLCVSSQVGC + CSFC TG +RNL+ EIL QV + Sbjct: 111 NTLCVSSQVGCPVKCSFCATGQGGYMRNLSVSEILNQVYTVER--------------RLR 156 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VG 232 ++N+V MGMGEPL N DN+ +LSI S+ G++ SKR+IT+STSG V I + + Sbjct: 157 KKDESLNNLVFMGMGEPLLNIDNLSTALSIISNENGINISKRKITISTSGIVSGIEKILL 216 Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 E+I + LA+SLH+ N+ R+ ++PIN+ +PLE L Y + RITFEY+++ Sbjct: 217 EKIPIELAVSLHSAINEKRDQIIPINKNFPLEDLSAVLVEYQKQTKR-RITFEYILIDNF 275 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIR 351 N S DA L + +NLIP+N G E+ K I F +K + +R Sbjct: 276 NISEVDANALADFIHQFDHVVNLIPYNEVEGVEHKRPSMKKIDRFYNYLKNVRKVNVTLR 335 Query: 352 TPRGLDILAACGQLKSLSKR 371 +G DI ACGQL+ +K+ Sbjct: 336 QEKGSDIDGACGQLRQRNKK 355 >gi|302525208|ref|ZP_07277550.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp. AA4] gi|302434103|gb|EFL05919.1| ribosomal RNA large subunit methyltransferase N [Streptomyces sp. AA4] Length = 368 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 123/373 (32%), Positives = 185/373 (49%), Gaps = 28/373 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 L L + E EA++++G R Q+ + R D M+DI R Sbjct: 15 LPPRHLADLTVAERAEAVVELG----EKAFRAKQLSNHYFSRLTVDPAEMTDIPAASREK 70 Query: 64 LNQHFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L V ++ DG TRK L R + +E+V + R TLC+SSQ Sbjct: 71 LVADLMPPLLTEV-RALAADGGATRKTLWRAHDGTL-----LESVLMRYPDRATLCISSQ 124 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC + C FC TG L RNL+ EI+ QV A +++ D +P ++SN Sbjct: 125 AGCGMACPFCATGQGGLDRNLSTAEIVDQVRDAAAVMRD---------GSMPGGPGRLSN 175 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238 IV MGMGEPL N+ V ++ +D GL +R +T+ST G P I ++ +E + V Sbjct: 176 IVFMGMGEPLANYKRVVAAVRRITDPSPAGLGIGQRSVTVSTVGLAPAIRKLADEKMQVR 235 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLH ++LR+ LVP+N ++ ++ ++ A R+Y S R++ EY +++ IND P Sbjct: 236 LAVSLHTPDDELRDTLVPVNNRWSVDEVLSAARYYADTSGR-RVSIEYALIRDINDQPWR 294 Query: 299 ALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 A L K L+ G +N+IP NP PG ++ S + F + G + +R RG Sbjct: 295 AELLAKRLRKHLGQLVHVNVIPLNPTPGSKWDASPKPVEREFVRLVNAGGVACTVRDTRG 354 Query: 356 LDILAACGQLKSL 368 DI AACGQL + Sbjct: 355 QDIAAACGQLAAE 367 >gi|294646654|ref|ZP_06724280.1| radical SAM enzyme, Cfr family [Bacteroides ovatus SD CC 2a] gi|292637993|gb|EFF56385.1| radical SAM enzyme, Cfr family [Bacteroides ovatus SD CC 2a] Length = 382 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 130/367 (35%), Positives = 198/367 (53%), Gaps = 29/367 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K L+GM EL+ ++G+P QI W+Y + + M+++S + R L Sbjct: 39 MSKYPLLGMTLVELQSLTKRLGMPG----FAAKQIASWLYEKKVASIDDMTNLSLKHREL 94 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L Q++ + VDE S DGT K+L + +G +E+VYIP+ R TLCVSSQVG Sbjct: 95 LKQNYEVGAEAPVDEMRSVDGTVKYLYK-----VGENHFVESVYIPDDDRATLCVSSQVG 149 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG Q NLTA +I+ Q+ K++N+V Sbjct: 150 CKMNCKFCMTGKQGYTANLTASQIMNQI-------------------HSLPERDKLTNVV 190 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N D V K+L + + + G ++S +RITLST G + R EE LAISL Sbjct: 191 MMGMGEPLDNLDEVLKALELLTATYGYAWSPKRITLSTVGLRKGLQRFIEENDCHLAISL 250 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ R L+P + + + +++ ++Y S RR++FEY++ KG+NDS A L+ Sbjct: 251 HSPLTVQRAELMPAEKAFSITEMVELLKNY-DFSKQRRLSFEYIVFKGLNDSQVYAKELL 309 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+L+G+ ++NLI F+ PG + +D + F + + G + IR+ RG DI AACG Sbjct: 310 KLLRGLDCRVNLIRFHAIPGVDLEGADMDTMTRFRDYLTSHGLFTTIRSSRGEDIFAACG 369 Query: 364 QLKSLSK 370 L + + Sbjct: 370 MLSTAKQ 376 >gi|78778287|ref|YP_394602.1| hypothetical protein Suden_2093 [Sulfurimonas denitrificans DSM 1251] gi|123727504|sp|Q30NR4|RLMN_SULDN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|78498827|gb|ABB45367.1| conserved hypothetical protein [Sulfurimonas denitrificans DSM 1251] Length = 356 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 131/379 (34%), Positives = 202/379 (53%), Gaps = 42/379 (11%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SL+ +EL+ R QI+ W+Y + F M +I Q+++ L Sbjct: 2 KPSLLDFRLKELQA--------NIKPSFRAKQIYGWLYHNYAQSFDDMKNIPQQLKDELA 53 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS------------- 112 + + + +IV +++S DGT K+L IETV++ K Sbjct: 54 KSYVVNLLKIVKKELSNDGTIKYLFELQD-----GKTIETVWLKMKDEQIDEEGCVTQEA 108 Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172 + T+CVS+QVGC + C+FC T R+LTA EI+ QV+ + Sbjct: 109 KYTICVSTQVGCKVGCAFCLTAKGGFTRDLTAGEIVAQVVALKKDNDH------------ 156 Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232 ++ NIV MGMGEPL N DN+ +++ I + GL S +R T+STSG I R+G Sbjct: 157 --KHNRMINIVYMGMGEPLDNLDNLSRAIEIFKEEDGLCISGKRQTVSTSGLSNKIDRLG 214 Query: 233 E-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291 E ++GV +AISLHAV ++LR L+P+N+ + + +I+A + +P + +R+ FEY+++K Sbjct: 215 EMDLGVHIAISLHAVDDELRTELIPMNKAHNISSIIEAVKRFP-IDTRKRVMFEYLVIKN 273 Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351 ND A L+K+L GI AK+NLI FNP+P Y + D++ F E + G IR Sbjct: 274 KNDDLGSAKKLVKLLSGIKAKVNLIYFNPYPDTPYERPQKSDMIAFQEYLINHGLLCTIR 333 Query: 352 TPRGLDILAACGQLKSLSK 370 +G+DI AACGQLK ++ Sbjct: 334 DSKGIDISAACGQLKEKTQ 352 >gi|159904144|ref|YP_001551488.1| putative Fe-S-cluster redox protein [Prochlorococcus marinus str. MIT 9211] gi|205829806|sp|A9BCH2|RLMN_PROM4 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|159889320|gb|ABX09534.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus str. MIT 9211] Length = 356 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 132/377 (35%), Positives = 190/377 (50%), Gaps = 37/377 (9%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK L+G +LE+ + G P R QI +W+Y +G+R + +S + + R L Sbjct: 9 KKVVLLGQNVAKLEKLAQEYGEPA----FRGRQIHEWLYQKGVRKLEEISVLPKLWRTTL 64 Query: 65 NQH-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + E V ++ DGT K LL R IE V IP SR T CVSSQVG Sbjct: 65 SDQGVCTGRLEEVKRLVANDGTIKLLLETSDR-----ESIEAVGIPTNSRLTTCVSSQVG 119 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 CS+ C FC TG R+L EI+ QVL R + R+ S+IV Sbjct: 120 CSMGCRFCATGKGGFQRSLEVHEIVDQVLSIRE-----------------AFDRRPSHIV 162 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIG 236 MGMGEPL N ++V +S+S ++ L +RRIT+ST G V + ++ E + Sbjct: 163 FMGMGEPLLNIESVLESISCLNND--LGIGQRRITVSTVGVVNTLPQLAELALAKLGRVQ 220 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 LA+SLHA + LR +LVP + YP++ L+ CRHY ++ RI+FEY++L +ND Sbjct: 221 FTLALSLHAPNQHLREMLVPSAKVYPIQDLLSDCRHYLDITGR-RISFEYILLATVNDKV 279 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 A L ++ G + +NLI +NP +Y I F ++ G + +R RGL Sbjct: 280 EHAEELADLISGFQSHVNLIAYNPIDEEDYQRPSLARINRFMTVLQSRGVAVSLRASRGL 339 Query: 357 DILAACGQLKSLSKRIP 373 D AACGQL+ R+ Sbjct: 340 DQDAACGQLRHQHTRLD 356 >gi|237739801|ref|ZP_04570282.1| radical SAM domain-containing protein [Fusobacterium sp. 2_1_31] gi|229423409|gb|EEO38456.1| radical SAM domain-containing protein [Fusobacterium sp. 2_1_31] Length = 358 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 130/380 (34%), Positives = 203/380 (53%), Gaps = 34/380 (8%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN +K +++ + +EEL E L+ +G+ + +++ W++ + IR+F M+++S + Sbjct: 1 MNN-EKVNILNLTQEELTEFLVSLGL----KKFYGKEVFIWLHKKIIRNFDDMTNLSLKD 55 Query: 61 RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS------R 113 R +L ++ I + ++ ++S D T K+L + IETV + + R Sbjct: 56 REILKENAYIPFFNLLKHQVSKLDKTEKFLFELEDKGT-----IETVLLRHRDSKNKEIR 110 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 TLCVSSQVGC + CSFC TG +RNL+ EIL QV + Sbjct: 111 NTLCVSSQVGCPVKCSFCATGQGGYMRNLSVSEILNQVYTVER--------------RLR 156 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VG 232 ++N+V MGMGEPL N DN+ +LSI S+ G++ SKR+IT+STSG V I + + Sbjct: 157 KKDESLNNLVFMGMGEPLLNIDNLSTALSIISNENGINISKRKITISTSGIVSGIEKILL 216 Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 E+I + LA+SLH+ ND R+ ++PIN+ +PLE L Y + RITFEY+++ Sbjct: 217 EKIPIELAVSLHSAINDKRDQIIPINKNFPLEDLSAVLVEYQKQTKR-RITFEYILIDNF 275 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIR 351 N S DA L + +NLIP+N G E+ K I F +K + +R Sbjct: 276 NISEADANALADFIHQFDHVVNLIPYNEVEGVEHKRPSMKKIDRFYNYLKNVRKVNVTLR 335 Query: 352 TPRGLDILAACGQLKSLSKR 371 +G DI ACGQL+ +K+ Sbjct: 336 QEKGSDIDGACGQLRQRNKK 355 >gi|261880280|ref|ZP_06006707.1| cfr family radical SAM enzyme [Prevotella bergensis DSM 17361] gi|270332967|gb|EFA43753.1| cfr family radical SAM enzyme [Prevotella bergensis DSM 17361] Length = 359 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 128/376 (34%), Positives = 194/376 (51%), Gaps = 33/376 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K+ L+GM EL+ +G+P QI W+YV+ +R M++IS+ R Sbjct: 1 MNKKILLGMTPTELKAVAKSLGMPA----FTGDQIANWMYVQHVRSIDEMTNISKTNRAC 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVE---------IETVYIPEKSRG 114 L + + I + +D + S DGT K+L +ETVYIP+ R Sbjct: 57 LAEQYEIGCVDPIDAQHSEDGTIKYLFPVRTTSYKEGEAGNEKTSPKFVETVYIPDGERA 116 Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 TLCVS +VGC + C FC TG Q L+A +IL Q+ Sbjct: 117 TLCVSCEVGCKMNCLFCQTGKQGFQGYLSAADILNQIYSL-------------------P 157 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234 ++NIV MG GEP+ N DNV ++ I + ++S +RIT+ST G + R EE Sbjct: 158 ERESLTNIVFMGQGEPMDNLDNVLRTTEILTAPYAFAWSPKRITVSTIGIKNELKRFIEE 217 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 LA+SLH+ ++ R L+PI R P+E ++D R+Y S+ RR++FEY++ +GIND Sbjct: 218 SDCHLAVSLHSPFHEQRAELMPIERTTPVEEIVDLLRNY-DFSHQRRLSFEYIVFEGIND 276 Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 S A ++++L+G+ ++NLI F+P P +D K + +F + G + IR R Sbjct: 277 SKEHARAIVRLLEGLFCRVNLIRFHPIPHVNLHGADDKQMESFRNYLTTHGIHTTIRASR 336 Query: 355 GLDILAACGQLKSLSK 370 G DILAACG L + K Sbjct: 337 GQDILAACGLLNTSRK 352 >gi|303233443|ref|ZP_07320111.1| 23S rRNA m2A2503 methyltransferase [Atopobium vaginae PB189-T1-4] gi|302480451|gb|EFL43543.1| 23S rRNA m2A2503 methyltransferase [Atopobium vaginae PB189-T1-4] Length = 403 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 121/374 (32%), Positives = 189/374 (50%), Gaps = 27/374 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 + +L + ++L L + +P R QI W++ I F M++IS+ +R L Sbjct: 55 PRTNLRRLSHDDLVYQLKLMHLPA----FRAKQIEDWLWHYNIGSFDDMTNISKALRAQL 110 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F + P +++++S DG+RK+LL + +E V +P + ++CVSSQ GC Sbjct: 111 AKQFYLYAPRAINKQVSQDGSRKYLLLLED-----GISVECVGMPNGDKLSVCVSSQAGC 165 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 ++ C FC TG L RNL A+EI Q L R G +ISNIV+ Sbjct: 166 AMGCVFCATGKAGLRRNLFADEIYQQALFIRDDFD----------------GMRISNIVL 209 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISL 243 MG GEPL N+ ++L + ++ +GL R +TLST G +PNIA+ EE LA+SL Sbjct: 210 MGQGEPLTNYTQALRALRLFNNPLGLGIGARHLTLSTCGIIPNIAKFAQEEEQFTLAVSL 269 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ R+ L+P +K+ L L + + Y + R ++EY ++KG+ND+P + L Sbjct: 270 HSAVQKTRDYLMPGVKKFSLVNLYNMMQTYVQKTKR-RPSYEYALIKGVNDTPEELQALC 328 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +G +NLI N + + +K F + G + IR RG DI AACG Sbjct: 329 DFCRGTLCHVNLIQLNEIDDSPFKPTSEKRAQEFVRALNACGVEATIRVSRGQDIDAACG 388 Query: 364 QLKSLSKRIPKVPR 377 QL+ S + K R Sbjct: 389 QLQQRSCPLNKQKR 402 >gi|15605915|ref|NP_213292.1| hypothetical protein aq_416 [Aquifex aeolicus VF5] gi|81556300|sp|O66732|RLMN_AQUAE RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|2983096|gb|AAC06702.1| hypothetical protein aq_416 [Aquifex aeolicus VF5] Length = 348 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 139/370 (37%), Positives = 211/370 (57%), Gaps = 32/370 (8%) Query: 11 GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70 EEL++ ++G+ R Q+++W+Y + + DF+ M+D+ ++ R LL +HF+ Sbjct: 6 NYTLEELKKRFTELGLEP----YRAKQVFRWVYKKFVTDFEKMTDLGKKHRELLKEHFAF 61 Query: 71 IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130 E +D + D K+L + I +ETV I E+ TLCVSSQ+GC++ C+F Sbjct: 62 HPLEKLDRVEAPDA-VKYLFKTKDGHI-----LETVLIKERDHYTLCVSSQIGCAVGCTF 115 Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 C T L RNL+ EI+ Q L + LG+ KI N+V MGMGEP Sbjct: 116 CATALDGLKRNLSTAEIIDQYLQVQQDLGE----------------EKIRNVVFMGMGEP 159 Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI---GVMLAISLHAVS 247 L N++NV+K++ I GL SKRRIT+STSG V I R+ ++ V LA+SL+AVS Sbjct: 160 LANYENVRKAVEIMVSPEGLDLSKRRITISTSGIVAQIKRMAQDPVMKEVNLAVSLNAVS 219 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL- 306 R L+P+ + LE L++ ++YP L RRIT EYV++KG+NDSP DA L K++ Sbjct: 220 QKKREELMPLTKTNTLEELMEVLKNYP-LPKYRRITLEYVLIKGVNDSPNDAERLAKLIG 278 Query: 307 -KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 K+NLIPFNP P Y DI+ F + + + G S+ +R +G+++ ACGQL Sbjct: 279 RHKKKFKVNLIPFNPDPNLPYERPALTDIMKFQKVLWKYGISNFVRFSKGVEVFGACGQL 338 Query: 366 KSLSKRIPKV 375 ++ ++ +V Sbjct: 339 RTQRLQLQRV 348 >gi|313676931|ref|YP_004054927.1| 23S rRNA m(2)a-2503 methyltransferase [Marivirga tractuosa DSM 4126] gi|312943629|gb|ADR22819.1| 23S rRNA m(2)A-2503 methyltransferase [Marivirga tractuosa DSM 4126] Length = 360 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 127/367 (34%), Positives = 197/367 (53%), Gaps = 24/367 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 L K+ + M + + E L G R QI++W++++ F+ M+++S+ +R Sbjct: 17 LSKKDIRKMSIDAIAEDLTASG----EKAFRAKQIYEWLWMKSAASFEEMTNLSKNLREW 72 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L+Q++ I I D+++S D T K R E+E V IP ++R T CVSSQVG Sbjct: 73 LDQNYCINRITIADKQLSSDRTIKVAFRLHD-----GNEVEGVLIPTENRMTACVSSQVG 127 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 CSL+C FC TG K +RNL A EI QV++ + L +SNIV Sbjct: 128 CSLSCKFCATGYLKRMRNLEAAEIYDQVVMIKEL-------------AETHYDMPLSNIV 174 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242 MGMGEPL N+ N+ +S+ + GL S +RIT+ST+G I ++ ++ LA+S Sbjct: 175 YMGMGEPLLNYKNMMESIEHITSEKGLHMSPKRITVSTAGISKMIKKLADDDAKFNLALS 234 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +++ R+ ++ IN L +L +A +Y + R+TFEY + NDS DA L Sbjct: 235 LHAANDEKRSQIMSINDSNNLPVLREALEYYHSKT-KNRVTFEYCVFNNFNDSLEDAKEL 293 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + K +PAK+NLI +NP ++ +D+ + F+ ++ G +R RG DI AAC Sbjct: 294 WQFTKYVPAKVNLIEYNPIDQADFTNTDEDKLDKFAAFLEDRGVIVNVRRSRGKDIDAAC 353 Query: 363 GQLKSLS 369 GQL + Sbjct: 354 GQLANKH 360 >gi|87125371|ref|ZP_01081217.1| hypothetical protein RS9917_08135 [Synechococcus sp. RS9917] gi|86167140|gb|EAQ68401.1| hypothetical protein RS9917_08135 [Synechococcus sp. RS9917] Length = 350 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 126/369 (34%), Positives = 183/369 (49%), Gaps = 37/369 (10%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-NQH 67 L+G EELE+ + G P R Q+ W+Y +G ++ + + R L Q Sbjct: 10 LLGRSAEELEQWAVAQGQPA----FRGRQLHDWLYAKGAETLAAITVLPKAWRLALEAQG 65 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 I + D +++ D T K LL+ + IETV IP R T+CVSSQVGC + Sbjct: 66 VRIGRLQEQDRRVAADATTKLLLQTDDGEL-----IETVGIPTDQRLTVCVSSQVGCPMA 120 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC TG L R+L EI+ QVL R+++ R+ S++V MGM Sbjct: 121 CRFCATGQGGLQRSLATHEIVDQVLSVRAVM-----------------DRRPSHVVFMGM 163 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIGVMLA 240 GEPL N D V ++ + L +RRIT+ST G + ++ E LA Sbjct: 164 GEPLLNIDAVLGAIRCLHND--LGIGQRRITVSTVGVPRTLPQLAELAMARLGRAQFTLA 221 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA + LR L+P YP + L+ CRHY L+ R++FEY++L G+ND+P A Sbjct: 222 VSLHAPNQALREELIPTAHAYPYDDLLQDCRHYLELTGR-RVSFEYILLGGLNDAPTHAE 280 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L + G + +NLI +NP + + I F ++R G + +R RGLD A Sbjct: 281 ELADRVGGFQSHVNLIAYNPIEEGAFQRPSAERINGFRRVLERRGVAVSLRASRGLDQDA 340 Query: 361 ACGQLKSLS 369 ACGQL+ S Sbjct: 341 ACGQLRRRS 349 >gi|225021120|ref|ZP_03710312.1| hypothetical protein CORMATOL_01132 [Corynebacterium matruchotii ATCC 33806] gi|224946120|gb|EEG27329.1| hypothetical protein CORMATOL_01132 [Corynebacterium matruchotii ATCC 33806] Length = 389 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 118/376 (31%), Positives = 188/376 (50%), Gaps = 31/376 (8%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 + + + ++ AL +G+P + R +Q+ K Y R D + M+D+ VR Sbjct: 35 RAMPPKHFADLTPDQRIAALADLGLP----KFRANQLAKHYYGRLEADPRTMTDLPAAVR 90 Query: 62 HLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 + + V + + DG T K L R + +E+V + +R TLC+SS Sbjct: 91 DAVAEALFPTLMTPVRQVTADDGETHKTLWRLHDGTL-----LESVLMRYPNRATLCISS 145 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC + C FC TG L RNL+ EI+ QV A + + G ++S Sbjct: 146 QAGCGMACPFCATGQAGLDRNLSTGEIIDQVRSAARTM--------------AAEGNRLS 191 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGV 237 NIV MGMGEPL N+ V ++ + G S+R +T+ST G P I ++ +E + V Sbjct: 192 NIVFMGMGEPLANYKRVVSAVRQITAPVPQGFGISQRNVTVSTVGMAPMIRKLADENLSV 251 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 LA+SLH ++LR+ LVP+N ++ + ++DA +Y S R++ EY +++ IND Sbjct: 252 TLAVSLHTPDDELRDTLVPVNNRWSVAEVLDAAAYYADRSGR-RVSIEYALIRDINDQGW 310 Query: 298 DALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 A L K L G A +NLIP NP PG ++ S ++ F + G + +R + Sbjct: 311 RADLLGKKLHKALGSKAHVNLIPLNPTPGSKWDASPREQQAEFVRRVIAQGVTCTVRDTK 370 Query: 355 GLDILAACGQLKSLSK 370 G +I AACGQL + ++ Sbjct: 371 GQEIAAACGQLAAENR 386 >gi|239618306|ref|YP_002941628.1| radical SAM enzyme, Cfr family [Kosmotoga olearia TBF 19.5.1] gi|239507137|gb|ACR80624.1| radical SAM enzyme, Cfr family [Kosmotoga olearia TBF 19.5.1] Length = 343 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 123/369 (33%), Positives = 195/369 (52%), Gaps = 30/369 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+ M +EL + L+ G + R SQI+ WIY + + +F M+++ ++ R L+ F Sbjct: 3 LLEMTLDELRKVLVDEGYE----KYRASQIFDWIYKKKVLNFSNMTNLPKDFRKFLSGTF 58 Query: 69 SIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 IV +S DGT K+L + IE+V + T C+S+QVGC L Sbjct: 59 RYPEMTIVRRSLSKIDGTEKFLWKLHD-----GEFIESVILRHPDHTTFCISTQVGCQLG 113 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC TG RNL+ EI+ QV+ +G + ++NIV MGM Sbjct: 114 CIFCATGMSGFKRNLSVSEIVGQVIFMEKSMG-----------------KNVTNIVFMGM 156 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 GEP N DNV KS+ I + G + R T+ST+G I R+ + + V L++SLHA Sbjct: 157 GEPFLNTDNVFKSIEILHEPAGRNLGIRHFTISTAGIPEGIIRLADSGMDVRLSLSLHAA 216 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 +++ R++L+PIN++Y ++ L+ + +Y +N RIT EY+++ GINDS DA L K+ Sbjct: 217 TDEKRSMLMPINKRYNIQQLMASLEYYQRKTNR-RITIEYILIDGINDSIEDAKQLAKLF 275 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 K + +N+I NP ++ + F+ +K+ G + IRT +G DI AACGQL+ Sbjct: 276 KHLKIFVNIIAINPVVPT-LKRPSREKVERFAIELKKHGIEAAIRTEKGSDIDAACGQLR 334 Query: 367 SLSKRIPKV 375 + + + Sbjct: 335 RKNLQEERA 343 >gi|332886413|gb|EGK06657.1| ribosomal RNA large subunit methyltransferase N [Dysgonomonas mossii DSM 22836] Length = 341 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 123/370 (33%), Positives = 195/370 (52%), Gaps = 29/370 (7%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 M E+ + + G+P R QI W+Y + I M+++S R LL++ + I Sbjct: 1 MTMEDFYGVVGECGLP----RFSAKQIADWVYKKRITSIDEMTNLSVANRALLSEKYDIG 56 Query: 72 YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131 ++ + S DGT K+L + + IE V IPE R TLCVSSQVGC + C FC Sbjct: 57 RYNPLEFQQSVDGTVKYLFKTEKEKL-----IEAVMIPEDDRATLCVSSQVGCKMNCLFC 111 Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191 TG Q NLTA EIL Q+ R ++N+V MGMGEPL Sbjct: 112 MTGKQGFNGNLTANEILNQLYSVRE-------------------AESLTNVVFMGMGEPL 152 Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLR 251 N++ +KK+L I + G+++S +RIT+ST+G P + R +E LAIS+H+ + R Sbjct: 153 DNYEELKKTLEIMTADYGMAWSPKRITVSTTGVTPKLKRFLDESNAHLAISIHSPEKEQR 212 Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311 ++P + +P+ ++D R Y + RR++FEY+M NDS A L ++L+G+ Sbjct: 213 LSIMPAEKAFPITGVMDLLRQY-DWTKQRRLSFEYIMFDNFNDSLIHAKELTQMLRGVEC 271 Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 ++NLI F+ P + S ++ + F + + + G +S IR RG DI AACG L ++ Sbjct: 272 RVNLIRFHAIPNVDLKTSTKEKMEAFRDYLTKKGVTSTIRASRGEDIFAACGMLSTMKGD 331 Query: 372 IPKVPRQEMQ 381 +++++ Sbjct: 332 ALSASKKDLE 341 >gi|218261353|ref|ZP_03476207.1| hypothetical protein PRABACTJOHN_01873 [Parabacteroides johnsonii DSM 18315] gi|218224074|gb|EEC96724.1| hypothetical protein PRABACTJOHN_01873 [Parabacteroides johnsonii DSM 18315] Length = 343 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 127/369 (34%), Positives = 186/369 (50%), Gaps = 29/369 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K L+GM EEL+ + G+P QI W+Y + + M++I+ R LL Sbjct: 3 EKRRLLGMTLEELKGVASEAGLPG----YAAKQIADWLYKKKVTSIAAMTNIAAAKRTLL 58 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F + D S DGT K+L G +E+VYIP + R TLCVSSQVGC Sbjct: 59 EESFEVGAVPPSDLMKSVDGTIKYLY-----PAGPGNFVESVYIPTEDRATLCVSSQVGC 113 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG Q +NL+A EIL Q+ +++NIV Sbjct: 114 KMNCLFCMTGKQGFTKNLSANEILNQI-------------------QSLPETEELTNIVF 154 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N D + K L I + G ++S +RIT+ST G + R EE LA+SLH Sbjct: 155 MGMGEPLDNVDELFKVLEILTAPYGYAWSPKRITVSTIGVAKGLKRFLEESECHLAVSLH 214 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 + R L+P+ + +P +I+ + Y ++ RRI+FEY++ K +ND + A L+ Sbjct: 215 SPYPGERLSLMPVEKAFPARDIIETIKQY-DFTHQRRISFEYIVFKNLNDDLQHAKALVC 273 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L +P ++NLI F+ P SD + F + + +G IR RG DI AACG Sbjct: 274 LLDKVPCRVNLIRFHAIPNVSLESSDLARMEAFRDTLNAAGIVCTIRASRGEDIFAACGM 333 Query: 365 LKSLSKRIP 373 L + K+ Sbjct: 334 LSTAKKQQK 342 >gi|291557812|emb|CBL34929.1| 23S rRNA m(2)A-2503 methyltransferase [Eubacterium siraeum V10Sc8a] Length = 338 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 119/369 (32%), Positives = 205/369 (55%), Gaps = 33/369 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K ++ + +EELEE +L +G + R QI+ W+++ + +F M+++S ++R Sbjct: 1 MEKTDILSLSKEELEEKILAMG----EKKFRAGQIYDWLHINKVEEFSKMTNLSAQLREK 56 Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L+ F I +I +S D T K+L ++ETV + K ++C+S+QV Sbjct: 57 LDDIFWINSLKIQKRLVSDIDNTVKYLYGLSD-----GEKVETVLMEYKHGNSICISTQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC + VRNL E+LLQ+ + GRKI+++ Sbjct: 112 GCKMGCKFCASTKAGFVRNLEPSEMLLQIYESER-----------------DSGRKINHV 154 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241 V+MG+GEPL N DNV K L + S S R +++ST G V I + + ++G+ L++ Sbjct: 155 VLMGIGEPLDNLDNVVKFLRLLSAKD--DMSLRHVSVSTCGLVNRIYELADLKLGITLSV 212 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA +N+LR+ ++PIN ++ +E L++AC++Y + RRI++E+ ++ G+ND+ + A Sbjct: 213 SLHAPTNELRSSIMPINDRFRIEELMEACKYYFN-TTGRRISYEFALIDGVNDNRQSADA 271 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L+K+LKG +NLIP N + S + + + + G ++ +R G DI AA Sbjct: 272 LLKLLKGQNCHVNLIPVNEIKEGVFKRS--ASVEKYKQMLIDGGLNATVRRTLGADISAA 329 Query: 362 CGQLKSLSK 370 CGQL+ +K Sbjct: 330 CGQLRRDNK 338 >gi|326382905|ref|ZP_08204595.1| ribosomal RNA large subunit methyltransferase N [Gordonia neofelifaecis NRRL B-59395] gi|326198495|gb|EGD55679.1| ribosomal RNA large subunit methyltransferase N [Gordonia neofelifaecis NRRL B-59395] Length = 371 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 124/374 (33%), Positives = 186/374 (49%), Gaps = 27/374 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 L + + + +A+ +G+P + R +Q+ K Y R D M+D+ R Sbjct: 18 LPPKHFADLDEQGRIDAVADLGLP----KFRANQLAKQYYGRLNADVDEMTDLPAGKRDA 73 Query: 64 LNQH-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + + F + + D TRK L R + +E+V + R TLC+SSQ Sbjct: 74 VGEKLFPTLMTPVRHISCDDDSTRKTLWRLHDGTL-----LESVLMRYPERNTLCISSQA 128 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RNL+ EI+ QV A L D E ++SNI Sbjct: 129 GCGMACPFCATGQGGLDRNLSTAEIVDQVRAAARALRDGEVGEPG----------RLSNI 178 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239 V MGMGEPL N+ V ++ + G S R +T+ST G P I R+ +E + V L Sbjct: 179 VFMGMGEPLANYKRVVDAVRKITSPSPDGFGISARSVTVSTVGLAPAIRRLADEGLSVTL 238 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH ++LR+ LVP+N ++ + +++A R+Y S RR++ EY +++ +ND P A Sbjct: 239 AVSLHTPDDELRDTLVPVNNRWSVAEVLEAARYYAD-STGRRVSIEYALIRDVNDQPWRA 297 Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L K L+ G +NLIP NP PG E+ S + F ++ G S +R RG Sbjct: 298 DLLGKKLRQALGSLVHVNLIPLNPTPGSEWDASPKPVEAEFVRRVREHGVSCTVRDTRGQ 357 Query: 357 DILAACGQLKSLSK 370 +I AACGQL + K Sbjct: 358 EIAAACGQLAAEEK 371 >gi|330752065|emb|CBL80576.1| radical SAM superfamily protein, UPF0063 [uncultured Flavobacteria bacterium] Length = 349 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 125/367 (34%), Positives = 190/367 (51%), Gaps = 23/367 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK + G+ +E + E R Q+++W++ + F M+++S R LL Sbjct: 4 KKRDIRGLSQEAIIEFFEAH----NEQSFRAKQVYQWLWQKSASSFDEMTNLSISTRALL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 N +F+ E+ + S DGT K ++ +E+V IP + R T CVSSQVGC Sbjct: 60 NANFNFNLLEVDLMQRSKDGTIKNAVKLHDGAF-----VESVLIPTEKRITACVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 SL C+FC T + K +RNL +EI QV++ + ++ GR ++NIV Sbjct: 115 SLDCTFCATASLKRMRNLGLDEIYDQVVVIHNQGKEY-------------FGRPLTNIVF 161 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MGMGEPL N++NV ++ +D GL S RRITLST G I R+ ++ + LAISL Sbjct: 162 MGMGEPLLNYNNVLAAIEKITDPKGLGLSPRRITLSTIGVPKLIKRMADDGVKFNLAISL 221 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ + R L+P+ K + + Y R +TFEYV+ K +ND+ +D L Sbjct: 222 HSAIEEKRAKLMPLAHKSATLVDLRESLQYWYAKTGRGVTFEYVIWKDLNDTEQDVKALA 281 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K IP K+N+I +NP Y + Q+ + + E ++ G + IR RG DI AACG Sbjct: 282 KFCGAIPTKVNIIQYNPIDNGPYTQASQEAVNMYKETLESKGIITTIRHSRGQDIDAACG 341 Query: 364 QLKSLSK 370 QL + + Sbjct: 342 QLANKVE 348 >gi|317125387|ref|YP_004099499.1| 23S rRNA m(2)A-2503 methyltransferase [Intrasporangium calvum DSM 43043] gi|315589475|gb|ADU48772.1| 23S rRNA m(2)A-2503 methyltransferase [Intrasporangium calvum DSM 43043] Length = 393 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 120/370 (32%), Positives = 182/370 (49%), Gaps = 19/370 (5%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + E +E + +G H R Q+ + R + D + M+D+ + VR L + Sbjct: 35 RHLADLTPAERKEVVESLG----HQGFRARQLSTHYFERLVDDPEQMTDLPKAVRADLVR 90 Query: 67 HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + + DG T K+ R I +E+V + +R T+C+SSQ GC Sbjct: 91 DLLPPLLAPIVRRQADDGQTMKYAWRLHDGAI-----VESVLMRYPNRVTICISSQAGCG 145 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG L RN++ EI+ QV+ A L +G + ++SN+V M Sbjct: 146 MNCPFCATGQAGLTRNMSTAEIVEQVVWAARALRTGELAGGQDGDREHPL--RVSNVVFM 203 Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 GMGE L N+ ++ +D GL S R IT+ST G VP I ++ E I V LA+S Sbjct: 204 GMGEALANYGAAIGAIRRLTDPAPDGLGISARGITMSTVGLVPAIDKLAAEGIPVTLALS 263 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA ++LR+ LVPIN ++ ++ IDA Y + RR++ EY +++ IND A L Sbjct: 264 LHAPDDELRDELVPINTRWKVDEAIDAAHRYYE-TTGRRVSIEYALIRDINDQGWRADLL 322 Query: 303 IKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 + L +N IP NP PG ++ S F E ++ G + IR RG DI Sbjct: 323 AQKLNRRGRGWVHVNPIPLNPTPGSKWTASRPGVEQNFVERLRAHGIPTTIRDTRGQDID 382 Query: 360 AACGQLKSLS 369 ACGQL + + Sbjct: 383 GACGQLAAAT 392 >gi|119717461|ref|YP_924426.1| radical SAM protein [Nocardioides sp. JS614] gi|205829791|sp|A1SLQ4|RLMN_NOCSJ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|119538122|gb|ABL82739.1| 23S rRNA m(2)A-2503 methyltransferase [Nocardioides sp. JS614] Length = 376 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 118/371 (31%), Positives = 181/371 (48%), Gaps = 27/371 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + +E ++G+P R Q+ + R + D M+D+ R L Sbjct: 24 RHLADLAPDERTAYAKELGLPG----FRAKQLSTHYFSRLVDDPDQMTDLPAGQRAELVA 79 Query: 67 HFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + GT RK L R + +E+V + R T+CVSSQ GC Sbjct: 80 GLLPGLMTPLRTMEADRGTTRKTLWRLFDGAL-----VESVLMRYPDRATMCVSSQAGCG 134 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG L RN++ EI+ QV+ G + +P ++SN+V M Sbjct: 135 MACPFCATGQGGLQRNMSTAEIVEQVVA---------GARSLARGEVPGGPGRVSNVVFM 185 Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 GMGEPL N+ V ++ +D GL S R +T+ST G VP + ++ +E I V LA+S Sbjct: 186 GMGEPLANYKAVLGAVRRLTDPAPDGLGMSARGVTVSTVGLVPRMRQLADEGIPVTLALS 245 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA ++LRN LVPIN ++ + ++A +Y ++ R++ EY M++GIND A L Sbjct: 246 LHAPDDELRNELVPINTRFSVAETVEAAWNYAKVTKR-RVSIEYAMMRGINDQAWRADLL 304 Query: 303 IKILKGIP----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 +L+G +NLIP NP PG ++ SD D F ++ + +R RG +I Sbjct: 305 GDVLRGYGDWGWVHVNLIPLNPTPGSKWTASDPADEREFVRRLEAKAIPTTVRDTRGREI 364 Query: 359 LAACGQLKSLS 369 ACGQL + Sbjct: 365 DGACGQLAATE 375 >gi|21223996|ref|NP_629775.1| ribosomal RNA large subunit methyltransferase N [Streptomyces coelicolor A3(2)] gi|256784928|ref|ZP_05523359.1| hypothetical protein SlivT_10600 [Streptomyces lividans TK24] gi|289768821|ref|ZP_06528199.1| cfr family radical SAM enzyme [Streptomyces lividans TK24] gi|81556653|sp|O86754|RLMN_STRCO RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|3319741|emb|CAA19907.1| conserved hypothetical protein SC6A9.22c [Streptomyces coelicolor A3(2)] gi|289699020|gb|EFD66449.1| cfr family radical SAM enzyme [Streptomyces lividans TK24] Length = 368 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 126/374 (33%), Positives = 185/374 (49%), Gaps = 27/374 (7%) Query: 4 LKKE--SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 +KK L + E +EA+ IG R Q+ + + R + +DI R Sbjct: 15 VKKPPRHLADLTPAERKEAVAAIG----EKPFRAKQLSQHYFARYAHAPEQWTDIPAGSR 70 Query: 62 HLLNQHFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119 L + +V +S D TRK L + + +E+V + R T+C+S Sbjct: 71 EGLREALLPELMTVV-RHLSTDQGTTRKTLWKLFDGTL-----VESVLMRYPDRVTMCIS 124 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 SQ GC + C FC TG L RNL+ EI+ Q++ G + +P ++ Sbjct: 125 SQAGCGMNCPFCATGQAGLDRNLSTAEIVHQIV---------DGMRALRDGEVPGGPARL 175 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARV-GEEIG 236 SNIV MGMGEPL N++ V ++ +D GL S+R IT+ST G VP I R GE Sbjct: 176 SNIVFMGMGEPLANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAIHRFTGEGFK 235 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 LAISLHA ++LR+ LVP+N ++ + ++DA Y S R++ EY +++ IND Sbjct: 236 CRLAISLHAPDDELRDTLVPVNTRWKVREVLDAGFEYAAKSGR-RLSIEYALIRDINDQA 294 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L ++L+G P +NLIP NP PG ++ S +D F E I G IR RG Sbjct: 295 WRGDRLGRLLRGRPVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTIRDTRGQ 354 Query: 357 DILAACGQLKSLSK 370 +I ACGQL + + Sbjct: 355 EIDGACGQLAASER 368 >gi|305680861|ref|ZP_07403668.1| 23S rRNA m2A2503 methyltransferase [Corynebacterium matruchotii ATCC 14266] gi|305659066|gb|EFM48566.1| 23S rRNA m2A2503 methyltransferase [Corynebacterium matruchotii ATCC 14266] Length = 385 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 118/376 (31%), Positives = 188/376 (50%), Gaps = 31/376 (8%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 + + + ++ AL +G+P + R +Q+ K Y R D + M+D+ VR Sbjct: 31 RAMPPKHFADLTPDQRIAALADLGLP----KFRANQLAKHYYGRLEADPRTMTDLPAAVR 86 Query: 62 HLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 + + V + + DG T K L R + +E+V + +R TLC+SS Sbjct: 87 DAVAEALFPTLMTPVRQVTADDGETHKTLWRLHDGTL-----LESVLMRYPNRATLCISS 141 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC + C FC TG L RNL+ EI+ QV A + + G ++S Sbjct: 142 QAGCGMACPFCATGQAGLDRNLSTGEIIDQVRSAARTM--------------VAEGSRLS 187 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGV 237 NIV MGMGEPL N+ V ++ + G S+R +T+ST G P I ++ +E + V Sbjct: 188 NIVFMGMGEPLANYKRVVSAVRQITAPVPQGFGISQRNVTVSTVGMAPMIRKLADENLSV 247 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 LA+SLH ++LR+ LVP+N ++ + ++DA +Y S R++ EY +++ IND Sbjct: 248 TLAVSLHTPDDELRDTLVPVNNRWSVAEVLDAAAYYADRSGR-RVSIEYALIRDINDQGW 306 Query: 298 DALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 A L K L G A +NLIP NP PG ++ S ++ F + G + +R + Sbjct: 307 RADLLGKKLHKALGSKAHVNLIPLNPTPGSKWDASPREQQAEFVRRVIAQGVTCTVRDTK 366 Query: 355 GLDILAACGQLKSLSK 370 G +I AACGQL + ++ Sbjct: 367 GQEIAAACGQLAAENR 382 >gi|224283162|ref|ZP_03646484.1| hypothetical protein BbifN4_04969 [Bifidobacterium bifidum NCIMB 41171] gi|313140311|ref|ZP_07802504.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] gi|313132821|gb|EFR50438.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] Length = 396 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 124/371 (33%), Positives = 188/371 (50%), Gaps = 26/371 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L+ M +E +G+P + R Q+ + R + + +D+ R + + Sbjct: 40 VHLVDMTPDERVAKAKDLGLP----KFRVKQLANHYFGRLETESEAFTDLPAATRGDIVE 95 Query: 67 HFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + V +++ GT K L R IE+V + +R TLC+SSQVGC Sbjct: 96 AFFPPLIDEVTHQVADQGTTIKTLWRLFD-----GSHIESVLMRYPNRTTLCISSQVGCG 150 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG L RN++ EIL QV +A ++ D + ++SNIV M Sbjct: 151 MGCPFCATGKLGLTRNMSTGEILEQVRVAARMMRD---------GEVAGGPGRLSNIVFM 201 Query: 186 GMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 GMGEP+ N+ +V ++ S G S R IT+ST G VP I ++ E I V LA+S Sbjct: 202 GMGEPMGNYRSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIRKLAAEGIPVRLAVS 261 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA S+ LR+ LVP+N+++ ++DA Y LS+ RR++ EY +++GIND A L Sbjct: 262 LHAPSDALRDELVPMNKRFNTTQVLDAAHDYF-LSSKRRVSIEYALMRGINDQAEHARLL 320 Query: 303 IKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 K L A +N IP NP G + S +D F + + +G ++ +R RG DI Sbjct: 321 AKRLNHYGDDWAHVNPIPLNPIEGSRWTASKPEDEQQFLDILHHAGITATLRDTRGSDID 380 Query: 360 AACGQLKSLSK 370 ACGQL + +K Sbjct: 381 GACGQLAAKTK 391 >gi|300780939|ref|ZP_07090793.1| cfr family radical SAM enzyme [Corynebacterium genitalium ATCC 33030] gi|300532646|gb|EFK53707.1| cfr family radical SAM enzyme [Corynebacterium genitalium ATCC 33030] Length = 377 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 117/376 (31%), Positives = 189/376 (50%), Gaps = 31/376 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + + + EE EAL ++G+P + R QI + Y R D M+D+ R L Sbjct: 20 MPPKHFADLSEEERIEALGELGLP----KFRADQIARHYYGRFEADPSTMTDLPAAQREL 75 Query: 64 LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + V + + +G T K L R + +E+V + R TLC+SSQ Sbjct: 76 VKDSLFPRLLTPVRKVETDNGDTTKTLWRLHDGIL-----LESVLMRYPGRATLCISSQA 130 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RNL+ EI+ QV A +++ + G +++N+ Sbjct: 131 GCGMACPFCATGQGGLDRNLSTAEIVDQVREAAAMM--------------EAEGSRLTNV 176 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239 V MGMGEPL N++ V ++ G S+R +T+ST G P I ++ +E + V L Sbjct: 177 VFMGMGEPLANYNRVVSAVRQIVSPAPHGFGISQRNVTVSTVGLAPAIRKLADEGLSVTL 236 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH ++LR+ LVP+N ++ ++ ++DA R+Y + R++ EY +++ IND A Sbjct: 237 AVSLHTPDDELRDELVPMNNRFTVQDVLDAARYYADQTGR-RVSIEYALIRDINDHDFRA 295 Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L + L G +NLIP NP PG ++ S ++ F + G + +R +G Sbjct: 296 DMLGQKLHDALGPLVHVNLIPLNPTPGSKWDASPRERQDEFVRRVIAQGVTCTVRDTKGQ 355 Query: 357 DILAACGQLKSLSKRI 372 +I AACGQL + K+ Sbjct: 356 EIAAACGQLAADEKQA 371 >gi|312194967|ref|YP_004015028.1| radical SAM enzyme, Cfr family [Frankia sp. EuI1c] gi|311226303|gb|ADP79158.1| radical SAM enzyme, Cfr family [Frankia sp. EuI1c] Length = 397 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 124/369 (33%), Positives = 179/369 (48%), Gaps = 22/369 (5%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIR--DFQGMSDISQEVRHLL 64 L + R+E +++G P R Q+ + + R D GM+D+ VR L Sbjct: 37 RHLADLSRDERRAVAVELGQPA----FRADQLARHYFTRLATPGDTAGMTDVPAAVRAPL 92 Query: 65 NQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 DG TRK R IE+V + R T+CVSSQ G Sbjct: 93 ADALLPQLLTATTTLTCDDGATRKTAWRTVD-----GATIESVLMRYPDRATVCVSSQAG 147 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG L RNLT EI+ QV+ A + + ++SN+V Sbjct: 148 CGMGCPFCATGQGGLTRNLTVAEIVEQVVDAARV------LRRGGLPAGQATDTRLSNVV 201 Query: 184 MMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLA 240 MGMGEPL N+ + +L SD GL S R +T+ST G VP I R+ E + V LA Sbjct: 202 FMGMGEPLANYKALVTALRRISDPAPDGLGISARTLTVSTVGLVPAIGRLAGEGLPVRLA 261 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++LR+ LVPIN ++ + ++DA Y + RI+ EY ++ G+ND P A Sbjct: 262 VSLHAPDDELRDTLVPINTRWKVAEVLDAAWDYAARTGR-RISIEYALIDGVNDQPERAD 320 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L ++L+ P +NLIP NP G + S F ++ G ++ +R RG +I A Sbjct: 321 LLGRLLRDRPVHVNLIPLNPTRGSSWHASAPAGEREFVARLRARGITTTVRDTRGREIAA 380 Query: 361 ACGQLKSLS 369 ACGQL + + Sbjct: 381 ACGQLAADN 389 >gi|262038981|ref|ZP_06012317.1| radical SAM enzyme, Cfr family [Leptotrichia goodfellowii F0264] gi|261747005|gb|EEY34508.1| radical SAM enzyme, Cfr family [Leptotrichia goodfellowii F0264] Length = 357 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 131/371 (35%), Positives = 200/371 (53%), Gaps = 26/371 (7%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 + K ++G E+L+ G+ + +Q++ W++ + + DF ++IS+ R Sbjct: 5 DTKDKIDILGFNLEKLQNIFADTGL----KKFNANQVYDWLHNKLVFDFDKFTNISKHDR 60 Query: 62 HLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 +L + F++ +IS D T K+L R + IE+V I K+R TLCVSS Sbjct: 61 EILKKKFALPKLVHRSHQISEDRDTEKFLFELKDRRL-----IESVLISHKNRHTLCVSS 115 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q+GC + C FC T T K RNL A EIL+Q ++ L + K+ Sbjct: 116 QIGCLIGCDFCATATMKYERNLDASEILMQFYHIQNYLKE--------------KNEKLG 161 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVML 239 N+V MGMGEP N+DNV +S++I + G +FSKR T+STSG VP I + E E + L Sbjct: 162 NVVFMGMGEPFLNYDNVIESINILNSDKGQNFSKRNFTISTSGIVPVINKFTEDENQINL 221 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 AISLH+V +D+R+ L+PIN+ Y ++ L +A +Y + RITFEY+++ +N +DA Sbjct: 222 AISLHSVKDDIRSELMPINKTYKVKELKEALINYQKKT-KNRITFEYILIDDLNCETKDA 280 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L+ L +NLIP+NP G Y +K F +K + +R +G DI Sbjct: 281 FELMNFLHSFSCLVNLIPYNPVAGKPYSTPSKKKQREFYTLLKDKNVNVTLRETKGQDIA 340 Query: 360 AACGQLKSLSK 370 AACGQLK+ + Sbjct: 341 AACGQLKAKKE 351 >gi|260436262|ref|ZP_05790232.1| radical SAM enzyme, Cfr family [Synechococcus sp. WH 8109] gi|260414136|gb|EEX07432.1| radical SAM enzyme, Cfr family [Synechococcus sp. WH 8109] Length = 352 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 122/368 (33%), Positives = 178/368 (48%), Gaps = 37/368 (10%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++L+G EL++ + G R Q+ WIY +G R ++ + R L + Sbjct: 3 QALLGRSAAELQDWAVAQG----QKPFRGRQLHDWIYAKGARSLADITVFPKTWRAALLE 58 Query: 67 H-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + V ++ D T K LL IETV IP R T+CVSSQVGC Sbjct: 59 GGIDVGRLKEVHRSVATDATTKLLLSTED-----GETIETVGIPTDQRLTVCVSSQVGCP 113 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG L R+L EI+ QVL R + R+ S+IV M Sbjct: 114 MACRFCATGKGGLQRSLQTHEIVDQVLSVREAM-----------------DRRPSHIVFM 156 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIGVM 238 GMGEPL N V +++ +D L +RRIT+ST G + ++ E Sbjct: 157 GMGEPLLNSSAVLEAIRCLNDD--LGIGQRRITVSTVGVPKTLPQLAELAMQRLGRAQFT 214 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLHA + LR L+P YP + L++ CRHY ++ R++FEY++L +ND P Sbjct: 215 LAVSLHAPNQRLREELIPTAHAYPYDALLEDCRHYLDVTGR-RVSFEYILLGELNDQPEH 273 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L + G + +NLI +NP E+ + I F ++R G + +R RGLD Sbjct: 274 AAELADRVGGFQSHVNLIAYNPIEEEEFKRPTPQRIEVFRRVLERRGVAVSLRASRGLDQ 333 Query: 359 LAACGQLK 366 AACGQL+ Sbjct: 334 NAACGQLR 341 >gi|302558123|ref|ZP_07310465.1| cfr family radical SAM enzyme [Streptomyces griseoflavus Tu4000] gi|302475741|gb|EFL38834.1| cfr family radical SAM enzyme [Streptomyces griseoflavus Tu4000] Length = 368 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 123/369 (33%), Positives = 183/369 (49%), Gaps = 25/369 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + E +EA++ G R Q+ + + R D + +DI R L + Sbjct: 20 RHLADLTPAERKEAVVAAG----EKPFRAKQLSQHYFARYAHDPELWTDIPAGSRGKLQE 75 Query: 67 HFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +V +S D TRK L + + +E+V + R T+C+SSQ GC Sbjct: 76 ALLPELMTVV-RHLSTDQGTTRKTLWKLFDGTL-----VESVLMRYPDRVTMCISSQAGC 129 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EI+ Q++ G + +P ++SNIV Sbjct: 130 GMNCPFCATGQAGLDRNLSTAEIVHQIV---------DGMRALRDGEVPGGPARLSNIVF 180 Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 MGMGEPL N++ V ++ +D GL S+R IT+ST G VP + R +E LAI Sbjct: 181 MGMGEPLANYNRVVGAIRRLTDPEPDGLGLSQRGITVSTVGLVPAVHRFSDEGFKCRLAI 240 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++LR+ LVP+N ++ + ++DA Y S R++ EY +++ IND Sbjct: 241 SLHAPDDELRDTLVPVNTRWKVREVLDAGFEYAARSGR-RLSIEYALIRDINDQAWRGDR 299 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++LKG P +NLIP NP PG ++ S +D F E I G IR RG +I A Sbjct: 300 LGRMLKGRPVHVNLIPLNPTPGSKWTASRPEDEKAFVEAIAAHGVPVTIRDTRGQEIDGA 359 Query: 362 CGQLKSLSK 370 CGQL + + Sbjct: 360 CGQLAASER 368 >gi|213964408|ref|ZP_03392608.1| radical SAM enzyme, Cfr family [Corynebacterium amycolatum SK46] gi|213952601|gb|EEB63983.1| radical SAM enzyme, Cfr family [Corynebacterium amycolatum SK46] Length = 369 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 124/373 (33%), Positives = 183/373 (49%), Gaps = 31/373 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + + EE + A+ ++G+P R QI + Y R D M+D+ + R Sbjct: 20 MPATHFADLDVEERKAAVKELGLPA----FRADQIARHYYGRLEADPMTMTDLPEADRQK 75 Query: 64 LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + V DG TRK L R G +E+V + R TLC+SSQ Sbjct: 76 VKDSLFPPLLTPVRHITCDDGETRKTLWR-----AGDGTLLESVLMKYPGRATLCISSQA 130 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RNL+ EI+ QV A + + G +++NI Sbjct: 131 GCGMACPFCATGQGGLQRNLSTAEIVDQVREAA--------------ATMAAEGGRLTNI 176 Query: 183 VMMGMGEPLCNFDNVKKSLSIAS--DSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239 V MGMGEPL N++ V ++ + G S R +T+ST GF PNI R+ +E + V L Sbjct: 177 VFMGMGEPLANYNRVLAAIHRITRPSPEGFGISMRNVTVSTVGFAPNIRRLADEDLSVTL 236 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH ++LR+ LVPIN ++ + ++DA R+Y + R++ EY +++ IND A Sbjct: 237 AVSLHTPDDELRDELVPINNRFTVAEVLDAARYYADKTGR-RVSIEYALIRDINDQDWRA 295 Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L K L G +NLIP NP PG ++ S +K F ++ G +R RG Sbjct: 296 DLLGKKLHNALGSRVHVNLIPLNPTPGSKWDASPKKQQEEFVRRVQAQGVPCTVRDTRGN 355 Query: 357 DILAACGQLKSLS 369 +I AACGQL + Sbjct: 356 EIAAACGQLAAEE 368 >gi|283456084|ref|YP_003360648.1| radical SAM family enzyme [Bifidobacterium dentium Bd1] gi|283102718|gb|ADB09824.1| Radical SAM family enzyme [Bifidobacterium dentium Bd1] Length = 389 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 126/375 (33%), Positives = 190/375 (50%), Gaps = 28/375 (7%) Query: 6 KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 K L M +E ++G+P R R Q+ Y D + SD R Sbjct: 34 KPPLHFADMSEDERIAKAKELGLP----RFRVKQLANHYYGHFDVDAEEFSDFPANKRAE 89 Query: 64 LNQHFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + F V +++ +GT K L R + IE+V + +R TLC+SSQV Sbjct: 90 AAEAFFPTLITEVTRQVADEGTTIKTLWRLFDGSL-----IESVLMRYPTRTTLCISSQV 144 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RN++A EI+ QV +A + D + ++SNI Sbjct: 145 GCGMGCPFCATGKLGLTRNMSAGEIVEQVRVAAKAMRD---------GEVAGGPGRLSNI 195 Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239 V MGMGEP+ N+ +V ++ S G S R IT+ST G VP I ++ E I V L Sbjct: 196 VFMGMGEPMGNYRSVLSAVRQISAMPPEGFVISARNITVSTVGVVPGIKKLTAEGIPVRL 255 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA S++LR+ LVP+N+++ ++DA Y L++ RR++ EY +++GIND A Sbjct: 256 AVSLHAPSDELRDELVPMNKRFDTTQVLDAAHDYY-LASKRRVSIEYALMRGINDQAEHA 314 Query: 300 LNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L K L A +N IP NP G ++ S +D F + + ++G ++ +R RG Sbjct: 315 RLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDERRFLDILHQAGVTATLRDTRGQ 374 Query: 357 DILAACGQLKSLSKR 371 DI ACGQL + ++ Sbjct: 375 DIDGACGQLAAKERQ 389 >gi|116073729|ref|ZP_01470991.1| hypothetical protein RS9916_34802 [Synechococcus sp. RS9916] gi|116069034|gb|EAU74786.1| hypothetical protein RS9916_34802 [Synechococcus sp. RS9916] Length = 346 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 126/372 (33%), Positives = 184/372 (49%), Gaps = 37/372 (9%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+G +LE+ + G R Q+ W+Y +G RD G++ + + R L + Sbjct: 3 IALLGRSAADLEQWAVAQG----QSSFRGRQLHDWLYAKGARDLNGITVLPKVWRAALQE 58 Query: 67 H-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + ++ D T K LL IETV IP R T+CVSSQVGC Sbjct: 59 QGVVVGRLQEQLRSVASDATTKLLLGTED-----AETIETVGIPTDQRLTVCVSSQVGCP 113 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG L R+L EI+ QVL R ++ R+ S++V M Sbjct: 114 MACRFCATGKGGLQRSLATHEIVDQVLSIREVM-----------------DRRPSHVVFM 156 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIGVM 238 GMGEPL N D V +++ +D L +RRIT+ST G + ++ E Sbjct: 157 GMGEPLLNIDAVLEAIRCFNDD--LGIGQRRITVSTVGVPRTLPKLAELAMERLGRAQFT 214 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLHA + LR L+P YP E L+D CRHY ++ R++FEY++L G+ND P Sbjct: 215 LAVSLHAPNQQLREELIPTAHAYPFEALLDDCRHYLAITGR-RVSFEYILLGGLNDHPAH 273 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L + G + +NLI +NP E+ + I F ++R G + +R RGLD Sbjct: 274 AEELADRVGGFQSHVNLIAYNPIEEEEFQRPSAERIAGFRRVLERRGVAVSLRASRGLDQ 333 Query: 359 LAACGQLKSLSK 370 AACGQL+ +K Sbjct: 334 NAACGQLRRQNK 345 >gi|17227851|ref|NP_484399.1| hypothetical protein all0355 [Nostoc sp. PCC 7120] gi|17129700|dbj|BAB72313.1| all0355 [Nostoc sp. PCC 7120] Length = 322 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 121/345 (35%), Positives = 175/345 (50%), Gaps = 27/345 (7%) Query: 28 QRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRK 87 Q R Q+ WIY +G+R +S S++ R + I I ++ DGT K Sbjct: 4 QGQPAYRGKQLHDWIYHKGVRSLTDISVFSKQWRAAVAD-VPIGRSTIHHRSVASDGTVK 62 Query: 88 WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147 +LL+ I +E V IP R T+CVS+QVGC + C FC TG RNL EI Sbjct: 63 YLLQLSDGEI-----VEAVGIPTDKRLTVCVSTQVGCPMACDFCATGKGGYKRNLERHEI 117 Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207 + QVL + +++S++V MGMGEPL N +NV L + Sbjct: 118 VDQVLTVQE-----------------DFQQRVSHVVFMGMGEPLLNTENVLAGLRSLNQD 160 Query: 208 MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEML 266 +G +R +TLST G I+ + E + V LA+SLHA + LR L+P R Y +E L Sbjct: 161 VG--IGQRSLTLSTVGIRDRISELAEHHLQVTLAVSLHAPNQALREQLIPSARSYHIEDL 218 Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 + CR Y ++ RI+FEY++L G+ND P AL L K L+G +NLIP+N +Y Sbjct: 219 LAECREYVAITGR-RISFEYILLAGVNDLPEHALELSKHLRGFQNHVNLIPYNSIDEVDY 277 Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 I F +++ + +R RGL+ AACGQL++ + R Sbjct: 278 KRPSGDRIQAFLTVLQQQHIAVSVRYSRGLEADAACGQLRTKASR 322 >gi|284039833|ref|YP_003389763.1| radical SAM enzyme, Cfr family [Spirosoma linguale DSM 74] gi|283819126|gb|ADB40964.1| radical SAM enzyme, Cfr family [Spirosoma linguale DSM 74] Length = 349 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 124/365 (33%), Positives = 187/365 (51%), Gaps = 19/365 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ + + +L++ K G R Q+ +W++ + F+ M+++S R LLN Sbjct: 2 KQDIRKLTAVQLKDWFTKNG----EQGFRAKQVHEWLWKKSALSFEQMTNLSLSTRELLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +F I + ++ S DGT K + + V I + + R T CVSSQVGCS Sbjct: 58 ANFEIRPLTVDQQQRSNDGTIKSSFKLFDGNLVEGVLIPALRNDDLDRMTACVSSQVGCS 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTC FC TG RNL A EI QV+ + + ++NIV M Sbjct: 118 LTCKFCATGYMDRKRNLDAAEIYDQVVAIDRQAKE-------------NYDAPLTNIVYM 164 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLH 244 GMGEPL N+ NV +S+ + GL S +RIT+ST+G I ++G +++ LA+SLH Sbjct: 165 GMGEPLLNYKNVLESVDRITSPDGLGMSPKRITVSTAGIAKMIRQLGDDDVKFNLALSLH 224 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++ R+ ++PIN LE L DA Y RITFEY++ ND+ +DA L K Sbjct: 225 AANDQKRDQIMPINESNTLEALGDAL-TYFYKKTGTRITFEYILFYNFNDTLQDAQELWK 283 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 K +PAK+N+I +NP + +D + + F+ ++ G +R RG DI AACGQ Sbjct: 284 FTKRVPAKVNIIEYNPIAEANFKNTDPQTLDKFAGFLESKGVIVNVRRSRGKDIDAACGQ 343 Query: 365 LKSLS 369 L + Sbjct: 344 LAGKT 348 >gi|251770958|gb|EES51543.1| radical SAM family protein [Leptospirillum ferrodiazotrophum] Length = 357 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 144/365 (39%), Positives = 193/365 (52%), Gaps = 23/365 (6%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ- 66 +L+ E L K G P R Q+ W+Y R D + MS+I VR LL+ Sbjct: 2 NLLDHPPSTWGEILEKRGHPA----YRGRQVAHWVYQRLTTDPRKMSNIPPGVRDLLSSG 57 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 S+ P ++ S DGT K LR + IE+V IP K + TLC+S+Q GC + Sbjct: 58 TLSLDLPTVLSTAQSLDGTVKMALRLQDGPV-----IESVLIPRKGQWTLCLSTQAGCGI 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC T + L RNL+ EIL Q LLA + P E I +IV MG Sbjct: 113 GCRFCRTASMGLTRNLSTAEILSQWLLAARFVETLPPGES-----------HIDHIVFMG 161 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245 MGEPL N + + ++ + G S RRIT+STSG VP I +GE GV LAISL A Sbjct: 162 MGEPLANLEALIPAIRSLTHPDGAGLSPRRITVSTSGLVPRIDTLGEANTGVRLAISLCA 221 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + LR ++P+ R Y +E ++ ACR +P L N RITFEYV+L G+NDSP A L ++ Sbjct: 222 PDDALRREIMPVGRIYSIEEILAACRRFP-LRNRDRITFEYVLLAGVNDSPLQARQLGRL 280 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L +K+NLIPFNP+PG Y + F E + ++ +R G D+LAACGQL Sbjct: 281 LAPFRSKVNLIPFNPFPGSPYHRPTDSSVAAFQEVLAGFHITATVRKSMGPDVLAACGQL 340 Query: 366 KSLSK 370 S+ Sbjct: 341 ARESQ 345 >gi|283782458|ref|YP_003373213.1| radical SAM enzyme, Cfr family [Pirellula staleyi DSM 6068] gi|283440911|gb|ADB19353.1| radical SAM enzyme, Cfr family [Pirellula staleyi DSM 6068] Length = 391 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 136/370 (36%), Positives = 200/370 (54%), Gaps = 36/370 (9%) Query: 8 SLIGMMR----------EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDIS 57 L+G R EL+ L + G P R +Q+ KW++ G F M+D+ Sbjct: 27 DLLGKTRMKHLAEPSVWNELKTWLTERGYPA----YRATQVRKWVFELGASSFDEMTDLP 82 Query: 58 QEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLC 117 +++R L F++ ++V + S DGT K L+ +P G IE V + + R ++C Sbjct: 83 KKLRDELAPEFTLWTGKVVTKSESPDGTEKLLVEYP-----GGGRIECVLLRDGDRRSIC 137 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 VSSQVGC++ C FC +G + RNLTA EI+ Q+LL + LL + Sbjct: 138 VSSQVGCAMGCVFCASGLDGVDRNLTAGEIVEQMLLLQRLLPE---------------KE 182 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIG 236 ++S+IVMMGMGEPL N D+V ++L A+ GL S RRIT+ST G + ++ E Sbjct: 183 RLSHIVMMGMGEPLANIDHVLEALGEATREDGLGISPRRITISTVGLPAALDKLCNLEAK 242 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 LA+SLHA +N+LR LVPIN+ +E +I++ Y S R+TFEYV+L G+ND P Sbjct: 243 YHLAVSLHAPNNELRTRLVPINKAIGIEKVIESADRYFETSGR-RLTFEYVLLAGVNDHP 301 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 A L ++L G A +N+IP+NP G Y I F + +G + R +G Sbjct: 302 DHAQELAELLAGRTAMLNVIPYNPVAGLPYKTPSGNAIHRFRNILVDAGINVKFRQRKGS 361 Query: 357 DILAACGQLK 366 +I AACGQL+ Sbjct: 362 EINAACGQLR 371 >gi|229495911|ref|ZP_04389637.1| radical SAM enzyme, Cfr family [Porphyromonas endodontalis ATCC 35406] gi|229317224|gb|EEN83131.1| radical SAM enzyme, Cfr family [Porphyromonas endodontalis ATCC 35406] Length = 339 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 130/364 (35%), Positives = 192/364 (52%), Gaps = 28/364 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+GM+ EEL L IG+P + Q+ WIY + + F M++IS R LL + Sbjct: 2 ITLLGMLPEELTGLALSIGMP----KFAGRQLADWIYNKRVTSFDEMTNISLRHRALLQE 57 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 +I V S DGTRK+L G +E+V+IPE R TLCVSSQ+GC + Sbjct: 58 KATIGRKAPVARADSKDGTRKFLFAVGD----GAQYVESVFIPEGDRATLCVSSQIGCKM 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG Q NLT+ EI+ Q+L K++NIV MG Sbjct: 114 DCLFCMTGKQGFKGNLTSAEIVNQILSIPDSD-------------------KLTNIVYMG 154 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N + V KS++ + GL+ S +RITLS+ G P +++ E+ LAISLH Sbjct: 155 MGEPLDNVEAVLKSIACFTHPSGLAMSPKRITLSSIGLEPGLSKFLEQCSCHLAISLHNA 214 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 + R ++PI R P+E I+ + Y S RR+TFEY++ G+ND A L++++ Sbjct: 215 LPEERLSMMPIERAMPIEKTIETLKRY-NFSGQRRLTFEYIVFGGLNDDIAHAKALLRLI 273 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + + INLI ++ P S ++ + F++ + +G + IR RG DI AACG L Sbjct: 274 RPLECHINLIRYHRIPNVALPSSQEERMQRFADYLNGAGVPTTIRASRGEDIAAACGMLS 333 Query: 367 SLSK 370 + + Sbjct: 334 AQHQ 337 >gi|300783906|ref|YP_003764197.1| ribosomal RNA large subunit methyltransferase N [Amycolatopsis mediterranei U32] gi|299793420|gb|ADJ43795.1| ribosomal RNA large subunit methyltransferase N [Amycolatopsis mediterranei U32] Length = 368 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 121/372 (32%), Positives = 183/372 (49%), Gaps = 26/372 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 L L + E A+ ++G R Q+ + R D + M+DI R Sbjct: 15 LPPRHLADLSVSERAAAVAELG----EKPFRAKQLSNHYFSRLTVDPEEMTDIPAASRQR 70 Query: 64 LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L V + DG TRK L R + +E+V + R TLC+SSQ Sbjct: 71 LVADLMPTLLTEVRALAADDGATRKTLWRAHDGTL-----LESVLMRYPDRATLCISSQA 125 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RNL+ EI+ QV A +++ D +P ++SNI Sbjct: 126 GCGMACPFCATGQGGLDRNLSTAEIVDQVRSAAAVMRD---------GAMPGGPGRLSNI 176 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239 V MGMGEPL N+ V ++ +D GL +R +T+ST G P I ++ +E + V L Sbjct: 177 VFMGMGEPLANYKRVVAAVRRITDPAPGGLGIGQRSVTVSTVGLAPAIRKLADEKMQVRL 236 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH ++LR+ LVP+N ++ ++ ++ A R+Y S R++ EY +++ IND P A Sbjct: 237 AVSLHTPDDELRDTLVPVNERWSVDEVLSAARYYADTSGR-RVSIEYALIRDINDQPWRA 295 Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L K L+ G +N+IP NP PG ++ S + F + G + +R RG Sbjct: 296 ELLAKRLRKHLGQLVHVNVIPLNPTPGSKWDASPKPVEREFVRLVNAGGVACTVRDTRGQ 355 Query: 357 DILAACGQLKSL 368 +I AACGQL + Sbjct: 356 EIAAACGQLAAE 367 >gi|237750344|ref|ZP_04580824.1| ribosomal RNA large subunit methyltransferase N [Helicobacter bilis ATCC 43879] gi|229373874|gb|EEO24265.1| ribosomal RNA large subunit methyltransferase N [Helicobacter bilis ATCC 43879] Length = 366 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 129/374 (34%), Positives = 199/374 (53%), Gaps = 32/374 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 ++ +ELE + + R QI+ W+Y + + + M +I + ++ +L Q Sbjct: 16 NIYSYHLDELESLIT--------PKFRAKQIYNWLYKHYVSNIESMKNIPKNLQEILKQT 67 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEI--------ETVYIPEKSRGTLCVS 119 FS + + + S DGT+K+L + V I E + + + T CVS Sbjct: 68 FSFPNLKPIRIEESGDGTKKYLFQTSDGATFESVFIKMREKEYDENNRVKKSEKYTFCVS 127 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 SQVGC + C+FC T VRNL+A EI+ QV+ + K Sbjct: 128 SQVGCRVGCAFCSTAKGGFVRNLSAGEIVEQVVALKRDNN--------------LSAHKS 173 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238 NIV MGMGEPL N +NV K++ I S GL + RR T+STSG P I ++G +GV Sbjct: 174 INIVFMGMGEPLDNLNNVAKAIKILSHEEGLCIATRRQTISTSGIAPQIEKLGAMNLGVQ 233 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 +A+SLHAV + LR+ L+P+N+ Y +E ++ A +++P L +RI FEY+++K IND Sbjct: 234 IALSLHAVDDSLRSRLIPMNKVYNIERVLQALKNFP-LDTRKRILFEYLVIKDINDDLAS 292 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L+K+L G AK+NLIPFNP E+ + F++ + + G + IR +G+DI Sbjct: 293 AKKLVKLLHGFRAKVNLIPFNPHAESEFQRPCIDKMQGFADYLYKRGIVATIRESKGIDI 352 Query: 359 LAACGQLKSLSKRI 372 AACGQL++ + Sbjct: 353 SAACGQLRAKQMKA 366 >gi|160887188|ref|ZP_02068191.1| hypothetical protein BACOVA_05204 [Bacteroides ovatus ATCC 8483] gi|156107599|gb|EDO09344.1| hypothetical protein BACOVA_05204 [Bacteroides ovatus ATCC 8483] Length = 344 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 130/367 (35%), Positives = 198/367 (53%), Gaps = 29/367 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K L+GM EL+ ++G+P QI W+Y + + M+++S + R L Sbjct: 1 MSKYPLLGMTLVELQSLTKRLGMPG----FAAKQIASWLYEKKVASIDDMTNLSLKHREL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L Q++ + VDE S DGT K+L + +G +E+VYIP+ R TLCVSSQVG Sbjct: 57 LKQNYEVGAEAPVDEMRSVDGTVKYLYK-----VGENHFVESVYIPDDDRATLCVSSQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG Q NLTA +I+ Q+ K++N+V Sbjct: 112 CKMNCKFCMTGKQGYTANLTASQIINQI-------------------HSLPERDKLTNVV 152 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N D V K+L + + + G ++S +RITLST G + R EE LAISL Sbjct: 153 MMGMGEPLDNLDEVLKALELLTATYGYAWSPKRITLSTVGLRKGLQRFIEENDCHLAISL 212 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ R L+P + + + +++ ++Y S RR++FEY++ KG+NDS A L+ Sbjct: 213 HSPLTVQRAELMPAEKAFSITEMVELLKNY-DFSKQRRLSFEYIVFKGLNDSQVYAKELL 271 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+L+G+ ++NLI F+ PG + +D + F + + G + IR+ RG DI AACG Sbjct: 272 KLLRGLDCRVNLIRFHAIPGVDLEGADMDTMTRFRDNLTSHGLFTTIRSSRGEDIFAACG 331 Query: 364 QLKSLSK 370 L + + Sbjct: 332 MLSTAKQ 338 >gi|193215236|ref|YP_001996435.1| radical SAM enzyme, Cfr family [Chloroherpeton thalassium ATCC 35110] gi|254807164|sp|B3QS43|RLMN_CHLT3 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|193088713|gb|ACF13988.1| radical SAM enzyme, Cfr family [Chloroherpeton thalassium ATCC 35110] Length = 369 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 143/374 (38%), Positives = 192/374 (51%), Gaps = 32/374 (8%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN + K + + E L + G P R QI+ WIY G+ DF M ++S Sbjct: 1 MNEV-KHDIKALSLEALMALINSYGQPA----FRAKQIFHWIYAHGVTDFAQMKNLSASF 55 Query: 61 RHLLNQHFSIIYPEIVDEKIS----CDGTRKWLLRFPARCIGGPVEIETVYIPEKS--RG 114 + LL+QHF++ + + +S + T K+L R IE+V+IP S R Sbjct: 56 QTLLSQHFTVSSIQPHADTVSHEITPEQTVKFLFRLSDE-----QSIESVFIPSDSTSRN 110 Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 TLC+SSQVGC+ C FC TG +RNLT EIL QVL LGD Sbjct: 111 TLCISSQVGCAFACKFCATGYMGFIRNLTIGEILDQVLWVNRWLGD-------------Q 157 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS-MGLSFSKRRITLSTSGFVPNIARVGE 233 G KI+N+V MGMGEPL NFDN ++ I ++ S R+IT+ST GF+P I R+ + Sbjct: 158 RGGKITNVVFMGMGEPLANFDNCLAAIRILTNPDYAFQISTRKITVSTVGFIPGIQRLID 217 Query: 234 E-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 I LAISLH+ +R L+PI ++Y L L Y + + ITFEY ++ I Sbjct: 218 TGINCKLAISLHSAHQAIREELIPIAKEYSLATLKAILTRY-NQAYKQPITFEYSLIHKI 276 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 NDS +DA+ L K KGI KINLI +N +YL S + F G + +R Sbjct: 277 NDSEQDAILLSKFCKGINCKINLIDYNSVDNIDYLPSPEGHKQAFIRKCIEHGLTVTVRK 336 Query: 353 PRGLDILAACGQLK 366 RG DI AACGQL Sbjct: 337 SRGADIQAACGQLA 350 >gi|310819181|ref|YP_003951539.1| ribosomal RNA large subunit methyltransferase n [Stigmatella aurantiaca DW4/3-1] gi|309392253|gb|ADO69712.1| Ribosomal RNA large subunit methyltransferase N [Stigmatella aurantiaca DW4/3-1] Length = 360 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 130/373 (34%), Positives = 190/373 (50%), Gaps = 29/373 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDI--SQEVRHLL 64 SL + R L + L + G +W+ +Y R ++ + + E+ L Sbjct: 10 VSLHDLSRAALGQRLAEWGYSA----FHRDALWEALYRRHVKSLDELEGLVRP-ELVTRL 64 Query: 65 NQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 +H + P + E S DG T K LLR IETV + K R T+CVS+Q G Sbjct: 65 REHTCLRSPTVHHETFSSDGHTHKLLLRQHD-----GQTIETVLMRFKGRATVCVSTQAG 119 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C FC TG L R+L+ EI+ QVL ++ G + NIV Sbjct: 120 CAMGCVFCATGQMGLARHLSPGEIVAQVLHV--------------VGLLRQTGETLRNIV 165 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242 +MGMGEPL N+D +++ I D GL+ R ITLST G VP I R+ +E V LA+S Sbjct: 166 LMGMGEPLHNYDATLEAVDILVDPRGLAIGPRFITLSTVGVVPGIRRLADEDRPVQLAVS 225 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LH ++ R LVP+ +++PL L+DACR+Y RI FE+ ++ G ND+ A L Sbjct: 226 LHGATDAERAALVPVGKRWPLNELMDACRYYSEKRGR-RIFFEWTLIAGQNDTVDQAHTL 284 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LKG+ A +N+IP NP G S + + F + + G S +R RG+DI A C Sbjct: 285 GQLLKGMEAHVNVIPLNPTVGFGGTPSTPEAVRAFQQVLTSYGLPSTVRQRRGIDIDAGC 344 Query: 363 GQLKSLSKRIPKV 375 GQLK+ +R + Sbjct: 345 GQLKAAVERPRRS 357 >gi|87308293|ref|ZP_01090434.1| hypothetical protein DSM3645_12021 [Blastopirellula marina DSM 3645] gi|87288850|gb|EAQ80743.1| hypothetical protein DSM3645_12021 [Blastopirellula marina DSM 3645] Length = 351 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 129/374 (34%), Positives = 197/374 (52%), Gaps = 32/374 (8%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 + L+ +++ G+P + R QI WI + F+ M+++ + +R L + + Sbjct: 9 LDLTSLQALVVQWGLP----KFRAQQIRSWIVENRAQSFEDMANLPKPLRSQLAEKAQLW 64 Query: 72 YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131 EI + DGT K LL+ IE V + + R T+C+S+QVGC++ C FC Sbjct: 65 STEIARHTTAADGTEKLLLQLHD-----GGRIECVLLRDGDRRTICISTQVGCAMGCVFC 119 Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191 +G + RNLT EI+ Q+L + LL VG ++S+IV+MGMGEPL Sbjct: 120 ASGLDGVERNLTVGEIIEQMLRLQRLL---------------PVGERLSHIVVMGMGEPL 164 Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDL 250 N D + +L AS GL S RRIT+ST G P I ++ + + LA+SLHA + L Sbjct: 165 ANVDRLLSALDFASSEEGLGISHRRITISTVGLPPAIRKLADRDSRYHLAVSLHAPDDQL 224 Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310 RN +VP N+ + +++A HY +S R+TFEYV+L +ND P A L K+L+G P Sbjct: 225 RNQIVPTNKNIGIHAILEAADHYFEISGR-RLTFEYVLLAELNDQPEHAHRLAKLLRGRP 283 Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 A +N+IP+NP G Y ++ F ++ +G + R +G I AACGQL+ Sbjct: 284 ALLNIIPYNPVAGLPYRTPSKEAQHAFRAILEGAGLTVKFRQKKGDKINAACGQLR---- 339 Query: 371 RIPKVPRQEMQITG 384 P +QI+G Sbjct: 340 --RNTPENLVQISG 351 >gi|315635461|ref|ZP_07890727.1| cfr family radical SAM enzyme [Arcobacter butzleri JV22] gi|315480219|gb|EFU70886.1| cfr family radical SAM enzyme [Arcobacter butzleri JV22] Length = 360 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 131/372 (35%), Positives = 201/372 (54%), Gaps = 32/372 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 S+ +EL+E L R Q++ W+Y + + M ++ +E+ L + Sbjct: 7 PSIYDYTLDELKEILK--------PSFRAKQVYNWLYKKYASSYDEMKNLPKELVEDLKE 58 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEI--------ETVYIPEKSRGTLCV 118 ++ I +IV ++ S DG+ K+L + V + E I + T+C+ Sbjct: 59 NYPIDIMQIVKKEQSRDGSIKYLFKLRDNHTVEAVLLLMKDKKIDEDGQIVRSEKYTVCI 118 Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 SSQVGC + CSFC T VRNLT E + Q++ + K Sbjct: 119 SSQVGCKVGCSFCLTAKGGFVRNLTVGEYIAQIVNIKRDNDI--------------AENK 164 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGV 237 NIV MGMGEPL NFDN K++ I S+ GL+ S+RR T+STSG I ++GE ++ + Sbjct: 165 ALNIVYMGMGEPLDNFDNFTKAVEIFSELDGLAISRRRQTVSTSGIATKIKKLGEKDLQI 224 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 LAISLHAV ++LR+ L+P+N+ Y + +I+A + +P + +++ FEY+++K NDS Sbjct: 225 QLAISLHAVDDELRSELIPMNKAYNIASIIEAVKAFP-VDTRKKVMFEYLVIKDKNDSIE 283 Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 A L+ +L GI AK+NLI FNP+PG Y +KD++ F + + + G IR +GLD Sbjct: 284 AAKKLVSLLNGIQAKVNLIYFNPYPGTSYQRPQEKDMLKFKDFLNQKGVICTIRESKGLD 343 Query: 358 ILAACGQLKSLS 369 I AACGQLK Sbjct: 344 ISAACGQLKEKE 355 >gi|115379954|ref|ZP_01467009.1| radical SAM enzyme, Cfr family [Stigmatella aurantiaca DW4/3-1] gi|115363034|gb|EAU62214.1| radical SAM enzyme, Cfr family [Stigmatella aurantiaca DW4/3-1] Length = 384 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 130/373 (34%), Positives = 190/373 (50%), Gaps = 29/373 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDI--SQEVRHLL 64 SL + R L + L + G +W+ +Y R ++ + + E+ L Sbjct: 34 VSLHDLSRAALGQRLAEWGYSA----FHRDALWEALYRRHVKSLDELEGLVRP-ELVTRL 88 Query: 65 NQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 +H + P + E S DG T K LLR IETV + K R T+CVS+Q G Sbjct: 89 REHTCLRSPTVHHETFSSDGHTHKLLLRQHD-----GQTIETVLMRFKGRATVCVSTQAG 143 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C FC TG L R+L+ EI+ QVL ++ G + NIV Sbjct: 144 CAMGCVFCATGQMGLARHLSPGEIVAQVLHV--------------VGLLRQTGETLRNIV 189 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAIS 242 +MGMGEPL N+D +++ I D GL+ R ITLST G VP I R+ +E V LA+S Sbjct: 190 LMGMGEPLHNYDATLEAVDILVDPRGLAIGPRFITLSTVGVVPGIRRLADEDRPVQLAVS 249 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LH ++ R LVP+ +++PL L+DACR+Y RI FE+ ++ G ND+ A L Sbjct: 250 LHGATDAERAALVPVGKRWPLNELMDACRYYSEKRGR-RIFFEWTLIAGQNDTVDQAHTL 308 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LKG+ A +N+IP NP G S + + F + + G S +R RG+DI A C Sbjct: 309 GQLLKGMEAHVNVIPLNPTVGFGGTPSTPEAVRAFQQVLTSYGLPSTVRQRRGIDIDAGC 368 Query: 363 GQLKSLSKRIPKV 375 GQLK+ +R + Sbjct: 369 GQLKAAVERPRRS 381 >gi|29349780|ref|NP_813283.1| ribosomal RNA large subunit methyltransferase N [Bacteroides thetaiotaomicron VPI-5482] gi|253569856|ref|ZP_04847265.1| ribosomal RNA large subunit methyltransferase N [Bacteroides sp. 1_1_6] gi|81442826|sp|Q89ZK5|RLMN_BACTN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|29341691|gb|AAO79477.1| conserved hypothetical protein [Bacteroides thetaiotaomicron VPI-5482] gi|251840237|gb|EES68319.1| ribosomal RNA large subunit methyltransferase N [Bacteroides sp. 1_1_6] Length = 345 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 128/368 (34%), Positives = 196/368 (53%), Gaps = 29/368 (7%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 + K L+GM EL+ + ++G+P QI W+Y + + M+++S + R Sbjct: 1 MMSKYPLLGMTLIELQSLVKRLGMPG----FAAKQIASWLYDKKVTSIDEMTNLSLKYRE 56 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 LL Q++ + V+E S DGT K+L +G +E+VYIP+ R TLC+SSQV Sbjct: 57 LLKQNYEVGAEAPVEEMRSVDGTVKYLY-----PVGENHFVESVYIPDDERATLCISSQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG Q NLTA +I+ Q+ K++N+ Sbjct: 112 GCKMNCKFCMTGKQGYSANLTAHQIINQI-------------------HSLPERDKLTNV 152 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VMMGMGEPL N + V K+L I + S G ++S +RIT+ST G + R EE LAIS Sbjct: 153 VMMGMGEPLDNLEEVLKALDILTGSYGYAWSPKRITVSTVGLRKGLRRFIEESDCHLAIS 212 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LH+ R L+P + + + +++ ++Y S RR++FEY++ KG+NDS A L Sbjct: 213 LHSPVTAQRAELMPAEKAFSITEMVELLKNY-DFSKQRRLSFEYIVFKGLNDSQVYAKEL 271 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +K+L+G+ ++NLI F+ PG +D + F + + G + IR RG DI AAC Sbjct: 272 LKLLRGLDCRMNLIRFHSIPGVALEGADMDTMTRFRDYLTTHGLFTTIRASRGEDIFAAC 331 Query: 363 GQLKSLSK 370 G L + + Sbjct: 332 GMLSTAKQ 339 >gi|310287528|ref|YP_003938786.1| radical SAM enzyme, Cfr family [Bifidobacterium bifidum S17] gi|311064441|ref|YP_003971166.1| radical SAM family protein [Bifidobacterium bifidum PRL2010] gi|309251464|gb|ADO53212.1| radical SAM enzyme, Cfr family [Bifidobacterium bifidum S17] gi|310866760|gb|ADP36129.1| Radical SAM family enzyme [Bifidobacterium bifidum PRL2010] Length = 396 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 124/371 (33%), Positives = 188/371 (50%), Gaps = 26/371 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L+ M +E +G+P + R Q+ + R + + +D+ R + + Sbjct: 40 VHLVDMTPDERIARAKDLGLP----KFRVKQLANHYFGRLETESEAFTDLPAATRGDIVE 95 Query: 67 HFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + V +++ GT K L R IE+V + +R TLC+SSQVGC Sbjct: 96 AFFPPLIDEVTHQVADQGTTIKTLWRLFD-----GSHIESVLMRYPNRTTLCISSQVGCG 150 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG L RN++ EIL QV +A ++ D + ++SNIV M Sbjct: 151 MGCPFCATGKLGLTRNMSTGEILEQVRVAARMMRD---------GEVAGGPGRLSNIVFM 201 Query: 186 GMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAIS 242 GMGEP+ N+ +V ++ S G S R IT+ST G VP I ++ E I V LA+S Sbjct: 202 GMGEPMGNYRSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIRKLTAEGIPVRLAVS 261 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA S+ LR+ LVP+N+++ ++DA Y LS+ RR++ EY +++GIND A L Sbjct: 262 LHAPSDALRDELVPMNKRFNTTQVLDAAHDYF-LSSKRRVSIEYALMRGINDQAEHARLL 320 Query: 303 IKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 K L A +N IP NP G + S +D F + + +G ++ +R RG DI Sbjct: 321 AKRLNHYGDDWAHVNPIPLNPIEGSRWTASKPEDEQQFLDILHHAGITATLRDTRGSDID 380 Query: 360 AACGQLKSLSK 370 ACGQL + +K Sbjct: 381 GACGQLAAKTK 391 >gi|262276957|ref|ZP_06054750.1| radical SAM enzyme, Cfr family [alpha proteobacterium HIMB114] gi|262224060|gb|EEY74519.1| radical SAM enzyme, Cfr family [alpha proteobacterium HIMB114] Length = 357 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 153/366 (41%), Positives = 228/366 (62%), Gaps = 19/366 (5%) Query: 11 GMMREELEEALLKI-GIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69 + E++ + ++ MR +Q+WK+ Y +G D S+++Q +R L + + Sbjct: 6 DLNYREVKSIFSNNFNLDKKKSSMRANQVWKFYYQKGYSDPNLFSNLTQSLRDELLKIVN 65 Query: 70 IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129 P+I ++++S DGT KWLL + + +ETVYIP ++ TLC+SSQVGC+L C Sbjct: 66 FSRPKIKNKQVSKDGTIKWLLELNDKNL-----VETVYIPSETHSTLCISSQVGCTLNCK 120 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 FC+TG Q LV+NL++ EI+ Q+L+A+ L D+ +KI+NIV MGMGE Sbjct: 121 FCHTGIQPLVKNLSSNEIISQILIAKDELNDW------------KEQKKINNIVYMGMGE 168 Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSND 249 P NF+N+KKS+ I D GL+FS ++IT+STSG PNI + EIG LA+SLHA +N+ Sbjct: 169 PFYNFENIKKSVEILKDENGLNFSNKKITVSTSGISPNIKKAANEIGTYLALSLHAPNNE 228 Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309 +RN ++PIN+KY +E +I+ C Y N +I EYV+LK +ND+ + A L KI+ Sbjct: 229 IRNEIMPINKKYNIENIIEHCSQY-AKENGEKIFIEYVLLKDVNDTEQCAKELSKIMSQF 287 Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369 P K+NLI FNPWPG +Y + ++ F E IK++G+ +R RG DIL ACGQLK+ S Sbjct: 288 PCKLNLIQFNPWPGVKYKTATKEQTSKFIEIIKKNGHVVTLRKSRGDDILGACGQLKTAS 347 Query: 370 KRIPKV 375 +R + Sbjct: 348 EREKRS 353 >gi|187734933|ref|YP_001877045.1| radical SAM enzyme, Cfr family [Akkermansia muciniphila ATCC BAA-835] gi|205829710|sp|B2UNF2|RLMN_AKKM8 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|187424985|gb|ACD04264.1| radical SAM enzyme, Cfr family [Akkermansia muciniphila ATCC BAA-835] Length = 359 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 129/370 (34%), Positives = 206/370 (55%), Gaps = 36/370 (9%) Query: 13 MREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIY 72 E+L L + G H + RT Q+ W++ + + F MS++ +++LL ++F Sbjct: 11 TEEKLLAFLTEHG----HTKFRTQQVLDWVWRKRVTTFDAMSNLPPALKNLLAENFRFHT 66 Query: 73 PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP--------EKSRGTLCVSSQVGC 124 PEIV+ S D TRK+L + + +E+V IP + R TLCVSSQVGC Sbjct: 67 PEIVEIHGSADTTRKFLTKMEDGSL-----VESVIIPAAAAENGEKSERVTLCVSSQVGC 121 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC +G L R+LT EI+ Q+L A ++ G ++++NIV Sbjct: 122 AFGCKFCASGLLGLKRHLTTGEIIGQILSAEAIAG-----------------KRVNNIVF 164 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISL 243 MGMGEPL NFDN+ +L I + GL R IT+STSGFVP + ++ + LA+SL Sbjct: 165 MGMGEPLSNFDNLADALEIITSHRGLEIGARHITISTSGFVPGLKKLAAYPRQIRLAVSL 224 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H ++++R+ ++P+N+K+PL LI A + N T EY++++ INDSP+DA +L+ Sbjct: 225 HGATDEVRDQIMPVNKKWPLSQLIPALEEWNRGRNQMP-TLEYILIRDINDSPKDASHLV 283 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +I K + AK+NLIP+N G + ++ +F + + ++ +R +G DI AACG Sbjct: 284 RIAKRLHAKVNLIPYNTVEGLPWKRPSEERCRSFRDAVHKARIPVTMRYEKGHDINAACG 343 Query: 364 QLKSLSKRIP 373 QL+ ++ Sbjct: 344 QLRLRKEQEK 353 >gi|332300071|ref|YP_004441992.1| Ribosomal RNA large subunit methyltransferase N [Porphyromonas asaccharolytica DSM 20707] gi|332177134|gb|AEE12824.1| Ribosomal RNA large subunit methyltransferase N [Porphyromonas asaccharolytica DSM 20707] Length = 341 Score = 378 bits (970), Expect = e-103, Method: Composition-based stats. Identities = 125/363 (34%), Positives = 187/363 (51%), Gaps = 30/363 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 ++G +L E + +G+P + QI W+Y + + + M+++S++ R LL H+ Sbjct: 7 ILGKTPAQLTELAVGLGLP----KYTGQQIADWLYQKHVSTWDEMTNLSKKARALLASHY 62 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 I ++ S DGT K+L G +ETV IPE R TLCVSSQ GC + C Sbjct: 63 EIGRAAPHLQQTSRDGTVKYLF------AAGGGFVETVMIPEGDRATLCVSSQRGCKMNC 116 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG Q NL+A EIL Q+L + +++NIV MGMG Sbjct: 117 LFCMTGKQGFGANLSASEILNQILSVPEV-------------------NELTNIVFMGMG 157 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN 248 EP+ N D + + + +D GL+ S +RIT+ST G P + R EE LAISLH Sbjct: 158 EPMDNIDTLLQVIRCLTDPKGLAMSPKRITVSTIGLRPGLERFLEECTCHLAISLHNPLP 217 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 + R ++P+ R PL + RHY S RR+TFEY++ G+ND+PR L ++L Sbjct: 218 EERLAIMPVERAMPLADTVALLRHY-DWSRQRRLTFEYIVFSGLNDTPRHLAALKRLLSQ 276 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 + +NLI ++ P + SD + + + +G + IRT RG DI AACG L + Sbjct: 277 LDCHVNLIRYHRIPHIDLPSSDMTRMEWLRDRLCEAGIPTTIRTSRGEDISAACGMLSTQ 336 Query: 369 SKR 371 ++ Sbjct: 337 EQQ 339 >gi|332826949|gb|EGJ99746.1| ribosomal RNA large subunit methyltransferase N [Dysgonomonas gadei ATCC BAA-286] Length = 335 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 122/360 (33%), Positives = 188/360 (52%), Gaps = 29/360 (8%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 M +E + G+P R QI W+Y + + M++IS R LL++ + + Sbjct: 1 MTMDEFYGVAGECGLP----RFAAKQIADWVYKKRVTSIDQMTNISVANRALLSEKYDVG 56 Query: 72 YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131 ++ + S DGT K+L + + IE V IPE R TLCVSSQVGC + C FC Sbjct: 57 RYIPLEFQQSVDGTVKYLFKTENDKL-----IEAVMIPEDDRATLCVSSQVGCKMNCLFC 111 Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191 TG Q NLTA EIL Q+ R ++N+V MGMGEPL Sbjct: 112 MTGKQGFNGNLTANEILNQLYSVRE-------------------AEDLTNVVFMGMGEPL 152 Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLR 251 N++ +KK+L I + G+++S +RIT+ST+G P + R +E LAIS+H+ + R Sbjct: 153 DNYEQLKKTLEIMTADYGMAWSPKRITVSTTGVTPKLKRFLDESNAHLAISIHSPEKEQR 212 Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311 ++P + +P+ ++D + Y + RR++FEY+M NDS A L ++L+GI Sbjct: 213 LSIMPAEKAFPIAGVMDLLKEY-DWTKQRRLSFEYIMFDNFNDSLVHAKELAQMLRGIEC 271 Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 ++NLI F+ P S ++ + F + + G +S IR RG DI AACG L ++ + Sbjct: 272 RVNLIRFHAIPNVNLKTSTKEKMEAFRDYLTSKGVTSTIRASRGEDIFAACGMLSTMKSK 331 >gi|307565075|ref|ZP_07627588.1| radical SAM enzyme, Cfr family [Prevotella amnii CRIS 21A-A] gi|307346244|gb|EFN91568.1| radical SAM enzyme, Cfr family [Prevotella amnii CRIS 21A-A] Length = 347 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 123/373 (32%), Positives = 192/373 (51%), Gaps = 31/373 (8%) Query: 1 MN--FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQ 58 MN ++K L+G EL++ +G+P QI +W+Y++ I+ M++IS+ Sbjct: 1 MNKTIIEKLPLLGKTLFELKQIAKDLGLPA----FAGKQIAEWLYIKHIKSIDEMTNISK 56 Query: 59 EVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118 R L++ ++I +D + S DGT K+L +ETVYIP+ R TLCV Sbjct: 57 ANREKLSKVYTIGCKAPIDAQYSKDGTIKYLFPTEEDKF-----VETVYIPDNDRATLCV 111 Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 SSQVGC + C FC TG Q NL+ +IL Q+ K Sbjct: 112 SSQVGCKMNCLFCQTGKQGFEGNLSVTDILNQIYSL-------------------PEREK 152 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238 ++NIV MG GEP+ N DNV ++ I + ++S +RIT+S+ G + R +E Sbjct: 153 LTNIVFMGQGEPMNNIDNVLRTTEIMTAEYAYAWSPKRITVSSVGVKNKLKRFLDESQCQ 212 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 +AIS+H+ + R L+P R ++ +I+ +Y S+ RR++FEY++ G NDS Sbjct: 213 VAISMHSPLEEQRKELMPAERAMSIKEVINLLHNY-DFSHQRRLSFEYIVFGGKNDSLEH 271 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A +I ++KG+ ++NLI F+ P SD + F + + R G + IR RG DI Sbjct: 272 AKAIINLVKGLECRVNLIRFHQIPNVPLKGSDISTMEHFRDYLTRHGVFTTIRASRGQDI 331 Query: 359 LAACGQLKSLSKR 371 AACG L + K+ Sbjct: 332 FAACGLLSTAKKK 344 >gi|303272039|ref|XP_003055381.1| predicted protein [Micromonas pusilla CCMP1545] gi|226463355|gb|EEH60633.1| predicted protein [Micromonas pusilla CCMP1545] Length = 430 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 148/402 (36%), Positives = 212/402 (52%), Gaps = 44/402 (10%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYV--RGIRDFQGMSDISQE 59 L K SL GM +LE L +IG R +Q++ W+Y + + D + M+D+S Sbjct: 49 RALAKVSLKGMRYADLERWLAEIGEKPS----RATQVFNWMYRPGKLVADVRDMADVSAA 104 Query: 60 VRHLLNQHFSI-IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE---KSRGT 115 R L ++ E+ D + S DGT+K G +E+V IP R T Sbjct: 105 FREKLASLATVDGDLEMRDVRTSADGTKKVTYALAN----GGGVVESVIIPSNVPGGRTT 160 Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175 +CVSSQ+GC++ C FC+T L RNLTA +I+ QV+ AR L + Sbjct: 161 VCVSSQLGCAMNCQFCFTAKMGLRRNLTAAQIVEQVVHARRL--------------AEAD 206 Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI 235 SN+V MGMGEPL N D V ++ + D GL FSK ++T+STSG VP I R E Sbjct: 207 DEASSNVVFMGMGEPLHNIDAVLAAVDVLLDDRGLGFSKNKVTVSTSGLVPEIERYLAES 266 Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR----ITFEYVMLKG 291 LA+SL+A ++++R+ ++PINRKY LE L+ A R + R + FEY+ML+G Sbjct: 267 QGSLAVSLNATTDEIRSWIMPINRKYNLERLLGALRANFPRRDGGRHQREVFFEYIMLEG 326 Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351 +NDS DA L+ I + +P K NLI FN G E+ CSD++ I+ F + + +G + IR Sbjct: 327 VNDSAEDADRLVAIARTLPCKFNLIYFNTHDGSEFRCSDRETILAFRDRVVAAGVTCTIR 386 Query: 352 TPRGLDILAACGQLKS------------LSKRIPKVPRQEMQ 381 RG + AACGQL S KR ++ EM+ Sbjct: 387 QSRGDEEAAACGQLGSPDAMEDWKPSPPRMKRPKRLREMEME 428 >gi|283953675|ref|ZP_06371206.1| putative radical SAM domain protein [Campylobacter jejuni subsp. jejuni 414] gi|283794716|gb|EFC33454.1| putative radical SAM domain protein [Campylobacter jejuni subsp. jejuni 414] Length = 356 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 137/378 (36%), Positives = 203/378 (53%), Gaps = 42/378 (11%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +++ + EEL E + + R QI++WIY + +F MS + +++R L Q Sbjct: 5 VNILDFLPEELGEKIKPM--------FRVKQIYQWIYQKYANNFSDMSSLPKDLRLELAQ 56 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------------R 113 +F + V + S D + K+L + +E+V +P K R Sbjct: 57 NFHFSPVKCVKNEQSKDRSIKYLFEL-----IDGLRVESVLLPMKEEKIDEKGKRISHAR 111 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 T+CVSSQVGC +CSFC T L RNL+A EI+ Q+L + Sbjct: 112 YTICVSSQVGCKSSCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNI------------- 158 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233 + NIV MGMGEPL N NV K++ I + + GL+ S RR T+STSG I +G+ Sbjct: 159 -PYERRVNIVYMGMGEPLDNLKNVSKAVKILAQNDGLAISPRRQTISTSGLAKQIKELGQ 217 Query: 234 E-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 +G++LAISLHAV+++LR L+PIN+ Y + ++DA R +P + +R+ FEY+++ GI Sbjct: 218 MNLGILLAISLHAVNDELRTELMPINKAYNIAAIMDAVREFPIV-QRKRVMFEYLLIDGI 276 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 ND A L+K+L GI AK+NLI FNP G Y ++ + F + + G + IR Sbjct: 277 NDKLEHAKELVKLLNGIKAKVNLILFNPHEGSIYKRPSLENAIKFQDLLSSKGVTCTIRE 336 Query: 353 PRGLDILAACGQLKSLSK 370 +GLDI AACGQLK K Sbjct: 337 SKGLDISAACGQLKERVK 354 >gi|169630257|ref|YP_001703906.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium abscessus ATCC 19977] gi|169242224|emb|CAM63252.1| Conserved hypothetical protein [Mycobacterium abscessus] Length = 373 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 128/377 (33%), Positives = 192/377 (50%), Gaps = 28/377 (7%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 + L M E+ + + ++G+P R QI Y R + D M+D+ R Sbjct: 17 RAMPPRHLADMSLEQSRDVVTELGLPA----FRAKQIANQYYGRLVGDPATMTDLPAGAR 72 Query: 62 HLLNQHFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119 + + E + +I+CD TRK L R +E+V + R TLC+S Sbjct: 73 GGVAEALFPRLLEPL-RQIACDAGDTRKTLWRLHD-----GSTVESVLMRYPDRNTLCIS 126 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 SQ GC + C FC TG L RNL+A EIL QV A + L D +P ++ Sbjct: 127 SQAGCGMACPFCATGQGGLTRNLSAAEILEQVRDAAASLRD---------GQLPGGPGRL 177 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IG 236 SNIV MGMGEPL N++ V L + G S+R +T+ST G P I R+ +E +G Sbjct: 178 SNIVFMGMGEPLANYNRVLTVLRKITAPPPEGFGISQRGVTVSTVGLAPAIRRLADEGLG 237 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 V LA+SLH ++LR+ LVP+N ++ + ++DA R+Y ++ R++ EY +++ +ND P Sbjct: 238 VTLAVSLHCPDDELRDTLVPVNTRWAISEVLDAARYYADVTGR-RVSIEYALIRDVNDQP 296 Query: 297 RDALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353 A L K L+ G +NLIP NP PG ++ S + F ++ G S +R Sbjct: 297 WRADMLGKKLRKALGQMVHVNLIPLNPTPGSQWDASPKPVEREFVRRVREQGVSCTVRDT 356 Query: 354 RGLDILAACGQLKSLSK 370 RG +I AACGQL + + Sbjct: 357 RGREIAAACGQLAASER 373 >gi|108760323|ref|YP_629532.1| radical SAM protein [Myxococcus xanthus DK 1622] gi|123374780|sp|Q1DCU1|RLMN1_MYXXD RecName: Full=Ribosomal RNA large subunit methyltransferase N 1; AltName: Full=23S rRNA m2A2503 methyltransferase 1 gi|108464203|gb|ABF89388.1| radical SAM enzyme, Cfr family [Myxococcus xanthus DK 1622] Length = 359 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 125/370 (33%), Positives = 189/370 (51%), Gaps = 26/370 (7%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L + R L L G Q+W +Y R F + + E+ +L +H Sbjct: 8 NLYDLTRPALGALLSGWGF----GPYHRDQLWTALYRRHATTFDELDGLKPELLRMLREH 63 Query: 68 FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + E S DG T K LLR IETV + K R T+C+S+Q GC++ Sbjct: 64 TRLGQLATHHESFSSDGFTHKLLLRL-----DDGQTIETVLMRFKGRATVCISTQAGCAM 118 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG L R+LT EI+ Q+L + + + G + N+V+MG Sbjct: 119 GCVFCATGQMGLSRHLTPGEIVGQILHVNRI--------------LRASGETLRNVVLMG 164 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHA 245 MGEPL N+++ ++ + D++GL+ R ITLST G VP I R+ EE + LA+SLH Sbjct: 165 MGEPLHNYEHTMSAVDVLVDALGLAMGPRFITLSTVGVVPGIRRLADEERPIHLAVSLHG 224 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ R LVP R++PL+ L+DACR+Y RI FE+ ++ G ND+ A L ++ Sbjct: 225 ATDAERAALVPAGRRWPLDELMDACRYYSEKRKR-RIFFEWTLISGRNDTAEHAHTLGQL 283 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G+ A +N+IP NP G + S + + F + + S +R RG+DI A CGQL Sbjct: 284 LRGMDAHVNVIPLNPTVGYDGGPSRPESVRAFQDVLATYDVPSTVRQRRGIDIDAGCGQL 343 Query: 366 KSLSKRIPKV 375 K+ +R + Sbjct: 344 KATVERRSRR 353 >gi|312139245|ref|YP_004006581.1| radical sam protein [Rhodococcus equi 103S] gi|311888584|emb|CBH47896.1| radical SAM protein [Rhodococcus equi 103S] Length = 369 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 123/374 (32%), Positives = 192/374 (51%), Gaps = 28/374 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + L + +E +EA+ ++G+P R Q+ + Y R D M+D+ +R Sbjct: 16 MPPRHLADLDADERKEAVKELGLPG----FRADQLARQYYGRLEADADKMTDLPAGMREK 71 Query: 64 LNQHFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 + ++V + ++CD TRK L + + +E+V + R TLC+SSQ Sbjct: 72 VGAALFPRLLDVV-KHVACDAGQTRKTLWKANDGTL-----LESVLMRYPDRATLCISSQ 125 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC + C FC TG L RNL+ EI+ QV A + L D + ++SN Sbjct: 126 AGCGMACPFCATGQGGLDRNLSTAEIVDQVRAAAAALRD---------GEVEGGPGRLSN 176 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVG-EEIGVM 238 IV MGMGEPL N+ V ++ + GL S+R +T+ST G P I ++ EE+ V Sbjct: 177 IVFMGMGEPLANYKRVVAAVRRITSPSPDGLGISQRAVTVSTVGLAPAIRKLADEEMSVR 236 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLH ++LR+ LVP+N ++ + ++DA R+Y S R++ EY +++ +ND P Sbjct: 237 LAVSLHTPDDELRDTLVPVNNRWSVAEVLDAARYYADKSGR-RVSIEYALIRDVNDQPWR 295 Query: 299 ALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 A L K L G +NLIP NP PG ++ S + F ++ G S +R RG Sbjct: 296 ADMLGKKLHKALGPLVHVNLIPLNPTPGSKWDASPKPVEREFVRRVQAQGVSCTVRDTRG 355 Query: 356 LDILAACGQLKSLS 369 +I AACGQL + + Sbjct: 356 QEIAAACGQLAAEN 369 >gi|18406673|ref|NP_564755.1| radical SAM domain-containing protein [Arabidopsis thaliana] gi|15451230|gb|AAK96886.1| Unknown protein [Arabidopsis thaliana] gi|20148295|gb|AAM10038.1| unknown protein [Arabidopsis thaliana] gi|332195547|gb|AEE33668.1| radical SAM domain-containing protein [Arabidopsis thaliana] Length = 458 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 141/380 (37%), Positives = 212/380 (55%), Gaps = 29/380 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIR--DFQGMSDISQEVRH 62 +K L GM L+E + G M +WK +Y I + + ++++++ Sbjct: 93 QKVVLKGMTYASLQEWVQSHGFRPGQALM----LWKRLYKDNIWANNVDELEGLNKDLKR 148 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQ 121 ++++H D + + DGTRK L + IETV IP ++ R T+CVSSQ Sbjct: 149 MISEHAEFGALSFKDIRSASDGTRKILFTLDDGLV-----IETVVIPCDRGRTTVCVSSQ 203 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC++ C FCYTG L RNLT EI+ Q + AR LL G I+N Sbjct: 204 VGCAMNCQFCYTGRMGLKRNLTTAEIVEQAVYARRLLSHEVGS--------------ITN 249 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 +V MGMGEP N DNV K+ +I D GL FS R++T+STSG VP + R E LA+ Sbjct: 250 VVFMGMGEPFHNIDNVIKAANIMVDENGLHFSPRKVTVSTSGLVPQLKRFLRESNCALAV 309 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SL+A ++++RN ++PINRKY L +L++ R + ++ FEYVML G+NDS DA Sbjct: 310 SLNATTDEVRNWIMPINRKYKLSLLLETLREGLSSRHKYKVLFEYVMLAGVNDSMDDARR 369 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L+++++GIP KINLI FNP G +++ +++ ++ F + G + +R RG D +AA Sbjct: 370 LVELVQGIPCKINLIQFNPHSGSQFIQTEEDKMIKFRNVLAEGGCTVLMRFSRGNDQMAA 429 Query: 362 CGQL---KSLSKRIPKVPRQ 378 CGQL ++ + +VP Q Sbjct: 430 CGQLGMIGAVQAPVMRVPEQ 449 >gi|291514720|emb|CBK63930.1| 23S rRNA m(2)A-2503 methyltransferase [Alistipes shahii WAL 8301] Length = 342 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 133/364 (36%), Positives = 189/364 (51%), Gaps = 29/364 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ESL G ++L ++G+P R QI +W+YVR D M+DI+ R L + Sbjct: 5 ESLYGKTPDQLAALCGELGMP----RFAARQIARWLYVRHTEDPLRMTDIAAAHRQRLAE 60 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 FS S DGT+K+L R +E+ YIP+ R TLCVSSQ GC + Sbjct: 61 WFSPALSAPERVTESADGTKKYLFRTL-----EGHYVESAYIPDGERATLCVSSQAGCRM 115 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG Q L ++LTA EIL Q + K++N+V MG Sbjct: 116 GCRFCATGRQGLQQSLTAAEILNQAVSLPERD-------------------KLTNLVFMG 156 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N D V ++L I + G +S RITLST+G VP + R + V LA+SLH Sbjct: 157 MGEPLDNTDEVLRALEIITAEWGFGWSPTRITLSTAGVVPELRRFLDATKVHLAVSLHNP 216 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ R ++P+ R +P+ + R Y ++ RR++FEY+++ G+NDSPR L ++L Sbjct: 217 FHEERMEIMPVERAWPIAEVAAILREY-DFTHQRRVSFEYIVMSGLNDSPRHIRELTRLL 275 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 GI +INLI F+ P Y + +V F + + G + IR RG DI AACG L Sbjct: 276 NGIKCRINLIRFHRIPDSPYFSPGDEAMVRFRDALTARGIQTTIRASRGEDIQAACGLLS 335 Query: 367 SLSK 370 + K Sbjct: 336 TRLK 339 >gi|313886711|ref|ZP_07820421.1| 23S rRNA m2A2503 methyltransferase [Porphyromonas asaccharolytica PR426713P-I] gi|312923873|gb|EFR34672.1| 23S rRNA m2A2503 methyltransferase [Porphyromonas asaccharolytica PR426713P-I] Length = 341 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 126/363 (34%), Positives = 187/363 (51%), Gaps = 30/363 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 ++G +L E + +G+P + QI W+Y + + + M+++S++ R LL H+ Sbjct: 7 ILGKTPTQLTELAVGLGLP----KYTGQQIADWLYQKHVSTWDEMTNLSKKARALLASHY 62 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 I ++ S DGT K+L G IETV IPE R TLCVSSQ GC + C Sbjct: 63 EIGRAAPHLQQTSRDGTVKYLF------AAGGGFIETVMIPEGDRATLCVSSQRGCKMNC 116 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG Q NL+A EIL Q+L + +++NIV MGMG Sbjct: 117 LFCMTGKQGFGANLSASEILNQILSVPEV-------------------NELTNIVFMGMG 157 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN 248 EP+ N D + + + +D GL+ S +RIT+ST G P + R EE LAISLH Sbjct: 158 EPMDNIDTLLQVIRCLTDPQGLAMSPKRITVSTIGLRPGLERFLEECTCHLAISLHNPLP 217 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 + R ++P+ R PL + RHY S RR+TFEY++ G+ND+PR L ++L Sbjct: 218 EERLSIMPVERAMPLADTVALLRHY-DWSRQRRLTFEYIVFSGLNDTPRHLAALKRLLAQ 276 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 + +NLI ++ P + SD + + + +G + IRT RG DI AACG L + Sbjct: 277 LDCHVNLIRYHRIPHIDLPSSDMTRMEWLRDRLCEAGIPTTIRTSRGEDISAACGMLSTQ 336 Query: 369 SKR 371 ++ Sbjct: 337 EQQ 339 >gi|296268984|ref|YP_003651616.1| radical SAM enzyme, Cfr family [Thermobispora bispora DSM 43833] gi|296091771|gb|ADG87723.1| radical SAM enzyme, Cfr family [Thermobispora bispora DSM 43833] Length = 388 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 122/374 (32%), Positives = 187/374 (50%), Gaps = 25/374 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + E +A+ ++G R Q+ + + R + M+D+ R L Sbjct: 32 RHLADLTMAERRDAVAELG----ERPFRADQLSRHYFGRLTASPEQMTDLPGGSRDRLVS 87 Query: 67 HFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 V +++CDG TRK L R + +E+V + R T+CVSSQ GC Sbjct: 88 ALLPPLLTPV-RELACDGGTTRKTLWRLFDGAL-----VESVLMRYPDRTTICVSSQAGC 141 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EI+ QV+ G + +P +ISN+V Sbjct: 142 GMNCPFCATGQAGLTRNLSTAEIVEQVVA---------GARSLAKGEVPGGPGRISNVVF 192 Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 MGMGEP+ N+ V ++ + GL S R IT+ST G VP I R+ +E + V LA+ Sbjct: 193 MGMGEPMANYKAVVAAIRRLTSPVPEGLGISARGITVSTVGLVPAIERLAQEGLPVTLAV 252 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++LR+ LVPIN ++ + ++DA +Y ++ R++ EY +++ IND A Sbjct: 253 SLHAPDDELRDTLVPINTRWKVAEVLDAAWNYAAVTKR-RVSIEYALIRDINDQEWRADL 311 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++L+G A +NLIP NP PG + S +D F ++ G +R RG +I A Sbjct: 312 LGRLLQGRLAHVNLIPLNPTPGSPWTASRPRDERAFVRRLESYGIPVTVRDTRGREIDGA 371 Query: 362 CGQLKSLSKRIPKV 375 CGQL + + K Sbjct: 372 CGQLAARDREDRKA 385 >gi|229817667|ref|ZP_04447949.1| hypothetical protein BIFANG_02938 [Bifidobacterium angulatum DSM 20098] gi|229785456|gb|EEP21570.1| hypothetical protein BIFANG_02938 [Bifidobacterium angulatum DSM 20098] Length = 395 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 123/368 (33%), Positives = 184/368 (50%), Gaps = 26/368 (7%) Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69 + M +E ++G+P + R Q+ Y + +D R F Sbjct: 47 VDMSEDERIAKAKELGLP----KFRVKQLANHYYGHFDVNAAAFTDFPASKRDEAASVFF 102 Query: 70 IIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 V +++ GT K L R IE+V + +R TLC+SSQVGC + C Sbjct: 103 PELITEVTRQVADKGTTIKTLWRLFD-----GSHIESVLMRYPTRSTLCISSQVGCGMGC 157 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG L RN++A EIL QV +A ++ D + ++SNIV MGMG Sbjct: 158 PFCATGQLGLTRNMSAGEILEQVRVAARMMQD---------GEVAGGPGRLSNIVFMGMG 208 Query: 189 EPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 EP+ N+ +V ++ S G S R IT+ST G VP I ++ EE I V LA+SLHA Sbjct: 209 EPMGNYRSVLSAVRQISALPPQGFGISARNITVSTVGVVPGIRKLTEEGIPVRLAVSLHA 268 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 S++LR+ LVP+N+++ ++DA Y L+ RR++ EY +++GIND A L K Sbjct: 269 PSDELRDELVPMNKRFNTTAVLDAAHDYW-LATKRRVSIEYALMRGINDQAEHARLLAKR 327 Query: 306 LK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 L A +N IP NP G ++ S +D F + + +G ++ +R RG DI AC Sbjct: 328 LNHYGDDWAHVNPIPLNPIEGSKWTASKPEDEKRFLDILHAAGITATLRDTRGQDIDGAC 387 Query: 363 GQLKSLSK 370 GQL + + Sbjct: 388 GQLAAKER 395 >gi|94984740|ref|YP_604104.1| hypothetical protein Dgeo_0633 [Deinococcus geothermalis DSM 11300] gi|123079957|sp|Q1J0P9|RLMN_DEIGD RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|94555021|gb|ABF44935.1| 23S rRNA m(2)A-2503 methyltransferase [Deinococcus geothermalis DSM 11300] Length = 344 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 118/336 (35%), Positives = 175/336 (52%), Gaps = 22/336 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +W++V+G+ F+ M+++ + R L F + ++ S DG+ K+L Sbjct: 17 FRQRQLLEWVFVQGVGTFEAMTNLPAQARADLASRFRLNPFREIETVRSADGSVKYLFTL 76 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 ++E VY+P R T+CVS+ VGC C+FC TG RNLT EI+ QVL Sbjct: 77 QD-----GRQMEAVYMPYLDRKTICVSTMVGCPAKCAFCATGAMGFGRNLTPGEIVGQVL 131 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 G P R++ N+V MGMGEPL N++N ++ I L Sbjct: 132 AVAGGEGLAP--------------RELRNLVFMGMGEPLLNYENTMQAARILLHPQALGM 177 Query: 213 SKRRITLSTSGFVPNIARVG--EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 SKRR+TLST G I R+ +++G+ LAISLHA R ++P + + ++ A Sbjct: 178 SKRRVTLSTVGLPKGIRRLAAEDDLGIKLAISLHAPDEATRQRIIPTGHRNSIAEIMAAA 237 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 R Y ++ R+TFEY ML+GIND A L +L+G+ + +NLIP NPW G + S Sbjct: 238 REYQAVTGR-RVTFEYSMLRGINDHLWQAEELADLLRGLVSHVNLIPMNPWDGSGFESST 296 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 ++ I F + + G +R RG D AACGQL Sbjct: 297 EEQIQAFYDVLAARGVDVSVRRSRGKDAGAACGQLA 332 >gi|150021379|ref|YP_001306733.1| ribosomal RNA large subunit methyltransferase N [Thermosipho melanesiensis BI429] gi|205829916|sp|A6LN47|RLMN_THEM4 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|149793900|gb|ABR31348.1| radical SAM enzyme, Cfr family [Thermosipho melanesiensis BI429] Length = 340 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 129/367 (35%), Positives = 206/367 (56%), Gaps = 30/367 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++++ + EEL +IG+ + R Q+ WIY + + +F+ M+++S+E R LL++ Sbjct: 2 KNILDLKYEELVNEFQRIGLE----KYRVDQVLNWIYKKKVFEFEKMTNLSKEHRKLLSE 57 Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F I P+++D +IS D T K+L IE+V + R T C+S+QVGC Sbjct: 58 KFFIDLPKLLDMQISKIDKTTKFLWELRD-----GNTIESVALFHSGRVTACISTQVGCP 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG VRNLT EI+ Q+L + K+ N+V M Sbjct: 113 VKCEFCATGQSGFVRNLTVGEIVSQILAIE-----------------LNRKIKVGNVVYM 155 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 GMGEPL NF+NV S+ + +D L+ RRIT+ST G I + E + V LA+SLH Sbjct: 156 GMGEPLLNFENVIDSIKMLNDKKMLNIGIRRITVSTVGIPEKIIALAESGLNVKLALSLH 215 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV++ R+ ++P+N+KY +E LI + R Y ++ R+T EY++++ ND P DA+ L++ Sbjct: 216 AVTDYKRDQIIPLNKKYSVEELIYSLRKYQEIT-GNRVTIEYILIREFNDYPEDAIRLVE 274 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L+G+ +NLIP NP ++ ++ + F E ++++G IR +G DI AACGQ Sbjct: 275 LLRGLSVYVNLIPINPV-NPKFHRPNRWALERFKEILEKNGIECEIRKEKGTDIDAACGQ 333 Query: 365 LKSLSKR 371 L+ R Sbjct: 334 LRRRKLR 340 >gi|228470999|ref|ZP_04055844.1| radical SAM enzyme, Cfr family [Porphyromonas uenonis 60-3] gi|228307396|gb|EEK16410.1| radical SAM enzyme, Cfr family [Porphyromonas uenonis 60-3] Length = 341 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 124/363 (34%), Positives = 188/363 (51%), Gaps = 30/363 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 ++G +L E + +G+P + QI W+Y + + + M+++S++ R LL H+ Sbjct: 7 ILGKTPAQLTELAVGLGLP----KYTGRQIADWLYQKHVSSWDEMTNLSKKARALLASHY 62 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 I ++ S DGT K+L G +ETV IPE R TLCVSSQ GC + C Sbjct: 63 EIGRAAPHLQQTSRDGTVKYLF------AAGGGFVETVMIPEGDRATLCVSSQRGCKMNC 116 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG Q NL+ EIL Q+L + +++NIV MGMG Sbjct: 117 LFCMTGKQGFGANLSTSEILNQILSVPEV-------------------NELTNIVFMGMG 157 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN 248 EP+ N D + + ++ +D GL+ S +RIT+ST G P + R EE LAISLH + Sbjct: 158 EPMDNIDTLLQVITCLTDPQGLAMSPKRITVSTIGLRPGLERFLEECTCHLAISLHNPLS 217 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 + R ++P+ R PL + RHY S RR+TFEY++ G+ND+PR L ++L Sbjct: 218 EERLSIMPVERAMPLADTVALLRHY-DWSRQRRLTFEYIVFSGLNDTPRHLAALKRLLAQ 276 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 + +NLI ++ P + SD + + + +G + IRT RG DI AACG L + Sbjct: 277 LDCHVNLIRYHRIPHIDLPSSDMTRMEWLRDWLCEAGIPTTIRTSRGEDISAACGMLSTQ 336 Query: 369 SKR 371 ++ Sbjct: 337 EQQ 339 >gi|157736328|ref|YP_001489011.1| hypothetical protein Abu_0057 [Arcobacter butzleri RM4018] gi|205829660|sp|A8EQW8|RLMN_ARCB4 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|157698182|gb|ABV66342.1| conserved hypothetical protein, radical SAM enzyme, Cfr family [Arcobacter butzleri RM4018] Length = 360 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 131/372 (35%), Positives = 200/372 (53%), Gaps = 32/372 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 S+ +EL+E L R Q++ W+Y + + M ++ +E+ L + Sbjct: 7 PSIYDYTLDELKEILK--------PSFRAKQVYNWLYKKYASSYDEMKNLPKELVEDLKE 58 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEI--------ETVYIPEKSRGTLCV 118 ++ I +IV ++ S DG+ K+L + V + E I + T+C+ Sbjct: 59 NYPIDIMQIVKKEQSRDGSIKYLFKLRDNHTVEAVLLLMKDKKIDEDGQIVRSEKYTVCI 118 Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 SSQVGC + CSFC T VRNLT E + Q++ + K Sbjct: 119 SSQVGCKVGCSFCLTAKGGFVRNLTVGEYIAQIVNIKRDNDI--------------AENK 164 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGV 237 NIV MGMGEPL NFDN K++ I S+ GL+ S+RR T+STSG I ++GE ++ + Sbjct: 165 ALNIVYMGMGEPLDNFDNFTKAVEIFSELDGLAISRRRQTVSTSGIATKIKKLGEKDLQI 224 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 LAISLHAV ++LR+ L+P+N+ Y + +I A + +P + +++ FEY+++K NDS Sbjct: 225 QLAISLHAVDDELRSELIPMNKAYNIASIIQAVKAFP-VDTRKKVMFEYLVIKDKNDSIE 283 Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 A L+ +L GI AK+NLI FNP+PG Y +KD++ F + + + G IR +GLD Sbjct: 284 AAKKLVSLLNGIQAKVNLIYFNPYPGTSYQRPQEKDMLKFKDFLNQKGVICTIRESKGLD 343 Query: 358 ILAACGQLKSLS 369 I AACGQLK Sbjct: 344 ISAACGQLKEKE 355 >gi|330813248|ref|YP_004357487.1| ribosomal RNA large subunit methyltransferase N [Candidatus Pelagibacter sp. IMCC9063] gi|327486343|gb|AEA80748.1| ribosomal RNA large subunit methyltransferase N [Candidatus Pelagibacter sp. IMCC9063] Length = 356 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 160/376 (42%), Positives = 238/376 (63%), Gaps = 22/376 (5%) Query: 1 MNFLKKESLIGMMREELEEALLKI-GIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59 MNF + + +L + + + ++ MRT+QIWK++Y +G+R+ S+IS E Sbjct: 1 MNF---SNFYDLSYSDLSDFISSNFSLEKKKTSMRTNQIWKFVYKKGLRETSKFSNISSE 57 Query: 60 VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119 +++ + + F+ I ++KIS DGT KWLL+ + +ETV+IP RGTLCVS Sbjct: 58 LKYNIEKSFNFNRTNIAEKKISKDGTIKWLLKLSDNNL-----VETVFIPSGKRGTLCVS 112 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 SQVGC+L C FC+TGTQ +V+NLT EI+ Q+L+A+ L D+ +KI Sbjct: 113 SQVGCTLNCKFCHTGTQLMVKNLTTHEIINQILVAKDELNDWGSQ------------KKI 160 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 +NIV MGMGEP N+DNVKKS+SI + GL +S ++IT+ST+G I + +EIG L Sbjct: 161 TNIVYMGMGEPFYNYDNVKKSISILRERNGLDYSAKKITVSTAGISNEIMKAADEIGTYL 220 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA +++LR ++PIN+K+ ++ LI++C +Y + N +I EYV+LK IND+ A Sbjct: 221 ALSLHAPTDELREKIMPINKKFKIKDLIESCSYYSKI-NKEKIFLEYVLLKDINDTDSCA 279 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L+K++ P+K+NLI FN WPG Y SD + + F E IK+SG+ +R RG DIL Sbjct: 280 QQLVKLMSKFPSKLNLIEFNAWPGVGYEPSDSETVQKFYEKIKKSGHIVTLRKSRGEDIL 339 Query: 360 AACGQLKSLSKRIPKV 375 ACGQLK+ S++ K Sbjct: 340 GACGQLKTDSEKKRKS 355 >gi|325478666|gb|EGC81777.1| 23S rRNA m2A2503 methyltransferase [Anaerococcus prevotii ACS-065-V-Col13] Length = 341 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 126/368 (34%), Positives = 200/368 (54%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 KE++ +ELEE + G + R Q+++ I+V I DF M+D+S+++R L+ Sbjct: 2 KENINDKSIKELEEIFEENGY----KKFRAKQVYRQIHVNKINDFSKMTDLSKDMREALD 57 Query: 66 QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + + ++ E +S D T+K+L I IE+VY+ ++R T+C+SSQVGC Sbjct: 58 KKYKFSSLKLRREFVSKIDSTKKYLFELEDGNI-----IESVYMEYENRKTICISSQVGC 112 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC + LVRN+TA E++ +V + GD I+NIV+ Sbjct: 113 RMGCKFCASTKNGLVRNMTAAELIEEVYELERINGD------------------INNIVI 154 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEPL N+DN+KK + I +D G + S R ITLSTSG P I ++ + + + LA+SL Sbjct: 155 MGIGEPLDNYDNIKKFIEIITDEKGRNLSHRSITLSTSGLAPMIIKLADSGLDINLALSL 214 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H + R +P++ KY + L+ A +Y + R++FEYV++ G+N+ D NL+ Sbjct: 215 HYADDKKRRQFMPVSNKYSIRELMKATDYYLDKTKR-RVSFEYVVIDGVNNLDEDVDNLV 273 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LKG INLIP NP Y + F + + ++ IR G DI A+CG Sbjct: 274 RLLKGKNVHINLIPLNPIEEFSYNKPKNTALKEFRDKLVSKKLNATIRRSMGSDIDASCG 333 Query: 364 QLKSLSKR 371 QL++ R Sbjct: 334 QLRNNYAR 341 >gi|237721458|ref|ZP_04551939.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229449254|gb|EEO55045.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 344 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 129/367 (35%), Positives = 197/367 (53%), Gaps = 29/367 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K L+GM EL+ ++ +P QI W+Y + + M+++S + R L Sbjct: 1 MSKYPLLGMTLVELQSLTKRLDMPG----FAAKQIASWLYEKKVASIDDMTNLSLKHREL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L Q++ + VDE S DGT K+L + +G +E+VYIP+ R TLCVSSQVG Sbjct: 57 LKQNYEVGAEAPVDEMRSVDGTVKYLYK-----VGENHFVESVYIPDDDRATLCVSSQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG Q NLTA +I+ Q+ K++N+V Sbjct: 112 CKMNCKFCMTGKQGYTANLTASQIINQI-------------------HSLPERDKLTNVV 152 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MMGMGEPL N D V K+L + + + G ++S +RITLST G + R EE LAISL Sbjct: 153 MMGMGEPLDNLDEVLKALELLTATYGYAWSPKRITLSTVGLRKGLQRFIEENDCHLAISL 212 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ R L+P + + + +++ ++Y S RR++FEY++ KG+NDS A L+ Sbjct: 213 HSPLTVQRAELMPAEKAFSITEMVELLKNY-DFSKQRRLSFEYIVFKGLNDSQVYAKELL 271 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+L+G+ ++NLI F+ PG + +D + F + + G + IR+ RG DI AACG Sbjct: 272 KLLRGLDCRVNLIRFHAIPGVDLEGADMDTMTRFRDYLTSHGLFTTIRSSRGEDIFAACG 331 Query: 364 QLKSLSK 370 L + + Sbjct: 332 MLSTAKQ 338 >gi|225156281|ref|ZP_03724759.1| radical SAM enzyme, Cfr family [Opitutaceae bacterium TAV2] gi|224803013|gb|EEG21258.1| radical SAM enzyme, Cfr family [Opitutaceae bacterium TAV2] Length = 367 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 138/371 (37%), Positives = 192/371 (51%), Gaps = 16/371 (4%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + R +L + G+ H +++W ++Y+ D + MSD+ +R L Sbjct: 6 IHLHDLPRVDLTALVASWGLSPVH----AARLWAYLYLEDTDDIRAMSDLPARMRDRLLA 61 Query: 67 HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 S + E S DG TRK+LL EIETV + K R T CVSSQVGC+ Sbjct: 62 ETSAARLPVACETHSSDGFTRKYLLALSD-----GREIETVLMRYKGRVTACVSSQVGCA 116 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLA----RSLLGDFPGCEDIEGMVIPSVGRKISN 181 + C FC TG R+LTA EI+ Q L R D P + ++ N Sbjct: 117 MGCVFCATGQMGFTRHLTAGEIVAQALHVDRVLRRTADDAPALAEPGNASPHHRHERLRN 176 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLA 240 IV+MGMGEPL N+D V +++ I D GL+ R+ITLST G VP I R+ +E V LA Sbjct: 177 IVLMGMGEPLHNYDAVMRAIDILRDGNGLALGARKITLSTVGVVPGIIRLADEHNPVHLA 236 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLH + R LVP R +PL+ L++ACR+Y RRI FE+ +++G ND P A Sbjct: 237 VSLHGATQAERAALVPAARAWPLDALMEACRYYVQ-KQQRRIFFEWTLIEGKNDGPDQAR 295 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 + ++L+G+ A++NLIP NP G F + G S IR RG+DI A Sbjct: 296 AVGRLLRGMQAQVNLIPLNPTSGYAGEPGRADAAKRFQAVLAEHGLPSTIRQRRGIDIGA 355 Query: 361 ACGQLKSLSKR 371 CGQL + S+R Sbjct: 356 GCGQLATESRR 366 >gi|3249072|gb|AAC24056.1| Contains similarity to hypothetical 43.1 KD protein in NDK-GCPE intergenic region gb|493519 from E. coli sequence gb|U02965 [Arabidopsis thaliana] Length = 454 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 141/380 (37%), Positives = 212/380 (55%), Gaps = 29/380 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIR--DFQGMSDISQEVRH 62 +K L GM L+E + G M +WK +Y I + + ++++++ Sbjct: 89 QKVVLKGMTYASLQEWVQSHGFRPGQALM----LWKRLYKDNIWANNVDELEGLNKDLKR 144 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQ 121 ++++H D + + DGTRK L + IETV IP ++ R T+CVSSQ Sbjct: 145 MISEHAEFGALSFKDIRSASDGTRKILFTLDDGLV-----IETVVIPCDRGRTTVCVSSQ 199 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC++ C FCYTG L RNLT EI+ Q + AR LL G I+N Sbjct: 200 VGCAMNCQFCYTGRMGLKRNLTTAEIVEQAVYARRLLSHEVGS--------------ITN 245 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 +V MGMGEP N DNV K+ +I D GL FS R++T+STSG VP + R E LA+ Sbjct: 246 VVFMGMGEPFHNIDNVIKAANIMVDENGLHFSPRKVTVSTSGLVPQLKRFLRESNCALAV 305 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SL+A ++++RN ++PINRKY L +L++ R + ++ FEYVML G+NDS DA Sbjct: 306 SLNATTDEVRNWIMPINRKYKLSLLLETLREGLSSRHKYKVLFEYVMLAGVNDSMDDARR 365 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L+++++GIP KINLI FNP G +++ +++ ++ F + G + +R RG D +AA Sbjct: 366 LVELVQGIPCKINLIQFNPHSGSQFIQTEEDKMIKFRNVLAEGGCTVLMRFSRGNDQMAA 425 Query: 362 CGQL---KSLSKRIPKVPRQ 378 CGQL ++ + +VP Q Sbjct: 426 CGQLGMIGAVQAPVMRVPEQ 445 >gi|160903334|ref|YP_001568915.1| radical SAM protein [Petrotoga mobilis SJ95] gi|205829799|sp|A9BIC0|RLMN_PETMO RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|160360978|gb|ABX32592.1| radical SAM enzyme, Cfr family [Petrotoga mobilis SJ95] Length = 347 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 129/371 (34%), Positives = 204/371 (54%), Gaps = 31/371 (8%) Query: 4 LKKESLIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 ++ ++++ +L+ LL ++G+ + RT QI WIY + + DF+ M+++S++ R Sbjct: 1 MQTKNILDFEYSDLQSYLLNELGLE----KFRTDQICDWIYKKRVFDFESMTNLSKDDRQ 56 Query: 63 LLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L+ +F I P IV +++S DGT K+LL + +E V I SR C+S+Q Sbjct: 57 KLSDNFKISIPHIVKKEVSKIDGTTKYLLELEDKNT-----VEAVIIYYPSRTIACISTQ 111 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC L CSFC TG VRNL+ EI+ Q+L + N Sbjct: 112 VGCPLKCSFCSTGQSGYVRNLSTGEIIGQLLAMEK-----------------DKEMDVKN 154 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLA 240 +V MGMGEPL NF+NV +++ I + R IT+ST+G I VG+ L+ Sbjct: 155 VVYMGMGEPLLNFNNVVQTIEILNHPKMKKLGARHITISTAGIPQKIEEVGDLNKEFRLS 214 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA +N R+ ++PIN KYP+E +I +CR Y + R+TFEY+++KG NDS DAL Sbjct: 215 VSLHAPTNLQRDQIMPINHKYPVEQVIQSCRIYQKKTKK-RVTFEYILIKGFNDSKEDAL 273 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L+++ + +NLIP N P + ++ I F + + ++G + +R +G DI A Sbjct: 274 KLVELFGDLKVMVNLIPVNENP-AGFEKPSKRFIQAFLDTLVKNGIDAVVRAEKGSDISA 332 Query: 361 ACGQLKSLSKR 371 ACGQL++ + Sbjct: 333 ACGQLRTRELK 343 >gi|284032622|ref|YP_003382553.1| radical SAM enzyme, Cfr family [Kribbella flavida DSM 17836] gi|283811915|gb|ADB33754.1| radical SAM enzyme, Cfr family [Kribbella flavida DSM 17836] Length = 372 Score = 376 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 120/371 (32%), Positives = 181/371 (48%), Gaps = 27/371 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-N 65 L + EE A+ +G P R Q+ + R + D M+D+ R L Sbjct: 20 RHLADLSGEERRAAVTALGEPA----FRAKQLSNHYFSRLVSDPAEMTDLPAASRDKLVA 75 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + ++ D + TRK L + + +E+V + R T+CVSSQ GC Sbjct: 76 ELMPPLLTKVRDLECDNGQTRKSLWKLLDGSL-----VESVLMRYTDRTTMCVSSQAGCG 130 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG L RN+T EI+ QV+ G + I +++NIV M Sbjct: 131 MACPFCATGQAGLTRNMTTAEIVEQVV---------DGARALSRGEIAGGPGRVNNIVFM 181 Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242 GMGEP+ N+ V ++ +D GL S R IT+ST G VP I ++ E I V LA+S Sbjct: 182 GMGEPMANYKAVIGAVRRFTDPSPEGLGISARGITVSTVGLVPRINQLAGEGIPVTLALS 241 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA ++LR+ LVPIN ++ ++ ++DA Y + R++ EY M++ IND A L Sbjct: 242 LHAPDDELRDELVPINNRWKVDEVLDAAWGYAQQTKR-RVSIEYAMIRDINDHAWRADLL 300 Query: 303 IKILKGIP----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 + L +NLIP NP PG ++ SD D F ++ G + +R RG +I Sbjct: 301 AEKLAARGDWGWVHVNLIPLNPTPGSKWTASDPADEREFVRRLQAGGIPTTVRDTRGQEI 360 Query: 359 LAACGQLKSLS 369 ACGQL + + Sbjct: 361 DGACGQLAAAN 371 >gi|227497538|ref|ZP_03927766.1| possible Fe-S-cluster redox protein [Actinomyces urogenitalis DSM 15434] gi|226832992|gb|EEH65375.1| possible Fe-S-cluster redox protein [Actinomyces urogenitalis DSM 15434] Length = 392 Score = 376 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 127/383 (33%), Positives = 187/383 (48%), Gaps = 32/383 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + + L G+P R Q+ + + R RD Q M+D+ R L Sbjct: 32 RHLADLDLAGRKAVLKDAGLPA----FRADQLSRHYFTRFTRDAQDMTDLPASQREQLAA 87 Query: 67 HFSIIYPEIVDEKIS--CDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + P+++ E + DG T K L V +E+V + K R TLCVSSQ Sbjct: 88 E---LLPDLIHEVRALRADGGRTIKHLWELHD-----GVRVESVLMRYKDRTTLCVSSQA 139 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RNL+ EI+ QV A + E + ++SN+ Sbjct: 140 GCGMACPFCATGQMGLTRNLSTGEIIEQVRHAAQVS---------ERGDLTGGPARLSNV 190 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239 V MGMGEP+ N+ NV +L + G S R IT+ST G VP I ++ E + V L Sbjct: 191 VFMGMGEPMINYKNVVAALRRLTSPAPEGFGMSARGITVSTVGLVPLIRKLSTEGMPVTL 250 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA ++LR+ L+PIN K+ + L+DA Y + RR++ EY ++K +ND A Sbjct: 251 AVSLHAPDDELRDELIPINSKWKVGELLDAAYDYYS-TTGRRVSIEYALIKDMNDHAWRA 309 Query: 300 LNLIKIL--KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L L +G A +N IP NP PG + CS+ F + ++R+G ++ +R RG Sbjct: 310 QLLADELNARGRGWAHVNPIPLNPTPGSIWTCSEPDVQELFVDTLRRAGITTTVRDTRGS 369 Query: 357 DILAACGQLKSLSKRIPKVPRQE 379 DI ACGQL + + + Sbjct: 370 DIDGACGQLATEVLNQERARTRR 392 >gi|254304122|ref|ZP_04971480.1| hypothetical protein FNP_1792 [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324314|gb|EDK89564.1| hypothetical protein FNP_1792 [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 358 Score = 376 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 130/380 (34%), Positives = 201/380 (52%), Gaps = 34/380 (8%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN +K +++ + +EEL E L+ +G+ + +++ W++ + R F M+++S + Sbjct: 1 MNN-EKINILNLTQEELTELLVSLGL----KKFYGKEVFIWLHKKIARSFDEMTNLSLKD 55 Query: 61 RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS------R 113 R +L + I + ++ ++S D T K+L IETV + K R Sbjct: 56 REILKEKTYIPFFNLLKYQVSKIDKTEKFLFELEDGGT-----IETVLLRHKDSKNKEIR 110 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 TLCVSSQVGC + CSFC TG +RNL+ EIL QV + Sbjct: 111 NTLCVSSQVGCPVKCSFCATGQSGYMRNLSVSEILNQVYTVER--------------RLR 156 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VG 232 G ++N+V MGMGEPL N DN+ KSLSI S+ G++ SKR+IT+STSG V I + + Sbjct: 157 KKGETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGVNISKRKITISTSGVVSGIEKILL 216 Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 ++I + LA+SLH+ N+ R+ ++PIN+ +PLE L Y + R+TFEY+++ Sbjct: 217 DKIPIELAVSLHSAINEKRDKIIPINKNFPLEDLSAVLVEYQKQTKR-RVTFEYILIDNF 275 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIR 351 N S DA L + +NLIP+N G E+ K I F +K + +R Sbjct: 276 NISETDANALADFIHQFDHVVNLIPYNEVEGVEHTRPSVKKIDKFYNYLKNVRKVNVTLR 335 Query: 352 TPRGLDILAACGQLKSLSKR 371 +G DI ACGQL+ +K+ Sbjct: 336 QEKGSDIDGACGQLRQRNKK 355 >gi|325673450|ref|ZP_08153141.1| cfr family radical SAM enzyme [Rhodococcus equi ATCC 33707] gi|325555471|gb|EGD25142.1| cfr family radical SAM enzyme [Rhodococcus equi ATCC 33707] Length = 369 Score = 376 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 123/374 (32%), Positives = 192/374 (51%), Gaps = 28/374 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + L + +E +EA+ ++G+P R Q+ + Y R D M+D+ +R Sbjct: 16 MPPRHLADLDADERKEAVKELGLPG----FRADQLARQYYGRLEADADKMTDLPAGMREK 71 Query: 64 LNQHFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 + ++V + ++CD TRK L + + +E+V + R TLC+SSQ Sbjct: 72 VGAALFPRLLDVV-KHVACDAGQTRKTLWKANDGTL-----LESVLMRYPDRATLCISSQ 125 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC + C FC TG L RNL+ EI+ QV A + L D + ++SN Sbjct: 126 AGCGMACPFCATGQGGLDRNLSTAEIVDQVRAAAAALRD---------GEVEGGPGRLSN 176 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVG-EEIGVM 238 IV MGMGEPL N+ V ++ + GL S+R +T+ST G P I ++ EE+ V Sbjct: 177 IVFMGMGEPLANYKRVVAAVRRITSPSPDGLGISQRAVTVSTVGLAPAIRKLADEEMSVR 236 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLH ++LR+ LVP+N ++ + ++DA R+Y S R++ EY +++ +ND P Sbjct: 237 LAVSLHTPDDELRDTLVPVNNRWAVAEVLDAARYYADKSGR-RVSIEYALIRDVNDQPWR 295 Query: 299 ALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 A L K L G +NLIP NP PG ++ S + F ++ G S +R RG Sbjct: 296 ADMLGKKLHKALGPLVHVNLIPLNPTPGSKWDASPKPVEREFVRRVQAQGVSCTVRDTRG 355 Query: 356 LDILAACGQLKSLS 369 +I AACGQL + + Sbjct: 356 QEIAAACGQLAAEN 369 >gi|323344170|ref|ZP_08084396.1| cfr family radical SAM enzyme [Prevotella oralis ATCC 33269] gi|323094899|gb|EFZ37474.1| cfr family radical SAM enzyme [Prevotella oralis ATCC 33269] Length = 346 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 124/370 (33%), Positives = 192/370 (51%), Gaps = 29/370 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K L+GM EL+ ++ +P Q+ KW+Y + + M++IS+ R L Sbjct: 5 KIPLLGMTLSELKTVAKELEMPA----FTGGQMAKWLYRQHVASIDDMTNISKSNREKLK 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + +++ +DE+ S DGT K+L +ETVYIP++ R TLCVSSQVGC Sbjct: 61 KAYTVGCASPIDEQHSNDGTIKYLF-----PTEQGKYVETVYIPDEERATLCVSSQVGCK 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG Q NLTA +IL Q+ K++NIV M Sbjct: 116 MNCLFCQTGKQGYEGNLTATDILNQIYALPERD-------------------KLTNIVFM 156 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 G GEP+ N +NV ++ +I + ++S +RIT+S+ G + R EE +AISLH+ Sbjct: 157 GQGEPMDNLENVLRATNILTADYAYAWSPKRITVSSVGVRNKLKRFLEESDCHVAISLHS 216 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ R L+P P+ ++D R+Y S+ RR++FEY++ GIND+ A ++K+ Sbjct: 217 PIHEQRAGLMPAEGGMPIREIVDLLRNY-DFSHQRRLSFEYIVFGGINDTQTHAKEIVKL 275 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG+ +INLI F+ P +D + + F + + G + IR RG DI AACG L Sbjct: 276 LKGLDCRINLIRFHQIPNVPLRGADDRTMEAFRDYLTAHGLFTTIRASRGEDIFAACGLL 335 Query: 366 KSLSKRIPKV 375 + K + Sbjct: 336 STAKKHADEK 345 >gi|226227123|ref|YP_002761229.1| hypothetical protein GAU_1717 [Gemmatimonas aurantiaca T-27] gi|259491989|sp|C1A949|RLMN_GEMAT RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|226090314|dbj|BAH38759.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 360 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 134/383 (34%), Positives = 190/383 (49%), Gaps = 37/383 (9%) Query: 7 ESLIGMMREE----LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 L+ + L E + G P R +Q++ ++ R +R F M+++ + +R Sbjct: 5 PDLLDFDPDAALALLGEWMAARGEPA----YRAAQVFGRLWQRPVRSFDEMTELPKALRE 60 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L F I E+ + S DGT K+L R + IETV IP+ R T C+SSQ Sbjct: 61 GLAGSFRITALELTTRQKSMDGTEKFLFRMHDGQL-----IETVAIPDGDRLTFCISSQA 115 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L C+FC TG RNL EI QV R L +NI Sbjct: 116 GCALQCAFCATGAMGFQRNLHPSEIAGQVRELRMLTPSIVP----------------TNI 159 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI 241 V MGMGEPL N+ V +LS+ +D L R IT+ST G +P I + LAI Sbjct: 160 VFMGMGEPLMNWKAVSPTLSLLNDPRALGIGARHITISTVGVLPGIVALAARPEQFRLAI 219 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 S+HA S+ LR L+P+N KYPL +I A R + R+TFEYVML G+ND P A Sbjct: 220 SIHAPSDALRRTLMPVNTKYPLADVIAAAREFDR-----RVTFEYVMLGGVNDQPEHAAQ 274 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++ + A +NLIP +P + S I F++ I+ G + +R RGLDI AA Sbjct: 275 LAQLARDCRAFVNLIPLHPGGSMGFSPSTTPTINAFAKAIRARGVETAVRRSRGLDIAAA 334 Query: 362 CGQLKSL--SKRIPKVPRQEMQI 382 CGQL++ +R+P + ++ Sbjct: 335 CGQLRTERLGRRLPVAAQDHGEV 357 >gi|257451432|ref|ZP_05616731.1| florfenicol resistance protein [Fusobacterium sp. 3_1_5R] gi|257466897|ref|ZP_05631208.1| florfenicol resistance protein [Fusobacterium gonidiaformans ATCC 25563] gi|315918044|ref|ZP_07914284.1| radical SAM domain-containing protein [Fusobacterium gonidiaformans ATCC 25563] gi|317058012|ref|ZP_07922497.1| radical SAM domain-containing protein [Fusobacterium sp. 3_1_5R] gi|313683688|gb|EFS20523.1| radical SAM domain-containing protein [Fusobacterium sp. 3_1_5R] gi|313691919|gb|EFS28754.1| radical SAM domain-containing protein [Fusobacterium gonidiaformans ATCC 25563] Length = 349 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 129/372 (34%), Positives = 196/372 (52%), Gaps = 28/372 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K +L+ + ++EL E L+ G+ + +++ W++ + R+ Q M+++S + R + Sbjct: 1 MEKLNLLDLSKKELTEFLVAEGM----KKFYGKEVFVWLHKKFARNIQEMTNLSLQNREI 56 Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQ 121 L + I Y ++ ++S D T K+L + IETV + + R TLC+SSQ Sbjct: 57 LEEKTYIPYLNLLKHQVSKIDKTEKFLFQLED-----GNTIETVLLRHRDQRNTLCISSQ 111 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC + CSFC TG VRNL EIL QV + G K++N Sbjct: 112 VGCPVKCSFCATGQDGFVRNLRVSEILNQVYTVER--------------RLNKRGEKLTN 157 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLA 240 +V MGMGEPL N + + K+L I S G+ SKRRIT+STSG VP I R + E++ V LA Sbjct: 158 LVFMGMGEPLINIEALLKALEILSSEEGICISKRRITISTSGIVPAIERILMEKVPVELA 217 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLH+ N+ R+ ++PIN+ YPLE L Y + R+TFEY+++K N S DA Sbjct: 218 VSLHSAINEKRDQIIPINKAYPLEDLAAVLGEYQRQTKR-RLTFEYILIKDFNVSEGDAN 276 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLDIL 359 L +NLIP NP +K I F + +K + +R +G DI Sbjct: 277 ALADFAHQFDHVVNLIPCNPVADTGLERPSEKKIERFYDYLKNVRKVNVSLRQEKGTDID 336 Query: 360 AACGQLKSLSKR 371 ACGQL+ ++ Sbjct: 337 GACGQLRQNQRK 348 >gi|297837501|ref|XP_002886632.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297332473|gb|EFH62891.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp. lyrata] Length = 458 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 141/380 (37%), Positives = 212/380 (55%), Gaps = 29/380 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIR--DFQGMSDISQEVRH 62 +K L GM L+E + G M +WK +Y I + + ++++++ Sbjct: 93 QKVILKGMTYAALQEWVQSHGFRPGQALM----LWKRLYKDNIWANNVDELEGLNKDLKR 148 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQ 121 ++++H D + + DGTRK L + IETV IP ++ R T+CVSSQ Sbjct: 149 MISEHAEFGALSFKDIRSASDGTRKILFTLDDGLV-----IETVVIPCDRGRTTVCVSSQ 203 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC++ C FCYTG L RNLT EI+ Q + AR LL G I+N Sbjct: 204 VGCAMNCQFCYTGRMGLKRNLTTAEIVEQAVYARRLLSHEVGS--------------ITN 249 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 +V MGMGEP N DNV K+ +I D GL FS R++T+STSG VP + R E LA+ Sbjct: 250 VVFMGMGEPFHNIDNVIKAANIMVDENGLHFSPRKVTVSTSGLVPQLKRFLRESNCALAV 309 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SL+A ++++RN ++PINRKY L +L++ R + ++ FEYVML G+NDS DA Sbjct: 310 SLNATTDEVRNWIMPINRKYKLSLLLETLREGLSSKHKYKVLFEYVMLAGVNDSMDDARR 369 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L+++++GIP KINLI FNP G +++ +++ ++ F + G + +R RG D +AA Sbjct: 370 LVELVQGIPCKINLIQFNPHSGSQFIQTEEDKMIKFRNVLAEGGCTVLMRFSRGNDQMAA 429 Query: 362 CGQL---KSLSKRIPKVPRQ 378 CGQL ++ + +VP Q Sbjct: 430 CGQLGMIGAVQAPVMRVPEQ 449 >gi|295106390|emb|CBL03933.1| 23S rRNA m(2)A-2503 methyltransferase [Gordonibacter pamelaeae 7-10-1-b] Length = 349 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 116/366 (31%), Positives = 186/366 (50%), Gaps = 29/366 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + + L++ + +G P R Q+++W+Y+ + + M+++ Q +R L+ Sbjct: 9 KPIKTYSLNNLKQLMKDLGQPS----FRAKQLYEWLYLHHVGSYDEMTNLPQTLRVQLSA 64 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQVGCS 125 + + P ++D + S DGT K+++ + +ETV IP R T+C S+Q GC+ Sbjct: 65 DYPLFTPAVIDSQTSQDGTAKYVISYHD-----GARVETVAIPSSDGRLTVCCSTQAGCA 119 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC TG + RNL+A EI+ Q+L+A++ +G+ ++SN+V+M Sbjct: 120 MGCTFCATGKEGFTRNLSAGEIVDQILIAQTRMGE-----------------RVSNVVVM 162 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLH 244 G GEP N++ +L I +D L+ R ITLST G + I R+G E LA+SLH Sbjct: 163 GQGEPFLNYEQTLNALHILNDEKLLNIGARHITLSTCGILSGIDRLGTEPEQFTLAVSLH 222 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A R+ ++P Y L L Y +N R T EY M+ +ND+ D LI+ Sbjct: 223 AAIQRTRDKIMPGVANYGLGKLKTVLLKYIERTNR-RATLEYAMMNRVNDNEEDLKALIE 281 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 G+ +NLIP N E+ S + + + RSG + IR RG DI ACGQ Sbjct: 282 FCTGLLCHVNLIPLNEIEESEFSPSKAPTMNHWYLTLNRSGIETTIRHSRGSDIAGACGQ 341 Query: 365 LKSLSK 370 LK+ K Sbjct: 342 LKNAVK 347 >gi|294101228|ref|YP_003553086.1| radical SAM enzyme, Cfr family [Aminobacterium colombiense DSM 12261] gi|293616208|gb|ADE56362.1| radical SAM enzyme, Cfr family [Aminobacterium colombiense DSM 12261] Length = 347 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 130/366 (35%), Positives = 191/366 (52%), Gaps = 28/366 (7%) Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69 + M +E E + R RT QI +WIY + + + M+++ +++R L Sbjct: 8 LEMNYDEWLEFCTE---KLGLQRYRTDQICQWIYEKKVFNIYDMTNLGKDLREDLAYKIL 64 Query: 70 IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129 I+ P +V ++ S DGTRK+L + IE+V + + T C+SSQVGC L C+ Sbjct: 65 ILPPSLVKQETSKDGTRKFLWQLQD-----GQRIESVLLSHGNHNTACISSQVGCPLACA 119 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 FC TG VRNLT EI+ Q L G I+NIV MGMGE Sbjct: 120 FCATGKGGFVRNLTPGEIVGQFLAMEKAAGQ-----------------NITNIVFMGMGE 162 Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSN 248 PL N + + KS+ I + R +T+ST+G VP I + E EI V L++SLH ++ Sbjct: 163 PLLNQEALFKSIKILNHPKMRGLGARHMTISTAGIVPGIRALTELEIPVRLSVSLHGTND 222 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 LRN L+PIN++YPL LI+A R Y + R+T EYVM+ +ND+ A L ++ G Sbjct: 223 MLRNKLMPINQQYPLGSLIEALRDYQQKT-GDRVTIEYVMIDRVNDNTEQAYELAALMNG 281 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 + +NLIP+NP Y S Q+ I F + + IR +G DI AACGQL+ Sbjct: 282 LSIYVNLIPYNPVDAT-YRRSSQERIKAFGKILSELNIEYEIRREKGSDINAACGQLRRQ 340 Query: 369 SKRIPK 374 +++ + Sbjct: 341 NEKSSR 346 >gi|296329385|ref|ZP_06871885.1| cfr family radical SAM enzyme [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153505|gb|EFG94323.1| cfr family radical SAM enzyme [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 358 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 128/376 (34%), Positives = 199/376 (52%), Gaps = 33/376 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +++ + +EEL E L+ +G+ + +++ W++ + R F M+++S + R +L Sbjct: 4 EKINILNLTQEELTELLVSLGL----KKFYGKEVFIWLHKKITRSFDEMTNLSLKDREIL 59 Query: 65 NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLC 117 + I + ++ ++S D T K+L IETV + K R TLC Sbjct: 60 KEKTYIPFFNLLKYQVSKIDKTEKFLFELEDGGT-----IETVLLRHKDSKNKEIRNTLC 114 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 VSSQVGC + CSFC TG +RNL+ EIL Q+ + G Sbjct: 115 VSSQVGCPVKCSFCATGQSGYMRNLSVSEILNQIYTVER--------------RLRKKGE 160 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIG 236 ++N+V MGMGEPL N DN+ K+LSI S+ G++ SKR+IT+STSG V I + + ++I Sbjct: 161 NLNNLVFMGMGEPLLNIDNLSKALSIISNENGINISKRKITISTSGVVSGIEKILLDKIP 220 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 + LAISLH+ N+ R+ ++PIN+ +PLE L Y + RITFEY+++ N S Sbjct: 221 IELAISLHSAINEKRDKIIPINKNFPLEDLSAVLIEYQKQTKR-RITFEYILIDNFNISE 279 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRG 355 DA L + +NLIP+N G E+ K I F +K + +R +G Sbjct: 280 TDANALADFIHQFDHVVNLIPYNEVEGAEHTRPSVKKINKFYNYLKNVRKVNVTLRQEKG 339 Query: 356 LDILAACGQLKSLSKR 371 DI ACGQL+ +K+ Sbjct: 340 SDIDGACGQLRQRNKK 355 >gi|227549023|ref|ZP_03979072.1| possible Fe-S-cluster redox protein [Corynebacterium lipophiloflavum DSM 44291] gi|227078877|gb|EEI16840.1| possible Fe-S-cluster redox protein [Corynebacterium lipophiloflavum DSM 44291] Length = 367 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 116/374 (31%), Positives = 185/374 (49%), Gaps = 31/374 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + + + +EE EAL ++G+P + R QI + Y + D M+D+ + R L Sbjct: 16 MPPKHFADLSKEERIEALAELGLP----KFRADQIARHYYGKFQADPLTMTDLPESQRQL 71 Query: 64 LNQH-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + F + EI + T K L R + +E+V + R TLC+SSQ Sbjct: 72 VKDALFPTLLTEIRSLETDEGDTTKTLWRLHDGIL-----LESVLMRYPDRATLCISSQA 126 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RNL+ EI+ QV A + + G ++SNI Sbjct: 127 GCGMACPFCATGQGGLDRNLSTAEIVDQVRAAA--------------ARMHAEGSRLSNI 172 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239 V MGMGEPL N++ V ++ + G S+R +T+ST G P I ++ +E + L Sbjct: 173 VFMGMGEPLANYNRVVSAVRQITQPTPDGFGISQRNVTVSTVGLAPQIRKLADEGLSCTL 232 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH ++LR+ LVP+N ++ + +++A +Y + R++ EY +++ IND A Sbjct: 233 AVSLHTPDDELRDELVPMNNRFSVADVLEAASYYAEQTGR-RVSIEYALIRDINDHDFRA 291 Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L + L G +NLIP NP PG ++ S + F + G + +R +G Sbjct: 292 DMLGRKLHDALGSKVHVNLIPLNPTPGSKWDASPRARQDEFVRRVIAQGVTCTVRDTKGQ 351 Query: 357 DILAACGQLKSLSK 370 +I AACGQL + K Sbjct: 352 EIAAACGQLAAEEK 365 >gi|322380339|ref|ZP_08054550.1| Fe-S cluster redox enzyme [Helicobacter suis HS5] gi|321147246|gb|EFX41935.1| Fe-S cluster redox enzyme [Helicobacter suis HS5] Length = 383 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 129/378 (34%), Positives = 199/378 (52%), Gaps = 38/378 (10%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +SL + EEL+ QI+ W+Y R F M ++ + ++ L + Sbjct: 25 QSLYNLTFEELQTYAADH----HFKPFVAKQIFAWLYQRYATSFDQMHNLPKSLKTTLQR 80 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR------------- 113 F I +++ ++ S D + K L + E+V++ K + Sbjct: 81 DFCIQNLKLLVKECSQDKSEKCLFATHDQ-----HSFESVFMVMKEKQIGDKGQILAQEK 135 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 T C+SSQ+GC + C FC T VRNL A EI+ QV+ + + P Sbjct: 136 LTFCLSSQIGCKVGCVFCATAKGGFVRNLKAGEIVEQVVALKRMHSLEPTKG-------- 187 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233 N+V MGMGEPL NF+ V +SL I S GL+ S RRITLSTSG VP + +G Sbjct: 188 ------INLVFMGMGEPLHNFEQVVRSLKILSHPHGLNISPRRITLSTSGVVPMMDILGA 241 Query: 234 -EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 +GV LAISLHAV+++LR+ L+PIN+ Y ++ LI A R +P + +R+ FEY+++K Sbjct: 242 LNLGVQLAISLHAVNDELRSKLMPINKTYNIQELIKAARRFP-IDARKRLMFEYLVIKDY 300 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 ND A L+++L G+ +KINLIP+NP ++ D + + F++ + + G +R Sbjct: 301 NDGLEHAKALLRLLNGLRSKINLIPYNPTTHSKFERPDLEKVKQFADFLNQRGLLCTMRL 360 Query: 353 PRGLDILAACGQLKSLSK 370 +GLDI AACGQL+ ++ Sbjct: 361 SKGLDISAACGQLREKTR 378 >gi|251791823|ref|YP_003006543.1| Cfr family radical SAM protein [Aggregatibacter aphrophilus NJ8700] gi|247533210|gb|ACS96456.1| radical SAM enzyme, Cfr family [Aggregatibacter aphrophilus NJ8700] Length = 311 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 136/315 (43%), Positives = 183/315 (58%), Gaps = 19/315 (6%) Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 I PE+ E+ S DGT KW ++ ++ETVYIPE R TLCVSSQVGC+L Sbjct: 2 AEIKAPEVAVEQRSADGTIKWAMQVGD------QQVETVYIPEADRATLCVSSQVGCALA 55 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C+FC T Q RNLT EI+ QV A ++G+F + R I+N+VMMGM Sbjct: 56 CTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVMMGM 105 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 GEPL N NV ++ I D SKRR+TLSTSG VP + + + I V LAISLHA + Sbjct: 106 GEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLHAPN 165 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLIKI 305 ++LR+ +VP+N+KY ++ LID+ Y +SNA ++T EYVML +ND A L ++ Sbjct: 166 DELRDEIVPLNKKYNIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHVNDHVEHAHQLAEV 225 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LK P KINLIP+NP+P Y S I F + + G + +R RG DI AACGQL Sbjct: 226 LKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGLTVIVRKTRGDDIDAACGQL 285 Query: 366 KSLS-KRIPKVPRQE 379 R + +++ Sbjct: 286 AGDVIDRTKRTAQKK 300 >gi|312879541|ref|ZP_07739341.1| 23S rRNA m(2)A-2503 methyltransferase [Aminomonas paucivorans DSM 12260] gi|310782832|gb|EFQ23230.1| 23S rRNA m(2)A-2503 methyltransferase [Aminomonas paucivorans DSM 12260] Length = 635 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 132/363 (36%), Positives = 188/363 (51%), Gaps = 30/363 (8%) Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69 + E E L ++G P R R QI KWIY + + F+ M+D+S E+R L +S Sbjct: 6 LDWSYETWVERLAELGQP----RFRADQICKWIYRKRVFRFEDMTDLSLELREKLQALWS 61 Query: 70 IIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 PE+ E++S DGTRK L R G +E+V + ++ R T C+S+QVGC L C Sbjct: 62 CGIPEVAAEQVSRKDGTRKLLWRL-----GDGQSVESVLLDQEGRRTACISTQVGCPLGC 116 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 +FC TG VRNL+ EI+ Q L + G+ G +V MGMG Sbjct: 117 AFCATGQSGFVRNLSPGEIVGQFLGMEARYGELQG------------------LVTMGMG 158 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVS 247 EPL N D V +L R ITLST G VP I + +GV LA+SLHA + Sbjct: 159 EPLLNADAVFLALGALKHPKMRGLGVRHITLSTCGVVPGIRALAASGLGVRLAVSLHAAN 218 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 + LR+ LVP+N +YPL L +A Y ++ RI+ EY + +G+ND P A L + L+ Sbjct: 219 DALRDRLVPLNAQYPLAELREALVDYQEVT-RDRISIEYALFEGVNDDPSQARQLGEYLR 277 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 G+ +NLIP N Y + + F +++ G+ + +R RG DI AACGQL+ Sbjct: 278 GLSVFVNLIPGNRSLEDAYRRPPRYRVEQFQGILEQQGFETAVRVERGSDIDAACGQLRQ 337 Query: 368 LSK 370 + Sbjct: 338 RVE 340 >gi|227833380|ref|YP_002835087.1| hypothetical protein cauri_1556 [Corynebacterium aurimucosum ATCC 700975] gi|262184366|ref|ZP_06043787.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium aurimucosum ATCC 700975] gi|227454396|gb|ACP33149.1| hypothetical protein cauri_1556 [Corynebacterium aurimucosum ATCC 700975] Length = 368 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 118/374 (31%), Positives = 184/374 (49%), Gaps = 31/374 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 L + + E EAL ++G+P + R Q+ K YV D M+DI R Sbjct: 16 LPPKHFADLTEAERIEALAELGLP----KFRAKQLAKHYYVHHTADVSEMTDIPAAAREA 71 Query: 64 LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + + E + + + DG T K L R + +E+V + R TLC+SSQ Sbjct: 72 VQERLFPTLMEPIRQTSTDDGETTKSLWRLHDGTL-----LESVLMRYPGRATLCISSQA 126 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RNL+ EI+ Q A L+ + G ++SN+ Sbjct: 127 GCGMACPFCATGQGGLDRNLSTAEIVEQFRHAARLMEE--------------EGGRLSNV 172 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239 V MGMGEPL N+ V ++ + S G S+R +T+ST G P I ++ +E + L Sbjct: 173 VFMGMGEPLANYKRVVHAVRQITGSELTGFGLSQRNVTVSTVGLAPAIRKLADEDLSCTL 232 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH ++LR+ LVP+N ++P+E ++DA ++Y S R++ EY +++ ND A Sbjct: 233 AVSLHTPDDELRDTLVPVNNRWPVEEVLDAAKYYADKSGR-RVSIEYALIRDKNDQDFRA 291 Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L + L G +N+IP NP PG E+ + + F + G +R +G Sbjct: 292 DMLGRKLHAALGSKVHVNVIPLNPTPGSEWDAAPKARQDEFVRRVIAQGVPCTVRDTKGD 351 Query: 357 DILAACGQLKSLSK 370 +I AACGQL + + Sbjct: 352 EIAAACGQLAADER 365 >gi|288922416|ref|ZP_06416604.1| radical SAM enzyme, Cfr family [Frankia sp. EUN1f] gi|288346219|gb|EFC80560.1| radical SAM enzyme, Cfr family [Frankia sp. EUN1f] Length = 380 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 125/378 (33%), Positives = 188/378 (49%), Gaps = 27/378 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVR--GIRDFQGMSDISQEVRHLL 64 L + R+E +G+P R Q+ + + R D M+D+ +VR L Sbjct: 23 RHLADLSRDERRAVAESLGLPA----FRADQLARHYFARHLRAEDAAAMTDLPAQVRATL 78 Query: 65 NQHFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + CDG TRK + R +IE+V + R T+CVSSQ Sbjct: 79 VDSL-LPRLLTAATTADCDGGQTRKTVWRTVD-----GAKIESVLMRYPQRTTVCVSSQA 132 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RNL+ EI+ QV+ A + +P ++SN+ Sbjct: 133 GCGMACPFCATGQGGLTRNLSTAEIVEQVVDAAR---------TMTRGGLPGGPGRLSNV 183 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239 V MGMGEPL N++ + +L + GL S R +T+ST G VP I R+ E + V L Sbjct: 184 VFMGMGEPLANYNALLAALRRLIEPTPDGLGLSARSLTVSTVGLVPGIRRLAGEGLPVTL 243 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA ++LRN LVPIN ++P+ +++A Y ++ R++ EY ++ G+NDSP A Sbjct: 244 ALSLHAPDDELRNELVPINTRWPVAEVLEAAWDYARITGR-RVSIEYALIDGVNDSPERA 302 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L +L G A +NLIP NP G + S + F + ++ G ++ +R RG +I Sbjct: 303 DALGALLAGQLAHVNLIPLNPTDGSSWQASAPRGQRVFVDRLRARGVTATVRDTRGREIA 362 Query: 360 AACGQLKSLSKRIPKVPR 377 AACGQL + + R Sbjct: 363 AACGQLAAEPPARRRTGR 380 >gi|320334270|ref|YP_004170981.1| ribosomal RNA large subunit methyltransferase N [Deinococcus maricopensis DSM 21211] gi|319755559|gb|ADV67316.1| Ribosomal RNA large subunit methyltransferase N [Deinococcus maricopensis DSM 21211] Length = 346 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 120/336 (35%), Positives = 173/336 (51%), Gaps = 22/336 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +W++ +G F+ M+++ VR L +S+ + S DG+ K+L Sbjct: 17 YRRKQLLQWVFEKGAGRFEDMTNLPANVRAELAASYSLDPFLHTETARSRDGSVKYLFTL 76 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 ++E VY+P R T+CVS+ VGC C+FC TG RNLTA EI+ QVL Sbjct: 77 HD-----GKQMEAVYMPYLDRKTVCVSTMVGCPAKCAFCATGAMGFGRNLTAGEIVGQVL 131 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 G P R I ++V MGMGE L N+DNV + I + Sbjct: 132 AVARGEGLPP--------------RDIRSLVFMGMGEGLLNYDNVMLASRILLHPLAFDM 177 Query: 213 SKRRITLSTSGFVPNIARVG--EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 SKRR+TLST G I ++ +++G+ LAISLHA + R ++P + + ++DA Sbjct: 178 SKRRVTLSTVGLPKGIRKLAREDDLGIRLAISLHAPDEETRQRIIPTGHRNSIADIMDAA 237 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 R Y ++ RITFEY ML+G+ND A L +L+G+ A +NLIP NPW G + S Sbjct: 238 REYQDVTGR-RITFEYSMLRGVNDHLWQAEELAGLLRGLVAHVNLIPMNPWEGSGFEEST 296 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + I F + + G +R RG D AACGQL Sbjct: 297 EAQIQAFYDVLSARGVEVSVRRSRGRDAGAACGQLA 332 >gi|148243053|ref|YP_001228210.1| Fe-S-cluster redox protein [Synechococcus sp. RCC307] gi|205829914|sp|A5GVE8|RLMN_SYNR3 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|147851363|emb|CAK28857.1| Predicted Fe-S-cluster redox enzyme [Synechococcus sp. RCC307] Length = 346 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 125/374 (33%), Positives = 196/374 (52%), Gaps = 38/374 (10%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + ++L+G+ + +LE G+P R Q+ W+Y +G R + ++ + +R Sbjct: 1 MALKALLGLSQAQLETWAKDQGLPP----FRGRQLHDWLYAKGARHWHDITVLPAALRQQ 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + + ++ ++ DGT K LL + +ETV IP + R T+CVSSQVG Sbjct: 57 --EPLPLGRSNELERHLAQDGTLKLLL-----ATDDGLSLETVGIPTRDRLTVCVSSQVG 109 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG + L R+L EI+ QVL R ++ R+ S++V Sbjct: 110 CPMACRFCATGKEGLQRSLEPHEIVDQVLTVREVM-----------------QRRPSHVV 152 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIG 236 MGMGEPL N D+V ++ S +G++ R+IT+ST G + R+ E Sbjct: 153 FMGMGEPLLNSDHVLTAIDCLSRDLGMAM--RQITVSTVGVPNTLPRLAELALERLGRAQ 210 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 LA+SLHA LR L+P R YP E L++ CRHY +S R++FEY++L +NDSP Sbjct: 211 FTLAVSLHAPDQALREELIPTARAYPYEQLLEDCRHYVAISGR-RVSFEYILLGNLNDSP 269 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 R A L + ++G + +NLIP+NP E+ + + F+ +K+ G + +R RGL Sbjct: 270 RQAQALAEQVRGFQSHVNLIPYNPIAEEEFQRPEPARVDAFAAALKQRGVAVSVRASRGL 329 Query: 357 DILAACGQLKSLSK 370 D AACGQL+ + Sbjct: 330 DQNAACGQLRRQRQ 343 >gi|318042314|ref|ZP_07974270.1| ribosomal RNA large subunit methyltransferase N [Synechococcus sp. CB0101] Length = 356 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 122/375 (32%), Positives = 180/375 (48%), Gaps = 42/375 (11%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + L+GM LE+ + G R Q+ W+Y +G R +S + + R L Sbjct: 3 QPLLGMGLSALEDWAKQHG----QAAFRGRQLHDWLYAKGARQLADVSVLPKGFREQLAA 58 Query: 67 HFS------IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 + + ++ DGT K LL + IETV IP + R T+CVSS Sbjct: 59 QPPDGAFDWMGRSRELHRSVARDGTTKLLL-----GTHDGLSIETVGIPAEGRLTVCVSS 113 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC + C FC TG L R+L EI+ QVL R ++ P S Sbjct: 114 QVGCPMACRFCATGKGGLQRSLAVHEIVDQVLSVREVMEQRP-----------------S 156 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE------- 233 ++V MGMGEPL N + V ++ L ++R+IT+ST G + R+ E Sbjct: 157 HVVFMGMGEPLLNIEAVLDAIQCLCTD--LGMAQRQITVSTVGVPRTLPRLAELALERLG 214 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 LA+SLHA LR L+P YP+E L++ CR Y ++ R++FEY++L G+N Sbjct: 215 RAQFTLAVSLHAPDQRLREELIPTAHAYPIEALLEDCRRYVAITGR-RVSFEYILLGGLN 273 Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353 D PR A L ++L+G + +NLIP+NP E+ + F ++ + +R Sbjct: 274 DQPRHAAALAQLLRGFQSHVNLIPYNPIEEEEFQRPTPAAVDGFRRALQDRHVAVSVRAS 333 Query: 354 RGLDILAACGQLKSL 368 RGLD AACGQL+ Sbjct: 334 RGLDADAACGQLRRR 348 >gi|326334975|ref|ZP_08201175.1| cfr family radical SAM enzyme [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692780|gb|EGD34719.1| cfr family radical SAM enzyme [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 354 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 129/365 (35%), Positives = 204/365 (55%), Gaps = 25/365 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + + + +EEL+ L G R SQ+++W++ +G F M+++S+E R LL + Sbjct: 13 KDIRALKKEELQAFFLAHG----EKAFRASQVYEWLWTKGAHSFDQMTNLSKETRTLLGE 68 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 HF I + ++ + S DGT K +R + +E+V IP +R T C+SSQVGCSL Sbjct: 69 HFVINHIKVDTMQRSEDGTIKNAVRLHD-----GLYVESVLIPTDTRITACISSQVGCSL 123 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC T K +RNL+ +EI QVL I+ R + NIV MG Sbjct: 124 NCTFCATARLKRMRNLSPDEIFDQVL-------------TIDQQSRLYYARPLRNIVFMG 170 Query: 187 MGEPLCNFDNVKKSLSIASDS-MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 MGEPL N+ NV K++ + GL FS +RIT+STSG I ++ ++ + LA+SLH Sbjct: 171 MGEPLMNYPNVIKAIERITSEKEGLGFSPKRITVSTSGISKLIRKMADDRVKFKLAVSLH 230 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 + RN ++P +PL L +A +++ + RIT+EYV+ KG+ND+ +D L+ Sbjct: 231 SAIEQTRNCIMPWTVNFPLTELREALQYWYQHT-KSRITYEYVVWKGVNDTLKDIEALVA 289 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 + P K+NLI +NP +L +D+K ++ + + ++ +G ++ IR RG DI AACGQ Sbjct: 290 FCRFAPCKVNLIEYNPIDDGAFLQADEKILLLYKKKLEEAGITTTIRYSRGKDIDAACGQ 349 Query: 365 LKSLS 369 L + Sbjct: 350 LANKQ 354 >gi|303232118|ref|ZP_07318821.1| 23S rRNA m2A2503 methyltransferase [Veillonella atypica ACS-049-V-Sch6] gi|302513224|gb|EFL55263.1| 23S rRNA m2A2503 methyltransferase [Veillonella atypica ACS-049-V-Sch6] Length = 348 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 121/370 (32%), Positives = 192/370 (51%), Gaps = 30/370 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+G EL+ + + + R Q+ +IY R I FQ M+ + +R L+ + Sbjct: 4 LLGKSLVELQALFEEH----KIQKFRAKQLIDYIYHRHIFVFQDMTQFPKNLRDWLDSNC 59 Query: 69 SIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 I P+++ + +S DG T+K LL IE V + + ++CVSSQVGC++ Sbjct: 60 IISIPKVITQSVSPDGKTQKLLLELTDHS-----RIEAVLMEQYYGNSVCVSSQVGCAMG 114 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC + L R+L+ EI+ QV+L +L + I ++V+MG Sbjct: 115 CVFCASTQGGLFRDLSVSEIVGQVVLFSALKQED-----------------IHSLVVMGA 157 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 GEPL N+DNV ++L + D M S R++T+ST G+VPNI ++ +E + + LA+SLHA Sbjct: 158 GEPLQNYDNVLQALKLIHDPMTFDISYRKMTISTCGWVPNIYKLADEDLPITLALSLHAT 217 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 +++ R ++P+ +Y L+ ++DA ++Y + RITFEY+++ IN S +A L I Sbjct: 218 TDETRRKIMPVGSRYKLDEVLDAVKYYYEKTQR-RITFEYILIDSINVSLEEAHELGNIG 276 Query: 307 KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 K P +NLIP N K + F + + G S IR G I AACGQL Sbjct: 277 KAFPNCHVNLIPVNGNEHINLYKPSSKHMNIFKDIVASYGVSVTIRKEMGDAIQAACGQL 336 Query: 366 KSLSKRIPKV 375 K R ++ Sbjct: 337 KVAHGRKEEI 346 >gi|260494797|ref|ZP_05814927.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium sp. 3_1_33] gi|260197959|gb|EEW95476.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium sp. 3_1_33] Length = 358 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 130/380 (34%), Positives = 202/380 (53%), Gaps = 34/380 (8%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN +K +++ + +EEL E L+ +G+ + +++ W++ + R F M+++S + Sbjct: 1 MNN-EKINILNLTQEELTELLVSLGL----KKFYGKEVFIWLHKKITRSFDEMTNLSLKD 55 Query: 61 RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS------R 113 R +L + I + ++ +IS D T K+L + IETV + K R Sbjct: 56 REILKEKTYIPFFNLLKHQISKIDRTEKFLFELEDKGT-----IETVLLRHKDSKNKEIR 110 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 TLC+SSQVGC + CSFC TG +RNL+ EIL QV + Sbjct: 111 NTLCISSQVGCPVKCSFCATGQSGYMRNLSVSEILNQVYTVER--------------RLR 156 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VG 232 G ++N+V MGMGEPL N DN+ K+LSI S+ G++ SKR+IT+STSG V I + + Sbjct: 157 KKGETLNNLVFMGMGEPLLNIDNLSKALSIISNENGINISKRKITISTSGVVSGIEKILL 216 Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 ++I + LAISLH+ N+ R+ ++P+N+ +PLE L Y + RITFEY+++ Sbjct: 217 DKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLIEYQKQTKR-RITFEYILIDNF 275 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIR 351 N S DA L + +NLIP+N G E+ K I F +K + +R Sbjct: 276 NISETDANALADFVHQFDHVVNLIPYNEVEGVEHTRPSVKKIDKFYNYLKNVRRVNVTLR 335 Query: 352 TPRGLDILAACGQLKSLSKR 371 +G DI ACGQL+ +K+ Sbjct: 336 QEKGSDIDGACGQLRQRNKK 355 >gi|150006853|ref|YP_001301596.1| ribosomal RNA large subunit methyltransferase N [Parabacteroides distasonis ATCC 8503] gi|205829794|sp|A6L8G0|RLMN_PARD8 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|149935277|gb|ABR41974.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503] Length = 343 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 131/367 (35%), Positives = 182/367 (49%), Gaps = 29/367 (7%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 + K L+GM EEL+ ++G+P Q+ WIY + I M++I+ R Sbjct: 1 MVDKRQLLGMTLEELKGVASEVGLPA----YAAKQMADWIYKKKITRISEMTNIAVAKRA 56 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 LL F I + + S DGT K+L G +E+VYIP R TLCVSSQV Sbjct: 57 LLEDSFEIGAYPPSEYQKSKDGTIKYLY-----AAGPGRFVESVYIPTDDRATLCVSSQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG Q NLTA +IL Q+ ++NI Sbjct: 112 GCKMNCLFCMTGKQGFTANLTANQILNQI-------------------QSLPENDSLTNI 152 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 V MGMGEPL N D + K L I + G ++S +RIT+ST G + R EE LA+S Sbjct: 153 VFMGMGEPLDNVDELFKVLEILTAPYGYAWSPKRITVSTIGVTKGLKRFLEESECHLAVS 212 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LH+ R L+P+ + +P +ID + Y S+ RR++FEY++ K +NDS + A L Sbjct: 213 LHSPYPMERLSLMPVEKAFPAREVIDLIKQY-DFSHQRRVSFEYIVFKNLNDSLKHAEAL 271 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +L GIP ++NLI F+ P SD + F + + G IR RG DI AAC Sbjct: 272 SCLLGGIPCRVNLIRFHAIPNVSLETSDIAKMEAFRDFLNAKGVVCTIRASRGEDIFAAC 331 Query: 363 GQLKSLS 369 G L + Sbjct: 332 GMLSTAK 338 >gi|86608506|ref|YP_477268.1| ribosomal RNA large subunit methyltransferase N [Synechococcus sp. JA-2-3B'a(2-13)] gi|123751708|sp|Q2JMN2|RLMN_SYNJB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|86557048|gb|ABD02005.1| radical SAM enzyme, Cfr family [Synechococcus sp. JA-2-3B'a(2-13)] Length = 352 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 131/371 (35%), Positives = 186/371 (50%), Gaps = 36/371 (9%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L+G L++ + G P R Q+ WIY +GIR + ++ + R + Q Sbjct: 6 IPLLGQSLSALKDWAVAQGQPA----YRGQQLHAWIYQKGIRSLEQVTVFPRAWREAV-Q 60 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + + IV + DGT K+LL + IETV IP R T+CVSSQVGC + Sbjct: 61 SYPVGRSRIVQRTEARDGTVKFLL-----GLADGQLIETVGIPTAKRLTVCVSSQVGCPM 115 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG RNL EIL QVL + GR++S++V MG Sbjct: 116 ACDFCATGKMGYRRNLELHEILDQVLTVQE-----------------DFGRRVSHVVFMG 158 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245 MGEPL N D V +++ + + +R ITLST G IA + + ++ V LA+SLHA Sbjct: 159 MGEPLLNRDTVVQAIRSLNQD--IGIGQRHITLSTVGVPRQIAWLAQQDLQVTLAVSLHA 216 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + DLR L+P YPL+ LI CR Y L RR++FEY +L G+ND P A L ++ Sbjct: 217 PNQDLRQRLIPSASHYPLDTLIQDCRDY-MLRTGRRVSFEYTLLSGVNDLPIHARQLAQL 275 Query: 306 LK-----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L+ G+ +NLIP+NP +Y + F +++ + +R RGLD A Sbjct: 276 LQQASRSGVQLHVNLIPYNPISEADYQRPHPTRVREFVRQLEQHQVRATVRQTRGLDGNA 335 Query: 361 ACGQLKSLSKR 371 ACGQL+ R Sbjct: 336 ACGQLRGSFLR 346 >gi|256379897|ref|YP_003103557.1| ribosomal RNA large subunit methyltransferase N [Actinosynnema mirum DSM 43827] gi|255924200|gb|ACU39711.1| radical SAM enzyme, Cfr family [Actinosynnema mirum DSM 43827] Length = 368 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 123/372 (33%), Positives = 186/372 (50%), Gaps = 26/372 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 L L + E+ EA+ +G R +Q+ + R D M+DI R Sbjct: 15 LPPRHLADLTAEQRREAVASLG----EQPFRANQLSNHYFGRLTVDPDAMTDIPAAAREK 70 Query: 64 L-NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L ++ E+ + TRK LLR + +E+V + R TLC+SSQ Sbjct: 71 LVGDLMPPLWTEVRSVEADAGTTRKTLLRAHDGTL-----VESVLMRYPDRATLCISSQA 125 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RNL+ EI+ QV + + D ++P ++SNI Sbjct: 126 GCGMACPFCATGQGGLQRNLSTAEIVDQVRRGAAAMRD---------GLLPGGPGRLSNI 176 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSM--GLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239 V MGMGEPL N+ V +++ D GL S+R +T+ST G VP I ++ EE + V L Sbjct: 177 VFMGMGEPLANYKRVIEAVHRICDPAPAGLGISQRSVTVSTVGLVPAIRKLTEENLQVRL 236 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH ++LR+ LVP+N ++ + +++A R Y + R++ EY +++ IND A Sbjct: 237 AVSLHTPDDELRDTLVPVNTRWKVAEVMEAARGYADRTGR-RVSIEYALIRDINDQGWRA 295 Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L K+L+ G +NLIP NP PG ++ S + F +K G +R RG Sbjct: 296 DMLGKLLRRHLGPLVHVNLIPLNPTPGSKWDASPKPVEREFVRRVKEQGVECTVRDTRGQ 355 Query: 357 DILAACGQLKSL 368 +I AACGQL + Sbjct: 356 EIAAACGQLAAE 367 >gi|310828893|ref|YP_003961250.1| hypothetical protein ELI_3325 [Eubacterium limosum KIST612] gi|308740627|gb|ADO38287.1| hypothetical protein ELI_3325 [Eubacterium limosum KIST612] Length = 340 Score = 374 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 129/370 (34%), Positives = 195/370 (52%), Gaps = 33/370 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 E++ G E + + G P R Q+++W+Y + +++S+ +R L Sbjct: 2 ENIFGKTLTECRMLMEEAGEPS----FRGKQLYQWLYEKKAAQLDDCTNLSKNLREKLKS 57 Query: 67 HFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 H++I + I + DGTRK+L+R P IETV + +LCVSSQVGC Sbjct: 58 HYNIEHGSIEKTQEDPEDGTRKYLIRLPD-----GNSIETVLMSYHHGYSLCVSSQVGCR 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC + +R+L A EIL Q+ L G +ISN+V+M Sbjct: 113 MGCAFCASTKGGKIRDLEAGEILDQIYLVEQ-----------------EAGIRISNVVIM 155 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244 G+GEPL N+DN+ K L+IA+ G +R+ITLST G VP I + E ++ + LAISLH Sbjct: 156 GIGEPLDNYDNILKFLNIAN--EGWGIGQRKITLSTCGLVPQIEALAELDLQINLAISLH 213 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 + + R L+P+ +KY +E L+ C +Y + RITFEY ++ G ND P D L + Sbjct: 214 SPFQERRETLMPVAKKYRIEELLKVCNNYFTKTKR-RITFEYALIDGFNDRPEDVAELAE 272 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 IL +P INLI NP Y S +++ FS +K+ G + IR G +I AACGQ Sbjct: 273 ILGKMPCHINLIGLNPVTESAYKGS--RNVNFFSNELKKRGITCTIRRKIGDNIDAACGQ 330 Query: 365 LKSLSKRIPK 374 L+ + + + Sbjct: 331 LRQKADGMKR 340 >gi|322379396|ref|ZP_08053767.1| Predicted Fe-S-cluster redox enzyme [Helicobacter suis HS1] gi|321148214|gb|EFX42743.1| Predicted Fe-S-cluster redox enzyme [Helicobacter suis HS1] Length = 383 Score = 374 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 129/378 (34%), Positives = 199/378 (52%), Gaps = 38/378 (10%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +SL + EEL+ QI+ W+Y R F M ++ + ++ L + Sbjct: 25 QSLYNLTFEELQTYAADH----HFKPFVAKQIFAWLYQRYATSFDQMHNLPKSLKTTLQR 80 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR------------- 113 F I +++ ++ S D + K L + E+V++ K + Sbjct: 81 DFCIQNLKLLVKECSQDKSEKCLFATHDQ-----HSFESVFMVMKEKQIGDKGQILAQEK 135 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 T C+SSQ+GC + C FC T VRNL A EI+ QV+ + + P Sbjct: 136 LTFCLSSQIGCKVGCVFCATAKGGFVRNLKAGEIVEQVVALKRMHSLEPTKG-------- 187 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233 N+V MGMGEPL NF+ V +SL I S GL+ S RRITLSTSG VP + +G Sbjct: 188 ------INLVFMGMGEPLHNFEQVVRSLKILSHPHGLNISPRRITLSTSGVVPMMDILGA 241 Query: 234 -EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 +GV LAISLHAV+++LR+ L+PIN+ Y ++ LI A R +P + +R+ FEY+++K Sbjct: 242 LNLGVQLAISLHAVNDELRSKLMPINKTYNIQELIKAARRFP-IDARKRLMFEYLVIKDY 300 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 ND A L+++L G+ +KINLIP+NP ++ D + + F++ + + G +R Sbjct: 301 NDGLEHAKALLRLLNGLRSKINLIPYNPTTHSKFERPDLEKVKQFADFLNQRGLLCTMRL 360 Query: 353 PRGLDILAACGQLKSLSK 370 +GLDI AACGQL+ ++ Sbjct: 361 SKGLDISAACGQLREKTR 378 >gi|296393255|ref|YP_003658139.1| radical SAM enzyme, Cfr family [Segniliparus rotundus DSM 44985] gi|296180402|gb|ADG97308.1| radical SAM enzyme, Cfr family [Segniliparus rotundus DSM 44985] Length = 368 Score = 374 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 127/378 (33%), Positives = 185/378 (48%), Gaps = 32/378 (8%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 + L + EL +A+ +G R Q+ + Y R D + M+D+ R Sbjct: 13 RAMPPRHLADLSAGELRDAVAGLG----EKPFRAGQLARHYYTRLTVDPEAMTDVPAASR 68 Query: 62 HLLNQHFSIIYPEIVDEKIS--CDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLC 117 L + F P++V + CD T K L R + +E+V + R TLC Sbjct: 69 GALAEAF---LPDLVTPARTMGCDRGETVKTLWRLHDGSL-----VESVLMAYADRVTLC 120 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 VSSQ GC + C FC TG L RNL+ EI+ QV LA D + R Sbjct: 121 VSSQAGCGMACPFCATGQGGLTRNLSTAEIVEQVRLAALAARD---------GKLAGGAR 171 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE- 234 +SNIV MGMGEPL N+ V ++ + G S+R + +ST G VP I R+ E Sbjct: 172 HLSNIVFMGMGEPLANYRRVLDAVRRITSPAPEGFGISQRSVVVSTVGLVPAIHRLANEG 231 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 + V LA+SLHA ++LR+ LVP+N ++P+ ++ A + Y + R++ EY +++ +ND Sbjct: 232 LSVTLAVSLHAPDDELRDTLVPVNTRWPVAEVLAAAKGYAQQTGR-RVSVEYALIRDVND 290 Query: 295 SPRDALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351 P A L +L G A +NLIP NP PG E+ S + F ++ G S +R Sbjct: 291 QPWRADLLGGLLHEALGSLAHVNLIPLNPTPGSEWDASPPEAQREFVRRVRAKGVSCTVR 350 Query: 352 TPRGLDILAACGQLKSLS 369 RG +I AACGQL S Sbjct: 351 DTRGQEIAAACGQLAGSS 368 >gi|282859577|ref|ZP_06268681.1| radical SAM enzyme, Cfr family [Prevotella bivia JCVIHMP010] gi|282587628|gb|EFB92829.1| radical SAM enzyme, Cfr family [Prevotella bivia JCVIHMP010] Length = 344 Score = 374 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 115/369 (31%), Positives = 193/369 (52%), Gaps = 29/369 (7%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 + K L+G EL++ ++G+P Q+ +W+YV+ ++ M++IS+ R Sbjct: 2 EINKLPLLGKTLFELKQVAKELGLPA----FAGKQMAEWLYVKHVKSIDEMTNISKANRE 57 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L ++I +D + S DGT K+L +ETVYIP++ R TLCVSSQV Sbjct: 58 KLESVYTIGCKAPIDAQHSQDGTIKYLF-----PTERGKFVETVYIPDEDRATLCVSSQV 112 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG Q +L+A +IL Q+ K++NI Sbjct: 113 GCKMNCLFCQTGKQGFEGSLSATDILNQIYSLPERD-------------------KLTNI 153 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 V MG GEP+ N DNV ++ + + ++S +RIT+S+ G + R +E +AIS Sbjct: 154 VFMGQGEPMDNLDNVLRTTELMTAEYAYAWSPKRITVSSVGLKSKLKRFLDESQCHVAIS 213 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 +H+ ++ R ++P + ++ ++D R+Y S+ RR++FEY++ G NDS A + Sbjct: 214 MHSPLHEQREEIMPAEKGMRIQEVVDLLRNY-DFSHQRRLSFEYIVFGGKNDSMEYAKAI 272 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + ++KG+ + NLI F+ P +D++ + F + + + G + IR RG DI AAC Sbjct: 273 VDLVKGLDCRFNLIRFHQIPNVPLKGADRETMEKFRDYLTKHGVFTTIRASRGQDIFAAC 332 Query: 363 GQLKSLSKR 371 G L + K+ Sbjct: 333 GLLSTAKKQ 341 >gi|256844888|ref|ZP_05550346.1| radical SAM family enzyme [Fusobacterium sp. 3_1_36A2] gi|256718447|gb|EEU32002.1| radical SAM family enzyme [Fusobacterium sp. 3_1_36A2] Length = 358 Score = 374 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 130/380 (34%), Positives = 202/380 (53%), Gaps = 34/380 (8%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN +K +++ + +EEL E L+ +G+ + +++ W++ + R F M+++S + Sbjct: 1 MNN-EKINILNLTQEELTELLVSLGL----KKFYGKEVFIWLHKKITRSFDEMTNLSLKD 55 Query: 61 RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS------R 113 R +L + I + ++ ++S D T K+L + IETV + K R Sbjct: 56 REILKEKTYIPFFNLLKYQVSKIDKTEKFLFELEDKGT-----IETVLLRHKDSKNREIR 110 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 TLCVSSQVGC + CSFC TG +RNL+ EIL Q+ + Sbjct: 111 NTLCVSSQVGCPVKCSFCATGQSGYMRNLSVSEILNQIYTVER--------------RLR 156 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VG 232 G ++N+V MGMGEPL N DN+ KSLSI S+ G++ SKR+IT+STSG V I + + Sbjct: 157 KKGETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGINISKRKITISTSGVVSGIEKILL 216 Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 ++I + LAISLH+ N+ R+ ++P+N+ +PLE L Y + RITFEY+++ Sbjct: 217 DKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLVEYQKQTKR-RITFEYILIDNF 275 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIR 351 N S DA L + +NLIP+N G E+ K I F +K + +R Sbjct: 276 NISEADANALADFIHQFDHVVNLIPYNEVEGVEHTRPSVKKIDKFYNYLKNVRKVNVTLR 335 Query: 352 TPRGLDILAACGQLKSLSKR 371 +G DI ACGQL+ +K+ Sbjct: 336 QEKGSDIDGACGQLRQRNKK 355 >gi|302039009|ref|YP_003799331.1| ribosomal RNA large subunit methyltransferase N [Candidatus Nitrospira defluvii] gi|300607073|emb|CBK43406.1| Ribosomal RNA large subunit methyltransferase N [Candidatus Nitrospira defluvii] Length = 366 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 143/362 (39%), Positives = 205/362 (56%), Gaps = 28/362 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + +L+ + E+ + +G P R SQI +W+Y R F MS++SQ+ R L Sbjct: 13 RTNLLALTESEMAAFVASLGWPA----YRASQILRWLYQERARTFAEMSNLSQKDREYLT 68 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I V S DGT+K +L ++E V IP++ R TLC+S+QVGC+ Sbjct: 69 GSSRIERTSAVQIFSSQDGTKKLVLTL-----ADGNQVECVLIPDEDRLTLCLSTQVGCT 123 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC TGT L RNL A EI+ QVLLA+ L + G++++N+V M Sbjct: 124 LDCGFCLTGTLGLQRNLRAHEIIDQVLLAQDHLQE---------------GQRLTNLVFM 168 Query: 186 GMGEPLCNFDNVKKSLSIASDS-MGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 GMGEPL N D V +++ ++ GL FS RRIT+ST+G I V + V LAISL+ Sbjct: 169 GMGEPLANLDAVADAVTRLTNQTWGLGFSGRRITISTAGLASRIKDVA-PLKVNLAISLN 227 Query: 245 AVSNDLRNILVPINRK-YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 A ++ LR+ L+P + + L+ L+ ACR YP L++ R+TFEYV+L +ND DA L+ Sbjct: 228 ATTDALRDQLMPAANRLHSLDALLAACRAYP-LADRDRLTFEYVLLADVNDRTEDAARLV 286 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+L+G+ K+NLI FNP+PG Y I TF + ++R +R RG D+L ACG Sbjct: 287 KLLRGLRCKVNLIAFNPFPGNPYRRPSDAAIDTFQDTLRRGHVDVYLRRSRGRDVLGACG 346 Query: 364 QL 365 QL Sbjct: 347 QL 348 >gi|110639497|ref|YP_679706.1| hypothetical protein CHU_3124 [Cytophaga hutchinsonii ATCC 33406] gi|123354303|sp|Q11QF0|RLMN_CYTH3 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|110282178|gb|ABG60364.1| 23S rRNA m(2)A-2503 methyltransferase [Cytophaga hutchinsonii ATCC 33406] Length = 365 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 129/371 (34%), Positives = 199/371 (53%), Gaps = 24/371 (6%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 +KK+ + + EEL++ + G R+ Q+++W++ R R F+ M+++S+E R Sbjct: 18 TEIKKKCIRSLSAEELKDFFVASG----EKAFRSRQVYEWLWKRSARSFEQMTNLSKETR 73 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 LL +FSI I +++S DGT K+ + + +E V IP R T C+SSQ Sbjct: 74 TLLENNFSINPVTISQKQVSTDGTIKFGFKLHDGYL-----VEGVLIPADDRMTACISSQ 128 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGCSLTC FC TG RNL EI QV+L + + ++N Sbjct: 129 VGCSLTCKFCATGYMDRKRNLEPYEIYDQVVLIKEAAEE-------------HYQTPLTN 175 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240 IV+MGMGEPL N+ NV K + + GL + +RITLST+G I ++G+E + LA Sbjct: 176 IVLMGMGEPLLNYTNVLKGIDKVTSEEGLHIASKRITLSTAGIAKMITKLGDEKVKFRLA 235 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++ RN ++PIN L +L ++ H+ + + +TFEY++ G+ND+ +DA Sbjct: 236 LSLHAANDVKRNTIMPINETNNLNVLKESLLHFCKETGSS-VTFEYIVFDGVNDTAQDAK 294 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L K IP KIN+I +NP +++ + + F + + G IR RG DI A Sbjct: 295 ELYAFAKNIPCKINIIEYNPIQEADFMNTSVDKLEQFKKVLTDKGIIVNIRRSRGKDIDA 354 Query: 361 ACGQLKSLSKR 371 ACGQL + Sbjct: 355 ACGQLAIKEVK 365 >gi|34763242|ref|ZP_00144204.1| Radical SAM family enzyme [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887095|gb|EAA24204.1| Radical SAM family enzyme [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 358 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 130/380 (34%), Positives = 202/380 (53%), Gaps = 34/380 (8%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN +K +++ + +EEL E L+ +G+ + +++ W++ + R F M+++S + Sbjct: 1 MNN-EKINILNLTQEELTELLVSLGL----KKFYGKEVFIWLHKKITRSFDEMTNLSLKD 55 Query: 61 RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS------R 113 R +L + I + ++ ++S D T K+L IETV + K R Sbjct: 56 REILKEKTYIPFFNLLKYQVSKIDKTEKFLFELEDGGT-----IETVLLRHKDSKNREIR 110 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 TLCVSSQVGC + CSFC TG +RNL+ EIL Q+ + + Sbjct: 111 NTLCVSSQVGCPVKCSFCATGQSGYMRNLSVSEILNQIYIVER--------------RLR 156 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VG 232 G ++N+V MGMGEPL N DN+ KSLSI S+ G++ SKR+IT+STSG V I + + Sbjct: 157 KKGETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGVNISKRKITISTSGVVSGIEKILL 216 Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 ++I + LAISLH+ N+ R+ ++P+N+ +PLE L Y + RITFEY+++ Sbjct: 217 DKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLVEYQKQTKR-RITFEYILIDNF 275 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIR 351 N S DA L + +NLIP+N G E+ K I F +K + +R Sbjct: 276 NISETDANALADFIHQFDHVVNLIPYNEVEGVEHTRPSVKKIDKFYNYLKNIRKVNVTLR 335 Query: 352 TPRGLDILAACGQLKSLSKR 371 +G DI ACGQL+ +K+ Sbjct: 336 QEKGSDIDGACGQLRQRNKK 355 >gi|229916075|ref|YP_002884721.1| radical SAM enzyme, Cfr family [Exiguobacterium sp. AT1b] gi|229467504|gb|ACQ69276.1| radical SAM enzyme, Cfr family [Exiguobacterium sp. AT1b] Length = 353 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 122/372 (32%), Positives = 206/372 (55%), Gaps = 27/372 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ G+ ++L + G Q+W +Y+ ++ + ++ EVR L Sbjct: 2 KSSIYGLTFDQLTNECTEAGYGA----FHARQVWDSLYIDRVKSMDDL-NVRDEVRDYLT 56 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + I E+ ++ + DGT K+LL+ IETV + K ++CV++QVGC+ Sbjct: 57 EKYVISTQELFVKQEAGDGTVKFLLKLHD-----GHYIETVLMRHKYGRSVCVTTQVGCN 111 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + CSFC +G K R+LTA E++ Q++ + L + G ++S+IV+M Sbjct: 112 IGCSFCASGLLKKTRDLTAGEVVEQIMTVQHFLDE------------EGEGDRVSHIVVM 159 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244 G+GEP NFDN+ L + D GL+ + R+I +STSG I + + ++ + LA+SLH Sbjct: 160 GIGEPFDNFDNLVDFLLVVKDERGLAIAPRKINVSTSGLADKIYKFADLDLRINLALSLH 219 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +++LR ++ INR +PL+ L+ + R+Y +N RITFEY++L +ND P A L Sbjct: 220 APNDELRTRIMKINRAFPLDKLMPSIRYYVEKTNK-RITFEYILLSKVNDLPEHAEELAD 278 Query: 305 ILKGI--PAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +++ I + +NLIP+NP +Y S +DI+ F + +K+ G ++ +R G DI AA Sbjct: 279 LIEDIKDKSYVNLIPYNPVNEHIQYERSTPEDIMAFYDILKKRGVNTGVRLEHGTDIDAA 338 Query: 362 CGQLKSLSKRIP 373 CGQL+S + Sbjct: 339 CGQLRSKHMNVE 350 >gi|227504805|ref|ZP_03934854.1| possible Fe-S-cluster redox protein [Corynebacterium striatum ATCC 6940] gi|227198655|gb|EEI78703.1| possible Fe-S-cluster redox protein [Corynebacterium striatum ATCC 6940] Length = 372 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 119/374 (31%), Positives = 187/374 (50%), Gaps = 31/374 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 L + + ++E L ++G+P + R +Q+ K YV D + M+DI R Sbjct: 20 LPPKHFADLTQDERIAVLAELGLP----KFRANQLAKHYYVHRTADVEEMTDIPANKRAE 75 Query: 64 LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L + E + + + DG T K L R + +E+V + R TLC+SSQ Sbjct: 76 LQERLFPNLMEPIRQTSTDDGETTKSLWRLHDGTM-----LESVLMRYPGRATLCISSQA 130 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RNL+ EI+ Q LA L+ D G +++N+ Sbjct: 131 GCGMACPFCATGQGGLDRNLSTAEIVEQFRLAAKLMED--------------EGGRLTNV 176 Query: 183 VMMGMGEPLCNFDNVKKSLSIAS--DSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239 V MGMGEPL N+ V ++ + D G S+R +T+ST G P I ++ +E + L Sbjct: 177 VFMGMGEPLANYKRVVHAVRQITGQDLEGFGLSQRNVTVSTVGLAPAIRKLADEDLSCTL 236 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH ++LR+ LVP+N ++P+E ++DA R+Y S R++ EY +++ ND A Sbjct: 237 AVSLHTPDDELRDSLVPVNNRWPVEEVLDAARYYADKSGR-RVSIEYALIRDKNDQDFRA 295 Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L + L G +N+IP NP PG E+ + + F + G +R +G Sbjct: 296 DMLGQKLHRALGSKVHVNVIPLNPTPGSEWDAAPKARQDEFVRRVIAQGVPCTVRDTKGD 355 Query: 357 DILAACGQLKSLSK 370 +I AACGQL + + Sbjct: 356 EIAAACGQLAADER 369 >gi|291166481|gb|EFE28527.1| radical SAM enzyme, Cfr family [Filifactor alocis ATCC 35896] Length = 345 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 124/362 (34%), Positives = 191/362 (52%), Gaps = 30/362 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L M E+EE +L +G + R QI+ ++ +G+ M +S++ R L + Sbjct: 3 VDLRSMEYYEVEEVVLNLG----EKKYRAKQIYNFL-AKGVSSIDEMYTLSKDFREKLKE 57 Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + I +I + S DGTRK+L+ G IETV + K+ ++C+S+QVGC Sbjct: 58 RYYICKTDIYHKLESNLDGTRKYLIEL-----GDGNLIETVLMIYKNGPSICLSTQVGCR 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC + LVRNLT EI+ Q++ + LG+ +I+NIV+M Sbjct: 113 MGCKFCASTVDGLVRNLTPGEIIGQMITVQKDLGE-----------------RIANIVIM 155 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G GEP NFDN+ K L + + GL R IT+ST G VP I + + I + LAISLH Sbjct: 156 GSGEPFDNFDNLVKFLKLVHEDYGLQIGYRHITISTCGLVPKIREMEKLGIPINLAISLH 215 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 V + R ++PI + Y +E LI+A +HY ++ R+T+EY +++G+ DS +A L Sbjct: 216 QVEQNKREEIMPIAKVYDIEELIEAGKHYANVTKR-RVTYEYALIEGVTDSLEEAHKLGS 274 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKG + INLIP NP + + K + F + + + +R G DI ACGQ Sbjct: 275 LLKGSLSLINLIPINPIKEKSFKKPNLKRVQAFQKVLLNYHIITTVRRELGSDINGACGQ 334 Query: 365 LK 366 L+ Sbjct: 335 LR 336 >gi|124022151|ref|YP_001016458.1| ribosomal RNA large subunit methyltransferase N [Prochlorococcus marinus str. MIT 9303] gi|205829805|sp|A2C6T3|RLMN_PROM3 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123962437|gb|ABM77193.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus str. MIT 9303] Length = 356 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 122/368 (33%), Positives = 185/368 (50%), Gaps = 37/368 (10%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++L+G ELE + G P R Q+ W+Y +G R F ++ + + R L Q Sbjct: 11 QALLGCSATELESWAVAEGQPA----FRGRQLHDWLYAKGARSFDAITVLPKSWRISLQQ 66 Query: 67 H-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +I V+ ++ D T K LL IE+V IP + R T+C+SSQVGC Sbjct: 67 RGLTIGRLLEVNRAVAVDDTTKLLL-----ATVDGETIESVGIPTQQRLTVCLSSQVGCP 121 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC +G L R+L EI+ QVL R + R+ S++V M Sbjct: 122 MACRFCASGKGGLQRSLATHEIVDQVLSLREAM-----------------DRRPSHVVFM 164 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIGVM 238 GMGEPL N + V S+ + L ++RRIT+ST G + ++ E Sbjct: 165 GMGEPLLNIEAVLASIRCLNID--LGIAQRRITVSTVGVPHTLPQLAELAMKRLGRAQFT 222 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLHA + +LR L+P YP E L+ CRHY ++ R+TFEY++L +ND P+ Sbjct: 223 LAVSLHAPNQELRERLIPTACAYPFETLLQDCRHYLAVTGR-RVTFEYILLGALNDQPQH 281 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L + ++G + +NLI +NP + + + I F +++ G + +R RGLD Sbjct: 282 AEELAERVRGFQSHVNLIAYNPIDDEGFQRPNPETIEAFRRVLEQRGVAVSLRASRGLDQ 341 Query: 359 LAACGQLK 366 AACGQL+ Sbjct: 342 NAACGQLR 349 >gi|262384399|ref|ZP_06077534.1| cfr family radical SAM enzyme [Bacteroides sp. 2_1_33B] gi|301308675|ref|ZP_07214627.1| radical SAM enzyme, Cfr family [Bacteroides sp. 20_3] gi|262294102|gb|EEY82035.1| cfr family radical SAM enzyme [Bacteroides sp. 2_1_33B] gi|300833199|gb|EFK63817.1| radical SAM enzyme, Cfr family [Bacteroides sp. 20_3] Length = 343 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 131/367 (35%), Positives = 182/367 (49%), Gaps = 29/367 (7%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 + K L+GM EEL+ ++G+P Q+ WIY + I M++I+ R Sbjct: 1 MVDKRQLLGMTLEELKGVASEVGLPA----YAAKQMADWIYKKKITRISEMTNIAVAKRA 56 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 LL F I + + S DGT K+L G +E+VYIP R TLCVSSQV Sbjct: 57 LLEDSFEIGAYPPSEYQKSKDGTIKYLY-----AAGPGRFVESVYIPTDDRATLCVSSQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG Q NLTA +IL Q+ ++NI Sbjct: 112 GCKMNCLFCMTGKQGFTANLTANQILNQI-------------------QSLPENDSLTNI 152 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 V MGMGEPL N D + K L I + G ++S +RIT+ST G + R EE LA+S Sbjct: 153 VFMGMGEPLDNVDELFKVLEILTAPYGYAWSPKRITVSTIGVTKGLKRFLEESECHLAVS 212 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LH+ R L+P+ + +P +ID + Y S+ RR++FEY++ K +NDS + A L Sbjct: 213 LHSPYPMERLSLMPVEKAFPAREVIDLIKQY-DFSHQRRVSFEYIVFKNLNDSLKHAEAL 271 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +L GIP ++NLI F+ P SD + F + + G IR RG DI AAC Sbjct: 272 SCLLGGIPCRVNLIRFHAIPNVSLETSDIVKMEAFRDFLNAKGVVCTIRASRGEDIFAAC 331 Query: 363 GQLKSLS 369 G L + Sbjct: 332 GMLSTAK 338 >gi|323358368|ref|YP_004224764.1| Fe-S-cluster redox enzyme [Microbacterium testaceum StLB037] gi|323274739|dbj|BAJ74884.1| predicted Fe-S-cluster redox enzyme [Microbacterium testaceum StLB037] Length = 442 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 120/372 (32%), Positives = 182/372 (48%), Gaps = 18/372 (4%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L M E E + ++G+P R Q+ K + D M+D+ R L Sbjct: 70 VHLADMTAAERVEKVKELGLPG----FRAKQLEKHYFTHYTSDPAEMTDLPASGREELVA 125 Query: 67 HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 V + G T K+L + + +E+V + R TLCVSSQ GC Sbjct: 126 GMLPPLLTEVRRLETDRGDTIKFLWKLHDGAL-----VESVLMRYPGRITLCVSSQAGCG 180 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISNIV 183 + C FC TG L RN++A EI+ Q++ A +L+ G G + V ++SNIV Sbjct: 181 MNCPFCATGQAGLTRNMSAAEIIEQIVRANALIAAGGLGGKTLRQAQGPGQVPERVSNIV 240 Query: 184 MMGMGEPLCNFDNVKKSLSIASD-SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 MGMGEPL N+ V +++ + D GL S R IT+ST G VP I ++ +E I V A+ Sbjct: 241 FMGMGEPLANYARVMQAVRVMVDKDHGLGMSARGITVSTVGLVPAIKKLADEDIPVTFAL 300 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA + LR+ L+P+N ++ ++ +DA R Y + R++ EY ++K +ND A Sbjct: 301 SLHAPDDGLRDELIPVNSRWKVDEALDAARAYFDKTGR-RVSIEYALIKDMNDHAWRADL 359 Query: 302 LIKIL--KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 L L +G +N IP NP PG + S+ F + +G + +R RG +I Sbjct: 360 LADKLNARGRGWVHVNPIPLNPTPGSIWTASEVPVQNEFVRRLNDAGIPTTLRDTRGKEI 419 Query: 359 LAACGQLKSLSK 370 ACGQL + + Sbjct: 420 DGACGQLVATEE 431 >gi|242058145|ref|XP_002458218.1| hypothetical protein SORBIDRAFT_03g029230 [Sorghum bicolor] gi|241930193|gb|EES03338.1| hypothetical protein SORBIDRAFT_03g029230 [Sorghum bicolor] Length = 407 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 138/363 (38%), Positives = 201/363 (55%), Gaps = 26/363 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGI--RDFQGMSDISQEVRHL 63 K L GM ELE + G M +WK +Y + + ++ ++++ R + Sbjct: 47 KAMLKGMDYSELENWVQAQGFRPGQAMM----LWKCLYGNNVWAHCYDELTGLNKDFRKM 102 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQV 122 + +H + + D + DGTRK L + IETV IP + R T+CVSSQV Sbjct: 103 ITEHADLKALTVKDIHTASDGTRKILFSLEDGSV-----IETVIIPCARGRTTVCVSSQV 157 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC++ C FC+TG L ++L+ EI+ Q + AR L D G I+N+ Sbjct: 158 GCAMNCQFCFTGRMGLRKHLSTAEIVEQAVFARRLFSDEFGS--------------INNV 203 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 V MGMGEP N DNV K+ +I D GL FS R++T+STSG VP + R +E LA+S Sbjct: 204 VFMGMGEPFHNIDNVIKASAIMVDGQGLQFSPRKVTVSTSGLVPQLKRFLQESNCSLAVS 263 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 L+A ++++RN ++PINRKY L +L+ R L + + FEYVML G+NDS DA L Sbjct: 264 LNATTDEVRNWIMPINRKYNLNLLLGTLREELNLRKKQIVLFEYVMLSGVNDSMDDAKRL 323 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 I++++GIP KINLI FNP G ++ + I+ F + + G + +R RG D +AAC Sbjct: 324 IELVQGIPCKINLISFNPHGGSQFKPTPDDKIIEFRNVLIQGGLTVFVRLSRGDDQMAAC 383 Query: 363 GQL 365 GQL Sbjct: 384 GQL 386 >gi|19703861|ref|NP_603423.1| florfenicol resistance protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|81590892|sp|Q8RFZ9|RLMN_FUSNN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|19714019|gb|AAL94722.1| Florfenicol resistance protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 358 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 128/376 (34%), Positives = 199/376 (52%), Gaps = 33/376 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +++ + +EEL E L+ +G+ + +++ W++ + R F M+++S + R +L Sbjct: 4 EKINILNLTQEELTELLVSLGL----KKFYGKEVFIWLHKKITRSFDEMTNLSLKDREIL 59 Query: 65 NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLC 117 + I + ++ ++S D T K+L IETV + K R TLC Sbjct: 60 KEKTYIPFFNLLKYQVSKIDKTEKFLFELEDGGT-----IETVLLRHKDSKNKEIRNTLC 114 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 VSSQVGC + CSFC TG +RNL+ EIL Q+ + G Sbjct: 115 VSSQVGCPVKCSFCATGQSGYMRNLSVSEILNQIYTVER--------------RLRKKGE 160 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIG 236 ++N+V MGMGEPL N DN+ K+LSI S+ G++ SKR+IT+STSG V I + + ++I Sbjct: 161 NLNNLVFMGMGEPLLNIDNLSKALSIISNENGINISKRKITISTSGVVSGIEKILLDKIP 220 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 + LAISLH+ N+ R+ ++PIN+ +PLE L Y + RITFEY+++ N S Sbjct: 221 IELAISLHSAINEKRDKIIPINKNFPLEDLSAVLIEYQKQTKR-RITFEYILIDNFNISE 279 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRG 355 DA L + +NLIP+N G E+ K I F +K + +R +G Sbjct: 280 TDANALADFIHQFDHVVNLIPYNEVEGAEHTRPSVKKINKFYIYLKNVRKVNVTLRQEKG 339 Query: 356 LDILAACGQLKSLSKR 371 DI ACGQL+ +K+ Sbjct: 340 SDIDGACGQLRQRNKK 355 >gi|313891997|ref|ZP_07825598.1| 23S rRNA m2A2503 methyltransferase [Dialister microaerophilus UPII 345-E] gi|313119640|gb|EFR42831.1| 23S rRNA m2A2503 methyltransferase [Dialister microaerophilus UPII 345-E] Length = 344 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 126/363 (34%), Positives = 194/363 (53%), Gaps = 29/363 (7%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 + G +ELEE + P + R QI ++Y R I F M + + +R L ++ Sbjct: 4 DIWGKSLKELEEYITLNNFP----KFRAKQIHDYLYHRCIFTFDEMKQLPKNMREWLKEN 59 Query: 68 FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 SI PE+++ S DG T K L + + ETV + K ++CVS+Q+GC++ Sbjct: 60 ASIYIPEVINSIQSNDGNTTKILFKLKDGSLA-----ETVCMHHKYGNSICVSTQIGCAM 114 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC + L RNLT E+L QV + L + +IV+MG Sbjct: 115 GCIFCASTRNGLERNLTFGEMLSQVYAFKKLK-----------------NISVHSIVLMG 157 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHA 245 GEPL N++N K + + +DS L+ S R ITLST G VP I R+ E + + LAISLHA Sbjct: 158 AGEPLTNYENCLKFIKLCNDSSILNISYRNITLSTCGIVPQIYRLEKENLPITLAISLHA 217 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ +RN ++P ++ + +E +I A +HY + RITFEY+++KGIN +P A+ L K+ Sbjct: 218 PNDKIRNEILPSSKHFKIEDVIRASKHYFENTGR-RITFEYILIKGINAAPEHAVELAKL 276 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + + INLIP N + +K+I F + +++ G S+ +R G +I AACGQL Sbjct: 277 VGNLNCHINLIPVNGTEHIQLFAPSKKEIFEFQQILEKMGKSATVRRQMGNEIQAACGQL 336 Query: 366 KSL 368 K Sbjct: 337 KRR 339 >gi|54026096|ref|YP_120338.1| ribosomal RNA large subunit methyltransferase N [Nocardia farcinica IFM 10152] gi|81373742|sp|Q5YS67|RLMN_NOCFA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|54017604|dbj|BAD58974.1| hypothetical protein [Nocardia farcinica IFM 10152] Length = 369 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 123/373 (32%), Positives = 186/373 (49%), Gaps = 26/373 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + L + E+ A+ ++G+P + R QI + Y R D M+D+ VR Sbjct: 16 MPPRHLADLDAEQRRAAVAELGLP----KFRADQIARQYYGRLEADPARMTDLPAPVREQ 71 Query: 64 LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + ++V DG TRK L R G +E+V + R TLC+SSQ Sbjct: 72 IGAALFPRLLDVVKHVACDDGRTRKTLWR-----AGDGTLLESVLMRYADRNTLCISSQA 126 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RNL+ EI+ QV A + L D + ++SNI Sbjct: 127 GCGMACPFCATGQGGLNRNLSTAEIVDQVRAAAAALRD---------GAVAGGPGRLSNI 177 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239 V MGMGEPL N+ V ++ + GL S+R + +ST G P I ++ +E + V L Sbjct: 178 VFMGMGEPLANYKRVVAAVRRITAPAPDGLGISQRNVVVSTVGLAPAIRKLADEGLSVTL 237 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH ++LR+ LVP+N ++P+ ++DA R+Y + RR++ EY +++ IND P A Sbjct: 238 AVSLHTPDDELRDTLVPVNNRWPVAEVLDAARYYAD-TTGRRVSVEYALIRDINDQPWRA 296 Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L L G +N+IP NP PG ++ S + F + G +R RG Sbjct: 297 DMLGAKLHKALGSRVHVNVIPLNPTPGSKWDASPKPVEREFVRRVNEQGVPCTVRDTRGQ 356 Query: 357 DILAACGQLKSLS 369 +I AACGQL + + Sbjct: 357 EIAAACGQLAAEN 369 >gi|328475785|gb|EGF46521.1| ribosomal RNA large subunit methyltransferase N [Listeria monocytogenes 220] Length = 357 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 119/344 (34%), Positives = 197/344 (57%), Gaps = 26/344 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K S+ G+ +L E L G + R +Q+W W+Y + ++ F+ MS++ +E L Sbjct: 1 MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +F + E + S DGT K+L + + IETV + ++ ++CV++QVG Sbjct: 57 LTANFVMNTLEEQVVQESTDGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+LTA EI+ Q++ + + ++ ++S++V Sbjct: 112 CNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHY------------LDGRNLEERVSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242 +MG+GEP N+DNV L + + GL+ R IT+STSG P I E+ V LAIS Sbjct: 160 VMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLAIS 219 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR ++ IN+ Y +E L++A +Y +N RITFEY+MLKG+ND ++AL L Sbjct: 220 LHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTNR-RITFEYIMLKGVNDHKKEALEL 278 Query: 303 IKIL--KGIPAKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKR 343 +L A +NLIP+NP +Y S ++D++ F + +K+ Sbjct: 279 AALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKK 322 >gi|257464159|ref|ZP_05628540.1| florfenicol resistance protein [Fusobacterium sp. D12] gi|317061675|ref|ZP_07926160.1| radical SAM domain-containing protein [Fusobacterium sp. D12] gi|313687351|gb|EFS24186.1| radical SAM domain-containing protein [Fusobacterium sp. D12] Length = 349 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 130/372 (34%), Positives = 195/372 (52%), Gaps = 28/372 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K +L+ + ++EL E L+ G+ + +++ W++ + R+ Q M+++S + R + Sbjct: 1 MEKRNLLDLNQQELTELLVAEGM----KKFYGKEVFLWLHKKFARNIQEMTNLSLKHREI 56 Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQ 121 L + I Y ++ ++S D T K+L + IETV + + R TLC+SSQ Sbjct: 57 LEEKTYIPYLNLLKHQVSKIDKTEKFLFQLED-----GNTIETVLLRHRDQRNTLCISSQ 111 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC + C+FC TG VRNL EIL QV + G K++N Sbjct: 112 VGCPVKCTFCATGQDGFVRNLRVSEILNQVYTIER--------------RLNKRGEKLTN 157 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLA 240 +V MGMGEPL N D + K+L I S G+ SKR+IT+STSG VP I R + E+ V LA Sbjct: 158 LVFMGMGEPLINMDALMKALEILSCEEGICISKRKITISTSGIVPAIERILMEKTPVELA 217 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ISLH+ N+ R+ ++PIN+ YPLE L Y + R+TFEY+++K N S DA Sbjct: 218 ISLHSAINEKRDRIIPINKAYPLEDLSAVLLEYQRQTKR-RLTFEYILIKDFNVSEGDAN 276 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLDIL 359 L +NLIP NP +K I F E +K + +R +G DI Sbjct: 277 ALADFAHQFDHIVNLIPCNPVSETGLERPSEKKIERFYEYLKNVRKVNVSLRQEKGTDID 336 Query: 360 AACGQLKSLSKR 371 ACGQL+ ++ Sbjct: 337 GACGQLRQNQRK 348 >gi|225424671|ref|XP_002262749.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296086557|emb|CBI32146.3| unnamed protein product [Vitis vinifera] Length = 439 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 135/363 (37%), Positives = 196/363 (53%), Gaps = 26/363 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGI--RDFQGMSDISQEVRHL 63 K L GM EL+ + G M +WK +Y I + ++++ + + Sbjct: 78 KVLLKGMRYFELQNWVQSHGYRPGQALM----LWKRLYGNNIWAHCIDELEGLNKDFKSM 133 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQV 122 L++H + D + DGTRK L + IETV IP ++ R T+CVSSQV Sbjct: 134 LSEHAEFKALTLKDSIKASDGTRKILFTLDDGLV-----IETVIIPCDRGRNTVCVSSQV 188 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC++ C FCYTG L R+LTA EI+ Q + AR L G I+N+ Sbjct: 189 GCAMNCQFCYTGRMGLTRHLTAAEIVEQAVYARRLFSSEVGS--------------ITNV 234 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 V MGMGEP N ++V K+ I GL FS R++T+STSG VP + E LA+S Sbjct: 235 VFMGMGEPFHNIESVIKAADIMVHDQGLHFSPRKVTVSTSGLVPQLKHFLRESNCALAVS 294 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 L+A ++++RN ++PINRKY L +L+ R + ++ FEYVML G+NDS DA L Sbjct: 295 LNATTDEVRNWVMPINRKYNLSLLLQTLREELRSKHNYKVLFEYVMLAGVNDSLEDARRL 354 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 I +++GIP K+NLI FNP G ++ + ++ I+ F + +G +R RG D +AAC Sbjct: 355 IDLVQGIPCKVNLISFNPHCGSQFKPTSEEKIIEFRNILAEAGCIVFLRPSRGDDQMAAC 414 Query: 363 GQL 365 GQL Sbjct: 415 GQL 417 >gi|237745020|ref|ZP_04575501.1| radical SAM family enzyme [Fusobacterium sp. 7_1] gi|229432249|gb|EEO42461.1| radical SAM family enzyme [Fusobacterium sp. 7_1] Length = 358 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 131/380 (34%), Positives = 202/380 (53%), Gaps = 34/380 (8%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN +K +++ + +EEL E L+ +G+ + +++ W++ + R F M+++S + Sbjct: 1 MNN-EKINILNLTQEELTELLVSLGL----KKFYGKEVFIWLHKKITRSFDEMTNLSLKD 55 Query: 61 RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS------R 113 R +L + I + ++ +IS D T K+L + IETV + K R Sbjct: 56 REILKEKTYIPFFNLLKHQISKIDRTEKFLFELEDKGT-----IETVLLRHKDSKNKEIR 110 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 TLC+SSQVGC + CSFC TG +RNL+ EIL QV + Sbjct: 111 NTLCISSQVGCPVKCSFCATGQSGYMRNLSVSEILNQVYTVER--------------RLR 156 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VG 232 G ++N+V MGMGEPL N DN+ KSLSI S+ G++ SKR+IT+STSG V I + + Sbjct: 157 KKGETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGINISKRKITISTSGVVSGIEKILL 216 Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 ++I + LAISLH+ N+ R+ ++P+N+ +PLE L Y + RITFEY+++ Sbjct: 217 DKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLIEYQKQTKR-RITFEYILIDNF 275 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIR 351 N S DA L + +NLIP+N G E+ K I F +K + +R Sbjct: 276 NISETDANALADFVHQFDHVVNLIPYNEVEGVEHTRPSVKKIDKFYNYLKNVRRVNVTLR 335 Query: 352 TPRGLDILAACGQLKSLSKR 371 +G DI ACGQL+ +K+ Sbjct: 336 QEKGSDIDGACGQLRQRNKK 355 >gi|294785829|ref|ZP_06751117.1| radical SAM enzyme, Cfr family [Fusobacterium sp. 3_1_27] gi|294487543|gb|EFG34905.1| radical SAM enzyme, Cfr family [Fusobacterium sp. 3_1_27] Length = 358 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 130/380 (34%), Positives = 202/380 (53%), Gaps = 34/380 (8%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN +K +++ + +EEL E L+ +G+ + +++ W++ + R F M+++S + Sbjct: 1 MNN-EKINILNLTQEELTELLVSLGL----KKFYGKEVFIWLHKKITRSFDEMTNLSLKD 55 Query: 61 RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS------R 113 R +L + I + ++ ++S D T K+L + IETV + K R Sbjct: 56 REILKEKTYIPFFNLLKYQVSKIDKTEKFLFELEDKGT-----IETVLLRHKDSKNREIR 110 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 TLCVSSQVGC + CSFC TG +RNL+ EIL Q+ + Sbjct: 111 NTLCVSSQVGCPVKCSFCATGQSGYMRNLSVSEILNQIYTVER--------------RLR 156 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VG 232 G ++N+V MGMGEPL N DN+ KSLSI S+ G++ SKR+IT+STSG V I + + Sbjct: 157 KKGETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGVNISKRKITISTSGVVSGIEKILL 216 Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 ++I + LAISLH+ N+ R+ ++P+N+ +PLE L Y + RITFEY+++ Sbjct: 217 DKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLVEYQKQTKR-RITFEYILIDNF 275 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIR 351 N S DA L + +NLIP+N G E+ K I F +K + +R Sbjct: 276 NISETDANALADFIHQFDHVVNLIPYNEVEGVEHTRPSVKKIDKFYNYLKNIRKVNVTLR 335 Query: 352 TPRGLDILAACGQLKSLSKR 371 +G DI ACGQL+ +K+ Sbjct: 336 QEKGSDIDGACGQLRQRNKK 355 >gi|308178831|ref|YP_003918237.1| radical SAM enzyme [Arthrobacter arilaitensis Re117] gi|307746294|emb|CBT77266.1| radical SAM enzyme [Arthrobacter arilaitensis Re117] Length = 377 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 114/372 (30%), Positives = 177/372 (47%), Gaps = 23/372 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + E + L ++G+P R Q+ + D + MSD+ +E R L + Sbjct: 22 THLADLSLAERQAKLKELGLPA----FRAKQLSVHYFQHYTTDPEKMSDLPKERRAELAE 77 Query: 67 HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 V + DG T K+L R + +E+V + R TLC+SSQ GC Sbjct: 78 AMFPKLLTEVKRLETDDGKTIKFLWRLFDGSL-----VESVLMRYPGRITLCISSQCGCG 132 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG L RN++ EIL Q++ A ++ + ++ NIV M Sbjct: 133 MNCPFCATGQAGLTRNMSTAEILDQIVQANRVIAEGGLGGRQH------PDERVGNIVFM 186 Query: 186 GMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 GMGEPL N+ V ++ GL + R IT+ST G VP I ++ EE + V A+S Sbjct: 187 GMGEPLANYKRVMNAVHRMVADTPEGLGMAARGITVSTVGLVPAIRKLTEENVQVTFALS 246 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA ++LR+ L+P+N ++ ++ +DA Y + R++ EY ++K +ND A L Sbjct: 247 LHAPDDELRDELIPVNSRWKVDEALDAAYDYYVKTGR-RVSIEYALIKDMNDHEWRAEML 305 Query: 303 IKIL--KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 K L +G +N IP NP PG + S+ F + G + +R RG +I Sbjct: 306 AKKLNARGRGWVHVNPIPLNPVPGSIWTRSEPDITSKFVRRLDELGVPTTLRDTRGKEID 365 Query: 360 AACGQLKSLSKR 371 ACGQL + + Sbjct: 366 GACGQLAADGDK 377 >gi|297562607|ref|YP_003681581.1| radical SAM enzyme, Cfr family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847055|gb|ADH69075.1| radical SAM enzyme, Cfr family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 365 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 126/368 (34%), Positives = 188/368 (51%), Gaps = 25/368 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + +E E + ++G R Q+ + + + D M+D+ R L + Sbjct: 17 RHLADLSPDERAEVVRELG----EKPFRAKQLAQHYFGSLVSDTSAMTDLPASSRERLGE 72 Query: 67 HFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 V I+CD TRK L + V E+V + R TLC+SSQ GC Sbjct: 73 ALLPTLLTPV-RHITCDNGMTRKTLWK-----AFDGVLFESVLMRYPDRVTLCISSQAGC 126 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EI+ QV+ + D+ + +ISNIV Sbjct: 127 GMNCPFCATGQAGLTRNLSTGEIIDQVVASAR---------DLANGEVAGGPGRISNIVF 177 Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 MGMGEP+ N+ V +S+ +D GL S+R +T+ST G VP I ++ +E + V LAI Sbjct: 178 MGMGEPMANYKRVLQSVRRITDPVPNGLGISQRGVTVSTVGLVPAINKLIDERMQVRLAI 237 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++LR+ LVPIN ++ ++ ++DA Y G + RR++ EY ++K IND A Sbjct: 238 SLHAPDDELRDELVPINTRWKVDEVLDAAWRYAG-TTGRRVSIEYALIKDINDQAWRADL 296 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L K+LKG +NLIP NP PG ++ S +D F ++ G + +R RG +I A Sbjct: 297 LGKLLKGHLVHVNLIPLNPTPGSKWTASRPEDEREFVRRLESHGVAVTVRDTRGQEIDGA 356 Query: 362 CGQLKSLS 369 CGQL + Sbjct: 357 CGQLAAAE 364 >gi|255584867|ref|XP_002533149.1| catalytic, putative [Ricinus communis] gi|223527044|gb|EEF29230.1| catalytic, putative [Ricinus communis] Length = 420 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 121/374 (32%), Positives = 186/374 (49%), Gaps = 38/374 (10%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH- 67 L+GM EL++ G R Q+ IY R +++ Q S + Q R+ L + Sbjct: 58 LLGMSEPELQQLAADFG----QQSYRGKQLHHLIYQRKVKEIQDFSQLPQAFRNELQEAG 113 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVSSQV 122 + + I + DGT K L++ + IETV IP + R T C+SSQV Sbjct: 114 WRVGRSPIYRTVTAADGTVKLLIKLEDNRL-----IETVGIPIQDEKGPVRLTACISSQV 168 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L CSFC TG RNL EI+ QVL + +++N+ Sbjct: 169 GCPLRCSFCATGKGGYSRNLKRHEIVEQVLAIEEIFK-----------------NRVTNV 211 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAI 241 V MGMGEP+ N +V ++ + + +R IT+ST G I ++ ++ LA+ Sbjct: 212 VFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASHKLQSTLAL 269 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA + LR +VP + YPL+ ++ CR Y L +RR++FEY +L G+ND A Sbjct: 270 SLHAPNQKLRETIVPSAKSYPLDAIMKDCRDYF-LETSRRVSFEYALLAGVNDRAEHAKE 328 Query: 302 LIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L ++L G + +NLIPFNP G +Y +K + F+ ++ + +R RG+D Sbjct: 329 LAELLHEWGRGSHVNLIPFNPIEGSDYQRPSKKAVQAFAAALESRKITVSVRQTRGMDAS 388 Query: 360 AACGQLKSLSKRIP 373 AACGQL++ ++ P Sbjct: 389 AACGQLRNEFQKSP 402 >gi|33863770|ref|NP_895330.1| ribosomal RNA large subunit methyltransferase N [Prochlorococcus marinus str. MIT 9313] gi|81577096|sp|Q7V5P5|RLMN_PROMM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|33635353|emb|CAE21678.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9313] Length = 356 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 121/368 (32%), Positives = 185/368 (50%), Gaps = 37/368 (10%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++L+G ELE + G P R Q+ +W+Y +G R F+ ++ + + R L Q Sbjct: 11 QALLGCSATELEGWAVAEGQPA----FRGRQLHEWLYAKGARSFEAITVLPKSWRLSLQQ 66 Query: 67 H-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +I V+ ++ D T K LL IE+V IP + R T+C+SSQVGC Sbjct: 67 RGITIGRLLEVNRAVAVDDTTKLLL-----ATVDGETIESVGIPTQQRLTVCLSSQVGCP 121 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC +G L R+L EI+ QVL R + R+ S++V M Sbjct: 122 MACRFCASGKGGLQRSLATHEIVDQVLSLREAM-----------------DRRPSHVVFM 164 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIGVM 238 GMGEPL N + V ++ + L ++RRIT+ST G + + E Sbjct: 165 GMGEPLLNIEAVLAAIRCLNID--LGIAQRRITVSTVGVPHTLPHLAELAMKRLGRAQFT 222 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLHA + +LR L+P YP E L+ CRHY ++ R+TFEY++L +ND P+ Sbjct: 223 LAVSLHAPNQELRERLIPTACAYPFETLLQDCRHYLAVTGR-RVTFEYILLGALNDQPQH 281 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L ++G + +NLI +NP + + + I F +++ G + +R RGLD Sbjct: 282 AEELADRVRGFQSHVNLIAYNPIDDEGFQRPNPETIEAFRRVLEQRGVAVSLRASRGLDQ 341 Query: 359 LAACGQLK 366 AACGQL+ Sbjct: 342 NAACGQLR 349 >gi|256026775|ref|ZP_05440609.1| florfenicol resistance protein [Fusobacterium sp. D11] gi|289764771|ref|ZP_06524149.1| radical SAM family enzyme [Fusobacterium sp. D11] gi|289716326|gb|EFD80338.1| radical SAM family enzyme [Fusobacterium sp. D11] Length = 358 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 130/380 (34%), Positives = 202/380 (53%), Gaps = 34/380 (8%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN +K +++ + +EEL E L+ +G+ + +++ W++ + R F M+++S + Sbjct: 1 MNN-EKINILNLTQEELTELLVSLGL----KKFYGKEVFIWLHKKITRSFGEMTNLSLKD 55 Query: 61 RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS------R 113 R +L + I + ++ +IS D T K+L + IETV + K R Sbjct: 56 REILKEKTYIPFFNLLKHQISKIDRTEKFLFELEDKGT-----IETVLLRHKDSKNKEIR 110 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 TLCVSSQVGC + CSFC TG +RNL+ EIL Q+ + Sbjct: 111 NTLCVSSQVGCPVKCSFCATGQSGYMRNLSVSEILNQIYTIER--------------RLR 156 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VG 232 G ++N+V MGMGEPL N DN+ K+LSI S+ G++ SKR+IT+STSG V I + + Sbjct: 157 KKGETLNNLVFMGMGEPLLNIDNLSKALSIISNENGINISKRKITISTSGVVSGIEKILL 216 Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 ++I + LAISLH+ N+ R+ ++P+N+ +PLE L Y + RITFEY+++ Sbjct: 217 DKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLIEYQKQTKR-RITFEYILIDNF 275 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIR 351 N S DA L + +NLIP+N G E+ K I F +K + +R Sbjct: 276 NISETDANALADFVHQFDHVVNLIPYNEVEGVEHTRPSVKKIDKFYNYLKNVRKVNVTLR 335 Query: 352 TPRGLDILAACGQLKSLSKR 371 +G DI ACGQL+ +K+ Sbjct: 336 QEKGSDIDGACGQLRQRNKK 355 >gi|167753918|ref|ZP_02426045.1| hypothetical protein ALIPUT_02203 [Alistipes putredinis DSM 17216] gi|167658543|gb|EDS02673.1| hypothetical protein ALIPUT_02203 [Alistipes putredinis DSM 17216] Length = 344 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 123/361 (34%), Positives = 186/361 (51%), Gaps = 29/361 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L G +LE ++ +P R QI +W+Y + + MSD+S R LL + + Sbjct: 7 LYGQTLPQLEALCNRLEMP----RFAAKQIARWLYDKHATTIEAMSDLSARHRALLAETY 62 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 + IS DGT+K+L R IE+ YIP+ R TLC+SSQ GC + C Sbjct: 63 EVGLTAPEKVSISTDGTKKYLYRTSQNHF-----IESAYIPDGDRATLCISSQAGCRMGC 117 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG Q L +L+ EIL Q+ +++N+V MGMG Sbjct: 118 RFCATGRQGLQHSLSTNEILNQI-------------------ESLPERERLTNVVFMGMG 158 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN 248 EPL N D++ +L + + + G +S RIT+ST+G + R E V LA+SLH Sbjct: 159 EPLDNLDSLLPALEVLTSAWGFGWSPTRITVSTAGVASRLERFLEATQVHLAVSLHNPFP 218 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 R ++PI + +P+ +++ R Y ++ RR++FEY+++ G+NDSPR L ++L G Sbjct: 219 HERAEIMPIEKAWPIREVVEILRRY-DFTHQRRVSFEYIVMSGLNDSPRHIRELCRLLDG 277 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 I +INLI F+ PG Y D + ++ F + + G + IRT RG DI AACG L + Sbjct: 278 IKCRINLIRFHKIPGSPYFSPDDRAMIAFRDALTAKGIHTTIRTSRGEDIQAACGLLSTA 337 Query: 369 S 369 Sbjct: 338 Q 338 >gi|294674247|ref|YP_003574863.1| 23S rRNA m2A2503 methyltransferase [Prevotella ruminicola 23] gi|294472979|gb|ADE82368.1| 23S rRNA m2A2503 methyltransferase [Prevotella ruminicola 23] Length = 357 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 116/377 (30%), Positives = 193/377 (51%), Gaps = 40/377 (10%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K+ L+GM EL++ + ++G+P + +QI KW+Y + + M+++S+ R L Sbjct: 4 EKKVLLGMQPGELQQVVTELGMP----KFTAAQIAKWLYQQHVGSIADMTNLSKANREKL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-----------SR 113 + + + +D + S DGT K+L +ETVYIPE+ R Sbjct: 60 AEQYEVGSMAPIDCQRSVDGTIKYLF-----PTRSGKFVETVYIPERRRVGEQGSGIGDR 114 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 TLCVS QVGC + C FC TG Q +LTA +IL Q+ Sbjct: 115 ATLCVSCQVGCKMNCLFCQTGKQGFEGSLTAADILNQIYALPERD--------------- 159 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233 ++NIV MG GEP+ N D + ++ + + G ++S RRIT+S+ G + R + Sbjct: 160 ----TLTNIVFMGQGEPMDNLDAILQATQVLTADWGYAWSPRRITVSSVGVKNKLKRFLD 215 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 E +AIS+H+ + R +L+P ++ + +ID + Y S+ RR +FEY+ G+N Sbjct: 216 ESECHVAISMHSPLPEQRQMLMPAEKQMSITEVIDLLKQY-DFSHQRRCSFEYICFAGLN 274 Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353 D+ A ++K+++G+ ++NLI F+ PG + +D+K + + + G + IR Sbjct: 275 DTTMHAREIVKLVRGLDCRVNLIRFHEIPGVDLPGADEKRMEALRDYLTAHGVFTTIRAS 334 Query: 354 RGLDILAACGQLKSLSK 370 RG DI AACG L + K Sbjct: 335 RGQDIFAACGLLSTAKK 351 >gi|183601687|ref|ZP_02963057.1| hypothetical protein BIFLAC_03507 [Bifidobacterium animalis subsp. lactis HN019] gi|241190814|ref|YP_002968208.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196220|ref|YP_002969775.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219293|gb|EDT89934.1| hypothetical protein BIFLAC_03507 [Bifidobacterium animalis subsp. lactis HN019] gi|240249206|gb|ACS46146.1| hypothetical protein Balac_0778 [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250774|gb|ACS47713.1| hypothetical protein Balat_0778 [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793803|gb|ADG33338.1| hypothetical protein BalV_0750 [Bifidobacterium animalis subsp. lactis V9] Length = 398 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 120/366 (32%), Positives = 186/366 (50%), Gaps = 26/366 (7%) Query: 11 GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70 + +E ++G+P + R Q+ Y D +D R + + F Sbjct: 49 DLTDDERIAKAKELGLP----KFRVRQLANHYYGHFDADAGYFTDFPAGKRDEVAREFFP 104 Query: 71 IYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129 V +++ DG T K L +IE+V + +R TLC+SSQVGC + C Sbjct: 105 TLIREVTRQVADDGQTIKTLWELFD-----GSKIESVLMRYPNRTTLCISSQVGCGMGCP 159 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 FC TG L RN++ EIL QV +A +++ E + ++SN+V MGMGE Sbjct: 160 FCATGQLGLTRNMSTGEILEQVRIAAAMM---------ERGEVAGGPGRLSNVVFMGMGE 210 Query: 190 PLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 P+ N+ + ++ S G S R IT+ST G VP I R+ +E + V LA+SLHA Sbjct: 211 PMGNYRAIVSAVRQISAMPPEGFGISARNITVSTVGVVPGIRRLAQEGMPVRLAVSLHAP 270 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 +N LR+ LVP+NR++ ++ ++DA Y L++ RR++ EY +++GIND A L L Sbjct: 271 NNALRDELVPMNRRFNVDEVLDAAHDYY-LASKRRVSIEYALMRGINDQEIHARQLANRL 329 Query: 307 KGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 A +N IP NP G ++ S +D F E + +G ++ +R RG DI ACG Sbjct: 330 NHYGDNWAHVNPIPLNPIEGSKWTASKPEDERRFLEILHNAGITATLRDTRGQDIDGACG 389 Query: 364 QLKSLS 369 QL + + Sbjct: 390 QLAAKT 395 >gi|219683780|ref|YP_002470163.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium animalis subsp. lactis AD011] gi|219621430|gb|ACL29587.1| radical SAM enzyme, Cfr family protein [Bifidobacterium animalis subsp. lactis AD011] Length = 393 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 120/366 (32%), Positives = 186/366 (50%), Gaps = 26/366 (7%) Query: 11 GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70 + +E ++G+P + R Q+ Y D +D R + + F Sbjct: 44 DLTDDERIAKAKELGLP----KFRVRQLANHYYGHFDADAGYFTDFPAGKRDEVAREFFP 99 Query: 71 IYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129 V +++ DG T K L +IE+V + +R TLC+SSQVGC + C Sbjct: 100 TLIREVTRQVADDGQTIKTLWELFD-----GSKIESVLMRYPNRTTLCISSQVGCGMGCP 154 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 FC TG L RN++ EIL QV +A +++ E + ++SN+V MGMGE Sbjct: 155 FCATGQLGLTRNMSTGEILEQVRIAAAMM---------ERGEVAGGPGRLSNVVFMGMGE 205 Query: 190 PLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 P+ N+ + ++ S G S R IT+ST G VP I R+ +E + V LA+SLHA Sbjct: 206 PMGNYRAIVSAVRQISAMPPEGFGISARNITVSTVGVVPGIRRLAQEGMPVRLAVSLHAP 265 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 +N LR+ LVP+NR++ ++ ++DA Y L++ RR++ EY +++GIND A L L Sbjct: 266 NNALRDELVPMNRRFNVDEVLDAAHDYY-LASKRRVSIEYALMRGINDQEIHARQLANRL 324 Query: 307 KGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 A +N IP NP G ++ S +D F E + +G ++ +R RG DI ACG Sbjct: 325 NHYGDNWAHVNPIPLNPIEGSKWTASKPEDERRFLEILHNAGITATLRDTRGQDIDGACG 384 Query: 364 QLKSLS 369 QL + + Sbjct: 385 QLAAKT 390 >gi|308234069|ref|ZP_07664806.1| 23S rRNA m(2)A-2503 methyltransferase [Atopobium vaginae DSM 15829] gi|328943466|ref|ZP_08240931.1| cfr family radical SAM enzyme [Atopobium vaginae DSM 15829] gi|327491435|gb|EGF23209.1| cfr family radical SAM enzyme [Atopobium vaginae DSM 15829] Length = 416 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 118/372 (31%), Positives = 190/372 (51%), Gaps = 28/372 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K + + ++L L +G P R QI W++ + R F M+++S+++R L Sbjct: 72 QKVEIRSLNHDQLTYELTSMGEPA----FRVKQIEAWLWQKNARSFDDMTNLSKKLRARL 127 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F++ P +V +++S DG+RK+LLRF V E V +P K++ +CVS+Q GC Sbjct: 128 KEKFALYSPALVSKQVSQDGSRKYLLRFQD-----GVMAECVGMPTKNKLAICVSTQAGC 182 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 ++ C FC TG L R+LT EI Q L + ++++ V+ Sbjct: 183 AIGCVFCATGKAGLTRSLTGYEIYEQALFIQD-----------------DFQMRVASAVL 225 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG GEPL N++ +L + + ++GL R +T+ST G +PNI + E LA+SL Sbjct: 226 MGQGEPLTNYNASIFALKMMNSAIGLGVGARHLTISTCGILPNIIKFSHEKEQFTLAVSL 285 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ R+ L+P +++ L+ L D Y + R T+EY ++KG+ND+ + L Sbjct: 286 HSAVQSTRDYLMPGVKRFNLQHLHDTMNLYVEATGR-RPTYEYALIKGVNDTDEELAALC 344 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 G A +NLI N +L + +K F + +KR G + IR RG DI AACG Sbjct: 345 DFCAGTLAHVNLIQLNKIDDSPFLPTSEKRAEHFVKTLKRFGVEATIRHSRGADIDAACG 404 Query: 364 QLKSLSKRIPKV 375 QLK +V Sbjct: 405 QLKQKVVGKKRV 416 >gi|256420250|ref|YP_003120903.1| radical SAM enzyme, Cfr family [Chitinophaga pinensis DSM 2588] gi|256035158|gb|ACU58702.1| radical SAM enzyme, Cfr family [Chitinophaga pinensis DSM 2588] Length = 347 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 126/365 (34%), Positives = 198/365 (54%), Gaps = 25/365 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K ++ + EL++ I R Q+++W++++ F M++IS+++R L Sbjct: 5 KTNIRHLSLPELQKYFGSI----EEKPFRAKQVYEWLWLKHATSFDAMTNISKDLRSKLE 60 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +HF++ + S DGT K R +E V IP +R T CVSSQVGCS Sbjct: 61 EHFTLPAITTDTTQHSDDGTIKSRFRLHD-----GHMVEGVLIPTDTRQTACVSSQVGCS 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L+C FC TG RNL +EI +V L + + G+K+SNIV M Sbjct: 116 LSCKFCATGYMDRKRNLDFDEIYDEVALLNQQAME-------------AYGKKLSNIVYM 162 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 GMGEPL N+ NV +S+ + GL S RRIT+ST+G I ++G++ + LA+SLH Sbjct: 163 GMGEPLLNYKNVLQSIERITSPDGLGMSPRRITVSTAGVAKMIRQLGDDKVKFNLALSLH 222 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A +++ R+ ++PIN L++LI+A Y +I+FEY++ K NDS +DA LI+ Sbjct: 223 AANDEKRSQIMPINDTNNLKVLIEALN-YFYKETQNQISFEYILFKDFNDSFKDAEELIR 281 Query: 305 ILKGIPA-KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 I + +PA +N+I +NP ++ D+ F E + ++ ++ +R RG DI AACG Sbjct: 282 IYRQVPADLVNIIEYNPISNARFMKPDEDVAEAFMEYLSKNRVNARLRRSRGKDIDAACG 341 Query: 364 QLKSL 368 QL + Sbjct: 342 QLANK 346 >gi|329120993|ref|ZP_08249624.1| cfr family radical SAM enzyme [Dialister micraerophilus DSM 19965] gi|327471155|gb|EGF16609.1| cfr family radical SAM enzyme [Dialister micraerophilus DSM 19965] Length = 344 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 126/363 (34%), Positives = 195/363 (53%), Gaps = 29/363 (7%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 + G +ELEE + P + R QI ++Y R I F M + + +R L ++ Sbjct: 4 DIWGKSLKELEEYITLNNFP----KFRAKQIHDYLYHRCIFTFDEMKQLPKNMREWLKEN 59 Query: 68 FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 SI PE+++ S DG T K L + + ETV + K ++CVS+Q+GC++ Sbjct: 60 ASIYIPEVINSIQSNDGNTTKILFKLKDGSLA-----ETVCMHHKYGNSICVSTQIGCAM 114 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC + L RNLT E+L QV + L + +IV+MG Sbjct: 115 GCIFCASTRNGLERNLTFGEMLSQVYAFKKLK-----------------NISVHSIVLMG 157 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHA 245 GEPL N++N K + + +DS L+ S R ITLST G VP I R+ E + + LAISLHA Sbjct: 158 AGEPLTNYENCLKFIKLCNDSSILNISYRNITLSTCGIVPQIYRLEKENLPITLAISLHA 217 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ +RN ++P ++ + +E +I A +HY + RITFEY+++KGIN +P+ A+ L K+ Sbjct: 218 PNDKIRNEILPSSKHFKIEDVIRASKHYFENTGR-RITFEYILIKGINAAPKHAVELAKL 276 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + + INLIP N + +K+I F + +++ G S+ +R G +I AACGQL Sbjct: 277 IGNLNCHINLIPVNGTEHIQLFAPSKKEIFEFQQILEKMGKSATVRRQMGNEIQAACGQL 336 Query: 366 KSL 368 K Sbjct: 337 KRR 339 >gi|157364703|ref|YP_001471470.1| ribosomal RNA large subunit methyltransferase N [Thermotoga lettingae TMO] gi|205829915|sp|A8F8C2|RLMN_THELT RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|157315307|gb|ABV34406.1| radical SAM enzyme, Cfr family [Thermotoga lettingae TMO] Length = 343 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 130/361 (36%), Positives = 199/361 (55%), Gaps = 30/361 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +++ M E+ + + ++G+ + R QI WIY + + F+ M+++S++ R LL ++ Sbjct: 2 NILSMTYEKFVQKIQELGLE----KYRADQILDWIYKKHVFVFEQMTNLSKQHRSLLREN 57 Query: 68 FSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 F I P+IV +++S D T K+L IE+V + + T C+S+Q+GC + Sbjct: 58 FCIQIPKIVSKRVSSIDKTTKYLYELSD-----GNTIESVLLFHEGYATACISTQIGCPV 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 CSFC TG VRNL A EI+ Q+L + + NIV MG Sbjct: 113 KCSFCATGQSGFVRNLDAGEIVSQILAIEK-----------------DSKQTVRNIVYMG 155 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 MGEPL N+DNV KS+ I D + RR+TLST G I ++ EE + + LAISLHA Sbjct: 156 MGEPLLNYDNVIKSIKILIDKKTKNIGIRRVTLSTVGIPEMILKLSEERLDLNLAISLHA 215 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +N+ R+ ++PINRKY ++ +I+A ++Y S+ R+T EY+++K ND DA L K+ Sbjct: 216 STNEKRDQIIPINRKYSIQEIINAAKNYQERSDR-RLTIEYILIKEFNDFDEDARKLAKL 274 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L G+ +NLIP N + + I F E + SG + IR +G DI AACGQL Sbjct: 275 LNGLKVFVNLIPVNST-FSNFEKPAKWKINRFKEILINSGIEAEIRYEKGADIEAACGQL 333 Query: 366 K 366 + Sbjct: 334 R 334 >gi|168059243|ref|XP_001781613.1| predicted protein [Physcomitrella patens subsp. patens] gi|162666927|gb|EDQ53569.1| predicted protein [Physcomitrella patens subsp. patens] Length = 390 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 128/374 (34%), Positives = 199/374 (53%), Gaps = 38/374 (10%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH- 67 LIG +EELE+ +L +G + R Q+++ IY I+ + ++ + +++R+ + + Sbjct: 35 LIGKTQEELEDIVLSLG----EQKYRGKQMYQLIYKNKIKTVKELAQLPKQLRNAMTEAG 90 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVSSQV 122 +SI I S DGT K LL+ + +E V IP K R T+CVSSQV Sbjct: 91 WSIGRSPIHHVSTSKDGTVKILLKLEDNRL-----VEAVGIPVKDKEGNQRLTVCVSSQV 145 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L C+FC TG RNL A EI+ QVL L +++NI Sbjct: 146 GCALRCAFCATGKGGFARNLKAHEIVDQVLSIEDLFRQ-----------------RVTNI 188 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAI 241 V MGMGEPL N DNV + + L +R +T+ST G I R+ ++ LAI Sbjct: 189 VFMGMGEPLMNLDNVLDAHRTINKE--LQIGQRMMTISTVGVPNTIRRLATHKLQSTLAI 246 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA + +LR+ +VP + YPL+ L++ C++Y + RR++FEY +L G+ND A Sbjct: 247 SLHAPNQELRSRIVPSAKGYPLDALMEDCKYYFE-TTGRRLSFEYTLLAGVNDQREHAEE 305 Query: 302 LIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L +L + +N+IP+NP E+ + ++ F E + + ++ +R RGLD Sbjct: 306 LATLLHQWNLGRHVNIIPYNPIADSEFERPTKAKVLAFVETLSKRRVTASVRVTRGLDAN 365 Query: 360 AACGQLKSLSKRIP 373 AACGQL++ ++IP Sbjct: 366 AACGQLRNEFQKIP 379 >gi|307297434|ref|ZP_07577240.1| radical SAM enzyme, Cfr family [Thermotogales bacterium mesG1.Ag.4.2] gi|306916694|gb|EFN47076.1| radical SAM enzyme, Cfr family [Thermotogales bacterium mesG1.Ag.4.2] Length = 339 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 132/365 (36%), Positives = 199/365 (54%), Gaps = 29/365 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + ++ + +EL ++ G R +QI+KW+Y + + DF M+D+ +R+ L Sbjct: 2 KDILSLDLDELRREIISFG----EKDYRANQIFKWVYAKRVLDFSEMTDLPMNLRNKLGS 57 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 F + V+ +IS DGT K+LL+ IETV + T C+SSQVGC+L Sbjct: 58 LFRFTTMKEVERQISIDGTEKFLLKLEDDNH-----IETVVLKHPRHVTFCISSQVGCAL 112 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 CSFC TG R+L+A EI+ QV+L S+GR + NIV MG Sbjct: 113 NCSFCATGASGFTRDLSASEIVSQVILME-----------------NSIGRPVDNIVFMG 155 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 MGEP N NV K++ I D +G + R T+ST+G I R+ + + V L++SLH+ Sbjct: 156 MGEPFLNEANVYKAIKILHDPVGRNLGIRHFTISTAGIPEGIKRLADSGMDVRLSVSLHS 215 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 S + R+ L+PIN+KYPL+ L +Y + RITFEY ++KG+NDS D L + Sbjct: 216 ASEETRSSLMPINKKYPLDSLRKVLDYYQQKT-GNRITFEYALIKGVNDSKEDLTKLGEF 274 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L GI + +N+IP NP + ++I FSE +K++G+ +R +G DI AACGQL Sbjct: 275 LTGIKSFVNIIPVNPVKPV-FDRPSDREIAVFSESLKKAGFECAVRHEKGTDIEAACGQL 333 Query: 366 KSLSK 370 + + Sbjct: 334 RQKRR 338 >gi|218189834|gb|EEC72261.1| hypothetical protein OsI_05406 [Oryza sativa Indica Group] Length = 395 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 123/374 (32%), Positives = 183/374 (48%), Gaps = 38/374 (10%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-NQH 67 L+G+ +L + + +G R Q+ +Y + Q S + + R L Sbjct: 36 LLGLSEPDLRQLAVDLG----QQSYRGKQLHDLLYKSRAKQIQEFSHVPKVFREALVGAG 91 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVSSQV 122 + + + + DGT K LL+ + IETV IP R T CVSSQV Sbjct: 92 WKVGRSPVHHAVTASDGTTKILLKLEDNRL-----IETVGIPVDDDKGPSRLTACVSSQV 146 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L CSFC TG RNL A EI+ QVL + +++N+ Sbjct: 147 GCPLRCSFCATGKGGFARNLHAHEIVEQVLAIEE-----------------TFQHRVTNV 189 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAI 241 V MGMGEP+ N +V ++ + L +R IT+ST G I ++ ++ LA+ Sbjct: 190 VFMGMGEPMLNLKSVLEAHRCLNKE--LKIGQRMITISTVGVPNTIKKLASHKLQSTLAV 247 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA + LR +VP + YPLE L+D C++Y L RR++FEY +L GIND+ A Sbjct: 248 SLHAPNQKLRETIVPSAKSYPLEALMDDCKNYF-LETGRRVSFEYTLLAGINDAKEHAEE 306 Query: 302 LIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L ++L G +NLIP+NP G EY +K + F + ++ + +R RGLD Sbjct: 307 LAELLHTCGGGYHVNLIPYNPIQGSEYKRPYRKVVQAFVDALEARKITVSVRQTRGLDAN 366 Query: 360 AACGQLKSLSKRIP 373 AACGQL++ ++ P Sbjct: 367 AACGQLRNEFQKNP 380 >gi|300933099|ref|ZP_07148355.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium resistens DSM 45100] Length = 371 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 119/370 (32%), Positives = 192/370 (51%), Gaps = 26/370 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L M REE++EA+ ++G+P + R Q+ + Y R + D + M+D+ + R + + Sbjct: 19 VHLADMSREEVKEAVAELGLP----KFRADQLARQYYGRLLADPEEMTDLPENKRGPVRE 74 Query: 67 HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + DG TRK L R + +E+V + R TLC+SSQ GC Sbjct: 75 ALFPQLMTPLRHLNTDDGETRKTLWRLFDGTL-----LESVLMRYPGRATLCISSQAGCG 129 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG L RNL+ E++ QV A + + D + ++SNIV M Sbjct: 130 MACPFCATGQGGLDRNLSVGEMVEQVRHAAAAMRD---------GEVEGGEGRLSNIVFM 180 Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 GMGEPL N+ V ++ + G S+R +T+ST G P I ++ +E + V LA+S Sbjct: 181 GMGEPLANYKRVVDTIRKITSPPPEGFGISQRNVTVSTVGLAPAIRKLADEGMTVRLAVS 240 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LH ++LR+ LVP+N ++ ++ ++DA R+Y S R++ EY +++ +ND P A L Sbjct: 241 LHTPDDELRDELVPVNNRWSVDEVLDAARYYADTSGR-RVSIEYALIRDMNDQPWRADLL 299 Query: 303 IKILKG---IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 K L+G +N+IP NP PG ++ S + F ++ G +R +G +I Sbjct: 300 GKKLRGALGSKVHVNVIPLNPTPGSKWDASPKAVQDEFVRRVEAQGVPCTVRDTKGQEIA 359 Query: 360 AACGQLKSLS 369 AACGQL + Sbjct: 360 AACGQLAAEE 369 >gi|297598414|ref|NP_001045547.2| Os01g0973400 [Oryza sativa Japonica Group] gi|57899226|dbj|BAD87375.1| radical SAM domain-containing protein-like [Oryza sativa Japonica Group] gi|57899699|dbj|BAD87419.1| radical SAM domain-containing protein-like [Oryza sativa Japonica Group] gi|215697144|dbj|BAG91138.1| unnamed protein product [Oryza sativa Japonica Group] gi|215708729|dbj|BAG93998.1| unnamed protein product [Oryza sativa Japonica Group] gi|215740846|dbj|BAG97002.1| unnamed protein product [Oryza sativa Japonica Group] gi|215765571|dbj|BAG87268.1| unnamed protein product [Oryza sativa Japonica Group] gi|255674123|dbj|BAF07461.2| Os01g0973400 [Oryza sativa Japonica Group] Length = 397 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 123/374 (32%), Positives = 183/374 (48%), Gaps = 38/374 (10%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-NQH 67 L+G+ +L + + +G R Q+ +Y + Q S + + R L Sbjct: 38 LLGLSEPDLRQLAVDLG----QQSYRGKQLHDLLYKSRAKQIQEFSHVPKVFREALVGAG 93 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVSSQV 122 + + + + DGT K LL+ + IETV IP R T CVSSQV Sbjct: 94 WKVGRSPVHHAVTASDGTTKILLKLEDNRL-----IETVGIPVDDDKGPSRLTACVSSQV 148 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L CSFC TG RNL A EI+ QVL + +++N+ Sbjct: 149 GCPLRCSFCATGKGGFARNLHAHEIVEQVLAIEE-----------------TFQHRVTNV 191 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAI 241 V MGMGEP+ N +V ++ + L +R IT+ST G I ++ ++ LA+ Sbjct: 192 VFMGMGEPMLNLKSVLEAHRCLNKE--LKIGQRMITISTVGVPSTIKKLASHKLQSTLAV 249 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA + LR +VP + YPLE L+D C++Y L RR++FEY +L GIND+ A Sbjct: 250 SLHAPNQKLRETIVPSAKSYPLEALMDDCKNYF-LETGRRVSFEYTLLAGINDAKEHAEE 308 Query: 302 LIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L ++L G +NLIP+NP G EY +K + F + ++ + +R RGLD Sbjct: 309 LAELLHTCGGGYHVNLIPYNPIQGSEYKRPYRKVVQAFVDALEARKITVSVRQTRGLDAN 368 Query: 360 AACGQLKSLSKRIP 373 AACGQL++ ++ P Sbjct: 369 AACGQLRNEFQKNP 382 >gi|289178553|gb|ADC85799.1| Radical SAM family enzyme [Bifidobacterium animalis subsp. lactis BB-12] Length = 430 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 120/366 (32%), Positives = 186/366 (50%), Gaps = 26/366 (7%) Query: 11 GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70 + +E ++G+P + R Q+ Y D +D R + + F Sbjct: 81 DLTDDERIAKAKELGLP----KFRVRQLANHYYGHFDADAGYFTDFPAGKRDEVAREFFP 136 Query: 71 IYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129 V +++ DG T K L +IE+V + +R TLC+SSQVGC + C Sbjct: 137 TLIREVTRQVADDGQTIKTLWELFD-----GSKIESVLMRYPNRTTLCISSQVGCGMGCP 191 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 FC TG L RN++ EIL QV +A +++ E + ++SN+V MGMGE Sbjct: 192 FCATGQLGLTRNMSTGEILEQVRIAAAMM---------ERGEVAGGPGRLSNVVFMGMGE 242 Query: 190 PLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 P+ N+ + ++ S G S R IT+ST G VP I R+ +E + V LA+SLHA Sbjct: 243 PMGNYRAIVSAVRQISAMPPEGFGISARNITVSTVGVVPGIRRLAQEGMPVRLAVSLHAP 302 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 +N LR+ LVP+NR++ ++ ++DA Y L++ RR++ EY +++GIND A L L Sbjct: 303 NNALRDELVPMNRRFNVDEVLDAAHDYY-LASKRRVSIEYALMRGINDQEIHARQLANRL 361 Query: 307 KGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 A +N IP NP G ++ S +D F E + +G ++ +R RG DI ACG Sbjct: 362 NHYGDNWAHVNPIPLNPIEGSKWTASKPEDERRFLEILHNAGITATLRDTRGQDIDGACG 421 Query: 364 QLKSLS 369 QL + + Sbjct: 422 QLAAKT 427 >gi|262202048|ref|YP_003273256.1| radical SAM protein [Gordonia bronchialis DSM 43247] gi|262085395|gb|ACY21363.1| radical SAM enzyme, Cfr family [Gordonia bronchialis DSM 43247] Length = 368 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 122/367 (33%), Positives = 184/367 (50%), Gaps = 27/367 (7%) Query: 11 GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70 + + A+ ++G+P + R +Q+ + Y R D M+D+ R + Sbjct: 22 DLDAQARVAAVAELGLP----KFRANQLARQYYARLNGDVAEMTDLPASARDSVGAALFP 77 Query: 71 IYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129 V DG TRK L R + +E+V + R TLC+SSQ GC + C Sbjct: 78 PLLTPVRHISCDDGSTRKTLWRLHDGTL-----LESVLMRYPDRNTLCISSQAGCGMACP 132 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 FC TG L RNL+ EI+ QV A L D E ++SN+V MGMGE Sbjct: 133 FCATGQGGLDRNLSTAEIVDQVRCAARSLRDGEFGEPG----------RLSNVVFMGMGE 182 Query: 190 PLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 PL N+ V ++ + GL S R +T+ST G P+I R+ +E + V LA+SLH Sbjct: 183 PLANYTRVVSAVRQITSPAPDGLGISARSVTVSTVGLAPSIRRLADEGLAVTLAVSLHTP 242 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++LR+ LVP+N ++ ++ ++DA R+Y + RR++ EY +++ +ND P A L K L Sbjct: 243 DDELRDTLVPVNNRWSVQEVLDAARYYAD-TTGRRVSIEYALIRDVNDQPWRADMLGKKL 301 Query: 307 K---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 G +NLIP NP PG E+ S + F ++ G S +R RG +I AACG Sbjct: 302 HKALGSRVHVNLIPLNPTPGSEWDASPKPVEREFVRRVREQGVSCTVRDTRGQEIAAACG 361 Query: 364 QLKSLSK 370 QL + + Sbjct: 362 QLAAEER 368 >gi|313672236|ref|YP_004050347.1| 23S rRNA m(2)a-2503 methyltransferase [Calditerrivibrio nitroreducens DSM 19672] gi|312938992|gb|ADR18184.1| 23S rRNA m(2)A-2503 methyltransferase [Calditerrivibrio nitroreducens DSM 19672] Length = 350 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 130/370 (35%), Positives = 217/370 (58%), Gaps = 28/370 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K M+ EEL++ +++ G R Q++KWI+ +G++DF M+D+S E+R Sbjct: 1 MIKID--SMLLEELKDFMVEQG----EKSFRGEQVYKWIFQKGVKDFSQMTDLSVELRGK 54 Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L + S Y + ++ K DG++K+L + +IE+V + ++ R TLCVS+QV Sbjct: 55 LQNNASFTYLKPIEIKRDEYDGSQKFLFELEDKN-----KIESVALKDQDRITLCVSTQV 109 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C+FC T +R+LTA EI+ Q++ + + K++NI Sbjct: 110 GCRMGCAFCATAKIGFIRDLTAGEIVRQIMEVNEH--------------LATNSEKVTNI 155 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241 V MGMGEPL N+ NV K++ I +D MGL +S R++T+STSG V I + + + V LA+ Sbjct: 156 VFMGMGEPLDNYHNVVKAIGIITDEMGLGYSHRKVTVSTSGVVDRIDELFKLKKQVNLAV 215 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SL+A ++D+R+ ++PIN+K+ +E L+ + P + +RIT EYVM+KG+ND+ DA Sbjct: 216 SLNATTDDIRSAIMPINKKFNIEKLMKKLKSLP-IQKRKRITIEYVMIKGVNDTLDDAKR 274 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L+++L G+P KINLI +N Y D++ +++F + + ++ IR G +I A Sbjct: 275 LVRLLNGLPIKINLIAYNDGGNENYRAPDEQTVLSFQKYLVDKHITAFIRKSLGKNIEGA 334 Query: 362 CGQLKSLSKR 371 CGQL + + Sbjct: 335 CGQLYAKYNK 344 >gi|237753454|ref|ZP_04583934.1| conserved hypothetical protein [Helicobacter winghamensis ATCC BAA-430] gi|229375721|gb|EEO25812.1| conserved hypothetical protein [Helicobacter winghamensis ATCC BAA-430] Length = 354 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 133/366 (36%), Positives = 197/366 (53%), Gaps = 26/366 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+++ L L G + R QI+ W+Y+R + DF+ M ++ +E++ L Sbjct: 2 KDNIFSYSLNALGLKLESAGF----QKFRAKQIYHWLYIRYVEDFEAMDNLPKELKTYLK 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-SRGTLCVSSQVGC 124 + F+ +I ++ S DG+ K+L + E V++ K + TLC+SSQVGC Sbjct: 58 ETFTTTSAQICKQEKSLDGSVKYLFQAQDNLT-----YEAVFLKMKEDKFTLCLSSQVGC 112 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + CSFC T VRNL+ EI+ QVL + K NIV Sbjct: 113 KVGCSFCLTAKGGFVRNLSTGEIVYQVLAIKKAQNI--------------PHNKAINIVY 158 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243 MGMGEPL N DNV ++ I ++ GLS S RR T+STSG P I ++G +GV LAISL Sbjct: 159 MGMGEPLDNLDNVTNTIKILAELDGLSISTRRQTISTSGIAPKIKKLGTLNLGVQLAISL 218 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HAV + LR+ L+PIN+ Y ++ +ID +P + + +R+ FEY+++ G+ND A L+ Sbjct: 219 HAVDDKLRSELMPINKAYNIQAVIDEVVQFP-IDSRKRVMFEYLVIDGLNDGLDSAKKLV 277 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +L + AK+NLI FNP G Y + + F E + + G IR +GLDI AACG Sbjct: 278 ALLNKLKAKVNLIYFNPHEGSIYKRPSAEKVEAFREFLLKKGLLCTIRESKGLDISAACG 337 Query: 364 QLKSLS 369 QL+ Sbjct: 338 QLRERE 343 >gi|161528893|ref|YP_001582719.1| radical SAM protein [Nitrosopumilus maritimus SCM1] gi|205829829|sp|A9A3L9|RLMN_NITMS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|160340194|gb|ABX13281.1| radical SAM enzyme, Cfr family [Nitrosopumilus maritimus SCM1] Length = 351 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 117/371 (31%), Positives = 196/371 (52%), Gaps = 35/371 (9%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L ++ EE+E+ ++ +G R R QI +Y + +D + + +++R + Sbjct: 2 TDLYRLLPEEMEKLVIDMGYD----RYRADQILLPLYYKFPKDINDIPQLPKKLREEFTE 57 Query: 67 H-FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPE-------KSRGTLC 117 ++I + + +S DG T K LL +ETV + R T+C Sbjct: 58 AGYTIGSAKEIHRVVSDDGDTTKLLLELSD-----GSSVETVLMQYEPTKIGGHPRSTIC 112 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 VS+Q+GC++ C FC TG NL AE I+ QV+ LL G Sbjct: 113 VSTQIGCAMGCVFCATGQMGFETNLKAEHIVSQVIHFAELLEQ--------------RGE 158 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IG 236 ++N+V MGMGEP+ N+D + +++ I + G +R IT+ST G I ++ EE + Sbjct: 159 HVTNLVFMGMGEPMANYDEMIRAVKILTHDRGFGLGQRHITISTIGITSGIEKLAEENLQ 218 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 + LAISLHA +N+LR LVP +E +I + R Y + R+TFEY +++G+NDSP Sbjct: 219 IGLAISLHAPNNELRKKLVPTAGPNSVEDIIKSGRDYFKKTGR-RVTFEYALMEGVNDSP 277 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 A L ++L+G + +N+IP NP G ++ +K+++ F + +++SG + +R +G Sbjct: 278 EIAHELARLLRGNGSHVNIIPINPTAG-DFKRPSEKNVLEFEQILRKSGVNCTVRVEKGT 336 Query: 357 DILAACGQLKS 367 +I AACGQL++ Sbjct: 337 EISAACGQLRT 347 >gi|309389025|gb|ADO76905.1| 23S rRNA m(2)A-2503 methyltransferase [Halanaerobium praevalens DSM 2228] Length = 347 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 132/367 (35%), Positives = 200/367 (54%), Gaps = 24/367 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + L + R EL E L K G P R Q++ W+Y GI + M +I +++R L+ Sbjct: 2 KDLKELTRNELIEDLKKAGFPA----YRGEQVFNWLYKNGISKTEEMKNIPKKMRSYLDN 57 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS--RGTLCVSSQVGC 124 ++++ + ++ DGT K+L + IE VY+P R + C+S+QVGC Sbjct: 58 NYNLNNLKESKRSVAVDGTVKYLWQLND-----GENIEGVYLPFPESGRHSACISTQVGC 112 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 L CSFC TG L RNLT EI+ QVL + + ++SN+V Sbjct: 113 GLGCSFCATGIDGLKRNLTTGEIVEQVLEIQK-----------DISGSNFAEPRLSNLVF 161 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243 MGMGEPL NFDN+ +++ I + + GL+ R++T+ST+G VP I ++ + + LAISL Sbjct: 162 MGMGEPLANFDNLMQAVEILNSNQGLNIGMRKMTISTAGLVPEIKKLAKVNDQIGLAISL 221 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA ++ LRN ++PIN+KY + L+ Y + R+TFEYV++ +NDSP ++ L Sbjct: 222 HAPNDRLRNKIMPINKKYNINQLLKTVIDYIEKTGR-RVTFEYVLMDSVNDSPELSVQLS 280 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++L+GI +NLIP NP P QK I +F + + +G +R G I AACG Sbjct: 281 ELLRGINCHVNLIPANPVPELGIERPVQKVIDSFYDTLVNNGIQVSLRKEMGSQIEAACG 340 Query: 364 QLKSLSK 370 QLK K Sbjct: 341 QLKRKEK 347 >gi|25028463|ref|NP_738517.1| hypothetical protein CE1907 [Corynebacterium efficiens YS-314] gi|81749328|sp|Q8FP78|RLMN_COREF RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|23493748|dbj|BAC18717.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length = 369 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 116/378 (30%), Positives = 184/378 (48%), Gaps = 31/378 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + + E+ EAL ++G+P + R +QI + Y R D M+D+ + R Sbjct: 16 MPPAHFADLSDEQRIEALSELGLP----KFRLNQIARHYYGRLEADPMTMTDLPEAARAK 71 Query: 64 LNQHFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + E + + D T+K L + + +E+V + R TLC+SSQ Sbjct: 72 VKDALFPTLMEPIRVVEADDENTQKTLWKLHDGTL-----LESVLMRYPDRATLCISSQA 126 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RNL+ EI+ QV A + + G ++SNI Sbjct: 127 GCGMACPFCATGQGGLDRNLSVGEIVDQVRNAA--------------ATMQAEGGRLSNI 172 Query: 183 VMMGMGEPLCNFDNVKKSLSIAS--DSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239 V MGMGEPL N+ V ++ + G S+R +T+ST G P I ++ +E + V L Sbjct: 173 VFMGMGEPLANYKRVVSAVRQITQPSPEGFGISQRSVTVSTVGLAPAIRKLADEDMSVTL 232 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH ++LR+ LVP+N ++ + ++DA R+Y S R++ EY +++ +ND A Sbjct: 233 AVSLHTPDDELRDELVPVNNRWSVAEVLDAARYYADKSGR-RVSIEYALIRDVNDQGWRA 291 Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L + L G +NLIP NP PG ++ S ++ F + G +R +G Sbjct: 292 DMLGQKLHKALGSRVHVNLIPLNPTPGSKWDASPRERQDEFVRRVIAQGVPCTVRDTKGQ 351 Query: 357 DILAACGQLKSLSKRIPK 374 +I AACGQL + K Sbjct: 352 EIAAACGQLAAEENSEEK 369 >gi|325282884|ref|YP_004255425.1| Ribosomal RNA large subunit methyltransferase N [Deinococcus proteolyticus MRP] gi|324314693|gb|ADY25808.1| Ribosomal RNA large subunit methyltransferase N [Deinococcus proteolyticus MRP] Length = 350 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 120/336 (35%), Positives = 175/336 (52%), Gaps = 22/336 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +W+Y G+ ++ M + E+R L + + + ++ S DG+ K+L Sbjct: 22 FRRRQLLEWVYQHGVGSYEQMHTLPAELRAELAAGWRLNPFDDIETFRSDDGSVKYLFTL 81 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 P ++E VY+P R T+CVS+ VGC C+FC TG RNLT EI+ Q+L Sbjct: 82 PD-----GRQMEAVYMPYLDRKTICVSTMVGCPARCAFCATGAMGFGRNLTPGEIVGQIL 136 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 G P R+I N+V MGMGE + N+DN ++ I L Sbjct: 137 AVAGGEGIEP--------------REIRNLVFMGMGEAMLNYDNTMQAARILLHPQALGM 182 Query: 213 SKRRITLSTSGFVPNIARVGEE--IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 SKRR+TLST G I R+ EE +G+ LAISLHA + R ++P ++ ++ A Sbjct: 183 SKRRVTLSTVGIAKGIRRLAEEDDLGIKLAISLHAPDEETRQQIIPTGGANSIDEIMQAA 242 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 R Y + RIT EY ML+GIND A L + L+G+ + +NLIP NPWPG ++ S Sbjct: 243 RDYQAKTGR-RITMEYTMLRGINDHLWQAELLAERLEGLVSHVNLIPMNPWPGSNFVSST 301 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 ++ I F + ++ G +R RG D AACGQL Sbjct: 302 EEQIQAFYDLLEERGVDVSVRRSRGKDAGAACGQLA 337 >gi|15805960|ref|NP_294660.1| ribosomal RNA large subunit methyltransferase N [Deinococcus radiodurans R1] gi|81624900|sp|Q9RVT6|RLMN_DEIRA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|6458660|gb|AAF10513.1|AE001946_5 conserved hypothetical protein [Deinococcus radiodurans R1] Length = 346 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 117/336 (34%), Positives = 173/336 (51%), Gaps = 22/336 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +W++V+G+ F M+++ +R L + + ++ S DG+ K+L Sbjct: 17 FRRKQLLEWVFVQGVGTFDAMTNLPAGLRAELESEYQLNPFRDIETVRSHDGSVKYLFTL 76 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 ++E VY+P R T+CVS+ VGC C+FC TG RNLT EI+ QVL Sbjct: 77 ND-----GRQMEAVYMPYLDRKTICVSTMVGCPARCAFCATGKMGFGRNLTPGEIVGQVL 131 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 G P R+I N+V MGMGE L N++N + + L Sbjct: 132 AVAGGEGISP--------------REIRNLVFMGMGEALLNYENSMAAARVLLHPDALGM 177 Query: 213 SKRRITLSTSGFVPNIARVGEE--IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 SKRR+TLST G I R+ EE +G+ LAISLHA + R ++P +E ++ A Sbjct: 178 SKRRVTLSTVGIAKGIRRLAEEDDLGIKLAISLHAPDEETRQQIIPTGAANSIEEIMAAA 237 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 R Y ++ R+T EY ML+G+ND A L L G+ + +NLIP NPW G +++ S Sbjct: 238 RDYQAVTGR-RVTMEYTMLRGVNDHLWQAELLADRLDGLVSHVNLIPMNPWDGSDFVSSS 296 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 ++ I F + ++ G +R RG D AACGQL Sbjct: 297 EEQIQAFYDALQDRGVDVSVRRSRGKDAGAACGQLA 332 >gi|227488624|ref|ZP_03918940.1| possible Fe-S-cluster redox protein [Corynebacterium glucuronolyticum ATCC 51867] gi|227091518|gb|EEI26830.1| possible Fe-S-cluster redox protein [Corynebacterium glucuronolyticum ATCC 51867] Length = 398 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 126/390 (32%), Positives = 192/390 (49%), Gaps = 32/390 (8%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 + + ++E E L ++G+P + R +QI + Y R D + M+D+ + VR Sbjct: 18 RSMPPKHYADYTKDERIEILKELGLP----KFRDNQIARHYYGRFEADPELMTDLPESVR 73 Query: 62 HLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 + + V E + DG T+K L + + +E+V + R TLC+SS Sbjct: 74 TTVGEKLFPQLMSPVRETSADDGKTQKMLWKLHDGTL-----LESVLMEYPDRATLCISS 128 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC + C FC TG L RNL+ EI+ QV A + + G ++S Sbjct: 129 QAGCGMACPFCATGQGGLDRNLSTGEIVDQVRAAA--------------ATMQAKGGRLS 174 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIAS--DSMGLSFSKRRITLSTSGFVPNIARVGEE-IGV 237 NIV MGMGEPL N++ V ++ + G S+R ITLST G P I R E + Sbjct: 175 NIVFMGMGEPLANYNRVLSAIRQITQPSPEGFGISQRGITLSTVGLAPAIRRFAAEGLSC 234 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 LA+SLH ++LR+ LVP N ++ + ++DA R Y S R++ EY +++ IND P Sbjct: 235 RLAVSLHTPDDELRDSLVPANNRWSIAEVLDAAREYAEASGR-RVSIEYALIRDINDQPW 293 Query: 298 DALNLIKILKG---IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 A L K L G +NLIP NP PG ++ S ++ F + + G + +R R Sbjct: 294 RADLLGKKLHGALGSKVHVNLIPLNPTPGSKWDASPKRVQDEFQKRVIARGVTCTVRDTR 353 Query: 355 GLDILAACGQLKSLSKRIPKVPRQEMQITG 384 G +I AACGQL + +R R+ + T Sbjct: 354 GQEIAAACGQLAAE-ERTGAAARRAKEATA 382 >gi|289450590|ref|YP_003475435.1| 23S rRNA m2A2503 methyltransferase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185137|gb|ADC91562.1| 23S rRNA m2A2503 methyltransferase [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 345 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 117/363 (32%), Positives = 182/363 (50%), Gaps = 30/363 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K + +L +P R Q+ W+ RGI ++DIS+ +R L Sbjct: 3 QKPFIYDATTADLTAFCRANDVPL----YRVKQVEAWL-ARGINSPDDLTDISKSLREKL 57 Query: 65 NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F+ S D T K++ R +E+V++ ++ ++C+S+Q G Sbjct: 58 ASEFNFAGLVAERNIKSQLDATEKFVFRL-----ADGQCVESVFMQYRTGNSVCLSTQAG 112 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C+FC + RNLTA E+ QV L + +IS++V Sbjct: 113 CRMGCTFCASTGIGFGRNLTAGELTAQVALIGRHRAE-----------------RISHVV 155 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEPL N++ V K + ++ GL+ S R ITLST G V I ++ E + + LAIS Sbjct: 156 LMGIGEPLENYEEVVKFIRTVNNPQGLNISMRHITLSTCGLVDEIKKLAHENLPINLAIS 215 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA ++ LR+ L+PI ++YPL LI A +Y + RITFEY + +ND ++A L Sbjct: 216 LHAPNDVLRSQLMPIAKRYPLAQLIPAASYYAKQTGR-RITFEYALFADVNDRLQEAAEL 274 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 K+L G+ +NLIP N +PG Y S + F + + G ++ +R G DI AAC Sbjct: 275 SKLLHGLLCHVNLIPANEFPGSLYHRSSKTSTKNFLDYLTAHGITATVRRELGSDIAAAC 334 Query: 363 GQL 365 GQL Sbjct: 335 GQL 337 >gi|225164328|ref|ZP_03726595.1| radical SAM enzyme, Cfr family [Opitutaceae bacterium TAV2] gi|224801062|gb|EEG19391.1| radical SAM enzyme, Cfr family [Opitutaceae bacterium TAV2] Length = 375 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 128/380 (33%), Positives = 199/380 (52%), Gaps = 29/380 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K L G + L L + G R QI W+Y + R + M+++S+ +R L Sbjct: 7 KPFLTGETLDSLTARLREHG----EQTFRARQILDWVYKKRARSWDDMTNLSKALRAWLA 62 Query: 66 QHFSIIYPEIVDEKISCDG---TRKWLLRFPARCIGGPVEIETVYIP--------EKSRG 114 + F +I +V +K S D T K LL G +ETV I E SR Sbjct: 63 ETFVLIPAALVLDKQSHDAHDATDKLLLEL-----GDASLVETVIIRAPQDGVGLEHSRK 117 Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 T+C+S+QVGC++ C+FC +G L R+L A EI+ Q+L ED S Sbjct: 118 TICISTQVGCAMACAFCASGLAGLKRDLLAGEIVAQLLHV-------CYREDARTPRARS 170 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234 NIV+MGMGEPL N+D + ++L I + GL RRITLSTSG VP I ++ +E Sbjct: 171 ELASFDNIVVMGMGEPLANYDAIVRALRIVNAEWGLGVGARRITLSTSGLVPKILKLADE 230 Query: 235 -IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 +G+ LAISLH ++++R ++P+N+ +PL LI A + + N R +T E+++++ +N Sbjct: 231 DLGIRLAISLHGATDEVRERIMPVNKAFPLAKLIPAVKTFSE-KNGRMVTLEFILIEEVN 289 Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353 D+ A L I + + A +NLIP+N G + F++ ++ + S +R Sbjct: 290 DTIEQAEALCYIARDLHAHVNLIPYNTVEGLLWKRPSLTRQERFADVLRAARVSVTLRRE 349 Query: 354 RGLDILAACGQLKSLSKRIP 373 +G DI AACGQL+ +++ Sbjct: 350 KGHDIDAACGQLRLKTEKER 369 >gi|118472101|ref|YP_886882.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium smegmatis str. MC2 155] gi|205829815|sp|A0QVE4|RLMN_MYCS2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|118173388|gb|ABK74284.1| radical SAM enzyme, Cfr family protein [Mycobacterium smegmatis str. MC2 155] Length = 372 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 128/374 (34%), Positives = 192/374 (51%), Gaps = 21/374 (5%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 + + L + A+ ++G+P R Q+ Y R I D Q M+D+ VR Sbjct: 12 RAMPPQHLADLDETARAAAVTELGLPA----FRAKQLANQYYGRLIADPQQMTDLPAAVR 67 Query: 62 HLLNQH-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 + + F + + + + TRK L R E+V + R T+C+SS Sbjct: 68 DQVAEKLFPTLINPVREIQCDAGETRKTLWR-----AIDGSTFESVLMRYPQRNTVCISS 122 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC + C FC TG L RNLT EIL QV A S + E + G ++S Sbjct: 123 QAGCGMACPFCATGQGGLQRNLTTAEILEQVRAASSTMR----AEHFGRTAGTAGGGRLS 178 Query: 181 NIVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGV 237 NIV MGMGEPL N++ V ++ IA+ G S R +T+ST G P I ++ +E +GV Sbjct: 179 NIVFMGMGEPLANYNRVLGAVRRIIAAPPNGFGISARSVTVSTVGLAPAIRKLADERLGV 238 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 LA+SLHA ++LR+ LVP+N ++ + ++DA R+Y + RR++ EY +++ +ND P Sbjct: 239 TLALSLHAPDDELRDTLVPVNNRWKVSEVLDAARYYAD-TTGRRVSIEYALIRDVNDQPW 297 Query: 298 DALNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 A L K L G A +N+IP NP PG E+ S + F + ++ G S +R R Sbjct: 298 RADLLGKKLHGALGPLAHVNVIPLNPTPGSEWDASPKPAEREFVKRVRERGVSCTVRDTR 357 Query: 355 GLDILAACGQLKSL 368 G +I AACGQL + Sbjct: 358 GREIAAACGQLAAE 371 >gi|303228552|ref|ZP_07315380.1| 23S rRNA m2A2503 methyltransferase [Veillonella atypica ACS-134-V-Col7a] gi|302516799|gb|EFL58713.1| 23S rRNA m2A2503 methyltransferase [Veillonella atypica ACS-134-V-Col7a] Length = 348 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 119/370 (32%), Positives = 191/370 (51%), Gaps = 30/370 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L+G EL+ + + + R Q+ +IY R I FQ M+ + +R L+ + Sbjct: 4 LLGKSLVELQALFEEH----KVQKFRAKQLIDYIYHRHIFVFQDMTQFPKTLRDWLDSNC 59 Query: 69 SIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 + P+++ + +S D T+K LL IE V + + ++CVSSQVGC++ Sbjct: 60 IVSIPKVITQSVSPDEKTQKLLLELADHS-----RIEAVLMEQHYGNSVCVSSQVGCAMG 114 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC + L R+L+ EI+ QV+L +L + I ++V+MG Sbjct: 115 CVFCASTQGGLFRDLSVSEIVGQVVLFSALKQED-----------------IHSLVVMGA 157 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 GEPL N+DNV ++L + D M S R++T+ST G+VPNI ++ +E + + LA+SLHA Sbjct: 158 GEPLQNYDNVLQALKLIHDPMTFDISYRKMTISTCGWVPNIYKLADEDLPITLALSLHAT 217 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 +++ R ++P+ +Y L+ ++DA ++Y + RITFEY+++ IN S +A L I Sbjct: 218 TDETRRKIMPVGSRYKLDEVLDAVKYYYEKTQR-RITFEYILIDSINVSLEEAHELGNIG 276 Query: 307 KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 K P +NLIP N K + F + + G S IR G I AACGQL Sbjct: 277 KAFPNCHVNLIPVNGNEHINLYKPSSKHMNIFKDIVASYGVSVTIRKEMGDAIQAACGQL 336 Query: 366 KSLSKRIPKV 375 K R ++ Sbjct: 337 KVAHGRKEEI 346 >gi|227500112|ref|ZP_03930183.1| Fe-S-cluster redox enzyme [Anaerococcus tetradius ATCC 35098] gi|227217827|gb|EEI83124.1| Fe-S-cluster redox enzyme [Anaerococcus tetradius ATCC 35098] Length = 341 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 123/370 (33%), Positives = 200/370 (54%), Gaps = 31/370 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K L +E+E +K G + R Q+++ I+V+ I DF M+D+S+E+R Sbjct: 1 MTKT-LNDKSIKEIESIFIKEGY----QKFRAKQVYRQIHVKRINDFDKMTDLSKEMREK 55 Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L ++++ +++ E +S D T+K+L I IE V++ R T+C+SSQV Sbjct: 56 LGENYAFPKMKLLKEFVSKLDSTKKYLFSLDDGNI-----IEAVFMDYDKRKTICISSQV 110 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC + LVRNLTA E++ +V + G+ I+NI Sbjct: 111 GCRMGCKFCASTKNGLVRNLTAGELIEEVYELERINGE------------------INNI 152 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241 V+MG+GEPL N+DN+ K + + +++ G S R ITLSTSG P I ++ + ++ V LA+ Sbjct: 153 VIMGIGEPLDNYDNIVKFIDLITNADGRDLSHRSITLSTSGLAPMIRKLADSKLDVNLAL 212 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH ++ R +P+ KY +E L++A +Y + R++FEYV++ G+N++ D N Sbjct: 213 SLHYANDKKRQKFMPVANKYKIEDLLEATDYYLAKTKR-RVSFEYVVIDGVNNTDSDVDN 271 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L +LK INLIP NP Y + F + + + ++ IR G DI A+ Sbjct: 272 LYSLLKNKNVHINLIPLNPIEEFAYNRPKSSALTEFRDKLVKRKLNATIRRSMGSDIDAS 331 Query: 362 CGQLKSLSKR 371 CGQL++ R Sbjct: 332 CGQLRNNYAR 341 >gi|296117650|ref|ZP_06836234.1| radical SAM enzyme, Cfr family [Corynebacterium ammoniagenes DSM 20306] gi|295969381|gb|EFG82622.1| radical SAM enzyme, Cfr family [Corynebacterium ammoniagenes DSM 20306] Length = 367 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 115/373 (30%), Positives = 184/373 (49%), Gaps = 29/373 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 L + E + L ++G+P + R Q+ K YV D M+DI + R Sbjct: 19 LPPKHFADYTEAERIKILDELGLP----KFRAKQLAKHYYVHHTVDVDEMTDIPESARKD 74 Query: 64 LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + + F + + DG T K L R + +E+V + R TLC+SSQ Sbjct: 75 IQEKFFPPLMTQIRGFSTDDGETTKSLWRLHDGTL-----LESVLMRYPGRATLCISSQA 129 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RNL+A EI+ Q+ A + + G +++N+ Sbjct: 130 GCGMACPFCATGQGGLDRNLSAAEIVEQLRNASKTM--------------EAEGGRLTNV 175 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 V MGMGEPL N+ V ++ +D G S R +T+ST G P + ++ +E + LAI Sbjct: 176 VFMGMGEPLANYKRVVHAVKQFTDPDGFGMSMRNVTISTVGLAPAVRKLADEGLSCTLAI 235 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH ++ RN LVP+N+++ ++ ++DA R+Y ++ R++ EY +++ ND A Sbjct: 236 SLHTPDDEFRNELVPVNQRWDVDEILDAARYYVDKTSR-RVSIEYALIRDKNDQDFRADM 294 Query: 302 LIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 L + L G +NLIP NP PG E+ S ++ F + G +R +G +I Sbjct: 295 LGQKLHKVLGSKVHVNLIPLNPTPGSEWDASPKERQEEFVRRVIAQGVPCTVRDTKGQEI 354 Query: 359 LAACGQLKSLSKR 371 AACGQL + ++ Sbjct: 355 AAACGQLAAEERQ 367 >gi|315453551|ref|YP_004073821.1| putative radical-SAM-proteins [Helicobacter felis ATCC 49179] gi|315132603|emb|CBY83231.1| Putative radical-SAM-proteins [Helicobacter felis ATCC 49179] Length = 356 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 127/377 (33%), Positives = 196/377 (51%), Gaps = 36/377 (9%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SL + E + + G Q + W+Y R M ++ + + Sbjct: 4 KPSLYALTLAEWQNYCTQHGFRP----FVAKQFYAWLYQRYA-SLDQMHNLPHAFKEAVC 58 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS--------RGTLC 117 F + E+++ + S D + K+L + E+VY+ + + TLC Sbjct: 59 ADFEVRPLEVLECQQSADKSVKYLFKTFD-----GHSFESVYMVMREAREGEAQEKITLC 113 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 +S Q+GC + C FC T VRNL A EI+ QV+ + P Sbjct: 114 LSCQIGCKVGCVFCATAKGGFVRNLNAGEIVEQVVALKRAHQLEPT-------------- 159 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIG 236 + N+V MGMGEPL NF+ V +L I S GL+ + RRIT+STSG VP + +G +G Sbjct: 160 RGINLVFMGMGEPLHNFEQVVHALEILSTHEGLNIAPRRITISTSGVVPALQTLGALNLG 219 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 V LAISLHAV++ LR+ L+PIN+ Y L+ LI+A + +P L +R+ FEY+M+K +NDS Sbjct: 220 VQLAISLHAVNDSLRSKLMPINKVYNLQALINALKAFP-LDKRKRVMFEYLMIKDVNDSL 278 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 A L+++L G+ AKINLIP+N P ++ + + + F++ + + G IR +G Sbjct: 279 SHAKELLRLLNGLKAKINLIPYNSTPHSKFERPELERVQAFADFLNQKGLLCTIRISKGQ 338 Query: 357 DILAACGQLKSLSKRIP 373 DI AACGQL+ +R+ Sbjct: 339 DIAAACGQLR--EQRLK 353 >gi|257066169|ref|YP_003152425.1| radical SAM enzyme, Cfr family [Anaerococcus prevotii DSM 20548] gi|256798049|gb|ACV28704.1| radical SAM enzyme, Cfr family [Anaerococcus prevotii DSM 20548] Length = 341 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 127/368 (34%), Positives = 196/368 (53%), Gaps = 30/368 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ L +ELEE K G + R Q+++ I+V + DF+ MSD+S+++R L+ Sbjct: 2 KDKLNDKSIKELEEIFTKEGY----QKFRAKQVYRQIHVNKVNDFKLMSDLSKDMREKLS 57 Query: 66 QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + + ++ E +S D T+K+L I IE V++ R T+C+SSQVGC Sbjct: 58 EKYDFPKMKVEKEFVSELDSTKKYLFSLADGNI-----IEAVFMDYDKRKTICISSQVGC 112 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC + RNL+A E++ +V L GD I+NIV+ Sbjct: 113 RMGCKFCASTKNGRERNLSAGELIEEVYALERLNGD------------------INNIVI 154 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG+GEPL N++N++K + I +D G + S R ITLSTSG P I ++ + + V LA+SL Sbjct: 155 MGIGEPLDNYENIRKFIEIITDEKGRNLSHRSITLSTSGLSPMIRKLADSGLDVNLAVSL 214 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H +D R +PI KY +E L++A +Y + R++FEYV++ G+N+ D NL Sbjct: 215 HYADDDKRRKFMPIANKYSIESLMEATDYYLDRTKR-RVSFEYVVIDGVNNLDSDVSNLT 273 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LKG INLIP NP Y + F + + + ++ IR G DI A+CG Sbjct: 274 SLLKGKNVHINLIPLNPIEEFSYDRPKSTALRDFRDKLLKKKLNATIRKSMGSDIDASCG 333 Query: 364 QLKSLSKR 371 QL++ R Sbjct: 334 QLRNNYAR 341 >gi|325067056|ref|ZP_08125729.1| ribosomal RNA large subunit methyltransferase N [Actinomyces oris K20] Length = 370 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 126/380 (33%), Positives = 181/380 (47%), Gaps = 32/380 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + + A G+P R Q+ + + RD M+D+ R L Sbjct: 11 RHLADLDLSGRKAACKDSGLPS----FRADQLSRHYFTHFTRDSADMTDLPAAQREQLCA 66 Query: 67 HFSIIYPEIVDEKIS--CDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + PE++ + DG T K L V +E+V + K R TLCVSSQ Sbjct: 67 E---LLPELITPVRALRADGGRTIKHLWELHD-----GVRVESVLMRYKERTTLCVSSQA 118 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RNL+ EI+ QV A + ++SN+ Sbjct: 119 GCGMACPFCATGQMGLTRNLSTGEIVEQVRHAAQ---------ASAAGELTGGPARLSNV 169 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239 V MGMGEP+ N+ NV +L D G S R IT+ST G VP I R+ E + V L Sbjct: 170 VFMGMGEPMVNYKNVVGALHRLIDPAPEGFGLSARGITVSTVGLVPLIRRLAGEGLPVTL 229 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA ++LR+ L+P+N K+ + L+DA Y L+ RR++ EY ++K +ND A Sbjct: 230 AVSLHAPDDELRDELIPVNSKWKVGELLDAAHDYF-LATGRRVSIEYALIKDMNDHAWRA 288 Query: 300 LNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L L A +N IP NP PG + CS+ F + ++R+G ++ +R RG Sbjct: 289 QLLADELNRRDTGWAHVNPIPLNPTPGSIWTCSEVAVQDMFVDTLRRAGITTTVRDTRGS 348 Query: 357 DILAACGQLKSLSKRIPKVP 376 DI ACGQL + +V Sbjct: 349 DIDGACGQLATEVLNQERVK 368 >gi|326771755|ref|ZP_08231040.1| radical SAM enzyme, Cfr family [Actinomyces viscosus C505] gi|326637888|gb|EGE38789.1| radical SAM enzyme, Cfr family [Actinomyces viscosus C505] Length = 420 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 126/380 (33%), Positives = 181/380 (47%), Gaps = 32/380 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + + A G+P R Q+ + + RD M+D+ R L Sbjct: 61 RHLADLDLSGRKAACKDSGLPS----FRADQLSRHYFTHFTRDSADMTDLPAAQREQLCA 116 Query: 67 HFSIIYPEIVDEKIS--CDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + PE++ + DG T K L V +E+V + K R TLCVSSQ Sbjct: 117 E---LLPELITPVRALRADGGRTIKHLWELHD-----GVRVESVLMRYKERTTLCVSSQA 168 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RNL+ EI+ QV A + ++SN+ Sbjct: 169 GCGMACPFCATGQMGLTRNLSTGEIVEQVRHAAQ---------ASAAGELTGGPARLSNV 219 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239 V MGMGEP+ N+ NV +L D G S R IT+ST G VP I R+ E + V L Sbjct: 220 VFMGMGEPMVNYKNVVGALHRLIDPAPEGFGLSARGITVSTVGLVPLIRRLAGEGLPVTL 279 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA ++LR+ L+P+N K+ + L+DA Y L+ RR++ EY ++K +ND A Sbjct: 280 AVSLHAPDDELRDELIPVNSKWKVGELLDAAHDYF-LATGRRVSIEYALIKDMNDHAWRA 338 Query: 300 LNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L L A +N IP NP PG + CS+ F + ++R+G ++ +R RG Sbjct: 339 QLLADELNRRDTGWAHVNPIPLNPTPGSIWTCSEVAVQDMFVDTLRRAGITTTVRDTRGS 398 Query: 357 DILAACGQLKSLSKRIPKVP 376 DI ACGQL + +V Sbjct: 399 DIDGACGQLATEVLNQERVK 418 >gi|296271697|ref|YP_003654328.1| radical SAM enzyme, Cfr family [Arcobacter nitrofigilis DSM 7299] gi|296095872|gb|ADG91822.1| radical SAM enzyme, Cfr family [Arcobacter nitrofigilis DSM 7299] Length = 355 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 129/376 (34%), Positives = 201/376 (53%), Gaps = 42/376 (11%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +S+ +EL+E L R Q++ WIY + + M +I +++ L + Sbjct: 2 QSIYDFTLDELKERLK--------PSFRAKQVYNWIYKKYANSYDEMKNIPNDLKEDLKE 53 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETV--YIPEK-----------SR 113 +++I +I+ ++ S DG+ K+L + +ETV + EK + Sbjct: 54 NYAIDILKIIKKEKSSDGSIKYLFKLHD-----GHTVETVFLLMREKQIGDDGVVEKGEK 108 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 T+C+S+QVGC + C+FC T VRNLT EI+ Q++ + Sbjct: 109 HTVCISTQVGCKVGCTFCLTAKGGFVRNLTVGEIVAQIVNMKRDNNID------------ 156 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG- 232 K NIV MGMGEPL N+ N S+ + S+ GL ++RR T+STSG I ++G Sbjct: 157 --ENKSLNIVFMGMGEPLDNYKNFVHSVKVFSEEEGLYINRRRQTVSTSGISSKIEKLGN 214 Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 E +G+ LAISLHAV ++LR+ L+P+N+ Y ++ +IDA + +P + +++ FEY+++K Sbjct: 215 ENLGIQLAISLHAVDDELRSELIPMNKAYNIKSIIDAVKKFP-VDARKKVMFEYLVIKDK 273 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 ND A L+ +L GI AK+NLI FNP+PG Y + K +V F + G IR Sbjct: 274 NDDIASAKKLLSLLDGIKAKVNLIYFNPYPGTTYQRPESKKMVEFQNYLISKGLLCTIRE 333 Query: 353 PRGLDILAACGQLKSL 368 +GLDI AACGQLK Sbjct: 334 SKGLDISAACGQLKEK 349 >gi|296171525|ref|ZP_06852789.1| cfr family radical SAM enzyme [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894087|gb|EFG73848.1| cfr family radical SAM enzyme [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 367 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 123/370 (33%), Positives = 186/370 (50%), Gaps = 29/370 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + E A+ ++ +P R Q+ Y R I D + M+D+ VR + + Sbjct: 17 RHLADLDAEGRAAAVAELRLPA----FRAKQLAHQYYGRLIADPRAMTDLPAAVRERVAE 72 Query: 67 HFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 ++CD TRK L R E+V + R T+C+SSQ GC Sbjct: 73 -AMFPRLLTAAADVACDAGQTRKTLWRGTD-----GTTFESVLMRYPQRNTVCISSQAGC 126 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EI+ QV A + L D G G+++SN+V Sbjct: 127 GMACPFCATGQGGLTRNLSTAEIVEQVRSAAAALRDDFGPP----------GQRLSNVVF 176 Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 MGMGEPL N+ V ++ ++ G S R +T+ST G P I ++ +E +GV LA+ Sbjct: 177 MGMGEPLANYARVVAAVRRITEPPPHGFGISARSVTVSTVGLAPAIRKLADERLGVTLAL 236 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++LR+ LVP+N ++ ++ +DA R+Y ++ R++ EY +++ +ND P A Sbjct: 237 SLHAPDDELRDTLVPVNNRWKIDEALDAARYYADVTGR-RVSVEYALIRDVNDQPWRADL 295 Query: 302 LIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 L K L G +NLIP NP PG E+ S + F ++ G S +R RG +I Sbjct: 296 LGKRLHRALGPLVHVNLIPLNPTPGSEWDASPKAAEREFVRRVRAQGVSCTVRDTRGREI 355 Query: 359 LAACGQLKSL 368 AACGQL + Sbjct: 356 SAACGQLAAE 365 >gi|259507523|ref|ZP_05750423.1| Cfr family radical SAM enzyme [Corynebacterium efficiens YS-314] gi|259164908|gb|EEW49462.1| Cfr family radical SAM enzyme [Corynebacterium efficiens YS-314] Length = 354 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 116/378 (30%), Positives = 184/378 (48%), Gaps = 31/378 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + + E+ EAL ++G+P + R +QI + Y R D M+D+ + R Sbjct: 1 MPPAHFADLSDEQRIEALSELGLP----KFRLNQIARHYYGRLEADPMTMTDLPEAARAK 56 Query: 64 LNQHFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + E + + D T+K L + + +E+V + R TLC+SSQ Sbjct: 57 VKDALFPTLMEPIRVVEADDENTQKTLWKLHDGTL-----LESVLMRYPDRATLCISSQA 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RNL+ EI+ QV A + + G ++SNI Sbjct: 112 GCGMACPFCATGQGGLDRNLSVGEIVDQVRNAA--------------ATMQAEGGRLSNI 157 Query: 183 VMMGMGEPLCNFDNVKKSLSIAS--DSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239 V MGMGEPL N+ V ++ + G S+R +T+ST G P I ++ +E + V L Sbjct: 158 VFMGMGEPLANYKRVVSAVRQITQPSPEGFGISQRSVTVSTVGLAPAIRKLADEDMSVTL 217 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH ++LR+ LVP+N ++ + ++DA R+Y S R++ EY +++ +ND A Sbjct: 218 AVSLHTPDDELRDELVPVNNRWSVAEVLDAARYYADKSGR-RVSIEYALIRDVNDQGWRA 276 Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L + L G +NLIP NP PG ++ S ++ F + G +R +G Sbjct: 277 DMLGQKLHKALGSRVHVNLIPLNPTPGSKWDASPRERQDEFVRRVIAQGVPCTVRDTKGQ 336 Query: 357 DILAACGQLKSLSKRIPK 374 +I AACGQL + K Sbjct: 337 EIAAACGQLAAEENSEEK 354 >gi|239918594|ref|YP_002958152.1| radical SAM enzyme, Cfr family [Micrococcus luteus NCTC 2665] gi|281415191|ref|ZP_06246933.1| ribosomal RNA large subunit methyltransferase N [Micrococcus luteus NCTC 2665] gi|239839801|gb|ACS31598.1| radical SAM enzyme, Cfr family [Micrococcus luteus NCTC 2665] Length = 465 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 116/369 (31%), Positives = 183/369 (49%), Gaps = 19/369 (5%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + +E +E +IG+P R Q+ + D + M+D+ ++ R + + Sbjct: 106 THLADLTLKERQEKAKEIGLPA----FRAKQLSVHYFEHYTTDPEQMTDLPRDKREAIAE 161 Query: 67 HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F V + G T K+L R + +E+V + R TLCVSSQ GC Sbjct: 162 AFFPPLLTEVRRMETDRGDTIKFLWRLFDGAL-----VESVLMRYPGRVTLCVSSQAGCG 216 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG L RN++ EI+ Q++LA ++ G + +++N+V M Sbjct: 217 MNCPFCATGQAGLTRNMSTAEIVEQIVLANQVIAQ--GGLGGKRKDGGHDADRVTNVVFM 274 Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 GMGEPL N+ V ++ D GL S R ITLST G VP I ++ EE + + A+S Sbjct: 275 GMGEPLANYKRVMAAVHRMVDPSPEGLGMSARNITLSTVGLVPAIRKLAEEGVPLTFALS 334 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA ++LR+ L+P+N ++ + IDA Y ++ RR++ EY ++K +ND A L Sbjct: 335 LHAPDDELRDELIPVNSRWKADEAIDAAYDYF-VATGRRVSIEYALIKDMNDHAWRADLL 393 Query: 303 IKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 K L +N IP NP PG + S++ F + + +G + +R RG +I Sbjct: 394 AKKLNARGKGWVHVNPIPLNPTPGSIWTASEKDVTREFVDRLNAAGIPTTLRDTRGKEID 453 Query: 360 AACGQLKSL 368 ACGQL + Sbjct: 454 GACGQLAAE 462 >gi|237741553|ref|ZP_04572034.1| radical SAM domain-containing protein [Fusobacterium sp. 4_1_13] gi|229429201|gb|EEO39413.1| radical SAM domain-containing protein [Fusobacterium sp. 4_1_13] Length = 358 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 131/380 (34%), Positives = 202/380 (53%), Gaps = 34/380 (8%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN +K +++ + +EEL E L+ +G+ + +++ W++ + R F M+++S + Sbjct: 1 MNN-EKINILNLTQEELTELLVSLGL----KKFYGKEVFIWLHKKITRSFDEMTNLSLKD 55 Query: 61 RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS------R 113 R +L + I + ++ +IS D T K+L + IETV + K R Sbjct: 56 REILTEKTYIPFFNLLKHQISKIDRTEKFLFELEDKRT-----IETVLLRHKDSKNKEIR 110 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 TLCVSSQVGC + CSFC TG +RNL+ EIL Q+ + Sbjct: 111 NTLCVSSQVGCPVKCSFCATGQSGYMRNLSVSEILNQIYTVER--------------RLR 156 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VG 232 G ++N+V MGMGEPL N DN+ KSLSI S+ G++ SKR+IT+STSG V I + + Sbjct: 157 KKGETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGVNISKRKITISTSGVVSGIEKILL 216 Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 ++I + LAISLH+ N+ R+ ++P+N+ +PLE L Y + RITFEY+++ Sbjct: 217 DKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVLVEYQKQTKR-RITFEYILIDNF 275 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIR 351 N S DA L + +NLIP+N G E+ K I F +K + +R Sbjct: 276 NISETDANALADFIHQFDHVVNLIPYNEVEGVEHTRPSVKKIDKFYNYLKNIRKVNVTLR 335 Query: 352 TPRGLDILAACGQLKSLSKR 371 +G DI ACGQL+ +K+ Sbjct: 336 QEKGSDIDGACGQLRQRNKK 355 >gi|159462948|ref|XP_001689704.1| predicted protein [Chlamydomonas reinhardtii] gi|158283692|gb|EDP09442.1| predicted protein [Chlamydomonas reinhardtii] Length = 358 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 121/369 (32%), Positives = 185/369 (50%), Gaps = 34/369 (9%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLNQH 67 ++G ELEE + G P R R Q+ + + G R + ++ I +E R LL Sbjct: 12 ILGRDTAELEELAARYGQP----RFRAKQLLEGVLQ-GARSVEDITTIPKEWRAQLLADG 66 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 + DGTRK+LL+ G +ETV IP + R T+CVSSQVGC + Sbjct: 67 VRTGRSLLHHSVGDADGTRKFLLQL-----GDGRIVETVGIPTEDRLTVCVSSQVGCPMR 121 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C+FC TG RNL EI+ QVL + L G R++SN+V MGM Sbjct: 122 CTFCATGKGGFARNLAPHEIMDQVLTVQELYG-----------------RRVSNVVFMGM 164 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAV 246 GEPL N +V ++ + + IT+ST G I R+ ++ LA+SLHA Sbjct: 165 GEPLLNLPSVTRAYHGLNKQ--IGIGGAFITISTVGVPNAIRRLAGADLKATLAVSLHAP 222 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 + LR ++P + YP+E L++ C Y + R+TFEY +L G+ND A L+ +L Sbjct: 223 NQALRESIIPSAKAYPIEALLEDCAAYFKRTGR-RVTFEYTLLSGVNDEVAHAQELVALL 281 Query: 307 KGIP--AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 + + +N+IP+NP E+ + + F+ ++ +G +R RGL+ AACGQ Sbjct: 282 QRYNLMSHVNVIPWNPVDESEFQRPSRNRVFAFTRAVEAAGLPCTVRETRGLEAAAACGQ 341 Query: 365 LKSLSKRIP 373 L++ ++ P Sbjct: 342 LRNQFQKTP 350 >gi|269120621|ref|YP_003308798.1| radical SAM enzyme, Cfr family [Sebaldella termitidis ATCC 33386] gi|268614499|gb|ACZ08867.1| radical SAM enzyme, Cfr family [Sebaldella termitidis ATCC 33386] Length = 357 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 134/370 (36%), Positives = 203/370 (54%), Gaps = 26/370 (7%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 ++K ++ G+ + LE+ LLK+ + QI+ W++ + +F S+IS+E R+ Sbjct: 10 IIEKLNISGLKYDTLEKELLKLNF----KKYNVKQIFNWLHNKMEDNFDNFSNISKENRN 65 Query: 63 LLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 +L+++F I ++D IS D T K+L + G V IE+V I K+R TLCVSSQ Sbjct: 66 ILSKNFFIPEITLLDHLISENDNTEKFLFKLQ-----GNVLIESVLIGHKNRYTLCVSSQ 120 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC+L C FC T T K +NL EIL+Q + L G K+ N Sbjct: 121 AGCALGCEFCATATMKFEKNLDISEILMQFYYVQKYLNQ--------------KGNKLDN 166 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLA 240 +V MGMGEP NFDNV S+ I + G + SKR T+STSG VP I + + + V LA Sbjct: 167 VVFMGMGEPFLNFDNVMDSIDILNSIDGQNCSKRNFTVSTSGLVPYIEKFTDLDSQVNLA 226 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLH+V+++ R+ ++P+N+KYPL+ L + Y + RI+FEY+++ N S DA Sbjct: 227 VSLHSVNDEYRSKIMPVNKKYPLKDLKKSLLAYQKKTKK-RISFEYILIDDFNCSKNDAF 285 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L K L+ +NLIP+NP G Y + F + ++ ++ +R +G DI A Sbjct: 286 ELTKFLREFSCLVNLIPYNPVAGKSYATPSKTRQQEFYRILLKNNINATLRETKGQDIAA 345 Query: 361 ACGQLKSLSK 370 ACGQLK + Sbjct: 346 ACGQLKVKRE 355 >gi|116626240|ref|YP_828396.1| radical SAM protein [Candidatus Solibacter usitatus Ellin6076] gi|123024386|sp|Q01QF9|RLMN_SOLUE RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|116229402|gb|ABJ88111.1| radical SAM enzyme, Cfr family [Candidatus Solibacter usitatus Ellin6076] Length = 356 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 145/361 (40%), Positives = 200/361 (55%), Gaps = 26/361 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + L+GM +L EAL R QI++ IY + +S + ++R L Sbjct: 17 QPLVGMDLTDLREALGS-----DQPGYRAKQIYEAIYRGQAANLVQISTLPAQLREDLAA 71 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + PEI S DGTR++LL+ +ETV +P+ R T+C+SSQVGC + Sbjct: 72 RHEVGLPEIAHLYQSTDGTRRYLLKLED-----GRTVETVLMPDGERDTICISSQVGCPV 126 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC T L R+LTA EI+ QVLL E + GR NIVMMG Sbjct: 127 DCKFCMTALMGLERSLTAGEIVGQVLLVAR-----------ENQLRQDGGR--LNIVMMG 173 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHA 245 GEPL N +NV K+ I D G S RR+T+ST+G +P IA +G E LAISL+A Sbjct: 174 QGEPLLNLENVVKATRILLDPAGFGLSPRRVTVSTAGIIPKIAELGREPVRPKLAISLNA 233 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + + R L+PI RKY L+ L+ AC+ YP L ++TFEYV+L+G+ND+ DA ++K+ Sbjct: 234 STEESRQELMPITRKYHLKDLLAACKAYP-LRPWEKLTFEYVLLRGVNDTDADARRVVKL 292 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L + AK+NLI NP PG Y D + + +F ++R+ +R PRGLDI AACGQL Sbjct: 293 LSNLNAKVNLIALNPGPGIPYATPDPERVASFQNIVRRA-LPCFVRKPRGLDIYAACGQL 351 Query: 366 K 366 K Sbjct: 352 K 352 >gi|315925829|ref|ZP_07922036.1| cfr family radical SAM enzyme [Pseudoramibacter alactolyticus ATCC 23263] gi|315620938|gb|EFV00912.1| cfr family radical SAM enzyme [Pseudoramibacter alactolyticus ATCC 23263] Length = 384 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 119/377 (31%), Positives = 197/377 (52%), Gaps = 34/377 (9%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L G+ + +G P + R Q+++W+Y + +++ +++R L Sbjct: 38 NLFGLTLAGCSALMRDLGEP----KFRGRQLFEWLYGKRAMAVDACTNLPKKLRETLKTR 93 Query: 68 FSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + I + E++ + DGT+K L+R +ETV + +LCVSSQVGC++ Sbjct: 94 WIIDWGEVLGVQADLEDGTKKMLIRL-----ADGECVETVLMAYDYGYSLCVSSQVGCAM 148 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC + LVRNLTA E+ Q+ L + G +IS +V+MG Sbjct: 149 GCAFCASTKGGLVRNLTAGEMAAQIALVE-----------------AAEGVRISRVVVMG 191 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 +GEPL N+DN+ + + I + G RRIT+ST G VP I R+ +E + + LAISLH+ Sbjct: 192 IGEPLANYDNLLRFIQILN--QGFGIGMRRITVSTCGIVPMIERLADEALEINLAISLHS 249 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +R ++P R+YPL+ L+ C++Y + R+TFEY ++ G+ND DA LI + Sbjct: 250 PDQAVREQIMPAARRYPLDRLLKTCKNYFNKTGR-RVTFEYALMAGVNDRDEDAKALIGL 308 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 G +NLI NP + S +++ F++ +K G + IR G +I AACGQL Sbjct: 309 FSGENVHLNLIRLNPITDGPFAGS--QNVTGFAKKLKTGGINCTIRRRIGKNIDAACGQL 366 Query: 366 KSLSKR-IPKVPRQEMQ 381 + ++ +P V + + Sbjct: 367 RHRQEQAVPMVTKPRGE 383 >gi|227543228|ref|ZP_03973277.1| possible Fe-S-cluster redox protein [Corynebacterium glucuronolyticum ATCC 51866] gi|227181037|gb|EEI62009.1| possible Fe-S-cluster redox protein [Corynebacterium glucuronolyticum ATCC 51866] Length = 398 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 126/390 (32%), Positives = 191/390 (48%), Gaps = 32/390 (8%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 + + ++E E L ++G+P + R +QI + Y R D M+D+ + VR Sbjct: 18 RSMPPKHYADYTKDERIEILKELGLP----KFRDNQIARHYYGRFEADPGLMTDLPESVR 73 Query: 62 HLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 + + V E + DG T+K L + + +E+V + R TLC+SS Sbjct: 74 TTVGEKLFPQLMSPVRETSADDGKTQKMLWKLHDGTL-----LESVLMEYPDRATLCISS 128 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC + C FC TG L RNL+ EI+ QV A + + G ++S Sbjct: 129 QAGCGMACPFCATGQGGLDRNLSTGEIVDQVRAAA--------------ATMQAKGGRLS 174 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIAS--DSMGLSFSKRRITLSTSGFVPNIARVGEE-IGV 237 NIV MGMGEPL N++ V ++ + G S+R ITLST G P I R E + Sbjct: 175 NIVFMGMGEPLANYNRVLSAIRQITQPSPEGFGISQRGITLSTVGLAPAIRRFAAEGLSC 234 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 LA+SLH ++LR+ LVP N ++ + ++DA R Y S R++ EY +++ IND P Sbjct: 235 RLAVSLHTPDDELRDSLVPANNRWSIAEVLDAAREYAEASGR-RVSIEYALIRDINDQPW 293 Query: 298 DALNLIKILKG---IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 A L K L G +NLIP NP PG ++ S ++ F + + G + +R R Sbjct: 294 RADLLGKKLHGALGSKVHVNLIPLNPTPGSKWDASPKRVQDEFQKRVIARGVTCTVRDTR 353 Query: 355 GLDILAACGQLKSLSKRIPKVPRQEMQITG 384 G +I AACGQL + +R R+ + T Sbjct: 354 GQEIAAACGQLAAE-ERTGAAARRAKEATA 382 >gi|194700820|gb|ACF84494.1| unknown [Zea mays] Length = 409 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 139/363 (38%), Positives = 202/363 (55%), Gaps = 26/363 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGI--RDFQGMSDISQEVRHL 63 K L GM ELE + G M +WK +Y + + ++ ++++ R + Sbjct: 49 KAMLKGMDYSELENWVQAQGFRPGQAMM----LWKCLYGNNVWAHCYDELAGLNKDFRKM 104 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQV 122 + +H + + D I+ DGTRK L + IETV IP + R T+CVSSQV Sbjct: 105 ITEHADLKALTMKDIHIASDGTRKILFSLEDGSV-----IETVIIPCARGRTTICVSSQV 159 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC++ C FC+TG L ++L+ EI+ Q + AR L D G I+N+ Sbjct: 160 GCAMNCQFCFTGRMGLRKHLSTAEIVEQAVFARRLFSDELGS--------------INNV 205 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 V MGMGEP N DNV K+ +I D GL FS R++T+STSG VP + R +E LA+S Sbjct: 206 VFMGMGEPFHNIDNVIKASAIMVDEQGLHFSPRKVTVSTSGLVPQLKRFLQESNCSLAVS 265 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 L+A ++++RN ++PINRKY L +L+ R L + + FEYVML G+NDS DA L Sbjct: 266 LNATTDEVRNWIMPINRKYNLNLLLGTLREELNLRQKQIVLFEYVMLSGVNDSMDDAKRL 325 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 I++++GIP KINLI FNP G ++ + I+ F + + G + +R RG D +AAC Sbjct: 326 IELVQGIPCKINLISFNPHGGSQFKPTPDDKIIEFRNVLIQGGLTVFVRLSRGDDQMAAC 385 Query: 363 GQL 365 GQL Sbjct: 386 GQL 388 >gi|120403214|ref|YP_953043.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium vanbaalenii PYR-1] gi|205829819|sp|A1T787|RLMN_MYCVP RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|119956032|gb|ABM13037.1| 23S rRNA m(2)A-2503 methyltransferase [Mycobacterium vanbaalenii PYR-1] Length = 365 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 119/374 (31%), Positives = 182/374 (48%), Gaps = 30/374 (8%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 + + A+ ++G+P R Q+ Y R I D M+D+ VR Sbjct: 14 RAMPPRHFADLDESGRAAAVAELGLPA----FRAKQLANQYYGRLIADPTQMTDLPAAVR 69 Query: 62 HLLNQH-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 + F ++ + + TRK L R E+V + R T+C+SS Sbjct: 70 ERVADALFPTLFGAAREIECDSGETRKVLWR-----AVDGTTFESVLMRYPDRNTVCISS 124 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC + C FC TG L RNL+ EIL QV A + L D G ++S Sbjct: 125 QAGCGMACPFCATGQGGLKRNLSTAEILEQVRAASAELRDRDGG-------------RLS 171 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIAS--DSMGLSFSKRRITLSTSGFVPNIARVGEE-IGV 237 N+V MGMGEPL N++ V ++ + G S R +T+ST G P I ++ +E + V Sbjct: 172 NVVFMGMGEPLANYNRVVAAVRRITASSPNGFGISARSVTVSTVGLAPAIRKLADEKLNV 231 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 LA+SLH ++LR+ LVP+N ++ ++ ++DA R+Y ++ R++ EY +++ +ND P Sbjct: 232 TLALSLHTPDDELRDTLVPVNNRWKVDEVLDAARYYADVTGR-RVSIEYALIRDVNDQPW 290 Query: 298 DALNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 A L K L G +NLIP NP PG E+ S + F ++ G S +R R Sbjct: 291 RADLLGKKLHGELGPLVHVNLIPLNPTPGSEWDASPKPVEREFVRRVRAKGVSCTVRDTR 350 Query: 355 GLDILAACGQLKSL 368 G +I AACGQL + Sbjct: 351 GREIAAACGQLAAE 364 >gi|317056479|ref|YP_004104946.1| radical SAM enzyme, Cfr family [Ruminococcus albus 7] gi|315448748|gb|ADU22312.1| radical SAM enzyme, Cfr family [Ruminococcus albus 7] Length = 348 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 118/344 (34%), Positives = 183/344 (53%), Gaps = 26/344 (7%) Query: 29 RHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKIS-CDGTRK 87 + R QI++W++V+ + F M+++S ++R L + F + IV S D T K Sbjct: 28 GEKKFRAKQIFEWLHVKRVDSFDKMTNLSVQLREKLKKIFCLKSLFIVKRLESNTDNTVK 87 Query: 88 WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147 +L R P +ETV + T+CVS+QVGC + C FC + R+L + EI Sbjct: 88 YLYRLPD-----GNHVETVIMEYNYGNTVCVSTQVGCKMGCRFCASTIAGYKRDLASSEI 142 Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207 LLQ+ A GRKI+ V+MG+GEP+ NFDNV L + S Sbjct: 143 LLQIYEAAR-----------------DSGRKITGAVLMGIGEPMDNFDNVVNFLKVLSCE 185 Query: 208 MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEML 266 G + S R +++ST G VP I + E +G+ L++SLHA +N R+ ++P+N +Y + L Sbjct: 186 QGTNMSLRHVSVSTCGIVPRIYELAEMKLGITLSVSLHASNNKARSEIMPVNNRYDIGEL 245 Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 + ACR+Y ++ RI+FEY ++ G ND DA L +LK +N+IP N Y Sbjct: 246 MTACRYYFKVTGR-RISFEYALIDGHNDKQSDAEELAALLKNFVCHVNIIPVNKIKERNY 304 Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 SD+K F + +++ G ++ +R G DI AACGQL+ + Sbjct: 305 -RSDRKAADRFRQRLEKLGLNATVRRTLGSDIDAACGQLRREYE 347 >gi|282890654|ref|ZP_06299177.1| hypothetical protein pah_c022o278 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499651|gb|EFB41947.1| hypothetical protein pah_c022o278 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 350 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 134/368 (36%), Positives = 192/368 (52%), Gaps = 27/368 (7%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 M EEL+ L + Q+ W+Y +GI D+ M++IS +++ LL S+ Sbjct: 7 MTEEELKTLLTSL----DQKPFHAKQLIDWVYGKGIIDWNEMTNISTDLKKLLQSQISLS 62 Query: 72 YPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130 + ++V K S D T K+L R + +E+V I R T+CVSSQVGC C+F Sbjct: 63 HLQLVHVKPSADLETYKFLWRLKDNKL-----VESVLICSGDRRTVCVSSQVGCPAKCAF 117 Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 C +G Q RNL EI+ QV L L D ++S++V MGMGEP Sbjct: 118 CASGKQGFFRNLRPHEIVEQVFLINQWLKD--------------KNERVSHVVYMGMGEP 163 Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSND 249 L N+D V KS+ + S+ L+ S+RRIT+ST G V I R+ EE+ V L +SLHA + Sbjct: 164 LKNYDPVIKSIRLLSNPELLNLSQRRITVSTVGIVEGIKRLSREELKVSLVLSLHAPNQH 223 Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309 +R ++P RKYPL+ +++A Y L+ ITFEY ++ GIND P A L +L G Sbjct: 224 IRQKIIPYARKYPLDAIMEAMDEYAKLTKRD-ITFEYTLIAGINDHPDHAFELTHLLHGK 282 Query: 310 -PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 +NLIP+NP PG ++K I F + + + R +G DI AACGQL Sbjct: 283 SQFTVNLIPYNPVPGLRLKRPEKKAIKQFRAVLFGAKVVNTCRYTKGDDIAAACGQLALQ 342 Query: 369 SKRIPKVP 376 K+ Sbjct: 343 ELEKEKIA 350 >gi|289706145|ref|ZP_06502515.1| radical SAM enzyme, Cfr family [Micrococcus luteus SK58] gi|289557139|gb|EFD50460.1| radical SAM enzyme, Cfr family [Micrococcus luteus SK58] Length = 465 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 116/369 (31%), Positives = 183/369 (49%), Gaps = 19/369 (5%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + +E +E +IG+P R Q+ + D + M+D+ ++ R + + Sbjct: 106 THLADLTLKERQEKAKEIGLPA----FRAKQLSVHYFEHYTTDPEQMTDLPRDKREAIAE 161 Query: 67 HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F V + G T K+L R + +E+V + R TLCVSSQ GC Sbjct: 162 AFFPPLLTEVRRMETDRGDTVKFLWRLFDGAL-----VESVLMRYPGRVTLCVSSQAGCG 216 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG L RN++ EI+ Q++LA ++ G + +++N+V M Sbjct: 217 MNCPFCATGQAGLTRNMSTAEIVEQIVLANQVIA--AGGLGGKRKDGGHDADRVTNVVFM 274 Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 GMGEPL N+ V ++ D GL S R ITLST G VP I ++ EE + + A+S Sbjct: 275 GMGEPLANYKRVMAAVHRMVDPSPEGLGMSARNITLSTVGLVPAIRKLAEEGVPLTFALS 334 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA ++LR+ L+P+N ++ + IDA Y ++ RR++ EY ++K +ND A L Sbjct: 335 LHAPDDELRDELIPVNSRWKADEAIDAAYDYF-VATGRRVSIEYALIKDMNDHAWRADLL 393 Query: 303 IKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 K L +N IP NP PG + S++ F + + +G + +R RG +I Sbjct: 394 AKKLNARGKGWVHVNPIPLNPTPGSIWTASEKDVTREFVDRLNAAGIPTTLRDTRGKEID 453 Query: 360 AACGQLKSL 368 ACGQL + Sbjct: 454 GACGQLAAE 462 >gi|68536246|ref|YP_250951.1| hypothetical protein jk1169 [Corynebacterium jeikeium K411] gi|123650875|sp|Q4JV24|RLMN_CORJK RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|68263845|emb|CAI37333.1| conserved hypothetical protein [Corynebacterium jeikeium K411] Length = 365 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 121/374 (32%), Positives = 190/374 (50%), Gaps = 31/374 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + + + E L+E + ++G+P + R QI + Y R D M+D+ + R Sbjct: 16 MPPVHMADLDEETLKERVQELGLP----KFRADQIRRQYYGRLQGDPMEMTDLPESKRAA 71 Query: 64 LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + + + + + DG TRK L R + +E+V + R TLC+SSQ Sbjct: 72 VKEALFPELMQPMRNMDADDGETRKTLWRLHDGTM-----LESVLMRYPGRATLCISSQA 126 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RNL+ E++ Q A S + + G ++SNI Sbjct: 127 GCGMACPFCATGQGGLDRNLSVGEMVEQARAAASTMQE--------------EGGRLSNI 172 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239 V MGMGEPL N+ V +++ S G S+R IT+ST G P I ++ EE+ V L Sbjct: 173 VFMGMGEPLANYKRVVETIRKVSAPAPDGFGISQRNITVSTVGLAPAIRKLADEEMKVRL 232 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH ++LR+ LVP+N ++ +E ++DA R+Y S R++ EY +++ +ND P A Sbjct: 233 AVSLHTPDDELRDELVPVNNRWSVEEVLDAARYYADTSGR-RVSIEYALIRDMNDQPWRA 291 Query: 300 LNLIKILKG---IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L K L+G +NLIP NP PG ++ S + F ++ G +R +G Sbjct: 292 DLLGKKLRGALGTKVHVNLIPLNPTPGSKWDASPKDRQDEFVRRVEAQGVPCTVRDTKGQ 351 Query: 357 DILAACGQLKSLSK 370 +I AACGQL + + Sbjct: 352 EIAAACGQLAAEER 365 >gi|111225135|ref|YP_715929.1| ribosomal RNA large subunit methyltransferase N [Frankia alni ACN14a] gi|122953799|sp|Q0RDQ8|RLMN_FRAAA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|111152667|emb|CAJ64408.1| Fe-S-cluster redox enzyme [Frankia alni ACN14a] Length = 419 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 121/378 (32%), Positives = 186/378 (49%), Gaps = 28/378 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIR--DFQGMSDISQEVRHLL 64 L + R+E + + +G P R Q+ + + R + + M+D+ + R Sbjct: 33 RHLADLSRDERRQVAVALGQPA----FRADQVSRHYFARLVDADETDAMTDLPENARGP- 87 Query: 65 NQHFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + + +SCD TRK R + +E+V + R T+CVSSQ Sbjct: 88 LLEALLPRLLVPARTLSCDDGLTRKTAWRTADGAL-----LESVIMRYPDRATVCVSSQA 142 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RNL+ EI+ QV+ A +L + ++SN+ Sbjct: 143 GCGMGCPFCATGQGGLTRNLSTAEIVEQVVHAARVLR---------RQELAGGQGRLSNV 193 Query: 183 VMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239 V MGMGEPL N+ V +L IA GL S R +T+ST G VP + R+ E + V L Sbjct: 194 VFMGMGEPLANYTAVTAALRRLIAPSPEGLGLSARGLTVSTVGLVPAMRRLAGEGLPVTL 253 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA ++LR+ LVPIN ++P+ ++ A Y ++ R++ EY ++ G+ND A Sbjct: 254 AVSLHAPDDELRDELVPINTRWPVAEVLAAAWEYAEVTGR-RVSIEYALIDGVNDDVARA 312 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L +L G A +NLIP NP G + S F ++ G ++ +R RG +I Sbjct: 313 DALATLLAGRLAHVNLIPLNPTEGSSWQASAPAGQRAFVRRLRERGIATTVRDTRGREIA 372 Query: 360 AACGQLKSL-SKRIPKVP 376 AACGQL + + R +V Sbjct: 373 AACGQLAAEPAGRARRVE 390 >gi|325680303|ref|ZP_08159863.1| 23S rRNA m2A2503 methyltransferase [Ruminococcus albus 8] gi|324108012|gb|EGC02268.1| 23S rRNA m2A2503 methyltransferase [Ruminococcus albus 8] Length = 348 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 128/367 (34%), Positives = 202/367 (55%), Gaps = 30/367 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + ++G+M EELEE +L IG + R QI++W++V+ + F M+++S ++R L Sbjct: 9 RIDILGLMPEELEEQILLIG----EKKFRAKQIFEWLHVKRVDSFDKMTNLSVQLRDKLK 64 Query: 66 QHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F + IV S D T K+L R P +E+V + T+CVS+QVGC Sbjct: 65 KIFCLKSLFIVKRLESNTDNTVKYLYRLPD-----GNHVESVIMEYNHGNTVCVSTQVGC 119 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC + R+L+A EILLQ+ A GRKI V+ Sbjct: 120 KMGCKFCASTIAGYKRDLSASEILLQIYEAER-----------------DSGRKIGGAVL 162 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243 MG+GEPL N+DNV L + S G++ S R +++ST G VP I + E ++G+ L++SL Sbjct: 163 MGIGEPLDNYDNVVGFLKVLSCEAGMNMSLRHVSVSTCGLVPRIYELAELKLGITLSVSL 222 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +N R+ ++P+N +Y + L+ ACR+Y ++ RI+FEY ++ G NDS A L Sbjct: 223 HATNNRARSEIMPVNNRYDIAELMAACRYYFKVTGR-RISFEYALIDGHNDSQAAAEELA 281 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +L+G +N+IP N +Y SD+K + F + ++ G ++ +R G DI AACG Sbjct: 282 ALLRGFTCHVNIIPVNKIKERDY-RSDRKAAMRFQKRLEALGLNATVRRTLGADIDAACG 340 Query: 364 QLKSLSK 370 QL+ + Sbjct: 341 QLRREYE 347 >gi|254819036|ref|ZP_05224037.1| hypothetical protein MintA_03871 [Mycobacterium intracellulare ATCC 13950] Length = 367 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 123/371 (33%), Positives = 189/371 (50%), Gaps = 27/371 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + + A+ ++G+P R Q+ Y R I D + M+D+ +R + Sbjct: 17 RHLADLDADGRAAAVAELGLPA----FRAKQLAHQYYGRLIADPRQMTDLPAGLRDAIAD 72 Query: 67 H-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F I+ + + TRK L R V +E+V + R T+C+SSQ GC Sbjct: 73 TMFPILLTAVSEVACDAGETRKTLWRALD-----GVTVESVLMRYPQRNTVCISSQAGCG 127 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG L RNL+ EIL QV A ++L D G +++SN+V M Sbjct: 128 MACPFCATGQGGLSRNLSTAEILEQVRAAAAVLRDDFGPPS----------QRLSNVVFM 177 Query: 186 GMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 GMGEPL N+ V ++ IA+ G S R +T+ST G P I ++ +E + V LA+S Sbjct: 178 GMGEPLANYARVVAAVRRIIAAPPHGFGISARSVTVSTVGLAPAIRKLADEGLAVTLALS 237 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA ++LR+ LVP+N ++ + +DA R+Y ++ R++ EY +++ +ND P A L Sbjct: 238 LHAPDDELRDTLVPVNNRWKIAEALDAARYYADVTGR-RVSVEYALIRDVNDQPWRADLL 296 Query: 303 IKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 + L G +NLIP NP PG E+ S + F ++ G S +R RG +I Sbjct: 297 GQRLHRALGPLVHVNLIPLNPTPGSEWDASPKAVEREFVRRVRAKGVSCTVRDTRGREIS 356 Query: 360 AACGQLKSLSK 370 AACGQL ++ Sbjct: 357 AACGQLAFENR 367 >gi|227503385|ref|ZP_03933434.1| possible Fe-S-cluster redox protein [Corynebacterium accolens ATCC 49725] gi|306836373|ref|ZP_07469351.1| cfr family radical SAM enzyme [Corynebacterium accolens ATCC 49726] gi|227075888|gb|EEI13851.1| possible Fe-S-cluster redox protein [Corynebacterium accolens ATCC 49725] gi|304567733|gb|EFM43320.1| cfr family radical SAM enzyme [Corynebacterium accolens ATCC 49726] Length = 374 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 116/374 (31%), Positives = 185/374 (49%), Gaps = 31/374 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 L + + E + L +IG+P + R QI K Y D + M+DI R Sbjct: 20 LPPKHFADLSESERIDKLAEIGLP----KFRAKQIAKHYYEHLTDDVEEMTDIPAGKREE 75 Query: 64 LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + + F + + + DG T K L R + +E+V + R TLC+SSQ Sbjct: 76 VKEAFFPELMKPIRTTSTDDGETTKSLWRLHDGTL-----LESVLMRYPGRATLCISSQA 130 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RNL+ EI+ Q + + G ++SN+ Sbjct: 131 GCGMACPFCATGQGGLDRNLSTGEIVEQFRH--------------AAAAMAAEGGRLSNV 176 Query: 183 VMMGMGEPLCNFDNVKKSLSIAS--DSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239 V MGMGEPL N+ V +++ + D G S+R +T+ST G P I ++ +E + L Sbjct: 177 VFMGMGEPLANYKRVVQAVRQITGQDGTGFGLSQRNVTVSTVGLAPAIRKLADEDLACTL 236 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH ++LR+ LVP+N ++ ++ ++DA R+Y S ARR++ EY +++ ND A Sbjct: 237 AVSLHTPDDELRDSLVPVNNRWSVDEVLDAARYYADKS-ARRVSIEYALIRDKNDQDFRA 295 Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L + L G +N+IP NP PG E+ + + + F ++ G +R +G Sbjct: 296 DMLGRKLHQKLGSKVHVNVIPLNPTPGSEWDAAPKARLNEFVRRVQAQGVPCTVRDTKGD 355 Query: 357 DILAACGQLKSLSK 370 +I AACGQL + + Sbjct: 356 EIAAACGQLAADER 369 >gi|163782714|ref|ZP_02177710.1| hypothetical protein HG1285_15301 [Hydrogenivirga sp. 128-5-R1-1] gi|159881835|gb|EDP75343.1| hypothetical protein HG1285_15301 [Hydrogenivirga sp. 128-5-R1-1] Length = 349 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 139/365 (38%), Positives = 196/365 (53%), Gaps = 33/365 (9%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 + EEL E + +G+ + R Q+ KW+Y + DF M+D+ +E R LL F Sbjct: 4 ITDYNLEELRERFVSLGLE----KYRAGQVLKWLYKKLTTDFSSMTDLPKEQRRLLEDTF 59 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 E +D + D +RK+L R I +ETV I E+ TLCVSSQVGC++ C Sbjct: 60 RFHPLEKLDRVDAPD-SRKYLFRTHDGHI-----VETVLIRERDHLTLCVSSQVGCAVGC 113 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 +FC T L RNLT+ EIL Q L + KI N+V MGMG Sbjct: 114 TFCATAIDGLRRNLTSAEILDQFLQVQK-----------------DSPEKIRNVVFMGMG 156 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI---GVMLAISLHA 245 EPL N+DNV+K+ I GL SKRR+T+STSG V + R+ E+ + LA+SL+A Sbjct: 157 EPLANYDNVRKAAEIMVSPWGLDLSKRRVTVSTSGLVAQLRRMAEDPIMRELNLAVSLNA 216 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 R ++PI RK L L++ YP L RRIT EYV++K +NDS RDA L ++ Sbjct: 217 PRQSTRESIMPITRKNTLSELMEVLVKYP-LPRYRRITLEYVLIKDLNDSKRDAEELAEL 275 Query: 306 LKG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 L+ K+NLIPFNP P Y + ++ F + + G S+ +R +G+D+ ACG Sbjct: 276 LRRHRKRFKVNLIPFNPDPNLPYERPELTRVLNFQKVLWERGISTFVRFSKGVDVFGACG 335 Query: 364 QLKSL 368 QL++ Sbjct: 336 QLRAK 340 >gi|297571184|ref|YP_003696958.1| radical SAM enzyme, Cfr family [Arcanobacterium haemolyticum DSM 20595] gi|296931531|gb|ADH92339.1| radical SAM enzyme, Cfr family [Arcanobacterium haemolyticum DSM 20595] Length = 426 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 127/379 (33%), Positives = 185/379 (48%), Gaps = 27/379 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + + + R E + +G PQ R QI K + D + M+D+ R + Q Sbjct: 31 KHMADLTRAERRALVADLGYPQ----FRADQISKHYFEHDCADPEKMTDLPAAQRKEITQ 86 Query: 67 HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 V ++++ G T K L + + +E+V + R TLC+SSQ GC Sbjct: 87 VLLPQLMTKVKDQVADKGATIKTLWKLFDGAV-----VESVLMKYPQRATLCISSQAGCG 141 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG L RNL+ EI+ Q+ AR L E + +++N+V M Sbjct: 142 MACPFCATGQAGLTRNLSTAEIIEQLRYARELAASGIFGEPV----------RVTNVVFM 191 Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 GMGEPL NF V+ +L + G S R IT+ST G VP I ++ +E + V LA+S Sbjct: 192 GMGEPLANFPAVRGALRRMIEPAPEGFGMSARNITVSTVGMVPVINKLADEGLPVTLAVS 251 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA + LR+ L+PIN +Y + L+DA RHY + R++ EY ++K +ND A L Sbjct: 252 LHAPDDALRDDLIPINSRYKVGELLDAARHYFVRTGR-RVSIEYALIKDMNDHEWRAELL 310 Query: 303 IKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L A +N IP NP PG + CS + TF + +G S+ IR RG DI Sbjct: 311 AAELNSRGHGWAHVNPIPLNPTPGSIWTCSTPETTRTFVRTLSDAGISTTIRDTRGSDID 370 Query: 360 AACGQLKSLSKRIPKVPRQ 378 ACGQL + V R+ Sbjct: 371 GACGQLAAEVVDREHVSRR 389 >gi|118617647|ref|YP_905979.1| hypothetical protein MUL_2078 [Mycobacterium ulcerans Agy99] gi|205829818|sp|A0PQ89|RLMN_MYCUA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|118569757|gb|ABL04508.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] Length = 364 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 120/370 (32%), Positives = 185/370 (50%), Gaps = 32/370 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L E A+ +G+P R Q+ Y R I D + M+D+ VR + + Sbjct: 17 RHLADFDAEGRASAVAALGLPP----FRAKQLAHQYYGRLIADPRQMTDLPAAVRDQIAE 72 Query: 67 HFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +++CD TRK L R V +E+V + R T+C+SSQ GC Sbjct: 73 TMFPNLLT-AAREVTCDAGQTRKTLWR-----ATDGVTVESVLMRYPQRNTVCISSQAGC 126 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EI+ QV A + L D G ++SN+V Sbjct: 127 GMACPFCATGQGGLTRNLSTAEIVEQVRAAAAALRD-------------EFGDRLSNVVF 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 MG+GEPL N+ V ++ ++ G S R +T+ST G P I ++ +E +GV LA+ Sbjct: 174 MGLGEPLANYARVLAAVRRITEPPPTGFGISARSVTVSTVGLAPAIRKLADERLGVTLAL 233 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++LR+ LVP+N ++ + ++A +Y ++ R++ EY +++ +ND P A Sbjct: 234 SLHAPDDELRDTLVPVNNRWKISEALEAAHYYAEVTGR-RVSVEYALIREVNDQPWRADL 292 Query: 302 LIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 L K L G +NLIP NP PG ++ S + F + ++ G S +R RG +I Sbjct: 293 LGKRLHGALGPLVHVNLIPLNPTPGSDWDASPKPVEREFVKRVRAQGVSCTVRDTRGREI 352 Query: 359 LAACGQLKSL 368 AACGQL + Sbjct: 353 SAACGQLAAE 362 >gi|154485074|ref|ZP_02027522.1| hypothetical protein EUBVEN_02797 [Eubacterium ventriosum ATCC 27560] gi|149734027|gb|EDM50146.1| hypothetical protein EUBVEN_02797 [Eubacterium ventriosum ATCC 27560] Length = 320 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 121/347 (34%), Positives = 190/347 (54%), Gaps = 29/347 (8%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +K+ + +EL++ L +G R QI+KWI++ ++ F M++IS+ + Sbjct: 1 MVMTEKKDIKSYNLDELKQELANMG----EKPFRAGQIYKWIHIEKVQSFDEMTNISKNL 56 Query: 61 RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119 R L++ F I+ E V IS DGTRK+L R I G IE+V + ++C+S Sbjct: 57 RETLDEQFEIVTLEPVRVLISKIDGTRKYLFR-----IKGGAVIESVLMRYHHGNSVCIS 111 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 +Q GC + C FC + L RNL E+L Q+ +G+ ++ Sbjct: 112 TQSGCRMGCRFCASTLNGLDRNLRPSELLEQIYEIEKNIGE-----------------RV 154 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVM 238 SNIV+MG GEPL NF+NV K L + SD GL+ S+R ITLST G VP + + + Sbjct: 155 SNIVLMGSGEPLDNFENVTKFLELISDENGLNISQRNITLSTCGLVPRMKELANMHPQIT 214 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLHA +D R L+PI RKY + ++DAC++Y + RITFEY ++ G+ND+ + Sbjct: 215 LALSLHASDDDTRRELLPIARKYTIAEVLDACKYYFDKTGR-RITFEYSLVAGVNDTVEE 273 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSG 345 A L ++K + +NLIP NP +++ + +K + F +++ G Sbjct: 274 AEKLSALVKNLNCHVNLIPVNPIKERDFVQTGKKAVERFKRVLEKIG 320 >gi|46446329|ref|YP_007694.1| hypothetical protein pc0695 [Candidatus Protochlamydia amoebophila UWE25] gi|46399970|emb|CAF23419.1| conserved hypothetical protein [Candidatus Protochlamydia amoebophila UWE25] Length = 330 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 125/334 (37%), Positives = 179/334 (53%), Gaps = 22/334 (6%) Query: 39 WKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCI 97 WIY +G+ + MS++SQ +R L +H + E+V S D T K+L R + Sbjct: 1 MSWIYQKGVLSWDKMSNLSQSLREKLAKHIRLPVLELVRYTESIDQETIKFLWRLRDGNL 60 Query: 98 GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157 +E+V I R T+CVSSQVGC C+FC +G Q RNL EI+ Q+L + Sbjct: 61 -----VESVLILSGIRRTVCVSSQVGCPAKCAFCASGQQGFFRNLRPTEIIEQILQINAW 115 Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217 + S G K+S++V MGMGEPL N+++V S+ + S + S+RRI Sbjct: 116 --------------LSSKGEKVSHVVYMGMGEPLKNYESVVASIRVLSHPDFCNISQRRI 161 Query: 218 TLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276 T+ST G V I R+ +E + V L +SLHA + +R ++P RKYPLE ++++ Y Sbjct: 162 TVSTVGVVEGIKRLSKEGLKVNLVLSLHAPNQHIRKKIIPYARKYPLEEILESMDEYAQK 221 Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVT 336 + ITFEY +L GIND P A L +LKG +NLIP+NP PG ++K I Sbjct: 222 TKRD-ITFEYTLLAGINDHPDHAHELAHLLKGKQCTVNLIPYNPIPGLRLKRPEKKAIKQ 280 Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 F + S + R +G DI AACGQL + Sbjct: 281 FRSVLYGSHIVNTCRYTKGDDIGAACGQLALQER 314 >gi|320532046|ref|ZP_08032934.1| radical SAM enzyme, Cfr family [Actinomyces sp. oral taxon 171 str. F0337] gi|320135737|gb|EFW27797.1| radical SAM enzyme, Cfr family [Actinomyces sp. oral taxon 171 str. F0337] Length = 391 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 125/380 (32%), Positives = 180/380 (47%), Gaps = 32/380 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + + A G+P R Q+ + + R M+D+ R L Sbjct: 32 RHLADLDLAGRKAACKDSGLPS----FRADQLSRHYFTHFTRHSADMTDLPAAQREQLCA 87 Query: 67 HFSIIYPEIVDEKIS--CDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + PE++ + DG T K L V +E+V + K R TLCVSSQ Sbjct: 88 E---LLPELITPVRALRADGGRTIKHLWELHD-----GVRVESVLMRYKERTTLCVSSQA 139 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RNL+ EI+ QV A + ++SN+ Sbjct: 140 GCGMACPFCATGQMGLTRNLSTGEIVEQVRHAAQ---------ASAAGELTGGPARLSNV 190 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239 V MGMGEP+ N+ NV +L D G S R IT+ST G VP I R+ E + V L Sbjct: 191 VFMGMGEPMVNYKNVVGALHRLIDPAPEGFGLSARGITVSTVGLVPLIRRLAGEGLPVTL 250 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA ++LR+ L+P+N K+ + L+DA Y L+ RR++ EY ++K +ND A Sbjct: 251 AVSLHAPDDELRDELIPVNSKWKVGELLDAAHDYF-LATGRRVSIEYALIKDMNDHAWRA 309 Query: 300 LNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L L A +N IP NP PG + CS+ F + ++R+G ++ +R RG Sbjct: 310 QLLADELNRRDTGWAHVNPIPLNPTPGSIWTCSEVAVQDMFVDTLRRAGITTTVRDTRGS 369 Query: 357 DILAACGQLKSLSKRIPKVP 376 DI ACGQL + +V Sbjct: 370 DIDGACGQLATEVLNQERVK 389 >gi|298705390|emb|CBJ28680.1| conserved unknown protein [Ectocarpus siliculosus] Length = 335 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 121/344 (35%), Positives = 182/344 (52%), Gaps = 26/344 (7%) Query: 29 RHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKW 88 + R Q+ KWI+ G F+ M++I + +R L + ++ E+ ++S DGT+K Sbjct: 2 GEPKFRAKQVLKWIFEGGAESFEDMANIPKTLRAKLAKVATVGALEVAARQVSKDGTKKL 61 Query: 89 LLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147 R I IE+V +P R T C+SSQ GC++ C FC TG R L+A EI Sbjct: 62 AYRLSDGQI-----IESVLMPYSDGRRTACISSQAGCAMGCVFCATGQMGFKRQLSAAEI 116 Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207 Q + G ++SN+V MGMGEPL N+ NV +++ + Sbjct: 117 FEQAYRF--------------SQELQKRGDRLSNVVFMGMGEPLANYKNVMEAVRRINTE 162 Query: 208 MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEML 266 L R IT+ST G VP I R+ +E I V LA+SLHA ++ R L+P+NR++PL L Sbjct: 163 --LGIGARHITISTVGLVPRILRLSQENIQVKLAVSLHAANDRERGALLPVNRRFPLSEL 220 Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGC 324 +DACR Y +S R+TFE+ +++G NDS A L ++L+ + +N+IP NP G Sbjct: 221 MDACREYVDVSGR-RMTFEWALIQGENDSAEVASELGRLLRPLKGMCHVNIIPLNPTDGY 279 Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 + S + F E + ++G + R RG+DI A CGQL + Sbjct: 280 KGGPSMADAVNQFVEVLAKNGVPATPRIRRGIDIDAGCGQLTAK 323 >gi|41409041|ref|NP_961877.1| hypothetical protein MAP2943c [Mycobacterium avium subsp. paratuberculosis K-10] gi|81571119|sp|Q73VR8|RLMN_MYCPA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|41397400|gb|AAS05260.1| hypothetical protein MAP_2943c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 364 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 120/369 (32%), Positives = 183/369 (49%), Gaps = 30/369 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + + A+ ++G+P R Q+ Y R I D + M+D+ +R + Sbjct: 17 RHLADLDADGRASAVAELGLPA----FRAKQLAHQYYGRLIADPRQMTDLPAGLRDAIAD 72 Query: 67 H-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F I+ + TRK L R V +E+V + R T+C+SSQ GC Sbjct: 73 TMFPILLTAASEVTCDAGQTRKTLWRALD-----GVTVESVLMRYPHRNTVCISSQAGCG 127 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG L RNL+ EIL QV + L D G ++SN+V M Sbjct: 128 MACPFCATGQGGLSRNLSTAEILEQVRAGAAALRD-------------DFGDRLSNVVFM 174 Query: 186 GMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 GMGEPL N+ V ++ G S R +T+ST G P I ++ +E +GV LA+S Sbjct: 175 GMGEPLANYARVVAAVRRIVAAPPQGFGISARSVTVSTVGLAPAIRKLADERLGVTLALS 234 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA ++LR+ LVP+N ++ + +DA R+Y ++ R++ EY +++ +ND P A L Sbjct: 235 LHAPDDELRDTLVPVNNRWKIAEALDAARYYADVTGR-RVSVEYALIRDVNDQPWRADLL 293 Query: 303 IKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 + L G +NLIP NP PG ++ S + F ++ +G S +R RG +I Sbjct: 294 GRRLHRALGPLVHVNLIPLNPTPGSQWDASPKPVEREFVRRVRAAGVSCTVRDTRGREIS 353 Query: 360 AACGQLKSL 368 AACGQL + Sbjct: 354 AACGQLAAE 362 >gi|295698544|ref|YP_003603199.1| radical SAM enzyme, Cfr family [Candidatus Riesia pediculicola USDA] gi|291157215|gb|ADD79660.1| radical SAM enzyme, Cfr family [Candidatus Riesia pediculicola USDA] Length = 356 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 143/362 (39%), Positives = 208/362 (57%), Gaps = 13/362 (3%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K +L+ ++ + IG R Q+ WIY +FQ M++ S+++R + Sbjct: 3 NKLNLLQYDILKVRKIFKDIG----ENTFRADQLTDWIYRHYCDNFQSMTNFSRDLRKKM 58 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 F I+ P I ++KIS DGT KW +R + IETV+IPE R TLC+SSQ+GC Sbjct: 59 ESFFQILPPRIQEKKISLDGTIKWRMRTDSE-----ETIETVFIPEGRRKTLCISSQIGC 113 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 L C FC+ +K RNL EI+ QV +A +L + +NIV+ Sbjct: 114 PLKCRFCFVSKKKFRRNLKISEIVGQVWIAGKILRKEISS---VFSKKRNHLLPFTNIVI 170 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MG GEPL NF N+ S+ I + S G +F +++I LST+G P I ++ E + LAISLH Sbjct: 171 MGTGEPLLNFRNILSSIRIITSSHGFNFPEKKIVLSTAGVSPAIEKLLENTQIKLAISLH 230 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN-ARRITFEYVMLKGINDSPRDALNLI 303 A +N +R+ ++PIN+KY ++ ++D+ + + SN +RIT EY+ML+GIND +DA L Sbjct: 231 APNNKIRDRIMPINKKYDIQSILDSIQKFQNHSNIFQRITIEYIMLRGINDEVQDAYQLA 290 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ILK IP KINLIPFN G Y S+ I FSE +K+ + + +R +G DI A+CG Sbjct: 291 DILKNIPVKINLIPFNSTAGIPYKRSNLLHIQQFSEILKKFRFVTTVRKTKGGDIQASCG 350 Query: 364 QL 365 QL Sbjct: 351 QL 352 >gi|23335166|ref|ZP_00120404.1| COG0820: Predicted Fe-S-cluster redox enzyme [Bifidobacterium longum DJO10A] gi|189439272|ref|YP_001954353.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium longum DJO10A] gi|322689304|ref|YP_004209038.1| hypothetical protein BLIF_1118 [Bifidobacterium longum subsp. infantis 157F] gi|189427707|gb|ACD97855.1| Hypothetical Fe-S-cluster redox enzyme [Bifidobacterium longum DJO10A] gi|320460640|dbj|BAJ71260.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis 157F] Length = 389 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 123/374 (32%), Positives = 190/374 (50%), Gaps = 28/374 (7%) Query: 6 KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 K L + M E+ E ++G+P + R Q+ + + +D R Sbjct: 35 KPPLHFVDMTPEQRVEKAAELGLP----KFRVKQLANHYFGHFDVNAAEFTDFPAAKRSE 90 Query: 64 LNQHFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 F V +++ +GT K L + + IE+V + +R TLC+SSQV Sbjct: 91 AAAAFFPQLITEVTRQVADEGTTIKTLWKLFDGSL-----IESVLMRYPTRTTLCISSQV 145 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RN++ EI+ QV +A ++ D + ++SNI Sbjct: 146 GCGMGCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMRD---------GEVAGGEGRLSNI 196 Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239 V MGMGEP+ N+++V ++ S G S R IT+ST G VP I ++ E I V L Sbjct: 197 VFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRL 256 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA S++LR+ LVP+N+++ ++DA Y L++ RR++ EY +++GIND A Sbjct: 257 AVSLHAPSDELRDELVPMNKRFNTAQVLDAAHDYW-LASKRRVSIEYALMRGINDQAEHA 315 Query: 300 LNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L K L A +N IP NP G ++ S +D F E + R+G ++ +R RG Sbjct: 316 QLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQRFLEILHRAGITATLRDTRGQ 375 Query: 357 DILAACGQLKSLSK 370 DI ACGQL + + Sbjct: 376 DIDGACGQLAAKER 389 >gi|312132647|ref|YP_003999986.1| fe-s-cluster redox enzyme [Bifidobacterium longum subsp. longum BBMN68] gi|311773598|gb|ADQ03086.1| Hypothetical Fe-S-cluster redox enzyme [Bifidobacterium longum subsp. longum BBMN68] Length = 389 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 123/374 (32%), Positives = 191/374 (51%), Gaps = 28/374 (7%) Query: 6 KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 K L + M E+ E ++G+P + R Q+ + + +D R Sbjct: 35 KPPLHFVDMTPEQRVEKAAELGLP----KFRVKQLANHYFGHFDVNAAEFTDFPAAKRSE 90 Query: 64 LNQHFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 F V +++ +GT K L + + IE+V + +R TLC+SSQV Sbjct: 91 AAAAFFPQLITEVTRQVADEGTTIKTLWKLFDGSL-----IESVLMRYPTRTTLCISSQV 145 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RN++ EI+ QV +A ++ D + ++SNI Sbjct: 146 GCGMGCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMRD---------GEVAGGEGRLSNI 196 Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239 V MGMGEP+ N+++V ++ S G S R IT+ST G VP I ++ E I V L Sbjct: 197 VFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRL 256 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA S++LR+ LVP+N+++ + ++DA Y L++ RR++ EY +++GIND A Sbjct: 257 AVSLHAPSDELRDELVPMNKRFNTKQVLDAAHDYW-LASKRRVSIEYALMRGINDQAEHA 315 Query: 300 LNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L K L A +N IP NP G ++ S +D F E + R+G ++ +R RG Sbjct: 316 QLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQRFLEILHRAGITATLRDTRGQ 375 Query: 357 DILAACGQLKSLSK 370 DI ACGQL + + Sbjct: 376 DIDGACGQLAAKER 389 >gi|329947859|ref|ZP_08294791.1| 23S rRNA m2A2503 methyltransferase [Actinomyces sp. oral taxon 170 str. F0386] gi|328523483|gb|EGF50581.1| 23S rRNA m2A2503 methyltransferase [Actinomyces sp. oral taxon 170 str. F0386] Length = 391 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 125/380 (32%), Positives = 180/380 (47%), Gaps = 32/380 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + + A G+P R QI + + RD M+D+ R L Sbjct: 32 RHLADLDLAGRKAACKDSGLPS----FRADQISRHYFTHLTRDGADMTDLPASQREQLCA 87 Query: 67 HFSIIYPEIVDEKIS--CDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + PE++ + DG T K L V +E+V + K R TLCVSSQ Sbjct: 88 E---LLPELISPVRALRADGGRTIKHLWELHD-----GVRVESVLMRYKDRTTLCVSSQA 139 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RNL+ EI+ QV A + ++SN+ Sbjct: 140 GCGMACPFCATGQMGLTRNLSTAEIVEQVRHAAQ---------TSAAGDLTGGPARLSNV 190 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239 V MGMGEP+ N+ NV +L D G S R IT+ST G VP I R+ E + V L Sbjct: 191 VFMGMGEPMVNYRNVVGALHRLIDPAPEGFGMSARGITVSTVGLVPLIRRLAGEGLPVTL 250 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA ++LR+ L+P+N ++ + L+DA Y L+ RR++ EY ++K +ND A Sbjct: 251 AVSLHAPDDELRDELIPVNSRWKVGELLDAAHDYF-LATGRRVSIEYALIKDMNDHSWRA 309 Query: 300 LNLIKILKGIPA---KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L L A +N IP NP PG + CS+ F + ++R+G ++ +R RG Sbjct: 310 QLLADELNRRDAGWAHVNPIPLNPTPGSIWTCSEVAVQDMFVDTLRRAGITTTVRDTRGS 369 Query: 357 DILAACGQLKSLSKRIPKVP 376 DI ACGQL + + Sbjct: 370 DIDGACGQLATEVLNQERAK 389 >gi|84498390|ref|ZP_00997187.1| hypothetical protein JNB_19923 [Janibacter sp. HTCC2649] gi|84381890|gb|EAP97773.1| hypothetical protein JNB_19923 [Janibacter sp. HTCC2649] Length = 392 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 120/385 (31%), Positives = 179/385 (46%), Gaps = 32/385 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + E + A+ ++G H R Q+ + R + + M+D+ + VR L Sbjct: 17 RHLADLSPAERKAAVEELG----HKGFRAKQLSTHYFERLVESPEDMTDLPKAVRDDLVA 72 Query: 67 HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 V + G T K + R + +E+V + R T+C+SSQ GC Sbjct: 73 DLLPTLLTPVRTLEADRGATLKSVWRLHDGAL-----VESVLMRYPKRVTICISSQAGCG 127 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD---------------FPGCEDIEGM 170 + C FC TG L RN++A EI+ QV+ A L + E Sbjct: 128 MNCPFCATGQAGLTRNMSAAEIVEQVVDANRKLRHGALPAIGATHPAEAGLGDEAEDEDA 187 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNI 228 ++SN+V MGMGE L N+ ++ +D GL S R IT+ST G VP I Sbjct: 188 ATKVGPERVSNVVFMGMGEALANYKAAIGAIRRLTDPTPDGLGMSARGITMSTVGLVPAI 247 Query: 229 ARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 ++ E I V LA+SLHA ++LR+ LVPIN ++ ++ IDA Y + R++ EY Sbjct: 248 DKLAAEGIPVTLALSLHAPDDELRDELVPINTRWKVDEAIDAAYRYFEATGR-RVSIEYA 306 Query: 288 MLKGINDSPRDALNLIKIL--KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRS 344 ++K IND A L K L +G +N IP NP PG ++ S F E ++ Sbjct: 307 LIKDINDQAWRADLLGKKLTARGKGWVHVNPIPLNPTPGSKWTASRPGVEQQFVERLRAY 366 Query: 345 GYSSPIRTPRGLDILAACGQLKSLS 369 G + +R RG DI ACGQL + + Sbjct: 367 GIPTTVRDTRGSDIDGACGQLAAAT 391 >gi|19553223|ref|NP_601225.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium glutamicum ATCC 13032] gi|62390859|ref|YP_226261.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium glutamicum ATCC 13032] gi|81760328|sp|Q8NP06|RLMN_CORGL RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|21324790|dbj|BAB99413.1| Predicted Fe-S-cluster redox enzyme [Corynebacterium glutamicum ATCC 13032] gi|41326198|emb|CAF20360.1| Predicted Fe-S-cluster redox enzyme [Corynebacterium glutamicum ATCC 13032] Length = 366 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 117/373 (31%), Positives = 183/373 (49%), Gaps = 31/373 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + + E EAL ++G+P + R +QI + Y R D M+D+ + R Sbjct: 16 MPPTHFADLNDEARIEALKELGLP----KFRLNQIARHYYGRLEADPLTMTDLPEGARQE 71 Query: 64 LNQH-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + F + + + D T+K L + + +E+V + R TLC+SSQ Sbjct: 72 VKDALFPTLMSPLRVVETDDDTTQKTLWKLHDGTL-----LESVLMRYSDRSTLCISSQA 126 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RNL+ EI+ QV A + S G ++SNI Sbjct: 127 GCGMACPFCATGQGGLDRNLSIGEIVDQVRNAA--------------ATMQSEGGRLSNI 172 Query: 183 VMMGMGEPLCNFDNVKKSLSIAS--DSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239 V MGMGEPL N+ V ++ + G S+R +T+ST G P I ++ EE+ V L Sbjct: 173 VFMGMGEPLANYKRVVSAVRQITQPSPAGFGISQRSVTVSTVGLAPAIRKLADEEMSVTL 232 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH ++LR+ LVP+N ++P+ ++DA R+Y S R++ EY +++ +ND A Sbjct: 233 AVSLHTPDDELRDTLVPVNNRWPVAEVLDAARYYADKSGR-RVSIEYALIRDVNDQDWRA 291 Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L + L G +NLIP NP PG ++ + + F + G +R +G Sbjct: 292 DMLGEKLHKALGSRVHVNLIPLNPTPGSKWDAAPKARQDEFVRRVIAKGVPCTVRDTKGQ 351 Query: 357 DILAACGQLKSLS 369 +I AACGQL + Sbjct: 352 EIAAACGQLAAEE 364 >gi|212723564|ref|NP_001132113.1| hypothetical protein LOC100193530 [Zea mays] gi|195654259|gb|ACG46597.1| hypothetical protein [Zea mays] Length = 410 Score = 368 bits (945), Expect = e-99, Method: Composition-based stats. Identities = 121/378 (32%), Positives = 182/378 (48%), Gaps = 39/378 (10%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LL 64 + +L+G+ +L + + +G R Q+ +Y + Q + + + R LL Sbjct: 45 RRALLGLSEPQLRQLAIDLG----QQSYRGKQLHDLLYKSRAKQIQEFNHVPKAFREALL 100 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCV 118 +S+ + + DGT K LL+ + IETV IP R T CV Sbjct: 101 GAGWSVGRSPVHHAVTASDGTTKILLKLEDNRL-----IETVGIPVDDDNKGSSRLTACV 155 Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 SSQVGC L CSFC TG RNL EI+ QVL + Sbjct: 156 SSQVGCPLRCSFCATGKGGFARNLQPHEIVEQVLAIEETFKH-----------------R 198 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGV 237 ++N+V MGMGEP+ N +V ++ + L +R +T+ST G I + ++ Sbjct: 199 VTNVVFMGMGEPMMNLKSVLEAHQCFNKE--LKIGQRMMTISTVGVPNTIKMLASHKLQS 256 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 LA+SLHA + LR +VP + YPL L+D C+ Y L RR++FEY +L GIND Sbjct: 257 TLAVSLHAPNQKLRETIVPSAKSYPLGALMDDCKSYF-LETGRRVSFEYTLLAGINDEKE 315 Query: 298 DALNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 A L ++L+ G +NLIP+NP G EY +K + F + ++ + +R RG Sbjct: 316 HAEELAELLRMCGGGYHVNLIPYNPIEGSEYKRPYRKVVQAFVDALEARKITVSVRRTRG 375 Query: 356 LDILAACGQLKSLSKRIP 373 LD AACGQL++ ++ P Sbjct: 376 LDANAACGQLRNEFQKNP 393 >gi|183981843|ref|YP_001850134.1| hypothetical protein MMAR_1830 [Mycobacterium marinum M] gi|205829814|sp|B2HJP3|RLMN_MYCMM RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|183175169|gb|ACC40279.1| conserved hypothetical protein [Mycobacterium marinum M] Length = 364 Score = 368 bits (945), Expect = e-99, Method: Composition-based stats. Identities = 123/370 (33%), Positives = 186/370 (50%), Gaps = 32/370 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L E A+ +G+P R Q+ Y R I D + M+D+ VR + + Sbjct: 17 RHLADFDAEGRASAVAALGLPP----FRAKQLAHQYYGRLIADPRQMTDLPAAVREQIAE 72 Query: 67 HFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +++CD TRK L R V +E+V + R T+C+SSQ GC Sbjct: 73 TMFPNLLT-AAREVTCDAGQTRKTLWR-----ATDGVTLESVLMRYPQRNTVCISSQAGC 126 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EIL QV A + L D G ++SN+V Sbjct: 127 GMACPFCATGQGGLTRNLSTAEILEQVRAAAAALRD-------------EFGDRLSNVVF 173 Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 MGMGEPL N+ V ++ ++ MG S R +T+ST G P I ++ +E +GV LA+ Sbjct: 174 MGMGEPLANYARVLAAVRRITEPPPMGFGISARSVTVSTVGLAPAIRKLADERLGVTLAL 233 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++LR+ LVP+N ++ + ++A +Y ++ R++ EY +++ +ND P A Sbjct: 234 SLHAPDDELRDTLVPVNNRWKISEALEAAHYYAEVTGR-RVSVEYALIREVNDQPWRADL 292 Query: 302 LIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 L K L G +NLIP NP PG ++ S + F + ++ G S +R RG +I Sbjct: 293 LGKRLHRALGPLVHVNLIPLNPTPGSDWDASPKPVEREFVKRVRAQGVSCTVRDTRGREI 352 Query: 359 LAACGQLKSL 368 AACGQL + Sbjct: 353 SAACGQLAAE 362 >gi|300087719|ref|YP_003758241.1| Cfr family radical SAM protein [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527452|gb|ADJ25920.1| radical SAM enzyme, Cfr family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 341 Score = 368 bits (944), Expect = e-99, Method: Composition-based stats. Identities = 123/368 (33%), Positives = 181/368 (49%), Gaps = 35/368 (9%) Query: 4 LKKE----SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59 + K +L+GM EL + +G R +Q+ +W+Y R M+++ Sbjct: 1 MDKPETTRTLLGMNTAELRQLAETLGQSA----FRGNQLAEWLYHRDAAAIAEMTNLPAA 56 Query: 60 VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119 R+ L + + P ++ + S DGT K LL F ++ETV +P R + CVS Sbjct: 57 FRYRLAECYPTGRPVVITRRQSDDGTLKLLLEF-----ADGEQVETVGLPYHDRYSCCVS 111 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 +Q GC + C+FC TG R L+A EI+ QVL GR++ Sbjct: 112 TQAGCPVGCAFCATGQGGYRRQLSAGEIVAQVLAVSR-----------------EAGRRV 154 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238 ++ MGMGEPL N+D K+L + D +G + R +T+ST G VP I R+ E + V Sbjct: 155 DHVTFMGMGEPLLNYDATVKALHLLRDEVG--IAARHLTVSTIGHVPGILRLARENLPVT 212 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLH R L+P R P ++ A R + L+ R+T EY +L G+ND P D Sbjct: 213 LALSLHTPDEVTRRRLIPGLRSTP-AEIVTAGREHFALTGR-RLTVEYCLLDGVNDRPED 270 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L +L+G INLIPFNP + S + F ++ +G+ R RG DI Sbjct: 271 ASALAVLLEGTGFHINLIPFNPTDDLPFRPSPATTVERFMNRLRAAGFEVTARVRRGADI 330 Query: 359 LAACGQLK 366 AACGQL+ Sbjct: 331 EAACGQLR 338 >gi|225352146|ref|ZP_03743169.1| hypothetical protein BIFPSEUDO_03761 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157393|gb|EEG70732.1| hypothetical protein BIFPSEUDO_03761 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 393 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 125/374 (33%), Positives = 187/374 (50%), Gaps = 28/374 (7%) Query: 6 KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 K L M +E +G+P + R Q+ Y + SD R Sbjct: 38 KPPLHFADMTEDERIAKAKDLGLP----KFRVKQLANHYYGHFDVAAEEFSDFPAAKRAE 93 Query: 64 LNQHFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + F V +++ +GT K L R + IE+V + +R TLC+SSQV Sbjct: 94 AAEAFFPTLITEVTRQVADEGTTIKTLWRLFDGSL-----IESVLMRYPTRTTLCISSQV 148 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RN++A EIL QV +A + D + ++SNI Sbjct: 149 GCGMGCPFCATGQLGLTRNMSAGEILEQVRVAAKAMHD---------GEVAGGLGRLSNI 199 Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239 V MGMGEP+ N+ +V ++ S G S R IT+ST G VP I ++ E I V L Sbjct: 200 VFMGMGEPMGNYKSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRL 259 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA S++LR+ LVP+N+++ ++DA Y L++ RR++ EY +++GIND A Sbjct: 260 AVSLHAPSDELRDELVPMNKRFNTTQVLDAAHDYY-LASKRRVSIEYALMRGINDQAEHA 318 Query: 300 LNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L K L A +N IP NP G ++ S +D F + + ++G ++ +R RG Sbjct: 319 KLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQQFLDILHKAGITATLRDTRGQ 378 Query: 357 DILAACGQLKSLSK 370 DI ACGQL + + Sbjct: 379 DIDGACGQLAAKEQ 392 >gi|213691945|ref|YP_002322531.1| radical SAM enzyme, Cfr family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523406|gb|ACJ52153.1| radical SAM enzyme, Cfr family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458052|dbj|BAJ68673.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 389 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 123/374 (32%), Positives = 190/374 (50%), Gaps = 28/374 (7%) Query: 6 KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 K L + M E+ E ++G+P + R Q+ + + +D R Sbjct: 35 KPPLHFVDMTPEQRIEKAAELGLP----KFRVKQLANHYFGHFDVNAAEFTDFPAAKRSE 90 Query: 64 LNQHFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 F V +++ +GT K L + + IE+V + +R TLC+SSQV Sbjct: 91 AAAAFFPQLITEVTRQVADEGTTIKTLWKLFDGSL-----IESVLMRYPTRTTLCISSQV 145 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RN++ EI+ QV +A ++ D + ++SNI Sbjct: 146 GCGMGCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMRD---------GEVAGGAGRLSNI 196 Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239 V MGMGEP+ N+++V ++ S G S R IT+ST G VP I ++ E I V L Sbjct: 197 VFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRL 256 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA S++LR+ LVP+N+++ ++DA Y L++ RR++ EY +++GIND A Sbjct: 257 AVSLHAPSDELRDELVPMNKRFNTTQVLDAAHDYW-LASKRRVSIEYALMRGINDQAEHA 315 Query: 300 LNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L K L A +N IP NP G ++ S +D F E + R+G ++ +R RG Sbjct: 316 QLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQRFLEILHRAGITATLRDTRGQ 375 Query: 357 DILAACGQLKSLSK 370 DI ACGQL + + Sbjct: 376 DIDGACGQLAAKER 389 >gi|33241085|ref|NP_876027.1| putative Fe-S-cluster redox protein [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|81663987|sp|Q7VA32|RLMN_PROMA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|33238614|gb|AAQ00680.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 348 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 122/372 (32%), Positives = 188/372 (50%), Gaps = 37/372 (9%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K L+G+ +LE L G R Q+ +W+Y +G+ + ++ + + R+ L Sbjct: 5 KIQLLGLDLSQLERLALDHG----ESLYRGRQLHQWLYQKGVDNLDDITVLPKAWRNSLI 60 Query: 66 QH-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q S+ V+ I+ D T K LL G IETV IP +R T+CVSSQ+GC Sbjct: 61 QKGISVGGLVEVNRFIAGDRTIKLLL-----STGDGEIIETVGIPSGNRLTICVSSQIGC 115 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L R+L EI+ QV + + R SN+V Sbjct: 116 PMGCQFCATGKDGLKRSLKVNEIVAQVFAVKK-----------------AFNRSPSNVVF 158 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIGV 237 MGMGEPL N + V S+ + L +RRIT+ST G + ++ E + Sbjct: 159 MGMGEPLLNIEEVLSSICCLNKD--LGIGQRRITVSTVGVKNTLPQLAELALQFLGSVQF 216 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 LA+SLHA + LR L+P + YP+++L++ CRHY L+ R++FEY++L +ND Sbjct: 217 TLALSLHAPNQKLRESLIPSAQNYPIKLLLEDCRHYLDLTGR-RVSFEYILLGHLNDHIE 275 Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 A L ++ G + +NLI +NP G + + + F + +++ G +R RGLD Sbjct: 276 HAEELADLVGGFQSHVNLIAYNPIDGESFQRPSNQRVNIFIKTLQKRGIVVSLRASRGLD 335 Query: 358 ILAACGQLKSLS 369 AACGQL+S++ Sbjct: 336 KNAACGQLRSMN 347 >gi|332295839|ref|YP_004437762.1| Ribosomal RNA large subunit methyltransferase N [Thermodesulfobium narugense DSM 14796] gi|332178942|gb|AEE14631.1| Ribosomal RNA large subunit methyltransferase N [Thermodesulfobium narugense DSM 14796] Length = 353 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 137/364 (37%), Positives = 207/364 (56%), Gaps = 25/364 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K S + ELE+ +G + R +Q++ W+Y I DF MS++S +R L Sbjct: 1 MNKRSFFELSFSELEKFFTDLGFS----KYRANQVFSWVYKNNIYDFMQMSNLSLNLRDL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L+ F + +P+I S D + K+LL +G IETV+I K+R T+C+SSQ+G Sbjct: 57 LSSSFDLSFPKIQSTVESADNSFKFLL-----HLGENDFIETVFINHKNRNTICISSQIG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C C TG RNL EI+LQV+ + + G KI NIV Sbjct: 112 CPVGCVMCSTGKIGFKRNLKVSEIVLQVMAVENFVRSKMG--------------KIDNIV 157 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 MGMGEP+ NFDNV K++ I +D G SFS RRI +STSGFV I ++ E + + LA+S Sbjct: 158 FMGMGEPMLNFDNVIKAIKILTDKNGKSFSPRRIVISTSGFVDGIKKLKEVGLPIKLAVS 217 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA ++++R+ L+PIN+ + + LI A Y L++ RR+T+EYV+++ INDS +D + L Sbjct: 218 LHATTDEIRSKLIPINKTFGISELIKASEEY-ALASKRRVTYEYVLMESINDSDQDIIRL 276 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LKG+ A +NL+ +N + ++ + I F + + G + IR +G DI AC Sbjct: 277 KDLLKGLHAHVNLVKYNQSLSNVRIKTNIRRIKLFEKMLNNFGIKTTIRFSKGEDINGAC 336 Query: 363 GQLK 366 GQL Sbjct: 337 GQLA 340 >gi|322691316|ref|YP_004220886.1| hypothetical protein BLLJ_1127 [Bifidobacterium longum subsp. longum JCM 1217] gi|320456172|dbj|BAJ66794.1| conserved hypothetical protein [Bifidobacterium longum subsp. longum JCM 1217] Length = 389 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 123/374 (32%), Positives = 191/374 (51%), Gaps = 28/374 (7%) Query: 6 KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 K L + M E+ E ++G+P + R Q+ + + +D R Sbjct: 35 KPPLHFVDMTPEQRVEKAAELGLP----KFRVKQLANHYFGHFDVNAAEFTDFPAAKRSE 90 Query: 64 LNQHFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 F V +++ +GT K L + + IE+V + +R TLC+SSQV Sbjct: 91 AAAAFFPRLITEVTRQVADEGTTIKTLWKLFDGSL-----IESVLMRYPTRTTLCISSQV 145 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RN++ EI+ QV +A ++ D + ++SNI Sbjct: 146 GCGMDCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMRD---------GEVAGGEGRLSNI 196 Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239 V MGMGEP+ N+++V ++ S G S R IT+ST G VP I ++ E I V L Sbjct: 197 VFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRL 256 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA S++LR+ LVP+N+++ + ++DA Y L++ RR++ EY +++GIND A Sbjct: 257 AVSLHAPSDELRDELVPMNKRFNTKQVLDAAHDYW-LASKRRVSIEYALMRGINDQAEHA 315 Query: 300 LNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L K L A +N IP NP G ++ S +D F E + R+G ++ +R RG Sbjct: 316 QLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQRFLEILHRAGITATLRDTRGQ 375 Query: 357 DILAACGQLKSLSK 370 DI ACGQL + + Sbjct: 376 DIDGACGQLAAKER 389 >gi|227547301|ref|ZP_03977350.1| possible Fe-S-cluster redox enzyme [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227212260|gb|EEI80156.1| possible Fe-S-cluster redox enzyme [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 389 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 124/374 (33%), Positives = 191/374 (51%), Gaps = 28/374 (7%) Query: 6 KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 K L + M E+ E ++G+P + R Q+ + + +D R Sbjct: 35 KPPLHFVDMTPEQRVEKAAELGLP----KFRVKQLANHYFGHFDVNAAEFTDFPAAKRSE 90 Query: 64 LNQHFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 F V +++ +GT K L + + IE+V + +R TLC+SSQV Sbjct: 91 AAAAFFPQLITEVTRQVADEGTTIKTLWKLFDGSL-----IESVLMRYPTRTTLCISSQV 145 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RN++ EI+ QV +A ++ D + ++SNI Sbjct: 146 GCGMGCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMRD---------GEVAGGEGRLSNI 196 Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239 V MGMGEP+ N+++V ++ S G S R IT+ST G VP I ++ E I V L Sbjct: 197 VFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRL 256 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA S++LR+ LVP+N+++ + ++DA Y L++ RR++ EY +++GIND A Sbjct: 257 AVSLHAPSDELRDELVPMNKRFNTKQVLDAAHDYW-LASKRRVSIEYALMRGINDQAEHA 315 Query: 300 LNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L K L A +N IP NP G ++ S +D F E + RSG ++ +R RG Sbjct: 316 QLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQRFLEILHRSGITATLRDTRGQ 375 Query: 357 DILAACGQLKSLSK 370 DI ACGQL + + Sbjct: 376 DIDGACGQLAAKER 389 >gi|23466064|ref|NP_696667.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium longum NCC2705] gi|81753640|sp|Q8G481|RLMN_BIFLO RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|23326790|gb|AAN25303.1| widely conserved hypothetical protein [Bifidobacterium longum NCC2705] Length = 389 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 123/374 (32%), Positives = 191/374 (51%), Gaps = 28/374 (7%) Query: 6 KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 K L + M E+ E ++G+P + R Q+ + + +D R Sbjct: 35 KPPLHFVDMTPEQRVEKAAELGLP----KFRVKQLANHYFGHFDVNAAEFTDFPAAKRSE 90 Query: 64 LNQHFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 F V +++ +GT K L + + IE+V + +R TLC+SSQV Sbjct: 91 AAAAFFPQLITEVTRQVADEGTTIKTLWKLFDGSL-----IESVLMRYPTRTTLCISSQV 145 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RN++ EI+ QV +A ++ D + ++SNI Sbjct: 146 GCGMDCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMRD---------GEVAGGEGRLSNI 196 Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239 V MGMGEP+ N+++V ++ S G S R IT+ST G VP I ++ E I V L Sbjct: 197 VFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRL 256 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA S++LR+ LVP+N+++ + ++DA Y L++ RR++ EY +++GIND A Sbjct: 257 AVSLHAPSDELRDELVPMNKRFNTKQVLDAAHDYW-LASKRRVSIEYALMRGINDQAEHA 315 Query: 300 LNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L K L A +N IP NP G ++ S +D F E + R+G ++ +R RG Sbjct: 316 QLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQRFLEILHRAGITATLRDTRGQ 375 Query: 357 DILAACGQLKSLSK 370 DI ACGQL + + Sbjct: 376 DIDGACGQLAAKER 389 >gi|315604531|ref|ZP_07879594.1| cfr family radical SAM enzyme [Actinomyces sp. oral taxon 180 str. F0310] gi|315313543|gb|EFU61597.1| cfr family radical SAM enzyme [Actinomyces sp. oral taxon 180 str. F0310] Length = 422 Score = 367 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 124/372 (33%), Positives = 181/372 (48%), Gaps = 32/372 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 L + ++ + +G P R Q+ + + D MSDI +R + + Sbjct: 62 HLADLDSAARKQVVKDLGFPA----FRADQLSRHYFSHFEADPARMSDIPAGMREAVAEA 117 Query: 68 FSIIYPEIVDEKIS--CDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + P +V + +S DG T K L R ++E+V + R TLCVSSQ G Sbjct: 118 ---LLPHLVTKVVSLEADGGRTIKDLWRLYD-----GAQVESVLMRYPQRTTLCVSSQAG 169 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG L RNL+ EI+ QV A++ D + +SN+V Sbjct: 170 CGMACPFCATGQMGLTRNLSTAEIVDQVRAAQASCRD---------GALAGGPTTLSNVV 220 Query: 184 MMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLA 240 MGMGEPL N+ V +L D G S R IT+ST G VP I ++ E + V LA Sbjct: 221 FMGMGEPLANYKTVVAALHRLIDPAPEGFGMSARNITVSTVGLVPAIKKLAGEGMPVTLA 280 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA +DLR+ L+PIN ++ + L+DA R Y L+ RR++ EY ++K +ND A Sbjct: 281 VSLHAPDDDLRDDLIPINSRWKVGELLDAARGYF-LATGRRVSIEYALIKDMNDQEWRAQ 339 Query: 301 NLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 L L +N IP NP PG + S ++ F ++ +G ++ IR RG D Sbjct: 340 LLADELNRRGHGWVHVNPIPLNPTPGSIWTASTRRAQHAFVSRLRDNGIATSIRDTRGSD 399 Query: 358 ILAACGQLKSLS 369 I ACGQL + Sbjct: 400 IDGACGQLATAH 411 >gi|224098427|ref|XP_002311170.1| predicted protein [Populus trichocarpa] gi|222850990|gb|EEE88537.1| predicted protein [Populus trichocarpa] Length = 441 Score = 367 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 125/382 (32%), Positives = 187/382 (48%), Gaps = 27/382 (7%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH- 67 L+GM EL++ +G R Q+ IY R +++ Q S + R+ L + Sbjct: 55 LLGMSEPELQQLATDLG----QQSYRGKQLHHLIYQRKVKEIQDFSQLPLVFRNDLQEAG 110 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVSSQV 122 + + I + DGT K L+R + IETV IP + R T CVSSQV Sbjct: 111 WKVGRSPIFQTVTAADGTVKLLIRLEDNRL-----IETVGIPVEDEKGSMRLTACVSSQV 165 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG------MVIPSVG 176 GC L CSFC TG RNL EI+ Q L S + V Sbjct: 166 GCPLRCSFCATGKGGFSRNLQRHEIVEQHRLGSSGTTSTCSKLYLHVLYAQVLAVEEIFK 225 Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEI 235 +++N+V MGMGEP+ N +V ++ + + +R IT+ST G I ++ ++ Sbjct: 226 HRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASHKL 283 Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 LA+SLHA + LR +VP + YPL+ ++ C+ Y L +RR++FEY +L G+ND Sbjct: 284 QSTLALSLHAPNQKLRETIVPSAKSYPLDAIMKDCKEYF-LETSRRVSFEYALLAGVNDR 342 Query: 296 PRDALNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353 A L ++L G +NLIPFNP G +Y +K I F+ ++ + +R Sbjct: 343 VEHAKELAELLHQWGRGHHVNLIPFNPIQGSDYKRPHKKAIQAFAAVLESRKVTVSVRQT 402 Query: 354 RGLDILAACGQLKSLSKRIPKV 375 RGLD AACGQL++ ++ P V Sbjct: 403 RGLDASAACGQLRNEFQKSPLV 424 >gi|194476577|ref|YP_002048756.1| hypothetical protein PCC_0094 [Paulinella chromatophora] gi|171191584|gb|ACB42546.1| hypothetical protein PCC_0094 [Paulinella chromatophora] Length = 350 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 127/375 (33%), Positives = 184/375 (49%), Gaps = 36/375 (9%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 N L + L+GM + LE + G R QI +W+Y++G RD + ++ + + R Sbjct: 4 NALDRIPLLGMGQLALETWAVAHG----QAAFRGRQIHEWMYLKGERDIESITVLPKSWR 59 Query: 62 HLL-NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 L + + + +IS DGT K LL+ IETV IP R T+CVSS Sbjct: 60 EQLIMANIQLGRSRELQRQISSDGTIKLLLQ----STSDSETIETVGIPTAQRLTVCVSS 115 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC + C FC TG L R+L EIL QVL R ++ R+ + Sbjct: 116 QAGCPMACQFCATGKGGLQRSLLTHEILDQVLSIRRVM-----------------DRRPT 158 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE------- 233 +IV MGMGEPL N + V +S+ +D S+RRIT+ST G + + E Sbjct: 159 HIVFMGMGEPLLNIEAVLESIQSLNDD--FGISQRRITISTVGVPRTLPLLAELALKRLD 216 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 LA+SLHA + LR L+P Y L+ +++ CRHY ++ R++FEY++L G+N Sbjct: 217 RAQFTLAVSLHAPNQSLREKLIPSATAYSLDNILEDCRHYLAITGR-RVSFEYILLGGVN 275 Query: 294 DSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353 D A L + G + +NLI +NP + + I F +K G S +R Sbjct: 276 DQTFHAEELADRVSGFQSHVNLIAYNPIDDEVFKRPNIFRIERFLSILKHRGLSVSLRAS 335 Query: 354 RGLDILAACGQLKSL 368 RGLD AACGQL+ Sbjct: 336 RGLDKNAACGQLRRR 350 >gi|317482872|ref|ZP_07941880.1| cfr family radical SAM enzyme [Bifidobacterium sp. 12_1_47BFAA] gi|291516841|emb|CBK70457.1| 23S rRNA m(2)A-2503 methyltransferase [Bifidobacterium longum subsp. longum F8] gi|316915717|gb|EFV37131.1| cfr family radical SAM enzyme [Bifidobacterium sp. 12_1_47BFAA] Length = 389 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 123/374 (32%), Positives = 191/374 (51%), Gaps = 28/374 (7%) Query: 6 KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 K L + M E+ E ++G+P + R Q+ + + +D R Sbjct: 35 KPPLHFVDMTPEQRIEKAAELGLP----KFRVKQLANHYFGHFDVNAAEFTDFPAAKRSE 90 Query: 64 LNQHFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 F V +++ +GT K L + + IE+V + +R TLC+SSQV Sbjct: 91 AAAAFFPQLITEVTRQVADEGTTIKTLWKLFDGSL-----IESVLMRYPTRTTLCISSQV 145 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RN++ EI+ QV +A ++ D + ++SNI Sbjct: 146 GCGMDCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMRD---------GEVAGGEGRLSNI 196 Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239 V MGMGEP+ N+++V ++ S G S R IT+ST G VP I ++ E I V L Sbjct: 197 VFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRL 256 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA S++LR+ LVP+N+++ + ++DA Y L++ RR++ EY +++GIND A Sbjct: 257 AVSLHAPSDELRDELVPMNKRFNTKQVLDAAHDYW-LASKRRVSIEYALMRGINDQAEHA 315 Query: 300 LNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L K L A +N IP NP G ++ S +D F E + R+G ++ +R RG Sbjct: 316 QLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQRFLEILHRAGITATLRDTRGQ 375 Query: 357 DILAACGQLKSLSK 370 DI ACGQL + + Sbjct: 376 DIDGACGQLAAKER 389 >gi|319441379|ref|ZP_07990535.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium variabile DSM 44702] Length = 370 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 123/375 (32%), Positives = 187/375 (49%), Gaps = 28/375 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + L + +E++ A+ G+P R +QI + Y R D M+D+ + +R Sbjct: 16 MPPTHLADLTDDEVKAAVKDAGLPG----FRANQIARQYYGRLEGDPMAMTDLPENLRST 71 Query: 64 LNQHFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 + + V ISCD TRK L + + +E+V + R TLC+SSQ Sbjct: 72 VKDTLFPTLMDPV-RHISCDEGQTRKTLWKLHDSTL-----LESVLMRYPDRATLCISSQ 125 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC + C FC TG L RNL+ EI+ QV A + D + ++SN Sbjct: 126 AGCGMACPFCATGQGGLDRNLSTGEIVEQVRAAARAMRDGD---------VEGGEGRLSN 176 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238 IV MGMGEPL N+ V ++ + G S+R IT+ST G P I ++ +E + + Sbjct: 177 IVFMGMGEPLANYKRVVAAIKRITSPSPEGFGISQRNITVSTVGLAPAIRKLADEDMHMR 236 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLH ++LR+ LVP+N ++ +E ++DA +Y S R++ EY ++K +ND P Sbjct: 237 LAVSLHCPDDELRDTLVPVNNRWSIEEVLDAAAYYAEKSGR-RVSIEYALIKEVNDHPWR 295 Query: 299 ALNLIKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 A L K LK +NLIP NP PG E+ S + F + G + +R RG Sbjct: 296 ADLLGKRLKKKLGNQVHVNLIPLNPTPGSEWDASPKPVQDEFVRRVNEQGVACTVRDTRG 355 Query: 356 LDILAACGQLKSLSK 370 +I AACGQL + + Sbjct: 356 QEIAAACGQLAAEER 370 >gi|311744125|ref|ZP_07717931.1| cfr family radical SAM enzyme [Aeromicrobium marinum DSM 15272] gi|311313255|gb|EFQ83166.1| cfr family radical SAM enzyme [Aeromicrobium marinum DSM 15272] Length = 380 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 123/376 (32%), Positives = 179/376 (47%), Gaps = 32/376 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + EE A ++G P R Q+ Y R RD M+D+ R + Sbjct: 24 RHLADLSTEERTAAAAELGEPA----FRVKQVAHHYYARLERDPAAMTDLPAANRDRIAA 79 Query: 67 HFSIIYPEIVDEKISCDGTR-KWLLRFPARCIGGPVEIETVYIPE-----KSRGTLCVSS 120 + V + GT K L R + +E+V + R T+CVSS Sbjct: 80 ALLPTLLDPVRTMEADRGTTVKNLWRLFDGAL-----VESVLMRYLSADGPGRATICVSS 134 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC + C FC TG L RN++ EI+ QV+ A + + ++S Sbjct: 135 QAGCGMACPFCATGQGGLQRNMSTAEIVDQVVDAA---------GRMARGEVAGGPGRLS 185 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGV 237 N+V MGMGEP+ N+ V ++ GL S R ITLST G VP I ++ EE I V Sbjct: 186 NVVFMGMGEPMANYRAVVGAIRRMVAPAPDGLGLSARNITLSTVGLVPRIRQLTEEGIPV 245 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 LA+SLHA ++LR+ LVPIN ++ ++ ++DA R Y + R++ EY M++ IND Sbjct: 246 TLAVSLHAPDDELRDTLVPINTRWKVDEVVDAARAYFDATGR-RVSIEYAMMRDINDQAW 304 Query: 298 DALNLIKILKGIP----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353 A L +L +NLIP NP PG ++ S ++D F ++ G S+ +R Sbjct: 305 RADLLGDVLTARGGIGWVHVNLIPLNPTPGSKWTASRREDEREFVRRLEAKGISTTVRDT 364 Query: 354 RGLDILAACGQLKSLS 369 RG DI ACGQL + Sbjct: 365 RGSDIDGACGQLAAAE 380 >gi|291299709|ref|YP_003510987.1| radical SAM enzyme, Cfr family [Stackebrandtia nassauensis DSM 44728] gi|290568929|gb|ADD41894.1| radical SAM enzyme, Cfr family [Stackebrandtia nassauensis DSM 44728] Length = 388 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 122/375 (32%), Positives = 187/375 (49%), Gaps = 27/375 (7%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 L + EE EA+ ++ P R +Q+ + Y R M+D+ R Sbjct: 15 RSLPPRHFADLTMEERREAVRELDEPA----FRANQLSRQYYTRHETSVSRMTDLPVASR 70 Query: 62 HLLNQHFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 + + + + DGT RK L R + +E+V + R T+CVSS Sbjct: 71 DKIAEALFPALLTPIKDTECDDGTTRKTLYRLHDGSL-----VESVLMGYPDRATVCVSS 125 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC + C FC TG L RN++ EI+ QV+ A L ++S Sbjct: 126 QAGCGMACPFCATGQAGLTRNMSTAEIVEQVVNAARLAEQAKLG-------------RLS 172 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGV 237 ++V MGMGEPL N+ V +L +D GL S R IT+ST G VP I R+ +E + V Sbjct: 173 HVVFMGMGEPLANYSRVVAALRRVTDPTPGGLGLSARHITVSTVGLVPAIRRLTDEDMSV 232 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 LA+SLHA ++LR+ LVP+N ++ + ++DA +Y + R++ EY M++ +ND P Sbjct: 233 TLAVSLHAPDDELRDELVPVNSRWKVAEVLDAAWNYARRTGR-RVSIEYAMIRDVNDQPW 291 Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 A L ++LKG A +NLIP NP PG ++ S + F ++ +G + +R RG D Sbjct: 292 RADLLGRLLKGKLAHVNLIPLNPTPGSKWDASPKPVEREFVARLRAAGVPTTVRDTRGRD 351 Query: 358 ILAACGQLKSLSKRI 372 I ACGQL + + + Sbjct: 352 IDGACGQLAASQQDV 366 >gi|284992364|ref|YP_003410918.1| radical SAM enzyme, Cfr family [Geodermatophilus obscurus DSM 43160] gi|284065609|gb|ADB76547.1| radical SAM enzyme, Cfr family [Geodermatophilus obscurus DSM 43160] Length = 395 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 126/369 (34%), Positives = 184/369 (49%), Gaps = 26/369 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + REE A+ ++G P R Q+ + Y RG+ D M+D+ VR L Sbjct: 18 RHLADLTREEARAAVTELGQPA----FRADQLTRHFY-RGVTDPAQMTDLPAAVREELTG 72 Query: 67 HFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 V +S DG TRK L R + +E+V + R T+C+SSQ GC Sbjct: 73 ALLPGLLTPV-RTLSADGGRTRKTLWRLHDGAL-----VESVLMRYPDRATVCISSQAGC 126 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+A EI+ Q + +P ++SN+V Sbjct: 127 GMACPFCATGQNGLTRNLSAAEIIGQ---------AVAAAAAMANGEVPGGPGRLSNVVF 177 Query: 185 MGMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 MGMGEPL N+ V+K+L GL S+R +T+ST G VP I R+ EE + V LA+ Sbjct: 178 MGMGEPLANYARVRKTLDALVTPAPHGLGLSQRSVTVSTVGVVPAIRRLTEEGLHVTLAV 237 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++LR+ LVPIN ++ + ++ A Y + R + EY +++ +ND P A Sbjct: 238 SLHAPDDELRDTLVPINTRWKVGEVVAAADAYAERTGR-RYSVEYALIRDVNDQPERADL 296 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++L A +NLIP NP PG ++ S F ++ G + +R RG DI A Sbjct: 297 LGRLLADRRAHVNLIPLNPTPGSKWDASPLPAQREFVARLRAHGVPTTVRDTRGQDIDGA 356 Query: 362 CGQLKSLSK 370 CGQL + + Sbjct: 357 CGQLAAADR 365 >gi|86742258|ref|YP_482658.1| ribosomal RNA large subunit methyltransferase N [Frankia sp. CcI3] gi|123764529|sp|Q2J713|RLMN_FRASC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|86569120|gb|ABD12929.1| 23S rRNA m(2)A-2503 methyltransferase [Frankia sp. CcI3] Length = 421 Score = 366 bits (941), Expect = 2e-99, Method: Composition-based stats. Identities = 124/380 (32%), Positives = 182/380 (47%), Gaps = 26/380 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGI--RDFQGMSDISQEVRHLL 64 L + R+E + + +G P R Q+ + Y R I + + M+D+ + R L Sbjct: 36 RHLADLTRQERRDVAVSLGQPA----FRADQVARHYYARLIAADEPEAMTDLPERDRQPL 91 Query: 65 NQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 V DG TRK R +E+V + R T+CVSSQ G Sbjct: 92 LDALLPRLLVPVRTLSCDDGLTRKTAWRTVD-----GASLESVIMRYPDRATVCVSSQAG 146 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG L RNL+ EI+ QV+ A +L + ++SN+V Sbjct: 147 CGMGCPFCATGQGGLTRNLSTAEIVEQVVHAARVLR---------RRELAGGETRLSNVV 197 Query: 184 MMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLA 240 MGMGEPL N+ V +L + GL S R +T+ST G VP I R+ E + V LA Sbjct: 198 FMGMGEPLANYAAVIAALRRLTAHPPEGLGLSARGLTVSTVGLVPAIRRLAGEGLPVTLA 257 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA + LRN LVPIN ++P+ ++ A Y ++ R++ EY ++ G+ND A Sbjct: 258 VSLHAPDDVLRNELVPINTRWPVVEVLAAAWEYAEVTGR-RVSVEYALIDGVNDDVGRAD 316 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L +L G A +NLIP NP G + S F ++ G + +R RG +I A Sbjct: 317 ALADLLVGRLAHVNLIPLNPTGGSSWRASAPAGQRAFVRRLRDRGIVTTVRDTRGREIAA 376 Query: 361 ACGQLKSL-SKRIPKVPRQE 379 ACGQL + + + + R E Sbjct: 377 ACGQLAAEPAGKPERTDRPE 396 >gi|260578946|ref|ZP_05846849.1| Cfr family radical SAM enzyme [Corynebacterium jeikeium ATCC 43734] gi|258602920|gb|EEW16194.1| Cfr family radical SAM enzyme [Corynebacterium jeikeium ATCC 43734] Length = 345 Score = 366 bits (941), Expect = 3e-99, Method: Composition-based stats. Identities = 121/367 (32%), Positives = 188/367 (51%), Gaps = 31/367 (8%) Query: 11 GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70 + E L+E + ++G+P + R QI + Y R D M+D+ + R + + Sbjct: 3 DLDEETLKERVQELGLP----KFRADQIRRQYYGRLQGDPMEMTDLPESKRAAVKEALFP 58 Query: 71 IYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129 + + + DG TRK L R + +E+V + R TLC+SSQ GC + C Sbjct: 59 ELMQPMRNMDADDGETRKTLWRLHDGTM-----LESVLMRYPGRATLCISSQAGCGMACP 113 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 FC TG L RNL+ E++ Q A S + + G ++SNIV MGMGE Sbjct: 114 FCATGQGGLDRNLSVGEMVEQARAAASTMQE--------------EGGRLSNIVFMGMGE 159 Query: 190 PLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAV 246 PL N+ V +++ S G S+R IT+ST G P I ++ EE+ V LA+SLH Sbjct: 160 PLANYKRVVETIRKVSAPAPDGFGISQRNITVSTVGLAPAIRKLADEEMKVRLAVSLHTP 219 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++LR+ LVP+N ++ +E ++DA R+Y S R++ EY +++ +ND P A L K L Sbjct: 220 DDELRDELVPVNNRWSVEEVLDAARYYADTSGR-RVSIEYALIRDMNDQPWRADLLGKKL 278 Query: 307 KG---IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +G +NLIP NP PG ++ S + F ++ G +R +G +I AACG Sbjct: 279 RGALGTKVHVNLIPLNPTPGSKWDASPKDRQDEFVRRVEAQGVPCTVRDTKGQEIAAACG 338 Query: 364 QLKSLSK 370 QL + + Sbjct: 339 QLAAEER 345 >gi|145295923|ref|YP_001138744.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium glutamicum R] gi|205829740|sp|A4QF26|RLMN_CORGB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|140845843|dbj|BAF54842.1| hypothetical protein [Corynebacterium glutamicum R] Length = 366 Score = 366 bits (941), Expect = 3e-99, Method: Composition-based stats. Identities = 116/373 (31%), Positives = 183/373 (49%), Gaps = 31/373 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + + E EAL ++G+P + R +QI + Y R D M+D+ + R Sbjct: 16 MPPTHFADLNDEARIEALKELGLP----KFRLNQIARHYYGRLEADPLTMTDLPEGARQE 71 Query: 64 LNQH-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + F + + + D T+K L + + +E+V + R TLC+SSQ Sbjct: 72 VKDALFPTLMSPLRVIETDDDTTQKTLWKLHDGTL-----LESVLMRYSDRSTLCISSQA 126 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RNL+ EI+ QV A + + G ++SNI Sbjct: 127 GCGMACPFCATGQGGLDRNLSIGEIVDQVRNAA--------------ATMQAEGGRLSNI 172 Query: 183 VMMGMGEPLCNFDNVKKSLSIAS--DSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239 V MGMGEPL N+ V ++ + G S+R +T+ST G P I ++ EE+ V L Sbjct: 173 VFMGMGEPLANYKRVVSAVRQITQPSPAGFGISQRSVTVSTVGLAPAIRKLADEEMSVTL 232 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH ++LR+ LVP+N ++P+ ++DA R+Y S R++ EY +++ +ND A Sbjct: 233 AVSLHTPDDELRDTLVPVNNRWPVAEVLDAARYYADKSGR-RVSIEYALIRDVNDQDWRA 291 Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L + L G +NLIP NP PG ++ + + F + G +R +G Sbjct: 292 DMLGEKLHKALGSRVHVNLIPLNPTPGSKWDAAPKARQDEFVRRVIAKGVPCTVRDTKGQ 351 Query: 357 DILAACGQLKSLS 369 +I AACGQL + Sbjct: 352 EIAAACGQLAAEE 364 >gi|269216514|ref|ZP_06160368.1| radical SAM enzyme, Cfr family [Slackia exigua ATCC 700122] gi|269130043|gb|EEZ61125.1| radical SAM enzyme, Cfr family [Slackia exigua ATCC 700122] Length = 345 Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats. Identities = 118/362 (32%), Positives = 189/362 (52%), Gaps = 28/362 (7%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 + E A+ ++ +P R QI +W+Y +G + M+++S+ +R L + Sbjct: 7 LSLAEAATAIKELDLPA----FRARQIAQWVYGKGAASYDEMTNLSRSLRERLAVELPLY 62 Query: 72 YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131 P IVD +IS DGTRK+++ F E V +P +R T+C S+QVGC++ CSFC Sbjct: 63 TPRIVDRQISQDGTRKYIVAFHD-----GASTEMVAMPYGNRLTVCFSTQVGCAMQCSFC 117 Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191 TG + RNL E++ Q++LA +G ++SN+V MG GEPL Sbjct: 118 ATGKEGFTRNLVPGEMVDQIILAEK-----------------DMGTRVSNVVSMGQGEPL 160 Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDL 250 N +N+ +L I +D R I +ST G V I + +LA+SLH+ + Sbjct: 161 LNLENLSAALEILNDPAYRGIGARHIVVSTCGIVQGIRAFADIGEQYVLAVSLHSAIQET 220 Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310 R++++P P++ LI+A + Y ++ R+TFEYV+++G+ND R LI I + Sbjct: 221 RDMIMPRVANQPIDALIEAIQEYDRKTHR-RVTFEYVLIQGMNDDRRHIDALIDICRRTH 279 Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 + +NLI N + S +K + F + +K +G + IR RG DI ACGQLK+ Sbjct: 280 SNVNLIELNEIEESPFRPSGRKVSLEFVKRLKSAGIEASIRDSRGSDIAGACGQLKNERA 339 Query: 371 RI 372 R+ Sbjct: 340 RL 341 >gi|240171730|ref|ZP_04750389.1| hypothetical protein MkanA1_20620 [Mycobacterium kansasii ATCC 12478] Length = 364 Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats. Identities = 120/371 (32%), Positives = 186/371 (50%), Gaps = 30/371 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + L + A+ ++G+P R Q+ + R I D + MSD+ VR + Sbjct: 14 MPPRHLADLDAAGRASAVAELGLPA----FRAKQLAHHYFGRLIADPRQMSDLPAAVRDV 69 Query: 64 LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + V E G TRK L R +E+V + R T+C+SSQ Sbjct: 70 IAAAMFPTLLTAVREVTCDAGQTRKTLWR-----AVDGATVESVLMRYPQRNTVCISSQA 124 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RNL+ EI+ QV A + + D G ++SN+ Sbjct: 125 GCGMACPFCATGQGGLTRNLSTAEIVEQVRAAAAAMRD-------------DFGDRLSNV 171 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239 V MGMGEPL N+ V ++ ++ G S R +T+ST G P I ++ +E +GV L Sbjct: 172 VFMGMGEPLANYSRVVAAVRRITEPPPCGFGISARSVTVSTVGLAPAIRKLADERLGVTL 231 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA ++LR+ LVP+N ++ ++ +DA R+Y ++ R++ EY +++G+ND A Sbjct: 232 ALSLHAPDDELRDTLVPVNNRWKVDEALDAARYYAEVTGR-RVSVEYALIRGVNDQRWRA 290 Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L + L G +NLIP NP PG ++ S + F + ++ G S +R RG Sbjct: 291 DLLGRRLHRALGPLVHVNLIPLNPTPGSDWDASPKPVERDFVKHVRAQGVSCTVRDTRGR 350 Query: 357 DILAACGQLKS 367 +I AACGQL + Sbjct: 351 EISAACGQLAA 361 >gi|325001872|ref|ZP_08122984.1| ribosomal RNA large subunit methyltransferase N [Pseudonocardia sp. P1] Length = 369 Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats. Identities = 119/371 (32%), Positives = 182/371 (49%), Gaps = 27/371 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + + ++G+P + R Q+ + + R D + MSD+ + R L Sbjct: 18 RHLADVDPADRAAVAAELGLP----KFRLDQLARHYFGRLTADVEEMSDLGADARQRLAA 73 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + + ++ TRK L R V E+V + R T+C+SSQ GC + Sbjct: 74 LLPPLVTPLTEKACDDGATRKTLWRGHD-----GVLAESVLMRYPDRATVCISSQAGCGM 128 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG L RNL+ EI+ QV A + D E ++SN+V MG Sbjct: 129 ACPFCATGQGGLQRNLSTGEIVDQVRRAAAAARDGALDEPA----------RLSNVVFMG 178 Query: 187 MGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MGEPL N+ V ++ + G S R +T+ST G VP I R+ EE + V LAISL Sbjct: 179 MGEPLANYKRVVAAVRRITSPAPDGFGISARGVTVSTVGLVPAIDRLREEGVPVTLAISL 238 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H ++LR+ LVP+N ++ + ++DA R Y + RR++ EY +++ +ND P A L Sbjct: 239 HCPDDELRDTLVPVNNRWKVSEVLDAGRRYAT-TTGRRVSIEYALIRDVNDQPWRADMLG 297 Query: 304 KILKGI----PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 K+L+ +NLIP NP PG E+ S + F ++ +G + +R RG +I Sbjct: 298 KVLRQHIGTSRVHVNLIPLNPTPGSEWDASPKPVEEEFVRRVRATGVACTVRDTRGQEID 357 Query: 360 AACGQLKSLSK 370 AACGQL + Sbjct: 358 AACGQLAASHP 368 >gi|317050952|ref|YP_004112068.1| radical SAM enzyme, Cfr family [Desulfurispirillum indicum S5] gi|316946036|gb|ADU65512.1| radical SAM enzyme, Cfr family [Desulfurispirillum indicum S5] Length = 342 Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats. Identities = 125/365 (34%), Positives = 191/365 (52%), Gaps = 27/365 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + ++++ +G P + R Q W+Y +G D +++S+E+R LL + Sbjct: 2 IDFCSLNYQQVQRLFADLGQP----KFRVDQFLAWVYAKGCLDMDAYTNVSKELRSLLRE 57 Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I + S D TRK LLRFP +ETV IP S+ + C+S+QVGC Sbjct: 58 TIHFPRYTIESVQHSRVDNTRKILLRFPD-----GHAVETVLIPVHSKLSQCLSTQVGCK 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC T + RNL+ EIL Q AR ++ ++ N V M Sbjct: 113 MGCTFCATASMGFKRNLSVSEILAQAFAAREII---------------EPHERVGNFVFM 157 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLH 244 GMGEPL N++N ++ + +S R +TLST G + I R+ EE+ LAISLH Sbjct: 158 GMGEPLDNYENSIAAIKTIIHPQMMGYSHRHVTLSTCGILKGIRRLSREELPCNLAISLH 217 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 AV+++ R+ L+P+NR L L+ R +P LS+ + IT EY++++ NDS DA L++ Sbjct: 218 AVNDEQRSFLMPVNRADGLHALMQTLREFP-LSSKKVITIEYLLIRDFNDSTDDAKKLLQ 276 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L+G+ K+NLI +NP +Y D+K ++ F + G + IR G DI AACGQ Sbjct: 277 LLRGLRCKVNLIVYNPHDYADYHAPDEKRVLQFQRILAEKGVMTFIRKSGGSDIDAACGQ 336 Query: 365 LKSLS 369 L S Sbjct: 337 LAGKS 341 >gi|239621375|ref|ZP_04664406.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515836|gb|EEQ55703.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 389 Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats. Identities = 121/368 (32%), Positives = 189/368 (51%), Gaps = 26/368 (7%) Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69 + M E+ E ++G+P + R Q+ + + +D R F Sbjct: 41 VDMTPEQRVEKAAELGLP----KFRVKQLANHYFGHFDVNAAEFTDFPAAKRSEAAAAFF 96 Query: 70 IIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 V +++ +GT K L + + IE+V + +R TLC+SSQVGC + C Sbjct: 97 PRLITEVTRQVADEGTTIKTLWKLFDGSL-----IESVLMRYPTRTTLCISSQVGCGMDC 151 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG L RN++ EI+ QV +A ++ D + ++SNIV MGMG Sbjct: 152 PFCATGKLGLTRNMSTGEIIEQVRVAAKMMRD---------GEVAGGEGRLSNIVFMGMG 202 Query: 189 EPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHA 245 EP+ N+++V ++ S G S R IT+ST G VP I ++ E I V LA+SLHA Sbjct: 203 EPMGNYNSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRLAVSLHA 262 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 S++LR+ LVP+N+++ + ++DA Y L++ RR++ EY +++GIND A L K Sbjct: 263 PSDELRDELVPMNKRFNTKQVLDAAHDYW-LASKRRVSIEYALMRGINDQAEHAQLLAKR 321 Query: 306 LKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 L A +N IP NP G ++ S +D F E + R+G ++ +R RG DI AC Sbjct: 322 LNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEQRFLEILHRAGITATLRDTRGQDIDGAC 381 Query: 363 GQLKSLSK 370 GQL + + Sbjct: 382 GQLAAKER 389 >gi|26554015|ref|NP_757949.1| hypothetical protein MYPE5630 [Mycoplasma penetrans HF-2] gi|81747712|sp|Q8EVK0|RLMN_MYCPE RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|26454023|dbj|BAC44353.1| conserved hypothetical protein [Mycoplasma penetrans HF-2] Length = 352 Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats. Identities = 120/361 (33%), Positives = 191/361 (52%), Gaps = 27/361 (7%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 S+ +EL++ L K I QI+ WIY + + F M +IS+E L Q Sbjct: 5 SIYSFTLQELKKELTKNNIKA----FVAEQIFDWIYSKHVDSFDEMKNISKENIEKLKQL 60 Query: 68 FSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 FS + ++ DGT K+LL+ IETV + ++CV+SQ+GC++ Sbjct: 61 FSFENMVVDKLQVDKHDGTVKFLLKLEDGNF-----IETVIMKFNYGYSVCVTSQIGCNM 115 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC +G + RN+T E + Q ++A+ V + K++++V+MG Sbjct: 116 ACKFCASGLIRKKRNITVGEFIKQFIIAKEY-------------VEKNFNDKLTHMVVMG 162 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245 +GEP NF+N+ + + GL S R+IT+ST G V I + + V LAI LHA Sbjct: 163 IGEPFDNFENLIQFFEVIKQQKGLCISPRKITVSTCGLVEKIKEFADLKNQVNLAILLHA 222 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +N++RN ++PIN+ Y L+ +I+A +Y ++ R+T EY+++K +NDS +A+ L K+ Sbjct: 223 PNNEIRNKIMPINKVYSLDKVIEAMDYYIKVTKR-RVTIEYILIKDVNDSDENAVELAKL 281 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LKG +NLIP+N Y S F + +K++ + IR RG I AACGQL Sbjct: 282 LKGKLCYVNLIPYNKVVENNYFRS--VRGKQFFDVLKKNNIQATIRLERGSSIDAACGQL 339 Query: 366 K 366 + Sbjct: 340 R 340 >gi|298372852|ref|ZP_06982842.1| radical SAM enzyme, Cfr family [Bacteroidetes oral taxon 274 str. F0058] gi|298275756|gb|EFI17307.1| radical SAM enzyme, Cfr family [Bacteroidetes oral taxon 274 str. F0058] Length = 342 Score = 366 bits (940), Expect = 4e-99, Method: Composition-based stats. Identities = 124/365 (33%), Positives = 187/365 (51%), Gaps = 30/365 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K+S+ + L+E + +P R Q+ +WIY + F+ M++IS++ L Sbjct: 1 MSKQSITDLNLTRLQEEFASLSLP----RYTARQVTEWIYKKRSARFEDMTNISKKNLSL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +HF S DGT+K+L +IETV IP+ R TLCVS QVG Sbjct: 57 LAEHFDTGRQPYSMATTSADGTKKYLFSTRHG------DIETVMIPDDDRRTLCVSCQVG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C ++C FC TG NL+A EI+ QVL + I+NIV Sbjct: 111 CRMSCRFCMTGRCGFAGNLSAGEIINQVLSV-------------------DEAKNITNIV 151 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MGMGEP N V +++ I + GL++S +RIT+STSG I + LAISL Sbjct: 152 FMGMGEPFDNLGEVLRAIEILTSEWGLAYSPKRITVSTSGLRKGIETFLDNTQCHLAISL 211 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H D R ++P+ +E ++ Y ++ RR++FEY++ +GINDS R A ++ Sbjct: 212 HNPFADERAKMMPVEHSDHIEEVVTLLHRY-DFAHQRRLSFEYIVFEGINDSVRHAEGIV 270 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++L+G+ ++NLI F+ + D+ + F + + R G S IR RG DI AACG Sbjct: 271 RLLRGLFCRVNLIRFHEVADLDLRSPDKNKMEHFRDYLNRHGIISTIRRSRGEDIEAACG 330 Query: 364 QLKSL 368 QLK+ Sbjct: 331 QLKNQ 335 >gi|134102464|ref|YP_001108125.1| ribosomal RNA large subunit methyltransferase N [Saccharopolyspora erythraea NRRL 2338] gi|291004145|ref|ZP_06562118.1| ribosomal RNA large subunit methyltransferase N [Saccharopolyspora erythraea NRRL 2338] gi|205829872|sp|A4FMC5|RLMN_SACEN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|133915087|emb|CAM05200.1| predicted Fe-S-cluster redox enzyme [Saccharopolyspora erythraea NRRL 2338] Length = 369 Score = 366 bits (939), Expect = 4e-99, Method: Composition-based stats. Identities = 120/373 (32%), Positives = 184/373 (49%), Gaps = 26/373 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + L + +E A+ ++G R Q+ + R D + M+DI R Sbjct: 16 MPPRHLADLSADERRAAVTELG----EKPFRARQLAHHYFGRLNADVESMTDIPAGSRAK 71 Query: 64 LNQHFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L V + +GT RK L R + +E+V + R T+C+SSQ Sbjct: 72 LGADLLPTLLTPVRNLDTDEGTTRKTLWRAHDGTL-----LESVLMRYPDRATVCISSQA 126 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RNL+ EI+ QV A +++ D +P ++SN+ Sbjct: 127 GCGMACPFCATGQGGLQRNLSTAEIVDQVRSAAAMMRD---------GEVPGGPGRLSNV 177 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239 V MGMGEPL N+ V ++ D GL S+R +T+ST G VP I R+ E++ V L Sbjct: 178 VFMGMGEPLANYKRVINAVHRICDPAPEGLGLSQRSVTVSTVGLVPAIRRMTAEDLHVTL 237 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH ++LR+ LVP+N ++ +E ++ A R Y + R++ EY +++ IND P A Sbjct: 238 AVSLHTPDDELRDTLVPVNNRWKVEEVLQAARGYADHTGR-RVSIEYALIRDINDQPWRA 296 Query: 300 LNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L K+L +NLIP NP PG ++ S + F ++ +G +R RG Sbjct: 297 DLLGKLLHKHLGQFVHVNLIPLNPTPGSKWDASPKPVEREFVRRVREAGVPCTVRDTRGQ 356 Query: 357 DILAACGQLKSLS 369 +I AACGQL + Sbjct: 357 EIAAACGQLAAEE 369 >gi|258652388|ref|YP_003201544.1| ribosomal RNA large subunit methyltransferase N [Nakamurella multipartita DSM 44233] gi|258555613|gb|ACV78555.1| radical SAM enzyme, Cfr family [Nakamurella multipartita DSM 44233] Length = 372 Score = 366 bits (939), Expect = 4e-99, Method: Composition-based stats. Identities = 127/375 (33%), Positives = 188/375 (50%), Gaps = 33/375 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + + +E A+ G P+ R Q+ + RD M+D+ R + Sbjct: 19 THFVDLSPDERRAAVRAAGAPE----FRAKQLAHHYFAGLTRDAAEMTDLPAAGR---AE 71 Query: 67 HFSIIYPEIVDEKIS---CDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + PE++ E S DG TRK L R + IE+V + R TLCVSSQ Sbjct: 72 FVDALLPELLTEVRSLACDDGSTRKTLWRAHDGTL-----IESVLMRYPDRITLCVSSQA 126 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RNL+ EI+ QV LA + D E ++SN+ Sbjct: 127 GCGMACPFCATGQGGLQRNLSTGEIVEQVRLAARMARDGALGEPG----------RLSNV 176 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239 V MGMGEPL N++ V +++ + GL S R +T+ST G VP I R+ EE + V L Sbjct: 177 VFMGMGEPLANYNRVLEAVRAITAPAPSGLGISARSVTVSTVGLVPAIRRLTEEKLQVRL 236 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH ++LR+ LVP+N ++ + ++ A R Y + RR++ EY +++ IND P A Sbjct: 237 AVSLHTPDDELRDTLVPVNERWKVAEVLAAAREYAD-TTGRRVSIEYALIRDINDQPWRA 295 Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L +L+ G +NLIP NP PG ++ S + F ++ G + +R RG Sbjct: 296 DLLGSLLREHLGPLVHVNLIPLNPTPGSQWDASPRPVQDEFVRRVRAQGVACTVRDTRGQ 355 Query: 357 DILAACGQLKSLSKR 371 +I AACGQL + R Sbjct: 356 EIAAACGQLAAEGVR 370 >gi|311739708|ref|ZP_07713543.1| cfr family radical SAM enzyme [Corynebacterium pseudogenitalium ATCC 33035] gi|311305524|gb|EFQ81592.1| cfr family radical SAM enzyme [Corynebacterium pseudogenitalium ATCC 33035] Length = 374 Score = 366 bits (939), Expect = 4e-99, Method: Composition-based stats. Identities = 115/374 (30%), Positives = 184/374 (49%), Gaps = 31/374 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 L + + E + L +IG+P + R Q+ K Y + + M+DI R Sbjct: 20 LPPKHFADLTETERIDKLAEIGLP----KFRAKQLAKHYYEHYTDNVEDMTDIPAGKREA 75 Query: 64 LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + + F + + + DG T K L R + +E+V + R TLC+SSQ Sbjct: 76 VKEAFFPELMQPIRTTSTDDGETTKSLWRLHDGTL-----LESVLMRYPGRATLCISSQA 130 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RNL+ EI+ Q + + G ++SN+ Sbjct: 131 GCGMACPFCATGQGGLDRNLSTGEIVEQFRH--------------AAAAMAAEGGRLSNV 176 Query: 183 VMMGMGEPLCNFDNVKKSLSIAS--DSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239 V MGMGEPL N+ V +++ + D G S+R +T+ST G P I ++ +E + L Sbjct: 177 VFMGMGEPLANYKRVVQAVRQITGQDGAGFGLSQRNVTVSTVGLAPAIRKLADEDLACTL 236 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH ++LR+ LVP+N ++ ++ ++DA R+Y S ARR++ EY +++ ND A Sbjct: 237 AVSLHTPDDELRDGLVPVNNRWSVDEVLDAARYYADKS-ARRVSIEYALIRDKNDQDFRA 295 Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L + L G +N+IP NP PG E+ + Q F ++ G +R +G Sbjct: 296 DMLGRKLHQKLGSKVHVNVIPLNPTPGSEWDAAPQDRQDEFVRRVQAQGVPCTVRDTKGD 355 Query: 357 DILAACGQLKSLSK 370 +I AACGQL + + Sbjct: 356 EIAAACGQLAADER 369 >gi|291456892|ref|ZP_06596282.1| radical SAM enzyme, Cfr family [Bifidobacterium breve DSM 20213] gi|291382169|gb|EFE89687.1| radical SAM enzyme, Cfr family [Bifidobacterium breve DSM 20213] Length = 389 Score = 366 bits (939), Expect = 4e-99, Method: Composition-based stats. Identities = 122/374 (32%), Positives = 189/374 (50%), Gaps = 28/374 (7%) Query: 6 KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 K L + M + E ++G+P + R Q+ + + +D R Sbjct: 35 KPPLHFVDMTPAQRIEKAAELGLP----KFRVKQLANHYFGHFDVNAAEFTDFPAAKRDE 90 Query: 64 LNQHFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 F V +++ +GT K L + + IE+V + +R TLC+SSQV Sbjct: 91 AAAAFFPQLITEVTRQVADEGTTIKTLWKLFDGSL-----IESVLMRYPTRTTLCISSQV 145 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RN++ EI+ QV +A ++ D + ++SNI Sbjct: 146 GCGMGCPFCATGKLGLTRNMSTGEIVEQVRVAAKMMRD---------GEVAGGEGRLSNI 196 Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239 V MGMGEP+ N+++V ++ S G S R IT+ST G VP I ++ E I V L Sbjct: 197 VFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRL 256 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA S++LR+ LVP+N+++ ++DA Y L++ RR++ EY +++GIND A Sbjct: 257 AVSLHAPSDELRDELVPMNKRFNTTQVLDAAHDYW-LASKRRVSIEYALMRGINDQAEHA 315 Query: 300 LNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L K L A +N IP NP G ++ S +D F E + R+G ++ +R RG Sbjct: 316 QLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDEKQFLEILHRAGITATLRDTRGQ 375 Query: 357 DILAACGQLKSLSK 370 DI ACGQL + + Sbjct: 376 DIDGACGQLAAKER 389 >gi|332670033|ref|YP_004453041.1| radical SAM enzyme, Cfr family [Cellulomonas fimi ATCC 484] gi|332339071|gb|AEE45654.1| radical SAM enzyme, Cfr family [Cellulomonas fimi ATCC 484] Length = 374 Score = 366 bits (939), Expect = 5e-99, Method: Composition-based stats. Identities = 110/370 (29%), Positives = 174/370 (47%), Gaps = 26/370 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + + + E+ A+ ++G R Q+ + D M+D+ + R L + Sbjct: 23 KHFVDLTPEQRVAAVTELG----EKPFRAKQLATHYFTHLTSDPAAMTDLPKATRDKLVE 78 Query: 67 HFSIIYPEIVDEKISCDGTR-KWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + GT K L ++E+V + +R TLC+SSQ GC Sbjct: 79 GLFPTLLTAHRTLTADQGTTVKTLWHLFD-----GAKVESVLMRYANRTTLCISSQAGCG 133 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC TG L RNL+ EI+ QV A L D +P +++N+V M Sbjct: 134 LACAFCATGQLGLTRNLSTAEIVEQVRAAARSLAD---------GEVPGGPTRLTNVVFM 184 Query: 186 GMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 GMGEPL N+ V +++ GL S R +T+ST G VP + ++ E I V LA+S Sbjct: 185 GMGEPLANYKAVMETVRRLVAPTPDGLGMSARNVTVSTVGMVPAMDKLANEGIPVTLALS 244 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA ++LR+ LVP+N ++ ++ ID+ Y + R++ EY +++ +ND A L Sbjct: 245 LHAPDDELRSELVPVNTRWSVDEAIDSAHRYFEKTGR-RVSIEYALIRDVNDHAWRADLL 303 Query: 303 IKIL--KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 + L +G N IP NP P + SD + F ++ G + +R RG +I Sbjct: 304 GEKLAARGTGWVHCNPIPLNPVPNSRWTASDPQVEREFVARLRAHGIPTTVRDTRGSEID 363 Query: 360 AACGQLKSLS 369 ACGQL + Sbjct: 364 GACGQLAAEE 373 >gi|114776700|ref|ZP_01451743.1| radical SAM superfamily protein [Mariprofundus ferrooxydans PV-1] gi|114552786|gb|EAU55217.1| radical SAM superfamily protein [Mariprofundus ferrooxydans PV-1] Length = 357 Score = 365 bits (938), Expect = 5e-99, Method: Composition-based stats. Identities = 133/371 (35%), Positives = 204/371 (54%), Gaps = 27/371 (7%) Query: 9 LIGMMREELEEALLKIGIPQRHV-RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 L GM ++L G+ H R+R + I++ D D+ +R L +H Sbjct: 7 LNGMNHDQLLALCGAAGVSPAHADRLRAA-IFRHY--GSDTDINNTPDLPLRLRSYLAEH 63 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 +++ P DGTRK LL + E+ETV IP R T C+S+QVGC++ Sbjct: 64 TALLQPASTATSEGEDGTRKLLL-----AMADGREVETVLIPGNGRLTQCISTQVGCAVG 118 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C+FC T T L RNLTA E++ +V + + G R++ N+V+MGM Sbjct: 119 CTFCLTATAGLTRNLTAAEMVAEVTAGQRISG-----------------RQVRNLVLMGM 161 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAV 246 GEPL N+D V + +A+D G++FS R+TLSTSG VP + R+ +E+ LA+SL+A Sbjct: 162 GEPLHNYDEVAHFVRLATDPKGMAFSPNRVTLSTSGLVPAMQRMIRDELPCNLAVSLNAT 221 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ +R+ ++PINRKYP+ ML+D R Y + +R+ EYV+L GINDS DA+ L +++ Sbjct: 222 NDAVRDTIMPINRKYPIAMLLDTVREYIRVRGNKRVLIEYVLLDGINDSQADAIRLCELM 281 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 G+ +NL+PFN +PG + + F + +G + +R +G DI AACGQLK Sbjct: 282 AGMGCTVNLLPFNAYPGLPFQRPADAAVSAFRAILVEAGIITVVRESKGRDIAAACGQLK 341 Query: 367 SLSKRIPKVPR 377 + + K R Sbjct: 342 TEVVQRRKASR 352 >gi|254776158|ref|ZP_05217674.1| hypothetical protein MaviaA2_16010 [Mycobacterium avium subsp. avium ATCC 25291] Length = 364 Score = 365 bits (938), Expect = 5e-99, Method: Composition-based stats. Identities = 120/367 (32%), Positives = 182/367 (49%), Gaps = 30/367 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + + A+ ++G+P R Q+ Y R I D + M+D+ +R + Sbjct: 17 RHLADLDADGRASAVAELGLPA----FRAKQLAHQYYGRLIADPRQMTDLPAGLRDAIAD 72 Query: 67 H-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F I+ + TRK L R V +E+V + R T+C+SSQ GC Sbjct: 73 TMFPILLTAASEVTCDAGQTRKTLWRALD-----GVTVESVLMRYPQRNTVCISSQAGCG 127 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG L RNL+ EIL QV + L D G ++SN+V M Sbjct: 128 MACPFCATGQGGLSRNLSTAEILEQVRAGAAALRD-------------DFGDRLSNVVFM 174 Query: 186 GMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 GMGEPL N+ V ++ G S R +T+ST G P I ++ +E +GV LA+S Sbjct: 175 GMGEPLANYARVVAAVRRIVAAPPQGFGISARSVTVSTVGLAPAIRKLADERLGVTLALS 234 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA ++LR+ LVP+N ++ + +DA R+Y ++ R++ EY +++ +ND P A L Sbjct: 235 LHAPDDELRDTLVPVNNRWKIAEALDAARYYADVTGR-RVSVEYALIRDVNDQPWRADLL 293 Query: 303 IKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 + L G +NLIP NP PG ++ S + F ++ +G S +R RG +I Sbjct: 294 GQRLHRALGPLVHVNLIPLNPTPGSQWDASPKPVEREFVRRVRAAGVSCTVRDTRGREIS 353 Query: 360 AACGQLK 366 AACGQL Sbjct: 354 AACGQLA 360 >gi|255325234|ref|ZP_05366340.1| radical SAM enzyme, Cfr family [Corynebacterium tuberculostearicum SK141] gi|255297799|gb|EET77110.1| radical SAM enzyme, Cfr family [Corynebacterium tuberculostearicum SK141] Length = 366 Score = 365 bits (938), Expect = 6e-99, Method: Composition-based stats. Identities = 115/374 (30%), Positives = 184/374 (49%), Gaps = 31/374 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 L + + E + L +IG+P + R Q+ K Y + + M+DI R Sbjct: 12 LPPKHFADLTETERIDKLAEIGLP----KFRAKQLAKHYYEHYTDNVEDMTDIPAGKREA 67 Query: 64 LNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + + F + + + DG T K L R + +E+V + R TLC+SSQ Sbjct: 68 VKEAFFPELMQPIRTTSTDDGETTKSLWRLHDGTL-----LESVLMRYPGRATLCISSQA 122 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RNL+ EI+ Q + + G ++SN+ Sbjct: 123 GCGMACPFCATGQGGLDRNLSTGEIVEQFRH--------------AAAAMAAEGGRLSNV 168 Query: 183 VMMGMGEPLCNFDNVKKSLSIAS--DSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239 V MGMGEPL N+ V +++ + D G S+R +T+ST G P I ++ +E + L Sbjct: 169 VFMGMGEPLANYKRVVQAVRQITGQDGAGFGLSQRNVTVSTVGLAPAIRKLADEDLACTL 228 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH ++LR+ LVP+N ++ ++ ++DA R+Y S ARR++ EY +++ ND A Sbjct: 229 AVSLHTPDDELRDGLVPVNNRWSVDEVLDAARYYADKS-ARRVSIEYALIRDKNDQDFRA 287 Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L + L G +N+IP NP PG E+ + Q F ++ G +R +G Sbjct: 288 DMLGRKLHQKLGSKVHVNVIPLNPTPGSEWDAAPQDRQDEFVRRVQAQGVPCTVRDTKGD 347 Query: 357 DILAACGQLKSLSK 370 +I AACGQL + + Sbjct: 348 EIAAACGQLAADER 361 >gi|255016116|ref|ZP_05288242.1| hypothetical protein B2_19608 [Bacteroides sp. 2_1_7] gi|256842536|ref|ZP_05548038.1| ribosomal RNA large subunit methyltransferase N [Parabacteroides sp. D13] gi|256735892|gb|EEU49224.1| ribosomal RNA large subunit methyltransferase N [Parabacteroides sp. D13] Length = 334 Score = 365 bits (937), Expect = 6e-99, Method: Composition-based stats. Identities = 128/358 (35%), Positives = 177/358 (49%), Gaps = 29/358 (8%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 M EEL+ ++G+P Q+ WIY + I M++I+ R LL F I Sbjct: 1 MTLEELKGVASEVGLPA----YAAKQMADWIYKKKITRISEMTNIAVAKRALLEDSFEIG 56 Query: 72 YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131 + + S DGT K+L G +E+VYIP R TLCVSSQVGC + C FC Sbjct: 57 AYPPSEYQKSKDGTIKYLY-----AAGPGRFVESVYIPTDDRATLCVSSQVGCKMNCLFC 111 Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191 TG Q NLTA +IL Q+ ++NIV MGMGEPL Sbjct: 112 MTGKQGFTANLTANQILNQI-------------------QSLPENDSLTNIVFMGMGEPL 152 Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLR 251 N D + K L I + G ++S +RIT+ST G + R EE LA+SLH+ R Sbjct: 153 DNVDELFKVLEILTAPYGYAWSPKRITVSTIGVTKGLKRFLEESECHLAVSLHSPYPMER 212 Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311 L+P+ + +P +ID + Y S+ RR++FEY++ K +NDS + A L +L GIP Sbjct: 213 LSLMPVEKAFPAREVIDLIKQY-DFSHQRRVSFEYIVFKNLNDSLKHAEALSCLLGGIPC 271 Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369 ++NLI F+ P SD + F + + G IR RG DI AACG L + Sbjct: 272 RVNLIRFHAIPNVSLETSDIAKMEAFRDFLNAKGVVCTIRASRGEDIFAACGMLSTAK 329 >gi|212695668|ref|ZP_03303796.1| hypothetical protein ANHYDRO_00185 [Anaerococcus hydrogenalis DSM 7454] gi|212677341|gb|EEB36948.1| hypothetical protein ANHYDRO_00185 [Anaerococcus hydrogenalis DSM 7454] Length = 343 Score = 365 bits (937), Expect = 6e-99, Method: Composition-based stats. Identities = 123/371 (33%), Positives = 197/371 (53%), Gaps = 30/371 (8%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 + K+++ EELE+ L +G + R Q+++ I+V I DF M+D+S+++R Sbjct: 1 MIMKQTINDKTIEELEKIFLDLGF----KKFRAKQVFRQIHVNKINDFSKMTDLSKKMRE 56 Query: 63 LLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L+++F ++V E S D T+K+L + I IE V++ +R T+C+SSQ Sbjct: 57 DLDKYFYFPKIKVVKEFKSNLDKTKKYLFELDDKNI-----IEAVFMEYNNRNTICISSQ 111 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC + C FC + L R+L+A EI+ ++ L D ISN Sbjct: 112 VGCRMGCKFCASTKNGLERSLSASEIIEEIYLLERENSD------------------ISN 153 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLA 240 IV+MG+GEPL NF N++K + I +D G + S R IT+ST G V I + + LA Sbjct: 154 IVVMGIGEPLDNFSNIEKFIKIITDQKGRNLSHRSITVSTVGLVDKIYDLANLGYDINLA 213 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLH ++ R +P KY ++ +I AC +Y + R+++EYV++ G+N+ D Sbjct: 214 VSLHYAFDEKRMAYMPSGNKYKIKDIIKACDYYLEKTKR-RVSYEYVVIDGVNNLREDID 272 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L K+ KG INLIP NP +Y + + F + + + G ++ IR G DI A Sbjct: 273 QLEKLFKGKNIHINLIPLNPIEEFKYSKTKNNVMDQFQQKLTKKGLNATIRRSMGSDIDA 332 Query: 361 ACGQLKSLSKR 371 +CGQL++ R Sbjct: 333 SCGQLRNNYAR 343 >gi|226356358|ref|YP_002786098.1| ribosomal RNA large subunit methyltransferase N [Deinococcus deserti VCD115] gi|259491983|sp|C1CVX7|RLMN_DEIDV RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|226318348|gb|ACO46344.1| conserved hypothetical protein [Deinococcus deserti VCD115] Length = 343 Score = 365 bits (937), Expect = 7e-99, Method: Composition-based stats. Identities = 117/336 (34%), Positives = 173/336 (51%), Gaps = 22/336 (6%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 R Q+ +W++V+G+ F M+++ E R L + + + ++ S DG+ K+L Sbjct: 17 FRRRQLLEWVFVQGVGTFDAMTNLPAEARAELARSYHLNPFREIETVRSADGSVKYLFTL 76 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 ++E VY+P R T+CVS+ VGC C+FC TG RNLT EI+ QVL Sbjct: 77 TD-----GRQMEAVYMPYLDRKTICVSTMVGCPARCAFCATGAMGFGRNLTPGEIVAQVL 131 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 G P R+I N+V MGMGE + N++N ++ I L Sbjct: 132 AVAGGEGIGP--------------REIRNLVFMGMGEAMLNYENTMQAARILLHPQALGM 177 Query: 213 SKRRITLSTSGFVPNIARVG--EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 SKRR+TLST G I ++ +++G+ LAISLHA D R ++P + ++ A Sbjct: 178 SKRRVTLSTVGIAKGIRQLAAEDDLGIKLAISLHAPDEDTRQRIIPTGAANSIAEIMAAA 237 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD 330 R Y ++ RIT EY ML+GIND A L +L+G+ + +NLIP NPW G + S Sbjct: 238 RDYQAVTGR-RITLEYTMLRGINDHLWQAELLADVLQGLVSHVNLIPMNPWDGSGFESST 296 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + I F + ++ G +R RG D AACGQL Sbjct: 297 EDQIQAFYDTLEARGVDVSVRRSRGKDAGAACGQLA 332 >gi|291279341|ref|YP_003496176.1| hypothetical protein DEFDS_0948 [Deferribacter desulfuricans SSM1] gi|290754043|dbj|BAI80420.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 360 Score = 365 bits (937), Expect = 7e-99, Method: Composition-based stats. Identities = 129/369 (34%), Positives = 208/369 (56%), Gaps = 29/369 (7%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN K + EL+E + ++ R +Q++KWIY +G+ F M+D+ E Sbjct: 1 MNH--KID--NLSLTELKEVVTQL----NEKPFRATQLFKWIYQKGVTSFDEMTDLPLEF 52 Query: 61 RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119 R L ++FS +V++ S DG+ K L R IE+V + + R T C+S Sbjct: 53 RKKLIENFSFTKLTVVEQLESQLDGSIKVLFRLEDDNF-----IESVLMFDGKRVTACLS 107 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 +QVGC + C FC T L+RNLT+ EI+ Q++ R+L + + + Sbjct: 108 TQVGCRMGCQFCNTAKIGLIRNLTSAEIIRQIIYLRNL--------------AETKKKPL 153 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 +N+V MGMGEPL NFDN+ KSL I + L+FS R++T+ST G + + + + V + Sbjct: 154 TNLVFMGMGEPLDNFDNLTKSLDIILNEEALNFSHRKVTVSTCGIMDKLNLLAKHYKVNI 213 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 AISL+AV+N +R+ L+P+N++YP+E +I+ + P + +RIT EYV++ G+N++ +DA Sbjct: 214 AISLNAVTNKIRSKLMPVNKRYPIEEIINGIKKLP-IPKRKRITLEYVLIDGLNNTTKDA 272 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L+K LKG+P K+NLI +N ++ + F + + +G ++ IR G DI Sbjct: 273 NLLVKQLKGLPIKVNLILYNKTKLSDFHSPQLNYALNFQKTLINNGIATFIRKSFGQDIE 332 Query: 360 AACGQLKSL 368 AACGQL + Sbjct: 333 AACGQLYAK 341 >gi|296454242|ref|YP_003661385.1| Cfr family radical SAM enzyme [Bifidobacterium longum subsp. longum JDM301] gi|296183673|gb|ADH00555.1| radical SAM enzyme, Cfr family [Bifidobacterium longum subsp. longum JDM301] Length = 389 Score = 365 bits (937), Expect = 8e-99, Method: Composition-based stats. Identities = 123/374 (32%), Positives = 188/374 (50%), Gaps = 28/374 (7%) Query: 6 KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 K L M E+ E ++G+P + R Q+ + + +D R Sbjct: 35 KPPLHFADMTPEQRIEKAAELGLP----KFRVKQLANHYFGHFDVNAAEFTDFPAAKRSE 90 Query: 64 LNQHFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 F V +++ +GT K L + + IE+V + +R TLC+SSQV Sbjct: 91 AAAAFFPQLITEVTRQVADEGTTIKTLWKLFDGSL-----IESVLMRYPTRTTLCISSQV 145 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RN++ EI+ QV +A ++ D + ++SNI Sbjct: 146 GCGMGCPFCATGKLGLTRNMSTGEIIEQVRVAAKMMRD---------GEVAGGEGRLSNI 196 Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239 V MGMGEP+ N+++V ++ S G S R IT+ST G VP I ++ E I V L Sbjct: 197 VFMGMGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRL 256 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA S++LR+ LVP+N+++ ++DA Y L++ RR++ EY +++GIND A Sbjct: 257 AVSLHAPSDELRDELVPMNKRFNTTQVLDAAHDYW-LASKRRVSIEYALMRGINDQAEHA 315 Query: 300 LNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L K L A +N IP NP G ++ S D F E + R+G ++ +R RG Sbjct: 316 QLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPGDEQRFLEILHRAGITATLRDTRGQ 375 Query: 357 DILAACGQLKSLSK 370 DI ACGQL + + Sbjct: 376 DIDGACGQLAAKER 389 >gi|301166181|emb|CBW25756.1| conserved hypothetical protein [Bacteriovorax marinus SJ] Length = 352 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 133/365 (36%), Positives = 199/365 (54%), Gaps = 23/365 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S + +EL +L + G+ + ++ W Y + +IS+ + L+ Sbjct: 10 KRSFYNLNYDELVTSLQEEGLGTSAASL----LYNWHYKKKQSSP-CTHNISKATQKFLS 64 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +F PEI + IS D T K+L + ++E+V IP ++ ++C+SSQVGC+ Sbjct: 65 DNFDFSLPEIDEVHISDDRTVKFLFKLHDSS-----KVESVLIPFHNKYSICLSSQVGCA 119 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + CSFC+TGTQ L RNL EIL Q L A L + E +I NIV M Sbjct: 120 MKCSFCFTGTQGLKRNLETSEILGQFLAAWRWLAENRPGE-----------ERILNIVFM 168 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLH 244 G GEPL NFD VK++ I G S ++IT+STSG++P + R EEI V LA+SLH Sbjct: 169 GQGEPLHNFDAVKRACEIFLSKNGASIGTQKITISTSGYLPGLKRWEEEIPGVNLALSLH 228 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 + + RN L+P+N+KY L ++ L + IT+EY+++K NDS DA + + Sbjct: 229 SPFEEKRNELIPVNKKYSLPEVLKHIDS-ITLQKKQFITYEYLLIKDFNDSVEDARAVGE 287 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +LKG A IN+IPFNP+PG +Y ++++F I + +R +G D+LAACGQ Sbjct: 288 LLKGKEAYINIIPFNPFPGSKYKRPSDNEVLSFKSIIDEYKIPTLVRITKGDDVLAACGQ 347 Query: 365 LKSLS 369 L + S Sbjct: 348 LNTKS 352 >gi|302800564|ref|XP_002982039.1| hypothetical protein SELMODRAFT_179299 [Selaginella moellendorffii] gi|300150055|gb|EFJ16707.1| hypothetical protein SELMODRAFT_179299 [Selaginella moellendorffii] Length = 425 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 120/372 (32%), Positives = 194/372 (52%), Gaps = 36/372 (9%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-NQH 67 L+G +EL++ ++G R R Q++ +Y + Q +++S+ R L ++ Sbjct: 73 LLGKSEKELQDLCEEMG----EKRFRGKQMYLLLYKVRKAEIQEFTNLSKGFREKLISEG 128 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP---EKSRGTLCVSSQVGC 124 + + I + S DGT K LL+ + IETV IP E +R T+CVSSQVGC Sbjct: 129 WEVGRSPIHHKVNSVDGTIKVLLKLKDSRL-----IETVGIPADEENNRLTVCVSSQVGC 183 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 L C+FC TG R+L EI+ QVL+ + ++SN+V Sbjct: 184 PLRCAFCATGKGGFTRSLKPHEIIEQVLVMEEIFKQ-----------------RVSNVVF 226 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISL 243 MGMGEP+ N +V + ++ + +R IT+ST G +I ++ ++ LA+SL Sbjct: 227 MGMGEPMLNMASVLAAHRCLNED--IGIGQRMITISTVGVPNSIRKLAAHKLQSTLAVSL 284 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA + LR +VP + YPL+ L++ C+ Y ++ R++FEY +L G+NDS A L Sbjct: 285 HAPNQRLREQIVPSAKSYPLDALMEDCKEYFSITGR-RVSFEYTLLAGVNDSKELAFELG 343 Query: 304 KILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 ++L + +NLIP+NP + QK + TF E + + ++ +R RGLD AA Sbjct: 344 ELLHHWDMSHHVNLIPYNPVADSLFQRPWQKSVQTFVETLAKCRVNASVRQTRGLDANAA 403 Query: 362 CGQLKSLSKRIP 373 CGQL++ ++ P Sbjct: 404 CGQLRNQFQKTP 415 >gi|258645365|ref|ZP_05732834.1| radical SAM enzyme, Cfr family [Dialister invisus DSM 15470] gi|260402714|gb|EEW96261.1| radical SAM enzyme, Cfr family [Dialister invisus DSM 15470] Length = 345 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 121/364 (33%), Positives = 192/364 (52%), Gaps = 27/364 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K ++ G+ +ELE ++ G P R R Q+ ++Y R I F M+ SQ++R L Sbjct: 2 KRNIWGLNLQELETWVVGNGFP----RFRAKQLRDYLYKRHIFHFDEMTQFSQKMRDWLK 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++ I P I+ S D K + + +ETV + ++CVS+QVGC+ Sbjct: 58 ENGQIDKPVIISRAQSDD--EKTI--KLLLKLKDGSLVETVCMCHHYGNSICVSTQVGCA 113 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC + + L RNLTA EIL Q+ + L +IV+M Sbjct: 114 MGCIFCASTRKGLERNLTAGEILAQMYAFKELY-----------------DIPFHSIVLM 156 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G GEPL N+ V + +A+D L+ S R IT+ST G VP I R+ +E I + LAISLH Sbjct: 157 GAGEPLTNYKEVLHFIHLANDPELLNISYRNITISTCGIVPQIYRLADENIPITLAISLH 216 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++ +RN+LVPI++ + ++ ++ A +Y + R+TFEY+++K +N S +A L + Sbjct: 217 APNDRIRNVLVPISKNFRIKDVVSAAEYYFKKTKR-RVTFEYILIKDMNASVENAKELCR 275 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 ++ +P INLIP N + + K+I F + + + G + +R G +I AACGQ Sbjct: 276 LIGKMPCHINLIPINSTEHIKLYPPEWKEIKRFQDILLKKGKETTVRKQMGDEIQAACGQ 335 Query: 365 LKSL 368 LK Sbjct: 336 LKRR 339 >gi|302844849|ref|XP_002953964.1| hypothetical protein VOLCADRAFT_121224 [Volvox carteri f. nagariensis] gi|300260776|gb|EFJ44993.1| hypothetical protein VOLCADRAFT_121224 [Volvox carteri f. nagariensis] Length = 438 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 123/371 (33%), Positives = 186/371 (50%), Gaps = 34/371 (9%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LLN 65 +++G ELE+ + G P R R Q+ + + ++G + ++ I + R LL Sbjct: 90 ITILGSELTELEDLAERYGQP----RFRAKQLLEGV-LKGAHSVEEITAIPKSWRAQLLA 144 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + DGTRK+LL+ I +ETV IP + R T+CVSSQVGC Sbjct: 145 DGVRSGRSRLHHSVGDEDGTRKFLLQLHDGRI-----VETVGIPTEDRLTVCVSSQVGCP 199 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC TG RNL EIL QVL + LG R++SN+V M Sbjct: 200 MRCTFCATGKGGFARNLAPHEILDQVLTVQEQLG-----------------RRVSNVVFM 242 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 GMGEPL N V ++ + +G IT+ST G I R+ + LA+SLH Sbjct: 243 GMGEPLLNLPAVVRAYQGLNQQVG--IGGAFITISTVGVPNAIPRLAASSLKATLAVSLH 300 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A + LR L+P + YPLE LI C Y ++ R+TFEY +L G+ND A L Sbjct: 301 APNQALRERLIPSAKAYPLEALIQDCVTYYRITGR-RVTFEYTLLSGVNDELEHARELTA 359 Query: 305 ILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +L+ + + +N+IP+NP E++ + + F ++ +G + +R RGL+ AAC Sbjct: 360 LLRRHDLMSHVNIIPWNPVDESEFVRPSRNRVFAFRRAVEAAGLACTVRETRGLEAAAAC 419 Query: 363 GQLKSLSKRIP 373 GQL++ ++ P Sbjct: 420 GQLRNRFQKQP 430 >gi|260171514|ref|ZP_05757926.1| ribosomal RNA large subunit methyltransferase N [Bacteroides sp. D2] Length = 322 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 124/338 (36%), Positives = 185/338 (54%), Gaps = 25/338 (7%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 QI W+Y + + M+++S + R LL Q++ + VDE S DGT K+L + Sbjct: 4 FTAKQIVSWLYEKKVASIDEMTNLSLKHRELLKQNYEVGAAAPVDEMRSVDGTVKYLYK- 62 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 +G +E+VYIP+ R TLCVSSQVGC + C FC TG Q NLTA +I+ Q+ Sbjct: 63 ----VGENHFVESVYIPDDDRATLCVSSQVGCKMNCKFCMTGKQGYTANLTASQIINQI- 117 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 K++N+VMMGMGEPL N D V K+L + + + G ++ Sbjct: 118 ------------------HSLPERDKLTNVVMMGMGEPLDNLDEVLKALELLTANYGYAW 159 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S +RITLST G + R EE LAISLH+ R+ L+P R Y + +++ ++ Sbjct: 160 SPKRITLSTVGLRKGLQRFIEENDCHLAISLHSPLTAQRSELMPAERAYSITEMVELLKN 219 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y S RR++FEY++ KG+NDS A L+K+L+G+ ++NLI F+ PG + +D Sbjct: 220 Y-DFSKQRRLSFEYIVFKGLNDSQVYAKELLKLLRGLDCRVNLIRFHAIPGVDLEGADMD 278 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 + F + + G + IR+ RG DI AACG L + + Sbjct: 279 TMTRFRDYLTSHGLFTTIRSSRGEDIFAACGMLSTAKQ 316 >gi|293189850|ref|ZP_06608564.1| radical SAM enzyme, Cfr family [Actinomyces odontolyticus F0309] gi|292821265|gb|EFF80210.1| radical SAM enzyme, Cfr family [Actinomyces odontolyticus F0309] Length = 426 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 125/377 (33%), Positives = 184/377 (48%), Gaps = 32/377 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 L + ++ L +G+P R Q+ + + D MSDI + ++ Sbjct: 65 HLADLDAVARKQVLKDLGLPA----FRADQLSRHYFTHFEADPANMSDIPAGMHEAVSDA 120 Query: 68 FSIIYPEIVDEKIS--CDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + P++V + +S DG T K L R ++E+V + R TLCVSSQ G Sbjct: 121 ---LLPKLVTKVVSLEADGGRTIKDLWRLYD-----GAQVESVLMRYPQRTTLCVSSQAG 172 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG L RNL+ EI+ QV A++ D + K+SN+V Sbjct: 173 CGMACPFCATGQMGLTRNLSTAEIVDQVREAQASCRD---------GKLAGGPTKLSNVV 223 Query: 184 MMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLA 240 MGMGEPL N+ V +L D G S R IT+ST G VP I ++ E + V LA Sbjct: 224 FMGMGEPLANYKTVVAALHRLIDPAPEGFGMSARNITVSTVGLVPAIKKLAGEGMPVTLA 283 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA +DLR+ L+PIN ++ + L+DA R Y L+ RR++ EY ++K +ND A Sbjct: 284 VSLHAPDDDLRDELIPINSRWKVGELLDAARGYF-LATGRRVSIEYALIKNMNDQEWRAQ 342 Query: 301 NLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 L L +N IP NP PG + S + F + ++ +G ++ IR RG D Sbjct: 343 LLADELNKRGHGWVHVNPIPLNPTPGSIWTASTRAAQEAFVKRLQDNGIATSIRDTRGSD 402 Query: 358 ILAACGQLKSLSKRIPK 374 I ACGQL + + Sbjct: 403 IDGACGQLATAVADGKR 419 >gi|154509153|ref|ZP_02044795.1| hypothetical protein ACTODO_01674 [Actinomyces odontolyticus ATCC 17982] gi|153798787|gb|EDN81207.1| hypothetical protein ACTODO_01674 [Actinomyces odontolyticus ATCC 17982] Length = 406 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 125/377 (33%), Positives = 185/377 (49%), Gaps = 32/377 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 L + ++ L +G+P R Q+ + + D MSDI + ++ Sbjct: 45 HLADLDAVARKQVLKDLGLPA----FRADQLSRHYFTHFQADPANMSDIPAGMHEAVSDA 100 Query: 68 FSIIYPEIVDEKIS--CDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + P++V + +S DG T K L R ++E+V + R TLCVSSQ G Sbjct: 101 ---LLPKLVTKVVSLEADGGRTIKDLWRLYD-----GAQVESVLMRYPQRTTLCVSSQAG 152 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG L RNL+ EI+ QV A++ D + K+SN+V Sbjct: 153 CGMACPFCATGQMGLTRNLSTAEIVDQVREAQASCRD---------GKLAGGPTKLSNVV 203 Query: 184 MMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLA 240 MGMGEPL N+ V +L D G S R IT+ST G VP I ++ E + V LA Sbjct: 204 FMGMGEPLANYKTVVAALHRLIDPAPEGFGMSARNITVSTVGLVPAIKKLAGEGMPVTLA 263 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA +DLR+ L+PIN ++ + L+DA R Y L+ RR++ EY ++K +ND A Sbjct: 264 VSLHAPDDDLRDELIPINSRWKVGELLDAARGYF-LATGRRVSIEYALIKDMNDQEWRAQ 322 Query: 301 NLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 L L +N IP NP PG + S + F + ++ +G ++ IR RG D Sbjct: 323 LLADELNKRGHGWVHVNPIPLNPTPGSIWTASTRAAQEAFVKRLQDNGIATSIRDTRGSD 382 Query: 358 ILAACGQLKSLSKRIPK 374 I ACGQL ++ + Sbjct: 383 IDGACGQLATVVADGKR 399 >gi|291518520|emb|CBK73741.1| 23S rRNA m(2)A-2503 methyltransferase [Butyrivibrio fibrisolvens 16/4] Length = 361 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 110/345 (31%), Positives = 180/345 (52%), Gaps = 30/345 (8%) Query: 2 NFLKKESLIGMMREELEEALL-KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 N + + + EL + + +G P + R Q+++W++ D+ M +I + + Sbjct: 3 NEKELTDIRSLNLTELTDFVTTDLGEP----KFRAKQLYEWMHQHLALDYDEMKNIPKSL 58 Query: 61 RHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119 + L + + + VD +IS DGTRK+L +E+V++ K ++C+S Sbjct: 59 KEKLVANCNYHPLKKVDLQISKIDGTRKYLFELYD-----GQMVESVWMSYKHGNSVCIS 113 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 SQVGC + C FC + VRNLT E+L Q+ + G+ ++ Sbjct: 114 SQVGCKMGCRFCASTLDGWVRNLTPSEMLGQIYAIQRDTGE-----------------RV 156 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238 SN+V+MG GEP+ N+DN+ K + + SD GL+ S+R IT+ST G VP I ++ EE + + Sbjct: 157 SNLVVMGTGEPMDNYDNIVKFVRLLSDENGLNISQRNITVSTCGIVPRIKQLAEEDLTIT 216 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LAISLHA + R L+P+ KY + LIDAC +Y + RITFEY ++ G+ND D Sbjct: 217 LAISLHAPNQQKRAELMPVANKYEIHELIDACEYYFNKTGR-RITFEYSLVGGVNDRDED 275 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR 343 A L +++ + +NLIP NP +++ F + +K Sbjct: 276 AAELGQLIGHLNCHVNLIPVNPIKERDFVSPSMDRAYAFQKRLKN 320 >gi|328752153|gb|EGF65769.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL020PA1] Length = 405 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 123/376 (32%), Positives = 189/376 (50%), Gaps = 35/376 (9%) Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69 I + EE +A+ G+P R QI ++ R D +D+ + R + + Sbjct: 44 IDLSIEERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWF 99 Query: 70 IIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCVSSQ 121 + V ++ SCD T K L R G +E+V + + R TLC+SSQ Sbjct: 100 PVLLTKVSQQ-SCDRGTTVKTLWRLH-----GGALVESVLMYYPATRHTAARATLCLSSQ 153 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC + C FC TG + RN++ EI+ QVL A L I +P ++ N Sbjct: 154 AGCGMACPFCATGQGGIQRNMSTAEIVSQVLAANRL---------IAAGEVPGASGRVHN 204 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238 IV MGMGEP+ N+ +V ++ + G+ S R +TLST G VP I + +E I V Sbjct: 205 IVFMGMGEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVT 264 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLHA ++LR+ L+P+NR++ ++ L+DA HY + R++ EY ++K IND Sbjct: 265 LAVSLHAPDDELRDELIPVNRRWKVDELLDAAWHYAEKTKR-RVSIEYALMKDINDQADR 323 Query: 299 ALNLIKILKGIP----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 A L + ++ A +NLIP NP PG + S +D F E ++R +R R Sbjct: 324 AAVLARQIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTR 383 Query: 355 GLDILAACGQLKSLSK 370 G +I ACGQL ++ + Sbjct: 384 GSEIDGACGQLAAVGR 399 >gi|327334229|gb|EGE75943.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL097PA1] Length = 405 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 123/376 (32%), Positives = 189/376 (50%), Gaps = 35/376 (9%) Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69 I + EE +A+ G+P R QI ++ R D +D+ + R + + Sbjct: 44 IDLSIEERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWF 99 Query: 70 IIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCVSSQ 121 + V ++ SCD T K L R G +E+V + + R TLC+SSQ Sbjct: 100 PVLLTKVSQQ-SCDRGTTVKTLWRLH-----GGALVESVLMYYPATRHSAARATLCLSSQ 153 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC + C FC TG + RN++ EI+ QVL A L I +P ++ N Sbjct: 154 AGCGMACPFCATGQGGIQRNMSTAEIVSQVLAANRL---------IAAGEVPGASGRVHN 204 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238 IV MGMGEP+ N+ +V ++ + G+ S R +TLST G VP I + +E I V Sbjct: 205 IVFMGMGEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVT 264 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLHA ++LR+ L+P+NR++ ++ L+DA HY + R++ EY ++K IND Sbjct: 265 LAVSLHAPDDELRDELIPVNRRWKVDELLDAAWHYAEKTKR-RVSIEYALMKDINDQADR 323 Query: 299 ALNLIKILKGIP----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 A L + ++ A +NLIP NP PG + S +D F E ++R +R R Sbjct: 324 AAVLARQIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTR 383 Query: 355 GLDILAACGQLKSLSK 370 G +I ACGQL ++ + Sbjct: 384 GSEIDGACGQLAAVGR 399 >gi|314978904|gb|EFT22998.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL072PA2] gi|315089293|gb|EFT61269.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL072PA1] Length = 405 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 123/376 (32%), Positives = 189/376 (50%), Gaps = 35/376 (9%) Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69 I + EE +A+ G+P R QI ++ R D +D+ + R + + Sbjct: 44 IDLSIEERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWF 99 Query: 70 IIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCVSSQ 121 + V ++ SCD T K L R G +E+V + + R TLC+SSQ Sbjct: 100 PVLLTKVSQQ-SCDRGTTVKTLWRLH-----GGALVESVLMYYPATRHSAARATLCLSSQ 153 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC + C FC TG + RN++ EI+ QVL A L I +P ++ N Sbjct: 154 AGCGMACPFCATGQGGIQRNMSTAEIVSQVLAANRL---------IAAGEVPGASGRVHN 204 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238 IV MGMGEP+ N+ +V ++ + G+ S R +TLST G VP I + +E I V Sbjct: 205 IVFMGMGEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVT 264 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLHA ++LR+ L+P+NR++ ++ L+DA HY + R++ EY ++K IND Sbjct: 265 LAVSLHAPDDELRDELIPVNRRWKVDELLDAAWHYAEKTKR-RVSIEYALMKDINDQADR 323 Query: 299 ALNLIKILKGIP----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 A L + ++ A +NLIP NP PG + S +D F E ++R +R R Sbjct: 324 AAVLARQIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTR 383 Query: 355 GLDILAACGQLKSLSK 370 G +I ACGQL ++ + Sbjct: 384 GSEIDGACGQLAAVGR 399 >gi|313829419|gb|EFS67133.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL063PA2] gi|315108996|gb|EFT80972.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL030PA2] Length = 418 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 123/376 (32%), Positives = 189/376 (50%), Gaps = 35/376 (9%) Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69 I + EE +A+ G+P R QI ++ R D +D+ + R + + Sbjct: 57 IDLSIEERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWF 112 Query: 70 IIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCVSSQ 121 + V ++ SCD T K L R G +E+V + + R TLC+SSQ Sbjct: 113 PVLLTKVSQQ-SCDRGTTVKTLWRLH-----GGALVESVLMYYPATRHSAARATLCLSSQ 166 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC + C FC TG + RN++ EI+ QVL A L I +P ++ N Sbjct: 167 AGCGMACPFCATGQGGIQRNMSTAEIVSQVLAANRL---------IAAGEVPGASGRVHN 217 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238 IV MGMGEP+ N+ +V ++ + G+ S R +TLST G VP I + +E I V Sbjct: 218 IVFMGMGEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVT 277 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLHA ++LR+ L+P+NR++ ++ L+DA HY + R++ EY ++K IND Sbjct: 278 LAVSLHAPDDELRDELIPVNRRWKVDELLDAAWHYAEKTKR-RVSIEYALMKDINDQADR 336 Query: 299 ALNLIKILKGIP----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 A L + ++ A +NLIP NP PG + S +D F E ++R +R R Sbjct: 337 AAVLARQIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTR 396 Query: 355 GLDILAACGQLKSLSK 370 G +I ACGQL ++ + Sbjct: 397 GSEIDGACGQLAAVGR 412 >gi|289426335|ref|ZP_06428078.1| 23S rRNA m2A2503 methyltransferase [Propionibacterium acnes SK187] gi|295131063|ref|YP_003581726.1| 23S rRNA m2A2503 methyltransferase [Propionibacterium acnes SK137] gi|289153063|gb|EFD01781.1| 23S rRNA m2A2503 methyltransferase [Propionibacterium acnes SK187] gi|291376435|gb|ADE00290.1| 23S rRNA m2A2503 methyltransferase [Propionibacterium acnes SK137] Length = 406 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 123/376 (32%), Positives = 189/376 (50%), Gaps = 35/376 (9%) Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69 I + EE +A+ G+P R QI ++ R D +D+ + R + + Sbjct: 45 IDLSIEERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWF 100 Query: 70 IIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCVSSQ 121 + V ++ SCD T K L R G +E+V + + R TLC+SSQ Sbjct: 101 PVLLTKVSQQ-SCDRGTTVKTLWRLH-----GGALVESVLMYYPATRHSAARATLCLSSQ 154 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC + C FC TG + RN++ EI+ QVL A L I +P ++ N Sbjct: 155 AGCGMACPFCATGQGGIQRNMSTAEIVSQVLAANRL---------IAAGEVPGASGRVHN 205 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238 IV MGMGEP+ N+ +V ++ + G+ S R +TLST G VP I + +E I V Sbjct: 206 IVFMGMGEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVT 265 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLHA ++LR+ L+P+NR++ ++ L+DA HY + R++ EY ++K IND Sbjct: 266 LAVSLHAPDDELRDELIPVNRRWKVDELLDAAWHYAEKTKR-RVSIEYALMKDINDQADR 324 Query: 299 ALNLIKILKGIP----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 A L + ++ A +NLIP NP PG + S +D F E ++R +R R Sbjct: 325 AAVLARQIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTR 384 Query: 355 GLDILAACGQLKSLSK 370 G +I ACGQL ++ + Sbjct: 385 GSEIDGACGQLAAVGR 400 >gi|50842992|ref|YP_056219.1| hypothetical protein PPA1514 [Propionibacterium acnes KPA171202] gi|81611434|sp|Q6A7K4|RLMN_PROAC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|50840594|gb|AAT83261.1| conserved protein [Propionibacterium acnes KPA171202] gi|313763570|gb|EFS34934.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL013PA1] gi|313773509|gb|EFS39475.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL074PA1] gi|313793963|gb|EFS41987.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL110PA1] gi|313801350|gb|EFS42601.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL110PA2] gi|313807970|gb|EFS46451.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL087PA2] gi|313811561|gb|EFS49275.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL083PA1] gi|313819539|gb|EFS57253.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL046PA2] gi|313822138|gb|EFS59852.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL036PA1] gi|313823628|gb|EFS61342.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL036PA2] gi|313825952|gb|EFS63666.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL063PA1] gi|313831301|gb|EFS69015.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL007PA1] gi|313834912|gb|EFS72626.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL056PA1] gi|313839929|gb|EFS77643.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL086PA1] gi|314914724|gb|EFS78555.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL005PA4] gi|314919314|gb|EFS83145.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL050PA1] gi|314920776|gb|EFS84607.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL050PA3] gi|314924723|gb|EFS88554.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL036PA3] gi|314930455|gb|EFS94286.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL067PA1] gi|314954388|gb|EFS98794.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL027PA1] gi|314957479|gb|EFT01582.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL002PA1] gi|314962106|gb|EFT06207.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL002PA2] gi|314963685|gb|EFT07785.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL082PA1] gi|314968487|gb|EFT12585.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL037PA1] gi|314974177|gb|EFT18273.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL053PA1] gi|314976533|gb|EFT20628.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL045PA1] gi|314984352|gb|EFT28444.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL005PA1] gi|314986542|gb|EFT30634.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL005PA2] gi|314990901|gb|EFT34992.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL005PA3] gi|315079535|gb|EFT51528.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL053PA2] gi|315083603|gb|EFT55579.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL027PA2] gi|315087120|gb|EFT59096.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL002PA3] gi|315095316|gb|EFT67292.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL038PA1] gi|315100320|gb|EFT72296.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL046PA1] gi|315106754|gb|EFT78730.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL030PA1] gi|327328421|gb|EGE70183.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL096PA2] gi|327329713|gb|EGE71469.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL096PA3] gi|327444208|gb|EGE90862.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL043PA2] gi|327444913|gb|EGE91567.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL043PA1] gi|327446398|gb|EGE93052.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL013PA2] gi|327452014|gb|EGE98668.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL092PA1] gi|327454949|gb|EGF01604.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL087PA3] gi|327457765|gb|EGF04420.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL083PA2] gi|328755218|gb|EGF68834.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL087PA1] gi|328758303|gb|EGF71919.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL025PA2] gi|328760026|gb|EGF73607.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL099PA1] gi|332675942|gb|AEE72758.1| ribosomal RNA large subunit methyltransferase N [Propionibacterium acnes 266] Length = 405 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 123/376 (32%), Positives = 189/376 (50%), Gaps = 35/376 (9%) Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69 I + EE +A+ G+P R QI ++ R D +D+ + R + + Sbjct: 44 IDLSIEERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWF 99 Query: 70 IIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCVSSQ 121 + V ++ SCD T K L R G +E+V + + R TLC+SSQ Sbjct: 100 PVLLTKVSQQ-SCDRGTTVKTLWRLH-----GGALVESVLMYYPATRHSAARATLCLSSQ 153 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC + C FC TG + RN++ EI+ QVL A L I +P ++ N Sbjct: 154 AGCGMACPFCATGQGGIQRNMSTAEIVSQVLAANRL---------IAAGEVPGASGRVHN 204 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238 IV MGMGEP+ N+ +V ++ + G+ S R +TLST G VP I + +E I V Sbjct: 205 IVFMGMGEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVT 264 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLHA ++LR+ L+P+NR++ ++ L+DA HY + R++ EY ++K IND Sbjct: 265 LAVSLHAPDDELRDELIPVNRRWKVDELLDAAWHYAEKTKR-RVSIEYALMKDINDQADR 323 Query: 299 ALNLIKILKGIP----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 A L + ++ A +NLIP NP PG + S +D F E ++R +R R Sbjct: 324 AAVLARQIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTR 383 Query: 355 GLDILAACGQLKSLSK 370 G +I ACGQL ++ + Sbjct: 384 GSEIDGACGQLAAVGR 399 >gi|302766119|ref|XP_002966480.1| hypothetical protein SELMODRAFT_85220 [Selaginella moellendorffii] gi|300165900|gb|EFJ32507.1| hypothetical protein SELMODRAFT_85220 [Selaginella moellendorffii] Length = 425 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 119/372 (31%), Positives = 194/372 (52%), Gaps = 36/372 (9%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-NQH 67 L+G ++L++ ++G R R Q++ +Y + Q +++S+ R L ++ Sbjct: 73 LLGKSEKQLQDLCEEMG----EKRFRGKQMYLLLYKVRKAEIQEFTNLSKGFREKLISEG 128 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP---EKSRGTLCVSSQVGC 124 + + I + S DGT K LL+ + IETV IP E +R T+CVSSQVGC Sbjct: 129 WEVGRSPIHHKVNSVDGTIKVLLKLKDSRL-----IETVGIPADEENNRLTVCVSSQVGC 183 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 L C+FC TG R+L EI+ QVL+ + ++SN+V Sbjct: 184 PLRCAFCATGKGGFTRSLKPHEIIEQVLVMEEIFKQ-----------------RVSNVVF 226 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISL 243 MGMGEP+ N +V + ++ + +R IT+ST G +I ++ ++ LA+SL Sbjct: 227 MGMGEPMLNMASVLAAHRCLNED--IGIGQRMITISTVGVPNSIRKLAAHKLQSTLAVSL 284 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA + LR +VP + YPL+ L++ C+ Y ++ R++FEY +L G+NDS A L Sbjct: 285 HAPNQRLREQIVPSAKSYPLDALMEDCKEYFSITGR-RVSFEYTLLAGVNDSKELAFELG 343 Query: 304 KILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 ++L + +NLIP+NP + QK + TF E + + ++ +R RGLD AA Sbjct: 344 ELLHHWDMSHHVNLIPYNPVADSLFQRPWQKSVQTFVETLAKCRVNASVRQTRGLDANAA 403 Query: 362 CGQLKSLSKRIP 373 CGQL++ ++ P Sbjct: 404 CGQLRNQFQKTP 415 >gi|297823853|ref|XP_002879809.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297325648|gb|EFH56068.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp. lyrata] Length = 419 Score = 363 bits (931), Expect = 3e-98, Method: Composition-based stats. Identities = 124/385 (32%), Positives = 189/385 (49%), Gaps = 36/385 (9%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH- 67 LIGM EL++ + + + R Q+ IY R + + S++ Q R L + Sbjct: 52 LIGMSEPELQQLAINL-VLIFQEGYRGKQLHHLIYKRKVNKVEDFSNLPQTFRKELVEGG 110 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCVSSQ 121 F + I + DGT K + + IETV IP + R T CVSSQ Sbjct: 111 FKVGRSPIYQTVTATDGTIK-----LLLKLEDNLLIETVGIPVQDDEKGITRLTACVSSQ 165 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC L CSFC TG RNL EI+ QVL + +++N Sbjct: 166 VGCPLRCSFCATGKGGFSRNLQRHEIIEQVLAIEDVFKH-----------------RVTN 208 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLA 240 +V MGMGEP+ N +V + + + +R IT+ST G I ++ ++ LA Sbjct: 209 VVFMGMGEPMLNLKSVLDAHRCLNKD--IEIGQRMITISTVGVPNTIKKLASHKLQSTLA 266 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA + LR +VP + YPLE ++ CR Y +N R++FEY +L G+ND A+ Sbjct: 267 VSLHAPNQSLREKIVPSAKAYPLEAIMKDCRDYFQETNR-RVSFEYALLAGVNDQVEHAV 325 Query: 301 NLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 L ++L+ G +NLIP+NP G EY +K ++ F+ ++ ++ +R RGLD Sbjct: 326 ELAELLREWGKTYHVNLIPYNPIEGSEYKRPYKKAVLAFASALESRKITASVRQTRGLDA 385 Query: 359 LAACGQLKSLSKRIPKVPRQEMQIT 383 AACGQL++ ++ P V + Q + Sbjct: 386 SAACGQLRNKFQKSPLVTETDGQES 410 >gi|301167934|emb|CBW27519.1| conserved hypothetical protein [Bacteriovorax marinus SJ] Length = 356 Score = 363 bits (931), Expect = 3e-98, Method: Composition-based stats. Identities = 137/372 (36%), Positives = 208/372 (55%), Gaps = 24/372 (6%) Query: 4 LKKE--SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 + K+ SL + EEL E L + G + Q++ WI+ R DF S++S +++ Sbjct: 1 MAKKEVSLYSLTLEELREYLKEQGF----AKFAADQVYNWIFKRYEFDFDKWSNVSGKIK 56 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSS 120 ++ P++V +S DGTRK+L+ + +E V IP K+ R TLCVSS Sbjct: 57 KHFEENLDTFLPKVVWNGLSKDGTRKFLI-----GMNDSNTVEAVAIPAKNNRLTLCVSS 111 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q+GC++ C+FC+TGT L R+LT E++ Q L L + E +++ Sbjct: 112 QIGCAIGCTFCHTGTMGLTRHLTTGEVVGQYLAVTKWLRENVDEEA-----------RLT 160 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 NIV MG GEPL NF+NVK++ + + G+ +R+ITLSTSG VP I ++ + V +A Sbjct: 161 NIVYMGQGEPLHNFNNVKQATKVFMEEKGIGLGQRKITLSTSGLVPQIEKLQDFPPVNVA 220 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ISLHA N++R L+PIN+ Y L L +A R P ++ IT+EY+++ +ND D Sbjct: 221 ISLHAAHNNIRTELMPINKAYDLTRLFEAIRKIPLKAHRW-ITYEYILIADLNDRVEDLD 279 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L +L +K+NLIPFN +P ++ + I F + + R GY RT +G DILA Sbjct: 280 GLSDLLDKKVSKVNLIPFNEYPESKFKRPSDEKIKWFQDELNRRGYICTTRTTKGTDILA 339 Query: 361 ACGQLKSLSKRI 372 ACGQLKS ++ Sbjct: 340 ACGQLKSEHDKL 351 >gi|224437065|ref|ZP_03658046.1| hypothetical protein HcinC1_03815 [Helicobacter cinaedi CCUG 18818] gi|313143537|ref|ZP_07805730.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] gi|313128568|gb|EFR46185.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] Length = 372 Score = 363 bits (931), Expect = 4e-98, Method: Composition-based stats. Identities = 143/393 (36%), Positives = 213/393 (54%), Gaps = 39/393 (9%) Query: 1 MNFLK-KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59 M L+ K SL EL+ L R Q++ W+Y R + M +IS+ Sbjct: 1 MGILESKPSLYAYTLNELKSLL--------SPSFRAKQVYHWLYHRYENNIALMDNISKA 52 Query: 60 VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEI--------ETVYIPEK 111 ++ L HF I V + S DG++K+L + V I E+ I + Sbjct: 53 MQEHLQSHFIISQITPVQIEKSSDGSKKYLFQTKDGHTFESVLIQMKSKELDESGEIVKG 112 Query: 112 SRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMV 171 + T+C+SSQ+GC + C+FC+T VRNL A EI+ QV++ + P Sbjct: 113 EKWTMCLSSQIGCKVGCAFCFTAKGGFVRNLNAGEIVEQVVMMKRDSNIAP--------- 163 Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231 K NIV MGMGEPL N NV +++ I ++ GLS S RR T+STSG P I + Sbjct: 164 -----NKRVNIVYMGMGEPLHNLANVSQAIKILAELDGLSISARRQTISTSGIAPKIKEL 218 Query: 232 GE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 GE +GV LAISLHAVS++LR+ L+PIN+ Y + +++ R +P + + +R+ FEY+M+K Sbjct: 219 GELNLGVQLAISLHAVSDELRSKLMPINKAYNIAEVLNEVRAFP-VDSRKRVMFEYLMIK 277 Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI 350 G+ND + A L+ +L GI AK+NLI FNP G E+ +D+ F++ + + G I Sbjct: 278 GVNDDIKAAKKLLALLNGIKAKVNLILFNPHEGSEFERPLMEDVRAFADFLVKKGLLCTI 337 Query: 351 RTPRGLDILAACGQLKSLSKRIPKVPRQEMQIT 383 R +G+DI AACGQL+ K+ R+ +IT Sbjct: 338 RESKGIDISAACGQLR------EKIKRENGEIT 364 >gi|218461404|ref|ZP_03501495.1| hypothetical protein RetlK5_18727 [Rhizobium etli Kim 5] Length = 278 Score = 363 bits (931), Expect = 4e-98, Method: Composition-based stats. Identities = 192/267 (71%), Positives = 222/267 (83%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 TLC+SSQVGC+LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR LGDFP E +G ++P+ Sbjct: 1 TLCISSQVGCTLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPA 60 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234 GRK+SNIVMMGMGEPL NFD VK++L IA+D GLS SKRR+TLSTSG VP I R GEE Sbjct: 61 EGRKVSNIVMMGMGEPLYNFDAVKQALLIATDGDGLSLSKRRVTLSTSGVVPEIFRTGEE 120 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 IGVMLAISLHAV +DLR+ILVPIN+KYPL+ LIDAC+ YPGLSNARRITFEYVMLK +ND Sbjct: 121 IGVMLAISLHAVRDDLRDILVPINKKYPLKELIDACKAYPGLSNARRITFEYVMLKDVND 180 Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 S DA LIK+LKG+PAKINLIPFNPWPG Y CSD + I F++ I +GY+SPIRTPR Sbjct: 181 SLEDARGLIKLLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPR 240 Query: 355 GLDILAACGQLKSLSKRIPKVPRQEMQ 381 G DILAACGQLKS S+R+ K R + Sbjct: 241 GRDILAACGQLKSESERMRKTERLAFE 267 >gi|320096228|ref|ZP_08027813.1| cfr family radical SAM enzyme [Actinomyces sp. oral taxon 178 str. F0338] gi|319976833|gb|EFW08591.1| cfr family radical SAM enzyme [Actinomyces sp. oral taxon 178 str. F0338] Length = 399 Score = 363 bits (931), Expect = 4e-98, Method: Composition-based stats. Identities = 124/374 (33%), Positives = 183/374 (48%), Gaps = 32/374 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 L + + L +G+P R Q+ + + R D MSDI +R + Sbjct: 35 HLADLDAAGRKAVLAGMGLPP----FRADQLSRHYFERFEADPADMSDIPASMRQRVRDS 90 Query: 68 FSIIYPEIVDEKIS--CDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + P +V +S D T K L R ++E+V + R TLCVSSQ G Sbjct: 91 ---LLPPLVSGVVSLRADAGRTVKDLWRLYD-----GAQVESVLMRYPQRTTLCVSSQAG 142 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG L RNL+ EI+ QV LA++ D + +++N+V Sbjct: 143 CGMACPFCATGQMGLTRNLSTAEIVDQVRLAQAACRD---------GALAGGPTRLTNVV 193 Query: 184 MMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLA 240 MGMGEPL N+ V +L D G S R +T+ST G VP I R+ E + V LA Sbjct: 194 FMGMGEPLANYKTVVGALHRLVDPVPEGFGMSARNVTVSTVGLVPAIRRLAGEGLPVTLA 253 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA +DLR+ L+P+N ++ + L+DA RHY ++ R++ EY ++K +ND A Sbjct: 254 VSLHAPDDDLRDDLIPVNSRWKVGELLDAARHYFLVTGR-RVSIEYALIKDMNDQVWRAQ 312 Query: 301 NLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 L L A +N IP NP PG + S ++ F ++ +G + IR RG D Sbjct: 313 LLADELNRRGKGWAHVNPIPLNPTPGSIWTASTRRSQDAFVATLRDNGVVTSIRDTRGSD 372 Query: 358 ILAACGQLKSLSKR 371 I ACGQL + + + Sbjct: 373 IDGACGQLATSAAK 386 >gi|289428733|ref|ZP_06430416.1| 23S rRNA m2A2503 methyltransferase [Propionibacterium acnes J165] gi|289158131|gb|EFD06351.1| 23S rRNA m2A2503 methyltransferase [Propionibacterium acnes J165] Length = 376 Score = 363 bits (931), Expect = 4e-98, Method: Composition-based stats. Identities = 123/376 (32%), Positives = 189/376 (50%), Gaps = 35/376 (9%) Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69 I + EE +A+ G+P R QI ++ R D +D+ + R + + Sbjct: 15 IDLSIEERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWF 70 Query: 70 IIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCVSSQ 121 + V ++ SCD T K L R G +E+V + + R TLC+SSQ Sbjct: 71 PVLLTKVSQQ-SCDRGTTVKTLWRLH-----GGALVESVLMYYPATRHSAARATLCLSSQ 124 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC + C FC TG + RN++ EI+ QVL A L I +P ++ N Sbjct: 125 AGCGMACPFCATGQGGIQRNMSTAEIVSQVLAANRL---------IAAGEVPGASGRVHN 175 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238 IV MGMGEP+ N+ +V ++ + G+ S R +TLST G VP I + +E I V Sbjct: 176 IVFMGMGEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVT 235 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLHA ++LR+ L+P+NR++ ++ L+DA HY + R++ EY ++K IND Sbjct: 236 LAVSLHAPDDELRDELIPVNRRWKVDELLDAAWHYAEKTKR-RVSIEYALMKDINDQADR 294 Query: 299 ALNLIKILKGIP----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 A L + ++ A +NLIP NP PG + S +D F E ++R +R R Sbjct: 295 AAVLARQIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTR 354 Query: 355 GLDILAACGQLKSLSK 370 G +I ACGQL ++ + Sbjct: 355 GSEIDGACGQLAAVGR 370 >gi|314923760|gb|EFS87591.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL001PA1] gi|314966226|gb|EFT10325.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL082PA2] gi|314981992|gb|EFT26085.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL110PA3] gi|315090903|gb|EFT62879.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL110PA4] gi|315095116|gb|EFT67092.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL060PA1] gi|315104345|gb|EFT76321.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL050PA2] gi|327328106|gb|EGE69875.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL103PA1] Length = 405 Score = 363 bits (931), Expect = 4e-98, Method: Composition-based stats. Identities = 123/376 (32%), Positives = 189/376 (50%), Gaps = 35/376 (9%) Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69 I + EE +A+ +G+P R QI ++ R D +D+ + R + + Sbjct: 44 IDLSIEERVQAVKDLGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWF 99 Query: 70 IIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCVSSQ 121 + V ++ SCD T K L R G +E+V + + R TLC+SSQ Sbjct: 100 PVLLTKVSQQ-SCDRGTTVKTLWRLH-----GGALVESVLMYYPATRHSAARTTLCLSSQ 153 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC + C FC TG + RN++ EI+ QVL A L I +P ++ N Sbjct: 154 AGCGMACPFCATGQGGIQRNMSTAEIVSQVLAANRL---------IAAGEVPGASGRVHN 204 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238 IV MGMGEP+ N+ +V ++ + G+ S R +TLST G VP I + +E I V Sbjct: 205 IVFMGMGEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVT 264 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLHA ++LR+ L+P+NR++ ++ L+DA HY + R++ EY ++K IND Sbjct: 265 LAVSLHAPDDELRDELIPVNRRWKVDELLDAAWHYAEKTKR-RVSIEYALMKDINDQADR 323 Query: 299 ALNLIKILKGIP----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 A L + ++ A +NLIP NP PG + S D F E ++R +R R Sbjct: 324 AAVLARQIRRRGDWTWAHVNLIPLNPTPGSRWTASRPADQDAFVETLERWKIPVTVRDTR 383 Query: 355 GLDILAACGQLKSLSK 370 G +I ACGQL ++ + Sbjct: 384 GSEIDGACGQLAAVGR 399 >gi|282854662|ref|ZP_06263997.1| 23S rRNA m2A2503 methyltransferase [Propionibacterium acnes J139] gi|282582244|gb|EFB87626.1| 23S rRNA m2A2503 methyltransferase [Propionibacterium acnes J139] Length = 376 Score = 363 bits (931), Expect = 4e-98, Method: Composition-based stats. Identities = 123/376 (32%), Positives = 189/376 (50%), Gaps = 35/376 (9%) Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69 I + EE +A+ +G+P R QI ++ R D +D+ + R + + Sbjct: 15 IDLSIEERVQAVKDLGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWF 70 Query: 70 IIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCVSSQ 121 + V ++ SCD T K L R G +E+V + + R TLC+SSQ Sbjct: 71 PVLLTKVSQQ-SCDRGTTVKTLWRLH-----GGALVESVLMYYPATRHSAARTTLCLSSQ 124 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC + C FC TG + RN++ EI+ QVL A L I +P ++ N Sbjct: 125 AGCGMACPFCATGQGGIQRNMSTAEIVSQVLAANRL---------IAAGEVPGASGRVHN 175 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238 IV MGMGEP+ N+ +V ++ + G+ S R +TLST G VP I + +E I V Sbjct: 176 IVFMGMGEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVT 235 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLHA ++LR+ L+P+NR++ ++ L+DA HY + R++ EY ++K IND Sbjct: 236 LAVSLHAPDDELRDELIPVNRRWKVDELLDAAWHYAEKTKR-RVSIEYALMKDINDQADR 294 Query: 299 ALNLIKILKGIP----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 A L + ++ A +NLIP NP PG + S D F E ++R +R R Sbjct: 295 AAVLARQIRRRGDWTWAHVNLIPLNPTPGSRWTASRPADQDAFVETLERWKIPVTVRDTR 354 Query: 355 GLDILAACGQLKSLSK 370 G +I ACGQL ++ + Sbjct: 355 GSEIDGACGQLAAVGR 370 >gi|157273452|gb|ABV27351.1| radical SAM enzyme Cfr family protein [Candidatus Chloracidobacterium thermophilum] Length = 363 Score = 363 bits (931), Expect = 4e-98, Method: Composition-based stats. Identities = 132/368 (35%), Positives = 198/368 (53%), Gaps = 25/368 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + ++G +++ + + G+P R Q+++ ++ + + + +S + + VR L Sbjct: 11 QDMLGQTCQQMCALMAERGLPA----YRGRQLFQALHRQLVETPEEISVLPRAVRTELAA 66 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 S+ + S DGTR++L + + IETV+IP++ R TLC+SSQ GC + Sbjct: 67 EASLQPLSLAGIFESLDGTRRYLFK-----VHDGYSIETVWIPDRGRVTLCLSSQAGCPM 121 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC T T L RNLTA EI+ QVL + N+V+MG Sbjct: 122 RCAFCATATLGLQRNLTAGEIVAQVLYVLRDTVRQRQQPRPAAV----------NLVLMG 171 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHA 245 MGEPL N+D+V +L + +D GL RR+TLST G VP I +G E LA+SL A Sbjct: 172 MGEPLLNYDHVLHALRVLADPEGLHIVPRRVTLSTVGIVPRIIALGREPDRPRLAVSLTA 231 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +++LR L+P+N YPLE L +AC +P RITFEYV+L G+NDS A L++ Sbjct: 232 ATDELRARLMPVNLTYPLEALREACLAFP-RHPGERITFEYVLLDGVNDSEDQARALLRW 290 Query: 306 LKGIPA----KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L + A K+NLIP NP PG + + ++ F ++ G + +R PRG DI AA Sbjct: 291 LAPLRAQEAAKVNLIPHNPVPGIPFRPPKLERVLRFQALLRAKGLPTYLRRPRGQDISAA 350 Query: 362 CGQLKSLS 369 CG L + S Sbjct: 351 CGMLAATS 358 >gi|297624942|ref|YP_003706376.1| radical SAM domain-containing protein [Truepera radiovictrix DSM 17093] gi|297166122|gb|ADI15833.1| radical SAM enzyme, Cfr family [Truepera radiovictrix DSM 17093] Length = 349 Score = 363 bits (931), Expect = 4e-98, Method: Composition-based stats. Identities = 120/361 (33%), Positives = 179/361 (49%), Gaps = 29/361 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +SL+ + + L R +Q+ W+Y RG ++ M+++ + R L Sbjct: 5 QSLLELSPDALPA--------PDAQPYRRAQLAAWLYQRGALSWEAMTNLPRAWRAELGA 56 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + + ++ +S D + ++LL P + E VY+P + R TLCVSS VGC Sbjct: 57 RYRLSPFVRLERFVSADASVRYLLTLPD-----GKQTEAVYMPYRGRKTLCVSSMVGCPA 111 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC TG RNL+ EIL Q+L+ G P R+I N+V+MG Sbjct: 112 GCAFCATGALGFGRNLSRAEILGQLLVVAQAEGIAP--------------REIRNVVLMG 157 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHA 245 MGE L N+DN ++ GL S RRITLST G I R+ E + ++LA+SLHA Sbjct: 158 MGEALLNYDNALGAIRTMIHPEGLDMSPRRITLSTVGLPGRIRRLAAERLPLVLAVSLHA 217 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 R ++P + +E +I A + + RR+T EY ML G+ND+ A L+ + Sbjct: 218 PDEKTRREIIPTAHAHAIEEIIAALHDWQA-AGGRRVTIEYTMLAGVNDALWQAEALVAL 276 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G+ +NLIPFNPW + S + I F + +G S +R RG D ACGQL Sbjct: 277 LRGLVVHVNLIPFNPWGASPFRSSSRAQIARFERVLTGAGLSVSVRFSRGRDTGGACGQL 336 Query: 366 K 366 Sbjct: 337 A 337 >gi|320101749|ref|YP_004177340.1| 23S rRNA m(2)A-2503 methyltransferase [Isosphaera pallida ATCC 43644] gi|319749031|gb|ADV60791.1| 23S rRNA m(2)A-2503 methyltransferase [Isosphaera pallida ATCC 43644] Length = 400 Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats. Identities = 129/359 (35%), Positives = 191/359 (53%), Gaps = 26/359 (7%) Query: 11 GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70 G L L + G P R+ Q+ +WI+ + R F M+D+ +R L +++ Sbjct: 36 GATLPGLTAWLAERGEPA----YRSDQVARWIFQKRARSFAVMTDLPAGLRLALESSWAV 91 Query: 71 IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130 ++ + + DGT K LL IETV + E+ R T+CVSSQVGC + C F Sbjct: 92 YQTRVIRRQTATDGTDKLLLECRD-----GRRIETVLMREEDRRTVCVSSQVGCGMGCVF 146 Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 C +G + + RNLT EI ++L AR LL + +++NIV+MGMGE Sbjct: 147 CASGLKGVERNLTVGEITEELLHARDLLPEH---------------ERLTNIVVMGMGES 191 Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSND 249 L N +N+ +L GL S+R +T+ST G I R+ + LA+SLHA + + Sbjct: 192 LANLENLIAALDRICSPSGLGLSQRAVTISTVGLPEKIKRLAALDRRYHLAVSLHAPTEE 251 Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309 LR+ LVPIN K L +++A HY ++ + +TFEYV+L GIND RDA +L+ +L G Sbjct: 252 LRDQLVPINHKVGLRAVMEAADHYFAVTGRQ-VTFEYVLLGGINDRDRDARDLVALLAGR 310 Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 A +NLIP+NP G Y +D+ F ++ G S +R +G I AACGQL+ Sbjct: 311 KAHVNLIPYNPVAGLPYERPAPRDLDRFVRRCRQGGLSVSVRKTKGKRIDAACGQLRRR 369 >gi|306820530|ref|ZP_07454163.1| cfr family radical SAM enzyme [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551444|gb|EFM39402.1| cfr family radical SAM enzyme [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 360 Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats. Identities = 109/362 (30%), Positives = 190/362 (52%), Gaps = 30/362 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++++ +E + L++ G + R QI+ +Y +GI+ F +++I + ++ + + Sbjct: 18 KNILDYQFDEFQNILIENGFE----KYRAKQIYPLVY-KGIKTFDEINNIPKNLKDFMLE 72 Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +F + I ++ S D T+K+L++ I IE V + K + C+SSQVGC Sbjct: 73 NFVVNSVSIYEKLQSKKDYTKKYLMKLEDGNI-----IECVLMKYKFGLSACISSQVGCL 127 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC + VR+L++ E++ Q+L + +G+ KISNIV+M Sbjct: 128 MGCTFCASTVGSKVRDLSSGEMIGQILAMSNDVGE-----------------KISNIVIM 170 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244 G GEP N+ N+ K + L+ R IT+ST G I + ++ + LAISLH Sbjct: 171 GSGEPFDNYGNLLKFFDLVMSKDTLNIGARHITVSTCGLADKIIDFADRKLQINLAISLH 230 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 + + R+ ++PI+RK+ ++ L+ A +Y +N R+T+EY ++ +NDS DA L++ Sbjct: 231 NPNQEKRSQIMPISRKFKIDELMRAVEYYISKTNR-RVTYEYALINEVNDSEEDAKLLVQ 289 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 ++K INLIP N Y D I F + ++G ++ IR G DI ACGQ Sbjct: 290 LVKNQLCHINLIPVNSTEHSNYKKPDNIRIQKFMNILSKNGINATIRREMGTDINGACGQ 349 Query: 365 LK 366 L+ Sbjct: 350 LR 351 >gi|168015505|ref|XP_001760291.1| predicted protein [Physcomitrella patens subsp. patens] gi|162688671|gb|EDQ75047.1| predicted protein [Physcomitrella patens subsp. patens] Length = 433 Score = 362 bits (930), Expect = 5e-98, Method: Composition-based stats. Identities = 129/383 (33%), Positives = 198/383 (51%), Gaps = 27/383 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRG--IRDFQGMSDISQEVRH 62 +K SL M ELE + G R + +W+ +Y G + + +++E Sbjct: 71 RKVSLKDMTFPELERWVESHGHKAS----RAAMLWRHLYGNGKWVESPAVIPRLNKEFVS 126 Query: 63 LLNQHFSIIY-PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-SRGTLCVSS 120 LL + ++ D + DGTRK + +ETV IP R T+CVSS Sbjct: 127 LLEERAEFAPNLQLRDVHTARDGTRKLVFFLEEY----GASVETVVIPGPRGRVTVCVSS 182 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q+GC++ C FC+T L NL+ +I+ Q+++A ++ G ++ Sbjct: 183 QIGCAMNCQFCFTAKMGLRGNLSTAQIVEQLVVASRIVSKDLG--------------HVT 228 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 N+V MGMGEPL N D+V ++ I + GL S R++T+STSG VP I + LA Sbjct: 229 NVVFMGMGEPLHNIDSVIRAAEIMVNDKGLHLSPRKVTISTSGLVPQIRKFCRSSECALA 288 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRH-YPGLSNARRITFEYVMLKGINDSPRDA 299 +SL+A ++D+R+ ++PINRKY + L+D + + EYVMLK +NDS DA Sbjct: 289 VSLNATTDDIRDQIMPINRKYNIRTLLDCVKEEMITHRPGESVFLEYVMLKNVNDSEEDA 348 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 LI+++K IP KINLI FN PG + + +++ F + + +G IR RG D Sbjct: 349 TRLIELVKDIPCKINLIMFNSHPGSAFEPTPLVEVLRFRDRVADAGLVVHIRNSRGDDEK 408 Query: 360 AACGQLKSLSKRIPKVPRQEMQI 382 ACGQL ++ R P+ +QEMQ Sbjct: 409 MACGQLGTVLPRSPRRRKQEMQE 431 >gi|114775703|ref|ZP_01451271.1| hypothetical protein SPV1_05223 [Mariprofundus ferrooxydans PV-1] gi|114553814|gb|EAU56195.1| hypothetical protein SPV1_05223 [Mariprofundus ferrooxydans PV-1] Length = 364 Score = 362 bits (930), Expect = 5e-98, Method: Composition-based stats. Identities = 143/376 (38%), Positives = 207/376 (55%), Gaps = 21/376 (5%) Query: 1 MNFLKKES------LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMS 54 M +K + L + +L+ + P + R Q+ W +GI + M Sbjct: 1 MTQTRKTATADLAQLSALNLSDLQGLMEAWMQP----KFRAKQVLDWC-NKGILNPALMK 55 Query: 55 DISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG 114 +I +R L ++ + S DGTRK++ + G + IE V+IPE+ RG Sbjct: 56 NIPDALRDRLLTSLMCEPLRLIRRECSTDGTRKYVFALNRPRLAGKM-IEAVFIPEEKRG 114 Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 T+C+SSQVGC L C FC+TGTQ NL+A EI+ QVL ++ L P +D+ Sbjct: 115 TVCISSQVGCVLDCPFCHTGTQGFEGNLSAGEIVAQVLAIKADLRHEPMTDDLHND---- 170 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234 +++IV MGMGEPL N + V SL+I D GL S+RRIT+STSG P I R+G Sbjct: 171 ----VTHIVYMGMGEPLANEEGVHGSLAILMDEDGLKLSRRRITVSTSGLTPQIERLGAV 226 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 V LAISLH+ ++ R++LVPINRK+PL L + YP L+ R IT EYV+L G+ND Sbjct: 227 HPVNLAISLHSAIDEKRDLLVPINRKHPLAQLRECLDAYP-LATQRHITLEYVLLDGVND 285 Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 D L + + +NLI FNP+PG Y + ++ + F++ + G + +R R Sbjct: 286 QAEDLAALARFVNPEREWVNLIQFNPYPGTSYRGTAKESMNQFAQHLISKGIRATVRRSR 345 Query: 355 GLDILAACGQLKSLSK 370 G DI+AACGQLK+ +K Sbjct: 346 GQDIMAACGQLKADTK 361 >gi|283457572|ref|YP_003362155.1| putative Fe-S-cluster redox enzyme [Rothia mucilaginosa DY-18] gi|283133570|dbj|BAI64335.1| predicted Fe-S-cluster redox enzyme [Rothia mucilaginosa DY-18] Length = 419 Score = 362 bits (930), Expect = 5e-98, Method: Composition-based stats. Identities = 121/371 (32%), Positives = 183/371 (49%), Gaps = 19/371 (5%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + + E L ++G R SQ+ K + R + D M+D+ + R + Sbjct: 59 KHIADFDMAGRREFLKELGY----QSFRASQLSKHYFERLVTDPAEMTDLPAKDREQMVA 114 Query: 67 HFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 V + DG T K + R + IE+V + +R T+C+SSQ GC Sbjct: 115 QAMPQLLTPV-RTLEADGGDTLKVVHRLFDGAL-----IESVIMRYDNRVTMCISSQAGC 168 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG Q L RNL+ EI+ QV+ L G E+ EG + ++SNIV Sbjct: 169 GMNCPFCATGQQGLTRNLSTAEIVEQVVAGARYLKQMKGLEEAEGGSEDTRPLRVSNIVF 228 Query: 185 MGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAI 241 MGMGE L N+ ++ D GL S R +T+ST G VP I + E++ + LA+ Sbjct: 229 MGMGEALANYKATMGAVHRLIDPSPEGLGISARGLTMSTVGLVPGIRKFELEKLPITLAL 288 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++LR+ L+PIN+++ ++ +DA Y + RR++ EY +++ IND A Sbjct: 289 SLHAPDDELRDELIPINQRWKVDETLDAAYDYY-RTTGRRVSIEYALIRDINDQGWRADL 347 Query: 302 LIKIL--KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 L K L +G +N IP NP PG ++ S + F E ++ G + IR RG DI Sbjct: 348 LGKKLAQRGRGWVHVNPIPLNPTPGSKWTASRKGVEQNFVERLRAHGIPTTIRDTRGSDI 407 Query: 359 LAACGQLKSLS 369 ACGQL + Sbjct: 408 DGACGQLAAKE 418 >gi|315081237|gb|EFT53213.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL078PA1] Length = 405 Score = 362 bits (929), Expect = 5e-98, Method: Composition-based stats. Identities = 123/376 (32%), Positives = 189/376 (50%), Gaps = 35/376 (9%) Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69 I + EE +A+ G+P R QI ++ R D +D+ + R + + Sbjct: 44 IDLSIEERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWF 99 Query: 70 IIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCVSSQ 121 + V ++ SCD T K L R G +E+V + + R TLC+SSQ Sbjct: 100 PVLLTKVSQQ-SCDRGTTVKTLWRLH-----GGALVESVLMYYPATRHSAARATLCLSSQ 153 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC + C FC TG + RN++ EI+ QVL A L I +P ++ N Sbjct: 154 AGCGMACPFCATGQGGIQRNMSTAEIVSQVLAANRL---------IAAGEVPGASGRVHN 204 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238 IV MGMGEP+ N+ +V ++ + G+ S R +TLST G VP I + +E I V Sbjct: 205 IVFMGMGEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVT 264 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLHA ++LR+ L+P+NR++ ++ L+DA HY + R++ EY ++K IND Sbjct: 265 LAVSLHAPDDELRDELIPVNRRWKVDELLDAASHYAEKTKR-RVSIEYALMKDINDQADR 323 Query: 299 ALNLIKILKGIP----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 A L + ++ A +NLIP NP PG + S +D F E ++R +R R Sbjct: 324 AAVLARQIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTR 383 Query: 355 GLDILAACGQLKSLSK 370 G +I ACGQL ++ + Sbjct: 384 GSEIDGACGQLAAVGR 399 >gi|227484655|ref|ZP_03914971.1| Fe-S-cluster redox enzyme [Anaerococcus lactolyticus ATCC 51172] gi|227237375|gb|EEI87390.1| Fe-S-cluster redox enzyme [Anaerococcus lactolyticus ATCC 51172] Length = 340 Score = 362 bits (929), Expect = 5e-98, Method: Composition-based stats. Identities = 126/367 (34%), Positives = 197/367 (53%), Gaps = 30/367 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++ E+E + + + + R Q+++ I+V + DF M+D+ ++R L Sbjct: 2 ININDKTIYEIENLFKE----RSYQKFRAKQVFRAIHVNRLNDFDEMTDLPLKMREDLKA 57 Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F +++ S D T+K+LL P + I +E VY+ K R T+C+SSQVGC Sbjct: 58 DFKFERIKVLKTFESKIDSTKKYLLELPDKNI-----VEAVYMDYKDRSTICISSQVGCR 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + CSFC + LVRN+TA E++ +V L L G ISNIV+M Sbjct: 113 MGCSFCASTKNGLVRNMTASELIEEVYLLERLNG------------------PISNIVIM 154 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEPL NFD++KK + I +D G + S R ITLSTSG P I + + + V LA+SLH Sbjct: 155 GIGEPLDNFDHIKKFIEIITDPSGRNLSHRSITLSTSGLSPRIKDLADTGLDVNLALSLH 214 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 + R + +P+ +KY ++ LIDA +Y + R++FEYV++ G+N+ D NL Sbjct: 215 YADDKKRAVYMPVAKKYSIKDLIDATDYYFDKTGR-RVSFEYVVIDGVNNLTEDVENLRD 273 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L G INLIP NP + + + F + + + G ++ IR G+DI A+CGQ Sbjct: 274 LLFGKNVHINLIPLNPIEEFNHKKPGARVLEDFKQRLIKRGLNATIRRSMGIDIDASCGQ 333 Query: 365 LKSLSKR 371 L++ R Sbjct: 334 LRNNYAR 340 >gi|288818052|ref|YP_003432399.1| radical SAM enzyme, Cfr family [Hydrogenobacter thermophilus TK-6] gi|288787451|dbj|BAI69198.1| radical SAM enzyme, Cfr family [Hydrogenobacter thermophilus TK-6] gi|308751653|gb|ADO45136.1| radical SAM enzyme, Cfr family [Hydrogenobacter thermophilus TK-6] Length = 360 Score = 362 bits (929), Expect = 6e-98, Method: Composition-based stats. Identities = 129/365 (35%), Positives = 207/365 (56%), Gaps = 32/365 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 ++ EEL+E+L K+G+P + R Q+ W+Y + DF M+DIS+E R LL +++ Sbjct: 4 ILRYNLEELKESLSKMGMP----KYRAVQVLGWVYKKFQTDFDAMTDISKEDRKLLKENY 59 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 + E+ DE + D + K+L + IE+V I E+ TLCVSSQ+GC++ C Sbjct: 60 RVHTLELTDEVHAED-SVKYLFKTLD-----GHTIESVLIRERDHLTLCVSSQIGCAVGC 113 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC T L RNL +EI+ Q+L + + + ++I N+V MGMG Sbjct: 114 KFCATAIDGLTRNLRTDEIIDQLLQIQKKI----------------LPQRIRNVVFMGMG 157 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI---GVMLAISLHA 245 EPL N++NV+K++ + G+ SKRRI++STSG + I R+ E+ V LA+SL+A Sbjct: 158 EPLANYENVRKAVEVMVSPWGIDLSKRRISVSTSGLIAQIKRMSEDPIMREVNLAVSLNA 217 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 S LR +++PI++ L L+ + YP RI EYV++KG+ND DAL+L ++ Sbjct: 218 PSQKLRELIMPISKTNNLSELMQVLKEYPYPKGR-RIMLEYVLIKGLNDKKEDALSLAQL 276 Query: 306 LKGIP--AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 + K+NLIP+NP P Y +++ F + + ++G S+ +R +G++I ACG Sbjct: 277 IGKYKNKFKVNLIPYNPDPELPYERPSIEEVYEFQKVLWQTGISTFVRLSKGINIFGACG 336 Query: 364 QLKSL 368 QL+ Sbjct: 337 QLRQR 341 >gi|255326866|ref|ZP_05367942.1| radical SAM enzyme, Cfr family [Rothia mucilaginosa ATCC 25296] gi|255296083|gb|EET75424.1| radical SAM enzyme, Cfr family [Rothia mucilaginosa ATCC 25296] Length = 404 Score = 362 bits (929), Expect = 6e-98, Method: Composition-based stats. Identities = 121/371 (32%), Positives = 183/371 (49%), Gaps = 19/371 (5%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + + E L ++G R SQ+ K + R + D M+D+ + R + Sbjct: 44 KHIADFDMAGRREFLKELGY----QSFRASQLSKHYFERLVTDPAEMTDLPAKDREQMVA 99 Query: 67 HFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 V + DG T K + R + IE+V + +R T+C+SSQ GC Sbjct: 100 QAMPQLLTPV-RTLEADGGDTLKVVHRLFDGAL-----IESVIMRYDNRVTMCISSQAGC 153 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG Q L RNL+ EI+ QV+ L G E+ EG + ++SNIV Sbjct: 154 GMNCPFCATGQQGLTRNLSTAEIVEQVVAGARYLKQMKGLEEAEGGSEDTRPLRVSNIVF 213 Query: 185 MGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAI 241 MGMGE L N+ ++ D GL S R +T+ST G VP I + E++ + LA+ Sbjct: 214 MGMGEALANYKATMGAVHRLIDPSPEGLGISARGLTMSTVGLVPGIRKFELEKLPITLAL 273 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++LR+ L+PIN+++ ++ +DA Y + RR++ EY +++ IND A Sbjct: 274 SLHAPDDELRDELIPINQRWKVDETLDAAYDYY-RTTGRRVSIEYALIRDINDQGWRADL 332 Query: 302 LIKIL--KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 L K L +G +N IP NP PG ++ S + F E ++ G + IR RG DI Sbjct: 333 LGKKLAQRGRGWVHVNPIPLNPTPGSKWTASRKGVEQNFVERLRAHGIPTTIRDTRGSDI 392 Query: 359 LAACGQLKSLS 369 ACGQL + Sbjct: 393 DGACGQLAAKE 403 >gi|315445031|ref|YP_004077910.1| 23S rRNA m(2)A-2503 methyltransferase [Mycobacterium sp. Spyr1] gi|315263334|gb|ADU00076.1| 23S rRNA m(2)A-2503 methyltransferase [Mycobacterium sp. Spyr1] Length = 365 Score = 362 bits (929), Expect = 6e-98, Method: Composition-based stats. Identities = 123/374 (32%), Positives = 181/374 (48%), Gaps = 30/374 (8%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 L + E A+ +G+P R Q+ + R I D M+D+ VR Sbjct: 14 RALPPRHFADLADTERAAAVADLGLPA----FRGKQLANQYFGRLISDPSQMTDLPAGVR 69 Query: 62 HLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 + E E G TRK L R + E+V + R T+C+SS Sbjct: 70 DQVAAALFPALLETAREIECDRGETRKVLWRAVDKTT-----FESVLMRYPDRNTVCISS 124 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC + C FC TG L RNL+ EIL QV A + L D G ++S Sbjct: 125 QAGCGMACPFCATGQGGLKRNLSTAEILEQVRFASAELRDRDGG-------------RLS 171 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIAS--DSMGLSFSKRRITLSTSGFVPNIARVGEE-IGV 237 NIV MGMGEPL N++ V ++ + G S R +T+ST G P I ++ +E + V Sbjct: 172 NIVFMGMGEPLANYNRVVAAVRRITASSPHGFGISARSVTVSTVGLAPAIRKLADEKLNV 231 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 LA+SLH ++LR+ LVP+N ++ ++ ++DA R+Y L+ R++ EY +++ +ND P Sbjct: 232 TLAVSLHTPDDELRDTLVPVNNRWKVDEVLDAARYYADLTGR-RVSIEYALIRDVNDQPW 290 Query: 298 DALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 A L + L G +NLIP NP PG E+ S + F ++ G S +R R Sbjct: 291 RADLLGRKLHAKLGPLVHVNLIPLNPTPGSEWDASPKPVEREFVRRVRAKGVSCTVRDTR 350 Query: 355 GLDILAACGQLKSL 368 G +I AACGQL + Sbjct: 351 GREIAAACGQLAAQ 364 >gi|269977915|ref|ZP_06184869.1| radical SAM enzyme, Cfr family [Mobiluncus mulieris 28-1] gi|269933881|gb|EEZ90461.1| radical SAM enzyme, Cfr family [Mobiluncus mulieris 28-1] Length = 401 Score = 362 bits (929), Expect = 7e-98, Method: Composition-based stats. Identities = 127/375 (33%), Positives = 182/375 (48%), Gaps = 25/375 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + E ++G+ R QI + + R D Q M+D++ R L Q Sbjct: 31 IHFADLEPAVRRETAAELGLKA----FRADQIARHYFGRFEADPQLMTDLNARDRELAAQ 86 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + +V + D T+K L R E+E+V + R TLCVSSQVGC + Sbjct: 87 LLPQLITPVVTKTADQDWTQKTLWRLFD-----GAEVESVLMRYPKRVTLCVSSQVGCGM 141 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG L RNL+A EIL QV + + ++SNIV MG Sbjct: 142 GCPFCATGQLGLARNLSAGEILEQVRFSAR---------AAATGALGGQETRLSNIVFMG 192 Query: 187 MGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MGEPL N+ + SL + G S R + +ST G VP I R+ E I V LA+SL Sbjct: 193 MGEPLSNYRALLTSLRTITAPVPQGFGISARNLVVSTVGMVPGIRRLASEGIPVTLAVSL 252 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA ++LR+ L+P+NR Y + L+DA Y ++ R++ EY +++ +ND P A L Sbjct: 253 HAPDDELRDALIPMNRHYKVGQLLDAAHEYFEITGR-RVSIEYALIRDMNDHPWRAQLLA 311 Query: 304 KILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L A +N IP NP PG + S + + F+ +++SG S+ +R RG DI Sbjct: 312 DELNKRGKTWAHVNPIPLNPTPGSIWTASLPRVMEEFTSILRQSGISTTLRDTRGSDIDG 371 Query: 361 ACGQLKSLSKRIPKV 375 ACGQL + SK K Sbjct: 372 ACGQLATASKNHKKT 386 >gi|304389793|ref|ZP_07371752.1| cfr family radical SAM enzyme [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326969|gb|EFL94208.1| cfr family radical SAM enzyme [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 390 Score = 361 bits (928), Expect = 7e-98, Method: Composition-based stats. Identities = 120/375 (32%), Positives = 185/375 (49%), Gaps = 26/375 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + ++ EA++ G+ R Q+ + + R D M+D++ R Sbjct: 36 QHFADFDPQQRREAVVAAGMRP----FRADQVARHYFGRFEADPAQMTDLAPADRERARD 91 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + +V + TRK L R ++E+V + R TLCVSSQVGC + Sbjct: 92 LLPELITPVVTQVADKGWTRKTLWRLFD-----GAQVESVLMRYPKRVTLCVSSQVGCGM 146 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG L RNL+A EIL QV LA D ++SN+V MG Sbjct: 147 GCPFCATGQLGLTRNLSAAEILEQVRLAARAAQD----------GELGSPARLSNLVFMG 196 Query: 187 MGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MGEPL N+ ++ ++ + G S R + +ST G VP I ++ +E + V LA+SL Sbjct: 197 MGEPLANYKSLLHTIRTLTAEVPQGFGISARNLVVSTVGLVPGIRKLTQEGLPVTLAVSL 256 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA ++LRN L+P+NR+Y ++ L+D Y + R++ EY +++ +ND P A L Sbjct: 257 HAPDDELRNELIPMNRRYQVDELLDTAYAYFQATGR-RVSIEYALIRDMNDHPWRAQLLA 315 Query: 304 KILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L A +N IP NP PG + S + + F E ++++G S+ +R RG DI Sbjct: 316 DKLNERGKTWAHVNPIPLNPTPGSIWDASLPRVMDEFMEILRQAGISTTLRDTRGSDIDG 375 Query: 361 ACGQLKSLSKRIPKV 375 ACGQL + +K+ P Sbjct: 376 ACGQLAAKAKQSPAA 390 >gi|227875938|ref|ZP_03994061.1| possible Fe-S-cluster redox protein [Mobiluncus mulieris ATCC 35243] gi|307700221|ref|ZP_07637262.1| 23S rRNA m2A2503 methyltransferase [Mobiluncus mulieris FB024-16] gi|227843470|gb|EEJ53656.1| possible Fe-S-cluster redox protein [Mobiluncus mulieris ATCC 35243] gi|307614603|gb|EFN93831.1| 23S rRNA m2A2503 methyltransferase [Mobiluncus mulieris FB024-16] Length = 401 Score = 361 bits (928), Expect = 8e-98, Method: Composition-based stats. Identities = 128/375 (34%), Positives = 182/375 (48%), Gaps = 25/375 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + E ++G+ R QI + + R D Q M+D++ R L Q Sbjct: 31 IHFADLEPAVRRETAAELGLKA----FRADQIARHYFGRFEADPQLMTDLNARDRELAAQ 86 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + +V + D T+K L R E+E+V + R TLCVSSQVGC + Sbjct: 87 LLPQLITPVVTKTADQDWTQKTLWRLFD-----GAEVESVLMRYPKRVTLCVSSQVGCGM 141 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG L RNL+A EIL QV + + ++SNIV MG Sbjct: 142 GCPFCATGQLGLARNLSAGEILEQVRFSAR---------AAATGALGGQETRLSNIVFMG 192 Query: 187 MGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MGEPL N+ + SL + G S R + +ST G VP I R+ E I V LA+SL Sbjct: 193 MGEPLSNYRALLTSLRTITAPVPQGFGISARNLVVSTVGMVPGIRRLASEGIPVTLAVSL 252 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA ++LR+ L+P+NR Y + L+DA Y + RR++ EY +++ +ND P A L Sbjct: 253 HAPDDELRDALIPMNRHYKVGQLLDAAHEYFE-TTGRRVSIEYALIRDMNDHPWRAQLLA 311 Query: 304 KILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L A +N IP NP PG + S + + F+ +++SG S+ +R RG DI Sbjct: 312 DELNKRGKTWAHVNPIPLNPTPGSIWTASLPRVMEEFTSILRQSGISTTLRDTRGSDIDG 371 Query: 361 ACGQLKSLSKRIPKV 375 ACGQL + SK K Sbjct: 372 ACGQLATASKNHKKT 386 >gi|256544909|ref|ZP_05472280.1| Cfr family radical SAM enzyme [Anaerococcus vaginalis ATCC 51170] gi|256399408|gb|EEU13014.1| Cfr family radical SAM enzyme [Anaerococcus vaginalis ATCC 51170] Length = 343 Score = 361 bits (928), Expect = 8e-98, Method: Composition-based stats. Identities = 121/371 (32%), Positives = 194/371 (52%), Gaps = 30/371 (8%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 + K+++ +ELEE +G + R Q+++ I+V I DF M+D+S+++R Sbjct: 1 MIMKQTINDKTIKELEEIFKNLGF----QKFRAKQVFRQIHVNKINDFSKMTDLSKDMRK 56 Query: 63 LLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L+Q +I+ E S D T+K+L I IE V++ +R T+C+SSQ Sbjct: 57 KLDQILYFPKIKILKEFKSNLDKTKKYLFELDDGNI-----IEAVFMEYDNRNTICISSQ 111 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC + C+FC + L R+L A EI+ ++ L D I+N Sbjct: 112 VGCKMGCNFCASTKNGLERSLLASEIIEEIYLLERENSD------------------INN 153 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLA 240 IV+MG+GEPL NF N++K + I +D G + S R IT+ST G V I ++ + + LA Sbjct: 154 IVVMGIGEPLDNFSNIEKFIKIITDDNGRNLSHRAITISTVGLVDKIYKLADLGYDINLA 213 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLH + R +P +KY ++ ++ AC +Y + RI++EYV++ G+N+ D Sbjct: 214 VSLHYAFDKKRMEYMPSAKKYKIKDIVKACDYYFEKTKR-RISYEYVVIDGVNNLKEDID 272 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L K+ KG INLIP NP +Y + + F + + G ++ IR G DI A Sbjct: 273 KLEKLFKGKNIHINLIPLNPIEEFKYSKTKSNVMDQFQKKLSTRGLNATIRRSMGSDIDA 332 Query: 361 ACGQLKSLSKR 371 +CGQL++ R Sbjct: 333 SCGQLRNNYAR 343 >gi|227495074|ref|ZP_03925390.1| possible Fe-S-cluster redox protein [Actinomyces coleocanis DSM 15436] gi|226831526|gb|EEH63909.1| possible Fe-S-cluster redox protein [Actinomyces coleocanis DSM 15436] Length = 403 Score = 361 bits (928), Expect = 8e-98, Method: Composition-based stats. Identities = 120/377 (31%), Positives = 179/377 (47%), Gaps = 28/377 (7%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 L + ++ L G+P R Q+ + + + D MSD+ + + + Sbjct: 47 HLADLDLSGRKQVLKDAGLPA----FRADQLSRHYFGNYVADPAQMSDLPKNMVDQVRDS 102 Query: 68 FSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + V + DG T K L +E+V + R TLC+SSQ GC Sbjct: 103 LMPTLVKPV-RTLEADGGLTIKHLWELFD-----GSRVESVLMRYPQRTTLCISSQAGCG 156 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG L RNL+ EI+ QV LA D + ++SNIV M Sbjct: 157 MACPFCATGQMGLTRNLSTAEIVEQVRLAAKACEDGD---------LEGGPTRLSNIVFM 207 Query: 186 GMGEPLCNFDNVKKSLSIAS--DSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAIS 242 GMGEPL N+ + ++L G S R IT+ST G VP I ++ + V LAIS Sbjct: 208 GMGEPLANYKAIVETLDRLIKESPEGFGLSARNITVSTVGLVPAIDKLAKLGHPVTLAIS 267 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA ++LR+ L+PIN ++ + L+DA R Y ++ RR++ EY +++ +ND A L Sbjct: 268 LHAPDDELRDELIPINSRWKVGELLDAARRYF-VATGRRVSIEYALIRDMNDHAWRAQLL 326 Query: 303 IKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L A +N IP NP PG + S +K F E ++++G S+ IR RG DI Sbjct: 327 ADELNKRGHGWAHVNPIPLNPTPGSIWTASTKKAQQEFVEILRKNGISTTIRDTRGSDID 386 Query: 360 AACGQLKSLSKRIPKVP 376 ACGQL + + + Sbjct: 387 GACGQLATTVAKEEEAK 403 >gi|169831742|ref|YP_001717724.1| radical SAM protein [Candidatus Desulforudis audaxviator MP104C] gi|205829744|sp|B1I501|RLMN_DESAP RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|169638586|gb|ACA60092.1| radical SAM enzyme, Cfr family [Candidatus Desulforudis audaxviator MP104C] Length = 318 Score = 361 bits (928), Expect = 8e-98, Method: Composition-based stats. Identities = 123/335 (36%), Positives = 181/335 (54%), Gaps = 25/335 (7%) Query: 38 IWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARC 96 + +W++ +G M+++ R L + E++D ++S G T K+LL Sbjct: 1 MAEWVFKQGALSLAEMTNLPAGFRKRLAGEAVVGRLEVLDSRVSAAGDTVKYLL-----G 55 Query: 97 IGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARS 156 + +ETV + T+CVSSQVGC + C FC + +RNL + E+ QVL R Sbjct: 56 LDDGHAVETVLMRHDYGRTVCVSSQVGCRMACRFCASALGGWIRNLRSGELYEQVLAVRR 115 Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216 G+ ++++V+MGMGEPL N++N K ++ + GL S+RR Sbjct: 116 ASGE-----------------PVTHVVLMGMGEPLDNYENTLKFVANVTAPYGLRLSQRR 158 Query: 217 ITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275 ITLST G VP I ++ E + + LAISLHA +N LR+ LVP+NRKYPLE LI AC Y Sbjct: 159 ITLSTCGLVPEIQKLARERLALTLAISLHAPNNALRDTLVPVNRKYPLEQLIPACAEYAR 218 Query: 276 LSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIV 335 + R++FEY++L G+NDSP A L +L G+ +NLIP NP P Y + + Sbjct: 219 RTGR-RVSFEYILLGGVNDSPELARELSDLLTGLLGHVNLIPANPVPESGYRAPSPEAVR 277 Query: 336 TFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 TF ++ G +R G DI AACGQL+ + Sbjct: 278 TFRRVLEEGGVPVSLRRELGADIGAACGQLRRRHR 312 >gi|229820988|ref|YP_002882514.1| radical SAM enzyme, Cfr family [Beutenbergia cavernae DSM 12333] gi|229566901|gb|ACQ80752.1| radical SAM enzyme, Cfr family [Beutenbergia cavernae DSM 12333] Length = 383 Score = 361 bits (928), Expect = 9e-98, Method: Composition-based stats. Identities = 123/371 (33%), Positives = 182/371 (49%), Gaps = 32/371 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + E +A+ +G R Q+ + + RD MSD+ R L Sbjct: 33 VHLADLAPAERVDAVRGVG----EAAFRADQLSRHYFTHLTRDADAMSDLPAASREDL-- 86 Query: 67 HFSIIYPEIVD--EKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + + P++V + DG T K L ++E+V + + R TLCVSSQ Sbjct: 87 -VAALLPQLVSPVRTMEADGGATVKTLWALFDDA-----KVESVLMRYRDRTTLCVSSQA 140 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RNL+ EI+ QV LA + +P ++SN+ Sbjct: 141 GCGMACPFCATGQLGLTRNLSTAEIVEQVRLAAAACR---------AGDLPGGPTRLSNV 191 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239 V MGMGEPL N+ V ++ + GL S R +T+ST G VP I ++ E I V L Sbjct: 192 VFMGMGEPLANYRAVIGAVRRMVEPAPSGLGMSARNVTVSTVGLVPAIDKLAAEGIPVTL 251 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA ++LR+ LVPIN ++ + +DA R Y +++ R++ EY +++ +ND A Sbjct: 252 AVSLHAPDDELRSELVPINTRWSVGEALDAARRYFDITHR-RVSIEYALIRDVNDHGWRA 310 Query: 300 LNLIKIL--KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L K L +G +N IP NP PG + SD F ++ +G + IR RG Sbjct: 311 DLLAKELVARGRGWVHVNPIPLNPTPGSRWTASDPGVEAEFVARLRHAGIPTTIRDTRGS 370 Query: 357 DILAACGQLKS 367 DI ACGQL + Sbjct: 371 DIDGACGQLAA 381 >gi|298377278|ref|ZP_06987231.1| radical SAM enzyme, Cfr family [Bacteroides sp. 3_1_19] gi|298265692|gb|EFI07352.1| radical SAM enzyme, Cfr family [Bacteroides sp. 3_1_19] Length = 334 Score = 361 bits (927), Expect = 9e-98, Method: Composition-based stats. Identities = 127/358 (35%), Positives = 176/358 (49%), Gaps = 29/358 (8%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 M EEL+ ++ +P Q+ WIY + I M++I+ R LL F I Sbjct: 1 MTLEELKGVASEVSLPA----YAAKQMADWIYKKKITRISEMTNIAVAKRALLEDSFEIG 56 Query: 72 YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131 + + S DGT K+L G +E+VYIP R TLCVSSQVGC + C FC Sbjct: 57 VYPPSEYQKSKDGTIKYLY-----AAGPGRFVESVYIPTDDRATLCVSSQVGCKMNCLFC 111 Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191 TG Q NLTA +IL Q+ ++NIV MGMGEPL Sbjct: 112 MTGKQGFTANLTANQILNQI-------------------QSLPENDSLTNIVFMGMGEPL 152 Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLR 251 N D + K L I + G ++S +RIT+ST G + R EE LA+SLH+ R Sbjct: 153 DNVDELFKVLEILTAPYGYAWSPKRITVSTIGVTKGLKRFLEESECHLAVSLHSPYPMER 212 Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311 L+P+ + +P +ID + Y S+ RR++FEY++ K +NDS + A L +L GIP Sbjct: 213 LSLMPVEKAFPAREVIDLIKQY-DFSHQRRVSFEYIVFKNLNDSLKHAEALSCLLGGIPC 271 Query: 312 KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369 ++NLI F+ P SD + F + + G IR RG DI AACG L + Sbjct: 272 RVNLIRFHAIPNVSLETSDIAKMEAFRDFLNAKGVVCTIRASRGEDIFAACGMLSTAK 329 >gi|298346468|ref|YP_003719155.1| putative Fe-S-cluster redox protein [Mobiluncus curtisii ATCC 43063] gi|298236529|gb|ADI67661.1| possible Fe-S-cluster redox protein [Mobiluncus curtisii ATCC 43063] Length = 390 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 120/375 (32%), Positives = 184/375 (49%), Gaps = 26/375 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + ++ EA++ G+ R Q+ + + R D M+D+ R Sbjct: 36 QHFADFDPQQRREAVVAAGMRP----FRADQVARHYFGRFEADPAQMTDLGPADRERARD 91 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + +V + TRK L R ++E+V + R TLCVSSQVGC + Sbjct: 92 LLPELITPVVTQVADKGWTRKTLWRLFD-----GAQVESVLMRYPKRVTLCVSSQVGCGM 146 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG L RNL+A EIL QV LA D ++SN+V MG Sbjct: 147 GCPFCATGQLGLTRNLSAAEILEQVRLAAKAAQD----------GELGSPSRLSNLVFMG 196 Query: 187 MGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MGEPL N+ ++ ++ + G S R + +ST G VP I ++ +E + V LA+SL Sbjct: 197 MGEPLANYKSLLHTIRTLTAEVPQGFGISARNLVVSTVGLVPGIRKLTQEGLPVTLAVSL 256 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA ++LRN L+P+NR+Y ++ L+D Y + R++ EY +++ +ND P A L Sbjct: 257 HAPDDELRNELIPMNRRYQVDELLDTAYAYFQATGR-RVSIEYALIRDMNDHPWRAQLLA 315 Query: 304 KILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L A +N IP NP PG + S + + F E ++++G S+ +R RG DI Sbjct: 316 DKLNERGKTWAHVNPIPLNPTPGSIWDASLPRVMDEFMEILRQAGISTTLRDTRGSDIDG 375 Query: 361 ACGQLKSLSKRIPKV 375 ACGQL + +K+ P Sbjct: 376 ACGQLAAKAKQSPAA 390 >gi|315657100|ref|ZP_07909984.1| cfr family radical SAM enzyme [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492203|gb|EFU81810.1| cfr family radical SAM enzyme [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 390 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 120/375 (32%), Positives = 184/375 (49%), Gaps = 26/375 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + ++ EA++ G+ R Q+ + + R D M+D+ R Sbjct: 36 QHFADFDPQQRREAVVAAGMRP----FRADQVARHYFGRFEADPAQMTDLGPADRERARD 91 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + +V + TRK L R ++E+V + R TLCVSSQVGC + Sbjct: 92 LLPELITPVVTQVADKGWTRKTLWRLFD-----GAQVESVLMRYPKRVTLCVSSQVGCGM 146 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG L RNL+A EIL QV LA D ++SN+V MG Sbjct: 147 GCPFCATGQLGLTRNLSAAEILEQVRLAARAAQD----------GELGSPARLSNLVFMG 196 Query: 187 MGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MGEPL N+ ++ ++ + G S R + +ST G VP I ++ +E + V LA+SL Sbjct: 197 MGEPLANYKSLLHTIRTLTAEVPQGFGISARNLVVSTVGLVPGIRKLTQEGLPVTLAVSL 256 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA ++LRN L+P+NR+Y ++ L+D Y + R++ EY +++ +ND P A L Sbjct: 257 HAPDDELRNELIPMNRRYQVDELLDTAYAYFQATGR-RVSIEYALIRDMNDHPWRAQLLA 315 Query: 304 KILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L A +N IP NP PG + S + + F E ++++G S+ +R RG DI Sbjct: 316 DKLNERGKTWAHVNPIPLNPTPGSIWDASLPRVMDEFMEILRQAGISTTLRDTRGSDIDG 375 Query: 361 ACGQLKSLSKRIPKV 375 ACGQL + +K+ P Sbjct: 376 ACGQLAAKAKQSPAA 390 >gi|297626635|ref|YP_003688398.1| hypothetical protein PFREUD_14730 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922400|emb|CBL56972.1| Hypothetical protein PFREUD_14730 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 375 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 115/369 (31%), Positives = 178/369 (48%), Gaps = 27/369 (7%) Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69 + + +E EA+ +G+P R QI + R D + +D+ VR + Sbjct: 24 MDLGVDERIEAVRALGLPA----FRAKQISTHWFSRCEHDPRQWTDLPAAVRDEVADKLF 79 Query: 70 IIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 V + G T K + + +E+V + R T+C+SS+ GC++ C Sbjct: 80 PQLLTPVQALSADHGRTVKVAWQLHDGSL-----VESVLMRYPHRTTICISSEAGCAMNC 134 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG L RNL+ EI+ QVL G + IP +I+N+V MGMG Sbjct: 135 PFCATGQGGLQRNLSTAEIVGQVL---------DGARRLANGEIPGGPGRINNVVFMGMG 185 Query: 189 EPLCNFDNVKKSLSIAS--DSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 EP+ NF V ++ + + GL S R +T+ST G VP I + + I LAISLHA Sbjct: 186 EPMANFKAVLGAVREITRPEPDGLGISARGVTVSTIGMVPRINELSDTGIPATLAISLHA 245 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++LR+ LVP+N+ + ++ ++DA Y + R++ EY ++K IND A L + Sbjct: 246 PDDELRDELVPLNKHFNIDAVLDAAWAYAENTKR-RVSIEYALIKDINDQSWRADLLARR 304 Query: 306 LKGIP----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 LK +NLIP NP PG ++ S ++D F ++ +R RG +I A Sbjct: 305 LKERGDWGWCHVNLIPLNPTPGSKWTASRREDEEAFVRHLENHHVPVTVRDTRGREIDGA 364 Query: 362 CGQLKSLSK 370 CGQL + K Sbjct: 365 CGQLAAAVK 373 >gi|18405124|ref|NP_565909.1| radical SAM domain-containing protein [Arabidopsis thaliana] gi|15809964|gb|AAL06909.1| At2g39670/F17A14.4 [Arabidopsis thaliana] gi|17065474|gb|AAL32891.1| Unknown protein [Arabidopsis thaliana] gi|20197047|gb|AAB97122.2| expressed protein [Arabidopsis thaliana] gi|23197704|gb|AAN15379.1| Unknown protein [Arabidopsis thaliana] gi|330254610|gb|AEC09704.1| radical SAM domain-containing protein [Arabidopsis thaliana] Length = 428 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 124/385 (32%), Positives = 187/385 (48%), Gaps = 39/385 (10%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH- 67 LIGM EL+E + +G R Q+ IY R + + S++ R L Sbjct: 64 LIGMSEPELQELAINLG----QEGYRGKQLHHLIYKRKVNKVEDFSNLPLTFRKGLVDGG 119 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCVSSQ 121 F + I + DGT K + + IETV IP + R T CVSSQ Sbjct: 120 FKVGRSPIYQTVTATDGTIK-----LLLKLEDNLLIETVGIPVQDDEKGITRLTACVSSQ 174 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC L CSFC TG RNL EI+ QVL + +++N Sbjct: 175 VGCPLRCSFCATGKGGFSRNLQRHEIIEQVLAIEDVFKH-----------------RVTN 217 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLA 240 +V MGMGEP+ N +V + + + +R IT+ST G I ++ ++ LA Sbjct: 218 VVFMGMGEPMLNLKSVLDAHRCLNKD--IEIGQRMITISTVGVPNTIKKLASHKLQSTLA 275 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA + LR +VP + YPLE ++ CR Y +N R++FEY +L G+ND A+ Sbjct: 276 VSLHAPNQSLREKIVPSAKAYPLEAIMKDCRDYFQETNR-RVSFEYALLAGVNDQVEHAV 334 Query: 301 NLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 L ++L+ G +NLIP+NP G EY +K ++ F+ ++ ++ +R RGLD Sbjct: 335 ELAELLREWGKTYHVNLIPYNPIEGSEYQRPYKKAVLAFAAALESRKITASVRQTRGLDA 394 Query: 359 LAACGQLKSLSKRIPKVPRQEMQIT 383 AACGQL++ ++ P + + Q + Sbjct: 395 SAACGQLRNKFQKSPLLTETDSQES 419 >gi|32266677|ref|NP_860709.1| ribosomal RNA large subunit methyltransferase N [Helicobacter hepaticus ATCC 51449] gi|81665730|sp|Q7VGY9|RLMN_HELHP RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|32262728|gb|AAP77775.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 369 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 136/387 (35%), Positives = 208/387 (53%), Gaps = 45/387 (11%) Query: 1 MNF---LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDIS 57 MN ++ SL G EL+ L R QI+ W+Y R D M +IS Sbjct: 1 MNIDFPFQQPSLYGYKLNELKSIL--------SPAFRAKQIYHWLYHRYENDAMRMDNIS 52 Query: 58 QEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR---- 113 + +++ + +HF++ + + S DG++K+L E+V I + + Sbjct: 53 KTMQNYIREHFALSQIYPIRVEHSIDGSKKYLFETYD-----GHCFESVLIQMRDKKLGH 107 Query: 114 ---------GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC 164 T+C+SSQ+GC + C+FC+T VRNL A EI+ QV++ + P Sbjct: 108 KGEVVESEKWTMCLSSQIGCKVGCAFCFTAKGGFVRNLHASEIVEQVVIMKKDNQMAP-- 165 Query: 165 EDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF 224 K NIV MGMGEPL N +NV +++ I S+S GLS S RR T+STSG Sbjct: 166 ------------HKRVNIVYMGMGEPLDNIENVTRAIEILSESEGLSISARRQTISTSGI 213 Query: 225 VPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283 P I ++G+ +GV LAISLHAV + LR+ L+P+N+ Y + ++ R +P + +++ Sbjct: 214 APKIKQLGKLNLGVQLAISLHAVDDKLRSQLIPMNKAYNISDILTEVRAFP-IDTRKKVM 272 Query: 284 FEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR 343 FEY+M+KG+ND + A L+++L GI AK+NLI FNP G + + D+ F++ + + Sbjct: 273 FEYLMIKGVNDDLKSAKKLLQLLNGIKAKVNLILFNPHEGSTFKRPEINDVRAFADFLIK 332 Query: 344 SGYSSPIRTPRGLDILAACGQLKSLSK 370 G IR RG+DI AACGQL+ K Sbjct: 333 RGLLCTIRESRGIDISAACGQLREKVK 359 >gi|224538713|ref|ZP_03679252.1| hypothetical protein BACCELL_03607 [Bacteroides cellulosilyticus DSM 14838] gi|224519681|gb|EEF88786.1| hypothetical protein BACCELL_03607 [Bacteroides cellulosilyticus DSM 14838] Length = 346 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 126/359 (35%), Positives = 186/359 (51%), Gaps = 29/359 (8%) Query: 18 EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD 77 +E + ++G+P QI W+Y + + M+++S + R LL + + V+ Sbjct: 15 QEVVKRLGMPG----FSAKQIASWLYDKKVNSIDDMTNLSLKHRDLLKDVYEVGAEAPVE 70 Query: 78 EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137 S DGT K+L R G +E VYIP++ R TLCVSSQVGC + C FC TG Q Sbjct: 71 AMRSTDGTVKYLYR-----AGDKNFVEAVYIPDEDRATLCVSSQVGCKMNCKFCMTGKQG 125 Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197 NLTA +I+ Q+ K++N+VMMGMGEPL N D V Sbjct: 126 FSANLTANQIINQI-------------------NSLPERDKLTNVVMMGMGEPLDNLDEV 166 Query: 198 KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPI 257 K+L I + S G +S +RITLST G R EE LA+SLH+ R L+P Sbjct: 167 LKALEIMTASYGYGWSPKRITLSTVGLRKGFQRFIEESECHLAVSLHSPVALQRRELMPA 226 Query: 258 NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIP 317 + + + ++D ++Y S RR++FEY++ KG+NDS A L+K+L+G+ +INLI Sbjct: 227 EKSFSITEMVDLLKNY-DFSKQRRLSFEYIVFKGVNDSLLYAKELLKLLRGLDCRINLIR 285 Query: 318 FNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVP 376 F+ PG + +D + + + + G + IR RG DI AACG L + + K Sbjct: 286 FHAIPGVDLEGADMETMTKLRDYLTSHGLFTTIRASRGEDIFAACGMLSTAKQEENKQE 344 >gi|313836797|gb|EFS74511.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL037PA2] gi|314929795|gb|EFS93626.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL044PA1] gi|314972224|gb|EFT16321.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL037PA3] gi|328907651|gb|EGG27415.1| cfr family radical SAM enzyme [Propionibacterium sp. P08] Length = 414 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 124/376 (32%), Positives = 187/376 (49%), Gaps = 35/376 (9%) Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69 I + EE +A+ + +P R QI ++ R D +D+ + R + + Sbjct: 53 IDLSVEERAQAVKDLSLPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWF 108 Query: 70 IIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCVSSQ 121 V + SCD T K L R G +E+V + + R TLC+SSQ Sbjct: 109 PALLTEVSRQ-SCDRGTTVKTLWRLH-----GGALVESVLMYYPATRHSAARTTLCLSSQ 162 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC + C FC TG + RN++ EI+ QVL A L I IP ++ N Sbjct: 163 AGCGMACPFCATGQGGIQRNMSTAEIVSQVLAANRL---------IAAGEIPGASGRVHN 213 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238 IV MGMGEP+ N+ +V + + G+ S R +T+ST G VP I + EE I V Sbjct: 214 IVFMGMGEPMANYRSVLTVIRTLTADGPDGMGMSARALTVSTVGLVPRIKALTEERIPVT 273 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLHA ++LR+ L+P+NR++ ++ L+DA HY S R++ EY ++K IND Sbjct: 274 LAVSLHAPDDELRDELIPVNRRWKVDELLDAAWHYAEKSKR-RVSIEYALMKDINDQADR 332 Query: 299 ALNLIKILKGIP----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 A L + ++ A +NLIP NP PG + S ++D F E ++R +R R Sbjct: 333 AAVLARQIRRRGDWTWAHVNLIPLNPTPGSRWTASRREDQDAFVETLERWKIPVTVRDTR 392 Query: 355 GLDILAACGQLKSLSK 370 G +I ACGQL ++ + Sbjct: 393 GSEIDGACGQLAAVGR 408 >gi|313816750|gb|EFS54464.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL059PA1] gi|315099197|gb|EFT71173.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL059PA2] Length = 405 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 124/376 (32%), Positives = 189/376 (50%), Gaps = 35/376 (9%) Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69 I + EE +A+ G+P R QI ++ R D +D+ + R + + Sbjct: 44 IDLSIEERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWF 99 Query: 70 IIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCVSSQ 121 + V ++ SCD T K L R G +E+V + + R TLC+SSQ Sbjct: 100 PVLLTKVSQQ-SCDRGTTVKTLWRLH-----GGALVESVLMYYPATRHSAARATLCLSSQ 153 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC + C FC TG + RN++ EI+ QVL A L I +P ++ N Sbjct: 154 AGCGMACPFCATGQGGIQRNMSTAEIVSQVLAANRL---------IAAGEVPGASGRVHN 204 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238 IV MGMGEP+ N+ +V ++ + G+ S R +TLST G VP I V +E I V Sbjct: 205 IVFMGMGEPMANYRSVLTAIRTLTADGPDGVGMSARALTLSTVGLVPRIKAVTQEGIPVT 264 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLHA ++LR+ L+P+NR++ ++ L+DA HY + R++ EY ++K IND Sbjct: 265 LAVSLHAPDDELRDELIPVNRRWKVDELLDAAWHYAEKTKR-RVSIEYALMKDINDQADR 323 Query: 299 ALNLIKILKGIP----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 A L + ++ A +NLIP NP PG + S +D F E ++R +R R Sbjct: 324 AAVLARQIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTR 383 Query: 355 GLDILAACGQLKSLSK 370 G +I ACGQL ++ + Sbjct: 384 GSEIDGACGQLAAVGR 399 >gi|306819217|ref|ZP_07452928.1| cfr family radical SAM enzyme [Mobiluncus mulieris ATCC 35239] gi|304647999|gb|EFM45313.1| cfr family radical SAM enzyme [Mobiluncus mulieris ATCC 35239] Length = 401 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 128/375 (34%), Positives = 182/375 (48%), Gaps = 25/375 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + E ++G+ R QI + + R D Q M+D++ R L Q Sbjct: 31 IHFADLEPAVRRETAAELGLKA----FRADQIARHYFGRFEADPQLMTDLNARDRELAAQ 86 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + +V + D T+K L R E+E+V + R TLCVSSQVGC + Sbjct: 87 LLPQLITPVVTKTADQDWTQKTLWRLFD-----GAEVESVLMRYPKRVTLCVSSQVGCGM 141 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG L RNL+A EIL QV + + ++SNIV MG Sbjct: 142 GCPFCATGQLGLARNLSAGEILEQVRFSAR---------AAATGALGGQETRLSNIVFMG 192 Query: 187 MGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MGEPL N+ + SL + G S R + +ST G VP I R+ E I V LA+SL Sbjct: 193 MGEPLSNYRALLTSLRTITAPVPQGFGISARNLVVSTVGMVPGILRLASEGIPVTLAVSL 252 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA ++LR+ L+P+NR Y + L+DA Y + RR++ EY +++ +ND P A L Sbjct: 253 HAPDDELRDALIPMNRHYKVGQLLDAAHEYFE-TTGRRVSIEYALIRDMNDHPWRAQLLA 311 Query: 304 KILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L A +N IP NP PG + S + + F+ +++SG S+ +R RG DI Sbjct: 312 DELNKRGKTWAHVNPIPLNPTPGSIWTASLPRVMEEFTSILRQSGISTTLRDTRGSDIDG 371 Query: 361 ACGQLKSLSKRIPKV 375 ACGQL + SK K Sbjct: 372 ACGQLATASKNHKKT 386 >gi|160947211|ref|ZP_02094378.1| hypothetical protein PEPMIC_01144 [Parvimonas micra ATCC 33270] gi|158446345|gb|EDP23340.1| hypothetical protein PEPMIC_01144 [Parvimonas micra ATCC 33270] Length = 348 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 115/364 (31%), Positives = 190/364 (52%), Gaps = 29/364 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK + EELE+ L +G + R Q +++++ + + + + + + L Sbjct: 4 KKIEFNSLKIEELEDLFLSLG----EKKFRAEQFFRFMHQKKNFEIENCKQLPKVLIEKL 59 Query: 65 NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + I I + S D T+K+L++ I IETV++ S T+C+SSQVG Sbjct: 60 KEIGYINTSSIYTKYESKLDNTKKYLIKLFDNRI-----IETVFMDYGSYCTVCISSQVG 114 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C+FC + + RNLT+ E+L Q+ L + + I+N+V Sbjct: 115 CRMGCTFCASTKENFKRNLTSGEMLNQIYLIEN-----------------DLNLTINNVV 157 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG+GEPL N++NV L I + G + S R IT+ST G V NI ++ +E + + L IS Sbjct: 158 IMGIGEPLDNYNNVIGFLKIINSEKGKNLSLRNITISTCGLVHNIYKLADEKLPITLTIS 217 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LH R ++PI+ + ++ ++ AC++Y ++ R++FEY ++KG NDS AL L Sbjct: 218 LHNPFQKERREIMPISDNFSIDEILKACKYYFDKTSR-RVSFEYTIIKGQNDSREHALEL 276 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ILKG+ IN+IP N + + K I +F ++ G ++ IR +G DI AC Sbjct: 277 KNILKGLNCHINIIPLNSIKEFDGVAPSTKYIYSFKSMLENYGINATIRKKQGDDINGAC 336 Query: 363 GQLK 366 GQL+ Sbjct: 337 GQLR 340 >gi|296129336|ref|YP_003636586.1| radical SAM enzyme, Cfr family [Cellulomonas flavigena DSM 20109] gi|296021151|gb|ADG74387.1| radical SAM enzyme, Cfr family [Cellulomonas flavigena DSM 20109] Length = 375 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 118/370 (31%), Positives = 174/370 (47%), Gaps = 26/370 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + + EE A+ +G R Q+ + D M+D+ + R L Sbjct: 23 RHFVDLTPEERVAAVTALG----EKPFRAKQLATHYFTHLTSDADAMTDLPKASRDTLVA 78 Query: 67 HFSIIYPEIVDEKISCDGTR-KWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + GT K L ++E+V + +R TLCVSSQ GC Sbjct: 79 DLFPELLTTSRTLTADHGTTVKTLYHLFD-----GAKVESVLMRYANRTTLCVSSQAGCG 133 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG L+RNL+ EI+ QV A L D +P ++SN+V M Sbjct: 134 LACSFCATGKMGLLRNLSTAEIVEQVRQAARALADGD---------VPGGPTRLSNVVFM 184 Query: 186 GMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242 GMGEPL N+ V ++ GL S R +T+ST G VP + R+ E I V LA+S Sbjct: 185 GMGEPLANYKAVMATVRRLVAPAPDGLGMSARNVTVSTVGLVPAMDRLAGEGIPVTLALS 244 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA ++LR+ LVP+N ++ ++ +D+ R Y ++ R++ EY +++ +ND A L Sbjct: 245 LHAPDDELRSELVPVNTRWSVDEALDSARRYFDVTGR-RVSIEYALIRDVNDHAWRADLL 303 Query: 303 IKIL--KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 + L +G N IP NP PG + SD + F ++ G + IR RG DI Sbjct: 304 GEKLVARGTGWVHCNPIPLNPTPGSRWTASDPQVEAEFVARLRAHGVPTTIRDTRGSDID 363 Query: 360 AACGQLKSLS 369 ACGQL + Sbjct: 364 GACGQLAAEE 373 >gi|189467727|ref|ZP_03016512.1| hypothetical protein BACINT_04119 [Bacteroides intestinalis DSM 17393] gi|189435991|gb|EDV04976.1| hypothetical protein BACINT_04119 [Bacteroides intestinalis DSM 17393] Length = 346 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 126/359 (35%), Positives = 186/359 (51%), Gaps = 29/359 (8%) Query: 18 EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD 77 +EA+ ++G+P QI W+Y + + M+++S + R LL + + V+ Sbjct: 15 QEAVKRLGMPG----FAAKQIASWLYDKKVNSIDDMTNLSLKHRDLLKDVYEVGADAPVE 70 Query: 78 EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137 S DGT K+L R G +E VYIP++ R TLCVSSQVGC + C FC TG Q Sbjct: 71 AMRSVDGTVKYLYR-----AGDKHFVEAVYIPDEDRATLCVSSQVGCKMNCKFCMTGKQG 125 Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197 NLTA +I+ Q+ K++N+VMMGMGEPL N D V Sbjct: 126 FTANLTANQIINQI-------------------NSLPERDKLTNVVMMGMGEPLDNLDEV 166 Query: 198 KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPI 257 K+L I + S G +S +RITLST G R E LA+SLH+ R L+P Sbjct: 167 LKALEIMTASYGYGWSPKRITLSTVGLRKGFQRFIEGSECHLAVSLHSPVALQRRELMPA 226 Query: 258 NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIP 317 + + + ++D ++Y S RR++FEY++ KG+NDS A L+K+L+G+ +INLI Sbjct: 227 EKAFSITEMVDLLKNY-DFSKQRRLSFEYIVFKGVNDSLLYAKELLKLLRGLDCRINLIR 285 Query: 318 FNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVP 376 F+ PG + +D + + + + G + IR RG DI AACG L + + K Sbjct: 286 FHAIPGVDLEGADMETMTKLRDYLTSHGLFTTIRASRGEDIFAACGMLSTAKQEENKQE 344 >gi|71900902|ref|ZP_00683017.1| Conserved hypothetical protein 48 [Xylella fastidiosa Ann-1] gi|71729314|gb|EAO31430.1| Conserved hypothetical protein 48 [Xylella fastidiosa Ann-1] Length = 309 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 137/308 (44%), Positives = 181/308 (58%), Gaps = 25/308 (8%) Query: 80 ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV 139 S DGT KWLL IETVYIP+K RGTLCVSSQ+GC L C+FC T TQ Sbjct: 1 HSADGTHKWLLAM---GTDRKNAIETVYIPDKGRGTLCVSSQIGCGLNCTFCSTATQGFN 57 Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199 RNLT EI+ QV +A LG+ P R+++N+VMMGMGEPL NFDNV + Sbjct: 58 RNLTTAEIIGQVWVAARHLGNVPHQR-----------RRLTNVVMMGMGEPLMNFDNVVR 106 Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINR 259 ++S+ D +G S +R+TLSTSG VP I R+ E V LA+SLHA ++ LR LVP+N+ Sbjct: 107 AMSVMRDDLGYGLSNKRVTLSTSGLVPMIDRLSTESDVSLAVSLHAPNDKLREQLVPLNK 166 Query: 260 KYPLEMLIDACRHYPGL-SNARRITFEYVMLKGINDSPRDALNLIKILKGIPA------- 311 KYP+ L+ +C Y + +TFEY ++KG+ND A L K+++ Sbjct: 167 KYPIVELMASCERYLSVNRKRDSVTFEYTLMKGVNDKQEHAHELAKLMRQFDCAMQVKGA 226 Query: 312 -KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 K+NLIPFNP+PG Y S + DI F + + + + +R RG DI AACGQLK Sbjct: 227 AKVNLIPFNPFPGTCYERSTEVDIRAFQKILLDAQILAMVRRTRGDDIDAACGQLKGQV- 285 Query: 371 RIPKVPRQ 378 + + RQ Sbjct: 286 -VDRTRRQ 292 >gi|313813381|gb|EFS51095.1| radical SAM enzyme, Cfr family [Propionibacterium acnes HL025PA1] Length = 405 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 123/376 (32%), Positives = 188/376 (50%), Gaps = 35/376 (9%) Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69 I + EE +A+ G+P R QI ++ R D +D+ + R + + Sbjct: 44 IDLSIEERVQAVKDFGVPA----FRARQISAHVFERWEVDPTQWTDLPKAARQEIADAWF 99 Query: 70 IIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCVSSQ 121 + V ++ SCD T K L R G +E+V + + R TLC+SSQ Sbjct: 100 PVLLTKVSQQ-SCDRGTTVKTLWRLH-----GGALVESVLMYYPATRHSAARATLCLSSQ 153 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC + C FC TG + RN++ EI+ QVL A L I +P ++ N Sbjct: 154 AGCGMACPFCATGQGGIQRNMSTAEIVSQVLAANRL---------IAAGEVPGASGRVHN 204 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238 IV MGMGEP+ N+ +V + + G+ S R +TLST G VP I + +E I V Sbjct: 205 IVFMGMGEPMANYRSVLTVIRTLTADGPDGVGMSARALTLSTVGLVPRIKALTQEGIPVT 264 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLHA ++LR+ L+P+NR++ ++ L+DA HY + R++ EY ++K IND Sbjct: 265 LAVSLHAPDDELRDELIPVNRRWKVDELLDAAWHYAEKTKR-RVSIEYALMKDINDQADR 323 Query: 299 ALNLIKILKGIP----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 A L + ++ A +NLIP NP PG + S +D F E ++R +R R Sbjct: 324 AAVLARQIRRRGDWTWAHVNLIPLNPTPGSRWTASRPEDQDAFVETLERWKIPVTVRDTR 383 Query: 355 GLDILAACGQLKSLSK 370 G +I ACGQL ++ + Sbjct: 384 GSEIDGACGQLAAVGR 399 >gi|269792997|ref|YP_003317901.1| radical SAM enzyme, Cfr family [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100632|gb|ACZ19619.1| radical SAM enzyme, Cfr family [Thermanaerovibrio acidaminovorans DSM 6589] Length = 462 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 130/384 (33%), Positives = 194/384 (50%), Gaps = 32/384 (8%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + K + + E+ + +G R R Q+ W Y R + +FQ MSD+S E+R+ Sbjct: 1 MSKMDALSLSYEDWVREMEALG----EKRFRADQVCGWFYRRHVFEFQLMSDLSLELRNR 56 Query: 64 LNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L+ F + P+++ + S DGT+K+L F +E+V I R T CVS+QV Sbjct: 57 LDGAFRVGLPKMLGMRASGRDGTKKFLFDF------DGSSVESVAIWHPGRITACVSTQV 110 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C FC TG RN+T E++ Q L + LG+ I N+ Sbjct: 111 GCPLGCPFCATGQSGFERNMTVGEMVGQFLAMEARLGE------------------IKNL 152 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 V MGMGEP+ N+ N+ ++ + R IT+STSG +P I + E +GV LA+ Sbjct: 153 VFMGMGEPMLNYHNLIGAIRNLNHPKMRGLGIRHITVSTSGIIPGILNLAREGLGVRLAV 212 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA +++LR+ LVPIN +YPL+ L A Y ++ RIT EY + +NDS A Sbjct: 213 SLHAPNDELRDQLVPINAQYPLKELKRALMEYQEIT-GDRITIEYSLFDQVNDSVPMARQ 271 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L + LKG+ A +NLIP + + S + F + + GY +R +G D+ A Sbjct: 272 LGEYLKGLSAFVNLIPGSCVGDQRFRPSPPFRVRAFGDLLTAMGYPVAMRQSKGSDVGGA 331 Query: 362 CGQL-KSLSKRIPKVPRQEMQITG 384 CGQL + +S I + Q Q G Sbjct: 332 CGQLRRQVSPGIQEASPQGGQRGG 355 >gi|315655038|ref|ZP_07907942.1| cfr family radical SAM enzyme [Mobiluncus curtisii ATCC 51333] gi|315490694|gb|EFU80315.1| cfr family radical SAM enzyme [Mobiluncus curtisii ATCC 51333] Length = 390 Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats. Identities = 120/375 (32%), Positives = 184/375 (49%), Gaps = 26/375 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + ++ EA++ G+ R Q+ + + R D M+D+ R Sbjct: 36 QHFADFDSQQRREAVVAAGMRP----FRADQVARHYFGRFEADPAQMTDLGPADRERARD 91 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + +V + TRK L R ++E+V + R TLCVSSQVGC + Sbjct: 92 LLPELITPVVTQVADKGWTRKTLWRLFD-----GAQVESVLMRYPKRVTLCVSSQVGCGM 146 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG L RNL+A EIL QV LA D ++SN+V MG Sbjct: 147 GCPFCATGQLGLTRNLSAAEILEQVRLAARAAQD----------GELGSPARLSNLVFMG 196 Query: 187 MGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MGEPL N+ ++ ++ + G S R + +ST G VP I ++ +E + V LA+SL Sbjct: 197 MGEPLANYKSLLHTIRTLTAEVPQGFGISARNLVVSTVGLVPGIRKLTQEGLPVTLAVSL 256 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA ++LRN L+P+NR+Y ++ L+D Y + R++ EY +++ +ND P A L Sbjct: 257 HAPDDELRNELIPMNRRYQVDELLDTAYAYFQATGR-RVSIEYALIRDMNDHPWRAQLLA 315 Query: 304 KILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L A +N IP NP PG + S + + F E ++++G S+ +R RG DI Sbjct: 316 DKLNERGKTWAHVNPIPLNPTPGSIWDASLPRVMDEFMEILRQAGISTTLRDTRGSDIDG 375 Query: 361 ACGQLKSLSKRIPKV 375 ACGQL + +K+ P Sbjct: 376 ACGQLAAKAKQSPAA 390 >gi|145224701|ref|YP_001135379.1| radical SAM protein [Mycobacterium gilvum PYR-GCK] gi|205829813|sp|A4TC75|RLMN_MYCGI RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|145217187|gb|ABP46591.1| 23S rRNA m(2)A-2503 methyltransferase [Mycobacterium gilvum PYR-GCK] Length = 365 Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats. Identities = 124/375 (33%), Positives = 183/375 (48%), Gaps = 32/375 (8%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 L + E A+ +G+P R Q+ + R I D M+D+ VR Sbjct: 14 RALPPRHFADLADTERAAAVADLGLPA----FRGKQLANQYFGRLISDPSQMTDLPAGVR 69 Query: 62 HLLNQHFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119 + E +I CD TRK L R + E+V + R T+C+S Sbjct: 70 DQVGAALFPELLE-AAREIECDRGETRKVLWRAVDKTT-----FESVLMRYPDRNTVCIS 123 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 SQ GC + C FC TG L RNL+ EIL QV A + L D G ++ Sbjct: 124 SQAGCGMACPFCATGQGGLKRNLSTAEILEQVRFASAELRD-------------REGGRL 170 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIAS--DSMGLSFSKRRITLSTSGFVPNIARVGEE-IG 236 SNIV MGMGEPL N++ V ++ + G S R +T+ST G P I ++ +E + Sbjct: 171 SNIVFMGMGEPLANYNRVVAAVRRITASSPHGFGISARSVTVSTVGLAPAIRKLADEKLN 230 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 V LA+SLH ++LR+ LVP+N ++ ++ ++DA R+Y L+ R++ EY +++ +ND P Sbjct: 231 VTLAVSLHTPDDELRDTLVPVNNRWKVDEVLDAARYYADLTGR-RVSIEYALIRDVNDQP 289 Query: 297 RDALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353 A L + L G +NLIP NP PG E+ S + F ++ G S +R Sbjct: 290 WRADLLGRKLHATLGPLVHVNLIPLNPTPGSEWDASPKPVEREFVRRVRAKGVSCTVRDT 349 Query: 354 RGLDILAACGQLKSL 368 RG +I AACGQL + Sbjct: 350 RGREIAAACGQLAAQ 364 >gi|327398526|ref|YP_004339395.1| Ribosomal RNA large subunit methyltransferase N [Hippea maritima DSM 10411] gi|327181155|gb|AEA33336.1| Ribosomal RNA large subunit methyltransferase N [Hippea maritima DSM 10411] Length = 342 Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats. Identities = 124/367 (33%), Positives = 203/367 (55%), Gaps = 31/367 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++ + +EL+ L+ +G + R QI+ ++Y + I F ++ + +EVR L + Sbjct: 2 IDIMSLEYDELKSILIGLGYE----KYRAEQIFSFLYKQRIEGFDDITVLKKEVRRQLKE 57 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCS 125 F I E + DGT+K+L + + IE+V IP E +R T+CVS+Q GC Sbjct: 58 QFFIYKIEEKTSYAADDGTKKYLFKLNDGML-----IESVLIPMEANRFTICVSTQAGCR 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG RNL+ EI+ QV+ + K +N+V M Sbjct: 113 MGCKFCATGRMGFKRNLSTSEIVSQVVYILKVN-----------------NLKTANVVYM 155 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLH 244 GMGEPL N++N KS+ I SD GLS SKRRITLST+G P + ++ +++ + +A+SLH Sbjct: 156 GMGEPLDNYENTVKSIKILSDDRGLSISKRRITLSTAGITPGVNKLKKDLPNINMALSLH 215 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 ++ + R++++PIN YP++ +++ + +P + +RITFEYVM+KGIND+ D L+K Sbjct: 216 SIISKKRSMIMPINDTYPIDEVLNELKDFP-MPRRKRITFEYVMIKGINDTKDDLKALLK 274 Query: 305 ILKGIPAKINLIPFNPWP--GCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++ K+N+IP N G ++ + I F++ ++ G IR +G I AAC Sbjct: 275 VMSNFKCKLNIIPLNKHDLLGTKFEPTPMDRIEEFADYLRNKGMFVTIRKSKGSSINAAC 334 Query: 363 GQLKSLS 369 G L + + Sbjct: 335 GMLATKA 341 >gi|225449545|ref|XP_002283725.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296086245|emb|CBI31686.3| unnamed protein product [Vitis vinifera] Length = 407 Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats. Identities = 124/374 (33%), Positives = 190/374 (50%), Gaps = 38/374 (10%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH- 67 L+GM +EL++ L +G R Q+ IY R +++ Q S + Q R+ L + Sbjct: 45 LLGMSEQELQQLSLDLG----QQSYRGKQLHHLIYKRKVKEIQHFSQLPQAFRNDLQEGG 100 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVSSQV 122 + + I + DGT K L++ + +ETV IP + R T CVSSQV Sbjct: 101 WRVGRSSIYQSVTAADGTVKLLIKLADNRL-----VETVGIPVEHDKGSFRLTACVSSQV 155 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L CSFC TG RNL EI+ QVL + +++N+ Sbjct: 156 GCPLRCSFCATGKGGYSRNLQRHEIVEQVLAIEEIFKQ-----------------RVTNV 198 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAI 241 V MGMGEP+ N +V ++ + + +R IT+S+ G I ++ ++ LAI Sbjct: 199 VFMGMGEPMLNLKSVIEAHRCLNKD--VQIGQRMITISSVGVPNTIKKLASYKLQSTLAI 256 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA + LR +VP + YPL+ ++ CR Y L +RR++FEY +L G+ND+ A+ Sbjct: 257 SLHAPNQKLRETIVPSAKSYPLDAIMKDCRDYF-LETSRRVSFEYTLLAGVNDAVEHAIE 315 Query: 302 LIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L ++L G +NLIPFNP G E+ K + F+ ++ + +R RGLD Sbjct: 316 LAELLHEWGPGYHVNLIPFNPIEGSEFQRPYNKAVQAFAGALESRKVTVSVRQTRGLDAS 375 Query: 360 AACGQLKSLSKRIP 373 AACGQL++ ++IP Sbjct: 376 AACGQLRNEFQKIP 389 >gi|162453111|ref|YP_001615478.1| radical SAM superfamily protein [Sorangium cellulosum 'So ce 56'] gi|205829655|sp|A9FFJ6|RLMN_SORC5 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|161163693|emb|CAN94998.1| Radical SAM superfamily protein [Sorangium cellulosum 'So ce 56'] Length = 389 Score = 358 bits (920), Expect = 7e-97, Method: Composition-based stats. Identities = 149/398 (37%), Positives = 207/398 (52%), Gaps = 63/398 (15%) Query: 18 EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEI 75 EE + Q+++WI+ RG+ D M+++ +R L ++ PE Sbjct: 14 EEWSASLAAR-GERSFTAKQVFQWIHRRGVLDPAAMTNLPARLREHLAAEGLGEVLTPER 72 Query: 76 VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS----------------------- 112 V S DGTRK LLR IETV +P S Sbjct: 73 VHR--SEDGTRKLLLRLRD-----GATIETVLLPSVSGPGSQAQLDADAAAALDDDEDDD 125 Query: 113 -----------RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF 161 R T C+S+QVGC++ C FC +G L R+L AEEI QVLL R++L + Sbjct: 126 AAAEAGAAPRVRVTQCISTQVGCAMGCGFCASGVAGLKRHLGAEEIAGQVLLGRAMLEE- 184 Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221 G ++ N+V MGMGEPL N++ +SL + + G++ S RR+T+ST Sbjct: 185 --------------GEELRNVVYMGMGEPLHNYEATARSLRLLTHPEGINLSTRRVTVST 230 Query: 222 SGFVPNIARVGEEI--GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279 SG VP IAR+G + + LAISLHA ++ R+ L+PINRK+PL+ L+ A R YP L Sbjct: 231 SGLVPEIARLGADFGGQIALAISLHAADDETRSALMPINRKHPLDELLAALRAYP-LPRR 289 Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSE 339 RRIT EY ++ G ND P +A L K+L+G+P KINLIP NP Q+ + F E Sbjct: 290 RRITIEYTLVAGQNDDPAEARRLAKLLRGLPVKINLIPMNPIEASSLGPPAQERVAAFQE 349 Query: 340 CIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPR 377 + ++GYS +R RG D+ AACGQL L + PKV R Sbjct: 350 VLTQAGYSCFVRRRRGDDVSAACGQLVLLGAK-PKVRR 386 >gi|194336581|ref|YP_002018375.1| radical SAM enzyme, Cfr family [Pelodictyon phaeoclathratiforme BU-1] gi|254807191|sp|B4SA62|RLMN_PELPB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|194309058|gb|ACF43758.1| radical SAM enzyme, Cfr family [Pelodictyon phaeoclathratiforme BU-1] Length = 359 Score = 358 bits (920), Expect = 7e-97, Method: Composition-based stats. Identities = 129/378 (34%), Positives = 190/378 (50%), Gaps = 30/378 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +++++ + EL++AL +G P R +QI +W++ F+ M+ +S +R L Sbjct: 4 QQQNITDLTLTELQQALSLLGEPA----FRATQIHQWLFSHHAASFEEMTILSLALRKKL 59 Query: 65 NQHFSIIYPEIVDEKI--SCD---GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119 ++ FSI + V+ + D T K LL + +E+V I ++R T CVS Sbjct: 60 SESFSIHPLKRVEHQECFEEDCESPTEKILLELQDKS-----RVESVLIATENRRTACVS 114 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 SQ+GC L C FC TG RNLTA EI Q+ L+G G+ + Sbjct: 115 SQIGCPLQCPFCATGQMGFRRNLTAGEITGQIYALNELVG------------AKEPGKSL 162 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIA-SDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGV 237 +NIV MGMGEPL N NV +++ + + S++RIT+ST G +P I R+G+ + Sbjct: 163 TNIVFMGMGEPLLNTGNVIEAIETLSTRNYRFCLSQKRITISTVGVIPEIQRLGKSGMKT 222 Query: 238 MLAISLHAVSNDLRNILVPIN-RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 LA+SLHA R L+PI R+YPL+ L A Y S +T Y++LKGINDS Sbjct: 223 KLAVSLHAADQQKRESLMPIASRQYPLKELGTALSEYTQ-STGMPVTIVYLLLKGINDSL 281 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 DA L + K KINLI +N ++ F + + SG IR G Sbjct: 282 DDAKMLARFSKTFLCKINLIDYNSIINIKFKPVYSATRDMFQQYLINSGLHVTIRKSYGT 341 Query: 357 DILAACGQLKSLSKRIPK 374 I AACGQL + S + P+ Sbjct: 342 TINAACGQLATASMQNPQ 359 >gi|145340644|ref|XP_001415431.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144575654|gb|ABO93723.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 340 Score = 358 bits (920), Expect = 7e-97, Method: Composition-based stats. Identities = 115/350 (32%), Positives = 174/350 (49%), Gaps = 36/350 (10%) Query: 33 MRTSQIWKWIYVRG---IRDFQGMSDISQEVRHLLN-QHFSIIYPEIVDEKISCDGTRKW 88 R QI +Y R + +S+++R L + + + DGT K Sbjct: 4 FRGKQIADHLYAPNGASARSVDDFTTLSKKLREELKSANVRVGRSRRHHVAAASDGTAKL 63 Query: 89 LLRFPARCIGGPVEIETVYIP----EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTA 144 LLR + +ETV IP K+R T CVSSQVGC + C+FC TG RNL Sbjct: 64 LLRLDDDRV-----VETVGIPATENGKNRLTACVSSQVGCPMRCTFCATGKGGFARNLAP 118 Query: 145 EEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIA 204 EI+ QVL G ++SN+V MGMGEPL N NV K+ Sbjct: 119 HEIVDQVLALEEYFGQ-----------------RVSNVVFMGMGEPLLNVPNVLKAHEAL 161 Query: 205 SDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPL 263 + + R IT+ST G +I ++ ++ +LA+SLHA + +LR ++P + YP+ Sbjct: 162 NKE--IGIGARHITISTVGVRGSIEKLAHAQLQSVLAVSLHAPNQELRETIIPSAKVYPM 219 Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPW 321 E L+ C Y ++ RR+TFEY +L GIND P A L ++L + + + +NLIP+NP Sbjct: 220 EDLLQDCEQYF-VATGRRVTFEYTLLGGINDQPEHAKELGRLLYARNLASHVNLIPYNPV 278 Query: 322 PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 +Y + + F + ++ + IR RGL+ AACGQL++ ++ Sbjct: 279 DDSDYQRPSRATVYAFRDILEGLNVPASIRQTRGLEAAAACGQLRNAFQK 328 >gi|300742035|ref|ZP_07072056.1| radical SAM enzyme, Cfr family [Rothia dentocariosa M567] gi|311111949|ref|YP_003983171.1| cfr family radical SAM enzyme [Rothia dentocariosa ATCC 17931] gi|300381220|gb|EFJ77782.1| radical SAM enzyme, Cfr family [Rothia dentocariosa M567] gi|310943443|gb|ADP39737.1| cfr family radical SAM enzyme [Rothia dentocariosa ATCC 17931] Length = 409 Score = 358 bits (919), Expect = 8e-97, Method: Composition-based stats. Identities = 120/372 (32%), Positives = 184/372 (49%), Gaps = 19/372 (5%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + + E L ++G R SQ+ K + R + D M+D+ + R + Sbjct: 48 KHIADFDMAGRREFLKELGY----QPFRASQLSKHYFERLVNDPAQMTDLPAQDRDEIVS 103 Query: 67 HFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 V + DG T K + R + IE+V + +R T+C+SSQ GC Sbjct: 104 RAMPQLLTPV-RTLEADGGDTLKVVHRLFDGAL-----IESVIMRYDNRVTMCISSQAGC 157 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG Q L RNL+ EI+ QV+ L G + +G + ++SNIV Sbjct: 158 GMNCPFCATGQQGLTRNLSTAEIVEQVVAGARYLKQMKGLDKADGGSEDTRPLRVSNIVF 217 Query: 185 MGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAI 241 MGMGE L N+ + ++ D GL S R +T+ST G VP I + E++ + LA+ Sbjct: 218 MGMGEALANYKSTMGAVHRLIDPAPEGLGISARGLTMSTVGLVPGIRKFELEKLPITLAL 277 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++LR+ L+PIN+++ ++ +DA Y + RRI+ EY +++ IND A Sbjct: 278 SLHAPDDELRDELIPINQRWKVDETLDAAYDYY-RTTGRRISIEYALIRDINDQGWRADL 336 Query: 302 LIKIL--KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 L K L +G +N IP NP PG ++ S + F E ++ G + IR RG DI Sbjct: 337 LGKKLAQRGRGWVHVNPIPLNPTPGSKWTASRKGVEQNFVERLRAHGIPTTIRDTRGSDI 396 Query: 359 LAACGQLKSLSK 370 ACGQL + + Sbjct: 397 DGACGQLAAKEE 408 >gi|257068200|ref|YP_003154455.1| ribosomal RNA large subunit methyltransferase N [Brachybacterium faecium DSM 4810] gi|256559018|gb|ACU84865.1| radical SAM enzyme, Cfr family [Brachybacterium faecium DSM 4810] Length = 429 Score = 358 bits (919), Expect = 8e-97, Method: Composition-based stats. Identities = 117/370 (31%), Positives = 183/370 (49%), Gaps = 27/370 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L + E A+ ++G+P R Q+ + + ++D+ ++ R L + Sbjct: 53 VHLADLSLTERVAAVEEMGLPG----FRAKQLSVHYFEHFTTAAEDLTDLPRDRRDELVE 108 Query: 67 HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F V + + G T+K+L + + +E+V + R TLC+SS+ GC Sbjct: 109 RFFPPLLTQVSRQSADHGATQKFLWQLFDGPM-----VESVLMRYSDRNTLCISSEAGCG 163 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG L RNL+A EIL QV +A + + +P +++NIV M Sbjct: 164 MNCPFCATGQMGLTRNLSAAEILEQVRIANRM---------LAREELPGGPGRVNNIVFM 214 Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAIS 242 GMGEPL N+ V + G R IT+ST G P + ++ E+I V LA+S Sbjct: 215 GMGEPLANYRPVATVCKRLNAPAPEGFGMGARHITVSTVGLAPAVRKLTAEKIPVTLAVS 274 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA + LR+ LVPIN ++ ++ ++DA Y + R++ EY +++ IND A L Sbjct: 275 LHAPDDALRDELVPINTRFDVDEILDAAWEYFEATGR-RVSIEYALIRDINDQQHRAQLL 333 Query: 303 IKIL--KG--IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 + L KG +N IP NP G ++ SD + TF E ++ +G S+ IR RG DI Sbjct: 334 AERLIAKGGAHWVHVNPIPLNPVKGSKWTASDPQVEKTFVETLRDNGISATIRDTRGSDI 393 Query: 359 LAACGQLKSL 368 ACGQL + Sbjct: 394 DGACGQLAAE 403 >gi|328956372|ref|YP_004373705.1| 23S rRNA m(2)A-2503 methyltransferase [Coriobacterium glomerans PW2] gi|328456696|gb|AEB07890.1| 23S rRNA m(2)A-2503 methyltransferase [Coriobacterium glomerans PW2] Length = 348 Score = 358 bits (919), Expect = 9e-97, Method: Composition-based stats. Identities = 112/373 (30%), Positives = 178/373 (47%), Gaps = 30/373 (8%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 N + + + +++ A+ ++ P R +Q+ +W++ + F M+++ + R Sbjct: 5 NQM--RDIRSLSDDDIRSAVAQLDQP----MFRATQVLEWLHKKNASSFDEMTNLPKSFR 58 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L + FS P + ++IS D TRK+LL F V +E V IP + + T C+S+Q Sbjct: 59 TQLAERFSFAVPRQIAQQISRDRTRKYLLEFSD-----GVSVEAVGIPGRGKLTACISTQ 113 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC + C+FC TG L R+ TA E++ QVL ++++ Sbjct: 114 AGCGMRCAFCATGLAGLARSCTAREMVDQVLHIAR-----------------DFNERVTS 156 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLA 240 +V MG GEP NFD ++L +D GL R +T+ST G +P I + LA Sbjct: 157 VVFMGQGEPFANFDETVRALRTLNDPRGLKIGARHLTVSTCGIIPGIRAFAKLPEQFTLA 216 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ISLH+ S RN L+P +KY L L +A + Y + R T+E M++GIND+ + Sbjct: 217 ISLHSASQQTRNQLMPGVKKYTLPRLYEALQEYVEATGR-RPTYEIAMIEGINDTNPEMR 275 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 + +G +NLI + +P E S + + + G + IR RG DI A Sbjct: 276 AICDFCEGTLCHVNLIQLSDFPDSELHPSPLFKLEELQKRLTARGVQTTIRCSRGADIDA 335 Query: 361 ACGQLKSLSKRIP 373 ACGQLK Sbjct: 336 ACGQLKQRRPNAR 348 >gi|30687969|ref|NP_850319.1| radical SAM domain-containing protein [Arabidopsis thaliana] gi|330254611|gb|AEC09705.1| radical SAM domain-containing protein [Arabidopsis thaliana] Length = 431 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 123/385 (31%), Positives = 187/385 (48%), Gaps = 36/385 (9%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH- 67 LIGM EL+E + + + R Q+ IY R + + S++ R L Sbjct: 64 LIGMSEPELQELAINL-VLIFQEGYRGKQLHHLIYKRKVNKVEDFSNLPLTFRKGLVDGG 122 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCVSSQ 121 F + I + DGT K + + IETV IP + R T CVSSQ Sbjct: 123 FKVGRSPIYQTVTATDGTIK-----LLLKLEDNLLIETVGIPVQDDEKGITRLTACVSSQ 177 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC L CSFC TG RNL EI+ QVL + +++N Sbjct: 178 VGCPLRCSFCATGKGGFSRNLQRHEIIEQVLAIEDVFKH-----------------RVTN 220 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLA 240 +V MGMGEP+ N +V + + + +R IT+ST G I ++ ++ LA Sbjct: 221 VVFMGMGEPMLNLKSVLDAHRCLNKD--IEIGQRMITISTVGVPNTIKKLASHKLQSTLA 278 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA + LR +VP + YPLE ++ CR Y +N R++FEY +L G+ND A+ Sbjct: 279 VSLHAPNQSLREKIVPSAKAYPLEAIMKDCRDYFQETNR-RVSFEYALLAGVNDQVEHAV 337 Query: 301 NLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 L ++L+ G +NLIP+NP G EY +K ++ F+ ++ ++ +R RGLD Sbjct: 338 ELAELLREWGKTYHVNLIPYNPIEGSEYQRPYKKAVLAFAAALESRKITASVRQTRGLDA 397 Query: 359 LAACGQLKSLSKRIPKVPRQEMQIT 383 AACGQL++ ++ P + + Q + Sbjct: 398 SAACGQLRNKFQKSPLLTETDSQES 422 >gi|110597428|ref|ZP_01385715.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031] gi|110340972|gb|EAT59443.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031] Length = 362 Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 128/378 (33%), Positives = 194/378 (51%), Gaps = 32/378 (8%) Query: 1 MNFLKK--ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQ 58 M + ++I + EL+ A+ + P R +QI +W++ + F+ M+ +S+ Sbjct: 1 METMTTALPNIIDLSFPELQHAIASLDEPS----FRAAQIHQWLFSHQAKSFEEMTTLSR 56 Query: 59 EVRHLLNQHFSIIYPEIVDE----KISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSR 113 +R L + FSI + ++VD + S D T K LL+ P + IETV IP ++R Sbjct: 57 TLRQKLAETFSISHLQLVDHLESTEESGDNLTEKILLKLPDNEL-----IETVLIPAENR 111 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 T C+SSQ GC+ C+FC TG L RNLTA EI QV +++ + Sbjct: 112 LTACLSSQAGCAFQCTFCATGKMGLHRNLTAGEIAGQVYALNAIV------------SMR 159 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS-DSMGLSFSKRRITLSTSGFVPNIARVG 232 +KI+NIV MGMGEPL N+DN+ +S+ + + ++ S+++IT+ST G +P I ++G Sbjct: 160 KPDKKITNIVFMGMGEPLMNYDNILESIETLTTKNYNVTLSQKKITISTVGVIPQIRKLG 219 Query: 233 EE-IGVMLAISLHAVSNDLRNILVPINRK-YPLEMLIDACRHYPGLSNARRITFEYVMLK 290 + LA+SLHA R L+P+ K YPL L A Y + A +T Y++ K Sbjct: 220 ASGLKTKLAVSLHAAEQQKRESLMPVAAKLYPLNELGKALAGYSSAT-AMPVTIVYMLQK 278 Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI 350 GINDS DA L + G KINLI +N + + F + + SG + Sbjct: 279 GINDSLEDAKLLARFAHGFLCKINLIDYNSIINIRFKPVNSSSREVFQQYLIDSGLHVTV 338 Query: 351 RTPRGLDILAACGQLKSL 368 R G I AACGQL + Sbjct: 339 RKSYGTTINAACGQLATT 356 >gi|182412656|ref|YP_001817722.1| radical SAM protein [Opitutus terrae PB90-1] gi|205829647|sp|B1ZVM5|RLMN2_OPITP RecName: Full=Ribosomal RNA large subunit methyltransferase N 2; AltName: Full=23S rRNA m2A2503 methyltransferase 2 gi|177839870|gb|ACB74122.1| radical SAM enzyme, Cfr family [Opitutus terrae PB90-1] Length = 428 Score = 357 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 131/385 (34%), Positives = 195/385 (50%), Gaps = 31/385 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L R EL L + + H ++IW ++Y+ + F M+++ VR L Sbjct: 53 TNLYDFTRAELRLWLSRRELNPVH----AARIWSYLYLDLVEGFGAMTELPARVRARLEA 108 Query: 67 HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + +I E S DG TRK+LL IETV + R T CVSSQVGC+ Sbjct: 109 EMCVGNLKIARETDSRDGFTRKYLLEL-----ADGAAIETVLMRFAGRATACVSSQVGCA 163 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARS------------LLGDFPGCEDIEGMVIP 173 + C FC TG R+LTA EI+ Q + + PG E E Sbjct: 164 MGCVFCATGQMGYTRHLTAGEIVAQAVHVARALRTAAFEKCHVMRDPSPGREAGEKSRDE 223 Query: 174 SVGR------KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227 + ++ N+V+MGMGEPL N++ V +++ I D GL+ RITLST G VP Sbjct: 224 ADRHRAPPTPRLRNLVLMGMGEPLHNYEAVMRAVDILRDDGGLALGAERITLSTVGVVPG 283 Query: 228 IARV-GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286 I R+ E+ V LA+SLHA + R LVP+ +K+PL+ L+ ACR Y + RR+ +E+ Sbjct: 284 ILRLAAEKRPVHLAVSLHAADQEERAALVPVAKKWPLDELMAACRTYSE-TTGRRVFYEW 342 Query: 287 VMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI-KRSG 345 +++G ND+ A + ++L+G+PA++NLIP NP G + + F E + + Sbjct: 343 TLIEGRNDTAAHARAVGRLLRGLPAQVNLIPLNPTAGYDGTPGRTEAARRFQEILSREFA 402 Query: 346 YSSPIRTPRGLDILAACGQLKSLSK 370 S +R RG+DI A CGQL + Sbjct: 403 LPSTVRQRRGIDIAAGCGQLAVAEQ 427 >gi|78188796|ref|YP_379134.1| hypothetical protein Cag_0825 [Chlorobium chlorochromatii CaD3] gi|123770876|sp|Q3ASD4|RLMN_CHLCH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|78170995|gb|ABB28091.1| 23S rRNA m(2)A-2503 methyltransferase [Chlorobium chlorochromatii CaD3] Length = 366 Score = 357 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 125/373 (33%), Positives = 185/373 (49%), Gaps = 32/373 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L+ + EL A+ G P R QI +W++ F MS + +R L + Sbjct: 14 INLVDLRYNELHNAITAFGEPP----FRAKQIHEWLFSHHANSFAAMSSLPLRLREKLAE 69 Query: 67 HFSIIYPEIVDEKISCDG-----TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 F++ PE+V+ + SC+ TRK LL+ + IE V IP + R T C+SSQ Sbjct: 70 RFTLQRPEVVEVQESCESGCLRPTRKILLKLSDGAL-----IECVLIPAEERMTACLSSQ 124 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC + C+FC TGT L RNL+A EI Q+ + G+ I+N Sbjct: 125 AGCPMQCTFCATGTMGLQRNLSAGEIWEQLYALN--------------GLALQEGKTITN 170 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASD-SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239 +V MGMGEPL N DNV ++++ S + LS S+R+IT+ST G VP I R+ + L Sbjct: 171 VVFMGMGEPLLNTDNVLEAIATMSSRNYNLSLSQRKITISTVGIVPEIERLSRSGLKTKL 230 Query: 240 AISLHAVSNDLRNILVPINR-KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 A+SLH+ ++R L+PI +YPL +L + Y + IT Y+ML G+NDS D Sbjct: 231 AVSLHSARQEVRQQLMPIAAERYPLPLLSKSLEAY-SKATGEAITIVYMMLNGVNDSKED 289 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L + + KINLI +NP + + F + + +R G + Sbjct: 290 AHLLARYCRHFSCKINLIDYNPILTIRFGSVQESQKNEFQAYLMAQKFHVTVRKSYGASV 349 Query: 359 LAACGQLKSLSKR 371 AACGQL + +R Sbjct: 350 NAACGQLVTQQQR 362 >gi|294790917|ref|ZP_06756075.1| radical SAM enzyme, Cfr family [Scardovia inopinata F0304] gi|294458814|gb|EFG27167.1| radical SAM enzyme, Cfr family [Scardovia inopinata F0304] Length = 424 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 124/366 (33%), Positives = 182/366 (49%), Gaps = 27/366 (7%) Query: 11 GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70 M +EE A+ K+G P R Q+ + + R+ SD Q+ ++ F Sbjct: 58 DMDQEERAAAMAKLGYPS----FRVKQLGQHYFAHYNREVSSYSDFPQQQAQVVENTFFP 113 Query: 71 IYPEIVDEKISCDGTR-KWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129 + E+ + GT K L + IE+V + +R TLC+SSQVGC + C Sbjct: 114 SLIRPLAEQEADQGTTVKTLW-----GLFDGSRIESVLMKYPTRTTLCISSQVGCGMGCP 168 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 FC TG L RN++A EIL QV A D ++SN+V MGMGE Sbjct: 169 FCATGKLGLTRNMSAGEILEQVRYAARQARD----------GRLGQPSRLSNVVFMGMGE 218 Query: 190 PLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 L N+ + K++ S G S R IT+ST G VP I R+ E I V LA+SLHA Sbjct: 219 ALGNYKAMMKAIRQISALPPDGFGISARNITVSTVGIVPGIRRLMTEGIPVRLAVSLHAP 278 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 S+ LR+ LVP+N+++ + ++DA Y ++ RR++ EY ++KGIND + A L K L Sbjct: 279 SDSLRDELVPMNKRFAISQVLDAAHDYY-VATKRRVSIEYALMKGINDQAQHARLLAKRL 337 Query: 307 K---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +N IP NP G + S +D F + + ++G ++ +R RG DI ACG Sbjct: 338 NHYGDDWVHVNPIPLNPIEGSRWTASKPEDEKRFLDILHQAGIAATLRDTRGSDIDGACG 397 Query: 364 QLKSLS 369 QL + Sbjct: 398 QLAAKE 403 >gi|168702822|ref|ZP_02735099.1| hypothetical protein GobsU_25056 [Gemmata obscuriglobus UQM 2246] Length = 355 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 121/360 (33%), Positives = 187/360 (51%), Gaps = 19/360 (5%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 M E L L + G P MR +QI K I F+ MSD+ + +R L F + Sbjct: 1 MPAETLRAWLTERGQPP----MRVNQICKQILANRATAFEDMSDLPKGLRADLAGAFRVF 56 Query: 72 YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131 + + D T K++LR IE V I + R T C+S+QVGC + C FC Sbjct: 57 SMSVERHFAASDDTHKFVLRL-----ADGRMIEAVLIQDDGRATACISTQVGCGMGCVFC 111 Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191 +G +VRNLTA E++ Q++L R+L P ++++IV+MGMGEPL Sbjct: 112 ASGLNGVVRNLTAGEMVEQLVLLRNLTD--------ANSTNPERAPRLTHIVVMGMGEPL 163 Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDL 250 N DN+ +L++A D GL R +T+ST G I ++ E LA+SLHA +++L Sbjct: 164 ANLDNLLDALAVAGDKNGLGIGARHVTISTVGLPAKIRKLAESGKQYHLAVSLHAPNDEL 223 Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310 R +VP N K ++ ++ A + + + +T+EYV+L G+ND A L +L+G Sbjct: 224 RTRIVPTNDKVGMDAILAAADEFYEKTGRQ-VTYEYVVLGGLNDQAPHARQLAGLLRGRQ 282 Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 A +NLIP+N G + D+ + ++R G S +R +G +I AACGQL+ ++ Sbjct: 283 AHVNLIPWNAVEGLAFKRPADADLQYLIDTLRRGGISVKVRKRKGAEIDAACGQLRRQAE 342 >gi|291287807|ref|YP_003504623.1| radical SAM enzyme, Cfr family [Denitrovibrio acetiphilus DSM 12809] gi|290884967|gb|ADD68667.1| radical SAM enzyme, Cfr family [Denitrovibrio acetiphilus DSM 12809] Length = 357 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 131/371 (35%), Positives = 186/371 (50%), Gaps = 27/371 (7%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L M + ELE ++ G+ + R QI KW+Y RG M+D+S R L Sbjct: 7 LDSMNKFELENFVISQGM----QKFRAIQIHKWVYRRGAESVAEMTDLSIADREKLLGMA 62 Query: 69 SIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 + D + S DG+ K+L IE V + + R T C+SSQVGC + Sbjct: 63 KFTVMNVADVRKSAMDGSVKFLFSLED-----GETIEAVVLNDGRRLTACISSQVGCRMG 117 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C+FC T L RNLT EI+ QV + S G K++N+V MGM Sbjct: 118 CAFCSTAKMGLRRNLTMGEIIKQV--------------KRLNEYLASEGTKLNNLVFMGM 163 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAV 246 GEPL N DNVK ++++ D G FS ++ITLST G + + + V LA+S++A Sbjct: 164 GEPLDNLDNVKNAINVLLDDDGYGFSHKKITLSTCGLTDRLEELFAMDTPVNLAVSVNAA 223 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 + R L+P++ KYPL L+D + P L + IT EYV+L+G+ND+ DA L K+L Sbjct: 224 DQETRKGLMPVSNKYPLSGLMDVLKKLP-LQKRKSITIEYVLLRGVNDTLDDARKLAKLL 282 Query: 307 KGI-PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +G+ KINLI +N YL +KD + F E + + IR G DI ACGQL Sbjct: 283 RGLDKVKINLITYNSGGDAGYLPPSEKDTLKFQEYLISNKIGVFIRKSLGRDIEGACGQL 342 Query: 366 KSLSKRIPKVP 376 ++ K Sbjct: 343 RAKHDESQKSE 353 >gi|152965388|ref|YP_001361172.1| ribosomal RNA large subunit methyltransferase N [Kineococcus radiotolerans SRS30216] gi|205829778|sp|A6W7W9|RLMN_KINRD RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|151359905|gb|ABS02908.1| radical SAM enzyme, Cfr family [Kineococcus radiotolerans SRS30216] Length = 391 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 116/377 (30%), Positives = 180/377 (47%), Gaps = 28/377 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + + E A++++G R Q+ + R D M+D+ R + + Sbjct: 35 RHFVDLEPAERGPAMVELG----EKAFRGKQLATQWFERLEDDPARMTDLPAASRTRIAE 90 Query: 67 HFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + ++ DG T K L R + +E+V + K+R T+C+SSQ GC Sbjct: 91 ALLPTLLTPI-RTLTADGGTTIKSLYRLHDGAL-----VESVLMRYKNRDTICISSQAGC 144 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EI+ QV A + +P ++SN+V Sbjct: 145 GMNCPFCATGQAGLTRNLSTAEIVEQVTAASR---------ALARDEVPGGPGRVSNVVF 195 Query: 185 MGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAI 241 MGMGE L N+ + ++ GL S R +T+ST G VP I + +E I LA+ Sbjct: 196 MGMGEALANYKSAVAAVRRLVSPAPDGLGISARGVTMSTVGLVPAIDKFAQEGIAATLAL 255 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA ++LR+ LVPIN+++ + +DA R Y + R++ EY ++K IND A Sbjct: 256 SLHAPDDELRDELVPINQRWKVGEALDAARRYFEATGR-RVSIEYALIKDINDQAWRADR 314 Query: 302 LIKIL--KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 L K+L +G +N IP NP PG ++ SD F ++ G + +R RG DI Sbjct: 315 LGKLLNARGRGWVHVNPIPLNPTPGSKWTASDPAVERAFVAALENRGIPTTVRDTRGSDI 374 Query: 359 LAACGQLKSLSKRIPKV 375 ACGQL ++ P+ Sbjct: 375 DGACGQLAAIGPEQPRA 391 >gi|309811464|ref|ZP_07705246.1| 23S rRNA m2A2503 methyltransferase [Dermacoccus sp. Ellin185] gi|308434515|gb|EFP58365.1| 23S rRNA m2A2503 methyltransferase [Dermacoccus sp. Ellin185] Length = 394 Score = 356 bits (915), Expect = 3e-96, Method: Composition-based stats. Identities = 117/372 (31%), Positives = 178/372 (47%), Gaps = 23/372 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + L + ++G+P R Q+ + R + D M+D+ + R + Sbjct: 36 KHLADFDLAGRQALAKELGLPA----FRAKQLSNHYFERFVADPAEMTDLPKNGREEMVA 91 Query: 67 HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + ++ G T K + R + +E+V + R T+C+SSQ GC Sbjct: 92 QLMPTLLTSIKTLVADGGNTLKQVHRLFDGAL-----VESVIMRYPGRVTMCISSQAGCG 146 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSL--LGDFPGCEDIEGMVIPSVGRKISNIV 183 + C FC TG + L RNLT EI+ QV+ L G+ PG +D E ++SN+V Sbjct: 147 MNCPFCATGQEGLTRNLTTAEIVEQVVAGARLLRSGELPGLDDDE----RETPLRVSNVV 202 Query: 184 MMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240 MGMGE L N+ ++ GL S R +T+ST G VP I ++ E I V LA Sbjct: 203 FMGMGEALANYRQAIDAIKRLVSPAPEGLGMSARGVTMSTVGLVPAIDKLAAEGIPVTLA 262 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++LRN LVPIN ++ ++ +DA Y + R++ EY ++K IND A Sbjct: 263 LSLHAPDDELRNELVPINTRWSVDEALDAAHRYFEATGR-RVSIEYALIKDINDQGWRAD 321 Query: 301 NLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 L K L +N IP NP PG ++ S + F E ++ G + +R RG D Sbjct: 322 LLAKKLNARGKGWVHVNPIPLNPTPGSKWTASRKGVEQNFVERLRAGGIPTTVRDTRGSD 381 Query: 358 ILAACGQLKSLS 369 I ACGQL + + Sbjct: 382 IDGACGQLAAKT 393 >gi|189500366|ref|YP_001959836.1| radical SAM enzyme, Cfr family [Chlorobium phaeobacteroides BS1] gi|254807163|sp|B3EJF5|RLMN_CHLPB RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|189495807|gb|ACE04355.1| radical SAM enzyme, Cfr family [Chlorobium phaeobacteroides BS1] Length = 362 Score = 356 bits (913), Expect = 5e-96, Method: Composition-based stats. Identities = 126/379 (33%), Positives = 194/379 (51%), Gaps = 30/379 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K ++ R+EL + + +G P R QI +W++ + DF+ M +IS +R L+ Sbjct: 5 KTNIKAYTRQELRDTIAALGEPA----YRADQIHRWLFSDWVTDFEKMKNISASLREELS 60 Query: 66 QHFSIIYPE-----IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 + + I I + +S T K+L+ + +ETV IP R T+CVSS Sbjct: 61 RRYVIPSCSFENEAIEERSVSAPETSKFLVGLHDDEM-----VETVLIPSPDRHTVCVSS 115 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC L C+FC TG RNL A EI+ QVLL LGD S ++ Sbjct: 116 QVGCPLRCTFCATGYMGFTRNLLASEIVEQVLLVNERLGD------------RSPDNHVT 163 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDS-MGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238 N+V MGMGEPL N +NV ++ ++ S S++RIT+ST G +P I + + + Sbjct: 164 NMVFMGMGEPLLNLNNVFDAIETLTNQSYNFSLSRKRITISTVGLIPQIGELARSGLSIK 223 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LAISLHA + R L+P+ +++ LE L A Y + +T Y++++G+ND+ +D Sbjct: 224 LAISLHAADQEKRTSLIPVAKEHTLEELRHALHEYADMV-KEPVTLVYMLIEGVNDADQD 282 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A+NLI+ +G KINLI +N ++ + F + +G +R +G I Sbjct: 283 AINLIRFAQGFLCKINLIDYNCIVNVKFNPVKAEKRDRFIHTLVNAGVHVTVRKSQGASI 342 Query: 359 LAACGQLKSLSKRIPKVPR 377 AACGQL +L K+ R Sbjct: 343 DAACGQL-ALQKKNKTASR 360 >gi|269795650|ref|YP_003315105.1| radical SAM enzyme, Cfr family [Sanguibacter keddieii DSM 10542] gi|269097835|gb|ACZ22271.1| radical SAM enzyme, Cfr family [Sanguibacter keddieii DSM 10542] Length = 364 Score = 356 bits (913), Expect = 5e-96, Method: Composition-based stats. Identities = 123/370 (33%), Positives = 183/370 (49%), Gaps = 26/370 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-N 65 + EE A+ ++G R Q+ + D Q M+D+ R +L + Sbjct: 12 RHFADLSPEERVAAVTELG----EKPFRAKQLATHYFSHLTADPQDMTDLPAGSRDVLTD 67 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + ++ + T K L + V++E+V + SR TLCVSSQ GC Sbjct: 68 ALFPPLLTKVRTMEADGGTTVKTLWHLYDQ-----VKVESVLMRYTSRTTLCVSSQAGCG 122 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG L RNL+ EI+ QV A L D IP +++N+V M Sbjct: 123 MACPFCATGQLGLTRNLSTAEIVEQVRQAAKSLAD---------GEIPGGPTRLNNLVFM 173 Query: 186 GMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 GMGEPL N+ V ++ +A GL S R IT+ST G VP + ++ +E I V LA+S Sbjct: 174 GMGEPLANYKAVIGTVRQAVAPAPDGLGMSARNITVSTVGLVPAMNKLAKEGIPVTLALS 233 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA ++LR+ LVPIN ++ ++ ++DA R Y + R++ EY ++K +ND A L Sbjct: 234 LHAPDDELRSDLVPINTRWSVDEVLDAARGYFDATGR-RVSIEYALIKDMNDHAWRADLL 292 Query: 303 IKIL--KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 + L +G +N IP NP PG + S+Q F ++ G + IR RG DI Sbjct: 293 GEKLTARGQGWVHVNPIPLNPTPGSIWTASEQDVEDEFVARLRGHGIPTTIRDTRGSDID 352 Query: 360 AACGQLKSLS 369 ACGQL + Sbjct: 353 GACGQLAAEE 362 >gi|255085148|ref|XP_002505005.1| predicted protein [Micromonas sp. RCC299] gi|226520274|gb|ACO66263.1| predicted protein [Micromonas sp. RCC299] Length = 375 Score = 356 bits (913), Expect = 5e-96, Method: Composition-based stats. Identities = 119/374 (31%), Positives = 189/374 (50%), Gaps = 39/374 (10%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIY-VRGIRDFQGMSDISQEVR-HLLN 65 +L+GM EL+ + G+P + R Q+ +Y V+ ++ + + + R LL+ Sbjct: 23 NLLGMTLPELKTFAEEAGLP----KFRGKQLRDHLYGVKPAKNIDDLVTLPKAARRQLLD 78 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS----RGTLCVSSQ 121 S+ + S DGT K LLR + +ETV IP R T CVSSQ Sbjct: 79 AGVSVGRSVVHHVAGSPDGTTKLLLRLHDDRV-----VETVGIPAHEAGHRRLTACVSSQ 133 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC + C+FC TG RNL EI+ QV+ G+ ++++ Sbjct: 134 VGCPMRCTFCATGKGGFARNLATHEIVDQVVSLEEHFGE-----------------RVTH 176 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLA 240 IV MGMGEPL N NV ++ + +G R IT+ST G I R+ ++ LA Sbjct: 177 IVFMGMGEPLLNVPNVLRAHEALNKEVG--IGSRHITISTVGVRGAIERLARAKLQSTLA 234 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ISLHA + +LR L+P + YP++ L++ + Y ++ RR+TFEY +L G+NDS + A Sbjct: 235 ISLHAPNQELRERLIPSAKAYPMQELLNDAQQYF-IATGRRVTFEYTLLAGVNDSIQQAE 293 Query: 301 NLIKIL--KGIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 L ++L + + +N+IP+NP + + I+ F +++ + IR RGL+ Sbjct: 294 ELGRLLYKNKLASHVNIIPYNPVDDAPDFKRPGRASILNFRNTLEQMNVPASIRQSRGLE 353 Query: 358 ILAACGQLKSLSKR 371 AACGQL++ ++ Sbjct: 354 AAAACGQLRNAYQK 367 >gi|284929286|ref|YP_003421808.1| 23S rRNA m(2)A-2503 methyltransferase [cyanobacterium UCYN-A] gi|284809730|gb|ADB95427.1| 23S rRNA m(2)A-2503 methyltransferase [cyanobacterium UCYN-A] Length = 341 Score = 355 bits (912), Expect = 5e-96, Method: Composition-based stats. Identities = 123/368 (33%), Positives = 191/368 (51%), Gaps = 32/368 (8%) Query: 6 KES-LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K+ L+G EEL + + G P R Q+ +W+Y +GI+ + +S + R + Sbjct: 4 KQDILLGKSIEELTNWVEERGQPN----YRGKQLHQWLYHKGIKSLEEVSVFPKNWRKEI 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + + I ++ D TRK+LL I IETV IP R T+CVSSQVGC Sbjct: 60 AD-YPVGRSSINQLIVAPDKTRKYLLNLQDGLI-----IETVGIPTSKRLTVCVSSQVGC 113 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG RNLT EI+ Q+L + +++S++V Sbjct: 114 PMKCDFCATGKGDFKRNLTCAEIIDQILTVQE-----------------DFQQRVSHVVF 156 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISL 243 MGMGEPL N + K++ I + + +R +T+ST G I ++ + A+SL Sbjct: 157 MGMGEPLLNIKEIIKAIKIINQD--IGIGQRSLTISTVGIPEKIIEFANHKLQITFAVSL 214 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA + LR L+P ++ Y L LI+ C+ Y ++ R+TFEY++L+ +NDS A+ L Sbjct: 215 HASNQILREKLIPTSKFYTLSSLINDCKKYVEITKR-RLTFEYILLEEVNDSLEQAVELA 273 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K+LKG +NLIP+NP +Y S + I F +++ G ++ IR RGL+ AACG Sbjct: 274 KLLKGFQNHVNLIPYNPIEEVKYKRSSPQRIKAFCYQLEKYGITTSIRYSRGLETHAACG 333 Query: 364 QLKSLSKR 371 QL++ + Sbjct: 334 QLRASYHK 341 >gi|294786945|ref|ZP_06752199.1| radical SAM enzyme, Cfr family [Parascardovia denticolens F0305] gi|315226582|ref|ZP_07868370.1| cfr family radical SAM enzyme [Parascardovia denticolens DSM 10105] gi|294485778|gb|EFG33412.1| radical SAM enzyme, Cfr family [Parascardovia denticolens F0305] gi|315120714|gb|EFT83846.1| cfr family radical SAM enzyme [Parascardovia denticolens DSM 10105] Length = 404 Score = 355 bits (912), Expect = 6e-96, Method: Composition-based stats. Identities = 123/381 (32%), Positives = 185/381 (48%), Gaps = 28/381 (7%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 L+ M +++ + + +G P R Q+ + + D SD + + Sbjct: 38 HLVDMDQDQRVDLMKDLGYPS----FRLKQLGQHYFAHDDVDVASYSDFPSAKAQEVKEA 93 Query: 68 FSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 F + E+ + GT K L + IE+V + SR TLC+SSQVGC + Sbjct: 94 FFPTLITPLLEQEADHGTTIKTLWKLFD-----GSRIESVLMKYPSRTTLCISSQVGCGM 148 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG L RN++A EIL QV A + D E ++SN+V MG Sbjct: 149 ACPFCATGQLGLTRNMSAGEILEQVRYASAQARDGRLGEPT----------RLSNVVFMG 198 Query: 187 MGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISL 243 MGE L N+ + K++ S G S R IT+ST G VP I R+ GE I V LA+SL Sbjct: 199 MGEALGNYRAMMKAIRRISAMPPEGFGISARNITISTVGIVPGIRRLMGEGIPVRLAVSL 258 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA ++LR+ LVP+N+++ ++DA Y ++ R++ EY ++KGIND A L Sbjct: 259 HAPDDELRDELVPMNKRFNTTQVLDAAHDYYLATHR-RVSIEYALMKGINDQAVHARLLA 317 Query: 304 KILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 K L A +N IP NP G ++ S +D F + + +G ++ +R RG DI Sbjct: 318 KRLNRYGDNWAHVNPIPLNPIEGSKWTASKPEDEARFLDILHEAGITATLRDTRGSDING 377 Query: 361 ACGQLKSLSKRIPKVPRQEMQ 381 ACGQL + + + + Q Sbjct: 378 ACGQLAAKEL-VTRAEEELAQ 397 >gi|256824969|ref|YP_003148929.1| ribosomal RNA large subunit methyltransferase N [Kytococcus sedentarius DSM 20547] gi|256688362|gb|ACV06164.1| radical SAM enzyme, Cfr family [Kytococcus sedentarius DSM 20547] Length = 426 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 115/402 (28%), Positives = 181/402 (45%), Gaps = 50/402 (12%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + L + ++A+ G P R +Q+ K + R + M+D+ + R + + Sbjct: 29 QHLADLDPAGRKQAVTDAGWPA----FRANQLSKHYFERYTDEPAAMTDLPKAGREEMVR 84 Query: 67 HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 V + DG T K L R + +E+V + +R TLC+SSQ GC Sbjct: 85 GLMPQLLTPVSVMRADDGATVKTLWRLHDGAL-----VESVLMRYPNRVTLCLSSQAGCG 139 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC--------------------- 164 + C FC TG Q L RNL+ EI+ Q++ A +L D Sbjct: 140 MNCPFCATGQQGLTRNLSTAEIVGQLVAANRMLNDPEAPGLAPPPALAEGQVELGENDAD 199 Query: 165 ------------EDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM--GL 210 ++ + ++ N+V MGMGE L N+ ++ D GL Sbjct: 200 PSLDAGADEVEDASLDTPLAAGGPHRVHNVVFMGMGEALANYRKAVDAVRRMVDPAPAGL 259 Query: 211 SFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 S R IT+ST G VP I + E + LA+SLHA ++LR+ LVPIN+++ ++ +DA Sbjct: 260 GMSARGITMSTVGLVPAIDKFAAEGVAATLALSLHAPDDELRDELVPINKRWKVDEALDA 319 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--KGIP-AKINLIPFNPWPGCEY 326 Y + RR++ EY +++ +ND A L + L +G +N IP NP PG ++ Sbjct: 320 AYRYFE-TTGRRVSIEYALIRDMNDQAWRADLLAEKLNARGRGWVHVNPIPLNPTPGSKW 378 Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 S F E ++ G + +R RG DI ACGQL + Sbjct: 379 TASRPGVEQQFVERLRAGGIPTTVRDTRGSDIDGACGQLAAA 420 >gi|256832241|ref|YP_003160968.1| radical SAM enzyme, Cfr family [Jonesia denitrificans DSM 20603] gi|256685772|gb|ACV08665.1| radical SAM enzyme, Cfr family [Jonesia denitrificans DSM 20603] Length = 376 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 116/374 (31%), Positives = 180/374 (48%), Gaps = 32/374 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 M +E + + ++G H R Q+ + + M+D+ + + L Sbjct: 25 RHFADMTPQERRDVVTELG----HQPFRAKQLETHYFSHLTDNADEMTDLPAQAKSEL-- 78 Query: 67 HFSIIYPEIVDEKIS--CDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + P +V + + DG T K L R ++IE+V + +R TLCVSSQ Sbjct: 79 -VGALMPPLVSKIRTLEADGGATVKTLWRLFD-----GIKIESVLMRYPTRSTLCVSSQA 132 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RNL+ EI+ QV A + IP ++N+ Sbjct: 133 GCGMACPFCATGQMGLTRNLSTAEIVEQVRQAAR---------ALAQGEIPGGATHLNNL 183 Query: 183 VMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVML 239 V MGMGEPL N+ + ++ +A G S R IT+ST G VP I ++ +E + + L Sbjct: 184 VFMGMGEPLANYKALMGAVRQFVAPSPQGFGLSARNITVSTVGLVPAINKLAKEGLPLTL 243 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA ++LR+ LVPIN ++ ++ +DA Y + R++ EY ++K +ND A Sbjct: 244 ALSLHAPDDELRSQLVPINTRWTVDEALDAAYGYYDATGR-RVSIEYALIKDMNDHAWRA 302 Query: 300 LNLIKIL--KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L + L +G +N IP NP PG + SD+ F ++ + IR RG Sbjct: 303 DLLGEKLNARGRGWVHVNPIPLNPTPGSIWTASDRDVEQEFVRRLRSHNIPTTIRDTRGS 362 Query: 357 DILAACGQLKSLSK 370 DI ACGQL + + Sbjct: 363 DIDGACGQLAAEDE 376 >gi|237785746|ref|YP_002906451.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium kroppenstedtii DSM 44385] gi|237758658|gb|ACR17908.1| conserved hypothetical protein [Corynebacterium kroppenstedtii DSM 44385] Length = 394 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 119/370 (32%), Positives = 189/370 (51%), Gaps = 32/370 (8%) Query: 11 GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70 + +E ++A+ +G+P R +Q+ + Y R + M+D+ R + + Sbjct: 45 DLTVDEQKQAVKDLGLPA----FRANQLARHYYGRFEASPETMTDLPAAAREPVQKA--- 97 Query: 71 IYPEIVDEK--ISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 ++PE++ E ISCD TRK L + + +E+V + R TLC+SSQ GC + Sbjct: 98 LFPELMTEVRNISCDQGMTRKTLWKLHDGTL-----LESVLMRYPGRATLCISSQAGCGM 152 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG L RNL+ EI+ QV A + + + ++SN+V MG Sbjct: 153 ACPFCATGQGGLHRNLSTGEIVDQVRAAAAAM---------SRGDVAGGKGRLSNVVFMG 203 Query: 187 MGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MGEPL N+ V ++ +D G S+R +T+S+ G P I R +E + V LA+SL Sbjct: 204 MGEPLANYKRVVSAVRQITDPSPRGFGLSQRNVTVSSVGLAPAIRRFADEGLSVTLAVSL 263 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H ++LR+ LVP+N ++ +E ++DA +Y S R++ EY +++ +ND A L Sbjct: 264 HTPDDELRDSLVPVNNRWSVEEVLDAAAYYADRSGR-RVSIEYALIRDVNDQGWRADLLG 322 Query: 304 KILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 K LK +N+IP NP PG + S ++ F +K G +R RG +I A Sbjct: 323 KKLKKALHSKVHVNVIPLNPTPGSIWDASTKQQQEEFVRRVKTQGVECTVRDTRGQEIAA 382 Query: 361 ACGQLKSLSK 370 ACGQL + K Sbjct: 383 ACGQLAAEEK 392 >gi|303273710|ref|XP_003056208.1| predicted protein [Micromonas pusilla CCMP1545] gi|226462292|gb|EEH59584.1| predicted protein [Micromonas pusilla CCMP1545] Length = 358 Score = 354 bits (908), Expect = 1e-95, Method: Composition-based stats. Identities = 125/378 (33%), Positives = 185/378 (48%), Gaps = 39/378 (10%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRG-IRDFQGMSDISQEVRH- 62 K+ +L+G+ EL+ IG+P R Q+ IY +R + + + R Sbjct: 4 KRFNLLGLTLSELKRFSADIGLPA----YRGKQLRDHIYAGPPVRYIDDLVSLPKATRAA 59 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE----KSRGTLCV 118 LL I + + DG K LLR + IETV IP K R T CV Sbjct: 60 LLAADVHIGRSSVHHVVVDSDGVVKLLLRLGDDKV-----IETVGIPSLERGKDRLTACV 114 Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 SSQVGC + C+FC TG RNL EI+ QVL G ++ Sbjct: 115 SSQVGCPMRCTFCATGKGGFTRNLAPHEIVDQVLSLEEHFG-----------------KR 157 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGV 237 ++N+V MGMGEPL N NV ++ + + + R IT+ST G ++ + + Sbjct: 158 VTNVVFMGMGEPLLNTPNVLRAYTALNTE--IGIGARHITISTVGVRGSLQMLAGARLQS 215 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 LA+SLHA + LR +L+P + YPL L++ C Y ++ RR+TFEY +L GINDS Sbjct: 216 TLAVSLHAPNQSLREVLIPSAKSYPLGELLNDCEQYF-IATGRRVTFEYTLLAGINDSSE 274 Query: 298 DALNLIKIL--KGIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 A+ L ++L K + + +NLIP+NP + D+ + F ++ + IR R Sbjct: 275 QAVELAELLHKKKLASHVNLIPYNPVHDAPDFARPDRATVFKFKNILEEMQVPASIRQSR 334 Query: 355 GLDILAACGQLKSLSKRI 372 GL+ AACGQL+S ++I Sbjct: 335 GLEAAAACGQLRSSFQKI 352 >gi|319948052|ref|ZP_08022226.1| ribosomal RNA large subunit methyltransferase N [Dietzia cinnamea P4] gi|319438291|gb|EFV93237.1| ribosomal RNA large subunit methyltransferase N [Dietzia cinnamea P4] Length = 369 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 123/373 (32%), Positives = 187/373 (50%), Gaps = 28/373 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 L + + A+ +G+P R Q+ + R D + M+D+ ++R Sbjct: 16 LPPRHFADLDSDGRAVAMGDLGVPS----FRGKQLANQYFGRLEADPREMTDLPADLRDR 71 Query: 64 LNQHFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 + Q +S D TRK L + + +E+V + R T+C+SSQ Sbjct: 72 VGQEL-FPPLTTSLRHVSADEGTTRKTLWKLHDGSL-----VESVLMRYPDRATVCISSQ 125 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC + C FC TG L RNL+ EIL QV +A L D IP ++SN Sbjct: 126 AGCGMACPFCATGQGGLQRNLSTAEILEQVRVAARALRD---------GEIPGGPGRLSN 176 Query: 182 IVMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238 +V MGMGEPL N+ V ++ I+ G S+R +T+ST G VP I ++ EE + V Sbjct: 177 VVFMGMGEPLANYKRVLAAVRGIISPPPSGFGLSQRSVTVSTVGVVPAIHKLAEEGLQVT 236 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLH ++LR+ LVP+N ++P+ ++DA RHY + R++ EY +++ +ND Sbjct: 237 LAVSLHTPDDELRDTLVPVNNRWPVTEVMDAARHYADATGR-RVSIEYALIRDVNDQVWR 295 Query: 299 ALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 L ++L G A +NLIP NP PG E+ S + F ++ +G S +R RG Sbjct: 296 GEMLGRLLAQRLGPMAHVNLIPLNPTPGSEWDASPRHQQDAFVAAVRAAGVSCTVRDTRG 355 Query: 356 LDILAACGQLKSL 368 DI AACGQL + Sbjct: 356 SDIDAACGQLAAE 368 >gi|269219614|ref|ZP_06163468.1| radical SAM enzyme, Cfr family [Actinomyces sp. oral taxon 848 str. F0332] gi|269210856|gb|EEZ77196.1| radical SAM enzyme, Cfr family [Actinomyces sp. oral taxon 848 str. F0332] Length = 404 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 119/369 (32%), Positives = 173/369 (46%), Gaps = 27/369 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 E L + E ++ + K G P R Q+ + + D + M+D+ R L Sbjct: 24 EHLADLDVAERKDRVAKAGFPA----FRADQLSRHYFEHFDVDPERMTDLPARGREELVS 79 Query: 67 HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F V + + G T K L R + +ETV + R TLC+SSQ GC Sbjct: 80 TFLPPLLTKVRDLTADRGLTIKSLWRMFDGAM-----VETVLMKYPDRATLCISSQAGCG 134 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG L RNL+A EI+ QV +++N+V M Sbjct: 135 MACPFCATGQGGLTRNLSAGEIVEQV----------RCGMLAAARGDLGEPCRLTNVVFM 184 Query: 186 GMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 GMGEPL N+ V K+L G S R +T+ST G P I ++ E+ + V LAIS Sbjct: 185 GMGEPLANWKQVLKALRRIIEPSPAGFGLSARNVTVSTVGMAPLIEKLAEQGMPVTLAIS 244 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA ++LR+ L+PIN ++ + L+DA R Y + R++ EY +++ +ND A L Sbjct: 245 LHAPDDELRDPLIPINSRFNVGRLLDAARSYFAKTGR-RVSVEYALIRDMNDHKWRAQLL 303 Query: 303 IKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L A +N IP NP PG + S + TF + + +G + IR RG DI Sbjct: 304 ADELNRRGRGWAHVNPIPLNPTPGSIWTASTPEAQNTFVQTLLDAGIPTTIRDTRGSDID 363 Query: 360 AACGQLKSL 368 ACGQL + Sbjct: 364 GACGQLAAE 372 >gi|317506353|ref|ZP_07964165.1| cfr family radical SAM enzyme [Segniliparus rugosus ATCC BAA-974] gi|316255363|gb|EFV14621.1| cfr family radical SAM enzyme [Segniliparus rugosus ATCC BAA-974] Length = 369 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 119/363 (32%), Positives = 177/363 (48%), Gaps = 28/363 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + L + EEL EA+ +G R Q+ + Y R + M+DI R Sbjct: 15 MPPRHLADLAAEELREAVAGLG----EKPFRAQQLARHYYSRLTAEPGVMTDIPAASRGK 70 Query: 64 LNQHFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L + + CDG T K L R + +E+V + R TLCVSSQ Sbjct: 71 LAD-ALLPSLITPARTMGCDGGETVKTLWRLHDGAL-----VESVLMGYADRVTLCVSSQ 124 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC + C FC TG L RNL+ EI+ QV LA + D + R +SN Sbjct: 125 AGCGMACPFCATGQGGLTRNLSTAEIVEQVRLAAAAARD---------GKVAGGPRNLSN 175 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVG-EEIGVM 238 +V MGMGEPL N++ V ++ + GL S+R + +ST G VP I R+ E + V Sbjct: 176 VVFMGMGEPLANYNRVLAAVRRITSPAPDGLGLSQRSVVVSTVGLVPAIKRLAGEGLSVT 235 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLHA ++LR+ LVP+N ++P+ ++ A + Y + R++ EY +++ +ND P Sbjct: 236 LAVSLHAPDDELRDTLVPVNTRWPVAEVLAAAQGYARQTGR-RVSVEYALIREVNDQPWR 294 Query: 299 ALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 A L +L G A +NLIP NP PG ++ S + F ++ G S +R RG Sbjct: 295 ADLLGGLLHQALGPLAHVNLIPLNPTPGSKWDASSPEAQREFVRRVRAKGVSCTVRDTRG 354 Query: 356 LDI 358 +I Sbjct: 355 QEI 357 >gi|184200284|ref|YP_001854491.1| hypothetical protein KRH_06380 [Kocuria rhizophila DC2201] gi|205829780|sp|B2GJ15|RLMN_KOCRD RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|183580514|dbj|BAG28985.1| putative rRNA methyltransferase [Kocuria rhizophila DC2201] Length = 382 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 118/369 (31%), Positives = 177/369 (47%), Gaps = 23/369 (6%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 L +E L G P R SQ+ K + R D M+D+ R L Sbjct: 30 HLADFDMAGRKEFLRAAGYPA----FRASQLSKHYFERFEADPAAMTDLPAGQREELVAK 85 Query: 68 FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + V + + +G T K + R + +E+V + R T+C+SSQ GC + Sbjct: 86 AMPPLLKTVRQLRADEGMTVKSVHRLFDNAM-----VESVLMRYDKRVTMCISSQAGCGM 140 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG L RNL+A EI+ QV+ L D + E +++SNIV MG Sbjct: 141 NCPFCATGQSGLTRNLSAAEIVDQVVQGVRALRDGAVGDPEEA------PQRVSNIVFMG 194 Query: 187 MGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISL 243 MGE L N+ ++ D GL S R +T+ST G VP I + E++ + LA+SL Sbjct: 195 MGEALANYKATMGAVHRIIDPSPEGLGISARGLTMSTVGLVPGIRKFTLEKLPITLALSL 254 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA ++LR+ L+PIN ++ ++ +DA R Y + R++ EY +++ IND A L Sbjct: 255 HAPDDELRDELIPINTRWKVDEALDAARDYYDATGR-RVSIEYALIRDINDQGWRADLLG 313 Query: 304 KILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 + L G +N IP NP PG ++ S F E ++ G + +R RG DI Sbjct: 314 EKLNKRGGGWVHVNPIPLNPTPGSKWTASRPGVEQNFVERLRAHGIPTTVRDTRGSDIDG 373 Query: 361 ACGQLKSLS 369 ACGQL + + Sbjct: 374 ACGQLATEA 382 >gi|108798974|ref|YP_639171.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium sp. MCS] gi|119868089|ref|YP_938041.1| radical SAM protein [Mycobacterium sp. KMS] gi|126434574|ref|YP_001070265.1| radical SAM protein [Mycobacterium sp. JLS] gi|122977121|sp|Q1BAG9|RLMN_MYCSS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829816|sp|A3PXZ7|RLMN_MYCSJ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829817|sp|A1UEJ3|RLMN_MYCSK RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|108769393|gb|ABG08115.1| 23S rRNA m(2)A-2503 methyltransferase [Mycobacterium sp. MCS] gi|119694178|gb|ABL91251.1| 23S rRNA m(2)A-2503 methyltransferase [Mycobacterium sp. KMS] gi|126234374|gb|ABN97774.1| 23S rRNA m(2)A-2503 methyltransferase [Mycobacterium sp. JLS] Length = 374 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 124/353 (35%), Positives = 180/353 (50%), Gaps = 21/353 (5%) Query: 23 KIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISC 82 ++G+P R Q+ Y R D Q M+D+ VR + + V E + Sbjct: 35 ELGLPA----FRAKQLATQYYGRLTADPQQMTDLPAAVREQVAEALFPDLLTAVREIETD 90 Query: 83 DG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141 G TRK L R E+V + R T+C+SSQ GC + C FC TG L RN Sbjct: 91 AGETRKVLWR-----AVDGTTFESVLMRYSDRNTVCISSQAGCGMACPFCATGQGGLQRN 145 Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 L+ EIL QV A L D G EG+ + G ++SNIV MGMGEPL N++ V ++ Sbjct: 146 LSTAEILEQVRAAAVELRDRDG----EGIAPAARGGRLSNIVFMGMGEPLANYNRVIAAV 201 Query: 202 SIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPIN 258 G S R +T+ST G P I ++ +E + V LA+SLHA ++LR+ LVP+N Sbjct: 202 RRIVAPPPDGFGISARSVTVSTVGLAPAIRKLADERLNVTLALSLHAPDDELRDTLVPVN 261 Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP---AKINL 315 ++ + +DA R+Y ++ R++ EY +++ +ND P A L K L G +N+ Sbjct: 262 NRWKVSEALDAARYYADVTGR-RVSIEYALIRDVNDQPWRADLLGKRLHGALGPLVHVNV 320 Query: 316 IPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 IP NP PG E+ S + F ++ G S +R RG +I AACGQL + Sbjct: 321 IPLNPTPGSEWDASPKPAEREFVRRVRERGVSCTVRDTRGREIAAACGQLAAE 373 >gi|194333982|ref|YP_002015842.1| radical SAM enzyme, Cfr family [Prosthecochloris aestuarii DSM 271] gi|254807193|sp|B4S808|RLMN_PROA2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|194311800|gb|ACF46195.1| radical SAM enzyme, Cfr family [Prosthecochloris aestuarii DSM 271] Length = 359 Score = 353 bits (905), Expect = 4e-95, Method: Composition-based stats. Identities = 129/377 (34%), Positives = 198/377 (52%), Gaps = 31/377 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+++ R+ELEE + IG P R R +Q+ +W+Y DF M+ IS+ +R L+ Sbjct: 4 KQNIKRYSRKELEELMQSIGEP----RFRAAQLHRWLYSDRASDFHEMTTISKSLRETLD 59 Query: 66 QHFSIIYPEIVDEK----ISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 + + + + + S D TRK+L++ + +ETV IP + R T+CVS+ Sbjct: 60 RKYFLPQCSMSSTQCVEDSSADSTTRKFLVQLHDQ-----EAVETVLIPAEGRNTVCVST 114 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC L CSFC TG RNL A EI QV L + L ++ Sbjct: 115 QVGCPLHCSFCATGYMGFTRNLNAAEIAEQVFLVQDYLDAIGCGA-------------VT 161 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDS-MGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238 NIV MGMGEPL + V +S+ I SD+ L S+++ITLST G +P I + + Sbjct: 162 NIVYMGMGEPLLALEEVIESVGILSDTTYRLHISQKKITLSTVGLLPEIGMLARSGLTTN 221 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LAISLH+ + R L+P R YPL+ L Y + + +T Y++LK IND+ D Sbjct: 222 LAISLHSADQETRASLMPSARDYPLKELRKTLIQYTSET-GQPVTLVYMLLKEINDTQED 280 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 AL L+++ + KINLI +NP ++ + ++ F + +G + +R G I Sbjct: 281 ALKLVRLARSFLCKINLIDYNPIVNIKFDSAGEQRKNIFIRTLVDAGLNVTVRKSHGSSI 340 Query: 359 LAACGQLKSLSKRIPKV 375 AACGQL +++K++P+ Sbjct: 341 NAACGQL-AINKKLPES 356 >gi|329766407|ref|ZP_08257953.1| radical SAM protein [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137176|gb|EGG41466.1| radical SAM protein [Candidatus Nitrosoarchaeum limnia SFB1] Length = 351 Score = 353 bits (905), Expect = 4e-95, Method: Composition-based stats. Identities = 119/371 (32%), Positives = 194/371 (52%), Gaps = 35/371 (9%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + L ++ EE+E+ ++ +G P R R QI +Y + ++ + + +R L + Sbjct: 2 KDLYRLLPEEMEQMVIDMGQP----RYRADQILYPLYYKFPKNISEIRQLPTMMRDKLAE 57 Query: 67 H-FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKS-------RGTLC 117 + I V +S DG T K LL + +ETV I R T+C Sbjct: 58 EGYVIGSATEVHRVVSEDGDTTKLLL-----NLADGTPVETVLIQYPPSKINGHPRSTIC 112 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 VS+QVGC++ C+FC TG RN+ AEEI+ QV+ L + G+ Sbjct: 113 VSTQVGCAMGCTFCATGQMGFERNIKAEEIVAQVIHFAEL--------------LEKRGQ 158 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IG 236 ++N+V MGMGEPL N+D +++ + + G +R IT+ST G + I ++ EE + Sbjct: 159 HVTNLVFMGMGEPLVNYDETIRAVRLLTHPRGFGIGQRNITISTIGIISGIDKLAEEDLQ 218 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 + LAISLHA ++ LR LVP + ++ LI A + Y + R+TFEY +++G+NDSP Sbjct: 219 IGLAISLHAPNDKLRQKLVPTAGPHSVDDLIAAGKRYFKKTGR-RVTFEYALIEGVNDSP 277 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 A L +L G + +NLIP NP G ++ ++ ++ F + +G + +R +G Sbjct: 278 EIAKELSLLLDGNGSHVNLIPLNPTTG-DFHRPSKRSVLEFERILNIAGVNCTVRVEKGT 336 Query: 357 DILAACGQLKS 367 +I AACGQL++ Sbjct: 337 EISAACGQLRT 347 >gi|87301290|ref|ZP_01084131.1| hypothetical protein WH5701_15431 [Synechococcus sp. WH 5701] gi|87284258|gb|EAQ76211.1| hypothetical protein WH5701_15431 [Synechococcus sp. WH 5701] Length = 362 Score = 353 bits (905), Expect = 4e-95, Method: Composition-based stats. Identities = 118/364 (32%), Positives = 174/364 (47%), Gaps = 42/364 (11%) Query: 19 EALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF------SIIY 72 + G P R Q+ WIY +G R +S + + R L ++ Sbjct: 23 AWAVSQGQPA----FRGRQLHDWIYAKGARRLADISVLPKAWRESLTAEADPAGSDALGR 78 Query: 73 PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132 + ++ DGT K LL + +ETV IP + R T+CVSSQVGC + C FC Sbjct: 79 SRELQRSVASDGTTKLLL-----GTADGLSLETVGIPSRDRLTVCVSSQVGCPMACRFCA 133 Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192 TG L R+L EI+ QVL R ++ R+ S++V MGMGEPL Sbjct: 134 TGKGGLQRSLAVHEIVDQVLCVREVM-----------------ERRPSHVVFMGMGEPLL 176 Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIGVMLAISLHA 245 D+V ++ L ++R+IT+ST G + + E LA+SLHA Sbjct: 177 TIDSVLGAIHCLCTD--LGMAQRQITVSTVGVPSTLPSLAELALERLGRAQFTLAVSLHA 234 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 LR L+P YPLE L+D CR Y ++ R++FEY++L G+ND PR A L + Sbjct: 235 PDQGLREQLIPTAHAYPLEALLDDCRRYVEITGR-RVSFEYILLGGLNDHPRQAAALAAL 293 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L+G + +NLIP+NP ++ + + F + + +R RGLD AACGQL Sbjct: 294 LRGFQSHVNLIPYNPIEEEDFQRPSPERVEAFRRALLERHVAVSVRASRGLDEDAACGQL 353 Query: 366 KSLS 369 + + Sbjct: 354 RRRA 357 >gi|145219757|ref|YP_001130466.1| radical SAM protein [Prosthecochloris vibrioformis DSM 265] gi|205829809|sp|A4SEQ5|RLMN_PROVI RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|145205921|gb|ABP36964.1| 23S rRNA m(2)A-2503 methyltransferase [Chlorobium phaeovibrioides DSM 265] Length = 373 Score = 352 bits (903), Expect = 6e-95, Method: Composition-based stats. Identities = 122/377 (32%), Positives = 184/377 (48%), Gaps = 32/377 (8%) Query: 2 NFLKK--ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59 + + K +++ + ++L L ++ P R QI +W++ F+ M+ +S+ Sbjct: 11 HTMAKTLQNITDLTLQQLTGRLAEMKEPAW----RAKQIHEWLFSHRAESFEEMTTLSKA 66 Query: 60 VRHLLNQHFSIIYPEIVDEKISCDG-----TRKWLLRFPARCIGGPVEIETVYIPEKSRG 114 +R L + F+I PE+ S +G T K LLR P + IETV IP R Sbjct: 67 LRKALEETFAITPPEVEQHDNSTEGACPGPTEKLLLRLPDGAM-----IETVLIPGPGRL 121 Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 T C+SSQ GC+L CSFC TG+ RNLT EI Q S+ + Sbjct: 122 TACLSSQAGCALQCSFCATGSLGFKRNLTPGEITGQANALNSM------------LAASG 169 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIA-SDSMGLSFSKRRITLSTSGFVPNIARVGE 233 +KI+NIV MGMGEPL N NV ++ + S S+R+IT+ST G +P IA++ Sbjct: 170 REQKITNIVFMGMGEPLLNTLNVFDAVETLSTRGYTSSISQRKITISTVGIIPEIAKLAT 229 Query: 234 E-IGVMLAISLHAVSNDLRNILVP-INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291 + LA+SLH+ + R L+P R+YPL+ L HY + +T Y++L+G Sbjct: 230 SGMKTKLAVSLHSAFQEKRESLMPLAARRYPLDELQPVLAHYAKNT-GEPVTLVYMLLEG 288 Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351 +ND+ DA LI+ KINLI +N + + F + + +G +R Sbjct: 289 VNDTLEDARQLIRFASRFFCKINLIDYNSIVNIPFQSVCSETRDRFRDRLLEAGLQVTLR 348 Query: 352 TPRGLDILAACGQLKSL 368 G I AACGQL + Sbjct: 349 KSYGTSIHAACGQLAAK 365 >gi|312898699|ref|ZP_07758089.1| radical SAM enzyme, Cfr family [Megasphaera micronuciformis F0359] gi|310620618|gb|EFQ04188.1| radical SAM enzyme, Cfr family [Megasphaera micronuciformis F0359] Length = 341 Score = 352 bits (903), Expect = 6e-95, Method: Composition-based stats. Identities = 110/361 (30%), Positives = 182/361 (50%), Gaps = 29/361 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 + + + +L++ L++ GI + R QI+ +IY I + M + ++ R +L Sbjct: 3 DIFSITKGQLQDILVEAGI----KKFRADQIFHYIYKENIWSWNEMVLLPKKDREILKGL 58 Query: 68 FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I PE+ D ++S D T K LLR +ETV + ++C+SSQVGC++ Sbjct: 59 LPIYIPEVADRQVSEDKETVKLLLRLQD-----GQTVETVLMKHDYGNSVCLSSQVGCAV 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC + VRNLT E+ Q++ R V ++ ++V+MG Sbjct: 114 NCAFCASAKNGFVRNLTIGEMTAQLMAFRKY-----------------VTSELHSVVLMG 156 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 GEPL N+DNV + + + L R ITLSTSG VP + R+ EE I + LA+SLHA Sbjct: 157 TGEPLLNYDNVLAFIRLIHEKDTLYLGYRNITLSTSGIVPAVYRLAEEGIPLNLAVSLHA 216 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ +R ++PI ++ + ++ A + Y + ++TFEY+++K +N S A L ++ Sbjct: 217 PNDRIRKKIMPIAERFDFDSVVQAAQTYFEKTGR-KVTFEYILIKDVNISDACASQLAQL 275 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +NLIP N + F +KR G ++ +R G +I AACGQL Sbjct: 276 FSHKNVLLNLIPINDNYDVGLYRPSATESERFLTYLKRKGVNATLRREMGSNIQAACGQL 335 Query: 366 K 366 + Sbjct: 336 R 336 >gi|117928743|ref|YP_873294.1| radical SAM protein [Acidothermus cellulolyticus 11B] gi|205829702|sp|A0LV48|RLMN_ACIC1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|117649206|gb|ABK53308.1| 23S rRNA m(2)A-2503 methyltransferase [Acidothermus cellulolyticus 11B] Length = 430 Score = 351 bits (902), Expect = 7e-95, Method: Composition-based stats. Identities = 121/392 (30%), Positives = 181/392 (46%), Gaps = 47/392 (11%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L E + ++G P R QI + R + M+D+ R L Sbjct: 36 RHLADFSLAERRRWVAELGEPS----FRAVQISAHYFGRLTENPDEMTDLPASSRRELVG 91 Query: 67 HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEK-------------- 111 V E +G TRK L R +E+V + Sbjct: 92 VLLPPLLRPVRELACDNGLTRKILWRLSD-----GAYVESVLMRYPPRHSRHAALGAEAD 146 Query: 112 -------SRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC 164 R TLCVSSQ GC + C FC TG LVRNL+A EI+ QV +A Sbjct: 147 ADGGSRHGRVTLCVSSQAGCGMGCPFCATGQAGLVRNLSAAEIVAQVAVAAR-------- 198 Query: 165 EDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTS 222 + + ++SN+V MGMGEPL N+ +V ++ ++ GL S+R +T+ST Sbjct: 199 -TVARGEMAGGPGRLSNVVFMGMGEPLANYRSVVDAVRRITEPPPEGLGISQRSVTVSTV 257 Query: 223 GFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281 G VP I R+ E + V LA+SLHA ++LRN+LVPINR++P+ ++ A Y ++ R Sbjct: 258 GLVPAIERLATEGLAVTLAVSLHAPDDELRNVLVPINRRWPVRDVLGAAARYAEVTKR-R 316 Query: 282 ITFEYVMLKGINDSPRDALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFS 338 ++ EY +++ +ND P A L +K G +NLIP NP PG + S + F Sbjct: 317 VSVEYALIRDVNDQPWRADALAAQVKEFLGRLGHVNLIPLNPTPGSPWTASTPRAQAEFV 376 Query: 339 ECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 + +G + +R RG ++ ACGQL + + Sbjct: 377 RRLAAAGVTVTVRDTRGREVNGACGQLAATVE 408 >gi|307104499|gb|EFN52752.1| hypothetical protein CHLNCDRAFT_36696 [Chlorella variabilis] Length = 336 Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats. Identities = 119/361 (32%), Positives = 182/361 (50%), Gaps = 41/361 (11%) Query: 21 LLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH-FSIIYPEIVDEK 79 + +G P R Q+ G R ++ +S+++R L + + Sbjct: 1 MASMGQPT----YRAKQLRDA----GARSVHDVTTLSKDLRAQLAERGVRTGRSVLHHSV 52 Query: 80 ISCDGTRKWLLRFPARCIGGPVEIETVYIP----EKSRGTLCVSSQVGCSLTCSFCYTGT 135 S DGTRK+LL+ + +E V IP ++ R T+CVSSQVGC + C+FC TG Sbjct: 53 ASPDGTRKFLLQLADGRV-----VEAVGIPADGGDRRRLTVCVSSQVGCPMRCTFCATGK 107 Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195 RNL EI+ QVL + G ++SNIV MGMGEPL N Sbjct: 108 GGFARNLLPHEIVDQVLTVQEEFGQ-----------------RVSNIVFMGMGEPLLNLP 150 Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNIL 254 +V ++ I + +G+ R IT+ST G I R+ ++ LA+S+HA S LR + Sbjct: 151 SVLRAHEILNKDVGVG--ARHITISTVGVPNAIRRMARLQLQSTLAVSIHAPSQALRETI 208 Query: 255 VPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK--GIPAK 312 VP R YPL+ L+ C+ Y LS R+TFEY +L G+ND A L +L+ + + Sbjct: 209 VPSARAYPLDALMADCQEYFRLSGR-RVTFEYTLLAGVNDGVGQAEELAALLRRHDLRSH 267 Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRI 372 +NLIP+NP E+ ++ + F+ +++ G +R RGL+ AACGQL++ ++ Sbjct: 268 VNLIPWNPVDDSEFQRPTRRAVQAFAAALEQRGIPVSVRHTRGLEAAAACGQLRNQHQKT 327 Query: 373 P 373 P Sbjct: 328 P 328 >gi|15842421|ref|NP_337458.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium tuberculosis CDC1551] gi|31794056|ref|NP_856549.1| hypothetical protein Mb2904c [Mycobacterium bovis AF2122/97] gi|121638761|ref|YP_978985.1| hypothetical protein BCG_2901c [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148824069|ref|YP_001288823.1| hypothetical protein TBFG_12894 [Mycobacterium tuberculosis F11] gi|215404854|ref|ZP_03417035.1| hypothetical protein Mtub0_14428 [Mycobacterium tuberculosis 02_1987] gi|215412721|ref|ZP_03421433.1| hypothetical protein Mtub9_15195 [Mycobacterium tuberculosis 94_M4241A] gi|215447142|ref|ZP_03433894.1| hypothetical protein MtubT_14832 [Mycobacterium tuberculosis T85] gi|218754632|ref|ZP_03533428.1| hypothetical protein MtubG1_14859 [Mycobacterium tuberculosis GM 1503] gi|224991253|ref|YP_002645942.1| hypothetical protein JTY_2896 [Mycobacterium bovis BCG str. Tokyo 172] gi|253798032|ref|YP_003031033.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium tuberculosis KZN 1435] gi|254232975|ref|ZP_04926302.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|254365521|ref|ZP_04981566.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|254551949|ref|ZP_05142396.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187898|ref|ZP_05765372.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium tuberculosis CPHL_A] gi|260206195|ref|ZP_05773686.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium tuberculosis K85] gi|289448546|ref|ZP_06438290.1| cfr family radical SAM enzyme [Mycobacterium tuberculosis CPHL_A] gi|289553331|ref|ZP_06442541.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289575585|ref|ZP_06455812.1| cfr family radical SAM enzyme [Mycobacterium tuberculosis K85] gi|289746679|ref|ZP_06506057.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium tuberculosis 02_1987] gi|289763057|ref|ZP_06522435.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|294994027|ref|ZP_06799718.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium tuberculosis 210] gi|297635496|ref|ZP_06953276.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium tuberculosis KZN 4207] gi|297732495|ref|ZP_06961613.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium tuberculosis KZN R506] gi|298526349|ref|ZP_07013758.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|306781073|ref|ZP_07419410.1| hypothetical protein TMBG_03023 [Mycobacterium tuberculosis SUMu002] gi|306785712|ref|ZP_07424034.1| hypothetical protein TMCG_02130 [Mycobacterium tuberculosis SUMu003] gi|306789752|ref|ZP_07428074.1| hypothetical protein TMDG_00071 [Mycobacterium tuberculosis SUMu004] gi|306794566|ref|ZP_07432868.1| hypothetical protein TMEG_02147 [Mycobacterium tuberculosis SUMu005] gi|306798807|ref|ZP_07437109.1| hypothetical protein TMFG_00076 [Mycobacterium tuberculosis SUMu006] gi|306804654|ref|ZP_07441322.1| hypothetical protein TMHG_02085 [Mycobacterium tuberculosis SUMu008] gi|306808847|ref|ZP_07445515.1| hypothetical protein TMGG_02414 [Mycobacterium tuberculosis SUMu007] gi|306968947|ref|ZP_07481608.1| hypothetical protein TMIG_02382 [Mycobacterium tuberculosis SUMu009] gi|313659828|ref|ZP_07816708.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium tuberculosis KZN V2475] gi|61250932|sp|P0A644|RLMN_MYCTU RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|61250933|sp|P0A645|RLMN_MYCBO RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829812|sp|A1KMM4|RLMN_MYCBP RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829852|sp|A5U6N5|RLMN_MYCTA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|254807189|sp|C1AFZ5|RLMN_MYCBT RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|13882723|gb|AAK47272.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551] gi|31619651|emb|CAD96591.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97] gi|121494409|emb|CAL72890.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124602034|gb|EAY61044.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|134151034|gb|EBA43079.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|148722596|gb|ABR07221.1| conserved hypothetical protein [Mycobacterium tuberculosis F11] gi|224774368|dbj|BAH27174.1| hypothetical protein JTY_2896 [Mycobacterium bovis BCG str. Tokyo 172] gi|253319535|gb|ACT24138.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium tuberculosis KZN 1435] gi|289421504|gb|EFD18705.1| cfr family radical SAM enzyme [Mycobacterium tuberculosis CPHL_A] gi|289437963|gb|EFD20456.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289540016|gb|EFD44594.1| cfr family radical SAM enzyme [Mycobacterium tuberculosis K85] gi|289687207|gb|EFD54695.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium tuberculosis 02_1987] gi|289710563|gb|EFD74579.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|298496143|gb|EFI31437.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308326123|gb|EFP14974.1| hypothetical protein TMBG_03023 [Mycobacterium tuberculosis SUMu002] gi|308329626|gb|EFP18477.1| hypothetical protein TMCG_02130 [Mycobacterium tuberculosis SUMu003] gi|308333765|gb|EFP22616.1| hypothetical protein TMDG_00071 [Mycobacterium tuberculosis SUMu004] gi|308337159|gb|EFP26010.1| hypothetical protein TMEG_02147 [Mycobacterium tuberculosis SUMu005] gi|308340969|gb|EFP29820.1| hypothetical protein TMFG_00076 [Mycobacterium tuberculosis SUMu006] gi|308344802|gb|EFP33653.1| hypothetical protein TMGG_02414 [Mycobacterium tuberculosis SUMu007] gi|308348750|gb|EFP37601.1| hypothetical protein TMHG_02085 [Mycobacterium tuberculosis SUMu008] gi|308353451|gb|EFP42302.1| hypothetical protein TMIG_02382 [Mycobacterium tuberculosis SUMu009] gi|323718490|gb|EGB27661.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium tuberculosis CDC1551A] gi|326904495|gb|EGE51428.1| radical SAM protein [Mycobacterium tuberculosis W-148] gi|328457806|gb|AEB03229.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 4207] Length = 364 Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats. Identities = 121/369 (32%), Positives = 179/369 (48%), Gaps = 30/369 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN- 65 L + A+ ++G+P R Q+ Y R I D + M+D+ VR + Sbjct: 17 RHLADLDAAGRASAVAELGLPA----FRAKQLAHQYYGRLIADPRQMTDLPAAVRDRIAG 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + D TRK L R E+V + R T+C+SSQ GC Sbjct: 73 AMFPNLLTASADITCDAGQTRKTLWR-----AVDGTMFESVLMRYPRRNTVCISSQAGCG 127 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG L RNL+ EIL QV + L D G ++SN+V M Sbjct: 128 MACPFCATGQGGLTRNLSTAEILEQVRAGAAALRD-------------DFGDRLSNVVFM 174 Query: 186 GMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242 GMGEPL N+ V ++ + G S R +T+ST G P I + + +GV LA+S Sbjct: 175 GMGEPLANYARVLAAVQRITARPPSGFGISARAVTVSTVGLAPAIRNLADARLGVTLALS 234 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA + LR+ LVP+N ++ + +DA R+Y ++ R++ EY +++ +ND P A L Sbjct: 235 LHAPDDGLRDTLVPVNNRWRISEALDAARYYANVTGR-RVSIEYALIRDVNDQPWRADLL 293 Query: 303 IKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 K L G A +NLIP NP PG ++ S + F + ++ G S +R RG +I Sbjct: 294 GKRLHRVLGPLAHVNLIPLNPTPGSDWDASPKPVEREFVKRVRAKGVSCTVRDTRGREIS 353 Query: 360 AACGQLKSL 368 AACGQL ++ Sbjct: 354 AACGQLAAV 362 >gi|290968497|ref|ZP_06560036.1| radical SAM enzyme, Cfr family [Megasphaera genomosp. type_1 str. 28L] gi|290781493|gb|EFD94082.1| radical SAM enzyme, Cfr family [Megasphaera genomosp. type_1 str. 28L] Length = 345 Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats. Identities = 108/370 (29%), Positives = 179/370 (48%), Gaps = 29/370 (7%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 SL+ EL++ L I + R QI+ ++Y + I ++ M + ++ R L Sbjct: 3 SLLDFTLPELQQFLEAHSI----KKFRAKQIFHYVYKQNITVWEDMVQLPKQDRQKLQNL 58 Query: 68 FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 I P IV S +G T K L++ +ETV + ++C+SSQVGC++ Sbjct: 59 LEIYIPPIVSRLDSANGETVKLLVQL-----ADGQTVETVLMRHNYGNSICLSSQVGCAV 113 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC + VRNLT E+ Q+L R V + ++V+MG Sbjct: 114 NCLFCASAKNGFVRNLTMGEMQAQLLAFRRY-----------------VTTDLHSVVLMG 156 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 GEPL N+DNV + L ++ R +T+ST+G VP I ++ +E I V LA+SLHA Sbjct: 157 TGEPLLNYDNVLRFLRTIHEAYSFYLGYRNMTISTAGIVPQIYKLAQEGIPVNLAVSLHA 216 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +++LR ++PI Y E ++ A HY ++ ++TFEY++++ + +P A L Sbjct: 217 SNHELRRKIMPIADTYAWEDIVRAAFHYFAVTGR-KVTFEYILIRDLTCTPACAEELASR 275 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + IN IP N +++ F + +K+ S +R G +I AACGQL Sbjct: 276 MAHKNVLINAIPINDNYDVGLRRPTLREMQAFVKILKKHHISVTLRREMGSEIQAACGQL 335 Query: 366 KSLSKRIPKV 375 + + + + Sbjct: 336 RIQREAVDRK 345 >gi|215428321|ref|ZP_03426240.1| hypothetical protein MtubT9_18783 [Mycobacterium tuberculosis T92] gi|215431827|ref|ZP_03429746.1| hypothetical protein MtubE_14401 [Mycobacterium tuberculosis EAS054] gi|260202014|ref|ZP_05769505.1| ribosomal RNA large subunit methyltransferase N [Mycobacterium tuberculosis T46] gi|289444435|ref|ZP_06434179.1| cfr family radical SAM enzyme [Mycobacterium tuberculosis T46] gi|289751545|ref|ZP_06510923.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289417354|gb|EFD14594.1| cfr family radical SAM enzyme [Mycobacterium tuberculosis T46] gi|289692132|gb|EFD59561.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] Length = 364 Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 121/369 (32%), Positives = 179/369 (48%), Gaps = 30/369 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN- 65 L + A+ ++G+P R Q+ Y R I D + M+D+ VR + Sbjct: 17 RHLADLDAAGRASAVAELGLPA----FRAKQLAHQYYGRLIADPRQMTDLPAAVRDRIAG 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + D TRK L R E+V + R T+C+SSQ GC Sbjct: 73 AMFPNLLTASADITCDAGQTRKTLWR-----AVDGTMFESVLMRYSRRNTVCISSQAGCG 127 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG L RNL+ EIL QV + L D G ++SN+V M Sbjct: 128 MACPFCATGQGGLTRNLSTAEILEQVRAGAAALRD-------------DFGDRLSNVVFM 174 Query: 186 GMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242 GMGEPL N+ V ++ + G S R +T+ST G P I + + +GV LA+S Sbjct: 175 GMGEPLANYARVLAAVQRITARPPSGFGISARAVTVSTVGLAPAIRNLADARLGVTLALS 234 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA + LR+ LVP+N ++ + +DA R+Y ++ R++ EY +++ +ND P A L Sbjct: 235 LHAPDDGLRDTLVPVNNRWRISEALDAARYYANVTGR-RVSIEYALIRDVNDQPWRADLL 293 Query: 303 IKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 K L G A +NLIP NP PG ++ S + F + ++ G S +R RG +I Sbjct: 294 GKRLHRVLGPLAHVNLIPLNPTPGSDWDASPKPVEREFVKRVRAKGVSCTVRDTRGREIS 353 Query: 360 AACGQLKSL 368 AACGQL ++ Sbjct: 354 AACGQLAAV 362 >gi|219118833|ref|XP_002180183.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217408440|gb|EEC48374.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 378 Score = 350 bits (898), Expect = 3e-94, Method: Composition-based stats. Identities = 126/375 (33%), Positives = 195/375 (52%), Gaps = 26/375 (6%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +L + + ELE ++ G P + R Q++ WI +G+ D M+++ + +R L++ Sbjct: 16 NLSTVTQAELEILMVAWGHP----KYRAQQVYNWIRQQGVTDVALMTNLPKTLRAQLSEF 71 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQVGCSL 126 EI E +S DGT K R IE+V +P K R T C+SSQ GC+ Sbjct: 72 SKPRSLEIAAEMVSKDGTIKRAYR-----CADGQMIESVLMPYKDGRYTACISSQAGCAQ 126 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQV-LLARSLLGDFPGCEDIE---GMVIPSVGRKISNI 182 C FC TG R LTA+EI QV + A L + I+ + ++SN+ Sbjct: 127 GCVFCATGQMGFARQLTADEIFEQVAIFANELQQQKDQQQYIDAGGQEIQHGRATRLSNV 186 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG---EEIGVML 239 V MGMGEPL N+ NV K+++ ++ L R+IT+ST G VPNI ++ + + L Sbjct: 187 VFMGMGEPLANYRNVVKAVNRITND--LGIGARKITVSTVGIVPNIVKLTTDPDMPPIRL 244 Query: 240 AISLHAVSNDLRNILVPINRKYP-LEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 A+SLH S+ R+ L+P NR+Y L+ L+ A R Y + RRIT E+ +++G ND+ Sbjct: 245 AVSLHCASDKERSDLLPANRRYGGLDELMPALRDYIE-TTGRRITLEWALIQGENDNADS 303 Query: 299 ALNLIKI-----LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353 A L + L+ +N+IP NP G E + ++++ F + ++ G + R Sbjct: 304 ARTLASLVQRYGLRRDMVHVNVIPLNPTGGFEGTPTQRQNVNVFVKTLEEHGIACTPRVR 363 Query: 354 RGLDILAACGQLKSL 368 RG+DI A CGQL S Sbjct: 364 RGIDIDAGCGQLTSK 378 >gi|158313018|ref|YP_001505526.1| radical SAM protein [Frankia sp. EAN1pec] gi|205829763|sp|A8L6D8|RLMN_FRASN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|158108423|gb|ABW10620.1| radical SAM enzyme, Cfr family [Frankia sp. EAN1pec] Length = 385 Score = 350 bits (898), Expect = 3e-94, Method: Composition-based stats. Identities = 123/369 (33%), Positives = 182/369 (49%), Gaps = 22/369 (5%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVR--GIRDFQGMSDISQEVRHLL 64 L + R+E +G+P R Q+ + + D M+D+ +R L Sbjct: 23 RHLADLSRDERRAVATSLGLPA----FRADQLARHYFTHHLRADDADLMTDLPASIRPAL 78 Query: 65 NQHFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + + + CDG TRK + R +IE+V + R T+CVSSQ Sbjct: 79 VE-AMLPRLLTPATALDCDGGQTRKTVWRTVD-----GAKIESVLMRYPQRATVCVSSQA 132 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RNL+ EI+ QV+ A + E + SN+ Sbjct: 133 GCGMGCPFCATGQGGLTRNLSTAEIVEQVVDAARTMAARTTAEGGLPGGPGRL----SNV 188 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239 V MGMGEPL N+ + +L D GL S R +T+ST G VP I R+ E + V L Sbjct: 189 VFMGMGEPLANYAALLAALHRLIDPAPDGLGLSARGLTVSTVGLVPAIRRLAGEGLPVTL 248 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA ++LR+ LVPIN ++P+ ++ A Y ++ R++ EY ++ G+NDSP A Sbjct: 249 AVSLHAPDDELRDELVPINTRWPVAEVLAAAWEYARVTGR-RVSIEYALIDGVNDSPERA 307 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L +L G A +NLIP NP G + S + F E ++ G ++ +R RG +I Sbjct: 308 DALAALLVGQLAHVNLIPLNPTGGSSWQASAPRGQRVFVERLRARGVAATVRDTRGREIA 367 Query: 360 AACGQLKSL 368 AACGQL + Sbjct: 368 AACGQLAAE 376 >gi|307638089|gb|ADN80539.1| Ribosomal RNA large subunit methyl transferase N [Helicobacter pylori 908] gi|325996690|gb|ADZ52095.1| Ribosomal RNA large subunit methyltransferase N [Helicobacter pylori 2018] gi|325998282|gb|ADZ50490.1| Ribosomal RNA large subunit methyltransferase N [Helicobacter pylori 2017] Length = 357 Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 128/384 (33%), Positives = 195/384 (50%), Gaps = 45/384 (11%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64 K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L Sbjct: 2 KTSIYDFTLDELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113 Q F++ EI + S DG++K+L + + E V + K + Sbjct: 54 EQEFTLRTIEIAHVRESVDGSKKYLFK----SLRDNHTFEAVLLKMKDKKIDEETNAVLE 109 Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 T+CVS Q+GC + CSFC+T VRNL A EI+ Q LL + Sbjct: 110 GEKHTVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230 K+ NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I Sbjct: 159 ---LPIEKVLNIVFMGMGEPLNNLDEVCKAIEIFNT--GMQISPKRITISTSGVADKIPI 213 Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 + + +GV LAISLHAV + R+ L+P+N+KY +E +++ R +P L +R+ FEY+++ Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLI 272 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349 K +NDS A L+K+L GI +K+NLI FNP G ++ + F++ + G Sbjct: 273 KDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNAKGLLCT 332 Query: 350 IRTPRGLDILAACGQLKSLSKRIP 373 IR + LDI AACGQL+ + Sbjct: 333 IRESKALDIEAACGQLREKKLQQK 356 >gi|303233967|ref|ZP_07320616.1| 23S rRNA m2A2503 methyltransferase [Finegoldia magna BVS033A4] gi|302494892|gb|EFL54649.1| 23S rRNA m2A2503 methyltransferase [Finegoldia magna BVS033A4] Length = 349 Score = 348 bits (894), Expect = 6e-94, Method: Composition-based stats. Identities = 120/373 (32%), Positives = 194/373 (52%), Gaps = 31/373 (8%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 K L M +EL+E + G R Q ++ I+ I + M++ S +R Sbjct: 1 MQNKIILENMTVDELKEFFVNNG----EKPFRALQYFQAIHKNRIFNPNEMTNFSNSLRE 56 Query: 63 LLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 LNQ+ I I+ S D T+K+L+ I +ETV++ K+ ++C+S+Q Sbjct: 57 KLNQYNDIKNCSIIKRIDSKLDNTKKYLIEMSDGNI-----VETVFMQYKTHTSICLSTQ 111 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 +GC + C FC + + VRNL E+ Q+ L + + +I+N Sbjct: 112 IGCKMGCKFCASTKKSFVRNLQPYEMCAQIYLVEN-----------------DLDIRINN 154 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLA 240 IV+MG+GEPL N+DNV + + + +D G S R ITLST G V I R+ ++IG+ + Sbjct: 155 IVLMGIGEPLDNYDNVIRFIDLITDKDGQDMSIRNITLSTCGLVDKIIRLANDDIGINIT 214 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ISLH ++ RN L+PI KY +E ++DAC +Y + RI FEY +++ +NDS + Sbjct: 215 ISLHNPFDNERNKLMPIGNKYSIEEILDACDYYFKKTKR-RIGFEYTVIENVNDSKKYMD 273 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L+ +LK +NLI NP D+ + F E + ++ ++ IR +G+DI Sbjct: 274 KLVSLLKNRNCLLNLITLNPIEEFNQKSPDRYKMTEFMEYMNKNNVNTTIRRKQGIDIDG 333 Query: 361 ACGQLK--SLSKR 371 ACGQL+ +++KR Sbjct: 334 ACGQLRINNMTKR 346 >gi|317181108|dbj|BAJ58894.1| hypothetical protein HPF32_1312 [Helicobacter pylori F32] Length = 357 Score = 348 bits (893), Expect = 8e-94, Method: Composition-based stats. Identities = 128/380 (33%), Positives = 193/380 (50%), Gaps = 45/380 (11%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64 K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L Sbjct: 2 KTSIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113 Q F++ EI + S DG++K+L + + E V++ K + Sbjct: 54 EQEFTLRTIEITHVRESVDGSKKYLFK----SLRDNHTFEAVFLKMKDKKIDGETNAILE 109 Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 T+CVS Q+GC + CSFC+T VRNL A EI+ Q LL + Sbjct: 110 GEKYTVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230 K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNT--GMQISPKRITISTSGVADKIPI 213 Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 + + +GV LAISLHAV + R+ L+P+N+KY +E +++ R +P L +R+ FEY+++ Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLI 272 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349 K +NDS A L+K+L GI +K+NLI FNP G + + F++ + G Sbjct: 273 KDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSNFERPSLESARMFADFLNSKGLLCT 332 Query: 350 IRTPRGLDILAACGQLKSLS 369 IR + LDI AACGQL+ Sbjct: 333 IRESKALDIEAACGQLREKK 352 >gi|284045197|ref|YP_003395537.1| radical SAM enzyme, Cfr family [Conexibacter woesei DSM 14684] gi|283949418|gb|ADB52162.1| radical SAM enzyme, Cfr family [Conexibacter woesei DSM 14684] Length = 329 Score = 348 bits (893), Expect = 8e-94, Method: Composition-based stats. Identities = 122/360 (33%), Positives = 180/360 (50%), Gaps = 36/360 (10%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 M + L+ L + R R Q+W+W RG ++ M+++ +R L + Sbjct: 1 MDLDLLDRTLAD----EDQPRFRAKQVWEWT-ARGAAGYEEMTNLPAALRATLAERVPFS 55 Query: 72 YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQVGCSLTCSF 130 + E + DGT K L +E V + K R +LC+SSQ GC LTC+F Sbjct: 56 SLTLQHEAHASDGTVKALFSTHD-----GRAVEAVLMRYKDGRRSLCLSSQSGCPLTCTF 110 Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 C TGT K RNLTA EIL Q L R + ++ + V MGMGEP Sbjct: 111 CATGTMKFGRNLTASEILDQALHFRRI-------------------EEVDHCVFMGMGEP 151 Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSND 249 + N D+V + + + RR +ST G++P I R+ + E+ + LA+SLHA Sbjct: 152 MMNLDHVLAACRALPS---IGITHRRTAISTVGWIPGIERLTDSEMPIRLALSLHAPDEA 208 Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309 LR+ ++P+N +YPL ++ ACR + + EYVML G+ND AL L ++L+ Sbjct: 209 LRSQIMPVNDRYPLRDVLRACRDFYEKKRRM-VFIEYVMLGGVNDGYAQALQLARLLEPW 267 Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369 K+NLIP+NP Y S ++ I TF ++ G S+ +R RG DI AACGQL + Sbjct: 268 MFKVNLIPYNPT-DSIYDGSSREAIETFRAVLEEHGISATVRLTRGRDIDAACGQLAVKA 326 >gi|317182630|dbj|BAJ60414.1| hypothetical protein HPF57_1340 [Helicobacter pylori F57] Length = 357 Score = 348 bits (893), Expect = 9e-94, Method: Composition-based stats. Identities = 128/380 (33%), Positives = 194/380 (51%), Gaps = 45/380 (11%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64 K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L Sbjct: 2 KTSIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113 Q F++ EI + S DG++K+L + + E V++ K + Sbjct: 54 EQEFTLRTIEITHVRQSVDGSKKYLFK----SLRDNHTFEAVFLKMKDKKIDEETNAILE 109 Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 T+CVS Q+GC + CSFC+T VRNL A EI+ Q LL + Sbjct: 110 GEKYTVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230 K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNA--GMQISPKRITISTSGVADKIPI 213 Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 + + +GV LAISLHAV + R+ L+P+N+KY +E +++ R +P L +R+ FEY+++ Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLI 272 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349 K +NDS A L+K+L GI +K+NLI FNP G ++ + F++ + G Sbjct: 273 KDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCT 332 Query: 350 IRTPRGLDILAACGQLKSLS 369 IR + LDI AACGQL+ Sbjct: 333 IRESKALDIEAACGQLREKK 352 >gi|217034559|ref|ZP_03439968.1| hypothetical protein HP9810_874g16 [Helicobacter pylori 98-10] gi|216942979|gb|EEC22462.1| hypothetical protein HP9810_874g16 [Helicobacter pylori 98-10] Length = 357 Score = 347 bits (891), Expect = 1e-93, Method: Composition-based stats. Identities = 127/380 (33%), Positives = 194/380 (51%), Gaps = 45/380 (11%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64 K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L Sbjct: 2 KTSIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113 Q F++ EI + S DG++K+L + + E V++ + + Sbjct: 54 EQEFTLRTIEITHVRQSVDGSKKYLFK----SLRDNHTFEAVFLKMRDKKIDEETNAILE 109 Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 T+CVS Q+GC + CSFC+T VRNL A EI+ Q LL + Sbjct: 110 GEKYTVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230 K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNA--GMQISPKRITISTSGVADKIPI 213 Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 + + +GV LAISLHAV + R+ L+P+N+KY +E +++ R +P L +R+ FEY+++ Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLI 272 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349 K +NDS A L+K+L GI +K+NLI FNP G ++ + F++ + G Sbjct: 273 KDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCT 332 Query: 350 IRTPRGLDILAACGQLKSLS 369 IR + LDI AACGQL+ Sbjct: 333 IRESKALDIEAACGQLREKK 352 >gi|317010204|gb|ADU80784.1| ribosomal RNA large subunit methyltransferase N [Helicobacter pylori India7] Length = 357 Score = 347 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 127/380 (33%), Positives = 193/380 (50%), Gaps = 45/380 (11%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64 K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L Sbjct: 2 KASIYDFTLDELSQLLK--------PSFRAKQLYLWLYAKYKTSFKEMQNNFSKDFIAYL 53 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113 Q F++ EI + S DG++K+L + + E V + K + Sbjct: 54 EQEFTLRTIEITHVRESVDGSKKYLFK----SLRDNHTFEAVLLKMKDKKIDEETNAILE 109 Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 T+CVS Q+GC + C+FC+T VRNL A EI+ Q LL + Sbjct: 110 GEKYTVCVSCQIGCQVGCAFCFTQKGGFVRNLQASEIIQQALLIKEDNN----------- 158 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230 K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I Sbjct: 159 ---LPLEKALNIVFMGMGEPLNNLDEVCKAIEIFNT--GMQISPKRITISTSGVADKIPI 213 Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 + + +GV LAISLHAV + R+ L+P+N+KY +E +++ R +P L +R+ FEY+++ Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLI 272 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349 K +NDS A L+K+L GI +K+NLI FNP G ++ + F++ + G Sbjct: 273 KDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESAKMFADFLNSKGLLCT 332 Query: 350 IRTPRGLDILAACGQLKSLS 369 IR + LDI AACGQL+ Sbjct: 333 IRESKALDIEAACGQLREKK 352 >gi|308062688|gb|ADO04576.1| ribosomal RNA large subunit methyltransferase N [Helicobacter pylori Cuz20] Length = 357 Score = 347 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 127/380 (33%), Positives = 193/380 (50%), Gaps = 45/380 (11%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64 K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L Sbjct: 2 KASIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113 Q F++ EI + S DG++K+L + + E V + K + Sbjct: 54 EQEFTLRTIEITHVRESVDGSKKYLFK----SLKDNHTFEAVLLKMKDKKIDEETNAILE 109 Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 T+CVS Q+GC + C+FC+T VRNL A EI+ Q LL + Sbjct: 110 GEKYTVCVSCQIGCQVGCTFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230 K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNT--GMQISPKRITISTSGVADKIPI 213 Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 + + +GV LAISLHAV + R+ L+P+N+KY +E +++ R +P L +R+ FEY+++ Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLI 272 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349 K +NDS A L+K+L GI +K+NLI FNP G ++ + F++ + G Sbjct: 273 KDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCT 332 Query: 350 IRTPRGLDILAACGQLKSLS 369 IR + LDI AACGQL+ Sbjct: 333 IRESKALDIEAACGQLREKK 352 >gi|119357341|ref|YP_911985.1| radical SAM protein [Chlorobium phaeobacteroides DSM 266] gi|205829698|sp|A1BGN4|RLMN_CHLPD RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|119354690|gb|ABL65561.1| 23S rRNA m(2)A-2503 methyltransferase [Chlorobium phaeobacteroides DSM 266] Length = 363 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 129/373 (34%), Positives = 189/373 (50%), Gaps = 33/373 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 ++ + R+EL +A+ +G P RT QI +WI+ F+ M+ IS E+R+ L Sbjct: 7 NIKHLSRQELRQAIANLGEPA----YRTRQIHQWIFSHRAATFEEMTTISLELRNKLADQ 62 Query: 68 FSIIYPEIVDEKISCDG-------TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 F I +P + D + DG T K LL +IETV IP ++R T CVSS Sbjct: 63 FRIGFPILADCQ--QDGSANDPFSTVKLLLELDDN-----EKIETVLIPSENRMTACVSS 115 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC L C FC +G RNL+A+EI+ QV + +I+ Sbjct: 116 QVGCPLQCRFCASGQTGFKRNLSADEIIDQVFSLNDFIR------------TKHESNEIT 163 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDS-MGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238 NIV MGMGEPL NF+N+K+S+ + SD + +R+IT+ST G +P I +G+ + Sbjct: 164 NIVFMGMGEPLLNFENLKESIEVLSDQSYKFNLPQRKITISTVGIIPGINELGKSGLKTK 223 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LAISLH+ S + R L+P+ ++ L L Y + +T Y++LKGINDS D Sbjct: 224 LAISLHSASQETRESLIPVASEFSLTQLRKTLSEYTSQT-GEPVTLVYMLLKGINDSVED 282 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L+K + KINLI +N ++ + F + I +G +R G I Sbjct: 283 ARLLVKFSRSFLCKINLIDYNSIINMKFKPVFNETKDMFIQHILDAGIHVTVRKSHGASI 342 Query: 359 LAACGQLKSLSKR 371 AACGQL + + Sbjct: 343 NAACGQLAAKGTQ 355 >gi|217032118|ref|ZP_03437618.1| hypothetical protein HPB128_16g78 [Helicobacter pylori B128] gi|216946266|gb|EEC24874.1| hypothetical protein HPB128_16g78 [Helicobacter pylori B128] Length = 365 Score = 346 bits (889), Expect = 2e-93, Method: Composition-based stats. Identities = 129/388 (33%), Positives = 197/388 (50%), Gaps = 47/388 (12%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64 K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L Sbjct: 2 KASIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113 + F++ EI + S DG++K+L + + E V + K + Sbjct: 54 EREFTLRTIEIAHVRKSVDGSKKYLFK----SLKDNHTFEAVLLKMKDKKIDGETNAVLE 109 Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 T+CVS Q+GC + CSFC+T VRNL A EI+ Q LL + Sbjct: 110 GEKYTVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230 K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I Sbjct: 159 ---LPIEKAFNIVFMGMGEPLNNLDEVCKAIEIFNT--GMQISPKRITISTSGVADKIPI 213 Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 + + +GV LAISLHAV + R+ L+P+N+KY +E +++ R +P L +R+ FEY+++ Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLI 272 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349 K +ND A L+K+L GI +K+NLI FNP G ++ + F++ + G Sbjct: 273 KDLNDGLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCT 332 Query: 350 IRTPRGLDILAACGQLKSL--SKRIPKV 375 IR + LDI AACGQL+ S++I K Sbjct: 333 IRESKALDIEAACGQLREKKLSQQILKT 360 >gi|317179603|dbj|BAJ57391.1| hypothetical protein HPF30_1294 [Helicobacter pylori F30] Length = 357 Score = 346 bits (889), Expect = 2e-93, Method: Composition-based stats. Identities = 127/380 (33%), Positives = 194/380 (51%), Gaps = 45/380 (11%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64 K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L Sbjct: 2 KMSIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113 Q F++ EI + S DG++K+L + + E V++ K + Sbjct: 54 EQEFTLRTIEITHVRESVDGSKKYLFK----SLIDNHTFEAVFLKMKDKKIDGETNAILE 109 Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 T+CVS Q+GC + CSFC+T VRNL A EI+ Q LL + Sbjct: 110 GEKYTVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230 K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNT--GMQISPKRITISTSGVANKIPI 213 Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 + + +GV LAISLHAV + R+ L+P+N+KY +E +++ + +P L +R+ FEY+++ Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVKKWP-LEQRKRVMFEYLLI 272 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349 K +NDS A L+K+L GI +K+NLI FNP G ++ + F++ + G Sbjct: 273 KDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCT 332 Query: 350 IRTPRGLDILAACGQLKSLS 369 IR + LDI AACGQL+ Sbjct: 333 IRESKALDIEAACGQLREKK 352 >gi|308064180|gb|ADO06067.1| ribosomal RNA large subunit methyltransferase N [Helicobacter pylori Sat464] Length = 357 Score = 346 bits (889), Expect = 3e-93, Method: Composition-based stats. Identities = 128/380 (33%), Positives = 193/380 (50%), Gaps = 45/380 (11%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64 K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L Sbjct: 2 KASIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113 Q F++ EI + S DG++K+L + + E V + K + Sbjct: 54 EQEFTLRTIEITHVRESVDGSKKYLFK----SLRDNHTFEAVLLKMKDKKIDEETNAILE 109 Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 T+CVS Q+GC + CSFC+T VRNL A EI+ Q LL + Sbjct: 110 GEKYTVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230 K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNA--GMQISPKRITISTSGVADKIPI 213 Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 + + +GV LAISLHAV + R+ L+P+N+KY +E +++ R +P L +R+ FEY+++ Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLI 272 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349 K +NDS A L+K+L GI +K+NLI FNP G ++ + F++ + G Sbjct: 273 KDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCT 332 Query: 350 IRTPRGLDILAACGQLKSLS 369 IR + LDI AACGQL+ Sbjct: 333 IRESKALDIEAACGQLREKK 352 >gi|261838701|gb|ACX98467.1| hypothetical protein KHP_1277 [Helicobacter pylori 51] Length = 357 Score = 346 bits (889), Expect = 3e-93, Method: Composition-based stats. Identities = 128/380 (33%), Positives = 194/380 (51%), Gaps = 45/380 (11%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64 K S+ +EL + L R Q++ W+Y + FQ M ++ S++ L Sbjct: 2 KASIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFQEMQNNFSKDFIAYL 53 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113 Q F++ EI + S DG++K+L + + E V++ K + Sbjct: 54 EQEFTLRTIEITHVRESVDGSKKYLFK----SLRDNHTFEAVFLKMKDKKIDEETNAILE 109 Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 T+CVS Q+GC + CSFC+T VRNL A EI+ Q LL + Sbjct: 110 SEKYTVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230 K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNT--GMQISPKRITISTSGVADKIPI 213 Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 + + +GV LAISLHAV + R+ L+P+N+KY +E +++ + +P L +R+ FEY+++ Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVKKWP-LEQRKRVMFEYLLI 272 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349 K +NDS A L+K+L GI +K+NLI FNP G ++ + F++ + G Sbjct: 273 KDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCT 332 Query: 350 IRTPRGLDILAACGQLKSLS 369 IR + LDI AACGQL+ Sbjct: 333 IRESKALDIEAACGQLREKK 352 >gi|169824362|ref|YP_001691973.1| putative Fe-S-cluster redox protein [Finegoldia magna ATCC 29328] gi|205829759|sp|B0S143|RLMN_FINM2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|167831167|dbj|BAG08083.1| putative Fe-S-cluster redox protein [Finegoldia magna ATCC 29328] Length = 349 Score = 346 bits (889), Expect = 3e-93, Method: Composition-based stats. Identities = 120/373 (32%), Positives = 194/373 (52%), Gaps = 31/373 (8%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 K L M +EL+E + G R Q ++ I+ I + M++ S +R Sbjct: 1 MQNKIILENMTVDELKEFFVNNG----EKPFRALQYFQAIHKNRIFNPDEMTNFSNSLRG 56 Query: 63 LLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 LNQ+ I I+ S D T+K+L+ I +ETV++ K+ ++C+S+Q Sbjct: 57 KLNQYNDIKNCSIIKRIDSKLDNTKKYLIEMSDGNI-----VETVFMQYKTHTSICLSTQ 111 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 +GC + C FC + + VRNL E+ Q+ L + + +I+N Sbjct: 112 IGCKMGCKFCASTKKSFVRNLQPYEMCAQIYLVEN-----------------DLDIRINN 154 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLA 240 IV+MG+GEPL N+DNV + + + +D G S R ITLST G V I R+ ++IG+ + Sbjct: 155 IVLMGIGEPLDNYDNVSRFIDLITDKDGQDMSIRNITLSTCGLVDKIIRLANDDIGINIT 214 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ISLH ++ RN L+PI KY +E ++DAC +Y + RI FEY +++ +NDS + Sbjct: 215 ISLHNPFDNERNKLMPIGNKYSIEEILDACDYYFKKTKR-RIGFEYTVIENVNDSKKYMD 273 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L+ +LK +NLI NP D+ + F E + ++ ++ IR +G+DI Sbjct: 274 KLVSLLKNRNCLLNLITLNPIEEFNQKSPDRYKMTEFMEYMNKNNVNTTIRRKQGIDIDG 333 Query: 361 ACGQLK--SLSKR 371 ACGQL+ +++KR Sbjct: 334 ACGQLRINNMTKR 346 >gi|109946741|ref|YP_663969.1| ribosomal RNA large subunit methyltransferase N [Helicobacter acinonychis str. Sheeba] gi|123362803|sp|Q17ZF6|RLMN_HELAH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|109713962|emb|CAJ98970.1| conserved hypothetical protein [Helicobacter acinonychis str. Sheeba] Length = 353 Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats. Identities = 128/380 (33%), Positives = 193/380 (50%), Gaps = 45/380 (11%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64 K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L Sbjct: 2 KPSVYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIASL 53 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113 Q F + EI S DG++K+L + + E V++ K + Sbjct: 54 EQEFVLRTIEITHVSHSVDGSKKYLFK----SLKDNHTFEAVFLKMKDKKIDEETNAILE 109 Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 T+CVS Q+GC + CSFC+T VRNL A EI+ Q LL + Sbjct: 110 GEKYTVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230 K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNT--GMQISPKRITISTSGVADKIPI 213 Query: 231 VGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 + E+ +GV LAISLHAV + R+ L+P+N+KY +E +++ + +P L +R+ FEY+++ Sbjct: 214 LAEKNLGVQLAISLHAVDDKTRSSLIPLNKKYNIECVLNEVKKWP-LEQRKRVMFEYLLI 272 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349 K +NDS A L+K+L GI +K+NLI FNP G ++ + F++ + G Sbjct: 273 KNLNDSLNCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCT 332 Query: 350 IRTPRGLDILAACGQLKSLS 369 IR + LDI AACGQL+ Sbjct: 333 IRESKALDIEAACGQLREKK 352 >gi|315585812|gb|ADU40193.1| Fe-S-cluster redox protein [Helicobacter pylori 35A] Length = 357 Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats. Identities = 128/380 (33%), Positives = 194/380 (51%), Gaps = 45/380 (11%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64 K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L Sbjct: 2 KASIYDFTLKELSQLLK--------PSFRAKQLYWWLYAKYKTSFKDMQNNFSKDFIAYL 53 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113 Q F++ EI + S DG++K+L + + E V++ K + Sbjct: 54 EQEFTLRTIEITHVRKSVDGSKKYLFK----SLRDNHTFEAVFLKMKDKKIDEKTNAILE 109 Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 T+CVS Q+GC + CSFC+T VRNL A EI+ Q LL + Sbjct: 110 GEKYTVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230 K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNA--GMQISPKRITISTSGVADKIPI 213 Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 + + +GV LAISLHAV + R+ L+P+N+KY +E +++ R +P L +R+ FEY+++ Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLI 272 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349 K +NDS A L+K+L GI +K+NLI FNP G ++ + F++ + G Sbjct: 273 KDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCT 332 Query: 350 IRTPRGLDILAACGQLKSLS 369 IR + LDI AACGQL+ Sbjct: 333 IRESKALDIEAACGQLREKK 352 >gi|124026587|ref|YP_001015702.1| putative Fe-S-cluster redox protein [Prochlorococcus marinus str. NATL1A] gi|205829803|sp|A2C4M8|RLMN_PROM1 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123961655|gb|ABM76438.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus str. NATL1A] Length = 359 Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats. Identities = 111/366 (30%), Positives = 177/366 (48%), Gaps = 37/366 (10%) Query: 18 EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-NQHFSIIYPEIV 76 EE + G R QI +WIY RG + +S + ++ R L + I + + Sbjct: 22 EEFARQEG----EKSFRGRQIHEWIYQRGAKSLDSISVLPKKWRDSLVRKGIQIGRLDEI 77 Query: 77 DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136 + ++ D T K L+ +ETV IP R T+CVSSQ+GC + C FC TG Sbjct: 78 NRVVAEDETLKLLM-----GTFDGEIVETVGIPTDKRLTVCVSSQIGCPMGCKFCATGKG 132 Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196 L R+L EI+ QV+ R + R+ +++V MGMGEPL N N Sbjct: 133 GLNRSLDVNEIVDQVISVRETM-----------------NRRPTHVVFMGMGEPLLNIQN 175 Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIGVMLAISLHAVSND 249 V S+ + + +R+IT+ST G ++ + + + LA+SLHA + Sbjct: 176 VLDSIECLTSD--IGIGQRKITVSTVGIPNTLSDLAKLAQDRLGRVQFTLAVSLHAPNQT 233 Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309 LR +++P YP+ L+ C+ Y L+ R++FEY++L G+ND A L +++G Sbjct: 234 LRELIIPSASSYPINSLLKDCKKYIDLTGR-RVSFEYILLGGLNDKDIHAEQLANLMRGF 292 Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369 + +NLI +NP + Q + F E ++ G + +R RG D AACGQL+ + Sbjct: 293 QSHVNLIAYNPIAEENFKRPSQSRVNAFRELLENRGVAVSVRASRGRDKDAACGQLRRQT 352 Query: 370 KRIPKV 375 K+ Sbjct: 353 IDKIKI 358 >gi|322435186|ref|YP_004217398.1| radical SAM enzyme, Cfr family [Acidobacterium sp. MP5ACTX9] gi|321162913|gb|ADW68618.1| radical SAM enzyme, Cfr family [Acidobacterium sp. MP5ACTX9] Length = 383 Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats. Identities = 129/378 (34%), Positives = 191/378 (50%), Gaps = 41/378 (10%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN-QH 67 L G+ EL + +G R Q+ +Y + + + ++ + VR L + Sbjct: 22 LFGLSGAELRALVEDMG----ERPFRAKQLIDGLYKQRVGAVEEITTLPIAVRERLAAEG 77 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS--------------R 113 + + PE+ S DGT ++L+R +ETV++P R Sbjct: 78 WVVGLPELAQTAKSVDGTERYLVRL-----ADGETVETVWMPGGDGAELQEGDEGPGYKR 132 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 T+CVSSQVGC++ C FC T + RNLTA EI QV + G G + I Sbjct: 133 ATICVSSQVGCAVNCQFCLTAKLGMRRNLTAGEIAGQVTAVLNRQGIVIGKDRI------ 186 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG- 232 N+V MGMGEP N+D+ ++ + + MG+ S R+T+STSG P I R Sbjct: 187 -------NLVFMGMGEPFLNYDSFMDAVRLLVNEMGIPAS--RMTVSTSGIEPAIRRFAL 237 Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 E I LA+SL+A ++ +R ++PI RK+ +E L+DA + P L +TFEYV+L G+ Sbjct: 238 EPIRPNLALSLNASNDVVRESIMPITRKWDIEALLDAVKSVP-LRRQEYVTFEYVLLGGV 296 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 ND P A ++ +LKG+ AK+NLI +NP PG Y Q+ F + + G + R Sbjct: 297 NDQPEHAREVLALLKGMQAKVNLIVWNPGPGVAYEQPSQEAADAFHKMLVVGGVPAFTRR 356 Query: 353 PRGLDILAACGQLKSLSK 370 PRG DI AACGQLK + Sbjct: 357 PRGRDIYAACGQLKRTVE 374 >gi|224107843|ref|XP_002314621.1| predicted protein [Populus trichocarpa] gi|222863661|gb|EEF00792.1| predicted protein [Populus trichocarpa] Length = 369 Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats. Identities = 134/385 (34%), Positives = 201/385 (52%), Gaps = 48/385 (12%) Query: 19 EALLKIGIPQRHVRMRTSQIWKWIYVRGI--RDFQG---------MSDISQEVRHLLNQH 67 E + G M +WK +Y GI + ++++ +L +H Sbjct: 1 EWVQSYGFRPGQAMM----LWKRLYGNGIWAHHVDELQGILLSHPIYCLNKDFVKMLGEH 56 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSL 126 + + + DGTRK L R + IETV IP ++ R T+CVSSQVGC++ Sbjct: 57 AKFKALSLENILTASDGTRKILFRLDDGLV-----IETVVIPCDRGRTTVCVSSQVGCAM 111 Query: 127 TCSFCYTGT----------QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176 C FC+TG L R+L+ EI+ Q + A+ LL + G Sbjct: 112 NCQFCFTGRQANIFHFGTLMGLKRHLSTAEIIEQAVFAQRLLTNEVG------------- 158 Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236 +N+V MGMGEPL N D+V K+ I GL FS R++T+STSG VP + R E Sbjct: 159 -PFTNVVFMGMGEPLQNIDSVIKAADIMVHDQGLHFSPRKVTVSTSGLVPQLKRFLHESN 217 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 LA+SL+A ++++RN ++PINRKY L +L+ R GL N+ ++ FEYVML+G+NDS Sbjct: 218 CALAVSLNATTDEVRNWIMPINRKYNLGLLLQTLREELGLKNSYKVLFEYVMLEGVNDSD 277 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 DA LI +++GIP KINLI FNP G ++ + + ++ F + + +R +G Sbjct: 278 DDAYRLIDLVQGIPCKINLIQFNPHCGSQFRPTSTEKMIKFRNILAEAKCVVFMRYSKGD 337 Query: 357 DILAACGQL---KSLSKRIPKVPRQ 378 D +AACGQL ++ + +VP Q Sbjct: 338 DQMAACGQLGKPGAIQTPLIRVPEQ 362 >gi|332674192|gb|AEE71009.1| cfr family radical SAM enzyme [Helicobacter pylori 83] Length = 357 Score = 346 bits (888), Expect = 4e-93, Method: Composition-based stats. Identities = 127/380 (33%), Positives = 194/380 (51%), Gaps = 45/380 (11%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64 K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L Sbjct: 2 KASIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113 Q F++ EI + S DG++K+L + + E V++ K + Sbjct: 54 EQEFTLRTIEITHVRESVDGSKKYLFK----SLRDNHTFEAVFLKMKDKKIDEETNAILE 109 Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 T+CVS Q+GC + CSFC+T VRNL A EI+ Q LL + Sbjct: 110 GEKYTVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230 K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNA--GMQISPKRITISTSGVADKIPI 213 Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 + + +GV LAISLHAV + R+ L+P+N+KY +E +++ + +P L +R+ FEY+++ Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVKKWP-LEQRKRVMFEYLLI 272 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349 K +NDS A L+K+L GI +K+NLI FNP G ++ + F++ + G Sbjct: 273 KDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCT 332 Query: 350 IRTPRGLDILAACGQLKSLS 369 IR + LDI AACGQL+ Sbjct: 333 IRESKALDIEAACGQLREKK 352 >gi|297380586|gb|ADI35473.1| radical SAM enzyme, Cfr family [Helicobacter pylori v225d] Length = 357 Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats. Identities = 126/380 (33%), Positives = 193/380 (50%), Gaps = 45/380 (11%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64 K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L Sbjct: 2 KASIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113 Q F++ EI + S DG++K+L + + E V + K + Sbjct: 54 EQEFTLRTIEITHVRESVDGSKKYLFK----SLRDNHTFEAVLLKMKDKKIDGETNAILE 109 Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 T+CVS Q+GC + C+FC+T VRNL A EI+ Q LL + Sbjct: 110 GEKYTVCVSCQIGCQVGCAFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230 K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNA--GMQISPKRITISTSGVADKIPI 213 Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 + + +GV LAISLHAV + R+ L+P+N+KY +E +++ + +P L +R+ FEY+++ Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVKKWP-LEQHKRVMFEYLLI 272 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349 K +NDS A L+K+L GI +K+NLI FNP G ++ + F++ + G Sbjct: 273 KDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCT 332 Query: 350 IRTPRGLDILAACGQLKSLS 369 IR + LDI AACGQL+ Sbjct: 333 IRESKALDIEAACGQLREKK 352 >gi|298735612|ref|YP_003728137.1| ribosomal RNA large subunit methyltransferase N [Helicobacter pylori B8] gi|298354801|emb|CBI65673.1| Ribosomal RNA large subunit methyltransferase N [Helicobacter pylori B8] Length = 357 Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats. Identities = 126/380 (33%), Positives = 192/380 (50%), Gaps = 45/380 (11%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64 K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L Sbjct: 2 KASIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113 + F++ EI + S DG++K+L + + E V + K + Sbjct: 54 EREFTLRTIEIAHVRKSVDGSKKYLFK----SLKDNHTFEAVLLKMKDKKIDGETNAVLE 109 Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 T+CVS Q+GC + CSFC+T VRNL A EI+ Q LL + Sbjct: 110 GEKYTVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230 K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I Sbjct: 159 ---LPIEKAFNIVFMGMGEPLNNLDEVCKAIEIFNT--GMQISPKRITISTSGVADKIPI 213 Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 + + +GV LAISLHAV + R+ L+P+N+KY +E +++ R +P L +R+ FEY+++ Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLI 272 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349 K +ND A L+K+L GI +K+NLI FNP G ++ + F++ + G Sbjct: 273 KDLNDGLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCT 332 Query: 350 IRTPRGLDILAACGQLKSLS 369 IR + LDI AACGQL+ Sbjct: 333 IRESKALDIEAACGQLREKK 352 >gi|108563778|ref|YP_628094.1| ribosomal RNA large subunit methyltransferase N [Helicobacter pylori HPAG1] gi|123246875|sp|Q1CRK2|RLMN_HELPH RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|107837551|gb|ABF85420.1| hypothetical protein HPAG1_1353 [Helicobacter pylori HPAG1] Length = 357 Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats. Identities = 128/380 (33%), Positives = 193/380 (50%), Gaps = 45/380 (11%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64 K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L Sbjct: 2 KASIYDFTLDELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113 + F++ EI + S DG++K+L + + E V + K + Sbjct: 54 EREFTLRTIEITHVRKSVDGSKKYLFK----SLRDNHTFEAVLLKMKDKKIDEKTNAILE 109 Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 T+CVS Q+GC + CSFC+T VRNL A EI+ Q LL + Sbjct: 110 GEKYTVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230 K NIV MGMGEPL N D V K++ I + G+ S RRIT+STSG I Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNT--GMQISPRRITVSTSGVADKIPI 213 Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 + + +GV LAISLHAV + R+ L+P+N+KY +E +++ R +P L +R+ FEY+++ Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLI 272 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349 K +NDS A L+K+L GI +K+NLI FNP G ++ + F++ + G Sbjct: 273 KDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCT 332 Query: 350 IRTPRGLDILAACGQLKSLS 369 IR + LDI AACGQL+ Sbjct: 333 IRESKALDIEAACGQLREKK 352 >gi|317013192|gb|ADU83800.1| ribosomal RNA large subunit methyltransferase N [Helicobacter pylori Lithuania75] Length = 357 Score = 346 bits (887), Expect = 5e-93, Method: Composition-based stats. Identities = 127/380 (33%), Positives = 193/380 (50%), Gaps = 45/380 (11%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64 K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L Sbjct: 2 KASIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113 Q F++ EI + S DG++K+L + + E V + K + Sbjct: 54 EQEFTLRTIEIAHVRKSVDGSKKYLFK----SLRDNHTFEAVLLKMKDKKIDKETNAILE 109 Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 T+CVS Q+GC + C+FC+T VRNL A EI+ Q LL + Sbjct: 110 GEKYTVCVSCQIGCQVGCAFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230 K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNT--GMQISPKRITISTSGVADKIPI 213 Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 + + +GV LAISLHAV + R+ L+P+N+KY +E +++ R +P L +R+ FEY+++ Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLI 272 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349 K +NDS A L+K+L GI +K+NLI FNP G ++ + F++ + G Sbjct: 273 KDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNAKGLLCT 332 Query: 350 IRTPRGLDILAACGQLKSLS 369 IR + LDI AACGQL+ Sbjct: 333 IRESKALDIEAACGQLREKK 352 >gi|261414747|ref|YP_003248430.1| radical SAM enzyme, Cfr family [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371203|gb|ACX73948.1| radical SAM enzyme, Cfr family [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327425|gb|ADL26626.1| 23S rRNA m2A2503 methyltransferase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 357 Score = 346 bits (887), Expect = 5e-93, Method: Composition-based stats. Identities = 112/365 (30%), Positives = 187/365 (51%), Gaps = 17/365 (4%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++ + +EL+ L + R QI KW++ + +R + M +IS +R + + Sbjct: 5 RNIKTLTTDELKAWLRDV----DEKPYRADQIQKWLFCQQVRSYDEMVNISPALREKMAK 60 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 F++ + +S DGT KWL IETV IP R ++CVS+QVGC++ Sbjct: 61 QFTLCGLKEDQRSVSVDGTVKWLFETED-----GHHIETVMIPANGRYSVCVSTQVGCAM 115 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC T RNL A EIL +++ L D + G+ +++NI+ MG Sbjct: 116 NCAFCRTAKMGFTRNLEAGEILEEIINVNWYLKDNGFMNEEGGVA------QVTNIIFMG 169 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 MGEPL N +NV + + + +R+T+STSG VP I + + LA+SL++ Sbjct: 170 MGEPLNNLENVHRVCCTLHNQKLFNMGAKRMTVSTSGVVPKIKELVDRNTPCCLAVSLNS 229 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +N+ R+ ++P+N+ +P+E L++A Y ++ +TFE+V+++ I +P+ A LI+I Sbjct: 230 TNNEYRSSVMPVNKTWPIEKLLEAVDEYIRRTDNY-VTFEFVLIQNITCTPKAAKELIRI 288 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 K+N I N +++ F ++ + IR PRG DILAACGQL Sbjct: 289 CAPRRVKVNAIVLNDGDDPTLHAPTPEEVEDFLAAVRAAEIQITIRNPRGRDILAACGQL 348 Query: 366 KSLSK 370 + Sbjct: 349 AYKKE 353 >gi|308185186|ref|YP_003929319.1| ribosomal RNA large subunit methyltransferase N [Helicobacter pylori SJM180] gi|308061106|gb|ADO03002.1| ribosomal RNA large subunit methyltransferase N [Helicobacter pylori SJM180] Length = 357 Score = 346 bits (887), Expect = 5e-93, Method: Composition-based stats. Identities = 127/380 (33%), Positives = 193/380 (50%), Gaps = 45/380 (11%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64 K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L Sbjct: 2 KASIYDFTLDELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113 + F++ EI + S DG++K+L + + E V + K + Sbjct: 54 EREFTLRTIEITHVRESVDGSKKYLFK----SLRDNHTFEAVLLKMKDKKIDEETNAILE 109 Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 T+CVS Q+GC + CSFC+T VRNL A EI+ Q LL + Sbjct: 110 GEKYTVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230 K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNT--GMQISPKRITISTSGVADKIPI 213 Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 + + +GV LAISLHAV + R+ L+P+N+KY +E +++ R +P L +R+ FEY+++ Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLI 272 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349 K +NDS A L+K+L GI +K+NLI FNP G ++ + F++ + G Sbjct: 273 KDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCT 332 Query: 350 IRTPRGLDILAACGQLKSLS 369 IR + LDI AACGQL+ Sbjct: 333 IRESKALDIEAACGQLREKK 352 >gi|188528191|ref|YP_001910878.1| hypothetical protein HPSH_07275 [Helicobacter pylori Shi470] gi|205829774|sp|B2UVG6|RLMN_HELPS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|188144431|gb|ACD48848.1| hypothetical protein HPSH_07275 [Helicobacter pylori Shi470] Length = 357 Score = 345 bits (886), Expect = 5e-93, Method: Composition-based stats. Identities = 127/380 (33%), Positives = 193/380 (50%), Gaps = 45/380 (11%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64 K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L Sbjct: 2 KASIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113 Q F++ EI + S DG++K+L + + E V + K + Sbjct: 54 EQEFTLRTIEITHVRESVDGSKKYLFK----SLRDNHTFEAVLLKMKDKKIDEETNAILE 109 Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 T+CVS Q+GC + C+FC+T VRNL A EI+ Q LL + Sbjct: 110 GEKYTVCVSCQIGCQVGCAFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230 K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNT--GMQISPKRITISTSGVADEIPI 213 Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 + + +GV LAISLHAV + R+ L+P+N+KY +E +++ R +P L +R+ FEY+++ Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLI 272 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349 K +NDS A L+K+L GI +K+NLI FNP G ++ + F++ + G Sbjct: 273 KDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCT 332 Query: 350 IRTPRGLDILAACGQLKSLS 369 IR + LDI AACGQL+ Sbjct: 333 IRESKALDIEAACGQLREKK 352 >gi|261840101|gb|ACX99866.1| hypothetical protein HPKB_1325 [Helicobacter pylori 52] Length = 357 Score = 345 bits (886), Expect = 6e-93, Method: Composition-based stats. Identities = 127/380 (33%), Positives = 194/380 (51%), Gaps = 45/380 (11%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64 K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L Sbjct: 2 KMSIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113 Q F++ EI + S DG++K+L + + E V++ + + Sbjct: 54 EQEFTLRTIEITHVRESIDGSKKYLFK----SLRDNHTFEAVFLKMRDKKIDEETNAILE 109 Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 T+CVS Q+GC + CSFC+T VRNL A EI+ Q LL + Sbjct: 110 GEKYTVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230 K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNT--GMQISPKRITISTSGVADKIPI 213 Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 + + +GV LAISLHAV + R+ L+P+N+KY +E +++ R +P L +R+ FEY+++ Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLI 272 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349 K +NDS A L+K+L GI +K+NLI FNP G ++ + F++ + G Sbjct: 273 KDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCT 332 Query: 350 IRTPRGLDILAACGQLKSLS 369 IR + LDI AACGQL+ Sbjct: 333 IRESKALDIEAACGQLREKK 352 >gi|72382850|ref|YP_292205.1| ribosomal RNA large subunit methyltransferase N [Prochlorococcus marinus str. NATL2A] gi|123746249|sp|Q46J26|RLMN_PROMT RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|72002700|gb|AAZ58502.1| 23S rRNA m(2)A-2503 methyltransferase [Prochlorococcus marinus str. NATL2A] Length = 359 Score = 345 bits (886), Expect = 6e-93, Method: Composition-based stats. Identities = 111/366 (30%), Positives = 176/366 (48%), Gaps = 37/366 (10%) Query: 18 EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-NQHFSIIYPEIV 76 EE + G R QI +WIY RG + +S + ++ R L + I + + Sbjct: 22 EEFARQEG----EKSFRGRQIHEWIYQRGAKSLDSISVLPKKWRDSLVRKGIQIGRLDEI 77 Query: 77 DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136 + ++ D T K L+ +ETV IP R T+CVSSQ+GC + C FC TG Sbjct: 78 NRVVAEDETLKLLM-----GTFDGEIVETVGIPTDKRLTVCVSSQIGCPMGCKFCATGKG 132 Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196 L R+L EI+ QV+ R + R+ +++V MGMGEPL N N Sbjct: 133 GLNRSLDVNEIVDQVISVRETM-----------------NRRPTHVVFMGMGEPLLNIRN 175 Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-------VMLAISLHAVSND 249 V S+ + + +R+IT+ST G ++ + + LA+SLHA + Sbjct: 176 VLDSIECLTSD--IGIGQRKITVSTVGIPNTLSDLAKLAQDRLGRVKFTLAVSLHAPNQT 233 Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309 LR +++P YP+ L+ C+ Y L+ R++FEY++L G+ND A L +++G Sbjct: 234 LRELIIPSASSYPINSLLKDCKKYIELTGR-RVSFEYILLGGLNDKDIHAEQLANLMRGF 292 Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369 + +NLI +NP + Q + F E ++ G + +R RG D AACGQL+ + Sbjct: 293 QSHVNLIAYNPIAEENFKRPSQSRVNAFRELLENRGVAVSVRASRGRDKDAACGQLRRQT 352 Query: 370 KRIPKV 375 K+ Sbjct: 353 IDKIKI 358 >gi|330685493|gb|EGG97146.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus epidermidis VCU121] Length = 278 Score = 345 bits (885), Expect = 7e-93, Method: Composition-based stats. Identities = 103/302 (34%), Positives = 166/302 (54%), Gaps = 25/302 (8%) Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76 ++ L++ G + R QI++W+Y + + M+++S+++R LL +F++ V Sbjct: 1 MQNWLIEHG----QQKFRAKQIFEWLYQKRVDSIDEMTNLSKDLRQLLKDNFAMTTLTTV 56 Query: 77 DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136 ++ S DGT K+L IETV + + ++CV++QVGC + C+FC + Sbjct: 57 VKQESRDGTIKFLFELQD-----GYTIETVLMRHEYGNSVCVTTQVGCRIGCTFCASTLG 111 Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196 L RNL A EI+ QVL + L + ++S IV+MG+GEP N+D Sbjct: 112 GLKRNLEAGEIVSQVLTVQKALDE--------------TEERVSQIVIMGIGEPFENYDE 157 Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILV 255 + L I +D L+ R IT+STSG +P I EE I + A+SLH +++R+ L+ Sbjct: 158 MMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVSLHGAKDEVRSRLM 217 Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINL 315 PINR Y +E L++A +Y +N RITFEY + G+ND A +L ++KG+ +NL Sbjct: 218 PINRAYNVEKLMEAIEYYQEKTNR-RITFEYGLFGGVNDQLEHARDLAHLIKGLNCHVNL 276 Query: 316 IP 317 IP Sbjct: 277 IP 278 >gi|302380492|ref|ZP_07268957.1| 23S rRNA m2A2503 methyltransferase [Finegoldia magna ACS-171-V-Col3] gi|302311435|gb|EFK93451.1| 23S rRNA m2A2503 methyltransferase [Finegoldia magna ACS-171-V-Col3] Length = 349 Score = 345 bits (885), Expect = 7e-93, Method: Composition-based stats. Identities = 120/373 (32%), Positives = 194/373 (52%), Gaps = 31/373 (8%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 K L M +EL+E + G R Q ++ I+ I + M++ S +R Sbjct: 1 MQNKIILENMTVDELKEFFVNNG----EKPFRALQYFQAIHKNRIFNPDDMTNFSNNLRG 56 Query: 63 LLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 LNQ+ I I+ S D T+K+L+ I +ETV++ K+ ++C+S+Q Sbjct: 57 KLNQYNDIKNCSIIKRINSKLDNTKKYLIEMSDGNI-----VETVFMQYKTHTSICLSTQ 111 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 +GC + C FC + + VRNL E+ Q+ L + + +I+N Sbjct: 112 IGCKMGCKFCASTKKSFVRNLQPYEMCAQIYLVEN-----------------DLDIRINN 154 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240 IV+MG+GEPL N+DNV + + + +D G S R ITLST G V I R+ ++ IG+ + Sbjct: 155 IVLMGIGEPLDNYDNVSRFIDLITDKDGQDMSIRNITLSTCGLVDKIIRLADDDIGINIT 214 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ISLH ++ RN L+PI KY +E ++DAC +Y + RI FEY +++ +NDS + Sbjct: 215 ISLHNPFDNERNKLMPIGNKYSIEEILDACDYYFKKTKR-RIGFEYTVIENVNDSKKYMD 273 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L+ +LK +NLI NP D+ + F E + ++ ++ IR +G+DI Sbjct: 274 KLVSLLKNRNCLLNLITLNPIEEFNQKSPDRFKMTEFMEYMNKNNVNTTIRRKQGIDIDG 333 Query: 361 ACGQLK--SLSKR 371 ACGQL+ +++KR Sbjct: 334 ACGQLRINNMTKR 346 >gi|24213541|ref|NP_711022.1| ribosomal RNA large subunit methyltransferase N [Leptospira interrogans serovar Lai str. 56601] gi|81589793|sp|Q8F7V1|RLMN_LEPIN RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|24194325|gb|AAN48040.1| predicted Fe-S-cluster redox enzyme [Leptospira interrogans serovar Lai str. 56601] Length = 353 Score = 345 bits (885), Expect = 7e-93, Method: Composition-based stats. Identities = 122/371 (32%), Positives = 181/371 (48%), Gaps = 29/371 (7%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 N +K L G +EL E ++ +G R QI+ +YV + + S+ + Sbjct: 9 NQTEKIPLKGRTLKELSEIMITLG----EKPFRAKQIYHGLYVNRYETWDQFTTFSKIFK 64 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS--RGTLCVS 119 L + S+ + ++V + S DGT+K+ + G E E V+IP R T+C+S Sbjct: 65 EKLEELCSLTHLQVVKQLKSVDGTQKFTFTSES---GNGKEFEAVWIPSGDGGRKTICIS 121 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 SQ+GC+L C FC T + NL A EI+ Q+L ++GD K Sbjct: 122 SQIGCTLNCKFCATAKLEFQGNLKAHEIVDQILQVEKIVGD-----------------KA 164 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVM 238 +N+V MGMGEPL N+ NV ++ SI D + +RIT+STSG V I R E + Sbjct: 165 TNVVFMGMGEPLHNYFNVIRAASIFHDPDAFNLGAKRITISTSGVVNGIRRFIENKEPYN 224 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 AISL+ R ++ I K+ L L+ A + + RRITFEYVM+ G+N + Sbjct: 225 FAISLNHPDPKGRLQIMDIEEKFSLPELLQAAKDF-TRELKRRITFEYVMIPGVNMGFEN 283 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L+KI K + KIN+IP N + +++I F ++ +G R G DI Sbjct: 284 ANKLVKIAKSLDCKINVIPLN-TEFFGWRRPTREEIAEFIALLEPAGVPILNRRSPGKDI 342 Query: 359 LAACGQLKSLS 369 ACG L S S Sbjct: 343 FGACGMLASKS 353 >gi|15612390|ref|NP_224043.1| ribosomal RNA large subunit methyltransferase N [Helicobacter pylori J99] gi|11387372|sp|Q9ZJI4|RLMN_HELPJ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|4155932|gb|AAD06899.1| putative [Helicobacter pylori J99] Length = 357 Score = 345 bits (885), Expect = 8e-93, Method: Composition-based stats. Identities = 127/384 (33%), Positives = 194/384 (50%), Gaps = 45/384 (11%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64 K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L Sbjct: 2 KASIYDFTLDELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113 Q F++ EI + S DG++K+L + + E V + K + Sbjct: 54 EQEFTLRTIEIAHVRESVDGSKKYLFK----SLRDNHTFEAVLLKMKDKKIDEETNAVLE 109 Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 T+CVS Q+GC + CSFC+T VR+L A EI+ Q LL + Sbjct: 110 GEKYTVCVSCQIGCQVGCSFCFTQKGGFVRDLKASEIIQQALLIKEANN----------- 158 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230 K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAVEIFNT--GMQISPKRITISTSGVADKIPI 213 Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 + + +GV LAISLHAV + R+ L+P+N+KY +E +++ R +P L +R+ FEY+++ Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLI 272 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349 K +NDS A L+K+L GI +K+NLI FNP G ++ + F++ + G Sbjct: 273 KDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNAKGLLCT 332 Query: 350 IRTPRGLDILAACGQLKSLSKRIP 373 IR + LDI AACGQL+ + Sbjct: 333 IRESKALDIEAACGQLREKKLQQK 356 >gi|281356702|ref|ZP_06243193.1| radical SAM enzyme, Cfr family [Victivallis vadensis ATCC BAA-548] gi|281316829|gb|EFB00852.1| radical SAM enzyme, Cfr family [Victivallis vadensis ATCC BAA-548] Length = 344 Score = 345 bits (885), Expect = 8e-93, Method: Composition-based stats. Identities = 124/368 (33%), Positives = 182/368 (49%), Gaps = 29/368 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + + L+G L E +P R +QI W+Y +GI + + M+++ VR L Sbjct: 1 MSRPFLVGTSPAVLREWAKSHDLPA----FRGTQIADWVYKKGIVEPERMNNLPLPVREL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + F + + S DGT K LL IE V IP + R T C+S+QVG Sbjct: 57 IGNEFLAPGTAVTETAGSGDGTEKLLLTLQD-----GETIEMVLIPAEERLTFCLSTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC +G L+RNL A EIL + LL GR+ N+V Sbjct: 112 CPVQCRFCASGRDGLIRNLAAGEILEEFLL-----------------GCSRAGRRPDNLV 154 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242 MG+GE L NF + +L + S G S RRIT+STSG+VP + + E E LAIS Sbjct: 155 FMGIGEGLLNFRELAATLEVLSSPEGFGMSPRRITVSTSGYVPGMLKFAELEREFTLAIS 214 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA ++ R+ L+P +YP+ ++ A Y + +T EY +L+G ND+P A L Sbjct: 215 LHAPDDETRSRLIPDKLRYPVAEIMAAADLYLRKAGRM-VTLEYTLLEGFNDTPPHARAL 273 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + K+NLIP+N G E+ ++ I F E + +G +R RG +AAC Sbjct: 274 GALAVRHRCKVNLIPYNST-GGEFRRPSRQAIREFEETVAAAGAHVTVRVERGAKSVAAC 332 Query: 363 GQLKSLSK 370 GQL++ +K Sbjct: 333 GQLRTRAK 340 >gi|254779939|ref|YP_003058046.1| ribosomal RNA large subunit methyltransferase N [Helicobacter pylori B38] gi|254001852|emb|CAX30102.1| Conserved hypothetical protein [Helicobacter pylori B38] Length = 357 Score = 345 bits (885), Expect = 8e-93, Method: Composition-based stats. Identities = 126/380 (33%), Positives = 193/380 (50%), Gaps = 45/380 (11%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64 K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L Sbjct: 2 KASIYDFTLDELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113 + F++ EI + S DG++K+L + + E V + K + Sbjct: 54 EREFTLRTIEITHVRESVDGSKKYLFK----SLRDNHTFEAVLLKMKDKKIDAETNAILE 109 Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 T+CVS Q+GC + C+FC+T VRNL A EI+ Q LL + Sbjct: 110 GEKYTVCVSCQIGCQVGCAFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230 K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAVEIFNT--GMQISPKRITISTSGVADKIPI 213 Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 + + +GV LAISLHAV + R+ L+P+N+KY +E +++ R +P L +R+ FEY+++ Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLI 272 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349 K +NDS A L+K+L GI +K+NLI FNP G ++ + F++ + G Sbjct: 273 KDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCT 332 Query: 350 IRTPRGLDILAACGQLKSLS 369 IR + LDI AACGQL+ Sbjct: 333 IRESKALDIEAACGQLREKK 352 >gi|317178131|dbj|BAJ55920.1| hypothetical protein HPF16_1323 [Helicobacter pylori F16] Length = 357 Score = 344 bits (884), Expect = 9e-93, Method: Composition-based stats. Identities = 125/380 (32%), Positives = 194/380 (51%), Gaps = 45/380 (11%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64 K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L Sbjct: 2 KMSIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113 Q F++ EI + S DG++K+L + + E V++ + + Sbjct: 54 EQEFTLRTIEITHVRESVDGSKKYLFK----SLRDNHTFEAVFLKMRDKKIDGETNAILE 109 Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 T+CVS Q+GC + C+FC+T +RNL A EI+ Q LL + Sbjct: 110 GEKYTVCVSCQIGCQVGCAFCFTQKGGFIRNLKASEIIQQALLIKEDNN----------- 158 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230 K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNA--GMQISPKRITISTSGVADKIPI 213 Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 + + +GV LAISLHAV + R+ L+P+N+KY +E +++ R +P L +R+ FEY+++ Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLIPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLI 272 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349 K +NDS A L+K+L GI +K+NLI FNP G ++ + F++ + G Sbjct: 273 KDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCT 332 Query: 350 IRTPRGLDILAACGQLKSLS 369 IR + LDI AACGQL+ Sbjct: 333 IRESKALDIEAACGQLREKK 352 >gi|256827808|ref|YP_003151767.1| radical SAM enzyme, Cfr family [Cryptobacterium curtum DSM 15641] gi|256583951|gb|ACU95085.1| radical SAM enzyme, Cfr family [Cryptobacterium curtum DSM 15641] Length = 351 Score = 344 bits (884), Expect = 9e-93, Method: Composition-based stats. Identities = 123/382 (32%), Positives = 184/382 (48%), Gaps = 42/382 (10%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MN S+ E L +L + G+P R QI +W+Y RG + M+D+ + Sbjct: 1 MNT----SIDAYSLERLTSSLTEQGLPA----FRARQIIRWVYERGTLSYGEMTDLPLSL 52 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK--------S 112 R L P I+D +IS DG RK++L F E+ETV IP + Sbjct: 53 RKSLAHQMPFAPPRIIDRQISRDGARKYVLAFSDNA-----EVETVAIPSRTKTAEGTPE 107 Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172 T+C S+QVGC + CSFC TGT+ L R+L E++ Q+L + Sbjct: 108 HLTVCFSTQVGCPMACSFCATGTEGLTRSLLPGEMVQQLLTVQR---------------- 151 Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232 + ++S+ V MG GEP N+DN+ +L I ++ L R IT+ST G + I Sbjct: 152 -DMNMRVSHAVAMGQGEPFLNYDNLVAALEIINEP--LGIGARHITVSTCGILAGIDHFA 208 Query: 233 EEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291 LA+SLH+ + RN L+P PL L A + Y +S R + EY+M+ G Sbjct: 209 HLSQQYTLALSLHSAIQEKRNQLMPRCSTVPLPRLKQALKEYARVSGR-RPSVEYLMIGG 267 Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351 +ND D L G+ INL+P N + S QK + T+ + +++ G+ + IR Sbjct: 268 VNDGTTDLEALSSFCSGLFVHINLLPMNNIEESPFRPSPQKTMKTWKQVLEQRGWETTIR 327 Query: 352 TPRGLDILAACGQLKSLSKRIP 373 + RG DI ACGQLK+ + + Sbjct: 328 SSRGSDIDGACGQLKNKLQGLK 349 >gi|123969217|ref|YP_001010075.1| putative Fe-S-cluster redox protein [Prochlorococcus marinus str. AS9601] gi|205829808|sp|A2BT57|RLMN_PROMS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123199327|gb|ABM70968.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus str. AS9601] Length = 348 Score = 344 bits (884), Expect = 1e-92, Method: Composition-based stats. Identities = 118/374 (31%), Positives = 180/374 (48%), Gaps = 39/374 (10%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIY--VRGIRDFQGMSDISQEVRHLL 64 ++L+G +LE L G R QI+ WIY ++ + + + R L Sbjct: 2 KNLLGSSINDLENVALDYG----QAAFRGRQIYNWIYNYRNKNKNIDQIEVLPLDFREKL 57 Query: 65 N-QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + I + ++ DGT K LL IE V IP + R T C+SSQVG Sbjct: 58 KVDGFKVSELVIKERNLANDGTLKLLLSTEDN-----ESIECVGIPTEKRLTACLSSQVG 112 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG + L R+L A EIL Q+L + RK++NIV Sbjct: 113 CPMDCKFCATGKEGLKRSLKASEILDQILFIEY-----------------EMNRKVTNIV 155 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-------IG 236 MGMGEPL N D + S+ ++ S+R+IT+ST I+++ + Sbjct: 156 FMGMGEPLLNIDELLLSIRSINND--FQISQRKITVSTVAIPKMISKLSAKSFQILSNCQ 213 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 LAISLHA + R ++P + Y ++ +I+ C+ + + R++FEY+ML G+ND Sbjct: 214 FTLAISLHASNQKTRETIIPSAKNYEIKNIIEDCKTFVRETGR-RVSFEYLMLSGVNDKL 272 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 A L +LKG +NLI +N E+ + K++ F + +G + +R RGL Sbjct: 273 EHACELSNLLKGFQCHVNLIQYNQIDEVEFQRTSLKNLQLFQSRLVNNGIAVSLRKSRGL 332 Query: 357 DILAACGQLKSLSK 370 D AACGQL+ +K Sbjct: 333 DKNAACGQLRQNAK 346 >gi|317014803|gb|ADU82239.1| ribosomal RNA large subunit methyltransferase N [Helicobacter pylori Gambia94/24] Length = 357 Score = 344 bits (884), Expect = 1e-92, Method: Composition-based stats. Identities = 127/384 (33%), Positives = 194/384 (50%), Gaps = 45/384 (11%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64 K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L Sbjct: 2 KASIYDFTLDELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113 Q F++ EI + S DG++K+L + + E V + K + Sbjct: 54 EQEFTLRTIEIAHVRESVDGSKKYLFK----SLRDNHTFEAVLLKMKDKKIDEETNAILE 109 Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 T+CVS Q+GC + CSFC+T VR+L A EI+ Q LL + Sbjct: 110 GEKYTVCVSCQIGCQVGCSFCFTQKGGFVRDLKASEIIQQALLIKEDNN----------- 158 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230 K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAVEIFNT--GMQISPKRITISTSGVADKIPI 213 Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 + + +GV LAISLHAV + R+ L+P+N+KY +E +++ R +P L +R+ FEY+++ Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLI 272 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349 K +NDS A L+K+L GI +K+NLI FNP G ++ + F++ + G Sbjct: 273 KDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNAKGLLCT 332 Query: 350 IRTPRGLDILAACGQLKSLSKRIP 373 IR + LDI AACGQL+ + Sbjct: 333 IRESKALDIEAACGQLREKKLQQK 356 >gi|45658616|ref|YP_002702.1| ribosomal RNA large subunit methyltransferase N [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|81406814|sp|Q72NP7|RLMN_LEPIC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|45601860|gb|AAS71339.1| conserved hypothetical protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 353 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 123/371 (33%), Positives = 182/371 (49%), Gaps = 29/371 (7%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 N +K L G +EL E ++ +G R QI+ +YV + + S+ + Sbjct: 9 NQTEKIPLKGRTLKELSEIMITLG----EKPFRAKQIYHGLYVNRYETWDQFTTFSKIFK 64 Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS--RGTLCVS 119 L + S+ + ++V + S DGT+K+ + G E E V+IP R T+C+S Sbjct: 65 EKLEELCSLTHLQVVKQLKSVDGTQKFTFTSES---GNGKEFEAVWIPSGDGGRKTICIS 121 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 SQ+GC+L C FC T + NL A EI+ Q+L ++GD K Sbjct: 122 SQIGCTLNCKFCATAKLEFQGNLKAHEIVDQILQVEKIVGD-----------------KA 164 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVM 238 +N+V MGMGEPL N+ NV ++ SI D L+ +RIT+STSG V I R E + Sbjct: 165 TNVVFMGMGEPLHNYFNVIRAASIFHDPDALNLGAKRITISTSGVVNGIRRFIENKEPYN 224 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 AISL+ R ++ I K+ L L+ A + + RRITFEYVM+ G+N + Sbjct: 225 FAISLNHPDPKGRLQIMDIEEKFSLPELLQAAKDF-TRELKRRITFEYVMIPGVNMGFEN 283 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A L+KI K + KIN+IP N + +++I F ++ +G R G DI Sbjct: 284 ANKLVKIAKSLDCKINVIPLN-TEFFGWRRPTREEIAEFIALLEPAGVPILNRRSPGKDI 342 Query: 359 LAACGQLKSLS 369 ACG L S S Sbjct: 343 FGACGMLASKS 353 >gi|297588340|ref|ZP_06946983.1| cfr family radical SAM enzyme [Finegoldia magna ATCC 53516] gi|297573713|gb|EFH92434.1| cfr family radical SAM enzyme [Finegoldia magna ATCC 53516] Length = 349 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 118/373 (31%), Positives = 195/373 (52%), Gaps = 31/373 (8%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 K L M +EL+E + G R Q ++ I+ I D + M++ S ++R Sbjct: 1 MQNKIVLENMTVDELKEFFVNNG----EKSFRALQYFQAIHKNRIFDPEMMTNFSNDLRK 56 Query: 63 LLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L+ + I I+ S D T+K+L+ I +ETV++ K+ ++C+S+Q Sbjct: 57 KLDNYNDIKNCSIIKRIDSKLDNTKKYLIELSDGNI-----VETVFMEYKTHTSICLSTQ 111 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 +GC + C FC + + VRNL E+ Q+ L + +G +I+N Sbjct: 112 IGCKMGCKFCASTKKSFVRNLQPYEMCAQIYLVEN-----------------DLGIRINN 154 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240 +V+MG+GEPL N+DNV + + + S+ G S R ITLST G V I ++ +E IG+ + Sbjct: 155 MVLMGIGEPLDNYDNVVRFIDLISNKEGQDMSIRNITLSTCGLVDKIIKLADEDIGINIT 214 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ISLH ++ RN L+PI KY +E ++DAC +Y + RI FEY ++ +NDS + Sbjct: 215 ISLHNPFDNERNQLMPIGNKYSIEEILDACDYYFDKTKR-RIGFEYTVIGNVNDSKKYMD 273 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L+ +LK +NLI NP D+ ++ F + ++ ++ IR +G+DI Sbjct: 274 KLVGLLKNRNCLLNLITLNPIEEFNQKSPDRNKMMEFMNYMNKNNVNTTIRRKQGIDIDG 333 Query: 361 ACGQLK--SLSKR 371 ACGQL+ +++KR Sbjct: 334 ACGQLRINNMTKR 346 >gi|308183521|ref|YP_003927648.1| ribosomal RNA large subunit methyltransferase N [Helicobacter pylori PeCan4] gi|308065706|gb|ADO07598.1| ribosomal RNA large subunit methyltransferase N [Helicobacter pylori PeCan4] Length = 357 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 126/380 (33%), Positives = 193/380 (50%), Gaps = 45/380 (11%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64 K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L Sbjct: 2 KASIYDFTLKELGQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113 Q F++ EI + S DG++K+L + + E V + K + Sbjct: 54 EQEFTLRTIEITHVRKSVDGSKKYLFK----SLRDNHTFEAVLLKMKDKKIDEETNAILE 109 Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 T+CVS Q+GC + C+FC+T VRNL A EI+ Q LL + Sbjct: 110 GEKYTVCVSCQIGCQVGCAFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230 K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNT--GMQISPKRITISTSGVADKIPI 213 Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 + + +GV LAISLHAV + R+ L+P+N+KY +E +++ R +P L +R+ FEY+++ Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLI 272 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349 K +ND+ A L+K+L GI +K+NLI FNP G ++ + F++ + G Sbjct: 273 KDLNDNLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCT 332 Query: 350 IRTPRGLDILAACGQLKSLS 369 IR + LDI AACGQL+ Sbjct: 333 IRESKALDIEAACGQLREKK 352 >gi|291335247|gb|ADD94867.1| putative Fe S cluster redox protein [uncultured marine bacterium MedDCM-OCT-S09-C145] Length = 348 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 117/374 (31%), Positives = 181/374 (48%), Gaps = 39/374 (10%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIY--VRGIRDFQGMSDISQEVRHLL 64 ++L+G ++LE L G R QI+ W+Y + ++ + + R L Sbjct: 2 KNLLGCSVKDLESLALNFG----QAAFRGRQIYSWLYNYKNRSKSIDEINVLPLKFRDQL 57 Query: 65 N-QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + F + ++ ++ DGT K LL +E V IP + R T C+SSQVG Sbjct: 58 KNEAFLFGELTLNEKYLATDGTLKLLLNTRDN-----ESVECVGIPTEKRLTACLSSQVG 112 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG + L R+L A EIL Q+L + + +K+SNIV Sbjct: 113 CPMDCKFCATGKEGLKRSLKASEILDQILFIENQM-----------------NQKVSNIV 155 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIG 236 MGMGEPL N D + S+ ++ S+R+IT+ST I+++ + + Sbjct: 156 FMGMGEPLLNIDELLLSIRSINED--FDISQRKITVSTVAIPKMISKLSKLSFQVLGKCQ 213 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 LAISLHA + +R ++P + Y ++ +ID CR Y + R++FEY+ML G+ND Sbjct: 214 FTLAISLHASNQKIREAIIPSAKNYHIKNIIDDCREYVRETGR-RVSFEYLMLHGVNDKL 272 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 A L ++KG +NLI +N E+ + K+ F + SG + R RG Sbjct: 273 EHADELSNLIKGFQCHVNLIQYNHIEEVEFKQTPTKNAQLFQTRLSNSGINVSFRKSRGS 332 Query: 357 DILAACGQLKSLSK 370 D AACGQL+ K Sbjct: 333 DRNAACGQLRQNEK 346 >gi|289643660|ref|ZP_06475773.1| radical SAM enzyme, Cfr family [Frankia symbiont of Datisca glomerata] gi|289506551|gb|EFD27537.1| radical SAM enzyme, Cfr family [Frankia symbiont of Datisca glomerata] Length = 413 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 122/371 (32%), Positives = 183/371 (49%), Gaps = 27/371 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIR--DFQGMSDISQEVRHLL 64 L + + E + +G P R Q+ + + R +R D + M+D+ Sbjct: 44 RHLADLTTTQRRELTVSLGEPA----FRADQVARHYFARYLRAGDAEAMTDLPAAS-RAA 98 Query: 65 NQHFSIIYPEIVDEKISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + ++CD T K L R V IE+V + R T+CVSSQ Sbjct: 99 LLEALLPALLTPARTMTCDAGATHKTLWR-----AFDGVLIESVLMRYPDRATVCVSSQA 153 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RNL+A EI+ QV+ A I + ++SN+ Sbjct: 154 GCGMGCPFCATGQGGLTRNLSAAEIVEQVVAAA---------GAIARGELAGGPARLSNV 204 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVG-EEIGVML 239 V MGMGEPL N+ V +L + + GL S R IT+ST G VP I R+ + V L Sbjct: 205 VFMGMGEPLANYATVVAALRVLTAPPPAGLGLSARSITVSTVGLVPAIRRLAGAGLPVTL 264 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA ++LR+ LVP+NR++P+ ++ A Y + RR++ EY ++ +ND P A Sbjct: 265 AVSLHAPDDELRDSLVPVNRRWPVAEVLTAAWEYAE-TTGRRVSIEYALIDDVNDQPERA 323 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L +L G A +NLIP NP G + S+++ F ++ G ++ +R RG DI Sbjct: 324 DALADLLVGRLAHVNLIPLNPTRGVSWQASERRREREFVRRLRLRGITATVRDTRGRDIA 383 Query: 360 AACGQLKSLSK 370 AACGQL + + Sbjct: 384 AACGQLAADAP 394 >gi|317011560|gb|ADU85307.1| ribosomal RNA large subunit methyltransferase N [Helicobacter pylori SouthAfrica7] Length = 357 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 126/384 (32%), Positives = 194/384 (50%), Gaps = 45/384 (11%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64 K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L Sbjct: 2 KASIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIASL 53 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113 Q F++ EI + S DG++K+L + + E V + K + Sbjct: 54 EQEFTLRTIEITHVRESVDGSKKYLFK----SLRDNHTFEAVLLKMKDKKIDGETNAILE 109 Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 T+CVS Q+GC + CSFC+T VR+L A EI+ Q LL + Sbjct: 110 GEKYTVCVSCQIGCQVGCSFCFTQKGGFVRDLKASEIVQQALLIKEDNN----------- 158 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230 K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNT--GMQISPKRITISTSGVADKIPI 213 Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 + + +GV LAISLHAV + R+ L+P+N+KY +E +++ + +P L +R+ FEY+++ Sbjct: 214 LASKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVKKWP-LEQRKRVMFEYLLI 272 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349 K +NDS A L+K+L GI +K+NLI FNP G ++ + F++ + G Sbjct: 273 KNLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCT 332 Query: 350 IRTPRGLDILAACGQLKSLSKRIP 373 IR + LDI AACGQL+ + Sbjct: 333 IRESKALDIEAACGQLREKKLQQK 356 >gi|212550675|ref|YP_002308992.1| hypothetical protein CFPG_318 [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548913|dbj|BAG83581.1| conserved hypothetical protein [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 322 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 121/339 (35%), Positives = 181/339 (53%), Gaps = 25/339 (7%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 QI W+Y R + + M++IS R LN+H+ I E + ++ S DG K+L Sbjct: 4 FTAKQIANWLYKRRVSSIEEMTNISLLHRKQLNEHYYIGKKEYLYKQKSMDGAIKYLF-- 61 Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 I IE+VYIPEK+R TLCVSSQ+GC + C FC TG Q LT +I+ Q++ Sbjct: 62 ---SINNRHFIESVYIPEKARATLCVSSQIGCKMHCLFCTTGRQGFEGQLTTGDIINQII 118 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 ++N+V MGMGEPL N + + KSL I + + G ++ Sbjct: 119 SIPESA-------------------SLTNLVFMGMGEPLDNIEVLLKSLEILTANYGFAW 159 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 S +RIT+ST G +P + R+ EE V LAIS+H+ + R +PI +KYP++ +I + Sbjct: 160 SPKRITISTVGIIPELKRLLEETKVRLAISVHSPFHAERMSWIPIEKKYPIKKIIGLIQQ 219 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 Y RR++FEY+ +ND + A L ++LKGIP ++NLI ++P SD K Sbjct: 220 Y-NFRFQRRVSFEYITFGRLNDDIKHASALFRLLKGIPCRVNLIKYHPQQDTVLPASDLK 278 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 +++ F + IR+ RG DI AACG L + + Sbjct: 279 NMIAFRNYLNSKKIICTIRSSRGEDISAACGMLSTKKNK 317 >gi|254527128|ref|ZP_05139180.1| radical SAM enzyme, Cfr family [Prochlorococcus marinus str. MIT 9202] gi|221538552|gb|EEE41005.1| radical SAM enzyme, Cfr family [Prochlorococcus marinus str. MIT 9202] Length = 348 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 118/373 (31%), Positives = 180/373 (48%), Gaps = 39/373 (10%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIY--VRGIRDFQGMSDISQEVRHLL 64 ++L+G ++LE L+ G R QI WIY + + + + R L Sbjct: 2 KNLLGSSVKDLENVALEYG----QAAFRGRQIHNWIYNYRNKKKSIDQIEVLPLDFRKKL 57 Query: 65 NQ-HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + + ++ DGT K LL IE V IP + R T C+SSQVG Sbjct: 58 KDDGFKLSELSVQERNLANDGTLKLLL-----SANDNESIECVGIPTEKRLTACLSSQVG 112 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG + L R+L A EIL Q+L + + RK++NIV Sbjct: 113 CPMDCKFCATGKEGLKRSLKASEILDQILFIEN-----------------EMNRKVTNIV 155 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-------IG 236 MGMGEPL N D++ S+ + S+R+IT+ST I ++ + Sbjct: 156 FMGMGEPLLNIDDLLVSIRSINKD--FQISQRKITVSTVAVPKMINKLSAKSFQILGNCQ 213 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 LAISLHA + +R ++P + Y +E +I+ C+ Y + R++FEY+ML G+ND Sbjct: 214 FTLAISLHASNQKIRETIIPSAKNYEIENIIEDCKQYVRDTGR-RVSFEYLMLSGVNDKL 272 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 A L +LKG +NLI +N E+ + K + +F + +G + +R RGL Sbjct: 273 EHANELSNLLKGFQCHVNLIQYNQIDEVEFQRTSLKSLQSFQSKLSHNGIAVSLRKSRGL 332 Query: 357 DILAACGQLKSLS 369 D AACGQL+ + Sbjct: 333 DKNAACGQLRQNA 345 >gi|33862037|ref|NP_893598.1| putative Fe-S-cluster redox protein [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|81575609|sp|Q7V010|RLMN_PROMP RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|33634255|emb|CAE19940.1| conserved hypothetical protein [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 348 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 117/374 (31%), Positives = 182/374 (48%), Gaps = 39/374 (10%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIY--VRGIRDFQGMSDISQEVRHLL 64 ++L+G ++LE+ L G R QI+ W+Y + ++ + + R L Sbjct: 2 KNLLGCSVKDLEKIALNYG----QAAFRGRQIYNWLYNYKNRSKSIDEINVLPLKFRDQL 57 Query: 65 N-QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + F + ++ ++ DGT K LL +E V IP + R T C+SSQVG Sbjct: 58 KNEAFLFGELTLKEKYLATDGTLKLLLNTRDN-----ESVECVGIPTEKRLTACLSSQVG 112 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG + L R+L EIL Q+L + + +K+SNIV Sbjct: 113 CPMDCKFCATGKEGLKRSLKVSEILDQILFIENQM-----------------NQKVSNIV 155 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-------EIG 236 MGMGEPL N D + S+ ++ + S+R+IT+ST I+++ E + Sbjct: 156 FMGMGEPLLNIDELLLSIRSINED--FAISQRKITVSTVAIPKMISKLSELSFQVLGKCQ 213 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 LAISLHA + +R ++P + Y ++ +ID CR Y + R++FEY+ML G+ND Sbjct: 214 FTLAISLHASNQKIREAIIPSAKNYHIKNIIDDCREYVRETGR-RVSFEYLMLHGVNDKL 272 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 A L ++KG +NLI +N E+ + K+ F + SG + R RG Sbjct: 273 EHADELSNLIKGFQCHVNLIQYNHIEEVEFKQTPIKNAQLFQTRLSNSGINVSFRKSRGS 332 Query: 357 DILAACGQLKSLSK 370 D AACGQL+ K Sbjct: 333 DRNAACGQLRQNDK 346 >gi|15646037|ref|NP_208219.1| ribosomal RNA large subunit methyltransferase N [Helicobacter pylori 26695] gi|3287947|sp|O25970|RLMN_HELPY RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|2314600|gb|AAD08467.1| conserved hypothetical protein [Helicobacter pylori 26695] Length = 357 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 127/380 (33%), Positives = 194/380 (51%), Gaps = 45/380 (11%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64 K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L Sbjct: 2 KASIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113 + F++ EI + S DG++K+L + + E V + K + Sbjct: 54 EREFALRTIEITHVRESVDGSKKYLFK----SLRDNHTFEAVLLKMKDKKIDAETNAILE 109 Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 T+CVS Q+GC + CSFC+T VRNL A EI+ Q LL + Sbjct: 110 REKYTVCVSCQIGCQVGCSFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230 K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I Sbjct: 159 ---LPLEKALNIVFMGMGEPLNNLDEVCKAIEIFNT--GMQISPKRITISTSGVADKIPI 213 Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 + + +GV LAISLHAV + R+ L+P+N+KY +E +++ R +P L +R+ FEY+++ Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLI 272 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349 K +NDS A L+K+L GI +K+NLI FNP G ++ ++ F++ + G Sbjct: 273 KDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLENARMFADFLNSKGLLCT 332 Query: 350 IRTPRGLDILAACGQLKSLS 369 IR + LDI AACGQL+ Sbjct: 333 IRESKALDIEAACGQLREKK 352 >gi|157414083|ref|YP_001484949.1| ribosomal RNA large subunit methyltransferase N [Prochlorococcus marinus str. MIT 9215] gi|205829804|sp|A8G6Y2|RLMN_PROM2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|157388658|gb|ABV51363.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus str. MIT 9215] Length = 348 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 117/373 (31%), Positives = 180/373 (48%), Gaps = 39/373 (10%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIY--VRGIRDFQGMSDISQEVRHLL 64 ++L+G ++LE L+ G R QI WIY + + + + R L Sbjct: 2 KNLLGSSVKDLENVALEYG----QAAFRGRQIHNWIYNYRNKKKSIDQIEALPLDFRKKL 57 Query: 65 NQ-HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + + + ++ DGT K LL IE V IP + R T C+SSQVG Sbjct: 58 KDDGFKLSELSVQERNLANDGTLKLLL-----SANDNESIECVGIPTEKRLTACLSSQVG 112 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG + L R+L A EIL Q+L + + RK++NIV Sbjct: 113 CPMDCKFCATGKEGLKRSLKASEILDQILFIEN-----------------EMNRKVTNIV 155 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-------IG 236 MGMGEPL N D++ S+ + S+R+IT+ST I ++ + Sbjct: 156 FMGMGEPLLNIDDLLVSIRSINKD--FQISQRKITVSTVAVPKMINKLSAKSFQILGNCQ 213 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 LAISLHA + +R ++P + Y +E +I+ C+ Y + R++FEY+ML G+ND Sbjct: 214 FTLAISLHASNQKIRETIIPSAKNYEIENIIEDCKQYVRDTGR-RVSFEYLMLSGVNDKL 272 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 A L +L+G +NLI +N E+ + K + +F + +G + +R RGL Sbjct: 273 EHANELSNLLRGFQCHVNLIQYNQIDEVEFQRTSLKSLQSFQSRLSHNGIAVSLRKSRGL 332 Query: 357 DILAACGQLKSLS 369 D AACGQL+ + Sbjct: 333 DKNAACGQLRQNA 345 >gi|126697010|ref|YP_001091896.1| putative Fe-S-cluster redox protein [Prochlorococcus marinus str. MIT 9301] gi|205829802|sp|A3PEX0|RLMN_PROM0 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|126544053|gb|ABO18295.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus str. MIT 9301] Length = 347 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 119/374 (31%), Positives = 185/374 (49%), Gaps = 39/374 (10%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIY--VRGIRDFQGMSDISQEVRHLL 64 ++L+G ++LE L G R QI+ WIY ++ + + + R L Sbjct: 2 KNLLGSTIKDLENVALDYG----QAGFRGRQIYNWIYNYRNKKKNIDQIEVLPLDFRKRL 57 Query: 65 NQ-HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + I + ++ DGT K LL IE V IP + R T C+SSQVG Sbjct: 58 KDDGFKVSDLSIHERNLANDGTLKLLLSTEDN-----ESIECVGIPTEKRLTACLSSQVG 112 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG + L R+L EIL Q+L + + RK++NIV Sbjct: 113 CPMDCKFCATGKEGLKRSLKVSEILDQILFIEN-----------------EMNRKVTNIV 155 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-------IG 236 MGMGEPL N D++ S+ ++ L S+R+IT+ST I ++ + Sbjct: 156 FMGMGEPLLNIDDLLLSIRSINED--LKISQRKITVSTVAVPKMINKLSAKSFKILGNCQ 213 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 LA+SLHA + +R ++P + Y +E +I+ C+ Y + R++FEY+ML+G+ND Sbjct: 214 FTLAVSLHAPNQKIRETIIPSAKNYEIENIIEDCKQYVRDTGR-RVSFEYLMLRGVNDKI 272 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 A L +LKG +NLI +N E+ + KD+ +F + +G + +R RGL Sbjct: 273 EHANELSHLLKGFQCHVNLIQYNQIDEVEFQRACLKDLQSFQSRLSHNGIAVSLRKSRGL 332 Query: 357 DILAACGQLKSLSK 370 D AACGQL+ ++ Sbjct: 333 DKNAACGQLRQNAR 346 >gi|94968595|ref|YP_590643.1| hypothetical protein Acid345_1567 [Candidatus Koribacter versatilis Ellin345] gi|122986342|sp|Q1IRD1|RLMN_ACIBL RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|94550645|gb|ABF40569.1| 23S rRNA m(2)A-2503 methyltransferase [Candidatus Koribacter versatilis Ellin345] Length = 346 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 130/363 (35%), Positives = 200/363 (55%), Gaps = 42/363 (11%) Query: 21 LLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ-HFSIIYPEIVDEK 79 + ++G P R+ Q+W+ +Y I + + +R L ++I +P + Sbjct: 1 MERLGQPA----YRSRQLWQGLYRDRIASLDQFTTLPIPLREELKSSGWAIAFPFVQKRF 56 Query: 80 ISCDGTRKWLLRFPARCIGGPVEIETVYIPEK---------------SRGTLCVSSQVGC 124 S DGT ++LL+F +ETV++PE R T+CVSSQVGC Sbjct: 57 TSTDGTVRYLLQFSD-----GQSVETVWMPEGDGGEQGDGSEDGPSYDRATICVSSQVGC 111 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 ++ C FC T L+RNL+A EI+ Q+L V + N+V Sbjct: 112 AVDCQFCMTALLGLLRNLSAGEIVGQILAVLKDEN-------------VDVEKSRINLVF 158 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MG GEP NFDN K++++ ++++G+ S R+T+STSG VP I G+ I LAISL Sbjct: 159 MGQGEPFLNFDNFVKAVTLLAEAVGIPES--RMTVSTSGIVPRIVDFGQLAIRPKLAISL 216 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 +A +++ R L+PI +K+ LE L+ A R +P L N R+TFEYV+L G+NDS ++A ++ Sbjct: 217 NASNDESRRELMPITKKWTLEKLMSAAREFP-LRNRERMTFEYVLLGGVNDSEQNAREVV 275 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++L+G+ AK+NLI +NP P + D + + F + + +G + IR PRG DI AACG Sbjct: 276 QLLRGLRAKVNLIAWNPGPEIPFSTPDPQHVEAFQQILIDAGIPTFIRKPRGRDIFAACG 335 Query: 364 QLK 366 QLK Sbjct: 336 QLK 338 >gi|291530132|emb|CBK95717.1| radical SAM enzyme, Cfr family [Eubacterium siraeum 70/3] Length = 345 Score = 343 bits (879), Expect = 3e-92, Method: Composition-based stats. Identities = 109/365 (29%), Positives = 184/365 (50%), Gaps = 35/365 (9%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQ---IWKWIYVRGIRDFQGMSDISQEVRHL 63 + + E+ E+ L + G R +Q I++ IY R F M+ S +++ L Sbjct: 2 TDIYSLTYEQAEKLLTENG-------FRATQCANIFRDIYKRKATGFNEMTLTSADIKAL 54 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L+ + +I + S D T K+L C +ETV + +K ++C+S+Q G Sbjct: 55 LSDKYFFGKLKIDEILQSVD-TSKYLFELSDGC-----RVETVLMRQKFGNSICISTQSG 108 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C FC +G + R+LTA E++ Q+L ISNI Sbjct: 109 CNMGCKFCCSGRLRKQRDLTAGEMVSQILTVEKYQ-----------------NITISNIT 151 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAIS 242 +MG+GEP N+D + L I + G+ + IT+ST G + LA+S Sbjct: 152 VMGIGEPFDNYDALCDFLDIVTVPGGIEIGTKHITVSTCGLCDKTELFAKRKEPCNLAVS 211 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +++RN L+PINR+Y + +I++ ++Y +N ++ EY++L GINDS +A L Sbjct: 212 LHAPDDEIRNRLMPINRRYSISQVIESAKYYVERTNR-KVLLEYILLDGINDSRENARQL 270 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++ +NLIP+NP P E+ S +++I F + +K++ + R G ++ AAC Sbjct: 271 AALIGNARLFVNLIPYNPSPDSEFKRSSEENITAFYDELKKNRINVTRRKEFGTELSAAC 330 Query: 363 GQLKS 367 GQL+S Sbjct: 331 GQLRS 335 >gi|210135589|ref|YP_002302028.1| ribosomal RNA large subunit methyltransferase N [Helicobacter pylori P12] gi|254807183|sp|B6JNS0|RLMN_HELP2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|210133557|gb|ACJ08548.1| radical SAM domain-containing enzyme [Helicobacter pylori P12] Length = 357 Score = 343 bits (879), Expect = 4e-92, Method: Composition-based stats. Identities = 124/380 (32%), Positives = 192/380 (50%), Gaps = 45/380 (11%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64 K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L Sbjct: 2 KASIYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113 + F++ EI + S DG++K+L + + E V + K + Sbjct: 54 EREFTLRTIEITHVRESVDGSKKYLFK----SLRDNHTFEAVLLKMKDKKIDKETNAILE 109 Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 T+CVS Q+GC + C+FC+T VRNL A EI+ Q LL + Sbjct: 110 GEKYTVCVSCQIGCQVGCAFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230 K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNT--GMQISPKRITISTSGVADKIPI 213 Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 + + +GV LAISLHAV + R+ L+P+N+KY +E +++ + +P L +R+ FEY+++ Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVKKWP-LEQRKRVMFEYLLI 272 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349 K +ND A L+K+L GI +K+NLI FNP G ++ + F++ + G Sbjct: 273 KDLNDGLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCT 332 Query: 350 IRTPRGLDILAACGQLKSLS 369 IR + LDI AACGQL+ Sbjct: 333 IRESKALDIEAACGQLREKK 352 >gi|208435296|ref|YP_002266962.1| hypothetical protein HPG27_1349 [Helicobacter pylori G27] gi|254807184|sp|B5Z947|RLMN_HELPG RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|208433225|gb|ACI28096.1| hypothetical protein HPG27_1349 [Helicobacter pylori G27] Length = 357 Score = 342 bits (878), Expect = 5e-92, Method: Composition-based stats. Identities = 126/380 (33%), Positives = 193/380 (50%), Gaps = 45/380 (11%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLL 64 K S+ +EL + L R Q++ W+Y + F+ M ++ S++ L Sbjct: 2 KASVYDFTLKELSQLLK--------PSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYL 53 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR----------- 113 + F++ EI + S DG++K+L + + E V + K + Sbjct: 54 EREFTLRTIEIAHVRKSIDGSKKYLFK----SLRDNHTFEAVLLKMKDKKIDEETNAILE 109 Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 T+CVS Q+GC + C+FC+T VRNL A EI+ Q LL + Sbjct: 110 GEKYTVCVSCQIGCQVGCTFCFTQKGGFVRNLKASEIIQQALLIKEDNN----------- 158 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230 K NIV MGMGEPL N D V K++ I + G+ S +RIT+STSG I Sbjct: 159 ---LPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNT--GMQISPKRITISTSGVADKIPI 213 Query: 231 VG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 + + +GV LAISLHAV + R+ L+P+N+KY +E +++ R +P L +R+ FEY+++ Sbjct: 214 LAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKWP-LEQRKRVMFEYLLI 272 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349 K +NDS A L+K+L GI +K+NLI FNP G ++ + F++ + G Sbjct: 273 KDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFADFLNSKGLLCT 332 Query: 350 IRTPRGLDILAACGQLKSLS 369 IR + LDI AACGQL+ Sbjct: 333 IRESKALDIEAACGQLREKK 352 >gi|193212778|ref|YP_001998731.1| ribosomal RNA large subunit methyltransferase N [Chlorobaculum parvum NCIB 8327] gi|193086255|gb|ACF11531.1| radical SAM enzyme, Cfr family [Chlorobaculum parvum NCIB 8327] Length = 374 Score = 342 bits (878), Expect = 5e-92, Method: Composition-based stats. Identities = 124/373 (33%), Positives = 183/373 (49%), Gaps = 33/373 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++ + R+ELE + ++G P R Q+ +W+Y F+ M+ +++R L Sbjct: 18 PNIRELNRQELEHLMQRLGQPA----YRARQLHQWLYSHQALSFEDMTSFGKKLREQLAG 73 Query: 67 HFSIIY-----PEIVDEKISCDG---TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118 ++I E + + G T K+L++ V IE+V IP + R T C+ Sbjct: 74 SWAIRPATLDATETEPAQCAAPGAIPTSKFLVKL-----DDGVLIESVLIPSEERMTACI 128 Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 SSQVGC+L C+FC TG R+L A EI QV L + GR Sbjct: 129 SSQVGCALRCTFCATGQMGFKRDLVAPEITDQVFLLQQ-------------EAHRLYGRG 175 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASD-SMGLSFSKRRITLSTSGFVPNIARVGEE-IG 236 I+N V MGMGEPL N DNV +S+S ++ S S+R+IT+ST G VP I R+ + Sbjct: 176 ITNTVFMGMGEPLLNLDNVFESISTLTEQEYRFSISERKITISTVGLVPEIGRIATSGLK 235 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 LAISLH+ R ++P+ YPL+ L A Y + +T Y++L+GIND+P Sbjct: 236 TKLAISLHSADQATRERMMPVAADYPLDELSRAISAY-NTKTGQPVTLVYMLLEGINDAP 294 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 DA L + K KINLI +N ++ F E + +G +R +G Sbjct: 295 EDARKLARFAKRGLCKINLIDYNAIVNLKFRPGYGSAKSMFIERLLDAGLHVTVRKSQGA 354 Query: 357 DILAACGQLKSLS 369 I AACGQL + S Sbjct: 355 TINAACGQLATRS 367 >gi|123966894|ref|YP_001011975.1| putative Fe-S-cluster redox protein [Prochlorococcus marinus str. MIT 9515] gi|205829807|sp|A2BYK7|RLMN_PROM5 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|123201260|gb|ABM72868.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus str. MIT 9515] Length = 348 Score = 342 bits (877), Expect = 6e-92, Method: Composition-based stats. Identities = 116/374 (31%), Positives = 180/374 (48%), Gaps = 39/374 (10%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIY--VRGIRDFQGMSDISQEVRHLL 64 ++L+G ++LE L G R QI+ W+Y + ++ + R+ L Sbjct: 2 KNLLGCSVKDLENVALNYG----QAAFRGRQIYSWLYNYKNRSKSIDEINVLPLNFRNQL 57 Query: 65 N-QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + F + ++ ++ DGT K LL +E V IP + R T C+SSQVG Sbjct: 58 KKEGFIFGELILKEKYLANDGTLKLLLNTRDN-----ESVECVGIPTEKRLTACLSSQVG 112 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG + L R+L A EIL Q+L + + +K++NIV Sbjct: 113 CPMDCKFCATGKEGLKRSLKASEILDQILFIEN-----------------EMNQKVTNIV 155 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-------IG 236 MGMGEPL N D + S+ ++ S+RRIT+ST I ++ E Sbjct: 156 FMGMGEPLLNIDELLFSIRSINED--FDVSQRRITVSTVAIPNMIRKLSEMSFQVLGKCQ 213 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 LAISLHA + R ++P + Y ++ +ID CR + + R++FEY+ML G+ND Sbjct: 214 FTLAISLHASNQKTRETIIPSAKNYHIKYIIDDCREFVKKTGR-RVSFEYLMLHGVNDKL 272 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 A L ++KG +NLI +N E+ + K+ F + +G + +R RG Sbjct: 273 EHADELSNLIKGFQCHVNLIQYNQIEEVEFKQTPSKNAQLFQNRLSNNGINVSLRKSRGS 332 Query: 357 DILAACGQLKSLSK 370 D AACGQL+ +K Sbjct: 333 DRNAACGQLRQNAK 346 >gi|78186813|ref|YP_374856.1| hypothetical protein Plut_0951 [Chlorobium luteolum DSM 273] gi|123771083|sp|Q3B4B8|RLMN_PELLD RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|78166715|gb|ABB23813.1| 23S rRNA m(2)A-2503 methyltransferase [Chlorobium luteolum DSM 273] Length = 361 Score = 342 bits (877), Expect = 6e-92, Method: Composition-based stats. Identities = 126/371 (33%), Positives = 188/371 (50%), Gaps = 30/371 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 ++ +++ + +EL+EAL I PQ R +Q+ +W++ F M+ +S +R L Sbjct: 4 ERSNILNLRMDELKEALAAINEPQW----RAAQLHQWLFSHRAGSFDDMTTLSLPLRRKL 59 Query: 65 NQHFSIIYPEIVDEKISCDG-----TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119 + F I P + +G T K L++ P +ETV IP +R T CVS Sbjct: 60 AESFYIQQPVTEKHDETMEGSPAGATEKLLIQLPD-----GERVETVLIPGPNRMTACVS 114 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 +Q GC L CSFC TG RNL++ EI QV +L + + I Sbjct: 115 AQAGCLLGCSFCATGQMGFRRNLSSGEITGQVWALSDMLQE------------RNREASI 162 Query: 180 SNIVMMGMGEPLCNFDNVKKS-LSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGV 237 SNIV MGMGEPL N NV ++ L++++ S S+R+IT+ST G P I R+ + + Sbjct: 163 SNIVFMGMGEPLLNTANVIEAVLNLSTRKYRFSTSQRKITISTVGITPEIDRLADTGLKT 222 Query: 238 MLAISLHAVSNDLRNILVPIN-RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 LA+SLH+ + R L+P R+YPL+ L ++ Y + +T Y++LKGINDS Sbjct: 223 KLAVSLHSAIQEKREALMPQAARQYPLDRLRESLIGYASKT-GEPVTLAYMLLKGINDSE 281 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 DA LI+ G KINLI +NP ++ F + ++ +G IR G Sbjct: 282 MDAKRLIRYASGFFCKINLIDYNPIVNIKFEPVCDGTRERFRDILQDAGLQVTIRKSYGT 341 Query: 357 DILAACGQLKS 367 I AACGQL + Sbjct: 342 PINAACGQLAA 352 >gi|332298026|ref|YP_004439948.1| Ribosomal RNA large subunit methyltransferase N [Treponema brennaborense DSM 12168] gi|332181129|gb|AEE16817.1| Ribosomal RNA large subunit methyltransferase N [Treponema brennaborense DSM 12168] Length = 342 Score = 342 bits (877), Expect = 7e-92, Method: Composition-based stats. Identities = 122/367 (33%), Positives = 179/367 (48%), Gaps = 33/367 (8%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M + K S+ G++ EEL +P + R QI+KW+ G FQ M ++ Q + Sbjct: 1 MATMDKISVAGLLPEELSA------LPGVSPQFRGKQIFKWL-GNGAASFQEMRNLPQHL 53 Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVS 119 R L++ ++ +I E DGT K + IETV + + S R T CVS Sbjct: 54 RDSLSETAAVRSSQIAQELRDPDGTVKLQITLHD-----GACIETVLLTDSSGRKTACVS 108 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 Q GC++ C+FC TG L RNL A EI+ Q L + G K+ Sbjct: 109 CQAGCAMGCAFCQTGKLGLARNLDAAEIVEQFLYLEQVSG------------------KL 150 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238 NIV MGMGEP+ N V+K++++ + G S RRIT+STSG + I + + + Sbjct: 151 DNIVFMGMGEPMMNLSAVRKAVAVLTHPEGRGLSARRITVSTSGIIKGIYDLADNGPHMR 210 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SL +LR L+P+ + PL L A +Y S R T E +L G+N Sbjct: 211 LAVSLTTADPELRERLMPVTKGNPLPELQKAIAYYTEKSKK-RCTLEAALLAGMNTGTAS 269 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 A LI+ +G+ INLIP+NP PG + + F ++++ + +RT RG I Sbjct: 270 AERLIEFARGLDVHINLIPWNPVPGLPFAEPSAAECTAFVRLLEKARLNVTLRTRRGRKI 329 Query: 359 LAACGQL 365 ACGQL Sbjct: 330 GGACGQL 336 >gi|290980807|ref|XP_002673123.1| predicted protein [Naegleria gruberi] gi|284086704|gb|EFC40379.1| predicted protein [Naegleria gruberi] Length = 482 Score = 342 bits (877), Expect = 7e-92, Method: Composition-based stats. Identities = 161/439 (36%), Positives = 232/439 (52%), Gaps = 62/439 (14%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 + ++SL+G+ + E++E L K P R ++I+K+IY G R F ++ +++ R Sbjct: 27 TQIVRKSLMGLNKTEMKEILEKT-HPHVASSFRLNEIYKFIYKFGARKFDDITVLTKSDR 85 Query: 62 HLLNQHFSIIYPEIVDEKISC--DG-TRKWLLRFPARCIGGPV----------------- 101 L++ +SI ++E+I D TRK+L F PV Sbjct: 86 QSLSELYSIDILGNIEEEIKSKKDKHTRKFLFAFQNPKYVPPVADNSVDSTIVSTTSSAS 145 Query: 102 -------------------------------EIETVYIPEK-------SRGTLCVSSQVG 123 ++E VYI RGT+C+SSQVG Sbjct: 146 SSCGNQQNISDADVAISPMKKPTLKEQKQFNKVEAVYIYHPPKASDSFGRGTVCLSSQVG 205 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK-ISNI 182 CSL C FC TGT + RNL A EI+ Q++ + L DFP E S+ + ++NI Sbjct: 206 CSLNCKFCRTGTAPIERNLLASEIVSQLVSVKHRLMDFPIYMTEEERKRASIEKSFVNNI 265 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 V MG GEPL N+ NVKK++ I SD G SKR+I +STSG I V ++GV LAIS Sbjct: 266 VFMGEGEPLYNYKNVKKAIEILSD--GCGISKRKIIVSTSGVCNLIPDVVNDLGVNLAIS 323 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +N+LR+ +VPIN+ +PLE+L + R +N R ITFEYVML +ND DA L Sbjct: 324 LHATTNELRDNIVPINKIFPLEVLFETLREQCFKNNNRHITFEYVMLNHVNDFIDDAKRL 383 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +K++K IP +NLI FN W G + CS + I FS+ + ++G S+P+R +G DIL AC Sbjct: 384 VKLVKDIPCSVNLIAFNEWEGSGFECSSDERIEEFSKYLYKNGISAPVRHSKGQDILGAC 443 Query: 363 GQLKSLSKRIPKVPRQEMQ 381 GQLK+ ++ +Q Q Sbjct: 444 GQLKNRNENKAGALQQTEQ 462 >gi|116515112|ref|YP_802741.1| YfgB [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285492|sp|Q057Q1|RLMN_BUCCC RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|116256966|gb|ABJ90648.1| putative pyruvate formate lyase activating enzyme [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 359 Score = 341 bits (876), Expect = 8e-92, Method: Composition-based stats. Identities = 143/363 (39%), Positives = 206/363 (56%), Gaps = 20/363 (5%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ +++ +KIG + R QI WIY + F MS+++ ++ L Sbjct: 13 KKINLLNFNLKKMINFFIKIG----EKKFRAIQITDWIYKKQNIKFDQMSNLNFFLKKKL 68 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 N I P+ + + S DGT KW + IET+YIPEK R TLC+SSQVGC Sbjct: 69 NNIAVIKIPKCIKKIKSIDGTIKWKF------LCNKEFIETIYIPEKKRATLCISSQVGC 122 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 L C+FC TG RNL EI+ Q+ + + I NIVM Sbjct: 123 QLKCNFCATGQLGYKRNLLVSEIIGQIWYV--------INKIKKYNSKKKNFPPIKNIVM 174 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N N+ ++ I + G +FSK ++TLSTSG VP I ++ +I + LA+SLH Sbjct: 175 MGMGEPLLNLKNIIIAIDIILGNYGFNFSKNKVTLSTSGIVPAINKIAGKIDISLAVSLH 234 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNL 302 A +N +RN ++PIN+ Y +++L+++ ++Y S+A + +T EYVML IND A+ L Sbjct: 235 ASNNTIRNKIMPINKIYNIQLLLESIKNYLKKSSANKGIVTIEYVMLSKINDFQHHAIEL 294 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +LK IP KINLIP+NP Y+CS K+I+ F+ +++ G+ IR RG DI AAC Sbjct: 295 SNLLKNIPCKINLIPWNPIKNSSYICSSSKNIINFANFLRKKGFIVIIRKNRGSDIQAAC 354 Query: 363 GQL 365 GQL Sbjct: 355 GQL 357 >gi|291556918|emb|CBL34035.1| radical SAM enzyme, Cfr family [Eubacterium siraeum V10Sc8a] Length = 345 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 107/365 (29%), Positives = 185/365 (50%), Gaps = 35/365 (9%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQ---IWKWIYVRGIRDFQGMSDISQEVRHL 63 + + E+ E+ L + G R +Q I++ IY R F M+ S +++ L Sbjct: 2 TDIYSLTYEQAEKLLTENG-------FRATQCANIFRDIYKRRASGFDEMTLTSADIKAL 54 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L+ + +I + S D T K+L C ++ETV + +K ++C+S+Q G Sbjct: 55 LSDKYFFGKLKIDEILQSVD-TSKYLFELSDGC-----KVETVLMRQKFGNSICISTQSG 108 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C FC +G + R+LTA E++ Q+L ISN Sbjct: 109 CNMGCKFCCSGRLRKQRDLTAGEMVSQILAVEKHQ-----------------NITISNTT 151 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242 +MG+GEP N+D + L I + G+ + IT+ST G + E + LA+S Sbjct: 152 VMGIGEPFDNYDALCDFLDIVTVPGGIETGTKHITVSTCGLCDKMKLFAERKEPCNLAVS 211 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +++RN L+P+NR+Y + +I++ ++Y +N ++ EY++L GINDS +A L Sbjct: 212 LHAPDDEIRNRLMPVNRRYSISQVIESAKYYVERTNR-KVLLEYILLDGINDSRENARQL 270 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++ +NLIP+NP E+ S +++I F + +K++ + R G ++ AAC Sbjct: 271 AALIGNARLFVNLIPYNPSHDSEFKRSSEENITAFYDELKKNRINVTRRKEFGTELSAAC 330 Query: 363 GQLKS 367 GQL+S Sbjct: 331 GQLRS 335 >gi|296127640|ref|YP_003634892.1| radical SAM enzyme, Cfr family [Brachyspira murdochii DSM 12563] gi|296019456|gb|ADG72693.1| radical SAM enzyme, Cfr family [Brachyspira murdochii DSM 12563] Length = 342 Score = 341 bits (874), Expect = 1e-91, Method: Composition-based stats. Identities = 130/369 (35%), Positives = 208/369 (56%), Gaps = 34/369 (9%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S++ + E+L + + P + SQ+ WIY + F+ MS+I + +R LL Sbjct: 3 KKISIMNVSEEDLSKFCEENNFP----KFHASQVLDWIYKKYAVSFEDMSNIPKNLRALL 58 Query: 65 NQHFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 ++++ I +I E IS D GT+K L+ + +IE+V + +K R T C+SSQV Sbjct: 59 DENYFIHNSKI--ETISEDEYGTKKLLISLYDKK-----KIESVILQKKDRVTFCLSSQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC C+FC TG+ L RNLTA+EIL + +L R++ +K+++I Sbjct: 112 GCGYGCAFCATGSMGLSRNLTADEILAEFILMRAVT------------------KKVNSI 153 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241 V MGMGEPL N N+ K++ + G + R IT+STSG V I ++ E ++ LA+ Sbjct: 154 VFMGMGEPLANTKNLFKAIETINSFKGFNLGIRHITISTSGEVVGIKQLIEKDLDCRLAV 213 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH++ N++R+ ++PIN++YP+E L+ + Y + R ITFE+V++K +NDS DA Sbjct: 214 SLHSLKNEVRDKIMPINKRYPIENLMAVLKRY-SKNGKRMITFEWVLIKDVNDSVNDAYR 272 Query: 302 LIKILKGIPAKINLIPFNPWPGCEY-LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L+ + K P K+N+IP NP + ++ I+ F +K +G R +G +ILA Sbjct: 273 LVNLKKEFPFKVNVIPMNPVEHAPHLQRPNKDIILRFKSILKDNGIEVVERFKQGQEILA 332 Query: 361 ACGQLKSLS 369 CGQL + Sbjct: 333 GCGQLAVKN 341 >gi|167751032|ref|ZP_02423159.1| hypothetical protein EUBSIR_02017 [Eubacterium siraeum DSM 15702] gi|167655950|gb|EDS00080.1| hypothetical protein EUBSIR_02017 [Eubacterium siraeum DSM 15702] Length = 345 Score = 341 bits (874), Expect = 1e-91, Method: Composition-based stats. Identities = 107/365 (29%), Positives = 183/365 (50%), Gaps = 35/365 (9%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQ---IWKWIYVRGIRDFQGMSDISQEVRHL 63 + + E+ E+ L + G R +Q I++ IY R F M+ S +++ Sbjct: 2 TDIYSLTYEQAEKLLTENG-------FRATQCANIFRDIYKRRASGFDEMTLTSADIKAF 54 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L+ + +I + S D T K+L C +ETV + +K ++C+S+Q G Sbjct: 55 LSDKYFFGKLKIDEILQSVD-TSKYLFELSDGC-----RVETVLMRQKFGNSICISTQSG 108 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C FC +G + R+LTA E++ Q+L I NI Sbjct: 109 CNMGCKFCCSGRLRKQRDLTAGEMVSQILAVEKHQ-----------------NITIGNIT 151 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242 +MG+GEP N+D + L I + G+ + IT+ST G E + LA+S Sbjct: 152 VMGIGEPFDNYDALCDFLDIVTVPGGIETGTKHITVSTCGLCDKTKLFAERKEPCNLAVS 211 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +++RN L+P+NR+Y + +I++ ++Y +N ++ EY++L GINDS +A L Sbjct: 212 LHAPDDEIRNRLMPVNRRYSISQVIESAKYYVERTNR-KVLLEYILLDGINDSRENARQL 270 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++ +NLIP+NP P E+ S +++I F + +K++ + R G ++ AAC Sbjct: 271 AALIGNARLFVNLIPYNPSPDSEFKRSSEENITAFYDELKKNRINVTRRKEFGTELSAAC 330 Query: 363 GQLKS 367 GQL+S Sbjct: 331 GQLRS 335 >gi|189346924|ref|YP_001943453.1| radical SAM enzyme, Cfr family [Chlorobium limicola DSM 245] gi|254807162|sp|B3ED49|RLMN_CHLL2 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|189341071|gb|ACD90474.1| radical SAM enzyme, Cfr family [Chlorobium limicola DSM 245] Length = 361 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 121/371 (32%), Positives = 182/371 (49%), Gaps = 30/371 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++ + EL A+ +G P R +Q+ +W++ R F ++ I+ +R L+ Sbjct: 6 PNIKDFTKPELIRAITSLGEPA----YRAAQLHQWLFSHRTRSFDDITIINLALRQKLSS 61 Query: 67 HFSIIYPEIVD-EKISCDG----TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 +SI + D + D T K+L+R +E V IP ++R T C+SSQ Sbjct: 62 IYSIRTATLDDCRQEYRDDHEIPTTKFLVRMHDD-----ETVEAVLIPAENRITACISSQ 116 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GCSL CSFC TG RNLT+ E+ QV L L + G+ I+N Sbjct: 117 AGCSLHCSFCATGKTGFRRNLTSGEMTDQVFLLNDHLAE-------------HYGQTITN 163 Query: 182 IVMMGMGEPLCNFDNVKKSLSIA-SDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VML 239 IV MGMGEPL N +V ++ + + S S+R+I++ST+G +P I + V L Sbjct: 164 IVFMGMGEPLLNMTHVLDAIETLSNHNYRYSLSQRKISISTAGIIPQIDLLARLPHKVKL 223 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH+ R ++P R+YPL L + Y LS + +T Y++L+ INDSP DA Sbjct: 224 AVSLHSAIQTNRESIMPAAREYPLPALKKSLAEYNRLS-GQPVTLVYMLLRDINDSPEDA 282 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L+K K + KINLI +N ++ F + SG +R G I Sbjct: 283 KALVKFAKSLFCKINLIDYNAIVNIKFKPVYTGKSELFLRSLLDSGLQVTVRKSHGASIN 342 Query: 360 AACGQLKSLSK 370 AACGQL + S+ Sbjct: 343 AACGQLVTESR 353 >gi|225871755|ref|YP_002753209.1| radical SAM enzyme, Cfr family [Acidobacterium capsulatum ATCC 51196] gi|225791340|gb|ACO31430.1| radical SAM enzyme, Cfr family [Acidobacterium capsulatum ATCC 51196] Length = 396 Score = 339 bits (871), Expect = 3e-91, Method: Composition-based stats. Identities = 136/392 (34%), Positives = 194/392 (49%), Gaps = 57/392 (14%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-N 65 L G+ EEL EAL +P R Q+ +Y + + ++ + QE+R L Sbjct: 25 RPLFGLSFEELSEALADFRLPPW----RLRQVRHALYRQWAASWSEVTTLPQELRESLEK 80 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-------------- 111 F+ P IV+ S DGT ++L+ +ETV++P Sbjct: 81 AGFAPGLPGIVETFRSVDGTERYLI-----AGHDGQTVETVWMPGGDGGEAGDGSGSDGA 135 Query: 112 --------------SRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157 R T+CVSSQ+GC++ C FC T ++RNLTA EI QV+ Sbjct: 136 GDDRPGEDSGEAAYQRATICVSSQIGCAVNCQFCLTARLGIIRNLTAGEIAGQVVAVLK- 194 Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217 +GR N+V MGMGEP N+D ++ + SD +G+ S R+ Sbjct: 195 ------------RQQVEMGRDRINLVFMGMGEPFLNYDAFMDAVRLLSDEVGIPVS--RM 240 Query: 218 TLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276 T+STSG VP I R EE LAISL+A + +R ++PINRK+ + ++DA R P L Sbjct: 241 TVSTSGIVPGILRFAEEPVRPKLAISLNAPDDIVREAVMPINRKWDIAEVLDAVRKVP-L 299 Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDI 334 R+TFEYV+L G+ND P A + ++L+ +P K+NLI +NP P Y +D+ Sbjct: 300 RAKERVTFEYVLLGGVNDQPEHAETVARLLRRANLPLKVNLIVWNPGPDVPYTMPKAEDV 359 Query: 335 VTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 F E + G + IR PRG DI AACGQLK Sbjct: 360 AAFQEYLVGKGVPAYIRRPRGRDIYAACGQLK 391 >gi|304440677|ref|ZP_07400561.1| cfr family radical SAM enzyme [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370864|gb|EFM24486.1| cfr family radical SAM enzyme [Peptoniphilus duerdenii ATCC BAA-1640] Length = 342 Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats. Identities = 111/362 (30%), Positives = 178/362 (49%), Gaps = 34/362 (9%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 + + EE++ + +IG + R Q++ + D S++ ++++ L Sbjct: 3 INDLTFEEMKSYIEEIG----EKKFRAQQLFTFFNKNKKWDLNSSSNLPKDLKSL----- 53 Query: 69 SIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 + +I +E S D T K+L + IE V + + + C+S+QVGC + Sbjct: 54 PVREIKIFEEYHSKIDETVKFLFELNDGNL-----IEGVLLKYEHGYSQCISTQVGCRMG 108 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 CSFC + +RNLT E+ Q+ L + +G ISNIV+MG Sbjct: 109 CSFCASTKGGRIRNLTPSEMAGQIYLVEN-----------------KLGINISNIVLMGS 151 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAV 246 GEPL N++NV K I D G + S R IT+S+ G VP I + + + + LAISLH+ Sbjct: 152 GEPLDNYENVIKFFDIIHDENGKNLSNRSITISSCGIVPRIYDLEKLKKPINLAISLHSP 211 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ R ++PI +Y +E ++ A ++Y + RIT EY ++K +ND DA LI+I Sbjct: 212 FDEDRKKIMPITNRYSIEEVLAASKYYSEGT-GTRITLEYTLIKDVNDREIDADELIRIT 270 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 K I +NLIP NP + K F + + G ++ IR G DI A+CGQL+ Sbjct: 271 KDIKVHVNLIPLNPIKEYNKGKTSPKGAKKFQNMLLKGGINATIRRELGSDISASCGQLR 330 Query: 367 SL 368 Sbjct: 331 RK 332 >gi|224003697|ref|XP_002291520.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220973296|gb|EED91627.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 343 Score = 339 bits (869), Expect = 6e-91, Method: Composition-based stats. Identities = 125/349 (35%), Positives = 188/349 (53%), Gaps = 33/349 (9%) Query: 29 RHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKW 88 ++ R QI WI+ +G+ MSD+ ++R +L + ++ + E++S DGTRK Sbjct: 17 KYPAFRARQIHNWIFSQGVTSIDDMSDLPLKLRTMLKERATVGSLHLEVEQVSQDGTRKR 76 Query: 89 LLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147 + IE+V +P + R T CVSSQ GC++ C FC TG R LT++EI Sbjct: 77 AYKLHD-----GQMIESVLMPYEDGRRTACVSSQAGCAMGCVFCATGQMGFARQLTSDEI 131 Query: 148 LLQVL-LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD 206 QV A L G+ G ++SN+VMMGMGEPL N+ NV ++ + Sbjct: 132 FEQVATFANELKGE---------------GERLSNVVMMGMGEPLANYRNVLAAMHRMNT 176 Query: 207 SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKY-PLE 264 L R+IT+ST G VPNI ++ EE + V LA+SLH +++ R L+P NR+Y L+ Sbjct: 177 D--LGIGARKITISTVGVVPNIKKLIEEDLQVRLALSLHCATDEERTALLPANRRYGGLD 234 Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP-----AKINLIPFN 319 L+ R Y + R+TFE+ +++G NDS A L ++L+ A +NLIP N Sbjct: 235 ELMTTIREYIRVK-KMRVTFEWALIEGQNDSKDVARTLGRLLQKHDIRPDMAHVNLIPLN 293 Query: 320 PWPGCEYLCSDQKDIVTFSECIKRS-GYSSPIRTPRGLDILAACGQLKS 367 P G S + ++ F E +++ G S+ R RG+DI A CGQLK+ Sbjct: 294 PTGGYGGGPSGRNNVHRFVEVLEKEFGISATPRMRRGIDIDAGCGQLKA 342 >gi|225619727|ref|YP_002720984.1| putative Fe-S-cluster redox enzyme [Brachyspira hyodysenteriae WA1] gi|225214546|gb|ACN83280.1| Predicted Fe-S-cluster redox enzyme [Brachyspira hyodysenteriae WA1] Length = 342 Score = 338 bits (868), Expect = 7e-91, Method: Composition-based stats. Identities = 133/369 (36%), Positives = 209/369 (56%), Gaps = 34/369 (9%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S++ + +EL + ++ P + SQI WIY + F+ MS+I + +R+LL Sbjct: 3 KKISIMNVSEDELSKFCVENNFP----KFHASQILNWIYKKYAVSFEEMSNIPKNLRNLL 58 Query: 65 NQHFSIIYPEIVDEKISCD--GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 ++++ I +I E IS D GT+K L+ + +IE+V + +K R T C+SSQV Sbjct: 59 DEYYFIHNSKI--ETISEDEYGTQKLLISLYDKK-----KIESVILNKKDRVTFCLSSQV 111 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC C+FC TG+ L RNLTA+EIL + LL R++ +K+++I Sbjct: 112 GCGYGCAFCATGSMGLSRNLTADEILAEFLLMRAVT------------------KKVNSI 153 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241 V MGMGEPL N N+ K++ + G + R IT+STSG V I ++ E ++ LA+ Sbjct: 154 VFMGMGEPLANTKNLFKAIDTINSFKGFNLGIRHITISTSGEVAGIKQLIERDLDCRLAV 213 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH++ ND+R+ ++PIN++YP+E L+ + Y + R ITFE+V++K +NDS DA Sbjct: 214 SLHSLKNDVRDKIMPINKRYPIENLMAILKRY-SRNGKRMITFEWVLIKDVNDSVNDAYR 272 Query: 302 LIKILKGIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L+ + K P K+N+IP NP ++ I+ F +K +G R +G +ILA Sbjct: 273 LVNLKKEFPFKVNVIPMNPVEHAPELQRPNKDIILRFKSILKDNGIEVVERFKQGQEILA 332 Query: 361 ACGQLKSLS 369 CGQL + Sbjct: 333 GCGQLAVKN 341 >gi|320106559|ref|YP_004182149.1| radical SAM enzyme, Cfr family [Terriglobus saanensis SP1PR4] gi|319925080|gb|ADV82155.1| radical SAM enzyme, Cfr family [Terriglobus saanensis SP1PR4] Length = 420 Score = 338 bits (867), Expect = 8e-91, Method: Composition-based stats. Identities = 129/416 (31%), Positives = 192/416 (46%), Gaps = 75/416 (18%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L GM EL E + G R Q+W +Y + + ++ + +R L Sbjct: 23 QKIALFGMALPELIERMGAWG----EKPYRARQVWDALYKQRVAALDEITVLPLALRERL 78 Query: 65 N-QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS----------- 112 + I PE+V S DGT ++L+R +ETV++P+ Sbjct: 79 ATEGVEIGLPEMVQTATSVDGTERYLMRMVD-----GETVETVWMPDGDGGERGDGSEAA 133 Query: 113 -------------------------------------RGTLCVSSQVGCSLTCSFCYTGT 135 R T+C+SSQVGC++ C FC T Sbjct: 134 VEESDEVVTADEAVDKTNGYKKPDKRNWGALAEKGYRRATICISSQVGCAVNCQFCLTAK 193 Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195 + RNLTA EI QV +G+ N+V MGMGEP N+D Sbjct: 194 LGIKRNLTAGEIAGQVAAV-------------LNRHSVKMGKDRINLVFMGMGEPFLNYD 240 Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNIL 254 S+ + + G+ R+T+STSG P+I R E + LA+SL+A ++ +R + Sbjct: 241 AFMDSVRLLVE--GVGIPDSRMTVSTSGIEPSIRRFATETVRPKLALSLNASNDAVRTEI 298 Query: 255 VPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKIN 314 +PI +K+ + ML+DA + P +TFEYVML G+ND P+ A ++ +LKG+ AK+N Sbjct: 299 MPITKKWNIAMLLDAVKTIPMGKRDW-VTFEYVMLGGVNDQPQHAREVLALLKGMHAKVN 357 Query: 315 LIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 LI +NP PG Y D + F + + G + IR PRG DI AACGQLK + Sbjct: 358 LIVWNPGPGIAYSQPDPDAVAVFQKMMIDGGMPTYIRRPRGRDIYAACGQLKRTVQ 413 >gi|78779958|ref|YP_398070.1| putative Fe-S-cluster redox protein [Prochlorococcus marinus str. MIT 9312] gi|123768932|sp|Q318R1|RLMN_PROM9 RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|78713457|gb|ABB50634.1| 23S rRNA m(2)A-2503 methyltransferase [Prochlorococcus marinus str. MIT 9312] Length = 348 Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 114/374 (30%), Positives = 180/374 (48%), Gaps = 39/374 (10%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIY--VRGIRDFQGMSDISQEVRHLL 64 ++L+G ++LE L G R QI+ WIY ++ + + + R L Sbjct: 2 KNLLGSSIKDLENIALDYG----QAAFRGRQIYSWIYNYRNKNKNIDQIEVLPLDFRKKL 57 Query: 65 NQ-HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 F + ++K++ DGT K LL IE V IP + R T C+SSQVG Sbjct: 58 KDDGFKVSELSFQEKKLANDGTLKLLLSTNDN-----ESIECVGIPTEKRLTACLSSQVG 112 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG + L R+L A EIL Q+L + + RK++NIV Sbjct: 113 CPMDCKFCATGKEGLKRSLKASEILDQILFIEN-----------------EMNRKVTNIV 155 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-------IG 236 MGMGEPL N D + S+ ++ S+R+IT+ST ++++ Sbjct: 156 FMGMGEPLLNIDELLLSIRSINED--FQISQRKITVSTVAVPKMMSKLSARSFQILGNCQ 213 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 LAISLHA + R ++P + Y ++ +I+ + + + R++FEY+ML G+ND Sbjct: 214 FTLAISLHASNQKTRETIIPSAKNYEIKNIIEDSKQFVKDTGR-RVSFEYLMLSGVNDKL 272 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 A L +L+G +NLI +N E+ + K++ F + +G + R RGL Sbjct: 273 EHANELSNLLRGFQCHVNLIQYNQIDEVEFKRASLKNLQLFQSRLSNNGITVSFRKSRGL 332 Query: 357 DILAACGQLKSLSK 370 D AACGQL+ ++ Sbjct: 333 DKNAACGQLRQNAR 346 >gi|300871714|ref|YP_003786587.1| putative Fe-S cluster redox enzyme [Brachyspira pilosicoli 95/1000] gi|300689415|gb|ADK32086.1| predicted Fe-S cluster redox enzyme [Brachyspira pilosicoli 95/1000] Length = 342 Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 128/368 (34%), Positives = 205/368 (55%), Gaps = 30/368 (8%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S++ + E+L + ++ P + SQI WIY + F MS+I +++R LL Sbjct: 3 KKISIMNVSEEDLSKFCIENNFP----KFHASQILNWIYKKYAISFDEMSNIPKDLRVLL 58 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 ++++ I +I GTRK L+ + +IE+V + + R T C+SSQVGC Sbjct: 59 DENYFIHNSKIESITEDEYGTRKLLISLYDKK-----KIESVILGKNDRVTFCLSSQVGC 113 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 C+FC TG+ L RNLTA+EIL + +L R++ +K+++IV Sbjct: 114 GYGCAFCATGSMGLSRNLTADEILAEFILMRAVT------------------KKVNSIVF 155 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243 MGMGEPL N N+ K++ + G + R IT+STSG V I ++ E ++ LA+SL Sbjct: 156 MGMGEPLANTKNLFKAIDTINSYKGFNLGIRHITISTSGEVAGIKQLIERDLDCRLAVSL 215 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H++ N++R+ ++PIN++YP+E LI+ + Y + R ITFE+V++K +NDS DA L+ Sbjct: 216 HSLKNEVRDKIMPINKRYPIENLINILKRY-SKNGKRMITFEWVLIKDVNDSVNDAYRLV 274 Query: 304 KILKGIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + K P K+N+IP NP ++ I+ F +K +G R +G +ILA C Sbjct: 275 NLKKEFPFKVNIIPMNPVEHAPELQRPNKDIILRFKSILKDNGIEVVERFKQGQEILAGC 334 Query: 363 GQLKSLSK 370 GQL ++ Sbjct: 335 GQLAVKNQ 342 >gi|309800813|ref|ZP_07694945.1| 23S rRNA m2A2503 methyltransferase [Bifidobacterium dentium JCVIHMP022] gi|308222349|gb|EFO78629.1| 23S rRNA m2A2503 methyltransferase [Bifidobacterium dentium JCVIHMP022] Length = 407 Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 124/370 (33%), Positives = 184/370 (49%), Gaps = 31/370 (8%) Query: 6 KESL--IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 K L M +E ++G+P R R Q+ Y D + SD R Sbjct: 38 KPPLHFADMSEDERIAKAKELGLP----RFRVKQLANHYYGHFDVDAEEFSDFPANKRAE 93 Query: 64 LNQHFSIIYPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + F V +++ +GT K L R + IE+V + +R TLC+SSQV Sbjct: 94 AAEAFFPTLITEVTRQVADEGTTIKTLWRLFDGSL-----IESVLMRYPTRTTLCISSQV 148 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC TG L RN++A EI+ QV +A + D + ++SNI Sbjct: 149 GCGMGCPFCATGKLGLTRNMSAGEIVEQVRVAAKAMRD---------GEVAGGPGRLSNI 199 Query: 183 VMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239 V MGMGEP+ N+ +V ++ S G S R IT+ST G VP I ++ E I V L Sbjct: 200 VFMGMGEPMGNYRSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRL 259 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA S++LR+ LVP+N+++ + ++DA Y L++ RR++ EY +++GIND A Sbjct: 260 AVSLHAPSDELRDELVPMNKRFDITQVLDAAHDYY-LASKRRVSIEYALMRGINDQAEHA 318 Query: 300 LNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR-G 355 L K L A +N IP NP G ++ S +D F + + + G+ R PR G Sbjct: 319 RLLAKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDERRFLDILHQGGHRHLARHPRAG 378 Query: 356 LD--ILAACG 363 + AACG Sbjct: 379 YRWCLRAACG 388 >gi|301167567|emb|CBW27150.1| conserved hypothetical protein [Bacteriovorax marinus SJ] Length = 366 Score = 336 bits (861), Expect = 5e-90, Method: Composition-based stats. Identities = 129/366 (35%), Positives = 195/366 (53%), Gaps = 21/366 (5%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 S EEL L + G Q+ +I++ +Y R +F+ + +S+ ++ Sbjct: 21 HSFYNQSLEELSHTLHESGFKQKS----ADEIFRLVYKRFNPNFEAVDTLSRRTIDFISN 76 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 H+ P+IV + + D T K+L+ ++E+V IP + T+C+SSQVGC++ Sbjct: 77 HYRFDLPKIVKVQNADDNTVKFLVEL-----ADGNQVESVLIPFAKKYTICLSSQVGCAM 131 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 CSFC+TG Q L RNL A EI+ Q ++A L + + NIV MG Sbjct: 132 KCSFCFTGLQGLKRNLEASEIIGQYIVAYKWLRENRPEKIASP-----------NIVFMG 180 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 GEPL NFD VKK++ I + GL R+ITLST+G++P + R E + LA+SLH+ Sbjct: 181 QGEPLHNFDQVKKAIEIFLTTEGLHLGFRQITLSTAGYLPGLERFSELPNINLALSLHSP 240 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ RN L+P+N++Y LE L + L IT+EY+++K +ND D L K L Sbjct: 241 IDEDRNKLIPLNKRYSLEKLFEKLDQIKLLKRQF-ITYEYLLIKDLNDRDEDITLLNKWL 299 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 A IN+IPFN +PG Y + F ++R G + +RT +G DILAACGQL Sbjct: 300 GQRRAIINIIPFNEFPGAPYKRPLTSKVNEFKTKLERLGLTVKVRTTKGSDILAACGQLN 359 Query: 367 SLSKRI 372 +L + Sbjct: 360 TLQSKT 365 >gi|303280559|ref|XP_003059572.1| predicted protein [Micromonas pusilla CCMP1545] gi|226459408|gb|EEH56704.1| predicted protein [Micromonas pusilla CCMP1545] Length = 406 Score = 335 bits (859), Expect = 7e-90, Method: Composition-based stats. Identities = 119/377 (31%), Positives = 188/377 (49%), Gaps = 37/377 (9%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL- 64 + L+G+ + L + + G P R Q+ +Y + ++ I + R L Sbjct: 53 RTPLLGLGVDALTKLAKEHGQPG----YRGKQLHDAVYSHRKEAIEAITQIPEAFRSSLR 108 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + +D + DGT+K LL+ + IE V + R T+CVSSQVGC Sbjct: 109 ASGVHVGRVRPIDVVAAPDGTKKVLLKLRCGSV-----IEAVGETRRRRFTVCVSSQVGC 163 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 ++ CSFC TG Q RNLT++EI+ QVL + G R+ +N+VM Sbjct: 164 AMRCSFCATGRQGFKRNLTSDEIVNQVLALEDVFG-----------------RRATNVVM 206 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISL 243 MGMGEPL N V ++ + +G R T+ST G ++++ ++ LA+SL Sbjct: 207 MGMGEPLMNLKEVLRAHRCLNRDVG--IGGRYFTISTVGVPNQLSKLAAHKLQATLAVSL 264 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA + +LR L+P + Y ++ L++ CR Y S +R+TFEY +L G NDSP A L Sbjct: 265 HAPTQELREKLIPSAKAYHVDDLLEDCRLY-KKSTGKRLTFEYTLLAGENDSPEHARALG 323 Query: 304 KILK---GIPAKINLIPFNPWPGCE--YLCSDQKDIVTFSECI-KRSGYSSPIRTPRGLD 357 ++L+ G + +NL+P+NP G E + + + F++ + K G + +R RGL+ Sbjct: 324 RLLRTRVGRGSHVNLLPWNPVTGAEDAHARPSKTAVKRFADALAKERGVTFTVRRTRGLE 383 Query: 358 ILAACGQLKSLSKRIPK 374 AACGQL R + Sbjct: 384 ADAACGQLTGSFVRKGR 400 >gi|116328894|ref|YP_798614.1| Fe-S-cluster redox enzyme [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330499|ref|YP_800217.1| Fe-S-cluster redox enzyme [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122281743|sp|Q04UG1|RLMN_LEPBJ RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|122283323|sp|Q04Z14|RLMN_LEPBL RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|116121638|gb|ABJ79681.1| Fe-S-cluster redox enzyme [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124188|gb|ABJ75459.1| Fe-S-cluster redox enzyme [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 351 Score = 335 bits (859), Expect = 7e-90, Method: Composition-based stats. Identities = 119/367 (32%), Positives = 176/367 (47%), Gaps = 31/367 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K L G +EL E ++ +G R QI+ +YV ++ + S+ ++ L Sbjct: 13 KIPLKGRTLKELSEIMVSLG----EKSFRAKQIYHGLYVNRYESWEQFTTFSKTLKEKLE 68 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS--RGTLCVSSQVG 123 S+ +V S DGT+K+ E E V+IP R T+C+SSQVG Sbjct: 69 GLCSLTQLTVVKHLKSVDGTQKFTF-----ASEQGKEFEAVWIPSGDGGRKTICISSQVG 123 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L C FC T + NL A EI+ QVL ++GD +N+V Sbjct: 124 CTLNCKFCATAKLEFQGNLKAHEIVDQVLQVEKIVGDNA-----------------TNVV 166 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242 MGMGEP N+ NV ++ SI D L+ +RIT+STSG V I R E + AIS Sbjct: 167 FMGMGEPFHNYFNVIRAASILHDPDALNLGAKRITISTSGVVNGIRRFIENKEPYNFAIS 226 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 L+ + R ++ I K+ L L+ A + + RRITFEYVM+ G++ P +A L Sbjct: 227 LNHPDPNGRLQIMDIEEKFALSELLQAAKDF-TRELKRRITFEYVMIPGVSMGPENANKL 285 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +KI + + KIN+IP N + ++++ F ++ +G R G DI AC Sbjct: 286 VKIARSLDCKINVIPLN-TEFFGWRRPTKQEVAEFITLLEPAGVPILNRRSPGKDIFGAC 344 Query: 363 GQLKSLS 369 G L S S Sbjct: 345 GMLASKS 351 >gi|300087157|ref|YP_003757679.1| Cfr family radical SAM protein [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299526890|gb|ADJ25358.1| radical SAM enzyme, Cfr family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 356 Score = 335 bits (859), Expect = 8e-90, Method: Composition-based stats. Identities = 126/373 (33%), Positives = 192/373 (51%), Gaps = 21/373 (5%) Query: 4 LKKE-SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 ++K +L+ + E + L+ IG I + ++ S + + ++H Sbjct: 1 MEKTVNLLDLSPEGIASFLVSIGEKPV---FTGK-IIRHLFECRNTIIDEPSYLPESLKH 56 Query: 63 LLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L Q E+++E S DG K L +E K R T+CVSSQ Sbjct: 57 KLRQISGHAALEVLEESKSVDGKNIKTLFGLDDGNTIESTAMEFGGSAGKIRRTVCVSSQ 116 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC + C +C TG RNL+ E++ QVL R G ++N Sbjct: 117 VGCMIGCPYCATGMNGFHRNLSPGEMIEQVLYYRGETG-------------RVGRNSLTN 163 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLA 240 +V MGMGEPL N+DNV ++S+ + G+ F R+IT+STSG VP I R+ E++ LA Sbjct: 164 VVFMGMGEPLLNYDNVVTAVSLLNSHHGMGFGARQITISTSGIVPGILRLAREDLYCQLA 223 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +S+ + +++LRN+LVP+NRKYPL LI+ACR Y L+ R++ EYV+ +G+NDS +DA Sbjct: 224 VSIQSATDELRNLLVPVNRKYPLAHLIEACREYSELT-RRKVFIEYVLFEGVNDSIQDAE 282 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 L K+L+ + INLI N + + +V F + G+ + +R RG DI A Sbjct: 283 GLAKLLEPLDCSINLIIVNNSGIGTFRPTSYDTVVAFQRLLVSKGFRTMLRLSRGTDIEA 342 Query: 361 ACGQLKSLSKRIP 373 CGQL++ RI Sbjct: 343 GCGQLRNRRLRIT 355 >gi|299143975|ref|ZP_07037055.1| radical SAM enzyme, Cfr family [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518460|gb|EFI42199.1| radical SAM enzyme, Cfr family [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 349 Score = 335 bits (859), Expect = 8e-90, Method: Composition-based stats. Identities = 113/364 (31%), Positives = 189/364 (51%), Gaps = 30/364 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 + + +E+E + G R Q++ + + + D + S++ + + + ++ Sbjct: 4 INNLYLDEIENKVKFYG----EKNFRAMQLYNFFHKQKRTDIEN-SNLPKSLITKILEYE 58 Query: 69 SIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 I I++E S D T+K+L + + I +E V + K + C+S+QVGC + Sbjct: 59 KIQTVSILEEYSSKLDETKKFLFKLEDKNI-----VEGVLMKYKHGYSQCISTQVGCRMG 113 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC + + L+RNL+A E+L QV +SNI++MG Sbjct: 114 CVFCASTKEGLIRNLSAYEMLGQVYEVEK-----------------RFNINVSNIILMGS 156 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAV 246 GEP N+DNV + L + G + S R IT+ST G V I + E + + LAISLH Sbjct: 157 GEPFDNYDNVIRFLKLVHSKEGKNLSYRNITISTCGIVDKIYELSKENLPITLAISLHNT 216 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 +N R+ ++PIN+KY +E +I AC++Y ++N+ RITFEY ++ G ND+ +A L ++ Sbjct: 217 NNISRDNIMPINKKYNIEQIIQACKNYSNMTNS-RITFEYTLIGGQNDTLENAQELKSLI 275 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 G+ A INLIP NP +QK++ F + ++ + IR G DI+A+CGQL+ Sbjct: 276 NGLKAHINLIPLNPIKEYNKKRPNQKEVEDFKKKLEALKLNVTIRRELGADIMASCGQLR 335 Query: 367 SLSK 370 + Sbjct: 336 RKYE 339 >gi|325474464|gb|EGC77651.1| ribosomal RNA large subunit methyltransferase N [Treponema denticola F0402] Length = 347 Score = 334 bits (858), Expect = 1e-89, Method: Composition-based stats. Identities = 125/371 (33%), Positives = 189/371 (50%), Gaps = 33/371 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L GM EE++ G+ + + R QI+ WI G+ F M+++S ++R L Sbjct: 7 KTALSGMFPEEIQSFC---GLKE---KFRAQQIFHWI-ASGVNSFDEMTNLSFDMRSKLK 59 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-SRGTLCVSSQVGC 124 FS+ +I + DGT K + + IETV + +K R T CVS Q GC Sbjct: 60 NDFSLFSTKIKEALKDKDGTIKLAVELYDGSV-----IETVLLTDKAKRKTACVSCQAGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC TG +RNL+A EI+ Q L G + NIV Sbjct: 115 PMKCAFCKTGQIGFLRNLSASEIVEQFLHLEREAG------------------SLDNIVF 156 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISL 243 MGMGEP+ N + K+++I + G + SKRRIT+STSG I + ++ V LA+SL Sbjct: 157 MGMGEPMLNLPEIDKAINILAHPKGRNLSKRRITISTSGLCNGIYEMADKGPEVRLAVSL 216 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 LR+ L+PIN+ L+ L A +++ SN R+T E ++KG+N + A +I Sbjct: 217 TTADETLRSELMPINKTNSLDELKQAIKYFNSKSNK-RVTLELALMKGLNTDKKAAQEVI 275 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 + KG+ INLIP+NP G + + ++ TF +K++G + R RG I ACG Sbjct: 276 EFAKGLECFINLIPWNPVEGLNFKTPSETEVRTFETYLKKAGLNISTRQKRGQSIGGACG 335 Query: 364 QLKSLSKRIPK 374 QL S + R + Sbjct: 336 QLGSTATRSNR 346 >gi|297184182|gb|ADI20301.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11] Length = 302 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 112/319 (35%), Positives = 167/319 (52%), Gaps = 19/319 (5%) Query: 53 MSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS 112 M+++S+ R LLN HF E+ + S DGT K ++ +E+V IP + Sbjct: 1 MTNLSKATRELLNAHFEFKQLEVDVMQQSNDGTIKNAVKLHDGAF-----VESVLIPTEK 55 Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172 R T CVSSQVGCSL C+FC T K +RNL +EI QV++ + Sbjct: 56 RITACVSSQVGCSLDCTFCATAGLKRMRNLDPDEIYDQVVVIDRQGKE------------ 103 Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232 GR ++NIV MGMGEPL N++NV ++ +D GL S +RITLST G I ++ Sbjct: 104 -HFGRPLTNIVFMGMGEPLLNYNNVLAAIDKITDPKGLGMSPKRITLSTIGVPKLIKKMA 162 Query: 233 EE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291 ++ + LAISLH+ + R L+P+ + + + Y R +TFEYV+ + Sbjct: 163 DDGVRFGLAISLHSAIEEKRAKLMPLAHRSTTLVDLRESLQYWYAKTGRGVTFEYVIWRD 222 Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351 IND+ DA+ L K IP K+N+I +NP Y + Q + + ++ + +R Sbjct: 223 INDTEEDAIALAKFCGAIPTKVNIIQYNPIDNGPYTQASQAAVDLYKRILEERRIIATVR 282 Query: 352 TPRGLDILAACGQLKSLSK 370 RG DI AACGQL + ++ Sbjct: 283 HSRGQDIDAACGQLANKTE 301 >gi|42527577|ref|NP_972675.1| radical SAM protein [Treponema denticola ATCC 35405] gi|81570188|sp|Q73KZ3|RLMN_TREDE RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|41818162|gb|AAS12586.1| radical SAM enzyme, Cfr family [Treponema denticola ATCC 35405] Length = 347 Score = 333 bits (855), Expect = 3e-89, Method: Composition-based stats. Identities = 124/371 (33%), Positives = 188/371 (50%), Gaps = 33/371 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L GM EE++ G+ + + R QI+ WI G+ F M+++S ++R L Sbjct: 7 KTALSGMFPEEIQSFC---GLKE---KFRAQQIFHWI-ASGVNSFDEMTNLSFDMRSKLK 59 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-SRGTLCVSSQVGC 124 FS+ +I + DGT K + + IETV + +K R T CVS Q GC Sbjct: 60 NDFSLFSTKIKEALKDKDGTIKLAVELYDGSV-----IETVLLTDKAKRKTACVSCQAGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC TG +RNL+A EI+ Q L G + NIV Sbjct: 115 PMKCAFCKTGQIGFLRNLSASEIVEQFLHLEREAG------------------SLDNIVF 156 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISL 243 MGMGEP+ N + K+++I + G + SKRRIT+STSG I + ++ V LA+SL Sbjct: 157 MGMGEPMLNLPEIDKAINILAHPKGRNLSKRRITISTSGLCKGIYEMADKGPEVRLAVSL 216 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 LR+ L+PI + L+ L A +++ SN R+T E ++KG+N + A +I Sbjct: 217 TTADETLRSELMPITKTNSLDELKQAIKYFNSKSNK-RVTLELALMKGLNTDKKAAQEVI 275 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 + KG+ INLIP+NP G + + ++ TF +K++G + R RG I ACG Sbjct: 276 EFAKGLECFINLIPWNPVEGLNFKTPSETEVRTFETYLKKAGLNISTRQKRGQSIGGACG 335 Query: 364 QLKSLSKRIPK 374 QL S + R + Sbjct: 336 QLGSTAARSNR 346 >gi|108803293|ref|YP_643230.1| hypothetical protein Rxyl_0444 [Rubrobacter xylanophilus DSM 9941] gi|122976140|sp|Q1AYW0|RLMN_RUBXD RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|108764536|gb|ABG03418.1| conserved hypothetical protein [Rubrobacter xylanophilus DSM 9941] Length = 355 Score = 332 bits (852), Expect = 6e-89, Method: Composition-based stats. Identities = 115/364 (31%), Positives = 176/364 (48%), Gaps = 28/364 (7%) Query: 14 REELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYP 73 E+EE L + G P R Q++ + + ++ + + +R L Sbjct: 19 LPEVEEVLAERGEPP----YRLRQVYAALAGSLASGWDEVASLPKGLREELAGRVPASVL 74 Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133 E+ + DGTRK+L IETV IPE+SR T+C+S+QVGC + C+FC T Sbjct: 75 ELRRISRARDGTRKYLF-----FTRDGHAIETVMIPERSRRTVCISTQVGCPMACTFCAT 129 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 G + RNL A EI QV + +++N+V+MGMGEP N Sbjct: 130 GLLGIKRNLKAREIAEQVFAVARDI----------------APERVTNVVVMGMGEPFLN 173 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRN 252 + ++L + +D G + + R I +STSG V I R +E LAISLH + R Sbjct: 174 YRETLRALRVLNDRRGFNLAARHIAVSTSGLVDKIRRFADEPEQFHLAISLHTPFEEERR 233 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312 L+P+ ++P+ L++A R+Y + R++ FEY +L G+ND R A L ++L Sbjct: 234 RLMPVAARHPIPELMNAARYYVERT-RRKLFFEYTLLAGVNDRMRHAEALAELLDHPLYH 292 Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRI 372 +NL+ FN W + + + F + G S+ +R RG DI AACGQL + R Sbjct: 293 LNLLRFN-WTDTGFSATSARRAKEFLRRARELGLSATLRPSRGQDIEAACGQLAARDARS 351 Query: 373 PKVP 376 P Sbjct: 352 PTAR 355 >gi|169333679|ref|ZP_02860872.1| hypothetical protein ANASTE_00063 [Anaerofustis stercorihominis DSM 17244] gi|169259673|gb|EDS73639.1| hypothetical protein ANASTE_00063 [Anaerofustis stercorihominis DSM 17244] Length = 342 Score = 332 bits (851), Expect = 8e-89, Method: Composition-based stats. Identities = 117/366 (31%), Positives = 183/366 (50%), Gaps = 35/366 (9%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +L G+ LEE I + + R QI+KW+Y ++ M+++S +R L + Sbjct: 2 TNLFGLN---LEEIEKIIVEEYKEPKFRAKQIFKWLYDSYVKSIDEMTNLSLSLREKLKE 58 Query: 67 HFSIIYPEIVDEKI---SCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + I + ++ + S T K+LL+ + IE V + ++ TLCVS+Q G Sbjct: 59 EYYINHLKLEKKFKEEKSS--TTKFLLKTEDDIL-----IECVLLRYEAGATLCVSTQAG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC +G L+RNLT EIL ++ L + +ISNIV Sbjct: 112 CRMGCVFCESGKCGLIRNLTKGEILNEIYLVSEI-----------------EDIRISNIV 154 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 +MG GEPL N+D V L + +D L+ SKR ITLST G I + + + + LA+S Sbjct: 155 LMGSGEPLDNYDEVVGFLKLVTDVNTLNMSKRSITLSTCGIKDKIYSLADSGLDINLALS 214 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +++R ++PI + +E ++DA +Y + RIT+EY +++G ND+ L Sbjct: 215 LHAPFHEMRESMMPIEKANNIEEVLDATFYYRSKTGR-RITYEYCLIEGKNDTIECIDKL 273 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + KG + IN+I N + K I F + ++ G + IR G I AAC Sbjct: 274 YDLFKGTDSLINVIGVN---DSSKKRVNDKYIHAFVDKLRNKGINVTIRRRLGSSINAAC 330 Query: 363 GQLKSL 368 GQLKS Sbjct: 331 GQLKSR 336 >gi|269955985|ref|YP_003325774.1| radical SAM enzyme, Cfr family [Xylanimonas cellulosilytica DSM 15894] gi|269304666|gb|ACZ30216.1| radical SAM enzyme, Cfr family [Xylanimonas cellulosilytica DSM 15894] Length = 389 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 110/371 (29%), Positives = 163/371 (43%), Gaps = 26/371 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + E A+ ++G H R Q+ + D +DI R + Sbjct: 34 RHFADLTHAERVAAVAELG----HQGFRAKQLATHYFAHYTTDPADWTDIPAAAREGMAA 89 Query: 67 HFSIIYPEIVDEKISCDGTR-KWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + GT K L IE+V + R TLC+SSQVGC Sbjct: 90 ALFPPLLTARRTLEADKGTTVKTLWGLHD-----GTRIESVLMRYPRRSTLCISSQVGCG 144 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG RNL+A E+L QV LA + IP +++N+V M Sbjct: 145 MACPFCATGQLGFTRNLSAAEMLEQVRLAMR---------SLALGEIPGGPTRLNNLVFM 195 Query: 186 GMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 G GE L N+ + + G S R IT+ST G VP + ++ E + + LA+S Sbjct: 196 GEGEGLINYRAIMTCIRTLVADAPEGFGMSARNITVSTVGLVPGMKKLAAEGLPLTLALS 255 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA +DLR+ LVPIN ++ ++ +DA R Y + R++ EY ++K +ND A L Sbjct: 256 LHAPDDDLRSELVPINTRFSVDEALDAARAYFEATGR-RVSIEYALIKDMNDHAWRADLL 314 Query: 303 IKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L +N IP NP PG + S++ F ++ G + +R RG DI Sbjct: 315 GTKLNARGKGWVHVNPIPLNPTPGSIWTASERAVEDEFVARLRGHGIPTTVRDTRGSDID 374 Query: 360 AACGQLKSLSK 370 ACGQL + + Sbjct: 375 GACGQLAAEEE 385 >gi|282882048|ref|ZP_06290689.1| radical SAM enzyme, Cfr family [Peptoniphilus lacrimalis 315-B] gi|281298078|gb|EFA90533.1| radical SAM enzyme, Cfr family [Peptoniphilus lacrimalis 315-B] Length = 348 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 112/361 (31%), Positives = 178/361 (49%), Gaps = 31/361 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L M +EL++ L + R +Q++ + + D + S++S+ +L Sbjct: 3 LNSMYLDELKDYLSS----KSEKSFRANQLYTFFHKNKRWDIEN-SNLSKSTLKILQND- 56 Query: 69 SIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 I +I+ S D T+K+L + IE V + + C+S+QVGC + Sbjct: 57 EINTIKILKIFQSKLDDTKKFLFTLDDSNV-----IEGVLMKYSFGYSQCISTQVGCRMG 111 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C+FC + L RNLT E+L QV + + G + N ++MG Sbjct: 112 CAFCASTKDGLFRNLTPAEMLNQVYIVENYFG-----------------INVKNFILMGS 154 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 GEPL NFDNV K L I G + S R IT+ST G V I ++ + + + LA+SLH Sbjct: 155 GEPLDNFDNVIKFLKILHSKEGHNTSYRNITISTCGVVDGIYKLIDSALPINLAVSLHQT 214 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ R+ ++PINRKY L L A Y L RITFEY ++KG ND+ ++ L ++ Sbjct: 215 NDLERSKIMPINRKYNLNKLKKALEDY-NLKTKNRITFEYTLIKGKNDTLKNVNELKEMF 273 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + + INLIP NP +++DI F ++ + ++ +R G DI A+CGQL+ Sbjct: 274 QNLFCHINLIPLNPIEEYNEQRPNRQDINKFKRLLEDASFNVTVRRELGSDIDASCGQLR 333 Query: 367 S 367 + Sbjct: 334 A 334 >gi|300814530|ref|ZP_07094786.1| 23S rRNA m2A2503 methyltransferase [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511357|gb|EFK38601.1| 23S rRNA m2A2503 methyltransferase [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 348 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 113/361 (31%), Positives = 178/361 (49%), Gaps = 31/361 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L M +EL++ L G R +Q++ + + D + S++S+ + Q+ Sbjct: 3 LNSMYLDELKDYLSSKG----EKSFRANQLYTFFHKNKRWDIEN-SNLSKSTL-KIIQND 56 Query: 69 SIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 I +I+ S D T+K+L + IE V + + C+S+QVGC + Sbjct: 57 EINTIKILKIFQSKLDTTKKFLFTLDDSNV-----IEGVLMKYNFGYSQCISTQVGCRMG 111 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C+FC + L RNLT E+L QV + + G + N ++MG Sbjct: 112 CAFCASTKDGLFRNLTPAEMLNQVYIVENYFG-----------------INVKNFILMGS 154 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 GEPL NFDNV K L I G + S R IT+ST G V I ++ + + + LA+SLH Sbjct: 155 GEPLDNFDNVIKFLKILHSKEGHNTSYRNITISTCGVVDGIYKLIDSALPINLAVSLHQT 214 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ++ R+ ++PINRKY L L A Y L RITFEY ++KG ND+ ++ L + Sbjct: 215 NDLERSKIMPINRKYNLNKLKKALEDY-NLKTKNRITFEYTLIKGKNDTLKNVNELKDMF 273 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + + INLIP NP +++DI F ++ + ++ +R G DI A+CGQL+ Sbjct: 274 QNLFCHINLIPLNPIEEYNEQRPNRQDINKFKRLLEDASFNVTVRRELGSDIDASCGQLR 333 Query: 367 S 367 + Sbjct: 334 A 334 >gi|315187026|gb|EFU20783.1| radical SAM enzyme, Cfr family [Spirochaeta thermophila DSM 6578] Length = 354 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 118/375 (31%), Positives = 183/375 (48%), Gaps = 31/375 (8%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M ++ SL G++ EE+ E L R R QI++WI+ + I F GM+ + + Sbjct: 1 MRTRERLSLSGLLPEEISELL------PMEPRYRAIQIFEWIHAKRILSFSGMTTLPSRL 54 Query: 61 RHLLNQHFSIIYPEIVD-EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119 R L+ + + I + D T K +R I V V K R T C+S Sbjct: 55 REELSSSYHVRGATIHALVQDPGDETIKAQVRLQDGQIVEAV----VLTDGKGRKTACLS 110 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 +Q GC++ C+FC TG RNLT EI+ Q L+ + G + Sbjct: 111 TQAGCAMGCAFCKTGQLGFSRNLTPGEIVDQWLILQDTAG------------------PL 152 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238 S+IV MGMGEPL N N++K++SI S G S RRIT+ST G VP I + EE V Sbjct: 153 SHIVFMGMGEPLLNLANLRKAISILSHERGSRLSLRRITVSTCGIVPGILSLAEEGPHVR 212 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA SL + ++R L+P+ ++PL+ + +A Y + RIT E V ++G+ +P + Sbjct: 213 LAFSLTSARPEVRKQLMPVEARHPLDHVKEALLKYQAATGK-RITLEVVAIEGLTCTPEE 271 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 + + +G+ +N+IP+NP PG Y + +F + + + +R +G I Sbjct: 272 SRAIAGFAEGLRVLVNVIPWNPVPGLPYRPPSPAALSSFVSSLTKKALTVTVRYRKGQHI 331 Query: 359 LAACGQLKSLSKRIP 373 ACGQL ++ R Sbjct: 332 HGACGQLGVVTPRKT 346 >gi|294056045|ref|YP_003549703.1| radical SAM enzyme, Cfr family [Coraliomargarita akajimensis DSM 45221] gi|293615378|gb|ADE55533.1| radical SAM enzyme, Cfr family [Coraliomargarita akajimensis DSM 45221] Length = 351 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 121/368 (32%), Positives = 188/368 (51%), Gaps = 28/368 (7%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIR-DFQGM-SDISQEVRHLL 64 +L G+ + LE+ L + H ++ + + I D + + + R L Sbjct: 3 TTLEGLRFDALEQRLAAAEVNPVH----AKAVFNAVQRKLIEGDLSSVETLLPPVQRWLA 58 Query: 65 NQHFSIIY-PEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 + + E E S DG T K+LL+ E+E+V + R T C+SSQV Sbjct: 59 AEDAPVRCALEQTAETPSADGYTHKYLLKL-----ADGAEVESVRMGFPGRFTACLSSQV 113 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC++ C FC TG R L+A EI+ Q L L + G ++ NI Sbjct: 114 GCAMGCVFCATGQMGFSRQLSAGEIVAQALHVERRLRE-------------DFGERLRNI 160 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAI 241 VMMGMGEPL NF+ + +L I +D+ GL+ R+ +ST G+VP I ++ + LA+ Sbjct: 161 VMMGMGEPLHNFEPLMDALDILTDTRGLNIGPARVAISTVGYVPGIRKLMQHAKRYSLAV 220 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH S++ R L+PIN+++PL L++ CR Y + A R+ F + ++KG+NDS A Sbjct: 221 SLHGASDEERGKLIPINKRWPLAELLETCREYSQVKKA-RVFFAWTLIKGVNDSDDHAQR 279 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L +L+G+ A +NLIP NP ++ + F E I+ +G S +R RG+D+ A Sbjct: 280 LAALLQGMDAHVNLIPLNPTDDFSGEAPEEARVRAFQEIIQAAGLPSTVRQRRGIDVAAG 339 Query: 362 CGQLKSLS 369 CGQLK+ Sbjct: 340 CGQLKAKK 347 >gi|168043878|ref|XP_001774410.1| predicted protein [Physcomitrella patens subsp. patens] gi|162674262|gb|EDQ60773.1| predicted protein [Physcomitrella patens subsp. patens] Length = 372 Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats. Identities = 124/378 (32%), Positives = 184/378 (48%), Gaps = 48/378 (12%) Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76 L+ L +IG+ HV IW + + + + ++ + F + ++ Sbjct: 16 LKWELERIGVKALHVFT----IWTHVLAHPDTEAHDVPGLPFAAIDMIKEKFKTLTSQVK 71 Query: 77 DEKISCDGTR-KWLLRFPARCIGGPVEIETVYIPEK--------------SRGTLCVSSQ 121 D++ S DGT K L++ G +E V + SR TLCVSSQ Sbjct: 72 DQETSADGTTTKLLIQLQ-----GGQSVEAVIMRHDAGAGKYAGGPRQGGSRATLCVSSQ 126 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC + C+FC TGT L NL+A EI+ Q++ A + I N Sbjct: 127 VGCQMGCTFCATGTMGLKGNLSAGEIVEQLVHASQVT-------------------PIRN 167 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLA 240 IV MGMGEPL N+ +V + + I + S IT+ST G +P I + ++ V LA Sbjct: 168 IVFMGMGEPLNNYKSVVEGIQIMT-GRCFGLSPSHITVSTVGVIPRILSIANDLPGVNLA 226 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA + +LR +VP + YPL L+ A Y +S RR+ EYVML GINDS A Sbjct: 227 LSLHAPTQELRCQIVPTAKAYPLHKLMAALNSYQTIS-RRRVLVEYVMLAGINDSDEVAH 285 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLDIL 359 L +LK +NLIP+NP +Y + Q+D+ F + ++ G + IR G DI Sbjct: 286 QLGTLLKDHNVTLNLIPYNPATSSDYKPTSQEDLTRFQKILRGVHGVRTTIRQEMGQDIA 345 Query: 360 AACGQLKSLSKRIPKVPR 377 ACGQL +S+ + + P+ Sbjct: 346 GACGQL-VISQSVKQSPK 362 >gi|323453959|gb|EGB09830.1| hypothetical protein AURANDRAFT_12530 [Aureococcus anophagefferens] Length = 323 Score = 329 bits (843), Expect = 5e-88, Method: Composition-based stats. Identities = 117/345 (33%), Positives = 175/345 (50%), Gaps = 32/345 (9%) Query: 31 VRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH-FSIIYP--EIVDEKISC-DGTR 86 + R QI +WIY +G+ DF MS++ ++ R L ++ ++ E++S DGT Sbjct: 1 PKFRAKQIHEWIYDKGVHDFDAMSNLPKKFRDDLKARGATVGGTIAKLRVEQVSQRDGTI 60 Query: 87 KWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAE 145 K F + +E+V +P + R T C+SSQ GC + C+FC TG L R+LTA Sbjct: 61 KRAYEFRDGSV-----VESVLMPYEDGRRTACISSQAGCGMGCTFCATGQMGLTRHLTAA 115 Query: 146 EILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS 205 EI Q A + G ++SN+V MGMGEPL N+ NV + + Sbjct: 116 EIFEQ---AARFSRELSAR-----------GERLSNVVFMGMGEPLANYKNVMAAARRIN 161 Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLE 264 D L R IT+ST G I ++ E+ + V LA+SLH ++ R+ ++P+N +Y LE Sbjct: 162 DE--LGVGARHITISTVGLARGIGKLAEDPLQVTLAVSLHQATDAARSAIMPVNDRYDLE 219 Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG---IPAKINLIPFNPW 321 L+ A R Y + RR+TFE+ + G ND A L +LK A +N+IP NP Sbjct: 220 TLLGAVRDYQAAT-RRRVTFEWAAIAGENDDVDAARTLGALLKKHGIRDAHVNVIPLNPT 278 Query: 322 PGCEYLCSDQKDIVTFSECIK-RSGYSSPIRTPRGLDILAACGQL 365 G + + F + ++ G S+ R RG+DI A CGQL Sbjct: 279 KGYGGKRAKNGAVDRFCKTLEAEFGVSATPRVRRGIDIDAGCGQL 323 >gi|308810124|ref|XP_003082371.1| from E. coli sequence gb|U02965. (ISS) [Ostreococcus tauri] gi|116060839|emb|CAL57317.1| from E. coli sequence gb|U02965. (ISS) [Ostreococcus tauri] Length = 602 Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats. Identities = 134/365 (36%), Positives = 199/365 (54%), Gaps = 28/365 (7%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRD-FQGMSDISQEVRHLLNQH 67 L GM R EL L G R ++ +Y + F+G ++ L + Sbjct: 85 LKGMRRSELARWLEATGERAT----RADGLFATMYRDLSMNAFEGDGRFGEKFASRLERV 140 Query: 68 FSI-IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 ++ + + + + DGTRK +E+V IP R T+CVSSQ+GC++ Sbjct: 141 ATMDGDLRLGEVRRASDGTRKVTYALAD---DSGGIVESVLIPSGRRTTVCVSSQLGCAM 197 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC+T T L +NL+A +I+ QV+ AR + + G ++SN+V MG Sbjct: 198 NCQFCFTATMGLRKNLSAAQIVEQVVRARRMCDE---------------GEEVSNVVFMG 242 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MGEPL N D V K++ I D GL+FS+ ++T+STSG VP + R E LA+SL+A Sbjct: 243 MGEPLHNIDEVLKAVDILLDPRGLAFSRNKVTVSTSGLVPQMERFLTESEASLAVSLNAT 302 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLS----NARRITFEYVMLKGINDSPRDALNL 302 ++ +RN ++PINRKY L+ L+ R + + R++ FEY+ML G+NDS DA L Sbjct: 303 TDYIRNWIMPINRKYNLDSLLGLLRREFPRTDLGRHQRQVFFEYIMLAGVNDSDEDADRL 362 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 I+I K +P KINLI FN G E+ CSDQ+ I F + + +G + IR RG + ++AC Sbjct: 363 IEIAKSLPCKINLIYFNTHDGAEFKCSDQERIAAFRQRVSDAGVTCTIRVSRGDEEMSAC 422 Query: 363 GQLKS 367 GQL S Sbjct: 423 GQLGS 427 >gi|255077056|ref|XP_002502181.1| predicted protein [Micromonas sp. RCC299] gi|226517446|gb|ACO63439.1| predicted protein [Micromonas sp. RCC299] Length = 395 Score = 327 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 127/378 (33%), Positives = 182/378 (48%), Gaps = 42/378 (11%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVR-GIRDFQGMSDISQEVRHLL- 64 +L+G+ +EL E + +PQ R QI IY +GM + R L Sbjct: 40 RTLLGLGLDELRELSAEFALPQW----RGQQIHDAIYGEMRKTTIEGMQQLPLGFRQALV 95 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP------EKSRGTLCV 118 + + E V+ DGTRK L I IE V IP + R T+CV Sbjct: 96 DAGYETGRREPVEIVSDEDGTRKALFELRCGSI-----IEAVGIPVERAKGRRRRFTVCV 150 Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 SSQVGC++ CSFC TG Q RNLT++EI+ QVL + G R+ Sbjct: 151 SSQVGCAMRCSFCATGRQGFRRNLTSDEIVNQVLSMEDVFG-----------------RR 193 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGV 237 +N+VMMGMGEPL N V ++ + +G R T+ST G ++++ + Sbjct: 194 ATNVVMMGMGEPLLNLREVLRAHRCLNRDVG--IGGRYFTISTVGVPNALSKLAAHRLQA 251 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 LA+SLHA + +LR L+P + +PL+ L++ R Y + R+TFEY +L G NDS Sbjct: 252 TLAVSLHAPTQELRERLIPSAKAFPLDALLEEVRMYRKATGR-RVTFEYTLLAGENDSED 310 Query: 298 DALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI-KRSGYSSPIRTP 353 A L K+L+ G INL+P+NP G + + + F + + G S +R Sbjct: 311 HARALAKLLRSKVGRGCHINLLPWNPVAGANHQRPSKSAVNRFCDVLAAERGVSYSVRAT 370 Query: 354 RGLDILAACGQLKSLSKR 371 RGL AACGQL +R Sbjct: 371 RGLVAQAACGQLTGAFER 388 >gi|189485422|ref|YP_001956363.1| hypothetical protein TGRD_419 [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|205829922|sp|B1H070|RLMN_UNCTG RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|170287381|dbj|BAG13902.1| conserved hypothetical protein [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 350 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 119/367 (32%), Positives = 195/367 (53%), Gaps = 34/367 (9%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+ ++ + + A+ P R +QI +WIY + F+ ++I +E+R+ L+ Sbjct: 9 KKYILDLNDAQFNRAVK----PIIEQDYRINQIIEWIYAKKAVSFESFTNIPKELRNKLD 64 Query: 66 QHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F + +IV ++ S D T ++ R + V++P + ++C+SSQ+GC Sbjct: 65 EKFFLRTLKIVKKEKSLIDSTIRYTFRTADKKY-----FFAVFLPANGKNSVCISSQIGC 119 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC +G KL RNL+ EI+ Q+L + + KIS I+ Sbjct: 120 PIMCAFCSSGKTKLARNLSRGEIIEQILQVENDTKE-----------------KISGILF 162 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MGMGEP+ NF+N+ L+ S KR IT+S+ G VP + ++ ++ GV LA+SL Sbjct: 163 MGMGEPMLNFNNLISVLNSLLSSKEFGIGKRHITVSSVGIVPAVKKLADDNFGVRLALSL 222 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HAV R LVP N + +E ++ A ++Y +N+ +T EYV++KGIN S DA L Sbjct: 223 HAVDERQRKKLVPDNLGFSIEDILKAGKYYLKKTNSH-LTIEYVLVKGINISSADAHKLA 281 Query: 304 KILK-----GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 ++LK ++NLIPFNP ++ D+K I F +K +G + +R +G +I Sbjct: 282 RLLKRCDLINSDVQVNLIPFNPVTDVQFQRPDKKSINKFKSILKLNGITVNVRQSKGANI 341 Query: 359 LAACGQL 365 AACGQL Sbjct: 342 NAACGQL 348 >gi|330975900|gb|EGH75966.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 261 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 124/268 (46%), Positives = 169/268 (63%), Gaps = 19/268 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ ++E+E+ IG R R Q+ KWI+ G+ DF M+++S+ +R L Sbjct: 7 KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 63 ACAEVRGPEVVSEDISSDGTRKWVVRVES-----GSCVETVYIPQGKRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV +A G P D R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY 273 ++ LRN LVP+N+KYPL++L+++CR Y Sbjct: 228 PNDALRNQLVPLNKKYPLKVLLESCRRY 255 >gi|307718490|ref|YP_003874022.1| radical SAM enzyme, Cfr family [Spirochaeta thermophila DSM 6192] gi|306532215|gb|ADN01749.1| radical SAM enzyme, Cfr family [Spirochaeta thermophila DSM 6192] Length = 354 Score = 326 bits (837), Expect = 3e-87, Method: Composition-based stats. Identities = 116/375 (30%), Positives = 184/375 (49%), Gaps = 31/375 (8%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M ++ SL G++ E++ E L R R+ QI++WI+ + I F GM+ + + Sbjct: 1 MRTRERFSLSGLLPEDISELLTA------EPRYRSLQIFEWIHAKRISSFTGMTTLPSRL 54 Query: 61 RHLLNQHFSIIYPEIVDE-KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119 R L+ + + + + D T K +R I V V K R T C+S Sbjct: 55 REELSSSYHVRGASLHALLQDPGDETIKAQVRLQDGQIVEAV----VLTDGKGRKTACLS 110 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 +Q GC++ C+FC TG RNLT EI+ Q L+ + G + Sbjct: 111 TQAGCAMGCAFCNTGQLGFSRNLTPGEIVDQWLILQDTAG------------------PL 152 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238 S+IV MGMGEPL N N++K++SI S G S RRIT+ST G VP I + EE V Sbjct: 153 SHIVFMGMGEPLLNLANLRKAISILSHERGSRLSLRRITVSTCGIVPGILSLAEEGPHVR 212 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA SL + ++R L+P+ ++PL+ + +A Y + RIT E V ++G+ +P + Sbjct: 213 LAFSLTSARPEVRKQLMPVEARHPLDHVKEALLRYQAATGK-RITLEVVAIEGLTCTPEE 271 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 + + +G+ +N+IP+NP PG Y + +F + + + +R +G I Sbjct: 272 SRAIAGFAEGLRVLVNVIPWNPVPGLPYRPPSPAALSSFVSSLTKKALTVTVRYRKGQHI 331 Query: 359 LAACGQLKSLSKRIP 373 ACGQL ++ R Sbjct: 332 HGACGQLGVVTPRKT 346 >gi|38175091|dbj|BAD01056.1| hypothetical protein [Pseudomonas putida] Length = 284 Score = 326 bits (837), Expect = 3e-87, Method: Composition-based stats. Identities = 127/268 (47%), Positives = 166/268 (61%), Gaps = 19/268 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ + E+E+ IG R R Q+ KWI+ G+ DF M+++ + +R L Sbjct: 7 KINLLGLTQPEMEQFFDSIG----EKRFRAGQVMKWIHHFGVSDFAAMTNVGKVLREKLE 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 I PE+V E IS DGTRKW++R + +ETVYIP RGTLCVSSQ GC+ Sbjct: 63 AVAEIRPPEVVSEDISADGTRKWVIR-----VASGSCVETVYIPTDDRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV LA G P D R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWLANKSFGTVPAKVD----------RAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFDNV ++ I D +G SKRR+TLSTSG VP I + + I V LA+SLHA Sbjct: 168 GMGEPLLNFDNVIAAMKIMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHA 227 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHY 273 +++LRN LVPIN+KYPL+ML+++C Y Sbjct: 228 PNDELRNKLVPINKKYPLKMLLESCMGY 255 >gi|159483801|ref|XP_001699949.1| hypothetical protein CHLREDRAFT_97359 [Chlamydomonas reinhardtii] gi|158281891|gb|EDP07645.1| predicted protein [Chlamydomonas reinhardtii] Length = 368 Score = 326 bits (837), Expect = 3e-87, Method: Composition-based stats. Identities = 119/378 (31%), Positives = 175/378 (46%), Gaps = 45/378 (11%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIY--VRGIRDFQGMSDISQEVRHL 63 + L + ELEE +G P + R Q+++W+Y + IR+ + Sbjct: 1 RVMLKNLPLPELEEWCASVGEPPK----RAKQLYRWLYGNRKWIRNLDQADSDASAFSGA 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPV-------EIETVYIPEKSR--- 113 ++ + DGTRK + GG +ETV IP +R Sbjct: 57 FKAKVLAGGLQLQSVHTARDGTRKLVFALVGDWEGGDGPAGSARGTVETVLIPMTNRQGQ 116 Query: 114 ---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 T C+S+QVGC++ C FCYTG L+ NL+ +I+ QV+ AR L + Sbjct: 117 NLRYTACLSTQVGCAMNCQFCYTGRMGLLGNLSTAQIVEQVVEARRYLAE---------- 166 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230 V I+NIV MGMGEPL N+D V ++ I + GL S+ +I +ST G VP + R Sbjct: 167 --QEVQIPIANIVFMGMGEPLHNYDAVMSAIEILAT--GLELSRNKIIVSTVGLVPEMRR 222 Query: 231 VGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH---YPGLSNARRITFEYV 287 LA +R+ +VP NR+YPL+ L+ A R Y + EYV Sbjct: 223 FIASGRAKLA---------VRDWIVPTNRRYPLDQLLGALREAFPYGKRKGDDFVVIEYV 273 Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYS 347 +L G+ND+ DA L+ + I +NLI FNP G ++ S D+ F +G Sbjct: 274 LLAGVNDTLADAERLLALTSDIYCLVNLIVFNPHDGTQFKRSSDDDVRAFRAVFLAAGRP 333 Query: 348 SPIRTPRGLDILAACGQL 365 +R +G D +AACGQL Sbjct: 334 CTVRASKGDDEMAACGQL 351 >gi|21674009|ref|NP_662074.1| florfenicol resistance protein, putative [Chlorobium tepidum TLS] gi|81791215|sp|Q8KD71|RLMN_CHLTE RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|21647156|gb|AAM72416.1| florfenicol resistance protein, putative [Chlorobium tepidum TLS] Length = 374 Score = 326 bits (836), Expect = 4e-87, Method: Composition-based stats. Identities = 124/378 (32%), Positives = 192/378 (50%), Gaps = 37/378 (9%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + ++ + R+EL E L ++G P R +Q+ +W+Y F+ MS +S+++R L Sbjct: 22 RLNIRRLGRKELTELLTRLGEPA----YRANQLHRWLYSNQALRFEEMSTLSKQLRQKLA 77 Query: 66 QHFSIIYPEIV-DEKISCDG-------TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLC 117 + I +V E+ + D T K+L++ + +E+V IP + R T C Sbjct: 78 SEWIIHPASLVGTERETTDASLVTGNPTAKFLIKLEDNEL-----VESVLIPSEERITAC 132 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 +SSQ+GC L C+FC TG RNLTA EI QV L R Sbjct: 133 ISSQIGCPLRCTFCATGHMGFRRNLTASEITDQVFLLEK-------------EAQKRHWR 179 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASD-SMGLSFSKRRITLSTSGFVPNIARVGEE-I 235 ++NIV MGMGEPL N DNV +S+ ++ S S+R+IT+ST G + R+ + Sbjct: 180 GLTNIVFMGMGEPLLNLDNVLESIGTLTEKDYQFSISERKITISTVGLPVEMDRIARSGL 239 Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 LAISLH+ +R ++PI L+ L A Y ++ ++ +T Y++L+GINDS Sbjct: 240 KTKLAISLHSADQLIRERMMPIAADITLDKLAKAINSYNSVT-SQPVTLVYMLLEGINDS 298 Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYL--CSDQKDIVTFSECIKRSGYSSPIRTP 353 P DA L++ K + KINLI +N ++ CS K + F + + +G +R Sbjct: 299 PEDARKLVRFAKRVLCKINLIDYNSIVTLKFKPGCSSSKTM--FIQQLLDAGLLVTVRKS 356 Query: 354 RGLDILAACGQLKSLSKR 371 +G I AACGQL + R Sbjct: 357 QGATINAACGQLATRPVR 374 >gi|299138881|ref|ZP_07032058.1| radical SAM enzyme, Cfr family [Acidobacterium sp. MP5ACTX8] gi|298599035|gb|EFI55196.1| radical SAM enzyme, Cfr family [Acidobacterium sp. MP5ACTX8] Length = 406 Score = 325 bits (833), Expect = 7e-87, Method: Composition-based stats. Identities = 127/422 (30%), Positives = 204/422 (48%), Gaps = 79/422 (18%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-N 65 +L G EL E + +G R Q+++ +Y + + + ++ +SQE+R L + Sbjct: 2 HALFGKTLPELTELMAGLG----QKPYRARQVFEALYKQRVGLVEDVTTLSQELRDRLTS 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP---------------- 109 + F+I PEI S DGT ++L+R +ETV++P Sbjct: 58 EGFAIGLPEIAQTAKSVDGTERYLMRM-----ADGETVETVWMPDGDGGERGDGSEAAEE 112 Query: 110 -----------------------------------EKSRGTLCVSSQVGCSLTCSFCYTG 134 R T+C+SSQVGC++ C FC T Sbjct: 113 ESAEVVVAEEAVDGGYWSRRGNGRDRSNFGTLAEQGFRRATICISSQVGCAVNCQFCLTA 172 Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194 + RNLTA EI QV + G + I N+V MGMGEP N+ Sbjct: 173 KLGIKRNLTAGEIAGQVAAVLNRHRIQIGKDRI-------------NLVFMGMGEPFLNY 219 Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNI 253 + +S+ + + G+ + R+T+STSG +P I +E + LA+SL+A ++ +R Sbjct: 220 EQFMQSVRVLVE--GIGIPESRMTVSTSGILPGIEAFAKETMRPKLALSLNASNDVVRER 277 Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313 ++PI RK+ + L++A + P L +TFEYV+L +ND P A ++++L GI AK+ Sbjct: 278 IMPITRKWNIAALLEAVQKIP-LRTREWVTFEYVLLGEVNDQPEHAREVLELLDGIRAKV 336 Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL-KSLSKRI 372 NLI +NP PG +Y D+ F + + G ++ IR PRG DI AACGQL +++++ Sbjct: 337 NLIVWNPGPGIDYHQPKPADVAVFQKMLIEGGIATYIRRPRGRDIYAACGQLKRTVAEEK 396 Query: 373 PK 374 P+ Sbjct: 397 PQ 398 >gi|218961533|ref|YP_001741308.1| putative radical SAM-dependent enzyme (yfgB) [Candidatus Cloacamonas acidaminovorans] gi|167730190|emb|CAO81102.1| putative radical SAM-dependent enzyme (yfgB) [Candidatus Cloacamonas acidaminovorans] Length = 350 Score = 325 bits (833), Expect = 9e-87, Method: Composition-based stats. Identities = 118/360 (32%), Positives = 184/360 (51%), Gaps = 22/360 (6%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 ++ +M E+L ++++ R Q+ W+Y + + + M+++ +E R L Sbjct: 3 TNIFSLMPEDLAKSIISR--QPDLPEYRIKQVLSWLYKFYLNEPEKMTNLPEEFRAFLKT 60 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 ++S PEI + +S DG K+ L I IE+V IP + + TLC+S+QVGC+ Sbjct: 61 NYSFFLPEIESKLVSQDGAVKYRLLLEDGKI-----IESVLIPAEKKNTLCLSTQVGCAR 115 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG L+RNL +EI+ QV++A + S K++N+V+MG Sbjct: 116 NCKFCATGKMGLIRNLATQEIIGQVIIASK-------------ELKNSGTAKLTNLVLMG 162 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 MGEP+ N NV +L I + G SFS RRIT+ST G VP I + + I LA+SL + Sbjct: 163 MGEPMDNLKNVLMALQILQSNAGFSFSPRRITVSTCGVVPGIIALADSGIKAKLALSLTS 222 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 R L+P++ +Y L L A +Y + + RIT EY+++ N D L K Sbjct: 223 AIQSKRRKLMPVSDQYNLIQLKQALLYYLRKT-SFRITIEYILIPNFNMDSEDLAALRKF 281 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + KIN IP+NP + + +I F + ++ + +R RG DI ACGQL Sbjct: 282 TGDLSCKINFIPYNPGRNSPFRAPTETEIKDFMQRAQKLPQAITLRKSRGADIFGACGQL 341 >gi|149200056|ref|ZP_01877081.1| YloN [Lentisphaera araneosa HTCC2155] gi|149136814|gb|EDM25242.1| YloN [Lentisphaera araneosa HTCC2155] Length = 345 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 112/366 (30%), Positives = 178/366 (48%), Gaps = 29/366 (7%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 M RE ++ + + +P + R Q+ + + F +++ +++R+ L + ++ Sbjct: 1 MNRERIQTIVDEYKLP----KFRAKQLKEAFFEHHYSSFDQLTNFPKDLRNKLTEENQVL 56 Query: 72 YPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYI-PEKSRGTLCVSSQVGCSLTCS 129 + S D T K LL ++IE+V + P+ T C+SSQVGC++ CS Sbjct: 57 CLTVNKVFASSDQVTYKALLELHD-----GLKIESVLMSPKPGLWTACISSQVGCAMKCS 111 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 FC TGT L RNLT+EEI QVL R + D +++N+V MGMGE Sbjct: 112 FCATGTMGLTRNLTSEEISDQVLFWRQFIAKNDIDTD-----------RLNNVVYMGMGE 160 Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248 PL N V S+ + R I++STSG + + + E+ V LA+SLHA + Sbjct: 161 PLHNTKEVFSSIEELTAEDSFKIGSRHISVSTSGLLKGVKEMAEKFPQVNLALSLHAAKD 220 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 +LR+ ++PIN+ + LE + Y ++ ++ EYV+L+G N+ A+ L K LK Sbjct: 221 ELRSSIMPINKAFDLEKIRTCLDEYIDSTHR-KVFIEYVLLEGENNELSHAVELSKFLKS 279 Query: 309 IP----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 + NLI +N E+ S ++ F +K G S IR G DI ACGQ Sbjct: 280 LKRPELTHTNLIVYNET-DSEHKGSTKQKADQFRNHLKSKGLSVTIRKNLGRDIDGACGQ 338 Query: 365 LKSLSK 370 L + Sbjct: 339 LAVKEE 344 >gi|224418821|ref|ZP_03656827.1| hypothetical protein HcanM9_06035 [Helicobacter canadensis MIT 98-5491] gi|313142339|ref|ZP_07804532.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313131370|gb|EFR48987.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] Length = 292 Score = 324 bits (831), Expect = 2e-86, Method: Composition-based stats. Identities = 124/308 (40%), Positives = 172/308 (55%), Gaps = 22/308 (7%) Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-SRGTLCVSSQV 122 L ++F EI ++ S DG+ K+L + E V++ K + TLC+SSQV Sbjct: 1 LKENFISNAVEIAKKEQSSDGSVKYLFKTADNLT-----YEAVFLKMKEDKFTLCLSSQV 55 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + CSFC T VRNL A E++ QV + K NI Sbjct: 56 GCKVGCSFCLTAKGGFVRNLNAGEMVYQVFAIKKDQNI--------------PSNKAVNI 101 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241 V MGMGEPL N +NV K + I S+ GLS S+RR T+STSG P I ++G ++GV LAI Sbjct: 102 VYMGMGEPLDNLENVTKCIQILSELDGLSISRRRQTISTSGIAPKIKKLGALDLGVQLAI 161 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHAV ++LR L+PIN+ Y ++ +ID +P + + +R+ FEY+M+ GINDS A Sbjct: 162 SLHAVDDELRTKLMPINKAYNIQNIIDEVVAFP-IDSRKRVMFEYLMIDGINDSLECAKK 220 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L+ +L I AK+NLI FNP G Y ++ + F E + + G IR +GLDI AA Sbjct: 221 LVALLNKIKAKVNLIYFNPHEGSLYKRPSKEKVEAFREYLLKKGLLCTIRESKGLDISAA 280 Query: 362 CGQLKSLS 369 CGQL+ Sbjct: 281 CGQLREKE 288 >gi|196233391|ref|ZP_03132235.1| radical SAM enzyme, Cfr family [Chthoniobacter flavus Ellin428] gi|196222531|gb|EDY17057.1| radical SAM enzyme, Cfr family [Chthoniobacter flavus Ellin428] Length = 367 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 130/377 (34%), Positives = 185/377 (49%), Gaps = 30/377 (7%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 ++ + +L + L + + + H +W+ +Y G D S+ + Sbjct: 7 LSTINYPTLTDLPFPALAQEMDGLSPVHTHA------LWRALYREGATDLARRSEFLPPL 60 Query: 61 RHLLNQ---HFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTL 116 R L+ + PE+V + S DG TRK+LLR IETV + + R T Sbjct: 61 RRWLDAATARLPVDVPELVADTASTDGLTRKFLLRL-----ADAQTIETVLMSYRGRYTA 115 Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176 CVS+Q GC++ C FC TG R+L EI+ QVL A+ ++ Sbjct: 116 CVSTQAGCAMGCVFCATGQMGFTRHLRPGEIVAQVLHAQR-------------TLLARSE 162 Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-I 235 + N+V+MGMGEPL N+D+V +L I SD GL+ IT+ST G VP I R+ EE Sbjct: 163 PGLRNLVLMGMGEPLHNYDSVMTALEIISDRRGLNIGPGHITISTVGVVPGILRLAEEQR 222 Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 LA+SLH S + R+ LVP +R++ L LI ACR Y + RI FE+ ++ G NDS Sbjct: 223 PYHLAVSLHGASEEERSALVPASRRWSLAELIAACRTYGAKTGR-RIFFEWTLIAGQNDS 281 Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 P A L +L GI A +NLIP NP G S F +K + S +R RG Sbjct: 282 PAQAARLAALLAGIDAHVNLIPLNPTGGFAGTASASAAANEFQHTLKAANIPSTVRQRRG 341 Query: 356 LDILAACGQLKSLSKRI 372 +D+ A CGQL+ R Sbjct: 342 IDVAAGCGQLRVEKGRT 358 >gi|167768548|ref|ZP_02440601.1| hypothetical protein CLOSS21_03107 [Clostridium sp. SS2/1] gi|167710072|gb|EDS20651.1| hypothetical protein CLOSS21_03107 [Clostridium sp. SS2/1] Length = 250 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 97/267 (36%), Positives = 149/267 (55%), Gaps = 19/267 (7%) Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167 + K ++C+SSQ GC + C FC + L RNLT E+L Q+ + Sbjct: 1 MKYKHGNSVCISSQAGCRMGCKFCASTLGGLDRNLTPSEMLSQIYYIQR----------- 49 Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227 ++SN+VMMG GEP+ N+DNV + L + + GL+ S+R IT+ST G VP Sbjct: 50 ------DTEERVSNVVMMGTGEPMDNYDNVLRFLELITSEDGLNISQRNITISTCGIVPK 103 Query: 228 IARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286 I + + + + LAISLH+ ++++R L+PI KY ++ L+DAC +Y +N R+TFEY Sbjct: 104 IKELAQKHLQITLAISLHSPNDEMRRGLMPIAMKYSIDELLDACHYYFKETNR-RMTFEY 162 Query: 287 VMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGY 346 ++ G+ND P A L LKG P +NLIP NP ++ S K ++ F + ++++ Sbjct: 163 SLVAGVNDQPVHAEELAGRLKGFPCHVNLIPVNPIKERDFKQSMPKSVMEFKKILEKNRV 222 Query: 347 SSPIRTPRGLDILAACGQLKSLSKRIP 373 + IR G DI AACGQL+ + Sbjct: 223 NVTIRREMGADINAACGQLRRKKLQSR 249 >gi|256370982|ref|YP_003108806.1| radical SAM enzyme, Cfr family [Acidimicrobium ferrooxidans DSM 10331] gi|256007566|gb|ACU53133.1| radical SAM enzyme, Cfr family [Acidimicrobium ferrooxidans DSM 10331] Length = 353 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 115/358 (32%), Positives = 184/358 (51%), Gaps = 30/358 (8%) Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75 EL+ A ++ +P R Q++ +Y G R + +S + +R L H E Sbjct: 6 ELDRAAVRALVPWPDW--RIEQLFHGLYHEGQR-LEAISTLPARMRAELASHLDPGLTER 62 Query: 76 VDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134 E + DG T K+ L + +ETV + R ++CVSSQ GC++ C FC TG Sbjct: 63 RREH-ADDGETVKFALEAADGAL-----VETVVMQSARRISVCVSSQAGCAMGCRFCATG 116 Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194 VR+L EI+ Q+ +A+ + R+++++V MGMGEPL N Sbjct: 117 QAGFVRHLGVGEIVEQLAIAQRSVR----------------PRRLTHVVFMGMGEPLANA 160 Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNI 253 +++ S RR+T+ST G VP I R+ ++GV LA+SLHA ++ R+ Sbjct: 161 SVAIEAIRRIRAD--FGISPRRVTVSTVGIVPGIRRLAHADLGVTLAVSLHAANDAARSD 218 Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313 LVP+NR+Y ++ ++DA + + L+ R+T E+ ++ G+ND RDA L + + A + Sbjct: 219 LVPMNRRYGIDAVLDAAQEFSELTGR-RVTLEWALIAGVNDRDRDATELAGHARRLAAHV 277 Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 NLIP NP PG + +D + F+ ++ G + +R RG I AACGQL + R Sbjct: 278 NLIPLNPTPGYPMVGTDPDGVARFARRLRSLGVNVTVRDTRGRSIDAACGQLAADVAR 335 >gi|222619965|gb|EEE56097.1| hypothetical protein OsJ_04941 [Oryza sativa Japonica Group] Length = 363 Score = 322 bits (827), Expect = 4e-86, Method: Composition-based stats. Identities = 108/374 (28%), Positives = 161/374 (43%), Gaps = 70/374 (18%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-NQH 67 L+G+ +L + + +G R Q+ +Y + Q S + + R L Sbjct: 36 LLGLSEPDLRQLAVDLG----QQSYRGKQLHDLLYKSRAKQIQEFSHVPKVFREALVGAG 91 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-----RGTLCVSSQV 122 + + + + DGT K LL+ + IETV IP R T CVSSQV Sbjct: 92 WKVGRSPVHHAVTASDGTTKILLKLEDNRL-----IETVGIPVDDDKGPSRLTACVSSQV 146 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L CSFC TG RNL A EI+ QVL + +++N+ Sbjct: 147 GCPLRCSFCATGKGGFARNLHAHEIVEQVLAIEE-----------------TFQHRVTNV 189 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAI 241 V MGMGEP+ N +V ++ + L +R IT+ST G I ++ ++ LA+ Sbjct: 190 VFMGMGEPMLNLKSVLEAHRCLNKE--LKIGQRMITISTVGVPSTIKKLASHKLQSTLAV 247 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA + LR +VP GIND+ A Sbjct: 248 SLHAPNQKLRETIVP---------------------------------TGINDAKEHAEE 274 Query: 302 LIKILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L ++L G +NLIP+NP G EY +K + F + ++ + +R RGLD Sbjct: 275 LAELLHTCGGGYHVNLIPYNPIQGSEYKRPYRKVVQAFVDALEARKITVSVRQTRGLDAN 334 Query: 360 AACGQLKSLSKRIP 373 AACGQL++ ++ P Sbjct: 335 AACGQLRNEFQKNP 348 >gi|189218104|ref|YP_001938746.1| Radical SAM family enzyme [Methylacidiphilum infernorum V4] gi|189184962|gb|ACD82147.1| Radical SAM family enzyme [Methylacidiphilum infernorum V4] Length = 314 Score = 322 bits (827), Expect = 4e-86, Method: Composition-based stats. Identities = 121/300 (40%), Positives = 172/300 (57%), Gaps = 30/300 (10%) Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS------RGTLCVSSQVGCSLT 127 E++ EK S DGT+K+L + IETV IP R TLCVS+QVGC+L Sbjct: 2 ELIHEKQSIDGTKKFLWQLCD-----GHAIETVLIPATDSRGSSERLTLCVSTQVGCALG 56 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC +G RNL+ EI+ QVLL+ S++ ++S+IV MGM Sbjct: 57 CHFCASGLLGFKRNLSCGEIVEQVLLSESIVKQ-----------------RVSHIVFMGM 99 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAV 246 GEPL N+D + KS+ + S S G+ S R+IT+STSG P I ++ E + LA+SLHA Sbjct: 100 GEPLLNYDQLIKSIRLISSSWGIGISPRKITISTSGIAPRIRKLALETLPFRLAVSLHAT 159 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 +++LR+ ++PIN KYPL LI +C + ++IT EY+++ G+ND DA L +I Sbjct: 160 TDELRSKIMPINSKYPLSELIKSCEEFCSRR-KQKITLEYILISGLNDRREDAERLARIA 218 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 + AK+NLIP+NP + DQK+ ++F +K IR RG DI ACGQL+ Sbjct: 219 TSLRAKVNLIPYNPIERLAWKSPDQKEQLSFFRWLKNKAVQVSIRKERGRDIDGACGQLR 278 >gi|171912540|ref|ZP_02928010.1| hypothetical protein VspiD_15210 [Verrucomicrobium spinosum DSM 4136] Length = 368 Score = 322 bits (827), Expect = 4e-86, Method: Composition-based stats. Identities = 109/374 (29%), Positives = 175/374 (46%), Gaps = 31/374 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 L+ + EEL +++ G H + + +Y Q + + ++ Sbjct: 16 RPLLDLSTEELSAWMVEHGYKPAHTLP----VLRDVYGTRGAALQPKDRLPANLVQHIHS 71 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP--EKSRGTLCVSSQVGC 124 F + ++S DGT K LLR P +E+V +P R C+SSQVGC Sbjct: 72 TFPATVATLAQRQVSEDGTCKLLLRLPD-----GRTVESVLMPDYHPERAAGCISSQVGC 126 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 ++ C FC T RNLT+ EI+ Q + R GR + +V Sbjct: 127 AMGCDFCATTQTGFERNLTSGEIVEQFIHLRREAR--------------GAGRALRTVVF 172 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243 MGMGEP+ N +V ++ +D + R++T+ST G VP I + E +GV LA+SL Sbjct: 173 MGMGEPMLNLRHVLPAVERMADPRLGALGWRQVTISTVGIVPGIEELTEANLGVHLAVSL 232 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA ++ R ++P+ R++P++ +++A Y S T +Y +L+G+NDS A +L Sbjct: 233 HAPDDETRTAILPMGRRFPVQDILEAADRYQEKSGRI-TTIQYCLLEGVNDSLNQARDLA 291 Query: 304 KILKGIPAKINLIPFNPW----PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++K INL+ +NP G Y S + +F ++ G + +R RG DI Sbjct: 292 NLMKDRRMHINLLRYNPTGLSLKGRTYAPSSMEQTESFLATLRECGAVAHLRRARGPDID 351 Query: 360 AACGQLKSLSKRIP 373 AACGQL+ R Sbjct: 352 AACGQLRKREGRER 365 >gi|317498697|ref|ZP_07956989.1| cfr family radical SAM enzyme [Lachnospiraceae bacterium 5_1_63FAA] gi|316894039|gb|EFV16229.1| cfr family radical SAM enzyme [Lachnospiraceae bacterium 5_1_63FAA] Length = 272 Score = 322 bits (826), Expect = 5e-86, Method: Composition-based stats. Identities = 97/263 (36%), Positives = 149/263 (56%), Gaps = 19/263 (7%) Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167 + K ++C+SSQ GC + C FC + L RNLT E+L Q+ + Sbjct: 1 MKYKHGNSVCISSQAGCRMGCKFCASTLGGLDRNLTPSEMLSQIYYIQR----------- 49 Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227 ++SN+VMMG GEP+ N+DNV + L + + GL+ S+R IT+ST G VP Sbjct: 50 ------DTEERVSNVVMMGTGEPMDNYDNVLRFLELITSEDGLNISQRNITISTCGIVPK 103 Query: 228 IARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286 I + + + + LAISLH+ ++++R L+PI KY ++ L+DAC +Y +N R+TFEY Sbjct: 104 IKELAQKHLQITLAISLHSPNDEMRRGLMPIAMKYSIDELLDACHYYFKETNR-RMTFEY 162 Query: 287 VMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGY 346 ++ G+ND P A L LKG P +NLIP NP ++ S K ++ F + ++++ Sbjct: 163 SLVAGVNDQPVHAEELAGRLKGFPCHVNLIPVNPIKERDFKQSMPKSVMEFKKILEKNRV 222 Query: 347 SSPIRTPRGLDILAACGQLKSLS 369 + IR G DI AACGQL+ + Sbjct: 223 NVTIRREMGADINAACGQLRRKN 245 >gi|196234588|ref|ZP_03133408.1| radical SAM enzyme, Cfr family [Chthoniobacter flavus Ellin428] gi|196221334|gb|EDY15884.1| radical SAM enzyme, Cfr family [Chthoniobacter flavus Ellin428] Length = 364 Score = 322 bits (826), Expect = 5e-86, Method: Composition-based stats. Identities = 118/371 (31%), Positives = 172/371 (46%), Gaps = 31/371 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 SL + EEL + G H + +W+ G + M + +R L Sbjct: 15 SLSDLSAEELALWMEGEGFKGGHAW---RVLREWLGANGGGERDSM-RLPAGLRERLRAT 70 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP--EKSRGTLCVSSQVGCS 125 F + ++S DGT K LLR G +E+V +P R C+SSQVGC+ Sbjct: 71 FPQEAAVLARRQVSEDGTAKLLLRM-----GDGRTVESVLMPDYHPERAAGCISSQVGCA 125 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC T RNLT+ EI+ Q L R + GR + IV M Sbjct: 126 MGCDFCATTQTGFERNLTSGEIVEQFLQLRRE--------------AVAAGRVLRTIVFM 171 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLH 244 GMGEP+ N NV ++ D +F R+IT+ST G VP I + ++GV LAISLH Sbjct: 172 GMGEPMLNLRNVLAAVRRIGDPKLGAFGWRQITISTVGIVPGIDELRAADLGVQLAISLH 231 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A + R L+P+ R++ +E ++ A Y S T +Y +L G+NDS A +L + Sbjct: 232 APDDATRADLLPMGRRFAVEDVLAAADRYQASSGRV-TTIQYCLLDGVNDSLAQARDLSR 290 Query: 305 ILKGIPAKINLIPFNPW----PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 +L G +NL+ +NP G Y S + F ++ G + +R RG DI A Sbjct: 291 LLAGRTMHVNLLRYNPTGLSLRGRTYAPSSVEQTEAFLAELRAHGTVAHLRRARGPDIDA 350 Query: 361 ACGQLKSLSKR 371 ACGQL+ + Sbjct: 351 ACGQLRKREAQ 361 >gi|328948233|ref|YP_004365570.1| ribosomal RNA large subunit methyltransferase N [Treponema succinifaciens DSM 2489] gi|328448557|gb|AEB14273.1| Ribosomal RNA large subunit methyltransferase N [Treponema succinifaciens DSM 2489] Length = 342 Score = 322 bits (826), Expect = 5e-86, Method: Composition-based stats. Identities = 123/363 (33%), Positives = 179/363 (49%), Gaps = 33/363 (9%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK SL G+ EE+ +A+ Q R QI++WI +G F+ M++I + R L Sbjct: 3 KKVSLSGLFPEEIAKAI------QLSPLFRAKQIYEWI-SKGAESFEQMTNIDKTTRKFL 55 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQVG 123 ++ + ++ + DGT K + + IETV + +K R T CVS Q G Sbjct: 56 EENVLLRSSKVTEVLKDPDGTIKLQISLSD-----GLAIETVLLTDKEGRKTACVSCQAG 110 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC TG L RNLTA EI+ + G + NIV Sbjct: 111 CAMGCAFCQTGRLGLGRNLTAGEIVEEFFFMEKEAG------------------TLDNIV 152 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAIS 242 MGMGEPL N D ++K+++I +D G S RRITLST G + I + E V LAIS Sbjct: 153 FMGMGEPLQNLDAIRKAVAILTDKKGRGLSPRRITLSTCGLISGIYELAENGPFVRLAIS 212 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 L LR L+P+++ PL L A + Y + RIT E +L G N A + Sbjct: 213 LTTADPALREQLMPVSKGNPLPELKTAIKFYSEKTGK-RITLEAALLSGQNTGLESAKRM 271 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 + G+ A INLIP+NP G ++ +K+ F + ++ + +RT RG+ I AC Sbjct: 272 AEFAAGLDAYINLIPWNPVQGLQFKTPSRKECEEFVKILQNANLKVNLRTRRGVKIGGAC 331 Query: 363 GQL 365 GQL Sbjct: 332 GQL 334 >gi|322806773|emb|CBZ04342.1| ribosomal RNA large subunit methyltransferase N [Clostridium botulinum H04402 065] Length = 272 Score = 322 bits (825), Expect = 6e-86, Method: Composition-based stats. Identities = 113/288 (39%), Positives = 164/288 (56%), Gaps = 25/288 (8%) Query: 81 SCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV 139 S D T K+L + I IE+V + K ++CVS+QVGC + C FC + ++ Sbjct: 2 SQDKNTYKFLFEYKDGNI-----IESVVMKYKHGNSICVSTQVGCRMGCKFCASTLDGVI 56 Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199 RNLT+ EIL Q++ A+ +G+ +ISN+V+MG GEPL NF+NV K Sbjct: 57 RNLTSGEILSQIMAAQKEIGE-----------------RISNVVLMGSGEPLDNFENVTK 99 Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPIN 258 L + + L+ +R ITLST G VP I + ++ + LAISLH+ + LR ++PI Sbjct: 100 FLDLVTSDTTLNIGQRHITLSTCGIVPKIKELADKNYNITLAISLHSPEDLLRKEMMPIA 159 Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318 KY ++ L++AC +Y +N RITFEY ++KG NDS ++A L +LKG +NLIP Sbjct: 160 NKYSIKELMEACDYYINKTNR-RITFEYALVKGKNDSIKEAKKLSIVLKGKLCHVNLIPV 218 Query: 319 NPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 N Y S K+I +F +K +G + IR G DI AACGQL+ Sbjct: 219 NEIKENSYEKSTLKNIESFGNILKENGIETTIRREMGADINAACGQLR 266 >gi|159463592|ref|XP_001690026.1| predicted protein [Chlamydomonas reinhardtii] gi|158284014|gb|EDP09764.1| predicted protein [Chlamydomonas reinhardtii] Length = 374 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 118/381 (30%), Positives = 187/381 (49%), Gaps = 49/381 (12%) Query: 18 EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD 77 A+L + M ++W W+ + + D+ + LL+++F ++V Sbjct: 15 TNAVLAAFEEENIKPMHALRMWGWLIRNPSATWHDVPDMPKAAVALLDKYFVKFTTKVVK 74 Query: 78 EKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEK------------------SRGTLCV 118 + S DG T K L+ +++E V + R TLCV Sbjct: 75 CQNSSDGSTTKLLVELQD-----GMQVEAVVMTYDAPSVTAAGAAAAAAARARKRSTLCV 129 Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 SSQVGC + C+FC TGT L +L A EI+ Q++ AR++ + Sbjct: 130 SSQVGCQMGCTFCATGTMGLKGHLNAGEIVEQLVHARAVA-------------------R 170 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-V 237 I N+V MGMGEPL N++ V+ ++++ +DS +R +T+ST G +P I ++ E++ V Sbjct: 171 IRNVVFMGMGEPLNNYEAVRGAVAMMTDSKYFGLRRRHVTVSTVGVIPRIKQLAEDLPGV 230 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 LA+SLHA + +LR +VP R Y L+ L++A R Y S ++R+ +EYVML G+ND Sbjct: 231 SLALSLHAPTQELRLQIVPSARAYKLDKLMEAVRSYQANS-SQRVFYEYVMLSGVNDGEE 289 Query: 298 DALNLIKILKGIPAKINLIPFNPW---PGCEYLCSDQKDIVTFSECIK-RSGYSSPIRTP 353 A L ++LKG INLIP+NP G + + TF ++ + G + IR Sbjct: 290 QAHQLGQLLKGDDVVINLIPWNPIYQPEGPFFEAPRDGSVGTFQSILRHQYGLHTTIRQE 349 Query: 354 RGLDILAACGQLKSLSKRIPK 374 G DI A G K+ R + Sbjct: 350 MGQDISGAWGWGKAGWGRAGR 370 >gi|308798845|ref|XP_003074202.1| radical SAM domain-containing protein-like (ISS) [Ostreococcus tauri] gi|116000374|emb|CAL50054.1| radical SAM domain-containing protein-like (ISS) [Ostreococcus tauri] Length = 406 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 100/377 (26%), Positives = 168/377 (44%), Gaps = 66/377 (17%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRG---IRDFQGMSDISQEVRHL 63 SL+G+ + ELE ++ G+P + R Q+ +Y R + +S+ +R Sbjct: 87 VSLLGLTKRELEALAVERGMP----KFRGKQMADHLYAANGTSARSVDEFTTLSKALRAE 142 Query: 64 L-NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 L + + + DGT K LLR + +ET Sbjct: 143 LVAAGVRVGRSSVHHVAAATDGTAKLLLRLDDDRV-----VET----------------- 180 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 RNL EI+ QVL G +++N+ Sbjct: 181 -------------GGFARNLAPHEIVDQVLALEEHFGQ-----------------RVTNV 210 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAI 241 V MGMGEPL N NV K+ + + + R IT+ST G +I ++ ++ +LA+ Sbjct: 211 VFMGMGEPLLNVPNVLKAHEVLNKE--IGIGARHITISTVGVRGSIEKLAYAQLQSVLAV 268 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA + +LR ++P + YP+E L+ C Y ++ RR+TFEY +L G+ND P A Sbjct: 269 SLHAPNQELRETIIPSAKVYPMEDLLQDCEQYF-IATGRRVTFEYTLLGGVNDQPEHAKE 327 Query: 302 LIKIL--KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L ++L + + + +NLIP+NP ++ + + F + +++ + IR RGL+ Sbjct: 328 LGRLLYARNLASHVNLIPYNPVDDADFKRPSRATVYAFRDVLEQERVPASIRQTRGLEAA 387 Query: 360 AACGQLKSLSKRIPKVP 376 AACGQL++ ++ Sbjct: 388 AACGQLRNAYQKNAMTA 404 >gi|325192828|emb|CCA27229.1| hypothetical protein SELMODRAFT_122498 [Albugo laibachii Nc14] Length = 424 Score = 321 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 109/365 (29%), Positives = 176/365 (48%), Gaps = 29/365 (7%) Query: 18 EEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVD 77 + L + + IW+ F + ++ ++ L ++F++ + + Sbjct: 16 QRLLPSFLEQNKFKNIHAQAIWREFSHNINHSFHEIPNLPLRLQQSLRENFTVCTLSLSE 75 Query: 78 EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQK 137 ++IS DGT K L + +E+V + K R LCVSSQVGC + C+FC TGT Sbjct: 76 KQISKDGTIKLLFKTQD-----GHGVESVIMKHKGRNMLCVSSQVGCQMGCTFCATGTMG 130 Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV 197 ++ +L + EIL Q+ A + +I N+V MGMGEPL N+D V Sbjct: 131 IIADLCSGEILEQLAFANTFA-------------------RIRNVVFMGMGEPLQNYDEV 171 Query: 198 KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDLRNILVP 256 ++ + GL+ + +TLST G + I ++ ++ V LA+SLHA + +LR+ +VP Sbjct: 172 IAAIKAMTSVFGLA--PKHVTLSTVGVIHRIQQLNRDVPLVRLALSLHAPTQELRSQIVP 229 Query: 257 INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLI 316 ++ +PLE L+ A + R + EY MLKGINDS A L K+L+ INLI Sbjct: 230 SSKAFPLEKLMQAIDDHLASREHRVVLIEYCMLKGINDSIETAHLLGKLLQDRSVHINLI 289 Query: 317 PFNPWP-GCEYLCSDQKDIVTFSECIK-RSGYSSPIRTPRGLDILAACGQLKSLSKRIPK 374 P+N ++ +DI F ++ + +R G+DI ACGQL + Sbjct: 290 PYNTTDVDAQFSSPSDQDIRNFQSILRQDYNLKATVRENHGMDIEGACGQLALKTTSQHA 349 Query: 375 VPRQE 379 P + Sbjct: 350 TPSKN 354 >gi|154491020|ref|ZP_02030961.1| hypothetical protein PARMER_00937 [Parabacteroides merdae ATCC 43184] gi|154088768|gb|EDN87812.1| hypothetical protein PARMER_00937 [Parabacteroides merdae ATCC 43184] Length = 286 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 110/310 (35%), Positives = 161/310 (51%), Gaps = 25/310 (8%) Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + ++F + D S DGT K+L G +E+VYIP + R TLCVSSQVG Sbjct: 1 MEKNFEVGAVPPSDLMKSVDGTIKYLY-----PAGPGNFVESVYIPTEDRATLCVSSQVG 55 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC TG Q +NL+A EIL Q+ +++NIV Sbjct: 56 CKMNCLFCMTGKQGFTKNLSANEILNQI-------------------QSLPETEELTNIV 96 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 MGMGEPL N D + K L I + S G ++S +RIT+ST G + R EE LA+SL Sbjct: 97 FMGMGEPLDNVDELFKVLEILTASYGYAWSPKRITVSTIGVAKGLKRFLEESDCHLAVSL 156 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ D R L+P+ + +P +I+ + Y ++ RR++FEY++ K +ND + A L+ Sbjct: 157 HSPYPDERRSLMPVEKAFPACDIIETIKQY-DFTHQRRVSFEYIVFKNLNDDLQHAKALV 215 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +L +P ++NLI F+ P SD + F + + +G IR RG DI AACG Sbjct: 216 CLLDKVPCRVNLIRFHAIPNVSLESSDLARMEAFRDTLNAAGIVCTIRASRGEDIFAACG 275 Query: 364 QLKSLSKRIP 373 L + K+ Sbjct: 276 MLSTAKKQQK 285 >gi|187251578|ref|YP_001876060.1| radical SAM enzyme, Cfr family [Elusimicrobium minutum Pei191] gi|186971738|gb|ACC98723.1| Radical SAM enzyme, Cfr family [Elusimicrobium minutum Pei191] Length = 343 Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 116/368 (31%), Positives = 183/368 (49%), Gaps = 31/368 (8%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 M E++++ + + G P R +Q+ +Y GI D+ + ++++ L +F+I+ Sbjct: 1 MNFEKIKDFIKENGFPA----YRIAQVKDAVYKNGITDWNKAVALPADLKNKLKDNFNIL 56 Query: 72 YPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130 + S D T K LL+ ++IETV + T+CVS+QVGC + CSF Sbjct: 57 SFTAAKMQFSDKDRTAKALLKLED-----GLKIETVLMRMGDVWTVCVSTQVGCPVGCSF 111 Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 C TG + R+LT EEI QVL S + + ++I+N+V MGMGEP Sbjct: 112 CSTGKMRFKRDLTDEEISDQVLFWLSYIKQ------------EKLAQRINNVVFMGMGEP 159 Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSND 249 L N+ N K++ S+ L R I++STSG + + V LA+SLH+ +D Sbjct: 160 LFNYLNTVKAVKEISNPDRLGIGMRHISISTSGVADKFHNLAVDLPQVNLALSLHSADDD 219 Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309 RN +VP+NRK+ LE L A Y ++ + + EY +++G+ND P L K + G+ Sbjct: 220 ERNKIVPLNRKFNLETLQKALTEYIAMTGRQ-VFIEYTVVEGVNDRPEHIRLLGKWISGV 278 Query: 310 P----AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +NLI N G + +K + F++ ++ S IR G DILAACGQL Sbjct: 279 KDNYLLHVNLIACNMGKG---KTTSEKQVKLFAKGLQGLHISVTIRKSLGNDILAACGQL 335 Query: 366 KSLSKRIP 373 + Sbjct: 336 AVKESKEK 343 >gi|145347191|ref|XP_001418058.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144578286|gb|ABO96351.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 369 Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 124/381 (32%), Positives = 185/381 (48%), Gaps = 45/381 (11%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIY-VRGIRDFQGMSDISQEVRHLL- 64 + L+GM L+ ++ R +QI + +Y R R + S I +E+R L Sbjct: 11 KDLLGMSARALKSIVVD---ECGQPLYRATQIREHLYGARRCRRIEDFSLIPREMRDALV 67 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE----------KSRG 114 + + +S GT K LR +G IE V IP+ ++R Sbjct: 68 AGGYRTGRLAVESASVSGCGTGKVSLR-----VGEREVIEAVGIPDASCWRASAEAENRL 122 Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 T CVSSQVGC++ C+FC TG Q RNLT EI QV+ L G Sbjct: 123 TACVSSQVGCAMKCTFCATGMQGYKRNLTPAEITAQVIELEELYG--------------- 167 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234 +++S +V MGMGEP+ N +V +++ ++ +G R IT+ST G ++ ++ +E Sbjct: 168 --KRVSQVVFMGMGEPMLNIKSVVQAIRCLNEDVG--IGGRHITVSTVGIPNSLKKLAKE 223 Query: 235 -IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 + + LAISLHA R +VP + YP+E L++ R Y + R+TFEY +L G+N Sbjct: 224 KLAITLAISLHAPDQHTRAKIVPSAKYYPMEDLLNDARAYFKETGR-RVTFEYTLLAGVN 282 Query: 294 DSPRDALNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI 350 DSP A L ++LK G A +N+IP+N G + I F ++ G + I Sbjct: 283 DSPSQAKALSRMLKRKFGTGAHVNIIPWNNIDGINHTRPSGNAIHRFCAQLE-GGVTHTI 341 Query: 351 RTPRGLDILAACGQLKSLSKR 371 R RGLD AACG L +R Sbjct: 342 RRTRGLDTNAACGMLTGAFER 362 >gi|313634805|gb|EFS01235.1| radical SAM enzyme, Cfr family [Listeria seeligeri FSL N1-067] Length = 281 Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats. Identities = 110/285 (38%), Positives = 172/285 (60%), Gaps = 19/285 (6%) Query: 99 GPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLL 158 IETV + ++ ++CV++QVGC++ C+FC +G K R+LTA EI+ Q++ + Sbjct: 1 DGNLIETVMMKQEYGLSVCVTTQVGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHY- 59 Query: 159 GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRIT 218 + ++ ++S++V+MG+GEP N+DNV L + + GL+ R IT Sbjct: 60 -----------LDGRNLEERVSHVVVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHIT 108 Query: 219 LSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277 +STSG P I E+ V LAISLHA +N+LR ++ IN+ Y +E L++A +Y + Sbjct: 109 VSTSGLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVEKT 168 Query: 278 NARRITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPWPGC-EYLCSDQKDI 334 N RITFEY+MLKG+ND ++AL L +L A +NLIP+NP +Y S ++D+ Sbjct: 169 NR-RITFEYIMLKGVNDHKKEALELAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDV 227 Query: 335 VTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQE 379 + F + +K++G + IR G DI AACGQL+ SK+I +V +E Sbjct: 228 LAFYDTLKKNGINCVIRREHGTDIDAACGQLR--SKQIKRVGIRE 270 >gi|313639429|gb|EFS04292.1| radical SAM enzyme, Cfr family [Listeria seeligeri FSL S4-171] Length = 281 Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats. Identities = 109/291 (37%), Positives = 171/291 (58%), Gaps = 18/291 (6%) Query: 99 GPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLL 158 IETV + ++ ++CV++QVGC++ C+FC +G K R+LTA EI+ Q++ + Sbjct: 1 DGNLIETVMMKQEYGLSVCVTTQVGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHY- 59 Query: 159 GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRIT 218 + ++ ++S++V+MG+GEP N+DNV L + + GL+ R IT Sbjct: 60 -----------LDGRNLEERVSHVVVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHIT 108 Query: 219 LSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277 +STSG P I E+ V LAISLHA +N+LR ++ IN+ Y +E L++A +Y + Sbjct: 109 VSTSGLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVEKT 168 Query: 278 NARRITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPWPGC-EYLCSDQKDI 334 N RITFEY+MLKG+ND ++AL L +L A +NLIP+NP +Y S ++D+ Sbjct: 169 NR-RITFEYIMLKGVNDHKKEALELAGLLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDV 227 Query: 335 VTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS-KRIPKVPRQEMQITG 384 + F + +K++G + IR G DI AACGQL+S KR+ R + + Sbjct: 228 LAFYDTLKKNGINCVIRREHGTDIDAACGQLRSKQIKRVGVRERMKQKQAA 278 >gi|15230899|ref|NP_188597.1| radical SAM domain-containing protein [Arabidopsis thaliana] gi|28393068|gb|AAO41968.1| unknown protein [Arabidopsis thaliana] gi|28827394|gb|AAO50541.1| unknown protein [Arabidopsis thaliana] gi|332642748|gb|AEE76269.1| radical SAM domain-containing protein [Arabidopsis thaliana] Length = 372 Score = 319 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 116/391 (29%), Positives = 181/391 (46%), Gaps = 50/391 (12%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +K +S+ E++ GI + QIWK++ + + + L Sbjct: 1 MKLKSVFDAS--EIKSEFESAGINP---KF-AIQIWKYVIQNPDCVWDEIPSLPSAAYSL 54 Query: 64 LNQHFSIIYPEIVDEKISCDGTR-KWLLRFPARCIGGPVEIETVYIPEKSRG-------- 114 L+ F + + S DGT K L++ +E V + +R Sbjct: 55 LHSKFKTLTSSLHSLFHSSDGTTSKLLIKLQ-----NGAFVEAVVMRYDTRLGMLGGKPR 109 Query: 115 ------TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168 TLC+SSQVGC + C+FC TGT NLT+ EI+ Q++ A + Sbjct: 110 PGGIRSTLCISSQVGCKMGCTFCATGTMGFKSNLTSGEIVEQLVHASRIAD--------- 160 Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228 I NIV MGMGEPL N++ V +++ + + S +RIT+ST G V I Sbjct: 161 ----------IRNIVFMGMGEPLNNYNAVVEAVRVML-NQPFQLSPKRITISTVGIVHAI 209 Query: 229 ARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 ++ ++ V LA+SLHA ++R ++P R +PL+ L+DA + + S ++I EY+ Sbjct: 210 NKLHNDLPGVSLAVSLHAPVQEIRCQIMPAARAFPLQKLMDALQTFQKNS-QQKIFIEYI 268 Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKR-SG 345 ML G+ND + A L ++LK INLIPFNP ++ S + + F + ++ Sbjct: 269 MLDGVNDQEQHAHLLGELLKTFQVVINLIPFNPIGSTSQFETSSIQGVSRFQKILRETYK 328 Query: 346 YSSPIRTPRGLDILAACGQLKSLSKRIPKVP 376 + IR G DI ACGQL I K P Sbjct: 329 IRTTIRKEMGQDISGACGQLVVNQPDIKKTP 359 >gi|330837064|ref|YP_004411705.1| radical SAM enzyme, Cfr family [Spirochaeta coccoides DSM 17374] gi|329748967|gb|AEC02323.1| radical SAM enzyme, Cfr family [Spirochaeta coccoides DSM 17374] Length = 359 Score = 319 bits (817), Expect = 5e-85, Method: Composition-based stats. Identities = 127/380 (33%), Positives = 183/380 (48%), Gaps = 36/380 (9%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 SL G+ ++++ L R QI W+ RG F GMS++S R L + Sbjct: 12 PSLYGLSVQDIQTVL------SLDKPFRARQIRSWL-ARGTTSFTGMSNLSLLERTRLTE 64 Query: 67 HFS-IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYI-PEKSRGTLCVSSQVGC 124 + I+ E+++EK G K +R + +E V + + R T C+S QVGC Sbjct: 65 KYPHILTSEVIEEKTDRTGATKLGIRLYDGLV-----VECVLLVDQDGRKTACLSCQVGC 119 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 ++ C FC TGT L RNL A EI+ Q + S+IV Sbjct: 120 AMGCVFCRTGTMGLARNLHAYEIVEQFVHLMKYGTP-------------------SHIVY 160 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MGMGEPL N V S+ + RRIT+ST G VP I ++ E +GV LAISL Sbjct: 161 MGMGEPLANTKEVFSSVLTLNSPDWFDIGIRRITISTCGIVPGILQLAESGLGVKLAISL 220 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 A + LR L+P+NR +PL L + Y RITFEY ML G+N A NL Sbjct: 221 VAADDQLRTRLMPVNRSFPLIRLKETLVTYQKKEKK-RITFEYCMLGGVNTDETAARNLA 279 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +KG+ A +NLIP+NP P + +++ +F ++R G R RG + ACG Sbjct: 280 HFMKGLEAIVNLIPWNPAPDLPWQTPSNREMDSFVSTLQRLGVPCTRRFSRGRGVDGACG 339 Query: 364 QLKSLSKRIPKVPRQEMQIT 383 QL ++ + + +P ++ Q T Sbjct: 340 QL-AVPQNMRTLPPEDTQGT 358 >gi|282890718|ref|ZP_06299238.1| hypothetical protein pah_c026o038 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499311|gb|EFB41610.1| hypothetical protein pah_c026o038 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 364 Score = 318 bits (816), Expect = 8e-85, Method: Composition-based stats. Identities = 134/375 (35%), Positives = 200/375 (53%), Gaps = 32/375 (8%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDF-QGMSDISQEVR 61 +K S++ E + I R+ S I++ + G + + +QE+R Sbjct: 1 MTEKISILAHTEE---SFIHAIAERLGKGRVHASLIYQEFFRSGSLNAAHPAFNNAQEIR 57 Query: 62 HLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 + ++ S+ + D K DG T K+L +E+E V IP +S GTLC+SS Sbjct: 58 TAILENVSVSQLSLGDRK--EDGKTGKFL-----GKTADGLEVEFVQIPMQSGGTLCISS 110 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC + C+FC TG L+RNLT EEI+ QV LA+ Sbjct: 111 QVGCQMGCAFCETGKMGLLRNLTTEEIVSQVYLAKHHNQF-----------------SFR 153 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG--VM 238 N+V MGMGEPL NFD V +++ I +D G F +RR+T+STSG V I ++ G Sbjct: 154 NLVFMGMGEPLDNFDAVMQAVRIFNDPKGFGFGRRRMTISTSGCVDGIDKLANLGGQAPN 213 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+S++A +++LRN L+P+NRKY L+ L +A + Y + + I YV+L+G ND Sbjct: 214 LAVSINAPTDELRNRLMPVNRKYDLQTLYEAMQGYCTKTGRQ-ILIAYVLLQGQNDQIEH 272 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 AL L + LKG+ KINLIP+NP + D I F++ +++ GY + +R +G DI Sbjct: 273 ALQLSEYLKGLNVKINLIPYNPQSRDRFQAPDLNTIEAFTQSLRQKGYYTLLRLTKGQDI 332 Query: 359 LAACGQLKSLSKRIP 373 +AACGQL +L R Sbjct: 333 MAACGQLGNLKLRKQ 347 >gi|159487459|ref|XP_001701740.1| predicted Fe-S-cluster redox enzyme [Chlamydomonas reinhardtii] gi|158280959|gb|EDP06715.1| predicted Fe-S-cluster redox enzyme [Chlamydomonas reinhardtii] Length = 502 Score = 318 bits (815), Expect = 9e-85, Method: Composition-based stats. Identities = 122/395 (30%), Positives = 174/395 (44%), Gaps = 61/395 (15%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYV-----RGIRDFQGM----SDISQE 59 L + ELE G R QIW+W+Y +R + + + + Sbjct: 95 LKALTLPELEAWCAAQGEAAPAN--RALQIWRWMYADPPAGSWVRSLEETMGRQNGFAAK 152 Query: 60 VRHLLNQHFSI-IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118 + H S+ ++ + DGTRK + G IETV IP Sbjct: 153 FVEKVGPHVSLEGGLKLSQVVRASDGTRKLVFTLLGGEAAGG-SIETVLIP--------- 202 Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 VGC++ C FCYTG L+ NL+ +I+ QV+ AR L Sbjct: 203 --VVGCAMNCQFCYTGRMGLLGNLSTAQIVEQVVEARRFLAQEGDRT------------P 248 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238 ++N+V MGMGEPL N + V + I S +GL S +IT+ST G VP + V V Sbjct: 249 LTNLVFMGMGEPLHNTEAVLAAADIVSHYLGLHISHNKITISTVGLVPEMRAVLARTRVQ 308 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN-------------------- 278 +A+SLHA ++++R+ +VP+NR+Y L L A Sbjct: 309 VALSLHATTDEVRDWIVPVNRRYDLATLTAALEEMFPKEEEAAIGSLSSSDEAAAAAAGK 368 Query: 279 -----ARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKD 333 R + EY ML GIND+ DA L +L+ + K+NLI FNP G + S +D Sbjct: 369 GSSKEGRSLLVEYTMLHGINDTLDDAHRLADMLRRVNCKVNLIVFNPHKGTRFQPSTDED 428 Query: 334 IVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 I F + RSG IR RG D +AACGQL ++ Sbjct: 429 ISAFRSALIRSGMVCTIRDSRGDDEMAACGQLGNV 463 >gi|313888523|ref|ZP_07822190.1| 23S rRNA m2A2503 methyltransferase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845552|gb|EFR32946.1| 23S rRNA m2A2503 methyltransferase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 333 Score = 318 bits (815), Expect = 9e-85, Method: Composition-based stats. Identities = 110/344 (31%), Positives = 169/344 (49%), Gaps = 27/344 (7%) Query: 29 RHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISC-DGTRK 87 + R +Q++ + + + D + S++S + L+ I EI S D TRK Sbjct: 13 KEKAFRGTQLFTFFHDKKRYDVEN-SNLSAKAISLIKDE-EINKIEIFKSFDSDLDETRK 70 Query: 88 WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147 L R + IE V + K + CVS+QVGC + C FC + L+RNL+A E+ Sbjct: 71 MLFRLKDGNL-----IEGVLMEYKHGYSQCVSTQVGCRMGCDFCASTKSGLLRNLSAGEM 125 Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207 L QV + KISN ++MG GEPL NFD V + + + D Sbjct: 126 LGQVYEIEN-----------------KYNIKISNFILMGSGEPLDNFDEVIRFIKLLHDE 168 Query: 208 MGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEML 266 G + S R IT+ST G I + + + + LA+SLH ++ R++L+PINR++ L L Sbjct: 169 KGHNTSYRNITISTCGVADKIYDLADLNLPINLAVSLHQTNDKDRSVLMPINRRFNLVEL 228 Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 + +Y +N RITFEY M+K ND ++ L K + INLIP NP + Sbjct: 229 KKSLEYYVKKTN-NRITFEYTMIKNQNDGIKNIDELYNFAKNLKCHINLIPLNPIEEFDE 287 Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 + +I F +++ G++ IR G DI A+CGQL+ + Sbjct: 288 KRPSKAEINDFKNKLEKKGFNVTIRRELGSDISASCGQLRRKIE 331 >gi|281202992|gb|EFA77193.1| putative ribosomal RNA large subunit methyltransferase N [Polysphondylium pallidum PN500] Length = 361 Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats. Identities = 148/372 (39%), Positives = 202/372 (54%), Gaps = 64/372 (17%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K ++LIG+ +E+L + L ++G R QIW WIY +G ++ S++S + LL Sbjct: 43 KTKNLIGISKEDLTKQLTELG---DFQSYRIDQIWSWIYNKGQKNIDNFSNLSNVQKSLL 99 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 +++ I Y + +++S DGTRK L+ F ++ETV+IPE RGTLCVSSQVGC Sbjct: 100 KEYYHIDYGTLDSDQLSKDGTRKILVGFS------GDQVETVFIPEARRGTLCVSSQVGC 153 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC+TGTQ+LVRNL EIL Q ++ARSL+ DF + R ISN+V Sbjct: 154 TFGCKFCFTGTQRLVRNLNVSEILGQFMMARSLMNDFGHTTE---------KRLISNVVF 204 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISL 243 MGMGEPL N+ +L I +D GLS SK RIT+STSG VP I R+G+E + LAISL Sbjct: 205 MGMGEPLMNYRAASAALRIMTDPNGLSLSKSRITVSTSGVVPLIERLGKEFPGIGLAISL 264 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA +N R+ +VPIN+++P+E LI C + L N +IT D P Sbjct: 265 HASNNKTRSEIVPINQQWPIEELIKTCIEFSKL-NTNKITI---------DKPE------ 308 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 I F+ I +G IR RG DILAACG Sbjct: 309 -----------------------------KIKEFASIIANAGLKVTIRQSRGQDILAACG 339 Query: 364 QLKSLSKRIPKV 375 QLK+ S ++ K Sbjct: 340 QLKTESVKVKKT 351 >gi|255994247|ref|ZP_05427382.1| radical SAM enzyme, Cfr family [Eubacterium saphenum ATCC 49989] gi|255993915|gb|EEU04004.1| radical SAM enzyme, Cfr family [Eubacterium saphenum ATCC 49989] Length = 342 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 115/365 (31%), Positives = 183/365 (50%), Gaps = 35/365 (9%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 +SL GM +E+E +L +G R QI + + G+ + IS++ R L+ Sbjct: 2 KSLAGMNLKEIESVVLSLG----EKAYRAKQILEAV-NNGVDSIDKIHTISKDFRAKLSN 56 Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++I + + +S DG+ K+LL+ IE + + K +LC+SSQ GC Sbjct: 57 KYTISSITVEKKLVSKRDGSIKYLLKTSDGKF-----IEAMSMVYKHGVSLCISSQAGCR 111 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G + L RNL+A E++ QVL+ + KIS IV+M Sbjct: 112 MGCTFCSSGKEGLERNLSAFEMIEQVLILKRGFD------------------KISGIVVM 153 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLH 244 G GEP N+D +KK L ++ L KR IT+ST G I + ++ + LA SLH Sbjct: 154 GTGEPFDNYDELKKFLKRITNEEFLRIGKRHITVSTCGIEEGIKKFSKDFRSINLAFSLH 213 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A SND+R ++P N+ ++ +I + ++ RR+TFEY+++KG+NDS + L + Sbjct: 214 AASNDIRKKIMPGNK-LSVDDIIGLASEHAKIT-RRRVTFEYILIKGVNDSMAECELLCR 271 Query: 305 ILKGIPAKINLIPFNPWP---GCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 LKGI +NLI N + D K + + +++ IR G DI A Sbjct: 272 KLKGINCLVNLIRLNGSSYEGDNRFSSPDMKTVKQWQNELEKRHIQVTIRRTIGEDIQGA 331 Query: 362 CGQLK 366 CGQL+ Sbjct: 332 CGQLR 336 >gi|326434869|gb|EGD80439.1| radical SAM domain-containing protein [Salpingoeca sp. ATCC 50818] Length = 517 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 118/394 (29%), Positives = 189/394 (47%), Gaps = 65/394 (16%) Query: 11 GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70 G++ EE K+GI +H ++W+ I RG+ D + + ++ + + L+ + F I Sbjct: 18 GLVLEE----CTKLGINHKH----AYKMWRHIIARGVTDVEEIPELPKALYKLVKEKFVI 69 Query: 71 IYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPE------------------- 110 ++ K S D T K L+R + +ETV + Sbjct: 70 TTSKLESFKTSADESTTKLLIRLQDGAL-----VETVIMRYGRVELRNFPSDRQRRTEDG 124 Query: 111 ------KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC 164 K R T+CVSSQVGC + C+FC TGT L+ NLTA EIL Q+ A ++ Sbjct: 125 ETVFASKERATVCVSSQVGCKMGCTFCATGTMGLLSNLTAGEILEQLYHANTV------- 177 Query: 165 EDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF 224 KI N+V MGMGEPL N+D V ++ +D S S RI +ST G Sbjct: 178 ------------EKIRNVVFMGMGEPLDNYDAVVMAVRGMTDVQRFSLSPSRIAVSTVGV 225 Query: 225 VPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL-----SN 278 VP + ++ E+I V LA+SLHA + +LR +VP + + ++ ++ A ++ S Sbjct: 226 VPKMLKMAEDIPQVGLALSLHAPTQELRAQIVPTAKAWHIDRIMAAMDNFIEHRSQVASR 285 Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP-GCEYLCSDQKDIVTF 337 + EYV++ +N S A L ++L+G +N+IP+NP +Y + + F Sbjct: 286 KSHVLIEYVLIDNVNSSEEVAHQLGRLLEGREVILNVIPYNPTDVPHDYKAPSSETLEKF 345 Query: 338 SECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 + ++ + +R G D+ AACGQL S+R Sbjct: 346 NAVLREYDLRTIVRQELGQDVNAACGQLVISSQR 379 >gi|255080924|ref|XP_002504028.1| predicted protein [Micromonas sp. RCC299] gi|226519295|gb|ACO65286.1| predicted protein [Micromonas sp. RCC299] Length = 485 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 114/380 (30%), Positives = 174/380 (45%), Gaps = 28/380 (7%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQG----------- 52 L + SL R L L G+ + + I +RD + Sbjct: 7 LTRTSLFD--RSALVAFLED-GLGPKRKDAAAKH-CRAILHAAVRDAEAGLDAVNLSESR 62 Query: 53 MSDISQEVRHLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPE- 110 + I + R + + F++I I D + S DG T K ++ +E+V + Sbjct: 63 VPGIPKFARDQIPERFALITTTIADCQTSKDGSTTKMVVELQD-----GHRVESVVMRHD 117 Query: 111 KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 K R TLCVSSQVGC + C+FC TGT + NLT+ EIL Q++ A L D + + Sbjct: 118 KGRVTLCVSSQVGCKMGCTFCATGTLGELGNLTSGEILEQLVHANRLFNDDGTGAGLRRV 177 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230 + G + N+V MGMGEPL N+D V ++ +D + + R+T+ST G VP + R Sbjct: 178 SGTAHG--VRNLVFMGMGEPLNNYDAVVGAIGPMTDPNAFALAPSRVTVSTVGVVPKMRR 235 Query: 231 V-GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 + + GV LA+SLHA + LR +VP Y L ++ A Y R EY +L Sbjct: 236 LVRDAPGVCLALSLHAPNQRLREKIVPTATAYKLPDILSALDEYLATGPKVRTMIEYCVL 295 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIK--RSGY 346 G+ND+ A L ++++ +NLIP+NP + +D+ + Sbjct: 296 GGVNDTTECARELGELMRHRDVIVNLIPYNPTATPMGHSPPKMEDVRAMCAVLTGPEFNQ 355 Query: 347 SSPIRTPRGLDILAACGQLK 366 + +R G DI ACGQL Sbjct: 356 FTTVRHEMGQDISGACGQLA 375 >gi|282895427|ref|ZP_06303564.1| Putative uncharacterized protein [Raphidiopsis brookii D9] gi|281199460|gb|EFA74323.1| Putative uncharacterized protein [Raphidiopsis brookii D9] Length = 300 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 107/309 (34%), Positives = 155/309 (50%), Gaps = 31/309 (10%) Query: 11 GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70 G +EL + + G P R Q+ WIY G+ +S + R + SI Sbjct: 22 GASVDELTTWVQQQGQPG----YRGKQLHNWIYHHGVHRISDISVFPKTWREQVTD-VSI 76 Query: 71 IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130 + + + DGT K+LL I IETV IP R T+CVS+QVGC + C F Sbjct: 77 GRSSVNYQCSATDGTVKYLLNLADGEI-----IETVGIPSDKRLTVCVSTQVGCPMACDF 131 Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 C TG RNL EI+ QVL + +++S++V MGMGEP Sbjct: 132 CATGKGGFKRNLNRGEIVDQVLTVQE-----------------DFQQRVSHVVFMGMGEP 174 Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSND 249 L N +NV +L + L +R +T+ST G I ++ E + V LA+SLHA + Sbjct: 175 LLNTENVILALKCLNQD--LGIGQRSLTVSTVGIRDRIRQLAEHHLQVTLAVSLHAPNQI 232 Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309 LR ++P + YP+E L+ CR Y ++ R+TFEY++L G+ND P AL L + L+G Sbjct: 233 LREQIIPSAKTYPIEQLLAECRQYVEITGR-RVTFEYILLSGVNDLPEQALELSQRLRGF 291 Query: 310 PAKINLIPF 318 + +NLIP Sbjct: 292 QSHVNLIPL 300 >gi|302339631|ref|YP_003804837.1| radical SAM enzyme, Cfr family [Spirochaeta smaragdinae DSM 11293] gi|301636816|gb|ADK82243.1| radical SAM enzyme, Cfr family [Spirochaeta smaragdinae DSM 11293] Length = 356 Score = 316 bits (810), Expect = 4e-84, Method: Composition-based stats. Identities = 113/363 (31%), Positives = 176/363 (48%), Gaps = 33/363 (9%) Query: 11 GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70 G+ +E+ R Q+++ + +GI + +S +S R+ L++ S+ Sbjct: 17 GLFPDEICRVF------HLSPAFRGKQVFRAL-QQGISSWTQISTLSLNDRNRLSEEASL 69 Query: 71 IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYI-PEKSRGTLCVSSQVGCSLTCS 129 + DG+ K LL +E+V + E R T C+SSQVGC++ C+ Sbjct: 70 FSSVPTRFDEASDGSAKLLLEL-----IDGRFVESVLLVDESGRKTACLSSQVGCAMRCA 124 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 FC TGT L+RNL+ EIL Q ++ G+ ISNIV MGMGE Sbjct: 125 FCRTGTMGLLRNLSTGEILEQYYHLKNRYGE------------------ISNIVFMGMGE 166 Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSN 248 PL N V+K+++I + G R+IT+ST G V I + E + LA SL Sbjct: 167 PLANLPPVQKAIAILNHPEGPGIGIRKITVSTCGIVDGIRSLSETALIPRLACSLVTADP 226 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 LR L+P+++ PL L A Y S RIT E V+L GIN + A + +G Sbjct: 227 KLRQRLMPVSKANPLPELKQALHFYQEKSKR-RITLECVLLGGINSAEEQAQGVADFARG 285 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 + +N+IP+NP G ++ ++I+ + + ++++G + R RG +I ACGQL L Sbjct: 286 LSVLVNVIPWNPTEGLDFRPPSDQEIIRYRKRLEQAGIAVSRRYRRGSEINGACGQLAVL 345 Query: 369 SKR 371 R Sbjct: 346 ENR 348 >gi|302807670|ref|XP_002985529.1| hypothetical protein SELMODRAFT_122498 [Selaginella moellendorffii] gi|300146735|gb|EFJ13403.1| hypothetical protein SELMODRAFT_122498 [Selaginella moellendorffii] Length = 374 Score = 316 bits (810), Expect = 4e-84, Method: Composition-based stats. Identities = 122/381 (32%), Positives = 175/381 (45%), Gaps = 50/381 (13%) Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76 L+ L + GI HV IW+ + + + + LL F + + Sbjct: 12 LKAELQRHGIKPLHVYT----IWRHVMDHPNAALHQVPGLPGALYPLLRTRFKALTSTLA 67 Query: 77 DEKISCDG-TRKWLLRFPARCIGGPVEIETVYI--------------PEKSRGTLCVSSQ 121 S +G T K LL+ + +ETV + P R TLCVSSQ Sbjct: 68 AHSTSANGSTTKLLLQLQS-----GQSVETVIMRHHGGAGKYAGGPRPGSDRATLCVSSQ 122 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC + CSFC TGT V NLTA EI+ Q + A + I N Sbjct: 123 VGCKMGCSFCATGTMGFVANLTAGEIVEQYVHASRMS-------------------PIRN 163 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLA 240 IV MGMGEPL N+++V +++ + S RIT+ST G VP I + + GV LA Sbjct: 164 IVFMGMGEPLNNYNSVVQAVQTLT-GRCFGLSPSRITISTVGIVPRILSLAGDLPGVNLA 222 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA + LR +VP +R + L+ L+ A Y SN + EYVML+ +NDS +DA Sbjct: 223 LSLHAPTQALRCQIVPASRAFTLDKLMAAVDAYQASSNRT-LFIEYVMLQDVNDSSQDAR 281 Query: 301 NLIKILKGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRS-GYSSPIRTPRGLDI 358 L +L+ +NLIP+N +Y + + F + ++ G + +R G DI Sbjct: 282 QLGCLLRDRKVVLNLIPYNHTFVVGDYRATPADRVHHFQKIVREEFGIRTTVRQEMGQDI 341 Query: 359 LAACGQLKSLSKRIPKVPRQE 379 ACGQL K++ P E Sbjct: 342 DGACGQLA--LKKLKASPDME 360 >gi|182412196|ref|YP_001817262.1| radical SAM protein [Opitutus terrae PB90-1] gi|205829633|sp|B1ZQZ5|RLMN1_OPITP RecName: Full=Ribosomal RNA large subunit methyltransferase N 1; AltName: Full=23S rRNA m2A2503 methyltransferase 1 gi|177839410|gb|ACB73662.1| radical SAM enzyme, Cfr family [Opitutus terrae PB90-1] Length = 355 Score = 316 bits (809), Expect = 5e-84, Method: Composition-based stats. Identities = 108/370 (29%), Positives = 170/370 (45%), Gaps = 31/370 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + SL + ++L L + G + H ++ + Y R + + L Sbjct: 2 RPSLAELSVDDLASVLAQWGYKRSH----AGRVLREYYARCGELTEAGRPWPAGLLERLR 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE--KSRGTLCVSSQVG 123 F+ + +++ DGT K LLR +E V +P+ R C+SSQVG Sbjct: 58 IEFAPGGTALAARQVAADGTTKLLLRL-----ADGRTVEAVLMPDYRADRAAGCLSSQVG 112 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C FC T RNLTA E++ Q L R S GRK+ +V Sbjct: 113 CAMGCDFCATAQSGFERNLTAGEMVEQFLALRRE--------------AASAGRKLQTVV 158 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAIS 242 MGMGEPL N D V ++ +D+ R++T+ST G VP I + ++G+ LA+S Sbjct: 159 FMGMGEPLLNLDAVLTAVRRIADNTYGGLGWRQVTVSTVGLVPGIDALTAADLGINLAVS 218 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LHA + R L+P R++ + ++ A + S R + +Y +LKG+NDS A L Sbjct: 219 LHAPDDATRAALLPAGRRFAIADILAAVDRFQA-SRGRPVIIQYCLLKGVNDSAAHARML 277 Query: 303 IKILKGIPAKINLIPFNPW----PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 ++ +NL+ +NP G Y S + F ++ G + +R RG DI Sbjct: 278 AAVIGSRRMHVNLLHYNPTGLSLRGVRYEPSGDEAAAQFLAELRARGVVTHLRRSRGPDI 337 Query: 359 LAACGQLKSL 368 AACGQL++ Sbjct: 338 DAACGQLRAK 347 >gi|190150594|ref|YP_001969119.1| hypothetical protein APP7_1325 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189915725|gb|ACE61977.1| hypothetical protein APP7_1325 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 274 Score = 316 bits (809), Expect = 6e-84, Method: Composition-based stats. Identities = 116/270 (42%), Positives = 162/270 (60%), Gaps = 20/270 (7%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K +L+ + R+E+ E ++G R Q+ KWIY G +F MS+I++ +R L Sbjct: 25 EKINLMNLTRQEMRELFAEMG----EKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKL 80 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 Q I PE+ E+ S DGT KW ++ +IETVYIPE R TLCVSSQVGC Sbjct: 81 KQIAEIKAPEVSVEQRSSDGTIKWAMQVGD------QQIETVYIPEDDRATLCVSSQVGC 134 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +L C FC T Q RNLT EI+ QV A ++G+F + R I+N+VM Sbjct: 135 ALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGV----------TGVRPITNVVM 184 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N +NV ++ I D SKRR+TLST+G VP + + E+I V LAISLH Sbjct: 185 MGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKIDVALAISLH 244 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYP 274 A +++LR+ ++PIN+KY ++ML+D+ YP Sbjct: 245 APNDELRDEIMPINKKYNIKMLMDSVHKYP 274 >gi|289612225|emb|CBI60152.1| unnamed protein product [Sordaria macrospora] Length = 278 Score = 315 bits (808), Expect = 7e-84, Method: Composition-based stats. Identities = 138/270 (51%), Positives = 183/270 (67%), Gaps = 14/270 (5%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 + L+G+ + E+ AL G R ++R QIW WIY RG +F M+DI++ L+ Sbjct: 23 RTDLVGLSKPEIRAALEAAGFDARQAKLRAKQIWHWIYNRGATEFSAMTDIAKAQHPTLD 82 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +HF I P + + ++S DGTRKWLL P + E V+IP+ RGTLCVSSQVGC+ Sbjct: 83 KHFVIGRPNVKEAQVSTDGTRKWLLTSPD-----GQDYEMVFIPDADRGTLCVSSQVGCT 137 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C+FC+TGT +LVRNLT EI+ QV+LAR LG++P + GR ++NIVMM Sbjct: 138 LNCTFCHTGTMRLVRNLTPGEIVGQVMLARDALGEWPSQPE---------GRMLTNIVMM 188 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL NFD V+ +LS+ D GL+ SKRRITLSTSG VP +AR GEEIGV LA+SLHA Sbjct: 189 GMGEPLYNFDAVRDALSVVMDGDGLALSKRRITLSTSGVVPMMARAGEEIGVNLAVSLHA 248 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPG 275 V+ ++R+ +VP+NRKY +E L+ AC YPG Sbjct: 249 VTKEVRDEIVPLNRKYGIEELLQACADYPG 278 >gi|302810701|ref|XP_002987041.1| hypothetical protein SELMODRAFT_182858 [Selaginella moellendorffii] gi|300145206|gb|EFJ11884.1| hypothetical protein SELMODRAFT_182858 [Selaginella moellendorffii] Length = 374 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 123/381 (32%), Positives = 175/381 (45%), Gaps = 50/381 (13%) Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76 L+ L + GI HV IW+ + + + + LL F + + Sbjct: 12 LKAELQRHGIKPLHVYT----IWRHVMDHPNAALHQVPGLPGALYPLLRTRFKALTSTLA 67 Query: 77 DEKISCDGTR-KWLLRFPARCIGGPVEIETVYI--------------PEKSRGTLCVSSQ 121 S +GT K LL+ + +ETV + P R TLCVSSQ Sbjct: 68 AHSTSANGTTTKLLLQLQS-----GQSVETVIMRHHGGAGKYAGGPRPGSDRATLCVSSQ 122 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC + CSFC TGT V NLTA EI+ Q + A + I N Sbjct: 123 VGCKMGCSFCATGTMGFVANLTAGEIVEQYVHASRMS-------------------PIRN 163 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLA 240 IV MGMGEPL N+++V +++ + S RIT+ST G VP I G+ GV LA Sbjct: 164 IVFMGMGEPLNNYNSVVQAVQTLT-GRCFGLSPSRITISTVGIVPRILSVAGDLPGVNLA 222 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA + LR +VP +R + L+ L+ A Y SN + EYVML+ +NDS +DA Sbjct: 223 LSLHAPTQALRCQIVPASRAFTLDKLMAAVDAYQASSNRT-LFIEYVMLQDVNDSSQDAR 281 Query: 301 NLIKILKGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKRS-GYSSPIRTPRGLDI 358 L +L+ +NLIP+N +Y + + F + ++ G + +R G DI Sbjct: 282 QLGCLLRDRKVVLNLIPYNHTFVVGDYRATPADRVHHFQKIVREEFGIRTTVRQEMGQDI 341 Query: 359 LAACGQLKSLSKRIPKVPRQE 379 ACGQL K++ P E Sbjct: 342 DGACGQLA--LKKLEASPDME 360 >gi|225428987|ref|XP_002265287.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|147817733|emb|CAN60150.1| hypothetical protein VITISV_044331 [Vitis vinifera] gi|296083052|emb|CBI22456.3| unnamed protein product [Vitis vinifera] Length = 372 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 107/368 (29%), Positives = 165/368 (44%), Gaps = 48/368 (13%) Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75 EL GI + IWK++ D+ ++ + LL HF + Sbjct: 11 ELRRQFHSAGISPNFIPF----IWKYVVQNPNCDWDDITSLPSAAYPLLRSHFKPSTSSL 66 Query: 76 VDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRG--------------TLCVSS 120 S D T K L++ +E V + +R TLC+SS Sbjct: 67 HTVIDSSDNVTTKLLIKLQ-----NGSFVEAVIMRYDTRLGKYGGKPRPGGPRSTLCISS 121 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC + C FC TG+ NL++ EI+ Q++ A +I Sbjct: 122 QVGCKMGCKFCATGSMGFKSNLSSGEIVEQLVHASHFS-------------------QIR 162 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239 N+V MGMGEPL N+ + +++ I S ++IT+ST G + I ++ + + L Sbjct: 163 NVVFMGMGEPLNNYSALVEAIHIM-QGSPFQLSPKKITVSTVGIIHAINKLQSDLPNLNL 221 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA D+R ++P R +PLE L+D R Y S ++I EY+ML +ND + A Sbjct: 222 AVSLHAPVQDIRCQIMPAARAFPLEKLMDTLRTYQTNS-GQKIFIEYIMLDEVNDEEQHA 280 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEY-LCSDQKDIVTFSECIKR-SGYSSPIRTPRGLD 357 L K+L+ +NLIPFNP Y S ++ + F + ++ + +R G D Sbjct: 281 HQLGKLLETFQVVVNLIPFNPIGNLSYFKTSSEQKVARFQKILRGTYNIRTTVRKQMGQD 340 Query: 358 ILAACGQL 365 I ACGQL Sbjct: 341 ISGACGQL 348 >gi|257458205|ref|ZP_05623359.1| radical SAM enzyme, Cfr family [Treponema vincentii ATCC 35580] gi|257444499|gb|EEV19588.1| radical SAM enzyme, Cfr family [Treponema vincentii ATCC 35580] Length = 348 Score = 312 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 114/362 (31%), Positives = 170/362 (46%), Gaps = 33/362 (9%) Query: 11 GMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSI 70 GM+ EE+ R ++ QI++WI RG F M+++ + R L ++ Sbjct: 16 GMLPEEIATVC------NLPQRFQSVQIFQWI-ARGCTSFAEMTNLPLKERERLASVYTP 68 Query: 71 IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQVGCSLTCS 129 DGT K + IETV + +K R T CVS QVGC + C+ Sbjct: 69 RNTVCETVLKDPDGTVKL-----GIGLYDGSSIETVLLFDKHERRTACVSCQVGCPMGCT 123 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 FC TG +RNL+ EI+ Q L + G K+ NIV MGMGE Sbjct: 124 FCQTGQLGCLRNLSPNEIVEQFLHLEKICG------------------KLDNIVFMGMGE 165 Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSN 248 PL N D++ K++++ + G + S RRITLSTSG I + E ++ + LA+SL Sbjct: 166 PLLNLDSIAKTIAVLTHPKGRNLSHRRITLSTSGICKGIYELAERQLDIRLAVSLTTADE 225 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 LR L+P+ + PL L A R++ ++ R+T E +LK +N S + A + +G Sbjct: 226 ALRTTLMPVTKANPLSELKKAIRYFNDKTDK-RVTLELALLKDVNTSYKAAQQVRDFAEG 284 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 + INLIP+NP Y +I +F + + +R RG I ACGQL Sbjct: 285 LNVHINLIPWNPVQQLPYSTPSDSEIRSFYNYLTAENLNVTVRQKRGRTIGGACGQLGKK 344 Query: 369 SK 370 + Sbjct: 345 GR 346 >gi|224060769|ref|XP_002300266.1| predicted protein [Populus trichocarpa] gi|222847524|gb|EEE85071.1| predicted protein [Populus trichocarpa] Length = 373 Score = 312 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 109/380 (28%), Positives = 175/380 (46%), Gaps = 48/380 (12%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 ++ K GI + IWK++ ++ + D+ LL F Sbjct: 10 PDVRAEFEKAGINTHFIPF----IWKYVIKNPNCEWDDIPDLPSAAYSLLRSKFKTSTSS 65 Query: 75 IVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRG--------------TLCVS 119 + S DG T K L++ +E V + +R TLC+S Sbjct: 66 VDSVINSNDGVTTKLLVKLQ-----NGAFVEAVIMRYDTRLGKYCGKPRPGGPRSTLCIS 120 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 SQVGC + C FC TG+ NL++ EI+ Q++ A L +I Sbjct: 121 SQVGCKMGCKFCATGSMGFKNNLSSGEIVEQLVHASCLS-------------------QI 161 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VM 238 N+V MGMGEPL N+ + +++ + S +RIT+ST G + I ++ +++ + Sbjct: 162 RNVVFMGMGEPLNNYSALVEAVRAM-SGVPFQLSPKRITVSTVGIIHAINKLHKDLPGLN 220 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLHA D+R ++P R +PLE L+DA + Y S +I EY+ML G+ND + Sbjct: 221 LAVSLHAPVQDVRCQIMPAARAFPLEKLMDALQVYQKNSMQ-KIFIEYIMLDGVNDEEQH 279 Query: 299 ALNLIKILKGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGL 356 A L K+L+ +NLIPFNP ++ S ++ ++ F + ++ + + +R G Sbjct: 280 AHQLGKLLETFDVVVNLIPFNPIGSLSQFRTSSEEKVLRFQKILRGVNNIRTTVRKQMGQ 339 Query: 357 DILAACGQLKSLSKRIPKVP 376 DI ACGQL K P Sbjct: 340 DISGACGQLVVNLPDEKKPP 359 >gi|9294428|dbj|BAB02548.1| unnamed protein product [Arabidopsis thaliana] Length = 382 Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats. Identities = 114/391 (29%), Positives = 183/391 (46%), Gaps = 40/391 (10%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +K +S+ E++ GI + QIWK++ + + + L Sbjct: 1 MKLKSVFDAS--EIKSEFESAGINP---KF-AIQIWKYVIQNPDCVWDEIPSLPSAAYSL 54 Query: 64 LNQHFSIIYPEIVDEKISCDGTR-KWLLRFPARCIGGPVEIETVYIPEKSRG-------- 114 L+ F + + S DGT K L++ +E V + +R Sbjct: 55 LHSKFKTLTSSLHSLFHSSDGTTSKLLIKLQ-----NGAFVEAVVMRYDTRLGMLGGKPR 109 Query: 115 ------TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168 TLC+SSQVGC + C+FC TGT NLT+ EI+ Q++ A + +I Sbjct: 110 PGGIRSTLCISSQVGCKMGCTFCATGTMGFKSNLTSGEIVEQLVHASRI----ADIRNIV 165 Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228 M++P + GMGEPL N++ V +++ + + S +RIT+ST G V I Sbjct: 166 FMLLPW-----FDDCDQGMGEPLNNYNAVVEAVRVML-NQPFQLSPKRITISTVGIVHAI 219 Query: 229 ARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 ++ ++ V LA+SLHA ++R ++P R +PL+ L+DA + + S ++I EY+ Sbjct: 220 NKLHNDLPGVSLAVSLHAPVQEIRCQIMPAARAFPLQKLMDALQTFQKNS-QQKIFIEYI 278 Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKR-SG 345 ML G+ND + A L ++LK INLIPFNP ++ S + + F + ++ Sbjct: 279 MLDGVNDQEQHAHLLGELLKTFQVVINLIPFNPIGSTSQFETSSIQGVSRFQKILRETYK 338 Query: 346 YSSPIRTPRGLDILAACGQLKSLSKRIPKVP 376 + IR G DI ACGQL I K P Sbjct: 339 IRTTIRKEMGQDISGACGQLVVNQPDIKKTP 369 >gi|325971942|ref|YP_004248133.1| radical SAM enzyme, Cfr family [Spirochaeta sp. Buddy] gi|324027180|gb|ADY13939.1| radical SAM enzyme, Cfr family [Spirochaeta sp. Buddy] Length = 361 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 119/362 (32%), Positives = 174/362 (48%), Gaps = 33/362 (9%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 SL G+ E + E L QI+ W+ V+G+ F+ M+D+ + R L Sbjct: 10 SLYGLEAETIAEIL------SLSKSFYAKQIFNWL-VKGVYSFEAMTDLPKAERERLASL 62 Query: 68 FSIIYP-EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYI-PEKSRGTLCVSSQVGCS 125 S I G K +R + IE V + +K R T C+SSQVGC+ Sbjct: 63 MSSACSSTIHTCDTDETGATKMGVRLHDGKV-----IECVLLVDKKGRHTACLSSQVGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 C+FC TGT L+RNL+AEEI+ Q + S+ I++IV M Sbjct: 118 QGCTFCKTGTMGLLRNLSAEEIIEQYIHLLSVSKQ-----------------PITHIVYM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 GMGEPL N V +S+ + + S RRIT+ST G VP I ++ E+ + V LA+SL Sbjct: 161 GMGEPLANIAAVTRSIRYFHNPKTFNLSLRRITVSTCGIVPGILKLAEQKLPVKLAVSLV 220 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 + N LR+ ++P+N+ + + L A HY L +R T EY +L N A L Sbjct: 221 SADNRLRDRIMPVNKAWDIMALKKALLHYQRL-GGKRFTIEYCLLGNTNTDETSAKKLAS 279 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +K + +NLIP+NP G Y +++I F+ + R + R RG +I ACGQ Sbjct: 280 YVKDLDVIVNLIPWNPAEGLPYKTPTEEEIDYFALQLDRLHVNYTRRRSRGREINGACGQ 339 Query: 365 LK 366 L Sbjct: 340 LA 341 >gi|167526355|ref|XP_001747511.1| hypothetical protein [Monosiga brevicollis MX1] gi|163773957|gb|EDQ87591.1| predicted protein [Monosiga brevicollis MX1] Length = 1527 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 111/368 (30%), Positives = 177/368 (48%), Gaps = 58/368 (15%) Query: 38 IWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTR-KWLLRFPARC 96 +W+ I G+ + + + ++ +++ ++ + F++ +V E+ S D T K L+ Sbjct: 604 MWRAILHNGVTNVRDIPELPKKLYQVIEEKFALTTSRLVKEETSADNTTTKLLIELQD-- 661 Query: 97 IGGPVEIETVYIPE-------------------------KSRGTLCVSSQVGCSLTCSFC 131 +IETV + K R T+CVSSQVGC + C+FC Sbjct: 662 ---GAQIETVIMRYGRFELRNFPEDAQKKSSDGEVSFVSKERATVCVSSQVGCQMGCTFC 718 Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191 TGT L+ NL A EIL Q+ A + KI N+V MGMGEPL Sbjct: 719 ATGTMGLMSNLAAGEILEQLYHANQV-------------------EKIRNVVFMGMGEPL 759 Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDL 250 N+D V+ ++S +D S +I++ST G VP I ++ E++ V LA+SLHA + +L Sbjct: 760 DNYDAVRFAVSAMTDVRRFSLGASKISVSTVGVVPRIHQMVEDMPDVGLALSLHAPNQEL 819 Query: 251 RNILVPINRKYPLEMLIDACRHYPG------LSNARRITFEYVMLKGINDSPRDALNLIK 304 R +VP R + L+ +++A H+ I EYV++ +N + A L Sbjct: 820 REEIVPSGRSWHLDRIMEAIDHFQETRQETSRRRRTHILIEYVLIDEVNSTEEVAHQLGH 879 Query: 305 ILKGIPAKINLIPFNPWP-GCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +LK +N+IP+NP +Y + F+E ++ G + IR G D+ AACG Sbjct: 880 LLKDRDVLVNVIPYNPTDVPHDYKPPSRATTDRFNEIVRSYGLRTIIRQELGQDVNAACG 939 Query: 364 QLKSLSKR 371 QL S+R Sbjct: 940 QLVVRSQR 947 >gi|320538490|ref|ZP_08038353.1| radical SAM enzyme, Cfr family [Treponema phagedenis F0421] gi|320144661|gb|EFW36414.1| radical SAM enzyme, Cfr family [Treponema phagedenis F0421] Length = 356 Score = 309 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 117/359 (32%), Positives = 174/359 (48%), Gaps = 33/359 (9%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L G++ EE+ + + QI++WI G+ F M+++S R L Sbjct: 18 LTGLLPEEIYRVC------ALPQKFQGEQIFRWI-ASGVESFAEMTNLSLSERERLANSA 70 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVY-IPEKSRGTLCVSSQVGCSLT 127 I ++ DGT K + +ETV I R T CVS QVGC ++ Sbjct: 71 VIRGSKLAVILKDPDGTIKLGIDLYD-----SQRVETVLLIDRAGRKTACVSCQVGCPMS 125 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 CSFC TG RNLTA EI+ Q L + G K+ NIV MGM Sbjct: 126 CSFCQTGQLGFTRNLTAAEIVEQFLHLEKIAG------------------KLDNIVFMGM 167 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 GEP+ N ++K++++ + G + S RRITLSTSG I +G + LA+SL Sbjct: 168 GEPMLNLPAIRKAIAVLTHKKGRALSPRRITLSTSGICKGIYELGSLGPDIRLAVSLTTA 227 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 + LR L+PI ++ LE L A + + R+T E +++GIN +P A +I+ Sbjct: 228 NTALRTKLMPITKQNSLEDLKKAIAFFNEKTKK-RVTLELALMRGINTAPSFAREVIEFS 286 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 KG+ INLIP+NP +Y +K+++ F ++++G +R RG I ACGQL Sbjct: 287 KGLNVHINLIPWNPVESLDYASPTEKELIGFESLLRKAGIPVTLRHRRGKTICGACGQL 345 >gi|15639062|ref|NP_218508.1| hypothetical protein TP0068 [Treponema pallidum subsp. pallidum str. Nichols] gi|189025302|ref|YP_001933074.1| hypothetical protein TPASS_0068 [Treponema pallidum subsp. pallidum SS14] gi|81556505|sp|O83107|RLMN_TREPA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829921|sp|B2S216|RLMN_TREPS RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|3322324|gb|AAC65061.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum str. Nichols] gi|189017877|gb|ACD70495.1| hypothetical protein TPASS_0068 [Treponema pallidum subsp. pallidum SS14] gi|291059484|gb|ADD72219.1| radical SAM enzyme, Cfr family [Treponema pallidum subsp. pallidum str. Chicago] Length = 340 Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats. Identities = 113/359 (31%), Positives = 168/359 (46%), Gaps = 33/359 (9%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L G++ EE+++ R R Q+++WI G DF MSD+S E R L + Sbjct: 7 LSGLLPEEIQKVC------AFAERFRGVQVFRWI-AAGCTDFHAMSDLSSETRARLARAC 59 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK-SRGTLCVSSQVGCSLT 127 I + DGT K + + +E V + ++ SR T C+S QVGC + Sbjct: 60 VISDTRVYTTLRDVDGTLKLGIELKDKR-----RVEAVLLVDQVSRKTACLSCQVGCPMA 114 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C+FC TG RNL+A EI+ Q L +G + N+V MGM Sbjct: 115 CAFCQTGQLGFARNLSASEIVEQFLHLERCVG------------------TLDNVVFMGM 156 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 GEP+ N D V +++ I S G S++RIT+STSG I + + + V LA+SL Sbjct: 157 GEPMLNLDAVCRAIEILSHPQGRDLSEKRITISTSGHCRGIYSLADRALQVRLAVSLTTA 216 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 + LR L+P L L A R++ S R+T E +++G+N S R A +I Sbjct: 217 NAPLRARLMPRAAHDSLAKLKSAIRYFNEKSGK-RVTLELALMRGVNTSERHAQEVIDFA 275 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 G+ +NLIP+NP + + ++ F + R+ R RG I ACGQL Sbjct: 276 HGLNVHVNLIPWNPVASIHFETPREVEVAHFEALLMRARIPVTRRYQRGNGIGGACGQL 334 >gi|149197716|ref|ZP_01874766.1| hypothetical protein LNTAR_20823 [Lentisphaera araneosa HTCC2155] gi|149139286|gb|EDM27689.1| hypothetical protein LNTAR_20823 [Lentisphaera araneosa HTCC2155] Length = 343 Score = 309 bits (791), Expect = 6e-82, Method: Composition-based stats. Identities = 118/327 (36%), Positives = 174/327 (53%), Gaps = 25/327 (7%) Query: 49 DFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVY 107 D D + L+ HF I +I+ + S DG K L++ + IETV Sbjct: 37 DLDSAFDNPK-FVELVRDHFEIPQLKIISRQDSKIDGASKLLVQTED-----GLNIETVI 90 Query: 108 IP-EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166 + R +LC+SSQ GC+ C+FC T T RNLT EI+ QV+LA Sbjct: 91 LRIGTGRTSLCISSQAGCTEKCTFCSTATLGFKRNLTLAEIIGQVILA------------ 138 Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226 G ++ RK+ NIV MGMGEPL N DNV KSL I S + S +R+T+ST G Sbjct: 139 --GEILRKEDRKVRNIVFMGMGEPLRNTDNVLKSLEIMLSSAYMGLSSKRVTVSTIGITD 196 Query: 227 NIARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFE 285 NI ++ V LA+SLHA ++ +R+IL+PIN+ +P+E + + L++ + + Sbjct: 197 NITKLRHSFPEVNLALSLHASNDQVRDILMPINKTFPMETIKETLLSAQELASGD-LMIQ 255 Query: 286 YVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKRS 344 Y+++K +NDSP A L LKGI INLIP+N G + CS ++ + F + ++ S Sbjct: 256 YLLIKDLNDSPEQAQELAAFLKGINCIINLIPYNDSMGMGNWKCSSEEKMSAFQDVLQES 315 Query: 345 GYSSPIRTPRGLDILAACGQLKSLSKR 371 + R G DI AACGQL + +++ Sbjct: 316 DFQVTRRHSLGRDIDAACGQLAAKNQK 342 >gi|226498566|ref|NP_001144705.1| hypothetical protein LOC100277741 [Zea mays] gi|195646072|gb|ACG42504.1| hypothetical protein [Zea mays] Length = 381 Score = 307 bits (786), Expect = 3e-81, Method: Composition-based stats. Identities = 111/367 (30%), Positives = 166/367 (45%), Gaps = 47/367 (12%) Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVR-GIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75 + GI + + IWK++ D G+ + LL Q F + Sbjct: 20 IRSEFSAAGISAHFIPL----IWKYVLQNPRCSDLDGVPSLPAAAYALLRQKFRPTTSTL 75 Query: 76 VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG--------------TLCVSSQ 121 S D T LL C+ +E V + +R TLCVSSQ Sbjct: 76 TAAADSKDRTTTKLL----ICLQNGESVEAVVMRYDTRLGKYDGKPRPGGVRSTLCVSSQ 131 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC + C FC TGT NL++ EI+ Q++ A +I N Sbjct: 132 VGCKMGCRFCATGTMGFKSNLSSGEIVEQLVHASRYS-------------------QIRN 172 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLA 240 +V MGMGEP+ N++ + +++ + + S +RIT+ST G + I + G+ V LA Sbjct: 173 VVFMGMGEPMNNYNALVEAIGVFT-GSPFQLSPKRITVSTVGIIHGINKFNGDLPKVNLA 231 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA D+R ++P R +PL L++A + Y S + I EY+ML G+ND A Sbjct: 232 VSLHAPDQDIRCQIMPAARAFPLGKLMNALQSYQNES-KQTIFIEYIMLDGVNDQEEHAH 290 Query: 301 NLIKILKGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLDI 358 L K+L+ A +NLIPFNP + S +++ F + +K + IR G DI Sbjct: 291 QLGKLLETFKAVVNLIPFNPIGSSSNFKTSSDQNVKNFQKVLKGIYRIRTTIRQQMGQDI 350 Query: 359 LAACGQL 365 ACGQL Sbjct: 351 AGACGQL 357 >gi|242036573|ref|XP_002465681.1| hypothetical protein SORBIDRAFT_01g043670 [Sorghum bicolor] gi|241919535|gb|EER92679.1| hypothetical protein SORBIDRAFT_01g043670 [Sorghum bicolor] Length = 381 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 106/347 (30%), Positives = 159/347 (45%), Gaps = 45/347 (12%) Query: 38 IWKWIYVR-GIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCD-GTRKWLLRFPAR 95 IWK++ D G+ + LL Q F + S D T K L+ Sbjct: 37 IWKYVLQNPRCSDLDGVPSLPAAAYALLRQKFRPTTSTLTAAADSKDRTTTKLLISLQ-- 94 Query: 96 CIGGPVEIETVYIPEKSRG--------------TLCVSSQVGCSLTCSFCYTGTQKLVRN 141 +E V + +R TLCVSSQVGC + C FC TGT N Sbjct: 95 ---NGESVEAVVMRYDTRLGKYDGKPRPGGLRSTLCVSSQVGCKMGCRFCATGTMGFKSN 151 Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 L++ EI+ Q++ A +I N+V MGMGEP+ N++ + +++ Sbjct: 152 LSSGEIIEQLVHASRYS-------------------QIRNVVFMGMGEPMNNYNALVEAI 192 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRK 260 + + S +RIT+ST G + I + + V LA+SLHA D+R ++P R Sbjct: 193 GVFT-GSPFQLSPKRITVSTVGIIHGINKFNADLPKVNLAVSLHAPDQDIRCQIMPAARA 251 Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 +PL L++A + Y S + I EY+ML G+ND A L K+L+ A +NLIPFNP Sbjct: 252 FPLVKLMNALQSYQNES-KQTIFIEYIMLDGVNDQEEHAHQLGKLLETFKAVVNLIPFNP 310 Query: 321 WPG-CEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLDILAACGQL 365 + S +++ F + +K + +R G DI ACGQL Sbjct: 311 IGSLSNFKTSSDQNVKKFQKVLKGIYHIRTTVRQQMGQDIAGACGQL 357 >gi|302851668|ref|XP_002957357.1| hypothetical protein VOLCADRAFT_42666 [Volvox carteri f. nagariensis] gi|300257316|gb|EFJ41566.1| hypothetical protein VOLCADRAFT_42666 [Volvox carteri f. nagariensis] Length = 307 Score = 305 bits (782), Expect = 7e-81, Method: Composition-based stats. Identities = 111/304 (36%), Positives = 164/304 (53%), Gaps = 20/304 (6%) Query: 71 IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP------EKSRGTLCVSSQVGC 124 + + DGTRK + G +ETV IP + R T+CVSSQVGC Sbjct: 1 GGLRLSQVARAADGTRKLVFTLTEGEAAGG-SVETVLIPIVRQQGLRDRLTICVSSQVGC 59 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 ++ C FCYTG L+ NLT +I+ QV+ AR + +++N+V Sbjct: 60 AMNCQFCYTGRMGLLGNLTTAQIVEQVVEARR------------FLAQEGERTQLTNLVF 107 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N + V + I S +GL S ++T+ST G VP + V V +A+SLH Sbjct: 108 MGMGEPLHNTEAVLAAADIVSHYLGLHISHNKVTISTVGLVPEMRSVVARSRVQMALSLH 167 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++++R+ +VP+NR+Y L L A G S++R + EY ML GIND+ +DA L+ Sbjct: 168 ATTDEVRDWIVPVNRRYDLATLTAALEE-LGNSSSRSLLIEYTMLHGINDTLQDAHRLVA 226 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L + K+NLI FNP G + S ++ + F + ++G IR RG D +AACGQ Sbjct: 227 MLARVNCKVNLIMFNPHAGTRFQPSTEEAVTAFRSALVQAGMVCTIRDSRGDDEMAACGQ 286 Query: 365 LKSL 368 L ++ Sbjct: 287 LGNV 290 >gi|297834876|ref|XP_002885320.1| hypothetical protein ARALYDRAFT_318717 [Arabidopsis lyrata subsp. lyrata] gi|297331160|gb|EFH61579.1| hypothetical protein ARALYDRAFT_318717 [Arabidopsis lyrata subsp. lyrata] Length = 382 Score = 305 bits (781), Expect = 9e-81, Method: Composition-based stats. Identities = 113/391 (28%), Positives = 181/391 (46%), Gaps = 40/391 (10%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 +K +S+ E++ GI IWK++ + + + L Sbjct: 1 MKLKSVFDAS--EIKSEFESAGINPNF----AIPIWKYVIQNPDCVWDEIPSLPSAAYSL 54 Query: 64 LNQHFSIIYPEIVDEKISCDGTR-KWLLRFPARCIGGPVEIETVYIPEKSRG-------- 114 L+ F + + S DGT K L++ +E V + +R Sbjct: 55 LHSKFKTLTSSLHSLFHSSDGTTSKLLIKLQ-----NGAFVEAVVMRYDTRLGMLGGKPR 109 Query: 115 ------TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168 TLC+SSQVGC + C+FC TGT NLT+ EI+ Q++ A + +I Sbjct: 110 PGGIRSTLCISSQVGCKMGCTFCATGTMGFKSNLTSGEIVEQLVHASRI----ADIRNIV 165 Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228 M++P + GMGEPL N++ V +++ + S +RIT+ST G V I Sbjct: 166 FMLLPW-----FDDCDQGMGEPLNNYNAVVEAVRVML-KQPFQLSPKRITISTVGIVHAI 219 Query: 229 ARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 ++ ++ V LA+SLHA ++R ++P R +PL+ L+DA + + S ++I EY+ Sbjct: 220 NKLDNDLPGVSLAVSLHAPVQEIRCQIMPAARAFPLQKLMDALQTFQKNS-QQKIFIEYI 278 Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPW-PGCEYLCSDQKDIVTFSECIKR-SG 345 ML G+ND + A L ++LK INLIPFNP ++ S + + +F + ++ Sbjct: 279 MLDGVNDQEQHAHLLGELLKTFQVVINLIPFNPIGSTSQFETSSIQSVSSFQKILRETYK 338 Query: 346 YSSPIRTPRGLDILAACGQLKSLSKRIPKVP 376 + IR G DI ACGQL I K P Sbjct: 339 IRTTIRKEMGQDISGACGQLVVNQPDIKKTP 369 >gi|218192280|gb|EEC74707.1| hypothetical protein OsI_10424 [Oryza sativa Indica Group] Length = 388 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 108/368 (29%), Positives = 165/368 (44%), Gaps = 49/368 (13%) Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVR-GIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75 + GI + + IWK++ D + + LL Q F + Sbjct: 27 IRAEFAAAGISPHFIPL----IWKYVLQNPRCGDLDAVPSLPAAAYALLRQKFQPTTSTL 82 Query: 76 VDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRG--------------TLCVSS 120 S D T K L+R +E V + +R TLCVSS Sbjct: 83 TTAAESKDHTTTKLLIRL-----KNGESVEAVIMRYDTRLGKYDGKPRPGGVRSTLCVSS 137 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC + C FC TGT NL++ EI+ Q++ A +I Sbjct: 138 QVGCKMGCRFCATGTMGFKSNLSSGEIVEQLVHASRYS-------------------QIR 178 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VML 239 N+V MGMGEPL N+ + +++ + S +RIT+ST G + +I + ++ + L Sbjct: 179 NVVFMGMGEPLNNYTALVEAIQVLI-GSPFQLSPKRITVSTVGIIHSINKFNNDLPNINL 237 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA D+R ++P R +PL L++A + Y S + I EY+ML G+ND + A Sbjct: 238 AVSLHAPDQDIRCHIMPAARAFPLVKLMNALQSYQNES-KQTIFIEYIMLDGVNDQEQHA 296 Query: 300 LNLIKILKGIPAKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLD 357 L K+L+ A +NLIPFNP + S + ++ F + ++ + IR G D Sbjct: 297 HQLGKLLEMFKAVVNLIPFNPIGSSNNFKTSSEHNVKKFQKILRGIYNIRTTIRQQMGQD 356 Query: 358 ILAACGQL 365 I ACGQL Sbjct: 357 IAGACGQL 364 >gi|115451403|ref|NP_001049302.1| Os03g0202300 [Oryza sativa Japonica Group] gi|108706720|gb|ABF94515.1| radical SAM enzyme, Cfr family protein, expressed [Oryza sativa Japonica Group] gi|113547773|dbj|BAF11216.1| Os03g0202300 [Oryza sativa Japonica Group] Length = 388 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 108/368 (29%), Positives = 165/368 (44%), Gaps = 49/368 (13%) Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVR-GIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75 + GI + + IWK++ D + + LL Q F + Sbjct: 27 IRAEFAAAGISPHFIPL----IWKYVLQNPRCGDLDAVPSLPAAAYALLRQKFQPTTSTL 82 Query: 76 VDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRG--------------TLCVSS 120 S D T K L+R +E V + +R TLCVSS Sbjct: 83 TTAAESKDRTTTKLLIRL-----KNGESVEAVIMRYDTRLGKYDGKPRPGGVRSTLCVSS 137 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC + C FC TGT NL++ EI+ Q++ A +I Sbjct: 138 QVGCKMGCRFCATGTMGFKSNLSSGEIVEQLVHASRYS-------------------QIR 178 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VML 239 N+V MGMGEPL N+ + +++ + S +RIT+ST G + +I + ++ + L Sbjct: 179 NVVFMGMGEPLNNYTALVEAIQVLI-GSPFQLSPKRITVSTVGIIHSINKFNNDLPNINL 237 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA D+R ++P R +PL L++A + Y S + I EY+ML G+ND + A Sbjct: 238 AVSLHAPDQDIRCHIMPAARAFPLVKLMNALQSYQNES-KQTIFIEYIMLDGVNDQEQHA 296 Query: 300 LNLIKILKGIPAKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLD 357 L K+L+ A +NLIPFNP + S + ++ F + ++ + IR G D Sbjct: 297 HQLGKLLEMFKAVVNLIPFNPIGSSNNFKTSSEHNVKKFQKILRGIYNIRTTIRQQMGQD 356 Query: 358 ILAACGQL 365 I ACGQL Sbjct: 357 IAGACGQL 364 >gi|308804299|ref|XP_003079462.1| radical SAM domain-containing protein-like (ISS) [Ostreococcus tauri] gi|116057917|emb|CAL54120.1| radical SAM domain-containing protein-like (ISS) [Ostreococcus tauri] Length = 385 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 122/403 (30%), Positives = 187/403 (46%), Gaps = 65/403 (16%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIY-VRGIRDFQGMSDISQEVRH 62 + ++LI + L + + R Q+ +Y R R + M + +E+R Sbjct: 1 MSAKTLIASSLDVLRRVVSE---ECAAPAWRAKQLVDSLYGKRRARAIEDMELLPREMRR 57 Query: 63 LLNQH-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE----------- 110 + +S ++V + DG K +R +G +E V IP+ Sbjct: 58 AMEDAGWSTGRLDVVKGSLGRDGAGKISVR-----VGERELVEAVGIPDASCYARDGSGE 112 Query: 111 ------------------KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 K+R T CVSSQVGC++ CSFC TG Q RNL+A EI+ QVL Sbjct: 113 VLGRADVETMFRGVDGWDKNRLTACVSSQVGCAMKCSFCATGLQGFKRNLSASEIVSQVL 172 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 L G +++S++V MGMGEP+ N V ++ ++ + Sbjct: 173 ELEELYG-----------------KRVSDVVFMGMGEPMLNMKAVVGAIRCLNED--IGI 213 Query: 213 SKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 R IT+ST G ++A++ +E + LAISLHA + R +VP + YP E L+D + Sbjct: 214 GGRHITVSTVGIPNSLAKLAKEKLQATLAISLHAPDQETRLRIVPSAKHYPYEDLLDDVK 273 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK---GIPAKINLIPFNPWPGCEYLC 328 Y + R+TFEY +L G+NDSP A L +ILK G A +N+IP+N G +++ Sbjct: 274 MYFRETGR-RVTFEYTLLAGVNDSPSQAQALSRILKRKFGAGAHLNVIPWNSIEGVDHVK 332 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 + + F + G S IR RG D+ AACG L +R Sbjct: 333 PSRNAVHRFCGAL--GGISHTIRRTRGDDVSAACGMLTGDFER 373 >gi|303271119|ref|XP_003054921.1| predicted protein [Micromonas pusilla CCMP1545] gi|226462895|gb|EEH60173.1| predicted protein [Micromonas pusilla CCMP1545] Length = 327 Score = 303 bits (777), Expect = 3e-80, Method: Composition-based stats. Identities = 102/332 (30%), Positives = 160/332 (48%), Gaps = 24/332 (7%) Query: 54 SDISQEVRHLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPE-- 110 +++ + +N F+++ + + S DG T K ++ +E V + Sbjct: 1 TEVPKFAVEGVNDAFALMTTTVAECHTSKDGSTTKMVVELQD-----GHRVEAVVMRHAI 55 Query: 111 ----KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166 + R TLCVSSQVGC + C+FC TGT + NLT EIL Q++ A+ L + Sbjct: 56 HEGGRERNTLCVSSQVGCKMGCTFCATGTLGELGNLTCGEILEQLVHAQRLFRGDGDGDG 115 Query: 167 IEGMVIPSVGRK--------ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRIT 218 +G + R I+N+V MGMGEPL N+D V +L +D + + R+T Sbjct: 116 GDGDGGGASRRVSGRRRGGGITNLVFMGMGEPLNNYDAVIAALGPITDPKLFALAPSRVT 175 Query: 219 LSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277 +ST G VP + + + GV LA+SLHA + LR +VP R Y L L++A Y Sbjct: 176 VSTVGVVPRMKTLTRDAPGVALALSLHAPNQALRESIVPTARAYKLPALMEAMDKYLASG 235 Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP-GCEYLCSDQKDIVT 336 + EY +L+G+ND A L ++L+G +N IP+NP + ++ + Sbjct: 236 PKVKTMVEYCVLRGVNDGVEHARELGELLRGRDVIVNFIPYNPTDVPMGHAPPTKEAVKA 295 Query: 337 FSECIK--RSGYSSPIRTPRGLDILAACGQLK 366 + + G + +R G DI ACGQL Sbjct: 296 MVDVLTGPEFGQFTTVRHEMGQDIAGACGQLA 327 >gi|218660671|ref|ZP_03516601.1| hypothetical protein RetlI_14322 [Rhizobium etli IE4771] Length = 245 Score = 301 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 145/224 (64%), Positives = 184/224 (82%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K SLIG+ REE+ AL + G+ ++ ++MR +Q+W WIYVRG+ DF M+++++++R +L Sbjct: 22 EKPSLIGLSREEMAAALREKGVAEKQIKMRVAQLWNWIYVRGVSDFDHMTNVAKDMREML 81 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 QHF+I PEIV+E++S DGTRKWLLRFPAR G PVEIE VYIPE+ RGTLC+SSQVGC Sbjct: 82 KQHFTIARPEIVEEQVSNDGTRKWLLRFPARGAGRPVEIEAVYIPEEGRGTLCISSQVGC 141 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 +LTCSFC+TGTQ+LVRNLTAEEIL Q+LLAR LGDFP E +G ++P+ GRK+SNIVM Sbjct: 142 TLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNIVM 201 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228 MGMGEPL NFD VK++L IA+D GLS SKRR+TLSTSG VP I Sbjct: 202 MGMGEPLYNFDAVKQALLIATDGDGLSLSKRRVTLSTSGVVPEI 245 >gi|308172367|ref|YP_003919072.1| florfenicol/chloramphenicol resistance like protein [Bacillus amyloliquefaciens DSM 7] gi|307605231|emb|CBI41602.1| florfenicol/chloramphenicol resistance like protein [Bacillus amyloliquefaciens DSM 7] gi|328552188|gb|AEB22680.1| chloramphenicol/florfenicol resistance protein [Bacillus amyloliquefaciens TA208] gi|328910459|gb|AEB62055.1| florfenicol/chloramphenicol resistance like protein [Bacillus amyloliquefaciens LL3] Length = 348 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 109/366 (29%), Positives = 180/366 (49%), Gaps = 41/366 (11%) Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPE 74 ++E L + P R QI I+ I F ++ + + +R +L + F S++ Sbjct: 10 IQEFLKQNEFPD----FRMKQITNAIFHGRINHFNEITVLPKSLRKMLVKEFGESVLNIA 65 Query: 75 IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLCVSSQVGCSLTCSFCYT 133 + E+ S T K L I G +IETV + K+ + C+SSQ GC C+FC T Sbjct: 66 ALKEQHSEQVT-KVLFE-----ISGDEKIETVNMKYKAGWESFCISSQCGCHFGCTFCAT 119 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 G L NLT++EI Q+L G I +I MGMGE L N Sbjct: 120 GDIGLKHNLTSDEITDQILYF------------------HLKGHSIDSISFMGMGEALAN 161 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252 V +L + ++ + S RR+++ST G +P I ++ + V L SLH+ N+ R+ Sbjct: 162 -RQVFDALHVLTNPELFALSPRRLSISTIGIIPGIKKMTQNYPQVNLTFSLHSPFNEQRS 220 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI--- 309 L+PIN +YPL ++D + +++ ++ Y+ML G+NDS A ++K+L+G Sbjct: 221 KLMPINERYPLMEVMDTLDEHIRVTSR-KVYIAYIMLPGVNDSIDHANEVVKLLRGRYKR 279 Query: 310 --PAKINLIPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +N+I +NP + ++ +V F + +K +G + IR+ G+DI AACGQL Sbjct: 280 GNLFHVNIIRYNPTVSSPMRFKEVNENQVVNFYKTLKSAGINVTIRSQFGIDIDAACGQL 339 Query: 366 KSLSKR 371 ++ Sbjct: 340 YGNYQK 345 >gi|218682815|ref|ZP_03530416.1| radical SAM enzyme, Cfr family protein [Rhizobium etli CIAT 894] Length = 240 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 154/223 (69%), Positives = 181/223 (81%) Query: 159 GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRIT 218 GDFP E +G ++P+ GRK+SNIVMMGMGEPL NFD VK++L IA+D GLS S+RR+T Sbjct: 7 GDFPDREAPQGTIMPAEGRKVSNIVMMGMGEPLYNFDAVKQALLIATDGDGLSLSRRRVT 66 Query: 219 LSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN 278 LSTSG VP I R GEEIGVMLAISLHAV +DLR+ILVPIN+KYPL+ LI+AC+ YPGLSN Sbjct: 67 LSTSGVVPEIFRTGEEIGVMLAISLHAVRDDLRDILVPINKKYPLKELIEACKAYPGLSN 126 Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFS 338 ARRITFEYVMLK +NDS DA LIK+LKG+PAKINLIPFNPWPG Y CSD + I F+ Sbjct: 127 ARRITFEYVMLKDVNDSLEDAKGLIKLLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFA 186 Query: 339 ECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQ 381 + I +GY+SPIRTPRG DILAACGQLKS S+R+ K R + Sbjct: 187 DFINSAGYASPIRTPRGRDILAACGQLKSESERMRKTERLAFE 229 >gi|212634296|ref|YP_002310821.1| hypothetical protein swp_1448 [Shewanella piezotolerans WP3] gi|212555780|gb|ACJ28234.1| Conserved hypothetical protein [Shewanella piezotolerans WP3] Length = 242 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 106/248 (42%), Positives = 146/248 (58%), Gaps = 16/248 (6%) Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 ++ EI+ Q+ +G V + R I+N+VMMGMGEPL N NV ++ Sbjct: 1 MSVSEIVGQIWRVADFIG----------FVKDTGERPITNVVMMGMGEPLLNLKNVIPAM 50 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKY 261 I D G S SKRR+T+STSG VP + +G+ + V LA+S+HA +++LR++LVP+N+KY Sbjct: 51 DIMLDDFGFSLSKRRVTVSTSGVVPALDILGDALDVALAVSIHAPNDELRDVLVPVNKKY 110 Query: 262 PLEMLIDACRHYPGLSN--ARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFN 319 PLE + R Y SN R+T EYVML INDS A L K++K P K+NLIPFN Sbjct: 111 PLEDFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHELAKLMKDTPCKVNLIPFN 170 Query: 320 PWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL----KSLSKRIPKV 375 P+PG Y S I FS+ + G + +R RG DI AACGQL + +KR+ K Sbjct: 171 PYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAACGQLAGDIRDRTKRLAKK 230 Query: 376 PRQEMQIT 383 Q+ QI+ Sbjct: 231 QMQQNQIS 238 >gi|183220754|ref|YP_001838750.1| ribosomal RNA large subunit methyltransferase N [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910855|ref|YP_001962410.1| ribosomal RNA large subunit methyltransferase N [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|205829783|sp|B0SGA8|RLMN_LEPBA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|205829784|sp|B0SPQ8|RLMN_LEPBP RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gi|167775531|gb|ABZ93832.1| Fe-S-cluster redox enzyme [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779176|gb|ABZ97474.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 353 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 123/375 (32%), Positives = 182/375 (48%), Gaps = 36/375 (9%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L G ++ELEE + +G+ + R +QI+ IY + +S+EVR L +H Sbjct: 8 LKGKTKKELEEICVSLGLE----KYRAAQIYTGIYKSRYTTIDQFTTLSKEVREKLKEHT 63 Query: 69 SIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKS--RGTLCVSSQVGCS 125 EI + +S DGTRK+ +G EIE V+IP R T+C+SSQ+GC+ Sbjct: 64 QYPEIEIGRDLVSKEDGTRKFTF-----YVGENKEIEAVWIPSGDGGRKTICISSQIGCT 118 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L C FC TG + NL +IL QVL L+GD + +NIV M Sbjct: 119 LNCKFCATGLLEYKGNLQTWQILDQVLQVERLVGD-----------------RATNIVFM 161 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244 GMGEP+ N+ +V K+ I D RIT+ST+G I R E + AISL+ Sbjct: 162 GMGEPMHNYFSVMKAAHILRDKDAFGLGALRITISTAGVTTGINRFIENKEPFNFAISLN 221 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 + + R+ ++ +N K+PLE LID+ + + + ITFEYVM+ +N +A L K Sbjct: 222 HPNPNARSSVMDVNDKHPLEKLIDSAKRFTKELDR-AITFEYVMIPDVNMGRDNAERLAK 280 Query: 305 ILKGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI--RTPRGLDILAA 361 I + + KIN+IP N + ++ F + ++ ++PI R G DI A Sbjct: 281 IARSVNKCKINVIPLN-TDFTGWRRPTDDEVKDFVMHL-KAKTTAPILNRRSPGRDINGA 338 Query: 362 CGQLKSLSKRIPKVP 376 CG L R Sbjct: 339 CGMLALKGIRSETTK 353 >gi|255100607|ref|ZP_05329584.1| florfenicol/chloramphenicol resistance protein [Clostridium difficile QCD-63q42] Length = 416 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 119/377 (31%), Positives = 179/377 (47%), Gaps = 40/377 (10%) Query: 14 REELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SII 71 +++++ + + +P+ R Q+ ++++GI F+ M + + +R L + F +++ Sbjct: 4 YKKMKQLIADMRLPE----YRYKQLLDAVFLQGIMRFEDMKLLPKTLREKLVEQFGETVV 59 Query: 72 YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGT-LCVSSQVGCSLTCSF 130 + + + S T K L +ETV + K C+SSQ GC C F Sbjct: 60 EIKAIHHEKSMQ-TDKVLFELSD-----GNRVETVGLFYKEGWNSFCISSQSGCGFGCKF 113 Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 C TGT L RNLT +EI Q+L G I++I MGMGEP Sbjct: 114 CATGTLGLRRNLTVDEITDQILYFMQQ------------------GCSINSISFMGMGEP 155 Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSND 249 N V ++L + S+RRIT+ST G VP I ++ E V LA SLHA ++ Sbjct: 156 FAN-PQVFEALHDLTAPELFGLSQRRITISTIGIVPGIQKLTREYPQVNLAYSLHAPTDR 214 Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--- 306 LR L+PI + YPL ++D + +N ++ Y+MLK +NDS R A L K+L Sbjct: 215 LRETLMPITKTYPLGQVLDTLDQHIRQTNR-KVFLAYIMLKDVNDSDRHAEQLTKLLFKH 273 Query: 307 -KGIP-AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 K +P ++LIP+N E + S I F I +G S IRT G DI AACG Sbjct: 274 KKYLPLYHLDLIPYNQTTVTETMVPSSHTRIKAFCRIIHNAGISVNIRTQFGSDINAACG 333 Query: 364 QLKSLSKRIPKVPRQEM 380 QL + K + M Sbjct: 334 QLAGAYRDDQKQGERTM 350 >gi|240147073|ref|ZP_04745674.1| radical SAM enzyme, Cfr family [Roseburia intestinalis L1-82] gi|257200758|gb|EEU99042.1| radical SAM enzyme, Cfr family [Roseburia intestinalis L1-82] Length = 265 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 91/289 (31%), Positives = 155/289 (53%), Gaps = 29/289 (10%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K + M EEL+ + IG R Q+++W++ + F M+++S+ ++ L Sbjct: 4 EKTDIKSMNLEELKSYMESIG----EKPFRAKQLYQWMHEKQAASFDEMTNLSKSLQEKL 59 Query: 65 NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + + + ++S DGTRK+L + IE+V + K ++C+SSQVG Sbjct: 60 KKECHFVSLKQEAVQVSKIDGTRKYLFALDDGNV-----IESVLMRYKHGNSVCISSQVG 114 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C FC + LVR LT E+L Q+ G+ +++N+V Sbjct: 115 CRMGCRFCASTLDGLVRGLTPSEMLDQIYRITRDTGE-----------------RVANVV 157 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242 +MG GEP+ NFDN+ K + + +D GL+ S+R +T+ST G VP + + + ++ + LA+S Sbjct: 158 VMGTGEPMDNFDNLLKFIELLTDENGLNISQRNVTVSTCGIVPKMRELADKKLQITLALS 217 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291 LHA S + R L+PI KY + +I+ACR+Y + R+TFEY ++ G Sbjct: 218 LHASSQEKRLELMPIANKYEIHEVIEACRYYFEQTGR-RVTFEYSLVGG 265 >gi|312903419|ref|ZP_07762599.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0635] gi|310633295|gb|EFQ16578.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0635] Length = 349 Score = 299 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 111/367 (30%), Positives = 183/367 (49%), Gaps = 41/367 (11%) Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPE 74 ++E L + P R QI I+ I +F ++ + + +R +L + F SI+ Sbjct: 10 IQEFLKQNKFPN----YRMKQITNAIFPGRINNFNEITVLPKSLRDMLIEEFGESILNIV 65 Query: 75 IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLCVSSQVGCSLTCSFCYT 133 + + S + K L I G +IETV + K+ + C+SSQ GC+ C FC T Sbjct: 66 PLKAQQSTQVS-KVLF-----GISGDEKIETVNMKYKAGWESFCISSQCGCNFGCKFCAT 119 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 G L RNLT++EI Q+L G I +I MGMGE L N Sbjct: 120 GDIGLKRNLTSDEITDQILYF------------------HLQGHSIDSISFMGMGEALAN 161 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252 V +L++ +D + S RR+++ST G +PNI ++ + V L SLH+ N+ R+ Sbjct: 162 V-QVFDALNVLTDPALFALSPRRLSISTIGIIPNIKKLTQNYPQVNLTFSLHSPFNEQRS 220 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI--- 309 L+PIN +YPL ++D + +++ ++ Y+ML G+NDS A ++ +L+G Sbjct: 221 ELMPINERYPLSDVMDTLDEHIRVTSR-KVYIAYIMLHGVNDSIEHAKEVVNLLRGRYRS 279 Query: 310 --PAKINLIPFNPWPGC--EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +N+I +NP + +++K +V F + +K +G IR+ G+DI AACGQL Sbjct: 280 GNLYHVNIIRYNPTVSSRMRFEEANEKCLVNFYKELKSAGIKVTIRSQFGIDIDAACGQL 339 Query: 366 KSLSKRI 372 ++ Sbjct: 340 YGNYQKT 346 >gi|194694544|gb|ACF81356.1| unknown [Zea mays] Length = 266 Score = 299 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 112/257 (43%), Positives = 157/257 (61%), Gaps = 14/257 (5%) Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168 P + R T+CVSSQVGC++ C FC+TG L ++L+ EI+ Q + AR L D G Sbjct: 3 PVRGRTTICVSSQVGCAMNCQFCFTGRMGLRKHLSTAEIVEQAVFARRLFSDELGS---- 58 Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228 I+N+V MGMGEP N DNV K+ +I D GL FS R++T+STSG VP + Sbjct: 59 ----------INNVVFMGMGEPFHNIDNVIKASAIMVDEQGLHFSPRKVTVSTSGLVPQL 108 Query: 229 ARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVM 288 R +E LA+SL+A ++++RN ++PINRKY L +L+ R L + + FEYVM Sbjct: 109 KRFLQESNCSLAVSLNATTDEVRNWIMPINRKYNLNLLLGTLREELNLRQKQIVLFEYVM 168 Query: 289 LKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSS 348 L G+NDS DA LI++++GIP KINLI FNP G ++ + I+ F + + G + Sbjct: 169 LSGVNDSMDDAKRLIELVQGIPCKINLISFNPHGGSQFKPTPDDKIIEFRNVLIQGGLTV 228 Query: 349 PIRTPRGLDILAACGQL 365 +R RG D +AACGQL Sbjct: 229 FVRLSRGDDQMAACGQL 245 >gi|226314089|ref|YP_002773985.1| chloramphenicol/florfenicol resistance protein [Brevibacillus brevis NBRC 100599] gi|226097039|dbj|BAH45481.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 343 Score = 298 bits (764), Expect = 9e-79, Method: Composition-based stats. Identities = 110/352 (31%), Positives = 172/352 (48%), Gaps = 45/352 (12%) Query: 29 RHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH-----FSIIYP-EIVDEKISC 82 + R +QI I+ + I +++ M+ + + +R LN+ SI E+ +++S Sbjct: 18 KQPEYRYAQIMDAIFKQNIGEYERMTILPKFLRDELNRILGPNVCSIAPVKELTSKQVS- 76 Query: 83 DGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLCVSSQVGCSLTCSFCYTGTQKLVRN 141 K L I G ++E V + + + C+S+Q GC C FC TGT L RN Sbjct: 77 ----KVLF-----AIPGDEQVEAVRLTYERGWKSYCISTQCGCGFRCKFCATGTIGLKRN 127 Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 LTA+EI Q+L R G + +I MGMGE L N ++ +++ Sbjct: 128 LTADEITDQLLYFR------------------LNGHSLDSISFMGMGEALAN-PHIFEAM 168 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRK 260 +I +D RRIT+ST G +P I ++ E V L SLH+ +D R+ L+PIN + Sbjct: 169 TILTDPYLFGLGHRRITISTIGLLPGIDKLTREFPQVNLTFSLHSPFDDQRSELMPINDR 228 Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-----KINL 315 +P+ ++ A + + ++ Y++L+G+NDS A + ++L+G A +NL Sbjct: 229 FPVRDVLIALDRHIRETGR-KVYIAYILLRGVNDSTAHAEAVAELLRGRGAWEHLYHVNL 287 Query: 316 IPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 IPFN Y SD I F +K G S +RT G DI AACGQL Sbjct: 288 IPFNSTEVTPDSYRQSDPSRIKAFVRILKSRGISVTVRTQFGSDINAACGQL 339 >gi|34328031|ref|NP_899167.1| florfenicol/chloramphenicol resistance protein [Staphylococcus sciuri] gi|312620947|ref|YP_003927883.1| rRNA methylase [Bacillus sp. BS-02] gi|75466541|sp|Q9FBG4|CFR_STASC RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr; AltName: Full=23S rRNA m8A2503 methyltransferase gi|205829896|sp|A5HBL2|CFR_STAAU RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr; AltName: Full=23S rRNA m8A2503 methyltransferase gi|205829901|sp|A2AXI2|CFR_STAWA RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr; AltName: Full=23S rRNA m8A2503 methyltransferase gi|9909980|emb|CAC04525.1| florfenicol resistance protein [Staphylococcus sciuri] gi|33352201|emb|CAE18142.1| florfenicol/chloramphenicol resistance protein [Staphylococcus sciuri] gi|124001381|emb|CAL64019.1| rRNA methylase [Staphylococcus warneri] gi|145974708|gb|ABQ00063.1| Cfr [Staphylococcus aureus] gi|185178617|gb|ACC77590.1| 23S rRNA methylase [Staphylococcus aureus] gi|307543255|gb|ADN44269.1| rRNA methylase [Bacillus sp. BS-02] gi|308275351|emb|CBN88266.1| rRNA methylase [Staphylococcus aureus] gi|310772090|emb|CBW44219.1| rRNA methylase [Staphylococcus aureus] Length = 349 Score = 297 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 112/376 (29%), Positives = 184/376 (48%), Gaps = 46/376 (12%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MNF K +++E L P R QI I+ + I F+ M + + + Sbjct: 1 MNFNNKT-----KYGKIQEFLRSNNEPD----YRIKQITNAIFKQRISRFEDMKVLPKLL 51 Query: 61 RHLLNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLC 117 R L +F +++ +++ E+ S T K L + +ETV + K+ + C Sbjct: 52 REDLINNFGETVLNIKLLAEQNSEQVT-KVLFE-----VSKNERVETVNMKYKAGWESFC 105 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 +SSQ GC+ C FC TG L +NLT +EI QVL +G Sbjct: 106 ISSQCGCNFGCKFCATGDIGLKKNLTVDEITDQVLYF------------------HLLGH 147 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IG 236 +I +I MGMGE L N V +L +D + S RR+++ST G +P+I ++ +E Sbjct: 148 QIDSISFMGMGEALAN-RQVFDALDSFTDPNLFALSPRRLSISTIGIIPSIKKITQEYPQ 206 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 V L SLH+ ++ R+ L+PIN +YP++ +++ + L++ ++ Y+ML G+NDS Sbjct: 207 VNLTFSLHSPYSEERSKLMPINDRYPIDEVMNILDEHIRLTSR-KVYIAYIMLPGVNDSL 265 Query: 297 RDALNLIKILK-----GIPAKINLIPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSSP 349 A ++ +LK G +NLI +NP Y +++ + F + +K +G Sbjct: 266 EHANEVVSLLKSRYKSGKLYHVNLIRYNPTISAPEMYGEANEGQVEAFYKVLKSAGIHVT 325 Query: 350 IRTPRGLDILAACGQL 365 IR+ G+DI AACGQL Sbjct: 326 IRSQFGIDIDAACGQL 341 >gi|71608924|emb|CAI56203.1| methyltransferase [Staphylococcus aureus] gi|76057931|emb|CAJ30491.1| 23S rRNA methylase [Staphylococcus aureus] Length = 349 Score = 297 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 112/376 (29%), Positives = 185/376 (49%), Gaps = 46/376 (12%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MNF K +++E L P R QI I+ + I F+ M + + + Sbjct: 1 MNFNNKT-----KYGKIQEFLRSNNEPD----YRIKQITNAIFKQRISRFEDMKVLPKLL 51 Query: 61 RHLLNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLC 117 R L +F +++ +++ E+ S T K L + +ETV + K+ + C Sbjct: 52 REDLINNFGETVLNIKLLAEQNSEQVT-KVLFE-----VSKNERVETVNMKYKAGWESFC 105 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 +SSQ GC+ C FC TG L +NLT +EI QVL +G Sbjct: 106 ISSQCGCNFGCKFCATGDIGLKKNLTVDEITDQVLYF------------------HLLGH 147 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IG 236 +I +I MGMGE L N V +L +D + S RR+++ST G +P+I ++ +E Sbjct: 148 QIDSISFMGMGEALAN-RQVFDALDSFTDPNLFALSPRRLSISTIGIIPSIKKITQEYPQ 206 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 V L SLH+ ++ R+ L+PIN +YP++ +++ + L++ ++ +Y+ML G+NDS Sbjct: 207 VNLTFSLHSPYSEERSKLMPINDRYPIDEVMNILDEHIRLTSR-KVYIDYIMLPGVNDSL 265 Query: 297 RDALNLIKILK-----GIPAKINLIPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSSP 349 A ++ +LK G +NLI +NP Y +++ + F + +K +G Sbjct: 266 EHANEVVSLLKSRYKSGKLYHVNLIRYNPTISAPEMYGEANEGQVEAFYKVLKSAGIHVT 325 Query: 350 IRTPRGLDILAACGQL 365 IR+ G+DI AACGQL Sbjct: 326 IRSQFGIDIDAACGQL 341 >gi|292493934|ref|YP_003533077.1| rRNA methylase [Bacillus sp. BS-01] gi|291276223|gb|ADD91311.1| rRNA methylase [Bacillus sp. BS-01] Length = 349 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 112/376 (29%), Positives = 184/376 (48%), Gaps = 46/376 (12%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MNF K +++E L P R QI I+ + I F+ M + + + Sbjct: 1 MNFNNKT-----KYGKIQEFLRSNNEPD----YRIKQITNAIFKQRISRFEDMKVLPKLL 51 Query: 61 RHLLNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLC 117 R L +F +++ +++ E+ S T K L + +ETV + K+ + C Sbjct: 52 REDLINNFGETVLNIKLLAEQNSEQVT-KVLFE-----VSKNERVETVNMKYKAGWESFC 105 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 +SSQ GC+ C FC TG L +NLT +EI QVL +G Sbjct: 106 ISSQCGCNFGCKFCATGDIGLKKNLTVDEITDQVLYF------------------HLLGH 147 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IG 236 +I +I MGMGE L N V +L +D + S RR+++ST G +P+I ++ +E Sbjct: 148 QIDSISFMGMGEALAN-RQVFDALDSFTDPNLFALSPRRLSISTIGIIPSIKKITQEYPQ 206 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 V L SLH+ ++ R+ L+PIN +YP++ +++ + L++ ++ Y+ML G+NDS Sbjct: 207 VNLTFSLHSPYSEERSKLMPINDRYPIDEVMNILDEHIRLTSR-KVYIAYIMLPGVNDSL 265 Query: 297 RDALNLIKILK-----GIPAKINLIPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSSP 349 A ++ +LK G +NLI +NP Y +++ + F + +K +G Sbjct: 266 EHANEVVSLLKSRYKSGKLYHVNLIRYNPTISAPEMYGEANEGHVEAFYKVLKSAGIHVT 325 Query: 350 IRTPRGLDILAACGQL 365 IR+ G+DI AACGQL Sbjct: 326 IRSQFGIDIDAACGQL 341 >gi|187776707|ref|ZP_02993180.1| hypothetical protein CLOSPO_00222 [Clostridium sporogenes ATCC 15579] gi|187775366|gb|EDU39168.1| hypothetical protein CLOSPO_00222 [Clostridium sporogenes ATCC 15579] Length = 344 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 104/342 (30%), Positives = 162/342 (47%), Gaps = 35/342 (10%) Query: 33 MRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI--VDEKISCDGTRKWLL 90 R Q+ K I+ + I +F+ M + + +R L F + V + S +K L Sbjct: 23 YRYEQLTKAIFHQRIDNFEDMHILPKALRMALVNEFGKNVSSVIPVFSQDSKQA-QKLLF 81 Query: 91 RFPARCIGGPVEIETVYIPEKSRG-TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149 +E V + K + C+SSQ GC C FC TG+ RNLTA+EI Sbjct: 82 ELTD-----GERVEAVGLKYKQGWESFCISSQCGCGFGCRFCATGSAGFKRNLTADEITD 136 Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209 Q+L ++++I MGMGE N + + ++ I +D Sbjct: 137 QLLYF------------------YFNDHRLNSISFMGMGEAFANPE-LFDAVKILTDENL 177 Query: 210 LSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 S+RRIT+ST G +P I R+ +E V LA SLH+ R+ L+PIN+++PL ++ Sbjct: 178 FGLSQRRITISTIGIIPRIQRLTKEFPQVNLAFSLHSPFESQRSDLMPINKRFPLNEVMK 237 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-----KINLIPFNPWPG 323 + + RR+ Y+ML+GINDS A ++ +LK + I+LIP+N Sbjct: 238 TLDEHI-IHTGRRVFIAYIMLEGINDSKEHAEAVVGLLKNRGSWEHLYHIDLIPYNSTDK 296 Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + I F +K++G S+ +RT G +I AACGQL Sbjct: 297 TTFKFQSSSAIKQFCNTLKKAGISATVRTQFGSEISAACGQL 338 >gi|307352151|ref|YP_003896025.1| chloramphenicol-florfenicol resistance protein, CFR [Enterococcus faecalis] gi|307155389|gb|ADN34770.1| chloramphenicol-florfenicol resistance protein, CFR [Enterococcus faecalis] Length = 349 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 112/376 (29%), Positives = 184/376 (48%), Gaps = 46/376 (12%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 MNF K +++E L P R QI I+ + I F+ M + + + Sbjct: 1 MNFNNKT-----KYGKIQEFLRSNNEPD----YRIKQITNAIFKQRISRFEDMKVLPKLL 51 Query: 61 RHLLNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLC 117 R L +F +++ +++ E+ S T K L + +ETV + K+ + C Sbjct: 52 REDLINNFGETVLNIKLLAEQNSEQVT-KVLFE-----VSKNKRVETVNMKYKAGWESFC 105 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 +SSQ GC+ C FC TG L +NLT +EI QVL +G Sbjct: 106 ISSQCGCNFGCKFCATGNIGLKKNLTVDEITDQVLYF------------------HLLGH 147 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IG 236 +I +I MGMGE L N V +L +D + S RR+++ST G +P+I ++ +E Sbjct: 148 QIDSISFMGMGEALAN-RQVFDALDSFTDPNLFALSPRRLSISTIGIIPSIKKITQEYPQ 206 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 V L SLH+ ++ R+ L+PIN +YP++ +++ + L++ ++ Y+ML G+NDS Sbjct: 207 VNLTFSLHSPYSEERSKLMPINDRYPIDEVMNILDEHIRLTSR-KVYIAYIMLPGVNDSL 265 Query: 297 RDALNLIKILK-----GIPAKINLIPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSSP 349 A ++ +LK G +NLI +NP Y +++ + F + +K +G Sbjct: 266 EHANEVVSLLKSRYKSGKLYHVNLIRYNPTISAPEMYGEANEGQVEAFYKVLKSAGIHVT 325 Query: 350 IRTPRGLDILAACGQL 365 IR+ G+DI AACGQL Sbjct: 326 IRSQFGIDIDAACGQL 341 >gi|297621026|ref|YP_003709163.1| putative Fe-S-cluster redox enzyme, Cfr family [Waddlia chondrophila WSU 86-1044] gi|297376327|gb|ADI38157.1| putative Fe-S-cluster redox enzyme, Cfr family [Waddlia chondrophila WSU 86-1044] Length = 359 Score = 296 bits (757), Expect = 5e-78, Method: Composition-based stats. Identities = 117/367 (31%), Positives = 185/367 (50%), Gaps = 30/367 (8%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWK-WIYVRGIRDFQGMSDISQEVRHLLN 65 ++ RE +A+ K + +++ W+ + + + + Sbjct: 2 IPILSHTRESYSQAVAKALGKGLQ---HAALLYREWMRTGNVSSKHPAFYNAPLLYEEIL 58 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 Q PEI + D RK L+RF + +E+V IP + +LCVSSQ GC Sbjct: 59 QVTDFSLPEISHQLTDGD-VRKLLIRFDDGNV-----VESVVIPMQFGLSLCVSSQAGCR 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC TG L R+L +EEI+ Q +AR +L I NIV M Sbjct: 113 MGCTFCQTGRIGLKRHLRSEEIVAQGFIARHVLR-----------------LPIRNIVFM 155 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG--VMLAISL 243 GMGEP+ NFD V +++ + SD G++F R +T+ST G V I R E+ V LA+S+ Sbjct: 156 GMGEPMDNFDAVSQAIKVFSDQGGMAFGMRHLTVSTVGRVDGIRRFVSEVNPAVNLAVSI 215 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 +A ++ LR L+P+ RKY L + +A Y R + YV++KG+NDS A L Sbjct: 216 NAPNDALRKTLMPLTRKYSLGTIKEALLDYCS-HPRRSVLIGYVLIKGVNDSLELADELA 274 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +KG+ AK+NLIP+NP Y + + + F+ ++ G S+ +R +G +++AACG Sbjct: 275 AYIKGLRAKVNLIPYNPQESDPYETPESESVNAFAARLRAQGVSTLLRQTKGDEMMAACG 334 Query: 364 QLKSLSK 370 QL ++K Sbjct: 335 QLGGVNK 341 >gi|226950274|ref|YP_002805365.1| florfenicol/chloramphenicol resistance protein [Clostridium botulinum A2 str. Kyoto] gi|226842506|gb|ACO85172.1| florfenicol/chloramphenicol resistance protein [Clostridium botulinum A2 str. Kyoto] Length = 344 Score = 295 bits (756), Expect = 7e-78, Method: Composition-based stats. Identities = 104/358 (29%), Positives = 167/358 (46%), Gaps = 39/358 (10%) Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI- 75 +++ + + +P R Q+ K I+ + I +F M + + +R L F + Sbjct: 11 MKQIVSNLKLPD----YRYEQLIKAIFHQRIDNFDDMHILPKALRMSLVNEFRKNVSSVI 66 Query: 76 -VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLCVSSQVGCSLTCSFCYT 133 V + S +K L IE V + K + C+S Q GC C FC T Sbjct: 67 PVFSQDSKQA-QKLLFELTD-----GERIEAVGLKYKQGWESFCISCQCGCGFGCRFCAT 120 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 G+ RNLTA+EI Q+L ++++I MGMGE N Sbjct: 121 GSVGFKRNLTADEITDQLLYF------------------YFNDHRLNSISFMGMGEAFAN 162 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252 + + ++ I +D S+RRIT+ST G +P I R+ ++ V LA SLH+ R+ Sbjct: 163 PE-LFDAVKILTDQNLFGLSQRRITISTIGIIPGIQRLTQKFPQVNLAFSLHSPFESQRS 221 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA- 311 L+PIN+++PL ++ + + RR+ Y+ML+GINDS A ++ +LK + Sbjct: 222 DLMPINKRFPLNEVMKTLDEHI-IHTGRRVFIAYIMLEGINDSKEHAEAVVGLLKNRGSW 280 Query: 312 ----KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I+LIP+N + I F +K++G S+ +RT G +I AACGQL Sbjct: 281 EHLYHIDLIPYNSTDKTTFKFQSSSAIKQFCSTLKKAGISATVRTQFGSEISAACGQL 338 >gi|168184510|ref|ZP_02619174.1| florfenicol/chloramphenicol resistance protein [Clostridium botulinum Bf] gi|237796302|ref|YP_002863854.1| chloramphenicol/florfenicol resistance protein [Clostridium botulinum Ba4 str. 657] gi|182672475|gb|EDT84436.1| florfenicol/chloramphenicol resistance protein [Clostridium botulinum Bf] gi|229261117|gb|ACQ52150.1| florfenicol/chloramphenicol resistance protein [Clostridium botulinum Ba4 str. 657] Length = 344 Score = 295 bits (756), Expect = 7e-78, Method: Composition-based stats. Identities = 105/358 (29%), Positives = 169/358 (47%), Gaps = 39/358 (10%) Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI- 75 +++ + + +P R Q+ K I+ + I +F M + + +R L F + Sbjct: 11 MKQIVSNLKLPD----YRYKQLIKAIFHQRIDNFDDMHILPKALRMSLVNEFGKNVSSVI 66 Query: 76 -VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLCVSSQVGCSLTCSFCYT 133 V + S +K L+ IE V + K + C+S Q GCS C FC T Sbjct: 67 PVFSQDSKQA-QKLLIELTD-----GERIEAVGLKYKQGWESFCISCQCGCSFGCRFCAT 120 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 G+ RNLTA+EI Q+L ++++I MGMGE N Sbjct: 121 GSVGFKRNLTADEITDQLLYF------------------YFNDHRLNSISFMGMGEAFAN 162 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252 + + ++ I +D S+RRIT+ST G +P I R+ ++ V LA SLH+ R+ Sbjct: 163 PE-LFDAVKILTDQNLFGLSQRRITISTIGIIPGIQRLTQKFPQVNLAFSLHSPFESQRS 221 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA- 311 L+PIN+++PL ++ + + RR+ Y+ML+GINDS A ++ +LK + Sbjct: 222 DLMPINKRFPLNEVMKTLDEHI-IHTGRRVFIAYIMLEGINDSKEHAEAVVGLLKNRGSW 280 Query: 312 ----KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I+LIP+N + I F +K++G S+ +RT G +I AACGQL Sbjct: 281 EHLYHIDLIPYNSTDKTTFKFQSSSAIKQFCSTLKKAGISATVRTQFGSEISAACGQL 338 >gi|299535922|ref|ZP_07049242.1| ribosomal RNA large subunit methyltransferase N [Lysinibacillus fusiformis ZC1] gi|298728674|gb|EFI69229.1| ribosomal RNA large subunit methyltransferase N [Lysinibacillus fusiformis ZC1] Length = 286 Score = 295 bits (756), Expect = 7e-78, Method: Composition-based stats. Identities = 91/272 (33%), Positives = 149/272 (54%), Gaps = 24/272 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 KES+ + +LEE L + G R +QI+ W+Y + ++ F+ MS++S+ +R L Sbjct: 34 KESIYSLQPHQLEEWLTENG----EKPFRAAQIFDWLYNKRVKTFEEMSNLSKGLREKLT 89 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +F++ + ++ S DGT K+L + IETV + + ++CV++QVGC Sbjct: 90 ANFALSTLSTIIKQESKDGTIKFLFQLQD-----GYSIETVLMRHEYGNSVCVTTQVGCR 144 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC + L R+L A EI+ QV+ + L + G ++S+IV+M Sbjct: 145 IGCTFCASTLGGLKRHLLAGEIVEQVVKVQQTLDEL--------------GERVSHIVIM 190 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 G+GEP N+D + L + + GL+ R IT+STSG VP I + +E + + A+SLH Sbjct: 191 GIGEPFDNYDAMMNFLKVINHEKGLNIGARHITVSTSGIVPKIYQFADEQLQINFAVSLH 250 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276 A + + R L+PI R Y LE L+DA R+Y Sbjct: 251 APNQEARQKLMPIARAYKLEELMDAVRYYTKK 282 >gi|46445973|ref|YP_007338.1| hypothetical protein pc0339 [Candidatus Protochlamydia amoebophila UWE25] gi|81627607|sp|Q6MED6|RLMN1_PARUW RecName: Full=Ribosomal RNA large subunit methyltransferase N 1; AltName: Full=23S rRNA m2A2503 methyltransferase 1 gi|46399614|emb|CAF23063.1| hypothetical protein pc0339 [Candidatus Protochlamydia amoebophila UWE25] Length = 358 Score = 295 bits (756), Expect = 8e-78, Method: Composition-based stats. Identities = 115/345 (33%), Positives = 184/345 (53%), Gaps = 29/345 (8%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII-YPEIVDEKISCDG-TRKWLLR 91 +++ + RG + G++ + + LL S+ + + + DG T K+L++ Sbjct: 30 HAKLVYQEWFRRG--NISGLNPAFKNAQALLQNILSLTDFSFLPISQNLTDGQTGKFLIK 87 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 +I++V IP ++ GTLC+SSQ+GC + C+FC TG L+RNLT +EIL Q+ Sbjct: 88 TIDDL-----DIKSVLIPMQAGGTLCISSQIGCQMGCAFCETGRMGLLRNLTTQEILSQL 142 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 +A+ + + NIV MGMGEP N+D V + I +DS G Sbjct: 143 FIAK-----------------FRLHFSVRNIVFMGMGEPFDNYDTVMHAFRILTDSHGFG 185 Query: 212 FSKRRITLSTSGFVPNIARVGEE--IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 RIT+STSG + I R+ +E LA+SL+A +++LRN L+PIN+KYPL+ L A Sbjct: 186 LGNNRITISTSGCLEGIYRLLQETTPLPNLAVSLNAPNDELRNKLMPINKKYPLKELYQA 245 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCS 329 + ++ + + YV++K NDS A L L G+ KINLIP+NP + Sbjct: 246 IYDFCKQTSKQ-VLIAYVLIKEQNDSIEHAKQLTNFLSGLNVKINLIPYNPQSRDRFQSP 304 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPK 374 +Q + F+ ++ G+ + +R +G I+AACGQL +L + K Sbjct: 305 EQSTLENFTSYLREKGFYTLLRQTKGQKIMAACGQLGNLELKRKK 349 >gi|168179276|ref|ZP_02613940.1| florfenicol/chloramphenicol resistance protein [Clostridium botulinum NCTC 2916] gi|182669853|gb|EDT81829.1| florfenicol/chloramphenicol resistance protein [Clostridium botulinum NCTC 2916] Length = 344 Score = 295 bits (755), Expect = 8e-78, Method: Composition-based stats. Identities = 104/358 (29%), Positives = 167/358 (46%), Gaps = 39/358 (10%) Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI- 75 +++ + + +P R Q+ K I+ + I +F M + + +R L F + Sbjct: 11 MKQIVSNLKLPD----YRYEQLIKAIFHQRIDNFDDMHILPKALRMSLVNEFGKNVSSVI 66 Query: 76 -VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLCVSSQVGCSLTCSFCYT 133 V + S +K L IE V + K + C+S Q GC C FC T Sbjct: 67 PVFSQDSKQA-QKLLFELTD-----GERIEAVGLKYKQGWESFCISCQCGCGFGCRFCAT 120 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 G+ RNLTA+EI Q+L ++++I MGMGE N Sbjct: 121 GSVGFKRNLTADEITDQLLYF------------------YFNDHRLNSISFMGMGEAFAN 162 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252 + + ++ I +D S+RRIT+ST G +P I R+ ++ V LA SLH+ R+ Sbjct: 163 PE-LFDAVKILTDQNLFGLSQRRITISTIGIIPGIQRLTQKFPQVNLAFSLHSPFESQRS 221 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA- 311 L+PIN+++PL ++ + + RR+ Y+ML+GINDS A ++ +LK + Sbjct: 222 DLMPINKRFPLNEVMKTLDEHI-IHTGRRVFIAYIMLEGINDSKEHAEAVVGLLKNRGSW 280 Query: 312 ----KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I+LIP+N + I F +K++G S+ +RT G +I AACGQL Sbjct: 281 EHLYHIDLIPYNSTDKTTFKFQSSSAIKQFCSTLKKAGISATVRTQFGSEISAACGQL 338 >gi|170758262|ref|YP_001788180.1| florfenicol/chloramphenicol resistance protein [Clostridium botulinum A3 str. Loch Maree] gi|205829643|sp|B1KZ37|CFR_CLOBM RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr; AltName: Full=23S rRNA m8A2503 methyltransferase gi|169405251|gb|ACA53662.1| florfenicol/chloramphenicol resistance protein [Clostridium botulinum A3 str. Loch Maree] Length = 344 Score = 295 bits (755), Expect = 9e-78, Method: Composition-based stats. Identities = 105/358 (29%), Positives = 168/358 (46%), Gaps = 39/358 (10%) Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI- 75 +++ + + +P R Q+ K I+ + I +F + + + +R L F + Sbjct: 11 MKQMVSNLKLPD----YRYEQLTKAIFHQRIDNFDDIHILPKALRMSLVNEFGKNVSSVI 66 Query: 76 -VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLCVSSQVGCSLTCSFCYT 133 V + S RK L IE V + K + C+SSQ GC C FC T Sbjct: 67 PVFSQDSKQA-RKLLFELTD-----GERIEAVGLKYKQGWESFCISSQCGCGFGCRFCAT 120 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 G+ RNLTA+EI Q+L ++++I MGMGE N Sbjct: 121 GSAGFKRNLTADEITDQLLYF------------------YFNNHRLNSISFMGMGEAFAN 162 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252 + + ++ I +D S+RRIT+ST G +P I R+ ++ V LA SLH+ R+ Sbjct: 163 PE-LFDAVKILTDQNLFGLSQRRITISTIGIIPGIQRLTKKFPQVNLAFSLHSPFESQRS 221 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA- 311 L+PIN+++PL ++ + + RR+ Y+ML+GINDS A ++ +LK + Sbjct: 222 DLMPINKRFPLNEVMKTLDEHI-IHTGRRVFIAYIMLEGINDSKEHAEAVVGLLKNRGSW 280 Query: 312 ----KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I+LIP+N + I F +K++G S+ +RT G +I AACGQL Sbjct: 281 EHLYHIDLIPYNSTDKTTFKFQSSSAIKQFCSTLKKAGISATVRTQFGSEISAACGQL 338 >gi|329930082|ref|ZP_08283701.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF5] gi|328935341|gb|EGG31816.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF5] Length = 346 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 111/376 (29%), Positives = 177/376 (47%), Gaps = 48/376 (12%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M L K E++ + L + P R SQI + I+ I +F+ M+++ + + Sbjct: 1 MKHLSK-------YEKIRKILSALNQPN----YRYSQITESIFKNKIGNFEAMNNLPKPL 49 Query: 61 RHLLNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLC 117 R+ L + +++ E+ S + K L P G IE+V + ++ + C Sbjct: 50 RNELIKELGNNVLSITPKMEQKSNQVS-KILFAVP-----GDEYIESVRLSYQTGWESYC 103 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 +SSQ GC C+FC TGT L RNLT +EI Q+L Sbjct: 104 ISSQCGCGFGCTFCATGTLGLKRNLTTDEITDQLLYF------------------TLNNH 145 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IG 236 + ++ MGMGE L N V +L + +D RRIT+ST G +P + ++ +E Sbjct: 146 PLDSVSFMGMGEALAN-PYVFDALHVLTDPKLFGLGHRRITVSTIGLIPGVKKLTKEFPQ 204 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 + L SLH+ +D R+ L+PIN +PLE ++ + + ++ Y++L+GINDS Sbjct: 205 INLTFSLHSPFHDQRSELMPINNHFPLEEVMTVLDEHIQQTKR-KVYIAYILLRGINDST 263 Query: 297 RDALNLIKILKGI-----PAKINLIPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSSP 349 + A + +L+G +NLIP+N ++ SDQ I F +K G Sbjct: 264 KHAEAVADLLRGRGPWEHLYHVNLIPYNSTDATSQSFVESDQNSINMFLRILKSKGIHVT 323 Query: 350 IRTPRGLDILAACGQL 365 +RT G DI AACGQL Sbjct: 324 VRTQFGSDINAACGQL 339 >gi|328773686|gb|EGF83723.1| hypothetical protein BATDEDRAFT_3639 [Batrachochytrium dendrobatidis JAM81] Length = 368 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 108/376 (28%), Positives = 180/376 (47%), Gaps = 55/376 (14%) Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76 L+EA I +H ++W++ R + F + ++ ++ +L F+ + +++ Sbjct: 9 LKEAFNLHNISPKH----AQKLWRYFIQRNAKSFTDVPELPKQALQILESDFTPMTSKVI 64 Query: 77 DEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKS---------------RGTLCVSS 120 + DG T K L+ IE+V + + R TLCVSS Sbjct: 65 SRTDNADGSTTKLLVELQD-----GQRIESVIMRYEKMTKDMDGNIKYRSNKRATLCVSS 119 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC++ C+FC TGT L+ NL+A EIL Q++ A + I Sbjct: 120 QVGCAMGCTFCATGTMGLLANLSAGEILEQLVHANQV-------------------EHIR 160 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239 N+V MGMGEPL N+ V +++ D+ S RI++ST G VP + + + + L Sbjct: 161 NVVFMGMGEPLDNYPAVLMAVNGMIDTSRFGLSPSRISVSTVGVVPRMRSLVRDMPDIGL 220 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--------ARRITFEYVMLKG 291 A+SLHA + +LR +VP + + +E +++A + N + + EYV++ Sbjct: 221 ALSLHAPTQELRTQIVPTAKAWNIERIMEAADVFIAQQNANVKSHNRRKHVLIEYVLIAD 280 Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWP-GCEYLCSDQKDIVTFSECIKR-SGYSSP 349 INDS A L K+L+G +N+IP+NP +Y Q+ + F + ++R + Sbjct: 281 INDSEVVAHQLGKLLEGRDVLLNVIPYNPTSVPYDYKPPLQETMKVFVDIVRRVYNVHTL 340 Query: 350 IRTPRGLDILAACGQL 365 +R G DI +ACGQL Sbjct: 341 LRQELGQDISSACGQL 356 >gi|322807173|emb|CBZ04747.1| putative florfenicol resistance protein [Clostridium botulinum H04402 065] Length = 344 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 106/358 (29%), Positives = 168/358 (46%), Gaps = 39/358 (10%) Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPE 74 +++ + +P R Q+ K I+ + I +F M + + +R L F ++ Sbjct: 11 MKQIASNLKLPD----YRYEQLTKAIFHQRINNFDDMHILPKTLRIALVNEFGKNVSSVT 66 Query: 75 IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLCVSSQVGCSLTCSFCYT 133 + + S +K L IE V + K + C+SSQ GC C FC T Sbjct: 67 PIFSQDSKQA-QKLLFELTD-----GERIEAVGLKYKQGWESFCISSQCGCGFGCRFCAT 120 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 G+ RNLTA+EI Q+L ++++I MGMGE N Sbjct: 121 GSAGFKRNLTADEITDQLLYF------------------YFNNHRLNSISFMGMGEAFAN 162 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRN 252 + + ++ I +D S+RRIT+ST G +P I R+ +E V LA SLH+ R+ Sbjct: 163 PE-LFDAVKILTDQNLFGLSQRRITISTIGIIPGIQRLTKEFSQVNLAFSLHSPFESQRS 221 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA- 311 L+PIN+++PL ++ + + RR+ Y+ML+GINDS A +I +LK + Sbjct: 222 DLMPINKRFPLNEVMKTLDEHI-IHTGRRVFIAYIMLEGINDSKEHAEAVIGLLKNRGSW 280 Query: 312 ----KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I+LIP+N + I F +K++G S+ +RT G +I AACGQL Sbjct: 281 EHLYHIDLIPYNSTDKTTFKFQSSSAIKQFCSTLKKAGISATVRTQFGSEISAACGQL 338 >gi|170754770|ref|YP_001782469.1| florfenicol/chloramphenicol resistance protein [Clostridium botulinum B1 str. Okra] gi|205829627|sp|B1IL14|CFR_CLOBK RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr; AltName: Full=23S rRNA m8A2503 methyltransferase gi|169119982|gb|ACA43818.1| florfenicol/chloramphenicol resistance protein [Clostridium botulinum B1 str. Okra] Length = 344 Score = 292 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 104/358 (29%), Positives = 168/358 (46%), Gaps = 39/358 (10%) Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI- 75 +++ + + +P R Q+ K I+ + I +F + + + +R L F + Sbjct: 11 MKQMVSNLKLPD----YRYEQLTKAIFHQRIDNFDDIHILPKALRMSLVNEFGKNVSSVI 66 Query: 76 -VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLCVSSQVGCSLTCSFCYT 133 V + S +K L IE V + K + C+SSQ GC C FC T Sbjct: 67 PVFSQDSKQA-QKLLFELTD-----GERIEAVGLKYKQGWESFCISSQCGCGFGCRFCAT 120 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 G+ RNLTA+EI Q+L ++++I MGMGE N Sbjct: 121 GSAGFKRNLTADEITDQLLYF------------------YFNNHRLNSISFMGMGEAFAN 162 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252 + + ++ I +D S+RRIT+ST G +P I R+ ++ V LA SLH+ R+ Sbjct: 163 PE-LFDAVKILTDQNLFGLSQRRITISTIGIIPGIQRLTKKFPQVNLAFSLHSPFESRRS 221 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA- 311 L+PIN+++PL ++ + + RR+ Y+ML+GINDS A ++ +LK + Sbjct: 222 DLMPINKRFPLNEVMKTLDEHI-IHTGRRVFIAYIMLEGINDSKEHAEAVVGLLKNRGSW 280 Query: 312 ----KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I+LIP+N + I F +K++G S+ +RT G +I AACGQL Sbjct: 281 EHLYHIDLIPYNSTDKTTFKFQSSSAIKQFCSTLKKAGISATVRTQFGSEISAACGQL 338 >gi|160880358|ref|YP_001559326.1| radical SAM protein [Clostridium phytofermentans ISDg] gi|205829630|sp|A9KK15|CFR_CLOPH RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr; AltName: Full=23S rRNA m8A2503 methyltransferase gi|160429024|gb|ABX42587.1| radical SAM enzyme, Cfr family [Clostridium phytofermentans ISDg] Length = 344 Score = 292 bits (748), Expect = 6e-77, Method: Composition-based stats. Identities = 116/365 (31%), Positives = 177/365 (48%), Gaps = 45/365 (12%) Query: 14 REELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SII 71 E +++ + + +P R QI K I+ + F+ MS + E++ L F S+ Sbjct: 6 YETMKQLIADMKLPD----YRYEQIIKAIFSQHTSTFEKMSTLPLELKKSLINTFGPSVC 61 Query: 72 YPEIVDEKIS--CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLCVSSQVGCSLTC 128 V + S D K L P +ETV + K + C+SSQ GC C Sbjct: 62 CTVPVACQTSGQAD---KILFSLPD-----GNRVETVNLHYKKGWESFCISSQCGCGFGC 113 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TGT RN+TA+EI Q+L G K+++I MGMG Sbjct: 114 QFCATGTLGHKRNMTADEITDQLLYF------------------HLNGHKLNSISFMGMG 155 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVS 247 EPL N N+ +L+I +DS S+RRIT+ST G +P I R+ E + LA SLH+ Sbjct: 156 EPLAN-PNLFDALNILNDSSLFGLSQRRITISTIGIIPGIKRLTHEFPQINLAYSLHSPF 214 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 + R+ L+P+NR +PL +++A ++ + R+ Y+ML G+NDS A L+++L+ Sbjct: 215 ENQRSELMPVNRSFPLHEVMNALDNHIRHTGR-RLFLAYIMLNGVNDSVDHAKALVELLQ 273 Query: 308 GI-----PAKINLIPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 ++LIP+N + SD+ + F + + +G S RT G DI A Sbjct: 274 DRGPWAHLYHVDLIPYNATDKTPRKFASSDKITMKRFRDILHANGISVATRTQFGSDISA 333 Query: 361 ACGQL 365 ACGQL Sbjct: 334 ACGQL 338 >gi|261407206|ref|YP_003243447.1| chloramphenicol/florfenicol resistance protein [Paenibacillus sp. Y412MC10] gi|261283669|gb|ACX65640.1| radical SAM enzyme, Cfr family [Paenibacillus sp. Y412MC10] Length = 346 Score = 292 bits (747), Expect = 7e-77, Method: Composition-based stats. Identities = 111/376 (29%), Positives = 178/376 (47%), Gaps = 48/376 (12%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60 M +L K E++ + L + P R SQI + I+ I +F+ M+++ + V Sbjct: 1 MKYLSK-------YEKIRKILSALNQPN----YRYSQITEAIFKNKIGNFEAMNNLPKPV 49 Query: 61 RHLLNQHF--SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLC 117 R+ L + +++ E+ S + K L I G IE+V + ++ + C Sbjct: 50 RNELIKELGNNVLSITPKMEQKSNQVS-KILF-----AIPGDEYIESVRLSYQTGWESYC 103 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 +SSQ GC C+FC TGT L RNLT +EI Q+L Sbjct: 104 ISSQCGCGFGCTFCATGTLGLKRNLTTDEITDQLLYF------------------TLNNH 145 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IG 236 + ++ MGMGE L N V +L + +D RRIT+ST G +P + ++ +E Sbjct: 146 PLDSVSFMGMGEALAN-PYVFDALHLLTDPKLFGLGHRRITVSTIGLLPGVKKLTKEFPQ 204 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 + L SLH+ +D R+ L+PIN +PLE ++ + + ++ Y++L+GINDS Sbjct: 205 INLTFSLHSPFHDQRSELMPINNHFPLEEVMTVLDEHIQQTKR-KVYIAYILLRGINDST 263 Query: 297 RDALNLIKILKGIPA-----KINLIPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSSP 349 + A + +L+ + +NLIP+N ++ SDQ I F +K G Sbjct: 264 KHAKAVADLLRERGSWEHLYHVNLIPYNSTDATSQSFVESDQNSINMFLRILKSKGIHVT 323 Query: 350 IRTPRGLDILAACGQL 365 +RT G DI AACGQL Sbjct: 324 VRTQFGSDINAACGQL 339 >gi|145344512|ref|XP_001416775.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144577001|gb|ABO95068.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 298 Score = 292 bits (747), Expect = 8e-77, Method: Composition-based stats. Identities = 98/321 (30%), Positives = 145/321 (45%), Gaps = 30/321 (9%) Query: 56 ISQEVRHLLNQHFSIIYPEIVDEKISCDGTR-KWLLRFPARCIGGPVEIETVYIPE-KSR 113 + + V L +F + ++ E S DGT K ++ G +E + K R Sbjct: 1 LPRAVVDALRANFVLYTTKVRHESRSGDGTTTKMIVEL-----AGGDVVEACVMRHAKGR 55 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 TLCVSSQVGC + C+FC TGT + NL+A EI Q+ A Sbjct: 56 TTLCVSSQVGCKMGCTFCATGTLGELGNLSAGEICEQLAHASR----------------- 98 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233 G + N+V MGMGEPL N+ NV ++ + G S +IT+ST G +P + + Sbjct: 99 --GDAVRNVVFMGMGEPLNNYRNVIDAIEAMTSDKGFGLSPAKITVSTVGVIPRMRTLRR 156 Query: 234 E-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 + G LA+SLHA + LR +VP Y LE L+ + + EY +L G+ Sbjct: 157 DAPGTRLALSLHAPNQALRQKIVPTATAYKLEDLMATLDEHMASGPKMKTMIEYCVLGGV 216 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIK--RSGYSSP 349 ND A L +L+G +NLIP NP ++ ++ + E + + Sbjct: 217 NDDEACARELGALLRGKEVIVNLIPLNPTDTPAGHVPPTREAVQKMLEILTSPEFDLFTT 276 Query: 350 IRTPRGLDILAACGQLKSLSK 370 +R G DI ACGQL + Sbjct: 277 VRHEMGQDIAGACGQLALKTP 297 >gi|153939955|ref|YP_001392137.1| florfenicol/chloramphenicol resistance protein [Clostridium botulinum F str. Langeland] gi|205829642|sp|A7GH77|CFR_CLOBL RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr; AltName: Full=23S rRNA m8A2503 methyltransferase gi|152935851|gb|ABS41349.1| florfenicol/chloramphenicol resistance protein [Clostridium botulinum F str. Langeland] gi|295320142|gb|ADG00520.1| florfenicol/chloramphenicol resistance protein [Clostridium botulinum F str. 230613] Length = 344 Score = 291 bits (746), Expect = 9e-77, Method: Composition-based stats. Identities = 104/358 (29%), Positives = 167/358 (46%), Gaps = 39/358 (10%) Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI- 75 +++ + + +P R Q+ K I+ + I +F M + + +R L F + Sbjct: 11 MKQIVSNLKLPD----YRYEQLTKAIFHQRIDNFDDMHILPKVLRMSLVNEFGKNVSSVI 66 Query: 76 -VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLCVSSQVGCSLTCSFCYT 133 V + S +K L IE V + K + C+SSQ GC C FC T Sbjct: 67 PVFSQDSKQA-QKLLFELTD-----GERIEAVGLKYKQGWESFCISSQCGCGFGCRFCAT 120 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 G+ RNLTA+EI Q+L ++++I MGMGE N Sbjct: 121 GSAGFKRNLTADEITDQLLYF------------------YFNDHRLNSISFMGMGEAFAN 162 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252 + + ++ I +D S+RRIT+ST G +P I + ++ V LA SLH+ R+ Sbjct: 163 PE-LFDAVKILTDQNLFGLSQRRITISTIGIIPGIQSLTQKFPQVNLAFSLHSPFESQRS 221 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA- 311 L+PIN+++PL ++ + + RR+ Y+ML+GINDS A ++ +LK + Sbjct: 222 DLMPINKRFPLNQVMKTLDEHI-IHTGRRVFIAYIMLEGINDSKEHAEAVVGLLKNRGSW 280 Query: 312 ----KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I+LIP+N + I F +K++G S+ +RT G +I AACGQL Sbjct: 281 EHLYHIDLIPYNSTDKTTFKFQSSNAIKQFCSTLKKAGISATVRTQFGSEISAACGQL 338 >gi|330894491|gb|EGH27152.1| radical SAM protein [Pseudomonas syringae pv. mori str. 301020] Length = 249 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 112/238 (47%), Positives = 146/238 (61%), Gaps = 12/238 (5%) Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 LTA E++ QV +A G P D R I+N+VMMGMGEPL NFDNV ++ Sbjct: 1 LTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMMGMGEPLLNFDNVIAAM 50 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKY 261 + D +G SKRR+TLSTSG VP I + + I V LA+SLHA ++ LRN LVPIN+KY Sbjct: 51 HLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKKY 110 Query: 262 PLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 PL+ML+D+CR Y +R+ T EY MLK IND A+ +I++LK P KINLIPFNP Sbjct: 111 PLQMLLDSCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKDTPCKINLIPFNP 170 Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL-KSLSKRIPKVPR 377 +P Y I F + + ++GY+ +RT RG DI AACGQL + R + R Sbjct: 171 FPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQLVGQVMDRTRRSER 228 >gi|148380815|ref|YP_001255356.1| florfenicol/chloramphenicol resistance protein [Clostridium botulinum A str. ATCC 3502] gi|153933477|ref|YP_001385100.1| florfenicol/chloramphenicol resistance protein [Clostridium botulinum A str. ATCC 19397] gi|153935966|ref|YP_001388569.1| florfenicol/chloramphenicol resistance protein [Clostridium botulinum A str. Hall] gi|205829639|sp|A7FX96|CFR_CLOB1 RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr; AltName: Full=23S rRNA m8A2503 methyltransferase gi|205829640|sp|A5I5U3|CFR_CLOBH RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr; AltName: Full=23S rRNA m8A2503 methyltransferase gi|148290299|emb|CAL84423.1| putative florfenicol resistance protein [Clostridium botulinum A str. ATCC 3502] gi|152929521|gb|ABS35021.1| florfenicol/chloramphenicol resistance protein [Clostridium botulinum A str. ATCC 19397] gi|152931880|gb|ABS37379.1| florfenicol/chloramphenicol resistance protein [Clostridium botulinum A str. Hall] Length = 344 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 105/358 (29%), Positives = 168/358 (46%), Gaps = 39/358 (10%) Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPE 74 +++ + +P R Q+ K I+ + I +F M + + +R L F ++ Sbjct: 11 MKQIASNLKLPD----YRYEQLTKAIFHQRIDNFHDMHILPKALRIALVNEFGKNVSSVT 66 Query: 75 IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLCVSSQVGCSLTCSFCYT 133 + + S +K L IE V + K + C+SSQ GCS C FC T Sbjct: 67 PIFSQDSKQA-QKLLFELTD-----GERIEAVGLKYKQGWESFCISSQCGCSFGCRFCAT 120 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 G+ RNLTA+EI Q+L ++++I MGMGE N Sbjct: 121 GSAGFKRNLTADEITDQLLYF------------------YFNDHRLNSISFMGMGEAFAN 162 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252 + + ++ I +D S+RRIT+ST G +P I R+ +E V LA SLH+ R+ Sbjct: 163 PE-LFDAVKILTDQNLFGLSQRRITISTIGIIPGIQRLTKEFPQVNLAFSLHSPFESQRS 221 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA- 311 L+PIN+++PL ++ + + RR+ Y+ML+GINDS A +I +L+ + Sbjct: 222 DLMPINKRFPLNEVMKTLDEHI-IHTGRRVFIAYIMLEGINDSKEHAEAIIGLLRNRGSW 280 Query: 312 ----KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I+LIP+N + I F +K++ S+ +RT G +I AACGQL Sbjct: 281 EHLYHIDLIPYNSTDKTTFKFQSSSAIKQFCSTLKKASISATVRTQFGSEISAACGQL 338 >gi|307103703|gb|EFN51961.1| hypothetical protein CHLNCDRAFT_27272 [Chlorella variabilis] Length = 384 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 102/368 (27%), Positives = 173/368 (47%), Gaps = 69/368 (18%) Query: 20 ALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEK 79 A IG +H+ +++ + + + D + R L+ F + ++ + Sbjct: 21 AFEAIGANPKHIP----RLYNHMIRNPGGGWADLPDFPKAARAALDAGFVLHTTRLLTVQ 76 Query: 80 ISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKS----------------RGTLCVSSQV 122 S DG T K L++ +++E V + + R TLCVSS+V Sbjct: 77 RSSDGETTKLLVQLQD-----GLQVEAVVMQYDNTGGWVDGWVAAMEGGKRTTLCVSSEV 131 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC++ C+FC TGT L +LTA EI+ Q++ A S+ +I NI Sbjct: 132 GCAMGCTFCATGTMGLSADLTAGEIVEQLVHASSVS-------------------RIQNI 172 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAI 241 V MGMGEPL N++ V+ ++ + +D + +R++T+ST G +P + ++ +++ V LA+ Sbjct: 173 VFMGMGEPLNNYEAVRTAVRLMTDPSSFALRRRKVTVSTVGVIPRMLQMADDMPGVSLAL 232 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK-GINDSPRDAL 300 SLHA + +LR + Y + +R+ EYVML IN + A Sbjct: 233 SLHAPTQELRQTI------------------YLERT-GQRVFVEYVMLGPDINCTQAHAH 273 Query: 301 NLIKILKGIPAKINLIPFNPW--PGCEYLCSDQKDIVTFSECIK-RSGYSSPIRTPRGLD 357 L ++L+G +NLIP+NP P + ++ F ++ + G + IR +G D Sbjct: 274 QLGRLLQGRNVLVNLIPWNPILSPSITFAAPEEGATAAFHSILRYQYGVNCTIRAEKGQD 333 Query: 358 ILAACGQL 365 I ACGQL Sbjct: 334 ISGACGQL 341 >gi|84997417|ref|XP_953430.1| hypothetical protein [Theileria annulata strain Ankara] gi|65304426|emb|CAI76805.1| hypothetical protein, conserved [Theileria annulata] Length = 399 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 117/375 (31%), Positives = 170/375 (45%), Gaps = 55/375 (14%) Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76 + + L +PQ R SQI+ IY +F M + + +R L+ +F + Sbjct: 10 IAKYLKDNSVPQ----YRLSQIFNSIYRNKTPNFLSMYHLPKILRSGLHDNFEGSLLSLN 65 Query: 77 DEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT 135 S D +K L + IE V + + +LC+S+QVGCS CSFC TG Sbjct: 66 PVSESNSDRAKKVLFQNSD-----GSRIEAVLLHFNTHKSLCISAQVGCSYACSFCATGK 120 Query: 136 QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195 L RNLT +EI QVL + L G KI +I MGMGEPL N Sbjct: 121 IGLKRNLTVDEITDQVLYFQQL------------------GHKIDSISFMGMGEPLSN-P 161 Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDLRNIL 254 NV KS++I +D + S RRI +ST G +P I ++ +E V LA SLH+ + RN + Sbjct: 162 NVFKSINILTDKRYFALSPRRINVSTVGILPGIKKLNKEYPYVNLAYSLHSPFTEERNEM 221 Query: 255 VPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP---- 310 VP+N YP + + RI Y+++K ND+ LI I+KG P Sbjct: 222 VPVNLLYPFQEAYPLMDERIRQTGR-RIWISYILIKDKNDTKEHVEELINIIKGRPKEVQ 280 Query: 311 --AKINLIPFNPWPG------------------CEYLCSDQKDIVTFSECIKRSGYSSPI 350 +NLIP+N +Y ++ + F + ++++G S Sbjct: 281 YLYHVNLIPYNIGMPQILVLTHQTTFLCLVKSIDKYESTEHDQSLKFEKYLRKNGISCSY 340 Query: 351 RTPRGLDILAACGQL 365 R G +I AACGQL Sbjct: 341 RNYFGRNIDAACGQL 355 >gi|298708530|emb|CBJ49163.1| conserved unknown protein [Ectocarpus siliculosus] Length = 425 Score = 289 bits (740), Expect = 6e-76, Method: Composition-based stats. Identities = 116/381 (30%), Positives = 187/381 (49%), Gaps = 33/381 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDF-QGMSDISQEVRHLLNQ 66 L+ + +EL + L G R +W + G+ F ++ + +L Sbjct: 63 DLLSLNFDELSQILGGSG--------RAKMVWSAL-SAGVDPFGDAAEFLTDKTAAVLKD 113 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE--KSRGTLCVSSQVGC 124 + ++V E +S GTRK L++ +E+ETV IP+ SR T+CVSSQ+GC Sbjct: 114 TVERLPWQVVRESVSSCGTRKLLVQLED-----GLEVETVVIPDLSGSRSTVCVSSQIGC 168 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG LVRNLTA EIL QV AR + + ++N V Sbjct: 169 AKNCQFCMTGKMGLVRNLTAGEILGQVFFARETVREHGMP-------------PLTNAVY 215 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEPL N V +SL + + + +K +I++ST G P R + + LA S+H Sbjct: 216 MGMGEPLDNPGAVTQSLQVLTHPFAFAMAKSKISVSTVGPSPAAIRRMKGMPSRLAWSVH 275 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++D+R +LVP + + L DA + E V+++G+NDSP A L Sbjct: 276 AATDDVRRLLVPTTV-HSMAELRDAFAEVLQSRRREHLFVEVVLIEGMNDSPELARALAS 334 Query: 305 ILKGIPAK--INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +L+ +P + INL+P+N + S ++ + F + + G+ + IRT RG + +AC Sbjct: 335 LLRPLPIRAGINLLPYNDTGHPFFRASPKESVEEFQRVLTQEGFVATIRTARGDEESSAC 394 Query: 363 GQLKSLSKRIPKVPRQEMQIT 383 GQL + + + ++ + T Sbjct: 395 GQLATTANNERALKQRHRRST 415 >gi|195953765|ref|YP_002122055.1| radical SAM enzyme, Cfr family [Hydrogenobaculum sp. Y04AAS1] gi|195933377|gb|ACG58077.1| radical SAM enzyme, Cfr family [Hydrogenobaculum sp. Y04AAS1] Length = 340 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 122/354 (34%), Positives = 181/354 (51%), Gaps = 35/354 (9%) Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76 LE+ + + R SQI W + + I D + M+DI + +R L F ++ + Sbjct: 5 LEDYF-NLEQKLNLEKYRISQIKSWAFKKKITDIELMTDIPKSLRQELKIDFHVLSLDSF 63 Query: 77 DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136 E D T K++ + +E+V I EK TLC+S+Q+GC++ C FC + Sbjct: 64 LE--GEDST-KFVFKTKDGYF-----VESVLIKEKDHYTLCISTQIGCAVGCKFCVSTIG 115 Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196 L+RNL+ EI+ Q L F I NIV MGMGEPL NF+N Sbjct: 116 GLLRNLSFSEIVDQYFYISILRNTF-----------------IRNIVFMGMGEPLANFEN 158 Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI---GVMLAISLHAVSNDLRNI 253 +KK+ I SKR IT+STS + I ++ E+ + LAISL+A ++ R Sbjct: 159 LKKASFIFLKE--FELSKRHITISTSAYTNYIKKLKEDSFLNKLNLAISLNASDDETRKA 216 Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK- 312 L+P N L+ L + + YP L RRIT EYV++K IN S +DA NL+ +LK + K Sbjct: 217 LMP-NVIGSLKELFEILKTYP-LEPRRRITIEYVLIKDINSSLKDAKNLVNLLKNLKHKT 274 Query: 313 -INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 +NLIP+N P + + DI F + + ++ S IR +GL++ AACG L Sbjct: 275 KVNLIPYNENPMLSFERPVESDIYRFQQELLKNDISCTIRWSKGLELAAACGHL 328 >gi|154685028|ref|YP_001420189.1| florfenicol/chloramphenicol resistance like protein [Bacillus amyloliquefaciens FZB42] gi|205829624|sp|A7Z1T2|CFR_BACA2 RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr; AltName: Full=23S rRNA m8A2503 methyltransferase gi|154350879|gb|ABS72958.1| florfenicol/chloramphenicol resistance like protein [Bacillus amyloliquefaciens FZB42] Length = 349 Score = 286 bits (732), Expect = 5e-75, Method: Composition-based stats. Identities = 108/368 (29%), Positives = 181/368 (49%), Gaps = 41/368 (11%) Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPE 74 ++E L + P R +QI ++ I F ++ + + +R LL + F SI+ Sbjct: 10 IQEFLKQNKFPD----FRMNQIKNAVFQGRINHFNEITVLPKSLRKLLIEEFGESILNIA 65 Query: 75 IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLCVSSQVGCSLTCSFCYT 133 + + S T K L I G +IETV + K+ + C+SSQ GC C FC T Sbjct: 66 PLKVQHSEQVT-KVLFE-----ISGDEKIETVNMKYKAGWESFCISSQCGCHFGCKFCAT 119 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 G L RNLT++E+ Q+L G I +I MGMGE L N Sbjct: 120 GDIGLKRNLTSDEMTDQILYF------------------HLKGHSIDSISFMGMGEALAN 161 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRN 252 V +L + ++ + S RR+++ST G +P I ++ ++ V L SLH+ N+ R+ Sbjct: 162 VQ-VFDALHVLTNPELFALSPRRLSISTIGIIPGIKKITQDYPQVNLTFSLHSPFNEQRS 220 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK----- 307 L+PIN +YPL ++D + +++ ++ Y+ML G+NDS A ++ +L+ Sbjct: 221 KLMPINERYPLLEVMDTLDEHIRVTSR-KVYIAYIMLPGVNDSIDHANEVVNLLRSRYKR 279 Query: 308 GIPAKINLIPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 G +N+I +NP + ++K +V F + +K +G + +R+ G+DI AACGQL Sbjct: 280 GNLFHVNIIRYNPTVSSPMRFEEVNEKQVVNFYKKLKSAGINVTVRSQFGIDIDAACGQL 339 Query: 366 KSLSKRIP 373 ++ Sbjct: 340 YGNYQKNK 347 >gi|294461088|gb|ADE76111.1| unknown [Picea sitchensis] Length = 384 Score = 286 bits (731), Expect = 6e-75, Method: Composition-based stats. Identities = 109/367 (29%), Positives = 167/367 (45%), Gaps = 48/367 (13%) Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76 L K GI R + + IWK++ + + + +S +L F + + Sbjct: 15 LRNEFKKRGINIRCIPV----IWKYLLLNENAEVFEVPGLSNAAYDVLRSKFIAMTSTVK 70 Query: 77 DEKISCD-GTRKWLLRFPARCIGGPVEIETVYI--------------PEKSRGTLCVSSQ 121 S D T K L++ IETV + P R TLCVSSQ Sbjct: 71 ATVKSADQSTTKLLIQLQ-----NGSFIETVIMSYDTRLGTYAGSPRPGGPRATLCVSSQ 125 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC + C+FC TG+ NL+ EI+ Q++ A + +I N Sbjct: 126 VGCKMGCTFCATGSMGFKSNLSVGEIVEQLVHAARIS-------------------QIRN 166 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLA 240 +V MGMGEPL N+ +V +++ + R IT+S G + I + ++ V LA Sbjct: 167 VVFMGMGEPLNNYKSVVEAVRSMI-GHCFQLAPRHITISAVGVIHCINNLKYDLPNVNLA 225 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA ++R ++P R +PL L+DA Y S +I EY+ML GIND + A Sbjct: 226 VSLHAPLQEIRCQIMPAARAFPLGKLMDALHAYQEHSKR-KIFIEYIMLDGINDQEQQAH 284 Query: 301 NLIKILKGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLDI 358 L K+L+ +NLI FNP +Y S ++++ F + ++ + +R G DI Sbjct: 285 LLGKLLEEYEVVVNLISFNPIGSISKYRTSKKENVELFQKILRGVYNIRTTVRQEMGQDI 344 Query: 359 LAACGQL 365 ACGQL Sbjct: 345 SGACGQL 351 >gi|162449851|ref|YP_001612218.1| hypothetical protein sce1580 [Sorangium cellulosum 'So ce 56'] gi|205829637|sp|A9FD89|Y1580_SORC5 RecName: Full=Probable RNA methyltransferase sce1580 gi|161160433|emb|CAN91738.1| hypothetical protein sce1580 [Sorangium cellulosum 'So ce 56'] Length = 398 Score = 285 bits (730), Expect = 7e-75, Method: Composition-based stats. Identities = 101/298 (33%), Positives = 149/298 (50%), Gaps = 20/298 (6%) Query: 73 PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132 EI + + D T + +LR G IE+V IP +R TLCVSSQVGC+ CSFC Sbjct: 114 LEIAERAPAQDDTLRLVLR-----AGDGALIESVLIPGPARTTLCVSSQVGCARACSFCE 168 Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192 TG L R L A EI+ QV +AR+L + G + N+V MGMGEP Sbjct: 169 TGRLGLERQLAAGEIVDQVRIARALAAE-------------RGGAPLRNLVFMGMGEPFD 215 Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRN 252 N V K++ + +D F+ +T+ST G I + LA+SL+A + R Sbjct: 216 NLGEVLKAIRLLTDPRAFRFAPSHVTVSTVGVADKIEPFFRDARAELAVSLNAPDDARRQ 275 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312 ++P+N ++ + L +A L RR+ FEYV+ ND+P DA L + G+ + Sbjct: 276 AIMPVNARFSMAALKEAIAR--ALPPGRRVLFEYVLFDRFNDAPEDADLLAAYVAGLRCR 333 Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 +N+IP NP P + F + G ++ +R PRG D+ ACGQL +++ Sbjct: 334 VNVIPCNPGPDPALRPPSAARLDAFVARLSGHGVTTLVRRPRGRDVGGACGQLAGMAR 391 >gi|224367133|ref|YP_002601296.1| hypothetical protein HRM2_00090 [Desulfobacterium autotrophicum HRM2] gi|223689849|gb|ACN13132.1| conserved hypothetical protein [Desulfobacterium autotrophicum HRM2] Length = 342 Score = 285 bits (730), Expect = 8e-75, Method: Composition-based stats. Identities = 120/368 (32%), Positives = 187/368 (50%), Gaps = 33/368 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDI--SQEVRHLLN 65 +L+ M +E+ + L G + + + + RG +F + SQ + L Sbjct: 2 NLLEMTFKEVSQLLY-NGFGRGD--YHAGALLREVIKRGNHNFSTAPEFERSQGMSLALV 58 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + +VD ++ D T K++ R C IE+V IP K TLCVS+Q GC Sbjct: 59 SDYELPDFTVVD-QMEEDNTVKFVTRLHDGC-----SIESVIIPMKQYNTLCVSTQAGCR 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC T RNL EI Q+ AR ++G+KISNIV M Sbjct: 113 MGCRFCETARSGFKRNLQVHEITGQLFSAR-----------------NTLGKKISNIVFM 155 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG--EEIGVMLAISL 243 GMGEP NFDN+ +S+ + +D G + R +T+ST G VP I + + LA+S+ Sbjct: 156 GMGEPFDNFDNLVRSIRVFNDQKGFDVAFRHMTVSTCGLVPGIRALAGLGLTQLSLAVSV 215 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ +++R++L+P+NR+YPL +L A YP L R I EYV++KG+NDS A L+ Sbjct: 216 HSAIDEVRSVLMPVNRRYPLNVLRAALADYP-LHKRRYILVEYVLIKGVNDSQEAAAALV 274 Query: 304 KILKGIPAKINLIPFNP--WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 + L + ++NLI +NP P E+ D + F+ ++ SG R +G ++A Sbjct: 275 QYLVPLKVRVNLIAYNPGRDPDPEFQGVDDCSMNQFASWLEDSGLFVIKRWSKGQKLMAG 334 Query: 362 CGQLKSLS 369 CGQL + + Sbjct: 335 CGQLSTRT 342 >gi|163816252|ref|ZP_02207619.1| hypothetical protein COPEUT_02440 [Coprococcus eutactus ATCC 27759] gi|166032398|ref|ZP_02235227.1| hypothetical protein DORFOR_02101 [Dorea formicigenerans ATCC 27755] gi|167747584|ref|ZP_02419711.1| hypothetical protein ANACAC_02305 [Anaerostipes caccae DSM 14662] gi|167771778|ref|ZP_02443831.1| hypothetical protein ANACOL_03150 [Anaerotruncus colihominis DSM 17241] gi|210615433|ref|ZP_03290560.1| hypothetical protein CLONEX_02776 [Clostridium nexile DSM 1787] gi|227498634|ref|ZP_03928778.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|283796286|ref|ZP_06345439.1| radical SAM enzyme, Cfr family [Clostridium sp. M62/1] gi|331088114|ref|ZP_08337035.1| cfr family radical SAM enzyme [Lachnospiraceae bacterium 3_1_46FAA] gi|158448447|gb|EDP25442.1| hypothetical protein COPEUT_02440 [Coprococcus eutactus ATCC 27759] gi|166028121|gb|EDR46878.1| hypothetical protein DORFOR_02101 [Dorea formicigenerans ATCC 27755] gi|167652946|gb|EDR97075.1| hypothetical protein ANACAC_02305 [Anaerostipes caccae DSM 14662] gi|167666418|gb|EDS10548.1| hypothetical protein ANACOL_03150 [Anaerotruncus colihominis DSM 17241] gi|210150282|gb|EEA81291.1| hypothetical protein CLONEX_02776 [Clostridium nexile DSM 1787] gi|226904090|gb|EEH90008.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|291076221|gb|EFE13585.1| radical SAM enzyme, Cfr family [Clostridium sp. M62/1] gi|291543137|emb|CBL16247.1| radical SAM enzyme, Cfr family [Ruminococcus bromii L2-63] gi|330409070|gb|EGG88529.1| cfr family radical SAM enzyme [Lachnospiraceae bacterium 3_1_46FAA] Length = 329 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 109/369 (29%), Positives = 171/369 (46%), Gaps = 57/369 (15%) Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69 G +E+ E + + R ++ +Y + ++ S Sbjct: 17 YGFTYKEMSEVI-------GEDKARA--LYTELYKQPFH----------------KENLS 51 Query: 70 IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129 I ++ S D T K++ IETV+I + GT+CVS+QVGCS+ C Sbjct: 52 ISTKKVYK---SSD-TEKYVYELKDNRY-----IETVFIKRRDGGTVCVSTQVGCSVGCI 102 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 FC +G VRNLT EI+ QV+L R K++ IV MGMGE Sbjct: 103 FCESGRNGFVRNLTPSEIVQQVVLIRQ---------------------KVNRIVFMGMGE 141 Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248 PL N+DN+ ++ I D GL+F IT+ST G V + ++ EE + + L ISLHA + Sbjct: 142 PLFNYDNLIAAIHILRDRNGLNFPTDGITVSTVGPVNQLKKLREEHLKIQLTISLHAATQ 201 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 RN ++P Y +E ++ Y N ++ F Y++L GIND D L K KG Sbjct: 202 AARNCIIPHMHMYAIEDVVKQALSYSQRHNR-KVVFAYLLLPGINDRSSDIRQLAKWFKG 260 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 IN++ +NP + ++++V F ++++G +R G +I AACGQL + Sbjct: 261 KNVMINVLQYNPTSNSKIRAPQKQEMVAFKHQLEQTGLEVTMRVSHGREIKAACGQLANT 320 Query: 369 SKRIPKVPR 377 + K + Sbjct: 321 YNKAKKQQK 329 >gi|254976991|ref|ZP_05273463.1| hypothetical protein CdifQC_16843 [Clostridium difficile QCD-66c26] gi|255651909|ref|ZP_05398811.1| hypothetical protein CdifQCD_17123 [Clostridium difficile QCD-37x79] gi|260687131|ref|YP_003218265.1| hypothetical protein CDR20291_1774 [Clostridium difficile R20291] gi|293402444|ref|ZP_06646580.1| radical SAM enzyme, Cfr family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|296450747|ref|ZP_06892500.1| cfr family radical SAM enzyme [Clostridium difficile NAP08] gi|306521660|ref|ZP_07408007.1| hypothetical protein CdifQ_19485 [Clostridium difficile QCD-32g58] gi|323485992|ref|ZP_08091323.1| cfr family radical SAM enzyme [Clostridium symbiosum WAL-14163] gi|323692843|ref|ZP_08107070.1| cfr family Radical SAM enzyme [Clostridium symbiosum WAL-14673] gi|332652412|ref|ZP_08418157.1| radical SAM enzyme, Cfr family [Ruminococcaceae bacterium D16] gi|164512331|emb|CAO78566.2| hypothetical protein [Clostridium difficile] gi|260213148|emb|CBE04584.1| putative uncharacterized protein [Clostridium difficile R20291] gi|291304107|gb|EFE45360.1| radical SAM enzyme, Cfr family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291541455|emb|CBL14565.1| 23S rRNA m(2)A-2503 methyltransferase [Ruminococcus bromii L2-63] gi|296260591|gb|EFH07433.1| cfr family radical SAM enzyme [Clostridium difficile NAP08] gi|323400559|gb|EGA92926.1| cfr family radical SAM enzyme [Clostridium symbiosum WAL-14163] gi|323503157|gb|EGB18992.1| cfr family Radical SAM enzyme [Clostridium symbiosum WAL-14673] gi|332517558|gb|EGJ47161.1| radical SAM enzyme, Cfr family [Ruminococcaceae bacterium D16] Length = 327 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 112/367 (30%), Positives = 174/367 (47%), Gaps = 57/367 (15%) Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69 G +E+ E + + +++ +Y + R ++ S Sbjct: 17 YGFTYKEMSEVIGENE---------AKALYEELYKQLPR----------------KKNLS 51 Query: 70 IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129 ++ I S D T K++ IETV+I + GT+CVS+QVGC + C Sbjct: 52 MLVKNICK---SSD-TEKYVYELKDNKY-----IETVFIKRRDGGTVCVSTQVGCPVGCI 102 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 FC +G VRNLT+ EI+ Q++L R RK++ IV MGMGE Sbjct: 103 FCESGRNGFVRNLTSSEIVQQIILLR---------------------RKVNRIVFMGMGE 141 Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248 PL N+DN+ K++ I D GL+F IT+ST G V + ++ EE + + L ISLHA + Sbjct: 142 PLFNYDNLIKAIHILRDRYGLNFPTDGITISTVGPVDQLKKLREEHLKIQLTISLHAATQ 201 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 RN ++P R Y +E ++ Y N +I F Y++L GIND P D L K +G Sbjct: 202 SARNRIIPHMRIYAIEDVVKQALSYSERHNR-KIVFAYLLLPGINDRPSDVRQLAKWFRG 260 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 IN++ +NP +++IV F ++++G +R G +I AACGQL + Sbjct: 261 KKVMINVLQYNPTSNSRIKAPQKREIVAFKHQLEQAGLEVTMRVSHGREINAACGQLANT 320 Query: 369 SKRIPKV 375 + K Sbjct: 321 YNKFKKK 327 >gi|55297177|dbj|BAD68852.1| florfenicol resistance protein-like [Oryza sativa Japonica Group] Length = 247 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 102/240 (42%), Positives = 143/240 (59%), Gaps = 14/240 (5%) Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC+TG L ++L+ EI+ Q + AR L D G I+N+V M Sbjct: 1 MNCQFCFTGRMGLRKHLSTAEIVEQAVFARRLFSDEFGS--------------ITNVVFM 46 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N DNV K+ +I D GL FS R++T+STSG VP I R +E LA+SL+A Sbjct: 47 GMGEPLHNIDNVLKASAIMVDEQGLQFSPRKVTVSTSGLVPQIKRFLQESNCALAVSLNA 106 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++RN ++PINRKY L +L+ R L ++ FEYVML G+NDS DA L+ + Sbjct: 107 TTDEVRNWIMPINRKYNLSLLLGTLREEIRLKKKYKVFFEYVMLAGVNDSVDDAKRLVDL 166 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 ++GIP KINLI FNP G ++ + + I+ F + + G +R RG D +AACGQL Sbjct: 167 VRGIPCKINLISFNPHSGSQFKPTPDEKIIEFRNILIQDGLVVFVRLSRGDDQMAACGQL 226 >gi|266622739|ref|ZP_06115674.1| radical SAM enzyme, Cfr family [Clostridium hathewayi DSM 13479] gi|288865503|gb|EFC97801.1| radical SAM enzyme, Cfr family [Clostridium hathewayi DSM 13479] gi|291557353|emb|CBL34470.1| 23S rRNA m(2)A-2503 methyltransferase [Eubacterium siraeum V10Sc8a] gi|295092179|emb|CBK78286.1| 23S rRNA m(2)A-2503 methyltransferase [Clostridium cf. saccharolyticum K10] Length = 328 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 112/366 (30%), Positives = 174/366 (47%), Gaps = 57/366 (15%) Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69 G +E+ E + + +++ +Y + R ++ S Sbjct: 17 YGFTYKEMSEVIGENE---------AKALYEELYKQLPR----------------KKNLS 51 Query: 70 IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129 ++ I S D T K++ IETV+I + GT+CVS+QVGC + C Sbjct: 52 MLVKNICK---SSD-TEKYVYELKDNKY-----IETVFIKRRDGGTVCVSTQVGCPVGCI 102 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 FC +G VRNLT+ EI+ Q++L R RK++ IV MGMGE Sbjct: 103 FCESGRNGFVRNLTSSEIVQQIILLR---------------------RKVNRIVFMGMGE 141 Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248 PL N+DN+ K++ I D GL+F IT+ST G V + ++ EE + + L ISLHA + Sbjct: 142 PLFNYDNLIKAIHILRDRYGLNFPTDGITISTVGPVDQLKKLREEHLKIQLTISLHAATQ 201 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 RN ++P R Y +E ++ Y N +I F Y++L GIND P D L K +G Sbjct: 202 SARNRIIPHMRIYAIEDVVKQALSYSERHNR-KIVFAYLLLPGINDRPSDVRQLAKWFRG 260 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 IN++ +NP +++IV F ++++G +R G +I AACGQL + Sbjct: 261 KKVMINVLQYNPTSNSRIKAPQKREIVAFKHQLEQAGLEVTMRVSHGREINAACGQLANT 320 Query: 369 SKRIPK 374 + K Sbjct: 321 YNKFKK 326 >gi|212694595|ref|ZP_03302723.1| hypothetical protein BACDOR_04123 [Bacteroides dorei DSM 17855] gi|212663096|gb|EEB23670.1| hypothetical protein BACDOR_04123 [Bacteroides dorei DSM 17855] Length = 273 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 98/292 (33%), Positives = 148/292 (50%), Gaps = 29/292 (9%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 K +L+G +E+++ + +G+P + QI W+Y + + M+++S + R L Sbjct: 4 PKTALLGRTLDEIQQIVRNLGMP----KFAAKQITSWLYDKKVETIDEMTNLSLKHRETL 59 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + + + V+E S DGT K+L R PA IE VYIP++ R TLCVSSQVGC Sbjct: 60 KEGYEVGASAPVEEMRSVDGTVKYLFRTPAHNF-----IEAVYIPDEDRATLCVSSQVGC 114 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG Q NL+A +IL Q+ K++N+V Sbjct: 115 KMNCKFCMTGKQGFTANLSAHQILNQIYSI-------------------PEREKLTNLVF 155 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244 MGMGEP N D V K L I + G +S +RIT+S+ G + R E LAIS+H Sbjct: 156 MGMGEPFDNLDEVLKVLEILTSEYGYGWSPKRITVSSVGLKKGLERFLNESDCHLAISMH 215 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 R L+P + + + +ID +Y S RR++FEY++ KG+N+ Sbjct: 216 TPIPSQRRDLMPAEKAFSITEIIDILHNY-DFSKQRRLSFEYIVFKGVNERD 266 >gi|160938516|ref|ZP_02085871.1| hypothetical protein CLOBOL_03414 [Clostridium bolteae ATCC BAA-613] gi|167760863|ref|ZP_02432990.1| hypothetical protein CLOSCI_03251 [Clostridium scindens ATCC 35704] gi|225375530|ref|ZP_03752751.1| hypothetical protein ROSEINA2194_01155 [Roseburia inulinivorans DSM 16841] gi|239623023|ref|ZP_04666054.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|240147536|ref|ZP_04746137.1| radical SAM enzyme, Cfr family [Roseburia intestinalis L1-82] gi|158438889|gb|EDP16646.1| hypothetical protein CLOBOL_03414 [Clostridium bolteae ATCC BAA-613] gi|167661466|gb|EDS05596.1| hypothetical protein CLOSCI_03251 [Clostridium scindens ATCC 35704] gi|225212619|gb|EEG94973.1| hypothetical protein ROSEINA2194_01155 [Roseburia inulinivorans DSM 16841] gi|239522602|gb|EEQ62468.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] gi|257200248|gb|EEU98532.1| radical SAM enzyme, Cfr family [Roseburia intestinalis L1-82] Length = 329 Score = 282 bits (723), Expect = 5e-74, Method: Composition-based stats. Identities = 113/385 (29%), Positives = 176/385 (45%), Gaps = 64/385 (16%) Query: 1 MNFLKKESL-------IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM 53 M L K +L G +E+ E + + R ++ +Y + Sbjct: 1 MKHLPKSTLTEILNDPYGFTYKEMSEVI-------GEDKARA--LYAELYKQPFH----- 46 Query: 54 SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR 113 ++ SI ++ S D T K++ IETV+I + Sbjct: 47 -----------KKNLSISTKKVYK---SSD-TEKYVYELKDNRY-----IETVFIKRRDG 86 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 GT+CVS+QVGCS+ C FC +G VRNLT EI+ QV+L R Sbjct: 87 GTVCVSTQVGCSVGCIFCESGRNGFVRNLTPSEIVQQVILIRQ----------------- 129 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233 K++ IV MGMGEPL N+DN+ ++ I D GL+F IT+ST G V + ++ E Sbjct: 130 ----KVNRIVFMGMGEPLFNYDNLIAAIHILRDRNGLNFPTDGITVSTVGPVNQLKKLRE 185 Query: 234 E-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 E + + L ISLHA + RN ++P Y +E ++ Y N ++ F Y++L GI Sbjct: 186 EHLKIQLTISLHAATQAARNCIIPHMHMYAIEDVVKQALSYSQRHNR-KVVFAYLLLPGI 244 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 ND D L K KG IN++ +NP + ++++V F ++++G +R Sbjct: 245 NDRSSDIRQLAKWFKGKNVMINVLQYNPTSNSKIRAPQKQEMVAFKHQLEQTGLEVTMRV 304 Query: 353 PRGLDILAACGQLKSLSKRIPKVPR 377 G +I AACGQL + + K + Sbjct: 305 SHGREIKAACGQLANTYNKAKKQQK 329 >gi|261324195|ref|ZP_05963392.1| ribosomal RNA large subunit methyltransferase N [Brucella neotomae 5K33] gi|261300175|gb|EEY03672.1| ribosomal RNA large subunit methyltransferase N [Brucella neotomae 5K33] Length = 307 Score = 282 bits (723), Expect = 5e-74, Method: Composition-based stats. Identities = 136/207 (65%), Positives = 168/207 (81%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K SLIGM REE+ AL+ G+P+R V+MR SQ+W W+YVRG+ DF M +IS+++R +L Sbjct: 27 KPSLIGMSREEMAAALIAAGVPERQVKMRISQLWHWLYVRGVSDFADMRNISKDLRAMLA 86 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 QHF+I PE+V+E+IS DGTRKWL RFP R G PVEIE+VYIPE+ RGTLC+SSQVGC+ Sbjct: 87 QHFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIPEEGRGTLCISSQVGCT 146 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 LTCSFC+TGTQKLVRNLT+EEIL Q+L AR LGDFP + +G ++P+ GRKI+NIVMM Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSF 212 GMGEPL NF+ VKK+L IASD GLSF Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSF 233 >gi|225388237|ref|ZP_03757961.1| hypothetical protein CLOSTASPAR_01972 [Clostridium asparagiforme DSM 15981] gi|225045705|gb|EEG55951.1| hypothetical protein CLOSTASPAR_01972 [Clostridium asparagiforme DSM 15981] Length = 304 Score = 282 bits (722), Expect = 6e-74, Method: Composition-based stats. Identities = 108/328 (32%), Positives = 165/328 (50%), Gaps = 38/328 (11%) Query: 55 DISQEVRHLL------NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYI 108 + ++ + L ++ S++ I S D T K++ IETV+I Sbjct: 8 NEAKALYEELYKQLPRKKNLSMLVKNICK---SSD-TEKYVYELKDNKY-----IETVFI 58 Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168 + GT+CVS+QVGC + C FC +G VRNLT+ EI+ Q++L R Sbjct: 59 KRRDGGTVCVSTQVGCPVGCIFCESGRNGFVRNLTSSEIVQQIILLR------------- 105 Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228 RK++ IV MGMGEPL N+DN+ K++ I D GL+F IT+ST G V + Sbjct: 106 --------RKVNRIVFMGMGEPLFNYDNLIKAIHILRDRYGLNFPTDGITISTVGPVDQL 157 Query: 229 ARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 ++ EE + + L ISLHA + RN ++P R Y +E ++ Y N +I F Y+ Sbjct: 158 KKLREEHLKIQLTISLHAATQSARNRIIPHMRIYAIEDVVKQALSYSERHNR-KIVFAYL 216 Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYS 347 +L GIND P D L K +G IN++ +NP +++IV F ++++G Sbjct: 217 LLPGINDRPSDVRQLAKWFRGKKVMINVLQYNPTSNSRIKAPQKREIVAFKHQLEQAGLE 276 Query: 348 SPIRTPRGLDILAACGQLKSLSKRIPKV 375 +R G +I AACGQL + + K Sbjct: 277 VTMRVSHGREINAACGQLANTYNKFKKK 304 >gi|294670879|ref|ZP_06735735.1| hypothetical protein NEIELOOT_02583 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307366|gb|EFE48609.1| hypothetical protein NEIELOOT_02583 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 219 Score = 282 bits (722), Expect = 6e-74, Method: Composition-based stats. Identities = 101/232 (43%), Positives = 145/232 (62%), Gaps = 16/232 (6%) Query: 29 RHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKW 88 R Q+ +W++ G DF M+D+++ +R L + + P ++ + S DGTRKW Sbjct: 2 GEKPFRAKQVMRWMHWGGAADFAEMTDLAKSLRAKLEECAIVGVPALMTAQESKDGTRKW 61 Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 LL +G +ETV+IPE RGTLC+SSQVGC+L C+FC TG Q RNLT EI+ Sbjct: 62 LL-----DVGTGNGVETVFIPEADRGTLCISSQVGCALECTFCSTGRQGFNRNLTTAEII 116 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 Q+ A LG P E R ISN+VMMGMGEPL N+DNV ++L++ D Sbjct: 117 GQLWWANKALGATPKNE-----------RMISNVVMMGMGEPLANYDNVVRALAVMLDDH 165 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260 G S S+RR+T+STSG VP + R+ E++ V LA+SLHA ++++R+ +VP+N+ Sbjct: 166 GYSLSRRRVTVSTSGMVPQMDRLKEDMPVALAVSLHASNDEVRDQIVPLNKN 217 >gi|56962848|ref|YP_174574.1| florfenicol/chloramphenicol resistance protein [Bacillus clausii KSM-K16] gi|81366753|sp|Q5WJ42|CFR_BACSK RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr; AltName: Full=23S rRNA m8A2503 methyltransferase gi|56909086|dbj|BAD63613.1| florfenicol/chloramphenicol resistance protein [Bacillus clausii KSM-K16] Length = 350 Score = 282 bits (721), Expect = 7e-74, Method: Composition-based stats. Identities = 113/371 (30%), Positives = 178/371 (47%), Gaps = 40/371 (10%) Query: 14 REELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SII 71 E L+ L + P R QI + I+ I F M+ + + +R L F SI+ Sbjct: 10 YERLKHFLNALNEPT----YRYKQITEAIFKHRIGAFNKMTTLPKALRESLINEFGPSIL 65 Query: 72 YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG-TLCVSSQVGCSLTCSF 130 E V E S T K LL+ + G ++E V + ++ + C+SSQ GC L C+F Sbjct: 66 TVEPVLETTSQQVT-KVLLK-----VAGNNQVEAVRMHYEAGWESFCISSQCGCGLGCTF 119 Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 C TG L +NL+A+E+ Q+L G + ++ MGMGE Sbjct: 120 CSTGAIGLKQNLSADEMTDQLLYF------------------YLKGHSLDSVSFMGMGEA 161 Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSND 249 L N + +L++ D + S RRIT+ST G +PNI R+ + L SLH+ +D Sbjct: 162 LANVR-IFDALNVLVDRQLFALSPRRITVSTVGIIPNIQRMTSSFPQMNLTFSLHSPFHD 220 Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG- 308 R+ L+PIN KYPL+ +++ + + ++ YVML+G+NDS + A L+K + Sbjct: 221 QRSELMPINNKYPLDQVMNVLDQHIHETGR-KVYIAYVMLRGVNDSEKHAEALVKRILNN 279 Query: 309 ---IPAKINLIPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 +NLI +NP G Y + ++ + TF +K + IR+ G +I AACG Sbjct: 280 RYPHLYHVNLIRYNPTVGTPENYGQTIEEKLQTFYRVVKSARIPVTIRSQFGREIDAACG 339 Query: 364 QLKSLSKRIPK 374 QL + + Sbjct: 340 QLYGQYQAKKR 350 >gi|301059158|ref|ZP_07200099.1| 23S rRNA m2A2503 methyltransferase [delta proteobacterium NaphS2] gi|300446738|gb|EFK10562.1| 23S rRNA m2A2503 methyltransferase [delta proteobacterium NaphS2] Length = 345 Score = 282 bits (721), Expect = 8e-74, Method: Composition-based stats. Identities = 111/363 (30%), Positives = 171/363 (47%), Gaps = 31/363 (8%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDF--QGMSDISQEVRHLLNQ 66 L+ + E L A+ +++ Y D SQ +R L Q Sbjct: 4 LLELTYENLLAAVSD---RYGKGSFLAQTLYREFYKDLKPDAWRAEAIRNSQGLRDRLRQ 60 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + P V ++I DG K++ +E+V +P ++ T+C+SSQVGC + Sbjct: 61 DWCFE-PGRVKDEIHEDGLIKFVTELVD-----GHRVESVILPLRTHQTVCISSQVGCRM 114 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG L R+L+ EE++ QV AR GR I N+V MG Sbjct: 115 GCRFCETGKLGLARSLSVEEMVGQVYQARH-----------------EFGRSIRNVVFMG 157 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV--MLAISLH 244 MGEP NF+NV +++ + SD GL ++RRITLST+G + I ++ L +SL+ Sbjct: 158 MGEPFDNFENVIQAVRVMSDQRGLDIAQRRITLSTAGRIDGIRKLAALNMPSLNLTVSLN 217 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A ++ LR L+P++ K L +L YP + YV++ +ND L + Sbjct: 218 APNDQLRQRLMPLHDKGSLALLQKTLMAYPLKKGKV-LNVAYVLISHVNDQGEHVQQLAE 276 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 LK + A++NLIP+N + Q D F E + G + R PRG +++AACGQ Sbjct: 277 WLKPLRARVNLIPYNSIKDSLFQPPRQGDTDLFREKLIELGVNVQKRIPRGRELMAACGQ 336 Query: 365 LKS 367 L + Sbjct: 337 LGA 339 >gi|293400143|ref|ZP_06644289.1| radical SAM enzyme, Cfr family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306543|gb|EFE47786.1| radical SAM enzyme, Cfr family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 329 Score = 282 bits (721), Expect = 8e-74, Method: Composition-based stats. Identities = 108/327 (33%), Positives = 164/327 (50%), Gaps = 32/327 (9%) Query: 55 DISQEVRHLL-NQHFSIIYPEIVDEKI--SCDGTRKWLLRFPARCIGGPVEIETVYIPEK 111 D ++ + L Q F I +K+ S D T K++ IETV+I + Sbjct: 31 DKARALYAKLYKQPFHKKNLSISTKKVYKSSD-TEKYVYELKDNRY-----IETVFIKRR 84 Query: 112 SRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMV 171 GT+CVS+QVGCS+ C FC +G VRNLT EI+ QV+L R Sbjct: 85 DGGTVCVSTQVGCSVGCIFCESGRNGFVRNLTPSEIVQQVILIRQ--------------- 129 Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231 K++ IV MGMGEPL N+DN+ ++ I D GL+F IT+ST G V + ++ Sbjct: 130 ------KVNRIVFMGMGEPLFNYDNLIAAIHILRDRNGLNFPTDGITISTVGPVNQLKKL 183 Query: 232 GEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 EE + + L ISLHA + +RN ++P Y +E ++ Y N ++ F Y++L Sbjct: 184 REEHLKIQLTISLHAATQAVRNCIIPHMHMYAIEDVVKQALSYSQRHNR-KVVFAYLLLP 242 Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI 350 GIND D L K KG IN++ +NP + ++++V F ++++G + Sbjct: 243 GINDRSSDIRQLAKWFKGKNVMINVLQYNPTSNSKIRAPQKQEMVAFKHQLEQTGLEVTM 302 Query: 351 RTPRGLDILAACGQLKSLSKRIPKVPR 377 R G +I AACGQL + + K + Sbjct: 303 RVSHGREIKAACGQLANTYNKAKKQQK 329 >gi|254442339|ref|ZP_05055815.1| radical SAM enzyme, Cfr family [Verrucomicrobiae bacterium DG1235] gi|198256647|gb|EDY80955.1| radical SAM enzyme, Cfr family [Verrucomicrobiae bacterium DG1235] Length = 342 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 116/371 (31%), Positives = 172/371 (46%), Gaps = 37/371 (9%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQ--EVRHL 63 K S+ + ++LE+ L G R +R +++ +F + ++ Sbjct: 2 KTSIYDI--KKLEKHLRHNGFGARELRRTYRMLFR--------EFTPLENLGWDDAFTAN 51 Query: 64 LNQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQ 121 + F Y +V S DG K L P +IETV + R ++CVSSQ Sbjct: 52 FKEQFETSYLTLVSRIDSKIDGATKLLFETPD-----GKKIETVILRIATGRTSICVSSQ 106 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC+ C FC TG RNL +EEIL QV+ A G ++ S R + N Sbjct: 107 VGCTEKCRFCATGELGFFRNLKSEEILDQVVQA--------------GRILASEDRSLRN 152 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLA 240 IV MGMGEPL N+DN+ ++ F +RIT+S+ G I + + V LA Sbjct: 153 IVFMGMGEPLRNYDNLVAAMDQLLSEHVFKFVPKRITVSSLGIPELIVKFAQRFPQVSLA 212 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SL+ ++ R+ ++PIN +YP+ L + + EY+M K +NDS DA Sbjct: 213 LSLNGSNDAARSEVMPINNRYPMADLRSMLEQLETIREGI-VMIEYIMFKDLNDSVEDAA 271 Query: 301 NLIKILKGIPAKINLIPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 + L+G+ INLIP+NP +L S + I F ++ GY R G DI Sbjct: 272 KVAAFLRGLAVHINLIPYNPDYSLNKSFLPSSIETIEAFKNHLQSEGYKVTRRFSLGQDI 331 Query: 359 LAACGQLKSLS 369 AACGQL + S Sbjct: 332 AAACGQLANKS 342 >gi|317501363|ref|ZP_07959565.1| cfr family Radical SAM enzyme [Lachnospiraceae bacterium 8_1_57FAA] gi|325263263|ref|ZP_08129998.1| radical SAM enzyme, Cfr family [Clostridium sp. D5] gi|328948778|ref|YP_004366115.1| radical SAM protein [Treponema succinifaciens DSM 2489] gi|316897227|gb|EFV19296.1| cfr family Radical SAM enzyme [Lachnospiraceae bacterium 8_1_57FAA] gi|324031656|gb|EGB92936.1| radical SAM enzyme, Cfr family [Clostridium sp. D5] gi|328449102|gb|AEB14818.1| radical SAM enzyme, Cfr family [Treponema succinifaciens DSM 2489] Length = 329 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 109/369 (29%), Positives = 171/369 (46%), Gaps = 57/369 (15%) Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69 G +E+ E + + R ++ +Y + ++ S Sbjct: 17 YGFTYKEMSEVI-------GEDKARA--LYTELYKQPFH----------------KKNLS 51 Query: 70 IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129 I ++ S D T K++ IETV+I + GT+CVS+QVGCS+ C Sbjct: 52 ISTKKVYK---SSD-TEKYVYELKDNRY-----IETVFIKRRDGGTVCVSTQVGCSVGCI 102 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 FC +G VRNLT EI+ QV+L R K++ IV MGMGE Sbjct: 103 FCESGRNGFVRNLTPSEIVQQVILIRQ---------------------KVNRIVFMGMGE 141 Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248 PL N+DN+ ++ I D GL+F IT+ST G V + ++ EE + + L ISLHA + Sbjct: 142 PLFNYDNLIAAIHILRDRNGLNFPTDGITVSTVGPVNQLKKLREEHLKIQLTISLHAATQ 201 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 RN ++P Y +E ++ Y N ++ F Y++L GIND D L K KG Sbjct: 202 AARNCIIPHMHMYAIEDVVKQALSYSQRHNR-KVVFAYLLLPGINDRSSDIRQLAKWFKG 260 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 IN++ +NP + ++++V F ++++G +R G +I AACGQL + Sbjct: 261 KNVMINVLQYNPTSNSKIRAPQKQEMVAFKHQLEQTGLEVTMRVSHGREIKAACGQLANT 320 Query: 369 SKRIPKVPR 377 + K + Sbjct: 321 YNKAKKQQK 329 >gi|330999065|ref|ZP_08322788.1| putative 23S rRNA m2A2503 methyltransferase [Parasutterella excrementihominis YIT 11859] gi|329575586|gb|EGG57120.1| putative 23S rRNA m2A2503 methyltransferase [Parasutterella excrementihominis YIT 11859] Length = 302 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 108/320 (33%), Positives = 163/320 (50%), Gaps = 31/320 (9%) Query: 61 RHLLNQHFSIIYPEIVDEKI--SCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118 R+ +N HF+ I +K+ S D T K++ IETV+I + GT+CV Sbjct: 11 RNYINSHFTKKNLSISTKKVYKSSD-TEKYVYELKDNRY-----IETVFIKRRDGGTVCV 64 Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 S+QVGC + C FC +G VRNLT EI+ QV+L R K Sbjct: 65 STQVGCPVGCIFCESGRNGFVRNLTPSEIVQQVILIRQ---------------------K 103 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGV 237 ++ IV MGMGEPL N+DN+ ++ I D GL+F IT+ST G V + ++ EE + + Sbjct: 104 VNRIVFMGMGEPLFNYDNLIAAIHILRDRNGLNFPTDGITVSTVGPVKQLKKLREEHLKI 163 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 L ISLHA + RN ++P KY +E ++ Y N ++ F Y++L GIND Sbjct: 164 QLTISLHAATQAARNCIIPHMHKYAIEDVVKQALSYSQRHNR-KVVFAYLLLPGINDRSS 222 Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 D L K KG IN++ +NP + ++++V F ++++G +R G + Sbjct: 223 DIRQLAKWFKGKNVMINVLQYNPTSNSKIRAPQKQEMVAFKHQLEQTGLEVTMRVSHGRE 282 Query: 358 ILAACGQLKSLSKRIPKVPR 377 I AACGQL + + K + Sbjct: 283 IKAACGQLANTYNKAKKQQK 302 >gi|219129697|ref|XP_002185019.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217403514|gb|EEC43466.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 387 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 108/348 (31%), Positives = 156/348 (44%), Gaps = 44/348 (12%) Query: 54 SDISQEVRHLLNQ-----HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVY 107 S + ++ L + F + I + S D T K ++ + +E+V Sbjct: 60 SQLPRKFLDFLQEDAQSSGFVTVTSRIEFAQTSADRSTTKLAVQLHDGQL-----VESVL 114 Query: 108 IPE-------KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160 + SR +LCVSSQ GC++ C+FC TGT L NLTA EIL Q+ Sbjct: 115 MRYVSTATSNNSRASLCVSSQCGCAMGCTFCATGTMGLSGNLTAGEILEQI--------- 165 Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLS 220 + N+V MGMGEPL N+ NV ++ D + + R+T+S Sbjct: 166 -----------PLPKLDLVRNVVFMGMGEPLDNYSNVVEACRALIDRQRWNLAHGRVTVS 214 Query: 221 TSGFVPNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY--PGLS 277 T G V I ++ E+ V LA+SLHA + R +VP + YPLE LIDA + L Sbjct: 215 TVGLVSQIRKLTAELPEVSLALSLHAPNQQDRQAIVPTAKHYPLEDLIDALDQHMMAYLQ 274 Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE-YLCSDQKDIVT 336 EYVML+G + A L K+ + +NLIP+N + C ++ + Sbjct: 275 KRTNPMIEYVMLEGPTSTLECAHQLGKLCENRHLVVNLIPYNQTNVRDVLRCPSREHMEE 334 Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQITG 384 F E + G IR G DI +ACGQL +L R K + E G Sbjct: 335 FREIVASYGSFCTIRKTMGADIDSACGQLITL--RENKQSQNEHNAKG 380 >gi|219113956|ref|XP_002176161.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217402902|gb|EEC42868.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 471 Score = 279 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 104/334 (31%), Positives = 152/334 (45%), Gaps = 42/334 (12%) Query: 54 SDISQEVRHLLNQ-----HFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVEIETVY 107 S + ++ L + F + I + S D T K ++ + +E+V Sbjct: 60 SQLPRKFLDFLQEDAQSSGFVTVTSRIEFAQTSADRSTTKLAVQLHDGQL-----VESVL 114 Query: 108 IPE-------KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160 + SR +LCVSSQ GC++ C+FC TGT L NLTA EIL Q+ Sbjct: 115 MRYVSTATSNNSRASLCVSSQCGCAMGCTFCATGTMGLSGNLTAGEILEQI--------- 165 Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLS 220 + N+V MGMGEPL N+ NV ++ D + + R+T+S Sbjct: 166 -----------PLPKLDLVRNVVFMGMGEPLDNYSNVVEACRALIDRQRWNLAHGRVTVS 214 Query: 221 TSGFVPNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY--PGLS 277 T G V I ++ E+ V LA+SLHA + R +VP + YPLE LIDA + L Sbjct: 215 TVGLVSQIRKLTAELPEVSLALSLHAPNQQDRQAIVPTAKHYPLEDLIDALDQHMMAYLQ 274 Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE-YLCSDQKDIVT 336 EYVML+G + A L K+ + +NLIP+N + C ++ + Sbjct: 275 KRTNPMIEYVMLEGPTSTLECAHQLGKLCENRHLVVNLIPYNQTNVRDVLRCPSREHMEE 334 Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 F E + G IR G DI +ACGQL +L + Sbjct: 335 FREIVVSYGSFCTIRKTMGADIDSACGQLITLRE 368 >gi|222624395|gb|EEE58527.1| hypothetical protein OsJ_09817 [Oryza sativa Japonica Group] Length = 356 Score = 279 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 101/359 (28%), Positives = 158/359 (44%), Gaps = 49/359 (13%) Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVR-GIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75 + GI + + IWK++ D + + LL Q F + Sbjct: 27 IRAEFAAAGISPHFIPL----IWKYVLQNPRCGDLDAVPSLPAAAYALLRQKFQPTTSTL 82 Query: 76 VDEKISCD-GTRKWLLRFPARCIGGPVEIETVYIPEKSRG--------------TLCVSS 120 S D T K L+R +E V + +R TLCVSS Sbjct: 83 TTAAESKDRTTTKLLIRL-----KNGESVEAVIMRYDTRLGKYDGKPRPGGVRSTLCVSS 137 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC + C FC TGT NL++ EI+ Q++ A +I Sbjct: 138 QVGCKMGCRFCATGTMGFKSNLSSGEIVEQLVHASRYS-------------------QIR 178 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VML 239 N+V MGMGEPL N+ + +++ + S +RIT+ST G + +I + ++ + L Sbjct: 179 NVVFMGMGEPLNNYTALVEAIQVLI-GSPFQLSPKRITVSTVGIIHSINKFNNDLPNINL 237 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA D+R ++P R +PL L++A + Y S + I EY+ML G+ND + A Sbjct: 238 AVSLHAPDQDIRCHIMPAARAFPLVKLMNALQSYQNES-KQTIFIEYIMLDGVNDQEQHA 296 Query: 300 LNLIKILKGIPAKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGL 356 L K+L+ A +NLIPFNP + S + ++ F + ++ + IR G Sbjct: 297 HQLGKLLEMFKAVVNLIPFNPIGSSNNFKTSSEHNVKKFQKILRGIYNIRTTIRQQMGQ 355 >gi|330950791|gb|EGH51051.1| radical SAM protein [Pseudomonas syringae Cit 7] Length = 220 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 103/232 (44%), Positives = 138/232 (59%), Gaps = 19/232 (8%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ ++E+E+ IG R R Q+ KWI+ G+ DF M+++S+ +R L Sbjct: 7 KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 62 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 63 ACAEVRGPEVVSEDISSDGTRKWVVRVES-----GSCVETVYIPQGKRGTLCVSSQAGCA 117 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 L CSFC TG Q NLTA E++ QV +A G P D R I+N+VMM Sbjct: 118 LDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVD----------RAITNVVMM 167 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 GMGEPL NFDNV ++ + D +G SKRR+TLSTSG VP I + + I V Sbjct: 168 GMGEPLLNFDNVIAAMHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDV 219 >gi|226945006|ref|YP_002800079.1| ribosomal RNA large subunit methyltransferase N [Azotobacter vinelandii DJ] gi|226719933|gb|ACO79104.1| Fe-S cluster redox enzyme, radical SAM family [Azotobacter vinelandii DJ] Length = 344 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 102/374 (27%), Positives = 171/374 (45%), Gaps = 34/374 (9%) Query: 12 MMREELEEALLKIGIPQRHV-RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ-HFS 69 M + + L +G H+ R+ + + W G R Q + VR + + H + Sbjct: 1 MKIADFHQRLADLGAKSPHIGRIDRAWLHGWPLDTGTRQQQARDFLPLGVREAMPELHAT 60 Query: 70 IIYP-EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 + + E + DG+ + L+ G +E+V +P R LCVSSQVGC++ C Sbjct: 61 VAGLARLRSEHPAADGSARLLVEL-----GDGQMVESVLLP---RDGLCVSSQVGCAVGC 112 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG L+R L + EI+ QV LAR R + +V MGMG Sbjct: 113 VFCMTGRSGLLRQLGSAEIVAQVALARRF-------------------RPVKKVVFMGMG 153 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVS 247 EP N DNV +++ + + G + + ST G R+ + + LA+SLH+ Sbjct: 154 EPAHNLDNVLEAIDLLGTAGG--IGHKNLVFSTVGDPRVFERLPQGRVKPALALSLHSSD 211 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 LR L+P + + L++ Y + I +++ +L+GINDS + ++++L+ Sbjct: 212 AGLRRRLLPHAPRLDPQELVELAEAYARRT-GYPIQYQWTLLEGINDSLEEMDGILRLLR 270 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 G A +NLIP+N +Y D + IV + G + +R G DI CGQL++ Sbjct: 271 GKYAVMNLIPYNSLEADDYRRPDGERIVGLVRYLHGRGVLTKVRNSAGQDIDGGCGQLRA 330 Query: 368 LSKRIPKVPRQEMQ 381 + + + M+ Sbjct: 331 RAMQPARSRPSRMR 344 >gi|91977329|ref|YP_569988.1| hypothetical protein RPD_2859 [Rhodopseudomonas palustris BisB5] gi|123721790|sp|Q136A2|Y2859_RHOPS RecName: Full=Probable RNA methyltransferase RPD_2859 gi|91683785|gb|ABE40087.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5] Length = 359 Score = 272 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 96/282 (34%), Positives = 146/282 (51%), Gaps = 28/282 (9%) Query: 85 TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTA 144 + K L +E+V I T C+SSQVGC+ C FC +G L+RNL A Sbjct: 85 SEKMLFGLHD-----GYAVESVLIRRFDGHTACISSQVGCAFACRFCASGQAGLMRNLEA 139 Query: 145 EEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIA 204 EI+ QV+ +G K++ IV MG+GEPL N+ V K++ I Sbjct: 140 GEIVEQVV---------------------RLGPKVNRIVFMGIGEPLNNYQQVLKAIRIL 178 Query: 205 SDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPL 263 D G++F ITLST G + ++ EE + + L ISLHA + ++R+ L+P RK+PL Sbjct: 179 RDRQGMNFPTTGITLSTIGIPKALKQLREEHLAINLTISLHATTQEVRDRLIPGARKHPL 238 Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPG 323 +++ + N +TF Y++L GINDS DA L +L+ PA++NL+ +NP G Sbjct: 239 GEVVERACAWARRHNR-PVTFAYLVLPGINDSIADARRLAAMLRDSPARVNLMRWNPVDG 297 Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + + + F ++ + +R +G DI AACGQL Sbjct: 298 VGLQRTPDRSLAHFRTTLENALVPVVVRDTQGRDISAACGQL 339 >gi|323453410|gb|EGB09282.1| hypothetical protein AURANDRAFT_12147 [Aureococcus anophagefferens] Length = 316 Score = 272 bits (695), Expect = 9e-71, Method: Composition-based stats. Identities = 102/336 (30%), Positives = 151/336 (44%), Gaps = 53/336 (15%) Query: 60 VRHLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEK----SRG 114 + + +FS ++V S DG T K ++ ++ETV + SR Sbjct: 3 FKEAVAANFSARSVDLVSRHDSSDGSTSKLVVGLRC-----GKKVETVVMRHGTLRSSRV 57 Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 T+CVSSQVGC++ CSFC TGT + +LT EI+ QVLLA+ + G Sbjct: 58 TVCVSSQVGCAMRCSFCATGTMGMQGDLTRGEIVEQVLLAKGVDG--------------- 102 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-E 233 ++ N+V MGMGEPL N+D V + D L+ R+T+ST G V I + + Sbjct: 103 ---RLRNVVFMGMGEPLNNYDEVLGACRCLLDDRWLALGGGRVTISTVGVVDRIRSLAAD 159 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYP-----------LEMLIDACRHYPGLSNARR- 281 E LA+SLHA + D R ++P ++Y + + Sbjct: 160 EPRANLALSLHAPTQDQRVAIMPAAKRYDLDDLLDALDAYVAEKLRELERRGSRKRRNDE 219 Query: 282 ----ITFEYVMLKGINDSPRDALNLIKILK--------GIPAKINLIPFNPWPGCEYLCS 329 I EY++L G+NDS DA L K+ G A +NLI +NP P Y Sbjct: 220 KQPLIMVEYILLGGVNDSVADADALGKLFSRAGAAPRFGGRAMVNLIAYNPTPDLPYDRP 279 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + F + ++ G + +R G D+ ACGQL Sbjct: 280 SDAAVAAFQKAVQAHGVLTCVRITMGSDVAGACGQL 315 >gi|145352684|ref|XP_001420668.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144580903|gb|ABO98961.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 254 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 104/244 (42%), Positives = 148/244 (60%), Gaps = 20/244 (8%) Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FCYT L +NL+A +I+ QV+ AR ++G ++SN+V M Sbjct: 1 MNCQFCYTAKMGLRKNLSAAQIVEQVVQARRMVG----------------ASEVSNVVFM 44 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245 GMGEPL N D V K++SI D GL FS+ ++T+STSG VP + R E LA+SL+A Sbjct: 45 GMGEPLHNVDEVLKAVSILLDPKGLGFSRNKVTVSTSGLVPQMERFLRESEASLAVSLNA 104 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGL----SNARRITFEYVMLKGINDSPRDALN 301 ++ +RN ++PINRKY LEML+ R + R++ FEY+ML+G+NDS DA Sbjct: 105 TTDYIRNWIMPINRKYNLEMLLGLLRREFPRQSLGRHQRQVFFEYIMLEGVNDSDEDADR 164 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L++I + IP KINLI FN G E+ CSDQ+ I F + + +G + IR RG + ++A Sbjct: 165 LVEIARDIPCKINLIYFNTHDGSEFKCSDQERINAFRQRVSDAGVTCTIRQSRGDEEMSA 224 Query: 362 CGQL 365 CGQL Sbjct: 225 CGQL 228 >gi|255074899|ref|XP_002501124.1| predicted protein [Micromonas sp. RCC299] gi|226516387|gb|ACO62382.1| predicted protein [Micromonas sp. RCC299] Length = 368 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 114/393 (29%), Positives = 179/393 (45%), Gaps = 67/393 (17%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 + +E+E GI + +R+ ++ ++ RG F+ D+S LL +F++ Sbjct: 4 LDIDEVERFARDRGIKKSSLRL----CYRELFRRGKSTFENAPDVSARDMKLLRDNFTVC 59 Query: 72 YPEIVDEKISCDGT-RKWLLRFPARCIGGPVEIETVYIPEKS------------------ 112 E+V+ K + DG+ K ++R + +ETV I Sbjct: 60 TSEVVETKTTEDGSGAKMVVRLHDGKL-----VETVVIGHSRSVDDGDGDETRGDGEDAD 114 Query: 113 ----------RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 R T+CVSSQVGC++ C+FC TGT L+ NLTA EI QV AR+L G Sbjct: 115 VSDGAKNRVFRNTVCVSSQVGCAMGCTFCETGTLGLMANLTAGEICEQVWHARNLCGSTG 174 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 + N+VMMGMGEPL N++ V +L + +R +T+ST Sbjct: 175 ----------------VRNVVMMGMGEPLDNYEEVLIALRAMTHQAVFDMRQRSVTVSTV 218 Query: 223 GFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINR--KYPLEMLIDACRHYPGLSNA 279 G +I R+ ++ V LA+SLHA + DLR L+P + L L ++ R++ S Sbjct: 219 GVPASIRRLADDAPNVGLALSLHAPTQDLRATLLPSAAGTSHTLGRLTESLRYHRQKSGR 278 Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP---GCEYLCSDQKDIVT 336 EY+++ G+NDSP A L ++ +NLIP+NP Y + Sbjct: 279 G-AMIEYIVIDGVNDSPTHARELGEL---SGYFVNLIPYNPTDVGGTHGYRSPADDALER 334 Query: 337 FSECI-KRSGYSSPIRTP--RGLDILAACGQLK 366 + + G + +R RG ++ ACGQL Sbjct: 335 MASILGDEFGVKAKVRWSTRRGREVDGACGQLA 367 >gi|32474560|ref|NP_867554.1| Fe-S-cluster redox enzyme [Rhodopirellula baltica SH 1] gi|81660696|sp|Q7UPG1|Y6963_RHOBA RecName: Full=Probable RNA methyltransferase RB6963 gi|32445099|emb|CAD75101.1| conserved hypothetical protein-putative Fe-S-cluster redox enzyme [Rhodopirellula baltica SH 1] Length = 379 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 98/321 (30%), Positives = 154/321 (47%), Gaps = 24/321 (7%) Query: 65 NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQV 122 + + ++ S DG K L + + IE+V + R TLCVSSQ+ Sbjct: 54 AEAIELHSLKLYQRMDSEIDGATKLLFETESGML-----IESVILRIATGRTTLCVSSQI 108 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+ C FC TG + +NL EEIL QV+ A G ++ R++SNI Sbjct: 109 GCAAACDFCATGKMGIAKNLATEEILDQVVQA--------------GQILRGEDRRLSNI 154 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAI 241 V MGMGEPL N NV +++ + + + S + +ST G + R+ + + LA+ Sbjct: 155 VFMGMGEPLHNEVNVTEAIELLTAPDHFARSPSTVLVSTVGVPAGMLRLAKRFPNLNLAL 214 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH+ R ++P+ +K L L DA + + EY+ML+ +NDS +DA Sbjct: 215 SLHSADQTTREKIIPLGKKASLAQLHDAIHEIQTIQDRE-FMIEYLMLRDVNDSAKDADR 273 Query: 302 LIKILKGIPAKINLIPFNPWPGCEY-LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 LI + + +NLIP+N + S + I +F++ +K SG + +R G DI A Sbjct: 274 LIDWIGDLRVHVNLIPYNTIEASPHLHASSRPVIESFADILKASGLKTTVRYSLGNDIEA 333 Query: 361 ACGQLKSLSKRIPKVPRQEMQ 381 ACGQL R + + + Sbjct: 334 ACGQLIRQENRQRAMQARRTE 354 >gi|115377656|ref|ZP_01464850.1| radical SAM domain protein [Stigmatella aurantiaca DW4/3-1] gi|310824447|ref|YP_003956805.1| ribosomal RNA large subunit methyltransferase n [Stigmatella aurantiaca DW4/3-1] gi|115365318|gb|EAU64359.1| radical SAM domain protein [Stigmatella aurantiaca DW4/3-1] gi|309397519|gb|ADO74978.1| Ribosomal RNA large subunit methyltransferase N [Stigmatella aurantiaca DW4/3-1] Length = 361 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 111/365 (30%), Positives = 163/365 (44%), Gaps = 33/365 (9%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR---HLL 64 +L + EL EAL + VR +++ ++ G R + + Q R L Sbjct: 2 NLKQLSLPELGEALAPLAPTPTAVR----KVFAAVFAHGARTVEEVCAAPQVPRRVAEHL 57 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVG 123 H + E+V+ + + DG K+L P +E V IP + +CVSSQVG Sbjct: 58 RAHGQMPRLEVVERRQAEDGFVKYLFGSPL-----GGRVEAVRIPIFDEKYIVCVSSQVG 112 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L C FC TG RNL EIL QV+ R R + +V Sbjct: 113 CALACDFCMTGKLGFQRNLKTWEILDQVMQVRE-----------------EADRPVRGVV 155 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAIS 242 MGMGEPL N+ ++ I S+ G + S IT ST+G VP I R E LA S Sbjct: 156 FMGMGEPLLNYAETIRAAQILSNPAGFAISGTAITFSTAGMVPAIRRYTSEGHPYRLAFS 215 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 + + + R ++PI + +PL L++A R Y + R YV + G N DA L Sbjct: 216 VTSAIPEKRLKVLPIEKGHPLPELVEAIREYTQVR-RERAMIAYVAISGFNLGREDAQAL 274 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +GIP K++LI P +YL +++ F + ++ R G DI AAC Sbjct: 275 KDTFEGIPIKVDLIDV-TDPTGKYLPPSAEELKAFRDHLQILKAPIARRYSGGKDIGAAC 333 Query: 363 GQLKS 367 G L++ Sbjct: 334 GTLEA 338 >gi|219558900|ref|ZP_03537976.1| hypothetical protein MtubT1_16977 [Mycobacterium tuberculosis T17] Length = 238 Score = 268 bits (686), Expect = 8e-70, Method: Composition-based stats. Identities = 90/250 (36%), Positives = 133/250 (53%), Gaps = 20/250 (8%) Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C FC TG L RNL+ EIL QV + L D G ++SN+V Sbjct: 1 GMACPFCATGQGGLTRNLSTAEILEQVRAGAAALRD-------------DFGDRLSNVVF 47 Query: 185 MGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAI 241 MGMGEPL N+ V ++ + G S R +T+ST G P I + + +GV LA+ Sbjct: 48 MGMGEPLANYARVLAAVQRITARPPSGFGISARAVTVSTVGLAPAIRNLADARLGVTLAL 107 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA + LR+ LVP+N ++ + +DA R+Y ++ R++ EY +++ +ND P A Sbjct: 108 SLHAPDDGLRDTLVPVNNRWRISEALDAARYYANVTGR-RVSIEYALIRDVNDQPWRADL 166 Query: 302 LIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 L K L G A +NLIP NP PG ++ S + F + ++ G S +R RG +I Sbjct: 167 LGKRLHRVLGPLAHVNLIPLNPTPGSDWDASPKPVEREFVKRVRAKGVSCTVRDTRGREI 226 Query: 359 LAACGQLKSL 368 AACGQL ++ Sbjct: 227 SAACGQLAAV 236 >gi|67592602|ref|XP_665654.1| hypothetical protein [Cryptosporidium hominis TU502] gi|54656439|gb|EAL35423.1| hypothetical protein Chro.40137 [Cryptosporidium hominis] Length = 600 Score = 268 bits (686), Expect = 9e-70, Method: Composition-based stats. Identities = 116/492 (23%), Positives = 181/492 (36%), Gaps = 155/492 (31%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 +KK S+ + L +AL G+ R+ IW+ I +GI+D + DI + Sbjct: 7 TDIKKHSIFD--YKSLTKALDDAGV----KRIHAYTIWRNIVQKGIKDMSEIKDIPKAAY 60 Query: 62 HLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKS-------- 112 ++N+ FSI+ ++++ + S DG T K + R EIE V + Sbjct: 61 KIINEQFSILNIQLINSQTSKDGNTTKIIFRLQD-----SHEIEAVIMRYGDDQVNENTN 115 Query: 113 -------------------------RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147 R ++CVSSQ+GC + C FC TG+ L +L + EI Sbjct: 116 ICNSNSNNNNNDSNQQEISTSSKYKRISICVSSQIGCRMGCMFCATGSMGLRGSLLSGEI 175 Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207 L Q+ +++L + + N+V MGMGEPL N+D V S+ + D Sbjct: 176 LQQLYYIKNILKE-----------------PVRNVVFMGMGEPLENYDEVIDSIRLMVDP 218 Query: 208 MGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEML 266 S S I +ST G NI + +++ V L +SLHA + LR +VPI R Y + L Sbjct: 219 RIFSLSSGHILVSTVGIPSNIVNLADDLPGVGLCLSLHAPNQSLRERIVPIARLYKISDL 278 Query: 267 IDACRHYPGLS-----------------------------------NARRITFEYVMLKG 291 + + + + + I EY MLK Sbjct: 279 MRSLDIFIFKTIINKCYKNLLDDRNKDHIKDNMNYDDILISNKLLYGHKMIIIEYTMLKD 338 Query: 292 INDSPRDALNLIKILKGIP------------------------------------AKI-- 313 +NDS A+ L +LK P + I Sbjct: 339 VNDSEDHAVELANLLKNTPISKNIIEEIIDNRDDSVKMNINNYMSDNKIINKNLKSHIAS 398 Query: 314 ------------------NLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 NLIP+N + ++ I F++ + +R Sbjct: 399 TIFKELSKDFNRTNFAIVNLIPYNKTNTSTRFSTPSKEIITKFAKVLIDLNIFVTVRRKM 458 Query: 355 GLDILAACGQLK 366 G I ACGQL Sbjct: 459 GDGIFGACGQLA 470 >gi|66357070|ref|XP_625713.1| conserved protein with transmembrane region at C-terminus [Cryptosporidium parvum Iowa II] gi|46226740|gb|EAK87719.1| conserved protein with transmembrane region at C-terminus [Cryptosporidium parvum Iowa II] Length = 602 Score = 268 bits (686), Expect = 9e-70, Method: Composition-based stats. Identities = 114/496 (22%), Positives = 182/496 (36%), Gaps = 154/496 (31%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 +KK S+ + L +AL G+ R+ IW+ I +GI++ + DI + Sbjct: 10 TDIKKHSIFD--YKSLTKALDDAGV----KRIHAYTIWRNIVQKGIKNMSEIKDIPKAAY 63 Query: 62 HLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKS-------- 112 ++N+ FSI+ ++++ + S DG T K + R EIE V + Sbjct: 64 KIINEQFSILNIQLINSQTSKDGNTTKIIFRLQD-----SHEIEAVIMRYGDDQVNENTN 118 Query: 113 -------------------------RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147 R ++CVSSQ+GC + C FC TG+ L +L + EI Sbjct: 119 ICNSNSNNKNNDSNQQEISTSSKYKRISICVSSQIGCRMGCMFCATGSMGLRGSLLSGEI 178 Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207 L Q+ +++L + + N+V MGMGEPL N+D V S+ + D Sbjct: 179 LQQLYYIKNILKE-----------------PVRNVVFMGMGEPLENYDEVIDSIRLMVDP 221 Query: 208 MGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEML 266 S S I +ST G NI + +++ V L +SLHA + LR ++PI R Y + L Sbjct: 222 RIFSLSSGHILVSTVGIPSNIINLADDLPGVGLCLSLHAPNQSLRERIIPIARLYKISDL 281 Query: 267 IDACRHYPGLS-----------------------------------NARRITFEYVMLKG 291 + + + + + I EY MLK Sbjct: 282 MRSLDIFIFKTIINKCYKNLLDDRNKDHIKDNMNYDDILISNKLLYGHKMIIIEYTMLKD 341 Query: 292 INDSPRDALNLIKILKGIP-----------------------------------AKI--- 313 +NDS A+ L +LK P + I Sbjct: 342 VNDSEDHAVELANLLKNTPISKNIIEEIIDNRDDSVKMNINYMSDNKIINKNFKSHIAST 401 Query: 314 -----------------NLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 NLIP+N + ++ I F++ + +R G Sbjct: 402 IFKELSKDFNRTNFAIVNLIPYNKTNTSTRFSTPSKEIITKFAKVLIDLNIFVTVRRKMG 461 Query: 356 LDILAACGQLKSLSKR 371 I ACGQL + Sbjct: 462 DGIFGACGQLALKQAK 477 >gi|266624063|ref|ZP_06116998.1| radical SAM enzyme, Cfr family [Clostridium hathewayi DSM 13479] gi|288864119|gb|EFC96417.1| radical SAM enzyme, Cfr family [Clostridium hathewayi DSM 13479] Length = 235 Score = 268 bits (686), Expect = 9e-70, Method: Composition-based stats. Identities = 85/238 (35%), Positives = 138/238 (57%), Gaps = 19/238 (7%) Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 FC + L RNL E+L Q+ + L G+ ++SN+V+MG GE Sbjct: 1 FCASTLDGLERNLRPAEMLDQIYRIQYLTGE-----------------RVSNVVIMGSGE 43 Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248 P+ N+D+V K + + +D GL+ S+R +TLST G VP I ++ +E + + LA+SLHA ++ Sbjct: 44 PMDNYDHVVKFIRLLTDEHGLNVSQRNVTLSTCGIVPGILKLADEGLAITLALSLHAPND 103 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 ++R L+P+ + Y L +++AC Y + R+TFEY ++ G+ND+ +A L ++K Sbjct: 104 EVRKTLMPVAKSYKLNDVLEACHTYFEKTGR-RLTFEYSLVAGVNDNLEEAAALAALIKD 162 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 +NLIP NP +Y+ SD+K I F ++++G + IR G DI ACGQL+ Sbjct: 163 QQGHVNLIPVNPIKERDYVQSDRKAIEAFKNLLEKNGINVTIRREMGRDIHGACGQLR 220 >gi|307824047|ref|ZP_07654274.1| Radical SAM domain protein [Methylobacter tundripaludum SV96] gi|307734831|gb|EFO05681.1| Radical SAM domain protein [Methylobacter tundripaludum SV96] Length = 233 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 107/245 (43%), Positives = 140/245 (57%), Gaps = 13/245 (5%) Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + CSFC+TG Q L RNLT EI+ Q L A L E +I NIV M Sbjct: 1 MNCSFCFTGKQGLKRNLTTSEIVGQFLQAWRWLAKNRPGE-----------ERILNIVFM 49 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLH 244 G GEPL NFD VKK+ I G S +RIT+ST+G++P + R +EI V LA+SLH Sbjct: 50 GQGEPLHNFDAVKKACEIFLSKHGTSIGVQRITISTAGYIPGLKRWSQEIPGVNLALSLH 109 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 + + RN L+PIN KYPL+ ++ P L+ + IT+EY+++K ND+P DA L Sbjct: 110 SPFEEKRNELIPINIKYPLDEVLATIDKIP-LNKKQFITYEYILIKDFNDTPDDAEKLGT 168 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 IL G A INLIPFN +PG Y D I F E + + IR+ +G D+LAACGQ Sbjct: 169 ILAGKSAYINLIPFNSFPGSHYNRPDLDKIEKFKEVLDTFKIPTLIRSAKGDDVLAACGQ 228 Query: 365 LKSLS 369 L S + Sbjct: 229 LNSKN 233 >gi|325677606|ref|ZP_08157260.1| putative 23S rRNA m2A2503 methyltransferase [Ruminococcus albus 8] gi|324110698|gb|EGC04860.1| putative 23S rRNA m2A2503 methyltransferase [Ruminococcus albus 8] Length = 377 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 100/368 (27%), Positives = 160/368 (43%), Gaps = 57/368 (15%) Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69 +E+ + + + R ++K +Y G+ + Sbjct: 20 YNYTFDEVAKCMGEE---------RAKSLFKTLYKSGVS--------PKN---------- 52 Query: 70 IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129 I D + D T K+ IETV I ++ T+CVS+ VGC + C Sbjct: 53 -QTMTIKDIYVGGD-TTKYAFELQD-----GYCIETVCIKRRTGNTVCVSTMVGCPVGCI 105 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 FC +G +RNL+ EI+ Q++L + +++ IV MGMGE Sbjct: 106 FCASGKNGFIRNLSPAEIVQQIVLLKE---------------------RVNRIVFMGMGE 144 Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSN 248 PL N+DN+ KS+ I D GL+F I +ST G V + R+ EE + + +SLHA Sbjct: 145 PLFNYDNLIKSIHILRDRNGLNFPTDGINVSTVGPVEQLKRLREEHLKIQFTLSLHATDQ 204 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 RN+++P + + +++A Y N +IT Y++ GIND D L K +G Sbjct: 205 ATRNMIMPHMKSNSIHSVVEAALSYSERHNR-KITIAYLLAPGINDRASDVRQLGKWFRG 263 Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 INL+ +N +++ +V F ++ +G +R RG I AACGQL S Sbjct: 264 KNVLINLLQYNETACKRIKRPNKQQLVAFKIRLEEAGLEVKLRESRGNRIKAACGQLVSD 323 Query: 369 SKRIPKVP 376 + P Sbjct: 324 YNKGNDAP 331 >gi|108761479|ref|YP_634582.1| ribosomal RNA large subunit methyltransferase N [Myxococcus xanthus DK 1622] gi|122980702|sp|Q1CYE1|Y6459_MYXXD RecName: Full=Probable RNA methyltransferase MXAN_6459 gi|108465359|gb|ABF90544.1| radical SAM domain protein [Myxococcus xanthus DK 1622] Length = 358 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 110/367 (29%), Positives = 162/367 (44%), Gaps = 33/367 (8%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMS---DISQEVRHLL 64 +L + +ELE AL + VR +++ ++ G + + ++ + + V L Sbjct: 2 NLKSLSLQELEAALAPLSPSPAAVR----KVFAAVFAHGAQSVEDVASARQVPRRVGDHL 57 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVG 123 H + IV+ + + DG K+L +GG IE V IP + +CVSSQVG Sbjct: 58 RAHAEMPKLAIVERRRADDGFVKYLF---DSPLGG--RIEAVRIPIFDEKYVICVSSQVG 112 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L C FC TG RNL EIL QVL R R + +V Sbjct: 113 CALACDFCMTGKLGFKRNLQTWEILDQVLQVRE-----------------EADRPVRGVV 155 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAIS 242 MGMGEPL N+ ++ I G S + IT ST+G VP I R E LA S Sbjct: 156 FMGMGEPLLNYKETLRAADILRHPAGFSIAGEAITFSTAGHVPAIRRYVREGHPYRLAFS 215 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 + + + R ++PI + +PL LI A R Y + R YV + G N DA L Sbjct: 216 VTSAIAEKRAKVLPIEKTHPLPELIAAIREYSEVR-RERAMIAYVAISGFNMGREDAEAL 274 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +GI K++LI P +YL +++ F + ++ R G +I AAC Sbjct: 275 KVAFEGIRIKVDLIDV-TDPTGKYLPPTPEELSAFRDHLQILKSPVARRYSGGKEIGAAC 333 Query: 363 GQLKSLS 369 G L + Sbjct: 334 GTLAATQ 340 >gi|87311004|ref|ZP_01093129.1| hypothetical protein DSM3645_15540 [Blastopirellula marina DSM 3645] gi|87286294|gb|EAQ78203.1| hypothetical protein DSM3645_15540 [Blastopirellula marina DSM 3645] Length = 361 Score = 265 bits (679), Expect = 6e-69, Method: Composition-based stats. Identities = 102/294 (34%), Positives = 144/294 (48%), Gaps = 24/294 (8%) Query: 83 DGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141 DG K L R + +E+V + R LCVSSQVGC+ C FC TG + R+ Sbjct: 81 DGASKLLFRTDDGLL-----LESVILRVATGRTALCVSSQVGCAANCDFCATGKMGIARS 135 Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 L+A +IL QV+ A L + GRK+ NIV MGMGEP N V ++L Sbjct: 136 LSAPQILDQVVQANQL--------------LKPEGRKVRNIVFMGMGEPFHNTAAVHETL 181 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRK 260 G S RR +ST G + + V LA+SLH+ R ++P+ K Sbjct: 182 EKLVSPHGFDQSPRRTLVSTVGLPSAMIAFARKFPKVNLALSLHSAIQSRRTEIIPLAAK 241 Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 + L+ L A + + I EY+ML+GIND P D L L+G+P INLIP+N Sbjct: 242 FDLKELRAALDQVAAV-QQQSIMIEYLMLRGINDGPEDRAALADYLRGLPVHINLIPYNR 300 Query: 321 WPGCEY-LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL-KSLSKRI 372 + + ++D F ++ GY+ IR G D+ AACGQL + ++RI Sbjct: 301 VDAAPHLEGTSKEDREAFGAALRGEGYTVTIRYSLGADVDAACGQLVRRENRRI 354 >gi|327543394|gb|EGF29819.1| radical SAM domain protein [Rhodopirellula baltica WH47] Length = 379 Score = 265 bits (679), Expect = 6e-69, Method: Composition-based stats. Identities = 98/321 (30%), Positives = 154/321 (47%), Gaps = 24/321 (7%) Query: 65 NQHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQV 122 + + ++ S DG K L + + IE+V + R TLCVSSQ+ Sbjct: 54 AEAIELHSLKLYQRMDSEIDGATKLLFETESGML-----IESVILRIATGRTTLCVSSQI 108 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+ C FC TG + +NL EEIL QV+ A G ++ R++SNI Sbjct: 109 GCAAACDFCATGKMGIAKNLATEEILDQVVQA--------------GQILRGEDRRLSNI 154 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAI 241 V MGMGEPL N NV +++ + + S + S + +ST G + R+ + + LA+ Sbjct: 155 VFMGMGEPLHNEVNVTEAIELLTASDHFARSPSTVLVSTVGVPAGMLRLAKRFPNLNLAL 214 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH+ R ++P+ +K L L D + + EY+ML+ +NDS +DA Sbjct: 215 SLHSADQTTREKIIPLGKKASLTQLHDTILEIQTIQDRE-FMIEYLMLRDVNDSAKDADR 273 Query: 302 LIKILKGIPAKINLIPFNPWPGCEY-LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 LI + + +NLIP+N + S + I +F++ +K SG + +R G DI A Sbjct: 274 LIDWIGDLRVHVNLIPYNTIEASPHLHASSRPVIESFADILKASGLKTTVRYSLGNDIEA 333 Query: 361 ACGQLKSLSKRIPKVPRQEMQ 381 ACGQL R + + + Sbjct: 334 ACGQLIRQENRQRAMQARRTE 354 >gi|152984959|ref|YP_001348813.1| hypothetical protein PSPA7_3453 [Pseudomonas aeruginosa PA7] gi|205829651|sp|A6V6X8|Y3453_PSEA7 RecName: Full=Probable RNA methyltransferase PSPA7_3453 gi|150960117|gb|ABR82142.1| hypothetical protein PSPA7_3453 [Pseudomonas aeruginosa PA7] Length = 346 Score = 265 bits (679), Expect = 6e-69, Method: Composition-based stats. Identities = 104/384 (27%), Positives = 170/384 (44%), Gaps = 57/384 (14%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVR---------GIRDFQGMSDISQEVRH 62 M ++L + L +G H + W+ R DF + VR Sbjct: 1 MRSQDLHQRLADLGAKPLHC---GRIVRAWLQGRALDACTARQRAEDF-----LPLSVRQ 52 Query: 63 ---LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119 + + + E + DG+ + L+ R +E+V +P RG LCVS Sbjct: 53 GLPRVAEELE-GIARLHSEHPASDGSSRLLVELADR-----QRVESVLLP---RGGLCVS 103 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 +QVGC++ C FC TG L+R + + E++ QV+LAR R + Sbjct: 104 TQVGCAVGCVFCMTGRSGLLRQVGSLEMVAQVVLARRR-------------------RAV 144 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVM 238 +V MGMGEP N DNV +++ + G + + ST G R+ G+ + Sbjct: 145 KKVVFMGMGEPAHNLDNVLEAIDLLGTDGG--IGHKNLVFSTVGDPRVFERLPGQRVKPA 202 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLH+ +LR L+P E L++A Y + I +++ +L+G+NDS + Sbjct: 203 LALSLHSTDAELRRRLLPKAPPLSPEELVEAGETYARQVD-YPIQYQWTLLEGVNDSLEE 261 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDI 358 ++++LKG A +NLIP+N G Y + IV + G + +R G DI Sbjct: 262 MDGILRLLKGRFAVMNLIPYNSMDGDAYRRPRGERIVELVRYLHSRGVLTKVRNSAGQDI 321 Query: 359 LAACGQLKSLS-----KRIPKVPR 377 CGQL++ + +R +V R Sbjct: 322 DGGCGQLRARAEGAAPQRHIRVRR 345 >gi|219114843|ref|XP_002178217.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217409952|gb|EEC49882.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 296 Score = 265 bits (678), Expect = 7e-69, Method: Composition-based stats. Identities = 109/311 (35%), Positives = 151/311 (48%), Gaps = 35/311 (11%) Query: 76 VDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR--GTLCVSSQVGCSLTCSFCYT 133 V E ++ DGT K LL+ +++ETV IP R TLCVSSQVGC C+FC T Sbjct: 1 VHESVAADGTTKLLLQLVD-----GLQVETVIIPWDERQRSTLCVSSQVGCRQACTFCLT 55 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 G ++R+L+A+EIL+QVLLA+ + I NIV MGMGEP N Sbjct: 56 GRMGILRSLSADEILVQVLLAKRACRENNIY-------------PIDNIVFMGMGEPADN 102 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNI 253 D V ++ ++ + + RRIT+ST P+ + V LA S+HA +R Sbjct: 103 TDAVVRAANVLTHQQQFQLTPRRITISTVAPSPDAFLKLGKAPVALAWSVHASREAVRRE 162 Query: 254 LVPINRKYPLEMLIDA-CRHYPGLSNARRIT-FEYVMLKGINDSPRDALNLIKILK---- 307 LVP + Y +E L + + S + R T E +L INDS DA +L + Sbjct: 163 LVPTTK-YTMEELREGYIKALLDRSRSMRTTMLEVTLLDKINDSLEDAEHLADFCQPLLK 221 Query: 308 ---GIPAKINLIPFNPW-----PGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 GI +NLIP+N P Y + I F + + G +RT RG D Sbjct: 222 SVPGIKLVVNLIPWNDISASFGPASVYRKPTTERIGEFQKALIGRGILCYVRTTRGDDEG 281 Query: 360 AACGQLKSLSK 370 AACGQL + +K Sbjct: 282 AACGQLATTNK 292 >gi|327480837|gb|AEA84147.1| Fe-S-cluster redox protein [Pseudomonas stutzeri DSM 4166] Length = 342 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 107/372 (28%), Positives = 171/372 (45%), Gaps = 36/372 (9%) Query: 12 MMREELEEALLKIGIPQRHV-RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-NQHFS 69 M + ++ L IG RH+ RM + + G R Q + VR L Sbjct: 1 MRIPDFQQRLADIGAKPRHIGRMTRAWLKGLPLDVGRRQQQAEDFLPLSVREGLPALSLE 60 Query: 70 IIYP-EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 I + E + DG+ + L+ G +E+V +P R LCVSSQVGC++ C Sbjct: 61 IDALARLRSEHPAADGSARLLVEL-----GDGQMVESVLLP---RDGLCVSSQVGCAVGC 112 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG L+R L + EI+ QV LAR R + +V MGMG Sbjct: 113 VFCMTGKSGLLRQLGSAEIVAQVALARRF-------------------RPVKKVVFMGMG 153 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVS 247 EP N DNV +++ + G + + ST G + R+ ++ + LA+SLH+ Sbjct: 154 EPAHNLDNVLEAIDLLGTEGG--IGHKNLVFSTVGDLRVFERLPQQRVKPALALSLHSTD 211 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 LR L+P + E L++ Y + I +++ +LKGIND+ + ++++LK Sbjct: 212 GALRQALLPRAPQIAPEELVELGETYARAT-GFPIQYQWTLLKGINDNQEEMDGILRLLK 270 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 G A +NLIP+N Y + + IV + G + +R G DI CGQL++ Sbjct: 271 GKYAVMNLIPYNSLEDDAYQRPEGERIVQIVRYLHSRGVLTKVRNSAGQDIDGGCGQLRA 330 Query: 368 LSKRI--PKVPR 377 ++++ + PR Sbjct: 331 RAEQVLGRRRPR 342 >gi|219121243|ref|XP_002185849.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|209582698|gb|ACI65319.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 290 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 98/303 (32%), Positives = 140/303 (46%), Gaps = 27/303 (8%) Query: 80 ISCDGTRKWLLRFPARCIGGPVEIETVYIPE-KSRGTLCVSSQVGCSLTCSFCYTGTQKL 138 S D T K LLR +E+ETV IP R TLCVSSQVGC C+FC TG Sbjct: 4 QSRDSTTKLLLRLSD-----GLEVETVIIPWTGGRSTLCVSSQVGCRQGCTFCATGRMGK 58 Query: 139 VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVK 198 +R+L A+EIL Q+ AR + ++N+V MGMGEP N D V Sbjct: 59 LRSLNADEILAQLFFARKICRQKNLP-------------PVTNVVFMGMGEPADNKDAVI 105 Query: 199 KSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPIN 258 ++ I + S ++T+ST P+ +LA S+HA +++LR LVP Sbjct: 106 RATDIMTTRELFQLSASKVTVSTVAPTPDSFLQFAHAHCVLAWSVHAANDELRRQLVPTT 165 Query: 259 RKYPLEMLIDACRHYPGLSNARRIT-FEYVMLKGINDSPRDALNLIKILK-------GIP 310 + E+ + R T E ++ GINDS ++A L+ + G Sbjct: 166 KHAMTELRQGLIDTLLIRPHNFRTTMLEVALISGINDSEKEADELVDFAQVIIDEVPGCK 225 Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 +NLIPFN Y + + F + ++ G + IRT RG D AACGQL + + Sbjct: 226 LVVNLIPFNDIGQNRYTKPSMEAVSVFQKRLREFGLVAHIRTTRGDDESAACGQLATNKQ 285 Query: 371 RIP 373 + Sbjct: 286 KQR 288 >gi|146282579|ref|YP_001172732.1| Fe-S-cluster redox protein [Pseudomonas stutzeri A1501] gi|205829636|sp|A4VLN9|Y2231_PSEU5 RecName: Full=Probable RNA methyltransferase PST_2231 gi|145570784|gb|ABP79890.1| predicted Fe-S-cluster redox enzyme [Pseudomonas stutzeri A1501] Length = 342 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 107/372 (28%), Positives = 170/372 (45%), Gaps = 36/372 (9%) Query: 12 MMREELEEALLKIGIPQRHV-RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL-NQHFS 69 M + ++ L IG RH+ RM + + G R Q + VR L Sbjct: 1 MRIPDFQQRLADIGAKPRHIGRMTRAWLKGLPLDVGRRQQQAEDFLPLSVREGLPALSLE 60 Query: 70 IIYP-EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 I + E + DG+ + L+ G +E+V +P R LCVSSQVGC++ C Sbjct: 61 IDALARLRSEHPAADGSARLLVEL-----GDGQMVESVLLP---RDGLCVSSQVGCAVGC 112 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FC TG L+R L + EI+ QV LAR R + +V MGMG Sbjct: 113 VFCMTGKSGLLRQLGSAEIVAQVALARRF-------------------RPVKKVVFMGMG 153 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVS 247 EP N DNV +++ + G + + ST G + R+ ++ + LA+SLH+ Sbjct: 154 EPAHNLDNVLEAIDLLGTEGG--IGHKNLVFSTVGDLRVFERLPQQRVKPALALSLHSTD 211 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 LR L+P + E L++ Y + I +++ +LKGIND+ + ++++LK Sbjct: 212 GALRQALLPRAPQIAPEELVELGETYARAT-GFPIQYQWTLLKGINDNQEEMDGILRLLK 270 Query: 308 GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367 G A +NLIP+N Y + + IV + G + +R G DI CGQL++ Sbjct: 271 GKYAVMNLIPYNSLEDDAYQRPEGERIVQIVRYLHSRGVLTKVRNSAGQDIDGGCGQLRA 330 Query: 368 LSKRI--PKVPR 377 ++ + + PR Sbjct: 331 RAEHVLGRRRPR 342 >gi|224003013|ref|XP_002291178.1| hypothetical protein THAPSDRAFT_34735 [Thalassiosira pseudonana CCMP1335] gi|220972954|gb|EED91285.1| hypothetical protein THAPSDRAFT_34735 [Thalassiosira pseudonana CCMP1335] Length = 284 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 99/302 (32%), Positives = 150/302 (49%), Gaps = 26/302 (8%) Query: 68 FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPE-KSRGTLCVSSQVGCS 125 F+ + ++ + S DG T K + + +E+V + SR TLCVSSQVGC+ Sbjct: 1 FATLTSKVQSYRTSKDGSTTKIAVELQDGHV-----VESVLMRHAGSRATLCVSSQVGCA 55 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC TGT + NLT+ EIL Q++ A +L I N+V M Sbjct: 56 MGCTFCATGTMGIRGNLTSGEILEQLVHASRILAFDL----------------IRNVVFM 99 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLH 244 GMGEPL N+ NV + D + + R+T+ST G V I + ++ V LA+SLH Sbjct: 100 GMGEPLNNYANVLAACRAMIDRRLWNLAHNRVTVSTVGVVSRIRDLTRDLPEVNLALSLH 159 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A + +R +VP + P+E LI+A + ++ +R EYVML+G + A L + Sbjct: 160 APNQKMREAIVPAAKGTPIESLIEALDAH-MMAKKKRAMIEYVMLEGDTSTIEAAHQLGQ 218 Query: 305 ILKGIPAKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 + +G +NLIP+N + C ++ + F + G IR G DI ACG Sbjct: 219 LCRGRQLVVNLIPYNKTDVRDKLSCPSEEHMQEFRSIVSSYGSFCSIRRTMGADIAGACG 278 Query: 364 QL 365 QL Sbjct: 279 QL 280 >gi|301793926|emb|CBW36322.1| SAM-dependent methyltransferase [Streptococcus pneumoniae INV104] Length = 243 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 79/248 (31%), Positives = 137/248 (55%), Gaps = 22/248 (8%) Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76 ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN F + + Sbjct: 1 MQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLKQG 56 Query: 77 DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136 + S DGT K+L P + IETV + + ++CV++QVGC++ C+FC +G Sbjct: 57 IVQESADGTVKYLFELPDGML-----IETVLMCQHYGLSVCVTTQVGCNIGCTFCASGLI 111 Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196 K R+L EI+ Q++L + + +IS+IV+MG+GEP N++N Sbjct: 112 KKQRDLNNGEIVAQIMLVQKYFDE------------RGQDERISHIVVMGIGEPFDNYNN 159 Query: 197 VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILV 255 V +D G++ R IT+S SG I +E + V LA+SLHA +N+LR+ ++ Sbjct: 160 VLNFFRTINDDKGMAIGARHITVSISGLAHKIRDFADEGVQVNLAVSLHAPNNELRSSIM 219 Query: 256 PINRKYPL 263 INR +P+ Sbjct: 220 KINRAFPI 227 >gi|146307182|ref|YP_001187647.1| radical SAM domain-containing protein [Pseudomonas mendocina ymp] gi|205829635|sp|A4XU99|Y2155_PSEMY RecName: Full=Probable RNA methyltransferase Pmen_2155 gi|145575383|gb|ABP84915.1| Radical SAM domain protein [Pseudomonas mendocina ymp] Length = 346 Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 101/378 (26%), Positives = 169/378 (44%), Gaps = 44/378 (11%) Query: 12 MMREELEEALLKIGIPQRHVRM--RTSQIWKWIYVR----GIRDFQGMSDISQEVRHLLN 65 M +L + L +G +H+ R W+ + G + + + + VR L Sbjct: 1 MQLADLTQRLAALGAKPQHIGRITRA-----WLQGKPLDTGTKHQKTENFLPLSVRQELP 55 Query: 66 QHFSII--YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + + + E DG+ + L+ + +E+V +P R LC+SSQVG Sbjct: 56 AIAAELDALVRLRSEHPGADGSARLLVELADK-----QMVESVLLP---RDGLCISSQVG 107 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C FC TG L+R L++ E++ QV L R R + +V Sbjct: 108 CAVGCVFCMTGKSGLLRQLSSAEMVAQVALGRRF-------------------RPVKKVV 148 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 MGMGEP N DNV +++ + G + + ST G R+ ++ + LA+S Sbjct: 149 FMGMGEPAHNLDNVLEAIDLLGTEGG--IGHKNLVFSTVGDPRVFERLPQQRVRPALALS 206 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LH +LR L+P + E L++ Y S I +++ +LKGINDS ++ N+ Sbjct: 207 LHTTDAELRQRLLPKAPRIDPEQLMELGEAY-ARSIDYPIQYQWTLLKGINDSQQEMDNI 265 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +++ KG A +NLIP+N Y D + IV + G + +R G DI C Sbjct: 266 LRLFKGKFAVLNLIPYNSLDADNYQRPDGERIVQMVRYLHSRGVLTKVRNSAGQDIDGGC 325 Query: 363 GQLKSLSKRIPKVPRQEM 380 GQL++ + + R + Sbjct: 326 GQLRARAVDLVNTSRLRL 343 >gi|218892205|ref|YP_002441072.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa LESB58] gi|218772431|emb|CAW28213.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa LESB58] Length = 346 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 105/378 (27%), Positives = 168/378 (44%), Gaps = 50/378 (13%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVR---------GIRDFQGMSDISQEVRH 62 M ++L + L +G H + W+ R DF + VRH Sbjct: 1 MRSQDLHQRLADLGAKPLHC---GRIVRAWLQGRALDACTARQRAEDF-----LPLGVRH 52 Query: 63 LLNQHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 L Q + + E + DG+ + L+ R +E+V +P RG LCVS+ Sbjct: 53 GLPQVAAELEGIARLHSEHPASDGSSRLLVELADR-----QMVESVLLP---RGGLCVST 104 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC++ C FC TG L+R + + E++ QV+LAR R + Sbjct: 105 QVGCAVGCVFCMTGRSGLLRQVGSLEMVAQVVLARRR-------------------RAVK 145 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239 +V MGMGEP N DNV +++ + G + + ST G R+ + + L Sbjct: 146 KVVFMGMGEPAHNLDNVLEAIDLLGTDGG--IGHKNLVFSTVGDPRVFERLPRQRVKPAL 203 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH+ +LR L+P E L++A Y + I +++ +L+GINDS + Sbjct: 204 ALSLHSTRAELRRQLLPKAPPLSPEELVEAGEAYARRVD-YPIQYQWTLLEGINDSLEEM 262 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++++LKG A +NLIP+N G Y + IV + G + +R G DI Sbjct: 263 DGILRLLKGRFAVMNLIPYNSMDGDAYRRPSGERIVELVRYLHSRGVLTKVRNSAGQDID 322 Query: 360 AACGQLKSLSKRIPKVPR 377 CGQL++ + + R Sbjct: 323 GGCGQLRARATQATVERR 340 >gi|116049791|ref|YP_791402.1| hypothetical protein PA14_40730 [Pseudomonas aeruginosa UCBPP-PA14] gi|122258902|sp|Q02KY4|Y4073_PSEAB RecName: Full=Probable RNA methyltransferase PA14_40730 gi|115585012|gb|ABJ11027.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa UCBPP-PA14] Length = 346 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 104/374 (27%), Positives = 167/374 (44%), Gaps = 42/374 (11%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRG-----IRDFQGMSDISQEVRHLLNQ 66 M ++L + L +G H + W+ R R + VRH L Q Sbjct: 1 MRSQDLHQRLADLGAKPLHC---GRIVRAWLQGRALDACTARQPAE-DFLPLGVRHGLPQ 56 Query: 67 HFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + + E + DG+ + L+ R +E+V +P RG LCVS+QVGC Sbjct: 57 VAAELEGIARLHSEHPASDGSSRLLVELADR-----QMVESVLLP---RGGLCVSTQVGC 108 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 ++ C FC TG L+R + + E++ QV+LAR R + +V Sbjct: 109 AVGCVFCMTGRSGLLRQVGSLEMVAQVVLARRR-------------------RAVKKVVF 149 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISL 243 MGMGEP N DNV +++ + G + + ST G R+ + + LA+SL Sbjct: 150 MGMGEPAHNLDNVLEAIDLLGTDGG--IGHKNLVFSTVGDPRVFERLPLQRVKPALALSL 207 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ +LR L+P E L++A Y + I +++ +L+GINDS + ++ Sbjct: 208 HSTRAELRRQLLPKAPPLSPEELVEAGEAYARRVD-YPIQYQWTLLEGINDSLEEMDGIL 266 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LKG A +NLIP+N G Y + IV + G + +R G DI CG Sbjct: 267 RLLKGRFAVMNLIPYNSMDGDAYRRPSGERIVELVRYLHSRGVLTKVRNSAGQDIDGGCG 326 Query: 364 QLKSLSKRIPKVPR 377 QL++ + + R Sbjct: 327 QLRARATQGTAERR 340 >gi|15597036|ref|NP_250530.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas aeruginosa PAO1] gi|107101272|ref|ZP_01365190.1| hypothetical protein PaerPA_01002306 [Pseudomonas aeruginosa PACS2] gi|313110540|ref|ZP_07796425.1| hypothetical protein PA39016_002410127 [Pseudomonas aeruginosa 39016] gi|81622417|sp|Q9I2Q6|Y1839_PSEAE RecName: Full=Probable RNA methyltransferase PA1839 gi|9947826|gb|AAG05228.1|AE004610_1 hypothetical protein PA1839 [Pseudomonas aeruginosa PAO1] gi|310882927|gb|EFQ41521.1| hypothetical protein PA39016_002410127 [Pseudomonas aeruginosa 39016] Length = 346 Score = 262 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 105/378 (27%), Positives = 168/378 (44%), Gaps = 50/378 (13%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVR---------GIRDFQGMSDISQEVRH 62 M ++L + L +G H + W+ R DF + VRH Sbjct: 1 MRSQDLHQRLADLGAKPLHC---GRIVRAWLQGRALDACTARQRAEDF-----LPLGVRH 52 Query: 63 LLNQHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 L Q + + E + DG+ + L+ R +E+V +P RG LCVS+ Sbjct: 53 GLPQVAAELEGIARLHSEHPASDGSSRLLVELADR-----QMVESVLLP---RGGLCVST 104 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC++ C FC TG L+R + + E++ QV+LAR R + Sbjct: 105 QVGCAVGCVFCMTGRSGLLRQVGSLEMVAQVVLARRR-------------------RAVK 145 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239 +V MGMGEP N DNV +++ + G + + ST G R+ + + L Sbjct: 146 KVVFMGMGEPAHNLDNVLEAIDLLGTDGG--IGHKNLVFSTVGDPRVFERLPRQRVKPAL 203 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH+ +LR L+P E L++A Y + I +++ +L+GINDS + Sbjct: 204 ALSLHSTRAELRRQLLPKAPPLSPEELVEAGEAYARRVD-YPIQYQWTLLEGINDSLEEM 262 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++++LKG A +NLIP+N G Y + IV + G + +R G DI Sbjct: 263 DGILRLLKGRFAVMNLIPYNSMDGDAYRRPSGERIVELVRYLHSRGVLTKVRNSAGQDID 322 Query: 360 AACGQLKSLSKRIPKVPR 377 CGQL++ + + R Sbjct: 323 GGCGQLRARATQGTAERR 340 >gi|34497708|ref|NP_901923.1| ribosomal RNA large subunit methyltransferase N [Chromobacterium violaceum ATCC 12472] gi|81655644|sp|Q7NVT9|Y2253_CHRVO RecName: Full=Probable RNA methyltransferase CV_2253 gi|34103564|gb|AAQ59925.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 352 Score = 262 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 99/382 (25%), Positives = 160/382 (41%), Gaps = 44/382 (11%) Query: 12 MMREELEEALLKIGIPQRHVRM--RTSQIWKWI----YVRGIRDFQGMSDISQEVRHLLN 65 M +E +AL IG H+ R W+ G R + VR L Sbjct: 1 MHIQEFHQALADIGARPCHIGRINRA-----WLKGLPLDAGTRHQKSEDYFPLSVREGLA 55 Query: 66 QHFSII--YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + I I + DG+ + L+ +G +E+V +P R LCVSSQVG Sbjct: 56 PIAARIEKLARIHSRHDADDGSLRLLV-----GLGDGQMVESVLLP---RDGLCVSSQVG 107 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC TG L+R L + EI QV LAR + R + +V Sbjct: 108 CAVGCTFCMTGKSGLLRQLGSAEIAAQVALARRI-------------------RPVKKVV 148 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242 MGMGEP N +NV +++ + + + ST G R+ + E+ LA+S Sbjct: 149 FMGMGEPAHNMENVLEAIQWLGTDG--NIGHKNLVFSTVGDARVFERLPQLEVKPALALS 206 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LH DLR L+P + L++ Y I +++ +L G+NDS + Sbjct: 207 LHTTRADLREQLLPRAPRIAPAELVELGEAYARRV-GYPIQYQWTLLAGVNDSQEEMDAA 265 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 ++LKG +N+IP+N G + + + + +G + +R G D+ C Sbjct: 266 ARLLKGKYGVLNIIPYNSVEGDRFQRPSSERVQAIKRYLHDNGVLTKVRDSAGQDVDGGC 325 Query: 363 GQLKSLSKRIPKVPRQEMQITG 384 GQL++ + + R + Sbjct: 326 GQLRARAAHVIDASRLRRREQA 347 >gi|254234935|ref|ZP_04928258.1| hypothetical protein PACG_00810 [Pseudomonas aeruginosa C3719] gi|126166866|gb|EAZ52377.1| hypothetical protein PACG_00810 [Pseudomonas aeruginosa C3719] Length = 346 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 105/378 (27%), Positives = 168/378 (44%), Gaps = 50/378 (13%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVR---------GIRDFQGMSDISQEVRH 62 M ++L + L +G H + W+ R DF + VRH Sbjct: 1 MRSQDLHQRLADLGAKPLHC---GRIVRAWLQGRALDACTARQRAEDF-----LPLGVRH 52 Query: 63 LLNQHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 L Q + + E + DG+ + L+ R +E+V +P RG LCVS+ Sbjct: 53 GLPQVAAELEGIARLHSEHPASDGSSRLLVELADR-----QMVESVLLP---RGGLCVST 104 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC++ C FC TG L+R + + E++ QV+LAR R + Sbjct: 105 QVGCAVGCVFCMTGRSGLLRQVGSLEMVAQVVLARRR-------------------RAVK 145 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239 +V MGMGEP N DNV +++ + G + + ST G R+ + + L Sbjct: 146 KVVFMGMGEPAHNLDNVLEAIDLLGTDGG--IGHKNLVFSTVGDPRVFERLPRQRVKPAL 203 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH+ +LR L+P E L++A Y + I +++ +L+GINDS + Sbjct: 204 ALSLHSTRAELRRQLLPKAPPLSPEELVEAGEAYARRVD-YPIQYQWTLLEGINDSLEEM 262 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++++LKG A +NLIP+N G Y + IV + G + +R G DI Sbjct: 263 DGILRLLKGRFAVMNLIPYNSMDGDAYRRPSGERIVELVRYLHSRGVLTKVRNSAGQDID 322 Query: 360 AACGQLKSLSKRIPKVPR 377 CGQL++ + + R Sbjct: 323 GGCGQLRARAAQGTAERR 340 >gi|296389768|ref|ZP_06879243.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas aeruginosa PAb1] Length = 346 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 104/374 (27%), Positives = 167/374 (44%), Gaps = 42/374 (11%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRG-----IRDFQGMSDISQEVRHLLNQ 66 M ++L + L +G H + W+ R R + VRH L Q Sbjct: 1 MRSQDLHQRLADLGAKPLHC---GRIVRAWLQGRALDACTARQPAE-DFLPLGVRHGLPQ 56 Query: 67 HFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + + E + DG+ + L+ R +E+V +P RG LCVS+QVGC Sbjct: 57 VAAELEGIARLHSEHPASDGSSRLLVELADR-----QMVESVLLP---RGGLCVSTQVGC 108 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 ++ C FC TG L+R + + E++ QV+LAR R + +V Sbjct: 109 AVGCVFCMTGRSGLLRQVGSLEMVAQVVLARRR-------------------RAVKKVVF 149 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISL 243 MGMGEP N DNV +++ + G + + ST G R+ + + LA+SL Sbjct: 150 MGMGEPAHNLDNVLEAIDLLGTDGG--IGHKNLVFSTVGDPRVFERLPRQRVKPALALSL 207 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H+ +LR L+P E L++A Y + I +++ +L+GINDS + ++ Sbjct: 208 HSTRAELRRQLLPKAPPLSPEELVEAGEAYARRVD-YPIQYQWTLLEGINDSLEEMDGIL 266 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LKG A +NLIP+N G Y + IV + G + +R G DI CG Sbjct: 267 RLLKGRFAVMNLIPYNSMDGDAYRRPSGERIVELVRYLHSRGVLTKVRNSAGQDIDGGCG 326 Query: 364 QLKSLSKRIPKVPR 377 QL++ + + R Sbjct: 327 QLRARATQGTAERR 340 >gi|224825445|ref|ZP_03698550.1| Radical SAM domain protein [Lutiella nitroferrum 2002] gi|224602366|gb|EEG08544.1| Radical SAM domain protein [Lutiella nitroferrum 2002] Length = 354 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 97/363 (26%), Positives = 159/363 (43%), Gaps = 36/363 (9%) Query: 12 MMREELEEALLKIG-IPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL---NQH 67 M ++L+ +L IG +P R++ + + G R + VR+ L Sbjct: 1 MRIQDLQHSLAAIGALPCHIGRIQRAWLKGQPLDAGTRRQKSEDYFPLSVRNGLPPIAAQ 60 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 I + + DG+ + L++ +E+V +P R LCVSSQVGC++ Sbjct: 61 VE-GLARIQSQHPAADGSLRLLVQLND-----GQMVESVLLP---RDGLCVSSQVGCAVG 111 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C+FC TG L+R L + EI QV LAR + R + +V MGM Sbjct: 112 CTFCMTGKSGLLRQLGSAEIAAQVALARRI-------------------RPVKKVVFMGM 152 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 GEP N DNV ++ + + + LST G R+ ++ + LA+SLH Sbjct: 153 GEPAHNLDNVLDAIDLLGSDG--HIGHKNLVLSTVGDPRVFERLPQQHVKPALALSLHTT 210 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 +LR L+P +Y L+ Y I +++ +L G+ND+ + +++L Sbjct: 211 RAELRAQLLPRAPRYDPAELVALGEDYARRV-GYPIQYQWTLLAGVNDTQEEMDAAVRLL 269 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 KG +N+IP+N G Y + I + G + +R G DI CGQL+ Sbjct: 270 KGKYGVLNIIPYNSVEGDHYQRPSAERIHLMKRYLHDHGVLTKVRDSAGQDIDGGCGQLR 329 Query: 367 SLS 369 + + Sbjct: 330 ARA 332 >gi|315281048|ref|ZP_07869771.1| ribosomal RNA large subunit methyltransferase N [Listeria marthii FSL S4-120] gi|313615305|gb|EFR88727.1| ribosomal RNA large subunit methyltransferase N [Listeria marthii FSL S4-120] Length = 235 Score = 262 bits (670), Expect = 7e-68, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 140/245 (57%), Gaps = 18/245 (7%) Query: 145 EEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIA 204 EI+ Q++ + + ++ ++S++V+MG+GEP N+DNV L + Sbjct: 1 GEIVEQIMNVQHY------------LDGRNLEERVSHVVVMGIGEPFDNYDNVMDFLRVI 48 Query: 205 SDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPL 263 + GL+ R IT+STSG P I E+ V LAISLHA +N+LR ++ IN+ Y + Sbjct: 49 NHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYSI 108 Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPW 321 E L++A +Y +N RITFEY+MLKG+ND ++AL L +L A +NLIP+NP Sbjct: 109 EKLMEAIHYYVNKTNR-RITFEYIMLKGVNDHKKEALELAALLGEHRHLAYVNLIPYNPV 167 Query: 322 PGC-EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS-KRIPKVPRQE 379 +Y S ++D++ F + +K++G + IR G DI AACGQL+S KR+ R + Sbjct: 168 DEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTDIDAACGQLRSKQIKRVGVRERMK 227 Query: 380 MQITG 384 + Sbjct: 228 QKQAA 232 >gi|254240233|ref|ZP_04933555.1| hypothetical protein PA2G_00875 [Pseudomonas aeruginosa 2192] gi|126193611|gb|EAZ57674.1| hypothetical protein PA2G_00875 [Pseudomonas aeruginosa 2192] Length = 346 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 105/378 (27%), Positives = 168/378 (44%), Gaps = 50/378 (13%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVR---------GIRDFQGMSDISQEVRH 62 M ++L + L +G H + W+ R DF + VRH Sbjct: 1 MRSQDLHQRLADLGAKPLHC---GRIVRAWLQGRALDACTARQRAEDF-----LPLGVRH 52 Query: 63 LLNQHFSI--IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 L Q + + E + DG+ + L+ R +E+V +P RG LCVS+ Sbjct: 53 GLPQVAAELEGIARLHSEHPASDGSSRLLVELADR-----QMVESVLLP---RGGLCVST 104 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC++ C FC TG L+R + + E++ QV+LAR R + Sbjct: 105 QVGCAVGCVFCMTGRSGLLRQVGSLEMVAQVVLARRR-------------------RAVK 145 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239 +V MGMGEP N DNV +++ + G + + ST G R+ + + L Sbjct: 146 KVVFMGMGEPAHNLDNVLEAIDLLGTDGG--IGHKNLVFSTVGDPRVFERLPRQRVKPAL 203 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH+ +LR L+P E L++A Y + I +++ +L+GINDS + Sbjct: 204 ALSLHSTRAELRRQLLPKAPPLSPEELVEAGEAYARRVD-YPIQYQWTLLEGINDSLEEM 262 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 ++++LKG A +NLIP+N G Y + IV + G + +R G DI Sbjct: 263 DGILRLLKGRFAVMNLIPYNSMDGDAYRRPSGERIVELVRYLHSRGVLTKVRNSAGQDID 322 Query: 360 AACGQLKSLSKRIPKVPR 377 CGQL++ + + R Sbjct: 323 GGCGQLRARATQGTVERR 340 >gi|209879529|ref|XP_002141205.1| radical SAM domain-containing protein [Cryptosporidium muris RN66] gi|209556811|gb|EEA06856.1| radical SAM domain-containing protein [Cryptosporidium muris RN66] Length = 529 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 101/442 (22%), Positives = 166/442 (37%), Gaps = 129/442 (29%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDG-TRKWLLRF 92 ++W+++ + +++F + DI + + + +F ++ IV + DG T K ++R Sbjct: 33 HAYRVWRYLIQKNVKEFSDIPDIPKRILEEIQLNFKLLTSNIVQSHTTDDGNTTKLIIRL 92 Query: 93 PARCIGGPVEIETVYIPEKS-------------------------RGTLCVSSQVGCSLT 127 EIETV + R +LCVSSQ+GC + Sbjct: 93 QD-----GHEIETVIMRYDRCNDVAKKSENKNLDTLEVPNLPIYRRVSLCVSSQIGCRIG 147 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C+FC TGT L +L EI+ QV A ++L + + N+V MGM Sbjct: 148 CTFCATGTLGLGGSLVTGEIIEQVYHAINILNE-----------------PVKNVVFMGM 190 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAV 246 GEPL N++ V ++ I D+ S +I++ST G I + +++ V L +SLHA Sbjct: 191 GEPLENYNEVVDAIKILLDTRLYGLSPSKISISTVGIPSGIVNMADDLPGVGLCLSLHAP 250 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLS----------------------------- 277 LR +VPI + Y + LI + + S Sbjct: 251 DQVLREQIVPIAKMYKISELIRSTDIFIAKSILNKFIKKITDQRNNRTEIKIDNLESTII 310 Query: 278 ------NARRITFEYVMLKGINDSPRDALNLIKILKGIP--------------------- 310 + + EY+++K +NDS A L +L Sbjct: 311 SPKWFNSHSTVMIEYILIKDVNDSINHAKALANLLNNTYTDKNDINMIFERCIQSERLEK 370 Query: 311 -------------------AKINLIPF---NPWPGCEYLCSDQKDIVTFSECIKRSGYSS 348 +N++P+ N P +Y + + TF + G Sbjct: 371 KVAKSFQKAFLDNYKRSNFIFVNILPYSETNATP--KYATPSEGKVRTFCRILNNYGIVV 428 Query: 349 PIRTPRGLDILAACGQLKSLSK 370 +R G DI ACGQL K Sbjct: 429 TVRRKMGQDIGGACGQLAFKGK 450 >gi|332531263|ref|ZP_08407176.1| ribosomal RNA large subunit methyltransferase N [Hylemonella gracilis ATCC 19624] gi|332039370|gb|EGI75783.1| ribosomal RNA large subunit methyltransferase N [Hylemonella gracilis ATCC 19624] Length = 357 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 101/374 (27%), Positives = 164/374 (43%), Gaps = 42/374 (11%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRD-FQGMSDI-SQEVRHLLNQHFS 69 M E L L +G RH R ++W + D + + + +R L Sbjct: 1 MQIETLRRRLRALGANPRHQ-YRVLRLWSQ--AKPQDDGPRPIENFLPASLRAALPDIAR 57 Query: 70 --IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG----TLCVSSQVG 123 + E DG+R+ ++ + +E+V +P TLCVS+QVG Sbjct: 58 DLAALATLDAEHPGEDGSRRLVV-----ALADGQLVESVLMPTAGSRQRAPTLCVSTQVG 112 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C FC TG L+R L + EI+ QV LAR + +V Sbjct: 113 CAVGCVFCMTGRAGLIRQLGSAEIVAQVALAR-------------------ASATVRRVV 153 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV----GEEIGVML 239 MGMGEP N DNV +++ + + + + ST G + +++ L Sbjct: 154 FMGMGEPAHNLDNVLEAIDLLGTAG--DIGHKNLVFSTVGDPRVFEALQSRGADQVRPAL 211 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH DLR L+P + E L+DA Y L+ A I +++ +L GINDS + Sbjct: 212 ALSLHTTRADLRAQLLPRAPRLTPEELVDAGERYARLT-AYPIQYQWTLLDGINDSDEEI 270 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 L+++L+G A +NLIP+N Y Q+ V + + + G + +R G D+ Sbjct: 271 EGLVRLLQGKYAILNLIPYNAVDDLPYRRPAQEAAVAMARRLHQRGILTKLRQSAGQDVD 330 Query: 360 AACGQLKSLSKRIP 373 CGQL++ + + Sbjct: 331 GGCGQLRARAVQAQ 344 >gi|82523823|emb|CAI78565.1| hypothetical protein [uncultured candidate division OP8 bacterium] Length = 365 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 98/367 (26%), Positives = 168/367 (45%), Gaps = 37/367 (10%) Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69 + EL AL G+ R ++ + R + + ++S ++ + + Sbjct: 26 KDLTAAELHAALAPEGVSLRL----ARRLQAAVLKRDAF-PRTLPEVSDKMLARIREEVR 80 Query: 70 IIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIP-----EKSRGTLCVSSQVG 123 + + D+ +S DG K+L + GP E V IP + C+SSQVG Sbjct: 81 LPKLVLKDKAVSARDGFAKYLFQ-----GDGPEPFEAVRIPLLHRSGDEKYIACLSSQVG 135 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L C+FC TG VRNL+A E++ QV+ + I V Sbjct: 136 CALGCAFCATGRMGFVRNLSAWEMVDQVI-----------------RLSADSEHPIRGAV 178 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAIS 242 MGMGEP+ N++ V ++ I + GL+ S + +++ST+G VP I R + + L +S Sbjct: 179 FMGMGEPMLNYEAVVRAARILCEPCGLAVSAKAVSISTAGVVPGIRRFTADRLPFRLVVS 238 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 L + + R ++P+ + YPL L++A R Y S+ +R+ + M+ G N DA+ L Sbjct: 239 LTSADSARRREVMPLEQAYPLTDLMEAVREY-HKSSGQRVILAWTMISGFNTREEDAVQL 297 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRS-GYSSPIRTPRGLDILAA 361 +++G+P +++LI N G + ++ F + + + R G DI AA Sbjct: 298 AALVRGLPIRLDLIDVNDATGR-FKPPSSLELHEFRDALSKHLKMPVARRYSGGKDIRAA 356 Query: 362 CGQLKSL 368 CG L Sbjct: 357 CGMLAGR 363 >gi|308802175|ref|XP_003078401.1| unnamed protein product [Ostreococcus tauri] gi|116056853|emb|CAL53142.1| unnamed protein product [Ostreococcus tauri] Length = 368 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 92/319 (28%), Positives = 137/319 (42%), Gaps = 45/319 (14%) Query: 62 HLLNQH---FSIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPE-KSRGTL 116 L F + + E S DG T K ++ +IE + K R TL Sbjct: 12 ERLRDGTSGFELYTTRVAHESASSDGSTTKLIVELQD-----GHKIEACVMRHAKGRTTL 66 Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176 CVSSQVGC + C+FC TGT + NL + EIL Q+ A Sbjct: 67 CVSSQVGCKMGCTFCATGTLGELGNLASFEILEQLAHANR-------------------- 106 Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-I 235 + PL N+D+V +++ + +D + S +IT+ST G +P + + + Sbjct: 107 ----------VAAPLNNYDSVIEAIGVMTDDKAFALSASKITVSTVGVIPRMRTLTRDAP 156 Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 G LA+SLHA + +LR +VP Y L+ L+ Y + EY +L G+ND Sbjct: 157 GTCLALSLHAPTQELRQKIVPTATAYKLDDLMRVLEEYLASGPKMKTMIEYCVLGGVNDD 216 Query: 296 PRDALNLIKILKGIPAKI--NLIPFNPWPG-CEYLCSDQKDIVTFSECI-KRSGYSSPIR 351 A L ++ +G KI NLIP NP ++ + + E + K+ G R Sbjct: 217 ETCAEKLGELFRGKEEKIILNLIPLNPTDTPAGHVPPTPEAVRKMMEILMKKYGLFVTRR 276 Query: 352 TPRGLDILAACGQLKSLSK 370 G DI ACGQL + Sbjct: 277 HTMGDDIAGACGQLALKTP 295 >gi|258597636|ref|XP_001348239.2| radical SAM protein, putative [Plasmodium falciparum 3D7] gi|255528761|gb|AAN36678.2| radical SAM protein, putative [Plasmodium falciparum 3D7] Length = 362 Score = 259 bits (663), Expect = 5e-67, Method: Composition-based stats. Identities = 112/376 (29%), Positives = 167/376 (44%), Gaps = 39/376 (10%) Query: 21 LLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV-DEK 79 L+K+ ++ + R QI IY I + M +I E+R L F I ++ Sbjct: 10 LIKMMERKKFEKYRLKQIMDNIYKGKIIEINKMKNIPTEIRRELKNIFHNNILSIKPIKE 69 Query: 80 ISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV 139 + D K L + +IE + S +LC+SSQ+GCS C FC TG + Sbjct: 70 LKYDRAYKVLFQCKDN-----EKIEATSLDFGSHKSLCISSQIGCSFGCKFCATGQIGIK 124 Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199 R L +EI Q+L + S G I NI MGMGEPL N V Sbjct: 125 RQLDIDEITDQLLYFQ------------------SKGVDIKNISFMGMGEPLAN-PYVFD 165 Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPIN 258 S+ +D+ S S RRI +ST G +P I ++ V LA SLH+ + R+ LVPIN Sbjct: 166 SIQFFNDNNLFSISNRRINISTVGLLPGIKKLNNIFPQVNLAFSLHSPFTEERDQLVPIN 225 Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP------AK 312 + +P + D + R+ Y+++K +NDS A L + P Sbjct: 226 KLFPFNEVFDLLDERIAKTGR-RVWISYILIKNLNDSKDHAEALSDHICKRPNNIRYLYN 284 Query: 313 INLIPFNPWPGCE--YLC-SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL- 368 + LIP+N + + D + I+ F + +K++G S R G I AACGQL + Sbjct: 285 VCLIPYNKAKNVDENFHRLDDAEKILQFEKILKKNGISFFYRNSFGYSIDAACGQLYADY 344 Query: 369 --SKRIPKVPRQEMQI 382 KR K+ + M + Sbjct: 345 EPKKRKEKIESKNMSL 360 >gi|119896414|ref|YP_931627.1| ribosomal RNA large subunit methyltransferase N [Azoarcus sp. BH72] gi|119668827|emb|CAL92740.1| probable Fe-S cluster redox enzyme [Azoarcus sp. BH72] Length = 390 Score = 258 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 97/373 (26%), Positives = 173/373 (46%), Gaps = 42/373 (11%) Query: 12 MMREELEEALLKIGIPQRHVR--MRTSQIWKWIYVRGIRDFQGMSDI--SQEVRHLLNQ- 66 M ++L + L +G H + +R W+ + + + + +R L Sbjct: 44 MRIDDLTQRLRALGAKPAHEQRVLRA-----WVQRSSMDNRRQAAKDFLPLALREALPAL 98 Query: 67 HFSIIYP-EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + + DG+ + L+ +E+V + R LCVS+Q+GC+ Sbjct: 99 TAELEGLARLRSQHPGEDGSARLLVEL-----ADGQTVESVLL---LRDGLCVSTQLGCA 150 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG + L+R L + EI+ QV+LARSL R + +V M Sbjct: 151 VGCVFCMTGREGLLRQLGSAEIVAQVVLARSL-------------------RPVKKVVFM 191 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLH 244 GMGEP N DNV +++ + + G + + ST G R+ + + LA+SLH Sbjct: 192 GMGEPAHNLDNVLEAIDLLGTAGG--IGHKNLVFSTVGDYRVFERLPRQRVKPALALSLH 249 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 DLR L+P + + L++ Y S I +++ +++G+NDSP + +++ Sbjct: 250 TTRADLRAQLLPRAPQIAPQELVELGERY-ARSTGYPIQYQWTLIEGVNDSPEEMDGIVR 308 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L+G A +NLIP+N P E+ ++ V + + R G + +R G D+ CGQ Sbjct: 309 LLRGKYALMNLIPYNSVPELEFRRPGREAAVALAAYLHRHGVLAKLRQSAGQDVEGGCGQ 368 Query: 365 LKSLSKRIPKVPR 377 L++ ++ + PR Sbjct: 369 LRARVVKMDRRPR 381 >gi|205829719|sp|A1K1N5|Y122_AZOSB RecName: Full=Probable RNA methyltransferase azo0122 Length = 347 Score = 258 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 97/373 (26%), Positives = 173/373 (46%), Gaps = 42/373 (11%) Query: 12 MMREELEEALLKIGIPQRHVR--MRTSQIWKWIYVRGIRDFQGMSDI--SQEVRHLLNQ- 66 M ++L + L +G H + +R W+ + + + + +R L Sbjct: 1 MRIDDLTQRLRALGAKPAHEQRVLRA-----WVQRSSMDNRRQAAKDFLPLALREALPAL 55 Query: 67 HFSI-IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + + DG+ + L+ +E+V + R LCVS+Q+GC+ Sbjct: 56 TAELEGLARLRSQHPGEDGSARLLVEL-----ADGQTVESVLL---LRDGLCVSTQLGCA 107 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG + L+R L + EI+ QV+LARSL R + +V M Sbjct: 108 VGCVFCMTGREGLLRQLGSAEIVAQVVLARSL-------------------RPVKKVVFM 148 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLH 244 GMGEP N DNV +++ + + G + + ST G R+ + + LA+SLH Sbjct: 149 GMGEPAHNLDNVLEAIDLLGTAGG--IGHKNLVFSTVGDYRVFERLPRQRVKPALALSLH 206 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 DLR L+P + + L++ Y S I +++ +++G+NDSP + +++ Sbjct: 207 TTRADLRAQLLPRAPQIAPQELVELGERY-ARSTGYPIQYQWTLIEGVNDSPEEMDGIVR 265 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L+G A +NLIP+N P E+ ++ V + + R G + +R G D+ CGQ Sbjct: 266 LLRGKYALMNLIPYNSVPELEFRRPGREAAVALAAYLHRHGVLAKLRQSAGQDVEGGCGQ 325 Query: 365 LKSLSKRIPKVPR 377 L++ ++ + PR Sbjct: 326 LRARVVKMDRRPR 338 >gi|71906796|ref|YP_284383.1| radical SAM family protein [Dechloromonas aromatica RCB] gi|123733307|sp|Q47GW8|Y1157_DECAR RecName: Full=Probable RNA methyltransferase Daro_1157 gi|71846417|gb|AAZ45913.1| Radical SAM [Dechloromonas aromatica RCB] Length = 357 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 86/318 (27%), Positives = 151/318 (47%), Gaps = 35/318 (11%) Query: 56 ISQEVRHLL---NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS 112 + Q +R L + S + + E DG+ + L+ +E+V +P Sbjct: 46 LPQALRTALPALQEELSALA-RVRSEHPGEDGSSRLLVEL-----ADGQTVESVLLP--- 96 Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172 R LC+S+Q+GC++ C+FC TG L+R +++ E++ QV+L R Sbjct: 97 RDGLCISTQIGCAVGCTFCMTGRDGLLRQVSSAEMVAQVVLGR----------------- 139 Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232 RK++ +V MGMGEP N DNV +++ G + + ST G R+ Sbjct: 140 --GRRKVTRVVFMGMGEPSHNMDNVLEAIDTLGTYGG--IGHKNLVFSTVGDRRVFDRLP 195 Query: 233 EEIGV-MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291 ++ V LA+SLH+ +LR L+P L++ HY + I +++ ++ G Sbjct: 196 QQRVVPALALSLHSTRAELRAELLPKAPHIDPTELVELAEHY-ARTTGYPIQYQWTLIDG 254 Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351 INDS + ++++L G A +NLIP+N +Y + I T ++ + G + +R Sbjct: 255 INDSIEEMDGIVRLLTGKYAIMNLIPYNATATLDYRRPSLEHITTLTKYLHAKGIRTTVR 314 Query: 352 TPRGLDILAACGQLKSLS 369 G D+ CGQL++ + Sbjct: 315 NSAGQDVDGGCGQLRART 332 >gi|124268797|ref|YP_001022801.1| ribosomal RNA large subunit methyltransferase N [Methylibium petroleiphilum PM1] gi|205829646|sp|A2SLX7|Y3613_METPP RecName: Full=Probable RNA methyltransferase Mpe_A3613 gi|124261572|gb|ABM96566.1| Fe-S-cluster redox enzyme,radical SAM family [Methylibium petroleiphilum PM1] Length = 352 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 93/364 (25%), Positives = 161/364 (44%), Gaps = 41/364 (11%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKW---IYVRGIRDFQGMSDISQEVRHLL-NQH 67 M E+L E L +G H + S + W + + + + + +R L Sbjct: 1 MRIEQLREHLRALGARPGHEQ---SVLRHWACALPQQRRSAREDV--LPLALREALPALE 55 Query: 68 FSI-IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + + E + DG+ + L+ + +E+V +P R LCVS+QVGC++ Sbjct: 56 AELQGLARLRSEHSAEDGSARLLV-----ALADGQTVESVLLP---RDGLCVSTQVGCAV 107 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG L+R L + EI+ QV LAR R + +V MG Sbjct: 108 GCVFCMTGQGGLLRQLGSAEIVAQVALARGH-------------------RAVKKVVFMG 148 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245 MGEP N DNV +++ + + G + + ST G R+ + + LA+SLH Sbjct: 149 MGEPAHNLDNVLEAIELLGTAGG--IGHKNLVFSTVGDERVFERLPQGAVKPALALSLHT 206 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +LR L+P + E L+ Y + + +++ ++ G+ND + ++++ Sbjct: 207 TKPELRAQLLPRAPRIAPEDLVAHGERYARAT-GYPVQYQWTLIDGVNDGDDELDGIVRL 265 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L G A +NLIP+N G + + V + + R G + +R G D+ CGQL Sbjct: 266 LAGRYAVMNLIPYNTVDGLAFQRPAWERAVAMAGALHRRGVLTKLRRSAGQDVEGGCGQL 325 Query: 366 KSLS 369 ++ + Sbjct: 326 RARA 329 >gi|86160645|ref|YP_467430.1| ribosomal RNA large subunit methyltransferase N [Anaeromyxobacter dehalogenans 2CP-C] gi|85777156|gb|ABC83993.1| Radical SAM [Anaeromyxobacter dehalogenans 2CP-C] Length = 309 Score = 256 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 102/317 (32%), Positives = 151/317 (47%), Gaps = 32/317 (10%) Query: 61 RHLLNQH---FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTL 116 R +L++ + +++ + DG RK+L P + +ETV IP + + Sbjct: 16 RSVLDEVDALATPGELRLLESVDAKDGFRKYLFELPD-----GLRVETVRIPLYDTHHVV 70 Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176 C+SSQ GC+L C+FC T L R+L + E++ Q+L R Sbjct: 71 CLSSQAGCALGCAFCATAKLGLDRSLRSWEMVSQLLAVR-----------------ADSE 113 Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEI 235 R I+ +V MG GEP N+D V + D G RRI++ST+G VP I R E Sbjct: 114 RPITGVVFMGQGEPFLNYDEVLAAAYALCDPAGARIDARRISISTAGVVPMIRRYTAEGH 173 Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 L ISL+A R L+P+ + +PL+ L++A R + L R+T EYVM+ G+N Sbjct: 174 KFRLCISLNAAMPWKRRALMPVEQGFPLDELVEAIREHAALRG--RVTLEYVMISGVNVG 231 Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRS--GYSSPIRTP 353 DA L ++L GIP ++N I N G Y D+ + F + + R G R Sbjct: 232 EEDAAALGRLLAGIPVRLNPIAVNDASGR-YRPPDEDEWNAFRDALARELPGTPVVRRYS 290 Query: 354 RGLDILAACGQLKSLSK 370 G D AACG L S + Sbjct: 291 GGQDEHAACGMLASRRR 307 >gi|255017664|ref|ZP_05289790.1| hypothetical protein LmonF_07755 [Listeria monocytogenes FSL F2-515] Length = 218 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 76/239 (31%), Positives = 128/239 (53%), Gaps = 22/239 (9%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K S+ G+ L E L G + R +Q+W W+Y + ++ F+ MS++ +E L Sbjct: 1 MEKSSIYGLTWTNLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +F + E + S DGT K+L + + IETV + ++ ++CV++QVG Sbjct: 57 LTANFVMNTLEEQVVQESTDGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC +G K R+LTA EI+ Q++ + + ++ ++S++V Sbjct: 112 CNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHY------------LDGRNLEERVSHVV 159 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAI 241 +MG+GEP N+DNV L + + GL+ R IT+STSG P I E+ V LAI Sbjct: 160 VMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLAI 218 >gi|205829721|sp|Q2IHD1|Y4229_ANADE RecName: Full=Probable RNA methyltransferase Adeh_4229 Length = 338 Score = 255 bits (652), Expect = 7e-66, Method: Composition-based stats. Identities = 102/317 (32%), Positives = 151/317 (47%), Gaps = 32/317 (10%) Query: 61 RHLLNQH---FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTL 116 R +L++ + +++ + DG RK+L P + +ETV IP + + Sbjct: 45 RSVLDEVDALATPGELRLLESVDAKDGFRKYLFELPD-----GLRVETVRIPLYDTHHVV 99 Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176 C+SSQ GC+L C+FC T L R+L + E++ Q+L R Sbjct: 100 CLSSQAGCALGCAFCATAKLGLDRSLRSWEMVSQLLAVR-----------------ADSE 142 Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEI 235 R I+ +V MG GEP N+D V + D G RRI++ST+G VP I R E Sbjct: 143 RPITGVVFMGQGEPFLNYDEVLAAAYALCDPAGARIDARRISISTAGVVPMIRRYTAEGH 202 Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 L ISL+A R L+P+ + +PL+ L++A R + L R+T EYVM+ G+N Sbjct: 203 KFRLCISLNAAMPWKRRALMPVEQGFPLDELVEAIREHAALRG--RVTLEYVMISGVNVG 260 Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRS--GYSSPIRTP 353 DA L ++L GIP ++N I N G Y D+ + F + + R G R Sbjct: 261 EEDAAALGRLLAGIPVRLNPIAVNDASGR-YRPPDEDEWNAFRDALARELPGTPVVRRYS 319 Query: 354 RGLDILAACGQLKSLSK 370 G D AACG L S + Sbjct: 320 GGQDEHAACGMLASRRR 336 >gi|307826514|ref|ZP_07656687.1| radical SAM enzyme, Cfr family [Methylobacter tundripaludum SV96] gi|307732443|gb|EFO03343.1| radical SAM enzyme, Cfr family [Methylobacter tundripaludum SV96] Length = 271 Score = 255 bits (652), Expect = 8e-66, Method: Composition-based stats. Identities = 108/282 (38%), Positives = 140/282 (49%), Gaps = 49/282 (17%) Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + CSFC+TG Q L RNLT EI+ Q L A L E +I NIV M Sbjct: 1 MNCSFCFTGKQGLKRNLTTSEIVGQFLQAWRWLAKNRPGE-----------ERILNIVFM 49 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLH 244 G GEPL NFD VKK+ I G S +RIT+ST+G++P + R +EI V LA+SLH Sbjct: 50 GQGEPLHNFDAVKKACEIFLSKHGTSIGVQRITISTAGYIPGLKRWSQEIPGVNLALSLH 109 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYP------------------------------ 274 + + RN L+PIN KYPL+ ++ P Sbjct: 110 SPFEEKRNELIPINIKYPLDEVLATIDKIPLNKKQFITYEYILIKDFNDTPDDAXXXXEV 169 Query: 275 -------GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL 327 L+ + IT+EY+++K NDSP DA L IL G A INLIPFN +PG Y Sbjct: 170 LATIDKIPLNKKQFITYEYILIKDFNDSPDDAKKLGTILAGKSAYINLIPFNSFPGSHYK 229 Query: 328 CSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369 D I F E + + IR+ +G D+LAACGQL S + Sbjct: 230 RPDLDKIEKFKEVLDTFKIPTLIRSAKGDDVLAACGQLNSKN 271 >gi|255024245|ref|ZP_05296231.1| hypothetical protein LmonocyFSL_13899 [Listeria monocytogenes FSL J1-208] Length = 220 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 87/217 (40%), Positives = 132/217 (60%), Gaps = 6/217 (2%) Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG 232 ++ ++S++V+MG+GEP N+DNV L + + GL+ R IT+STSG P I Sbjct: 2 RNLEERVSHVVVMGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFA 61 Query: 233 -EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291 E+ V LAISLHA +N+LR ++ IN+ Y +E L++A +Y +N RITFEY+MLKG Sbjct: 62 NEDFQVNLAISLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTNR-RITFEYIMLKG 120 Query: 292 INDSPRDALNLIKIL--KGIPAKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSS 348 +ND ++AL L +L A +NLIP+NP +Y S ++D++ F + +K++G + Sbjct: 121 VNDHKKEALELAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINC 180 Query: 349 PIRTPRGLDILAACGQLKSLS-KRIPKVPRQEMQITG 384 IR G DI AACGQL+S KR+ R + + Sbjct: 181 VIRREHGTDIDAACGQLRSKQIKRVGVRERMKQKQAA 217 >gi|330503480|ref|YP_004380349.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas mendocina NK-01] gi|328917766|gb|AEB58597.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas mendocina NK-01] Length = 346 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 102/375 (27%), Positives = 169/375 (45%), Gaps = 44/375 (11%) Query: 12 MMREELEEALLKIGIPQRHVRM--RTSQIWKWIYVR----GIRDFQGMSDISQEVRHLLN 65 M EL L +G +H+ R W+ + G + + + + VR L Sbjct: 1 MQLSELNHRLAALGAKPQHIGRITRA-----WLQGKALDTGTKHQKTENFLPLTVREGLP 55 Query: 66 QHFSII--YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 + + + E DG+ + L+ R +E+V +P R LC+SSQVG Sbjct: 56 AISASLEQLARVSTEHPGADGSSRLLVELADR-----QMVESVLLP---RDGLCISSQVG 107 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C+FC TG L+R L++ E++ QV+L R R + +V Sbjct: 108 CAVGCTFCMTGKSGLLRQLSSAEMVAQVVLGRRR-------------------RAVKKVV 148 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAIS 242 MGMGEP N DNV +++ + G R + ST G R+ + + LA+S Sbjct: 149 FMGMGEPAHNLDNVLEAIDLLGTEGG--IGHRNLVFSTVGDPRVFERLPRQRVRPALALS 206 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LH +LR L+P + E L++ Y + I +++ +LKGINDS ++ N+ Sbjct: 207 LHTTDAELRQRLLPRAPRIDPEQLMELGEAY-ARAIDYPIQYQWTLLKGINDSQQEMDNI 265 Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 +++ KG A +NLIP+N EY + + IV + G + +R G D+ C Sbjct: 266 LRLFKGKFAVLNLIPYNSLEADEYRRPEGERIVEMVRYLHSRGVLTKVRNSAGQDVDGGC 325 Query: 363 GQLKSLSKRIPKVPR 377 GQL++ + + R Sbjct: 326 GQLRARAVDVINTSR 340 >gi|319795747|ref|YP_004157387.1| radical SAM protein [Variovorax paradoxus EPS] gi|315598210|gb|ADU39276.1| Radical SAM domain protein [Variovorax paradoxus EPS] Length = 356 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 96/362 (26%), Positives = 155/362 (42%), Gaps = 38/362 (10%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL----NQH 67 M EL+ L + G H + R ++W R S + L + Sbjct: 1 MRIHELKRRLREAGAGPSHEQ-RILRLWSHALPRDSGRRLPHSFFPSSLMEALPAIEAEL 59 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 + I DG+ + L+ + +E+V +P R LCVSSQVGC++ Sbjct: 60 AGLAR--IHTVHPGADGSERLLV-----ALADGQTVESVLLP---RDGLCVSSQVGCAVG 109 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC TG L+R + + EI+ QV LAR RK+ +V MGM Sbjct: 110 CQFCMTGRDGLLRQVGSAEIIAQVALAR-------------------TRRKVRKVVFMGM 150 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 GEP N DNV +++ + + + + ST G R+ +E + LA+SLH Sbjct: 151 GEPAHNLDNVMEAIELLGTVG--NIGHKNLVFSTVGDPRAFERLQQERVKPALALSLHTT 208 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 LR L+P E L+DA Y + I +++ +L+G+ND + ++K+L Sbjct: 209 KAGLRKTLLPRAPNMTPEELVDAGERYARAT-GYPIQYQWALLEGVNDGQDEIEGIVKLL 267 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 G +N+IPFN G + + + + + G + +R G D+ CGQL+ Sbjct: 268 SGKYGVLNMIPFNAVEGVAFSRPSWERCEAMARTLHQRGILTKLRDSAGQDVDGGCGQLR 327 Query: 367 SL 368 + Sbjct: 328 AR 329 >gi|239820673|ref|YP_002947858.1| Radical SAM domain protein [Variovorax paradoxus S110] gi|239805526|gb|ACS22592.1| Radical SAM domain protein [Variovorax paradoxus S110] Length = 351 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 96/375 (25%), Positives = 159/375 (42%), Gaps = 38/375 (10%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL----NQH 67 M EL++ L + G H + R ++W R S + L + Sbjct: 1 MRIHELKQRLREAGAGPSHEQ-RILRLWSHALPRNSGRRLPESFFPSSLLAALPAIEAEL 59 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 + I DG+ + L+ + +E+V +P R LCVSSQVGC++ Sbjct: 60 AGLAR--IHAVHPGADGSERLLV-----ALADGQTVESVLLP---RDGLCVSSQVGCAVG 109 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC TG L+R + + EI+ QV LAR + R + +V MGM Sbjct: 110 CRFCMTGRDGLLRQVGSAEIIAQVALAR-------------------MRRPVRKVVFMGM 150 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAV 246 GEP N DNV +++ + + + + ST G R+ + + LA+SLH Sbjct: 151 GEPAHNLDNVMEAIELLGTVG--NIGHKNLVFSTVGDPRAFERLQQARVRPALALSLHTT 208 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 LR L+P E L+ A Y + I +++ +L G+ND P + ++++L Sbjct: 209 KAGLRKKLLPRAPNMTPEELVGAGERYARAT-GYPIQYQWTLLDGVNDGPEEIDGIVRLL 267 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 G +N+IPFN G + + + + + G + +R G D+ CGQL+ Sbjct: 268 SGKFGVLNMIPFNAVEGVAFSRPSLERCEQMARTLHQRGILTKLRHSAGQDVDGGCGQLR 327 Query: 367 SLSKRIPKVPRQEMQ 381 + + VP + Q Sbjct: 328 ARAAEARVVPIRFAQ 342 >gi|332527662|ref|ZP_08403707.1| ribosomal RNA large subunit methyltransferase N [Rubrivivax benzoatilyticus JA2] gi|332112064|gb|EGJ12040.1| ribosomal RNA large subunit methyltransferase N [Rubrivivax benzoatilyticus JA2] Length = 351 Score = 253 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 95/360 (26%), Positives = 153/360 (42%), Gaps = 38/360 (10%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRG--IRDFQGMSDISQEVRHLLNQHFS--I 70 EL + L +G H + W+ R Q + + L F Sbjct: 14 AELRQRLRALGAGPGHEE---RLLRNWVQCRAPTAGRGQAEHFYPRALYEALPALFDSLA 70 Query: 71 IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130 + DG + L+ +G +E+V +P R LCVS+QVGC++ C F Sbjct: 71 ALATLRSAHPGEDGAERLLV-----GLGDGQTVESVLLP---RDGLCVSTQVGCAVGCVF 122 Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 C TG L+R L + EI+ QV+LAR R +S +V MGMGEP Sbjct: 123 CMTGRDGLLRQLGSAEIVAQVVLARQR-------------------RSVSKVVFMGMGEP 163 Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSND 249 N D V +++ + + G + + ST G R+ + LA+SLH + Sbjct: 164 SHNLDAVLEAIDLLGTAGG--IGHKNLVFSTVGDTRAFERLPLGRVKPALALSLHTTKAE 221 Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309 LR L+P K E +++A Y + I +++ +L GIND + + ++L G Sbjct: 222 LRERLLPRAPKIAPEEIVEAGERYARAT-GYPIQYQWTLLDGINDGDDEVDAIARLLAGR 280 Query: 310 PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369 A +NLIP+N G + + + + R G + +R G D+ CGQL++ + Sbjct: 281 YAMMNLIPYNETEGDGFRRPPWERAAEMARALGRRGVLTRLRRSAGQDVAGGCGQLRARA 340 >gi|317405650|gb|EFV85949.1| ribosomal RNA large subunit methyltransferase N 1 [Achromobacter xylosoxidans C54] Length = 348 Score = 252 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 96/378 (25%), Positives = 162/378 (42%), Gaps = 51/378 (13%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWI---------YVRGIRDFQGMSDISQEVRH 62 M + ++ L +G H R + W+ + R ++ + +R Sbjct: 1 MRYSDFDQRLAALGAQPAH---RGRVMRAWLTGQAFDSDTWRRRFDNY-----LPLALRE 52 Query: 63 LLNQ-HFSIIYP-EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 L + + E DG+R L+ +E+V +P R LCVS+ Sbjct: 53 ALPALSAELDGLARVRSEHAGHDGSR-LLVDL-----ADGQMVESVLLP---RDGLCVST 103 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 QVGC++ C FC TG L+R + + EIL QV+LAR R + Sbjct: 104 QVGCAVGCRFCMTGKSGLIRQVASMEILAQVVLARRQ-------------------RAVK 144 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVML 239 +V MGMGEP N DNV +++++ + + + ST G + + L Sbjct: 145 KVVFMGMGEPAHNLDNVLEAINLLGTEG--NIGHKNLVFSTVGDPRVFEALPRQPVKPAL 202 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLH +LR L+P K + L++ Y + I +++ +LKG+ND + Sbjct: 203 ALSLHTTRAELREHLLPRAPKIAPQDLVEMGERYARDT-GYPIQYQWTLLKGVNDGDDEL 261 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 + ++LKG +N+IPFN G +Y + + I + R G + +R G D+ Sbjct: 262 DAIPRLLKGKFGVLNVIPFNSLEGDDYQRPETERIREIVRILHRRGVLTKVRNSAGQDVD 321 Query: 360 AACGQLKSLSKRIPKVPR 377 CGQL++ + +V R Sbjct: 322 GGCGQLRARAVGAERVVR 339 >gi|302877910|ref|YP_003846474.1| radical SAM domain-containing protein [Gallionella capsiferriformans ES-2] gi|302580699|gb|ADL54710.1| radical SAM domain protein [Gallionella capsiferriformans ES-2] Length = 336 Score = 252 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 101/361 (27%), Positives = 165/361 (45%), Gaps = 40/361 (11%) Query: 17 LEEALLKIGIPQRHVR--MRT-SQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ-HFSIIY 72 L L ++G H +R SQI Y R VR L + Sbjct: 6 LIRRLRELGSKPCHEDRLLRGWSQIAS--YDRKNSPADNF--FPAAVRAELPAIEAELTG 61 Query: 73 P-EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131 ++ E + +G + L+ +E+V +P RG LC+S+QVGC++ C FC Sbjct: 62 LAKLHGEYPAGEGVARLLVEL-----ADGQMVESVLLP---RGGLCISTQVGCAVGCVFC 113 Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191 +G L+R L + EI+ QV+LAR R++S +V MGMGEP Sbjct: 114 MSGRNGLIRQLGSAEIVAQVVLARRR-------------------REVSKVVFMGMGEPA 154 Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDL 250 N DNV +++ + + + + ST G + R+ E + LA+SLH L Sbjct: 155 HNLDNVLEAIQLLGTQG--NIGHKNLVFSTVGDLRVFERLPTETVKPALALSLHTTDAIL 212 Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310 R L+P +E L+ HY ++ + + +++ +++G+NDS + ++++L G Sbjct: 213 RARLLPSAPVIAIEELVSLAEHYARIT-SYPVQYQWTLIEGVNDSDAELDGIVRLLAGKY 271 Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSK 370 A +N IPFN G +Y + I + +KR G IR G +I ACGQL++ + Sbjct: 272 AVMNFIPFNEVDGLDYRRPSTERIAAMAYALKRQGVLVKIRDSAGQEIEGACGQLRARAI 331 Query: 371 R 371 R Sbjct: 332 R 332 >gi|156089225|ref|XP_001612019.1| radical SAM domain containing protein [Babesia bovis] gi|154799273|gb|EDO08451.1| radical SAM domain containing protein [Babesia bovis] Length = 336 Score = 252 bits (643), Expect = 8e-65, Method: Composition-based stats. Identities = 100/332 (30%), Positives = 159/332 (47%), Gaps = 38/332 (11%) Query: 31 VRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEIVDEKISCDGTRKW 88 R SQI + +Y ++ M I + VR L+ HF S++ + S D K Sbjct: 25 AGYRLSQILRSVYSAKSSNYLEMYHIPKHVREELHDHFGGSLLSLKPTTSTKS-DRACKV 83 Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 L + ++E V + + +LC+SSQVGC+ C+FC TG L RNL+ +EI Sbjct: 84 LFENRDKS-----KVEAVLLSFPTHKSLCISSQVGCAYACAFCATGRIGLKRNLSVDEIT 138 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 QVL R G +I +I MGMGEPL N NV ++++I SD+ Sbjct: 139 DQVLYFRQ------------------NGHQIDSISFMGMGEPLSN-PNVFRAINILSDND 179 Query: 209 GLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267 + S RR+ +ST G +P + ++ + V LA S+H+ D RN LVP+N+ YP + Sbjct: 180 LFAMSSRRLNISTVGILPGLKKLNRDHPHVNLAFSMHSPFTDQRNKLVPVNQLYPFRDVF 239 Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP------AKINLIPFNPW 321 + L+ RI Y+++KG ND+ A L+K++ P +NLIP+N Sbjct: 240 ELLDERIRLTGK-RIWISYILIKGENDTREHAEELVKVISNRPDEIRYLYHVNLIPYNTV 298 Query: 322 PGC-EYLCSDQKDIVTFS--ECIKRSGYSSPI 350 ++ ++ I TF + + R+ + Sbjct: 299 KSICKFERTEDNVIDTFKITKQLTRAHCLVGV 330 >gi|220919464|ref|YP_002494768.1| Radical SAM domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219957318|gb|ACL67702.1| Radical SAM domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 338 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 102/317 (32%), Positives = 151/317 (47%), Gaps = 32/317 (10%) Query: 61 RHLLNQH---FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTL 116 R +L++ + +++ + DG RK+L P + +ETV IP + + Sbjct: 45 RSVLDEVDALATPGELRLLEAVDARDGFRKYLFELPD-----GLRVETVRIPLFDTHHVV 99 Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176 C+SSQ GC+L C+FC T L R+L + E++ Q+L R Sbjct: 100 CLSSQAGCALGCAFCATAKLGLDRSLRSWEMVAQLLAVR-----------------ADSE 142 Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEI 235 R I+ +V MG GEP N+D V + D G RRI++ST+G VP I R E Sbjct: 143 RPITGVVFMGQGEPFLNYDEVLTAAYALCDPAGARIDARRISISTAGVVPMIRRYTAEGH 202 Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 L ISL+A R L+P+ + +PL+ L++A R + L R+T EYVM+ G+N Sbjct: 203 KFRLCISLNAAMPWKRRALMPVEQGFPLDELVEAIREHAALRG--RVTLEYVMISGVNVG 260 Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRS--GYSSPIRTP 353 DA L ++L GIP ++N I N G Y D+ + F + + R G R Sbjct: 261 EEDAAALGQLLAGIPVRLNPIAVNDASGR-YCPPDEDEWNAFRDALARELPGTPVVRRYS 319 Query: 354 RGLDILAACGQLKSLSK 370 G D AACG L S + Sbjct: 320 GGQDEHAACGMLASRRR 336 >gi|325114363|emb|CBZ49920.1| radical SAM enzyme, Cfr family, related [Neospora caninum Liverpool] Length = 512 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 90/297 (30%), Positives = 134/297 (45%), Gaps = 38/297 (12%) Query: 106 VYIPEKS--RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163 V P KS R T+C+S+QVGC + C+FC TGT RNL EIL Q+ A + Sbjct: 80 VARPFKSNRRATVCLSAQVGCQMGCTFCATGTMGKKRNLAEWEILEQLYHASRV------ 133 Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223 KI NIV MGMGEPL N++NV S+ + + + +ST G Sbjct: 134 -------------EKIRNIVFMGMGEPLDNYNNVVASVRFMTQPNKFAIGGHHVCISTVG 180 Query: 224 FVPNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRK-YPLEMLIDACRHYPGLSNARR 281 I ++ ++ LA+SLHA R L+P + L+ ++DA + Sbjct: 181 LPHRIRQLASDLPTCRLALSLHAPDQPTRLKLMPRAAAGWKLDRVLDATDEFVKQQKRVN 240 Query: 282 IT--------FEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPWP-GCEYLCSD 330 T EY+M++ +ND+ A L +IL + +NLIP+NP +Y S Sbjct: 241 STAMKNIGLLVEYIMIQDVNDTIDQAHALGRILQPRADAVIVNLIPYNPTEVPYDYKPST 300 Query: 331 QKDIVTFSECIK-RSGYSSPIRTPRGLDILAACGQL---KSLSKRIPKVPRQEMQIT 383 + + F ++ +R G DI +ACGQL K KVP + + + Sbjct: 301 PERVDEFLRILRQDYSIKVLVRQTLGQDIDSACGQLVVRAGKDKSGEKVPERVARAS 357 >gi|197124743|ref|YP_002136694.1| ribosomal RNA large subunit methyltransferase N [Anaeromyxobacter sp. K] gi|196174592|gb|ACG75565.1| Radical SAM domain protein [Anaeromyxobacter sp. K] Length = 338 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 102/317 (32%), Positives = 151/317 (47%), Gaps = 32/317 (10%) Query: 61 RHLLNQH---FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTL 116 R +L++ + +++ + DG RK+L P + +ETV IP + + Sbjct: 45 RSVLDEVDALATPGELRLLEAVDARDGFRKYLFELPD-----GLRVETVRIPLFDTHHVV 99 Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176 C+SSQ GC+L C+FC T L R+L + E++ Q+L R Sbjct: 100 CLSSQAGCALGCAFCATAKLGLDRSLRSWEMVSQLLAVR-----------------ADSE 142 Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEI 235 R I+ +V MG GEP N+D V + D G RRI++ST+G VP I R E Sbjct: 143 RPITGVVFMGQGEPFLNYDEVLAAAYALCDPAGARIDARRISISTAGVVPMIRRYTAEGH 202 Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 L ISL+A R L+P+ + +PL+ L++A R + L R+T EYVM+ G+N Sbjct: 203 KFRLCISLNAAMPWKRRALMPVEQGFPLDELVEAIREHAALRG--RVTLEYVMISGVNVG 260 Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRS--GYSSPIRTP 353 DA L ++L GIP ++N I N G Y D+ + F + + R G R Sbjct: 261 EEDAAALGQLLAGIPVRLNPIAVNDASGR-YRPPDEDEWNAFRDALARELPGTPIVRRYS 319 Query: 354 RGLDILAACGQLKSLSK 370 G D AACG L S + Sbjct: 320 GGQDEHAACGMLASRRR 336 >gi|217969807|ref|YP_002355041.1| ribosomal RNA large subunit methyltransferase N [Thauera sp. MZ1T] gi|217507134|gb|ACK54145.1| Radical SAM domain protein [Thauera sp. MZ1T] Length = 347 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 93/367 (25%), Positives = 162/367 (44%), Gaps = 41/367 (11%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDF---QGMSDISQEVRHLLNQ-H 67 M E+L L +G H + W+ D + + + ++ L + Sbjct: 1 MEIEQLRLRLRALGARPSHE---ARLLRAWL-QGHALDAGPRTESNRLPKALQAALPELE 56 Query: 68 FSIIYP-EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 + + E DGTR L+ +E+V +P R LCVS+QVGC++ Sbjct: 57 AELGALARVRSEHPGEDGTR-LLVEL-----ADAQAVESVLLP---RDGLCVSTQVGCAV 107 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C FC TG L+R L + EI+ QV LAR L R++ +V MG Sbjct: 108 GCVFCMTGKDGLLRQLDSGEIVAQVALARRL-------------------RRVHKVVFMG 148 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHA 245 MGEP N D V +++ + + + + LST G + R+ + + LA+SLH+ Sbjct: 149 MGEPAHNLDAVIEAIELLGTEG--ALPHKNLVLSTVGDLRVFERLPQMRVKPALALSLHS 206 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 LR L+P + L++ + S I +++ +++G+ND + ++++ Sbjct: 207 TRAALRAALLPRAPRIDPAELVELGEAWARAS-GYPIQYQWTLIEGVNDGEDELEGIVRL 265 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 L G A +N+IPFN G +Y + + + R+G + +R G D+ CGQL Sbjct: 266 LAGKYAVMNMIPFNRVDGLDYRRPAAESAAEIARRLHRAGILTKLRQSAGQDVDGGCGQL 325 Query: 366 KSLSKRI 372 ++ ++ Sbjct: 326 RAREAKL 332 >gi|153007216|ref|YP_001381541.1| ribosomal RNA large subunit methyltransferase N [Anaeromyxobacter sp. Fw109-5] gi|205829649|sp|A7HIL1|Y4379_ANADF RecName: Full=Probable RNA methyltransferase Anae109_4379 gi|152030789|gb|ABS28557.1| Radical SAM domain protein [Anaeromyxobacter sp. Fw109-5] Length = 336 Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats. Identities = 104/313 (33%), Positives = 146/313 (46%), Gaps = 29/313 (9%) Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSS 120 + + V + DG R++LL G +E V IP + T+C+SS Sbjct: 49 DRVEALATPGELRRVACTDAKDGFRRYLLEL-----GDGARVEAVRIPLFDTHHTVCLSS 103 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC+L CSFC TG L R+L A EI+ Q+L R R I+ Sbjct: 104 QAGCALGCSFCATGALGLARSLRAWEIVAQLLHVR-----------------ADSTRPIT 146 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVML 239 +V MG GEP N+D V ++ D G RRI++ST+G VP I R E L Sbjct: 147 GVVFMGQGEPFLNYDAVLEAAYTLCDPAGGRIDGRRISISTAGVVPMIRRYTAEGHKFRL 206 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 +SL+A R L+PI +PL+ L+DA R + R+T EYVM+ G+N DA Sbjct: 207 CVSLNAAIPWKRRALMPIEEGFPLDELVDAVREHAAQRG--RVTLEYVMIAGVNTGDEDA 264 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRS--GYSSPIRTPRGLD 357 L ++L GIP ++N I N G + D+ + F + + R G R G D Sbjct: 265 AALGRLLAGIPVRLNPIAVNDATGR-HRPPDEAEWNAFRDALARELPGQPIVRRYSGGQD 323 Query: 358 ILAACGQLKSLSK 370 AACG L S ++ Sbjct: 324 EHAACGMLSSRTR 336 >gi|323452575|gb|EGB08449.1| hypothetical protein AURANDRAFT_64082 [Aureococcus anophagefferens] Length = 399 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 111/361 (30%), Positives = 165/361 (45%), Gaps = 39/361 (10%) Query: 34 RTSQIWKWIYVRGIRDF---QGMSDISQEVRHLLNQHFSIIY-PEIVDEKISCDGTRKWL 89 RT +WK + R RD + ++S+ R L + D + + DGT K L Sbjct: 58 RTRSVWKAL--REGRDPCVQEETPELSRWTRETLTAAYGSGADARCADARTAEDGTTKLL 115 Query: 90 LRFPARCIGGPVEIETVYIPEKSRG----TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAE 145 + F R +E V IP+ +RG TLCVSSQVGC++ C+FC TG L+R+LT + Sbjct: 116 VEFGDRD-----AVEAVLIPQLTRGKATSTLCVSSQVGCAMGCAFCATGKMGLIRSLTDD 170 Query: 146 EILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS 205 EI Q+ LA P + +IV MGMG+ N + K + + Sbjct: 171 EIAAQLWLALRAARSVPDLP------------PLRSIVFMGMGDAGTNPKHAKAAAECFT 218 Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEM 265 D FS+ R+TLST G P+ LA S+HAV DLR LVP P + Sbjct: 219 DPDRFGFSRHRLTLSTVGPSPSAFLALAAAPGQLAWSVHAVDADLRKRLVPTAAWEPEAL 278 Query: 266 ---LIDACRHYPGLSNARR-ITFEYVMLKGINDSPRDALNLIKILKGIPA-----KINLI 316 L+DA R + + R + +L G+NDS A L + ++ + A ++LI Sbjct: 279 RDGLLDALRATRPMHSKERSVMLAVTLLAGVNDSLEHARALAEFVQPVRAETPRLIVDLI 338 Query: 317 PFNPWPGCE-YLCSDQKDIVTFSECIKRS--GYSSPIRTPRGLDILAACGQLKSLSKRIP 373 P+NP + + + F +K G +R RG D AACGQL + +++ Sbjct: 339 PYNPIDAADAFQRPSFDAVSAFQRELKAHAPGLFIGVRNARGDDEAAACGQLATNAQKRR 398 Query: 374 K 374 + Sbjct: 399 R 399 >gi|311106735|ref|YP_003979588.1| methyltransferase [Achromobacter xylosoxidans A8] gi|310761424|gb|ADP16873.1| ribosomal RNA large subunit methyltransferase N [Achromobacter xylosoxidans A8] Length = 351 Score = 249 bits (637), Expect = 5e-64, Method: Composition-based stats. Identities = 97/366 (26%), Positives = 162/366 (44%), Gaps = 43/366 (11%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVR----GIRDFQGMSDISQEVRHL---L 64 M + ++ L +G H R + W+ + G R + +R L Sbjct: 1 MRYSDFDQRLAALGALPVH---RGRILRVWLQGQALDTGTRRRSSEHFLPLALRDAVPVL 57 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + + E DG+R L+ +E+V +P R LCVS+QVGC Sbjct: 58 TAELDALA-RVRSEHAGNDGSR-LLVEL-----ADGQMVESVLLP---RDGLCVSTQVGC 107 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 ++ C FC TG L+R +T+ EIL QV+LAR R + +V Sbjct: 108 AVGCRFCMTGKSGLIRQVTSMEILAQVVLARRQ-------------------RAVKKVVF 148 Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243 MGMGEP N DNV +++ + + + + ST G + + ++ + LA+SL Sbjct: 149 MGMGEPAHNLDNVLEAIDLLGTEG--NIGHKNLVFSTVGDLRVFEALPQQRVKPALALSL 206 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H +LR L+P + E LI+ Y ++ I +++ +LK IND + ++ Sbjct: 207 HTTKAELRAHLLPRAPRIAPEELIELGERYARDTD-YPIQYQWTLLKDINDGDDELDAVV 265 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363 ++LKG +N+IPFN G +Y D + I ++ G + +R G D+ CG Sbjct: 266 RLLKGKYGVLNVIPFNSLEGDDYQRPDTERIHEIVRSLQSRGVLTKVRNSAGQDVDGGCG 325 Query: 364 QLKSLS 369 QL++ + Sbjct: 326 QLRARA 331 >gi|320104471|ref|YP_004180062.1| Radical SAM domain-containing protein [Isosphaera pallida ATCC 43644] gi|319751753|gb|ADV63513.1| Radical SAM domain protein [Isosphaera pallida ATCC 43644] Length = 373 Score = 249 bits (635), Expect = 7e-64, Method: Composition-based stats. Identities = 104/326 (31%), Positives = 151/326 (46%), Gaps = 30/326 (9%) Query: 50 FQGMSDISQEVRHLLNQHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYI 108 + + + L+Q + ++ ++S D K L R + +ETV I Sbjct: 63 WASRRRFPRRLLEGLDQ---LPRLKLESIQVSPRDRFEKLLFRTND-----GLPVETVLI 114 Query: 109 P--EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166 P +++ +LCVSSQ GC + C+FC T RNL A EI+ Q+L AR Sbjct: 115 PLHKENAVSLCVSSQSGCPMACAFCATARLSRRRNLAAWEIVDQILQAR----------- 163 Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226 + GR+++ V MGMGEP N+D V + I +GL+ + + IT+ST G V Sbjct: 164 ---ARVELQGRRVTGCVFMGMGEPFLNYDRVMTAAEILRSPIGLAVNAKAITISTVGLVA 220 Query: 227 NIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFE 285 I R E+ L+ISL A + R LVP+ + PL LI A R + RI Sbjct: 221 EIDRFTREQRPYRLSISLGAADDATRAQLVPVAARTPLRELIAAARRHQHQRGG-RINLS 279 Query: 286 YVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRS- 344 YV + +N S DA NL ++L+G+P + NLI P + TF + ++R Sbjct: 280 YVCIANLNTSETDARNLGRLLEGLPVRFNLIDV-TDPTGRFHPPSPAQWNTFRDALRRHL 338 Query: 345 -GYSSPIRTPRGLDILAACGQLKSLS 369 G R G DI AACG L S Sbjct: 339 PGQPIVRRYSGGADIQAACGTLAGTS 364 >gi|23004907|ref|ZP_00047999.1| COG0820: Predicted Fe-S-cluster redox enzyme [Magnetospirillum magnetotacticum MS-1] Length = 232 Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 93/242 (38%), Positives = 129/242 (53%), Gaps = 16/242 (6%) Query: 110 EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169 R TLCVSSQ GC + C FC TG L RNL+ EI+ QV A L D Sbjct: 1 YPQRSTLCVSSQAGCGMACPFCATGQLGLTRNLSVAEIVEQVRSAARSLAD--------- 51 Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPN 227 IP +++N+V MGMGEPL N+ V ++ GL S R IT+ST G VP Sbjct: 52 GEIPGGPARLNNLVFMGMGEPLANYKAVMGTVRRLVAPAPDGLGMSARNITVSTVGLVPA 111 Query: 228 IARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286 + ++ +E I V LA+SLHA +DLR+ LVPIN ++ ++ +DA RHY ++ R++ EY Sbjct: 112 MRKLADEGIPVTLALSLHAPDDDLRSELVPINTRWSVDETLDAARHYFEVTGR-RVSIEY 170 Query: 287 VMLKGINDSPRDALNLIKIL--KGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR 343 ++K +ND A L + L +G +N IP NP PG + SD F ++ Sbjct: 171 ALIKDMNDHAWRADLLGEKLNARGRGWVHVNPIPLNPTPGSIWTGSDPAVEAEFVARLRG 230 Query: 344 SG 345 G Sbjct: 231 HG 232 >gi|255632735|gb|ACU16719.1| unknown [Glycine max] Length = 245 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 77/243 (31%), Positives = 128/243 (52%), Gaps = 24/243 (9%) Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC TG+ NL++ EI+ Q++ A S +I N+V M Sbjct: 1 MGCNFCATGSMGFKNNLSSGEIVEQLVHA-------------------STFSQIRNVVFM 41 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLH 244 GMGEPL N+ V +++ I + + S +RIT+ST G + I ++ +++ + LA+SLH Sbjct: 42 GMGEPLNNYSAVVEAVRIMT-GLPFQLSSKRITISTVGIIHAINKLHDDLPGLNLAVSLH 100 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 A + D+R ++P R +PL L+D+ + Y S +I EY+ML G+ND A L K Sbjct: 101 APAQDIRCQIMPAARAFPLGKLMDSLQVYQRKSLQ-KIFIEYIMLDGVNDEEHHAHLLGK 159 Query: 305 ILKGIPAKINLIPFNPWPG-CEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLDILAAC 362 +L+ +NLIPFN ++ + ++ + F + ++ + +R G DI AC Sbjct: 160 LLETFQVVVNLIPFNSIGTLSQFKPTSEQKVSNFQKILRGTYNIRTTVRKQMGRDISGAC 219 Query: 363 GQL 365 GQL Sbjct: 220 GQL 222 >gi|187478042|ref|YP_786066.1| ribosomal RNA large subunit methyltransferase N [Bordetella avium 197N] gi|123752381|sp|Q2L1Z5|Y1540_BORA1 RecName: Full=Probable RNA methyltransferase BAV1540 gi|115422628|emb|CAJ49153.1| radical SAM protein [Bordetella avium 197N] Length = 351 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 86/317 (27%), Positives = 144/317 (45%), Gaps = 34/317 (10%) Query: 56 ISQEVRHLLNQ-HFSIIYP-EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR 113 + +R L + + E DG+R L+ + +E+V +P R Sbjct: 46 LPLALREALPALTAELDGLARVHSEHAGSDGSR-LLV-----ALADGQMVESVLLP---R 96 Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 LCVS+QVGC++ C FC TG L+R +T+ EIL QV+LAR Sbjct: 97 DGLCVSTQVGCAVGCRFCMTGKSGLIRQVTSMEILAQVVLARRR---------------- 140 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233 R + +V MGMGEP N +NV +++++ + + + ST G + + Sbjct: 141 ---RAVKKVVFMGMGEPAHNLENVLEAINLLGTEG--NIGHKNLVFSTVGDRRVFEALPQ 195 Query: 234 E-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 + + LA+SLH +LR L+P + L++ Y I +++ +LKG+ Sbjct: 196 QRVKPALALSLHTTKAELRARLLPRAPSIAPDELVELGERY-ARHIGYPIQYQWTLLKGV 254 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRT 352 ND + ++++LKG +N+IPFN G +Y D + I + G +R Sbjct: 255 NDGNDELDAVLRLLKGKYGVLNVIPFNSLEGDDYQRPDLERIREIVRYVHSRGVLVKVRN 314 Query: 353 PRGLDILAACGQLKSLS 369 G D+ CGQL++ + Sbjct: 315 SAGQDVDGGCGQLRARA 331 >gi|237840861|ref|XP_002369728.1| radical SAM domain-containing protein [Toxoplasma gondii ME49] gi|211967392|gb|EEB02588.1| radical SAM domain-containing protein [Toxoplasma gondii ME49] Length = 619 Score = 245 bits (627), Expect = 7e-63, Method: Composition-based stats. Identities = 82/279 (29%), Positives = 127/279 (45%), Gaps = 33/279 (11%) Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166 R T+C+S+QVGC + C+FC TGT RNL EIL Q+ A + Sbjct: 208 LYKSNRRATVCLSAQVGCQMGCTFCATGTMGKKRNLAEWEILEQLYHASRV--------- 258 Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226 I NIV MGMGEPL N+++V S+ + + R+ +ST G Sbjct: 259 ----------ETIRNIVFMGMGEPLDNYNSVVSSIRFMTQPNKFAIGGHRVCISTVGLPH 308 Query: 227 NIARVGEEIG-VMLAISLHAVSNDLRNILVPINRK-YPLEMLIDACRHYPGLSNARRIT- 283 I ++ ++ LA+SLHA R L+P + LE +++A + T Sbjct: 309 KIRQLASDLPACRLALSLHAPDQPTRLKLMPRAAAGWKLERVLEATDEFVKQQKRLNSTG 368 Query: 284 -------FEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPWP-GCEYLCSDQKD 333 EY+M++ +ND+ A L +IL + +NLIP+NP +Y S Q+ Sbjct: 369 MKNIGLLVEYIMIQDVNDTLEQAHALGRILQPRADAVIVNLIPYNPTDVPYDYKPSTQER 428 Query: 334 IVTFSECIKR-SGYSSPIRTPRGLDILAACGQLKSLSKR 371 + F +++ +R G DI +ACGQL + + Sbjct: 429 VDDFLTILRKEYAIKVLVRQTLGQDIDSACGQLVVRAGQ 467 Score = 60.7 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 6/79 (7%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCD-GTRKWLLRF 92 +IW+++ + ++DF+ + D+ + + L ++F + ++ K S D T K LL F Sbjct: 59 HAQKIWRYVVQKNVQDFREIPDLPRRLYATLAENFCLHASRVLRTKTSRDRSTTKLLLEF 118 Query: 93 PARCIGGPVEIETVYIPEK 111 P +IET + Sbjct: 119 PD-----GSQIETCIMRYG 132 >gi|95007443|emb|CAJ20664.1| hypothetical protein, conserved [Toxoplasma gondii RH] Length = 641 Score = 245 bits (626), Expect = 8e-63, Method: Composition-based stats. Identities = 82/279 (29%), Positives = 127/279 (45%), Gaps = 33/279 (11%) Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166 R T+C+S+QVGC + C+FC TGT RNL EIL Q+ A + Sbjct: 230 LYKSNRRATVCLSAQVGCQMGCTFCATGTMGKKRNLAEWEILEQLYHASRV--------- 280 Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226 I NIV MGMGEPL N+++V S+ + + R+ +ST G Sbjct: 281 ----------ETIRNIVFMGMGEPLDNYNSVVSSIRFMTQPNKFAIGGHRVCISTVGLPH 330 Query: 227 NIARVGEEIG-VMLAISLHAVSNDLRNILVPINRK-YPLEMLIDACRHYPGLSNARRIT- 283 I ++ ++ LA+SLHA R L+P + LE +++A + T Sbjct: 331 KIRQLASDLPACRLALSLHAPDQPTRLKLMPRAAAGWKLERVLEATDEFVKQQKRLNSTG 390 Query: 284 -------FEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPWP-GCEYLCSDQKD 333 EY+M++ +ND+ A L +IL + +NLIP+NP +Y S Q+ Sbjct: 391 MKNIGLLVEYIMIQDVNDTLEQAHALGRILQPRADAVIVNLIPYNPTDVPYDYKPSTQER 450 Query: 334 IVTFSECIKR-SGYSSPIRTPRGLDILAACGQLKSLSKR 371 + F +++ +R G DI +ACGQL + + Sbjct: 451 VDDFLTILRKEYAIKVLVRQTLGQDIDSACGQLVVRAGQ 489 Score = 53.4 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 6/69 (8%) Query: 44 VRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCD-GTRKWLLRFPARCIGGPVE 102 + ++DF+ + D+ + + L ++F + ++ K S D T K LL FP + Sbjct: 100 QKNVQDFREIPDLPRRLYATLAENFCLHASRVLQTKTSRDRSTTKLLLEFPD-----GSQ 154 Query: 103 IETVYIPEK 111 IET + Sbjct: 155 IETCIMRYG 163 >gi|171059188|ref|YP_001791537.1| ribosomal RNA large subunit methyltransferase N [Leptothrix cholodnii SP-6] gi|205829631|sp|B1Y6D6|Y2507_LEPCP RecName: Full=Probable RNA methyltransferase Lcho_2507 gi|170776633|gb|ACB34772.1| Radical SAM domain protein [Leptothrix cholodnii SP-6] Length = 347 Score = 245 bits (626), Expect = 9e-63, Method: Composition-based stats. Identities = 96/368 (26%), Positives = 159/368 (43%), Gaps = 48/368 (13%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIY-----VRGIRDFQGMSDISQEVR----H 62 M + + + L G H + R +IW + DF + Q VR Sbjct: 1 MRIDFIRQRLRAQGAKPCHEQ-RILRIWAQVLPTEGGRSRPDDF-----LPQAVRDAMPA 54 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 LL + + DG+ + L+ +E+V +P R LCVS+QV Sbjct: 55 LLADLDGLARLR--SQHPGEDGSARLLVEL-----ADGQTVESVLLP---RDGLCVSTQV 104 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC++ C FC TG + L+R + + EI+ QV+LAR R + + Sbjct: 105 GCAVGCVFCMTGREGLLRQVGSAEIVAQVVLARRQ-------------------RLVKKV 145 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVMLAI 241 V MGMGEP N DNV +++ + + + + ST G R+ + LA+ Sbjct: 146 VFMGMGEPAHNLDNVMEAIDFLGTTG--AIGHKNLVFSTVGDPRVFERLPLGPVKPALAL 203 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH DLR L+P + L++ Y + + I +++ +L+GIND P + Sbjct: 204 SLHTTRADLRAQLLPRAPRMDPADLVERAEAYARAT-SYPIQYQWTLLEGINDGPDEVEG 262 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 ++++L G A +N+IP+N P Y + + + R G + +R G D+ Sbjct: 263 IVRLLHGKYAVLNMIPYNTVPDLPYTRPSWEAAAALARTLHRRGILTKLRQSAGQDVEGG 322 Query: 362 CGQLKSLS 369 CGQL++ Sbjct: 323 CGQLRARE 330 >gi|221482944|gb|EEE21275.1| Radical SAM domain-containing protein, putative [Toxoplasma gondii GT1] Length = 482 Score = 245 bits (626), Expect = 9e-63, Method: Composition-based stats. Identities = 82/279 (29%), Positives = 127/279 (45%), Gaps = 33/279 (11%) Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166 R T+C+S+QVGC + C+FC TGT RNL EIL Q+ A + Sbjct: 71 LYKSNRRATVCLSAQVGCQMGCTFCATGTMGKKRNLAEWEILEQLYHASRV--------- 121 Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226 I NIV MGMGEPL N+++V S+ + + R+ +ST G Sbjct: 122 ----------ETIRNIVFMGMGEPLDNYNSVVSSIRFMTQPNKFAIGGHRVCISTVGLPH 171 Query: 227 NIARVGEEIG-VMLAISLHAVSNDLRNILVPINRK-YPLEMLIDACRHYPGLSNARRIT- 283 I ++ ++ LA+SLHA R L+P + LE +++A + T Sbjct: 172 KIRQLASDLPACRLALSLHAPDQPTRLKLMPRAAAGWKLERVLEATDEFVKQQKRLNSTG 231 Query: 284 -------FEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPWP-GCEYLCSDQKD 333 EY+M++ +ND+ A L +IL + +NLIP+NP +Y S Q+ Sbjct: 232 MKNIGLLVEYIMIQDVNDTLEQAHALGRILQPRADAVIVNLIPYNPTDVPYDYKPSTQER 291 Query: 334 IVTFSECIKR-SGYSSPIRTPRGLDILAACGQLKSLSKR 371 + F +++ +R G DI +ACGQL + + Sbjct: 292 VDDFLTILRKEYAIKVLVRQTLGQDIDSACGQLVVRAGQ 330 >gi|221503269|gb|EEE28967.1| Radical SAM domain-containing protein, putative [Toxoplasma gondii VEG] Length = 619 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 82/279 (29%), Positives = 127/279 (45%), Gaps = 33/279 (11%) Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166 R T+C+S+QVGC + C+FC TGT RNL EIL Q+ A + Sbjct: 208 LYKSNRRATVCLSAQVGCQMGCTFCATGTMGKKRNLAEWEILEQLYHASRV--------- 258 Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226 I NIV MGMGEPL N+++V S+ + + R+ +ST G Sbjct: 259 ----------ETIRNIVFMGMGEPLDNYNSVVSSIRFMTQPNKFAIGGHRVCISTVGLPH 308 Query: 227 NIARVGEEIG-VMLAISLHAVSNDLRNILVPINRK-YPLEMLIDACRHYPGLSNARRIT- 283 I ++ ++ LA+SLHA R L+P + LE +++A + T Sbjct: 309 KIRQLASDLPACRLALSLHAPDQPTRLKLMPRAAAGWKLERVLEATDEFVKQQKRLNSTG 368 Query: 284 -------FEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPWP-GCEYLCSDQKD 333 EY+M++ +ND+ A L +IL + +NLIP+NP +Y S Q+ Sbjct: 369 MKNIGLLVEYIMIQDVNDTLEQAHALGRILQPRADAVIVNLIPYNPTDVPYDYKPSTQER 428 Query: 334 IVTFSECIKR-SGYSSPIRTPRGLDILAACGQLKSLSKR 371 + F +++ +R G DI +ACGQL + + Sbjct: 429 VDDFLTILRKEYAIKVLVRQTLGQDIDSACGQLVVRAGQ 467 Score = 60.7 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 6/79 (7%) Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCD-GTRKWLLRF 92 +IW+++ + ++DF+ + D+ + + L ++F + ++ K S D T K LL F Sbjct: 59 HAQKIWRYVVQKNVQDFREIPDLPRRLYATLAENFCLHASRVLRTKTSRDRSTTKLLLEF 118 Query: 93 PARCIGGPVEIETVYIPEK 111 P +IET + Sbjct: 119 PD-----GSQIETCIMRYG 132 >gi|205829718|sp|Q5P119|Y2870_AZOSE RecName: Full=Probable RNA methyltransferase AZOSEA28700 Length = 354 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 92/364 (25%), Positives = 152/364 (41%), Gaps = 43/364 (11%) Query: 12 MMREELEEALLKIGIPQRHVR--MRTSQIWKWIYV----RGIRDFQGMSDISQEVRHLLN 65 M + + + L G H + +R W + RG + R Sbjct: 1 MRIDHIRQRLRASGAKPCHEQRVLRA-----WTHALPLDRGRCRSEDFFPAPLGARLPAL 55 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++ E DG R L+ +E+V +P R LCVS+QVGC+ Sbjct: 56 GAELAALAQVRSEHAGEDGAR-LLVEL-----ADGQTVESVLLP---RDGLCVSTQVGCA 106 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC TG L+R L + EI+ QV+LARS R + +V M Sbjct: 107 VGCAFCMTGRDGLLRQLGSAEIVAQVVLARSR-------------------RAVRKVVFM 147 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244 GMGEP N DNV +++++ G + + ST G R+ + + LA+SLH Sbjct: 148 GMGEPAHNLDNVLEAIALLGTEGG--IGHKNLVFSTVGDRRVFERLPQGSVKPALALSLH 205 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 LR L+P + L++ Y + I +++ +L G+ND + +++ Sbjct: 206 TTRPALRTKLMPRAPRLDPAELVELGETYARAT-GYPIQYQWTLLAGVNDDDEELDGIVR 264 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L G A +N IP+N G + + + + R G + +R G D+ CGQ Sbjct: 265 LLAGKYAVMNFIPYNSVAGAGFARPSWEHAAAMARYLHRRGILTKLRHSAGQDVDGGCGQ 324 Query: 365 LKSL 368 L++ Sbjct: 325 LRAR 328 >gi|162452171|ref|YP_001614538.1| hypothetical protein sce3898 [Sorangium cellulosum 'So ce 56'] gi|205829653|sp|A9EPV3|Y3898_SORC5 RecName: Full=Probable RNA methyltransferase sce3898 gi|161162753|emb|CAN94058.1| hypothetical protein sce3898 [Sorangium cellulosum 'So ce 56'] Length = 393 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 102/358 (28%), Positives = 156/358 (43%), Gaps = 51/358 (14%) Query: 61 RHLLNQHF---SIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIP--EKSRG 114 R L+ I +V+ + S D K+ R +E+V IP R Sbjct: 40 RAALDAARSAGEIRTLALVERRASAEDPFVKYAFRLED-----GATVESVRIPLERPGRY 94 Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 + CVSSQVGC+L C+FC TG L RNL A EI+ QV L R + Sbjct: 95 SACVSSQVGCALACAFCATGRMGLTRNLEAWEIVEQVRLIRR-----------DLDATVG 143 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234 G ++ ++ GMGEPL N D V +++ + S+ + R IT+ T+G I R+ E Sbjct: 144 GGARVHGVLFQGMGEPLANADRVIQAIRVLSEPSAQAIDMRNITVCTAGLPSGIRRLAAE 203 Query: 235 IG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 + V L +SL +V R +L+PI+ +PLE ++ A + S + Y +L N Sbjct: 204 VPAVRLGLSLGSVRPGKRRLLMPIDGAHPLEEVLAAVGEHARASGHAP-MWAYTLLADQN 262 Query: 294 DSPRDALNLIKILKGIPA------KINLIPFNPW--PGCEYLCSD--------------Q 331 D+ DA L + +G A +++LIP+N PG D Sbjct: 263 DTDEDAACLAALARGFAAQHGISPRLSLIPYNAIGAPGDPLPSPDGGDERGASADPFVRS 322 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK---SLSKRI--PKVPRQEMQITG 384 + F + +G S +R G D+ AACGQL + ++R + P + G Sbjct: 323 ARLDAFRAVLSAAGVGSIVRYSGGGDVGAACGQLARPSAEAQRPGGRRAPPRPGATAG 380 >gi|56478307|ref|YP_159896.1| ribosomal RNA large subunit methyltransferase N [Aromatoleum aromaticum EbN1] gi|56314350|emb|CAI08995.1| predicted Fe-S-cluster redox enzyme,radical SAM family [Aromatoleum aromaticum EbN1] Length = 397 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 92/364 (25%), Positives = 152/364 (41%), Gaps = 43/364 (11%) Query: 12 MMREELEEALLKIGIPQRHVR--MRTSQIWKWIYV----RGIRDFQGMSDISQEVRHLLN 65 M + + + L G H + +R W + RG + R Sbjct: 44 MRIDHIRQRLRASGAKPCHEQRVLRA-----WTHALPLDRGRCRSEDFFPAPLGARLPAL 98 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 ++ E DG R L+ +E+V +P R LCVS+QVGC+ Sbjct: 99 GAELAALAQVRSEHAGEDGAR-LLVEL-----ADGQTVESVLLP---RDGLCVSTQVGCA 149 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC TG L+R L + EI+ QV+LARS R + +V M Sbjct: 150 VGCAFCMTGRDGLLRQLGSAEIVAQVVLARSR-------------------RAVRKVVFM 190 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244 GMGEP N DNV +++++ G + + ST G R+ + + LA+SLH Sbjct: 191 GMGEPAHNLDNVLEAIALLGTEGG--IGHKNLVFSTVGDRRVFERLPQGSVKPALALSLH 248 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 LR L+P + L++ Y + I +++ +L G+ND + +++ Sbjct: 249 TTRPALRTKLMPRAPRLDPAELVELGETYARAT-GYPIQYQWTLLAGVNDDDEELDGIVR 307 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 +L G A +N IP+N G + + + + R G + +R G D+ CGQ Sbjct: 308 LLAGKYAVMNFIPYNSVAGAGFARPSWEHAAAMARYLHRRGILTKLRHSAGQDVDGGCGQ 367 Query: 365 LKSL 368 L++ Sbjct: 368 LRAR 371 >gi|307824710|ref|ZP_07654934.1| Radical SAM domain protein [Methylobacter tundripaludum SV96] gi|307734364|gb|EFO05217.1| Radical SAM domain protein [Methylobacter tundripaludum SV96] Length = 217 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 96/229 (41%), Positives = 129/229 (56%), Gaps = 13/229 (5%) Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 +T EI+ Q L A L E +I NIV MG GEPL NFD VKK+ Sbjct: 1 MTTSEIVGQFLQAWRWLAKNRPGE-----------ERILNIVFMGQGEPLHNFDAVKKAC 49 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRK 260 I G S ++IT+ST+G++P + R +EI V LA+SLH+ + RN L+PIN+K Sbjct: 50 EIFLSKHGTSIGVQKITISTAGYIPGLKRWSQEIPGVNLALSLHSPFEEKRNELIPINKK 109 Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 YPL+ ++ P L+ + IT+EY+++K NDSP DA L IL G A INLIPFN Sbjct: 110 YPLDEVLATIDKIP-LNKKQFITYEYILIKDFNDSPDDAKKLGTILAGKSAYINLIPFNS 168 Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369 +PG Y D I F E + + IR+ +G D+LAACGQL S + Sbjct: 169 FPGSHYKRPDLDKIEKFKEVLDTFKIPTLIRSAKGDDVLAACGQLNSKN 217 >gi|224014863|ref|XP_002297093.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220968212|gb|EED86561.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 319 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 98/320 (30%), Positives = 141/320 (44%), Gaps = 49/320 (15%) Query: 75 IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE-----------------KSRGTLC 117 +V S DGT K LLR +E+ETV IP R T+C Sbjct: 20 LVHTSTSSDGTTKLLLRLMD-----GLEVETVLIPFWADVAQKKRINEKDNSSLGRTTVC 74 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 +SSQVGC C+FC TG +R+LT +EIL Q+ A+ V+ V Sbjct: 75 ISSQVGCRQGCTFCATGRMGKLRSLTTDEILAQLFYAKK--------------VVRVVLP 120 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 I+NIV MGMG+ N D VK +++I + FS R+T+ST P + Sbjct: 121 PITNIVAMGMGDAADNVDAVKGAINIMTRRELFQFSASRVTVSTVAPSPQAFLDFADSKC 180 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 +LA S+HA ++LR LVP + YP+ L R E ++ G+NDS R Sbjct: 181 ILAWSVHATRDELRKQLVPTTK-YPMVELRQGLIDALKQRKLRTCMIEVALMDGVNDSMR 239 Query: 298 DALNLIKILK-------GIPAKINLIPFNPWPG-----CEYLCSDQKDIVTFSECIKRSG 345 +A L + L G NLIP+N Y + ++ F + ++ Sbjct: 240 EAEELAEFLTYITNEVPGSKLLCNLIPYNDIGEGAGGVVAYRKPSMEKVMAFQKRLQELS 299 Query: 346 YSSPIRTPRGLDILAACGQL 365 + +R RG + +ACGQL Sbjct: 300 VYAHVRGTRGDEENSACGQL 319 >gi|289759001|ref|ZP_06518379.1| LOW QUALITY PROTEIN: 23S rRNA methyltransferase [Mycobacterium tuberculosis T85] gi|289714565|gb|EFD78577.1| LOW QUALITY PROTEIN: 23S rRNA methyltransferase [Mycobacterium tuberculosis T85] Length = 275 Score = 237 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 88/282 (31%), Positives = 131/282 (46%), Gaps = 27/282 (9%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN- 65 L + A+ ++G+P R Q+ Y R I D + M+D+ VR + Sbjct: 17 RHLADLDAAGRASAVAELGLPA----FRAKQLAHQYYGRLIADPRQMTDLPAAVRDRIAG 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + D TRK L R E+V + R T+C+SSQ GC Sbjct: 73 AMFPNLLTASADITCDAGQTRKTLWR-----AVDGTMFESVLMRYPRRNTVCISSQAGCG 127 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG L RNL+ EIL QV + L D G ++SN+V M Sbjct: 128 MACPFCATGQGGLTRNLSTAEILEQVRAGAAALRD-------------DFGDRLSNVVFM 174 Query: 186 GMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242 GMGEPL N+ V ++ + G S R +T+ST G P I + + +GV LA+S Sbjct: 175 GMGEPLANYARVLAAVQRITARPPSGFGISARAVTVSTVGLAPAIRNLADARLGVTLALS 234 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF 284 LHA + LR+ LVP+N ++ + +DA R+Y ++ R++ Sbjct: 235 LHAPDDGLRDTLVPVNNRWRISEALDAARYYANVTGR-RVSI 275 >gi|74317969|ref|YP_315709.1| ribosomal RNA large subunit methyltransferase N [Thiobacillus denitrificans ATCC 25259] gi|123759042|sp|Q3SHI2|Y1951_THIDA RecName: Full=Probable RNA methyltransferase Tbd_1951 gi|74057464|gb|AAZ97904.1| Fe-S-cluster redox enzyme, radical SAM family [Thiobacillus denitrificans ATCC 25259] Length = 362 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 93/363 (25%), Positives = 157/363 (43%), Gaps = 38/363 (10%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDI--SQEVRHLLNQHFS 69 M EL + L G H + W+ R + + + ++ +R+ L F Sbjct: 1 MRLPELRQRLRDHGAAPCHA---GRVLRAWVAGRPLDNRRQRAEDFLPLRLRNALPGLFD 57 Query: 70 IIY--PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLT 127 + ++ E DG+ + L+R +E+V +P R +CVS+QVGC++ Sbjct: 58 ELRNLAQVHSEHPGEDGSARLLVRL-----ADGQTVESVLLP---RDGVCVSTQVGCAVG 109 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC TG L+R L+ EI+ QV+LARS R + +V MGM Sbjct: 110 CVFCMTGRAGLLRQLSGAEIVAQVVLARSR-------------------RPVRKVVFMGM 150 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAV 246 GEP N DNV ++ + G + + ST G R+ + + A+SLH Sbjct: 151 GEPAHNLDNVLDAIELLGLEGG--IGHKNLVFSTVGDRRVFERLPQSTVKPARALSLHTT 208 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 LR L+P + L++ Y + I +++ +L+GIND+ + + ++L Sbjct: 209 DRALRRRLLPRAPDIAPQELVELGEAYARRT-GYPIQYQWTLLEGINDTEAELEGIARLL 267 Query: 307 KGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366 G A +NLIP+N + + + R G + +R G D+ CGQL+ Sbjct: 268 AGRYAVMNLIPYNATEADGFNRPSWARAAEMARRLHRRGVLAKLRHSAGQDVDGGCGQLR 327 Query: 367 SLS 369 + + Sbjct: 328 ARA 330 >gi|289754992|ref|ZP_06514370.1| LOW QUALITY PROTEIN: 23S rRNA methyltransferase [Mycobacterium tuberculosis EAS054] gi|289695579|gb|EFD63008.1| LOW QUALITY PROTEIN: 23S rRNA methyltransferase [Mycobacterium tuberculosis EAS054] Length = 275 Score = 237 bits (605), Expect = 3e-60, Method: Composition-based stats. Identities = 88/282 (31%), Positives = 131/282 (46%), Gaps = 27/282 (9%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN- 65 L + A+ ++G+P R Q+ Y R I D + M+D+ VR + Sbjct: 17 RHLADLDAAGRASAVAELGLPA----FRAKQLAHQYYGRLIADPRQMTDLPAAVRDRIAG 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + D TRK L R E+V + R T+C+SSQ GC Sbjct: 73 AMFPNLLTASADITCDAGQTRKTLWR-----AVDGTMFESVLMRYSRRNTVCISSQAGCG 127 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG L RNL+ EIL QV + L D G ++SN+V M Sbjct: 128 MACPFCATGQGGLTRNLSTAEILEQVRAGAAALRD-------------DFGDRLSNVVFM 174 Query: 186 GMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAIS 242 GMGEPL N+ V ++ + G S R +T+ST G P I + + +GV LA+S Sbjct: 175 GMGEPLANYARVLAAVQRITARPPSGFGISARAVTVSTVGLAPAIRNLADARLGVTLALS 234 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF 284 LHA + LR+ LVP+N ++ + +DA R+Y ++ R++ Sbjct: 235 LHAPDDGLRDTLVPVNNRWRISEALDAARYYANVTGR-RVSI 275 >gi|255573175|ref|XP_002527517.1| catalytic, putative [Ricinus communis] gi|223533157|gb|EEF34915.1| catalytic, putative [Ricinus communis] Length = 337 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 87/313 (27%), Positives = 144/313 (46%), Gaps = 46/313 (14%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 +L+ + I V + IWK++ ++ + ++ LL F+ Sbjct: 52 PDLKREFQEANISLHFVPL----IWKYVIKNPNCEWDQIPNLPSAAYSLLKSKFTTFTST 107 Query: 75 IVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRG--------------TLCVS 119 + S DG T K L++ +E V + +R TLC+S Sbjct: 108 LHSVIESSDGVTTKLLIKLQ-----NGAFVEAVIMRYDTRLGNYGGKPRPGGPRSTLCIS 162 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 SQVGC + C FC TG+ NL++ EI+ Q++ A L +I Sbjct: 163 SQVGCKMGCKFCATGSMGFKNNLSSGEIVEQLVHATQLS-------------------QI 203 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VM 238 N+V MGMGEPL N+ + +++ + S ++IT+ST G + I ++ ++ + Sbjct: 204 RNVVFMGMGEPLNNYTALVEAIRVML-GSPFQLSPKKITVSTVGVIHAINKLQRDLPGLN 262 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 LA+SLHA D+R ++P R +PLE L+DA + Y S ++I EY+ML G+ND + Sbjct: 263 LAVSLHAPVQDIRCHIMPAARAFPLEKLMDALQVYQKNS-QQKIFIEYIMLDGVNDEEQH 321 Query: 299 ALNLIKILKGIPA 311 A L K+L+ Sbjct: 322 AHQLGKLLEAFEV 334 >gi|300858724|ref|YP_003783707.1| hypothetical protein cpfrc_01307 [Corynebacterium pseudotuberculosis FRC41] gi|300686178|gb|ADK29100.1| hypothetical protein cpfrc_01307 [Corynebacterium pseudotuberculosis FRC41] Length = 203 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 69/191 (36%), Positives = 102/191 (53%), Gaps = 7/191 (3%) Query: 186 GMGEPLCNFDNVKKSLSIASDS--MGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAIS 242 G GEPL N+ V ++ + G S+R +T+ST G P I ++ EE + V LA+S Sbjct: 14 GWGEPLANYKRVVSAVRQITSPVPEGFGISQRNVTVSTVGLAPAIRKLAEEDLSVTLAVS 73 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 LH ++LRN LVP N ++ + ++DA R+Y S R++ EY +++ +ND P A L Sbjct: 74 LHTPDDELRNTLVPTNNRWEVAEVLDAARYYADRSGR-RVSIEYALIRDVNDQPWRADML 132 Query: 303 IKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDIL 359 K L G +NLIP NP PG E+ S + F + G +R RG +I Sbjct: 133 GKKLHKALGSLVHVNLIPLNPTPGSEWDASPKDRQHEFVRRVIAQGVPCTVRDTRGQEIA 192 Query: 360 AACGQLKSLSK 370 AACGQL + + Sbjct: 193 AACGQLAAEER 203 >gi|237840113|ref|XP_002369354.1| GPI transamidase 8, putative [Toxoplasma gondii ME49] gi|211967018|gb|EEB02214.1| GPI transamidase 8, putative [Toxoplasma gondii ME49] gi|221503977|gb|EEE29654.1| GPI transamidase, putative [Toxoplasma gondii VEG] Length = 270 Score = 230 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 80/278 (28%), Positives = 127/278 (45%), Gaps = 29/278 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 GC+ CSFC G +R L+A+EI QVL Sbjct: 2 NFAARGAAGCAFNCSFCSVGKSGFLRQLSADEITDQVLFFLRQ----------------- 44 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234 G KI ++ MGMGEPL N + ++ I +D + +FS R++ +ST G +P I ++ EE Sbjct: 45 -GIKIDSVSFMGMGEPLANPK-MFDAIRILTDPLLFNFSARKLAVSTLGVLPGIKKLTEE 102 Query: 235 -IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 V LA SLH+ + RNILVP NR +P+E + D + RI Y+++KG N Sbjct: 103 HPQVNLAFSLHSPFPEERNILVPANRMFPMEEVFDLLDERLAKTGR-RIWISYILIKGRN 161 Query: 294 DSPRDALNLIKILKGIP------AKINLIPFNPWPG--CEYLCSDQKDIVTFSECIKRSG 345 ++ A L +L+ +N+IP+N G ++ F++ +++ Sbjct: 162 NTEEHAKALAALLRERRRPTRHLYHVNVIPYNTAQGVESSMQPPSAAEVNHFTDLLRKLH 221 Query: 346 YSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQIT 383 S R G I AACGQ+ + + +++ Q Sbjct: 222 LSVSRRHTIGSAIDAACGQMHAEYEVGQLTKQRKAQQA 259 >gi|291614657|ref|YP_003524814.1| radical SAM domain protein [Sideroxydans lithotrophicus ES-1] gi|291584769|gb|ADE12427.1| Radical SAM domain protein [Sideroxydans lithotrophicus ES-1] Length = 412 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 85/327 (25%), Positives = 140/327 (42%), Gaps = 72/327 (22%) Query: 97 IGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARS 156 + +E+V +P RG LCVS+QVGC++ C FC +G L+R L + EI+ QV+LAR Sbjct: 100 LHDGQMVESVLLP---RGGLCVSTQVGCAVGCVFCMSGRDGLLRQLGSAEIVAQVVLARK 156 Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216 R +S +V MGMGEP N DNV +++ + + + Sbjct: 157 R-------------------RAVSKVVFMGMGEPAHNLDNVLEAIELLGTQG--NIGHKN 195 Query: 217 ITLSTSGFVPNIARVGEEI----------------------------------------- 235 + LST G + R+ E + Sbjct: 196 LVLSTVGDLRVFERLMEGLTHKPSPQPSGGTTDHSTRPSENNGQVAGHPACGRGGNRERQ 255 Query: 236 ------GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 LA+SLH LR L+P + P+E L++ Y + + +++ ++ Sbjct: 256 SSIAAVKPALALSLHTTDEVLRTRLLPQAPRIPVEELVERAEIYARAT-GYPVQYQWTLI 314 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSP 349 +G+NDS + ++++LKG A +N IPFN G Y + I + + G S Sbjct: 315 EGVNDSDAELARIVQLLKGKYAIMNFIPFNEVDGLTYRRPSGERIAAMAYALNGQGIYSR 374 Query: 350 IRTPRGLDILAACGQLKSLSKRIPKVP 376 +R G +I ACGQL++ + + + Sbjct: 375 VRDSAGQEIEGACGQLRARAAKTRESA 401 >gi|221483043|gb|EEE21367.1| GPI transamidase, putative [Toxoplasma gondii GT1] Length = 270 Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats. Identities = 80/277 (28%), Positives = 127/277 (45%), Gaps = 29/277 (10%) Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175 GC+ CSFC G +R L+A+EI QVL Sbjct: 3 FAARGAAGCAFNCSFCSVGKSGFLRQLSADEITDQVLFFLRQ------------------ 44 Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE- 234 G KI ++ MGMGEPL N + ++ I +D + +FS R++ +ST G +P I ++ EE Sbjct: 45 GIKIDSVSFMGMGEPLANPK-MFDAIRILTDPLLFNFSARKLAVSTLGVLPGIKKLTEEH 103 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 V LA SLH+ + RNILVP NR +P+E + D + RI Y+++KG N+ Sbjct: 104 PQVNLAFSLHSPFPEERNILVPANRMFPMEEVFDLLDERLAKTGR-RIWISYILIKGRNN 162 Query: 295 SPRDALNLIKILKGIP------AKINLIPFNPWPG--CEYLCSDQKDIVTFSECIKRSGY 346 + A L +L+ +N+IP+N G ++ F++ +++ Sbjct: 163 TEEHAKALAALLRERRRPTRHLYHVNVIPYNTAQGVESSMQPPSATEVNHFTDLLRKLHL 222 Query: 347 SSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQIT 383 S R G I AACGQ+ + + +++ Q Sbjct: 223 SVSRRHTIGSAIDAACGQMHAEYEVGQLTKQRKAQQA 259 >gi|289803429|ref|ZP_06534058.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 182 Score = 229 bits (583), Expect = 9e-58, Method: Composition-based stats. Identities = 91/192 (47%), Positives = 115/192 (59%), Gaps = 12/192 (6%) Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168 PE R TLCVSSQVGC+L C FC T Q RNL EI+ QV A ++G Sbjct: 1 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG--------- 51 Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228 + R I+N+VMMGMGEPL N NV ++ I D G SKRR+TLSTSG VP + Sbjct: 52 -AAKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPAL 110 Query: 229 ARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEY 286 ++G+ I V LAISLHA ++ +R+ +VPIN+KY +E + A R Y SNA R+T EY Sbjct: 111 DKLGDMIDVALAISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEY 170 Query: 287 VMLKGINDSPRD 298 VML +ND Sbjct: 171 VMLDHVNDGTEH 182 >gi|289524569|ref|ZP_06441423.1| radical SAM enzyme, Cfr family [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502191|gb|EFD23355.1| radical SAM enzyme, Cfr family [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 197 Score = 226 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 81/219 (36%), Positives = 124/219 (56%), Gaps = 23/219 (10%) Query: 38 IWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCI 97 I +WIY + + DFQ M+++S+E+R L + P + E+ S DGT+K+L +F Sbjct: 1 ICQWIYQKKVFDFQEMTNLSKELRGKLADAVMVAPPILTREETSKDGTKKYLWQFHD--- 57 Query: 98 GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157 +E+V + ++ R T C+S+QVGC L C+FC +G VR+L+A EI+ Q L L Sbjct: 58 --GERVESVLLTQEGRLTACLSTQVGCPLACAFCASGQGGFVRDLSAGEIVGQFLAMEKL 115 Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217 G R I N+V MGMGEP N ++V KS+ I ++ RRI Sbjct: 116 AG-----------------RDIDNVVYMGMGEPFLNQESVFKSIKILNEPKMRGLGIRRI 158 Query: 218 TLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLRNILV 255 T+ST+G VP I + E ++ V L++SLHA ++ LR+ L+ Sbjct: 159 TISTAGIVPGILALAEAQMPVKLSVSLHAPNDRLRSKLM 197 >gi|146319331|ref|YP_001199043.1| Fe-S-cluster redox protein [Streptococcus suis 05ZYH33] gi|145690137|gb|ABP90643.1| Predicted Fe-S-cluster redox enzyme [Streptococcus suis 05ZYH33] Length = 208 Score = 226 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 63/210 (30%), Positives = 112/210 (53%), Gaps = 21/210 (10%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + L + +L+ G + R +QIW+W+Y ++ F M+++ + + L Sbjct: 2 KPSIYAFSQANLVDWILENG----EKKFRATQIWEWLYRSRVQSFAEMTNLPKSLIEKLE 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 +HF + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 EHFVVNPLKQRIVQESKDGTIKYLFELPDGML-----IETVLMHQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G R+LT+ EI+ Q++L + L + + ++S+IV+M Sbjct: 113 IGCTFCASGLIPKQRDLTSGEIVAQIMLVQKYLDE------------RNQNERVSHIVVM 160 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKR 215 G+GEPL N+DNV L + +D GL+ R Sbjct: 161 GIGEPLDNYDNVMTFLRVVNDDKGLAIGAR 190 >gi|70948819|ref|XP_743877.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56523585|emb|CAH84934.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi] Length = 379 Score = 226 bits (576), Expect = 5e-57, Method: Composition-based stats. Identities = 110/371 (29%), Positives = 161/371 (43%), Gaps = 58/371 (15%) Query: 21 LLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKI 80 ++K+ R+ + R QI IY I + M +I ++R L FS I K Sbjct: 10 IVKMIERNRYEKYRLKQITDNIYKGKIININNMKNIPTDIRKNLKSIFSENILSIKPIKE 69 Query: 81 SC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV 139 D K L + +IE + S +LC+SSQ+GCS C FC TG + Sbjct: 70 DKYDRAYKILFECKDK-----EKIEATALDFGSHTSLCISSQIGCSFGCKFCATGQIGIK 124 Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199 R L +EI Q+L + S I N+ MGMGEPL N NV + Sbjct: 125 RQLELDEITDQLLYFQ------------------SKNVNIKNVSFMGMGEPLAN-PNVFE 165 Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPIN 258 ++ ++S S S RRI +ST G +P I ++ E V L+ SLH+ + R+ LVPIN Sbjct: 166 AIRFFNNSNFFSLSSRRINISTVGLLPGIKKLNELFPQVNLSFSLHSPFTEERDQLVPIN 225 Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK-ILKGIPAK----- 312 + +P ++D ++ R+ Y+++K +NDS A L ILK P+ Sbjct: 226 KLFPFHEVLDLLDDRIAKTSR-RVWISYILIKDVNDSTDHAEALCDHILKRPPSVRYLYN 284 Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFS-----ECIKRSGY---SSPI----------RTPR 354 I LIP+N G + I F + +K+ + I R Sbjct: 285 ICLIPYNK--GITFHR-----ISFFYRYSIIKIVKKQMIYTKYTTINMFFFLSFLNRNSF 337 Query: 355 GLDILAACGQL 365 G I AACGQL Sbjct: 338 GYAIDAACGQL 348 >gi|325849079|ref|ZP_08170571.1| putative 23S rRNA m2A2503 methyltransferase [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480324|gb|EGC83387.1| putative 23S rRNA m2A2503 methyltransferase [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 223 Score = 225 bits (574), Expect = 8e-57, Method: Composition-based stats. Identities = 79/239 (33%), Positives = 123/239 (51%), Gaps = 20/239 (8%) Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 L R+L+A EI+ ++ L D ISNIV+MG+GEPL N Sbjct: 4 QKNGLERSLSAAEIIEEIYLLERENSD------------------ISNIVVMGIGEPLDN 45 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRN 252 F N++K + I +D G + S R IT+ST G V I + + LA+SLH ++ R Sbjct: 46 FSNIEKFIKIITDQKGRNLSHRSITVSTVGLVDKIYDLANLGYDINLAVSLHYAFDEKRM 105 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312 +P +KY ++ +I AC +Y + R+++EYV++ G+N+ D L + KG Sbjct: 106 AYMPSGKKYKIKDIIKACDYYLEKTKR-RVSYEYVVIDGVNNLREDIDQLENLFKGKNIH 164 Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 INLIP NP +Y + + F + + + G ++ IR G DI A+CGQL++ R Sbjct: 165 INLIPLNPIEEFKYSKTKNNVMDQFQQKLTKKGLNATIRRSMGSDIDASCGQLRNNYAR 223 >gi|82794611|ref|XP_728508.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23484893|gb|EAA20073.1| unnamed protein product [Plasmodium yoelii yoelii] Length = 351 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 105/363 (28%), Positives = 163/363 (44%), Gaps = 41/363 (11%) Query: 12 MMREELEEA-----LLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 M ++E + ++K+ ++ + R QI IY I + M +I ++R L Sbjct: 1 MTYNKMERSKRYMNIVKMIERNKYEKYRLKQITDNIYKGKIININNMKNIPTDIRKNLKN 60 Query: 67 HFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 FS I K D K L + +IE + S +LC+SSQ+GCS Sbjct: 61 IFSENILSIKPIKEDKYDRAYKILFECKDK-----EKIEATALDFGSHTSLCISSQIGCS 115 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 C FC TG + R L +EI Q+L + S I N+ M Sbjct: 116 FGCKFCATGQIGIKRQLELDEITDQLLYFQ------------------SKNVNIKNVSFM 157 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244 GMGEPL N NV +++ ++S S S RRI +ST G +P I ++ E V L+ SLH Sbjct: 158 GMGEPLAN-PNVFEAIRFFNNSNFFSLSSRRINISTVGLLPGIKKLNELFPQVNLSFSLH 216 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 + + R+ LVPIN+ +P ++D +N R+ Y+++K +NDS A L Sbjct: 217 SPFTEERDQLVPINKLFPFHEVLDLLDDRIAKTNR-RVWISYILIKDVNDSTDHAEALCD 275 Query: 305 -ILKGIPAK-----INLIPFNPWPGC--EYLC-SDQKDIVTFSECIKRSGYSSPIRTPRG 355 I+K P+ I LIP+N E+ +++ I F + +++ S R Sbjct: 276 HIIKRPPSVRYLYNICLIPYNKAKNVCDEFQRLDEEEKIRQFEKILRKHRISFFYRYKIL 335 Query: 356 LDI 358 LDI Sbjct: 336 LDI 338 >gi|323449897|gb|EGB05782.1| hypothetical protein AURANDRAFT_30404 [Aureococcus anophagefferens] Length = 315 Score = 222 bits (566), Expect = 7e-56, Method: Composition-based stats. Identities = 91/321 (28%), Positives = 135/321 (42%), Gaps = 46/321 (14%) Query: 76 VDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIP--------EKSRGTLCVSSQVGCSL 126 ++E +S DGT K L+R ++E V IP +++ T+CVSSQVGC Sbjct: 14 IEESVSAPDGTLKLLVRL-----ADGADVEAVVIPPSGGPAKNARAKSTVCVSSQVGCRQ 68 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+FC TG L R+L+ EIL + N+V MG Sbjct: 69 ACAFCATGKMGLARSLSGVEIL-------------AQIALATAAARAARLPVPRNVVFMG 115 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI--ARVGEEIGVMLAISLH 244 MGEP N V+ +++ D ++ + R+T+ST G P + G +A SLH Sbjct: 116 MGEPGDNVGAVRDAVAALVDGARFAYGRDRVTVSTVGPAPGVFAELFGYADAPAVAWSLH 175 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNL 302 + +LR LVP + + L D +R E V++ G+ND P DA + Sbjct: 176 SADEELRRTLVPTAK-HSAAELRDGLVRALEARPEKRRKAVLEVVLIAGVNDGPGDADAI 234 Query: 303 IKILKGI------------PAKINLIPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSS 348 +K I +NLIP+N + + + F ++ G S Sbjct: 235 AAFVKPIEAACTGTAGGRTGVLVNLIPYNANESVDPSFEPPAPDAVQAFQARLRDRGVWS 294 Query: 349 PIRTPRGLDILAACGQLKSLS 369 R RG D AACGQL + S Sbjct: 295 SKRAERGADDAAACGQLATAS 315 >gi|194693462|gb|ACF80815.1| unknown [Zea mays] Length = 206 Score = 220 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 70/192 (36%), Positives = 106/192 (55%), Gaps = 6/192 (3%) Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISL 243 MGMGEP+ N +V ++ + L +R +T+ST G I + ++ LA+SL Sbjct: 1 MGMGEPMMNLKSVLEAHQCFNKE--LKIGQRMMTISTVGVPNTIKMLASHKLQSTLAVSL 58 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA + LR +VP + YPL L+D C+ Y L RR++FEY +L GIND A L Sbjct: 59 HAPNQKLRETIVPSAKSYPLGALMDDCKSYF-LETGRRVSFEYTLLAGINDEKEHAEELA 117 Query: 304 KILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 ++L+ G +NLIP+NP G EY +K + F + ++ + +R RGLD AA Sbjct: 118 ELLRMCGGGYHVNLIPYNPIEGSEYKRPYRKVVQAFVDALEARKITVSVRRTRGLDANAA 177 Query: 362 CGQLKSLSKRIP 373 CGQL++ ++ P Sbjct: 178 CGQLRNEFQKNP 189 >gi|303258097|ref|ZP_07344105.1| radical SAM enzyme, Cfr family [Burkholderiales bacterium 1_1_47] gi|302859116|gb|EFL82199.1| radical SAM enzyme, Cfr family [Burkholderiales bacterium 1_1_47] Length = 350 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 84/321 (26%), Positives = 139/321 (43%), Gaps = 35/321 (10%) Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + ++ S GTR W+L+ IE V +P R +CVS+QVGC+ Sbjct: 61 EEYLANQLTAQEKAESETGTR-WVLK-----AYDGQLIECVLLP---REGVCVSTQVGCA 111 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG L+R LT E+ QV A + +V+M Sbjct: 112 VGCVFCMTGKSGLIRQLTDLEVAGQVQYAMR-------------------NAPVKKVVLM 152 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244 GMGEP N +V ++ G + + +ST G + E +I LAISLH Sbjct: 153 GMGEPSHNLRSVFSAVEHIVRYSG--IGYKEVVISTVGDKRLFKALMESQIKPALAISLH 210 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 + ++ R L+P + ++ +++ Y + I +++ ++ G+ND + L Sbjct: 211 SAMDEKRRSLLPRAAELTVKEILEFGAKYAEV-GKYPIQYQWTLINGVNDGVDEIEALAP 269 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 + A +N+IP N G Y + I E + +G R D+ CGQ Sbjct: 270 L-WSRQAILNMIPVNAVEGSPYKRPSAEQIERIKEACRANGILLKFRDSAAQDVDGGCGQ 328 Query: 365 LKSLS-KRIPKV-PRQEMQIT 383 L++ + KR P + P QE++I Sbjct: 329 LRARALKRKPAIQPAQELKIE 349 >gi|330998689|ref|ZP_08322418.1| putative 23S rRNA m2A2503 methyltransferase [Parasutterella excrementihominis YIT 11859] gi|329576428|gb|EGG57940.1| putative 23S rRNA m2A2503 methyltransferase [Parasutterella excrementihominis YIT 11859] Length = 341 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 84/321 (26%), Positives = 139/321 (43%), Gaps = 35/321 (10%) Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + + ++ S GTR W+L+ IE V +P R +CVS+QVGC+ Sbjct: 52 EEYLANQLTAQEKAESETGTR-WVLK-----AYDGQLIECVLLP---REGVCVSTQVGCA 102 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG L+R LT E+ QV A + +V+M Sbjct: 103 VGCVFCMTGKSGLIRQLTDLEVAGQVQYAMR-------------------NAPVKKVVLM 143 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLH 244 GMGEP N +V ++ G + + +ST G + E +I LAISLH Sbjct: 144 GMGEPSHNLRSVFSAVEHIVRYSG--IGYKEVVISTVGDKRLFKALMESQIKPALAISLH 201 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 + ++ R L+P + ++ +++ Y + I +++ ++ G+ND + L Sbjct: 202 SAMDEKRRSLLPRAAELTVKEILEFGAKYAEV-GKYPIQYQWTLINGVNDGVDEIEALAP 260 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 + A +N+IP N G Y + I E + +G R D+ CGQ Sbjct: 261 L-WSRQAILNMIPVNAVEGSPYKRPSAEQIERIKEACRANGILLKFRDSAAQDVDGGCGQ 319 Query: 365 LKSLS-KRIPKV-PRQEMQIT 383 L++ + KR P + P QE++I Sbjct: 320 LRARALKRKPAIQPAQELKIE 340 >gi|148662723|ref|YP_001284246.1| hypothetical protein MRA_2904 [Mycobacterium tuberculosis H37Ra] gi|148506875|gb|ABQ74684.1| hypothetical protein MRA_2904 [Mycobacterium tuberculosis H37Ra] Length = 195 Score = 219 bits (558), Expect = 6e-55, Method: Composition-based stats. Identities = 67/188 (35%), Positives = 104/188 (55%), Gaps = 7/188 (3%) Query: 187 MGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243 GEPL N+ V ++ + G S R +T+ST G P I + + +GV LA+SL Sbjct: 7 WGEPLANYARVLAAVQRITARPPSGFGISARAVTVSTVGLAPAIRNLADARLGVTLALSL 66 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA + LR+ LVP+N ++ + +DA R+Y ++ R++ EY +++ +ND P A L Sbjct: 67 HAPDDGLRDTLVPVNNRWRISEALDAARYYANVTGR-RVSIEYALIRDVNDQPWRADLLG 125 Query: 304 KILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 K L G A +NLIP NP PG ++ S + F + ++ G S +R RG +I A Sbjct: 126 KRLHRVLGPLAHVNLIPLNPTPGSDWDASPKPVEREFVKRVRAKGVSCTVRDTRGREISA 185 Query: 361 ACGQLKSL 368 ACGQL ++ Sbjct: 186 ACGQLAAV 193 >gi|15610016|ref|NP_217395.1| hypothetical protein Rv2879c [Mycobacterium tuberculosis H37Rv] gi|1403399|emb|CAA98355.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv] Length = 189 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 67/188 (35%), Positives = 104/188 (55%), Gaps = 7/188 (3%) Query: 187 MGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243 GEPL N+ V ++ + G S R +T+ST G P I + + +GV LA+SL Sbjct: 1 WGEPLANYARVLAAVQRITARPPSGFGISARAVTVSTVGLAPAIRNLADARLGVTLALSL 60 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA + LR+ LVP+N ++ + +DA R+Y ++ R++ EY +++ +ND P A L Sbjct: 61 HAPDDGLRDTLVPVNNRWRISEALDAARYYANVTGR-RVSIEYALIRDVNDQPWRADLLG 119 Query: 304 KILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 K L G A +NLIP NP PG ++ S + F + ++ G S +R RG +I A Sbjct: 120 KRLHRVLGPLAHVNLIPLNPTPGSDWDASPKPVEREFVKRVRAKGVSCTVRDTRGREISA 179 Query: 361 ACGQLKSL 368 ACGQL ++ Sbjct: 180 ACGQLAAV 187 >gi|289571070|ref|ZP_06451297.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289544824|gb|EFD48472.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] Length = 189 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 68/188 (36%), Positives = 105/188 (55%), Gaps = 7/188 (3%) Query: 187 MGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISL 243 MGEPL N+ V ++ + G S R +T+ST G P I + + +GV LA+SL Sbjct: 1 MGEPLANYARVLAAVQRITARPPSGFGISARAVTVSTVGLAPAIRNLADARLGVTLALSL 60 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA + LR+ LVP+N ++ + +DA R+Y ++ R++ EY +++ +ND P A L Sbjct: 61 HAPDDGLRDTLVPVNNRWRISEALDAARYYANVTGR-RVSIEYALIRDVNDQPWRADLLG 119 Query: 304 KILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360 K L G A +NLIP NP PG ++ S + F + ++ G S +R RG +I A Sbjct: 120 KRLHRVLGPLAHVNLIPLNPTPGSDWDASPKPVEREFVKRVRAKGVSCTVRDTRGREISA 179 Query: 361 ACGQLKSL 368 ACGQL ++ Sbjct: 180 ACGQLAAV 187 >gi|147867042|emb|CAN80514.1| hypothetical protein VITISV_023658 [Vitis vinifera] Length = 206 Score = 216 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 68/192 (35%), Positives = 108/192 (56%), Gaps = 7/192 (3%) Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-EEIGVMLAISL 243 MGMGEP+ N +V ++ + + +R IT+S+ G I ++ ++ LAISL Sbjct: 1 MGMGEPMLNLKSVIEAHRCLNKD--VQIGQRMITISSVGVPNTIKKLASYKLQSTLAISL 58 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 HA + LR +VP + YPL+ ++ CR Y L +RR++FEY +L G+ND+ A+ L Sbjct: 59 HAPNQKLRETIVPSAKSYPLDAIMKDCRDYF-LETSRRVSFEYTLLAGVNDAVEHAIELA 117 Query: 304 KILK--GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 ++L G +NLIPFNP G E+ K + F+ ++ + +R RGLD AA Sbjct: 118 ELLHEWGPGYHVNLIPFNPIEGSEFQRPYNK-VQAFAAALESRKVTVSVRQTRGLDASAA 176 Query: 362 CGQLKSLSKRIP 373 CGQL++ ++ P Sbjct: 177 CGQLRNEFQKSP 188 >gi|223993285|ref|XP_002286326.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220977641|gb|EED95967.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 438 Score = 216 bits (551), Expect = 5e-54, Method: Composition-based stats. Identities = 86/315 (27%), Positives = 133/315 (42%), Gaps = 44/315 (13%) Query: 75 IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRG--TLCVSSQVGCSLTCSFCY 132 + K+S DGT K LL+ + +E+E+V IP +G TLCVS G + Sbjct: 150 LSHMKVSSDGTTKLLLKM----VKDGLEVESVIIPWMDKGFSTLCVSWAAGKDVHSVL-- 203 Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192 ++ + +V+ + + NIV MGMGEP Sbjct: 204 -------PDMYYASKICRVV-------------ESIPGNENKALPPVDNIVFMGMGEPAD 243 Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRN 252 N D V ++++ D + +IT+ST P+ LA S+HAV + LR Sbjct: 244 NADAVVRAVNTLVDRRMFGVGQSKITISTVAPDPSAFATLGSAPAALAWSVHAVDDSLRR 303 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNA--RRITFEYVMLKGINDSPRDALNLIKI----- 305 LVP + Y +E L L + RR E ++K +NDSP DA L + Sbjct: 304 QLVPTTK-YSMEELRAGLVKALSLRSNKLRRTMLEVALMKDVNDSPDDARLLSEFAMSIM 362 Query: 306 --LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSG------YSSPIRTPRGLD 357 ++G +NLIPFN Y + ++ F + + SG +RT RG + Sbjct: 363 KEVRGSKIVVNLIPFNDIGHPTYRTPSMERVLEFQKIVVESGDNCDTQVLCYVRTTRGDE 422 Query: 358 ILAACGQLKSLSKRI 372 +ACGQL + K++ Sbjct: 423 ESSACGQLATKKKQV 437 >gi|156102374|ref|XP_001616880.1| Fe-S-cluster redox enzyme [Plasmodium vivax SaI-1] gi|148805754|gb|EDL47153.1| Fe-S-cluster redox enzyme, putative [Plasmodium vivax] Length = 337 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 93/347 (26%), Positives = 149/347 (42%), Gaps = 41/347 (11%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 M + +LLK+ + R QI +Y I M ++ +R + + FS Sbjct: 1 MEKSRRYASLLKMVERNGFEKYRLQQILDNMYKAKITSVSQMKNVPTNIRREMKKIFSEN 60 Query: 72 YPEIVD-EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130 I ++ D K L + +IE + S +LC+SSQ+GCS C F Sbjct: 61 LLSIKPLKEYKFDRAYKVLFECKDK-----EKIEATSLDFGSHKSLCISSQIGCSFACKF 115 Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 C TG + R L +EI Q+L + S + N+ MGMGEP Sbjct: 116 CATGQIGIKRQLELDEITDQLLYFQ------------------SKNEHVRNVSFMGMGEP 157 Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSND 249 L N +V +S+ + + S RRI +ST G +P I ++ + V L+ SLH+ ++ Sbjct: 158 LAN-PHVFESIHFFNHVNLFALSSRRINISTVGLLPGIKKLNDLFPQVNLSFSLHSPFSE 216 Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309 R+ LVPIN+ +P ++D + R+ Y++LK +NDS A L + Sbjct: 217 ERDQLVPINKLFPFHEVLDLLDSRITRTGR-RVWISYILLKDVNDSKDHAEALCSHICQR 275 Query: 310 P------AKINLIPFNPWPGCE--YLCSDQKD-IVTFSECIKRSGYS 347 P + LIP+N + + D++D I+ F G S Sbjct: 276 PRAVRYLYNVCLIPYNKAKNVDENFHRVDEEDKILQF-----EHGIS 317 >gi|319942260|ref|ZP_08016575.1| radical SAM domain-containing protein [Sutterella wadsworthensis 3_1_45B] gi|319804133|gb|EFW01033.1| radical SAM domain-containing protein [Sutterella wadsworthensis 3_1_45B] Length = 392 Score = 213 bits (542), Expect = 4e-53, Method: Composition-based stats. Identities = 74/292 (25%), Positives = 124/292 (42%), Gaps = 27/292 (9%) Query: 96 CIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR 155 + IE V +P R +CVS+Q+GC++ C FC TG LVR L+ EI Sbjct: 115 TLADGQTIEEVLLP---RRGVCVSTQMGCAVGCVFCMTGKGGLVRQLSDMEI-------- 163 Query: 156 SLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR 215 + + + + +V MGMGEP N DNV ++ + G + Sbjct: 164 ----------AAQAALARRLRPETKKVVFMGMGEPSHNLDNVLRAAEFLALYGGFG--HK 211 Query: 216 RITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274 + +ST G + LA+SLH + R L+P K ++ L +A + Sbjct: 212 DLVISTVGDERLFEALNRMSARPALAVSLHTTDDAKRRTLLPRGAKMTVKALTEAAEAWA 271 Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDI 334 + +++ +++G+ND + LI++L G A +N IP N G Y D++ Sbjct: 272 RKT-GYPTQYQWTLIQGVNDGEEEVNRLIELLTGHYAIVNFIPVNAVDGSVYSRPDREHA 330 Query: 335 VTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL--SKRIPKVPRQEMQITG 384 +K +G + +R D+ CGQL++ S Q ++ T Sbjct: 331 AHLVRRLKSAGIVATLRDSAAQDVDGGCGQLRARVLSAESKARAEQAVRRTA 382 >gi|167951357|ref|ZP_02538431.1| radical SAM enzyme, Cfr family protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 220 Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats. Identities = 82/245 (33%), Positives = 119/245 (48%), Gaps = 25/245 (10%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 + + +L+ + + +E +++G ++KWI+ +G+ DF M+DIS+ +R Sbjct: 1 MNETNLMELDQRSMERCFVELGSKA----FHGRNVFKWIHKQGVIDFNQMTDISKRLRVQ 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L I PE+V E+ + DGTRKW+L+ IETVYIP+ R T+CVSSQVG Sbjct: 57 LESLAEIRLPELVFEQPARDGTRKWVLQL-----DDGQRIETVYIPDGERSTICVSSQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L CSFC TG+ G + +NIV Sbjct: 112 CALNCSFCSTGSPGFQPQSLGG----------------GDYRPGLGWPAVNWWHPPTNIV 155 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 +MGMGEPL NFD V ++ I D SK R+T+STSG VP + ++ E V LA Sbjct: 156 LMGMGEPLANFDAVVTAMDIMQDDSAYMLSKYRVTISTSGIVPALRQLREVSDVSLARVA 215 Query: 244 HAVSN 248 Sbjct: 216 ACADQ 220 >gi|171920772|ref|ZP_02931966.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185178859|ref|ZP_02964635.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024156|ref|ZP_02996884.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518505|ref|ZP_03003979.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524054|ref|ZP_03004149.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867775|ref|ZP_03079776.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273491|ref|ZP_03206027.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554199|ref|YP_002284612.1| hypothetical protein UUR10_0208 [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550410|ref|ZP_03771359.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551492|ref|ZP_03772438.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171903525|gb|EDT49814.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209495|gb|EDU06538.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018787|gb|EDU56827.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997879|gb|EDU66976.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659915|gb|EDX53295.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660630|gb|EDX53886.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198250011|gb|EDY74791.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209541700|gb|ACI59929.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225379307|gb|EEH01672.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379564|gb|EEH01926.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 335 Score = 210 bits (535), Expect = 3e-52, Method: Composition-based stats. Identities = 88/340 (25%), Positives = 158/340 (46%), Gaps = 42/340 (12%) Query: 32 RMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLR 91 + QI+ WIY + I DF S+IS+ + +L ++F I + + + DG+ K+ L Sbjct: 30 PFISKQIYSWIYQKRIFDFDKFSNISKSNQSILKENFDNNLLTINEYQSNSDGSIKFKLL 89 Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 I I + I ++ G L + G + +K + NL+ E++LQ Sbjct: 90 TTINLI-----INCMIIKFEN-GFLIKINPFGIN---------DKKEIINLSTNELVLQT 134 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 LL + L KI+N+++ G + L N + V ++I +D GL+ Sbjct: 135 LLVQQFLDQHKLG-------------KITNVIVKGSQDSLLNMEAVSNFINIINDENGLN 181 Query: 212 FSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDL--RNILVPINRKYPLEMLID 268 KR+I + TSG ++ + G+ + + L ISL+A ++ + + +L N+ + LI+ Sbjct: 182 IGKRKIVVWTSGVDVDLIKWGQLQNQIELIISLNASNSQVYKKLMLNKTNQNWSFIKLIE 241 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 + Y ++N R+ EY+++ IND+ A L+++LK I + LIP+N + Sbjct: 242 QIKTYTEMTN-NRVVLEYLLIDKINDNLDYANELVELLKNILCYVLLIPYN----LNHKT 296 Query: 329 SDQKDIVTFSECI--KRSGYSSPIRTPRGLDILAACGQLK 366 SD + F + + S +R LDI QLK Sbjct: 297 SDN--LEEFFNILSINKIRISKRVRKSNDLDIS--FTQLK 332 >gi|159479394|ref|XP_001697778.1| hypothetical protein CHLREDRAFT_120230 [Chlamydomonas reinhardtii] gi|158274146|gb|EDO99930.1| predicted protein [Chlamydomonas reinhardtii] Length = 239 Score = 210 bits (535), Expect = 3e-52, Method: Composition-based stats. Identities = 80/249 (32%), Positives = 121/249 (48%), Gaps = 23/249 (9%) Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC+TG + L+ NL+ +I+ I+N+V M Sbjct: 1 MNCQFCFTGRRGLLGNLSTAQIIE--------------QPQPRPQQSQQAPPPITNLVFM 46 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-------VM 238 GMGEPL N V ++ I + GL+ S R+TLST G +P + + V Sbjct: 47 GMGEPLHNPTAVFAAIDILAHRHGLAMSPSRVTLSTVGLLPQLQHFLDSSRGEGGRARVC 106 Query: 239 LAISLHAVSNDLRNILVPINRKYPL--EMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 LA+S+HA +++LR +VP N + L + L R + FEY +L+G+ND P Sbjct: 107 LAVSIHAGTDELRGAIVPSNTRLSLPPAGFSPSNNTIRPLRAGRYVLFEYTLLRGVNDRP 166 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 DA L++ K I NLI FNP+PG Y S + ++ F + + +G +R +G Sbjct: 167 EDAAALLEATKDIECSFNLIMFNPFPGTLYSPSTPERLLAFQKVLWAAGRIVHVRLSKGD 226 Query: 357 DILAACGQL 365 D +AACGQL Sbjct: 227 DGMAACGQL 235 >gi|299116401|emb|CBN74666.1| conserved unknown protein [Ectocarpus siliculosus] Length = 598 Score = 209 bits (533), Expect = 5e-52, Method: Composition-based stats. Identities = 93/315 (29%), Positives = 151/315 (47%), Gaps = 57/315 (18%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYV--RGIRDFQG----------- 52 K L G++ E ++ + ++G R + W+Y R IRD Sbjct: 92 KVMLKGLLFSETQQLMERLGEKAG----RAEVLAGWLYHDRRLIRDIAETAGGAGSAEPG 147 Query: 53 ------MSDIS-----------QEVRHLLNQHFSI-IYPEIVDEKISCDGTRKWLLRFPA 94 ++ S ++ R + + + E+ D +++ DGTRK L+ Sbjct: 148 GDATNSNTNRSGSLVSSKSRIGKKTRDAVREVATADGGLELEDVQLAADGTRK-LVSVLT 206 Query: 95 RCIGGPVEIETVYIPE------KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 G ++ETV IP + R T+CVSSQVGC++ C FC+TG L+ NL A +I+ Sbjct: 207 SGEGAGKKVETVIIPMLRGPQREPRYTVCVSSQVGCAMNCQFCFTGRLGLMANLQAAQIV 266 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 QVL+A+ + ++ +V MGMGEP N+D V +++ I +D Sbjct: 267 EQVLVAKRY------------LETVGDPSPVTGVVFMGMGEPFDNYDRVMRAVKILTDPR 314 Query: 209 -GLSFSKRRITLSTSGFVPNIARVGEEI--GVMLAISLHAVSNDLRNILVPINRKYPLEM 265 G+ +T+ST G VP I R ++ G LAISLH+V +++R+ L+P+NR+YPLE Sbjct: 315 AGVRLKASSVTVSTVGLVPQIERFCKDPANGASLAISLHSVVDEVRDKLIPVNRRYPLEQ 374 Query: 266 LIDACRHYPGLSNAR 280 L + R + S+ Sbjct: 375 LSETLRTHFPRSSKP 389 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 32/86 (37%), Positives = 42/86 (48%) Query: 284 FEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR 343 EY +L G+NDS DA L + L+G+ +NLI FN G + S + F + Sbjct: 488 VEYTLLGGVNDSLGDAGRLAEWLEGVACVVNLITFNAHAGTPFSPSSPEAAEAFRRALAA 547 Query: 344 SGYSSPIRTPRGLDILAACGQLKSLS 369 G R RG D +AACGQL S Sbjct: 548 RGQLCTFRDSRGDDGMAACGQLGGES 573 >gi|298706960|emb|CBJ29779.1| conserved unknown protein [Ectocarpus siliculosus] Length = 531 Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats. Identities = 97/288 (33%), Positives = 136/288 (47%), Gaps = 49/288 (17%) Query: 4 LKKESLIG----MMREELEEALLKIGIPQRHVRMRTSQIWKW------IYVRGIRDFQGM 53 + K+ ++ + L AL + GI + H + +W + ++ F G Sbjct: 1 MVKKRVLDPIPVLDEALLSAALREEGIKELH----AASVWHYALSEGKLHGSDAT-FDGF 55 Query: 54 SD------ISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVY 107 D LL + F+++ +V+ + S DGT K L+R +ETV Sbjct: 56 EDGKFYMSAPAPTGPLLRRKFAVLTSTVVETQRSEDGTVKLLVRLQD-----GQMVETVI 110 Query: 108 IPEKS---RGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC 164 I R TLCVSSQVGC + C+FC TGT L +LTA EIL QVL A + Sbjct: 111 IKHNGTHPRTTLCVSSQVGCQMACTFCATGTMGLKGDLTAGEILEQVLHASRVS------ 164 Query: 165 EDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF 224 I N+V MGMGEPL N+D V S+ +DS S R ITLST G Sbjct: 165 -------------PIRNVVFMGMGEPLNNYDAVLASIRGMADSRMFKLSPRHITLSTVGV 211 Query: 225 VPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 VP + ++ + LA+SLHA + +LRN +VP R Y L+ L+DA Sbjct: 212 VPRMKQLTIDAPETQLALSLHAPNQELRNRIVPSARAYRLDKLMDALD 259 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 35/93 (37%), Positives = 46/93 (49%), Gaps = 3/93 (3%) Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPW--PGCE-YLCSDQKDIV 335 RR EYVML G+ND+ L ++LKG +NLIP+NP PG E + ++ + Sbjct: 336 GRRALIEYVMLAGVNDTEECGRELGELLKGRNVLVNLIPYNPTYAPGSEEFKEPTEEALQ 395 Query: 336 TFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 F + G IR G DI ACGQL Sbjct: 396 KFRAIVHEHGLLVTIRRHHGRDIDGACGQLAVK 428 >gi|226323828|ref|ZP_03799346.1| hypothetical protein COPCOM_01603 [Coprococcus comes ATCC 27758] gi|225208012|gb|EEG90366.1| hypothetical protein COPCOM_01603 [Coprococcus comes ATCC 27758] Length = 176 Score = 207 bits (527), Expect = 3e-51, Method: Composition-based stats. Identities = 76/194 (39%), Positives = 109/194 (56%), Gaps = 19/194 (9%) Query: 147 ILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD 206 +L QV + + G+ ++SNIV+MG GEPL N+DN K + + SD Sbjct: 1 MLRQVYQIQKITGE-----------------RVSNIVIMGTGEPLDNYDNFLKFIHMVSD 43 Query: 207 SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEM 265 GL+ S+R IT ST G VPNI R+ EE + + LA+SLH + + R L+P+ KY L Sbjct: 44 EHGLNISQRNITASTCGIVPNIRRLAEEKLQITLALSLHGSNQEKRRSLMPVANKYELHE 103 Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE 325 +++AC +Y + RITFEY ++ G+ND+P DA L+ ILK +NLIP NP Sbjct: 104 VLEACDYYFEKTGR-RITFEYSLVHGVNDTPEDAKELMGILKDRNCHLNLIPVNPIKERN 162 Query: 326 YLCSDQKDIVTFSE 339 Y D+K F + Sbjct: 163 YEKPDKKKCREFQK 176 >gi|75762654|ref|ZP_00742496.1| Radical SAM family enzyme [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74489853|gb|EAO53227.1| Radical SAM family enzyme [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 246 Score = 206 bits (525), Expect = 4e-51, Method: Composition-based stats. Identities = 58/192 (30%), Positives = 103/192 (53%), Gaps = 23/192 (11%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK S+ + E+++ L + G P + R QI+ W+Y + +++++ MS++S+ +R L Sbjct: 15 KKPSIYSLQIHEMQDWLKEQGEP----KFRAGQIFDWLYKKRVKNYEDMSNLSKGLRDKL 70 Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 + F I + ++ S DGT K+L + IETV + + ++CV++QVGC Sbjct: 71 SNSFDITTLNTLVKQTSSDGTIKFLFQLYD-----GYSIETVLMRHEYGNSICVTTQVGC 125 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184 + C+FC + L RNL A EI+ QV+ + L + ++S++V+ Sbjct: 126 RIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDE--------------TEERVSSLVV 171 Query: 185 MGMGEPLCNFDN 196 MG+GEP N+DN Sbjct: 172 MGIGEPFDNYDN 183 >gi|221060556|ref|XP_002260923.1| radical SAM protein [Plasmodium knowlesi strain H] gi|193810997|emb|CAQ42895.1| radical SAM protein, putative [Plasmodium knowlesi strain H] Length = 377 Score = 206 bits (524), Expect = 5e-51, Method: Composition-based stats. Identities = 88/317 (27%), Positives = 140/317 (44%), Gaps = 33/317 (10%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 M + + +LLK+ + R QI +Y I M ++ +R + + FS Sbjct: 1 MEKSKRYASLLKMMDRNSFPKYRLQQILDNMYKAKITSVSKMKNVPTNIRREMKKIFSEN 60 Query: 72 YPEIVD-EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130 I ++ D K L + +IE + S +LC+SSQ+GCS C F Sbjct: 61 LLSIKPLKEYKFDRAYKVLFECKDK-----EKIEATSLDFGSHKSLCISSQIGCSFACKF 115 Query: 131 CYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 C TG + R L +EI Q+L + S + N+ MGMGEP Sbjct: 116 CATGQIGIKRQLELDEITDQLLYFQ------------------SKNENVRNVSFMGMGEP 157 Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSND 249 L N +V +S+ ++ S S RRI +ST G +P I ++ + V L+ SLH+ ++ Sbjct: 158 LAN-PHVFESIKFFNNVNLFSLSSRRINISTVGLLPGIKKLNDLHPQVNLSFSLHSPFSE 216 Query: 250 LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI 309 R+ LVPIN+ +P ++D + R+ Y++LK +NDS A L + Sbjct: 217 ERDKLVPINKLFPFHEVLDLLDSRIARTGR-RVWISYILLKDVNDSKDHAEALCNHIVQR 275 Query: 310 P------AKINLIPFNP 320 P + LIP+N Sbjct: 276 PRAVRYLYNVCLIPYNK 292 >gi|302841922|ref|XP_002952505.1| hypothetical protein VOLCADRAFT_105556 [Volvox carteri f. nagariensis] gi|300262144|gb|EFJ46352.1| hypothetical protein VOLCADRAFT_105556 [Volvox carteri f. nagariensis] Length = 368 Score = 205 bits (523), Expect = 7e-51, Method: Composition-based stats. Identities = 92/360 (25%), Positives = 133/360 (36%), Gaps = 141/360 (39%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68 L + ELEE + +G P + R Q+++W+Y Sbjct: 101 LKNLTLPELEEWCISVGEPAK----RAKQLYRWLY------------------------- 131 Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 G RKW +R + G P + ++VGC++ C Sbjct: 132 ---------------GNRKW-IRNLDQADGDPQAFSAAF-----------KAKVGCAMNC 164 Query: 129 SFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG 188 FCYTG L+ NL+ +IL QV+ AR L + SV I+NIV MGMG Sbjct: 165 QFCYTGRMGLLGNLSTAQILEQVVEARRYLAE------------QSVHIPIANIVFMGMG 212 Query: 189 EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN 248 EPL N+D V ++ Sbjct: 213 EPLHNYDAVMAAI----------------------------------------------- 225 Query: 249 DLRNILVPINRKYPLEMLIDACRH---YPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++R+ +VP NR+YPLE L+ R Y + EYV+L G+NDS DA L+ + Sbjct: 226 EVRDWIVPTNRRYPLEQLLGVLREAFPYDKRKGDNFVVIEYVLLAGVNDSTEDAKRLLNL 285 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 I +NLI FNP G ++ S +G + +AACGQL Sbjct: 286 TNDIYCLVNLIVFNPHTGTQFSRS-----------------------SKGDEQMAACGQL 322 >gi|294944627|ref|XP_002784350.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] gi|239897384|gb|EER16146.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] Length = 308 Score = 202 bits (514), Expect = 9e-50, Method: Composition-based stats. Identities = 92/301 (30%), Positives = 144/301 (47%), Gaps = 31/301 (10%) Query: 14 REELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF-SIIY 72 E+ E L K P+ + + + + ++ +G+ ++ + Q VR L + Sbjct: 36 LSEIVECLEKERTPEWQIGL----VIQDVFKKGVSSPSAINRVPQGVRDALQARLGESLS 91 Query: 73 PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132 P V E+ S D K+LL +IE V + +S +LCVSSQ+GC+ CSFC Sbjct: 92 PLRVLEQGSADFAHKFLLE----SRQDGGKIEAVGLDFRSHTSLCVSSQIGCAFNCSFCA 147 Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192 TG L R L+ +EI+ QVL+ R + G + ++ MGMGEPL Sbjct: 148 TGKLGLKRQLSVDEIVGQVLMFR------------------ATGNVVDSVSFMGMGEPLA 189 Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHAVSNDLR 251 N + ++S+ +D + S RR+++ST G +P + ++ E +A SLH+ + R Sbjct: 190 NPK-IFNAISVMTDPQLVGLSTRRMSISTIGIIPGLVKLTELHPQANVAYSLHSPFPEER 248 Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK-ILKGIP 310 ++PI R YP + D + RI Y++LKGINDS R A K LK P Sbjct: 249 EKIMPIQRVYPFAKVFDVLDDRIKRTGR-RIWISYLLLKGINDSERYATYEAKNALKRKP 307 Query: 311 A 311 A Sbjct: 308 A 308 >gi|313624986|gb|EFR94881.1| ribosomal RNA large subunit methyltransferase N [Listeria innocua FSL J1-023] Length = 179 Score = 200 bits (508), Expect = 4e-49, Method: Composition-based stats. Identities = 73/177 (41%), Positives = 106/177 (59%), Gaps = 6/177 (3%) Query: 213 SKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 R IT+STSG P I E+ V LAISLHA +N+LR ++ IN+ Y +E L++A Sbjct: 1 GARHITVSTSGLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYSIEKLMEAIH 60 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPWPGC-EYLC 328 +Y +N RITFEY+MLKG+ND ++AL L +L A +NLIP+NP +Y Sbjct: 61 YYVNKTNR-RITFEYIMLKGVNDHKKEALELAALLGEHRHLAYVNLIPYNPVDEHIDYER 119 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS-KRIPKVPRQEMQITG 384 S ++D++ F + +K++G + IR G DI AACGQL+S KR+ R + + Sbjct: 120 STKEDVLAFYDTLKKNGINCVIRREHGTDIDAACGQLRSKQIKRVGVRERMKQKQAA 176 >gi|77415028|ref|ZP_00791102.1| Unknown [Streptococcus agalactiae 515] gi|77158922|gb|EAO70159.1| Unknown [Streptococcus agalactiae 515] Length = 168 Score = 199 bits (507), Expect = 5e-49, Method: Composition-based stats. Identities = 64/166 (38%), Positives = 100/166 (60%), Gaps = 5/166 (3%) Query: 217 ITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275 IT+STSG I E + V L++SLHA +N+LR+ ++ INR +PLE L A +Y Sbjct: 1 ITVSTSGLAHKIREFANEGVQVNLSVSLHAPNNELRSSIMRINRSFPLEKLFAAIEYYIE 60 Query: 276 LSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCE-YLCSDQK 332 +N R+TFEY+ML G+ND+P +A L + K I + +NLIP+NP + Y S ++ Sbjct: 61 TTNR-RVTFEYIMLNGVNDTPENAQELADLTKKIRKLSYVNLIPYNPVSEHDQYSRSPKE 119 Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQ 378 + F + +K++G + +R G DI AACGQL+S + + + + Sbjct: 120 RVEAFYDVLKKNGVNCVVRQEHGTDIDAACGQLRSNTMKRDRQKAK 165 >gi|313620442|gb|EFR91829.1| ribosomal RNA large subunit methyltransferase N [Listeria innocua FSL S4-378] Length = 180 Score = 199 bits (506), Expect = 7e-49, Method: Composition-based stats. Identities = 73/178 (41%), Positives = 107/178 (60%), Gaps = 6/178 (3%) Query: 212 FSKRRITLSTSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 + R IT+STSG P I E+ V LAISLHA +N+LR ++ IN+ Y +E L++A Sbjct: 1 INARHITVSTSGLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYSIEKLMEAI 60 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPWPGC-EYL 327 +Y +N RITFEY+MLKG+ND ++AL L +L A +NLIP+NP +Y Sbjct: 61 HYYVNKTNR-RITFEYIMLKGVNDHKKEALELAALLGEHRHLAYVNLIPYNPVDEHIDYE 119 Query: 328 CSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS-KRIPKVPRQEMQITG 384 S ++D++ F + +K++G + IR G DI AACGQL+S KR+ R + + Sbjct: 120 RSTKEDVLAFYDTLKKNGINCVIRREHGTDIDAACGQLRSKQIKRVGVRERMKQKQAA 177 >gi|71029582|ref|XP_764434.1| hypothetical protein [Theileria parva strain Muguga] gi|68351388|gb|EAN32151.1| hypothetical protein, conserved [Theileria parva] Length = 235 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 84/229 (36%), Positives = 116/229 (50%), Gaps = 28/229 (12%) Query: 31 VRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEIVDEKISCDGTRKW 88 + R SQI+ IY +F M + + +R L+ +F S++ V E SCD +K Sbjct: 20 PKYRLSQIFNSIYRNKTSNFLSMYHLPKILRDGLHDNFNGSLLSLTPVSE-SSCDRAKKV 78 Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 L + IE V + + +LC+SSQVGCS CSFC TG L RNLT +EI Sbjct: 79 LFQNQD-----GSRIEAVLLHFNTHKSLCISSQVGCSFACSFCATGKIGLKRNLTMDEIT 133 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 QVL + L G KI +I MGMGEPL N NV +++S+ +D Sbjct: 134 DQVLYFQQL------------------GHKIDSISFMGMGEPLSN-PNVFRAISVLTDKR 174 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDLRNILVP 256 S RRI +ST G +P I ++ +E V LA SLH+ + RN +VP Sbjct: 175 YFGLSPRRINVSTVGILPGIKKLNKEFPYVNLAYSLHSPFTEERNEMVP 223 >gi|307127683|ref|YP_003879714.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae 670-6B] gi|306484745|gb|ADM91614.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae 670-6B] Length = 300 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 77/370 (20%), Positives = 143/370 (38%), Gaps = 81/370 (21%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + D ++ + S+I+ + Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFADEGVQVNLAVSLHAPNNELRSSIMKI 172 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG-FVPNIARVGEEIGVMLAISLH 244 P + + ++ ++ + I L+ V + E + L Sbjct: 173 NRAFP---IEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELLKN--IKKLS 227 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 V+ L+P N P+ S R+ Y LK Sbjct: 228 YVN------LIPYN---PVSE-----HDQYSRSPKERVLAFYDTLKK------------- 260 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 KG+ + R G DI AACGQ Sbjct: 261 --KGVNCVV-------------------------------------RQEHGTDIDAACGQ 281 Query: 365 LKSLSKRIPK 374 L+S + + + Sbjct: 282 LRSNTMKRDR 291 >gi|168492917|ref|ZP_02717060.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae CDC3059-06] gi|183576957|gb|EDT97485.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae CDC3059-06] Length = 300 Score = 194 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 77/370 (20%), Positives = 144/370 (38%), Gaps = 81/370 (21%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ ++ + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLVHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + D ++ + S+I+ + Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFADEGVQVNLAVSLHAPNNELRSSIMKI 172 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG-FVPNIARVGEEIGVMLAISLH 244 P + + ++ ++ + I L+ V + E + L Sbjct: 173 NRAFP---IEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELLKN--IKKLS 227 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 V+ L+P N P+ S R+ Y LK Sbjct: 228 YVN------LIPYN---PVSE-----HDQYSRSPKERVLAFYDTLKK------------- 260 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 KG+ + R G DI AACGQ Sbjct: 261 --KGVNCVV-------------------------------------RQEHGTDIDAACGQ 281 Query: 365 LKSLSKRIPK 374 L+S + + + Sbjct: 282 LRSNTMKRDR 291 >gi|221231562|ref|YP_002510714.1| radical SAM superfamily protein [Streptococcus pneumoniae ATCC 700669] gi|220674022|emb|CAR68535.1| radical SAM superfamily protein [Streptococcus pneumoniae ATCC 700669] Length = 300 Score = 193 bits (490), Expect = 5e-47, Method: Composition-based stats. Identities = 76/370 (20%), Positives = 143/370 (38%), Gaps = 81/370 (21%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ ++ + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLVHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + D ++ + S+ + + Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFADEGVQVNLAVSLHAPNNELRSSTMKI 172 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG-FVPNIARVGEEIGVMLAISLH 244 P + + ++ ++ + I L+ V + E + L Sbjct: 173 NRAFP---IEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELLKN--IKKLS 227 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 V+ L+P N P+ S R+ Y LK Sbjct: 228 YVN------LIPYN---PVSE-----HDQYSRSPKERVLAFYDTLKK------------- 260 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 KG+ + R G DI AACGQ Sbjct: 261 --KGVNCVV-------------------------------------RQEHGTDIDAACGQ 281 Query: 365 LKSLSKRIPK 374 L+S + + + Sbjct: 282 LRSNTMKRDR 291 >gi|171920082|ref|ZP_02931510.1| conserved hypothetical protein [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|171902433|gb|EDT48722.1| conserved hypothetical protein [Ureaplasma parvum serovar 1 str. ATCC 27813] Length = 336 Score = 192 bits (488), Expect = 9e-47, Method: Composition-based stats. Identities = 91/365 (24%), Positives = 168/365 (46%), Gaps = 45/365 (12%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + + + EL+E L ++G+ + QI+ WIY + I +F S+I++ +L + Sbjct: 9 KEIYSLSLNELKEELFELGL----KSFISKQIYSWIYQKRIFNFDKFSNIAKNNVIILKE 64 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 +FS +I + + DG+ K+ I I + I K+ G L + G + Sbjct: 65 NFSNNLLKINSYQSNSDGSIKFEFLTDKNLI-----INCMIIKFKN-GFLIKINPFGINF 118 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 K + NL+ E++LQ+LL + L I+N+++ G Sbjct: 119 K---------KEIINLSTNELVLQILLIQQFLDQRKLGN-------------ITNVIIKG 156 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245 + + L N D V ++I ++ GL+ KR+I + TSG ++ + G+ + + L IS++A Sbjct: 157 LQDSLLNMDVVSNFINIINNENGLNIGKRKIAVWTSGINVDLIKWGQLQNQIELIISMNA 216 Query: 246 VSN--DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 ++ + +L +N+ + LI+ + Y ++N R+ EY+++ IND A L+ Sbjct: 217 SNSLIYQKIMLKKLNQNWSFLKLIEQIKAYTKITN-NRVVLEYLLIDKINDDLNYANELV 275 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI--KRSGYSSPIRTPRGLDILAA 361 ++LK I + LIP+N Y S ++ F + + S IR LDI Sbjct: 276 ELLKNILCYVLLIPYNLN---NYRTS--ANLDDFFNILSVNKIRISKRIRKSNDLDIS-- 328 Query: 362 CGQLK 366 QLK Sbjct: 329 FKQLK 333 >gi|332076047|gb|EGI86513.1| ribosomal RNA large subunit methyltransferase N [Streptococcus pneumoniae GA41301] Length = 300 Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 77/370 (20%), Positives = 142/370 (38%), Gaps = 81/370 (21%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMCQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC G K R+L EI+ Q++L + D ++ + S+I+ + Sbjct: 113 IGCTFCAFGLIKKQRDLNNGEIVAQIMLVQKYFADEGVQVNLAVSLHAPNNELRSSIMKI 172 Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG-FVPNIARVGEEIGVMLAISLH 244 P + + ++ ++ + I L+ V + E + L Sbjct: 173 NRAFP---IEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELLKN--IKKLS 227 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 V+ L+P N P+ S R+ Y LK Sbjct: 228 YVN------LIPYN---PVSE-----HDQYSRSPKERVLAFYDTLKK------------- 260 Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364 KG+ + R G DI AACGQ Sbjct: 261 --KGVNCVV-------------------------------------RQEHGTDIDAACGQ 281 Query: 365 LKSLSKRIPK 374 L+S + + + Sbjct: 282 LRSNTMKRDR 291 >gi|302854556|ref|XP_002958785.1| hypothetical protein VOLCADRAFT_108314 [Volvox carteri f. nagariensis] gi|300255893|gb|EFJ40175.1| hypothetical protein VOLCADRAFT_108314 [Volvox carteri f. nagariensis] Length = 993 Score = 191 bits (486), Expect = 2e-46, Method: Composition-based stats. Identities = 80/370 (21%), Positives = 137/370 (37%), Gaps = 85/370 (22%) Query: 38 IWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDG-TRKWLLRFPARC 96 + + + + D+ + LL+++F+ ++ + S D T K L+ Sbjct: 626 LSGHLIRHPESSWHDVPDMPKAALALLDKYFTKFTTRVLKCQTSSDSTTTKLLVELQD-- 683 Query: 97 IGGPVEIETVYIPEKS-----------------RGTLCVSSQVGCSLTCSFCYTGTQKLV 139 +++E V + S + Q G + Sbjct: 684 ---GMQVEAVVMTYDSPSRDPQLMGSNGPEADPHLPVDHRQQPGEEEQEEEEDKQRKGEQ 740 Query: 140 ----RNLTAEEI---------------LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 +E+ + + L G+ E +E ++ I Sbjct: 741 TGPCGEQQPQEMKVVMVWAGLPVAALGAGEWVGTMGLKGNLNAGEIVEQLMHARAVTPIR 800 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VML 239 NIV MGMGEPL N++ V+ ++++ +DS +R +T+ST G VP I ++ +++ V L Sbjct: 801 NIVFMGMGEPLNNYEAVRSAVAMMTDSRFFGLRRRHVTVSTVGVVPRIKQLAQDLPGVSL 860 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 A+SLHA + +LR +VP R Y L +L+DA Sbjct: 861 ALSLHAPTQELRAKIVPSARAYKLPVLMDA------------------------------ 890 Query: 300 LNLIKILKGIPAKINLIPFNPW--PGCEYL-CSDQKDIVTFSECIKR-SGYSSPIRTPRG 355 G INLIP+NP P + + + F ++ G + IR G Sbjct: 891 --------GDDVVINLIPWNPIYQPEGPFFNAPAEGSVAAFQGVLRHTYGLHTTIRQEMG 942 Query: 356 LDILAACGQL 365 DI ACGQL Sbjct: 943 QDISGACGQL 952 >gi|13357773|ref|NP_078047.1| hypothetical protein UU214 [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170761929|ref|YP_001752296.1| hypothetical protein UPA3_0221 [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|183508786|ref|ZP_02958251.1| conserved hypothetical protein [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|11356788|pir||H82920 conserved hypothetical UU214 [imported] - Ureaplasma urealyticum gi|6899181|gb|AAF30622.1|AE002120_14 conserved hypothetical [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827506|gb|ACA32768.1| conserved hypothetical protein [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|182675731|gb|EDT87636.1| conserved hypothetical protein [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 336 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 92/365 (25%), Positives = 168/365 (46%), Gaps = 45/365 (12%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + + + EL+E L K+G+ + QI+ WIY + I +F S+I++ +L + Sbjct: 9 KEIYSLSLNELKEELFKLGL----KSFISKQIYSWIYQKRIFNFDKFSNIAKNNVIILKE 64 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 +FS +I + + DG+ K+ I I + I K+ G L + G + Sbjct: 65 NFSNNLLKINSYQSNSDGSIKFEFLTDKNLI-----INCMIIKFKN-GFLIKINPFGINF 118 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 K + NL+ E++LQ+LL + L I+N+++ G Sbjct: 119 K---------KEIINLSTNELVLQILLIQQFLDQRKLGN-------------ITNVIIKG 156 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245 + + L N D V ++I ++ GL+ KR+I + TSG ++ + G+ + + L IS++A Sbjct: 157 LQDSLLNMDVVSNFINIINNENGLNIGKRKIAVWTSGINVDLIKWGQLQNQIELIISMNA 216 Query: 246 VSN--DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 ++ + +L +N+ + LI+ + Y ++N R+ EY+++ IND A L+ Sbjct: 217 SNSLIYQKIMLKKLNQNWSFLKLIEQIKAYTKITN-NRVVLEYLLIDKINDDLNYANELV 275 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI--KRSGYSSPIRTPRGLDILAA 361 ++LK I + LIP+N Y S ++ F + + S IR LDI Sbjct: 276 ELLKNILCYVLLIPYNLN---NYRTS--ANLDDFFNILSVNKIRISKRIRKSNDLDIS-- 328 Query: 362 CGQLK 366 QLK Sbjct: 329 FKQLK 333 >gi|68074255|ref|XP_679042.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56499685|emb|CAH98368.1| conserved hypothetical protein [Plasmodium berghei] Length = 308 Score = 190 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 96/308 (31%), Positives = 142/308 (46%), Gaps = 33/308 (10%) Query: 21 LLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKI 80 ++K+ R+ + R QI IY I + M +I ++R L FS I K Sbjct: 10 IVKMIERNRYEKYRLKQITDNIYKGKIININNMKNIPTDIRKNLKNLFSENILSIKPIKE 69 Query: 81 SC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV 139 D K L + +IE + S +LC+SSQ+GCS C FC TG + Sbjct: 70 DKYDRAYKILFECKDK-----EKIEATALDFGSHTSLCISSQIGCSFACKFCATGQIGIK 124 Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199 R L +EI Q+L + S I N+ MGMGEPL N NV + Sbjct: 125 RQLELDEITDQLLYFQ------------------SKNVNIKNVSFMGMGEPLAN-PNVFE 165 Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPIN 258 ++ + S S S RRI +ST G +P I ++ E V L+ SLH+ + R+ LVPIN Sbjct: 166 AIRFFNSSNFFSLSSRRINISTVGLLPGIKKLNELFPQVNLSFSLHSPFTEERDQLVPIN 225 Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK-ILKGIPAK----- 312 + +P ++D +N R+ Y+++K +NDS A L + I+K P+ Sbjct: 226 KLFPFHEVLDLLDDRIEKTNR-RVWISYILIKDVNDSTDHAEALCEHIIKRPPSVRYLYN 284 Query: 313 INLIPFNP 320 I LIP+N Sbjct: 285 ICLIPYNK 292 >gi|313610609|gb|EFR85705.1| ribosomal RNA large subunit methyltransferase N [Listeria monocytogenes FSL F2-208] Length = 171 Score = 190 bits (482), Expect = 4e-46, Method: Composition-based stats. Identities = 69/169 (40%), Positives = 101/169 (59%), Gaps = 6/169 (3%) Query: 221 TSGFVPNIARVG-EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279 TSG P I E+ V LAISLHA +N+LR ++ IN+ Y +E L++A +Y +N Sbjct: 1 TSGLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTNR 60 Query: 280 RRITFEYVMLKGINDSPRDALNLIKIL--KGIPAKINLIPFNPWPGC-EYLCSDQKDIVT 336 RITFEY+MLKG+ND ++AL L +L A +NLIP+NP +Y S ++D++ Sbjct: 61 -RITFEYIMLKGVNDHKKEALELAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLA 119 Query: 337 FSECIKRSGYSSPIRTPRGLDILAACGQLKSLS-KRIPKVPRQEMQITG 384 F + +K++G + IR G DI AACGQL+S KR+ R + + Sbjct: 120 FYDTLKKNGINCVIRREHGTDIDAACGQLRSKQIKRVGVRERMKQKQAA 168 >gi|317488030|ref|ZP_07946611.1| hypothetical protein HMPREF1023_00309 [Eggerthella sp. 1_3_56FAA] gi|316912860|gb|EFV34388.1| hypothetical protein HMPREF1023_00309 [Eggerthella sp. 1_3_56FAA] Length = 195 Score = 190 bits (482), Expect = 4e-46, Method: Composition-based stats. Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 2/188 (1%) Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-I 235 +K++ IV MGMGEPL N+DN+ ++ I D GL+F IT+ST G V + ++ EE + Sbjct: 9 QKVNRIVFMGMGEPLFNYDNLIAAIHILRDRNGLNFPTDGITVSTVGPVNQLKKLREEHL 68 Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 + L ISLHA + RN ++P Y +E ++ Y N ++ F Y++L GIND Sbjct: 69 KIQLTISLHAATQAARNCIIPHMHMYAIEDVVKQALSYSQRHNR-KVVFAYLLLPGINDR 127 Query: 296 PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRG 355 D L K KG IN++ +NP + ++++V F ++++G +R G Sbjct: 128 SSDIRQLAKWFKGKNVMINVLQYNPTSNSKIRAPQKQEMVAFKHQLEQTGLEVTMRVSHG 187 Query: 356 LDILAACG 363 +I AACG Sbjct: 188 REIKAACG 195 >gi|186701974|ref|ZP_02971605.1| conserved hypothetical protein [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|186700738|gb|EDU19020.1| conserved hypothetical protein [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 336 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 92/365 (25%), Positives = 168/365 (46%), Gaps = 45/365 (12%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ 66 + + + EL+E L K+G+ + QI+ WIY + I +F S+I++ +L + Sbjct: 9 KEIYSLSLNELKEELFKLGL----KSFISKQIYSWIYQKRIFNFDKFSNIAKNNVIILKE 64 Query: 67 HFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSL 126 +FS +I + + DG+ K+ I I + I K+ G L + G + Sbjct: 65 NFSNNLLKINSYQSNSDGSIKFEFLTDKNLI-----INCMIIKFKN-GFLIKINPFGINF 118 Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 K + NL+ E++LQ+LL + L I+N+++ G Sbjct: 119 K---------KEIINLSTNELVLQILLIQQFLDQRKLGN-------------ITNVIIKG 156 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245 + + L N D V ++I ++ GL+ KR+I + TSG ++ + G+ + + L IS++A Sbjct: 157 LQDILLNMDVVSNFINIINNENGLNIGKRKIAVWTSGINVDLIKWGQLQNQIELIISMNA 216 Query: 246 VSN--DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 ++ + +L +N+ + LI+ + Y ++N R+ EY+++ IND A L+ Sbjct: 217 SNSLIYQKIMLKKLNQNWSFLKLIEQIKAYTKITN-NRVVLEYLLIDKINDDLNYANELV 275 Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI--KRSGYSSPIRTPRGLDILAA 361 ++LK I + LIP+N Y S ++ F + + S IR LDI Sbjct: 276 ELLKNILCYVLLIPYNLN---NYRTS--ANLDDFFNILSVNKIRISKRIRKSNDLDIS-- 328 Query: 362 CGQLK 366 QLK Sbjct: 329 FKQLK 333 >gi|301119923|ref|XP_002907689.1| ribosomal RNA large subunit methyltransferase N, putative [Phytophthora infestans T30-4] gi|262106201|gb|EEY64253.1| ribosomal RNA large subunit methyltransferase N, putative [Phytophthora infestans T30-4] Length = 224 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 77/244 (31%), Positives = 115/244 (47%), Gaps = 34/244 (13%) Query: 3 FLKKESLIGM---MREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59 +KK +L + ++ L L K + H IW+++ F + I + Sbjct: 1 MVKKRTLSPLPAFDQKALPVFLQKHDFKELH----ALTIWRYLAQHPDATFADIPGIPKT 56 Query: 60 VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119 +R LL +HF+ + E+ S DGT K LL+ EIE V + R TLCVS Sbjct: 57 LRTLLGEHFAHFTTSVTTEQRSADGTVKLLLKLQD-----GHEIEAVIMRHTGRNTLCVS 111 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 SQVGC + C+FC TGT ++ +L + EIL Q+ A + I Sbjct: 112 SQVGCQMGCTFCATGTLGIIADLCSGEILEQLAHANRVA-------------------PI 152 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VM 238 N+V MGMGEPL N+D V ++ + GL+ + ITLST G + I ++ + V Sbjct: 153 RNVVFMGMGEPLNNYDAVLAAIRAMTKVFGLA--PKYITLSTVGVIHRIRQLSRDAPLVR 210 Query: 239 LAIS 242 LA+S Sbjct: 211 LALS 214 >gi|57505365|ref|ZP_00371294.1| radical SAM enzyme, Cfr family [Campylobacter upsaliensis RM3195] gi|57016501|gb|EAL53286.1| radical SAM enzyme, Cfr family [Campylobacter upsaliensis RM3195] Length = 286 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 64/208 (30%), Positives = 97/208 (46%), Gaps = 40/208 (19%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQH 67 +++ ++ EEL E + R QI +WIY + DF MS++ + +R L ++ Sbjct: 6 NILDLLPEELNE--------KIQPMFRVKQICQWIYQKYADDFSKMSNLPKNLREELAKN 57 Query: 68 FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-------------RG 114 + + + E+ S DG+ K+L + IE+V +P K + Sbjct: 58 YHFEPLKCIKEERSKDGSIKYLFELED-----GLRIESVLLPMKEEKFDEEGKRLSHAKF 112 Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 T+CVSSQVGC CSFC T L RNL+A EI+ Q+L + Sbjct: 113 TICVSSQVGCRSGCSFCLTAKGGLKRNLSAGEIVGQILWIKRQN--------------HI 158 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLS 202 + NIV MGMGEPL N +NV K++ Sbjct: 159 PYERRVNIVYMGMGEPLDNLNNVAKAVR 186 Score = 146 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 55/164 (33%), Positives = 86/164 (52%), Gaps = 5/164 (3%) Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAIS-LHAVSNDLRNILVPINRKYPLEM---LID 268 S L+ G + GE +G +L I + + + R +V + PL+ + Sbjct: 124 SGCSFCLTAKGGLKRNLSAGEIVGQILWIKRQNHIPYERRVNIVYMGMGEPLDNLNNVAK 183 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLC 328 A R +P + +++ FEY+++ GIND A L+K+L GI AK+NLI FNP G Y Sbjct: 184 AVREFP-IDMRKKVMFEYLLIDGINDKIEHAKELVKLLNGIKAKVNLILFNPHQGSIYKR 242 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRI 372 + ++ V F + + + G + IR +GLDI AACGQLK K + Sbjct: 243 PNLENAVKFQDLLSQKGVTCTIRESKGLDISAACGQLKEREKNL 286 >gi|330950790|gb|EGH51050.1| hypothetical protein PSYCIT7_05158 [Pseudomonas syringae Cit 7] Length = 158 Score = 183 bits (466), Expect = 3e-44, Method: Composition-based stats. Identities = 62/137 (45%), Positives = 86/137 (62%), Gaps = 2/137 (1%) Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPRDALN 301 +HA ++ LRN LVP+N+KYPL+ML+++CR Y +R+ T EY MLK IND A+ Sbjct: 1 MHAPNDALRNQLVPLNKKYPLKMLLESCRRYMSNLGEKRVLTIEYTMLKDINDKVEHAVE 60 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 +I++LK P KINLIPFNP+P Y I F + + ++GY+ +RT RG DI AA Sbjct: 61 MIELLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAA 120 Query: 362 CGQL-KSLSKRIPKVPR 377 CGQL + R + R Sbjct: 121 CGQLVGQVMDRTRRSER 137 >gi|225849839|ref|YP_002730073.1| radical SAM enzyme, Cfr family [Persephonella marina EX-H1] gi|225646250|gb|ACO04436.1| radical SAM enzyme, Cfr family [Persephonella marina EX-H1] Length = 271 Score = 183 bits (464), Expect = 5e-44, Method: Composition-based stats. Identities = 72/280 (25%), Positives = 127/280 (45%), Gaps = 31/280 (11%) Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 L R +E+VY TLCVSSQ+GC + CSFC +G L+RNL+ +EI+ Sbjct: 11 LNRLFEIETEDHFTVESVYYRGD---TLCVSSQLGCPVRCSFCASGMNGLIRNLSYDEII 67 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 Q +A S G +I NI G+GEPL N++NVKK+ D Sbjct: 68 DQYRIA------------------VSEGMEIKNIAFAGIGEPLLNWENVKKAFYHFKD-- 107 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 + +T + N + E +++SLHAV+++ R L+P + PL+ ++D Sbjct: 108 ---IGLKASFYTTGFPLKNFKELLELPHNGVSLSLHAVTDEKRKQLIPYGQ--PLDQILD 162 Query: 269 ACRHYPGL---SNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE 325 + + + + Y+++ G+NDS + L +I + + ++L+ +N G + Sbjct: 163 VFKDHLSKLSRRKRKMYSIAYLLIGGVNDSEEEIQKLSQIARDLQVGVSLLKYNEIDGID 222 Query: 326 YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 Y + ++ ++ +G + + CG L Sbjct: 223 YRSTSDEEYERVFLQLRENGIRVTLSNRYRTRKIGGCGTL 262 >gi|6434045|emb|CAB60749.1| hypothetical protein [Staphylococcus aureus] Length = 133 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 53/132 (40%), Positives = 83/132 (62%), Gaps = 1/132 (0%) Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLHA +++R+ L+PINR Y +E LI+A ++Y +N R+TFEY + G+ND A Sbjct: 1 SLHAAKDEVRSRLMPINRAYNVEKLIEAIQYYQEKTNR-RVTFEYGLFGGVNDQLEHARE 59 Query: 302 LIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAA 361 L ++KG+ +NLIP N P Y+ + + DI F + +KR G ++ IR +G DI AA Sbjct: 60 LAHLIKGLNCHVNLIPVNHVPERNYVKTAKNDIFKFEKELKRLGINATIRREQGSDIDAA 119 Query: 362 CGQLKSLSKRIP 373 CGQL++ +++ Sbjct: 120 CGQLRAKERQVE 131 >gi|323456324|gb|EGB12191.1| hypothetical protein AURANDRAFT_5797 [Aureococcus anophagefferens] Length = 234 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 75/247 (30%), Positives = 110/247 (44%), Gaps = 22/247 (8%) Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C FC T LVR LTA+EIL Q +A + + ++NIV MGM Sbjct: 1 CRFCATARMGLVRQLTADEILAQFAIAARVARESDAMP------------PLTNIVFMGM 48 Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVS 247 G+ N D+VK + + D ++ +IT+ST G P + MLA S+HA Sbjct: 49 GDAGRNVDHVKAAATSLVDGDKFRMARSKITISTVGPSPEAFAALADADGMLAWSIHAAD 108 Query: 248 NDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKI 305 DLR LVP +R +PL L ARR + +++ +NDS DA L + Sbjct: 109 EDLRRKLVPSSR-HPLPELRRGLIDALEARPARRRTLMLAATLIRDVNDSDDDAAKLAEF 167 Query: 306 LKGI-----PAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRS--GYSSPIRTPRGLDI 358 + I ++LIP NP ++ + ++ ++ I+ R RG D Sbjct: 168 IGPIVDAAGKCNVDLIPCNPTDHTDFESPSTERVLAYAAKIRELEPRVHVATRLQRGDDE 227 Query: 359 LAACGQL 365 AACGQL Sbjct: 228 SAACGQL 234 >gi|15606673|ref|NP_214053.1| hypothetical protein aq_1528 [Aquifex aeolicus VF5] gi|2983905|gb|AAC07456.1| hypothetical protein aq_1528 [Aquifex aeolicus VF5] Length = 270 Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats. Identities = 74/293 (25%), Positives = 126/293 (43%), Gaps = 42/293 (14%) Query: 88 WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147 +L +E+V+ TLCVS+QVGC + C+FC +G L RNL+AEEI Sbjct: 15 FLFELED-----GYTVESVFYRGD---TLCVSTQVGCPVRCTFCASGKNGLFRNLSAEEI 66 Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207 Q L + I I + G+GEPL N+ NVK++ Sbjct: 67 YNQYELLKDRY-------------------PIKRIAVAGIGEPLSNWRNVKEAFEKFKKE 107 Query: 208 MGLSFSKRRITLSTSGFV-PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEML 266 +++ T+GF ++ + + ISLH+++++ R L+P K LE + Sbjct: 108 ------GLKVSFYTTGFPTKHLRELLHLPHSGVTISLHSLNDETRKYLMPHAGK--LEEV 159 Query: 267 IDACRHYPGL---SNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPG 323 I ++++ Y++LK +NDS + L ++ K + I L+ +N Sbjct: 160 IKVLEEELPKLSSKKRKKVSLAYILLKDVNDSQEELEKLAELAKRLGVSITLLYYNKT-- 217 Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL-KSLSKRIPKV 375 E+ +K+ ++ G + T D L CG L + +K + KV Sbjct: 218 FEFEPVSEKEYEEAFLFLRSKGVRVTLSTRFRKDKLGGCGTLVVNRNKELTKV 270 >gi|225860741|ref|YP_002742250.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae Taiwan19F-14] gi|298229131|ref|ZP_06962812.1| radical SAM enzyme, Cfr family protein [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255804|ref|ZP_06979390.1| radical SAM enzyme, Cfr family protein [Streptococcus pneumoniae str. Canada MDR_19A] gi|225727931|gb|ACO23782.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae Taiwan19F-14] gi|327390124|gb|EGE88467.1| ribosomal RNA large subunit methyltransferase N [Streptococcus pneumoniae GA04375] Length = 300 Score = 179 bits (454), Expect = 8e-43, Method: Composition-based stats. Identities = 60/192 (31%), Positives = 98/192 (51%), Gaps = 24/192 (12%) Query: 203 IASDSMGLSFSKRRITLSTSGFVPNIARVG-----------------EEIGVMLAISLHA 245 + +G + T SG + + E + V LA+SLHA Sbjct: 104 CVTTQVGCNIGC---TFCASGLIKKQRDLNNGEIVAQIMLVQKYFADEGVQVNLAVSLHA 160 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L ++ Sbjct: 161 PNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAEL 219 Query: 306 LKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AAC Sbjct: 220 LKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGGNCVVRQEHGTDIDAAC 279 Query: 363 GQLKSLSKRIPK 374 GQL+ + + + Sbjct: 280 GQLRFNTMKRDR 291 Score = 176 bits (446), Expect = 6e-42, Method: Composition-based stats. Identities = 48/197 (24%), Positives = 99/197 (50%), Gaps = 12/197 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + + +++ +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLAHQTMQKWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QVGC+ Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + D ++ + S+I+ + Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFADEGVQVNLAVSLHAPNNELRSSIMKI 172 Query: 186 GMGEPLCNFDNVKKSLS 202 P + + ++ Sbjct: 173 NRAFP---IEKLFAAIE 186 >gi|298502552|ref|YP_003724492.1| Fe-S-cluster redox enzyme [Streptococcus pneumoniae TCH8431/19A] gi|298238147|gb|ADI69278.1| Fe-S-cluster redox enzyme [Streptococcus pneumoniae TCH8431/19A] Length = 288 Score = 178 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 60/192 (31%), Positives = 98/192 (51%), Gaps = 24/192 (12%) Query: 203 IASDSMGLSFSKRRITLSTSGFVPNIARVG-----------------EEIGVMLAISLHA 245 + +G + T SG + + E + V LA+SLHA Sbjct: 92 CVTTQVGCNIGC---TFCASGLIKKQRDLNNGEIVAQIMLVQKYFADEGVQVNLAVSLHA 148 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML +ND AL L ++ Sbjct: 149 PNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIMLNEVNDGVEQALELAEL 207 Query: 306 LKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362 LK I + +NLIP+NP + Y S ++ ++ F + +K+ G + +R G DI AAC Sbjct: 208 LKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGGNCVVRQEHGTDIDAAC 267 Query: 363 GQLKSLSKRIPK 374 GQL+ + + + Sbjct: 268 GQLRFNTMKRDR 279 Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats. Identities = 46/186 (24%), Positives = 94/186 (50%), Gaps = 12/186 (6%) Query: 17 LEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIV 76 +++ +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN F + + Sbjct: 1 MQKWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLNDQFVVNPLKQR 56 Query: 77 DEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ 136 + S DGT K+L P + IETV + + ++CV++QVGC++ C+FC +G Sbjct: 57 IVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVGCNIGCTFCASGLI 111 Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN 196 K R+L EI+ Q++L + D ++ + S+I+ + P + Sbjct: 112 KKQRDLNNGEIVAQIMLVQKYFADEGVQVNLAVSLHAPNNELRSSIMKINRAFP---IEK 168 Query: 197 VKKSLS 202 + ++ Sbjct: 169 LFAAIE 174 >gi|225854275|ref|YP_002735787.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae JJA] gi|225722744|gb|ACO18597.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae JJA] Length = 300 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 56/148 (37%), Positives = 90/148 (60%), Gaps = 5/148 (3%) Query: 231 VGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 +E + V LA+SLHA +N+LR+ ++ INR +P+E L A +Y +N R+TFEY+ML Sbjct: 145 FADEGVQVNLAVSLHAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTNR-RVTFEYIML 203 Query: 290 KGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGY 346 +ND AL L ++LK I + +NLIP+NP + Y S ++ ++ F + +K+ G Sbjct: 204 NEVNDGVEQALELAELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGG 263 Query: 347 SSPIRTPRGLDILAACGQLKSLSKRIPK 374 + +R G DI AACGQL+ + + + Sbjct: 264 NCVVRQEHGTDIDAACGQLRFNTMKRDR 291 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 48/197 (24%), Positives = 98/197 (49%), Gaps = 12/197 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K S+ + + ++E +L+ G + R QIW+W+Y + ++ F+ M+++S+++ LN Sbjct: 2 KPSIHSLAHQTMQEWVLEQG----EKKFRADQIWEWLYRKRVQSFEEMTNLSKDLIAKLN 57 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + + + S DGT K+L P + IETV + + ++CV++QV C+ Sbjct: 58 DQFVVNPLKQRIVQESADGTVKYLFELPDGML-----IETVLMRQHYGLSVCVTTQVSCN 112 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C+FC +G K R+L EI+ Q++L + D ++ + S+I+ + Sbjct: 113 IGCTFCASGLIKKQRDLNNGEIVAQIMLVQKYFADEGVQVNLAVSLHAPNNELRSSIMKI 172 Query: 186 GMGEPLCNFDNVKKSLS 202 P + + ++ Sbjct: 173 NRAFP---IEKLFAAIE 186 >gi|225456810|ref|XP_002275716.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 198 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 64/175 (36%), Positives = 95/175 (54%), Gaps = 5/175 (2%) Query: 196 NVKKSLSIASDSMGLSF--SKRRITLSTSG---FVPNIARVGEEIGVMLAISLHAVSNDL 250 +L GL+ S RI S G + + E LA+SL+A +N++ Sbjct: 2 AFINTLEQCVSVAGLAIKASTGRIESSGMGSTMWRNKLKHFLRESNCALAVSLNATTNEV 61 Query: 251 RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP 310 RN ++PINRKY L +L+ R + ++ FEYVML G+NDS DA LI +++GIP Sbjct: 62 RNWVMPINRKYNLSLLLQTLREELRSKHNYKVLFEYVMLAGVNDSLEDARRLIDLVQGIP 121 Query: 311 AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 K+NLI FNP G ++ + ++ I+ F + +G +R RG D +AACGQL Sbjct: 122 CKVNLISFNPHCGSQFKPTSEEKIIEFRNILAEAGCIVFLRPSRGDDQMAACGQL 176 >gi|188996350|ref|YP_001930601.1| Radical SAM domain protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188931417|gb|ACD66047.1| Radical SAM domain protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 269 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 75/278 (26%), Positives = 127/278 (45%), Gaps = 34/278 (12%) Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 IE+V R TLCVSSQVGCS+ C+FC +G L+RNL+++EI+ Q Sbjct: 14 LLEIKTDDGYTIESV----HYRTTLCVSSQVGCSVRCAFCASGLNGLIRNLSSQEIINQF 69 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 +A+ G +I+NI G+GEPL NF+NVK++ +GL Sbjct: 70 EIAKDQ------------------GFEITNIAFAGIGEPLLNFENVKQAFDYFKS-IGL- 109 Query: 212 FSKRRITLSTSGF-VPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 +++ T+GF + + L +SLH+V + R L+P + +E LI Sbjct: 110 ----KVSFYTTGFPIKYFKELLHLNHDGLTLSLHSVLEEKRKSLIPNSH--SIEELIQVF 163 Query: 271 RHYPG-LSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL 327 ++ LS+ +R + Y+++ G NDS + L I K + ++L+ +N + Sbjct: 164 ENHLKTLSSRKRKLYSIGYLLIYGENDSDEELEALANIAKRLNIGVSLLKYNEIESLPFK 223 Query: 328 CSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + ++ +K G + + + CG L Sbjct: 224 TTPDEEYEKAFLKLKSHGVRTTLSNRYRTRKIGGCGTL 261 >gi|222872785|gb|EEF09916.1| predicted protein [Populus trichocarpa] Length = 302 Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats. Identities = 72/119 (60%), Positives = 94/119 (78%) Query: 3 FLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH 62 ++K+ LIG+ REE+ +AL IG+P+R V MR Q+W W+YVRG+ DF M +IS+E+R Sbjct: 184 TVEKKPLIGLSREEMAQALASIGVPERQVNMRVRQLWHWLYVRGVSDFSRMFNISKELRA 243 Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 L++HF+I PEIV+E+IS DGTRKWLLRFP R G PVE+ETVYIPE+ RGTLC+SSQ Sbjct: 244 KLDEHFTIARPEIVEEQISQDGTRKWLLRFPPRGAGRPVEVETVYIPEEDRGTLCISSQ 302 >gi|163785797|ref|ZP_02180287.1| hypothetical protein HG1285_18936 [Hydrogenivirga sp. 128-5-R1-1] gi|159878935|gb|EDP72949.1| hypothetical protein HG1285_18936 [Hydrogenivirga sp. 128-5-R1-1] Length = 265 Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats. Identities = 74/281 (26%), Positives = 123/281 (43%), Gaps = 35/281 (12%) Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 L + IE+V+ TLCVSSQVGC + C+FC +G + L+RNL+ EEI+ Sbjct: 6 LNKLYEFETKDSYTIESVFYR---GNTLCVSSQVGCPVECAFCASGMKGLIRNLSFEEII 62 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 Q S I+NI G+GEPL N+DNVKK+ Sbjct: 63 DQY--------------------ENSDKENITNITFAGIGEPLLNWDNVKKAFFYF-KEK 101 Query: 209 GLSFSKRRITLSTSGF-VPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267 GL +++ T+GF V N + + +S+HAV+ + R L+P + + LI Sbjct: 102 GL-----KVSFYTTGFPVKNFKELLNLPHNGITLSIHAVNEEKRKKLIP--KSVDFDKLI 154 Query: 268 DACRHYPGL---SNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGC 324 + + + + + Y+++K +NDS + L +I K + ++L+ FN G Sbjct: 155 ETFKQHLDKLSKRKKKNYSIAYLLIKNVNDSKEELKKLAEIAKYLQVGVSLLKFNEIEGI 214 Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + + ++ +K G + + CG L Sbjct: 215 NFKTTPDEEYEKAFLFLKNEGVKVTLSNKYRTRKIGGCGTL 255 >gi|294955468|ref|XP_002788520.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] gi|239904061|gb|EER20316.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] Length = 242 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 55/187 (29%), Positives = 82/187 (43%), Gaps = 19/187 (10%) Query: 210 LSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 +R IT+ST G +P I + + GV LA+SLHA + LR +VP + + ++ L+ Sbjct: 5 FGIPQRCITVSTVGVIPRIRSLAHDASGVKLALSLHAPTQALREKIVPSAKAWSIDELMA 64 Query: 269 ACRHYPGLSN--------------ARRITFEYVMLKGINDSPRDALNLIKILKGIPAKIN 314 A Y S + EYV+++ +ND+ A L ++K A +N Sbjct: 65 AVDEYSEASRVAGRPDGSGGGGRKKGSVMIEYVVIRDVNDTEECAHQLGVLMKNRKAVVN 124 Query: 315 LIPFNPWP-GCEYLCSDQKDIVTFSECIKR-SGYSSPIRTPRGLDILAACGQLKSLSKRI 372 IP+N G + + + +K G R G DI AACGQL KR Sbjct: 125 FIPYNAVDNGSNFEPPLESSVTRMVSILKDVYGVRVYYRRHHGRDIDAACGQLA--KKRP 182 Query: 373 PKVPRQE 379 VP E Sbjct: 183 RMVPDLE 189 >gi|237756412|ref|ZP_04584954.1| radical SAM protein [Sulfurihydrogenibium yellowstonense SS-5] gi|237691428|gb|EEP60494.1| radical SAM protein [Sulfurihydrogenibium yellowstonense SS-5] Length = 269 Score = 170 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 75/278 (26%), Positives = 127/278 (45%), Gaps = 34/278 (12%) Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 IE+V R TLCVSSQVGCS+ C+FC +G L+RNL+++EI+ Q Sbjct: 14 LLEIKTDDGYTIESV----HYRTTLCVSSQVGCSVRCAFCASGLNGLMRNLSSQEIINQY 69 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 +A+ G +I+NI G+GEPL NF+NVK++ +GL Sbjct: 70 EIAKD------------------KGFEITNIAFAGIGEPLLNFENVKQAFDYFKS-IGL- 109 Query: 212 FSKRRITLSTSGF-VPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 +++ T+GF + + L +SLH+V + R L+P + +E LI Sbjct: 110 ----KVSFYTTGFPIKYFKELLHLNHDGLTLSLHSVLEEKRKSLIPNSH--SIEELIQVF 163 Query: 271 RHYPG-LSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL 327 ++ LS+ +R + Y+++ G NDS + L I K + + L+ +N + Sbjct: 164 ENHLKTLSSRKRKLYSIGYLLIYGENDSDEELEALANIAKRLNIGVFLLKYNEIESLPFK 223 Query: 328 CSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + ++ +K +G + + + CG L Sbjct: 224 TTPDEEYEKAFLKLKSNGVRTTLSNRYRTRKIGGCGTL 261 >gi|330894490|gb|EGH27151.1| radical SAM protein [Pseudomonas syringae pv. mori str. 301020] Length = 131 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 57/129 (44%), Positives = 80/129 (62%), Gaps = 9/129 (6%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K +L+G+ ++E+E+ IG R R Q+ KWI+ G+ DF M+++S+ +R L Sbjct: 12 KTNLLGLTQQEMEKFFDSIG----EKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLK 67 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 + PE+V E IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC+ Sbjct: 68 ACAEVRGPEVVSEDISSDGTRKWVVRVES-----GSCVETVYIPQGKRGTLCVSSQAGCA 122 Query: 126 LTCSFCYTG 134 L CSFC TG Sbjct: 123 LDCSFCSTG 131 >gi|307108510|gb|EFN56750.1| hypothetical protein CHLNCDRAFT_22096 [Chlorella variabilis] Length = 204 Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats. Identities = 56/174 (32%), Positives = 91/174 (52%), Gaps = 23/174 (13%) Query: 217 ITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276 IT+ST G +P + R E ++A+SLHA ++++R+ +VP+NR+ L+ LI+ Sbjct: 2 ITVSTVGLIPEMRRFSRESRAVMAVSLHATTDEVRDWIVPVNRREGLQALIECMEELFPK 61 Query: 277 S-----NARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 S + + EY+ML+G+NDS DA L+++ + I KINLI FNP G + S Sbjct: 62 SSAAPRHGHHVLIEYIMLRGVNDSDDDARRLVQLTQSIRCKINLIVFNPHAGTSFQPSTP 121 Query: 332 KDIVTFSECIKRSG------------------YSSPIRTPRGLDILAACGQLKS 367 + + F + ++ + + +R RG D +AACGQL S Sbjct: 122 ERVYAFRSILIQARRPQQHTHSLTATHTQPHCHVATVRDSRGDDQMAACGQLGS 175 >gi|226503103|ref|NP_001141039.1| hypothetical protein LOC100273119 [Zea mays] gi|194702344|gb|ACF85256.1| unknown [Zea mays] Length = 194 Score = 166 bits (420), Expect = 6e-39, Method: Composition-based stats. Identities = 68/160 (42%), Positives = 94/160 (58%), Gaps = 15/160 (9%) Query: 96 CIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLA 154 + IETV IP + R T+CVSSQVGC++ C FC+TG L ++L+ EI+ Q + A Sbjct: 12 SLEDGSVIETVIIPCARGRTTICVSSQVGCAMNCQFCFTGRMGLRKHLSTAEIVEQAVFA 71 Query: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSK 214 R L D G I+N+V MGMGEP N DNV K+ +I D GL FS Sbjct: 72 RRLFSDELGS--------------INNVVFMGMGEPFHNIDNVIKASAIMVDEQGLHFSP 117 Query: 215 RRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNIL 254 R++T+STSG VP + R +E LA+SL+A ++++ IL Sbjct: 118 RKVTVSTSGLVPQLKRFLQESNCSLAVSLNATTDEVVIIL 157 >gi|289548559|ref|YP_003473547.1| radical SAM protein [Thermocrinis albus DSM 14484] gi|289182176|gb|ADC89420.1| Radical SAM domain protein [Thermocrinis albus DSM 14484] Length = 270 Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats. Identities = 73/282 (25%), Positives = 120/282 (42%), Gaps = 40/282 (14%) Query: 88 WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147 +L + IE V+ TLCVS+QVGC++ C+FC +G+ L+RNL+ +EI Sbjct: 15 YLFQLED-----GSRIEAVFYRGD---TLCVSTQVGCAVGCAFCLSGSAGLLRNLSEDEI 66 Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207 +Q L + L I + G+GEPL N+ NV + Sbjct: 67 YMQYFLLKPFL-------------------PIRRVAFAGIGEPLMNYRNVLGAFERFKRE 107 Query: 208 MGLSFSKRRITLSTSG-FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEML 266 GL +T T+G + ++ + + + ISLH + LR L+P LE L Sbjct: 108 -GLG-----VTFYTTGHPIKHLPSLLDLPHRGVTISLHTLDPSLRKKLLPHAG--DLEEL 159 Query: 267 IDACRHY---PGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPG 323 I + Y +I+ Y++LKG+NDSP + +++K + L+ +N G Sbjct: 160 IALLKDYSKKISKRKKGKISLAYLLLKGVNDSPEEIKAFGRLVKELGFSATLLYYNDT-G 218 Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + ++ ++ G + T D L CG L Sbjct: 219 MGFQAVTPEEYSKAFLLLRSMGVRVTLSTRYRRDPLGGCGTL 260 >gi|319789396|ref|YP_004151029.1| Radical SAM domain protein [Thermovibrio ammonificans HB-1] gi|317113898|gb|ADU96388.1| Radical SAM domain protein [Thermovibrio ammonificans HB-1] Length = 271 Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 68/281 (24%), Positives = 118/281 (41%), Gaps = 34/281 (12%) Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 L R +E+V+ + LCVSSQVGC + C+FC +G + L RNL+AEEI Sbjct: 11 LNRLFIYETADGYRVESVFYKGER---LCVSSQVGCPVGCAFCASGLKGLKRNLSAEEIY 67 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 Q + I I + G+GEP N D+V +++ Sbjct: 68 AQY-------------------SLLKGELPIRGIAIAGIGEPALNADSVVEAIGRFKKE- 107 Query: 209 GLSFSKRRITLSTSGF-VPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267 ++T+S++G + ++ E L IS+HAV +R L + K P+E ++ Sbjct: 108 -----GLKVTVSSTGCDLEGFRKLVEAPHNGLTISVHAVKPHIRERLFKL--KQPIEKVL 160 Query: 268 DACRHYPGLSNARR---ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGC 324 + + S++ R Y+++KG+ND L ++ K + L+ +N G Sbjct: 161 EVVEEHLERSSSSRRKRFQLGYLLIKGVNDDEESLKLLAELAKRHRFTVMLMAYNEVEGL 220 Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + +++ ++ G + D L CG L Sbjct: 221 PFKGLSEEEYEKAFLKLRELGVRVTLSNRFRRDKLGGCGTL 261 >gi|288817723|ref|YP_003432070.1| putative Fe-S cluster redox enzyme [Hydrogenobacter thermophilus TK-6] gi|288787122|dbj|BAI68869.1| putative Fe-S cluster redox enzyme [Hydrogenobacter thermophilus TK-6] gi|308751322|gb|ADO44805.1| Radical SAM domain protein [Hydrogenobacter thermophilus TK-6] Length = 264 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 72/281 (25%), Positives = 119/281 (42%), Gaps = 36/281 (12%) Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 L R + +IE V+ TLC+S+QVGC++ C FC +G+ VRNLT EEIL Sbjct: 11 LNRLFVFELEDSNKIEAVFYRGD---TLCISTQVGCAIRCPFCLSGSAGFVRNLTYEEIL 67 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 Q L R L I I + G+GEPL N+ +V ++ + Sbjct: 68 AQYYLLRDTL-------------------PIKRIAVAGIGEPLMNYSHVIRAFWKFKEE- 107 Query: 209 GLSFSKRRITLSTSGFVP-NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267 +++ T+GF ++ + L IS+H+ ++ R L+P L LI Sbjct: 108 -----GLKVSFYTTGFPHIHLRELIHIPHNGLTISIHSTKSEKRRKLIPHGG--DLNALI 160 Query: 268 DACRH---YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGC 324 D R ++++ Y++LKG+NDS D K+++ + L+ +N Sbjct: 161 DMLREELPRMSKRKRKKVSLAYLLLKGVNDSYEDLEEFAKLVRDLGVSATLLYYNST--G 218 Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 + + + ++ G + T D L CG L Sbjct: 219 FFETMSKSEYEERFLYLRGYGIRVSLSTRFRKDSLGGCGTL 259 >gi|225848095|ref|YP_002728258.1| radical SAM enzyme, Cfr family [Sulfurihydrogenibium azorense Az-Fu1] gi|225643916|gb|ACN98966.1| radical SAM enzyme, Cfr family [Sulfurihydrogenibium azorense Az-Fu1] Length = 276 Score = 163 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 69/271 (25%), Positives = 112/271 (41%), Gaps = 30/271 (11%) Query: 97 IGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARS 156 IE+V R TLCVSSQVGCS+ CSFC +G L RNL+ +EI+ Q L+ + Sbjct: 19 TDDGYTIESV----HYRKTLCVSSQVGCSIKCSFCASGLNGLTRNLSFDEIINQYLMVKD 74 Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216 G +I +I G+GEPL N++NVK++ GLS S Sbjct: 75 ------------------KGYEIESIAFAGIGEPLLNWENVKQAFDYFKS-QGLSVSF-- 113 Query: 217 ITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYP--LEMLIDACRHYP 274 +T + N ++ + +SLH+V + R L+P + +++ D + Sbjct: 114 --YTTGFPISNFKQLLALNHDGVNLSLHSVFEEKRKSLIPNSHTISQLIQVFKDHLQQLS 171 Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDI 334 Y+++ G NDS + L +I K + ++L+ +N Y Sbjct: 172 NRKKKL-YNIAYILIYGENDSYEEIDKLGEIAKELGIGVSLLKYNEIEFFPYKSVPDDRY 230 Query: 335 VTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 ++ G + + CG L Sbjct: 231 EELFLRLREKGIRVTLSNKYRTRKIGGCGTL 261 >gi|294670880|ref|ZP_06735736.1| hypothetical protein NEIELOOT_02584 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307367|gb|EFE48610.1| hypothetical protein NEIELOOT_02584 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 120 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 46/113 (40%), Positives = 65/113 (57%), Gaps = 2/113 (1%) Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 + ACR Y + +TFEYVML GIND A L+ +++ +P K NLIPFNP+P Y Sbjct: 1 MAACRRYLVKAPRDFVTFEYVMLDGINDKAEHARELLALVRDVPCKFNLIPFNPFPNSGY 60 Query: 327 LCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQE 379 S ++I F + ++++G +R RG DI AACGQL + K RQ+ Sbjct: 61 ERSSSENIRIFRDILQQAGLVVTVRKTRGDDIDAACGQLAGQVQ--DKTRRQQ 111 >gi|313625007|gb|EFR94900.1| ribosomal RNA large subunit methyltransferase N [Listeria innocua FSL J1-023] Length = 130 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 43/139 (30%), Positives = 77/139 (55%), Gaps = 9/139 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K S+ G+ +L E L G + R +Q+W W+Y + ++ F+ MS++ +E L Sbjct: 1 MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +F + E + S DGT K+L + + IETV + ++ ++CV++QVG Sbjct: 57 LTANFVMNTLEEQVVQESTDGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRNL 142 C++ C+FC +G K R+L Sbjct: 112 CNIGCTFCASGLLKKSRDL 130 >gi|313620453|gb|EFR91838.1| ribosomal RNA large subunit methyltransferase N [Listeria innocua FSL S4-378] Length = 129 Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats. Identities = 42/138 (30%), Positives = 76/138 (55%), Gaps = 9/138 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K S+ G+ +L E L G + R +Q+W W+Y + ++ F+ MS++ +E L Sbjct: 1 MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +F + E + S DGT K+L + + IETV + ++ ++CV++QVG Sbjct: 57 LTANFVMNTLEEQVVQESTDGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVRN 141 C++ C+FC +G K R+ Sbjct: 112 CNIGCTFCASGLLKKSRD 129 >gi|325295135|ref|YP_004281649.1| Radical SAM domain protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065583|gb|ADY73590.1| Radical SAM domain protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 270 Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats. Identities = 68/289 (23%), Positives = 126/289 (43%), Gaps = 35/289 (12%) Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 L + ++E+V+ + LC+S+QVGC + C FC +G++ RNLT EI+ Sbjct: 11 LNKLFVYETDDGYKVESVFYKGER---LCISTQVGCPIGCIFCASGSKGFFRNLTFAEIV 67 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 Q L R +L I I + G+GEP N NV+K+++ + Sbjct: 68 TQYELLRDIL-------------------PIKGIAIAGIGEPALNISNVEKAVNYFRNE- 107 Query: 209 GLSFSKRRITLSTSGFV-PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267 ++T+ST+G+ N ++ L +S+H + N R + +K LE L+ Sbjct: 108 -----GLKVTISTAGYPLENFKKLIRLNHNGLTLSVHGILNKTREKIFK--KKENLEELL 160 Query: 268 DACRHYPGLSNARR---ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGC 324 +A + S++ R Y+++K +ND + L ++ K + L+ +N G Sbjct: 161 NAVDEHLSESSSSRRKKFQLGYLLIKDLNDDLENLRLLGELAKKYRFTVMLMMYNKVDGF 220 Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIP 373 + + + ++ G + +D L CG L ++ +RI Sbjct: 221 DLEPVTKDEYEKAFLFLREMGVRVTLSNRFRIDKLGGCGTL-TVGRRIE 268 >gi|313610614|gb|EFR85708.1| ribosomal RNA large subunit methyltransferase N [Listeria monocytogenes FSL F2-208] Length = 129 Score = 160 bits (404), Expect = 4e-37, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 75/137 (54%), Gaps = 9/137 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K S+ G+ +L E L G + R +Q+W W+Y + ++ F+ MS++ +E L Sbjct: 1 MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +F + E + S DGT K+L + + IETV + ++ ++CV++QVG Sbjct: 57 LTANFVMNTLEEQVVQESADGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVR 140 C++ C+FC +G K R Sbjct: 112 CNIGCTFCASGLLKKSR 128 >gi|212634295|ref|YP_002310820.1| hypothetical protein swp_1447 [Shewanella piezotolerans WP3] gi|212555779|gb|ACJ28233.1| Conserved hypothetical protein [Shewanella piezotolerans WP3] Length = 137 Score = 159 bits (403), Expect = 5e-37, Method: Composition-based stats. Identities = 50/131 (38%), Positives = 74/131 (56%), Gaps = 9/131 (6%) Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFS 69 + + R+ + +G R Q+ KW+Y G+ DF+ M++I++ +R L + Sbjct: 1 MDLDRKSMRALFADMG----EKPFRADQLMKWLYHFGVSDFEQMTNINKALRAKLARKCE 56 Query: 70 IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129 I+ P+I + S DGT K+ + +G E+ETVYIPE R TLCVSSQVGC+L C+ Sbjct: 57 IVAPKIASYQKSADGTIKFAI-----DVGNGQEVETVYIPEDDRATLCVSSQVGCALECT 111 Query: 130 FCYTGTQKLVR 140 FC TG Q R Sbjct: 112 FCSTGAQGFNR 122 >gi|315281046|ref|ZP_07869770.1| ribosomal RNA large subunit methyltransferase N [Listeria marthii FSL S4-120] gi|313615310|gb|EFR88731.1| ribosomal RNA large subunit methyltransferase N [Listeria marthii FSL S4-120] Length = 128 Score = 159 bits (402), Expect = 8e-37, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 74/137 (54%), Gaps = 9/137 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K S+ G+ L E L G + R +Q+W W+Y + ++ F+ MS++ +E L Sbjct: 1 MEKSSIYGLTWTNLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVG 123 L +F + E + S DGT K+L + + IETV + ++ ++CV++QVG Sbjct: 57 LTANFVMNTLEEQVVQESADGTTKYLFKLSDGNL-----IETVMMKQEYGLSVCVTTQVG 111 Query: 124 CSLTCSFCYTGTQKLVR 140 C++ C+FC +G K R Sbjct: 112 CNIGCTFCASGLLKKSR 128 >gi|163781579|ref|ZP_02176579.1| hypothetical protein HG1285_01813 [Hydrogenivirga sp. 128-5-R1-1] gi|159882799|gb|EDP76303.1| hypothetical protein HG1285_01813 [Hydrogenivirga sp. 128-5-R1-1] Length = 274 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 73/296 (24%), Positives = 129/296 (43%), Gaps = 38/296 (12%) Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 L R + +E V+ TLCVS+QVGC + C FC +G + L+RNL+ EEI+ Sbjct: 11 LNRLFIFELEDGFAVEAVHYRGD---TLCVSTQVGCHVRCGFCASGRRGLIRNLSEEEIV 67 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 Q L R ++ I + G+GEPL N+D+V+ + + Sbjct: 68 SQYELVR-------------------PKFEVRRIAVAGIGEPLANWDSVRGAFYRFKE-- 106 Query: 209 GLSFSKRRITLSTSGFV-PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267 S R++ T+G+ N+ + +++S+H++ R L+P L LI Sbjct: 107 ---LS-LRVSFYTTGYPLKNLRELLHMPHGGVSLSIHSLDRSTRKELMPYAG--DLGRLI 160 Query: 268 DACR-HYPGLSNARR--ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGC 324 D R P L+ +R ++ Y+++KG+NDS + + L K+ + + + L+ +N Sbjct: 161 DFLRGELPSLTGKKRKKVSLAYLLIKGVNDSEDELIELGKLARELGVGVTLLYYNQV--S 218 Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEM 380 Y ++ ++ G + D + CG L R + QE+ Sbjct: 219 SYPQLTPEEYERAFLLLRSMGVKVTLSNRFRKDKIGGCGTL--TVDRNADIKSQEV 272 >gi|300858725|ref|YP_003783708.1| hypothetical protein cpfrc_01308 [Corynebacterium pseudotuberculosis FRC41] gi|300686179|gb|ADK29101.1| hypothetical protein cpfrc_01308 [Corynebacterium pseudotuberculosis FRC41] Length = 213 Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats. Identities = 55/188 (29%), Positives = 86/188 (45%), Gaps = 24/188 (12%) Query: 2 NFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 + + EE AL ++G+P + R +QI + Y R D + M+D+ VR Sbjct: 45 RSMPPKHFADYTVEERISALKELGLP----KFRANQIARHYYGRLEADPRTMTDLPAGVR 100 Query: 62 HLLNQH-FSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 + + F ++ I + T+K L + + +E+V + +R TLC+SS Sbjct: 101 EKVQEKLFPVLMNPIRAIETDAGETQKTLWQLHDGTL-----LESVLMRYPNRATLCISS 155 Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 Q GC + C FC TG L RNL+ EI+ QV A + + G ++S Sbjct: 156 QAGCGMACPFCATGQGGLDRNLSTAEIVDQVRAA--------------SATMNAEGGRLS 201 Query: 181 NIVMMGMG 188 NIV MGMG Sbjct: 202 NIVFMGMG 209 >gi|255640205|gb|ACU20393.1| unknown [Glycine max] Length = 271 Score = 156 bits (394), Expect = 7e-36, Method: Composition-based stats. Identities = 70/251 (27%), Positives = 113/251 (45%), Gaps = 48/251 (19%) Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIY---VRGIRDFQ-GMSDISQEVRHLLNQHF-SI 70 EL + K GI + + +IWK I D++ + + LL +F + Sbjct: 11 ELRREVEKSGIDPKFIP----KIWKHILISAKDEDWDWEKQVPSLPSSAYSLLRSNFKTP 66 Query: 71 IYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRG--------------T 115 + I S D T K L++ +E V + +R T Sbjct: 67 LSSSIHSVFHSADNLTTKLLIQLHHNH---GPFVEAVIMRYDTRLGKYAGQPRPGGLRAT 123 Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175 LC+SSQVGC + C+FC TG+ NL++ EI+ Q++ A S Sbjct: 124 LCISSQVGCKMGCNFCATGSMGFKNNLSSGEIVEQLVHA-------------------ST 164 Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI 235 +I N+V MGMGEPL N+ V +++ I + + S +RIT+ST G + I ++ +++ Sbjct: 165 FSQIRNVVFMGMGEPLNNYSAVVEAVRIMT-GLPFQLSSKRITISTVGIIHAINKLHDDL 223 Query: 236 G-VMLAISLHA 245 + LA+SLHA Sbjct: 224 PGLNLAVSLHA 234 >gi|270593980|ref|ZP_06221492.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae HK1212] gi|270318367|gb|EFA29514.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae HK1212] Length = 129 Score = 153 bits (386), Expect = 5e-35, Method: Composition-based stats. Identities = 48/118 (40%), Positives = 64/118 (54%), Gaps = 4/118 (3%) Query: 266 LIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPG 323 +ID+ Y +SNA ++T EYVML +ND A L ++LK P KINLIP+NP+P Sbjct: 1 MIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGIEHAHQLAEVLKNTPCKINLIPWNPFPE 60 Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQ 381 Y S I F + + G++ IR RG DI AACGQL I + R M+ Sbjct: 61 APYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAACGQLAGDV--IDRTKRTAMK 116 >gi|295113298|emb|CBL31935.1| hypothetical protein [Enterococcus sp. 7L76] Length = 114 Score = 148 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 42/115 (36%), Positives = 64/115 (55%), Gaps = 4/115 (3%) Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGC 324 + A Y +N R+TFEY+ML +ND P A L +L+ + +NLIP+NP Sbjct: 1 MAAIDEYIEKNNR-RVTFEYIMLSQVNDRPEHAQQLADLLRNKKKLSYVNLIPYNPVSEH 59 Query: 325 E-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQ 378 + Y S ++ ++ F + +K++G + IR G DI AACGQL+S + KV Q Sbjct: 60 DQYSRSSKEAVLKFYDVLKKNGINCVIRKEHGTDIDAACGQLRSKQMKKEKVKNQ 114 >gi|291287083|ref|YP_003503899.1| Radical SAM domain protein [Denitrovibrio acetiphilus DSM 12809] gi|290884243|gb|ADD67943.1| Radical SAM domain protein [Denitrovibrio acetiphilus DSM 12809] Length = 256 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 64/285 (22%), Positives = 111/285 (38%), Gaps = 51/285 (17%) Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV 151 + +ETVY GTLC+S+Q GC + C FC +G L RNL+++E+ QV Sbjct: 5 LLPLELSDGFCLETVYY---ESGTLCISTQAGCRMACPFCASGRVGLKRNLSSDELFTQV 61 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 G I + + G+GEPL NF+ VK+ + Sbjct: 62 --------------------ELHKGNDIKRVTLSGIGEPLDNFEVVKEFIK--------- 92 Query: 212 FSKRRITLSTSGFVPNIARVGEEI---GVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 K +S + VP+ ++ E + + +S HA ++ R L+P + L+ + Sbjct: 93 --KSGYPVSVTTSVPDTEKLKELLKLSHNGVMLSFHAGFDETRKKLIPKACQ--LDEIFH 148 Query: 269 ACRHY---PGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP-AKINLIPFNPWPGC 324 A ++ +++ F Y++L GINDS + + ++L+ N G Sbjct: 149 AVSEVWSEISVNKRKKVGFNYMLLDGINDSAEELDAFAGQVTNFKEVTVHLLVCNDVSGS 208 Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPI----RTPRGLDILAACGQL 365 + E ++ +G + R CG L Sbjct: 209 SFKSPSVCVFTDAYELLRNNGLNVRRANNWRKS----SNGGCGTL 249 >gi|146319329|ref|YP_001199041.1| Fe-S-cluster redox protein [Streptococcus suis 05ZYH33] gi|145690135|gb|ABP90641.1| Predicted Fe-S-cluster redox enzyme [Streptococcus suis 05ZYH33] Length = 140 Score = 147 bits (372), Expect = 3e-33, Method: Composition-based stats. Identities = 46/123 (37%), Positives = 73/123 (59%), Gaps = 4/123 (3%) Query: 255 VPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AK 312 + INRK+P+E+L +A Y ++N R+TFEY+ML +ND A L + K I + Sbjct: 1 MRINRKFPIEVLFEAIEDYIKVTNR-RVTFEYIMLNEVNDGVEQAQELADLTKNIRKLSY 59 Query: 313 INLIPFNPWPGCE-YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKR 371 INLIP+NP + Y S ++ + F + +K++G + +R G DI AACGQL+S + + Sbjct: 60 INLIPYNPVSEHDQYSRSTKERTLAFFDVLKKNGVNCVVRQEHGTDIDAACGQLRSNTLK 119 Query: 372 IPK 374 + Sbjct: 120 KDR 122 >gi|297733650|emb|CBI14897.3| unnamed protein product [Vitis vinifera] Length = 133 Score = 146 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 47/111 (42%), Positives = 68/111 (61%) Query: 255 VPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKIN 314 +PINRKY L +L+ R + ++ FEYVML G+NDS DA LI +++GIP K+N Sbjct: 1 MPINRKYNLSLLLQTLREELRSKHNYKVLFEYVMLAGVNDSLEDARRLIDLVQGIPCKVN 60 Query: 315 LIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365 LI FNP G ++ + ++ I+ F + +G +R RG D +AACGQL Sbjct: 61 LISFNPHCGSQFKPTSEEKIIEFRNILAEAGCIVFLRPSRGDDQMAACGQL 111 >gi|294942772|ref|XP_002783678.1| hypothetical protein Pmar_PMAR008379 [Perkinsus marinus ATCC 50983] gi|239896201|gb|EER15474.1| hypothetical protein Pmar_PMAR008379 [Perkinsus marinus ATCC 50983] Length = 188 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 67/157 (42%), Gaps = 18/157 (11%) Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN--------------ARRITF 284 LA+SLHA + LR +VP + + ++ L+ A Y S + Sbjct: 2 LALSLHAPNQALREKIVPSAKAWSIDELMAAVDEYSEASRVAGRPDGSGGGGRKKGSVMI 61 Query: 285 EYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP-GCEYLCSDQKDIVTFSECIKR 343 EYV+++ +ND+ A L ++K A +N IP+N G + + + +K Sbjct: 62 EYVVIRDVNDTEECAHQLGVLMKNRKAVVNFIPYNAVDNGSNFEPPLESSVTRMVSILKD 121 Query: 344 -SGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQE 379 G R G DI AACGQL KR VP E Sbjct: 122 VYGVRVYYRRHHGRDIDAACGQLA--KKRPRMVPDLE 156 >gi|330975901|gb|EGH75967.1| hypothetical protein PSYAP_04494 [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 120 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 43/97 (44%), Positives = 57/97 (58%), Gaps = 1/97 (1%) Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341 +T EY MLK IND A+ +I++LK P KINLIPFNP+P Y I F + + Sbjct: 3 LTIEYTMLKDINDKVEHAVEMIELLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDLL 62 Query: 342 KRSGYSSPIRTPRGLDILAACGQL-KSLSKRIPKVPR 377 ++GY+ +RT RG DI AACGQL + R + R Sbjct: 63 HQAGYNVTVRTTRGEDIDAACGQLVGQVMDRTRRSER 99 >gi|190150593|ref|YP_001969118.1| UPF0063 protein yfgB [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189915724|gb|ACE61976.1| UPF0063 protein yfgB [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 110 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 37/98 (37%), Positives = 52/98 (53%) Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341 +T EYV+L +ND A L ++LK P KINLIP+NP+P Y S + F + + Sbjct: 1 MTIEYVLLDHVNDGTEHAHQLAEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTL 60 Query: 342 KRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQE 379 G++ +R RG DI AACGQL K ++ Sbjct: 61 MEYGFTVIVRKTRGDDIDAACGQLAGDVIDRTKRTMEK 98 >gi|15610017|ref|NP_217396.1| hypothetical protein Rv2880c [Mycobacterium tuberculosis H37Rv] gi|148662724|ref|YP_001284247.1| hypothetical protein MRA_2905 [Mycobacterium tuberculosis H37Ra] gi|1403400|emb|CAA98356.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv] gi|148506876|gb|ABQ74685.1| hypothetical protein MRA_2905 [Mycobacterium tuberculosis H37Ra] Length = 275 Score = 141 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 55/183 (30%), Positives = 76/183 (41%), Gaps = 23/183 (12%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN- 65 L + A+ ++G+P R Q+ Y R I D + M+D+ VR + Sbjct: 17 RHLADLDAAGRASAVAELGLPA----FRAKQLAHQYYGRLIADPRQMTDLPAAVRDRIAG 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125 F + D TRK L R E+V + R T+C+SSQ GC Sbjct: 73 AMFPNLLTASADITCDAGQTRKTLWR-----AVDGTMFESVLMRYPRRNTVCISSQAGCG 127 Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185 + C FC TG L RNL+ EIL QV + L D G ++SN+V M Sbjct: 128 MACPFCATGQGGLTRNLSTAEILEQVRAGAAALRD-------------DFGDRLSNVVFM 174 Query: 186 GMG 188 GMG Sbjct: 175 GMG 177 >gi|299535923|ref|ZP_07049243.1| ribosomal RNA large subunit methyltransferase N [Lysinibacillus fusiformis ZC1] gi|298728675|gb|EFI69230.1| ribosomal RNA large subunit methyltransferase N [Lysinibacillus fusiformis ZC1] Length = 94 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 34/89 (38%), Positives = 54/89 (60%) Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341 ++FEY ++ G NDS A L ++KGI +NLIP N P +Y+ + + I F + + Sbjct: 1 MSFEYGLMSGENDSVEIAEELSALIKGIKCHVNLIPVNYVPERDYVRTSRSQIFAFEKTL 60 Query: 342 KRSGYSSPIRTPRGLDILAACGQLKSLSK 370 K++G + IR +G DI AACGQL++ + Sbjct: 61 KKNGINVTIRREQGSDIAAACGQLRAQER 89 >gi|149922669|ref|ZP_01911096.1| hypothetical protein PPSIR1_19869 [Plesiocystis pacifica SIR-1] gi|149816466|gb|EDM75965.1| hypothetical protein PPSIR1_19869 [Plesiocystis pacifica SIR-1] Length = 291 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 75/314 (23%), Positives = 122/314 (38%), Gaps = 39/314 (12%) Query: 74 EIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133 IV+E DG R++++ + +E V +LCVSSQVGC++ C FC + Sbjct: 3 RIVEEHREGDGNRRFVV-----GLDDGASVEAVLYRLD---SLCVSSQVGCAVGCPFCAS 54 Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193 G L R L E+ QV R+ IE P + + + G+GEPL N Sbjct: 55 GANGLDRPLRLGELTGQVEAVRAH---------IEATDGPEAALALRRVTVSGVGEPLHN 105 Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV-------MLAISLHAV 246 + V + + + +L+TSG + R+GE + + S+HA Sbjct: 106 HEPVAQFVRWCRERD------MPASLTTSGGP--LRRLGEWLDPDAAPPHNGITFSIHAG 157 Query: 247 SNDLRNILVPINRKY-PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 R VP PL L+ S R++ Y++L +ND + ++ Sbjct: 158 REATRARTVPRGPALGPLFSLLGEAIPRLSRSRKRKLALAYLLLADLNDGDEEIDAFLER 217 Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTP---RGLDILAAC 362 + KI+L +NP P E ++ G +R R D C Sbjct: 218 AAPLGVKIHLYRYNPVPTSTQAPVSDARYQAIFERVRAVGLD--VRRSSQARIED-NGGC 274 Query: 363 GQLKSLSKRIPKVP 376 G L +L + ++ Sbjct: 275 GTLIALRRPERRLR 288 >gi|168027205|ref|XP_001766121.1| predicted protein [Physcomitrella patens subsp. patens] gi|162682764|gb|EDQ69180.1| predicted protein [Physcomitrella patens subsp. patens] Length = 180 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 60/203 (29%), Positives = 88/203 (43%), Gaps = 31/203 (15%) Query: 70 IIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCS 129 + I S DGT + LL + V I Y SR T C VGC+L C+ Sbjct: 1 VGRSPIHHFITSKDGTVQVLLSLEDDRLVEAVGIPVTYRKGGSRLTDC----VGCALNCT 56 Query: 130 FCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 FC TG RNL + EI+ + + + LL + ++N+V MGMGE Sbjct: 57 FCCTGKDGFARNLKSHEIVDRACILQDLLR-----------------KPMTNMVFMGMGE 99 Query: 190 PLCNFDNVKKSLSIASDSMGLSF-------SKRRITLSTSGFVPNIARVG-EEIGVMLAI 241 PL N V S + L +++ + + T G + I R+ + ML + Sbjct: 100 PLINLGAVLD--DHLSKTDVLYIIIQESKTAQQMMVILTVGILNTIRRLAPHKFHSMLVV 157 Query: 242 SLHAVSNDLRNILVPINRKYPLE 264 SLHA + LR+ LVP +Y L+ Sbjct: 158 SLHAPNQGLRSKLVPSANRYSLD 180 >gi|325849044|ref|ZP_08170536.1| ribosomal RNA large subunit methyltransferase N family protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480289|gb|EGC83352.1| ribosomal RNA large subunit methyltransferase N family protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 126 Score = 133 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 43/132 (32%), Positives = 74/132 (56%), Gaps = 10/132 (7%) Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65 K+++ EELE+ L +G + R Q+++ I+V I DF M+D+S+++R L+ Sbjct: 2 KQTINDKTIEELEKIFLDLGF----KKFRAKQVFRQIHVNKINDFSKMTDLSKKMREDLD 57 Query: 66 QHFSIIYPEIVDEKISC-DGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 ++F ++V E S D T+K+L + I IE V++ +R T+C+SSQVGC Sbjct: 58 KYFYFPKIKVVKEFKSNLDKTKKYLFELDDKNI-----IEAVFMEYNNRNTICISSQVGC 112 Query: 125 SLTCSFCYTGTQ 136 + C FC + + Sbjct: 113 RMGCKFCASTKK 124 >gi|325918563|ref|ZP_08180675.1| hypothetical protein XVE_4704 [Xanthomonas vesicatoria ATCC 35937] gi|325535220|gb|EGD07104.1| hypothetical protein XVE_4704 [Xanthomonas vesicatoria ATCC 35937] Length = 126 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 40/110 (36%), Positives = 58/110 (52%), Gaps = 10/110 (9%) Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIP--------AKINLIPFNPWPGCEYLC 328 +TFEY ++KGIND P A L ++++ K+NLIPFNP+PG Y Sbjct: 2 KKRDSVTFEYTLMKGINDQPEHARQLARLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYER 61 Query: 329 SDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQ 378 S + +I F + + + + +R RG DI AACGQLK + + RQ Sbjct: 62 SGETEIRAFQKILLDAQVLTMVRRTRGDDIDAACGQLKGQV--MDRTRRQ 109 >gi|167951358|ref|ZP_02538432.1| radical SAM enzyme, Cfr family protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 133 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 63/120 (52%), Positives = 80/120 (66%), Gaps = 1/120 (0%) Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +SLHA +N+LR+ LVPIN+KYPLE LI ACR + R+IT+EYVML GINDS + A Sbjct: 1 MSLHAPTNELRDQLVPINQKYPLEELIPACRDFIKGDKRRKITWEYVMLDGINDSIQHAK 60 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR-TPRGLDIL 359 LI++L+G P+K+NLIPFNP+PG Y S + S SG SSP+ P G DI Sbjct: 61 ALIRLLEGTPSKLNLIPFNPFPGTSYKTSPRGAGRGISPAPDESGASSPLPARPAGEDID 120 >gi|255030761|ref|ZP_05302712.1| hypothetical protein LmonL_19616 [Listeria monocytogenes LO28] Length = 137 Score = 129 bits (324), Expect = 8e-28, Method: Composition-based stats. Identities = 39/144 (27%), Positives = 76/144 (52%), Gaps = 17/144 (11%) Query: 45 RGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIE 104 + ++ F+ MS++ +E LL +F + E + S DGT K+L + + IE Sbjct: 1 KRVKTFEEMSNVPKETIELLTANFVMNTLEEQVVQESTDGTTKYLFKLSDGNL-----IE 55 Query: 105 TVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC 164 TV + ++ ++CV++QVGC++ C+FC +G K R+LTA EI+ Q++ + Sbjct: 56 TVMMKQEYGLSVCVTTQVGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHY------- 108 Query: 165 EDIEGMVIPSVGRKISNIVMMGMG 188 + ++ ++S++V G+ Sbjct: 109 -----LDGRNLEERVSHVVGNGLA 127 >gi|217074618|gb|ACJ85669.1| unknown [Medicago truncatula] Length = 221 Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats. Identities = 59/234 (25%), Positives = 89/234 (38%), Gaps = 53/234 (22%) Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQ--------GMSDISQEVRHLLNQH 67 EL K GI + + + IWK I+ D + + L + Sbjct: 11 ELRTEFSKTGIDPKFIPI----IWKHIFRNSNSDSDYCNWEWEKHVPSLPCSAYSFLRSN 66 Query: 68 F-SIIYPEIVDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRG----------- 114 F + + + S D T K +++ +E V + +R Sbjct: 67 FKTPLSSSLDSIFHSSDNVTSKLVIKLQ-----NGEFVEAVIMRYDTRLGKYGGEPRPGG 121 Query: 115 ---TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMV 171 TLC+SSQVGC + C FC TG+ NL++ EI+ Q++ A Sbjct: 122 LRATLCISSQVGCKMGCKFCATGSMGFKSNLSSGEIVEQLVHA----------------- 164 Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS-DSMGLSFSKRRITLSTSGF 224 S I N+V MGMGEPL N+ V +S+ I S LS + R+ F Sbjct: 165 --SAFAHIRNVVFMGMGEPLNNYSAVVESVRIMSGSPFQLSLKRYRLNCWHHSF 216 >gi|154492443|ref|ZP_02032069.1| hypothetical protein PARMER_02077 [Parabacteroides merdae ATCC 43184] gi|154087668|gb|EDN86713.1| hypothetical protein PARMER_02077 [Parabacteroides merdae ATCC 43184] Length = 260 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 61/215 (28%), Positives = 85/215 (39%), Gaps = 35/215 (16%) Query: 112 SRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMV 171 R + VS+ GC + C FC TG K RNLTA+EI+ QV A G P + Sbjct: 57 ERWMIGVSTMSGCPVRCKFCATGNMKRYRNLTADEIVGQVEFAIEQAGFDPCDANE---- 112 Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231 I MGEP N + VK+++ S+ I +T +V I Sbjct: 113 --------FKINYTRMGEPFLNIEAVKEAIGRISE----------IYPNTHHYVSTIGIK 154 Query: 232 GEEI-----GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286 G + V L ISLH+ + RN L+P +K +E + R L +T Sbjct: 155 GSDFSFVKGNVTLQISLHSFDEEKRNWLIPYPKKMSIEE-LGRIRTESNLKTTINLTL-- 211 Query: 287 VMLKGINDSPRDALNLIKILKGIPAKINLIPFNPW 321 +N+S D L K + L P NP Sbjct: 212 -----VNESDFDTEKLEKYFDKEYFFVKLSPINPN 241 >gi|81999761|sp|Q5UP06|YR756_MIMIV RecName: Full=Uncharacterized protein R756 gi|55417366|gb|AAV51016.1| putative Fe-S-cluster redox enzyme [Acanthamoeba polyphaga mimivirus] Length = 298 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 62/287 (21%), Positives = 117/287 (40%), Gaps = 42/287 (14%) Query: 104 ETVYIPEKSRGTLC-VSSQVGCSLTCSFCY--TGTQKLVRNLTAEEILLQVLLARSLLGD 160 E Y+ + +SS GC + C FC+ Q R+++ EE Q+ S + Sbjct: 22 ECRYVRRNDKYISAYLSSHNGCKMACKFCWLTATNQTNFRHVSIEEYANQLDTVLSHGKE 81 Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN------FDNVKKSLSIASDSMGLSFSK 214 G V NI +M GE L N +D K L + +S+ Sbjct: 82 IDGENSRIVRV---------NINLMSRGEALANKNLVNNYDKFHKELQYIINK--YDYSE 130 Query: 215 RRITLSTSGFVPNI---ARVGE---EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 ++ +ST +P + ++ + + V + SL++ + R +P + +Y + + Sbjct: 131 MKMNVST--IMPKVVEHKKLIDIFGDRPVNIYYSLYSTNESFRKKWIPNSMRYEIA--LR 186 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA---KINLIPFNPWPG-C 324 R + ++ I F + +++ ND+ D ++ +I++ + K NL+ FNP P Sbjct: 187 KLREFQKETD-NTIAFHFAVIEDENDNLSDVQSMAEIIRSMNFSKTKFNLVRFNPHPSMS 245 Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPR-------GLDILAACGQ 364 Y + + E ++ I+T R G D+LA+CG Sbjct: 246 NYKEPSVEKLEKIYEILQSVCNDETIKTNRSRIVPRIGQDVLASCGM 292 >gi|311978166|ref|YP_003987286.1| putative radical SAM enzyme [Acanthamoeba polyphaga mimivirus] gi|308205034|gb|ADO18835.1| putative radical SAM enzyme [Acanthamoeba polyphaga mimivirus] Length = 298 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 63/287 (21%), Positives = 115/287 (40%), Gaps = 42/287 (14%) Query: 104 ETVYIPEKSRGTLC-VSSQVGCSLTCSFCY--TGTQKLVRNLTAEEILLQVLLARSLLGD 160 E Y+ + +SS GC + C FC+ Q R+++ EE Q+ S + Sbjct: 22 ECRYVRRNDKYISAYLSSHNGCKMACKFCWLTATNQTNFRHVSIEEYANQLDTVLSHGKE 81 Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN------FDNVKKSLSIASDSMGLSFSK 214 G V NI +M GE L N +D K L + +S+ Sbjct: 82 IDGENSRIVRV---------NINLMSRGEALANKNLVNNYDKFHKELQYIINK--YDYSE 130 Query: 215 RRITLSTSGFVPNIARVGEEI------GVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 ++ +ST +P + + I V + SL++ + R +P + +Y + + Sbjct: 131 MKMNVST--IMPKVIEHKKLIDIFGDRPVNIYYSLYSTNESFRKKWIPNSMRYEIA--LR 186 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA---KINLIPFNPWPG-C 324 R + ++ I F + +++ ND+ D ++ +I++ + K NL+ FNP P Sbjct: 187 KLREFQKETD-NTIAFHFAVIEDENDNLSDVQSMAEIIRSMNFSKTKFNLVRFNPHPSMS 245 Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPR-------GLDILAACGQ 364 Y + + E ++ I+T R G D+LA+CG Sbjct: 246 NYKEPSVEKLEKIYEILQSVCNDETIKTNRSRIVPRIGQDVLASCGM 292 >gi|320158412|ref|YP_004190790.1| radical SAM domain-containing protein [Vibrio vulnificus MO6-24/O] gi|319933724|gb|ADV88587.1| radical SAM domain protein [Vibrio vulnificus MO6-24/O] Length = 274 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 87/224 (38%), Gaps = 29/224 (12%) Query: 110 EKSRGTLCVSSQVGCSLTCSFCY----TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCE 165 + + +S+Q GC + C FC T Q RNLTA+E++ QV A G P Sbjct: 58 WSQKYMVGISTQSGCPIKCKFCAVNKLTARQGW-RNLTADEMVAQVEWAIEQAGHDP--- 113 Query: 166 DIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225 ++ I+ MGEP N NV +++ K RI +ST GF Sbjct: 114 ---------EDAQLFRILFTRMGEPAMNVKNVVEAVRRLKARY----PKVRIQVSTIGFG 160 Query: 226 PNIARVGEEI----GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281 + R+ + + L S+H+ SN+ R L + E + + R + + + Sbjct: 161 KHSQRLVNALYEFDNIELQFSIHSTSNEYRQWLQHKDVSSN-EDISELIREWHSVPREWK 219 Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE 325 +T + + +P D L + I + P N + Sbjct: 220 VTLNFALTTE---TPFDVKELRRQFNPDEVFIKVSPINENSESD 260 >gi|301119925|ref|XP_002907690.1| conserved hypothetical protein [Phytophthora infestans T30-4] gi|262106202|gb|EEY64254.1| conserved hypothetical protein [Phytophthora infestans T30-4] Length = 170 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 14/110 (12%) Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP-GCEYLCSDQKDIVTFSECIKR-SG 345 ML G+NDS A L K+L+ +NLIP+N G ++ +DI F ++ Sbjct: 1 MLAGVNDSIETAHTLGKLLQNRSVHVNLIPYNTTDVGAQFQSPSAEDIRAFHAVLREPYN 60 Query: 346 YSSPIRTPRGLDILAACGQLKSLSK------------RIPKVPRQEMQIT 383 + IR G DI ACGQL +K R K PR+ + + Sbjct: 61 LKATIRENHGTDIDGACGQLALKNKPDGSRDIEDLGPRRTKAPRKTKKSS 110 >gi|325116881|emb|CBZ52434.1| hypothetical protein NCLIV_022230 [Neospora caninum Liverpool] Length = 157 Score = 104 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 44/124 (35%), Positives = 63/124 (50%), Gaps = 20/124 (16%) Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192 G +R L+A+EI QVL G KI ++ +MGMGEPL Sbjct: 50 VGKSGFLRQLSADEITDQVLFFLRQ------------------GIKIDSVSLMGMGEPLA 91 Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLR 251 N V +L I +D + +FS R++ +ST G +P I ++ EE V LA SLH+ + R Sbjct: 92 NPK-VFDALRILTDPLLFNFSARKLAVSTLGVLPGIKKLTEEHPQVNLAFSLHSPFPEER 150 Query: 252 NILV 255 N+LV Sbjct: 151 NLLV 154 >gi|218681469|ref|ZP_03529356.1| hypothetical protein RetlC8_22681 [Rhizobium etli CIAT 894] Length = 94 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 34/73 (46%), Positives = 56/73 (76%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 +K SLIG+ REE+ AL + G+ ++ ++MR +Q+W WIYVRG+ DF M+++++++R +L Sbjct: 22 EKPSLIGLSREEMAAALREKGVAEKQIKMRVAQLWNWIYVRGVSDFDHMTNVAKDMREML 81 Query: 65 NQHFSIIYPEIVD 77 QHF+I PEIV+ Sbjct: 82 KQHFTIARPEIVE 94 >gi|227885422|ref|ZP_04003227.1| conserved hypothetical protein [Escherichia coli 83972] gi|227837605|gb|EEJ48071.1| conserved hypothetical protein [Escherichia coli 83972] Length = 80 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 43/85 (50%), Positives = 53/85 (62%), Gaps = 5/85 (5%) Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124 I PEIV + IS DGTRKW++R + +ETVYIP+ RGTLCVSSQ GC Sbjct: 1 KASAEIRGPEIVSQDISADGTRKWVVR-----VASGSCVETVYIPQGGRGTLCVSSQAGC 55 Query: 125 SLTCSFCYTGTQKLVRNLTAEEILL 149 +L CSFC TG Q +LTA E++ Sbjct: 56 ALDCSFCSTGKQGFNSDLTAAEVIG 80 >gi|313634809|gb|EFS01238.1| radical SAM enzyme, Cfr family [Listeria seeligeri FSL N1-067] gi|313639434|gb|EFS04296.1| radical SAM enzyme, Cfr family [Listeria seeligeri FSL S4-171] Length = 78 Score = 99.6 bits (247), Expect = 8e-19, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 4/82 (4%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K S+ G+ +L E L G + R +Q+W W+Y + ++ F+ MS++ +E L Sbjct: 1 MEKSSIYGLTWTKLTEWLEAHG----QKKFRATQVWDWLYRKRVKTFEEMSNVPKETIEL 56 Query: 64 LNQHFSIIYPEIVDEKISCDGT 85 L +F + E + S DGT Sbjct: 57 LTANFVMSTLEEQVVQESTDGT 78 >gi|240147168|ref|ZP_04745769.1| radical SAM enzyme, Cfr family [Roseburia intestinalis L1-82] gi|257200635|gb|EEU98919.1| radical SAM enzyme, Cfr family [Roseburia intestinalis L1-82] Length = 67 Score = 96.5 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 31/60 (51%) Query: 309 IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSL 368 + +NLIP NP Y+ D + I+ F ++++ + IR G DI ACGQL+ Sbjct: 1 MNCHVNLIPVNPIKERSYVQPDHEAILNFKNRLEKNAINVTIRREMGRDIDGACGQLRKR 60 >gi|189490583|ref|YP_001957153.1| Fe-S-cluster redox domain-containing protein [Pseudomonas phage 201phi2-1] gi|164609648|gb|ABY63257.1| hypothetical protein 201phi2-1p434 [Pseudomonas phage 201phi2-1] Length = 302 Score = 91.1 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 53/278 (19%), Positives = 95/278 (34%), Gaps = 42/278 (15%) Query: 111 KSRGTLCVSSQVGCSLTCSFCYTGTQKLV--RNLTAEEILLQVLLARSLLGDFPGCEDIE 168 + +SSQ GC C C+ R++T +E Q D + Sbjct: 40 DDYFIVYLSSQTGCKQACRMCWLTATGQTDSRDVTVQEYFEQAERVFDHYIDMVRNNHVG 99 Query: 169 GMVIPSVGRKISNIVMMGMGEPLCN------FDNVKKSLSIASDSMGLSFSKRRITLSTS 222 + M GEPL N D + + L ++ GL + + +ST Sbjct: 100 SAATK------VHFNFMARGEPLANKHFVENADEILRGLKRMAEQWGL---EAKFLISTI 150 Query: 223 -----GFVPNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276 GF + E+ L SL++++ R +P E +D + + Sbjct: 151 WPKEFGFTKLTDVFTDPEVYPELYYSLYSLNPKFRKQWLPKAAA--PETALDELKCWQEA 208 Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI--NLIPFNPWPGCEYLCSDQKDI 334 + Y + NDS D +I +K + K+ N++ +NP P Y ++ + Sbjct: 209 TGKTPK-IHYAFINDQNDSIGDVKAIIDEIKEVGLKVNWNIVRYNP-PEGHY---SKEPV 263 Query: 335 VTFSECIK--------RSGYSSPIRTPRGLDILAACGQ 364 + + + R G D+ A+CG Sbjct: 264 EGHVKYLHGFIQRHLPDAKVKLIPRV--GTDVKASCGT 299 >gi|302854259|ref|XP_002958639.1| hypothetical protein VOLCADRAFT_99921 [Volvox carteri f. nagariensis] gi|300256028|gb|EFJ40305.1| hypothetical protein VOLCADRAFT_99921 [Volvox carteri f. nagariensis] Length = 438 Score = 89.2 bits (220), Expect = 9e-16, Method: Composition-based stats. Identities = 50/170 (29%), Positives = 62/170 (36%), Gaps = 45/170 (26%) Query: 59 EVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE-------- 110 + R LL+ + D + DGTRK + R G IETV IP Sbjct: 176 KFRALLSLQ---GGLMLEDVTPASDGTRKLVFRVTEGEAAGG-RIETVLIPWFRDYDPRV 231 Query: 111 ----KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166 R TLCVSS QVL+A+ LL P Sbjct: 232 GRREHPRYTLCVSS-----------------------------QVLVAQRLLDQDPARPP 262 Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216 + I+NIV MGMGEPL N V ++ I + GL FS R Sbjct: 263 AATAATAATAAPITNIVFMGMGEPLHNCTAVFAAIDILTHRRGLGFSASR 312 Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%) Query: 317 PFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVP 376 FNP+PG Y+ S + + F ++ G +R +G +AACGQL + VP Sbjct: 350 RFNPFPGTLYVPSAPERVDEFRRVLREGGRIVHVRQSKGDSGMAACGQLGDVGGTKEGVP 409 Query: 377 R 377 Sbjct: 410 H 410 Score = 41.4 bits (96), Expect = 0.21, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 4/34 (11%) Query: 10 IGMMREELEEALLKIGIPQRHVRMRTSQIWKWIY 43 G+ EL++ G R Q+W+W+Y Sbjct: 46 KGVTLPELQQWFAAQGERPS----RADQLWRWVY 75 >gi|218662568|ref|ZP_03518498.1| hypothetical protein RetlI_25657 [Rhizobium etli IE4771] Length = 72 Score = 88.4 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 35/61 (57%), Positives = 43/61 (70%) Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEM 380 WPG Y CSD + I F++ I +GY+SPIRTPRG DILAACGQLKS S+R+ K R Sbjct: 1 WPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAACGQLKSESERMRKTERLAF 60 Query: 381 Q 381 + Sbjct: 61 E 61 >gi|226498404|ref|NP_001141738.1| hypothetical protein LOC100273870 [Zea mays] gi|194705752|gb|ACF86960.1| unknown [Zea mays] Length = 105 Score = 88.0 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 43/110 (39%), Positives = 64/110 (58%), Gaps = 7/110 (6%) Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MG+P N DNV K+ +I G FS R++T+STSGFVP + ++ A SL+A Sbjct: 1 MGQPFHNIDNVIKASAIMVHEQG-HFSPRKVTVSTSGFVPQLG-----TQLLAAASLNAR 54 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF-EYVMLKGINDS 295 ++++RN ++ INRK L +L+ R L ++I EY ML G+N S Sbjct: 55 TDEVRNWIMTINRKENLNLLLGTLRGELNLRKKKQIVLSEYAMLSGVNGS 104 >gi|325114723|emb|CBZ50279.1| uvrd-like DNA helicase, C terminal, related [Neospora caninum Liverpool] Length = 139 Score = 86.9 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 57/130 (43%), Gaps = 9/130 (6%) Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK------GIPAKIN 314 +P+E ++D + RI Y+++KG ND+ A L +L+ +N Sbjct: 2 FPMEEVLDLLDERLAKTGR-RIWISYILIKGRNDTDDHARALAALLRARRLPTRHLYHVN 60 Query: 315 LIPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRI 372 +IP+N G E ++ F++ +++ S R G I AACGQ+ + + Sbjct: 61 VIPYNKAQGVEPSMQSPSAAEVNHFTDLLRKLNLSVSRRHTIGSAIDAACGQMHAEYEVG 120 Query: 373 PKVPRQEMQI 382 +++ + Sbjct: 121 QLTKQRQARE 130 >gi|154249178|ref|YP_001410003.1| radical SAM domain-containing protein [Fervidobacterium nodosum Rt17-B1] gi|154153114|gb|ABS60346.1| Radical SAM domain protein [Fervidobacterium nodosum Rt17-B1] Length = 329 Score = 85.3 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 55/267 (20%), Positives = 95/267 (35%), Gaps = 40/267 (14%) Query: 103 IETVY--IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160 +E+V IP + L VS+ GC + C C G R L+ EEIL Q+L + Sbjct: 46 VESVQPPIPRDKKWVLIVSTMDGCPVGCKMCDAG-GYYKRRLSKEEILAQILYLIRSRYE 104 Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLS 220 + I +GEP N D V K L + ++S Sbjct: 105 DEVPVEK------------FKIQFARVGEPALN-DEVLKVLDEL--PQIIDAPGLMPSIS 149 Query: 221 TSGFVPN---IARVGE------EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 T + R+ E L S+H+ R+ ++P+ +K+ + + Sbjct: 150 TVAPIGRNGWFERLIEIKEKHYRGKFQLQFSIHSTDEKQRDEIIPV-KKWSFREISEYGE 208 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP-----GCEY 326 + + R+IT + + K + DA ++ I + P NP G Sbjct: 209 KFVT-TEDRKITLNFALAKE---NIADARVIMNFFNPEKFLIKITPVNPTYRSIENGLNS 264 Query: 327 LCSDQKDI---VTFSECIKRSGYSSPI 350 + + + F + ++ SGY I Sbjct: 265 DVTGEGLVLEHREFVDKLRESGYDVII 291 >gi|226323829|ref|ZP_03799347.1| hypothetical protein COPCOM_01604 [Coprococcus comes ATCC 27758] gi|225208013|gb|EEG90367.1| hypothetical protein COPCOM_01604 [Coprococcus comes ATCC 27758] Length = 85 Score = 84.9 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 4/76 (5%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K+ + EEL+E +L IG R+ QI+ WI+ + + DF+ M+++ + +R Sbjct: 1 MEKKDIASYSFEELQEEMLAIG----EKGFRSRQIYSWIHEKLVDDFEEMTNLPKTLRQK 56 Query: 64 LNQHFSIIYPEIVDEK 79 L + I E+ + Sbjct: 57 LESAYEIRRVEMEKYR 72 >gi|326333648|ref|ZP_08199885.1| radical SAM enzyme, Cfr family [Nocardioidaceae bacterium Broad-1] gi|325948554|gb|EGD40657.1| radical SAM enzyme, Cfr family [Nocardioidaceae bacterium Broad-1] Length = 57 Score = 83.4 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 29/55 (52%) Query: 315 LIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS 369 L P NP PG ++ SD D F ++ G S+ +R RG +I ACGQL + Sbjct: 3 LCPLNPTPGSKWTASDPADEREFVRRLEAKGISTTVRDTRGREIDGACGQLAAAE 57 >gi|222099528|ref|YP_002534096.1| Radical SAM domain protein [Thermotoga neapolitana DSM 4359] gi|221571918|gb|ACM22730.1| Radical SAM domain protein [Thermotoga neapolitana DSM 4359] Length = 311 Score = 83.0 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 56/301 (18%), Positives = 101/301 (33%), Gaps = 57/301 (18%) Query: 95 RCIGGPVEIETVY-----IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVR-NLTAEEIL 148 +E V +P + + L VS+ VGC + C C G R L++EEIL Sbjct: 18 GETSKGNLVEFVESIQPPVPREKKWVLIVSTLVGCPVGCFMCDAG--GFYRGKLSSEEIL 75 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 Q+ DF +P KI MGEP N D V L Sbjct: 76 EQI--------DFLVESRYPDRKVPVEKFKIQ---FARMGEPALN-DAVLDVLEDLPKRY 123 Query: 209 -GLSFSKRRITLSTSGFVPNIARVGE------EIGVMLAISLHAVSNDLRNILVPINRKY 261 T++ G + + L S+H+ + R+ ++P+ +K+ Sbjct: 124 NAFGLLPSISTVAPHGTDSFFEELLKIKEKHYRGRFQLQFSIHSTNERERDRIMPV-KKW 182 Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPW 321 L + + + + + +IT + + + P ++ + + + P NP Sbjct: 183 SLREISEYGKTFVKQGDR-KITLNFAAAQNYSLDP---DVIVDLFDPKKFLVKITPVNPT 238 Query: 322 PGCEYLCSDQKDI--------------VTFSECIKRSGYSSPIRTPRGL----DILAACG 363 S + D+ F ++ +G+ + G I + CG Sbjct: 239 Y-----RSRENDLKSDVDVEKGVLIKHQKFVSKLREAGFEVIL--SIGELEENKIGSNCG 291 Query: 364 Q 364 Q Sbjct: 292 Q 292 >gi|218673229|ref|ZP_03522898.1| hypothetical protein RetlG_17291 [Rhizobium etli GR56] Length = 75 Score = 83.0 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 34/66 (51%), Positives = 42/66 (63%), Gaps = 3/66 (4%) Query: 316 IPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKV 375 IP P Y CS + I F++ I +GY+SPIRTPRG DILAACGQLKS S+R+ K Sbjct: 2 IP---GPAPNYQCSGWEQIEKFADFINSAGYASPIRTPRGRDILAACGQLKSESERMRKT 58 Query: 376 PRQEMQ 381 R + Sbjct: 59 ERLAFE 64 >gi|15642910|ref|NP_227951.1| hypothetical protein TM0136 [Thermotoga maritima MSB8] gi|4980628|gb|AAD35229.1|AE001699_6 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 329 Score = 82.6 bits (203), Expect = 9e-14, Method: Composition-based stats. Identities = 61/277 (22%), Positives = 105/277 (37%), Gaps = 42/277 (15%) Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVR-NLTAEEILLQVLLARSLLGDFPGCEDI 167 P + + L VS+ GC + C C G R L+A+EI Q+ DF Sbjct: 55 PREKKWVLIVSTLAGCPVGCLMCDAG--GFYRGKLSADEIFEQI--------DFLVKSRY 104 Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM---GLSFSKRRI-TLSTSG 223 IPS KI MGEP N + V L GL S + T Sbjct: 105 PNGRIPSEKFKIQ---FARMGEPALN-EAVLDVLKELPARYEAPGLMPSISTVAPCGTDS 160 Query: 224 FVPNIARVGEEI---GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280 F ++ ++ E+ L S+H+ R+ ++P+ +K+ LE + + + + N R Sbjct: 161 FFEDLLKIKEKHYRGKFQLQFSIHSTDEKERDQIIPV-KKWSLEKISEFGKRFV-KENDR 218 Query: 281 RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP---------GCEYLCSDQ 331 +IT + + + + P +I++ + + P NP + + Sbjct: 219 KITLNFAVAQEYSLDP---KVIIRVFDPEKFLVKITPVNPTYRSKENNLNSDVDVERKEL 275 Query: 332 KDIVTFSECIKRSGYSSPIRTPRGL----DILAACGQ 364 F E +K++G+ + G I + CGQ Sbjct: 276 LKHRNFIEELKKAGFEVIL--SIGELEENKIGSNCGQ 310 >gi|168699972|ref|ZP_02732249.1| hypothetical protein GobsU_10628 [Gemmata obscuriglobus UQM 2246] Length = 313 Score = 81.9 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 51/260 (19%), Positives = 99/260 (38%), Gaps = 27/260 (10%) Query: 118 VSSQVGCSLTCSFCYTGTQK--LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175 +SSQ GC+ C C+ +R+ T E L Q + + + Sbjct: 49 LSSQTGCAQACRMCHLTATGQTHLRDTTFNEFLEQAETVLAHYRREGKPARAVHFNLMAR 108 Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI 235 G +++ V+ G D + LS ++G R + +ST R E++ Sbjct: 109 GEPLASKVIATRG------DELLGELSRL--AVGSGLRPRHL-ISTIYPKAFGDRALEDV 159 Query: 236 ----GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291 + S+++VS R +P + +P E+ +D + S + + + G Sbjct: 160 FVVHQPEIHYSIYSVSERFRRRWLP--KAHPAEVALDRLAAWQRHSLKL-VVLHHAYIAG 216 Query: 292 INDSPRDALNLIKIL--KGIPAKINLIPFNPWPGCEYLCSDQKDIVT-----FSECIKRS 344 ND+ D + L + + A IN++ +NP+ + + +V + E + + Sbjct: 217 ENDTEGDVHAICDALEERKLMAHINVVRYNPFDPARHGTEPPEAVVERNAAIYRERLPGA 276 Query: 345 GYSSPIRTPRGLDILAACGQ 364 R G D+ A+CG Sbjct: 277 RVVVIARV--GFDVAASCGM 294 >gi|330983424|gb|EGH81527.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 293 Score = 81.5 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 50/268 (18%), Positives = 101/268 (37%), Gaps = 45/268 (16%) Query: 118 VSSQVGCSLTCSFCYTGTQKLVR--NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175 +SSQ GC +C FC+ T V+ N T E+ L Q L + + Sbjct: 44 LSSQSGCDQSCRFCHLTTTGQVKLDNATLEDFLEQAKLVLAYYDTQAPAD---------- 93 Query: 176 GRKISNIVMMGMGEPLCN----FDN--VKKSLSIASDSMGLSFSKRRITLSTSGFVPN-- 227 + + M GEPL N D+ + +L +D GL S P Sbjct: 94 ---LVHYNFMARGEPLNNPLIRHDSATLLNTLKGLADQRGL-----ETKFLISSIFPKAL 145 Query: 228 ----IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283 + ++ E+ + S++++ + R + + + E ++ + + S Sbjct: 146 GDLTLPQMFPEVHPEIYYSIYSMKPEFRRRWL--AKAHSAEKGLEMLKEWQEFSGKTPK- 202 Query: 284 FEYVMLKGINDSPRDALNLIKILKGIPAKI--NLIPFNPWPGCEYLCSDQKDIVTFSECI 341 + ++G NDS D + + + ++ N++ +NP+ + + +E + Sbjct: 203 IHFAFIEGQNDSEEDMHLIATAINALDLRVSLNIVRYNPYDHRYGKEPAEAVVNRNAELL 262 Query: 342 KRSGYSSPIRTPR-----GLDILAACGQ 364 ++P R G+D+ A+CG Sbjct: 263 SSL-INAP--ATRVVPKVGMDVKASCGM 287 >gi|251791822|ref|YP_003006542.1| protein YfgB [Aggregatibacter aphrophilus NJ8700] gi|247533209|gb|ACS96455.1| protein YfgB [Aggregatibacter aphrophilus NJ8700] Length = 77 Score = 81.1 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 4/61 (6%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64 KK +L+ + R ++ E ++G R Q+ KWIY G +F M+++++++R L Sbjct: 16 KKVNLMNLTRAQMREFFAELG----EKPFRADQLVKWIYHFGEDNFDNMTNLNKKLREKL 71 Query: 65 N 65 Sbjct: 72 K 72 >gi|158320747|ref|YP_001513254.1| radical SAM domain-containing protein [Alkaliphilus oremlandii OhILAs] gi|158140946|gb|ABW19258.1| Radical SAM domain protein [Alkaliphilus oremlandii OhILAs] Length = 455 Score = 80.3 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 60/308 (19%), Positives = 108/308 (35%), Gaps = 43/308 (13%) Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 LL +S + +++ T L + + LC+ Sbjct: 46 ELLKAKYSAEEIKEAVKELDLIKTEGLLFSDDRYFNHDGFK-----NKKPVVKALCLHIA 100 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 C++ C +C+ RSL+ + G + I+ ++ S GR+ Sbjct: 101 HDCNIRCKYCFASQGDFKG-------------VRSLMSEEVGKKAIDFLLENSGGRRNLE 147 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR-------RITLSTSGFVPNIARVG-- 232 + G GEPL NF+ VKK + SK R T++T+G + N + Sbjct: 148 VDFFG-GEPLMNFETVKKIVD-------YGRSKEKEFNKNIRFTMTTNGVLLNDENMAYI 199 Query: 233 --EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 V+L+I ND N+ IN + ++++ L R K Sbjct: 200 NENMHNVVLSIDGRREVND--NMRYAINGQGTYDIIVPKFLKMAELRGHRNYYVRGTFTK 257 Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIK-RSGYSSP 349 D +D L+L + G + ++ P P +Y S++ F + + Y Sbjct: 258 ENLDFAKDVLHLADL--GFKS-TSMEPVVAEPHHDYAISEEDLQTVFDQYEELSKEYVKR 314 Query: 350 IRTPRGLD 357 I+ +G D Sbjct: 315 IKEGKGFD 322 >gi|297847344|ref|XP_002891553.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297337395|gb|EFH67812.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 97 Score = 79.9 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 36/66 (54%) Query: 318 FNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPR 377 +NP G E +K ++ F+ ++ ++ +R RGLD AACGQL++ ++ P + Sbjct: 11 YNPIEGSEQKRPYKKAVLAFAAALESRKITASVRQTRGLDASAACGQLRNKFQKSPLLAE 70 Query: 378 QEMQIT 383 + Q + Sbjct: 71 TDGQES 76 >gi|294954127|ref|XP_002788018.1| hypothetical protein Pmar_PMAR024230 [Perkinsus marinus ATCC 50983] gi|239903222|gb|EER19814.1| hypothetical protein Pmar_PMAR024230 [Perkinsus marinus ATCC 50983] Length = 92 Score = 79.9 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 10/89 (11%) Query: 298 DALNLIKILKGIP------AKINLIPFNPWPGCE--YLCSDQKDIVTFSECIKRSGYSSP 349 A L +++K P INL+P+N + +D F + G ++ Sbjct: 4 HARALAQLIKDRPKQTSYLYHINLLPYNEARDVSTAFKRC--EDWNQFQSILTNEGITTS 61 Query: 350 IRTPRGLDILAACGQLKSLSKRIPKVPRQ 378 R G I AACGQL + + + R+ Sbjct: 62 FRNSFGRSIDAACGQLYATYEAKNALKRK 90 >gi|150019940|ref|YP_001305294.1| radical SAM domain-containing protein [Thermosipho melanesiensis BI429] gi|149792461|gb|ABR29909.1| Radical SAM domain protein [Thermosipho melanesiensis BI429] Length = 312 Score = 79.9 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 60/278 (21%), Positives = 93/278 (33%), Gaps = 42/278 (15%) Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKL-VRNLTAEEILLQVLLARSLLGDFPGCED 166 IP + + L VS+ GC + C C G L ++EI+ Q+L Sbjct: 36 IPREKKWVLIVSTLNGCPVGCLMCDAG--GFYKGKLQSDEIMEQILFL-----------V 82 Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS-MGLSFSKRRITLSTSGFV 225 + V + I MGEP N + V L T++ G Sbjct: 83 ESRFINKRVPVEKFKIQFARMGEPALN-EAVLDVLERLPKEIDAPGLMPSVSTVAPIGTD 141 Query: 226 PNIARVGEEIG------VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279 R+ E L S+HA D RN ++PI +K+ E + + S Sbjct: 142 DFFERLLEIKDKMYLGRFQLQFSIHATDKDQRNRIIPI-KKWSFEDIAKYGEKFV-KSGD 199 Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP---------GCEYLCSD 330 R++T + + K + D +IK I + P NP + Sbjct: 200 RKVTLNFALAKQ---NIADPDVIIKYFDKEKFLIKITPINPTYSAMKNNLESDIDLKTFI 256 Query: 331 QKDIVTFSECIKRSGYSSPIRTPRGL----DILAACGQ 364 + F E + +GY I G I + CGQ Sbjct: 257 PVNHQYFVEKLMEAGYDVII--SIGELEENKIGSNCGQ 292 >gi|148269924|ref|YP_001244384.1| radical SAM domain-containing protein [Thermotoga petrophila RKU-1] gi|170288609|ref|YP_001738847.1| radical SAM domain-containing protein [Thermotoga sp. RQ2] gi|281412195|ref|YP_003346274.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10] gi|147735468|gb|ABQ46808.1| Radical SAM domain protein [Thermotoga petrophila RKU-1] gi|170176112|gb|ACB09164.1| Radical SAM domain protein [Thermotoga sp. RQ2] gi|281373298|gb|ADA66860.1| Radical SAM domain protein [Thermotoga naphthophila RKU-10] Length = 311 Score = 79.5 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 60/281 (21%), Positives = 98/281 (34%), Gaps = 48/281 (17%) Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKL-VRNLTAEEILLQVLLARSLLGDFPGCED 166 IP + + L VS+ GC + C C G L+A+EI Q+ DF Sbjct: 36 IPREKKWVLIVSTLAGCPVGCLMCDAG--GFYKGKLSADEIFEQI--------DFLVKSR 85 Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226 IPS KI MGEP N + V L + ++ST Sbjct: 86 YPNGRIPSEKFKIQ---FARMGEPALN-EAVLDVLKEL--PVRYEAPGLMPSISTVA-PH 138 Query: 227 NIARVGEEI----------GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276 EE+ L S+H+ R+ ++P+ +K+ L+ + + + + Sbjct: 139 GTDSFFEELLKIKEKHYRGKFQLQFSIHSTDEKERDRIIPV-KKWSLDKISEFGKRFV-K 196 Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP---------GCEYL 327 N R+IT + + + + P + + K KI P NP + Sbjct: 197 ENDRKITLNFAVAQEYSLDPEVIIEVFDPEK-FLVKIT--PVNPTYRSKENNLNSDVDVE 253 Query: 328 CSDQKDIVTFSECIKRSGYSSPIRTPRGL----DILAACGQ 364 F E +K +G+ + G I + CGQ Sbjct: 254 RKGLLKHQNFIEELKNAGFEVIL--SIGELEENKIGSNCGQ 292 >gi|266624678|ref|ZP_06117613.1| radical SAM enzyme, Cfr family [Clostridium hathewayi DSM 13479] gi|288863457|gb|EFC95755.1| radical SAM enzyme, Cfr family [Clostridium hathewayi DSM 13479] Length = 62 Score = 77.6 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 30/66 (45%), Gaps = 4/66 (6%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHL 63 ++K + + EEL + G R Q+++W++ + ++ M+++ + ++ Sbjct: 1 MEKTDIKSLNLEELTAFITASG----EKAFRAKQLYEWMHKKLAPGYEEMTNLPKALKER 56 Query: 64 LNQHFS 69 L + Sbjct: 57 LKETCE 62 >gi|194698458|gb|ACF83313.1| unknown [Zea mays] gi|194698542|gb|ACF83355.1| unknown [Zea mays] gi|194707874|gb|ACF88021.1| unknown [Zea mays] gi|195621242|gb|ACG32451.1| hypothetical protein [Zea mays] Length = 89 Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 6/95 (6%) Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 MG+P N DNV K+ +I G FS R++T+STSGFVP + ++ A SL+A Sbjct: 1 MGQPFHNIDNVIKASAIMVHEQG-HFSPRKVTVSTSGFVPQLG-----TQLLAAASLNAR 54 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281 ++++RN ++ INRK L +L+ R L + Sbjct: 55 TDEVRNWIMTINRKENLNLLLGTLRGELNLRKKNK 89 >gi|254167208|ref|ZP_04874061.1| radical SAM domain protein [Aciduliprofundum boonei T469] gi|197624064|gb|EDY36626.1| radical SAM domain protein [Aciduliprofundum boonei T469] Length = 314 Score = 74.5 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 56/285 (19%), Positives = 92/285 (32%), Gaps = 45/285 (15%) Query: 111 KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV-LLARSLLGDFPGCEDIEG 169 + L VSS GC + C C G L +EI+ Q+ + G+ P + Sbjct: 34 GEKWVLIVSSLNGCPVGCKMCDAGFF-YKGKLDYKEIMEQIEYPIKKRFGEKPKTKK--- 89 Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIA 229 I MGEP N V + D +F T++ G Sbjct: 90 ----------FKIQFARMGEPSFN-PAVLDVIENLGDKYD-NFFPSLSTIAPVGVDSFFE 137 Query: 230 RVGE------EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283 R+ + L S+H + R+ ++PI RK+ + + D R + +IT Sbjct: 138 RLLKIKKEKYPEKFQLQFSIHTTNQKQRDEIIPI-RKWDFKRISDYGRKFYD-EGGLKIT 195 Query: 284 FEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK---------DI 334 + + K P + I + P NP + Sbjct: 196 LNFALAKENEADPEIIM---DFFSPEYFLIKITPVNPTVSAKINHISNDINLRNGLPVKH 252 Query: 335 VTFSECIKRSGYSSPIRTPRGLD----ILAACGQ--LKSLSKRIP 373 F + ++R GY I G I + CG L+ + +R Sbjct: 253 RKFVDTLERMGYDVII--SIGDTKENLIGSNCGMFILRFIKERAE 295 >gi|213419786|ref|ZP_03352852.1| hypothetical protein Salmonentericaenterica_19178 [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 64 Score = 74.5 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 328 CSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS-KRIPKVPRQEMQ 381 S I FS+ + G+++ +R RG DI AACGQL R + R+ MQ Sbjct: 1 RSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKRMQ 55 >gi|167763821|ref|ZP_02435948.1| hypothetical protein BACSTE_02201 [Bacteroides stercoris ATCC 43183] gi|298480031|ref|ZP_06998230.1| conserved hypothetical protein [Bacteroides sp. D22] gi|167697937|gb|EDS14516.1| hypothetical protein BACSTE_02201 [Bacteroides stercoris ATCC 43183] gi|298273840|gb|EFI15402.1| conserved hypothetical protein [Bacteroides sp. D22] Length = 336 Score = 71.8 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 42/241 (17%), Positives = 82/241 (34%), Gaps = 39/241 (16%) Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167 +P + + +S+Q GCS+ C FC + RN T ++ +VL A + + + Sbjct: 58 MPLTEKWVITISTQYGCSMGCKFCDVPKVGIGRNATFNDLKGEVLTAIKQHPEVKHTKRL 117 Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL-SFSKRRITLSTSGFVP 226 NI MGEP N + + ++S+ D S +ST Sbjct: 118 -------------NIHYARMGEPTWNANVLLHAISVKKDIEPFIGDSLVHPVISTM-LPK 163 Query: 227 NIARVGEEIG--------------VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 ++ E + L S++ +++ RN L + L + + + Sbjct: 164 RNKKLVEFLHKWCYYIKNELYKGDAGLQFSINTTNDEERNYLFSGS-SLSLGEISEIGKS 222 Query: 273 YPGLSNARRITFEYVM-LKGINDSPRDALNLIKILKGIPAKINLIPF---NPWPGCEYLC 328 P + +Y + +D+ D L ++ + P N + Sbjct: 223 LP-----MPVGRKYALNFALADDTHIDGKRLRELFNPDKFMCKITPLHRTNSCDENDLHT 277 Query: 329 S 329 S Sbjct: 278 S 278 >gi|254167584|ref|ZP_04874435.1| radical SAM domain protein [Aciduliprofundum boonei T469] gi|289596962|ref|YP_003483658.1| Radical SAM domain protein [Aciduliprofundum boonei T469] gi|197623393|gb|EDY35957.1| radical SAM domain protein [Aciduliprofundum boonei T469] gi|289534749|gb|ADD09096.1| Radical SAM domain protein [Aciduliprofundum boonei T469] Length = 318 Score = 71.1 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 64/286 (22%), Positives = 99/286 (34%), Gaps = 47/286 (16%) Query: 111 KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQV-LLARSLLGDFPGCEDIEG 169 + L VSS GC + C C G L +EI+ Q+ + + P + Sbjct: 38 GEKWVLIVSSLNGCPVGCKMCDAGFF-YKGKLDFKEIMEQIEYPIKKRFEEKPKTKK--- 93 Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIA 229 I MGEP N V + D +F T++ G Sbjct: 94 ----------FKIQFARMGEPSFN-PAVLDVIENLGDKYD-NFFPSLSTIAPVGVDSFFE 141 Query: 230 RVGE------EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283 R+ + L S+H + R+ ++PI RK+ + + D R + + +IT Sbjct: 142 RLLKIKKEKYPEKFQLQFSIHTTNTKQRDEIIPI-RKWDFKRISDYGRKFYD-EGSLKIT 199 Query: 284 FEYVMLKGINDSPRDALN-------LIKILKGIP---AKINLIPFNPWPGCEYLCSDQKD 333 + + K P +N LIKI G P AKIN I + Sbjct: 200 LNFALAKENEADPEIIMNFFSPEYFLIKITPGNPTVSAKINHI----SNDIDLRNGLPVK 255 Query: 334 IVTFSECIKRSGYSSPIRTPRGLD----ILAACGQ--LKSLSKRIP 373 F + +KR GY I G I + CG L+ + +R Sbjct: 256 HRKFVDTLKRMGYDVII--SIGDTKENLIGSNCGMFILRFIKERAE 299 >gi|150390110|ref|YP_001320159.1| radical SAM domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149949972|gb|ABR48500.1| Radical SAM domain protein [Alkaliphilus metalliredigens QYMF] Length = 458 Score = 70.7 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 92/242 (38%), Gaps = 31/242 (12%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C++ C +C+ + RS + G + I+ ++ S Sbjct: 93 ALCLHIAHDCNIRCKYCFASQGDFQGD-------------RSFMSLEVGKKAIDFLLENS 139 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASD---SMGLSFSKRRITLSTSGFV---PNI 228 RK + G GEPL NFD VK + + R T++T+G + N+ Sbjct: 140 GNRKNLEVDFFG-GEPLMNFDVVKGLVDYGRSREKDFDKNI---RFTMTTNGVLLNDENM 195 Query: 229 ARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 + E + V+L+I ND ++ IN + ++++ R + + Sbjct: 196 EYINENMHNVVLSIDGRKAVND--HMRYTINGQGTYDVIVPKLRKMVEMRKDKHCYVRGT 253 Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL--CSDQKDIVTFSECIKRSG 345 K D +D L+L + G +++ P P +Y D K++ E + R Sbjct: 254 FTKHNLDFSQDVLHLADL--GFD-NVSVEPVVASPEHDYSIGREDLKEVFENYEILSREY 310 Query: 346 YS 347 + Sbjct: 311 VN 312 >gi|218461239|ref|ZP_03501330.1| hypothetical protein RetlK5_17732 [Rhizobium etli Kim 5] Length = 73 Score = 70.7 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 37/52 (71%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDI 56 +K SLIG+ REE+ AL + G+ + ++MR +Q+W IYVRG+ DF M+++ Sbjct: 22 EKPSLIGLSREEMAAALTEKGVAENQIKMRVAQLWNCIYVRGVSDFDRMTNV 73 >gi|212694596|ref|ZP_03302724.1| hypothetical protein BACDOR_04124 [Bacteroides dorei DSM 17855] gi|212663097|gb|EEB23671.1| hypothetical protein BACDOR_04124 [Bacteroides dorei DSM 17855] Length = 56 Score = 70.3 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 26/50 (52%) Query: 325 EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPK 374 + D + +V F + + + G + IR RG DI AACG L + ++ K Sbjct: 2 DLEGVDMETMVAFRDYLTQHGVFATIRASRGEDIFAACGMLSTAKQQKEK 51 >gi|310829213|ref|YP_003961570.1| radical SAM domain-containing protein [Eubacterium limosum KIST612] gi|308740947|gb|ADO38607.1| radical SAM domain-containing protein [Eubacterium limosum KIST612] Length = 449 Score = 69.9 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 53/259 (20%), Positives = 97/259 (37%), Gaps = 29/259 (11%) Query: 106 VYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCE 165 VY LC+ C+L C++C+ E L L+ G + Sbjct: 82 VYKNHDLVKALCLHVAHDCNLKCNYCFASQGDFN-----GEKL--------LMPLEVGKK 128 Query: 166 DIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225 I+ ++ S R+ + G GEPL NFD VK+ + A K + T++T+G + Sbjct: 129 AIDFIIEQSKDRQNLEVDFFG-GEPLMNFDVVKELVDYARSKEESYHKKFKFTITTNGVL 187 Query: 226 PNIARVG----EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281 + + V+L++ ND N+ +N K +++ID + + ++ Sbjct: 188 LDDENMAYIDENMDNVVLSLDGRKCVND--NMRRTVNDKGSFDIIIDKIKKMAAMREGKK 245 Query: 282 -ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL--CSDQKDIVTFS 338 K D D L + +G + I++ P +Y D I+ Sbjct: 246 DYYVRGTYTKHNLDFGEDVNFLAE--EGFKS-ISVEPVVAEEEHDYAILREDVDQILAEY 302 Query: 339 ECIKRSGYSSPIRTPRGLD 357 + + + R +GLD Sbjct: 303 DKLALDYLN---RHEKGLD 318 >gi|297517024|ref|ZP_06935410.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli OP50] Length = 60 Score = 69.5 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLS-KRIPKVPRQEMQITG 384 I FS+ + G+++ +R RG DI AACGQL R + R+ MQ Sbjct: 2 RIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKRMQGEA 54 >gi|307352680|ref|YP_003893731.1| Radical SAM domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307155913|gb|ADN35293.1| Radical SAM domain protein [Methanoplanus petrolearius DSM 11571] Length = 318 Score = 68.8 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 58/274 (21%), Positives = 83/274 (30%), Gaps = 49/274 (17%) Query: 91 RFPARCIGGPVEIE---TVYIPE--KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAE 145 R I IE +V P + L VSS GC + C C G L+AE Sbjct: 14 RVYIAEIDDGRRIEFVESVQPPFTRSQKWVLIVSSLFGCPVGCRMCDAG-GGYRGKLSAE 72 Query: 146 EILLQV-LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIA 204 +I Q+ L R D I MGEP N V L Sbjct: 73 DIYAQIDYLVRKRFPGGYVDADK------------FKIQFARMGEPAFN-PAVLDVLESL 119 Query: 205 -SDSMGLSFSKRRITLSTSGFVPNIARVGE------EIGVMLAISLHAVSNDLRNILVPI 257 + T++ G R+ E L S+H R L+P+ Sbjct: 120 KTRYKAPGLIPSLSTIAPEGCDEFFKRLLEIKNEHYRERFQLQFSIHTTDMVTREWLIPV 179 Query: 258 NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIP 317 + + E + + + R+IT + + G N D L K + + P Sbjct: 180 -KTWSFEEMKEYGELFFD-KGGRKITLNFAL--GDNMKI-DTGVLRKYFPPDVFLVKITP 234 Query: 318 FNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR 351 NP F +G +S IR Sbjct: 235 VNPT---------------FRA--LENGINSFIR 251 >gi|160879028|ref|YP_001557996.1| radical SAM domain-containing protein [Clostridium phytofermentans ISDg] gi|160427694|gb|ABX41257.1| Radical SAM domain protein [Clostridium phytofermentans ISDg] Length = 489 Score = 67.6 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 42/195 (21%), Positives = 73/195 (37%), Gaps = 20/195 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L C +C+ E + R+L+ G + ++ ++ S Sbjct: 133 ALCLHIAHDCNLACRYCFAEE---------GEYHGR----RALMSYEVGKQALDFLIANS 179 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVG 232 RK + G GEPL NF VK ++ + K R TL+T+G + +I Sbjct: 180 GSRKNLEVDFFG-GEPLMNFQVVKDLVAYGRSQEEIHNKKFRFTLTTNGVLLNDDIIEFA 238 Query: 233 --EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 E V+L+I ND + N K +++I + + N Sbjct: 239 NKEMSNVVLSIDGRREVNDT--MRPFRNGKGSYDLIIPKFKKFADSRNQTNYYVRGTFTH 296 Query: 291 GINDSPRDALNLIKI 305 D D +L ++ Sbjct: 297 NNLDFSEDVKHLAEL 311 >gi|157364718|ref|YP_001471485.1| radical SAM domain-containing protein [Thermotoga lettingae TMO] gi|157315322|gb|ABV34421.1| Radical SAM domain protein [Thermotoga lettingae TMO] Length = 323 Score = 67.6 bits (164), Expect = 4e-09, Method: Composition-based stats. Identities = 60/283 (21%), Positives = 97/283 (34%), Gaps = 43/283 (15%) Query: 103 IETVYIPE--KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160 +++V P + L +S+ GC + C C G LTAEE+L Q+ Sbjct: 29 VQSVQPPFSRNEKWVLIISTLKGCPVGCLMCDAG-GYYEGKLTAEEMLEQI--------- 78 Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLS 220 E V K I MGEP N NV L SD + T++ Sbjct: 79 --DFLIKEYFPDGLVKVKKFKIQFARMGEPALN-KNVLTVLEKVSDHE--NLIPSISTVA 133 Query: 221 TSGFVPNIARVGEEIG------VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274 G R+ L S+H+ + R+ ++P+ RK+ + + + Sbjct: 134 PYGCEEFFDRLLSIKQRHYQGRFQLQFSIHSTDENQRDEIIPV-RKWSFKDIALYGEKFV 192 Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP-------GCEYL 327 +N R+I + + + S A + I + P NP + Sbjct: 193 -KNNDRKIALNFALSNKVTVS---AEKIANTFSPDKFLIKITPVNPTYNAVNNQIESDID 248 Query: 328 CSD--QKDIVTFSECIKRSGYSSPIRTPRGL----DILAACGQ 364 S F E +K+SG+ + G I + CGQ Sbjct: 249 LSTGFPVRHRVFMEELKKSGFEIIL--SIGEPEENKIGSNCGQ 289 >gi|224419301|ref|ZP_03657307.1| hypothetical protein HcanM9_08523 [Helicobacter canadensis MIT 98-5491] gi|313142800|ref|ZP_07804993.1| predicted protein [Helicobacter canadensis MIT 98-5491] gi|313131831|gb|EFR49448.1| predicted protein [Helicobacter canadensis MIT 98-5491] Length = 52 Score = 67.2 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 6/58 (10%) Query: 4 LKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVR 61 + K+++ G L ++L + R QI+ W+YV DF+ M ++ + +R Sbjct: 1 MDKQNVFGFTLNSLSDSLKDF------PKFRAKQIYHWLYVHYENDFEKMENLPKNLR 52 >gi|219558901|ref|ZP_03537977.1| hypothetical protein MtubT1_16982 [Mycobacterium tuberculosis T17] Length = 114 Score = 67.2 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 36/105 (34%), Gaps = 10/105 (9%) Query: 7 ESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN- 65 L + A+ ++G+P R Q+ Y R I D + M+D+ VR + Sbjct: 17 RHLADLDAAGRASAVAELGLPA----FRAKQLAHQYYGRLIADPRQMTDLPAAVRDRIAG 72 Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE 110 F + D TRK L R E+V + Sbjct: 73 AMFPNLLTASADITCDAGQTRKTLWR-----AVDGTMFESVLMRY 112 >gi|325661432|ref|ZP_08150058.1| hypothetical protein HMPREF0490_00792 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472381|gb|EGC75593.1| hypothetical protein HMPREF0490_00792 [Lachnospiraceae bacterium 4_1_37FAA] Length = 319 Score = 66.5 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 46/291 (15%), Positives = 80/291 (27%), Gaps = 53/291 (18%) Query: 86 RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAE 145 K + I G V E + +S+Q GC + C FC N++ + Sbjct: 33 IKADFLGLHKEINGVVNTEVDLTK---KWVATISTQKGCPMKCRFCDCPKYGFYGNVSLD 89 Query: 146 EILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS 205 E+ ++ N+ MGEP N +NV Sbjct: 90 ELCYEIETILEHEDVNITER--------------FNVHFARMGEPTFN-NNVLYFTEYML 134 Query: 206 DSMGLSFSKRRITLSTSGFV---------PNIARV----------GEEIGVMLAISLHAV 246 K I + T V N+ L S+++ Sbjct: 135 QR----IVKSYIDVKTIHPVISTMLPKSNKNLKEFILKWCNIKNNTYNGDAGLQFSINST 190 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 ND RN N LE + + P + T + + K D+ D L + Sbjct: 191 DNDQRNEQF-NNMSLELEEISKIAKELPAPKGR-KYTLNFAVTK---DTIIDVKRLSDLF 245 Query: 307 KGIPAKINLIPF---NPWPGCEYLCSDQ----KDIVTFSECIKRSGYSSPI 350 + + P N + + F + ++G+ + Sbjct: 246 DKEKFIVKITPIHETNSAIDNGFDVTTSYTDYDVYREFERPLVKAGWDVIV 296 >gi|238923391|ref|YP_002936907.1| arylsulfatase regulator (Fe-S oxidoreductase) [Eubacterium rectale ATCC 33656] gi|238875066|gb|ACR74773.1| arylsulfatase regulator (Fe-S oxidoreductase) [Eubacterium rectale ATCC 33656] Length = 456 Score = 65.7 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 54/281 (19%), Positives = 101/281 (35%), Gaps = 35/281 (12%) Query: 54 SDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSR 113 + ++E+ L + E ++++ L+ E I K R Sbjct: 37 DNSAKEIIEKLVDRYPQTEIEEAIQEVNE-------LKDNEELFTEDTYKER-IIDFKKR 88 Query: 114 GT----LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169 T LC+ C+L C +C+ E + R+L+ G + ++ Sbjct: 89 QTVVKALCLHIAHDCNLACRYCFAEE---------GEYHGR----RALMSYETGKQALDF 135 Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PN 227 ++ S R+ + G GEPL N+D VK+ ++ + L R TL+T+G + Sbjct: 136 LIANSGSRRNLEVDFFG-GEPLMNWDVVKQLVAYGREQEKLHDKHFRFTLTTNGVLLNDE 194 Query: 228 IARVG--EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFE 285 I E V+L+I +D Y L ++ + + + + Sbjct: 195 IMEFANKEMDNVVLSIDGRKEVHDRMRPFRKGAGSYDL--IVPKFQKFAESRHQDKYYVR 252 Query: 286 YVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 D +D L+L + G +I++ P P EY Sbjct: 253 GTYTHFNTDFSKDVLHLADL--GFK-QISVEPVVAQPTDEY 290 >gi|326204482|ref|ZP_08194339.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782] gi|325985275|gb|EGD46114.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782] Length = 447 Score = 65.3 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 54/272 (19%), Positives = 98/272 (36%), Gaps = 34/272 (12%) Query: 62 HLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ 121 LL++ +S E E+I+ ++ L + E + LC+ Sbjct: 45 ELLSEKYSGQVIEDAFEEIAELESKGLLFS-EDVYSDALNKWE----RKPVVKALCLHIC 99 Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 C+L C +C+ T + R+++ G + I+ ++ S GR+ Sbjct: 100 HDCNLRCKYCFASTGSFGGH-------------RTMMDLETGRKAIDFLIEKSAGRRNLE 146 Query: 182 IVMMGMGEPLCNFDNVKKSL---SIASDSMGLSFSKRRITLSTSGFV--PNIARV--GEE 234 + G GEPL NFD VK + I G +F R T++T+ + I Sbjct: 147 VDFFG-GEPLMNFDVVKGIVEYARIREKESGKNF---RFTITTNAVLLNDEIKDFINKNM 202 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 V+L+I +ND N+ ++ E ++ + N + D Sbjct: 203 HNVVLSIDGRKETND--NMRPRVDGSGTYERILPKIQDMAESRNQDNYYVRGTFTRENLD 260 Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 D L+L +G +I++ P Y Sbjct: 261 FSEDVLHLAD--QGFK-QISIEPVVAAKDSGY 289 >gi|317470624|ref|ZP_07930010.1| radical SAM superfamily protein [Anaerostipes sp. 3_2_56FAA] gi|316901915|gb|EFV23843.1| radical SAM superfamily protein [Anaerostipes sp. 3_2_56FAA] Length = 453 Score = 64.5 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 94/246 (38%), Gaps = 29/246 (11%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L C +C+ + + RS++ G + ++ +V S Sbjct: 93 ALCLHIAHDCNLACRYCFAEEGEYHGD-------------RSMMSFEVGKQALDFLVENS 139 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVG 232 R+ + G GEPL NF+ VK+ ++ K R TL+T+G + + Sbjct: 140 GSRRNLEVDFFG-GEPLMNFEVVKQLVAYGRSLEEKHSKKFRFTLTTNGVLLDDEVMEFA 198 Query: 233 --EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 E V+L+I +D + N K +++ID + + + N + Sbjct: 199 NREMANVVLSIDGRREVHDK--MRPTRNGKGSYDLIIDKFKKFAEMRNGKSYYVRGTFTH 256 Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY--LCSDQKDIVTFSECIKRSGYSS 348 D +D L+L +G +I++ P Y +D I+ + + + Sbjct: 257 DNLDFSKDVLHLAD--EGFD-QISVEPVVGPEEERYTIKEADLPKIMEEYDLLAKE---- 309 Query: 349 PIRTPR 354 IR + Sbjct: 310 IIRREK 315 >gi|239618428|ref|YP_002941750.1| Fe-S-cluster redox enzyme-like protein [Kosmotoga olearia TBF 19.5.1] gi|239507259|gb|ACR80746.1| Fe-S-cluster redox enzyme-like protein [Kosmotoga olearia TBF 19.5.1] Length = 324 Score = 64.5 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 56/257 (21%), Positives = 87/257 (33%), Gaps = 40/257 (15%) Query: 86 RKWLLRFPARCIGGPVEIETVY-----IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV- 139 +K L E+E V + + + +S+ VGC + CS C G Sbjct: 9 KKELALVFVGRTSMGNEVEFVESIQPPLSRNEKEVIIISTLVGCPVGCSMCDAG--GFYG 66 Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199 LTA+E+L Q+ + V K I MGEP N D V Sbjct: 67 GKLTAKEMLEQIEYVVNFR-----------FGGRKVPSKKFKIQFARMGEPAFN-DAVID 114 Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPN-----------IARVGEEIGVMLAISLHAVSN 248 L + F + S S P I L S+H+ Sbjct: 115 VLDRLPEE----FEAPGLLPSVSTIAPKGREAFFERLYWIKERHYGGRFQLQFSIHSTDL 170 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG 308 RN ++P+ K+ LE + + + + R+IT + + K D+ D +IK Sbjct: 171 RQRNEIIPV-PKWHLEKIAEYGKEFV-KEGDRKITLNFALSK---DNIVDPGIIIKHFDP 225 Query: 309 IPAKINLIPFNPWPGCE 325 I + P NP + Sbjct: 226 EKFLIKITPVNPTYSAK 242 >gi|167746208|ref|ZP_02418335.1| hypothetical protein ANACAC_00913 [Anaerostipes caccae DSM 14662] gi|167654201|gb|EDR98330.1| hypothetical protein ANACAC_00913 [Anaerostipes caccae DSM 14662] Length = 442 Score = 64.1 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 94/246 (38%), Gaps = 29/246 (11%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L C +C+ + + RS++ G + ++ +V S Sbjct: 82 ALCLHIAHDCNLACRYCFAEEGEYHGD-------------RSMMSFEVGKQALDFLVENS 128 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVG 232 R+ + G GEPL NF+ VK+ ++ K R TL+T+G + + Sbjct: 129 GSRRNLEVDFFG-GEPLMNFEVVKQLVAYGRSLEEKHSKKFRFTLTTNGVLLDDEVMEFA 187 Query: 233 --EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 E V+L+I +D + N K +++ID + + + N + Sbjct: 188 NREMANVVLSIDGRKEVHDK--MRPTRNGKGSYDLIIDKFKKFAEMRNGKSYYVRGTFTH 245 Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY--LCSDQKDIVTFSECIKRSGYSS 348 D +D L+L +G +I++ P Y +D I+ + + + Sbjct: 246 DNLDFSKDVLHLAD--EGFD-QISVEPVVGPEEERYTIKEADLPKIMEEYDLLAKE---- 298 Query: 349 PIRTPR 354 IR + Sbjct: 299 IIRREK 304 >gi|313888447|ref|ZP_07822114.1| six-Cys-in-45 modification radical SAM protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845476|gb|EFR32870.1| six-Cys-in-45 modification radical SAM protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 450 Score = 64.1 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 41/208 (19%), Positives = 72/208 (34%), Gaps = 27/208 (12%) Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168 P+ LC+ C+L C +C+ + RSL+ G + ++ Sbjct: 89 PQNVVKALCLHVAHDCNLRCKYCFASQGDFKGD-------------RSLMTFETGKKALD 135 Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--P 226 ++ S R+ + G GEPL NFD VKK ++ + R T++T+G + Sbjct: 136 FLLQNSGNRRNLEVDFFG-GEPLMNFDLVKKLVAYGREEEKKYDKHFRFTITTNGVLLND 194 Query: 227 NIARVGEEI--GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF 284 I E V+L+I ND + N K ++++ + + Sbjct: 195 EIEEFINENMDNVVLSIDGRKEIND--EMRPTTNGKGSYDIIVPKFKELIDKRGDKDYFI 252 Query: 285 EYVMLKGINDSPRDALNLIKILKGIPAK 312 D D LK + Sbjct: 253 RGTFTNENLDFSED-------LKDFYSH 273 >gi|255994316|ref|ZP_05427451.1| arylsulfatase regulator [Eubacterium saphenum ATCC 49989] gi|255993029|gb|EEU03118.1| arylsulfatase regulator [Eubacterium saphenum ATCC 49989] Length = 520 Score = 63.4 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 58/332 (17%), Positives = 108/332 (32%), Gaps = 45/332 (13%) Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74 EL + R IY D + + ++ Q F + E Sbjct: 54 AELSKISADEAFAALEHAYR-------IYTEKKDDVLSAGNSALNLKSENRQLFDYLTAE 106 Query: 75 ---IVDEKISCDGT-RKW------LLRFPARCIGGPVEIETVY--------IPEKSRGTL 116 I S G+ K LL + + E VY + + + Sbjct: 107 AGVIDGVLNSGCGSDVKLSDVIEVLLDIRELTLCDELFTEDVYEGIAAGLKKSQSTLKAI 166 Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176 C+ GC++ C +C+ G + + ++L+ D I+ ++ S Sbjct: 167 CLHVAHGCNMRCGYCFAGDGEYNGS-------------KALMDDATAKAAIDFLIRESKN 213 Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEE 234 R+ + G GEPL NFD +K ++ A + R TL+T+G + + E Sbjct: 214 RRNLEVDFFG-GEPLLNFDVIKNTVKYARSIEKSANKNFRFTLTTNGILIDDEVIEFSNE 272 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 + +SL + + + E++ D + + D Sbjct: 273 QMSNVVMSLDG-RKEKHDRMRKHAGLGSYELIKDKFIKFAKARKQKDYYIRGTYTGYNTD 331 Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 +D L++ + G +I+L P EY Sbjct: 332 FSKDVLHIADL--GFD-EISLEPVVACDEAEY 360 >gi|225548076|ref|ZP_03769361.1| hypothetical protein RUMHYD_00055 [Blautia hydrogenotrophica DSM 10507] gi|225040752|gb|EEG50998.1| hypothetical protein RUMHYD_00055 [Blautia hydrogenotrophica DSM 10507] Length = 454 Score = 63.0 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 38/195 (19%), Positives = 69/195 (35%), Gaps = 20/195 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L C +C+ E R L+ G + ++ ++ S Sbjct: 97 ALCLHIAHDCNLACRYCFAEE---------GEYHGH----RELMSYEVGKQALDFLIANS 143 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARV- 231 R+ + G GEPL N+ VK+ + + L R TL+T+G I Sbjct: 144 GSRRNLEVDFFG-GEPLMNWKVVKELVRYGREQEKLHDKNFRFTLTTNGVALNDEIMEFC 202 Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 E V+L++ +D Y L ++ + + N + + Sbjct: 203 NREMGNVVLSVDGRKEVHDFMRPFPKGAGSYDL--ILPKFQKFAESRNQDKYYVRGTFTR 260 Query: 291 GINDSPRDALNLIKI 305 D +D L+L + Sbjct: 261 HNLDFSKDVLHLADL 275 >gi|240144502|ref|ZP_04743103.1| radical SAM domain protein [Roseburia intestinalis L1-82] gi|257203489|gb|EEV01774.1| radical SAM domain protein [Roseburia intestinalis L1-82] Length = 457 Score = 63.0 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 52/263 (19%), Positives = 94/263 (35%), Gaps = 30/263 (11%) Query: 104 ETVYIPEKSRGT----LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLG 159 E + K R T LC+ C+L C +C+ E + R+L+ Sbjct: 84 ENYIMDFKKRPTVVKALCLHIAHDCNLACQYCFAEE---------GEYHGR----RALMS 130 Query: 160 DFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITL 219 G + ++ ++ S R+ + G GEPL N+ VK ++ + L R TL Sbjct: 131 FEVGKKALDFLIANSGNRRNLEVDFFG-GEPLMNWQVVKDLVAYGREQEKLHDKNFRFTL 189 Query: 220 STSGFV--PNIARV--GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275 +T+G + I E V+L+I +D Y L ++ + + Sbjct: 190 TTNGVLLNDEIMEFCNKEMANVVLSIDGRKEVHDKMRPFRKGAGSYDL--IVPKFQKFAE 247 Query: 276 LSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIV 335 + + D D L+L + G +I++ P P Y +++ Sbjct: 248 SRHQDKYYVRGTFTHYNPDFAADVLHLADL--GFK-QISVEPVVAEPSEPYAITEEDLPQ 304 Query: 336 TFSECIKRSGYSSPIRTPR-GLD 357 F E + +R + G D Sbjct: 305 LFEEY--DKLAAEMVRRHKEGDD 325 >gi|207111233|ref|ZP_03245395.1| hypothetical protein HpylH_19398 [Helicobacter pylori HPKX_438_CA4C1] Length = 54 Score = 63.0 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 28/49 (57%) Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFS 338 + +NDS A L+K+L GI +K+NLI FNP G ++ + F+ Sbjct: 1 RDLNDSLDCAKKLLKLLNGIKSKVNLILFNPHEGSKFERPSLESARMFA 49 >gi|225568642|ref|ZP_03777667.1| hypothetical protein CLOHYLEM_04720 [Clostridium hylemonae DSM 15053] gi|225162570|gb|EEG75189.1| hypothetical protein CLOHYLEM_04720 [Clostridium hylemonae DSM 15053] Length = 468 Score = 62.6 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 74/207 (35%), Gaps = 20/207 (9%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 IE V + LC+ C+L C +C+ E + R+L+ Sbjct: 95 IEEVKKRKTVVKALCLHIAHDCNLACRYCFAEE---------GEYHGR----RALMSYEV 141 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 G + ++ ++ S R + G GEPL N+ VK ++ + R T++T+ Sbjct: 142 GKKALDFLIANSGSRHNLEVDFFG-GEPLMNWQVVKDLVAYGRSQEKIHDKHFRFTVTTN 200 Query: 223 GFV--PNIARV--GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN 278 G + I E V+L++ ND + N K E+++ + N Sbjct: 201 GVLLNDEIQEFVNREMDNVVLSLDGRKEIND--RMRPFRNGKGSYELIVPKFQKLAESRN 258 Query: 279 ARRITFEYVMLKGINDSPRDALNLIKI 305 + + D D L+ + Sbjct: 259 QEKYYIRGTFTRNNLDFAEDILHFADL 285 >gi|125973423|ref|YP_001037333.1| radical SAM family protein [Clostridium thermocellum ATCC 27405] gi|256004402|ref|ZP_05429383.1| Radical SAM domain protein [Clostridium thermocellum DSM 2360] gi|125713648|gb|ABN52140.1| Radical SAM [Clostridium thermocellum ATCC 27405] gi|255991686|gb|EEU01787.1| Radical SAM domain protein [Clostridium thermocellum DSM 2360] gi|316940341|gb|ADU74375.1| Radical SAM domain protein [Clostridium thermocellum DSM 1313] Length = 450 Score = 62.6 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 45/196 (22%), Positives = 75/196 (38%), Gaps = 24/196 (12%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKL--VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172 LC+ C+L C +C+ T RN+ + E+ G + I+ ++ Sbjct: 95 ALCLHISHDCNLRCKYCFASTGNFGGQRNMMSLEV---------------GKKAIDFLIS 139 Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIA 229 S RK I G GEP+ NFD VK + A R TL+T+G + NI Sbjct: 140 ESGNRKNLEIDFFG-GEPMMNFDVVKGIIEYARQKEKEHNKNFRFTLTTNGLLLNDENIK 198 Query: 230 RVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVM 288 + E + ++L+I ND I + + Y + ++ ++ N Sbjct: 199 YINENMQNIVLSIDGRKEVNDRMRIRIDGSGCY--DDILPKFKYVAESRNQDNYYVRGTF 256 Query: 289 LKGINDSPRDALNLIK 304 + D D L+L Sbjct: 257 TRENMDFSNDVLHLAD 272 >gi|281417626|ref|ZP_06248646.1| Radical SAM domain protein [Clostridium thermocellum JW20] gi|281409028|gb|EFB39286.1| Radical SAM domain protein [Clostridium thermocellum JW20] Length = 450 Score = 62.6 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 45/196 (22%), Positives = 75/196 (38%), Gaps = 24/196 (12%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKL--VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172 LC+ C+L C +C+ T RN+ + E+ G + I+ ++ Sbjct: 95 ALCLHISHDCNLRCKYCFASTGNFGGQRNMMSLEV---------------GKKAIDFLIS 139 Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIA 229 S RK I G GEP+ NFD VK + A R TL+T+G + NI Sbjct: 140 ESGNRKNLEIDFFG-GEPMMNFDVVKGIIEYARQKEKEHNKNFRFTLTTNGLLLNDENIK 198 Query: 230 RVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVM 288 + E + ++L+I ND I + + Y + ++ ++ N Sbjct: 199 YINENMQNIVLSIDGRKEVNDRMRIRIDGSGCY--DDILPKFKYVAESRNQDNYYVRGTF 256 Query: 289 LKGINDSPRDALNLIK 304 + D D L+L Sbjct: 257 TRENMDFSNDVLHLAD 272 >gi|167768547|ref|ZP_02440600.1| hypothetical protein CLOSS21_03106 [Clostridium sp. SS2/1] gi|167710071|gb|EDS20650.1| hypothetical protein CLOSS21_03106 [Clostridium sp. SS2/1] Length = 49 Score = 62.6 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 4/52 (7%) Query: 8 SLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQE 59 L M +E++E + IG + R QI++W + M+++ + Sbjct: 2 DLKSMTLQEMQEYMESIG----EKKFRAKQIYEWFHKHLALSLDEMNNVPKN 49 >gi|291560706|emb|CBL39506.1| Arylsulfatase regulator (Fe-S oxidoreductase) [butyrate-producing bacterium SSC/2] Length = 458 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 42/194 (21%), Positives = 76/194 (39%), Gaps = 20/194 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L C +C+ E + R+L+ G + ++ +V S Sbjct: 93 ALCLHIAHDCNLACRYCFAEE---------GEYKGR----RALMSAEVGKKALDFLVENS 139 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVG 232 R+ + G GEPL NFD VK+ ++ K R TL+T+G + +I Sbjct: 140 GNRRNLEVDFFG-GEPLMNFDVVKEIVAYGRSLEETHDKKFRFTLTTNGVLLNDDIMEFA 198 Query: 233 --EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 E V+L++ +D + N K + +ID + + N ++ Sbjct: 199 NKEMDNVVLSVDGRKEVHDY--MRPFRNGKGSYDFVIDKFKKFADSRNQQKYYVRGTFTH 256 Query: 291 GINDSPRDALNLIK 304 D +D ++L Sbjct: 257 HNLDFSKDVMHLAD 270 >gi|317499049|ref|ZP_07957330.1| radical SAM superfamily protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316893699|gb|EFV15900.1| radical SAM superfamily protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 458 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 42/194 (21%), Positives = 76/194 (39%), Gaps = 20/194 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L C +C+ E + R+L+ G + ++ +V S Sbjct: 93 ALCLHIAHDCNLACRYCFAEE---------GEYKGR----RALMSAEVGKKALDFLVENS 139 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVG 232 R+ + G GEPL NFD VK+ ++ K R TL+T+G + +I Sbjct: 140 GNRRNLEVDFFG-GEPLMNFDVVKEIVAYGRSLEETHDKKFRFTLTTNGVLLNDDIMEFA 198 Query: 233 --EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 E V+L++ +D + N K + +ID + + N ++ Sbjct: 199 NKEMDNVVLSVDGRKEVHDY--MRPFRNGKGSYDFVIDKFKKFADSRNQQKYYVRGTFTH 256 Query: 291 GINDSPRDALNLIK 304 D +D ++L Sbjct: 257 HNLDFSKDVMHLAD 270 >gi|167766768|ref|ZP_02438821.1| hypothetical protein CLOSS21_01276 [Clostridium sp. SS2/1] gi|167711522|gb|EDS22101.1| hypothetical protein CLOSS21_01276 [Clostridium sp. SS2/1] Length = 458 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 42/194 (21%), Positives = 76/194 (39%), Gaps = 20/194 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L C +C+ E + R+L+ G + ++ +V S Sbjct: 93 ALCLHIAHDCNLACRYCFAEE---------GEYKGR----RALMSAEVGKKALDFLVENS 139 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVG 232 R+ + G GEPL NFD VK+ ++ K R TL+T+G + +I Sbjct: 140 GNRRNLEVDFFG-GEPLMNFDVVKEIVAYGRSLEETHDKKFRFTLTTNGVLLNDDIMEFA 198 Query: 233 --EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 E V+L++ +D + N K + +ID + + N ++ Sbjct: 199 NKEMDNVVLSVDGRKEVHDY--MRPFRNGKGSYDFIIDKFKKFADSRNQQKYYVRGTFTH 256 Query: 291 GINDSPRDALNLIK 304 D +D ++L Sbjct: 257 HNLDFSKDVMHLAD 270 >gi|226323925|ref|ZP_03799443.1| hypothetical protein COPCOM_01702 [Coprococcus comes ATCC 27758] gi|225207474|gb|EEG89828.1| hypothetical protein COPCOM_01702 [Coprococcus comes ATCC 27758] Length = 465 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 37/204 (18%), Positives = 74/204 (36%), Gaps = 20/204 (9%) Query: 106 VYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCE 165 V + LC+ C+L C +C+ E + R+L+ G + Sbjct: 98 VIKRKTVVKALCLHIAHDCNLACKYCFAEE---------GEYHGR----RALMTYEVGKK 144 Query: 166 DIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225 ++ ++ S R+ + G GEPL N+ VK ++ + L R T++T+G + Sbjct: 145 ALDFLIANSGTRRNLEVDFFG-GEPLMNWQVVKDLVAYGREQEKLHDKHFRFTVTTNGVL 203 Query: 226 --PNIARV--GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281 I E V++++ ND + N K ++++ + N R Sbjct: 204 LNDEIQEFINKEMDNVVISLDGRKEVND--RMRPFRNGKGSYDLIVPKFQKLADSRNQER 261 Query: 282 ITFEYVMLKGINDSPRDALNLIKI 305 + D D + ++ Sbjct: 262 YYIRGTFTRNNLDFSEDVKHFAEL 285 >gi|317132372|ref|YP_004091686.1| Radical SAM domain protein [Ethanoligenens harbinense YUAN-3] gi|315470351|gb|ADU26955.1| Radical SAM domain protein [Ethanoligenens harbinense YUAN-3] Length = 452 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 91/265 (34%), Gaps = 39/265 (14%) Query: 51 QGMSDI-SQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP 109 + M+ + Q+ L + + E+ L G + VY Sbjct: 37 EDMTRVLPQKAGERLAARYGVNALREAWEE---------LFALKE---DGRLFSPDVYAA 84 Query: 110 EKSRG------TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163 ++ G ++C++ C+L CS+C+ T R L+ G Sbjct: 85 YRNAGDMAPVKSMCLNVAHDCNLRCSYCFASTGDFGG-------------GRKLMPFSVG 131 Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223 + ++ ++ + R+ + G GEP+ NFD VK+ ++ ++ + R T +T+ Sbjct: 132 KQAVDFLLEHAGNRRNLELDFFG-GEPMMNFDVVKEVVAYGREAEQKAGKHIRFTTTTNA 190 Query: 224 FVPNIARV----GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279 V + ++ E V+L+I +D + + Y + ++ + Sbjct: 191 LVLDDEKIDFINREMYNVVLSIDGRQSVHDRMRRRIDGSGSY--QTILANIKRLVERREH 248 Query: 280 RRITFEYVMLKGINDSPRDALNLIK 304 R D D L L Sbjct: 249 RNYYVRGTFTHENLDFAEDVLALAD 273 >gi|255505152|ref|ZP_05344771.3| radical SAM domain protein [Bryantella formatexigens DSM 14469] gi|255269307|gb|EET62512.1| radical SAM domain protein [Bryantella formatexigens DSM 14469] Length = 463 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 42/207 (20%), Positives = 77/207 (37%), Gaps = 24/207 (11%) Query: 107 YIPEKSRGT----LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 I K R T LC+ C+L C +C+ E + R+L+ Sbjct: 94 IIDFKKRKTVVKALCLHIAHDCNLACRYCFAEE---------GEYHGR----RALMSYEV 140 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 G + ++ ++ S R+ + G GEPL N+ VK + + L K R TL+T+ Sbjct: 141 GKKALDFLIANSGSRRNLEVDFFG-GEPLMNWQVVKDLVKYGREQEALHDKKFRFTLTTN 199 Query: 223 GFVPNIARV----GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN 278 G + N + E V+L+I +D + K ++++ + + Sbjct: 200 GVLLNDEVMEFCNREMANVVLSIDGRKEVHDT--MRPFRGGKGSYDLVLPKFQKFAESRG 257 Query: 279 ARRITFEYVMLKGINDSPRDALNLIKI 305 + + D D L+L + Sbjct: 258 QEKYYVRGTFTRNNLDFAEDVLHLADL 284 >gi|312792813|ref|YP_004025736.1| Radical SAM domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179953|gb|ADQ40123.1| Radical SAM domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 453 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 43/240 (17%), Positives = 81/240 (33%), Gaps = 25/240 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 +C+ C L C +C+ + R L+ G + I+ ++ S Sbjct: 92 AMCLHVAHDCDLRCRYCFASSGSFK-------------QERKLMSFDVGKKTIDFLLQNS 138 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS---MGLSFSKRRITLSTSGFVPNIARV 231 R+ + G GEPL NFD VKK + A S T +T+ I + Sbjct: 139 GSRQNLEVDFFG-GEPLLNFDVVKKIVEYARQEEKKYNKKISFTLTTNATNLSDDIIEYL 197 Query: 232 GEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 + + V+L+ ND + + N + D + N + Sbjct: 198 NQNMENVVLSHDGRPQVNDF--MRIDRNGNGTYSKITDNILRFIQKRNGKTYYVRGTFTA 255 Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY--LCSDQKDIVTFSECIKRSGYSS 348 D +D ++L + GI +I++ P + S + I + + ++ Sbjct: 256 KNLDFSKDVMHLYSL--GIK-EISIEPVVLDKSSPWAIRESHIERIKEEYDILAEEFINA 312 >gi|257066316|ref|YP_003152572.1| Fe-S-cluster redox enzyme-like protein [Anaerococcus prevotii DSM 20548] gi|256798196|gb|ACV28851.1| Fe-S-cluster redox enzyme-like protein [Anaerococcus prevotii DSM 20548] Length = 322 Score = 61.4 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 48/268 (17%), Positives = 91/268 (33%), Gaps = 39/268 (14%) Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160 +E + + + + VSSQ GC + C+FC N + E++ ++ +L G Sbjct: 46 ERVENIEVDLNDKLVVTVSSQKGCPMNCNFCDCPKLGFHGNSSVAELISEISTGIALSGV 105 Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLS 220 G N+ MGEP NF NV +S I + F + +S Sbjct: 106 KDGQR--------------LNVHYARMGEPTFNF-NVIESAKIVGEFANKHFKEYHPVVS 150 Query: 221 TSGFVPNIARV--------------GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEML 266 T + R+ G+ L S++ + + RN N+ L+ + Sbjct: 151 TM-LPKDNKRLEKFLLEWTSLMKSNNWNGGLGLQFSINTLYEEDRNKAF-DNKSLSLQQI 208 Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP---G 323 D + P + T + + S D + K + + P + Sbjct: 209 SDLAKKLPNPVGR-KYTLNFAVTSE---SDLDVNKMNKYFDKEKFVVKITPIHETKRAIE 264 Query: 324 CEYLCSDQKDI-VTFSECIKRSGYSSPI 350 +Y + D+ F + + G+ + Sbjct: 265 NKYEIVKEFDVYEKFEKPLVEDGWDVIV 292 >gi|220927987|ref|YP_002504896.1| radical SAM protein [Clostridium cellulolyticum H10] gi|219998315|gb|ACL74916.1| Radical SAM domain protein [Clostridium cellulolyticum H10] Length = 447 Score = 61.4 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 46/219 (21%), Positives = 77/219 (35%), Gaps = 29/219 (13%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L C +C+ T + R+++ G + I+ ++ S Sbjct: 93 ALCLHICHDCNLRCKYCFASTGSFGGH-------------RTMMDLETGKKAIDFLIEKS 139 Query: 175 VGRKISNIVMMGMGEPLCNFDNV---KKSLSIASDSMGLSFSKRRITLSTSGFV--PNIA 229 GR+ + G GEPL NFD V K I G +F R T++T+ + I Sbjct: 140 AGRRNLEVDFFG-GEPLMNFDVVKGIVKYARIREKEAGKNF---RFTITTNAVLLNEEIK 195 Query: 230 RV--GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 V+L+I +ND V + Y ++ N Sbjct: 196 DFINANMHNVVLSIDGRKETNDRMRPRVDGSGTYT--KILPKILDMAESRNQDNYYVRGT 253 Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 + D D L+L +G +I++ P Y Sbjct: 254 FTRENLDFSNDVLHLAD--QGFK-QISIEPVVAAKDSGY 289 >gi|229828664|ref|ZP_04454733.1| hypothetical protein GCWU000342_00730 [Shuttleworthia satelles DSM 14600] gi|229793258|gb|EEP29372.1| hypothetical protein GCWU000342_00730 [Shuttleworthia satelles DSM 14600] Length = 476 Score = 61.4 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 55/311 (17%), Positives = 109/311 (35%), Gaps = 41/311 (13%) Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIET----VYIPEKSR-GT 115 R + + + + ++E + K L+ + + P ET V + Sbjct: 44 RERMAEKYPKVSEADIEEVFAE---IKALI--DDQSLFTPDHYETYMDDVLKRRPTVVKA 98 Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175 LC++ C+L C +C+ R L+ G + ++ S Sbjct: 99 LCLNVAHDCNLACKYCFADEGTYCG------------GPRELMSFETGKNAFDFLIANSG 146 Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI 235 R+ + G GEPL N++ VKK ++ L K R TL+T+G + + +EI Sbjct: 147 NRRNLEVDFFG-GEPLMNWEVVKKLVAYGRQEEKLYDKKFRFTLTTNGVL-----LNDEI 200 Query: 236 GVMLAISLHAVSNDL--RNILVPINRKY-----PLEMLIDACRHYPGLSNARRITFEYVM 288 L + V + R + R + + ++ + +R Sbjct: 201 QDFLNREMSNVVLSIDGRKKIHNQMRPFRGGQDSYDRIVPKFQRLAESRGQQRYYARGTF 260 Query: 289 LKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSS 348 + D +D L++ + G +I++ P P +Y ++ F+E + Sbjct: 261 TRNNLDFSQDVLHIADL--GFK-QISVEPVVAQPTDDYALREEDLPKLFAEY--DRLAAE 315 Query: 349 PIRTPRGLDIL 359 +R G D Sbjct: 316 MVRR-MGTDED 325 >gi|295094228|emb|CBK83319.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Coprococcus sp. ART55/1] Length = 454 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 86/228 (37%), Gaps = 27/228 (11%) Query: 107 YIPEKSRGT----LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 I K R T LC+ C+L C +C+ G + + R+L+ Sbjct: 81 IIDFKKRKTVVKALCLHIAHDCNLACRYCFAGEGEYKGD-------------RALMSLEV 127 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 + ++ +V S R+ + G GEPL N+D VKK++ K R TL+T+ Sbjct: 128 AKKSLDFLVANSGLRRNLEVDFFG-GEPLMNWDVVKKTVEYGRSLEEKYDKKFRFTLTTN 186 Query: 223 GFV--PNIARVG--EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN 278 G + I E V+L+I +D + N K ++++ + + Sbjct: 187 GVLLNDEIMEFANREMANVVLSIDGRKEVHDY--MRPTRNGKGSYDVILSKFQEFAKKRA 244 Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 + D +D L++ + G +I++ P P Y Sbjct: 245 GKSYYVRGTYTHNNLDFSQDVLHMADL--GFD-QISVEPVVSLPDEPY 289 >gi|168334725|ref|ZP_02692857.1| Radical SAM domain protein [Epulopiscium sp. 'N.t. morphotype B'] Length = 451 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 39/194 (20%), Positives = 75/194 (38%), Gaps = 18/194 (9%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L C +C+ A E + R L+ G I+ ++ S Sbjct: 94 ALCLHVAHDCNLGCKYCF-----------AGE--GEYHGPRGLMSVEVGKRAIDFLIESS 140 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVG 232 R + G GEPL NF V++ + A+ + K R TL+T+G + I Sbjct: 141 GVRTNLEVDFFG-GEPLMNFKVVRELVDYANSRAEQTNKKFRFTLTTNGVLLNDQIIDFL 199 Query: 233 EEIGVMLAISLHAVSNDLRNILVPI-NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291 E + +SL ++ + + P N K ++++ + ++ Sbjct: 200 NEYMDNVVLSLDG-RPEINDQMRPTANGKGSYDIILPKFKKLVEKRGGKKYYIRGTFTHK 258 Query: 292 INDSPRDALNLIKI 305 D +D L++ ++ Sbjct: 259 NLDFAKDVLHIAEL 272 >gi|326791643|ref|YP_004309464.1| radical SAM protein [Clostridium lentocellum DSM 5427] gi|326542407|gb|ADZ84266.1| Radical SAM domain protein [Clostridium lentocellum DSM 5427] Length = 449 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 49/266 (18%), Positives = 98/266 (36%), Gaps = 41/266 (15%) Query: 50 FQGMSDISQ-EVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF-PARCIGGPVEIETVY 107 + +S+ + + F I E+ L+ + + ET+ Sbjct: 32 VEEAEKLSKEALIEKYKEEFEIEAINEAYEE---------LMSLKEEGMLYTADQYETLV 82 Query: 108 IPEKSR----GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163 +R LC+ C+L C +C+ G E RSL+ G Sbjct: 83 PAFLNREPVVKALCLHVAHDCNLKCKYCFAGE---------GEYHGH----RSLMSIEVG 129 Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD---SMGLSFSKRRITLS 220 + ++ ++ S RK I G GEPL N++ VK++++ A + G +F R T++ Sbjct: 130 KKAVDFIIENSKHRKNIEIDFFG-GEPLMNWEMVKETVAYAREREKETGKNF---RFTMT 185 Query: 221 TSGFV---PNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276 T+G + I + E + V+L++ ND ++ N K ++++ + Sbjct: 186 TNGVLLNDEIIDYLNENMHNVVLSLDGRPEVND--HMRPTANGKGSYDVILPKFKKLVEK 243 Query: 277 SNARRITFEYVMLKGINDSPRDALNL 302 ++ D D ++ Sbjct: 244 RGNQKYYLRGTFTHHNLDFSEDVKHM 269 >gi|222528638|ref|YP_002572520.1| radical SAM domain-containing protein [Caldicellulosiruptor bescii DSM 6725] gi|222455485|gb|ACM59747.1| Radical SAM domain protein [Caldicellulosiruptor bescii DSM 6725] Length = 453 Score = 61.1 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 43/240 (17%), Positives = 81/240 (33%), Gaps = 25/240 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 +C+ C L C +C+ + R L+ G + I ++ S Sbjct: 92 AMCLHVAHDCDLRCRYCFASSGSFK-------------QERKLMSFDVGKKAIGFLLQNS 138 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS---MGLSFSKRRITLSTSGFVPNIARV 231 R+ + G GEPL NFD VKK + A + S T +T+ I + Sbjct: 139 GSRQNLEVDFFG-GEPLLNFDVVKKIVEYAREEEKKYNKKISFTLTTNATNLSDDIIEYL 197 Query: 232 GEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 + + V+L+ ND + + N + + + N + Sbjct: 198 NQNMENVVLSHDGRPEVNDF--MRIDRNGNGTYSKITNNILRFIQKRNGKTYYVRGTFTA 255 Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY--LCSDQKDIVTFSECIKRSGYSS 348 D +D L+L + GI +I++ P + S + I + + ++ Sbjct: 256 KNLDFSKDVLHLYSL--GIK-EISVEPVVLDKSSPWAIRESHIERIKEEYDILAEEYINA 312 >gi|225377733|ref|ZP_03754954.1| hypothetical protein ROSEINA2194_03384 [Roseburia inulinivorans DSM 16841] gi|225210410|gb|EEG92764.1| hypothetical protein ROSEINA2194_03384 [Roseburia inulinivorans DSM 16841] Length = 458 Score = 60.7 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 84/231 (36%), Gaps = 27/231 (11%) Query: 104 ETVYIPEKSRGT----LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLG 159 E + K R T LC+ C+L C +C+ E + R+L+ Sbjct: 85 ENYMMDFKKRPTVVKALCLHIAHDCNLACRYCFAEE---------GEYHGR----RALMS 131 Query: 160 DFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITL 219 G + ++ ++ S R+ + G GEPL N+ VK ++ + + R TL Sbjct: 132 FETGKKALDFLIANSGNRRNLEVDFFG-GEPLMNWQVVKDLVAYGREQEKIHNKNFRFTL 190 Query: 220 STSGFV--PNIARVG--EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275 +T+G + I E V+L+I +D Y L ++ + + Sbjct: 191 TTNGVLLNDEIMEFANKEMGNVVLSIDGRKEVHDHMRPFRKGAGSYDL--IVPKFQKFAD 248 Query: 276 LSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 N + D D L+L + G +I++ P P +Y Sbjct: 249 SRNQDKYYVRGTFTHNNLDFSNDVLHLADL--GFK-QISVEPVVAQPTEDY 296 >gi|302871247|ref|YP_003839883.1| Radical SAM domain protein [Caldicellulosiruptor obsidiansis OB47] gi|302574106|gb|ADL41897.1| Radical SAM domain protein [Caldicellulosiruptor obsidiansis OB47] Length = 453 Score = 60.7 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 44/240 (18%), Positives = 82/240 (34%), Gaps = 25/240 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 +C+ C L C +C+ + R L+ G + I+ ++ S Sbjct: 92 AMCLHVAHDCDLRCRYCFASSGSFK-------------QERKLMSFDVGKKAIDFLLQNS 138 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS---MGLSFSKRRITLSTSGFVPNIARV 231 R+ + G GEPL NFD VKK + A + S T +T+ I + Sbjct: 139 GSRQNLEVDFFG-GEPLLNFDVVKKIVEYAREEEKKYNKKISFTLTTNATNLSDDIIEYL 197 Query: 232 GEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 + I V+L+ ND + + N + + + N + Sbjct: 198 NQNIENVVLSHDGRPQVNDF--MRIDRNGNGTYSKITNNILRFIQKRNGKTYYVRGTFTA 255 Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY--LCSDQKDIVTFSECIKRSGYSS 348 D +D L+L + GI +I++ P + S + I + + ++ Sbjct: 256 KNLDFSKDVLHLYSL--GIK-EISVEPVVLDKSSPWAIRESHIERIKEEYDILAEEYINA 312 >gi|295108468|emb|CBL22421.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Ruminococcus obeum A2-162] Length = 454 Score = 60.7 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 42/195 (21%), Positives = 73/195 (37%), Gaps = 20/195 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L C +C+ E + R+L+ G + ++ ++ S Sbjct: 98 ALCLHIAHDCNLACRYCFAEE---------GEYHGR----RALMSFEVGKKALDFLIANS 144 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV--- 231 RK + G GEPL N+ VK ++ + L K R TL+T+G + N + Sbjct: 145 GSRKNLEVDFFG-GEPLMNWQVVKDLVAYGREQEKLHNKKFRFTLTTNGVLLNDEVMEFC 203 Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 E V+L++ +D Y L +I R + N + Sbjct: 204 NKEMGNVVLSVDGRKEVHDYMRPFRKGAGSYDL--IIPKFRKFAESRNQDKYYVRGTFTH 261 Query: 291 GINDSPRDALNLIKI 305 D +D L+L + Sbjct: 262 HNLDFSKDVLHLADL 276 >gi|253578289|ref|ZP_04855561.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850607|gb|EES78565.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 455 Score = 60.3 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 48/251 (19%), Positives = 85/251 (33%), Gaps = 29/251 (11%) Query: 62 HLLNQHF---SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118 L + I K+ DG L + + V E + LC+ Sbjct: 48 EKLENKYNREDIETSVRECNKLKEDG---MLF---TKDVYENVIEEFSNNRQTVVKALCL 101 Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 C+L C +C+ E + R+L+ G + ++ ++ S RK Sbjct: 102 HIAHDCNLACRYCFAEE---------GEYHGR----RALMSYEVGKKALDFLIANSGSRK 148 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV----GEE 234 + G GEPL N+ VK + + L K R TL+T+G + N + E Sbjct: 149 NLEVDFFG-GEPLMNWQVVKDLVKYGREQEKLHNKKFRFTLTTNGVLLNDEVMEFCNKEM 207 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 V+L++ +D Y L ++ + + N + D Sbjct: 208 GNVVLSVDGRKEVHDYMRPFRKGAGSYDL--IMPKFQKFAESRNQDKYYVRGTFTHHNLD 265 Query: 295 SPRDALNLIKI 305 +D L+L + Sbjct: 266 FSKDVLHLADL 276 >gi|332981504|ref|YP_004462945.1| Radical SAM domain-containing protein [Mahella australiensis 50-1 BON] gi|332699182|gb|AEE96123.1| Radical SAM domain protein [Mahella australiensis 50-1 BON] Length = 454 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 39/204 (19%), Positives = 77/204 (37%), Gaps = 30/204 (14%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 +C+ C++ CS+C+ T R+L+ G ++ +V S Sbjct: 96 AMCLHLSHDCNMRCSYCFASTGDFGGQ-------------RTLMTADTGRAALDFLVRHS 142 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSL---SIASDSMGLSFSKRRITLSTSGFV---PNI 228 R+ + G GEPL NFD +K + S G R T++T+G I Sbjct: 143 GSRRHLEVDFFG-GEPLMNFDAMKDIVEYGRRLEQSSGKHI---RFTVTTNGIALDQEKI 198 Query: 229 ARVGEEIG-VMLAISLH-AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286 + + + V+L++ A+++ +R + N K ++++ + Sbjct: 199 KYINDNMDNVVLSMDGRPAINDAMRKTI---NGKGTYDIIMPKFKSLVDNRKHGDYYIRG 255 Query: 287 VMLKGINDSPRDALNLIKILKGIP 310 K D D ++++ KG Sbjct: 256 TFTKRNLDFAEDVMHIVD--KGFD 277 >gi|153854676|ref|ZP_01995926.1| hypothetical protein DORLON_01924 [Dorea longicatena DSM 13814] gi|149752780|gb|EDM62711.1| hypothetical protein DORLON_01924 [Dorea longicatena DSM 13814] Length = 465 Score = 60.3 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 76/207 (36%), Gaps = 20/207 (9%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 IE V + LC+ C+L C +C+ E + R+L+ Sbjct: 95 IEEVKKRKTVVKALCLHIAHDCNLACKYCFAEE---------GEYHGR----RALMSYEV 141 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 G + ++ ++ S R+ + G GEPL N+ VK ++ + + R T++T+ Sbjct: 142 GKKALDFLIKNSGNRRNLEVDFFG-GEPLMNWQVVKDLVAYGREQEKIHNKHFRFTITTN 200 Query: 223 GFV--PNIARV--GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN 278 G + I E V+L++ ND + N K ++++ + N Sbjct: 201 GVLLNDEIQEFVNKEMDNVVLSLDGRKEINDQ--MRPFRNGKGSYDLIVPKFQKLAESRN 258 Query: 279 ARRITFEYVMLKGINDSPRDALNLIKI 305 + + D D ++ + Sbjct: 259 QEKYYIRGTFTRNNLDFSNDIMHFADL 285 >gi|312879492|ref|ZP_07739292.1| glycyl-radical enzyme activating protein family [Aminomonas paucivorans DSM 12260] gi|310782783|gb|EFQ23181.1| glycyl-radical enzyme activating protein family [Aminomonas paucivorans DSM 12260] Length = 301 Score = 60.3 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 48/274 (17%), Positives = 84/274 (30%), Gaps = 44/274 (16%) Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153 RCIG +E+ S V + + C C + L A E++ + L Sbjct: 53 DRCIGCGRCVESCPHKALSFVNDGVHVDLSRCVGCGVCASVCPSL-----ALELVGRTLT 107 Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213 L+ + E + G GEPL + + + L + Sbjct: 108 VPELVAEARKDELFYDQSGGG-------VTFSG-GEPLMQPEFLLEVLE------ACGAA 153 Query: 214 KRRITLSTSGFVP--NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 + T GF P I RV + L H R L + + Sbjct: 154 GFHRAVDTCGFAPEETILRVARHTDLFLYDLKHMDPEAHR--LYTGVDNVLILSNLRRLD 211 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI---NLIPFNPWPGCEY-- 326 R+ ++ GINDSP + L + + + + NL+P++ +Y Sbjct: 212 E-----AGARLNIRVPLIPGINDSPENLDALGRFVASLN-HVAGLNLLPYHTAGRSKYPK 265 Query: 327 ----------LCSDQKDIVTFSECIKRSGYSSPI 350 + + +E ++R G I Sbjct: 266 WGMTYRLEETPPPTEHQVRVAAEALRRQGLEVTI 299 >gi|302339995|ref|YP_003805201.1| pyruvate formate-lyase activating enzyme [Spirochaeta smaragdinae DSM 11293] gi|301637180|gb|ADK82607.1| pyruvate formate-lyase activating enzyme [Spirochaeta smaragdinae DSM 11293] Length = 245 Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 48/240 (20%), Positives = 87/240 (36%), Gaps = 41/240 (17%) Query: 97 IGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC-----YTGTQKLVRNLTAEEILLQV 151 G +ET + + + +Q GC L C +C + T +TA EI+ Sbjct: 5 TGRIHSLETCGMVDGPGIRFLIFTQ-GCPLRCLYCHNPDTWKRTGGKE--VTAHEIIE-- 59 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 AR + EPL D V ++L + + + G+ Sbjct: 60 -TARKYKNYLLASGGGITITGG---------------EPLFQADFV-QALLLEAKAAGI- 101 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAI-SLHAVSNDLRNILVPINRKYPLEMLIDAC 270 + TSGF P AR L + + + L + ++ Y L ++ Sbjct: 102 ----HTAVDTSGFAPPAARKAVLPHADLVLLDIKSAVPALFKKISGVSITYTLA-TLNEL 156 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYLC 328 + + + +V++ G+ D P DA L +LKG P K+ ++PF+ ++ Sbjct: 157 KEW-----NVPVWIRHVVVPGLTDKPEDAEKLAHMLKGYPNIEKVEILPFHKMGEYKWEQ 211 >gi|163814895|ref|ZP_02206283.1| hypothetical protein COPEUT_01046 [Coprococcus eutactus ATCC 27759] gi|158449834|gb|EDP26829.1| hypothetical protein COPEUT_01046 [Coprococcus eutactus ATCC 27759] Length = 461 Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 85/228 (37%), Gaps = 27/228 (11%) Query: 107 YIPEKSRGT----LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 I K R T LC+ C+L C +C+ G + + R+L+ Sbjct: 81 IIDFKKRKTVVKALCLHIAHDCNLACRYCFAGEGEYKGD-------------RALMSLEV 127 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 + ++ +V S R+ + G GEPL N+D VKK++ K R TL+T+ Sbjct: 128 AKKSLDFLVANSGFRRNLEVDFFG-GEPLMNWDVVKKTVEYGRSLEEKYDKKFRFTLTTN 186 Query: 223 GFV--PNIARVG--EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN 278 G + I E V+L+I +D + N K ++++ + + Sbjct: 187 GVLLNDEIMEFANREMANVVLSIDGRKEVHDY--MRPTRNGKGSYDVILSKFQEFAKKRA 244 Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 + D D L++ + G +I++ P P Y Sbjct: 245 GKSYYVRGTYTHNNLDFSNDVLHMADL--GFD-QISVEPVVSLPDEPY 289 >gi|312128238|ref|YP_003993112.1| Radical SAM domain-containing protein [Caldicellulosiruptor hydrothermalis 108] gi|311778257|gb|ADQ07743.1| Radical SAM domain protein [Caldicellulosiruptor hydrothermalis 108] Length = 453 Score = 59.9 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 80/240 (33%), Gaps = 25/240 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 +C+ C L C +C+ + R L+ G + I+ ++ S Sbjct: 92 AMCLHVAHDCDLRCRYCFASSGSFK-------------QERKLMSFDVGKKAIDFLLQNS 138 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS---MGLSFSKRRITLSTSGFVPNIARV 231 R+ + G GEPL NFD VK + A S T +T+ I + Sbjct: 139 GSRQNLEVDFFG-GEPLLNFDVVKNIVEYARQEEKKYNKKISFTLTTNATNLSDDIIEYL 197 Query: 232 GEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 + + V+L+ ND I N Y + D + N + Sbjct: 198 NQNMENVVLSHDGRPEVNDFMRIDRDGNGTYS--KITDNILRFIQKRNGKTYYVRGTFTA 255 Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY--LCSDQKDIVTFSECIKRSGYSS 348 D +D L+L + GI +I++ P + S + I + + ++ Sbjct: 256 KNLDFSKDVLHLYSL--GIK-EISIEPVVLDKSSPWAIRESHIERIKQEYDILAEEYINA 312 >gi|289808611|ref|ZP_06539240.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 48 Score = 59.9 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 27/46 (58%) Query: 52 GMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCI 97 M+DI++ +R L + I PE+V+E+ S DGT KW + + + Sbjct: 3 EMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV 48 >gi|154482681|ref|ZP_02025129.1| hypothetical protein EUBVEN_00357 [Eubacterium ventriosum ATCC 27560] gi|149736457|gb|EDM52343.1| hypothetical protein EUBVEN_00357 [Eubacterium ventriosum ATCC 27560] Length = 444 Score = 59.5 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 67/195 (34%), Gaps = 20/195 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L C +C+ E R + F + ++ + Sbjct: 82 ALCLHIAHDCNLACKYCFAEE---------GE-----YHGRRAMMSFEVGKKALDFLVAN 127 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV--- 231 G +++ V GEPL N+D VK+ + + K R TL+T+G + N + Sbjct: 128 SGSRVNLEVDFFGGEPLMNWDVVKQLVEYGRSLEESNHKKFRFTLTTNGVLLNDEIMEYL 187 Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 E V+L++ ND + K ++++ + N + Sbjct: 188 NKEMSNVVLSLDGRKEVND--RMRPFRTGKGSYDLIVPKFQKLAESRNQSNYYVRGTFTR 245 Query: 291 GINDSPRDALNLIKI 305 D D + + Sbjct: 246 DNLDFSEDVKHFADL 260 >gi|262066454|ref|ZP_06026066.1| Fe-S oxidoreductase [Fusobacterium periodonticum ATCC 33693] gi|291379881|gb|EFE87399.1| Fe-S oxidoreductase [Fusobacterium periodonticum ATCC 33693] Length = 284 Score = 59.5 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 40/237 (16%), Positives = 86/237 (36%), Gaps = 38/237 (16%) Query: 124 CSLTCSFC---YTGTQKLVRNL--TAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 C+L C FC T +L R EIL ++ + Sbjct: 28 CNLNCIFCECGATKKIQLERQKFKNMNEILEEISAVLKDIKPDY---------------- 71 Query: 179 ISNIVMMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236 I G GEP + D N+ +++ G +I L T+ + + +E+ Sbjct: 72 ---ITFSGSGEPTLSLDLGNISRAIKEDLKYQG------KICLITNSLLLADENLMKELE 122 Query: 237 V--MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 ++ +L+ ++ D+ +V + + +E + + + +I E +L+ +ND Sbjct: 123 YIDLIVPTLNTLTQDIFEKIVRPDYRTSVEEIRKGFINLNKSNYKGKIWIEIFILENVND 182 Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWP----GCEYLCSDQKDIVTFSECIKRSGYS 347 S + +N+ LK + + I N + + I + ++ +G + Sbjct: 183 SDENFVNIANFLKSEKIRYDKIQLNTIDRVGAERDLKAISFEKISRAKKILEENGLN 239 >gi|307266562|ref|ZP_07548094.1| Radical SAM domain protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306918416|gb|EFN48658.1| Radical SAM domain protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 461 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 42/248 (16%), Positives = 91/248 (36%), Gaps = 28/248 (11%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 +C++ C+L C +C+ T + R L+ G + I+ ++ S Sbjct: 95 AMCLNVAHDCNLRCKYCFASTGDFKGS-------------RKLMDFETGKKAIDFLIKSS 141 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIARV 231 R+ + G GEPL NFD VKK + + + + T++T+ + I Sbjct: 142 GKRRNIEVDFFG-GEPLLNFDVVKKLVEYGKEKAKENKKVIKFTITTNAVLLDDEKIKYF 200 Query: 232 GEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 E V+L++ ND N+ + ++ + ++ + + + Sbjct: 201 NENFSNVVLSLDGRKEVND--NMRIRVDGSGTYDTIVPKIKKFVESRGKKEYYVRGTFTS 258 Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ--KDIVTFSECIKRSGYSS 348 D D L++ + G+ +I++ P +Y ++ + I+ + + Sbjct: 259 KNLDFANDVLHIADL--GVY-EISVEPVVEKEDKDYTLKEEHLERILNEYDRLAEEYIE- 314 Query: 349 PIRTPRGL 356 R G Sbjct: 315 --RYEEGR 320 >gi|153810179|ref|ZP_01962847.1| hypothetical protein RUMOBE_00560 [Ruminococcus obeum ATCC 29174] gi|149833358|gb|EDM88439.1| hypothetical protein RUMOBE_00560 [Ruminococcus obeum ATCC 29174] Length = 466 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 73/195 (37%), Gaps = 20/195 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L C +C+ E + R+L+ G + ++ ++ S Sbjct: 110 ALCLHIAHDCNLACRYCFAEE---------GEYHGR----RALMSFEVGKKALDFLIANS 156 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV--- 231 RK + G GEPL N+ VK ++ + L K R TL+T+G + N + Sbjct: 157 GSRKNLEVDFFG-GEPLMNWQVVKDLVAYGREQEKLHNKKFRFTLTTNGVLLNDEVMEFC 215 Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 E V+L++ +D Y L +I + + N + Sbjct: 216 NKEMGNVVLSVDGRKEVHDYMRPFRKGAGSYDL--IIPKFQKFAESRNQDKYYVRGTFTH 273 Query: 291 GINDSPRDALNLIKI 305 D +D L+L + Sbjct: 274 HNLDFSKDVLHLADL 288 >gi|313114194|ref|ZP_07799746.1| radical SAM domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310623603|gb|EFQ07006.1| radical SAM domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 487 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 79/221 (35%), Gaps = 24/221 (10%) Query: 93 PARCIGGPVEIETVYIPEKSRGT----LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 A + P E + K+R T LC+ C+L CS+C+ + + Sbjct: 78 EAGKLWTPDTYENMAFDFKNRNTVVKALCLHVAHTCNLNCSYCFASQGRYQGD------- 130 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 R+L+ G ++ ++ S R+ + G GEPL NFD VKK ++ + Sbjct: 131 ------RALMSFEVGKRAMDFLIENSGTRRNLEVDFFG-GEPLMNFDMVKKLVAYCREQE 183 Query: 209 GLSFSKRRITLSTSGFV---PNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLE 264 + R T++T+G + I +E V+L++ ND + Sbjct: 184 KIHNKNFRFTMTTNGMLIDDDVIDFCNKECHNVVLSLDGRKEVND--RFRKDYAGHGSYD 241 Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ + + + D D ++ + Sbjct: 242 TIVPKFQEFVKKRGDKNYYMRGTYTHYNTDFTNDIFHMADL 282 >gi|218283069|ref|ZP_03489164.1| hypothetical protein EUBIFOR_01750 [Eubacterium biforme DSM 3989] gi|218216138|gb|EEC89676.1| hypothetical protein EUBIFOR_01750 [Eubacterium biforme DSM 3989] Length = 464 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 73/198 (36%), Gaps = 26/198 (13%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L CS+C+ K + R+L+ G ++ +V S Sbjct: 98 ALCLHIAHTCNLNCSYCFASQGKYHGD-------------RALMSFETGKRALDFLVENS 144 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSL---SIASDSMGLSFSKRRITLSTSGFV--PNIA 229 R+ + G GEPL NFD VK+ + G +F R TL+T+G + ++ Sbjct: 145 GTRRNLEVDFFG-GEPLMNFDVVKQLVAYARSIEKEAGKNF---RFTLTTNGMLIDDDVI 200 Query: 230 RVG--EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 E V+L++ +D V + K + ++ + + Sbjct: 201 EFANKEMSNVVLSLDGRKEVHD--RYRVDYSGKGSFDTIVPKFQKLVKAREGKNYYMRGT 258 Query: 288 MLKGINDSPRDALNLIKI 305 D +D ++ + Sbjct: 259 FTHANPDFLKDVQQMLDL 276 >gi|323704620|ref|ZP_08116198.1| Radical SAM domain protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323536082|gb|EGB25855.1| Radical SAM domain protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 453 Score = 58.7 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 70/196 (35%), Gaps = 22/196 (11%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L C +C+ R L+ + ++ +V S Sbjct: 95 ALCLHVSHDCNLRCEYCFAQKGDYN-------------TGRKLMSKEVAFKAVDYLVKNS 141 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASD-SMGLSFSKRRITLSTSGFV---PNIAR 230 GR+ I G GEPL NFD VK ++ + K T++T+G + I Sbjct: 142 SGRRNIEIDFFG-GEPLLNFDVVKATVDYGRSLEDKFN-KKFYFTITTNGTLLDDEKIKF 199 Query: 231 VGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 + + + V+++I +D N Y + ++ + N + Sbjct: 200 LNKNMDNVVISIDGRKEIHDEIRHYASGNGSY--DKIVPLAKKLVEERNGKSYFIRGTFT 257 Query: 290 KGINDSPRDALNLIKI 305 K D +D +L + Sbjct: 258 KKNKDFSKDVFHLADL 273 >gi|160893377|ref|ZP_02074163.1| hypothetical protein CLOL250_00927 [Clostridium sp. L2-50] gi|156864952|gb|EDO58383.1| hypothetical protein CLOL250_00927 [Clostridium sp. L2-50] Length = 454 Score = 58.7 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 85/228 (37%), Gaps = 27/228 (11%) Query: 107 YIPEKSRGT----LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 I K R T LC++ C+L C +C+ G + + R L+ Sbjct: 81 IIDFKKRKTVVKALCINIAHDCNLACRYCFAGEGEYKGD-------------RGLMPLDI 127 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 + ++ +V S R + G GEPL N+D VK+++ K R TL+T+ Sbjct: 128 AKKSLDFLVANSGNRVNLEVDFFG-GEPLMNWDVVKETVRYGRSLEEKHNKKFRFTLTTN 186 Query: 223 GFV--PNIARVG--EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN 278 G + + E V+L+I +D + N K ++L+ + + Sbjct: 187 GVLLNDEVMEFANKEMANVVLSIDGRKEIHDY--MRPTRNGKGSYDLLLPKFQEFAKKRA 244 Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 + D +D L++ + G +I++ P P Y Sbjct: 245 GKSYYVRGTYTHNNLDFSKDVLHMADL--GFD-QISIEPVVSLPDEPY 289 >gi|27597164|dbj|BAC55153.1| putative Fe-S-cluster redox enzyme homologue [Halomonas sp. #593] Length = 45 Score = 58.7 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 4/42 (9%) Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRG 46 ++ +L+GM REE+E L IG + R +Q+ KWI+ G Sbjct: 8 QRPNLLGMTREEMEAFFLSIG----EKKFRAAQVMKWIHQEG 45 >gi|225027423|ref|ZP_03716615.1| hypothetical protein EUBHAL_01679 [Eubacterium hallii DSM 3353] gi|224955250|gb|EEG36459.1| hypothetical protein EUBHAL_01679 [Eubacterium hallii DSM 3353] Length = 454 Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 41/216 (18%), Positives = 76/216 (35%), Gaps = 23/216 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L C +C+ + + R L+ G ++ +V S Sbjct: 92 ALCLHIAHDCNLACRYCFAEEGEYKGH-------------RELMSAKVGKAALDFLVANS 138 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVG 232 R + G GEP NF VK+ + R TL+T+G + I Sbjct: 139 GNRHNLEVDFFG-GEPTMNFGVVKEVVEYGRSLEEKHNKHFRFTLTTNGVLLNDEIMEFA 197 Query: 233 --EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 E V+L++ +D + N K ++++ + + ++ Sbjct: 198 NKEMDNVVLSVDGRKEIHDY--MRPTRNGKPSYDLIMPKFIRFAESRHQQKYYVRGTFTN 255 Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 D +D L+L + G +I++ P P Y Sbjct: 256 RNLDFSKDVLHLADL--GFE-QISMEPVVGQPEEPY 288 >gi|297544500|ref|YP_003676802.1| Radical SAM domain-containing protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842275|gb|ADH60791.1| Radical SAM domain protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 461 Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 72/195 (36%), Gaps = 20/195 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 +C++ C+L C +C+ T + R L+ G + I+ ++ S Sbjct: 95 AMCLNVAHDCNLRCKYCFASTGDFKGS-------------RKLMDFETGKKAIDFLIKSS 141 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIARV 231 R+ + G GEPL NF+ VK+ + + + T++T+ + I Sbjct: 142 GKRQNIEVDFFG-GEPLLNFEVVKQLVEYGKQKAKENKKTIKFTITTNAVLLDDEKIKYF 200 Query: 232 GEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 E V+L++ ND ++ V +N + ++ + + + Sbjct: 201 NENFSNVVLSLDGRKEVND--DMRVRVNGSGTYDTIVPKIKKFVESRGKKEYYVRGTFTA 258 Query: 291 GINDSPRDALNLIKI 305 D D L++ + Sbjct: 259 KNLDFANDVLHIADL 273 >gi|317502037|ref|ZP_07960219.1| radical SAM domain-containing protein [Lachnospiraceae bacterium 8_1_57FAA] gi|331090447|ref|ZP_08339328.1| hypothetical protein HMPREF1025_02911 [Lachnospiraceae bacterium 3_1_46FAA] gi|316896511|gb|EFV18600.1| radical SAM domain-containing protein [Lachnospiraceae bacterium 8_1_57FAA] gi|330401194|gb|EGG80787.1| hypothetical protein HMPREF1025_02911 [Lachnospiraceae bacterium 3_1_46FAA] Length = 467 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 72/195 (36%), Gaps = 20/195 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L C +C+ E + R+L+ G + ++ ++ S Sbjct: 107 ALCLHIAHDCNLACRYCFAEE---------GEYHGR----RALMSYEVGKKALDFLIANS 153 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARV- 231 R+ + G GEPL N+ VK ++ + + R T++T+G + I Sbjct: 154 GKRRNLEVDFFG-GEPLMNWQVVKDLVAYGREQEKIHDKHFRFTVTTNGVLLNDEIQEFV 212 Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 E V+L++ ND + N K ++++ + N + + Sbjct: 213 NKEMDNVVLSLDGRKEVNDK--MRPFRNGKGSYDLIVPKFQKLAESRNQEKYYIRGTFTR 270 Query: 291 GINDSPRDALNLIKI 305 D D L+ + Sbjct: 271 NNLDFSNDVLHFADL 285 >gi|312623053|ref|YP_004024666.1| Radical SAM domain-containing protein [Caldicellulosiruptor kronotskyensis 2002] gi|312203520|gb|ADQ46847.1| Radical SAM domain protein [Caldicellulosiruptor kronotskyensis 2002] Length = 453 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 50/273 (18%), Positives = 85/273 (31%), Gaps = 32/273 (11%) Query: 86 RKWLLR----FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141 K L+ F IE +C+ C L C +C+ + Sbjct: 62 IKSLIEQGVLFSEDTYKDMNLIE---KRNPVIKAMCLHVAHDCDLRCRYCFASSGSFK-- 116 Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 R L+ G + I+ ++ S R+ + G GEPL NFD VK + Sbjct: 117 -----------QERKLMSFDVGKKAIDFLLQNSGSRQNLEVDFFG-GEPLLNFDVVKNIV 164 Query: 202 SIASDS---MGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPI 257 A S T +T+ I + + + V+L+ ND I Sbjct: 165 EYARHEENKYNKKISFTLTTNATNLSDDIIEYLNQNMENVVLSHDGRPEINDFMRIDRDG 224 Query: 258 NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIP 317 N Y + D + N + D +D L+L + GI +I+ P Sbjct: 225 NGTYN--KITDNILRFIQKRNGKTYYVRGTFTAKNLDFSKDVLHLYSL--GIK-EISDEP 279 Query: 318 FNPWPGCEY--LCSDQKDIVTFSECIKRSGYSS 348 + S + I + + ++ Sbjct: 280 VVLDKSSPWAIRESHIERIKEEYDILAEEYINA 312 >gi|300813209|ref|ZP_07093577.1| six-Cys-in-45 modification radical SAM protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512662|gb|EFK39794.1| six-Cys-in-45 modification radical SAM protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 449 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 48/290 (16%), Positives = 101/290 (34%), Gaps = 39/290 (13%) Query: 45 RGIRDFQGMSDISQEVRHLL---NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPV 101 + I DF+ ++ +L F ++ E +++ K+L+ Sbjct: 32 KIIDDFKDLTRT-----EILSKYKDEFPLVQLEEAYDEV------KFLVDEEMLFTEDAK 80 Query: 102 EIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF 161 ++ +Y P +C++ C+L C +C+ R L+ Sbjct: 81 YLKPMYNPANIIKAMCLNVAHDCNLRCKYCFASQGDFKG-------------KRLLMDLQ 127 Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221 G + ++ ++ S R+ + G GEPL NF+ VKK + R T++T Sbjct: 128 TGKDALDFLIKSSGYRRNLEVDFFG-GEPLMNFEVVKKLVEYGRIQEKKYNKHFRFTITT 186 Query: 222 SGFV---PNIARVGEEIG-VMLAISLH-AVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276 +G I + E + +L++ V++ +R + N K ++++ + Sbjct: 187 NGTYLTDDKIDFINENMDNCVLSLDGRKCVNDYMRPTI---NGKGSFDIIVPKFKKLISK 243 Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 + D D L++ K K ++ P Y Sbjct: 244 RGDKDYFIRGTFTNENLDFSED---LMEFYKQGFKKTSIEPVVTDEKEPY 290 >gi|303238883|ref|ZP_07325414.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2] gi|302593516|gb|EFL63233.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2] Length = 448 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 46/218 (21%), Positives = 81/218 (37%), Gaps = 27/218 (12%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKL--VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172 LC+ C+L C +C+ T R++ + E+ G + I+ ++ Sbjct: 93 ALCLHISHDCNLRCKYCFASTGDFGGQRSMMSSEV---------------GKKAIDFIIK 137 Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIAR 230 S RK + + G GEPL NF+ VK+ ++ A + R TL+T+ + +I Sbjct: 138 ESGSRKNLEVDLFG-GEPLMNFEVVKEIVAYAKSKEKEAGKNFRFTLTTNAILLNEDIKN 196 Query: 231 VGEEI--GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVM 288 E V+L+I ND V Y ++ + R Sbjct: 197 YVNENMQNVVLSIDGRKEVNDKMRYRVDGTGCYS--DIMPKIKDMADSRGQDRYYVRGTF 254 Query: 289 LKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 + D +D L+L +G +I++ P Y Sbjct: 255 TRENLDFSKDVLHLAD--EGFK-QISVEPVVAGKDSGY 289 >gi|210616298|ref|ZP_03291026.1| hypothetical protein CLONEX_03247 [Clostridium nexile DSM 1787] gi|210149853|gb|EEA80862.1| hypothetical protein CLONEX_03247 [Clostridium nexile DSM 1787] Length = 467 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 38/195 (19%), Positives = 73/195 (37%), Gaps = 20/195 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L C +C+ E + R+L+ G + ++ ++ S Sbjct: 107 ALCIHIAHDCNLACQYCFAEE---------GEYHGR----RALMSYEVGKKALDFLIANS 153 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARV- 231 RK + G GEPL N+ VK ++ + L R TL+T+G + + Sbjct: 154 GNRKNLEVDFFG-GEPLMNWQVVKDLVAYGREQEKLHDKHFRFTLTTNGVLLNDEVKEFV 212 Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 E V+L++ ND + N K ++++ + N + + Sbjct: 213 NKEMDNVVLSLDGRKEVNDK--MRPFRNGKGSYDLIVPKFQKLAESRNQEKYYIRGTFTR 270 Query: 291 GINDSPRDALNLIKI 305 D +D L+ + Sbjct: 271 DNLDFSKDVLHFADL 285 >gi|289578219|ref|YP_003476846.1| radical SAM protein [Thermoanaerobacter italicus Ab9] gi|289527932|gb|ADD02284.1| Radical SAM domain protein [Thermoanaerobacter italicus Ab9] Length = 461 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 71/195 (36%), Gaps = 20/195 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 +C++ C+L C +C+ T R L+ G + I+ ++ S Sbjct: 95 AMCLNVAHDCNLRCKYCFASTGDFK-------------SGRKLMDFETGKKAIDFLIKSS 141 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIARV 231 R+ + G GEPL NF VK+ + + + + T++T+ + I Sbjct: 142 GKRRNIEVDFFG-GEPLLNFKVVKQLVEYGKEKAKENKKVIKFTITTNAVLLDDEKIKYF 200 Query: 232 GEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 E V+L++ ND I V N Y + ++ + + + Sbjct: 201 NENFSNVVLSLDGRKEVNDSMRIRVDGNGSY--DTIVPKIKKFVESRGKKEYYVRGTFTA 258 Query: 291 GINDSPRDALNLIKI 305 D +D L++ + Sbjct: 259 KNLDFTKDVLHIADL 273 >gi|210623789|ref|ZP_03294049.1| hypothetical protein CLOHIR_02000 [Clostridium hiranonis DSM 13275] gi|210153371|gb|EEA84377.1| hypothetical protein CLOHIR_02000 [Clostridium hiranonis DSM 13275] Length = 465 Score = 58.4 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 50/255 (19%), Positives = 92/255 (36%), Gaps = 38/255 (14%) Query: 62 HLLNQHFSIIYPEIVDEKIS---CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCV 118 LL F+ E ++I+ +G LL P + E LC+ Sbjct: 52 ELLKDEFTKEQVEEAWDEIANLEEEG----LLYTEDNYQFHPAFV----HREPVVKALCL 103 Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 + C+L C +C+ L+ G ++ +V S R+ Sbjct: 104 NVAHDCNLKCKYCFAKQGNFGG-------------KPELMSFEVGKRALDFLVANSGSRR 150 Query: 179 ISNIVMMGMGEPLCNFDNVKKSL---SIASDSMGLSFSKRRITLSTSGFV---PNIARVG 232 +I G GEPL NF+ VK+ + G + R T++T+G + I + Sbjct: 151 NLDIDFFG-GEPLMNFEVVKQLVEYGRSIEKEHGKNM---RFTITTNGLLLNDEIIDYIN 206 Query: 233 EEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291 E + V+L++ ND N+ + IN K ++++ + + + Sbjct: 207 ENMHNVVLSLDGRKAVND--NMRMTINDKGSYDVIVPKMQKLVEKRPKDKYYYVRGTFTR 264 Query: 292 IN-DSPRDALNLIKI 305 N D +D L+ + Sbjct: 265 ENLDFSKDILHFRDL 279 >gi|260891959|ref|YP_003238056.1| Radical SAM domain protein [Ammonifex degensii KC4] gi|260864100|gb|ACX51206.1| Radical SAM domain protein [Ammonifex degensii KC4] Length = 452 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 84/230 (36%), Gaps = 36/230 (15%) Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168 P + +LC+ C+L C++C+ G A ++ + ++ Sbjct: 77 PSFAPKSLCLMVAQACNLRCNYCFAGEGD--------------YGAAGIMSEEVARSAVD 122 Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD---SMGLSFSKRRITLSTSGFV 225 ++ + R+ I G GEPL NF V ++ + +G S +T + Sbjct: 123 FLLESAGPRRTVEIDFFG-GEPLLNFPVVVATVRYGKERARKLGKEISFT-LTTNAVLLD 180 Query: 226 PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYP-----LEMLIDACRH-YPGLSNA 279 R E V L +SL D R + R++P ++D R Y + Sbjct: 181 EEKERFLLEEEVNLVLSL-----DGRPEVHDRFRRFPDGTGSYRQVLDNIRRCYHNWAFR 235 Query: 280 RRITFEYV--MLKGIN-DSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 R ++ Y+ +N D RD +L +G I+L P P Y Sbjct: 236 PRSSYCYLRGTFTRMNLDFSRDFKHLAD--QGFR-HISLEPVVAPPSAPY 282 >gi|167770639|ref|ZP_02442692.1| hypothetical protein ANACOL_01985 [Anaerotruncus colihominis DSM 17241] gi|167667234|gb|EDS11364.1| hypothetical protein ANACOL_01985 [Anaerotruncus colihominis DSM 17241] Length = 457 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 80/223 (35%), Gaps = 22/223 (9%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 +C+ C+L C +C+ T E + R L+ G I+ ++ S Sbjct: 98 AMCLHIAHDCNLRCKYCFADT---------GEYMGH----RELMSPETGRAAIDYLIDHS 144 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV--- 231 GR + + G GEPL NF+ V++ + A R T++T+G + + ++ Sbjct: 145 AGRHNLEVDLFG-GEPLMNFETVREVVRYARSLEKKHGKLFRFTITTNGILLDDDKIDFI 203 Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYP-LEMLIDACRHYPGLSNARRITFEYVML 289 E V+L+I ND V Y + + Sbjct: 204 NQEMSNVVLSIDGRREVNDRVRSRVDGTGSYDRIVPNFQKLVRLRKQGPYNQYYARGTFT 263 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 K D D L+L + G ++++ P P Y +++ Sbjct: 264 KYNKDFAEDVLHLSGL--GFD-QVSVEPVVSDPTMPYALTEED 303 >gi|304440494|ref|ZP_07400381.1| radical SAM domain protein [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370972|gb|EFM24591.1| radical SAM domain protein [Peptoniphilus duerdenii ATCC BAA-1640] Length = 451 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 81/221 (36%), Gaps = 28/221 (12%) Query: 86 RKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAE 145 K L + P ++ VY P+ +C+ C+L C +C+ Sbjct: 65 IKELEKEGMLFTEDPRLMKAVYNPQNIIKAMCLHVSHDCNLRCKYCFASQGDFH-----G 119 Query: 146 EILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS 205 E R L+ G I+ ++ S R+ + G GEPL NF+ VKK + Sbjct: 120 E--------RLLMDLETGKAAIDFLLENSGNRRNLEVDFFG-GEPLMNFNLVKKLVEYGD 170 Query: 206 D---SMGLSFSKRRITLSTSGFV--PNIARVGEE--IGVMLAISLH-AVSNDLRNILVPI 257 + G +F R TL+T+G + I E V+L+I +++D+R + Sbjct: 171 EREKEYGKNF---RWTLTTNGMLLNDEINEFLNEHMSNVVLSIDGRKKINDDMRPTI--- 224 Query: 258 NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 N K ++++ + + D D Sbjct: 225 NGKGSYDIIVPKFKKLIEGRGDKDYYIRGTFTNKNLDFGED 265 >gi|294783714|ref|ZP_06749038.1| Fe-S oxidoreductase [Fusobacterium sp. 1_1_41FAA] gi|294480592|gb|EFG28369.1| Fe-S oxidoreductase [Fusobacterium sp. 1_1_41FAA] Length = 284 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 85/235 (36%), Gaps = 34/235 (14%) Query: 124 CSLTCSFC---YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 C+L C FC T +L R E +E + + Sbjct: 28 CNLNCIFCECGATKKIQLER-----------------KRFKDMNEILEEISTVLKDIQPD 70 Query: 181 NIVMMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV- 237 I G GEP + D N+ K++ G +I L T+ + + EE+ Sbjct: 71 YITFSGSGEPTLSLDLGNISKAIKEDLKYQG------KICLITNSLLLADENLMEELEYI 124 Query: 238 -MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 ++ +L+ ++ D+ +V + + +E + + +I E +L+ INDS Sbjct: 125 DLIVPTLNTLTQDIFEKIVRPDYRTSVEEIRKGFINLNKSKYKGKIWIEIFILENINDSD 184 Query: 297 RDALNLIKILKGIPAKINLIPFNPWP----GCEYLCSDQKDIVTFSECIKRSGYS 347 ++ +++ LK + + I N + + I + ++ +G + Sbjct: 185 KNFVDIANFLKSENIRYDKIQLNTIDRVGAERDLKAISFEKISRAKKILEENGLN 239 >gi|167758792|ref|ZP_02430919.1| hypothetical protein CLOSCI_01134 [Clostridium scindens ATCC 35704] gi|167663532|gb|EDS07662.1| hypothetical protein CLOSCI_01134 [Clostridium scindens ATCC 35704] Length = 473 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 39/207 (18%), Positives = 75/207 (36%), Gaps = 20/207 (9%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 IE V + LC+ C+L C +C+ E + R+L+ Sbjct: 104 IEEVKKRKTVVKALCLHIAHDCNLACKYCFAEE---------GEYHGR----RALMSFEV 150 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 G + ++ ++ S R + G GEPL N+ VK ++ + + R T++T+ Sbjct: 151 GKKALDFLIANSGNRHNLEVDFFG-GEPLMNWQVVKDLVAYGREQEKIHDKHFRFTITTN 209 Query: 223 GFV--PNIARV--GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN 278 G + + E V+L++ ND + N K ++++ + N Sbjct: 210 GVLLNDEVQEFVNKEMDNVVLSLDGRKDVND--RMRPFRNGKGSYDLIVPKFQKLAKSRN 267 Query: 279 ARRITFEYVMLKGINDSPRDALNLIKI 305 R + D D L+ + Sbjct: 268 QERYYVRGTFTRDNLDFSNDILHFADL 294 >gi|256828649|ref|YP_003157377.1| nitrogenase cofactor biosynthesis protein NifB [Desulfomicrobium baculatum DSM 4028] gi|256577825|gb|ACU88961.1| nitrogenase cofactor biosynthesis protein NifB [Desulfomicrobium baculatum DSM 4028] Length = 418 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 37/243 (15%), Positives = 84/243 (34%), Gaps = 44/243 (18%) Query: 123 GCSLTCSFCYTGTQ--KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 GC++ C++C R IL P + +I+ Sbjct: 31 GCNIQCNYCNRKYDCVNESRPGVTSAIL------------PPDRAVEYLDEVLKKEPRIT 78 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF--VPNIARVGEEIGVM 238 + + G G+P+ +++ + LS++G ++ R+ E Sbjct: 79 VVGIAGPGDPMAEAKRTLETIERINAKY----PNMLYCLSSNGLALPEHVDRLAELGVTH 134 Query: 239 LAISLHAVSNDLRNILVPINR------------KYPLEMLIDACRHYPGLSNARRITFEY 286 + ++++AV ++ + R K LE +++ R + + Sbjct: 135 VTVTMNAVDPEIGAKIYSWVRVGKVVYRGVEGAKILLERQLESIR--LLKAKGITVKVNS 192 Query: 287 VMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEY---LCSDQKDIVTFSECIK 342 +++ G+ND + + K+ + A I NLIP +P + ++ I ++ Sbjct: 193 IIIPGVNDH--HLIEVAKVAASLGADIQNLIPLHPTADTPFAGVEEPTKELIHE----LR 246 Query: 343 RSG 345 G Sbjct: 247 AKG 249 >gi|323485627|ref|ZP_08090966.1| hypothetical protein HMPREF9474_02717 [Clostridium symbiosum WAL-14163] gi|323401038|gb|EGA93397.1| hypothetical protein HMPREF9474_02717 [Clostridium symbiosum WAL-14163] Length = 465 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 85/227 (37%), Gaps = 27/227 (11%) Query: 108 IPEKSRGT----LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163 + K R T LC+ C+L C +C+ E + R+L+ G Sbjct: 96 MDFKKRQTVVKALCLHIAHDCNLACRYCFAEE---------GEYHGR----RALMSYEVG 142 Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223 + ++ ++ S R+ + G GEPL N++ VK+ + L K R TL+T+G Sbjct: 143 KKALDFLIANSGARRNLEVDFFG-GEPLMNWEVVKQLVEYGRSQEELHNKKFRFTLTTNG 201 Query: 224 FV--PNIARVG--EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279 + I E V+L++ ND + N + ++++ + + Sbjct: 202 VLLNDEIMEFSNREMSNVVLSLDGRQDVND--RMRPFRNGRGSYDLIVPKFQKFAKERGD 259 Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 R + D D L+ + G K+++ P P Y Sbjct: 260 RDYFVRGTFTRNNLDFADDVLHFADL--GFE-KMSVEPVVASPEEPY 303 >gi|295100532|emb|CBK98077.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Faecalibacterium prausnitzii L2-6] Length = 483 Score = 58.0 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 71/195 (36%), Gaps = 20/195 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L CS+C+ + + R+L+ G ++ ++ S Sbjct: 100 ALCLHVAHTCNLNCSYCFASQGRYQGD-------------RALMSFEVGKRAMDFLIENS 146 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIARV 231 R+ + G GEPL NFD VKK ++ + + R T++T+G + I Sbjct: 147 GTRRNLEVDFFG-GEPLMNFDMVKKLVAYCREQEKIHNKNFRFTMTTNGMLIDDDVIDFC 205 Query: 232 GEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 +E V+L++ +D + + ++ + + + Sbjct: 206 NKECHNVVLSLDGRKEVHD--RFRKDYAGRGSYDAIVPKFQEFVKKRGDKNYYMRGTYTH 263 Query: 291 GINDSPRDALNLIKI 305 D D ++ + Sbjct: 264 YNTDFTNDIFHMADL 278 >gi|323691701|ref|ZP_08105962.1| radical SAM domain-containing protein [Clostridium symbiosum WAL-14673] gi|323504245|gb|EGB20046.1| radical SAM domain-containing protein [Clostridium symbiosum WAL-14673] Length = 465 Score = 58.0 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 85/227 (37%), Gaps = 27/227 (11%) Query: 108 IPEKSRGT----LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163 + K R T LC+ C+L C +C+ E + R+L+ G Sbjct: 96 MDFKKRQTVVKALCLHIAHDCNLACRYCFAEE---------GEYHGR----RALMSYEVG 142 Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223 + ++ ++ S R+ + G GEPL N++ VK+ + L K R TL+T+G Sbjct: 143 KKALDFLIANSGARRNLEVDFFG-GEPLMNWEVVKQLVEYGRSQEELHNKKFRFTLTTNG 201 Query: 224 FV--PNIARVG--EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279 + I E V+L++ ND + N + ++++ + + Sbjct: 202 VLLNDEIMEFSNREMSNVVLSLDGRQDVND--RMRPFRNGRGSYDLIVPKFQKFAKERGD 259 Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 R + D D L+ + G K+++ P P Y Sbjct: 260 RDYFVRGTFTRNNLDFADDVLHFADL--GFE-KMSVEPVVASPEEPY 303 >gi|187776896|ref|ZP_02993369.1| hypothetical protein CLOSPO_00435 [Clostridium sporogenes ATCC 15579] gi|187775555|gb|EDU39357.1| hypothetical protein CLOSPO_00435 [Clostridium sporogenes ATCC 15579] Length = 300 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 41/274 (14%), Positives = 92/274 (33%), Gaps = 53/274 (19%) Query: 107 YIPEKSRGTLCVSSQVGCSLT---------------CSFCYTGTQKLVRNLTAEEILLQV 151 + + R T C C C+FC T N A E + + Sbjct: 48 IMFFEERCTACGICVKRCPQKVITMKNNIPVVDEGKCNFCGKCTN-FCPN-NAREYVGKD 105 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 L ++ ++ + E + G GEP+ + D ++ + + Sbjct: 106 LTSQEIIKEIIKDEVFYEESGGG-------VTFSG-GEPMLHAD----FINGILEE--CN 151 Query: 212 FSKRRITLSTSGFVP--NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 T+ TSG+V +V +++ + L L +++N++ + + ++ Sbjct: 152 VRGIHTTIDTSGYVSWDKFEKVRDKVDLFL-YDLKSMNNEIHKKYTGVENTI-ILENLEL 209 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI-PAKINLIPFNPWPGCEYLC 328 Y I ++ +ND+ + IK + + ++NL+P++ +Y Sbjct: 210 LSKY-----GHNIYLRIPIINDVNDNNENIDETIKFISKLHLIQVNLLPYHKMGMDKYKR 264 Query: 329 ------------SDQKDIVTFSECIKRSGYSSPI 350 + + +E K++G I Sbjct: 265 LKMEYKLTGEEKPSDEKMNKIAEKFKKAGIKVKI 298 >gi|302671353|ref|YP_003831313.1| radical SAM domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302395826|gb|ADL34731.1| radical SAM domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 479 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 73/200 (36%), Gaps = 30/200 (15%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC++ C+L C +C+ E + R+L+ + G ++ ++ S Sbjct: 120 ALCLNIAHDCNLRCKYCFADE---------GEYHGR----RALMTEEVGKAALDFLIKNS 166 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR-----RITLSTSGFVPNIA 229 R+ + G GEPL N++ VKK + G S K R T++T+G + N Sbjct: 167 GNRRNLEVDFFG-GEPLMNWEVVKKIVE-----YGRSIEKEHNKNFRFTITTNGTLLNDE 220 Query: 230 RV----GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFE 285 + E ++L+I ND + + + ++ + + R Sbjct: 221 ILEYVNKEMGNIVLSIDGRKEVNDF--MRPRKGGQGCYDDIVPKFQKVAESRHQLRYFVR 278 Query: 286 YVMLKGINDSPRDALNLIKI 305 D D +L + Sbjct: 279 GTFTHNNLDFSEDVKHLADL 298 >gi|310658132|ref|YP_003935853.1| radical sam family protein [Clostridium sticklandii DSM 519] gi|308824910|emb|CBH20948.1| putative radical SAM family protein [Clostridium sticklandii] Length = 459 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 40/199 (20%), Positives = 78/199 (39%), Gaps = 28/199 (14%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 +C+ C+L C +C+ A+S++ G + +E +V S Sbjct: 92 AMCLHIAHDCNLKCKYCFASQGDFGG-------------AKSIMSFEVGKKALEYLVDNS 138 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSI---ASDSMGLSFSKRRITLSTSGFV--PNIA 229 RK + G GEPL NF+ VK+ + + G +F R T++T+G + I Sbjct: 139 GSRKNLEVDFFG-GEPLMNFEVVKQLVEYGNELAKEKGKNF---RFTITTNGVLLDDEII 194 Query: 230 RVGEEIGVMLAISL---HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286 E + +SL ++++D+R L N K ++++ + + Sbjct: 195 DYVNEHMHNVVLSLDGRKSINDDMRPTL---NDKGSYDIIVPKFQKLIEKRKDKYYYVRG 251 Query: 287 VMLKGINDSPRDALNLIKI 305 + D +D L+ + Sbjct: 252 TFTRDNMDFSKDVLHFKDL 270 >gi|238917316|ref|YP_002930833.1| hypothetical protein EUBELI_01391 [Eubacterium eligens ATCC 27750] gi|238872676|gb|ACR72386.1| Hypothetical protein EUBELI_01391 [Eubacterium eligens ATCC 27750] Length = 453 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 46/220 (20%), Positives = 76/220 (34%), Gaps = 29/220 (13%) Query: 98 GGPVEIETVYIPEKSR--------GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149 G + E +Y P LC+ C+L C +C+ E Sbjct: 69 AGQLFTEDIYEPYIDNFKDRPTVVKALCLHIAHDCNLACKYCFAEE---------GEYHG 119 Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209 + R+L+ G + ++ +V S RK + G GEP NF+ VK+ + Sbjct: 120 R----RALMSYEVGKKALDFLVANSGSRKNLEVDFFG-GEPTMNFEVVKQLVEYGRSIEE 174 Query: 210 LSFSKRRITLSTSGFVPNIARV----GEEIGVMLAISLHAVSNDL-RNILVPINRKYPLE 264 + K R TL+T+G + N + E ++L+I NDL R Y + Sbjct: 175 ANNKKFRFTLTTNGILLNDEILDFANKEMSNIVLSIDGRKEINDLMRPTRNNHGSSYDI- 233 Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 ++ + N D D L+L Sbjct: 234 -IMPKFKKVAESRNQMNYYVRGTFTHNNLDFSEDVLHLAD 272 >gi|166031166|ref|ZP_02233995.1| hypothetical protein DORFOR_00852 [Dorea formicigenerans ATCC 27755] gi|166029013|gb|EDR47770.1| hypothetical protein DORFOR_00852 [Dorea formicigenerans ATCC 27755] Length = 464 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 79/222 (35%), Gaps = 24/222 (10%) Query: 92 FPARCIGGPVEIETVYIPEKSRGT----LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147 + E E + K R T LC+ C+L C +C+ E Sbjct: 80 TEDGKLFTKDEFEYLVPIVKKRKTVVKALCLHIAHDCNLACRYCFAEE---------GEY 130 Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207 + R+L+ G + ++ ++ S R+ + G GEPL N+ VK ++ + Sbjct: 131 HGR----RALMSYEVGKKALDFLIANSGSRRNLEVDFFG-GEPLMNWQVVKDLVAYGREQ 185 Query: 208 MGLSFSKRRITLSTSGFV--PNIARV--GEEIGVMLAISLHAVSNDLRNILVPINRKYPL 263 L R T++T+G + I E V+L++ ND + N K Sbjct: 186 EKLHDKNFRFTVTTNGVLLNDEIQEFVNKEMDNVVLSLDGRKEINDK--MRPFRNGKGSY 243 Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++++ + N + + D D L+ + Sbjct: 244 DLIVPKFQKLAESRNQEKYYIRGTFTRNNLDFSNDILHFADL 285 >gi|296134437|ref|YP_003641684.1| Radical SAM domain protein [Thermincola sp. JR] gi|296033015|gb|ADG83783.1| Radical SAM domain protein [Thermincola potens JR] Length = 461 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 50/230 (21%), Positives = 85/230 (36%), Gaps = 22/230 (9%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 +LC+ C+L C +C+ GT E + L+ G I+ +V S Sbjct: 99 SLCLHVAHDCNLRCKYCFAGTGHF-----GGE--------KGLMPFEVGKAAIDFLVQSS 145 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF---VPNIARV 231 RK I G GEPL N D VK+ + + + + TL+T+ I + Sbjct: 146 QRRKHCEIDFFG-GEPLLNMDVVKQIVHYGREQGAKHDKEFKFTLTTNAVRLDAEIINYL 204 Query: 232 GE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 + +I V+L++ ND R L P K + + + + Sbjct: 205 NDNDIAVVLSLDGRPEVND-RMRLTP-AGKGSYHTITHKIKEMVQSRHNENYYVRGTFTR 262 Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSEC 340 D D L+L+ L G +++ P +Y ++ V F+E Sbjct: 263 FNLDFAADVLHLVDDL-GFK-HVSVEPVVAGAENDYAFREEDLPVLFAEY 310 >gi|114563644|ref|YP_751157.1| pyruvate formate lyase-activating enzyme 1 [Shewanella frigidimarina NCIMB 400] gi|114334937|gb|ABI72319.1| pyruvate formate-lyase activating enzyme [Shewanella frigidimarina NCIMB 400] Length = 245 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 40/250 (16%), Positives = 84/250 (33%), Gaps = 56/250 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + ++ +EI+ QV+ + P E G + S G Sbjct: 28 GCLMRCQYCHNRDTWDLDGGKE--VSVDEIMSQVISYQ------PFLEASGGGITASGGE 79 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 I + + K+ S G L T+GFV P I + + Sbjct: 80 AILQAQFVS---------ELFKACK----SQG-----VHTCLDTNGFVRKYEPVIDELLD 121 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++L + + + + L ++ L+ Y N + YV++ G Sbjct: 122 NTDLVL-LDIKQMDDAKHIELTKVSNHRTLQ-----FAQYLATRN-IKTWIRYVVVAGFT 174 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSE 339 + A+ L + +K + K+ L+P++P ++ + + + Sbjct: 175 EDVESAIALAEFIKPMSNVEKVELLPYHPLGEHKWQAFGETYTLADISPPSTEIMQRIQQ 234 Query: 340 CIKRSGYSSP 349 G ++ Sbjct: 235 VFVDRGINAT 244 >gi|323706427|ref|ZP_08117989.1| Radical SAM domain protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323534212|gb|EGB24001.1| Radical SAM domain protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 459 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 41/207 (19%), Positives = 77/207 (37%), Gaps = 21/207 (10%) Query: 102 EIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF 161 +IE V + +C++ C+L CS+C+ T R L+ Sbjct: 83 DIE-VSRKDSVIKAICLNVAHDCNLRCSYCFASTGDFKG-------------GRKLMPYE 128 Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221 G + I+ ++ S RKI + G GEPL NFD VKK + + + T++T Sbjct: 129 VGKKAIDFLIKNSGNRKIVEVDFFG-GEPLLNFDVVKKLVDYGREEAKKYGKTIKYTITT 187 Query: 222 SGFVPNIARVG----EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277 +G + + + V+L++ ND + + Y +++ +++ Sbjct: 188 NGVLLDEEKATYINENFSNVVLSLDGRKEINDAMRKRIDGSGSY--DVIFPKIKNFVLKR 245 Query: 278 NARRITFEYVMLKGINDSPRDALNLIK 304 + D D L+L Sbjct: 246 GNKEHYVRGTFTAKNLDFSEDVLHLAD 272 >gi|167040100|ref|YP_001663085.1| radical SAM domain-containing protein [Thermoanaerobacter sp. X514] gi|300914184|ref|ZP_07131500.1| Radical SAM domain protein [Thermoanaerobacter sp. X561] gi|307724580|ref|YP_003904331.1| Radical SAM domain-containing protein [Thermoanaerobacter sp. X513] gi|166854340|gb|ABY92749.1| Radical SAM domain protein [Thermoanaerobacter sp. X514] gi|300889119|gb|EFK84265.1| Radical SAM domain protein [Thermoanaerobacter sp. X561] gi|307581641|gb|ADN55040.1| Radical SAM domain protein [Thermoanaerobacter sp. X513] Length = 461 Score = 57.6 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 73/195 (37%), Gaps = 20/195 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 +C++ C+L C +C+ T + R L+ G + I+ ++ S Sbjct: 95 AMCLNVAHDCNLRCKYCFASTGDFKGS-------------RKLMDFETGKKAIDFLIKSS 141 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIARV 231 R+ + G GEPL NF+ VK+ + + + + T++T+ + I Sbjct: 142 GKRRNIEVDFFG-GEPLLNFEVVKRLVEYGKEKAKENKKVIKFTITTNAVLLDDEKIKYF 200 Query: 232 GEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 E V+L++ ND ++ + ++ + ++ + + + Sbjct: 201 NENFSNVVLSLDGRKEVND--SMRIRVDGSGSYDTIVPKIKKFVESRGKKEYYVRGTFTA 258 Query: 291 GINDSPRDALNLIKI 305 D D L++ + Sbjct: 259 KNLDFANDVLHIADL 273 >gi|304317007|ref|YP_003852152.1| radical SAM protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778509|gb|ADL69068.1| Radical SAM domain protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 454 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 86/235 (36%), Gaps = 25/235 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 +C++ C+L CS+C+ T R L+ G + I+ ++ S Sbjct: 95 AICLNVAHDCNLRCSYCFASTGDFKG-------------GRKLMSYEVGKKAIDFLIKNS 141 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG-- 232 RKI + G GEPL NF+ VKK + + T++T+G + + + Sbjct: 142 GNRKIVEVDFFG-GEPLLNFEVVKKIVEYGRQEAKKHGKTIKYTITTNGVLLDDEKASYI 200 Query: 233 --EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 V+L++ ND + + Y +++ +++ + Sbjct: 201 NENFSNVVLSLDGRKEINDGMRKRIDGSGSY--DVIAPKIKNFVSKRGNKEHYVRGTFTA 258 Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY--LCSDQKDIVTFSECIKR 343 D D L+L + GI +I++ P +Y + I+ + + Sbjct: 259 KNLDFTNDVLHLADM--GIK-EISVEPVVEKEDTDYSIKKEHMERILKEYDRLTE 310 >gi|121535846|ref|ZP_01667645.1| Radical SAM domain protein [Thermosinus carboxydivorans Nor1] gi|121305561|gb|EAX46504.1| Radical SAM domain protein [Thermosinus carboxydivorans Nor1] Length = 457 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 36/196 (18%), Positives = 71/196 (36%), Gaps = 22/196 (11%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQ--KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172 +LC+ C+L C +C+ GT R L +E+ Q + E ++ Sbjct: 95 SLCLHVAHDCNLRCRYCFAGTGDFGHDRGLMTKEVAEQAV---------------EFLIA 139 Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIAR 230 S R+ I G GEPL N + V+ ++ + ++TL+T+ + I Sbjct: 140 SSGPRRHCEIDFFG-GEPLLNMEVVRHTVDYVRRRAAETGKIFKLTLTTNAVLLDDAIIN 198 Query: 231 VGEEIGVMLAISLHAVSNDLRNILVPIN-RKYPLEMLIDACRHYPGLSNARRITFEYVML 289 E + L +SL ++ + + P + + ++ + N + Sbjct: 199 YLNEHNISLVLSLDG-RREVHDRMRPDALGRGSYDEVVANIKRAVASRNGQNYYVRGTFT 257 Query: 290 KGINDSPRDALNLIKI 305 D D L + + Sbjct: 258 AYNIDFAADVLAMADL 273 >gi|257438968|ref|ZP_05614723.1| radical SAM domain protein [Faecalibacterium prausnitzii A2-165] gi|257198553|gb|EEU96837.1| radical SAM domain protein [Faecalibacterium prausnitzii A2-165] Length = 487 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 79/221 (35%), Gaps = 24/221 (10%) Query: 93 PARCIGGPVEIETVYIPEKSRGT----LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 + + P E + K+R T LC+ C+L CS+C+ + E Sbjct: 78 ESGKLWSPDTYEDLAFDFKNRNTVVKALCLHVAHTCNLNCSYCFASQGRYQ-----GE-- 130 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 R+L+ G ++ ++ S R+ + G GEPL NFD VKK ++ + Sbjct: 131 ------RALMSFEVGKRAMDFLIENSGSRRNLEVDFFG-GEPLMNFDMVKKLVAYCREQE 183 Query: 209 GLSFSKRRITLSTSGFV---PNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLE 264 + R T++T+G + I +E V+L++ +D + Sbjct: 184 KIHNKNFRFTMTTNGMLIDDDVIDFCNKECHNVVLSLDGRKEVHD--RFRKDYAGHGSYD 241 Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 ++ + + + D D ++ + Sbjct: 242 TIVPKFQEFVKKRGDKGYYMRGTFTHYNTDFTNDIFHMADL 282 >gi|227500369|ref|ZP_03930431.1| [formate-C-acetyltransferase]-activating enzyme [Anaerococcus tetradius ATCC 35098] gi|227217432|gb|EEI82751.1| [formate-C-acetyltransferase]-activating enzyme [Anaerococcus tetradius ATCC 35098] Length = 239 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 34/214 (15%), Positives = 73/214 (34%), Gaps = 40/214 (18%) Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC L C FC+ T + R++T EEI+ + + + G Sbjct: 26 GCPLRCVFCHNPDTQSPNYGRDITIEEIVDRAKRMKPYYKNTGG---------------- 69 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF--VPNIARVGEEIGV 237 V + GEP+ + + + +T+ TSG + ++ + Sbjct: 70 ---VTISGGEPMNDGKFLVDLIDALHKEN------IHVTVDTSGIGDSKYYEEIAQKADL 120 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 L + + + + + + Y R+ +VM+ + D+ Sbjct: 121 FL-LDIKHYDPEKFERITKA------KQDLLVKFMYQISKTNTRVWIRHVMMPQVTDTRE 173 Query: 298 DALNLIKILKGIPA---KINLIPFNPWPGCEYLC 328 D L++ +K + KI ++P++ +Y Sbjct: 174 DMERLVEFIKPLKKNIDKIEILPYHTLGVEKYKK 207 >gi|164687526|ref|ZP_02211554.1| hypothetical protein CLOBAR_01167 [Clostridium bartlettii DSM 16795] gi|164603300|gb|EDQ96765.1| hypothetical protein CLOBAR_01167 [Clostridium bartlettii DSM 16795] Length = 449 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 39/204 (19%), Positives = 74/204 (36%), Gaps = 27/204 (13%) Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168 +K LC+ C+L C +C+ A+ ++ G I+ Sbjct: 81 RKKVVKALCLHVSHDCNLRCKYCFASQGDFGG-------------AKEIMNFEVGKAAID 127 Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI---ASDSMGLSFSKRRITLSTSGFV 225 ++ S R+ I G GEPL NF+ VK+ + + G + R T++T+G + Sbjct: 128 YLIANSGNRRNLEIDFFG-GEPLMNFEVVKQLVEYGRKVEKTRGKNI---RFTITTNGVL 183 Query: 226 ---PNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281 I + E + V+L++ ND N+ N K +++ + + Sbjct: 184 LDDEKIKYINENMHNVVLSLDGRKEVND--NMRPTANNKGSYDIIAPKFKKLVSERPKDK 241 Query: 282 ITF-EYVMLKGINDSPRDALNLIK 304 + + D D L+ Sbjct: 242 YYYIRGTFTRDNLDFSEDVLHFAN 265 >gi|282882974|ref|ZP_06291578.1| radical SAM domain protein [Peptoniphilus lacrimalis 315-B] gi|281297181|gb|EFA89673.1| radical SAM domain protein [Peptoniphilus lacrimalis 315-B] Length = 449 Score = 57.2 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 48/290 (16%), Positives = 102/290 (35%), Gaps = 39/290 (13%) Query: 45 RGIRDFQGMSDISQEVRHLLN---QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPV 101 + I DF+ ++ +L+ F ++ E +++ K+L+ Sbjct: 32 KIIDDFKDLTRT-----EILSKYRDEFPLVQLEEAYDEV------KFLVDEEMLFTEDAK 80 Query: 102 EIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF 161 ++ +Y P +C++ C+L C +C+ R L+ Sbjct: 81 YLKPMYNPANIIKAMCLNVAHDCNLRCKYCFASQGDFKG-------------KRLLMDLQ 127 Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221 G + ++ ++ S R+ + G GEPL NF+ VKK + R T++T Sbjct: 128 TGKDALDFLIKSSGYRRNLEVDFFG-GEPLMNFEVVKKLVEYGRIQEKKYNKHFRFTITT 186 Query: 222 SGFV---PNIARVGEEIG-VMLAISLH-AVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276 +G I + E + +L++ V++ +R + N K ++++ + Sbjct: 187 NGTYLTDDKIDFINENMDNCVLSLDGRKCVNDYMRPTI---NGKGSFDIIVPKFKKLISK 243 Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 + D D L++ K K ++ P Y Sbjct: 244 RGDKDYFIRGTFTNENLDFSED---LMEFYKQGFKKTSIEPVVTDEKEPY 290 >gi|218133214|ref|ZP_03462018.1| hypothetical protein BACPEC_01076 [Bacteroides pectinophilus ATCC 43243] gi|217992087|gb|EEC58091.1| hypothetical protein BACPEC_01076 [Bacteroides pectinophilus ATCC 43243] Length = 462 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 82/222 (36%), Gaps = 34/222 (15%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L C +C+ E + R+++ G + ++ +V S Sbjct: 104 ALCLHIAHDCNLACKYCFAEE---------GEYHGR----RAMMSYEVGRKALDFLVANS 150 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR-----RITLSTSGFV--PN 227 R+ + G GEP NFD VK+ + G S K R TL+T+G + Sbjct: 151 GSRRNLEVDFFG-GEPTMNFDVVKQLVE-----YGRSIEKEHNKNFRFTLTTNGVLLNDE 204 Query: 228 IARVG--EEIGVMLAISLHAVSNDL-RNILVPINRKYPLEMLIDACRHYPGLSNARRITF 284 I E V+L+I NDL R Y + ++ + + N Sbjct: 205 IMEFANKEMANVVLSIDGRKEINDLMRPTRNNHGSSYDI--IMPKFKKFAESRNQTNYYV 262 Query: 285 EYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 D +D L+L +G +I++ P P +Y Sbjct: 263 RGTFTHNNIDFSKDVLHLAD--EGFE-QISVEPVVAKPEDDY 301 >gi|317504869|ref|ZP_07962825.1| pyruvate formate-lyase activating enzyme [Prevotella salivae DSM 15606] gi|315664053|gb|EFV03764.1| pyruvate formate-lyase activating enzyme [Prevotella salivae DSM 15606] Length = 286 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 49/274 (17%), Positives = 97/274 (35%), Gaps = 48/274 (17%) Query: 91 RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEI 147 R +G IET + + Q GC + C FC+ T Q V+ +TA+E+ Sbjct: 39 RSSQGHVGYVHSIETFGSVDGPGIRYIIFLQ-GCPMRCLFCHNPDTWKQNKVKPMTADEL 97 Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207 L Q R+ G+ G I + G GE L D + + L A Sbjct: 98 LDQAERYRTYWGEKGG------------------ITISG-GEALLQIDFLIELLEKAHAR 138 Query: 208 M---GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLE 264 L S + T + F R+ + + + + + ++ L Sbjct: 139 QINTCLDTSAQPFTRNGLWFTK-FERLMKVTD-TVLLDIKHIRDEEHRKLTKFTNHN--- 193 Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWP 322 ++D R+ + + + +V++ GI D+ L L + +I+++P++ Sbjct: 194 -ILDCARYLSEI--QKPVWIRHVLIPGITDNDEYLHELAAFLNTLHNIERIDILPYHTLG 250 Query: 323 GCEY------------LCSDQKDIVTFSECIKRS 344 +Y Q+ I ++ ++ + Sbjct: 251 TYKYDELHLDYPLKGVEPPTQERIDNANKIMESA 284 >gi|262274659|ref|ZP_06052470.1| pyruvate formate-lyase activating enzyme [Grimontia hollisae CIP 101886] gi|262221222|gb|EEY72536.1| pyruvate formate-lyase activating enzyme [Grimontia hollisae CIP 101886] Length = 246 Score = 56.8 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 39/247 (15%), Positives = 85/247 (34%), Gaps = 52/247 (21%) Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC + C +C+ T R +T EEI+ +V+ R + G Sbjct: 29 GCLMRCKYCHNRDTWDLHDGREVTVEEIMKEVVTYRHFINASGGG--------------- 73 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN----IARVGEEI 235 V GE + + V+ A L T+G++ I V + Sbjct: 74 ---VTASGGEAMLQPEFVRDFFRAAKAE------GIHTCLDTNGYIRKHTDVIDEVLDAT 124 Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 ++ + L +++D+ LV ++ +D R+ ++ YV++ G D Sbjct: 125 D-LVMLDLKQLNDDIHKDLVGVSNH----RTLDFARYLHQR--GQKTWIRYVVVPGYTDD 177 Query: 296 PRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECI 341 A L + +K + K+ ++P++ ++ ++ + + Sbjct: 178 DESAHRLGEFIKDMDNIEKVEMLPYHQLGAHKWEALGLEYALKDVKPPKKETMERLKTLL 237 Query: 342 KRSGYSS 348 + G+ Sbjct: 238 EGYGHKV 244 >gi|260589634|ref|ZP_05855547.1| radical SAM domain protein [Blautia hansenii DSM 20583] gi|260539874|gb|EEX20443.1| radical SAM domain protein [Blautia hansenii DSM 20583] Length = 456 Score = 56.8 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 43/215 (20%), Positives = 75/215 (34%), Gaps = 26/215 (12%) Query: 95 RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLA 154 I E ETV LC+ C+L C +C+ E + Sbjct: 81 NAIEHFKERETVV------KALCLHIAHDCNLACRYCFAEE---------GEYHGR---- 121 Query: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSK 214 R+L+ G + ++ ++ S RK + G GEPL N+ VK ++ + + Sbjct: 122 RALMSYEVGKQALDFLIANSGNRKNLEVDFFG-GEPLMNWQVVKDLVAYGREQEKIHNKN 180 Query: 215 RRITLSTSGFV--PNIARVG--EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 R TL+T+G + I E V+L+I +D Y L ++ Sbjct: 181 FRFTLTTNGVLLDDEIMEFANKEMANVVLSIDGRKEVHDFMRPFRKGAGSYDL--VVPKF 238 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + + + + D D L+L + Sbjct: 239 QKFAKSRGEKSYYARGTFTRHNLDFSEDVLHLADL 273 >gi|331083066|ref|ZP_08332183.1| hypothetical protein HMPREF0992_01107 [Lachnospiraceae bacterium 6_1_63FAA] gi|330405068|gb|EGG84605.1| hypothetical protein HMPREF0992_01107 [Lachnospiraceae bacterium 6_1_63FAA] Length = 456 Score = 56.8 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 43/215 (20%), Positives = 75/215 (34%), Gaps = 26/215 (12%) Query: 95 RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLA 154 I E ETV LC+ C+L C +C+ E + Sbjct: 81 NAIEHFKERETVV------KALCLHIAHDCNLACRYCFAEE---------GEYHGR---- 121 Query: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSK 214 R+L+ G + ++ ++ S RK + G GEPL N+ VK ++ + + Sbjct: 122 RALMSYEVGKQALDFLIANSGNRKNLEVDFFG-GEPLMNWQVVKDLVAYGREQEKIHNKN 180 Query: 215 RRITLSTSGFV--PNIARVG--EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 R TL+T+G + I E V+L+I +D Y L ++ Sbjct: 181 FRFTLTTNGVLLDDEIMEFANKEMANVVLSIDGRKEVHDFMRPFRKGAGSYDL--VVPKF 238 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + + + + D D L+L + Sbjct: 239 QKFAKSRGEKSYYARGTFTRHNLDFSEDVLHLADL 273 >gi|20807642|ref|NP_622813.1| arylsulfatase regulator (Fe-S oxidoreductase) [Thermoanaerobacter tengcongensis MB4] gi|20516186|gb|AAM24417.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Thermoanaerobacter tengcongensis MB4] Length = 469 Score = 56.8 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 70/195 (35%), Gaps = 20/195 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 +C++ C+L C +C+ T R L+ G + I+ ++ S Sbjct: 95 AMCLNVAHDCNLRCKYCFASTGNFKG-------------GRKLMDFETGRKAIDFLIKSS 141 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIARV 231 R+ I G GEPL NF+ VK+ + + + T++T+ + I Sbjct: 142 GKRRNIEIDFFG-GEPLLNFEVVKQLVEYGKQKAKENKKNIKFTITTNAVLLDDEKIEYF 200 Query: 232 GEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 E V+L++ ND + + Y ++++ + + + Sbjct: 201 NENFSNVVLSLDGRKEVNDQMRVRADGSGTY--DVIVPKIQKFVKARGKKEYYVRGTFTA 258 Query: 291 GINDSPRDALNLIKI 305 D D L++ + Sbjct: 259 KNLDFVEDVLHIADL 273 >gi|169832343|ref|YP_001718325.1| radical SAM domain-containing protein [Candidatus Desulforudis audaxviator MP104C] gi|169639187|gb|ACA60693.1| Radical SAM domain protein [Candidatus Desulforudis audaxviator MP104C] Length = 456 Score = 56.8 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 80/219 (36%), Gaps = 24/219 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L C +C+ R T R L+ ++ ++ S Sbjct: 89 ALCLYVSHHCNLACRYCFARAG---RPDT----------VRKLMPSGVARRAVDLLISES 135 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVG 232 R+ I G GEPL NF V+ ++ A + + + T++T+G + P + R Sbjct: 136 GARRHVEIDFFG-GEPLLNFPVVRDTIRYARERGEAAGKRVGFTVTTNGLLLTPEVRRFL 194 Query: 233 EEIGVMLAISL-HAVSNDLRNILVP---INRKYPLEMLIDACRHYPGLSNARRITFEYVM 288 + V + +SL R P + + L + + R + +R + Sbjct: 195 LKNKVNVVLSLDGRPEAHDRWRRTPGGGGSHREVLPKIREYVREWEACRGSRGYYYVRGT 254 Query: 289 LKGIN-DSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 N D D L++ +G ++L P EY Sbjct: 255 FTRHNLDFAEDFRYLVE--QGFH-NVSLEPVVAPQDEEY 290 >gi|146296214|ref|YP_001179985.1| radical SAM domain-containing protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409790|gb|ABP66794.1| Radical SAM domain protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 453 Score = 56.4 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 39/195 (20%), Positives = 66/195 (33%), Gaps = 20/195 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C L C +C+ R L+ G + I+ ++ S Sbjct: 92 ALCLHVSHDCDLRCRYCFASAGSFK-------------QERRLMSFDVGKKAIDFLLKSS 138 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS---MGLSFSKRRITLSTSGFVPNIARV 231 RK + G GEPL NF VKK + A G S T +T+ I + Sbjct: 139 GSRKNLEVDFFG-GEPLLNFGIVKKIVEYARKEEKKYGKHISFTLTTNATALNDEIIEYL 197 Query: 232 GEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 E + V+L+ ND + + + +++ + N + Sbjct: 198 NENMENVVLSHDGRPEINDF--MRIDREGRGTYDVITQNILKFIQKRNGKTYYVRGTFTS 255 Query: 291 GINDSPRDALNLIKI 305 D +D L+L + Sbjct: 256 KNLDFSKDVLHLYSL 270 >gi|154505871|ref|ZP_02042609.1| hypothetical protein RUMGNA_03413 [Ruminococcus gnavus ATCC 29149] gi|153793889|gb|EDN76309.1| hypothetical protein RUMGNA_03413 [Ruminococcus gnavus ATCC 29149] Length = 473 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 37/195 (18%), Positives = 72/195 (36%), Gaps = 20/195 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L C +C+ E + R+L+ G + ++ +V S Sbjct: 107 ALCLHIAHDCNLACKYCFAEE---------GEYHGR----RALMSLEVGKKALDFLVANS 153 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARV- 231 R+ + G GEPL N+ VK ++ + + R TL+T+G + + Sbjct: 154 GKRRNLEVDFFG-GEPLMNWQVVKDLVAYGRELEKTNDKHFRFTLTTNGVLLNDEVQEFV 212 Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 E V+L++ ND + N K ++++ + N + + Sbjct: 213 NKEMDNVVLSLDGRKEVND--RMRPFRNGKGSYDLIVPKFQKLAESRNQEKYYIRGTFTR 270 Query: 291 GINDSPRDALNLIKI 305 D D L+ + Sbjct: 271 ENLDFSEDVLHFADL 285 >gi|297587385|ref|ZP_06946030.1| radical SAM domain protein [Finegoldia magna ATCC 53516] gi|297575366|gb|EFH94085.1| radical SAM domain protein [Finegoldia magna ATCC 53516] Length = 452 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 39/215 (18%), Positives = 79/215 (36%), Gaps = 26/215 (12%) Query: 98 GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157 + IE E +C+ C+L C +C+ + ++ Sbjct: 75 DDYLHIEDFKKREPVLKAMCLHVVHDCNLKCEYCFASQGDFGGH-------------KAY 121 Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI---ASDSMGLSFSK 214 + + G + ++ +V S RK + G GEPL +F+ VKK + +D G F Sbjct: 122 MTEEVGKKALKYLVDNSGSRKFLEVDFFG-GEPLMDFELVKKLVKYGNEIADEKGKKF-- 178 Query: 215 RRITLSTSGFVPNIARV----GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 R T++T+G + + ++ V+L++ ND N+ +N K ++++ Sbjct: 179 -RFTITTNGVLLDDDKIDFINKNMHNVVLSLDGRKSVND--NMRKTLNDKGSYDLIVPKF 235 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + + K D D + + Sbjct: 236 QKLIKGRKGKYYYVRGTFTKKNLDFSEDVKHFKDL 270 >gi|317056660|ref|YP_004105127.1| Radical SAM domain-containing protein [Ruminococcus albus 7] gi|315448929|gb|ADU22493.1| Radical SAM domain protein [Ruminococcus albus 7] Length = 457 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 49/254 (19%), Positives = 84/254 (33%), Gaps = 27/254 (10%) Query: 57 SQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTL 116 EV L++ + + E+I K L + +V P K + Sbjct: 44 PAEVIAKLSRSYPAEDIKECYEEIVSLYNDKILFSEDD---YEKYALASVASPVK---AM 97 Query: 117 CVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176 C+ C+L C +C+ T + R L+ I+ ++ S Sbjct: 98 CLHISHDCNLRCKYCFASTGDFG-------------VGRKLMDFETAKRAIDFLIEKSAD 144 Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARV--G 232 RK + G GEP NF V K++ A + R T +T+G + Sbjct: 145 RKFLEVDFFG-GEPSMNFGVVMKTVEYARSREKETGKTFRFTTTTNGMHLTDEMIDFINK 203 Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 E V+L+I ND + V + Y + + + A R + Sbjct: 204 EMYNVVLSIDGRKEVNDRVRVRVDGSGSY--DTITKNFKRLVDKRPADRDWYVRGTYTKY 261 Query: 293 N-DSPRDALNLIKI 305 N D D ++L + Sbjct: 262 NLDFSEDVMHLYDL 275 >gi|28897766|ref|NP_797371.1| pyruvate formate lyase-activating enzyme 1 [Vibrio parahaemolyticus RIMD 2210633] gi|153837337|ref|ZP_01990004.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus AQ3810] gi|260363808|ref|ZP_05776563.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus K5030] gi|260876932|ref|ZP_05889287.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus AN-5034] gi|260897926|ref|ZP_05906422.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus Peru-466] gi|260903461|ref|ZP_05911856.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus AQ4037] gi|28805979|dbj|BAC59255.1| pyruvate formate-lyase 1 activating enzyme [Vibrio parahaemolyticus RIMD 2210633] gi|149749368|gb|EDM60141.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus AQ3810] gi|308085486|gb|EFO35181.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus Peru-466] gi|308093910|gb|EFO43605.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus AN-5034] gi|308110360|gb|EFO47900.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus AQ4037] gi|308113908|gb|EFO51448.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus K5030] gi|328473257|gb|EGF44105.1| pyruvate formate lyase-activating enzyme 1 [Vibrio parahaemolyticus 10329] Length = 246 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 37/249 (14%), Positives = 83/249 (33%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T EEI+ + R + G G Sbjct: 29 GCLMRCKYCHNRDTWDTHDGKE--VTVEEIIAEAKSYRHFMNASGGGITCSG-------- 78 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN----IARVGE 233 GE + + V+ A+ + G+ L T+G++ I V + Sbjct: 79 ----------GEAMLQPEFVRDFFR-AAHAEGI-----HTCLDTNGYIRKHTEVIDEVLD 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 +++ H ++ + NR+ +D R+ + ++ YV++ G Sbjct: 123 ATDLVMLDIKHMKDEIHQDFIGVSNRR-----TLDFARYLHKI--GQKTWIRYVVVPGYT 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSE 339 D P A L + +K + K+ L+P++ ++ ++ + Sbjct: 176 DDPEAAHMLGEFIKDMDNIEKVELLPYHKLGAHKWEALGLEYPLEGVNPPSKETMDEIQS 235 Query: 340 CIKRSGYSS 348 + + + Sbjct: 236 ILSQYHSNV 244 >gi|256752583|ref|ZP_05493437.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|256748521|gb|EEU61571.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus CCSD1] Length = 461 Score = 56.1 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 31/195 (15%), Positives = 73/195 (37%), Gaps = 20/195 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 +C++ C+L C +C+ T + R L+ G + I+ ++ S Sbjct: 95 AMCLNVAHDCNLRCKYCFASTGDFKGS-------------RKLMDFETGKKAIDFLIKSS 141 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIARV 231 R+ + G GEPL NF+ VK+ + + + + T++T+ + I Sbjct: 142 GKRRNIEVDFFG-GEPLLNFEVVKRLVEYGKEKAKENKKVIKFTITTNAVLLDDEKIKYF 200 Query: 232 GEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 + V+L++ ND ++ + ++ + ++ + + + Sbjct: 201 NKNFSNVVLSLDGRKEVND--SMRIRVDGSGSYDTIVPKIKKFVESRGKKEYYVRGTFTA 258 Query: 291 GINDSPRDALNLIKI 305 D D L++ + Sbjct: 259 KNLDFANDVLHIADL 273 >gi|78187319|ref|YP_375362.1| Elongator protein 3/MiaB/NifB [Chlorobium luteolum DSM 273] gi|78167221|gb|ABB24319.1| Elongator protein 3/MiaB/NifB [Chlorobium luteolum DSM 273] Length = 312 Score = 56.1 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 79/227 (34%), Gaps = 30/227 (13%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+ C +C R P +E G +I I Sbjct: 27 CTWNCIYC---QLGRTR----------AYTLERKEFYPPEDILLEIQEALHSGARIDWIT 73 Query: 184 MMGMGEPLC--NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 +G GE + + + +D + + T+G + ++ V E+ A+ Sbjct: 74 FVGSGETMLYQGIGRLIDEVKKMTD--------IPVAVITNGSLFSLPEVRSELLHADAV 125 Query: 242 --SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 SL+A S +L + + + ++ R + + R+ E ++L G+NDS Sbjct: 126 LPSLNAGSEELHQRISRPAPGFTFSLHLEGLRQF-RREYSGRLWVEVMLLGGVNDSDEAL 184 Query: 300 LNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKR 343 ++ L+ I + +IP P + L D++ I + + Sbjct: 185 QDIASALRSINPDMVHL-VIPTRPSTEKDVLLPDEERIERAAAILAE 230 >gi|160945445|ref|ZP_02092671.1| hypothetical protein FAEPRAM212_02968 [Faecalibacterium prausnitzii M21/2] gi|158443176|gb|EDP20181.1| hypothetical protein FAEPRAM212_02968 [Faecalibacterium prausnitzii M21/2] Length = 487 Score = 56.1 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 39/204 (19%), Positives = 76/204 (37%), Gaps = 24/204 (11%) Query: 110 EKSRGT----LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCE 165 K+R T LC+ C+L+CS+C+ + + R+L+ G Sbjct: 95 FKNRNTVVKALCLHVAHSCNLSCSYCFASQGRYHGD-------------RALMSFEVGKR 141 Query: 166 DIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225 ++ ++ S R+ + G GEPL NFD VKK ++ + + R T++T+G + Sbjct: 142 AMDFLIENSGTRRNLEVDFFG-GEPLMNFDMVKKLVAYCREQEKIHNKNFRFTMTTNGVL 200 Query: 226 ---PNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281 I +E V+L++ ND V + ++ + + + Sbjct: 201 IDDDVIDFCNKECHNVVLSLDGRKEVND--RFRVDCAGNGSYDRIVPKFQEFVKKRGDKN 258 Query: 282 ITFEYVMLKGINDSPRDALNLIKI 305 D D ++ + Sbjct: 259 YYMRGTYTHFNTDFTNDIFHMADL 282 >gi|160934251|ref|ZP_02081638.1| hypothetical protein CLOLEP_03122 [Clostridium leptum DSM 753] gi|156866924|gb|EDO60296.1| hypothetical protein CLOLEP_03122 [Clostridium leptum DSM 753] Length = 458 Score = 56.1 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 87/233 (37%), Gaps = 29/233 (12%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKL--VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172 +C++ C+L C +C+ R L EI G + ++ ++ Sbjct: 99 AMCLNVAHDCNLRCEYCFAAKGDFGGERMLMPFEI---------------GKKAVDFLLE 143 Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV- 231 S R + G GEPL NFD VK+ +S A R T++T+G + ++ Sbjct: 144 KSGTRHNLEMDFFG-GEPLMNFDVVKQVVSYARSKEKEYNKNFRFTITTNGLLLTDDKIE 202 Query: 232 ---GEEIGVMLAISLH-AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 E +L++ V++ LR + N K + ++ + + Sbjct: 203 FINREMSNCVLSLDGRKEVNDRLRIKI---NGKGCYDQIVPQYQKLVAGRGDKDYYARGT 259 Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSEC 340 K D +D L++ + G ++++ P P +Y ++ F E Sbjct: 260 FTKYNLDFTQDVLHMADL--GFD-QVSVEPVVSDPMLDYSIKEEDLPRVFQEY 309 >gi|331090634|ref|ZP_08339485.1| hypothetical protein HMPREF9477_00128 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401074|gb|EGG80669.1| hypothetical protein HMPREF9477_00128 [Lachnospiraceae bacterium 2_1_46FAA] Length = 467 Score = 56.1 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 74/195 (37%), Gaps = 20/195 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L C +C+ E + R+L+ G + ++ ++ S Sbjct: 107 ALCIHIAHDCNLACKYCFAEE---------GEYHGR----RALMSYEVGKKALDFLIANS 153 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARV- 231 R+ + G GEPL N+ VK ++ + + R TL+T+G + + Sbjct: 154 GNRRNLEVDFFG-GEPLMNWQVVKDLVAYGREQEKIHNKNFRFTLTTNGVLLNDEVQEFV 212 Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 E V+L++ ND + N K ++++ + N ++ + Sbjct: 213 NKEMDNVVLSLDGRKEVNDK--MRPFRNGKGSYDLIVPKFQKLADSRNQQKYYIRGTFTR 270 Query: 291 GINDSPRDALNLIKI 305 D +D L+ + Sbjct: 271 DNLDFSKDVLHFADL 285 >gi|326390121|ref|ZP_08211682.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325993769|gb|EGD52200.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 461 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 72/195 (36%), Gaps = 20/195 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 +C++ C+L C +C+ T + R L+ G + I+ ++ S Sbjct: 95 AMCLNVAHDCNLRCKYCFASTGDFKGS-------------RKLMDFETGKKAIDFLIKSS 141 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIARV 231 R+ + G GEPL NF+ VK+ + + + T++T+ + I Sbjct: 142 GKRQNIEVDFFG-GEPLLNFEVVKQLVEYGKQKAKENKKTIKFTITTNAVLLDDEKIKYF 200 Query: 232 GEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 E V+L++ ND N+ + ++ + ++ + + + Sbjct: 201 NENFSNVVLSLDGRKEVND--NMRIRVDGSGTYDTIVPKIKKFVESRGKKEYYVRGTFTA 258 Query: 291 GINDSPRDALNLIKI 305 D D L++ + Sbjct: 259 KNLDFANDVLHIADL 273 >gi|227486366|ref|ZP_03916682.1| [formate-C-acetyltransferase]-activating enzyme [Anaerococcus lactolyticus ATCC 51172] gi|227235547|gb|EEI85562.1| [formate-C-acetyltransferase]-activating enzyme [Anaerococcus lactolyticus ATCC 51172] Length = 239 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 80/229 (34%), Gaps = 47/229 (20%) Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC L C FC+ T + R++T EEI+ + L + + G Sbjct: 26 GCPLRCVFCHNPDTQSLDYGRDVTVEEIVKRALRMKPYFKNGGG---------------- 69 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF--VPNIARVGEEIGV 237 V + GEPL + V +++ + + TSG + E + Sbjct: 70 ---VTLSGGEPLASGAFVLETIRALHKE------AIHVAVDTSGVGDEKYYDDIAREADL 120 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 +L + + + N + L +++ R+ +VM+ + D+ Sbjct: 121 IL-LDIKHYDPYFFYEITK-NYQDKLIKFMESI-----KKTDTRVWIRHVMMPFVTDTKE 173 Query: 298 DALNLIKILKGIPA---KINLIPFNPWP-------GCEYLCSDQKDIVT 336 D L+ ++ I A KI ++P++ G Y + + + Sbjct: 174 DMDGLVDFIRPIKANIDKIEILPYHKLGVCKYADLGKPYRIKNMEAMDK 222 >gi|237739305|ref|ZP_04569786.1| Fe-S oxidoreductase [Fusobacterium sp. 2_1_31] gi|229422913|gb|EEO37960.1| Fe-S oxidoreductase [Fusobacterium sp. 2_1_31] Length = 284 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 85/234 (36%), Gaps = 34/234 (14%) Query: 124 CSLTCSFC---YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 C+L C FC T +L R E +E + K Sbjct: 28 CNLNCIFCECGATKKIQLER-----------------KRFKDMNEILEEISAVLKDIKPD 70 Query: 181 NIVMMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV- 237 I G GEP + D N+ K++ G +I L T+ + + +E+ Sbjct: 71 YITFSGSGEPTLSLDLGNISKAIKEDLKYEG------KICLITNSLLLADENLMKELEYI 124 Query: 238 -MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 ++ +L+ ++ D+ +V + + +E + + + +I E +L+ +NDS Sbjct: 125 DLIVPTLNTLTQDIFEKIVRPDYRTSVEEIRKGFINLNKSNYKGKIWIEIFILENVNDSD 184 Query: 297 RDALNLIKILKGIPAKINLIPFNPWP----GCEYLCSDQKDIVTFSECIKRSGY 346 ++ +++ LK + + I N + + I + ++ +G Sbjct: 185 KNFVDIANFLKSENIRYDKIQLNTIDRVGAERDLKAISFEKISRAKKILEENGL 238 >gi|170761428|ref|YP_001788504.1| glycyl-radical enzyme activating family protein [Clostridium botulinum A3 str. Loch Maree] gi|169408417|gb|ACA56828.1| glycyl-radical enzyme activating family protein [Clostridium botulinum A3 str. Loch Maree] Length = 300 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 41/274 (14%), Positives = 92/274 (33%), Gaps = 53/274 (19%) Query: 107 YIPEKSRGTLCVSSQVGCSLT---------------CSFCYTGTQKLVRNLTAEEILLQV 151 + + R T C C C+FC T N + E + + Sbjct: 48 IMFFEERCTACGICVKRCPQKVITMKNNIPVVDEGKCNFCGKCTN-FCPN-SVREYVGKD 105 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 L ++ ++ + E + G GEP+ + D ++ + Sbjct: 106 LTSQEIIKEIIKDEVFYEQSGGG-------VTFSG-GEPMLHAD----FINGILEE--CK 151 Query: 212 FSKRRITLSTSGFVP--NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 T+ TSG+V +V +++ + L L +++N++ + + ++ Sbjct: 152 VRGIHTTIDTSGYVSWDKFEKVRDKVDLFL-YDLKSMNNEIHKKYTGVENTI-ILENLEL 209 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI-PAKINLIPFNPWPGCEYLC 328 Y I ++K +ND+ + IK + + ++NL+P++ +Y Sbjct: 210 LSKY-----GHNIYLRIPIIKDVNDNNENIDETIKFISKLHLIQVNLLPYHKMGMDKYKR 264 Query: 329 ------------SDQKDIVTFSECIKRSGYSSPI 350 + + +E K++G I Sbjct: 265 LKMEYKLTGEEKPSDEKMNEIAEKFKQAGIKVKI 298 >gi|167037434|ref|YP_001665012.1| radical SAM domain-containing protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115847|ref|YP_004186006.1| Radical SAM domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856268|gb|ABY94676.1| Radical SAM domain protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928938|gb|ADV79623.1| Radical SAM domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 461 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 31/195 (15%), Positives = 73/195 (37%), Gaps = 20/195 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 +C++ C+L C +C+ T + R L+ G + I+ ++ S Sbjct: 95 AMCLNVAHDCNLRCKYCFASTGDFKGS-------------RKLMDFETGKKAIDFLIKSS 141 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIARV 231 R+ + G GEPL NF+ VK+ + + + + T++T+ + I Sbjct: 142 GKRRNIEVDFFG-GEPLLNFEVVKQLVEYGKEKAKENKKVIKFTITTNAVLLDDEKIKYF 200 Query: 232 GEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 + V+L++ ND ++ + ++ + ++ + + + Sbjct: 201 NKNFSNVVLSLDGRKEVND--SMRIRVDSSGSYDTIVPKIKKFVESRGKKEYYVRGTFTA 258 Query: 291 GINDSPRDALNLIKI 305 D D L++ + Sbjct: 259 KNLDFANDVLHIADL 273 >gi|291542691|emb|CBL15801.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Ruminococcus bromii L2-63] Length = 457 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 39/196 (19%), Positives = 72/196 (36%), Gaps = 22/196 (11%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L C +C+ K E R+L+ G I+ ++ S Sbjct: 100 ALCLHIAHTCNLNCEYCFASQGKYH-----GE--------RALMSFEVGKRAIDFLIENS 146 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVG 232 R + G GEPL NFD VK+ ++ A R TL+T+G + ++ Sbjct: 147 GSRVNLEVDFFG-GEPLMNFDVVKQIVAYARSIEKEHNKNFRFTLTTNGMLVDDDVIEFA 205 Query: 233 --EEIGVMLAISLHAVS-NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 E V+L++ + LR +N K ++++ + + + Sbjct: 206 NKECHNVVLSLDGRKEVHDHLRK---TVNGKGSYDIIVPKFQEFVKKRGNKDYYVRGTYT 262 Query: 290 KGINDSPRDALNLIKI 305 D D ++ + Sbjct: 263 HNNTDFTNDIFHMADL 278 >gi|153835535|ref|ZP_01988202.1| pyruvate formate-lyase 1-activating enzyme [Vibrio harveyi HY01] gi|148867892|gb|EDL67111.1| pyruvate formate-lyase 1-activating enzyme [Vibrio harveyi HY01] Length = 246 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 35/249 (14%), Positives = 86/249 (34%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T EEI+ + R + G G Sbjct: 29 GCLMRCKYCHNRDTWDTHDGKE--VTVEEIIAEAKTYRHFMNASGGGITCSG-------- 78 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN----IARVGE 233 GE + + V+ A+ + G+ L T+G++ I V + Sbjct: 79 ----------GEAMLQPEFVRDFFR-AAQAEGI-----HTCLDTNGYIRKHTDVIDEVLD 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L + +++ + ++ + ++D R+ + ++ YV++ G Sbjct: 123 ATD-LVMLDLKHMKDEIHQEFIGVSNR----RVLDFARYLHKI--GQKTWIRYVVVPGYT 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSE 339 D P A L + +K + K+ L+P++ ++ ++ + Sbjct: 176 DEPEAAHMLGEFIKDMDNIEKVELLPYHKLGAHKWEALGVEYPLDGVNPPSKETMDEIQS 235 Query: 340 CIKRSGYSS 348 + + + Sbjct: 236 ILSQYHSNV 244 >gi|225019137|ref|ZP_03708329.1| hypothetical protein CLOSTMETH_03089 [Clostridium methylpentosum DSM 5476] gi|224948110|gb|EEG29319.1| hypothetical protein CLOSTMETH_03089 [Clostridium methylpentosum DSM 5476] Length = 469 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 51/251 (20%), Positives = 95/251 (37%), Gaps = 28/251 (11%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 +C+ C+L C++C+ T R L+ G I+ ++ S Sbjct: 107 AMCLHVAHDCNLRCNYCFASTGDFG-------------HGRKLMTAETGKHAIDFLLEHS 153 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV--- 231 R + G GEPL NFD VK+ + A R T++T+G + + A++ Sbjct: 154 GDRHNLELDFFG-GEPLMNFDVVKQVVEYARSKEKEYNKNFRFTITTNGMLLDDAKIDYI 212 Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 E V+L++ ND V + Y + +++ R G + K Sbjct: 213 NKEMSNVVLSLDGRKQVNDRMRPRVDGSGSY--DKIVNRYRQLVGSRGDKDYYVRGTFTK 270 Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK--DIVTFSECIKRSGYSS 348 D +D L++ + G ++++ P P +Y ++Q I E + + + Sbjct: 271 YNLDFSKDVLHINDL--GFD-QLSVEPVVAKPEEDYALTEQDLPAIFNEYEHLAKEIIN- 326 Query: 349 PIRTPRGLDIL 359 R +G I Sbjct: 327 --RKKKGSGIN 335 >gi|289811062|ref|ZP_06541691.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 56 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 4/45 (8%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVR 45 +N K +L+ + R+++ E +G R Q+ KW+Y Sbjct: 16 LNNETKINLLDLNRQQMREFFKNLG----EKPFRADQVMKWMYHY 56 >gi|312898867|ref|ZP_07758255.1| radical SAM domain protein [Megasphaera micronuciformis F0359] gi|310620029|gb|EFQ03601.1| radical SAM domain protein [Megasphaera micronuciformis F0359] Length = 466 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 71/193 (36%), Gaps = 14/193 (7%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 +LC++ C+L C +C+ N R L+ I+ ++ S Sbjct: 99 SLCLNIAHDCNLRCKYCFASQGDYDTNK------------RELMSFDVAKRAIDLLIESS 146 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234 G++ V GEPL NF VK+++ L +++L+T+G + + ++ Sbjct: 147 AGKRQHCEVDFFGGEPLMNFGVVKQTIEYIRKQEKLHNKVFKLSLTTNGLLLDEEKITYL 206 Query: 235 IGVMLAISLH-AVSNDLRNILVPINRKY-PLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 +++ L D+ N + P + + ++ +H N K Sbjct: 207 TDNHISLILSLDGREDVHNRMRPDAGGHGSYKRIVKNLQHAVSGRNGEEYYVRGTYTKYN 266 Query: 293 NDSPRDALNLIKI 305 D D ++ + Sbjct: 267 LDFTADVEHMADL 279 >gi|225387254|ref|ZP_03757018.1| hypothetical protein CLOSTASPAR_01006 [Clostridium asparagiforme DSM 15981] gi|225046646|gb|EEG56892.1| hypothetical protein CLOSTASPAR_01006 [Clostridium asparagiforme DSM 15981] Length = 466 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 43/206 (20%), Positives = 78/206 (37%), Gaps = 24/206 (11%) Query: 108 IPEKSRGT----LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163 + K R T LC+ C+L C +C+ E + R+L+ G Sbjct: 96 MDFKRRKTVVKALCLHIAHDCNLACKYCFAEE---------GEYHGR----RALMSYEVG 142 Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223 + ++ ++ S R+ + G GEPL N+D VK+ + K R TL+T+G Sbjct: 143 KKALDFLIANSGSREHLEVDFFG-GEPLMNWDVVKRLVEYGRSKEAEFHKKFRFTLTTNG 201 Query: 224 FVPNIARV----GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279 + N + E V+L++ ND + N K E+++ + + L + Sbjct: 202 VLLNDEVMEFCNREMSNVVLSLDGRPEVNDK--MRPFRNGKGSYELIVPKFQKFAELRDQ 259 Query: 280 RRITFEYVMLKGINDSPRDALNLIKI 305 + D D L+ + Sbjct: 260 NNYYVRGTFTRHNLDFAADVLHYADL 285 >gi|322807498|emb|CBZ05073.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum H04402 065] Length = 300 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 43/274 (15%), Positives = 94/274 (34%), Gaps = 53/274 (19%) Query: 107 YIPEKSRGTLCVSSQVGCSLT---------------CSFCYTGTQKLVRNLTAEEILLQV 151 + + R T C C C+FC T N A E + + Sbjct: 48 IMFFEERCTACGICVKRCPQKVITMKNNIPMVDEGKCNFCGKCTN-FCPN-NAREYVGKD 105 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 L ++ ++ + E + G GEP+ + D ++ + Sbjct: 106 LTSQEIIKEIIKDEVFYEQSGGG-------VTFSG-GEPMLHAD----FINGILEE--CK 151 Query: 212 FSKRRITLSTSGFVP--NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 F T+ TSG+V +V +++ + L L +++N++ + + ++ Sbjct: 152 FRGIHTTIDTSGYVSWDKFEKVRDKVDLFL-YDLKSMNNEIHKKYTGVENTI-ILENLEL 209 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI-PAKINLIPFNPWPGCEYLC 328 Y I ++K +ND+ ++ IK + + ++NL+P++ +Y Sbjct: 210 LSKY-----GHNIYLRIPIIKDVNDNNKNIDETIKFISKLHLIQVNLLPYHKMGMDKYKR 264 Query: 329 ------------SDQKDIVTFSECIKRSGYSSPI 350 + + +E K++G I Sbjct: 265 LKMEYKLTGEEKPSDEKMNEIAEKFKQAGIKVKI 298 >gi|237796639|ref|YP_002864191.1| glycyl-radical enzyme activating family protein [Clostridium botulinum Ba4 str. 657] gi|229263902|gb|ACQ54935.1| glycyl-radical enzyme activating family protein [Clostridium botulinum Ba4 str. 657] Length = 300 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 42/274 (15%), Positives = 92/274 (33%), Gaps = 53/274 (19%) Query: 107 YIPEKSRGTLCVSSQVGCSLT---------------CSFCYTGTQKLVRNLTAEEILLQV 151 + + R T C C C+FC T N A E + + Sbjct: 48 IMFFEERCTACGICVKRCPQKVITMKNNIPVVDEGKCNFCGKCTN-FCPN-NAREYVGKD 105 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 L ++ ++ + E + G GEP+ + D ++ + Sbjct: 106 LTSQEIIKEIIKDEVFYEQSGGG-------VTFSG-GEPMLHAD----FINGILEE--CK 151 Query: 212 FSKRRITLSTSGFVP--NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 T+ TSG+V +V +++ + L L +++N++ + + ++ Sbjct: 152 VRGIHTTIDTSGYVSWDKFEKVRDKVDLFL-YDLKSMNNEIHKKYTGVENTI-ILENLEL 209 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI-PAKINLIPFNPWPGCEYLC 328 Y I ++K +ND+ + IK + + ++NL+P++ +Y Sbjct: 210 LSKY-----GHNIYLRIPIIKDVNDNNENIDETIKFISKLHLIQVNLLPYHKMGMDKYKR 264 Query: 329 ------------SDQKDIVTFSECIKRSGYSSPI 350 + + +E K++G I Sbjct: 265 LKMEYKLTGEEKPSDEKMNEIAEKFKQAGIKVKI 298 >gi|254303597|ref|ZP_04970955.1| iron-sulfur (Fe-S) dehydrogenase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323789|gb|EDK89039.1| iron-sulfur (Fe-S) dehydrogenase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 284 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 41/237 (17%), Positives = 82/237 (34%), Gaps = 38/237 (16%) Query: 124 CSLTCSFC---YTGTQKLVRN--LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 C+L C FC T +L R EIL ++ + Sbjct: 28 CNLNCIFCECGATKKIQLERQRFKDMNEILNEIQSVLKDIKPDY---------------- 71 Query: 179 ISNIVMMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236 I G GEP + D N+ K++ G +I L T+ + +V +E+ Sbjct: 72 ---ITFSGSGEPTLSLDLGNISKAIKKDLKYKG------KICLITNSLLLANEQVTKELK 122 Query: 237 V--MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 ++ +L+ + D+ +V + + ++ + + + +I E +L+ IND Sbjct: 123 YIDLIVPTLNTLKQDIFEKIVRPDYRTSVDEIKKGFINLNNSNYKGKIWIEIFILENIND 182 Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWP----GCEYLCSDQKDIVTFSECIKRSGYS 347 S + + + L K + I N + I+ ++ +G Sbjct: 183 SEENFIEIANFLNSENIKYDKIQLNTIDRVGAERDLKAISFDKILKAKRILEENGLH 239 >gi|269960975|ref|ZP_06175344.1| pyruvate formate-lyase 1 activating enzyme [Vibrio harveyi 1DA3] gi|269834194|gb|EEZ88284.1| pyruvate formate-lyase 1 activating enzyme [Vibrio harveyi 1DA3] Length = 246 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 37/249 (14%), Positives = 84/249 (33%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T EEI+ + R + G Sbjct: 29 GCLMRCKYCHNRDTWDTHDGKE--VTVEEIIAEAKTYRHFMNASGGG------------- 73 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN----IARVGE 233 V GE + + V+ A+ + G+ L T+G++ I V + Sbjct: 74 -----VTCSGGEAMLQPEFVRDFFR-AAQAEGI-----HTCLDTNGYIRKHTDVIDEVLD 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 +++ H ++ + NR+ ++D R+ + ++ YV++ G Sbjct: 123 ATDLVMLDLKHMKDEIHQDFIGVSNRR-----VLDFARYLHKI--GQKTWIRYVVVPGYT 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSE 339 D P A L + +K + K+ L+P++ ++ ++ + Sbjct: 176 DEPEAAHMLGEFIKDMDNIEKVELLPYHKLGAHKWEALGLEYPLDGVNPPSKETMDEIQS 235 Query: 340 CIKRSGYSS 348 + + + Sbjct: 236 ILSQYHSNV 244 >gi|126700364|ref|YP_001089261.1| putative radical SAM family protein [Clostridium difficile 630] gi|115251801|emb|CAJ69636.1| putative radical SAM-family protein [Clostridium difficile] Length = 459 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 75/199 (37%), Gaps = 27/199 (13%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC++ C+L C +C+ E + L+ G I+ ++ S Sbjct: 95 ALCLNVAHDCNLKCKYCFAAQGDF-----GGE--------KELMSFEVGKAAIDYLIANS 141 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSL---SIASDSMGLSFSKRRITLSTSGFV---PNI 228 RK I G GEPL NF+ VK+ + + R T++T+G + I Sbjct: 142 GSRKNLEIDFFG-GEPLMNFEVVKQLVDYGRSVEKDYNKNI---RFTITTNGVLLNDEII 197 Query: 229 ARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF-EY 286 + E + V+L++ ND N+ +N K ++ + + + + + Sbjct: 198 DYINENMHNVVLSLDGRKEVND--NMRPTLNDKGSYDITLPRFKKLVEKRSKDKYYYIRG 255 Query: 287 VMLKGINDSPRDALNLIKI 305 + D +D ++ + Sbjct: 256 TFTRDNLDFSKDVMHFADL 274 >gi|254229008|ref|ZP_04922429.1| pyruvate formate-lyase 1-activating enzyme [Vibrio sp. Ex25] gi|262394749|ref|YP_003286603.1| pyruvate formate-lyase activating enzyme [Vibrio sp. Ex25] gi|151938476|gb|EDN57313.1| pyruvate formate-lyase 1-activating enzyme [Vibrio sp. Ex25] gi|262338343|gb|ACY52138.1| pyruvate formate-lyase activating enzyme [Vibrio sp. Ex25] Length = 246 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 35/249 (14%), Positives = 82/249 (32%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T EEI+ + R + G Sbjct: 29 GCLMRCKYCHNRDTWDTHDGKE--VTVEEIISEAKSYRHFMNASGGG------------- 73 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN----IARVGE 233 V GE + + V+ A L T+G+V I V + Sbjct: 74 -----VTCSGGEAMLQPEFVRDFFRAAKAE------GIHTCLDTNGYVRKHTDVIDEVLD 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + + + +++ L+ ++ + +D R+ + ++ YV++ G Sbjct: 123 ATD-LVMLDIKHMKDEVHQDLIGVSNR----RTLDFARYLQKI--GKKTWIRYVVVPGYT 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSE 339 D P A L + +K + K+ L+P++ ++ ++ + Sbjct: 176 DDPEAAHMLGEFIKDMDNIEKVELLPYHKLGAHKWEALGLEYPLEGVNPPPKETMDEIQS 235 Query: 340 CIKRSGYSS 348 + + + Sbjct: 236 ILAQYNDNV 244 >gi|307130799|ref|YP_003882815.1| pyruvate formate lyase activating enzyme 1 [Dickeya dadantii 3937] gi|306528328|gb|ADM98258.1| pyruvate formate lyase activating enzyme 1 [Dickeya dadantii 3937] Length = 246 Score = 55.3 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 42/249 (16%), Positives = 83/249 (33%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T EE++ +V+ R + G Sbjct: 29 GCLMRCLYCHNRDTWDTHGGKE--VTVEELMKEVVTYRHFMNASGGG------------- 73 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 V GE + + V+ A G++ L T+GFV P I + + Sbjct: 74 -----VTASGGEAILQAEFVRDWFR-ACHEQGIN-----TCLDTNGFVRRYDPVIDELLD 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L +++++ LV ++ L+ Y N R YV++ G + Sbjct: 123 VTD-LVMLDLKQLNDEVHQNLVGVSNHRTLD-----FARYLAKRNQ-RTWIRYVVVPGWS 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 D A L + K + KI L+P++ ++ + Sbjct: 176 DDDASAHQLGEFTKDMHNIEKIELLPYHELGKHKWTAMGEEYKLDGVKPPKADTMDRIKS 235 Query: 340 CIKRSGYSS 348 + G+ Sbjct: 236 ILTSYGHKV 244 >gi|213622072|ref|ZP_03374855.1| hypothetical protein SentesTyp_32941 [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 55 Score = 55.3 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 4/44 (9%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYV 44 +N K +L+ + R+++ E +G R Q+ KW+Y Sbjct: 16 LNNETKINLLDLNRQQMREFFKNLG----EKPFRADQVMKWMYH 55 >gi|288870671|ref|ZP_06114917.2| radical SAM domain protein [Clostridium hathewayi DSM 13479] gi|288866314|gb|EFC98612.1| radical SAM domain protein [Clostridium hathewayi DSM 13479] Length = 451 Score = 55.3 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 40/216 (18%), Positives = 81/216 (37%), Gaps = 23/216 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L C +C+ E + R+L+ G + ++ ++ S Sbjct: 94 ALCLHIAHDCNLACQYCFAEE---------GEYHGR----RALMSFEVGKKALDFLIANS 140 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV--- 231 R+ + G GEPL N++ VK+ + R T++T+G + N + Sbjct: 141 GNRRNLEVDFFG-GEPLMNWEVVKQLVEYGRSKEKEYNKNFRFTMTTNGVLLNDEIMEYC 199 Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 E V+L++ ND + K ++++ R + + R + Sbjct: 200 NREMSNVVLSLDGRKEVNDK--MRPFRGGKGSYDLIVPKFRKFAEMRGDRDYYVRGTFTR 257 Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 D +D + + G + +++ P P EY Sbjct: 258 HNLDFSKDVMEFADL--GFRS-MSIEPVVAAPEEEY 290 >gi|91225254|ref|ZP_01260422.1| pyruvate formate-lyase 1 activating enzyme [Vibrio alginolyticus 12G01] gi|91189893|gb|EAS76165.1| pyruvate formate-lyase 1 activating enzyme [Vibrio alginolyticus 12G01] Length = 246 Score = 55.3 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 35/249 (14%), Positives = 82/249 (32%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T EEI+ + R + G Sbjct: 29 GCLMRCKYCHNRDTWDTHDGKE--VTVEEIISEAKSYRHFMNASGGG------------- 73 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN----IARVGE 233 V GE + + V+ A L T+G+V I V + Sbjct: 74 -----VTCSGGEAMLQPEFVRDFFRAAKAE------GIHTCLDTNGYVRKHTDVIDEVLD 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + + + +++ L+ ++ + +D R+ + ++ YV++ G Sbjct: 123 ATD-LVMLDIKHMKDEVHQDLIGVSNR----RTLDFARYLQKI--GKKTWIRYVVVPGYT 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSE 339 D P A L + +K + K+ L+P++ ++ ++ + Sbjct: 176 DDPEAAHMLGEFIKDMDNIEKVELLPYHKLGAHKWEALGLEYPLEGVNPPPKETMDEIQS 235 Query: 340 CIKRSGYSS 348 + + + Sbjct: 236 ILAQYNDNV 244 >gi|325262044|ref|ZP_08128782.1| radical SAM domain protein [Clostridium sp. D5] gi|324033498|gb|EGB94775.1| radical SAM domain protein [Clostridium sp. D5] Length = 473 Score = 55.3 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 74/195 (37%), Gaps = 20/195 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L C +C+ E + R+L+ G + ++ ++ S Sbjct: 107 ALCLHIAHDCNLACKYCFAEE---------GEYHGR----RALMSYEVGKKALDFLIANS 153 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARV- 231 R+ + G GEPL N+ VK ++ + L R TL+T+G + + Sbjct: 154 GSRRNLEVDFFG-GEPLMNWQVVKDLVAYGREQEKLHNKHFRFTLTTNGVLLNDEVQEFV 212 Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 E V+L++ ND + N K ++++ + N + + Sbjct: 213 NREMDNVVLSLDGRKEVND--RMRPFRNGKGSYDLIVPKFQKLADSRNQEKYYIRGTFTR 270 Query: 291 GINDSPRDALNLIKI 305 D +D ++ ++ Sbjct: 271 ENLDFSKDVMHFAEL 285 >gi|269967633|ref|ZP_06181683.1| pyruvate formate-lyase 1 activating enzyme [Vibrio alginolyticus 40B] gi|269827720|gb|EEZ82004.1| pyruvate formate-lyase 1 activating enzyme [Vibrio alginolyticus 40B] Length = 246 Score = 55.3 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 35/249 (14%), Positives = 82/249 (32%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T EEI+ + R + G Sbjct: 29 GCLMRCKYCHNRDTWDTHDGKE--VTVEEIISEAKSYRHFMNASGGG------------- 73 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN----IARVGE 233 V GE + + V+ A L T+G+V I V + Sbjct: 74 -----VTCSGGEAMLQPEFVRDFFRAAKTE------GIHTCLDTNGYVRKHTDVIDEVLD 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + + + +++ L+ ++ + +D R+ + ++ YV++ G Sbjct: 123 ATD-LVMLDIKHMKDEVHQDLIGVSNR----RTLDFARYLQKI--GKKTWIRYVVVPGYT 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSE 339 D P A L + +K + K+ L+P++ ++ ++ + Sbjct: 176 DDPEAAHMLGEFIKDMDNIEKVELLPYHKLGAHKWEALGLEYPLEGVNPPPKETMDEIQS 235 Query: 340 CIKRSGYSS 348 + + + Sbjct: 236 ILAQYNDNV 244 >gi|331086137|ref|ZP_08335219.1| hypothetical protein HMPREF0987_01522 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406296|gb|EGG85810.1| hypothetical protein HMPREF0987_01522 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 466 Score = 54.9 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 73/195 (37%), Gaps = 20/195 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L C +C+ E + R+L+ G + ++ ++ S Sbjct: 110 ALCMHIAHDCNLACKYCFAEE---------GEYHGR----RALMSYEVGKKALDFLIANS 156 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARV- 231 R+ + G GEPL N+ VK ++ + + R T++T+G + + Sbjct: 157 GNRRNLEVDFFG-GEPLMNWQVVKDLVAYGREQEKIHNKNFRFTITTNGVLLNDEVQEFV 215 Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 E V+L++ ND + N K ++++ + N + + Sbjct: 216 NKEMDNVVLSLDGRKEVNDK--MRPFRNGKGSYDLIVPKFQKLADSRNQEKYYVRGTFTR 273 Query: 291 GINDSPRDALNLIKI 305 D +D L+ + Sbjct: 274 DNLDFSKDVLHFADL 288 >gi|332653319|ref|ZP_08419064.1| radical SAM domain protein [Ruminococcaceae bacterium D16] gi|332518465|gb|EGJ48068.1| radical SAM domain protein [Ruminococcaceae bacterium D16] Length = 471 Score = 54.9 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 71/224 (31%), Gaps = 27/224 (12%) Query: 88 WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147 L + LC+ C+L C +C+ T Sbjct: 74 LLFSSDDYIDADKA---MALPRQAVVKALCLHVSHDCNLRCKYCFASTGDFG-------- 122 Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207 R ++ I+ +V S R+ + G GEPL D VKK++ A Sbjct: 123 -----TGRKIMDFETAKRAIDWVVAKSGKRRNIEVDFFG-GEPLMAMDTVKKTVEYARSL 176 Query: 208 MGLSFSKRRITLSTSGF------VPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKY 261 R T++T+G + I R E V+L++ ND ++ +N K Sbjct: 177 EKEHDKVFRFTITTNGVLLNDENIEYINR--EMSNVVLSLDGRPGVND--HMRPTVNGKG 232 Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 E+++ + + + D D +L + Sbjct: 233 SYEVIVPKFQKLVAGRGTKDYYARGTFTRENLDFGEDVKHLASL 276 >gi|331092439|ref|ZP_08341264.1| hypothetical protein HMPREF9477_01907 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401282|gb|EGG80871.1| hypothetical protein HMPREF9477_01907 [Lachnospiraceae bacterium 2_1_46FAA] Length = 303 Score = 54.9 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 54/156 (34%), Gaps = 31/156 (19%) Query: 214 KRRITLSTSGFVPNIARVGEEIGV------MLAISLHAVSNDLRNILVPINRKYPLEMLI 267 IT+ T GF P E + + + N+ + + LI Sbjct: 155 GYNITIDTCGFAPE-----ENFQIVLPYVDTFLYDIKLMDNEKHKKYMGQSN-----ELI 204 Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK--INLIPFNPWPGCE 325 Y N RI ++ G+NDS + +I LK + +NL+P++ + Sbjct: 205 FTNLKYLS-DNGARIYIRIPVIGGVNDSDEEIQAIISYLKENISVAQVNLLPYHDIASSK 263 Query: 326 YLC------------SDQKDIVTFSECIKRSGYSSP 349 Y ++ + E +++G+++ Sbjct: 264 YQRLDVTYKGKEFTVPSKERMEELKEMFQKNGFTNT 299 >gi|325662334|ref|ZP_08150943.1| hypothetical protein HMPREF0490_01682 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471336|gb|EGC74559.1| hypothetical protein HMPREF0490_01682 [Lachnospiraceae bacterium 4_1_37FAA] Length = 466 Score = 54.9 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 73/195 (37%), Gaps = 20/195 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L C +C+ E + R+L+ G + ++ ++ S Sbjct: 110 ALCMHIAHDCNLACKYCFAEE---------GEYHGR----RALMSYEVGKKALDFLIANS 156 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARV- 231 R+ + G GEPL N+ VK ++ + + R T++T+G + + Sbjct: 157 GNRRNLEVDFFG-GEPLMNWQVVKDLVAYGREQEKIHNKNFRFTITTNGVLLNDEVQEFV 215 Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 E V+L++ ND + N K ++++ + N + + Sbjct: 216 NKEMDNVVLSLDGRKEVNDK--MRPFRNGKGSYDLIVPKFQKLADSRNQEKYYVRGTFTR 273 Query: 291 GINDSPRDALNLIKI 305 D +D L+ + Sbjct: 274 DNLDFSKDVLHFADL 288 >gi|325291406|ref|YP_004267587.1| Radical SAM domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324966807|gb|ADY57586.1| Radical SAM domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 490 Score = 54.9 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 55/270 (20%), Positives = 94/270 (34%), Gaps = 41/270 (15%) Query: 91 RFPARCIGGPVEIETVYIPEKSR---GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147 + E E I +C+ C+L C++C+ GT Sbjct: 85 QLQDEGTLFSPEAEKYEIRYPEEPLIKAICLHVAHDCNLRCTYCFAGTGAFG-------- 136 Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207 R ++ G + I+ ++ S R + G GEPL NF+ VK+ ++ + Sbjct: 137 -----GGRRMMDLETGKKAIDFILEHSGSRPHCEVDFFG-GEPLMNFEVVKELVTYGKKA 190 Query: 208 MGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYP--- 262 K + TL+T+ + I E + +SL D R + R +P Sbjct: 191 AKEKGKKIKFTLTTNAVLLDQEIRTFLEREEISAVLSL-----DGRKEVNDRARPFPGGR 245 Query: 263 ------LEMLIDACRHYPGLSNARRITFEYV--MLKGIN-DSPRDALNLIKILKGIPAKI 313 + + + P S T+ YV N D +D ++L + GI +I Sbjct: 246 GSYDRIVPRIREFIERRPEASPYAIGTYYYVRGTFTHFNTDFHKDVIHLADL--GID-RI 302 Query: 314 NLIPFNPWPGCEY--LCSDQKDIVTFSECI 341 +L P P EY D I + + Sbjct: 303 SLEPVVAEPDKEYAFQEEDMDRINEAYDVL 332 >gi|168183500|ref|ZP_02618164.1| glycyl-radical enzyme activating family protein [Clostridium botulinum Bf] gi|182673358|gb|EDT85319.1| glycyl-radical enzyme activating family protein [Clostridium botulinum Bf] Length = 300 Score = 54.9 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 43/275 (15%), Positives = 94/275 (34%), Gaps = 55/275 (20%) Query: 107 YIPEKSRGTLCVSSQVGCSLT---------------CSFCYTGTQKLVRNLTAEEILLQV 151 + + R T C C C+FC T N A E + + Sbjct: 48 IMFFEERCTACGICVKRCPQKVITMKNNIPMVDEGKCNFCGKCTN-FCPN-NAREYVGKD 105 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS-IASDSMGL 210 L ++ ++ + E + G GEP+ + D ++ I + Sbjct: 106 LTSQEIIKEIIKDEVFYEQSGGG-------VTFSG-GEPMLHAD----FINGILEECKAR 153 Query: 211 SFSKRRITLSTSGFVP--NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 T+ TSG+V +V +++ + L L +++N++ + + ++ Sbjct: 154 GI---HTTIDTSGYVSWDKFEKVRDKVDLFL-YDLKSMNNEIHKKYTGVENTI-ILENLE 208 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI-PAKINLIPFNPWPGCEYL 327 Y I ++K +ND+ ++ IK + + ++NL+P++ +Y Sbjct: 209 LLSKY-----GHNIYLRIPIIKDVNDNNKNIDETIKFISKLHLIQVNLLPYHKMGMDKYK 263 Query: 328 C------------SDQKDIVTFSECIKRSGYSSPI 350 + + +E K++G I Sbjct: 264 RLKMEYKLTGEEKPSDEKMNEIAEKFKQAGIKVKI 298 >gi|15894473|ref|NP_347822.1| Fe-S-cluster redox protein [Clostridium acetobutylicum ATCC 824] gi|15024112|gb|AAK79162.1|AE007633_6 Predicted Fe-S-cluster redox enzyme, YLON B.subtilis homolog [Clostridium acetobutylicum ATCC 824] gi|325508604|gb|ADZ20240.1| Fe-S-cluster redox enzyme [Clostridium acetobutylicum EA 2018] Length = 337 Score = 54.9 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 39/231 (16%), Positives = 71/231 (30%), Gaps = 35/231 (15%) Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168 P + + +S+Q GC C FC N+T ++ Q+ A +L + E + Sbjct: 63 PLTKKWVVTMSTQYGCDSGCKFCDVPKVGKGVNVTYNDLKTQLEQALNLHPEIDRTERL- 121 Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI-TLSTSGFVPN 227 NI MGEP N D V + + + I + T+ Sbjct: 122 ------------NIHYARMGEPSWNND-VLDFTRNLKNIVKPYIGESLIHPVFTTMCPNK 168 Query: 228 IARVGEEI-------------GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274 + I L +S+++ + + R + N L + P Sbjct: 169 NKFLAHRINEWVDIKNNLFQGDAGLQLSINSTNENQRRDMFRGN-ALTLNEISSIGNDLP 227 Query: 275 GLSNARRITFEYVMLKGINDSPR-DALNLIKILKGIPAKINLIPFNPWPGC 324 + Y + + D DA L K+ + + P + Sbjct: 228 MPKGRK-----YCLNFALADEYEVDAKVLKKLFDPSKFMVKITPLHKTVSS 273 >gi|168179167|ref|ZP_02613831.1| glycyl-radical enzyme activating family protein [Clostridium botulinum NCTC 2916] gi|226950612|ref|YP_002805703.1| glycyl-radical enzyme activating family protein [Clostridium botulinum A2 str. Kyoto] gi|182670116|gb|EDT82092.1| glycyl-radical enzyme activating family protein [Clostridium botulinum NCTC 2916] gi|226844506|gb|ACO87172.1| glycyl-radical enzyme activating family protein [Clostridium botulinum A2 str. Kyoto] Length = 301 Score = 54.9 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 43/275 (15%), Positives = 94/275 (34%), Gaps = 55/275 (20%) Query: 107 YIPEKSRGTLCVSSQVGCSLT---------------CSFCYTGTQKLVRNLTAEEILLQV 151 + + R T C C C+FC T N A E + + Sbjct: 48 IMFFEERCTACGICVKRCPQKVITMKNNIPMVDEGKCNFCGKCTN-FCPN-NAREYVGKD 105 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS-IASDSMGL 210 L ++ ++ + E + G GEP+ + D ++ I + Sbjct: 106 LTSQEIIKEIIKDEVFYEQSGGG-------VTFSG-GEPMLHAD----FINGILEECKAR 153 Query: 211 SFSKRRITLSTSGFVP--NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 T+ TSG+V +V +++ + L L +++N++ + + ++ Sbjct: 154 GI---HTTIDTSGYVSWDKFEKVRDKVDLFL-YDLKSMNNEIHKKYTGVENTI-ILENLE 208 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI-PAKINLIPFNPWPGCEYL 327 Y I ++K +ND+ ++ IK + + ++NL+P++ +Y Sbjct: 209 LLSKY-----GHNIYLRIPIIKDVNDNNKNIDETIKFISKLHLIQVNLLPYHKMGMDKYK 263 Query: 328 C------------SDQKDIVTFSECIKRSGYSSPI 350 + + +E K++G I Sbjct: 264 RLKMEYKLTGEEKPSDEKMNEIAEKFKQAGIKVKI 298 >gi|295105390|emb|CBL02934.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Faecalibacterium prausnitzii SL3/3] Length = 486 Score = 54.9 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 38/204 (18%), Positives = 76/204 (37%), Gaps = 24/204 (11%) Query: 110 EKSRGT----LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCE 165 K+R T LC+ C+L+CS+C+ + + R+L+ G Sbjct: 91 FKNRNTVVKALCLHVAHSCNLSCSYCFASQGRYHGD-------------RALMSFEVGKR 137 Query: 166 DIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225 ++ ++ S R+ + G GEPL NF+ VKK ++ + + R T++T+G + Sbjct: 138 AMDFLIENSGTRRNLEVDFFG-GEPLMNFEMVKKLVAYCREQEKIHNKNFRFTMTTNGVL 196 Query: 226 ---PNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281 I +E V+L++ ND V + ++ + + + Sbjct: 197 IDDDVIDFCNKECHNVVLSLDGRKEVND--RFRVDCAGNGSYDRIVPKFQEFVKKRGDKN 254 Query: 282 ITFEYVMLKGINDSPRDALNLIKI 305 D D ++ + Sbjct: 255 YYMRGTYTHFNTDFTNDIFHMADL 278 >gi|254976344|ref|ZP_05272816.1| putative radical SAM family protein [Clostridium difficile QCD-66c26] gi|255093729|ref|ZP_05323207.1| putative radical SAM family protein [Clostridium difficile CIP 107932] gi|255101920|ref|ZP_05330897.1| putative radical SAM family protein [Clostridium difficile QCD-63q42] gi|255307789|ref|ZP_05351960.1| putative radical SAM family protein [Clostridium difficile ATCC 43255] gi|255315481|ref|ZP_05357064.1| putative radical SAM family protein [Clostridium difficile QCD-76w55] gi|255518144|ref|ZP_05385820.1| putative radical SAM family protein [Clostridium difficile QCD-97b34] gi|255651260|ref|ZP_05398162.1| putative radical SAM family protein [Clostridium difficile QCD-37x79] gi|260684324|ref|YP_003215609.1| putative radical SAM family protein [Clostridium difficile CD196] gi|260687983|ref|YP_003219117.1| putative radical SAM family protein [Clostridium difficile R20291] gi|306521102|ref|ZP_07407449.1| putative radical SAM family protein [Clostridium difficile QCD-32g58] gi|260210487|emb|CBA64969.1| putative radical SAM family protein [Clostridium difficile CD196] gi|260214000|emb|CBE06119.1| putative radical SAM family protein [Clostridium difficile R20291] Length = 459 Score = 54.9 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 74/199 (37%), Gaps = 27/199 (13%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC++ C+L C +C+ E + L+ G I+ ++ S Sbjct: 95 ALCLNVAHDCNLKCKYCFAAQGDF-----GGE--------KELMSFEVGKAAIDYLIANS 141 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSL---SIASDSMGLSFSKRRITLSTSGFV---PNI 228 RK I G GEPL NF+ VK+ + + R T++T+G + I Sbjct: 142 GSRKNLEIDFFG-GEPLMNFEVVKQLVDYGRSVEKDYNKNI---RFTITTNGVLLNDEII 197 Query: 229 ARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF-EY 286 + E + V+L++ ND N+ +N K ++ + + + + Sbjct: 198 DYINENMHNVVLSLDGRKEVND--NMRPTLNDKGSYDITLPRFKKLVEKRAKDKYYYIRG 255 Query: 287 VMLKGINDSPRDALNLIKI 305 + D +D ++ + Sbjct: 256 TFTRDNLDFSKDVMHFADL 274 >gi|153940128|ref|YP_001392535.1| glycyl-radical enzyme activating family protein [Clostridium botulinum F str. Langeland] gi|152936024|gb|ABS41522.1| glycyl-radical enzyme activating family protein [Clostridium botulinum F str. Langeland] gi|295320521|gb|ADG00899.1| glycyl-radical enzyme activating family protein [Clostridium botulinum F str. 230613] Length = 300 Score = 54.9 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 41/274 (14%), Positives = 91/274 (33%), Gaps = 53/274 (19%) Query: 107 YIPEKSRGTLCVSSQVGCSLT---------------CSFCYTGTQKLVRNLTAEEILLQV 151 + + R T C C C+FC T N A E + + Sbjct: 48 IMFFEERCTACGICVKRCPQKIITMKNNIPVVDEGKCNFCGKCTN-FCPN-NAREYVGKD 105 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 L ++ ++ + E + G GEP+ + D ++ + Sbjct: 106 LTSQEIIKEIIKDEVFYEQSGGG-------VTFSG-GEPMLHAD----FINGILEE--CK 151 Query: 212 FSKRRITLSTSGFVP--NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 T+ TSG+V +V +++ + L L +++N++ + + ++ Sbjct: 152 VRGIHTTIDTSGYVSWDKFEKVRDKVDLFL-YDLKSMNNEIHKKYTGVENTI-ILENLEL 209 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI-PAKINLIPFNPWPGCEYLC 328 Y I ++ +ND+ + IK + + ++NL+P++ +Y Sbjct: 210 LSKY-----GHNIYLRIPIINDVNDNNENIDETIKFISKLHLIQVNLLPYHKMGMDKYKR 264 Query: 329 ------------SDQKDIVTFSECIKRSGYSSPI 350 + + +E K++G I Sbjct: 265 LKMEYKLTGEEKPSDEKMNEIAEKFKQAGIKVKI 298 >gi|255656734|ref|ZP_05402143.1| putative radical SAM family protein [Clostridium difficile QCD-23m63] gi|296452437|ref|ZP_06894138.1| radical SAM domain protein [Clostridium difficile NAP08] gi|296877786|ref|ZP_06901812.1| radical SAM domain protein [Clostridium difficile NAP07] gi|296258767|gb|EFH05661.1| radical SAM domain protein [Clostridium difficile NAP08] gi|296431237|gb|EFH17058.1| radical SAM domain protein [Clostridium difficile NAP07] Length = 459 Score = 54.9 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 74/199 (37%), Gaps = 27/199 (13%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC++ C+L C +C+ E + L+ G I+ ++ S Sbjct: 95 ALCLNVAHDCNLKCKYCFAAQGDF-----GGE--------KELMSFEVGKAAIDYLIANS 141 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSL---SIASDSMGLSFSKRRITLSTSGFV---PNI 228 RK I G GEPL NF+ VK+ + + R T++T+G + I Sbjct: 142 GSRKNLEIDFFG-GEPLMNFEVVKQLVYYGRSVEKDYNKNI---RFTITTNGVLLNDEII 197 Query: 229 ARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF-EY 286 + E + V+L++ ND N+ +N K ++ + + + + Sbjct: 198 DYINENMHNVVLSLDGRKEVND--NMRPTLNDKGSYDITLPRFKKLVEKRAKDKYYYIRG 255 Query: 287 VMLKGINDSPRDALNLIKI 305 + D +D ++ + Sbjct: 256 TFTRDNLDFSKDVMHFADL 274 >gi|303234218|ref|ZP_07320864.1| six-Cys-in-45 modification radical SAM protein [Finegoldia magna BVS033A4] gi|302494759|gb|EFL54519.1| six-Cys-in-45 modification radical SAM protein [Finegoldia magna BVS033A4] Length = 452 Score = 54.9 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 38/215 (17%), Positives = 79/215 (36%), Gaps = 26/215 (12%) Query: 98 GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157 + IE E +C+ C+L C +C+ + ++ Sbjct: 75 DDYLHIEDFKKREPVLKAMCLHVVHDCNLKCEYCFASQGDFGGH-------------KAY 121 Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI---ASDSMGLSFSK 214 + + G + ++ +V S RK + G GEPL +F+ VKK + ++ G F Sbjct: 122 MTEEVGKKALKYLVDNSGSRKFLEVDFFG-GEPLMDFELVKKLVKYGNEIAEEKGKKF-- 178 Query: 215 RRITLSTSGFVPNIARV----GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 R T++T+G + + ++ V+L++ ND N+ +N K ++++ Sbjct: 179 -RFTITTNGVLLDDDKIDFINKNMHNVVLSLDGRKSVND--NMRKTLNDKGSYDLIVPKF 235 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + + K D D + + Sbjct: 236 QKLIKGRKGKYYYVRGTFTKKNLDFSEDVKHFKDL 270 >gi|299144022|ref|ZP_07037102.1| radical SAM domain protein [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518507|gb|EFI42246.1| radical SAM domain protein [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 448 Score = 54.9 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 42/266 (15%), Positives = 97/266 (36%), Gaps = 48/266 (18%) Query: 42 IYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPV 101 +Y + + + +R +++ I + + + D K L + Sbjct: 45 LYKKYALKYDY-----ESIREAISE---INALKEDEVLFTED---KRLFK---------- 83 Query: 102 EIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF 161 +Y P+ +C+ C+L C +C+ R L+ + Sbjct: 84 ---PIYNPDNIVKAMCLHVAHDCNLRCKYCFASQGDFNG-------------KRLLMDEE 127 Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI-ASDSMGLSFSKRRITLS 220 G + ++ ++ S RK + G GEPL NF+ VKK + ++ + R T++ Sbjct: 128 TGKKALDFILKNSGNRKNLEVDFFG-GEPLMNFELVKKLVDYGRNEEKKYN-KHFRFTIT 185 Query: 221 TSGFV---PNIARVGEEIG-VMLAISLH-AVSNDLRNILVPINRKYPLEMLIDACRHYPG 275 T+G + I + E + V+L++ V++ +R + ++K ++++ + Sbjct: 186 TNGVLLRDDVIDYINENMDNVVLSLDGRKCVNDYMRPTI---SKKGSYDIIVPKFKKLVD 242 Query: 276 LSNARRITFEYVMLKGINDSPRDALN 301 + D +D + Sbjct: 243 KRGDKDYYIRGTFTNENLDFSQDLME 268 >gi|302379699|ref|ZP_07268184.1| six-Cys-in-45 modification radical SAM protein [Finegoldia magna ACS-171-V-Col3] gi|302312606|gb|EFK94602.1| six-Cys-in-45 modification radical SAM protein [Finegoldia magna ACS-171-V-Col3] Length = 452 Score = 54.9 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 38/215 (17%), Positives = 79/215 (36%), Gaps = 26/215 (12%) Query: 98 GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157 + IE E +C+ C+L C +C+ + ++ Sbjct: 75 DDYLHIEDFKKREPVLKAMCLHVVHDCNLKCEYCFASQGDFGGH-------------KAY 121 Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI---ASDSMGLSFSK 214 + + G + ++ +V S RK + G GEPL +F+ VKK + ++ G F Sbjct: 122 MTEEVGKKALKYLVDNSGSRKFLEVDFFG-GEPLMDFELVKKLVKYGNEIAEEKGKKF-- 178 Query: 215 RRITLSTSGFVPNIARV----GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 R T++T+G + + ++ V+L++ ND N+ +N K ++++ Sbjct: 179 -RFTITTNGVLLDDDKIDFINKNMHNVVLSLDGRKSVND--NMRKTLNDKGSYDLIVPKF 235 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + + K D D + + Sbjct: 236 QKLIKGRKGKYYYVRGTFTKKNLDFSEDVKHFKDL 270 >gi|303242022|ref|ZP_07328514.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2] gi|302590440|gb|EFL60196.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2] Length = 455 Score = 54.5 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 36/204 (17%), Positives = 71/204 (34%), Gaps = 28/204 (13%) Query: 110 EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169 LC+ C+L C +C+ +A+SL+ + ++ Sbjct: 90 YNGIKALCLHVAHDCNLMCEYCFASKGSYK-------------VAKSLMPAEVAFKAVDF 136 Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI---ASDSMGLSFSKRRITLSTSGFV- 225 +V S RK I G GEPL NFD +K+++ + G + T++T+G + Sbjct: 137 VVNNSGTRKNVEIDFFG-GEPLLNFDVIKQTVEYSKKVQERSGKNI---YFTITTNGTLL 192 Query: 226 --PNIARVGEEI-GVMLAISLHAVS-NDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281 I + E + V+++I + +R K + ++ + Sbjct: 193 DDEKIKYINENMNNVVISIDGRKEVHDAIR---YDAGHKGTYDKILKNALKLVEGRKGKS 249 Query: 282 ITFEYVMLKGINDSPRDALNLIKI 305 D +D +L + Sbjct: 250 YFIRGTFTSRNLDFSKDVFHLADL 273 >gi|169824972|ref|YP_001692583.1| arylsulfatase regulator [Finegoldia magna ATCC 29328] gi|167831777|dbj|BAG08693.1| arylsulfatase regulator [Finegoldia magna ATCC 29328] Length = 452 Score = 54.5 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 38/215 (17%), Positives = 79/215 (36%), Gaps = 26/215 (12%) Query: 98 GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157 + IE E +C+ C+L C +C+ + ++ Sbjct: 75 DDYLHIEDFKKREPVLKAMCLHVVHDCNLKCEYCFASQGDFGGH-------------KAY 121 Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI---ASDSMGLSFSK 214 + + G + ++ +V S RK + G GEPL +F+ VKK + ++ G F Sbjct: 122 MTEEVGKKALKYLVDNSGSRKFLEVDFFG-GEPLMDFELVKKLVKYGNEIAEEKGKKF-- 178 Query: 215 RRITLSTSGFVPNIARV----GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 R T++T+G + + ++ V+L++ ND N+ +N K ++++ Sbjct: 179 -RFTITTNGVLLDDDKIDFINKNMHNVVLSLDGRKSVND--NMRKTLNDKGSYDLIVPKF 235 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + + K D D + + Sbjct: 236 QKLIKGRKGKYYYVRGTFTKKNLDFSEDVKHFKDL 270 >gi|251791924|ref|YP_003006644.1| pyruvate formate-lyase 1-activating enzyme [Aggregatibacter aphrophilus NJ8700] gi|247533311|gb|ACS96557.1| pyruvate formate-lyase 1-activating enzyme [Aggregatibacter aphrophilus NJ8700] Length = 246 Score = 54.5 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 44/249 (17%), Positives = 88/249 (35%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFCYTGT-----QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C+ +T EE++ +V+ R + G Sbjct: 29 GCLMRCKYCHNRDTWDLHGGKE--VTVEELMKEVVSYRHFMNASGGG------------- 73 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN----IARVGE 233 V GE + + V+ S L T+GFV + I + + Sbjct: 74 -----VTASGGEAILQAEFVRDWFRACKKE---GISTC---LDTNGFVRHYDHVIDELMD 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++L + L +++++ IL+ + K LE Y N R+ YV++ G Sbjct: 123 VTDLVL-LDLKELNDEVHQILIGVPNKRTLE-----FAKYLQKRNQ-RVWVRYVVVPGYT 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 DS D L K ++G+ K+ L+P++ ++ ++ + Sbjct: 176 DSDNDIHLLGKFIEGMTNIEKVELLPYHRLGAHKWAAMGEKYELEDVKPPTKESLEHIKT 235 Query: 340 CIKRSGYSS 348 ++ G+ Sbjct: 236 ILESYGHVV 244 >gi|260913766|ref|ZP_05920242.1| pyruvate formate-lyase 1-activating enzyme [Pasteurella dagmatis ATCC 43325] gi|260632305|gb|EEX50480.1| pyruvate formate-lyase 1-activating enzyme [Pasteurella dagmatis ATCC 43325] Length = 246 Score = 54.5 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 42/246 (17%), Positives = 85/246 (34%), Gaps = 50/246 (20%) Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC + C +C+ T R +T EE++ +V+ R + G G + Sbjct: 29 GCLMRCKYCHNRDTWDLHGGREITVEELMKEVVTYRHFMNASGGGVTASGGEAVLQAEFV 88 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVM 238 + K+ +G+ L T+GFV N V +E+ V Sbjct: 89 RD---------------WFKACK----DVGI-----HTCLDTNGFVRNYDHVIDELIDVT 124 Query: 239 --LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 + + L +++ + L+ + K LE Y N + YV++ G D+ Sbjct: 125 DLVLLDLKQLNDKIHQNLIGVPNKRTLE-----FAQYLAKRNQ-PVWIRYVVVPGYTDAD 178 Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIK 342 D L +K + K+ L+P++ ++ ++ + ++ Sbjct: 179 EDIHLLGNFIKDMKNIEKVELLPYHRLGAHKWEAMGEKYELENVSPPTKESLEHIKSILE 238 Query: 343 RSGYSS 348 G+ Sbjct: 239 GYGHIV 244 >gi|89897766|ref|YP_521253.1| hypothetical protein DSY5020 [Desulfitobacterium hafniense Y51] gi|219670914|ref|YP_002461349.1| radical SAM protein [Desulfitobacterium hafniense DCB-2] gi|89337214|dbj|BAE86809.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219541174|gb|ACL22913.1| Radical SAM domain protein [Desulfitobacterium hafniense DCB-2] Length = 476 Score = 54.5 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 46/255 (18%), Positives = 95/255 (37%), Gaps = 33/255 (12%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 +C+ C+L C++C+ GT R L+ G + I+ ++ S Sbjct: 112 AICLHVAHDCNLRCNYCFAGTGAFGGQ-------------RGLMDVATGKQAIDFVLEAS 158 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVG 232 RK + G GEPL N+ VK+ + ++ + T++T+ + I Sbjct: 159 AHRKHCEVDFFG-GEPLLNYQMVKEVVRYGKEAAQAKGKTIKFTITTNAVLLSEEIQNFL 217 Query: 233 EEIGVMLAISLHAVSNDLRNILVPI-NRKYPLEMLIDACRHYPGLSNARRI----TFEYV 287 E+ + + +S+ ++ + + P N + + + + T+ Y Sbjct: 218 EQEDISVVLSIDG-RPEVHDRMRPYANGQGSYAQVAPRLQQFAAKRPESSPYAVGTYYYA 276 Query: 288 --MLKGIN-DSPRDALNLIKILKGIPAKINLIPFNPWPGCEY--LCSDQKDIVTFSECIK 342 N D +D +L+ + G+ +I+L P P Y D +I+ + + Sbjct: 277 RGTYTHYNLDFDQDVTHLLDL--GMK-QISLEPVVAQPSDPYAFQEGDLPEILKTYDRLG 333 Query: 343 RSGYSSPIRTPRGLD 357 + R +G D Sbjct: 334 EELLA---RRRKGED 345 >gi|160941098|ref|ZP_02088436.1| hypothetical protein CLOBOL_05992 [Clostridium bolteae ATCC BAA-613] gi|158436047|gb|EDP13814.1| hypothetical protein CLOBOL_05992 [Clostridium bolteae ATCC BAA-613] Length = 482 Score = 54.5 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 37/195 (18%), Positives = 71/195 (36%), Gaps = 20/195 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L C +C+ E + R+L+ G + ++ ++ S Sbjct: 123 ALCLHIAHDCNLACRYCFAEE---------GEYHGR----RALMSYEVGKKALDFLIANS 169 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV--- 231 R+ + G GEPL N+D VK+ + K R TL+T+G + N + Sbjct: 170 GNREHLEVDFFG-GEPLMNWDVVKRLVEYGRSQEEAHHKKFRFTLTTNGVLLNDEVMEFC 228 Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 E V+L++ ND + N ++++ + + + Sbjct: 229 NREMSNVVLSLDGRKDVNDK--MRPFRNGSGSYDLIVPKFQKFADSRKQMNYYVRGTFTR 286 Query: 291 GINDSPRDALNLIKI 305 D D L+ + Sbjct: 287 NNLDFADDVLHYADL 301 >gi|260437940|ref|ZP_05791756.1| radical SAM domain protein [Butyrivibrio crossotus DSM 2876] gi|292809691|gb|EFF68896.1| radical SAM domain protein [Butyrivibrio crossotus DSM 2876] Length = 468 Score = 54.5 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 75/201 (37%), Gaps = 32/201 (15%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 +C+ C+L C +C+ E + R+L+ G + ++ +V S Sbjct: 97 AMCLHIAHDCNLACKYCFAEE---------GEYHGR----RALMSAEVGKKALDFLVANS 143 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR-----RITLSTSGFV--PN 227 R+ + G GEPL NF VK+ + G K R T++T+G + Sbjct: 144 GKRRNLEVDFFG-GEPLMNFGVVKEIVE-----YGRQLEKEHDKLFRFTMTTNGVLLNDE 197 Query: 228 IARV--GEEIGVMLAISLHAVSNDLRNILVPI-NRKYPLEMLIDACRHYPGLSNARRITF 284 + E V+L++ ++ +++ P N + ++++ + N Sbjct: 198 VQEFVNKECGNVVLSVDGRK---EVHDMMRPFRNGQGSYDLIMPKFKKIADSRNQMNYYV 254 Query: 285 EYVMLKGINDSPRDALNLIKI 305 D +D L+L + Sbjct: 255 RGTFTHNNLDFSKDVLSLADL 275 >gi|157374846|ref|YP_001473446.1| pyruvate formate lyase-activating enzyme 1 [Shewanella sediminis HAW-EB3] gi|157317220|gb|ABV36318.1| (Formate-C-acetyltransferase)-activating enzyme [Shewanella sediminis HAW-EB3] Length = 246 Score = 54.5 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 40/247 (16%), Positives = 84/247 (34%), Gaps = 52/247 (21%) Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC + C +C+ T R + +E++ Q++ R P E G V S G I Sbjct: 29 GCLMRCQYCHNRDTWDLHGGREIEVDELMTQIISYR------PFLEASGGGVTASGGEAI 82 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGEEI 235 + + K+ G+ L T+GFV P I + + Sbjct: 83 LQAEFVS---------ALFKACK----KEGI-----HTCLDTNGFVRKHTPVIDELLDNT 124 Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 ++L + + + + L ++ L+ Y ++ YV++ G D Sbjct: 125 DLVL-LDIKHIDDKRHIDLTKVSNHRTLQ-----FAEYLSKR-QQKTWVRYVVVGGFTDD 177 Query: 296 PRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECI 341 A L + +K + K+ L+P++ ++ + + + Sbjct: 178 IPSAKRLAEFIKPMKNVEKVELLPYHELGKHKWEAMGEEYELNNISPPSSETMEQIKQVF 237 Query: 342 KRSGYSS 348 +G ++ Sbjct: 238 IDAGINA 244 >gi|167749297|ref|ZP_02421424.1| hypothetical protein EUBSIR_00248 [Eubacterium siraeum DSM 15702] gi|167657742|gb|EDS01872.1| hypothetical protein EUBSIR_00248 [Eubacterium siraeum DSM 15702] Length = 457 Score = 54.5 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 44/263 (16%), Positives = 93/263 (35%), Gaps = 31/263 (11%) Query: 87 KWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEE 146 K L + + + + +C+ C+L C +C+ T + Sbjct: 76 KMLF-----TEDDYEQYAAMAMKAPIK-AMCLHVSHDCNLRCKYCFAQTGDFGGD----- 124 Query: 147 ILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD 206 R L+ G + ++ ++ S R+ + G GEPL +D V +++ A Sbjct: 125 --------RMLMKPETGKKAMDFLIKHSANRENLEVDFFG-GEPLMAWDTVVETVKYARS 175 Query: 207 SMGLSFSKRRITLSTSGFVPNIARV----GEEIGVMLAISLHAVSNDLRNILVPINRKYP 262 R T++T+G + + ++ E +L++ ND NI N K Sbjct: 176 IEKQHGKNFRFTITTNGMLLDDEKIDYINKEMSNCVLSLDGRKEVND--NIRPTPNGKGS 233 Query: 263 LEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP 322 ++++ + + K D D L++ + G ++++ P P Sbjct: 234 YDIIVPKYQKLVAGRGTKDYYVRGTFTKYNLDFANDVLHISDL--GFE-QLSVEPVVTDP 290 Query: 323 GCEY--LCSDQKDIVTFSECIKR 343 Y SD I + +++ Sbjct: 291 EMPYAITESDLPTIFAEYDRLEK 313 >gi|218709044|ref|YP_002416665.1| pyruvate formate lyase-activating enzyme 1 [Vibrio splendidus LGP32] gi|218322063|emb|CAV18128.1| Pyruvate formate-lyase 1-activating enzyme [Vibrio splendidus LGP32] Length = 246 Score = 54.5 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 39/246 (15%), Positives = 84/246 (34%), Gaps = 50/246 (20%) Query: 123 GCSLTCSFCYTGT-----QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C+ +T EEI+ + R + G G Sbjct: 29 GCLMRCMYCHNRDTWELHDGKE--VTVEEIINEAKSYRHFMKASGGGITCSG-------- 78 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 GE + + V+ A+ + G+ L T+G++ V +E V Sbjct: 79 ----------GEAMLQPEFVRDFFR-AAQAEGI-----HTCLDTNGYIRKHTEVVDE--V 120 Query: 238 MLAISLHAVS-NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 + A L + +R+ + +D R+ + ++ YV++ G D+P Sbjct: 121 LEASDLVMLDLKHMRDEIHHDFIGVSNRRTLDFARYLHKI--GKKTWIRYVIVPGYTDTP 178 Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIK 342 DA L + +K + K+ L+P++ ++ ++ + + Sbjct: 179 EDAHLLGEFIKDMDNIEKVELLPYHKLGAHKWEALGHDYPLEGTNPPSKEKMDEIVAILS 238 Query: 343 RSGYSS 348 + + Sbjct: 239 QYHSNV 244 >gi|86148860|ref|ZP_01067118.1| pyruvate formate-lyase 1 activating enzyme [Vibrio sp. MED222] gi|85833353|gb|EAQ51553.1| pyruvate formate-lyase 1 activating enzyme [Vibrio sp. MED222] Length = 246 Score = 54.5 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 39/246 (15%), Positives = 84/246 (34%), Gaps = 50/246 (20%) Query: 123 GCSLTCSFCYTGT-----QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C+ +T EEI+ + R + G G Sbjct: 29 GCLMRCMYCHNRDTWDLHDGKE--VTVEEIINEAKSYRHFMKASGGGITCSG-------- 78 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 GE + + V+ A+ + G+ L T+G++ V +E V Sbjct: 79 ----------GEAMLQPEFVRDFFR-AAQAEGI-----HTCLDTNGYIRKHTEVVDE--V 120 Query: 238 MLAISLHAVS-NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 + A L + +R+ + +D R+ + ++ YV++ G D+P Sbjct: 121 LEASDLVMLDLKHMRDEIHHDFIGVSNRRTLDFARYLHKI--GKKTWIRYVIVPGYTDTP 178 Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIK 342 DA L + +K + K+ L+P++ ++ ++ + + Sbjct: 179 EDAHLLGEFIKDMDNIEKVELLPYHKLGAHKWEALGHDYPLEGTNPPSKEKMDEIVAILS 238 Query: 343 RSGYSS 348 + + Sbjct: 239 QYHSNV 244 >gi|291556614|emb|CBL33731.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Eubacterium siraeum V10Sc8a] Length = 457 Score = 54.1 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 44/263 (16%), Positives = 93/263 (35%), Gaps = 31/263 (11%) Query: 87 KWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEE 146 K L + + + + +C+ C+L C +C+ T + Sbjct: 76 KMLF-----TEDDYEQYAAMAMKAPIK-AMCLHVSHDCNLRCKYCFAQTGDFGGD----- 124 Query: 147 ILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD 206 R L+ G + ++ ++ S R+ + G GEPL +D V +++ A Sbjct: 125 --------RMLMKPETGKKAMDFLIKHSANRENLEVDFFG-GEPLMAWDTVVETVKYARS 175 Query: 207 SMGLSFSKRRITLSTSGFVPNIARV----GEEIGVMLAISLHAVSNDLRNILVPINRKYP 262 R T++T+G + + ++ E +L++ ND NI N K Sbjct: 176 IEKQHGKNFRFTITTNGMLLDDEKIDYINKEMSNCVLSLDGRKEVND--NIRPTPNGKGS 233 Query: 263 LEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP 322 ++++ + + K D D L++ + G ++++ P P Sbjct: 234 YDIIVPKYQKLVAGRGTKDYYVRGTFTKYNLDFANDVLHISDL--GFE-QLSVEPVVTDP 290 Query: 323 GCEY--LCSDQKDIVTFSECIKR 343 Y SD I + +++ Sbjct: 291 EMPYAITESDLPTIFAEYDRLEK 313 >gi|90412861|ref|ZP_01220861.1| putative pyruvate formate-lyase 1 activating enzyme [Photobacterium profundum 3TCK] gi|90326220|gb|EAS42647.1| putative pyruvate formate-lyase 1 activating enzyme [Photobacterium profundum 3TCK] Length = 246 Score = 54.1 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 40/243 (16%), Positives = 80/243 (32%), Gaps = 44/243 (18%) Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC + C +C+ T R ++ EEI+ + + R + G G I Sbjct: 29 GCLMRCQYCHNRDTWDLHDGREVSVEEIMKEAVSYRHFMKASGGGVTASGGEAMLQPEFI 88 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 + E + D+ G K I V + ++ Sbjct: 89 RDFFRAAQAEG----------IHTCLDTNGY-IRKH---------TDVIDEVLDATD-LV 127 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 + L + + + LV ++ K ++D R+ ++ YV++ G D + A Sbjct: 128 MLDLKQMDDTVHQELVGVSNK----RVLDFARYL--HKRGQKTWIRYVIVPGYTDDEQSA 181 Query: 300 LNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKRSG 345 NL +K + KI L+P++ ++ ++ + E I G Sbjct: 182 HNLGAFIKDMDNIEKIELLPYHQLGEHKWDAMGYDYPLSGVQPPSKETMEKMKEIISSYG 241 Query: 346 YSS 348 + Sbjct: 242 HKV 244 >gi|163802103|ref|ZP_02195999.1| pyruvate formate-lyase 1 activating enzyme [Vibrio sp. AND4] gi|159174244|gb|EDP59052.1| pyruvate formate-lyase 1 activating enzyme [Vibrio sp. AND4] Length = 246 Score = 54.1 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 34/249 (13%), Positives = 81/249 (32%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T EEI+ + R + G G Sbjct: 29 GCLMRCKYCHNRDTWDTHDGKE--VTVEEIIAEAKTYRHFMNASGGGITCSG-------- 78 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN----IARVGE 233 GE + + V+ A L T+G+V I V + Sbjct: 79 ----------GEAMLQPEFVRDFFRAAKAE------GIHTCLDTNGYVRKHTEVIDEVLD 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L + ++ + ++ + ++D R+ + ++ YV++ G Sbjct: 123 ATD-LVMLDLKHMKDETHQEFIGVSNR----RVLDFARYLHKV--GQKTWIRYVVVPGYT 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSE 339 D P A L + ++ + K+ L+P++ ++ ++ + Sbjct: 176 DEPEAAHMLGEFIENMDNIEKVELLPYHKLGAHKWEALGIEYPLEGVNPPSKETMDEIQS 235 Query: 340 CIKRSGYSS 348 + + + Sbjct: 236 ILSQYHPNV 244 >gi|289804622|ref|ZP_06535251.1| ribosomal RNA large subunit methyltransferase N [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 39 Score = 54.1 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Query: 342 KRSGYSSPIRTPRGLDILAACGQLKSLS-KRIPKVPRQE 379 G+++ +R RG DI AACGQL R + R+ Sbjct: 1 MSYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKR 39 >gi|24374440|ref|NP_718483.1| pyruvate formate lyase-activating enzyme 1 [Shewanella oneidensis MR-1] gi|24349016|gb|AAN55927.1|AE015730_4 pyruvate formate-lyase 1 activating enzyme [Shewanella oneidensis MR-1] Length = 246 Score = 54.1 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 40/249 (16%), Positives = 83/249 (33%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + + +E++ Q++ R P + G V S G Sbjct: 29 GCLMRCQYCHNRDTWDLDGGKE--VQVDELMSQIISYR------PFLDASNGGVTASGGE 80 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 I + + K+ G+ L T+GFV P I + + Sbjct: 81 AILQAEFVA---------ELFKACK----KEGI-----HTCLDTNGFVRKYTPVIDELLD 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++L + + +++D L ++ L+ Y N YV++ G Sbjct: 123 HTDLVL-LDIKQMNDDKHIELTKVSNHRTLQ-----FAEYLAKRNQ-PTWIRYVVVGGFT 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSE 339 D AL L + +K + K+ L+P++ ++ ++ + Sbjct: 176 DDEASALQLAEFIKPMKNIEKVELLPYHELGKHKWEAMGESYQLDGVAPPSRETMEKIKA 235 Query: 340 CIKRSGYSS 348 G ++ Sbjct: 236 VFSSQGINA 244 >gi|291087012|ref|ZP_06345142.2| radical SAM domain protein [Clostridium sp. M62/1] gi|291076635|gb|EFE13999.1| radical SAM domain protein [Clostridium sp. M62/1] Length = 462 Score = 54.1 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 82/227 (36%), Gaps = 27/227 (11%) Query: 108 IPEKSRGT----LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163 I K R T LC+ C+L C +C+ E R L + Sbjct: 83 IDFKKRKTVVKALCLHIAHDCNLACRYCFAEE---------GE-----YHGRRALMTYEV 128 Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223 + ++ + G +I+ V GEPL N+D VK+ ++ K R TL+T+G Sbjct: 129 GKKALDFLVANSGNRINLEVDFFGGEPLMNWDVVKQLVAYGRSLEKPHNKKFRFTLTTNG 188 Query: 224 FV--PNIARV--GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279 + I E V+L++ ND + N K ++++ + + L Sbjct: 189 VLLNDEIMEFCNKEMSNVVLSLDGRKEVND--RMRPFRNGKGSYDLIVPKFQKFAKLRAD 246 Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 R + D D L+ + G K+++ P P Y Sbjct: 247 RDYFVRGTFTRNNLDFADDVLHFADL--GFE-KMSIEPVVAAPEEPY 290 >gi|197303668|ref|ZP_03168705.1| hypothetical protein RUMLAC_02395 [Ruminococcus lactaris ATCC 29176] gi|197297188|gb|EDY31751.1| hypothetical protein RUMLAC_02395 [Ruminococcus lactaris ATCC 29176] Length = 464 Score = 54.1 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 73/195 (37%), Gaps = 20/195 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L C +C+ E + R+L+ G + ++ +V S Sbjct: 107 ALCLHIAHDCNLACQYCFAEE---------GEYHGR----RALMSYEVGKKALDFLVANS 153 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARV- 231 R+ + G GEPL N+ VK+ ++ + R TL+T+G + + Sbjct: 154 GSRRNLEVDFFG-GEPLMNWKVVKELVAYGRELEKQYDKHFRFTLTTNGVLLNEEVQEFV 212 Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 E V+L++ ND + N K ++++ + N ++ + Sbjct: 213 NREMDNVVLSLDGRKEVND--RMRPFRNGKGSYDLIVPKFQKLAESRNQQKYYIRGTFTR 270 Query: 291 GINDSPRDALNLIKI 305 D +D + + Sbjct: 271 NNLDFSKDVEHFADL 285 >gi|307243816|ref|ZP_07525947.1| radical SAM domain protein [Peptostreptococcus stomatis DSM 17678] gi|306492819|gb|EFM64841.1| radical SAM domain protein [Peptostreptococcus stomatis DSM 17678] Length = 457 Score = 54.1 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 69/197 (35%), Gaps = 23/197 (11%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC++ C+L C +C+ L+ G + ++ ++ S Sbjct: 95 ALCLNVAHDCNLKCKYCFAKQGDFGG-------------KAELMPLEVGKKALDYLIANS 141 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSI---ASDSMGLSFSKRRITLSTSGFVPNIAR- 230 R+ I G GEPL N+ VK+ + G + R T++T+G + + + Sbjct: 142 GNRRNLEIDFFG-GEPLMNWPVVKELVKYGREVEKPAGKNI---RFTITTNGVLLDDEKI 197 Query: 231 -VGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF-EYVM 288 E + +SL + ++ +N K ++++ + + + Sbjct: 198 DFINEHMHNVVLSLDGRKDVNDSMRPTVNDKGSYDIIVPKFQKLVSQRPKDKYYYVRGTF 257 Query: 289 LKGINDSPRDALNLIKI 305 + D D + + Sbjct: 258 TRDNLDFSEDVKHFADL 274 >gi|325679260|ref|ZP_08158847.1| six-Cys-in-45 modification radical SAM protein [Ruminococcus albus 8] gi|324109046|gb|EGC03275.1| six-Cys-in-45 modification radical SAM protein [Ruminococcus albus 8] Length = 457 Score = 54.1 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 74/224 (33%), Gaps = 27/224 (12%) Query: 87 KWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEE 146 K L + +V P K +C+ C+L C +C+ T E Sbjct: 74 KILFSEDD---YEKFALASVASPIK---AMCLHVSHDCNLRCKYCFASTGDF------GE 121 Query: 147 ILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD 206 R L+ I+ ++ S GRK + G GEP NFD V K++ A Sbjct: 122 -------GRKLMDFETAKRAIDFLIEKSYGRKFLEVDFFG-GEPSMNFDVVMKTVEYARS 173 Query: 207 SMGLSFSKRRITLSTSG--FVPNIARV--GEEIGVMLAISLHAVSNDLRNILVPINRKYP 262 R T +T+G ++ E V+L+I ND + V Y Sbjct: 174 REKECDKVFRFTTTTNGMHLTDDMIDFINREMYNVVLSIDGRKEVNDRVRVRVDGTGCYD 233 Query: 263 LEMLIDACRHYPGLSNARRITFEYVMLKGIN-DSPRDALNLIKI 305 L + + + + N D D ++L + Sbjct: 234 L--ITKNFKRLVDKRGNDKDWYVRGTYTKYNLDFSEDVMHLYDL 275 >gi|119946914|ref|YP_944594.1| pyruvate formate lyase-activating enzyme 1 [Psychromonas ingrahamii 37] gi|119865518|gb|ABM04995.1| pyruvate formate-lyase activating enzyme [Psychromonas ingrahamii 37] Length = 246 Score = 54.1 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 46/246 (18%), Positives = 87/246 (35%), Gaps = 56/246 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + ++ EE++ ++L R + G + G Sbjct: 29 GCLMRCQYCHNRDTWDTEAGKE--MSVEELMAELLQYRHYMEASGGGITVSG-------- 78 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI----ARVGE 233 GE + + K++ A G+ L T+GFV I V + Sbjct: 79 ----------GEAMLQPE-FIKAIFEACHLEGI-----HTCLDTNGFVRRIDDTVKSVLD 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++L + + + ND L ++ KY LE HY + + YV+L G Sbjct: 123 HTDLVL-LDIKQMDNDKHIDLTHVSNKYTLE-----FAHYLAERHQ-AVYLRYVVLPGYT 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSE 339 D+ D L K +K + KI L+P++ ++ ++ + E Sbjct: 176 DAIDDIHALGKFIKPMKNIEKIELLPYHELGKHKWTAMGEIYPLDGVSPPTRESMDKIKE 235 Query: 340 CIKRSG 345 + + Sbjct: 236 ILLQYH 241 >gi|254508526|ref|ZP_05120644.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus 16] gi|219548551|gb|EED25558.1| pyruvate formate-lyase 1-activating enzyme [Vibrio parahaemolyticus 16] Length = 220 Score = 54.1 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 36/249 (14%), Positives = 78/249 (31%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T +EI+ + R + G Sbjct: 3 GCLMRCMYCHNRDTWDTHGGKE--VTVDEIINEAKSYRHFMNASGGG------------- 47 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN----IARVGE 233 V GE + + V+ A L T+G++ I V E Sbjct: 48 -----VTCSGGEAMLQPEFVRDFFRAAQSE------GIHTCLDTNGYIRKHTDVIDEVLE 96 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 +++ H + + N++ +D R+ L ++ YV++ G Sbjct: 97 ATDLVMLDLKHMKDEIHHDFIGVSNKR-----TLDFARYLHKL--GQKTWIRYVVVPGYT 149 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSE 339 D A L + +K + KI L+P++ ++ ++ + Sbjct: 150 DDEEAAHMLGEFIKDMDNIEKIELLPYHKLGAHKWEALGHDYPLEGINPPSKETMDKIVS 209 Query: 340 CIKRSGYSS 348 +++ + Sbjct: 210 ILEQYHSNV 218 >gi|255528600|ref|ZP_05395368.1| pyruvate formate-lyase activating enzyme [Clostridium carboxidivorans P7] gi|296185843|ref|ZP_06854249.1| pyruvate formate-lyase 1-activating enzyme [Clostridium carboxidivorans P7] gi|255507704|gb|EET84176.1| pyruvate formate-lyase activating enzyme [Clostridium carboxidivorans P7] gi|296049511|gb|EFG88939.1| pyruvate formate-lyase 1-activating enzyme [Clostridium carboxidivorans P7] Length = 240 Score = 53.7 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 44/264 (16%), Positives = 92/264 (34%), Gaps = 47/264 (17%) Query: 96 CIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR 155 +G E++ + + V Q GCSL C++C+ + Sbjct: 2 TLGKMHSFESMGLVDGPGIRTVVFMQ-GCSLRCAYCHNPD---------------TWNFQ 45 Query: 156 SLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR 215 P + + + G GEPL D + ++L G+ Sbjct: 46 GGTEITPEELVKKIARFKPYFKNGGGVTFSG-GEPLMQPDFLIETLK-LCKEQGI----- 98 Query: 216 RITLSTSGFVPNIARVGEEIGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY 273 T+ T+G+ + E + + + + V ++ LV ++K + + A + Sbjct: 99 HTTIDTAGYGSG--KYDEILKYTDLVLLDIKHVDDNGYKNLVGQSKK-GFDEFLQAVQ-- 153 Query: 274 PGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPW-------PGC 324 ++ +V++ GI DS L I+K I K+ L+P++ G Sbjct: 154 ---KANTKLWIRHVVVPGITDSEEHIKRLASIIKSIKNVEKVELLPYHTLGVEKYNKMGI 210 Query: 325 EYLCS-----DQKDIVTFSECIKR 343 EY S ++++ + + + Sbjct: 211 EYKLSHIDSMSKEELDKLYKILNK 234 >gi|32033950|ref|ZP_00134206.1| COG1180: Pyruvate-formate lyase-activating enzyme [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208509|ref|YP_001053734.1| pyruvate formate lyase-activating enzyme 1 [Actinobacillus pleuropneumoniae L20] gi|190150360|ref|YP_001968885.1| pyruvate formate-lyase 1-activating enzyme [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303251032|ref|ZP_07337218.1| pyruvate formate lyase-activating enzyme 1 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303253668|ref|ZP_07339806.1| pyruvate formate lyase-activating enzyme 1 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307245946|ref|ZP_07528029.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307248080|ref|ZP_07530109.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307252674|ref|ZP_07534566.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307257082|ref|ZP_07538857.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307259361|ref|ZP_07541088.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307261519|ref|ZP_07543188.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307263704|ref|ZP_07545312.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126097301|gb|ABN74129.1| pyruvate formate-lyase 1-activating enzyme [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|189915491|gb|ACE61743.1| pyruvate formate-lyase 1-activating enzyme [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302647588|gb|EFL77806.1| pyruvate formate lyase-activating enzyme 1 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302650042|gb|EFL80212.1| pyruvate formate lyase-activating enzyme 1 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306853165|gb|EFM85387.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306855478|gb|EFM87652.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306859850|gb|EFM91871.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306864453|gb|EFM96361.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306866597|gb|EFM98458.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306868802|gb|EFN00610.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306870958|gb|EFN02694.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 245 Score = 53.7 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 32/245 (13%), Positives = 83/245 (33%), Gaps = 48/245 (19%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + ++ E+++ +V+ + + G G Sbjct: 28 GCLMRCKYCHNRDTWDLDGGKE--ISVEDLMKEVVTYKHFMKATGGGVTASGGEAVLQME 85 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 + + E + D+ G + P + + E Sbjct: 86 FVRDWFRACKAEG----------IDTCLDTNGF----------VRHYSPVVDEMLEVTD- 124 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 ++ + L +++++ L+ ++ K +D R+ L+ R YV++ G D Sbjct: 125 LVMLDLKQLNDEIHQDLIGVSNK----RTLDFARYLQKLNK--RTWIRYVVVPGYTDDDD 178 Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIKR 343 A L + ++G+ K+ L+P++ ++ ++ + I+ Sbjct: 179 SAHRLGQFIQGMQNIEKVELLPYHRLGAHKWETLGYKYELEGVLPPPKETMDRLKAIIES 238 Query: 344 SGYSS 348 G++ Sbjct: 239 YGHTV 243 >gi|253990313|ref|YP_003041669.1| pyruvate formate lyase-activating enzyme 1 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781763|emb|CAQ84926.1| pyruvate formate lyase activating enzyme 1 [Photorhabdus asymbiotica] Length = 246 Score = 53.7 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 33/245 (13%), Positives = 76/245 (31%), Gaps = 48/245 (19%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + ++T EE++ + R + G G Sbjct: 29 GCLMRCLYCHNRDTWDTHGGK--DVTVEELIKEATTYRHFMNASGGGVTASGGEAILQAE 86 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 + + E + D+ G + P I + + Sbjct: 87 FVRDWFRACRAEG----------IHTCLDTNGF----------VRRYDPVIDELMDVTD- 125 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 ++ + L +++++ LV ++ LE Y N + YV++ G +D Sbjct: 126 LVMLDLKQINDEIHQKLVGVSNHRTLE-----FARYLTKRNQ-KTWIRYVVVPGWSDDDE 179 Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKR 343 A L + + KI L+P++ ++ ++ + ++ Sbjct: 180 SAHRLGEFTSDMKNIEKIELLPYHELGKHKWTTMGEEYQLEGVKPPAKETMERVKNILES 239 Query: 344 SGYSS 348 G+ Sbjct: 240 YGHKV 244 >gi|261494073|ref|ZP_05990576.1| pyruvate formate lyase-activating enzyme 1 [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496086|ref|ZP_05992496.1| pyruvate formate lyase-activating enzyme 1 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308336|gb|EEY09629.1| pyruvate formate lyase-activating enzyme 1 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310239|gb|EEY11439.1| pyruvate formate lyase-activating enzyme 1 [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 246 Score = 53.7 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 36/245 (14%), Positives = 85/245 (34%), Gaps = 48/245 (19%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T EE++ +V + + G G Sbjct: 29 GCLMRCKYCHNRDTWDLDGGKE--ITVEELMKEVTTYKHFMKATGGGVTASGGEAVLQME 86 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 + + E ++ D+ G + P + + E + Sbjct: 87 FVRDWFRACKAEG----------INTCLDTNGF----------VRHYSPVVDEMLEVTDL 126 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 +L + L +++++ LV ++ K +D R+ L+ YV++ G D Sbjct: 127 VL-LDLKQLNDEVHQDLVGVSNK----RTLDFARYLHKLNK--PTWVRYVVVPGYTDDDD 179 Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIKR 343 A L + ++G+ K+ L+P++ ++ ++D+ + I+ Sbjct: 180 SAHRLGQFIQGMDNIEKVELLPYHRLGAHKWETLGYKYELEGVMPPSKEDLERIQKIIES 239 Query: 344 SGYSS 348 G++ Sbjct: 240 YGHTV 244 >gi|37525557|ref|NP_928901.1| pyruvate formate lyase-activating enzyme 1 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784985|emb|CAE13905.1| pyruvate formate-lyase 1 activating enzyme (PFL-activating enzyme) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 246 Score = 53.4 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 40/249 (16%), Positives = 84/249 (33%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + ++T EE++ + R + G Sbjct: 29 GCLMRCLYCHNRDTWDTHGGK--DVTVEELIKEATAYRHFMNASGGG------------- 73 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 V GE + + V+ A + G+ L T+GFV P I + + Sbjct: 74 -----VTASGGEAVLQAEFVRDWFR-ACHAEGI-----HTCLDTNGFVRRYGPVIDELMD 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L +++++ LV ++ LE Y N + YV++ G + Sbjct: 123 ATD-LVMLDLKQLNDEIHQKLVGVSNHRTLE-----FARYLAKRNQ-KTWIRYVVVPGWS 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 D A L + + KI L+P++ ++ ++ + Sbjct: 176 DDNESAHKLGEFTNDMKNIEKIELLPYHELGKHKWTTMGEKYQLEGVKPPAKETMERVKN 235 Query: 340 CIKRSGYSS 348 ++ G+ Sbjct: 236 ILESYGHKV 244 >gi|302385029|ref|YP_003820851.1| Radical SAM domain protein [Clostridium saccharolyticum WM1] gi|302195657|gb|ADL03228.1| Radical SAM domain protein [Clostridium saccharolyticum WM1] Length = 464 Score = 53.4 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 72/195 (36%), Gaps = 20/195 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L C +C+ E + R+L+ G + ++ ++ S Sbjct: 107 ALCLHIAHDCNLACKYCFAEE---------GEYHGR----RALMSFEVGKKALDFLIANS 153 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARV- 231 R+ + G GEPL N+D VK+ + R T++T+G + I Sbjct: 154 GNRRNLEVDFFG-GEPLMNWDVVKQLVEYGRKKEKEYNKNFRFTMTTNGVLLNDEIMEFC 212 Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 E V+L++ ND + + K ++++ + + L + + Sbjct: 213 NREMSNVVLSLDGRKEVND--RMRPFRSGKGSYDLIVPKFQKFAQLRGTKDYYIRGTFTR 270 Query: 291 GINDSPRDALNLIKI 305 D +D L + Sbjct: 271 QNMDFAKDVLEFADL 285 >gi|297579388|ref|ZP_06941316.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae RC385] gi|297536982|gb|EFH75815.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae RC385] Length = 246 Score = 53.4 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 41/250 (16%), Positives = 85/250 (34%), Gaps = 58/250 (23%) Query: 123 GCSLTCSFCY------TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176 GC C +C+ T T R +T EEI+ + R + G G Sbjct: 29 GCLFRCKYCHNRDTWDTHTG---REVTVEEIIKEAKSYRHFMNASGGGITCSG------- 78 Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVG 232 GE + + V+ A L T+G+V P I V Sbjct: 79 -----------GEAMLQPEFVRDFFRAAKAE------GIHTCLDTNGYVRKFTPVIDEVL 121 Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 E ++ + + + +++ L+ ++ K +D R+ + ++ YV++ G Sbjct: 122 EVTD-LVMLDIKQMDDEIHQDLIGVSNK----RTLDFARYLHQI--GQKTWLRYVVVPGY 174 Query: 293 NDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFS 338 D A L + +K + KI L+P++ ++ ++ + Sbjct: 175 TDDEASAHQLGEFIKDMKNIEKIELLPYHKLGAHKWEAMGEEYPLEGVNPPSKETMDKIV 234 Query: 339 ECIKRSGYSS 348 +++ + Sbjct: 235 AILEQYHSNV 244 >gi|323703288|ref|ZP_08114939.1| Radical SAM domain protein [Desulfotomaculum nigrificans DSM 574] gi|323531753|gb|EGB21641.1| Radical SAM domain protein [Desulfotomaculum nigrificans DSM 574] Length = 450 Score = 53.4 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 43/215 (20%), Positives = 83/215 (38%), Gaps = 21/215 (9%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ + C+L C +C+ G Q LL + G I+ ++ S Sbjct: 92 ALCLHAAHDCNLRCRYCFAGQ-------------GQFGGPSGLLSEEVGRAAIDFLIEQS 138 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVG 232 RK I G GEPL NF +K+ + + K + TL+T+G + + + Sbjct: 139 GNRKHVEIDFFG-GEPLLNFKVIKELVPYGRQKAEQAGKKIKFTLTTNGVLLNQEVQQFL 197 Query: 233 EEIGVMLAISLHAVSNDLRNILVP-INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291 + + +SL ++ N + P + K +M++ + Y A + Sbjct: 198 IDNDMAAVLSLDG-RPEVHNAMRPAPSGKGSYDMVVKHFQEYVQRQPAAGYYIRGTFTRH 256 Query: 292 INDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 D +D L++ ++ G +++ P +Y Sbjct: 257 NLDFSQDVLHMAEL--GFK-DVSVEPVVAGNDTDY 288 >gi|120598447|ref|YP_963021.1| pyruvate formate lyase-activating enzyme 1 [Shewanella sp. W3-18-1] gi|146293475|ref|YP_001183899.1| pyruvate formate lyase-activating enzyme 1 [Shewanella putrefaciens CN-32] gi|120558540|gb|ABM24467.1| pyruvate formate-lyase activating enzyme [Shewanella sp. W3-18-1] gi|145565165|gb|ABP76100.1| pyruvate formate-lyase activating enzyme [Shewanella putrefaciens CN-32] gi|319426779|gb|ADV54853.1| pyruvate formate-lyase activating enzyme [Shewanella putrefaciens 200] Length = 246 Score = 53.4 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 39/249 (15%), Positives = 83/249 (33%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + + +E++ Q++ R P + G V S G Sbjct: 29 GCLMRCQYCHNRDTWDLDGGKE--VQVDELMSQIISYR------PFLDASNGGVTASGGE 80 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 I + + K+ + G L T+GFV P I + + Sbjct: 81 AILQAEFVA---------ELFKACK----NEG-----VHTCLDTNGFVRKYTPVIDELLD 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++L + + + ++ L ++ L+ Y N YV++ G Sbjct: 123 HTDLVL-LDIKHMDDEKHIELTKVSNHRTLQ-----FAEYLAKRNQ-ATWIRYVVVGGFT 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSE 339 D AL L + +K + K+ L+P++ ++ ++ + Sbjct: 176 DDEASALQLAEFIKPMKNIEKVELLPYHELGKHKWEAMGENYQLDGVSPPSRETMEKIKA 235 Query: 340 CIKRSGYSS 348 + G ++ Sbjct: 236 VFVQQGINA 244 >gi|307107693|gb|EFN55935.1| hypothetical protein CHLNCDRAFT_57698 [Chlorella variabilis] Length = 332 Score = 53.4 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 40/248 (16%), Positives = 70/248 (28%), Gaps = 53/248 (21%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C FC N + + + S G I Sbjct: 105 GCGLRCVFCS--------NPDTWHMA----RGKLTSSKDLAKKLERVKPYLSQGDHKGGI 152 Query: 183 VMMGMGEPLCNFD----NVKKS----LSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234 + G GEPL + + ++ L+ D+ G +V Sbjct: 153 TISG-GEPLLQPEFTASVLMEAHTRGLTTCIDTTGQGMKHSHW-----------DKVLPH 200 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 + L + + + + + P +D YVML G D Sbjct: 201 LDYALFC-IKSPIPEKYEWITKR-KIGPALGFVDELER-----RQIPYWLRYVMLPGKTD 253 Query: 295 SPRDALNLIKILKGIPAK--INLIPFN-------PWPGCEY-----LCSDQKDIVTFSEC 340 P D LI+ + + I ++P++ G EY +++ F Sbjct: 254 QPEDVAALIQFCRNKRSMQAIEVLPYHLLGVEKWASEGKEYPLTGMSSPSAEEVNAFLAP 313 Query: 341 IKRSGYSS 348 +K +G Sbjct: 314 LKEAGIPV 321 >gi|170754784|ref|YP_001782823.1| glycyl-radical enzyme activating family protein [Clostridium botulinum B1 str. Okra] gi|169119996|gb|ACA43832.1| glycyl-radical enzyme activating family protein [Clostridium botulinum B1 str. Okra] Length = 300 Score = 53.0 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 43/275 (15%), Positives = 94/275 (34%), Gaps = 55/275 (20%) Query: 107 YIPEKSRGTLCVSSQVGCSLT---------------CSFCYTGTQKLVRNLTAEEILLQV 151 + + R T C C C+FC T N A E + + Sbjct: 48 IMFFEERCTACGICVKRCPQKIITMKNNIPMVDEGKCNFCGKCTN-FCPN-NAREYVGKD 105 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS-IASDSMGL 210 L ++ ++ + E + G GEP+ + D ++ I + Sbjct: 106 LTSQEIIKEIIKDEVFYEQSGGG-------VTFSG-GEPMLHAD----FINGILEECKTR 153 Query: 211 SFSKRRITLSTSGFVP--NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 T+ TSG+V +V +++G+ L L +++N++ + + ++ Sbjct: 154 GI---HTTIDTSGYVSWDKFEKVRDKVGLFL-YDLKSMNNEIHKKYTGVENTI-ILENLE 208 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI-PAKINLIPFNPWPGCEYL 327 Y I ++ +ND+ ++ IK + + ++NL+P++ +Y Sbjct: 209 LLSKY-----GHNIYLRIPIINDVNDNNKNIDETIKFISKLHLIQVNLLPYHKMGMDKYK 263 Query: 328 C------------SDQKDIVTFSECIKRSGYSSPI 350 + + +E K++G I Sbjct: 264 RLKMEYKLTGEEKPSDEKMNEIAEKFKQAGIKVKI 298 >gi|126174881|ref|YP_001051030.1| pyruvate formate lyase-activating enzyme 1 [Shewanella baltica OS155] gi|304411937|ref|ZP_07393548.1| pyruvate formate-lyase activating enzyme [Shewanella baltica OS183] gi|307303295|ref|ZP_07583050.1| pyruvate formate-lyase activating enzyme [Shewanella baltica BA175] gi|125998086|gb|ABN62161.1| pyruvate formate-lyase activating enzyme [Shewanella baltica OS155] gi|304349797|gb|EFM14204.1| pyruvate formate-lyase activating enzyme [Shewanella baltica OS183] gi|306913655|gb|EFN44077.1| pyruvate formate-lyase activating enzyme [Shewanella baltica BA175] Length = 246 Score = 53.0 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 32/245 (13%), Positives = 75/245 (30%), Gaps = 48/245 (19%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + + +E++ Q++ R L G G Sbjct: 29 GCLMRCQYCHNRDTWDLDGGKE--VLVDELMSQIISYRPFLDASNGGVTASGGEAILQAE 86 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 ++ + E + D+ G + P I + + + Sbjct: 87 FVAELFTACQQEG----------IHTCLDTNGF----------VRKYTPVIDELLDHTDL 126 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 +L + + + ++ L ++ L+ Y N YV++ G D Sbjct: 127 VL-LDIKHMDDEKHIELTKVSNHRTLQ-----FAQYLAERNQ-ATWIRYVVVGGFTDDEA 179 Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIKR 343 AL L + +K + K+ L+P++ ++ ++ + Sbjct: 180 SALQLAEFIKPMKNIEKVELLPYHELGKHKWEAMGESYQLDGISPPSRETMEKIKAVFVG 239 Query: 344 SGYSS 348 G ++ Sbjct: 240 QGINA 244 >gi|256028011|ref|ZP_05441845.1| Fe-S oxidoreductase [Fusobacterium sp. D11] gi|260495719|ref|ZP_05815841.1| iron-sulfur dehydrogenase [Fusobacterium sp. 3_1_33] gi|289765954|ref|ZP_06525332.1| fe-s oxidoreductase [Fusobacterium sp. D11] gi|260196677|gb|EEW94202.1| iron-sulfur dehydrogenase [Fusobacterium sp. 3_1_33] gi|289717509|gb|EFD81521.1| fe-s oxidoreductase [Fusobacterium sp. D11] Length = 284 Score = 53.0 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 39/237 (16%), Positives = 83/237 (35%), Gaps = 38/237 (16%) Query: 124 CSLTCSFC---YTGTQKLVRN--LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 C+L C FC T +L R EIL ++ + Sbjct: 28 CNLNCIFCECGATKKIQLKRQRFKDMNEILNEIQSVLKDIKPDY---------------- 71 Query: 179 ISNIVMMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236 + G GEP + D N+ K++ G +I L T+ + +V +E+ Sbjct: 72 ---VTFSGSGEPTLSLDLGNISKAIKKDLKFKG------KICLITNSLLLADKQVIKELE 122 Query: 237 V--MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 ++ +L+ + D+ +V + + ++ + + + +I E +L+ IND Sbjct: 123 YIDLIIPTLNTLKQDIFEKIVRPDYRTSVDEIRKGFINLNDSNYKGKIWIEIFILENIND 182 Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWP----GCEYLCSDQKDIVTFSECIKRSGYS 347 S + + + L + + I N + I+ + ++ +G Sbjct: 183 SEENFIEIANFLNSENIRYDKIQLNTIDRVGAERDLKAISFDKILKAKKILEENGLH 239 >gi|306820795|ref|ZP_07454420.1| radical SAM domain protein [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551185|gb|EFM39151.1| radical SAM domain protein [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 457 Score = 53.0 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 18/153 (11%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 +C+ C+L CS+C+ + + ++ G + ++ +V S Sbjct: 96 AMCLHVAHDCNLRCSYCFASQGDFGGD-------------KEIMSLEVGKKALDYLVEHS 142 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIARV 231 R+ + G GEPL NF+ VK+ + + G R T++T+G + I + Sbjct: 143 GNRRNLEVDFFG-GEPLMNFEVVKQLVDYGNKIAGEKNKNFRFTITTNGVLLSDDKIEYI 201 Query: 232 GEEIG-VMLAISLHAVSNDLRNILVPINRKYPL 263 E + V+L++ ND L+ Y L Sbjct: 202 NENMHNVVLSLDGRKEINDANRPLINGKGSYDL 234 >gi|218546617|gb|ACK98957.1| predicted Fe-S-cluster redox enzyme [Aeromonas sobria] Length = 46 Score = 53.0 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%) Query: 346 YSSPIRTPRGLDILAACGQLKSLS-KRIPKVPRQEMQITG 384 + +R RG DI AACGQL R + + MQ G Sbjct: 1 LTVIVRKTRGDDIDAACGQLVGEVIDRTKRTMKNRMQQDG 40 >gi|322515207|ref|ZP_08068206.1| pyruvate formate-lyase activating enzyme [Actinobacillus ureae ATCC 25976] gi|322118817|gb|EFX91018.1| pyruvate formate-lyase activating enzyme [Actinobacillus ureae ATCC 25976] Length = 245 Score = 53.0 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 34/248 (13%), Positives = 81/248 (32%), Gaps = 54/248 (21%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C +C+ R+ E + + Sbjct: 28 GCLMRCKYCH------NRDT---------WDLDGGKEISVEYLMKEVVTYKHFMKATGGG 72 Query: 183 VMMGMGEPLCNFDNV--------KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234 V GE + + V + + D+ G + P + + E Sbjct: 73 VTASGGEAVLQMEFVRDWFRACKVEGIDTCLDTNGF----------VRHYSPVVDEMLEV 122 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 ++ + L +++++ L+ ++ K +D R+ L+ R YV++ G D Sbjct: 123 TD-LVMLDLKQLNDEIHQDLIGVSNK----RTLDFARYLQKLNK--RTWVRYVVVPGYTD 175 Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSEC 340 A L + ++G+ K+ L+P++ ++ ++D+ + Sbjct: 176 DDDSAHRLGQFIQGMQNIEKVELLPYHRLGAHKWETLGYKYELDGVLPPPKEDLERIQKI 235 Query: 341 IKRSGYSS 348 I+ G++ Sbjct: 236 IESYGHTV 243 >gi|154498075|ref|ZP_02036453.1| hypothetical protein BACCAP_02056 [Bacteroides capillosus ATCC 29799] gi|150273065|gb|EDN00222.1| hypothetical protein BACCAP_02056 [Bacteroides capillosus ATCC 29799] Length = 460 Score = 53.0 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 46/246 (18%), Positives = 78/246 (31%), Gaps = 32/246 (13%) Query: 89 LLRFPARCIGGPVEIETVYI-PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147 LL I V + E LC+ C+L C +C+ T Sbjct: 80 LLFVEDDYIDPAA---AVAMQREAPIKALCLHVSHDCNLRCKYCFASTGDF----GTGH- 131 Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207 R + I+ ++ S R+ + G GEPL D VK+++ A Sbjct: 132 -------RMTMDFETAKRAIDFVIERSGKRRNIEVDFFG-GEPLMAMDTVKRTVEYARSI 183 Query: 208 MGLSFSKRRITLSTSGF------VPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKY 261 R T++T+G + I R E +L+I ND + +N K Sbjct: 184 EKEHGKCFRFTITTNGVLLNDENIEYINR--EMSNAVLSIDGRKEVND--RMRPTVNGKG 239 Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI-LKGIPAKINLIPFNP 320 ++++ R + + D D +++ + K I P Sbjct: 240 SYDVIVPKFRKLIAGRGDKDYYLRGTFTRDNLDFAGDVMHMASLGAKNISV----EPVVG 295 Query: 321 WPGCEY 326 P Y Sbjct: 296 GPEDPY 301 >gi|113969835|ref|YP_733628.1| pyruvate formate lyase-activating enzyme 1 [Shewanella sp. MR-4] gi|113884519|gb|ABI38571.1| pyruvate formate-lyase activating enzyme [Shewanella sp. MR-4] Length = 246 Score = 53.0 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 40/249 (16%), Positives = 82/249 (32%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + + +E++ Q++ R P + G V S G Sbjct: 29 GCLMRCQYCHNRDTWDLDGGKE--VQVDELMSQIISYR------PFLDASNGGVTASGGE 80 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 I + + K+ G+ L T+GFV P I + + Sbjct: 81 AILQAEFVA---------ELFKACK----KEGI-----HTCLDTNGFVRKYTPVIDELLD 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++L + + +++D L ++ L+ Y N YV++ G Sbjct: 123 NTDLVL-LDIKQMNDDKHIELTKVSNHRTLQ-----FAEYLAKRNQ-PTWIRYVVVGGFT 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSE 339 D AL L + +K + K+ L+P++ ++ + + Sbjct: 176 DDEASALQLAEFIKPMKNIEKVELLPYHELGKHKWEAMGESYQLDGVAPPSRDTMEKIKA 235 Query: 340 CIKRSGYSS 348 G ++ Sbjct: 236 VFSSQGINA 244 >gi|114047065|ref|YP_737615.1| pyruvate formate lyase-activating enzyme 1 [Shewanella sp. MR-7] gi|113888507|gb|ABI42558.1| pyruvate formate-lyase activating enzyme [Shewanella sp. MR-7] Length = 246 Score = 53.0 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 40/249 (16%), Positives = 82/249 (32%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + + +E++ Q++ R P + G V S G Sbjct: 29 GCLMRCQYCHNRDTWDLDGGKE--VQVDELMSQIISYR------PFLDASNGGVTASGGE 80 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 I + + K+ G+ L T+GFV P I + + Sbjct: 81 AILQAEFVA---------ELFKACK----KEGI-----HTCLDTNGFVRKYTPVIDELLD 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++L + + +++D L ++ L+ Y N YV++ G Sbjct: 123 NTDLVL-LDIKQMNDDKHIELTKVSNHRTLQ-----FAEYLAKRNQ-PTWIRYVVVGGFT 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSE 339 D AL L + +K + K+ L+P++ ++ + + Sbjct: 176 DDEASALQLAEFIKPMKNIEKVELLPYHELGKHKWEAMGESYQLDGVAPPSRDTMEKIKA 235 Query: 340 CIKRSGYSS 348 G ++ Sbjct: 236 VFSSQGINA 244 >gi|117920002|ref|YP_869194.1| pyruvate formate lyase-activating enzyme 1 [Shewanella sp. ANA-3] gi|117612334|gb|ABK47788.1| pyruvate formate-lyase activating enzyme [Shewanella sp. ANA-3] Length = 246 Score = 53.0 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 40/249 (16%), Positives = 82/249 (32%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + + +E++ Q++ R P + G V S G Sbjct: 29 GCLMRCQYCHNRDTWDLDGGKE--VQVDELMSQIISYR------PFLDASNGGVTASGGE 80 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 I + + K+ G+ L T+GFV P I + + Sbjct: 81 AILQAEFVA---------ELFKACK----KEGI-----HTCLDTNGFVRKYTPVIDELLD 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++L + + +++D L ++ L+ Y N YV++ G Sbjct: 123 NTDLVL-LDIKQMNDDKHIELTKVSNHRTLQ-----FAEYLAKRNQ-PTWIRYVVVGGFT 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSE 339 D AL L + +K + K+ L+P++ ++ + + Sbjct: 176 DDEASALQLAEFIKPMKNIEKVELLPYHELGKHKWEAMGETYQLDGVAPPSRDTMEKIKA 235 Query: 340 CIKRSGYSS 348 G ++ Sbjct: 236 VFSSQGINA 244 >gi|225569142|ref|ZP_03778167.1| hypothetical protein CLOHYLEM_05222 [Clostridium hylemonae DSM 15053] gi|225161941|gb|EEG74560.1| hypothetical protein CLOHYLEM_05222 [Clostridium hylemonae DSM 15053] Length = 302 Score = 53.0 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 41/288 (14%), Positives = 88/288 (30%), Gaps = 50/288 (17%) Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVR-------- 140 LL+ + + + R C S V C G R Sbjct: 28 LLKCLWCHNPETQCFKPQLLCDSERCAGCGSCAVVCPQNAVREEAGKMVTDRKLCTGCGT 87 Query: 141 -----NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195 NL E+ + L+ + E V ++ + + D Sbjct: 88 CVDSCNLNLREVAGKEYTVSELVKELRKDEMFYEESGGGVTLSGGEVM-------MADMD 140 Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVP--NIARVGEEIGVMLAISLHAVSNDLRNI 253 V++ + + S + + T G P N R+ L + + N++ Sbjct: 141 YVEELVKRL---DRMGIS---VAIDTCGQAPYENFERLLPYTDTFL-YDIKTMDNEIHKK 193 Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313 + + E +++ S RI +++ +N + D +I+ L+ ++ Sbjct: 194 YMGMGN----EQILENLERIS--SKGARIYIRIPVIREVNGTKEDMEEIIRYLREKQIRV 247 Query: 314 ---NLIPFNPWPGCEYLC------------SDQKDIVTFSECIKRSGY 346 NL+P++ +Y +++ F K+SG+ Sbjct: 248 ANINLLPYHNTGSGKYEKLGLTYGGTKLHAPSGEEMEQFVTLFKQSGF 295 >gi|307250286|ref|ZP_07532239.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857668|gb|EFM89771.1| Pyruvate formate-lyase 1-activating enzyme [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 245 Score = 53.0 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 32/245 (13%), Positives = 83/245 (33%), Gaps = 48/245 (19%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + ++ E+++ +V+ + + G G Sbjct: 28 GCLMRCKYCHNRDTWDLDGGKE--ISVEDLMKEVVTYKHFMKATGGGVTASGGEAVLQME 85 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 + + E + D+ G + P + + E Sbjct: 86 FVRDWFRACKAEG----------IDTCLDTNGF----------VRHYSPVVDEMLEVTD- 124 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 ++ + L +++++ L+ ++ K +D R+ L+ R YV++ G D Sbjct: 125 LVMLDLKQLNDEIHQDLIGVSNK----RTLDFARYLQKLNK--RTWIRYVVVPGYTDDDD 178 Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIKR 343 A L + ++G+ K+ L+P++ ++ ++ + I+ Sbjct: 179 SAHRLGQFIQGMQNIEKVELLPYHRLGAHKWETLGYKYELEGVLPPPKEMMDRLKAIIES 238 Query: 344 SGYSS 348 G++ Sbjct: 239 YGHTV 243 >gi|54309906|ref|YP_130926.1| pyruvate formate lyase-activating enzyme 1 [Photobacterium profundum SS9] gi|46914345|emb|CAG21124.1| putative pyruvate formate-lyase 1 activating enzyme [Photobacterium profundum SS9] Length = 246 Score = 53.0 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 40/245 (16%), Positives = 80/245 (32%), Gaps = 48/245 (19%) Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC + C +C+ T R ++ EEI+ + + R + G G I Sbjct: 29 GCLMRCQYCHNRDTWDLHDGREISVEEIMKEAVSYRHFMKASGGGVTASGGEAMLQPEFI 88 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM- 238 + E N + D+ G + V E + Sbjct: 89 RDFFRAAQAE---N-------IHTCLDTNGY-------------IRKHTDVVDEVLDATD 125 Query: 239 -LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 + + L + + + LV ++ K ++D R+ ++ YV++ G D + Sbjct: 126 LVMLDLKQMDDTIHQELVGVSNK----RVLDFARYL--HKRGQKTWIRYVIVPGYTDDEQ 179 Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKR 343 A NL +K + KI L+P++ ++ ++ + E I Sbjct: 180 SAHNLGAFIKDMDNIEKIELLPYHQLGEHKWDAMGYDYPLSGVQPPSKETMEKMKEIISS 239 Query: 344 SGYSS 348 G+ Sbjct: 240 YGHKV 244 >gi|169350747|ref|ZP_02867685.1| hypothetical protein CLOSPI_01520 [Clostridium spiroforme DSM 1552] gi|169292610|gb|EDS74743.1| hypothetical protein CLOSPI_01520 [Clostridium spiroforme DSM 1552] Length = 461 Score = 52.6 bits (125), Expect = 9e-05, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 68/198 (34%), Gaps = 26/198 (13%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L CS+C+ K E R+L+ G + ++ +V S Sbjct: 101 ALCLHVAHTCNLNCSYCFASQGKYK-----GE--------RALMSFEVGKQALDFLVENS 147 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSL---SIASDSMGLSFSKRRITLSTSGFV--PNIA 229 R + G GEPL NF VK + +F R TL+T+G + + Sbjct: 148 GTRHNLEVDFFG-GEPLMNFQVVKDLVAYARSIEKEKNKNF---RFTLTTNGMLIDDEVI 203 Query: 230 RVG--EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 E V+L++ +D V K E ++ + + Sbjct: 204 EFANRECSNVVLSLDGRKEIHD--RYRVDYAGKGSWEKIVPKFQKLVEARGGKDYYMRGT 261 Query: 288 MLKGINDSPRDALNLIKI 305 D +D ++ + Sbjct: 262 FTHANPDFLKDVQTMLDL 279 >gi|148977582|ref|ZP_01814161.1| pyruvate formate lyase activating enzyme 1 [Vibrionales bacterium SWAT-3] gi|145963233|gb|EDK28500.1| pyruvate formate lyase activating enzyme 1 [Vibrionales bacterium SWAT-3] Length = 246 Score = 52.6 bits (125), Expect = 9e-05, Method: Composition-based stats. Identities = 39/246 (15%), Positives = 85/246 (34%), Gaps = 50/246 (20%) Query: 123 GCSLTCSFCYTGT-----QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C+ +T EEI+ + R + G G Sbjct: 29 GCLMRCMYCHNRDTWDLHDGKE--VTVEEIINEAKSYRHFMKASGGGITCSG-------- 78 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 GE + + V+ +A+ + G+ L T+G++ V +E V Sbjct: 79 ----------GEAMLQPEFVRDFF-LAAKAEGI-----HTCLDTNGYIRKHTEVVDE--V 120 Query: 238 MLAISLHAVS-NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 + A L + +R+ + + +D R+ + + YV++ G D+P Sbjct: 121 LDAADLVMLDLKHMRDEIHHDFIGVSNKRTLDFARYLHKI--GKTTWIRYVIVPGYTDTP 178 Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIK 342 DA L + +K + K+ L+P++ ++ ++ + + Sbjct: 179 EDAHLLGEFIKDMDNIEKVELLPYHKLGAHKWEALGLDYPLEGVNPPSKETMDEIVAVLS 238 Query: 343 RSGYSS 348 + + Sbjct: 239 QYHSNV 244 >gi|153931596|ref|YP_001385507.1| glycyl-radical enzyme activating family protein [Clostridium botulinum A str. ATCC 19397] gi|153934810|ref|YP_001388913.1| glycyl-radical enzyme activating family protein [Clostridium botulinum A str. Hall] gi|152927640|gb|ABS33140.1| glycyl-radical enzyme activating family protein [Clostridium botulinum A str. ATCC 19397] gi|152930724|gb|ABS36223.1| glycyl-radical enzyme activating family protein [Clostridium botulinum A str. Hall] Length = 300 Score = 52.6 bits (125), Expect = 9e-05, Method: Composition-based stats. Identities = 41/274 (14%), Positives = 91/274 (33%), Gaps = 53/274 (19%) Query: 107 YIPEKSRGTLCVSSQVGCSLT---------------CSFCYTGTQKLVRNLTAEEILLQV 151 + + R T C C C+FC T N A E + + Sbjct: 48 IMFFEERCTACGICVKRCPQKIITMKNNIPVVDEGKCNFCGKCTN-FCPN-NAREYVGKD 105 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 L + ++ + E + G GEP+ + D ++ + Sbjct: 106 LTPQEIIKEIIKDEVFYEQSSGG-------VTFSG-GEPMLHAD----FINGILEE--CK 151 Query: 212 FSKRRITLSTSGFVP--NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 T+ TSG+V +V +++ + L L +++N++ + + ++ Sbjct: 152 VRGIHTTIDTSGYVSWDKFEKVRDKVDLFL-YDLKSMNNEIHKKYTGVENTI-ILENLEL 209 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI-PAKINLIPFNPWPGCEYLC 328 Y I ++ +ND+ ++ IK + + ++NL+P++ +Y Sbjct: 210 LSKY-----GHNIYLRIPIINDVNDNNKNIDETIKFISKLHLIQVNLLPYHKMGMDKYKR 264 Query: 329 ------------SDQKDIVTFSECIKRSGYSSPI 350 + + +E K++G I Sbjct: 265 LKMEYKLTGEEKPSDEKMNEIAEKFKQAGIKVKI 298 >gi|256846200|ref|ZP_05551658.1| Fe-S oxidoreductase [Fusobacterium sp. 3_1_36A2] gi|256719759|gb|EEU33314.1| Fe-S oxidoreductase [Fusobacterium sp. 3_1_36A2] Length = 284 Score = 52.6 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 40/237 (16%), Positives = 81/237 (34%), Gaps = 38/237 (16%) Query: 124 CSLTCSFC---YTGTQKLVRNL--TAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 C+L C FC T +L R EIL ++ + Sbjct: 28 CNLNCIFCECGATKKIQLERQSFKNINEILNEIQSVLKDIKPDY---------------- 71 Query: 179 ISNIVMMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236 I G GEP + D N+ K++ G +I L T+ + +V E+ Sbjct: 72 ---ITFSGSGEPTLSLDLGNISKAIKKDLKYKG------KICLITNSLLLADKQVINELE 122 Query: 237 V--MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 ++ +L+ ++ D+ +V + K ++ + + + I E +L+ IND Sbjct: 123 YIDLIIPTLNTLNQDIFEKIVRPDYKTNVDEIRKGFINLNNSNYKGEIWIEIFILENIND 182 Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWP----GCEYLCSDQKDIVTFSECIKRSGYS 347 + + + + L + + I N + I+ + ++ G Sbjct: 183 NEENFIEIANFLNSENIRYDKIQLNTIDRVGAERDLKAISFDKILKAKKILEEYGLH 239 >gi|323492522|ref|ZP_08097670.1| pyruvate formate lyase-activating enzyme 1 [Vibrio brasiliensis LMG 20546] gi|323313309|gb|EGA66425.1| pyruvate formate lyase-activating enzyme 1 [Vibrio brasiliensis LMG 20546] Length = 246 Score = 52.6 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 35/249 (14%), Positives = 77/249 (30%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T EEI+ + R + G Sbjct: 29 GCLMRCMYCHNRDTWDTHDGKE--VTVEEIINEAKSYRHFMNASGGG------------- 73 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN----IARVGE 233 V GE + + V+ A L T+G++ I V + Sbjct: 74 -----VTCSGGEAMLQPEFVRDFFRAAKAE------GIHTCLDTNGYIRKHTEVIDEVLD 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 +++ H + + N++ +D R+ + ++ YV++ G Sbjct: 123 ATDLVMLDLKHMKDEIHHDFIGVSNKR-----TLDFARYLHKI--GQKTWIRYVVVPGYT 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSE 339 D A L +K + KI L+P++ ++ ++ + Sbjct: 176 DDEEAAHMLGDFIKDMDNIEKIELLPYHKLGAHKWEALGIEYPLEGTNPPSKETMDNIVS 235 Query: 340 CIKRSGYSS 348 +++ + Sbjct: 236 ILEQYHSNV 244 >gi|313906024|ref|ZP_07839377.1| Radical SAM domain protein [Eubacterium cellulosolvens 6] gi|313469137|gb|EFR64486.1| Radical SAM domain protein [Eubacterium cellulosolvens 6] Length = 474 Score = 52.6 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 43/203 (21%), Positives = 76/203 (37%), Gaps = 36/203 (17%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKL--VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172 LC+ C+L C +C+ + R + E+ G + ++ +V Sbjct: 95 ALCLQIAHDCNLACRYCFAEEGEYHGKRGMMTFEV---------------GKKALDFVVA 139 Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF-----SKRRITLSTSGFVPN 227 S RK + G GEP N+ VK + + G S K R TL+T+G + N Sbjct: 140 NSGSRKNLEVDFFG-GEPTMNWQVVKDLV-----AYGRSIEEKYNKKFRFTLTTNGVLVN 193 Query: 228 IARV----GEEIGVMLAISLHAVSNDLRNILVPI-NRKYPLEMLIDACRHYPGLSNARRI 282 + E V++++ A ++ N + P N K E++I + + N + Sbjct: 194 EEIMDFCDKEMGNVVMSVDGRAETH---NHMRPFRNGKGSYELVIPKFQKWAERRNQDKY 250 Query: 283 TFEYVMLKGINDSPRDALNLIKI 305 D +D L L + Sbjct: 251 YVRGTFTHYNLDFAKDVLALADL 273 >gi|262191309|ref|ZP_06049502.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae CT 5369-93] gi|262032805|gb|EEY51350.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae CT 5369-93] Length = 246 Score = 52.6 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 41/250 (16%), Positives = 85/250 (34%), Gaps = 58/250 (23%) Query: 123 GCSLTCSFCY------TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176 GC C +C+ T T R +T EEI+ + R + G Sbjct: 29 GCLFRCKYCHNRDTWDTHTG---REVTVEEIIKEAKSYRHFMNASGGG------------ 73 Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVG 232 V GE + + V+ A L T+G+V P I V Sbjct: 74 ------VTCSGGEAMLQPEFVRDFFRAAKAE------GIHTCLDTNGYVRKFTPVIDEVL 121 Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 E ++ + + + +++ L+ ++ K +D R+ + ++ YV++ G Sbjct: 122 EVTD-LVMLDIKQMDDEIHQDLIGVSNK----RTLDFARYLHQI--GQKTWLRYVVVPGY 174 Query: 293 NDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFS 338 D A L + +K + KI L+P++ ++ ++ + Sbjct: 175 TDDEASAHQLGEFIKDMENIEKIELLPYHKLGAHKWEAMGEEYPLEGVNPPSKETMDKIV 234 Query: 339 ECIKRSGYSS 348 +++ + Sbjct: 235 AILEQYHSNV 244 >gi|290969100|ref|ZP_06560630.1| radical SAM domain protein [Megasphaera genomosp. type_1 str. 28L] gi|290780860|gb|EFD93458.1| radical SAM domain protein [Megasphaera genomosp. type_1 str. 28L] Length = 470 Score = 52.6 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 71/210 (33%), Gaps = 18/210 (8%) Query: 100 PVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLG 159 E V +LC++ C+L C +C+ R L+ Sbjct: 84 CQSFEVVAKERPIVKSLCLNIAHDCNLRCQYCFASQGDYD------------THKRELMS 131 Query: 160 DFPGCEDIEGMVIPSVGRKIS-NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRIT 218 ++ ++ + G++ I G GEPL NF VK++++ + +++ Sbjct: 132 FDVAKHAVDLLIRSTEGKRQHCEIDFFG-GEPLMNFGVVKQTIAYIREQEKKHNKVFKLS 190 Query: 219 LSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVPIN-RKYPLEMLIDACRHYPG 275 L+T+G + P R + + L +SL ++ + + P + + + Sbjct: 191 LTTNGMLLDPEKVRFLTDNHISLILSLDG-RPEVHDRMRPCAGGGGSYKKCAENLAYAVS 249 Query: 276 LSNARRITFEYVMLKGINDSPRDALNLIKI 305 K D D ++ + Sbjct: 250 HRRGEEYYVRGTFTKYNLDFTEDVAHMADL 279 >gi|257465668|ref|ZP_05630039.1| pyruvate formate lyase-activating enzyme 1 [Actinobacillus minor 202] gi|257451328|gb|EEV25371.1| pyruvate formate lyase-activating enzyme 1 [Actinobacillus minor 202] Length = 246 Score = 52.6 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 33/245 (13%), Positives = 85/245 (34%), Gaps = 48/245 (19%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + ++ E+++ +V+ + + G G Sbjct: 29 GCLMRCKYCHNRDTWDLDGGKE--ISVEDLMKEVVTYKHFMKATGGGVTASGGEAVLQME 86 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 + + E + D+ G + P + + E + Sbjct: 87 FVRDWFRACKAEG----------IDTCLDTNGF----------VRHYSPLVDEMLEVTDL 126 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 +L + L +++++ L+ ++ K +D R+ L+ R YV++ G D Sbjct: 127 VL-LDLKQLNDEIHQDLIGVSNK----RTLDFARYLQKLNK--RTWIRYVVVPGYTDDDD 179 Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIKR 343 A L + ++G+ K+ L+P++ ++ ++ + + I+ Sbjct: 180 SAHRLGQFIQGMENIEKVELLPYHRLGAHKWETLGYKYELEGVLPPPKEKLEHLKDIIES 239 Query: 344 SGYSS 348 G++ Sbjct: 240 YGHTV 244 >gi|319943185|ref|ZP_08017468.1| pyruvate formate-lyase activating enzyme [Lautropia mirabilis ATCC 51599] gi|319743727|gb|EFV96131.1| pyruvate formate-lyase activating enzyme [Lautropia mirabilis ATCC 51599] Length = 273 Score = 52.6 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 41/251 (16%), Positives = 84/251 (33%), Gaps = 54/251 (21%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + R +T E++ QV+ R L G G Sbjct: 54 GCLMRCLYCHNRDTWDLQSDKAREMTVPEVMKQVMSYRHYLKATGGGVTATGG------- 106 Query: 178 KISNIVMMGMGEPLCNFDNVKK-SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236 EPL ++ V+ ++ G+ L T+G+ + V E + Sbjct: 107 -----------EPLLQYEFVRDWFVAC--HQNGI-----HTCLDTNGYALHYDEVLETLL 148 Query: 237 VM---LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 + + L + D+ +LV P + +H R+ YV++ G Sbjct: 149 DHTDLVMLDLKQIDPDIHRVLV----GIPNTRTLAFAQHLARRKQKTRV--RYVVVPGYT 202 Query: 294 DSPRDALNLIKILKGIPAK--INLIPFNP-------WPGCEYL-----CSDQKDIVTFSE 339 D R A L + + + + ++P++ G +Y ++ + Sbjct: 203 DDDRSAHLLGRFIAPMDNVDTVEILPYHELGAHKWALCGDDYKLKGVHPPPKETVQRVRS 262 Query: 340 CIKRSGYSSPI 350 ++ G + + Sbjct: 263 ILEGYGKAVIV 273 >gi|258621387|ref|ZP_05716421.1| pyruvate formate-lyase 1 activating enzyme [Vibrio mimicus VM573] gi|258626814|ref|ZP_05721621.1| pyruvate formate-lyase 1 activating enzyme [Vibrio mimicus VM603] gi|262171168|ref|ZP_06038846.1| pyruvate formate-lyase activating enzyme [Vibrio mimicus MB-451] gi|258580861|gb|EEW05803.1| pyruvate formate-lyase 1 activating enzyme [Vibrio mimicus VM603] gi|258586775|gb|EEW11490.1| pyruvate formate-lyase 1 activating enzyme [Vibrio mimicus VM573] gi|261892244|gb|EEY38230.1| pyruvate formate-lyase activating enzyme [Vibrio mimicus MB-451] Length = 246 Score = 52.6 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 40/250 (16%), Positives = 86/250 (34%), Gaps = 58/250 (23%) Query: 123 GCSLTCSFCY------TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176 GC C +C+ T T R +T EEI+ + R + G Sbjct: 29 GCLFRCKYCHNRDTWDTHTG---REVTVEEIIKEAKSYRHFMNASGGG------------ 73 Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVG 232 V GE + + V+ A L T+G++ P I V Sbjct: 74 ------VTCSGGEAMLQPEFVRDFFRAAKAE------GIHTCLDTNGYIRKFTPVIDEVL 121 Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 E ++ + + +++++ L+ ++ K +D R+ + ++ YV++ G Sbjct: 122 EVTD-LVMLDIKQMNDEIHQDLIGVSNK----RTLDFARYLHQI--GQKTWLRYVVVPGY 174 Query: 293 NDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFS 338 D A L + +K + KI L+P++ ++ ++ + Sbjct: 175 TDDEASAHQLGEFIKDMENIEKIELLPYHKLGAHKWEAMGEEYPLEGVNPPSKETMDKIV 234 Query: 339 ECIKRSGYSS 348 +++ + Sbjct: 235 AILEQYHSNV 244 >gi|258513433|ref|YP_003189655.1| Radical SAM domain-containing protein [Desulfotomaculum acetoxidans DSM 771] gi|257777138|gb|ACV61032.1| Radical SAM domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 452 Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 40/218 (18%), Positives = 82/218 (37%), Gaps = 27/218 (12%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C++ C +C+ G K + L+ G + +E ++ S Sbjct: 92 ALCLHLAHDCNMRCRYCFAGQGKFGGS-------------SDLMPLNVGKKAMEFLIKSS 138 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI---TLSTSGFV--PNIA 229 R+ + G GEPL NF V + + GL+ + +I T++T+G + + Sbjct: 139 GSRRNIEVDFFG-GEPLMNFK-VLQ--DLVYYGEGLASANGKIIKFTVTTNGLLLNKEVE 194 Query: 230 RVGEEIGVMLAISLHAVSNDLRNILVPI-NRKYPLEMLIDACRHYPGLSNARRITFEYVM 288 + +SL DL N + P+ N + + ++ + + + Sbjct: 195 DFLNCHDISTVLSLDG-RPDLHNYMRPMPNGEGSYKYVLPNFQRFVNSRHQEDYYIRGTY 253 Query: 289 LKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 D +D +L + G + +++ P G +Y Sbjct: 254 THHNLDFSKDIFHLAGL--GFNS-LSIEPVVAESGKDY 288 >gi|271500817|ref|YP_003333842.1| pyruvate formate-lyase activating enzyme [Dickeya dadantii Ech586] gi|270344372|gb|ACZ77137.1| pyruvate formate-lyase activating enzyme [Dickeya dadantii Ech586] Length = 246 Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 42/249 (16%), Positives = 84/249 (33%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T EE++ +V+ R + G Sbjct: 29 GCLMRCLYCHNRDTWDTHGGKE--ITVEELMKEVVTYRHFMNASGGG------------- 73 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 V GE + + V+ A G++ L T+GFV P I + + Sbjct: 74 -----VTASGGEAILQAEFVRDWFR-ACHEQGIN-----TCLDTNGFVRRYDPVIDELLD 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L +++++ LV ++ L+ Y N R YV++ G + Sbjct: 123 ATD-LVMLDLKQLNDEIHQNLVGVSNHRTLD-----FARYLAKRNQ-RTWIRYVVVPGWS 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 D A L + +G+ KI L+P++ ++ + Sbjct: 176 DDDASAHLLGEFTQGMSNIEKIELLPYHELGKHKWTAMGEEYKLDGVKPPKADTMDRVKS 235 Query: 340 CIKRSGYSS 348 + G+ Sbjct: 236 ILTSYGHKV 244 >gi|254362790|ref|ZP_04978871.1| hypothetical protein gi|153094419|gb|EDN75267.1| [formate-C-acetyltransferase]-activating enzyme [Mannheimia haemolytica PHL213] Length = 246 Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 36/245 (14%), Positives = 85/245 (34%), Gaps = 48/245 (19%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T EE++ +V + + G G Sbjct: 29 GCLMRCKYCHNRDTWDLDGGKE--ITVEELMKEVTTYKHFMKATGGGVTASGGEAVLQME 86 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 + + E ++ D+ G + P + + E + Sbjct: 87 FVRDWFRACKAEG----------INTCLDTNGF----------VRHYSPVVDEMLEVTDL 126 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 +L + L +++++ LV ++ K +D R+ L+ YV++ G D Sbjct: 127 VL-LDLKQLNDEVHQDLVGVSNK----RTLDFARYLHKLNK--PTWVRYVVVPGYTDDDD 179 Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEYLC------------SDQKDIVTFSECIKR 343 A L + ++G+ K+ L+P++ ++ ++D+ + I+ Sbjct: 180 SAHRLGQFIQGMDNIEKVELLPYHRLGAHKWETLGYKYELEGVMSPPKEDLERIQKIIES 239 Query: 344 SGYSS 348 G++ Sbjct: 240 YGHTV 244 >gi|147679198|ref|YP_001213413.1| Fe-S oxidoreductases [Pelotomaculum thermopropionicum SI] gi|146275295|dbj|BAF61044.1| predicted Fe-S oxidoreductases [Pelotomaculum thermopropionicum SI] Length = 466 Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 45/239 (18%), Positives = 85/239 (35%), Gaps = 31/239 (12%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 +LC+ C+L C +C+ G + A L+ G ++ ++ S Sbjct: 92 SLCLHLAHSCNLRCRYCFAGQGRFGG-------------ADELMPVEVGRAALDFLIARS 138 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSL----SIASDSMGLSFSKRRITLSTSGFVPNIAR 230 RK + G GEPL NF V K L G F + TL+T+ + + Sbjct: 139 GRRKHLEVDFFG-GEPLLNF-AVLKELVDYGRRLGREKGKEF---KFTLTTNALLLDGEI 193 Query: 231 VG----EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286 G E I V+L++ +D + ++ + + + + Sbjct: 194 AGFLNRENISVVLSLDGRREVHD--AMRPAPGGNGSYDLALARIKSFVDSRAGKNYYIRG 251 Query: 287 VMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSG 345 + D D L+L + G I++ P +Y D+ + F++ + +G Sbjct: 252 TYTRRNLDFCEDVLHLAGL--GFE-HISVEPVVAPAEADYSLRDEDLPLLFAQYERLAG 307 >gi|197284599|ref|YP_002150471.1| pyruvate formate lyase-activating enzyme 1 [Proteus mirabilis HI4320] gi|227356781|ref|ZP_03841166.1| pyruvate formate-lyase activating enzyme [Proteus mirabilis ATCC 29906] gi|194682086|emb|CAR41647.1| pyruvate formate-lyase activating enzyme [Proteus mirabilis HI4320] gi|227163071|gb|EEI48006.1| pyruvate formate-lyase activating enzyme [Proteus mirabilis ATCC 29906] Length = 246 Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 39/244 (15%), Positives = 81/244 (33%), Gaps = 46/244 (18%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C +C+ R+ T + Q++ L+ + Sbjct: 29 GCLMRCLYCH------NRD-TWDTHGGQIVTVDELMKEAVTYRHFMNASGGG-------- 73 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGEEIGVM 238 V GE + + V+ L T+GFV P I + + + Sbjct: 74 VTASGGEAILQAEFVRDWFRACKKEN------IHTCLDTNGFVRRYDPVIDELMDVTD-L 126 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 + + L V++D+ LV ++ + LE Y ++ YV++ G +D Sbjct: 127 VMLDLKQVNDDIHQKLVGVSNQRTLE-----FARYLAKR-GQKTWIRYVVVPGWSDDDDS 180 Query: 299 ALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKRS 344 A L + +K + K+ L+P++ ++ ++ + I Sbjct: 181 AHRLGEFIKDMKNIEKVELLPYHELGKHKWVALGEEYKLDGIHPPSKETMENVKAIIASY 240 Query: 345 GYSS 348 G+ Sbjct: 241 GHKV 244 >gi|15641871|ref|NP_231503.1| pyruvate formate lyase-activating enzyme 1 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587313|ref|ZP_01677085.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae 2740-80] gi|121727114|ref|ZP_01680288.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae V52] gi|147674120|ref|YP_001217403.1| pyruvate formate lyase-activating enzyme 1 [Vibrio cholerae O395] gi|153213085|ref|ZP_01948623.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae 1587] gi|153818851|ref|ZP_01971518.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae NCTC 8457] gi|153823101|ref|ZP_01975768.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae B33] gi|153825235|ref|ZP_01977902.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae MZO-2] gi|153830545|ref|ZP_01983212.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae 623-39] gi|183179507|ref|ZP_02957718.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae MZO-3] gi|227081998|ref|YP_002810549.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae M66-2] gi|229508034|ref|ZP_04397539.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae BX 330286] gi|229511727|ref|ZP_04401206.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae B33] gi|229515249|ref|ZP_04404709.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae TMA 21] gi|229518865|ref|ZP_04408308.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae RC9] gi|229520329|ref|ZP_04409755.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae TM 11079-80] gi|229523888|ref|ZP_04413293.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae bv. albensis VL426] gi|229529108|ref|ZP_04418498.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae 12129(1)] gi|229607581|ref|YP_002878229.1| pyruvate formate lyase-activating enzyme 1 [Vibrio cholerae MJ-1236] gi|254226038|ref|ZP_04919637.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae V51] gi|254286774|ref|ZP_04961728.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae AM-19226] gi|254848956|ref|ZP_05238306.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae MO10] gi|255745371|ref|ZP_05419320.1| pyruvate formate-lyase activating enzyme [Vibrio cholera CIRS 101] gi|262153526|ref|ZP_06028655.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae INDRE 91/1] gi|262167426|ref|ZP_06035133.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae RC27] gi|298498092|ref|ZP_07007899.1| pyruvate formate-lyase 1-activating enzyme [Vibrio cholerae MAK 757] gi|9656400|gb|AAF95017.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548473|gb|EAX58531.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae 2740-80] gi|121630492|gb|EAX62884.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae V52] gi|124116132|gb|EAY34952.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae 1587] gi|125621421|gb|EAZ49756.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae V51] gi|126510579|gb|EAZ73173.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae NCTC 8457] gi|126519392|gb|EAZ76615.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae B33] gi|146316003|gb|ABQ20542.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae O395] gi|148873975|gb|EDL72110.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae 623-39] gi|149741214|gb|EDM55265.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae MZO-2] gi|150423201|gb|EDN15148.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae AM-19226] gi|183012918|gb|EDT88218.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae MZO-3] gi|227009886|gb|ACP06098.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae M66-2] gi|227013767|gb|ACP09977.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae O395] gi|229332882|gb|EEN98368.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae 12129(1)] gi|229337469|gb|EEO02486.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae bv. albensis VL426] gi|229342695|gb|EEO07687.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae TM 11079-80] gi|229343554|gb|EEO08529.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae RC9] gi|229347954|gb|EEO12913.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae TMA 21] gi|229351692|gb|EEO16633.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae B33] gi|229355539|gb|EEO20460.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae BX 330286] gi|229370236|gb|ACQ60659.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae MJ-1236] gi|254844661|gb|EET23075.1| pyruvate formate-lyase 1 activating enzyme [Vibrio cholerae MO10] gi|255737201|gb|EET92597.1| pyruvate formate-lyase activating enzyme [Vibrio cholera CIRS 101] gi|262024123|gb|EEY42817.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae RC27] gi|262030653|gb|EEY49288.1| pyruvate formate-lyase activating enzyme [Vibrio cholerae INDRE 91/1] gi|297542425|gb|EFH78475.1| pyruvate formate-lyase 1-activating enzyme [Vibrio cholerae MAK 757] gi|327484419|gb|AEA78826.1| Pyruvate formate-lyase activating enzyme [Vibrio cholerae LMA3894-4] Length = 246 Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 41/250 (16%), Positives = 85/250 (34%), Gaps = 58/250 (23%) Query: 123 GCSLTCSFCY------TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176 GC C +C+ T T R +T EEI+ + R + G G Sbjct: 29 GCLFRCKYCHNRDTWDTHTG---REVTVEEIIKEAKSYRHFMNASGGGITCSG------- 78 Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVG 232 GE + + V+ A L T+G+V P I V Sbjct: 79 -----------GEAMLQPEFVRDFFRAAKAE------GIHTCLDTNGYVRKFTPVIDEVL 121 Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 E ++ + + + +++ L+ ++ K +D R+ + ++ YV++ G Sbjct: 122 EVTD-LVMLDIKQMDDEIHQDLIGVSNK----RTLDFARYLHQI--GQKTWLRYVVVPGY 174 Query: 293 NDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFS 338 D A L + +K + KI L+P++ ++ ++ + Sbjct: 175 TDDEASAHQLGEFIKDMENIEKIELLPYHKLGAHKWEAMGEEYPLEGVNPPSKETMDKIV 234 Query: 339 ECIKRSGYSS 348 +++ + Sbjct: 235 AILEQYHSNV 244 >gi|229582204|ref|YP_002840603.1| tRNA-modifying enzyme [Sulfolobus islandicus Y.N.15.51] gi|228012920|gb|ACP48681.1| Wyosine base formation domain protein [Sulfolobus islandicus Y.N.15.51] Length = 361 Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 49/308 (15%), Positives = 100/308 (32%), Gaps = 33/308 (10%) Query: 53 MSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS 112 + +S+ + L + + II V +K T L+ + G IE+ Sbjct: 10 IDTVSEIFKELQKEKYHIIGTHSVYKKCHW--THSALVANRSCYKGKFYGIES------H 61 Query: 113 RGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLT-------AEEILLQVLLARSLLGDFP 162 R + C C C+ L + T E I+ + + Sbjct: 62 RCVQMTPTAAWCWFRCVHCWRLEPEDVGLEWDDTKMPAYDDPEYIVERSIEEHKKAVSGY 121 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 + + + +++ + GEP ++ + + + TS Sbjct: 122 LGRNDVNIQKVKDAMRPAHVAISLTGEPTL-YEKLGDLIK-----EYHKRGMTTFLV-TS 174 Query: 223 GFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI 282 G P+I EE L +SL A + ++ ++++ P S Sbjct: 175 GVRPDILASLEEEPTQLFVSLQAPNEIKHKMINRPVVANSWQLVMKTLEILPSFS--SPT 232 Query: 283 TFEYVMLKGINDSPRDALNLIKILK-GIPAKINLIPFNPWPGCEYL-----CSDQKDIVT 336 + M+KG N S +DA K+++ +P I + + Y K+I Sbjct: 233 VIRFTMIKGYNMSEQDAREFAKLMEIAMPTYIEIKAYMHVGPSTYRLSRDAMPKHKEIRE 292 Query: 337 FSECIKRS 344 F++ + + Sbjct: 293 FAKTLAQY 300 >gi|165976460|ref|YP_001652053.1| pyruvate formate lyase-activating enzyme 1 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876561|gb|ABY69609.1| pyruvate formate-lyase activating enzyme [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 245 Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 32/245 (13%), Positives = 82/245 (33%), Gaps = 48/245 (19%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + ++ E+++ +V+ + + G G Sbjct: 28 GCLMRCKYCHNRDTWDLDGGKE--ISVEDLMKEVVTYKHFMKATGGGVTASGGEAVLQME 85 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 + + E + D+ G + P + + E Sbjct: 86 FVRDWFRACKAEG----------IDTCLDTNGF----------VRHYSPVVDEMLEVTD- 124 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 ++ + L +++++ L+ ++ K +D R+ L+ R YV++ G D Sbjct: 125 LVMLDLKQLNDEIHQDLIGVSNK----RTLDFARYLQKLNK--RTWIRYVVVPGYTDDDD 178 Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIKR 343 A L + ++G+ K+ L+P++ ++ ++ + I+ Sbjct: 179 SAHRLGQFIQGMQNIEKVELLPYHRLGAHKWETLGYKYELEGVLPPPKETMDRLKAIIES 238 Query: 344 SGYSS 348 G+ Sbjct: 239 YGHIV 243 >gi|153001208|ref|YP_001366889.1| pyruvate formate lyase-activating enzyme 1 [Shewanella baltica OS185] gi|160875881|ref|YP_001555197.1| pyruvate formate lyase-activating enzyme 1 [Shewanella baltica OS195] gi|217972870|ref|YP_002357621.1| pyruvate formate lyase-activating enzyme 1 [Shewanella baltica OS223] gi|151365826|gb|ABS08826.1| pyruvate formate-lyase activating enzyme [Shewanella baltica OS185] gi|160861403|gb|ABX49937.1| pyruvate formate-lyase activating enzyme [Shewanella baltica OS195] gi|217498005|gb|ACK46198.1| pyruvate formate-lyase activating enzyme [Shewanella baltica OS223] gi|315268072|gb|ADT94925.1| pyruvate formate-lyase activating enzyme [Shewanella baltica OS678] Length = 246 Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 32/245 (13%), Positives = 75/245 (30%), Gaps = 48/245 (19%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + + +E++ Q++ R L G G Sbjct: 29 GCLMRCQYCHNRDTWDLDGGKE--VLVDELMSQIISYRPFLDASNGGVTASGGEAILQAE 86 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 ++ + E + D+ G + P I + + + Sbjct: 87 FVAELFTACQQEG----------IHTCLDTNGF----------VRKYTPVIDELLDHTNL 126 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 +L + + + ++ L ++ L+ Y N YV++ G D Sbjct: 127 VL-LDIKHMDDEKHIELTKVSNHRTLQ-----FAQYLAERNQ-ATWIRYVVVGGFTDDEA 179 Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIKR 343 AL L + +K + K+ L+P++ ++ ++ + Sbjct: 180 SALQLAEFIKPMKNIEKVELLPYHELGKHKWEAMGESYQLDGISPPSRETMEKIKAVFVG 239 Query: 344 SGYSS 348 G ++ Sbjct: 240 QGINA 244 >gi|302874687|ref|YP_003843320.1| pyruvate formate-lyase activating enzyme [Clostridium cellulovorans 743B] gi|302577544|gb|ADL51556.1| pyruvate formate-lyase activating enzyme [Clostridium cellulovorans 743B] Length = 240 Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 42/265 (15%), Positives = 91/265 (34%), Gaps = 46/265 (17%) Query: 96 CIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR 155 +G E++ + + V Q GC+L C +C+ Sbjct: 2 TVGRVHSFESMGLLDGPGIRNIVFLQ-GCNLRCLYCHNPD---------------TWACN 45 Query: 156 SLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR 215 P + + K V GEPL ++ + ++L G+ Sbjct: 46 GGTEYTPEQLLKKIVRFKPYFEKSGGGVTFSGGEPLLQYNFLIEALK-LCKENGI----- 99 Query: 216 RITLSTSGFVPNIAR--VGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY 273 + T+G + V+L I + ++++ + + ++A ++ Sbjct: 100 HTAIDTAGVGMGNYEEVLKYTDLVLLDIKHY---DEIKYKEITGRDNSEFKKFLEALKN- 155 Query: 274 PGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFN-------PWPGC 324 + ++ +V++ GIND+ D L L + +K IP K++L+P++ G Sbjct: 156 ----SNSKVWIRHVVVPGINDTKEDVLALCEYIKDIPRIEKVDLLPYHVLGVNKYDVMGI 211 Query: 325 EY-----LCSDQKDIVTFSECIKRS 344 EY ++ +K + Sbjct: 212 EYRLKDLQPMSKEKAEELKAFLKEN 236 >gi|317051293|ref|YP_004112409.1| Radical SAM domain-containing protein [Desulfurispirillum indicum S5] gi|316946377|gb|ADU65853.1| Radical SAM domain protein [Desulfurispirillum indicum S5] Length = 313 Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 12/133 (9%) Query: 182 IVMMGMGEPLC--NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM- 238 I G GEPL F + ++ F + R+ L T+G + +E + Sbjct: 75 ITFAGSGEPLLFRRFGELVAAIKA-------EFPQYRLCLLTNGTPLTDRALWQECQQLD 127 Query: 239 -LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 + SL A + ++ + + ++ +I A + I E ++L GIND P Sbjct: 128 IVVPSLDAATQEIFTRINRPHHTIDVQEVITALSDFSRQFCGE-IWLEILILPGINDDPA 186 Query: 298 DALNLIKILKGIP 310 L + I Sbjct: 187 HLEALAAACRSID 199 >gi|239623326|ref|ZP_04666357.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239522292|gb|EEQ62158.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 466 Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 71/195 (36%), Gaps = 20/195 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L C +C+ E + R+L+ G + ++ ++ S Sbjct: 107 ALCLHIAHDCNLACRYCFAEE---------GEYHGR----RALMSYEVGKKALDFLIANS 153 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV--- 231 R+ + G GEPL N+D VK+ + K R T++T+G + N + Sbjct: 154 GNREHLEVDFFG-GEPLMNWDVVKRLVEYGRSKEEEFHKKFRFTITTNGVLLNDEIMDFC 212 Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 E V++++ ND + N E+ + + + + + Sbjct: 213 NKEMSNVVMSLDGRKDVND--RMRPFRNGSGSYELTVPKFQKFAKSRGQKDYYVRGTFTR 270 Query: 291 GINDSPRDALNLIKI 305 D D L+ + Sbjct: 271 NNLDFAADVLHYADL 285 >gi|281356709|ref|ZP_06243200.1| Radical SAM domain protein [Victivallis vadensis ATCC BAA-548] gi|281316836|gb|EFB00859.1| Radical SAM domain protein [Victivallis vadensis ATCC BAA-548] Length = 321 Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 74/228 (32%), Gaps = 33/228 (14%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 CSL C +C R T L E + S ++ I Sbjct: 29 CSLDCIYCEA------RQTTC-------LTLERKEYVPVDAVIRELDEVLSGKPELDFIT 75 Query: 184 MMGMGEPLCN--FDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIARVGEEIGVM 238 G GEP N V L + + + L T+GF P + R I Sbjct: 76 FSGSGEPTLNSGIGRVVDFLKT-------RYPQYPVCLLTNGFALGDPEVRREIARID-R 127 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 + SL A + + + + Y + + I E ++ G+NDS Sbjct: 128 VVPSLDASNTEEFIRINRPAPGLEFGRFVKELTAYTQ-TASSEIYLELFIVPGVNDSDES 186 Query: 299 ALNLIKILKGIPAKINLIPFN--PWPG-CEYLCSD-QKDIVTFSECIK 342 ++I++G+ ++ N PG +++ ++ F ++ Sbjct: 187 IRRFVEIVRGMKLV--MVQLNTLDRPGVVDWVRPSTPENTRRFIRALE 232 >gi|291531854|emb|CBK97439.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Eubacterium siraeum 70/3] Length = 457 Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 44/263 (16%), Positives = 92/263 (34%), Gaps = 31/263 (11%) Query: 87 KWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEE 146 K L + + + + +C+ C+L C +C+ T + Sbjct: 76 KMLF-----TEDDYEQYAAMAMKAPIK-AMCLHVSHDCNLRCKYCFAQTGDFGGD----- 124 Query: 147 ILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD 206 R L+ G ++ ++ S R+ + G GEPL +D V +++ A Sbjct: 125 --------RMLMKPETGKRAMDFLIKHSANRENLEVDFFG-GEPLMAWDTVVETVKYARS 175 Query: 207 SMGLSFSKRRITLSTSGFVPNIARV----GEEIGVMLAISLHAVSNDLRNILVPINRKYP 262 R T++T+G + + ++ E +L++ ND NI N K Sbjct: 176 IEKQHGKNFRFTITTNGMLLDDEKIDYINKEMSNCVLSLDGRKEVND--NIRPTPNGKGS 233 Query: 263 LEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP 322 ++++ + + K D D L++ + G ++++ P P Sbjct: 234 YDIIVPKYQKLVAGRGTKDYYVRGTFTKYNLDFANDVLHISDL--GFE-QLSVEPVVTDP 290 Query: 323 GCEY--LCSDQKDIVTFSECIKR 343 Y SD I + +++ Sbjct: 291 KMPYAITESDLPTIFAEYDRLEK 313 >gi|258513074|ref|YP_003189331.1| iron-molybdenum cofactorbiosynthesis nitrogenase NifB [Acetobacter pasteurianus IFO 3283-01] gi|256634977|dbj|BAI00952.1| iron-molybdenum cofactorbiosynthesis nitrogenase NifB [Acetobacter pasteurianus IFO 3283-01] gi|256638032|dbj|BAI04000.1| iron-molybdenum cofactorbiosynthesis nitrogenase NifB [Acetobacter pasteurianus IFO 3283-03] gi|256641086|dbj|BAI07047.1| iron-molybdenum cofactorbiosynthesis nitrogenase NifB [Acetobacter pasteurianus IFO 3283-07] gi|256644141|dbj|BAI10095.1| iron-molybdenum cofactorbiosynthesis nitrogenase NifB [Acetobacter pasteurianus IFO 3283-22] gi|256647196|dbj|BAI13143.1| iron-molybdenum cofactorbiosynthesis nitrogenase NifB [Acetobacter pasteurianus IFO 3283-26] gi|256650249|dbj|BAI16189.1| iron-molybdenum cofactorbiosynthesis nitrogenase NifB [Acetobacter pasteurianus IFO 3283-32] gi|256653240|dbj|BAI19173.1| iron-molybdenum cofactorbiosynthesis nitrogenase NifB [Acetobacter pasteurianus IFO 3283-01-42C] gi|256656293|dbj|BAI22219.1| iron-molybdenum cofactorbiosynthesis nitrogenase NifB [Acetobacter pasteurianus IFO 3283-12] Length = 369 Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 53/143 (37%), Gaps = 16/143 (11%) Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 R+ E L + L A + +R ++P ++ +DA + ++ Y+ Sbjct: 223 FQRLREAGADSLGMHLEAATQAVREKIMPGKATVSVDRYMDAFASAVPIFGRGQVN-TYI 281 Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVT----FSEC 340 + G+ DSP D L L + L + ++PF P G + + + Sbjct: 282 L-AGLGDSPEDILALAERLIALGVYPFVVPFVPISGTPLENHVPPSAEFMKSVLAPLGRM 340 Query: 341 IKRSGYSSPIRTPRGLDILAACG 363 ++ + S DI A CG Sbjct: 341 LREANMKST-------DIRAGCG 356 >gi|167766973|ref|ZP_02439026.1| hypothetical protein CLOSS21_01490 [Clostridium sp. SS2/1] gi|167710948|gb|EDS21527.1| hypothetical protein CLOSS21_01490 [Clostridium sp. SS2/1] gi|291559683|emb|CBL38483.1| pyruvate formate-lyase 1-activating enzyme [butyrate-producing bacterium SSC/2] Length = 244 Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 41/242 (16%), Positives = 82/242 (33%), Gaps = 47/242 (19%) Query: 96 CIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR 155 +G IE++ + + + Q GC+L C FC+ N E+ Sbjct: 2 TVGHVHSIESMGLVDGPGIRTVIFLQ-GCALRCRFCH--------NPDTWELSG------ 46 Query: 156 SLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKS--------LSIASDS 207 P + ++ + G GEPL D +K++ + D+ Sbjct: 47 -GTEYTPEKLVAKIRRFKPYFKEDGGVTFSG-GEPLLQPDFLKETLKLCKNEGIHTCIDT 104 Query: 208 MGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267 G S L+ + V + + + H + + ++ E + Sbjct: 105 AGYGLSDYDEILNHTDLV-----LLDLKHI------HKTDYEK--MTGRSMDRF--EEFL 149 Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCE 325 +A + +I +V++ GI DS L ++ IP K+ L+P++ + Sbjct: 150 NAL-----KKHQTKIWIRHVVVPGITDSEDHMAQLKAYIQTIPNVEKVELLPYHLLGTNK 204 Query: 326 YL 327 Y Sbjct: 205 YK 206 >gi|78044483|ref|YP_361420.1| radical SAM domain-containing protein [Carboxydothermus hydrogenoformans Z-2901] gi|77996598|gb|ABB15497.1| radical SAM domain protein [Carboxydothermus hydrogenoformans Z-2901] Length = 458 Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 38/214 (17%), Positives = 80/214 (37%), Gaps = 23/214 (10%) Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168 P+ +C++ C++ C +C+ GT R L+ + I+ Sbjct: 94 PKTEIKAMCLNIAHDCNMRCRYCFAGTGSYG-------------HERGLMPLTIAQKAID 140 Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL---SIASDSMGLSFSKRRITLSTSGFV 225 ++ S RK + G GEPL N++ VK ++ + + G + S T + Sbjct: 141 FLIENSGYRKNLEVDFFG-GEPLLNWEVVKATVLYGKAKAKAFGKNISFTLTTNALLLTD 199 Query: 226 PNIARVGE-EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF 284 + E ++G++L++ +D R +P + + ++ +++ R Sbjct: 200 EVREFLAEHDMGIVLSLDGREEVHD-RMRPLPGGKA-SYQTVLTNIKNFLEKWGDRPYYI 257 Query: 285 EYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318 D D L + +G + I+L P Sbjct: 258 RGTFTAQNPDFAEDFKALAQ--EGFKS-ISLEPV 288 >gi|331086093|ref|ZP_08335176.1| hypothetical protein HMPREF0987_01479 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407016|gb|EGG86521.1| hypothetical protein HMPREF0987_01479 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 303 Score = 52.2 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 14/83 (16%) Query: 281 RITFEYVMLKGINDSPRDALNLIKILKGIPAK--INLIPFNPWPGCEYLC---------- 328 RI ++ G+ND+ + +I LK + INL+P++ G +Y Sbjct: 217 RIYIRIPVIGGVNDTEEEMEAMITFLKQSISVSQINLLPYHNIAGGKYDKLDIRYKGEAF 276 Query: 329 --SDQKDIVTFSECIKRSGYSSP 349 ++ + F ++G+++ Sbjct: 277 TIPPKEQMEAFQRRFIQNGFANT 299 >gi|237743605|ref|ZP_04574086.1| Fe-S oxidoreductase [Fusobacterium sp. 7_1] gi|229432636|gb|EEO42848.1| Fe-S oxidoreductase [Fusobacterium sp. 7_1] Length = 287 Score = 52.2 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 83/237 (35%), Gaps = 38/237 (16%) Query: 124 CSLTCSFC---YTGTQKLVRN--LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 C+L C FC T +L R EIL ++ + Sbjct: 28 CNLNCIFCECGATKKIQLKRQRFKDMNEILNEIQSVLKDIKPDY---------------- 71 Query: 179 ISNIVMMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236 + G GEP + D N+ K++ G +I L T+ + +V +E+ Sbjct: 72 ---VTFSGSGEPTLSLDLGNISKAIKKDLKFKG------KICLITNSLLLADKQVIKELE 122 Query: 237 V--MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 ++ +L+ + D+ +V + + ++ + + + +I E +L+ IND Sbjct: 123 YIDLIIPTLNTLRQDIFEKIVRPDYRTSVDEIRKGFINLNNSNYKGKIWIEIFILENIND 182 Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWP----GCEYLCSDQKDIVTFSECIKRSGYS 347 + + + + L + + I N + I+ + ++ +G Sbjct: 183 NEENFIEIANFLNSENIRYDRIQLNTIDRVGAERDLKAISFDKILKAKKILEENGLH 239 >gi|312134544|ref|YP_004001882.1| Radical SAM domain-containing protein [Caldicellulosiruptor owensensis OL] gi|311774595|gb|ADQ04082.1| Radical SAM domain protein [Caldicellulosiruptor owensensis OL] Length = 453 Score = 52.2 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 66/192 (34%), Gaps = 20/192 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 +C+ C L C +C+ + R L+ G + I+ ++ S Sbjct: 92 AMCLHVAHDCDLRCRYCFASSGTFK-------------QERKLMSFDVGKKAIDFLLQNS 138 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS---MGLSFSKRRITLSTSGFVPNIARV 231 R+ + G GEPL NF+ VKK + A S T +T+ I + Sbjct: 139 GSRQNLEVDFFG-GEPLLNFEVVKKIVEYARQEEKKYNKKISFTLTTNATNLTDQIIEYL 197 Query: 232 GEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 + + V+L+ ND I N Y + + D + N + Sbjct: 198 NQNMENVVLSHDGRPEVNDFMRIDKDGNGTY--DRITDNILRFIKKRNGKTYYVRGTFTA 255 Query: 291 GINDSPRDALNL 302 D +D L+L Sbjct: 256 KNLDFSKDVLHL 267 >gi|258645977|ref|ZP_05733446.1| radical SAM domain protein [Dialister invisus DSM 15470] gi|260403348|gb|EEW96895.1| radical SAM domain protein [Dialister invisus DSM 15470] Length = 478 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 40/259 (15%), Positives = 95/259 (36%), Gaps = 21/259 (8%) Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 L+R + E + LC++ C+L C +C+ G Sbjct: 73 LIRAQSLYAPMDKNYEMAIEDKPIVKALCINIAHDCNLRCKYCFAGQGGY---------- 122 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 Q R L+ ++ ++ S R+ + G GEPL N+ V+++++ Sbjct: 123 GQ---WRMLMSFDVARRAVDFLIAHSGHREHCELDFFG-GEPLMNWHVVQQTVTYVRQQE 178 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH-AVSNDLRNILVP-INRKYPLEML 266 K +++L+T+G + + +V +++ L ++ + + P +N + + + Sbjct: 179 KKHNKKIKMSLTTNGMLLDKEKVKYLTDNHISLILSLDGRKEMHDSMRPGVNNEGTYDRI 238 Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 + ++ N + D D +++ G PA +++ P +Y Sbjct: 239 MKNLQYCIKHRNGEEYYVRGTFTRQNLDFTTDVEDMLN--HGFPA-VSMEPVVGDDTADY 295 Query: 327 --LCSDQKDIVTFSECIKR 343 SD + + + + Sbjct: 296 SIKESDLPRVKDEYDKLAK 314 >gi|283784729|ref|YP_003364594.1| pyruvate formate-lyase 1 activating enzyme [Citrobacter rodentium ICC168] gi|282948183|emb|CBG87750.1| pyruvate formate-lyase 1 activating enzyme [Citrobacter rodentium ICC168] Length = 246 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 38/249 (15%), Positives = 83/249 (33%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T EE++ +V+ R + G G Sbjct: 29 GCLMRCLYCHNRDTWDTHGGKE--VTVEELMKEVVTYRHFMNASGGGVTASGGEAILQAE 86 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 + + ++ G+ L T+GFV P I + E Sbjct: 87 FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLE 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L +++++ LV ++ LE Y N + YV++ G + Sbjct: 123 VTD-LVMLDLKQMNDEIHQHLVGVSNHRTLE-----FAQYLAKKN-VNVWIRYVVVPGWS 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 D A L + + + KI L+P++ ++ ++ + Sbjct: 176 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 235 Query: 340 CIKRSGYSS 348 +++ G+ Sbjct: 236 ILEQYGHKV 244 >gi|148381132|ref|YP_001255673.1| glycyl-radical activating family protein [Clostridium botulinum A str. ATCC 3502] gi|148290616|emb|CAL84745.1| putative pyruvate formate-lyase 2 activating enzyme [Clostridium botulinum A str. ATCC 3502] Length = 252 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 41/273 (15%), Positives = 91/273 (33%), Gaps = 53/273 (19%) Query: 108 IPEKSRGTLCVSSQVGCSLT---------------CSFCYTGTQKLVRNLTAEEILLQVL 152 + + R T C C C+FC T N A E + + L Sbjct: 1 MFFEERCTACGICVKRCPQKIITMKNNIPVVDEGKCNFCGKCTN-FCPN-NAREYVGKDL 58 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 + ++ + E + G GEP+ + D ++ + Sbjct: 59 TPQEIIKEIIKDEVFYEQSSGG-------VTFSG-GEPMLHAD----FINGILEE--CKV 104 Query: 213 SKRRITLSTSGFVP--NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 T+ TSG+V +V +++ + L L +++N++ + + ++ Sbjct: 105 RGIHTTIDTSGYVSWDKFEKVRDKVDLFL-YDLKSMNNEIHKKYTGVENTI-ILENLELL 162 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI-PAKINLIPFNPWPGCEYLC- 328 Y I ++ +ND+ ++ IK + + ++NL+P++ +Y Sbjct: 163 SKY-----GHNIYLRIPIINDVNDNNKNIDETIKFISKLHLIQVNLLPYHKMGMDKYKRL 217 Query: 329 -----------SDQKDIVTFSECIKRSGYSSPI 350 + + +E K++G I Sbjct: 218 KMEYKLTGEEKPSDEKMNEIAEKFKQAGIKVKI 250 >gi|240142718|ref|YP_002967231.1| putative oxidoreductase [Methylobacterium extorquens AM1] gi|240012665|gb|ACS43890.1| Putative oxidoreductase [Methylobacterium extorquens AM1] Length = 377 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 58/150 (38%), Gaps = 20/150 (13%) Query: 225 VPNIARVGEEIGV----MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280 P+ R E + L + L AV+ ++R ++P PLE +A + Sbjct: 219 PPDDDRWFERMKASGIDALGMHLEAVTPEVRARIMPGKASVPLERYYEAFAAAVPVFGRG 278 Query: 281 RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVT- 336 +++ Y++ G+ D+P L + + L G+ ++PF P G + Sbjct: 279 QVS-TYIL-AGLGDTPEAILEMAERLVGLGVYPFVVPFVPISGTPLESHPAPGPDFMHAV 336 Query: 337 ---FSECIKRSGYSSPIRTPRGLDILAACG 363 ++ + ++ S DI A CG Sbjct: 337 LKPLADMLAQANLRST-------DIKAGCG 359 >gi|84393746|ref|ZP_00992494.1| pyruvate formate-lyase 1 activating enzyme [Vibrio splendidus 12B01] gi|84375608|gb|EAP92507.1| pyruvate formate-lyase 1 activating enzyme [Vibrio splendidus 12B01] Length = 246 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 40/246 (16%), Positives = 84/246 (34%), Gaps = 50/246 (20%) Query: 123 GCSLTCSFCYTGT-----QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C+ +T EEI+ + R + G G Sbjct: 29 GCLMRCMYCHNRDTWDLHDGKE--VTVEEIINEAKSYRHFMKASGGGITCSG-------- 78 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 GE + + V+ A+ + G+ L T+G++ V +E V Sbjct: 79 ----------GEAMLQPEFVRDFFQ-AAQAEGI-----HTCLDTNGYIRKHTEVVDE--V 120 Query: 238 MLAISLHAVS-NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 + A L + +R+ + +D R+ + ++ YV++ G D+P Sbjct: 121 LEASDLVMLDLKHMRDEIHHDFIGVSNRRTLDFARYLHKI--GKKTWIRYVIVPGYTDTP 178 Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIK 342 DA L + +K + KI L+P++ ++ ++ + + Sbjct: 179 EDAHLLGEFIKDMDNIEKIELLPYHKLGAHKWEALGYDYPLEGTNPPSKEKMDEIVAVLS 238 Query: 343 RSGYSS 348 + + Sbjct: 239 QYHSNV 244 >gi|148265485|ref|YP_001232191.1| radical SAM domain-containing protein [Geobacter uraniireducens Rf4] gi|146398985|gb|ABQ27618.1| Radical SAM domain protein [Geobacter uraniireducens Rf4] Length = 313 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 87/227 (38%), Gaps = 25/227 (11%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQV-LLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 C+ +C +C G I QV A + + + V G +I + Sbjct: 26 CTYSCVYCQVGRT----------IKTQVDRRAFYWPEEIAAEVENKVRVARENGEQIDYL 75 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 + GEP + N+ + + + +G+ RI + T+ + + V E + +S Sbjct: 76 TFVADGEPTLDI-NLAREIELLR-PLGI-----RIAVITNASLIWRSDVAEALRKANWVS 128 Query: 243 LHAVSNDLR-NILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDA 299 L + +R ++ +NR PL +D G + + E +++KG+ND+ Sbjct: 129 LK--VDTVREDVWRKLNRPSPLLEFMDLLTGMIGFAKRYGGELATETMLVKGLNDAEEHL 186 Query: 300 LNLIKILKGI-PAKINL-IPFNPWPGCEYLCSDQKDIVTFSECIKRS 344 L L + PAK L IP P ++ + + ++R Sbjct: 187 ELLADFLMALKPAKAYLAIPTRPPAELWVKPPSEETVNRAFQILRRK 233 >gi|227827543|ref|YP_002829323.1| tRNA-modifying enzyme [Sulfolobus islandicus M.14.25] gi|227830230|ref|YP_002832010.1| tRNA-modifying enzyme [Sulfolobus islandicus L.S.2.15] gi|229579045|ref|YP_002837443.1| tRNA-modifying enzyme [Sulfolobus islandicus Y.G.57.14] gi|229584746|ref|YP_002843248.1| tRNA-modifying enzyme [Sulfolobus islandicus M.16.27] gi|238619700|ref|YP_002914526.1| tRNA-modifying enzyme [Sulfolobus islandicus M.16.4] gi|284997653|ref|YP_003419420.1| Wyosine base formation [Sulfolobus islandicus L.D.8.5] gi|227456678|gb|ACP35365.1| Wyosine base formation domain protein [Sulfolobus islandicus L.S.2.15] gi|227459339|gb|ACP38025.1| Wyosine base formation domain protein [Sulfolobus islandicus M.14.25] gi|228009759|gb|ACP45521.1| Wyosine base formation domain protein [Sulfolobus islandicus Y.G.57.14] gi|228019796|gb|ACP55203.1| Wyosine base formation domain protein [Sulfolobus islandicus M.16.27] gi|238380770|gb|ACR41858.1| Wyosine base formation domain protein [Sulfolobus islandicus M.16.4] gi|284445548|gb|ADB87050.1| Wyosine base formation [Sulfolobus islandicus L.D.8.5] gi|323474594|gb|ADX85200.1| Wyosine base formation domain protein [Sulfolobus islandicus REY15A] gi|323477326|gb|ADX82564.1| Wyosine base formation domain protein [Sulfolobus islandicus HVE10/4] Length = 361 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 8/130 (6%) Query: 221 TSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280 TSG P+I EE L +SL A + ++ ++++ P S Sbjct: 173 TSGVRPDILASLEEEPTQLFVSLQAPNEIKHKMINRPVVANSWQLVMKTLEILPSFS--S 230 Query: 281 RITFEYVMLKGINDSPRDALNLIKILK-GIPAKINLIPFNPWPGCEYL-----CSDQKDI 334 + M+KG N S +DA K+++ +P I + + Y K+I Sbjct: 231 PTVIRFTMIKGYNMSEQDAREFAKLMEIAMPTYIEIKAYMHVGPSTYRLSRDAMPKHKEI 290 Query: 335 VTFSECIKRS 344 F++ + + Sbjct: 291 REFAKTLAQY 300 >gi|83591239|ref|YP_431248.1| radical SAM family protein [Moorella thermoacetica ATCC 39073] gi|83574153|gb|ABC20705.1| Radical SAM [Moorella thermoacetica ATCC 39073] Length = 473 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 83/228 (36%), Gaps = 35/228 (15%) Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168 P+ S LC+ C++ C +C+ E R L+ G ++ Sbjct: 108 PQPSLQALCLHVAHDCNMRCRYCFADGGPF-----GGE--------RGLMNRDTGYAALD 154 Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS---MGLSFSKRRITLSTSGFV 225 + + R + G GEPL NF V++ ++ + G S TL+T+G Sbjct: 155 LLFREAGNRPRVEVDFFG-GEPLLNFGVVRELVAYGREKAAAAGKGIS---FTLTTNGLA 210 Query: 226 --PNIARVGEEIGVMLAISLHAVSNDLRNILVPINR-----KYPLEMLIDACRHYPGLSN 278 P I GV + +SL D R + NR + E ++ +H+ Sbjct: 211 LSPEIENYLITEGVSVILSL-----DGRREVHDFNRPDAAGRGTYERVVPREQHFVASQG 265 Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 R + D D L+++++ G +++ P P EY Sbjct: 266 HRDYWVRGTYTRQNLDFTSDILHMVEL--GFR-YLSMEPVVAAPEAEY 310 >gi|227328163|ref|ZP_03832187.1| pyruvate formate lyase-activating enzyme 1 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 246 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 36/245 (14%), Positives = 77/245 (31%), Gaps = 48/245 (19%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T EE++ +V+ R + G G Sbjct: 29 GCLMRCLYCHNRDTWDTHGGKE--VTVEELMKEVVTYRHFMNASGGGVTASGGEAILQAE 86 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 + + E ++ D+ G + P I + + Sbjct: 87 FVRDWFRACKAEG----------INTCLDTNGF----------VRRYDPVIDELLDVSD- 125 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 ++ + L +++D+ LV ++ L+ Y N R YV++ G +D Sbjct: 126 LVMLDLKQMNDDIHQNLVGVSNHRTLD-----FARYLAKRNQ-RTWIRYVVVPGWSDDDA 179 Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKR 343 A L + K + KI L+P++ ++ + ++ Sbjct: 180 SAHKLGEFTKDMKNIEKIELLPYHELGKHKWIAMGEEYKLDGVKPPKADTMDRVKSILES 239 Query: 344 SGYSS 348 G+ Sbjct: 240 YGHKV 244 >gi|325479346|gb|EGC82442.1| six-Cys-in-45 modification radical SAM protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 460 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 43/217 (19%), Positives = 79/217 (36%), Gaps = 25/217 (11%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC++ C+L+C +C+ K + I + + I+ ++ S Sbjct: 96 ALCLNVAHTCNLSCEYCFAKGGKYSG---PDAI----------MTEEVARSAIDFLLENS 142 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIARV 231 +I G GEPL NFD VK ++S A TL+T+G + I + Sbjct: 143 GSHYNLDIDFFG-GEPLLNFDLVKDTVSYARSKEEEYNKHFNFTLTTNGLLLDDDVIDYL 201 Query: 232 GEEIG-VMLAISLHAV-SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 E + V+L++ ++ R L N K + ++ +++ + Sbjct: 202 NENMKNVVLSLDGRKEKHDEFRKTL---NGKGSFDTIVPKFQNFVNKRGDKEYYIRGTFT 258 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 D D + + G + +L P P EY Sbjct: 259 ANNLDFTEDLKTYLDL--GF-TRTSLEPVVGNPNEEY 292 >gi|262040998|ref|ZP_06014220.1| pyruvate formate-lyase 1-activating enzyme [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041692|gb|EEW42741.1| pyruvate formate-lyase 1-activating enzyme [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 246 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 40/249 (16%), Positives = 84/249 (33%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T EE++ +V+ R + G G Sbjct: 29 GCLMRCLYCHNRDTWDTHGGKE--ITVEELMKEVVTYRHFMNASGGGVTASGGEAILQAE 86 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 + + ++ G+ L T+GFV P I + E Sbjct: 87 FVHD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLE 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L +++++ L+ ++ LE Y N + YV++ G + Sbjct: 123 VTD-LVMLDLKQMNDEIHQNLIGVSNHRTLE-----FAQYLAKKN-INVWIRYVVVPGWS 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNP-------WPGCEYL-----CSDQKDIVTFSE 339 D A L + + + KI L+P++ G EY ++ + Sbjct: 176 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVHPPKKETMERVKG 235 Query: 340 CIKRSGYSS 348 +++ G+ Sbjct: 236 ILEQYGHKV 244 >gi|225016811|ref|ZP_03706003.1| hypothetical protein CLOSTMETH_00723 [Clostridium methylpentosum DSM 5476] gi|224950479|gb|EEG31688.1| hypothetical protein CLOSTMETH_00723 [Clostridium methylpentosum DSM 5476] Length = 266 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 47/276 (17%), Positives = 88/276 (31%), Gaps = 51/276 (18%) Query: 91 RFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEI 147 + + G +E+ + V Q GC L C FC+ T K R ++A+E+ Sbjct: 24 QMADQMKGRIHSVESFGAVDGPGIRFVVFLQ-GCPLRCLFCHNPDTWDGKAGREVSAQEL 82 Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207 + ++L R+ + V + GEPL + L Sbjct: 83 VDEILTYRNYIKKGG--------------------VTLSGGEPLLQAQFTAEVLR-LCKE 121 Query: 208 MGLSFSKRRITLSTSGFVPNIARVGEEIGV-MLAISLHAVSNDLRNILVPINRKYPLEML 266 GL + TSG +P + ML + + + D L + + + Sbjct: 122 NGL-----HTAVDTSGCIPLERALPALQQADMLLLDIKDIDPDDAKALTGMTNQNAIA-T 175 Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGC 324 +D C + +V++ G + L + L G K+ L+PF+ Sbjct: 176 LDYCEKVAK-----TVWVRHVVVPGYTLNYDKLERLAEFLSGYNCVEKVELLPFHKMGEY 230 Query: 325 EY------------LCSDQKDIVTFSECIKRSGYSS 348 ++ QK++ + G Sbjct: 231 KWEVLGEDYKLFDTEEPTQKEMAKVKGIFRSKGILV 266 >gi|261368422|ref|ZP_05981305.1| radical SAM domain protein [Subdoligranulum variabile DSM 15176] gi|282569543|gb|EFB75078.1| radical SAM domain protein [Subdoligranulum variabile DSM 15176] Length = 484 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 44/199 (22%), Positives = 73/199 (36%), Gaps = 28/199 (14%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L CS+C+ K E L+ G + ++ +V S Sbjct: 101 ALCLHVAHTCNLNCSYCFAAQGKFH-----GE--------AGLMSFETGKQALDFLVAHS 147 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSL---SIASDSMGLSFSKRRITLST--SGFVPNIA 229 R+ + G GEPL NF+ K+ + + G +F R TL+T G + Sbjct: 148 GTRRNLEVDFFG-GEPLMNFEVCKQLVAYARSIEKAAGKNF---RFTLTTNGIGLTDEVI 203 Query: 230 RVGEEIGVMLAISL---HAVSNDLRNILVPINRKYP--LEMLIDACRHYPGLSNARRITF 284 + + + +SL V++ R L N Y + + G R TF Sbjct: 204 QWANQECYNVVLSLDGRKEVNDRFRVDL-AGNGSYDRIVPKFQKLVKARGGKGYYMRGTF 262 Query: 285 EYVMLKGINDSPRDALNLI 303 + + ND A +L Sbjct: 263 THHNVDFTNDLFHMADDLG 281 >gi|284175641|ref|ZP_06389610.1| tRNA-modifying enzyme [Sulfolobus solfataricus 98/2] gi|261602540|gb|ACX92143.1| Wyosine base formation domain protein [Sulfolobus solfataricus 98/2] Length = 361 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 8/127 (6%) Query: 221 TSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280 TSG P+I EE L +SL A + ++ ++++ P S Sbjct: 173 TSGVRPDILASLEEEPTQLFVSLQAPNEIKHKMINRPVVANSWQLVMKTLEILPSFS--S 230 Query: 281 RITFEYVMLKGINDSPRDALNLIKILK-GIPAKINLIPFNPWPGCEYL-----CSDQKDI 334 + M+KG N S +DA K+++ +P I + + Y K+I Sbjct: 231 PTVIRFTMIKGYNMSEQDAKEFAKLMEIAMPTYIEIKAYMHVGPSTYRLSRDAMPKHKEI 290 Query: 335 VTFSECI 341 F++ + Sbjct: 291 REFAKIL 297 >gi|326790187|ref|YP_004308008.1| pyruvate formate-lyase activating enzyme [Clostridium lentocellum DSM 5427] gi|326540951|gb|ADZ82810.1| pyruvate formate-lyase activating enzyme [Clostridium lentocellum DSM 5427] Length = 241 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 39/236 (16%), Positives = 77/236 (32%), Gaps = 35/236 (14%) Query: 98 GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157 G IET + V +Q GC L C +C+ + Sbjct: 3 GRIHSIETCGAVDGPGLRYIVFTQ-GCPLRCKYCHNPD---------------TWKLQDG 46 Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK-SLSIASDSMGLSFSKRR 216 + + S + + V + GEP D V+ + GL Sbjct: 47 NEADTEELITDILKYKSFMKASNGGVTVSGGEPFLQADFVRDLFIKC--KENGL-----H 99 Query: 217 ITLSTSGFVPNIARVGEEIGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274 T+ TSG+V +I + + + + + + + PL+ + +H Sbjct: 100 TTIDTSGYV-DIENADPVLDYTDLVLLDIKSYNQ----NIYKNLTGVPLDRTLALAKHLE 154 Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYLC 328 I YV++ + D+ D L L+ + +I+++PF+ ++ Sbjct: 155 KR--GIPIWIRYVLVPNLTDNEEDIEALATFLETLTNVERIDILPFHKMGEYKWEQ 208 >gi|15897835|ref|NP_342440.1| tRNA-modifying enzyme [Sulfolobus solfataricus P2] gi|13814136|gb|AAK41230.1| Conserved hypothetical protein [Sulfolobus solfataricus P2] Length = 365 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 8/127 (6%) Query: 221 TSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280 TSG P+I EE L +SL A + ++ ++++ P S Sbjct: 177 TSGVRPDILASLEEEPTQLFVSLQAPNEIKHKMINRPVVANSWQLVMKTLEILPSFS--S 234 Query: 281 RITFEYVMLKGINDSPRDALNLIKILK-GIPAKINLIPFNPWPGCEYL-----CSDQKDI 334 + M+KG N S +DA K+++ +P I + + Y K+I Sbjct: 235 PTVIRFTMIKGYNMSEQDAKEFAKLMEIAMPTYIEIKAYMHVGPSTYRLSRDAMPKHKEI 294 Query: 335 VTFSECI 341 F++ + Sbjct: 295 REFAKIL 301 >gi|152969487|ref|YP_001334596.1| pyruvate formate lyase-activating enzyme 1 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206581035|ref|YP_002239448.1| pyruvate formate-lyase 1-activating enzyme [Klebsiella pneumoniae 342] gi|238893959|ref|YP_002918693.1| pyruvate formate lyase-activating enzyme 1 [Klebsiella pneumoniae NTUH-K2044] gi|288936299|ref|YP_003440358.1| pyruvate formate-lyase activating enzyme [Klebsiella variicola At-22] gi|290510646|ref|ZP_06550016.1| pyruvate formate-lyase 1-activating enzyme [Klebsiella sp. 1_1_55] gi|330014097|ref|ZP_08307854.1| pyruvate formate-lyase 1-activating enzyme [Klebsiella sp. MS 92-3] gi|150954336|gb|ABR76366.1| pyruvate formate lyase activating enzyme 1 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206570093|gb|ACI11869.1| pyruvate formate-lyase 1-activating enzyme [Klebsiella pneumoniae 342] gi|238546275|dbj|BAH62626.1| pyruvate formate lyase activating enzyme 1 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|288891008|gb|ADC59326.1| pyruvate formate-lyase activating enzyme [Klebsiella variicola At-22] gi|289777362|gb|EFD85360.1| pyruvate formate-lyase 1-activating enzyme [Klebsiella sp. 1_1_55] gi|328533278|gb|EGF60031.1| pyruvate formate-lyase 1-activating enzyme [Klebsiella sp. MS 92-3] Length = 246 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 41/249 (16%), Positives = 84/249 (33%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T EE++ +V+ R + G G Sbjct: 29 GCLMRCLYCHNRDTWDTHGGKE--ITVEELMKEVVTYRHFMNASGGGVTASGGEAILQAE 86 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 + + ++ G+ L T+GFV P I + E Sbjct: 87 FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLE 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L +++++ LV ++ LE Y N + YV++ G + Sbjct: 123 VTD-LVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAQYLAKKN-INVWIRYVVVPGWS 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNP-------WPGCEYL-----CSDQKDIVTFSE 339 D A L + + + KI L+P++ G EY ++ + Sbjct: 176 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVHPPKKETMERVKG 235 Query: 340 CIKRSGYSS 348 +++ G+ Sbjct: 236 ILEQYGHKV 244 >gi|261210513|ref|ZP_05924806.1| pyruvate formate-lyase activating enzyme [Vibrio sp. RC341] gi|260840298|gb|EEX66869.1| pyruvate formate-lyase activating enzyme [Vibrio sp. RC341] Length = 246 Score = 51.4 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 40/250 (16%), Positives = 85/250 (34%), Gaps = 58/250 (23%) Query: 123 GCSLTCSFCY------TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176 GC C +C+ T T R +T EEI+ + R + G G Sbjct: 29 GCLFRCKYCHNRDTWDTHTG---REVTVEEIIKEAKSYRHFMNASGGGITCSG------- 78 Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVG 232 GE + + V+ A L T+G++ P I V Sbjct: 79 -----------GEAMLQPEFVRDFFRAAKAE------GIHTCLDTNGYIRKFTPVIDEVL 121 Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 E ++ + + + +++ L+ ++ K +D R+ + ++ YV++ G Sbjct: 122 EVTD-LVMLDIKQMDDEIHQDLIGVSNK----RTLDFARYLHQI--GQKTWLRYVVVPGY 174 Query: 293 NDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFS 338 D A L + +K + KI L+P++ ++ ++ + Sbjct: 175 TDDEASAHQLGEFIKDMENIEKIELLPYHKLGAHKWEAMGEEYPLEGVNPPSKETMDKIV 234 Query: 339 ECIKRSGYSS 348 +++ + Sbjct: 235 AILEQYHSNV 244 >gi|311280182|ref|YP_003942413.1| pyruvate formate-lyase activating enzyme [Enterobacter cloacae SCF1] gi|308749377|gb|ADO49129.1| pyruvate formate-lyase activating enzyme [Enterobacter cloacae SCF1] Length = 246 Score = 51.4 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 33/249 (13%), Positives = 83/249 (33%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T +E++ +V+ R + G G Sbjct: 29 GCLMRCLYCHNRDTWDTHGGKE--VTVDELMKEVVTYRHFMNASGGGVTASGGEAILQAE 86 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 + + ++ G+ L T+GFV P I + E Sbjct: 87 FVRD---------------WFRACR----KEGI-----HTCLDTNGFVRRYDPVIDELLE 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L +++++ LV ++ ++ ++ + YV++ G + Sbjct: 123 VTD-LVMLDLKQMNDEIHQNLVGVSNH----RTLEFAKYISAK--GIKTWIRYVVVPGWS 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 D A L + + + KI L+P++ ++ ++ + Sbjct: 176 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 235 Query: 340 CIKRSGYSS 348 +++ G+ Sbjct: 236 ILEQYGHKV 244 >gi|237742865|ref|ZP_04573346.1| Fe-S oxidoreductase [Fusobacterium sp. 4_1_13] gi|229430513|gb|EEO40725.1| Fe-S oxidoreductase [Fusobacterium sp. 4_1_13] Length = 284 Score = 51.4 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 39/237 (16%), Positives = 81/237 (34%), Gaps = 38/237 (16%) Query: 124 CSLTCSFC---YTGTQKLVRN--LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 C+L C FC T +L R EIL ++ + Sbjct: 28 CNLNCIFCECGATKKIQLERQRFKNMNEILNEIQSVLKDIKPDY---------------- 71 Query: 179 ISNIVMMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236 I G GEP + D N+ K++ G +I L T+ + +V E+ Sbjct: 72 ---ITFSGSGEPTLSLDLGNISKAIKEDLKYKG------KICLITNSLLLADKQVINELE 122 Query: 237 V--MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 ++ +L+ + D+ +V + + ++ + + + +I E +L+ IND Sbjct: 123 YIDLIIPTLNTLKQDIFEKIVRPDYRTSVDEIRKGFINLNNSNYKGKIWIEIFILENIND 182 Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWP----GCEYLCSDQKDIVTFSECIKRSGYS 347 + + + + L + + I N + I+ + ++ G Sbjct: 183 NEENFIEIANFLNSENIRYDKIQLNTIDRVGAERDLKAISFDKILKAKKILEEYGLH 239 >gi|146311079|ref|YP_001176153.1| pyruvate formate lyase-activating enzyme 1 [Enterobacter sp. 638] gi|145317955|gb|ABP60102.1| pyruvate formate-lyase activating enzyme [Enterobacter sp. 638] Length = 246 Score = 51.4 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 35/249 (14%), Positives = 84/249 (33%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T EE++ +V+ R + G G Sbjct: 29 GCLMRCLYCHNRDTWDTHGGKE--ITVEELMKEVVTYRHFMNASGGGVTASGGEAILQAE 86 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 + + ++ G+ L T+GFV P I + E Sbjct: 87 FVRD---------------WFRACR----KEGI-----HTCLDTNGFVRRYDPVIDELLE 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L +++++ LV ++ ++ ++ G + YV++ G + Sbjct: 123 VTD-LVMLDLKQMNDEIHQNLVGVSNH----RTLEFAKYIAGK--GIKTWIRYVVVPGWS 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 D A L + + + KI L+P++ ++ ++ + Sbjct: 176 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 235 Query: 340 CIKRSGYSS 348 +++ G+ Sbjct: 236 ILEQYGHKV 244 >gi|261868599|ref|YP_003256521.1| pyruvate formate-lyase 1-activating enzyme [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413931|gb|ACX83302.1| pyruvate formate-lyase 1-activating enzyme [Aggregatibacter actinomycetemcomitans D11S-1] Length = 246 Score = 51.4 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 79/245 (32%), Gaps = 48/245 (19%) Query: 123 GCSLTCSFCYTGT-----QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C+ +T EE++ +V+ R + G G Sbjct: 29 GCLMRCKYCHNRDTWDLHGGKE--ITVEELMKEVVTYRHFMNASGGGVTASGGEAILQAE 86 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 + + E + D+ G + I + + + Sbjct: 87 FVRDWFRACKAEG----------IHTCLDTNGF----------VRHYDHVIDELIDVTDL 126 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 +L + L +++ + L+ + K LE Y N + YV++ G DS Sbjct: 127 VL-LDLKELNDKVHQNLIGVPNKRTLE-----FAKYLQKRNQ-PVWIRYVVVPGYTDSDH 179 Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKR 343 D L + ++G+ K+ L+P++ ++ ++ + ++ Sbjct: 180 DVHLLGQFIEGMTNIEKVELLPYHRLGAHKWAAMGEKYELEDVKPPTKESLEHIKTILEG 239 Query: 344 SGYSS 348 G+ Sbjct: 240 YGHIV 244 >gi|218546596|gb|ACK98944.1| predicted Fe-S-cluster redox enzyme [Aeromonas bestiarum] Length = 44 Score = 51.4 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%) Query: 348 SPIRTPRGLDILAACGQLKSLS-KRIPKVPRQEMQITG 384 +R RG DI AACGQL R + + MQ G Sbjct: 1 VIVRKTRGDDIDAACGQLVGEVIDRTKRTMKNRMQQEG 38 >gi|295110857|emb|CBL24810.1| Pyruvate-formate lyase-activating enzyme [Ruminococcus obeum A2-162] Length = 245 Score = 51.4 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 38/243 (15%), Positives = 80/243 (32%), Gaps = 55/243 (22%) Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC++ C FC+ T + T ++L Q L ++ G+ G Sbjct: 31 GCAMRCQFCHNPDTWKMGEGQQYTPSQLLKQALRYKNYWGNKGG---------------- 74 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEE 234 I + G GEPL D + + +A TL TS P ++ E Sbjct: 75 --ITVSG-GEPLLQIDFLIEFFRMAKAE------GVHTTLDTSANPYTEKEPFYSKWLEL 125 Query: 235 IGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 + + + + + + L + K ++ R + + + +V++ G Sbjct: 126 MKYTDLVLLDIKQIDEEEHIKLTGQSNKN----ILTMARKLSDM--GKPMWIRHVLVPGG 179 Query: 293 NDSPRDALNLIKILKGIPA--KINLIPFN-------PWPGCEY-----LCSDQKDIVTFS 338 +D L + + ++ ++P++ G Y ++ I Sbjct: 180 SDKDEYLHRLADFIHTLKTVERVEVLPYHTLGVFKWEQLGIPYPLEGVRPPSEERINNAR 239 Query: 339 ECI 341 E + Sbjct: 240 EIL 242 >gi|56413979|ref|YP_151054.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362902|ref|YP_002142539.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56128236|gb|AAV77742.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094379|emb|CAR59893.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 265 Score = 51.4 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 37/249 (14%), Positives = 84/249 (33%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T E+++ +V+ R + G G Sbjct: 48 GCLMRCLYCHNRDTWDTHGGKE--ITVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAE 105 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 + + ++ G+ L T+GFV P I + + Sbjct: 106 FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLD 141 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L +++++ LV ++ LE Y N ++ YV++ G + Sbjct: 142 VTD-LVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAQYLSKKN-VKVWIRYVVVPGWS 194 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 D A L + + + KI L+P++ ++ ++ I Sbjct: 195 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETIERVKG 254 Query: 340 CIKRSGYSS 348 +++ G+ Sbjct: 255 ILEQYGHKV 263 >gi|228949221|ref|ZP_04111488.1| Radical SAM domain protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228810447|gb|EEM56801.1| Radical SAM domain protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 468 Score = 51.4 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 51/307 (16%), Positives = 104/307 (33%), Gaps = 51/307 (16%) Query: 58 QEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLC 117 +E+R + E++ DG + + I+ + P LC Sbjct: 60 KELRETIADI----------EELKRDG------KLFTEDDYKDLSIDLINRPT-YVKALC 102 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 ++ C+L+C +C+ K N R+++ G I+ ++ S Sbjct: 103 LNVAHTCNLSCEYCFASQGKYNGN-------------RAIMSYEVGKRAIDFLLENSGNH 149 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 + ++ G GEPL + VK+ ++ A + T +T+G + + +EI Sbjct: 150 RNLDVDFFG-GEPLMAWKTVKQIVAYARNKEKEYKKTFHFTFTTNGML-----LNDEITD 203 Query: 238 MLAISLHAVSNDL--RNI-----LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 L +H V L R +N K ++ + + + Sbjct: 204 FLNQEMHNVVLSLDGRKKVHDYLRKTVNGKGSYNHIVPKFQEFVEKRGDKEYYVRGTYTH 263 Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK--DIVTFSECIKRSGYSS 348 D D ++ + G KI++ P P Y ++ +I E + + + Sbjct: 264 NNVDFTNDIYHIADL--GFN-KISMEPVICNPLEPYALCEEDLLEIYNQYEILSKEMLN- 319 Query: 349 PIRTPRG 355 R +G Sbjct: 320 --REEKG 324 >gi|218546608|gb|ACK98951.1| predicted Fe-S-cluster redox enzyme [Aeromonas salmonicida subsp. smithia] gi|218546614|gb|ACK98955.1| predicted Fe-S-cluster redox enzyme [Aeromonas hydrophila] Length = 44 Score = 51.4 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%) Query: 348 SPIRTPRGLDILAACGQLKSLS-KRIPKVPRQEMQITG 384 +R RG DI AACGQL R + + MQ G Sbjct: 1 VIVRKTRGDDIDAACGQLVGEVIDRTKRTMKNRMQQDG 38 >gi|325662287|ref|ZP_08150902.1| hypothetical protein HMPREF0490_01640 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471539|gb|EGC74760.1| hypothetical protein HMPREF0490_01640 [Lachnospiraceae bacterium 4_1_37FAA] Length = 303 Score = 51.4 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 14/83 (16%) Query: 281 RITFEYVMLKGINDSPRDALNLIKILKGIPAK--INLIPFNPWPGCEYLC---------- 328 RI ++ G+ND+ + +I LK + INL+P++ G +Y Sbjct: 217 RIYIRIPVIGGVNDTEEEMEAMITFLKQSISVSQINLLPYHNIAGGKYDKLDIRYKGEAF 276 Query: 329 --SDQKDIVTFSECIKRSGYSSP 349 ++ + F ++G+++ Sbjct: 277 TIPPKEQMEAFQRQFIQNGFANT 299 >gi|291459250|ref|ZP_06598640.1| radical SAM domain protein [Oribacterium sp. oral taxon 078 str. F0262] gi|291418504|gb|EFE92223.1| radical SAM domain protein [Oribacterium sp. oral taxon 078 str. F0262] Length = 461 Score = 51.4 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 66/200 (33%), Gaps = 28/200 (14%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L CS+C+ + L+ G ++ ++ S Sbjct: 98 ALCLLVSHRCNLNCSYCFASQGSFCG-------------KQGLMSFETGKRALDFLIENS 144 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSL---SIASDSMGLSFSKRRITLSTSG--FVPNIA 229 R+ + G GEPL NF+ +K + G +F R TL+T+G + Sbjct: 145 GSRRNLEVDFFG-GEPLVNFEVCRKLVSYARSIEKEHGKNF---RFTLTTNGVSVTDEVI 200 Query: 230 RVGEEIGVMLAISL---HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286 + +SL V++ R V + E ++ R + R Sbjct: 201 EWANRECYNVVLSLDGRREVNDRFR---VDSGGRGSYERIVPNFRKFVKARGDRGYYMRG 257 Query: 287 VMLKGINDSPRDALNLIKIL 306 D D ++ L Sbjct: 258 TFTHYNTDFTEDIFHMADAL 277 >gi|237730866|ref|ZP_04561347.1| pyruvate formate-lyase 1 activating enzyme [Citrobacter sp. 30_2] gi|291085629|ref|ZP_06353548.2| pyruvate formate-lyase 1-activating enzyme [Citrobacter youngae ATCC 29220] gi|226906405|gb|EEH92323.1| pyruvate formate-lyase 1 activating enzyme [Citrobacter sp. 30_2] gi|291070473|gb|EFE08582.1| pyruvate formate-lyase 1-activating enzyme [Citrobacter youngae ATCC 29220] Length = 255 Score = 51.4 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 36/249 (14%), Positives = 84/249 (33%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T +E++ +V+ R + G G Sbjct: 38 GCLMRCLYCHNRDTWDTHGGKE--VTVDELMKEVVTYRHFMNASGGGVTASGGEAILQAE 95 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 + + ++ G+ L T+GFV P I + E Sbjct: 96 FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLE 131 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L +++++ LV ++ LE Y + ++ YV++ G + Sbjct: 132 VTD-LVMLDLKQMNDEIHQNLVGVSNHRTLE-----FARYLSNKD-IKVWIRYVVVPGWS 184 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 D A L + + + KI L+P++ ++ ++ + Sbjct: 185 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 244 Query: 340 CIKRSGYSS 348 +++ G+ Sbjct: 245 ILEQYGHKV 253 >gi|289423115|ref|ZP_06424930.1| arylsulfatase regulator [Peptostreptococcus anaerobius 653-L] gi|289156446|gb|EFD05096.1| arylsulfatase regulator [Peptostreptococcus anaerobius 653-L] Length = 457 Score = 51.0 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 74/200 (37%), Gaps = 29/200 (14%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC++ C+L C +C+ L+ G + I+ ++ S Sbjct: 95 ALCLNVAHDCNLKCKYCFAKQGDFGG-------------KAELMPLEVGKKAIDYLIANS 141 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSL----SIASDSMGLSFSKRRITLSTSGFV---PN 227 RK I G GEPL N++ V K+L G + R T++T+G + Sbjct: 142 GSRKNLEIDFFG-GEPLMNWE-VVKALVAYGREVEKPAGKNI---RYTITTNGVLLDDEK 196 Query: 228 IARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF-E 285 I + E + V+L++ ND + + +N K ++++ + + + Sbjct: 197 IDFINEHMHNVVLSLDGRKEVND--GMRLTLNDKGSYDLIVPKFQKLVAQRPKDKYYYVR 254 Query: 286 YVMLKGINDSPRDALNLIKI 305 + D +D + + Sbjct: 255 GTFTRDNLDFSKDVNHFYDL 274 >gi|251789946|ref|YP_003004667.1| pyruvate formate lyase-activating enzyme 1 [Dickeya zeae Ech1591] gi|247538567|gb|ACT07188.1| pyruvate formate-lyase activating enzyme [Dickeya zeae Ech1591] Length = 246 Score = 51.0 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 42/249 (16%), Positives = 82/249 (32%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T EE++ +V+ R + G Sbjct: 29 GCLMRCLYCHNRDTWDTHGGKE--VTVEELMKEVVTYRHFMNASGGG------------- 73 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 V GE + + V+ A G++ L T+GFV P I + + Sbjct: 74 -----VTASGGEAILQAEFVRDWFR-ACHEQGIN-----TCLDTNGFVRRYDPVIDELLD 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L +++++ LV ++ LE Y N R YV++ + Sbjct: 123 VTD-LVMLDLKQLNDEVHQNLVGVSNHRTLE-----FARYLAKRNQ-RTWIRYVVVPDWS 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 D A L + K + KI L+P++ ++ + Sbjct: 176 DDDASAHLLGEFTKEMSNIEKIELLPYHELGKHKWTAMGEEYKLDGIKPPKADTMDRIKS 235 Query: 340 CIKRSGYSS 348 + G+ Sbjct: 236 ILTSYGHKV 244 >gi|226330724|ref|ZP_03806242.1| hypothetical protein PROPEN_04644 [Proteus penneri ATCC 35198] gi|225201519|gb|EEG83873.1| hypothetical protein PROPEN_04644 [Proteus penneri ATCC 35198] Length = 215 Score = 51.0 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 58/151 (38%), Gaps = 25/151 (16%) Query: 216 RITLSTSGFV----PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 L T+GFV P I + + ++ + L V++++ LV ++ + LE Sbjct: 70 HTCLDTNGFVRRYDPVIDELMDATD-LVMLDLKQVNDEIHQKLVGVSNQRTLE-----FA 123 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY--- 326 Y ++ YV++ G +D A L + +K + K+ L+P++ ++ Sbjct: 124 RYLAKR-GQKTWVRYVVVPGWSDDDDSAHRLGEFIKDMKNIEKVELLPYHELGKHKWVAL 182 Query: 327 ---------LCSDQKDIVTFSECIKRSGYSS 348 ++ + ++ G+ Sbjct: 183 GEEYKLDGIHPPSKETMENVKSILESYGHKV 213 >gi|90579339|ref|ZP_01235149.1| putative pyruvate formate-lyase 1 activating enzyme [Vibrio angustum S14] gi|90440172|gb|EAS65353.1| putative pyruvate formate-lyase 1 activating enzyme [Vibrio angustum S14] Length = 246 Score = 51.0 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 36/243 (14%), Positives = 83/243 (34%), Gaps = 44/243 (18%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C +C+ + E + +++ F Sbjct: 29 GCLMRCKYCH-NRDTWDTHGGREATVDELMHEAKSYRHFMNSSGGG-------------- 73 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM--L 239 V GE + + V+ A+ + G+ L T+G++ V +E + + Sbjct: 74 VTASGGEAMLQPEFVRDFFR-AAQAEGI-----HTCLDTNGYIRKHTDVVDEVLDATDLV 127 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 + L + +++ LV ++ K ++D R+ ++ YV++ G D A Sbjct: 128 MLDLKQMDDNIHQNLVGVSNK----RVLDFARYLHQR--GQKTWIRYVVVPGYTDDEHSA 181 Query: 300 LNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKRSG 345 L + +K + KI L+P++ ++ ++ + E + G Sbjct: 182 HQLGEFIKDMDNIEKIELLPYHQLGEHKWEAMGFEYPLAGVKPPKKETMEAIKEILSSYG 241 Query: 346 YSS 348 + Sbjct: 242 HKV 244 >gi|34762773|ref|ZP_00143761.1| Fe-S OXIDOREDUCTASE (1.8.-.-) [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887574|gb|EAA24655.1| Fe-S OXIDOREDUCTASE (1.8.-.-) [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 284 Score = 51.0 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 39/237 (16%), Positives = 80/237 (33%), Gaps = 38/237 (16%) Query: 124 CSLTCSFC---YTGTQKLVRN--LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 C+L C FC T +L R EIL ++ + Sbjct: 28 CNLNCIFCECGATKKIQLERQRFKNMNEILNEIQSVLKDIKPDY---------------- 71 Query: 179 ISNIVMMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236 I G GEP + D N+ K++ G +I L T+ + +V E+ Sbjct: 72 ---ITFSGSGEPTLSLDLGNISKAIKEDLKYKG------KICLITNSLLLADKQVINELE 122 Query: 237 V--MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 ++ +L+ + D+ +V + + ++ + + + +I E +L+ IND Sbjct: 123 YIDLIIPTLNTLKQDIFEKIVRPDYRTSVDEIRKGFINLNNSNYKGKIWIEIFILENIND 182 Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWP----GCEYLCSDQKDIVTFSECIKRSGYS 347 + + + + L + + I N I+ + ++ G Sbjct: 183 NEENFIEIANFLNSENIRYDKIQLNTIDRVGAERNLKAISFDKILKAKKILEEYGLH 239 >gi|218781436|ref|YP_002432754.1| radical SAM domain protein [Desulfatibacillum alkenivorans AK-01] gi|218762820|gb|ACL05286.1| Radical SAM domain protein [Desulfatibacillum alkenivorans AK-01] Length = 427 Score = 51.0 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 82/206 (39%), Gaps = 28/206 (13%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+ C C + + + ++ + P ++I + + + R + +V Sbjct: 198 CNARCLGCLSLQKD-----------SPIPHSQDRINFTPTSQEIAQVALEHLSRVKNGVV 246 Query: 184 MMGMG---EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI-ARVGEEIGVML 239 G G EPL + ++++ + S I L+++G P++ + + + Sbjct: 247 SFGQGCEGEPLLATKVIAPAIAMIREQT----SDGTINLNSNGSRPDLLQQCLDSGLDSI 302 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 +S+++V + + Y + ++ + G ++ Y+ + G DSP ++ Sbjct: 303 RVSMNSVRPECYEAYFRPS--YDFKDVLKSID-MAGFRGKW-VSINYLNMPGFTDSPEES 358 Query: 300 LNLIKILKGIPAKINLIPF---NPWP 322 +K LK P +N+I + N P Sbjct: 359 EAFLKFLKDHP--VNMIQWRNMNFNP 382 >gi|307690701|ref|ZP_07633147.1| pyruvate formate-lyase activating enzyme [Clostridium cellulovorans 743B] Length = 229 Score = 51.0 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 38/238 (15%), Positives = 82/238 (34%), Gaps = 45/238 (18%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L C +C+ P + + K Sbjct: 17 GCNLRCLYCHNPD---------------TWACNGGTEYTPEQLLKKIVRFKPYFEKSGGG 61 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLA 240 V GEPL ++ + ++L G+ + T+G + V+L Sbjct: 62 VTFSGGEPLLQYNFLIEALK-LCKENGI-----HTAIDTAGVGMGNYEEVLKYTDLVLLD 115 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 I + ++++ + + ++A ++ + ++ +V++ GIND+ D L Sbjct: 116 IKHY---DEIKYKEITGRDNSEFKKFLEALKN-----SNSKVWIRHVVVPGINDTKEDVL 167 Query: 301 NLIKILKGIPA--KINLIPFN-------PWPGCEY-----LCSDQKDIVTFSECIKRS 344 L + +K IP K++L+P++ G EY ++ +K + Sbjct: 168 ALCEYIKDIPRIEKVDLLPYHVLGVNKYDVMGIEYRLKDLQPMSKEKAEELKAFLKEN 225 >gi|300716075|ref|YP_003740878.1| pyruvate formate lyase activating enzyme 1 [Erwinia billingiae Eb661] gi|299061911|emb|CAX59027.1| Pyruvate formate lyase activating enzyme 1 [Erwinia billingiae Eb661] Length = 246 Score = 51.0 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 45/249 (18%), Positives = 86/249 (34%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T EE++ V+ R + G Sbjct: 29 GCLMRCLYCHNRDTWDTHGGKE--ITVEELMKDVVSYRHFMNASGGG------------- 73 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 V GE + + V+ A + G++ L T+GFV P I + E Sbjct: 74 -----VTASGGEAILQAEFVRDWFR-ACHAEGIN-----TCLDTNGFVRRYDPVIDELLE 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L +++D+ +LV ++ L+ Y R YV++ G + Sbjct: 123 VTD-LVMLDLKQINDDVHQVLVGVSNHRTLD-----FARYLAKK-KIRTWIRYVVVPGYS 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNP-------WPGCEYL-----CSDQKDIVTFSE 339 D A L + + + KI L+P++ G EY + + Sbjct: 176 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVHPPKAETMDRVKS 235 Query: 340 CIKRSGYSS 348 ++ G+ Sbjct: 236 ILEGYGHKV 244 >gi|315925707|ref|ZP_07921916.1| pyruvate formate-lyase activating enzyme [Pseudoramibacter alactolyticus ATCC 23263] gi|315621025|gb|EFV00997.1| pyruvate formate-lyase activating enzyme [Pseudoramibacter alactolyticus ATCC 23263] Length = 251 Score = 51.0 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 27/214 (12%), Positives = 68/214 (31%), Gaps = 28/214 (13%) Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 LA+ E + R+ + + GEPL + + I + Sbjct: 48 LAQKGKKMTVQQVIREVKKDAAYYRRTGGGITISGGEPLMQYR--FTA-EILKAGQAQGW 104 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 + T+G+ A + + + + A +++L ++ +I Sbjct: 105 ---NTAIETTGYTYEEAALDAVLPYLDLALMDAKAPNDELHKKFTGVSN-----EVIKKN 156 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEY--- 326 I + G+N S + K + K ++L+P++ +Y Sbjct: 157 ARRIAKEAGNTI-IRVPTIPGVNASAETIREIADFAKDLGVKEVHLLPYHKLGENKYHLM 215 Query: 327 ----------LCSDQKDIVTFSECIKRSGYSSPI 350 +++++ F + ++ +G + I Sbjct: 216 GLEYKMPEDTKTPNREEMAAFKKVVESAGLACKI 249 >gi|294784683|ref|ZP_06749971.1| Fe-S oxidoreductase [Fusobacterium sp. 3_1_27] gi|294486397|gb|EFG33759.1| Fe-S oxidoreductase [Fusobacterium sp. 3_1_27] Length = 284 Score = 51.0 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 39/237 (16%), Positives = 80/237 (33%), Gaps = 38/237 (16%) Query: 124 CSLTCSFC---YTGTQKLVRN--LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 C+L C FC T +L R EIL ++ + Sbjct: 28 CNLNCIFCECGATKKIQLERQRFKNMNEILNEIQSVLKDIKPDY---------------- 71 Query: 179 ISNIVMMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236 I G GEP + D N+ K++ G +I L T+ + +V E+ Sbjct: 72 ---ITFSGSGEPTLSLDLGNISKAIKEDLKYKG------KICLITNSLLLADKQVINELE 122 Query: 237 V--MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 ++ +L+ + D+ +V + + ++ + + + +I E +L+ IND Sbjct: 123 YIDLIIPTLNTLKQDIFEKIVRPDYRTSVDEIRKGFINLNNSNYKGKIWIEIFILENIND 182 Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWP----GCEYLCSDQKDIVTFSECIKRSGYS 347 + + + + L + + I N I+ + ++ G Sbjct: 183 NEENFIEIANFLNSENIRYDKIQLNTIDRVGAERNLKAISFDKILKAKKILEEYGLH 239 >gi|293391864|ref|ZP_06636198.1| pyruvate formate-lyase 1-activating enzyme [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952398|gb|EFE02517.1| pyruvate formate-lyase 1-activating enzyme [Aggregatibacter actinomycetemcomitans D7S-1] Length = 246 Score = 51.0 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 35/244 (14%), Positives = 80/244 (32%), Gaps = 48/244 (19%) Query: 123 GCSLTCSFCYTGT-----QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C+ +T EE++ +V+ R + G G Sbjct: 29 GCLMRCKYCHNRDTWDLHGGKE--ITVEELMKEVVTYRHFMNATGGGVTASGGEAILQAE 86 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 + + E + D+ G + I + + + Sbjct: 87 FVRDWFRACKAEG----------IHTCLDTNGF----------VRHYDHVIDELIDVTDL 126 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 +L + L +++ + L+ + K LE Y N + YV++ G DS Sbjct: 127 VL-LDLKELNDKVHQNLIGVPNKRTLE-----FAKYLRKRNQ-PVWIRYVVVPGYTDSDH 179 Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKR 343 D L + ++G+ K+ L+P++ ++ ++ + ++ Sbjct: 180 DVHLLGQFIEGMTNIEKVELLPYHRLGAHKWAAMGEKYELEDVKPPTKESLEHIKTILEG 239 Query: 344 SGYS 347 G++ Sbjct: 240 YGHT 243 >gi|315652215|ref|ZP_07905210.1| radical SAM domain protein [Eubacterium saburreum DSM 3986] gi|315485521|gb|EFU75908.1| radical SAM domain protein [Eubacterium saburreum DSM 3986] Length = 472 Score = 51.0 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 70/195 (35%), Gaps = 20/195 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L C +C+ E + R+L+ G ++ +V S Sbjct: 116 ALCLHIAHDCNLACKYCFAQE---------GEYHGR----RALMSFDIGKRALDFLVANS 162 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARV- 231 RK + G GEPL N+ VK+ + + K R T++T+G + I Sbjct: 163 GNRKNLEVDFFG-GEPLMNWQVVKELVKYGRSLEEPNNKKFRFTITTNGMLLNDEIMEFC 221 Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 E V+L++ ND+ + K + ++ + + + Sbjct: 222 NKEMSNVVLSLDGRKEVNDI--MRPTRGGKGSYDTIVPKFVKFAKSRGTKDYYIRGTFTR 279 Query: 291 GINDSPRDALNLIKI 305 + +D L+ + Sbjct: 280 NNLEFSKDVLHFADL 294 >gi|253688115|ref|YP_003017305.1| pyruvate formate-lyase activating enzyme [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754693|gb|ACT12769.1| pyruvate formate-lyase activating enzyme [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 246 Score = 50.7 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 36/245 (14%), Positives = 77/245 (31%), Gaps = 48/245 (19%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T EE++ +V+ R + G G Sbjct: 29 GCLMRCLYCHNRDTWDTHGGKE--VTVEELMKEVVTYRHFMNASGGGVTASGGEAILQAE 86 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 + + E ++ D+ G + P I + + Sbjct: 87 FVRDWFRACKAEG----------INTCLDTNGF----------VRRYDPVIDELLDVSD- 125 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 ++ + L +++D+ LV ++ L+ Y N R YV++ G +D Sbjct: 126 LVMLDLKQMNDDIHQNLVGVSNHRTLD-----FARYLAKRNQ-RTWIRYVVVPGWSDDDA 179 Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKR 343 A L + K + KI L+P++ ++ + ++ Sbjct: 180 SAHKLGEFTKDMTNIEKIELLPYHELGKHKWIAMGEEYKLDGVKPPKADTMDRIKSILES 239 Query: 344 SGYSS 348 G+ Sbjct: 240 YGHKV 244 >gi|258592679|emb|CBE68988.1| Radical SAM domain protein [NC10 bacterium 'Dutch sediment'] Length = 314 Score = 50.7 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 39/204 (19%), Positives = 77/204 (37%), Gaps = 37/204 (18%) Query: 124 CSLTCSFCYTGTQKLVRN-----LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 C+ C +C G + N + ++I+ QV A ++ + Sbjct: 27 CNWNCVYCQLGRSTPMINERRDYVPPDDIIAQVKEALAVHRPG----------------E 70 Query: 179 ISNIVMMGMGEP-LCN-FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236 I + +G GEP L + + + + +D + + T+G + V EE+ Sbjct: 71 IDWVTFVGSGEPTLHASLGKMIRQVKVLTD--------IPVAVITNGSLLYRPEVREELA 122 Query: 237 VMLAIS--LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 A+ L A + L + E L+D + + ++ E +++KG+ND Sbjct: 123 AADAVLPTLDAGTESLYRKINRPWPDLSFERLVDGLIAF-RREFSGKMWIEIMLIKGVND 181 Query: 295 SPRDALNLIKILKGIP---AKINL 315 + +L +L+ I INL Sbjct: 182 TETALKDLAAVLRRIGPDEVHINL 205 >gi|156934609|ref|YP_001438525.1| pyruvate formate lyase-activating enzyme 1 [Cronobacter sakazakii ATCC BAA-894] gi|156532863|gb|ABU77689.1| hypothetical protein ESA_02443 [Cronobacter sakazakii ATCC BAA-894] Length = 246 Score = 50.7 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 34/249 (13%), Positives = 83/249 (33%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T EE++ +V+ R + G G Sbjct: 29 GCLMRCLYCHNRDTWDTHGGKE--ITVEELMKEVVTYRHFMNASGGGVTASGGEAILQAE 86 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 + + ++ G+ L T+GFV P I + E Sbjct: 87 FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLE 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L +++++ LV ++ ++ ++ + YV++ G + Sbjct: 123 VTD-LVMLDLKQMNDEIHQNLVGVSNH----RTLEFAKYISAK--GIKTWIRYVVVPGWS 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 D A L + + + KI L+P++ ++ ++ + Sbjct: 176 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 235 Query: 340 CIKRSGYSS 348 +++ G+ Sbjct: 236 ILEQYGHKV 244 >gi|228912462|ref|ZP_04076141.1| Radical SAM domain protein [Bacillus thuringiensis IBL 200] gi|228847177|gb|EEM92152.1| Radical SAM domain protein [Bacillus thuringiensis IBL 200] Length = 468 Score = 50.7 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 52/307 (16%), Positives = 105/307 (34%), Gaps = 51/307 (16%) Query: 58 QEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLC 117 +E+R + E++ DG + + I+ + P LC Sbjct: 60 KEIRETIADI----------EELKRDG------KLFTDDDYKDLSIDLINRPT-YVKALC 102 Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 ++ C+L+C +C+ K N R+++ G I+ ++ S Sbjct: 103 LNVAHTCNLSCEYCFASQGKYNGN-------------RAIMSYEVGKRAIDFLLENSGNH 149 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 + ++ G GEPL + VK+ ++ A + R T +T+G + + +EI Sbjct: 150 RNLDVDFFG-GEPLMAWKTVKQIVAYARNKEEEYKKTFRFTFTTNGML-----LNDEITD 203 Query: 238 MLAISLHAVSNDL--RNI-----LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 L +H V L R +N K ++ + + + Sbjct: 204 FLNQDMHNVVLSLDGRKKVHDYLRKTVNGKGSYNHIVPKFKEFVEKRGDKEYYVRGTYTH 263 Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK--DIVTFSECIKRSGYSS 348 D D ++ + G KI++ P P Y ++ +I E + + + Sbjct: 264 NNVDFTNDIYHIADL--GFN-KISMEPVICNPREPYALGEEDLLEIYNQYEILSKEMLN- 319 Query: 349 PIRTPRG 355 R +G Sbjct: 320 --REEKG 324 >gi|16759841|ref|NP_455458.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142386|ref|NP_805728.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|167550356|ref|ZP_02344113.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168230866|ref|ZP_02655924.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168236882|ref|ZP_02661940.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168240823|ref|ZP_02665755.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168263542|ref|ZP_02685515.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168822927|ref|ZP_02834927.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194446466|ref|YP_002040168.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448873|ref|YP_002044962.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194468500|ref|ZP_03074484.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194735970|ref|YP_002114021.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197248756|ref|YP_002145888.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263733|ref|ZP_03163807.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|200389762|ref|ZP_03216373.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204930015|ref|ZP_03221036.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|213161616|ref|ZP_03347326.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213417319|ref|ZP_03350463.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213424589|ref|ZP_03357372.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213648477|ref|ZP_03378530.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213851463|ref|ZP_03381361.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|238913256|ref|ZP_04657093.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|25285894|pir||AH0612 pyruvate formate-lyase 1 activating enzyme [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502134|emb|CAD05370.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica subsp. enterica serovar Typhi] gi|29138016|gb|AAO69577.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|194405129|gb|ACF65351.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407177|gb|ACF67396.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194454864|gb|EDX43703.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711472|gb|ACF90693.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197212459|gb|ACH49856.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197241988|gb|EDY24608.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197290138|gb|EDY29495.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199602207|gb|EDZ00753.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321009|gb|EDZ06210.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205324549|gb|EDZ12388.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205334729|gb|EDZ21493.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205339962|gb|EDZ26726.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205340734|gb|EDZ27498.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205347768|gb|EDZ34399.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|322616401|gb|EFY13310.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619651|gb|EFY16526.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622653|gb|EFY19498.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629802|gb|EFY26577.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632476|gb|EFY29222.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637029|gb|EFY33732.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641610|gb|EFY38247.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646103|gb|EFY42619.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649595|gb|EFY46026.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654103|gb|EFY50426.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658635|gb|EFY54897.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663492|gb|EFY59694.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670228|gb|EFY66368.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671464|gb|EFY67586.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676820|gb|EFY72887.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682745|gb|EFY78764.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686424|gb|EFY82406.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195947|gb|EFZ81114.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199765|gb|EFZ84854.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202758|gb|EFZ87794.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209029|gb|EFZ93966.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211505|gb|EFZ96344.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218010|gb|EGA02725.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219918|gb|EGA04394.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226858|gb|EGA11041.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229812|gb|EGA13935.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233037|gb|EGA17133.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240772|gb|EGA24814.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243088|gb|EGA27109.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249749|gb|EGA33651.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252778|gb|EGA36616.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255845|gb|EGA39592.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260015|gb|EGA43643.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267984|gb|EGA51463.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269831|gb|EGA53280.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 265 Score = 50.7 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 36/249 (14%), Positives = 84/249 (33%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T E+++ +V+ R + G G Sbjct: 48 GCLMRCLYCHNRDTWDTHGGKE--ITVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAE 105 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 + + ++ G+ L T+GFV P I + + Sbjct: 106 FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLD 141 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L +++++ LV ++ LE Y N ++ YV++ G + Sbjct: 142 VTD-LVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAQYLSKKN-VKVWIRYVVVPGWS 194 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 D A L + + + KI L+P++ ++ ++ + Sbjct: 195 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 254 Query: 340 CIKRSGYSS 348 +++ G+ Sbjct: 255 ILEQYGHKV 263 >gi|229825163|ref|ZP_04451232.1| hypothetical protein GCWU000182_00514 [Abiotrophia defectiva ATCC 49176] gi|229790535|gb|EEP26649.1| hypothetical protein GCWU000182_00514 [Abiotrophia defectiva ATCC 49176] Length = 479 Score = 50.7 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 44/217 (20%), Positives = 80/217 (36%), Gaps = 24/217 (11%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC++ C+L C +C+ G + + R ++ G + ++ S Sbjct: 109 ALCLNIAHDCNLACRYCFAGEGEYQGD-------------RGMMSYEVGKAAFDFLIKNS 155 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARV- 231 RK + G GEPL N++ VK ++ + + R TL+T+G + I Sbjct: 156 GHRKNLEVDFFG-GEPLMNWNTVKMLVAYGRELEKIHDKNFRFTLTTNGMLLNDEIIDFC 214 Query: 232 -GEEIGVMLAISLH-AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 E V+L+I V + +R Y + +I + + + + Sbjct: 215 NKEMTNVVLSIDGRKCVHDYMRPTRGGNKSSYDI--IIPKLKDFAAKRDKKEYYVRGTYT 272 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 D D L+L +G +I+L P P Y Sbjct: 273 SKNLDFAADVLHLAD--EGF-TEISLEPVVSLPSEPY 306 >gi|161353606|ref|NP_459945.2| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|162139598|ref|YP_215911.2| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|168466557|ref|ZP_02700419.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|198246171|ref|YP_002214893.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|224582779|ref|YP_002636577.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|195630908|gb|EDX49494.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197940687|gb|ACH78020.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|224467306|gb|ACN45136.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|267992705|gb|ACY87590.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|312911957|dbj|BAJ35931.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223293|gb|EFX48362.1| Pyruvate formate-lyase activating enzyme [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322713963|gb|EFZ05534.1| Pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|326622646|gb|EGE28991.1| Pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 265 Score = 50.7 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 36/249 (14%), Positives = 84/249 (33%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T E+++ +V+ R + G G Sbjct: 48 GCLMRCLYCHNRDTWDTHGGKE--ITVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAE 105 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 + + ++ G+ L T+GFV P I + + Sbjct: 106 FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLD 141 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L +++++ LV ++ LE Y N ++ YV++ G + Sbjct: 142 VTD-LVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAQYLSKKN-VKVWIRYVVVPGWS 194 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 D A L + + + KI L+P++ ++ ++ + Sbjct: 195 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 254 Query: 340 CIKRSGYSS 348 +++ G+ Sbjct: 255 ILEQYGHKV 263 >gi|260597299|ref|YP_003209870.1| pyruvate formate lyase-activating enzyme 1 [Cronobacter turicensis z3032] gi|260216476|emb|CBA29623.1| Pyruvate formate-lyase 1-activating enzyme [Cronobacter turicensis z3032] Length = 246 Score = 50.7 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 34/249 (13%), Positives = 83/249 (33%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T EE++ +V+ R + G G Sbjct: 29 GCLMRCLYCHNRDTWDTHGGKE--ITVEELMKEVVTYRHFMNASGGGVTASGGEAILQAE 86 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 + + ++ G+ L T+GFV P I + E Sbjct: 87 FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLE 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L +++++ LV ++ ++ ++ + YV++ G + Sbjct: 123 VTD-LVMLDLKQMNDEIHQNLVGVSNH----RTLEFAKYISAK--GIKTWIRYVVVPGWS 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 D A L + + + KI L+P++ ++ ++ + Sbjct: 176 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 235 Query: 340 CIKRSGYSS 348 +++ G+ Sbjct: 236 ILEQYGHKV 244 >gi|188534276|ref|YP_001908073.1| Pyruvate formate lyase activating enzyme 1 [Erwinia tasmaniensis Et1/99] gi|188029318|emb|CAO97195.1| Pyruvate formate lyase activating enzyme 1 [Erwinia tasmaniensis Et1/99] Length = 254 Score = 50.7 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 37/249 (14%), Positives = 80/249 (32%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + ++ E++ VL R + G G Sbjct: 37 GCLMRCLYCHNRDTWDTHGGKE--VSVAELMDDVLSYRHYINASGGGVTASGGEAILQAE 94 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN----IARVGE 233 + + ++ + G+ L T+GFV I + + Sbjct: 95 FVRD---------------WFRACR----AKGI-----HTCLDTNGFVRRYDAVIDELLD 130 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L V+++ LV ++ + L+ Y N R YV++ G + Sbjct: 131 VTD-LVMLDLKQVNDERHQTLVGVSNRRTLD-----FARYLTRRN-IRTWIRYVVVPGYS 183 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 D A L + + + KI L+P++ ++ + + Sbjct: 184 DDDASAHQLGEFTRDMTNVEKIELLPYHELGKHKWLAMGEAYGLEGVRPPKAETLERVKH 243 Query: 340 CIKRSGYSS 348 ++ G+S Sbjct: 244 ILESYGHSV 252 >gi|225574938|ref|ZP_03783548.1| hypothetical protein RUMHYD_03017 [Blautia hydrogenotrophica DSM 10507] gi|225037785|gb|EEG48031.1| hypothetical protein RUMHYD_03017 [Blautia hydrogenotrophica DSM 10507] Length = 374 Score = 50.7 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 42/254 (16%), Positives = 80/254 (31%), Gaps = 55/254 (21%) Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 C+ C++ R + EI+ ++L D G G Sbjct: 157 FDCANACAYEAARISGKYR--SVGEIM-RILRRDREYWDEKGGPGFSG------------ 201 Query: 182 IVMMGMGEPLCN----FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 GEP+ ++ + K G++ S I + S ++ E I Sbjct: 202 ------GEPMVQKEFLYEVLLK-----CKEEGMNTS---IETTASVDTETFLKIMELIDF 247 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 H S R N E ++ S R+ +++G ND+ Sbjct: 248 AFIDVKHMDSQKHREKTGIGN-----ERILSNIEALVRNSWKGRLVLRMPVIEGYNDTLE 302 Query: 298 DALNLIKILKGI-PAKINLIPFNP------------WPGCEYLCSDQKDIVTFSECIKRS 344 +A I +K + +INL+PF+ +P EY ++ + + + Sbjct: 303 NAEATIAFMKRLGLFEINLLPFHRLGTSKWEQLGMEYPYAEYSPTEDEVMERLQDFYLDH 362 Query: 345 GYSSPIRTPRGLDI 358 + + G D+ Sbjct: 363 RIACYV----GDDV 372 >gi|320085207|emb|CBY94993.1| pyruvate formate lyase activating enzyme 1 [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 292 Score = 50.7 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 36/249 (14%), Positives = 84/249 (33%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T E+++ +V+ R + G G Sbjct: 75 GCLMRCLYCHNRDTWDTHGGKE--ITVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAE 132 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 + + ++ G+ L T+GFV P I + + Sbjct: 133 FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLD 168 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L +++++ LV ++ LE Y N ++ YV++ G + Sbjct: 169 VTD-LVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAQYLSKKN-VKVWIRYVVVPGWS 221 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 D A L + + + KI L+P++ ++ ++ + Sbjct: 222 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 281 Query: 340 CIKRSGYSS 348 +++ G+ Sbjct: 282 ILEQYGHKV 290 >gi|170727228|ref|YP_001761254.1| pyruvate formate lyase-activating enzyme 1 [Shewanella woodyi ATCC 51908] gi|169812575|gb|ACA87159.1| pyruvate formate-lyase activating enzyme [Shewanella woodyi ATCC 51908] Length = 246 Score = 50.7 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 39/247 (15%), Positives = 83/247 (33%), Gaps = 52/247 (21%) Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC + C +C+ T +++ EE++ Q++ R P E G V S G I Sbjct: 29 GCLMRCQYCHNRDTWDLHGGKDIEVEELMSQIISYR------PFLESSGGGVTASGGEAI 82 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGEEI 235 + + ++ G+ L T+GFV P I + + Sbjct: 83 LQAEFVS---------ALFEACK----KEGI-----HTCLDTNGFVRKYTPIIDELLDNT 124 Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 ++L + + + + L ++ + H ++ YV++ G D Sbjct: 125 DLVL-LDIKHIDDQRHIDLTKVSNH----RTLQFAEHL--HKRQQKTWIRYVVVGGYTDD 177 Query: 296 PRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECI 341 A L LK + K+ L+P++ ++ + + + Sbjct: 178 IDSAKKLADFLKPMTNVEKVELLPYHELGKHKWEAMGEEYELNDISPPSGETMEQIKKVF 237 Query: 342 KRSGYSS 348 +G ++ Sbjct: 238 VDAGLNA 244 >gi|205358099|ref|ZP_02575805.2| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|62127127|gb|AAX64830.1| pyruvate formate lyase activating enzyme 1 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|205327467|gb|EDZ14231.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|323129235|gb|ADX16665.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326627221|gb|EGE33564.1| pyruvate formate-lyase 1-activating enzyme [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 292 Score = 50.7 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 36/249 (14%), Positives = 84/249 (33%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T E+++ +V+ R + G G Sbjct: 75 GCLMRCLYCHNRDTWDTHGGKE--ITVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAE 132 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 + + ++ G+ L T+GFV P I + + Sbjct: 133 FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLD 168 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L +++++ LV ++ LE Y N ++ YV++ G + Sbjct: 169 VTD-LVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAQYLSKKN-VKVWIRYVVVPGWS 221 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 D A L + + + KI L+P++ ++ ++ + Sbjct: 222 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 281 Query: 340 CIKRSGYSS 348 +++ G+ Sbjct: 282 ILEQYGHKV 290 >gi|205352177|ref|YP_002225978.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856361|ref|YP_002243012.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|16419481|gb|AAL19904.1| pyruvate formate lyase activating enzyme 1 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205271958|emb|CAR36802.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206708164|emb|CAR32457.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261246186|emb|CBG23990.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|301157513|emb|CBW17003.1| pyruvate formate-lyase 1 activating enzyme [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|332987861|gb|AEF06844.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 274 Score = 50.7 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 36/249 (14%), Positives = 84/249 (33%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T E+++ +V+ R + G G Sbjct: 57 GCLMRCLYCHNRDTWDTHGGKE--ITVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAE 114 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 + + ++ G+ L T+GFV P I + + Sbjct: 115 FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLD 150 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L +++++ LV ++ LE Y N ++ YV++ G + Sbjct: 151 VTD-LVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAQYLSKKN-VKVWIRYVVVPGWS 203 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 D A L + + + KI L+P++ ++ ++ + Sbjct: 204 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 263 Query: 340 CIKRSGYSS 348 +++ G+ Sbjct: 264 ILEQYGHKV 272 >gi|149909997|ref|ZP_01898646.1| putative pyruvate formate-lyase 1 activating enzyme [Moritella sp. PE36] gi|149807011|gb|EDM66970.1| putative pyruvate formate-lyase 1 activating enzyme [Moritella sp. PE36] Length = 258 Score = 50.3 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 39/243 (16%), Positives = 76/243 (31%), Gaps = 44/243 (18%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C +C+ R+ S E + + Sbjct: 41 GCLMRCLYCH------NRDS---------WDLHSGKDTTVDELIRELISYKAFMLATGGG 85 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM--L 239 V GE + + V+ + A L T+G++ V +E + V + Sbjct: 86 VTASGGEAMLQPEFVRDFFTAAQAE------GVNTCLDTNGYIRKYTDVIDEVLDVTDLV 139 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 + L V++D+ L ++ K LE Y N + YV++ G D A Sbjct: 140 MLDLKQVNDDIHQELAGVSNKRTLE-----FAEYLEKRNQ-KTWIRYVVVPGYTDDDASA 193 Query: 300 LNLIKILKGIPA--KINLIPFNP-------WPGCEY-----LCSDQKDIVTFSECIKRSG 345 L K ++ + K+ L+P++ G +Y + + + Sbjct: 194 HQLGKFIQHMSNIEKVELLPYHELGLHKWKTMGYDYPLDGVPPPSKDTMDRIQNILLEYK 253 Query: 346 YSS 348 + Sbjct: 254 DNV 256 >gi|258544998|ref|ZP_05705232.1| pyruvate formate-lyase 1-activating enzyme [Cardiobacterium hominis ATCC 15826] gi|258519801|gb|EEV88660.1| pyruvate formate-lyase 1-activating enzyme [Cardiobacterium hominis ATCC 15826] Length = 247 Score = 50.3 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 49/270 (18%), Positives = 89/270 (32%), Gaps = 59/270 (21%) Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQ--KLVRNLTAEEILLQVLLAR 155 IET + V +Q GC + C +C+ T R +T +E++ QV+ R Sbjct: 7 HSIETCGTVDGPGLRFVVFTQ-GCLMRCLYCHNRDTWDMETDKSRKITVDELMQQVIQYR 65 Query: 156 SLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS-IASDSMGLSFSK 214 L G V GE L + + Sbjct: 66 FYLKATGGG------------------VTASGGESLLQPE----FIRDWFVACKAYGI-- 101 Query: 215 RRITLSTSGFVPNIARVGEEIGVM---LAISLHAVSNDLRNIL--VPINRKYPLEMLIDA 269 L T+G+ + + EE+ + + L + N++ L VP NR Sbjct: 102 -HTCLDTNGYARHYDKTLEELLDHTDLVMLDLKQLDNEIHKKLVGVPNNRTLMFAE---- 156 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY- 326 H + RI YV++ G +D A L + + + K+ L+P++ ++ Sbjct: 157 --HLQKRNQLTRI--RYVIVPGYSDDDHSAHLLGQYIAPMDNIEKVELLPYHELGAHKWA 212 Query: 327 -----------LCSDQKDIVTFSECIKRSG 345 ++ + ++ IK G Sbjct: 213 LCGDTYQLEGVHPPPKETVEHIADIIKSYG 242 >gi|218887708|ref|YP_002437029.1| nitrogenase cofactor biosynthesis protein NifB [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758662|gb|ACL09561.1| nitrogenase cofactor biosynthesis protein NifB [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 427 Score = 50.3 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 61/164 (37%), Gaps = 25/164 (15%) Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASD---SMGLSFSKRRITLSTSGFVPNIARVGEE 234 +I+ I + G G+P+ N ++L + + + S + G P++ R+ E Sbjct: 77 RITVIGIAGPGDPMANPAETLETLRLVHERHPELLFCLSSNGL-----GLPPHLDRLKEL 131 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYP------------LEMLIDACRHYPGLSNARRI 282 + ++++AV + L R L +++ R + Sbjct: 132 GVTHVTVTINAVDPAIGEKLYSWVRDDKVVWRGREAAELLLARQLESVRGLVER--GMVV 189 Query: 283 TFEYVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCE 325 +++ G+ND + +++ + A I N+IP P Sbjct: 190 KVNTILVPGVNDR--HVEEVARVVGELGATIQNIIPLKPTADTP 231 >gi|261821276|ref|YP_003259382.1| pyruvate formate lyase-activating enzyme 1 [Pectobacterium wasabiae WPP163] gi|261605289|gb|ACX87775.1| pyruvate formate-lyase activating enzyme [Pectobacterium wasabiae WPP163] Length = 246 Score = 50.3 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 36/245 (14%), Positives = 77/245 (31%), Gaps = 48/245 (19%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T EE++ +V+ R + G G Sbjct: 29 GCLMRCLYCHNRDTWDTHGGKE--VTVEELMKEVVTYRHFMNASGGGVTASGGEAILQAE 86 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 + + E ++ D+ G + P I + + Sbjct: 87 FVRDWFRACKAEG----------INTCLDTNGF----------VRRYDPVIDELLDVSD- 125 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 ++ + L +++D+ LV ++ L+ Y N R YV++ G +D Sbjct: 126 LVMLDLKQMNDDIHQNLVGVSNHRTLD-----FARYLAKRNQ-RTWIRYVVVPGWSDDDA 179 Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKR 343 A L + K + KI L+P++ ++ + ++ Sbjct: 180 SAHKLGEFTKDMTNIEKIELLPYHELGKHKWIAMGEEYKLDGVKPPKADTMDRVKSILES 239 Query: 344 SGYSS 348 G+ Sbjct: 240 YGHKV 244 >gi|15222863|ref|NP_175427.1| pathogenesis-related protein, putative [Arabidopsis thaliana] gi|332194391|gb|AEE32512.1| putative pathogenesis-related protein [Arabidopsis thaliana] Length = 226 Score = 50.3 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 24/42 (57%) Query: 341 IKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQI 382 +K ++ +R RGL AACGQL++ ++ P + E ++ Sbjct: 156 LKSRKITASVRQTRGLGASAACGQLRNKFQKSPSLATAEGEV 197 >gi|332702062|ref|ZP_08422150.1| nitrogenase cofactor biosynthesis protein NifB [Desulfovibrio africanus str. Walvis Bay] gi|332552211|gb|EGJ49255.1| nitrogenase cofactor biosynthesis protein NifB [Desulfovibrio africanus str. Walvis Bay] Length = 445 Score = 50.3 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 28/200 (14%), Positives = 68/200 (34%), Gaps = 28/200 (14%) Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITL 219 P + +I+ + + G G+P N + +++ + L + Sbjct: 60 PPQAAAYLDRVLEKEPRITVVGIAGPGDPFANAEATLETIRLIRERHPEML------FCV 113 Query: 220 STS--GFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYP------------LEM 265 ST+ G P + RV + + ++++AV + R L Sbjct: 114 STNGLGLPPYLDRVKDAGITHMTVTVNAVDPAVGKRFYSWVRDGERTLHGREAAELLLMR 173 Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGC 324 +++ R + ++ G ND L K + + +N++P +P Sbjct: 174 QLESIRGLKER--GITVKVNTILTPGYNDG--HIEELAKAMASMGVDMLNVMPLHPTADT 229 Query: 325 EYLCSDQKDIVTFSECIKRS 344 + + + F E ++++ Sbjct: 230 PFEGIIEPN-KAFVEKLRKA 248 >gi|255523841|ref|ZP_05390805.1| glycyl-radical enzyme activating protein family [Clostridium carboxidivorans P7] gi|255512403|gb|EET88679.1| glycyl-radical enzyme activating protein family [Clostridium carboxidivorans P7] Length = 300 Score = 50.3 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 52/275 (18%), Positives = 94/275 (34%), Gaps = 55/275 (20%) Query: 107 YIPEKSRGTLCVSSQVGCSLT---------------CSFCYTGTQKLVRNLTAEEILLQV 151 + + R T C C C+ C T N TA E + + Sbjct: 48 IMFFEERCTGCGICAKRCPQNAISIKEGHSVVDEEKCALCGKCTD-FCPN-TAREYVGKD 105 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 + L+ + E + G GEPL + D + + L G+ Sbjct: 106 VTVSELMKEIMKDEVFYDESGGG-------VTFSG-GEPLIHIDFLNEVLKK-CKEKGI- 155 Query: 212 FSKRRITLSTSGFVP--NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 T+ TSG VP ++ ++ +++ + L + + N+ + KY + Sbjct: 156 ----HTTVDTSGCVPWESLEKILDKVDLFL-YDIKFMDNEK-------HIKYIGSENTNI 203 Query: 270 CRHYPGLSNAR-RITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEYL 327 + LS+ RI ++ G+ND + I+ L I A ++NL+P++ +Y Sbjct: 204 LENLKKLSDKGCRIFVRMPIVAGVNDDAYHIDSAIEFLSHINAEQVNLLPYHKMGMDKYR 263 Query: 328 C------------SDQKDIVTFSECIKRSGYSSPI 350 K + S K+SG I Sbjct: 264 RLKMTYKLSGNEKPSDKVMEEISNKFKKSGIKIKI 298 >gi|227111995|ref|ZP_03825651.1| pyruvate formate lyase-activating enzyme 1 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 246 Score = 50.3 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 36/245 (14%), Positives = 77/245 (31%), Gaps = 48/245 (19%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T EE++ +V+ R + G G Sbjct: 29 GCLMRCLYCHNRDTWDTHGGKE--VTVEELMKEVVTYRHFMNASGGGVTASGGEAILQAE 86 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 + + E ++ D+ G + P I + + Sbjct: 87 FVRDWFRACKAEG----------INTCLDTNGF----------VRRYDPVIDELLDVSD- 125 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 ++ + L +++D+ LV ++ L+ Y N R YV++ G +D Sbjct: 126 LVMLDLKQMNDDIHQNLVGVSNHRTLD-----FARYLAKRNQ-RTWIRYVVVPGWSDDDA 179 Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKR 343 A L + K + KI L+P++ ++ + ++ Sbjct: 180 SAHKLGEFTKDMTNIEKIELLPYHELGKHKWIAMGEEYKLDGVKPPKADTMDRVKSILES 239 Query: 344 SGYSS 348 G+ Sbjct: 240 YGHKV 244 >gi|188586401|ref|YP_001917946.1| Radical SAM domain protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351088|gb|ACB85358.1| Radical SAM domain protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 489 Score = 50.3 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 82/230 (35%), Gaps = 34/230 (14%) Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167 I + LCV C++ CS+C+ +++ +I + + Sbjct: 110 IGKSGIKALCVHPAHDCNMRCSYCFAEGGSYSHDISYMDI-------------DTAKQAV 156 Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL---SIASDSMGLSFSKRRITLSTSGF 224 E +V S RK I G GEPL NF ++K + ++ G F + TL+T+G Sbjct: 157 EFLVNNSGDRKNLEIDFFG-GEPLLNFPVIEKCVAHAKELANKHGKHF---KFTLTTNGL 212 Query: 225 V--PNIARVGEEIGVMLAISL---HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279 +I + +SL + ++ R L N Y E ++ A + A Sbjct: 213 ALTDSIIDFLVSNRFAVVMSLDGRKEIHDNYRTDL-AGNSTY--EKILPAFKKLLNKMQA 269 Query: 280 R---RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 + D D ++ + G ++I+L P + Sbjct: 270 HDYCEYYIRGTYTRKNLDFSEDVFHIADL--GF-SRISLEPVTGEENSSF 316 >gi|299142548|ref|ZP_07035679.1| pyruvate formate-lyase 1-activating enzyme [Prevotella oris C735] gi|298575983|gb|EFI47858.1| pyruvate formate-lyase 1-activating enzyme [Prevotella oris C735] Length = 242 Score = 50.3 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 42/213 (19%), Positives = 80/213 (37%), Gaps = 35/213 (16%) Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC + C FC+ T Q R +TA+E+L Q RS G+ G Sbjct: 26 GCPMRCLFCHNPDTWKQDKTRPMTADELLNQAEKYRSYWGEKGG---------------- 69 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASD---SMGLSFSKRRITLSTSGFVPNIARVGEEIG 236 I + G GE L D + + A + L S + T + R+ + Sbjct: 70 --ITVSG-GEALLQIDFLIELFEKAHARSINTCLDTSAQPFT-RKGTWFAKFERLMKVTD 125 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 +L H ++ R + K+ ++D R+ + + + +V++ + D+ Sbjct: 126 TVLLDIKHIREDEHRKL-----TKFSNSNILDCARYLSDI--QKPVWIRHVLIPKLTDND 178 Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327 L LK + +I+++P++ +Y Sbjct: 179 AYLHELAAFLKTLHNIERIDILPYHTLGTYKYE 211 >gi|302389502|ref|YP_003825323.1| Radical SAM domain protein [Thermosediminibacter oceani DSM 16646] gi|302200130|gb|ADL07700.1| Radical SAM domain protein [Thermosediminibacter oceani DSM 16646] Length = 463 Score = 50.3 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 66/209 (31%), Gaps = 30/209 (14%) Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166 +K+ LC++ C+L C +C+ E R L+ Sbjct: 88 LRQKKNVKALCLNVAHDCNLRCKYCFASKG-----HYNGE--------RRLMDKKVAQSA 134 Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDN---VKKSLSIASDSMGLSFSKRRITLST-- 221 ++ ++ S K + G GEPL FD V D G F T++T Sbjct: 135 VDFLIEHSGNLKNLEVDFFG-GEPLMAFDTIKYVISYARSLEDRCGKRF---HFTVTTNC 190 Query: 222 SGFVPNIARVGEEIGVMLAISL---HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN 278 + I E + +SL V++ +R V + + +++ + L Sbjct: 191 TILNDEIIDYLHENMDNIVMSLDGRKRVNDAIR---VKADGSGSYDQVVENIKRIVKLRK 247 Query: 279 AR--RITFEYVMLKGINDSPRDALNLIKI 305 + D D +L + Sbjct: 248 RDGKDYYVRGTFTRHNLDFAEDVFHLADL 276 >gi|134301127|ref|YP_001114623.1| radical SAM domain-containing protein [Desulfotomaculum reducens MI-1] gi|134053827|gb|ABO51798.1| Radical SAM domain protein [Desulfotomaculum reducens MI-1] Length = 450 Score = 49.9 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 52/294 (17%), Positives = 99/294 (33%), Gaps = 42/294 (14%) Query: 50 FQGMSDISQE-VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYI 108 + +E ++ +S E E+I +L G Y Sbjct: 32 LEEYQKHPKEEIQQRFADKYSPDEIEQALEEIKSLVDEGFLFTTDPHQEG--------YR 83 Query: 109 PEKSR--GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166 P++ LC+ + C+L C +C+ G K LL G Sbjct: 84 PKRDGVVKALCLHAAHDCNLRCKYCFAGEGKFGG-------------PSGLLSAETGRAA 130 Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR-----RITLST 221 I+ ++ S RK I G GEPL NF +K+ + G +K + TL+T Sbjct: 131 IDFLIQHSGNRKHVEIDFFG-GEPLLNFKVIKELV-----PYGRERAKEAGKEIKYTLTT 184 Query: 222 SGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVP-INRKYPLEMLIDACRHYPGLSN 278 +G + + + + + +SL ++ + + P + ++ A + Y Sbjct: 185 NGVLLNKEVQQFLIDNQMAAVLSLDG-RPEVHDQMRPAPGGRGSYTRVVSAFQEYVQQEP 243 Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332 + D RD L++ + +G I++ P +Y + Sbjct: 244 PAGYVIRGTFTRHNLDFSRDVLHMAE--QGFK-DISVEPVVAGSDTDYAFKPED 294 >gi|219870425|ref|YP_002474800.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus parasuis SH0165] gi|219690629|gb|ACL31852.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus parasuis SH0165] Length = 246 Score = 49.9 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 40/244 (16%), Positives = 86/244 (35%), Gaps = 46/244 (18%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C +C+ R+ E + R Sbjct: 29 GCLMRCKYCH------NRDT---------WDLEGGKEISVEDLMKEVVTYKHFMRATGGG 73 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM--L 239 V GE + + V+ A + G+ L T+GFV N + + +E + V + Sbjct: 74 VTASGGEAVLQMEFVRDWFR-ACKAEGID-----TCLDTNGFVRNYSELVDEMLDVTDLV 127 Query: 240 AISLHAVSNDL-RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 + L ++ ++ ++ + N++ +D R Y N R YV++ G D+ D Sbjct: 128 MLDLKQLNEEIHKDFIGVSNKR-----TLDFAR-YLHKRNQ-RTWIRYVVVPGYTDADED 180 Query: 299 ALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIKRS 344 L + ++G+ K+ L+P++ ++ ++ + I+ Sbjct: 181 IHLLGQFIQGMDNIEKVELLPYHRLGAHKWKTLGLEYELEDVMPPTKESLEHIKGIIESY 240 Query: 345 GYSS 348 G++ Sbjct: 241 GHTV 244 >gi|262404211|ref|ZP_06080766.1| pyruvate formate-lyase activating enzyme [Vibrio sp. RC586] gi|262349243|gb|EEY98381.1| pyruvate formate-lyase activating enzyme [Vibrio sp. RC586] Length = 246 Score = 49.9 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 39/246 (15%), Positives = 82/246 (33%), Gaps = 50/246 (20%) Query: 123 GCSLTCSFCY------TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176 GC C +C+ T T R +T EEI+ + R + G G Sbjct: 29 GCLFRCKYCHNRDTWDTHTG---REVTVEEIIKEAKSYRHFMNASGGGITCSGGEAMLQP 85 Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236 + ++ E + D+ G K F P I V E Sbjct: 86 EFVRDLFRSAKAEG----------IHTCLDTNGY-IRK---------FTPVIDEVLEVTD 125 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 ++ + + + +++ L+ ++ K +D R+ + ++ YV++ G D Sbjct: 126 -LVMLDIKQMDDEIHQDLIGVSNK----RTLDFARYLHQI--GQKTWLRYVVVPGYTDDE 178 Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIK 342 A L + +KG+ KI L+P++ ++ ++ + ++ Sbjct: 179 ASAHQLGEFIKGMENIEKIELLPYHKLGAHKWEAMGEEYPLEGVNPPSKETMDKIVAILE 238 Query: 343 RSGYSS 348 + Sbjct: 239 LYHSNV 244 >gi|299143206|ref|ZP_07036286.1| pyruvate formate-lyase 1-activating enzyme [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517691|gb|EFI41430.1| pyruvate formate-lyase 1-activating enzyme [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 248 Score = 49.9 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 79/229 (34%), Gaps = 46/229 (20%) Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC L C+FC+ T RN+T EEI+ + + + G Sbjct: 26 GCPLRCAFCHNVDTQNPFGGRNITVEEIVERSRKMKPYFRNGKGG--------------- 70 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN--IARVGEEIGV 237 + G GEP + + ++ +T+ TSG + EE + Sbjct: 71 --VTFSG-GEPTLDGKFLLDAIKAVKAE------GIHVTVDTSGVGDQKYYDEIIEEADL 121 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 +L + + + + N PL+ I+A + + +VM+ + DS Sbjct: 122 IL-LDIKHYNAIGFKNITERNIS-PLKKFIEAVER-----HNTPVWIRHVMMPKVTDSKY 174 Query: 298 DALNLIKI---LKGIPAKINLIPFNPWP-------GCEYLCSDQKDIVT 336 L + +K KI ++P++ G EY D + + Sbjct: 175 HMDKLCEFIAPIKDKIEKIEILPYHTMGVHKYEDLGIEYKLKDMEAMDK 223 >gi|167854968|ref|ZP_02477743.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus parasuis 29755] gi|167853925|gb|EDS25164.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus parasuis 29755] Length = 246 Score = 49.9 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 40/244 (16%), Positives = 86/244 (35%), Gaps = 46/244 (18%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C +C+ R+ E + R Sbjct: 29 GCLMRCKYCH------NRDT---------WDLEGGKEISVEDLMKEVVTYKHFMRATGGG 73 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM--L 239 V GE + + V+ A + G+ L T+GFV N + + +E + V + Sbjct: 74 VTASGGEAVLQMEFVRDWFR-ACKAEGID-----TCLDTNGFVRNYSELVDEMLDVTDLV 127 Query: 240 AISLHAVSNDL-RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 + L ++ ++ ++ + N++ +D R Y N R YV++ G D+ D Sbjct: 128 MLDLKQLNEEIHKDFIGVSNKR-----TLDFAR-YLHKRNQ-RTWIRYVVVPGYTDADED 180 Query: 299 ALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIKRS 344 L + ++G+ K+ L+P++ ++ ++ + I+ Sbjct: 181 IHLLGQFIQGMDNIEKVELLPYHRLGAHKWKILGLEYELEDVMPPTKESLEHIKGIIESY 240 Query: 345 GYSS 348 G++ Sbjct: 241 GHTV 244 >gi|295096397|emb|CBK85487.1| pyruvate formate-lyase 1-activating enzyme [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 246 Score = 49.9 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 37/249 (14%), Positives = 86/249 (34%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T E+++ +V+ R + G Sbjct: 29 GCLMRCLYCHNRDTWDTHGGKE--VTVEDLMKEVVTYRHFMNASGGG------------- 73 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 V GE + + V+ A G+ L T+GFV P I + E Sbjct: 74 -----VTASGGEAILQAEFVRDWFR-ACHKEGI-----HTCLDTNGFVRRYDPVIDELLE 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L +++++ LV ++ ++ ++ + YV++ G + Sbjct: 123 VTD-LVMLDLKQMNDEIHQNLVGVSNH----RTLEFAKYIANK--GVKTWIRYVVVPGWS 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 D A L + + + KI L+P++ ++ ++ + Sbjct: 176 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 235 Query: 340 CIKRSGYSS 348 +++ G+ Sbjct: 236 ILEQYGHKV 244 >gi|212703419|ref|ZP_03311547.1| hypothetical protein DESPIG_01463 [Desulfovibrio piger ATCC 29098] gi|212673164|gb|EEB33647.1| hypothetical protein DESPIG_01463 [Desulfovibrio piger ATCC 29098] Length = 488 Score = 49.9 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 28/188 (14%), Positives = 65/188 (34%), Gaps = 21/188 (11%) Query: 124 CSLTCSFCYTGTQKLVR-NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 C+ C C + K N+T + L P E++ ++ GR+ Sbjct: 217 CNARCVGCISEQDKDSPINVTP----------QCRLTFTPTPEELVEVMSFHAGRETKTP 266 Query: 183 VMM----GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238 + G+PL N D + +S+ + G+ S + + R+ + Sbjct: 267 IYSFGQGCEGDPLMNPDLLVESVRLFRSQGGVGTVNCNTNASRT---EAVERLAKAGLSS 323 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 + +SL++ ++ Y + + + N ++ + G+ DS + Sbjct: 324 IRVSLNSARPEV-YERYYRPHGYSFDDVRRSIA--VARQNGLWVSLNLLFFPGVTDSEGE 380 Query: 299 ALNLIKIL 306 L +++ Sbjct: 381 LEALARLV 388 >gi|145299597|ref|YP_001142438.1| pyruvate formate lyase-activating enzyme 1 [Aeromonas salmonicida subsp. salmonicida A449] gi|142852369|gb|ABO90690.1| pyruvate formate-lyase 1 activating enzyme [Aeromonas salmonicida subsp. salmonicida A449] Length = 261 Score = 49.9 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 38/276 (13%), Positives = 85/276 (30%), Gaps = 50/276 (18%) Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC-----YTGTQKLVRNLTAEEI 147 + IG +ET + V Q GC + C +C + R +T E+ Sbjct: 14 ESGVIGRIHSVETCGTVDGPGIRFIVFMQ-GCLMRCKYCHNRDTWDTQGG--REVTVPEL 70 Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207 + + R + G G I+ + E K + D+ Sbjct: 71 MSDITSYRHFMNASGGGVTASGGEAMLQQNFIAEL-FAACKE---------KGVHTCLDT 120 Query: 208 MGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267 G + + +V + ++L + + ++++ L ++ KY LE Sbjct: 121 NGF----------VRHYDEQLDKVLDNTDLVL-LDIKQINDEKHIPLTHVSNKYTLE--- 166 Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK--GIPA-KINLIPFNPWPGC 324 Y + YV++ +D A L + + G K+ L+P++ Sbjct: 167 --FARYLAAKGKT-MWIRYVVVPTWSDDDESAEGLGQFIAELGDSVEKVELLPYHELGKH 223 Query: 325 EY------------LCSDQKDIVTFSECIKRSGYSS 348 ++ ++ + + + + Sbjct: 224 KWDVLGENYDLTGIKPPSKETMDRVQGILAKYHNNV 259 >gi|117619525|ref|YP_856225.1| pyruvate formate lyase-activating enzyme 1 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560932|gb|ABK37880.1| pyruvate formate-lyase activating enzyme [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 272 Score = 49.9 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 38/274 (13%), Positives = 84/274 (30%), Gaps = 50/274 (18%) Query: 95 RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC-----YTGTQKLVRNLTAEEILL 149 IG +ET + V Q GC + C +C + R +T E++ Sbjct: 27 GVIGRIHSVETCGTVDGPGIRFIVFMQ-GCLMRCKYCHNRDTWDTQGG--REVTVPELMS 83 Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209 + R + G G I+ + E K + D+ G Sbjct: 84 DITSYRHFMNASGGGVTASGGEAMLQQNFIAEL-FAACKE---------KGIHTCLDTNG 133 Query: 210 LSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 + + +V + ++L + + +++D L ++ KY LE Sbjct: 134 F----------VRHYDEQLDKVLDNTDLVL-LDIKQINDDKHIPLTHVSNKYTLE----- 177 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP-A--KINLIPFNPWPGCEY 326 Y + YV++ +D A L + + + K+ L+P++ ++ Sbjct: 178 FARYLAAKGKT-MWIRYVVVPTWSDDDESAEGLGQFIAELGECVEKVELLPYHELGKHKW 236 Query: 327 ------------LCSDQKDIVTFSECIKRSGYSS 348 ++ + + + + Sbjct: 237 DVLGDTYDLNGIKPPSKETMDRVQGILAKYHNNV 270 >gi|240137021|ref|YP_002961490.1| Radical SAM domain protein [Methylobacterium extorquens AM1] gi|240006987|gb|ACS38213.1| Radical SAM domain protein [Methylobacterium extorquens AM1] Length = 373 Score = 49.9 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 58/146 (39%), Gaps = 12/146 (8%) Query: 225 VPNIARVGEEIGV----MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280 P+ R E + L + L AV+ ++R ++P PLE +A + Sbjct: 215 PPDDDRWFERMKASGIDALGMHLEAVTPEVRTRIMPGKASVPLERYYEAFEAAVPVFGRG 274 Query: 281 RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTF 337 +++ Y++ G+ D+P L + + L G+ ++PF P G + Sbjct: 275 QVS-TYIL-AGLGDAPEAILEMAERLVGMGVYPFVVPFVPISGTPLESHPAPGPDFMHAI 332 Query: 338 SECIKRSGYSSPIRTPRGLDILAACG 363 + + + +R+ DI A CG Sbjct: 333 LKPLADMLAGADLRST---DIKAGCG 355 >gi|157154815|ref|YP_001462103.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli E24377A] gi|301022943|ref|ZP_07186758.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 69-1] gi|157076845|gb|ABV16553.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli E24377A] gi|294493276|gb|ADE92032.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli IHE3034] gi|300397284|gb|EFJ80822.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 69-1] gi|315296163|gb|EFU55471.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 16-3] gi|324113806|gb|EGC07781.1| pyruvate formate-lyase 1-activating enzyme [Escherichia fergusonii B253] gi|324116115|gb|EGC10039.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli E1167] Length = 265 Score = 49.9 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 37/249 (14%), Positives = 84/249 (33%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T E+++ +V+ R + G G Sbjct: 48 GCLMRCLYCHNRDTWDTHGGKE--VTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAE 105 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 + + ++ G+ L T+GFV P I + E Sbjct: 106 FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLE 141 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L +++++ LV ++ LE Y N ++ YV++ G + Sbjct: 142 VTD-LVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAKYLANKN-VKVWIRYVVVPGWS 194 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 D A L + + + KI L+P++ ++ ++ + Sbjct: 195 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 254 Query: 340 CIKRSGYSS 348 +++ G+ Sbjct: 255 ILEQYGHKV 263 >gi|259046654|ref|ZP_05737055.1| pyruvate formate-lyase 1-activating enzyme [Granulicatella adiacens ATCC 49175] gi|259036819|gb|EEW38074.1| pyruvate formate-lyase 1-activating enzyme [Granulicatella adiacens ATCC 49175] Length = 254 Score = 49.9 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 37/244 (15%), Positives = 76/244 (31%), Gaps = 55/244 (22%) Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC + C FC+ T +T++E+L Q L R+ G G Sbjct: 32 GCRMRCEFCHNPDTWNIGGGHPITSQELLDQALQYRAFWGRKGG---------------- 75 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEE 234 V + GEPL D + + TL + G P ++ E Sbjct: 76 ---VTVSGGEPLLQIDFLIDFFKRCKK------AGVHTTLDSCGMPFTYDEPFFSKFEEL 126 Query: 235 IGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 + + + + + ++ L K L+ Y + + +V++ Sbjct: 127 LEYTDLILLDIKHIDDEQHKKLTGWTNKNILQ-----LAEYLS-DKGQPVWIRHVLVPER 180 Query: 293 NDSPRDALNLIKILKGIP--AKINLIPFN-------PWPGCEYL-----CSDQKDIVTFS 338 +D + L + + + K ++P++ G Y Q+ + Sbjct: 181 SDYDEYLIRLSEFVSKLKNVLKFEILPYHKLGVYKWKNLGIPYKLDHIEPPTQERVDNAR 240 Query: 339 ECIK 342 ++ Sbjct: 241 RILR 244 >gi|242239673|ref|YP_002987854.1| pyruvate formate lyase-activating enzyme 1 [Dickeya dadantii Ech703] gi|242131730|gb|ACS86032.1| pyruvate formate-lyase activating enzyme [Dickeya dadantii Ech703] Length = 246 Score = 49.9 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 44/217 (20%), Positives = 80/217 (36%), Gaps = 44/217 (20%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + R +T EE++ +V+ R + G Sbjct: 29 GCLMRCLYCHNRDTWDTHGG--REITVEELMKEVVTYRHFMNASGGG------------- 73 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 V GE + + V+ A G++ L T+GFV P I + + Sbjct: 74 -----VTASGGEAILQAEFVRDWFR-ACHEQGIN-----TCLDTNGFVRRYDPVIDELLD 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L +++D+ LV ++ LE Y N R+ YV++ G Sbjct: 123 VTD-LVMLDLKQLNDDIHQNLVGVSNHRTLE-----FARYLATRNQ-RVWIRYVVVPGWT 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYLC 328 D A L + K + KI L+P++ ++ Sbjct: 176 DDDASAHLLGEFTKNMSNIEKIELLPYHELGKHKWTA 212 >gi|239628873|ref|ZP_04671904.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519019|gb|EEQ58885.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 255 Score = 49.9 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 41/214 (19%), Positives = 71/214 (33%), Gaps = 37/214 (17%) Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC + C +C+ T K +T EEIL Q AR Sbjct: 29 GCPMRCLYCHNPDTWDPKGGNPMTVEEILAQFEQARPFYKKG------------------ 70 Query: 180 SNIVMMGMGEPLCNFDNV---KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236 I + G GEPL V ++ + L S S+ G + R+ Sbjct: 71 -GITVSG-GEPLMQIRFVTELFEAARARNIHTCLDTSGITFNPSSEGIMAMFDRLMAVTD 128 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 ++ + + + + L + I A Y + +V + GI D+ Sbjct: 129 -LVMLDIKHIDPEEHIKLCAQ-----PQDNILAFARYLEQK-KIPVWIRHVAVPGITDNE 181 Query: 297 RDALNLIKI---LKGIPAKINLIPFNPWPGCEYL 327 L + LK I A ++++P++ +Y Sbjct: 182 TYLYRLGRYLGTLKNIKA-LDVLPYHDMGKAKYH 214 >gi|191167604|ref|ZP_03029415.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B7A] gi|190902365|gb|EDV62103.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B7A] Length = 265 Score = 49.9 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 37/249 (14%), Positives = 84/249 (33%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T E+++ +V+ R + G G Sbjct: 48 GCLMRCLYCHNRDTWDTHGGKE--VTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAE 105 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 + + ++ G+ L T+GFV P I + E Sbjct: 106 FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLE 141 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L +++++ LV ++ LE Y N ++ YV++ G + Sbjct: 142 VTD-LVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAKYLANKN-VKVWIRYVVVPGWS 194 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 D A L + + + KI L+P++ ++ ++ + Sbjct: 195 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 254 Query: 340 CIKRSGYSS 348 +++ G+ Sbjct: 255 ILEQYGHKV 263 >gi|296103095|ref|YP_003613241.1| pyruvate formate lyase-activating enzyme 1 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057554|gb|ADF62292.1| pyruvate formate lyase-activating enzyme 1 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 246 Score = 49.9 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 36/249 (14%), Positives = 86/249 (34%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T E+++ +V+ R + G Sbjct: 29 GCLMRCLYCHNRDTWDTHGGKE--VTVEDLMKEVVTYRHFMNASGGG------------- 73 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 V GE + + V+ A G+ L T+GFV P I + + Sbjct: 74 -----VTASGGEAILQAEFVRDWFR-ACHKEGI-----HTCLDTNGFVRRYDPVIDELLD 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L +++++ LV ++ ++ ++ + YV++ G + Sbjct: 123 VTD-LVMLDLKQMNDEIHQNLVGVSNH----RTLEFAKYISAK--GIKTWIRYVVVPGWS 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 D A L + + + KI L+P++ ++ ++ + Sbjct: 176 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 235 Query: 340 CIKRSGYSS 348 +++ G+ Sbjct: 236 ILEQYGHKV 244 >gi|218546598|gb|ACK98945.1| predicted Fe-S-cluster redox enzyme [Aeromonas salmonicida subsp. achromogenes] gi|218546620|gb|ACK98959.1| predicted Fe-S-cluster redox enzyme [Aeromonas salmonicida subsp. salmonicida A449] Length = 43 Score = 49.9 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%) Query: 350 IRTPRGLDILAACGQLKSLS-KRIPKVPRQEMQITG 384 +R RG DI AACGQL R + + MQ G Sbjct: 2 VRKTRGDDIDAACGQLVGEVIDRTKRTMKNRMQQDG 37 >gi|153854548|ref|ZP_01995818.1| hypothetical protein DORLON_01813 [Dorea longicatena DSM 13814] gi|149752857|gb|EDM62788.1| hypothetical protein DORLON_01813 [Dorea longicatena DSM 13814] Length = 309 Score = 49.9 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 71/221 (32%), Gaps = 37/221 (16%) Query: 146 EILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS 205 EI+ Q ++L+ + V ++ M D + + Sbjct: 105 EIVGQKYPVKALVKELMKDLMFYEQSGGGVTLSGGEVMAMST-------DYILEIAKALK 157 Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEEIGV--MLAISLHAVSNDLRNILVPINRKYPL 263 +T+ T G+VP + + + + +L + ++ K L Sbjct: 158 KEE------VSLTIDTCGYVPY-EKFEAILPYVNTFLYDVKVMDPELHKQYIGVDNKLIL 210 Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK---INLIPFNP 320 + L+ RI +K +N + + I+ LK +NL+P++ Sbjct: 211 DNLVKLSDA------GARIYIRIPTVKEVNGNEENMNETIRFLKEHDIHPAQVNLLPYHN 264 Query: 321 WPGCEYLC------------SDQKDIVTFSECIKRSGYSSP 349 +Y ++++ F + + +G+S+ Sbjct: 265 TGSSKYPKLDMEYKGNDLSAPTKEEMEGFVKLFQDAGFSNT 305 >gi|300856539|ref|YP_003781523.1| putative Fe-S oxidoreductase [Clostridium ljungdahlii DSM 13528] gi|300436654|gb|ADK16421.1| putative Fe-S oxidoreductase [Clostridium ljungdahlii DSM 13528] Length = 455 Score = 49.5 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 46/250 (18%), Positives = 84/250 (33%), Gaps = 36/250 (14%) Query: 61 RHLLNQHF-SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119 R + + + I + S D I E E +I LC++ Sbjct: 55 REEVVEAYGEIQQLIEKEMLYSKD---------LYEGIAKKHESEPSFIK-----ALCLN 100 Query: 120 SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 C+L C +C+ E + R L+ G + I+ ++ S RK Sbjct: 101 IAHDCNLRCKYCFADE---------GEYKGR----RKLMSAKIGKKAIDFVIEKSGPRKN 147 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV----GEEI 235 + + G GEPL FD VK+ + A L R T++T+ + N + Sbjct: 148 IEVDLFG-GEPLMAFDAVKEIVEYAKKQEKLHNKNIRFTMTTNATLLNDEIMDYLDKNMG 206 Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN-D 294 ++L+I ND + V + + ++ + + + + + N D Sbjct: 207 NIVLSIDGRKEVNDKVRVRVDGTGSF--DSILPKIKKMVKIRDKSKQYYARGTFTRNNID 264 Query: 295 SPRDALNLIK 304 D L Sbjct: 265 FFEDIKYLAD 274 >gi|117623083|ref|YP_851996.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli APEC O1] gi|115512207|gb|ABJ00282.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli APEC O1] Length = 265 Score = 49.5 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 37/249 (14%), Positives = 84/249 (33%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T E+++ +V+ R + G G Sbjct: 48 GCLMRCLYCHNRDTWDTHGGKE--VTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAE 105 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 + + ++ G+ L T+GFV P I + E Sbjct: 106 FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLE 141 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L +++++ LV ++ LE Y N ++ YV++ G + Sbjct: 142 VTD-LVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAKYLANKN-VKVWIRYVVVPGWS 194 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 D A L + + + KI L+P++ ++ ++ + Sbjct: 195 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 254 Query: 340 CIKRSGYSS 348 +++ G+ Sbjct: 255 ILEQYGHKV 263 >gi|210060915|pdb|3C8F|A Chain A, 4fe-4s-Pyruvate Formate-Lyase Activating Enzyme With Partially Disordered Adomet gi|210060916|pdb|3CB8|A Chain A, 4fe-4s-Pyruvate Formate-Lyase Activating Enzyme In Complex With Adomet And A Peptide Substrate Length = 245 Score = 49.5 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 37/249 (14%), Positives = 84/249 (33%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T E+++ +V+ R + G G Sbjct: 28 GCLMRCLYCHNRDTWDTHGGKE--VTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAE 85 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 + + ++ G+ L T+GFV P I + E Sbjct: 86 FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLE 121 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L +++++ LV ++ LE Y N ++ YV++ G + Sbjct: 122 VTD-LVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAKYLANKN-VKVWIRYVVVPGWS 174 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 D A L + + + KI L+P++ ++ ++ + Sbjct: 175 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 234 Query: 340 CIKRSGYSS 348 +++ G+ Sbjct: 235 ILEQYGHKV 243 >gi|332093278|gb|EGI98338.1| pyruvate formate-lyase 1-activating enzyme [Shigella boydii 5216-82] Length = 246 Score = 49.5 bits (117), Expect = 9e-04, Method: Composition-based stats. Identities = 37/249 (14%), Positives = 84/249 (33%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T E+++ +V+ R + G G Sbjct: 29 GCLMRCLYCHNRDTWDTHGGKE--VTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAE 86 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 + + ++ G+ L T+GFV P I + E Sbjct: 87 FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLE 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L +++++ LV ++ LE Y N ++ YV++ G + Sbjct: 123 VTD-LVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAKYLANKN-VKVWIRYVVVPGWS 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 D A L + + + KI L+P++ ++ ++ + Sbjct: 176 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLHGVKPPKKETMERVKG 235 Query: 340 CIKRSGYSS 348 +++ G+ Sbjct: 236 ILEQYGHKV 244 >gi|303327677|ref|ZP_07358117.1| radical SAM domain protein [Desulfovibrio sp. 3_1_syn3] gi|302862038|gb|EFL84972.1| radical SAM domain protein [Desulfovibrio sp. 3_1_syn3] Length = 466 Score = 49.5 bits (117), Expect = 9e-04, Method: Composition-based stats. Identities = 34/211 (16%), Positives = 71/211 (33%), Gaps = 24/211 (11%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+ C C + K + + Q LA E +E M + + I Sbjct: 192 CNARCVGCISAQDK----DSPVAVTPQCRLA----FTPEAAEIVEVMRLHQSRETATPIY 243 Query: 184 MMGMG---EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP-NIARVGEEIGVML 239 G G +PL N D + +S+ + G + +T+ P +AR+ E + Sbjct: 244 SFGQGCEGDPLTNADLLVESVRLFRTGGGRG----TVNCNTNASNPEAVARLAEAGLTSM 299 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 +S ++ L Y + + R ++ + G+ D+ + Sbjct: 300 RVSCNSAREALYRRYYRPAD-YSFADVRASIRE--ARQRGIFVSLNLLFFPGVTDTEEEL 356 Query: 300 LNLIKILKGIPAKINLIPF---NPWPGCEYL 327 L +++ +++I + N P + Sbjct: 357 EALARLVGENG--VSMIQWRNLNIDPEWYFR 385 >gi|126178604|ref|YP_001046569.1| radical SAM domain-containing protein [Methanoculleus marisnigri JR1] gi|125861398|gb|ABN56587.1| Radical SAM domain protein [Methanoculleus marisnigri JR1] Length = 303 Score = 49.5 bits (117), Expect = 9e-04, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 61/174 (35%), Gaps = 25/174 (14%) Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVML 239 I + G GEPL N + ++L + + F + +ST+G I + + + Sbjct: 98 IGIAGPGEPLANPE-TFEALRLVHEE----FPHLIMCISTNGLMLPEYIEELAKYDVGNI 152 Query: 240 AISLHAVSNDLRNILVPI----NRKYPLEMLIDACRHYP------GLSNARRITFEYVML 289 I+L+AV + + ++Y + ++ + V + Sbjct: 153 TITLNAVDPAIGEKIYAWVDYKGKRYHGREAAEILLSQQLKGIEMAVAKKIFVKINTVYI 212 Query: 290 KGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEY---LCSDQKDIVTFSE 339 GIND + K + + A N+IP P ++ K+ + Sbjct: 213 PGIND--EHIPEIAKKVGEMGAFTFNVIPV--IPQYKFAHITPPTPKEKREMQD 262 >gi|15800763|ref|NP_286777.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli O157:H7 EDL933] gi|15830239|ref|NP_309012.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli O157:H7 str. Sakai] gi|16128869|ref|NP_415422.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli str. K-12 substr. MG1655] gi|30062437|ref|NP_836608.1| pyruvate formate lyase-activating enzyme 1 [Shigella flexneri 2a str. 2457T] gi|56479766|ref|NP_706820.2| pyruvate formate lyase-activating enzyme 1 [Shigella flexneri 2a str. 301] gi|74311458|ref|YP_309877.1| pyruvate formate lyase-activating enzyme 1 [Shigella sonnei Ss046] gi|82544640|ref|YP_408587.1| pyruvate formate lyase-activating enzyme 1 [Shigella boydii Sb227] gi|82777578|ref|YP_403927.1| pyruvate formate lyase-activating enzyme 1 [Shigella dysenteriae Sd197] gi|89107752|ref|AP_001532.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli str. K-12 substr. W3110] gi|110641099|ref|YP_668829.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli 536] gi|110804910|ref|YP_688430.1| pyruvate formate lyase-activating enzyme 1 [Shigella flexneri 5 str. 8401] gi|157160424|ref|YP_001457742.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli HS] gi|161486262|ref|NP_752967.2| pyruvate formate lyase-activating enzyme 1 [Escherichia coli CFT073] gi|162138459|ref|YP_539989.2| pyruvate formate lyase-activating enzyme 1 [Escherichia coli UTI89] gi|168752115|ref|ZP_02777137.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC4113] gi|168756994|ref|ZP_02782001.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC4401] gi|168762963|ref|ZP_02787970.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC4501] gi|168769896|ref|ZP_02794903.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC4486] gi|168776246|ref|ZP_02801253.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC4196] gi|168783813|ref|ZP_02808820.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC4076] gi|168787331|ref|ZP_02812338.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC869] gi|168801415|ref|ZP_02826422.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC508] gi|170020696|ref|YP_001725650.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli ATCC 8739] gi|170080560|ref|YP_001729880.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli str. K-12 substr. DH10B] gi|188492165|ref|ZP_02999435.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 53638] gi|191172048|ref|ZP_03033592.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli F11] gi|193064616|ref|ZP_03045695.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli E22] gi|193070729|ref|ZP_03051664.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli E110019] gi|194428375|ref|ZP_03060916.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B171] gi|194434403|ref|ZP_03066666.1| pyruvate formate-lyase 1-activating enzyme [Shigella dysenteriae 1012] gi|194438701|ref|ZP_03070788.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 101-1] gi|195939563|ref|ZP_03084945.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli O157:H7 str. EC4024] gi|208805965|ref|ZP_03248302.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC4206] gi|208815370|ref|ZP_03256549.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC4045] gi|208822382|ref|ZP_03262701.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC4042] gi|209400841|ref|YP_002269574.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC4115] gi|209918152|ref|YP_002292236.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli SE11] gi|215486027|ref|YP_002328458.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli O127:H6 str. E2348/69] gi|217324861|ref|ZP_03440945.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. TW14588] gi|218548419|ref|YP_002382210.1| pyruvate formate lyase-activating enzyme 1 [Escherichia fergusonii ATCC 35469] gi|218553488|ref|YP_002386401.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli IAI1] gi|218557807|ref|YP_002390720.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli S88] gi|218688742|ref|YP_002396954.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli ED1a] gi|218694375|ref|YP_002402042.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli 55989] gi|218700580|ref|YP_002408209.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli IAI39] gi|218704329|ref|YP_002411848.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli UMN026] gi|238900160|ref|YP_002925956.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli BW2952] gi|253774069|ref|YP_003036900.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161016|ref|YP_003044124.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli B str. REL606] gi|254792101|ref|YP_003076938.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli O157:H7 str. TW14359] gi|256020970|ref|ZP_05434835.1| pyruvate formate lyase-activating enzyme 1 [Shigella sp. D9] gi|256023397|ref|ZP_05437262.1| pyruvate formate lyase-activating enzyme 1 [Escherichia sp. 4_1_40B] gi|260843152|ref|YP_003220930.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli O103:H2 str. 12009] gi|260854193|ref|YP_003228084.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli O26:H11 str. 11368] gi|260867074|ref|YP_003233476.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli O111:H- str. 11128] gi|261227405|ref|ZP_05941686.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli O157:H7 str. FRIK2000] gi|261256172|ref|ZP_05948705.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli O157:H7 str. FRIK966] gi|291281903|ref|YP_003498721.1| Pyruvate formate lyase-activating enzyme 1 [Escherichia coli O55:H7 str. CB9615] gi|293409279|ref|ZP_06652855.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B354] gi|297519591|ref|ZP_06937977.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli OP50] gi|306812645|ref|ZP_07446838.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli NC101] gi|307137531|ref|ZP_07496887.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli H736] gi|307311711|ref|ZP_07591351.1| pyruvate formate-lyase activating enzyme [Escherichia coli W] gi|309784023|ref|ZP_07678667.1| pyruvate formate-lyase 1-activating enzyme [Shigella dysenteriae 1617] gi|312969032|ref|ZP_07783239.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 2362-75] gi|312971030|ref|ZP_07785209.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 1827-70] gi|331656972|ref|ZP_08357934.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA206] gi|331662315|ref|ZP_08363238.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA143] gi|331667278|ref|ZP_08368143.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA271] gi|331682409|ref|ZP_08383028.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H299] gi|71159621|sp|P0A9N6|PFLA_ECO57 RecName: Full=Pyruvate formate-lyase 1-activating enzyme; AltName: Full=Formate-C-acetyltransferase-activating enzyme 1; AltName: Full=PFL-activating enzyme 1 gi|71159622|sp|P0A9N5|PFLA_ECOL6 RecName: Full=Pyruvate formate-lyase 1-activating enzyme; AltName: Full=Formate-C-acetyltransferase-activating enzyme 1; AltName: Full=PFL-activating enzyme 1 gi|71159623|sp|P0A9N4|PFLA_ECOLI RecName: Full=Pyruvate formate-lyase 1-activating enzyme; AltName: Full=Formate-C-acetyltransferase-activating enzyme 1; AltName: Full=PFL-activating enzyme 1 gi|71159624|sp|P0A9N7|PFLA_SHIFL RecName: Full=Pyruvate formate-lyase 1-activating enzyme; AltName: Full=Formate-C-acetyltransferase-activating enzyme 1; AltName: Full=PFL-activating enzyme 1 gi|12514065|gb|AAG55387.1|AE005279_7 pyruvate formate lyase activating enzyme 1 [Escherichia coli O157:H7 str. EDL933] gi|42371|emb|CAA30829.1| unnamed protein product [Escherichia coli K-12] gi|1787130|gb|AAC73988.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli str. K-12 substr. MG1655] gi|4062478|dbj|BAA35637.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli str. K12 substr. W3110] gi|13360444|dbj|BAB34408.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli O157:H7 str. Sakai] gi|30040683|gb|AAP16414.1| pyruvate formate lyase activating enzyme 1 [Shigella flexneri 2a str. 2457T] gi|56383317|gb|AAN42527.2| pyruvate formate lyase activating enzyme 1 [Shigella flexneri 2a str. 301] gi|73854935|gb|AAZ87642.1| pyruvate formate lyase activating enzyme 1 [Shigella sonnei Ss046] gi|81241726|gb|ABB62436.1| pyruvate formate lyase activating enzyme 1 [Shigella dysenteriae Sd197] gi|81246051|gb|ABB66759.1| pyruvate formate lyase activating enzyme 1 [Shigella boydii Sb227] gi|110342691|gb|ABG68928.1| pyruvate formate-lyase 1 activating enzyme [Escherichia coli 536] gi|110614458|gb|ABF03125.1| pyruvate formate lyase activating enzyme 1 [Shigella flexneri 5 str. 8401] gi|157066104|gb|ABV05359.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli HS] gi|169755624|gb|ACA78323.1| pyruvate formate-lyase activating enzyme [Escherichia coli ATCC 8739] gi|169888395|gb|ACB02102.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli str. K-12 substr. DH10B] gi|187768338|gb|EDU32182.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC4196] gi|188013962|gb|EDU52084.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC4113] gi|188487364|gb|EDU62467.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 53638] gi|188998898|gb|EDU67884.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC4076] gi|189355900|gb|EDU74319.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC4401] gi|189361165|gb|EDU79584.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC4486] gi|189366831|gb|EDU85247.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC4501] gi|189372637|gb|EDU91053.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC869] gi|189376430|gb|EDU94846.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC508] gi|190907575|gb|EDV67170.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli F11] gi|192927673|gb|EDV82288.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli E22] gi|192955922|gb|EDV86390.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli E110019] gi|194413590|gb|EDX29871.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B171] gi|194417387|gb|EDX33493.1| pyruvate formate-lyase 1-activating enzyme [Shigella dysenteriae 1012] gi|194422333|gb|EDX38333.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 101-1] gi|208725766|gb|EDZ75367.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC4206] gi|208732018|gb|EDZ80706.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC4045] gi|208737867|gb|EDZ85550.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC4042] gi|209162241|gb|ACI39674.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. EC4115] gi|209748614|gb|ACI72614.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli] gi|209748616|gb|ACI72615.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli] gi|209748618|gb|ACI72616.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli] gi|209911411|dbj|BAG76485.1| pyruvate formate-lyase 1 activating enzyme [Escherichia coli SE11] gi|215264099|emb|CAS08443.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli O127:H6 str. E2348/69] gi|217321082|gb|EEC29506.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli O157:H7 str. TW14588] gi|218351107|emb|CAU96811.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli 55989] gi|218355960|emb|CAQ88576.1| pyruvate formate lyase activating enzyme 1 [Escherichia fergusonii ATCC 35469] gi|218360256|emb|CAQ97806.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli IAI1] gi|218364576|emb|CAR02262.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli S88] gi|218370566|emb|CAR18373.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli IAI39] gi|218426306|emb|CAR07131.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli ED1a] gi|218431426|emb|CAR12304.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli UMN026] gi|222032633|emb|CAP75372.1| Pyruvate formate-lyase 1-activating enzyme [Escherichia coli LF82] gi|238863358|gb|ACR65356.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli BW2952] gi|242376717|emb|CAQ31430.1| pyruvate formate-lyase activating enzyme [Escherichia coli BL21(DE3)] gi|253325113|gb|ACT29715.1| pyruvate formate-lyase activating enzyme [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972917|gb|ACT38588.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli B str. REL606] gi|253977131|gb|ACT42801.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli BL21(DE3)] gi|254591501|gb|ACT70862.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli O157:H7 str. TW14359] gi|257752842|dbj|BAI24344.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli O26:H11 str. 11368] gi|257758299|dbj|BAI29796.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli O103:H2 str. 12009] gi|257763430|dbj|BAI34925.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli O111:H- str. 11128] gi|260449952|gb|ACX40374.1| pyruvate formate-lyase activating enzyme [Escherichia coli DH1] gi|281178033|dbj|BAI54363.1| pyruvate formate-lyase 1 activating enzyme [Escherichia coli SE15] gi|281600262|gb|ADA73246.1| Pyruvate formate lyase-activating enzyme 1 [Shigella flexneri 2002017] gi|284920753|emb|CBG33816.1| pyruvate formate-lyase 1 activating enzyme [Escherichia coli 042] gi|290761776|gb|ADD55737.1| Pyruvate formate lyase-activating enzyme 1 [Escherichia coli O55:H7 str. CB9615] gi|291469747|gb|EFF12231.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B354] gi|305853408|gb|EFM53847.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli NC101] gi|306908266|gb|EFN38765.1| pyruvate formate-lyase activating enzyme [Escherichia coli W] gi|307552741|gb|ADN45516.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli ABU 83972] gi|307627671|gb|ADN71975.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli UM146] gi|308928166|gb|EFP73629.1| pyruvate formate-lyase 1-activating enzyme [Shigella dysenteriae 1617] gi|309701178|emb|CBJ00478.1| pyruvate formate-lyase 1 activating enzyme [Escherichia coli ETEC H10407] gi|310336791|gb|EFQ01958.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 1827-70] gi|312286434|gb|EFR14347.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 2362-75] gi|312945422|gb|ADR26249.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli O83:H1 str. NRG 857C] gi|313648452|gb|EFS12895.1| pyruvate formate-lyase 1-activating enzyme [Shigella flexneri 2a str. 2457T] gi|315060187|gb|ADT74514.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli W] gi|315135550|dbj|BAJ42709.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli DH1] gi|315619096|gb|EFU99676.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 3431] gi|320173243|gb|EFW48452.1| Pyruvate formate-lyase activating enzyme [Shigella dysenteriae CDC 74-1112] gi|320182031|gb|EFW56936.1| Pyruvate formate-lyase activating enzyme [Shigella boydii ATCC 9905] gi|320184266|gb|EFW59079.1| Pyruvate formate-lyase activating enzyme [Shigella flexneri CDC 796-83] gi|320192612|gb|EFW67253.1| Pyruvate formate-lyase activating enzyme [Escherichia coli O157:H7 str. EC1212] gi|320196604|gb|EFW71227.1| Pyruvate formate-lyase activating enzyme [Escherichia coli WV_060327] gi|320202298|gb|EFW76869.1| Pyruvate formate-lyase activating enzyme [Escherichia coli EC4100B] gi|320637770|gb|EFX07562.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli O157:H7 str. G5101] gi|320653668|gb|EFX21742.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659813|gb|EFX27369.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli O55:H7 str. USDA 5905] gi|320664282|gb|EFX31433.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli O157:H7 str. LSU-61] gi|323157211|gb|EFZ43334.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli EPECa14] gi|323159528|gb|EFZ45508.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli E128010] gi|323165367|gb|EFZ51154.1| pyruvate formate-lyase 1-activating enzyme [Shigella sonnei 53G] gi|323175475|gb|EFZ61070.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 1180] gi|323185392|gb|EFZ70756.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 1357] gi|323190722|gb|EFZ75991.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli RN587/1] gi|323379256|gb|ADX51524.1| pyruvate formate-lyase activating enzyme [Escherichia coli KO11] gi|323938008|gb|EGB34270.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli E1520] gi|323942818|gb|EGB38983.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli E482] gi|323947309|gb|EGB43317.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H120] gi|323953391|gb|EGB49257.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H252] gi|323958207|gb|EGB53916.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H263] gi|323962894|gb|EGB58468.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H489] gi|323967149|gb|EGB62573.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli M863] gi|323973225|gb|EGB68417.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA007] gi|323976711|gb|EGB71799.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TW10509] gi|325496842|gb|EGC94701.1| pyruvate formate lyase-activating enzyme 1 [Escherichia fergusonii ECD227] gi|326338203|gb|EGD62032.1| Pyruvate formate-lyase activating enzyme [Escherichia coli O157:H7 str. 1125] gi|326346180|gb|EGD69918.1| Pyruvate formate-lyase activating enzyme [Escherichia coli O157:H7 str. 1044] gi|327253691|gb|EGE65320.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli STEC_7v] gi|330910682|gb|EGH39192.1| pyruvate formate-lyase activating enzyme [Escherichia coli AA86] gi|331055220|gb|EGI27229.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA206] gi|331060737|gb|EGI32701.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA143] gi|331065634|gb|EGI37527.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA271] gi|331080040|gb|EGI51219.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H299] gi|332093544|gb|EGI98602.1| pyruvate formate-lyase 1-activating enzyme [Shigella boydii 3594-74] gi|332095904|gb|EGJ00911.1| pyruvate formate-lyase 1-activating enzyme [Shigella dysenteriae 155-74] gi|332342345|gb|AEE55679.1| pyruvate formate-lyase 1-activating enzyme PflA [Escherichia coli UMNK88] gi|332760073|gb|EGJ90371.1| pyruvate formate-lyase 1-activating enzyme [Shigella flexneri 2747-71] gi|332762668|gb|EGJ92931.1| pyruvate formate-lyase 1-activating enzyme [Shigella flexneri K-671] gi|333006341|gb|EGK25849.1| pyruvate formate-lyase 1-activating enzyme [Shigella flexneri VA-6] gi|333006966|gb|EGK26461.1| pyruvate formate-lyase 1-activating enzyme [Shigella flexneri K-218] gi|333019965|gb|EGK39236.1| pyruvate formate-lyase 1-activating enzyme [Shigella flexneri K-304] Length = 246 Score = 49.5 bits (117), Expect = 9e-04, Method: Composition-based stats. Identities = 37/249 (14%), Positives = 84/249 (33%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T E+++ +V+ R + G G Sbjct: 29 GCLMRCLYCHNRDTWDTHGGKE--VTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAE 86 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 + + ++ G+ L T+GFV P I + E Sbjct: 87 FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLE 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L +++++ LV ++ LE Y N ++ YV++ G + Sbjct: 123 VTD-LVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAKYLANKN-VKVWIRYVVVPGWS 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 D A L + + + KI L+P++ ++ ++ + Sbjct: 176 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 235 Query: 340 CIKRSGYSS 348 +++ G+ Sbjct: 236 ILEQYGHKV 244 >gi|330446644|ref|ZP_08310296.1| pyruvate formate-lyase 1-activating enzyme [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490835|dbj|GAA04793.1| pyruvate formate-lyase 1-activating enzyme [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 246 Score = 49.5 bits (117), Expect = 9e-04, Method: Composition-based stats. Identities = 37/241 (15%), Positives = 82/241 (34%), Gaps = 46/241 (19%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C +C+ + E + +++ F Sbjct: 29 GCLMRCQYCH-NRDTWDTHGGREATVDELMHEAKSYRHFMNSSGGG-------------- 73 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN----IARVGEEIGVM 238 V GE + + V+ A+ + G+ L T+G++ I V + + Sbjct: 74 VTASGGEAMLQPEFVRDFFR-AAQAEGI-----HTCLDTNGYIRKHTDVIDEVLDATD-L 126 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 + + L + + + LV P + ++D R+ ++ YV++ G D R Sbjct: 127 VMLDLKQMDDSIHQNLV----GVPNKRVLDFARYLHQR--GQKTWIRYVVVPGYTDDERS 180 Query: 299 ALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIKRS 344 A L + +K + K+ L+P++ ++ ++ + T E + Sbjct: 181 AHLLGEFIKDMDNIEKVELLPYHQLGEHKWEAMGFDYPLKGVNPPKKETMETIKEILSSY 240 Query: 345 G 345 G Sbjct: 241 G 241 >gi|187734201|ref|YP_001880903.1| pyruvate formate lyase-activating enzyme 1 [Shigella boydii CDC 3083-94] gi|227884133|ref|ZP_04001938.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 83972] gi|237707110|ref|ZP_04537591.1| pyruvate formate-lyase 1 activating enzyme [Escherichia sp. 3_2_53FAA] gi|293404208|ref|ZP_06648202.1| pflA [Escherichia coli FVEC1412] gi|293414182|ref|ZP_06656831.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B185] gi|293433199|ref|ZP_06661627.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B088] gi|298379988|ref|ZP_06989593.1| pflA [Escherichia coli FVEC1302] gi|300816995|ref|ZP_07097214.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 107-1] gi|300823641|ref|ZP_07103768.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 119-7] gi|300901670|ref|ZP_07119730.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 198-1] gi|300902940|ref|ZP_07120885.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 84-1] gi|300921063|ref|ZP_07137448.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 115-1] gi|300929596|ref|ZP_07145058.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 187-1] gi|300937598|ref|ZP_07152408.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 21-1] gi|300949737|ref|ZP_07163715.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 116-1] gi|300955451|ref|ZP_07167825.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 175-1] gi|300978474|ref|ZP_07174289.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 45-1] gi|300983149|ref|ZP_07176463.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 200-1] gi|301047840|ref|ZP_07194891.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 185-1] gi|301302491|ref|ZP_07208622.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 124-1] gi|301325772|ref|ZP_07219222.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 78-1] gi|301643421|ref|ZP_07243469.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 146-1] gi|309795288|ref|ZP_07689706.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 145-7] gi|331641428|ref|ZP_08342563.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H736] gi|331672441|ref|ZP_08373231.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA280] gi|331676690|ref|ZP_08377386.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H591] gi|332282193|ref|ZP_08394606.1| pyruvate formate-lyase 1 activating enzyme [Shigella sp. D9] gi|26107327|gb|AAN79510.1|AE016758_114 Pyruvate formate-lyase 1 activating enzyme [Escherichia coli CFT073] gi|91071577|gb|ABE06458.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli UTI89] gi|187431193|gb|ACD10467.1| pyruvate formate-lyase 1-activating enzyme [Shigella boydii CDC 3083-94] gi|226898320|gb|EEH84579.1| pyruvate formate-lyase 1 activating enzyme [Escherichia sp. 3_2_53FAA] gi|227838885|gb|EEJ49351.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli 83972] gi|291324018|gb|EFE63440.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B088] gi|291428794|gb|EFF01819.1| pflA [Escherichia coli FVEC1412] gi|291434240|gb|EFF07213.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli B185] gi|298279686|gb|EFI21194.1| pflA [Escherichia coli FVEC1302] gi|300300299|gb|EFJ56684.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 185-1] gi|300306983|gb|EFJ61503.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 200-1] gi|300317674|gb|EFJ67458.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 175-1] gi|300354963|gb|EFJ70833.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 198-1] gi|300405082|gb|EFJ88620.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 84-1] gi|300409651|gb|EFJ93189.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 45-1] gi|300411986|gb|EFJ95296.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 115-1] gi|300450885|gb|EFK14505.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 116-1] gi|300457377|gb|EFK20870.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 21-1] gi|300462433|gb|EFK25926.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 187-1] gi|300523841|gb|EFK44910.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 119-7] gi|300530347|gb|EFK51409.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 107-1] gi|300842330|gb|EFK70090.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 124-1] gi|300847444|gb|EFK75204.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 78-1] gi|301078135|gb|EFK92941.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 146-1] gi|308120938|gb|EFO58200.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 145-7] gi|315257942|gb|EFU37910.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 85-1] gi|315287536|gb|EFU46947.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 110-3] gi|315291232|gb|EFU50592.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 153-1] gi|324009847|gb|EGB79066.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 57-2] gi|324012960|gb|EGB82179.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 60-1] gi|324019090|gb|EGB88309.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli MS 117-3] gi|331038226|gb|EGI10446.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H736] gi|331070347|gb|EGI41712.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli TA280] gi|331075379|gb|EGI46677.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli H591] gi|332104545|gb|EGJ07891.1| pyruvate formate-lyase 1 activating enzyme [Shigella sp. D9] Length = 255 Score = 49.5 bits (117), Expect = 9e-04, Method: Composition-based stats. Identities = 37/249 (14%), Positives = 84/249 (33%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T E+++ +V+ R + G G Sbjct: 38 GCLMRCLYCHNRDTWDTHGGKE--VTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAE 95 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 + + ++ G+ L T+GFV P I + E Sbjct: 96 FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLE 131 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L +++++ LV ++ LE Y N ++ YV++ G + Sbjct: 132 VTD-LVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAKYLANKN-VKVWIRYVVVPGWS 184 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 D A L + + + KI L+P++ ++ ++ + Sbjct: 185 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 244 Query: 340 CIKRSGYSS 348 +++ G+ Sbjct: 245 ILEQYGHKV 253 >gi|291166144|gb|EFE28190.1| radical SAM domain protein [Filifactor alocis ATCC 35896] Length = 462 Score = 49.5 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 68/197 (34%), Gaps = 24/197 (12%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP-GCEDIEGMVIP 173 +C+ C+L C +C+ K + L F G + ++ ++ Sbjct: 98 AMCLHVAHTCNLACDYCFAKQGK--------------YHGKDGLMSFEVGKKALDFLIEH 143 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARV 231 S R + G GEPL N++ VK+ ++ K R TL+T+G + I Sbjct: 144 SGTRTNLEVDFFG-GEPLMNWEVVKQLVAYGRSQEKEKKKKFRFTLTTNGVLLDDEIIEF 202 Query: 232 G--EEIGVMLAISLHAVS-NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVM 288 E V+L++ + R L K ++++ + + N Sbjct: 203 ANKEMYNVVLSLDGRKEIHDRFRKNL---AGKGSYDLIVPKFQKFTKSRNDAGYYVRGTY 259 Query: 289 LKGINDSPRDALNLIKI 305 D D ++ + Sbjct: 260 THHNVDFTEDIFHMSDL 276 >gi|170681252|ref|YP_001744269.1| pyruvate formate lyase-activating enzyme 1 [Escherichia coli SMS-3-5] gi|170518970|gb|ACB17148.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli SMS-3-5] Length = 246 Score = 49.5 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 36/249 (14%), Positives = 84/249 (33%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T E+++ +V+ R + G G Sbjct: 29 GCLMRCLYCHNRDTWDTHGGKE--VTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAE 86 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 + + ++ G+ L T+GFV P I + E Sbjct: 87 FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLE 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L +++++ LV ++ LE Y + ++ YV++ G + Sbjct: 123 VTD-LVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAKYLANKD-VKVWIRYVVVPGWS 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 D A L + + + KI L+P++ ++ ++ + Sbjct: 176 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKS 235 Query: 340 CIKRSGYSS 348 +++ G+ Sbjct: 236 ILEQYGHKV 244 >gi|75759721|ref|ZP_00739802.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228904932|ref|ZP_04068985.1| Radical SAM domain protein [Bacillus thuringiensis IBL 4222] gi|74492798|gb|EAO55933.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228854707|gb|EEM99312.1| Radical SAM domain protein [Bacillus thuringiensis IBL 4222] Length = 468 Score = 49.5 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 43/248 (17%), Positives = 88/248 (35%), Gaps = 30/248 (12%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC++ C+L+C +C+ K N R+++ G I+ ++ S Sbjct: 100 ALCLNVAHTCNLSCEYCFASQGKYNGN-------------RAIMSFEVGKRAIDFLLENS 146 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVG 232 + ++ G GEPL + VK+ ++ A + R T +T+G + I Sbjct: 147 GNHRNLDVDFFG-GEPLMAWKTVKQIVAYARNKEKEYKKTFRFTFTTNGMLLNDEITEFL 205 Query: 233 EEIGVMLAISL---HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 + + +SL V + LR +N K ++ + + + Sbjct: 206 NQEMHNVVLSLDGRKKVHDYLRK---TVNGKGSYNHIVPKFQEFVEKRGDKEYYVRGTYT 262 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK--DIVTFSECIKRSGYS 347 D D ++ + G KI++ P Y ++ +I E + + + Sbjct: 263 HNNVDFTNDIYHIADL--GFN-KISMEPVICNSQEPYALCEEDLLEIYNQYEILSKEMLN 319 Query: 348 SPIRTPRG 355 R +G Sbjct: 320 ---REEKG 324 >gi|315634844|ref|ZP_07890126.1| pyruvate formate-lyase activating enzyme [Aggregatibacter segnis ATCC 33393] gi|315476396|gb|EFU67146.1| pyruvate formate-lyase activating enzyme [Aggregatibacter segnis ATCC 33393] Length = 246 Score = 49.5 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 36/245 (14%), Positives = 81/245 (33%), Gaps = 48/245 (19%) Query: 123 GCSLTCSFCYTGT-----QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C+ +T EE++ +V+ R + G G Sbjct: 29 GCLMRCKYCHNRDTWDLHGGKE--VTVEELMKEVVSYRHFMNASGGGVTASGGEAILQAE 86 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 + + E +S D+ G + I + + + Sbjct: 87 FVRDWFQACKKEG----------ISTCLDTNGF----------VRHYDHVIDELIDATDL 126 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 +L + L +++ + L+ ++ K LE Y N + YV++ G DS Sbjct: 127 VL-LDLKELNDQVHQNLIGVSNKRTLE-----FAKYLQKRNQ-PVWIRYVVVPGYTDSDH 179 Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIKR 343 D L + ++G+ K+ L+P++ ++ ++ + ++ Sbjct: 180 DVHLLGQFIEGMTNIEKVELLPYHRLGAHKWAAMGEKYELEEVNPPTKESLEHIKNILEG 239 Query: 344 SGYSS 348 G+ Sbjct: 240 YGHIV 244 >gi|322832184|ref|YP_004212211.1| pyruvate formate-lyase activating enzyme [Rahnella sp. Y9602] gi|321167385|gb|ADW73084.1| pyruvate formate-lyase activating enzyme [Rahnella sp. Y9602] Length = 265 Score = 49.5 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 41/249 (16%), Positives = 85/249 (34%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + N+ ++++ +V+ R + G Sbjct: 48 GCLMRCMYCHNRDTWDTHGGKEINV--DDLMKEVVTYRHFMNASGGG------------- 92 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 V GE + + V+ A G++ L T+GFV P I + + Sbjct: 93 -----VTASGGEAILQAEFVRDWFR-ACQKEGIN-----TCLDTNGFVRRYDPVIDELLD 141 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L +++D+ LV ++ L+ Y N R YV++ G + Sbjct: 142 VSD-LVMLDLKQMNDDIHQNLVGVSNHRTLD-----FARYLAKRNQ-RTWIRYVVVPGWS 194 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSE 339 D A L + K + KI L+P++ ++ ++ + Sbjct: 195 DDDDSAHKLGEFTKDMTNIEKIELLPYHELGKHKWTAMGEKYGLDGVNPPTKEIMERVKN 254 Query: 340 CIKRSGYSS 348 + G+ Sbjct: 255 ILASYGHKV 263 >gi|323341819|ref|ZP_08082052.1| putative radical SAM [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464244|gb|EFY09437.1| putative radical SAM [Erysipelothrix rhusiopathiae ATCC 19414] Length = 462 Score = 49.5 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 82/248 (33%), Gaps = 63/248 (25%) Query: 123 GCSLTCSFC-YTGTQKLVR------NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175 GC+L CS+C Y+ R N+T E E I S Sbjct: 87 GCNLRCSYCPYSQENTFTRSHNNSLNMTVE----------------TARESILFYAQHSR 130 Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI 235 NI G GEP+ NF +K+++ + G + S +T + + NI + Sbjct: 131 DCNNKNIAFYG-GEPIFNFKLIKEAVEFGNKMFGENVS-YHMTTNATLLTRNILEFLDTN 188 Query: 236 GVMLAISLHAVSNDLRNILVPINRKYP---LEMLIDACRHYPGLSNARRITFEYVMLKGI 292 L IS+ N + NRK+ L + + + Y+ + + Sbjct: 189 DFRLMISIDGPEN-----INDRNRKFSNGHLGVFKRVIDKIELIKKDYPCLYRYLSINMV 243 Query: 293 NDSPRDALNLIKILKGIPAKINLIPFNPWPGC-EYLCSDQKDIVTFSECIKRSGYSSPIR 351 L P N + +++ S+ + F + G ++ I Sbjct: 244 ----------------------LTPDNTFTEYQDFIQSN---MYIFKDI----GVNASIV 274 Query: 352 TPRGLDIL 359 + GLDI Sbjct: 275 SEIGLDIS 282 >gi|290473883|ref|YP_003466757.1| pyruvate formate lyase activating enzyme 1 [Xenorhabdus bovienii SS-2004] gi|289173190|emb|CBJ79963.1| pyruvate formate lyase activating enzyme 1 [Xenorhabdus bovienii SS-2004] Length = 246 Score = 49.5 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 38/249 (15%), Positives = 80/249 (32%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T EE++ + R + G Sbjct: 29 GCLMRCLYCHNRDTWNTHGGTT--VTVEELIKEATTYRHFMNASGGG------------- 73 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN----IARVGE 233 V GE + + V+ L T+GFV I + + Sbjct: 74 -----VTASGGEAILQAEFVRDWFRACHAEN------IHTCLDTNGFVRRYDLIIDELLD 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 + ++ + L + +++ L+ ++ LE HY N + YV++ G + Sbjct: 123 DTD-LVMLDLKQLDDEIHQKLIGVSNHRTLE-----FAHYLAKLNQ-KTWIRYVVVPGWS 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 D + L + K + KI L+P++ ++ ++ + E Sbjct: 176 DDDKSIHMLGEFTKDMKNIEKIELLPYHELGKHKWIAMGEEYKLEGVKPPSKETMERVKE 235 Query: 340 CIKRSGYSS 348 + G+ Sbjct: 236 ILVSYGHHV 244 >gi|227872098|ref|ZP_03990471.1| radical SAM domain protein [Oribacterium sinus F0268] gi|227842047|gb|EEJ52304.1| radical SAM domain protein [Oribacterium sinus F0268] Length = 459 Score = 49.5 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 64/200 (32%), Gaps = 28/200 (14%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L CS+C+ E L+ G ++ ++ S Sbjct: 99 ALCLLVAHSCNLACSYCFASQG-----HYHGE--------SGLMSFETGKRALDFLIENS 145 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSL---SIASDSMGLSFSKRRITLST--SGFVPNIA 229 R+ + G GEPL NF K + G +F R TL+T G I Sbjct: 146 GTRRNLEVDFFG-GEPLVNFQVCKDLVAYARSIEKEKGKNF---RFTLTTNGVGLTEEIM 201 Query: 230 RVGEEIGVMLAISL---HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286 E + +SL V++ R V K + ++ + + + Sbjct: 202 DWANEECHNVVLSLDGRKEVNDRFR---VDRKGKGSYDQIVPKFQRFVEKRGDKEYYMRG 258 Query: 287 VMLKGINDSPRDALNLIKIL 306 D D ++ L Sbjct: 259 TFSHFNTDFTEDIAHMADEL 278 >gi|315630423|ref|YP_004090310.1| Radical SAM domain protein [Ruminococcus albus 7] gi|315450863|gb|ADU24424.1| Radical SAM domain protein [Ruminococcus albus 7] Length = 470 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 80/249 (32%), Gaps = 27/249 (10%) Query: 99 GPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL-QVLLARSL 157 +IE + + + C+ C +C + L + + + Sbjct: 54 DSHDIEEYILKYGLGQMVLEVTNR-CNFRCEYCI-----FSEHYQGHSKLENENMTLETA 107 Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217 + D+ + I G GEPL NFD VKK + A + K R+ Sbjct: 108 IRAIDMYMDLIEKGKIYNPERTPIIGFYG-GEPLLNFDLVKKCVEYAKERY-----KGRV 161 Query: 218 TLSTSG----FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH- 272 S + ++ E M SL + NRK L Sbjct: 162 LFSITSNAYLLNDEASKFMAENDFMPIFSLDGP-----QKIHDSNRK--LAGGKGTFERV 214 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEYLCSD 330 Y + N R+T M+ + D D L++ ++L P NP+ Y D Sbjct: 215 YQNIRNYARVTNSIPMINSVYDYNTDMEELMEFWSEQNEMVLLSLSPVNPYDTDYYNSFD 274 Query: 331 QKDIVTFSE 339 +K + TF E Sbjct: 275 EKTVKTFFE 283 >gi|261253301|ref|ZP_05945874.1| pyruvate formate-lyase activating enzyme [Vibrio orientalis CIP 102891] gi|260936692|gb|EEX92681.1| pyruvate formate-lyase activating enzyme [Vibrio orientalis CIP 102891] Length = 215 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 36/246 (14%), Positives = 82/246 (33%), Gaps = 56/246 (22%) Query: 126 LTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 + C +C + +T EEI+ + R + G Sbjct: 1 MRCKYCHNRDTWDTHDGKE--VTVEEIISEAKSYRHFMNASGGG---------------- 42 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN----IARVGEEIG 236 V GE + + V+ A+ + G+ L T+G++ I V E Sbjct: 43 --VTCSGGEAMLQPEFVRDFFR-AAHNEGI-----HTCLDTNGYIRKHTEVIDEVLEATD 94 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 +++ H + + N++ +D R+ + ++ YV++ G D P Sbjct: 95 LVMLDLKHMKDEVHHDFIGVSNKR-----TLDFARYLHKI--GQKTWIRYVVVPGYTDDP 147 Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIK 342 A L + +K + KI L+P++ ++ ++ + + ++ Sbjct: 148 EAAHMLGEFIKDMDNIEKIELLPYHKLGAHKWEALGLEYPLEGTNPPSKEVMDSIVSILE 207 Query: 343 RSGYSS 348 + + Sbjct: 208 QYHSNV 213 >gi|291279225|ref|YP_003496060.1| hypothetical protein DEFDS_0828 [Deferribacter desulfuricans SSM1] gi|290753927|dbj|BAI80304.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 308 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 40/193 (20%), Positives = 74/193 (38%), Gaps = 29/193 (15%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 CSL C +C G T EI P E +I + I ++V Sbjct: 27 CSLDCVYCEVGK------TTDFEI-------ERKRFFAPDDLLSEFKIIYERKKDIIDVV 73 Query: 184 -MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 G GEP N D L+ + + + + + + T+G + V E+ L Sbjct: 74 TFTGAGEPTLNID-----LTYLASEVKKNI-DKPLAVLTNGTLLFREDVRNEL---LIFD 124 Query: 243 LHAV-SNDLRNILVPI-NRKYP---LEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 + + + + NR +P +E +I + + + ++ E +++KG+NDS Sbjct: 125 IVVPSFDAVSEDIFKRVNRPHPELKIEKIIKGLKEFSQI-FKGKLFVEILLVKGVNDSNE 183 Query: 298 DALNLIKILKGIP 310 + + +LK I Sbjct: 184 ELDKIANVLKDIN 196 >gi|242277914|ref|YP_002990043.1| nitrogenase cofactor biosynthesis protein NifB [Desulfovibrio salexigens DSM 2638] gi|242120808|gb|ACS78504.1| nitrogenase cofactor biosynthesis protein NifB [Desulfovibrio salexigens DSM 2638] Length = 423 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 37/240 (15%), Positives = 78/240 (32%), Gaps = 43/240 (17%) Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG---LSFSKRRIT 218 P + +I+ + G G+P N + +++ + + S + Sbjct: 58 PFQAAEYMDAVLEKEPRITVAGIAGPGDPFANPEETLETMRLLNKKHPHLIFCLSSNGM- 116 Query: 219 LSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYP------------LEML 266 G +P + + E + I++ A+ + + + LE Sbjct: 117 ----GILPYLDELKELGVSHVTITISAIDPKIGAKIYSWVKDGKVVYHGEKGAKVLLERQ 172 Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCE 325 + A + + +++ GIN+ + K+ + A I N+IP P Sbjct: 173 LAAIKGLKER--GITVKINSIVIPGINEH--HIAEVSKVCADLGADIQNMIPLKPTADTP 228 Query: 326 YL---CSDQKDI----VTFSECIKRSGYSSPIRTPR-------GLDILAA-CGQLKSLSK 370 + + I + I++ + R R G D A CG +KS S+ Sbjct: 229 FADIIEPGHETIGPLRKEACKVIEQM---THCRRCRADAVGLLGDDKSVALCGTMKSCSE 285 >gi|168998753|ref|YP_001688021.1| hypothetical protein pK2044_00975 [Klebsiella pneumoniae NTUH-K2044] Length = 369 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 61/144 (42%), Gaps = 8/144 (5%) Query: 223 GFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI 282 G R+ E L + L AV+ ++R ++P + +E ++A + ++ Sbjct: 215 GDAKWFTRMKEAGIDALGMHLEAVTPEVRARIMPGKAQVSVEQYLEAFADAVAVFGRGQV 274 Query: 283 TFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIK 342 + Y++ G+ D+P L+L + L G+ ++PF P G D S ++ Sbjct: 275 S-TYIL-AGLGDTPEAILSLSQTLIGLGVYPFVVPFVPISGTPLEHHPAPDSRFMSSILQ 332 Query: 343 RSGY---SSPIRTPRGLDILAACG 363 G + +R+ DI A CG Sbjct: 333 PLGQMLNQAHLRSS---DIKAGCG 353 >gi|38639531|ref|NP_943300.1| hypothetical protein LV045 [Klebsiella pneumoniae] gi|38016629|gb|AAR07650.1| hypothetical protein LV045 [Klebsiella pneumoniae] gi|238549777|dbj|BAH66128.1| hypothetical protein KP1_p235 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 380 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 61/144 (42%), Gaps = 8/144 (5%) Query: 223 GFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI 282 G R+ E L + L AV+ ++R ++P + +E ++A + ++ Sbjct: 226 GDAKWFTRMKEAGIDALGMHLEAVTPEVRARIMPGKAQVSVEQYLEAFADAVAVFGRGQV 285 Query: 283 TFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIK 342 + Y++ G+ D+P L+L + L G+ ++PF P G D S ++ Sbjct: 286 S-TYIL-AGLGDTPEAILSLSQTLIGLGVYPFVVPFVPISGTPLEHHPAPDSRFMSSILQ 343 Query: 343 RSGY---SSPIRTPRGLDILAACG 363 G + +R+ DI A CG Sbjct: 344 PLGQMLNQAHLRSS---DIKAGCG 364 >gi|268610260|ref|ZP_06143987.1| radical SAM family protein [Ruminococcus flavefaciens FD-1] Length = 455 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 70/181 (38%), Gaps = 30/181 (16%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 +C++ C L C +C+ T + R L+ G I+ ++ S Sbjct: 96 AMCLNIAHDCQLRCKYCFASTGDFGK-------------GRKLMSLETGKHAIDFLLENS 142 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV--- 231 R + G GEPL NF+ VK+ + A K R T++T+G + + ++ Sbjct: 143 GDRPNLELDFFG-GEPLMNFNVVKQIVEYARSREKEYNKKFRFTITTNGLLLDDDKIDFI 201 Query: 232 -GEEIGVMLAISLH-AVSNDLR---------NILVPINRKYPLEMLIDACRHYPGLSNAR 280 E V+L+I V++ R ++++P +K L +Y + Sbjct: 202 NKEMSNVVLSIDGRKEVNDYFRVLPNGQGCYDMIMPKYKK--LVEGRGDKEYYVRGTFTN 259 Query: 281 R 281 R Sbjct: 260 R 260 >gi|323174998|gb|EFZ60613.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli LT-68] Length = 246 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 37/249 (14%), Positives = 84/249 (33%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T E+++ +V+ R + G G Sbjct: 29 GCLMRCLYCHNRDTWDTHGGKE--VTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAE 86 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 + + ++ G+ L T+GFV P I + E Sbjct: 87 FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLE 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L +++++ LV ++ LE Y N ++ YV++ G + Sbjct: 123 VTD-LVMLDLKQMNDEIHQNLVGVSNHRTLE-----FTKYLANKN-VKVWIRYVVVPGWS 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 D A L + + + KI L+P++ ++ ++ + Sbjct: 176 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 235 Query: 340 CIKRSGYSS 348 +++ G+ Sbjct: 236 ILEQYGHKV 244 >gi|296116848|ref|ZP_06835454.1| iron-molybdenum cofactorbiosynthesis nitrogenase NifB [Gluconacetobacter hansenii ATCC 23769] gi|295976649|gb|EFG83421.1| iron-molybdenum cofactorbiosynthesis nitrogenase NifB [Gluconacetobacter hansenii ATCC 23769] Length = 369 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 50/143 (34%), Gaps = 16/143 (11%) Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 R+ + L + L A + +R ++P ++ ++A + ++ Y+ Sbjct: 223 FHRLRDAGADSLGMHLEAATQAVREKIMPGKATVSIDRYMEAFASAVPIFGRGQVN-TYI 281 Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVT----FSEC 340 + G+ DS D L L L + ++PF P G + + Sbjct: 282 L-AGLGDSAEDILALAGRLIALGVYPFVVPFVPISGTPLENHAPPSSDFMKSVLAPLGRM 340 Query: 341 IKRSGYSSPIRTPRGLDILAACG 363 ++ + S DI A CG Sbjct: 341 LREANMKST-------DIRAGCG 356 >gi|255067413|ref|ZP_05319268.1| pyruvate formate-lyase 1-activating enzyme [Neisseria sicca ATCC 29256] gi|255048383|gb|EET43847.1| pyruvate formate-lyase 1-activating enzyme [Neisseria sicca ATCC 29256] Length = 270 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 36/256 (14%), Positives = 79/256 (30%), Gaps = 74/256 (28%) Query: 123 GCSLTCSFCYTGTQKLVRN-----------LTAEEILLQVLLARSLLGDFPGCEDIEGMV 171 GC + C +C+ R+ +T E++ QV+ R L G G Sbjct: 51 GCLMRCLYCH------NRDTWDLHTEQAQEMTVPEVMKQVMSYRHYLRATGGGVTATGG- 103 Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKK--------SLSIASDSMGLSFSKRRITLSTSG 223 EPL ++ V+ + DS G + Sbjct: 104 -----------------EPLLQYEFVRDWFTACQEHDIHTCLDSNGYAL----------H 136 Query: 224 FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283 + + + + ++ + L + ++ +LV P + + R+ Sbjct: 137 YDSILDDLLDHTN-LVMLDLKQIDPEIHKVLV----GIPNTKTLKFAHYLAERKQPARV- 190 Query: 284 FEYVMLKGINDSPRDALNLIKILKGIPAK--INLIPFNPWPGCEY------------LCS 329 YV++ G D R A L + + + + L+P++ ++ Sbjct: 191 -RYVVVPGYTDDDRSAHLLGEFIADMDNVEMVELLPYHELGAHKWALCGDTYKLTGVHPP 249 Query: 330 DQKDIVTFSECIKRSG 345 ++ I+ ++ G Sbjct: 250 PKETILKIKSILESYG 265 >gi|300722527|ref|YP_003711817.1| pyruvate formate lyase activating enzyme 1 [Xenorhabdus nematophila ATCC 19061] gi|297629034|emb|CBJ89619.1| pyruvate formate lyase activating enzyme 1 [Xenorhabdus nematophila ATCC 19061] Length = 246 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 44/249 (17%), Positives = 84/249 (33%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T EE++ + R + G Sbjct: 29 GCLMRCLYCHNRDTWDTHGGKT--VTVEELVKEATTYRHFMNASGGG------------- 73 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN----IARVGE 233 V GE + + V+ A + G++ L T+GFV I + + Sbjct: 74 -----VTASGGEAILQAEFVRDWFR-ACHAEGIN-----TCLDTNGFVRRYDSIIDELLD 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L +++D+ LV ++ LE HY N R YV++ + Sbjct: 123 NTD-LVMLDLKQLNDDIHQKLVGVSNHRTLE-----FAHYLAKRNQ-RTWIRYVVVPDWS 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNP-------WPGCEYL-----CSDQKDIVTFSE 339 D L + K + KI L+P++ G EY ++ + + Sbjct: 176 DDDNSVHLLGEFTKNMKNIEKIELLPYHELGKHKWIAMGEEYKLDDVHPPSKETMDKVKD 235 Query: 340 CIKRSGYSS 348 + G+ Sbjct: 236 ILCSYGHHV 244 >gi|59712198|ref|YP_204974.1| pyruvate formate lyase-activating enzyme 1 [Vibrio fischeri ES114] gi|59480299|gb|AAW86086.1| pyruvate formate lyase activating enzyme 1 [Vibrio fischeri ES114] Length = 245 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 36/249 (14%), Positives = 83/249 (33%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T E++ + R + G G Sbjct: 28 GCLMRCMYCHNRDTWDTHDGKE--VTVAELIEEAKSYRHFMKASGGGITCSG-------- 77 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN----IARVGE 233 GE + + V+ A+ + G+ L T+G++ I V E Sbjct: 78 ----------GEAMLQPEFVRDFFR-AAQAEGI-----HTCLDTNGYIRKHTDVIDEVLE 121 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L + +D+ + ++ ++D R+ + ++ YV++ G Sbjct: 122 ASD-LVMLDLKQMKDDVHKEFIGVSNT----RVLDFARYLHKI--GQKTWIRYVIVPGYT 174 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSE 339 D A L +K + KI L+P++ ++ ++ + E Sbjct: 175 DDEESAHLLGNFIKDMDNIEKIELLPYHKLGAHKWEALGHDYPLEGVNPPSKETMEKMVE 234 Query: 340 CIKRSGYSS 348 + + + Sbjct: 235 ILSQYHNNV 243 >gi|51891252|ref|YP_073943.1| pyruvate formate lyase activating enzyme [Symbiobacterium thermophilum IAM 14863] gi|51854941|dbj|BAD39099.1| pyruvate formate lyase activating enzyme [Symbiobacterium thermophilum IAM 14863] Length = 255 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 43/279 (15%), Positives = 85/279 (30%), Gaps = 63/279 (22%) Query: 95 RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQV 151 R G +E+ + V Q GC L C +C+ T +T ++ ++ Sbjct: 14 RRTGRIHSVESCGAVDGPGLRFVVFVQ-GCPLRCRYCHNPDTWDPGQGAEVTVGSLIEEI 72 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK--------SLSI 203 + G + G EPL D V + Sbjct: 73 QSYVPYMKFSGGGVTVSGG------------------EPLLQPDFVADLFAECRRLFIHT 114 Query: 204 ASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPL 263 A D+ G + RV E+ ++L + + + LR+ + P Sbjct: 115 ALDTSGFA------------PPERARRVLEQTDLLL-LDIKHP-DLLRHKALTGVDGRPP 160 Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPW 321 + I YV++ G DSP D L +++ +P K+ L+P++ Sbjct: 161 RTT-----ARLAAAMGIPIWIRYVVVPGWTDSPADVEALADLVQTLPTVEKVELLPYHLL 215 Query: 322 PGCEYL------------CSDQKDIVTFSECIKRSGYSS 348 ++ ++ + + + G + Sbjct: 216 GRHKWEALGLPYGLDGVAPPSEETLARIRQQLADRGIPA 254 >gi|240950300|ref|ZP_04754575.1| pyruvate formate lyase-activating enzyme 1 [Actinobacillus minor NM305] gi|240295202|gb|EER46010.1| pyruvate formate lyase-activating enzyme 1 [Actinobacillus minor NM305] Length = 246 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 33/245 (13%), Positives = 84/245 (34%), Gaps = 48/245 (19%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + ++ E+++ +V+ + + G G Sbjct: 29 GCLMRCKYCHNRDTWDLDGGKE--ISVEDLMKEVVTYKHFMKATGGGVTASGGEAVLQME 86 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 + + E + D+ G + P + + E + Sbjct: 87 FVRDWFRACKAEG----------IDTCLDTNGF----------VRHYSPLVDEMLEVTDL 126 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 +L + L +++++ L+ ++ K +D R+ L+ R YV++ G D Sbjct: 127 VL-LDLKQLNDEIHQDLIGVSNK----RTLDFARYLQKLNK--RTWIRYVVVPGYTDDDD 179 Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIKR 343 A L + ++G+ K+ L+P++ ++ ++ + I+ Sbjct: 180 SAHRLGQFIQGMENIEKVELLPYHRLGAHKWETLGYKYELEGVLPPPKEKLEHLKGIIES 239 Query: 344 SGYSS 348 G++ Sbjct: 240 YGHAV 244 >gi|119774634|ref|YP_927374.1| pyruvate formate lyase-activating enzyme 1 [Shewanella amazonensis SB2B] gi|119767134|gb|ABL99704.1| (Formate-C-acetyltransferase)-activating enzyme [Shewanella amazonensis SB2B] Length = 246 Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 30/246 (12%), Positives = 72/246 (29%), Gaps = 48/246 (19%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + + +E++ Q+L R L G G Sbjct: 29 GCLMRCQYCHNRDTWDLDGGKE--MQVDELMSQILSYRPFLDASGGGVTASGGEAILQAE 86 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 ++++ E + D+ G + P I + + + Sbjct: 87 FVADLFKACRAEG----------IHTCLDTNGF----------VRKYTPAIDVLLDNTDL 126 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 +L + + + + L ++ L+ Y + + YV++ G + Sbjct: 127 VL-LDIKHIDDAKHQDLTKVSNHRTLQ-----FAEYLAKRDQ-KTWIRYVVVAGFTEDVE 179 Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIKR 343 A L + + K+ L+P++ ++ + R Sbjct: 180 SAEKLADFIAPMGNVEKVELLPYHELGKHKWEAMGEDYPLKGVHPPTADTMEAIKAVFTR 239 Query: 344 SGYSSP 349 G ++ Sbjct: 240 RGLTAT 245 >gi|303233472|ref|ZP_07320135.1| radical SAM domain protein [Finegoldia magna BVS033A4] gi|302495372|gb|EFL55115.1| radical SAM domain protein [Finegoldia magna BVS033A4] Length = 440 Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 47/276 (17%), Positives = 88/276 (31%), Gaps = 39/276 (14%) Query: 47 IRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETV 106 I + D S+ + + + D K SC K+ +IE Sbjct: 26 ISSIDEIEDKSK-------YKYFLRRTDFRDIKKSCSFKIKYPF----------SDIELT 68 Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166 + + ++ + C+L C +C + T Q + + + Sbjct: 69 NMYKNRVNSITLVLTENCNLRCKYC-----GYMPKYT-----NQNYKLKDMSKTV-AIKS 117 Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226 I+ ++ S + +I G GEPL D +K+ + + I + Sbjct: 118 IDFIMNSSNESETCHIGFYG-GEPLIKIDLIKECIDYINSKYPFRRPTYNIVTNAVLLDK 176 Query: 227 NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR---RIT 283 NIA E + ISL + + V N + E ++ + +T Sbjct: 177 NIAEFLMENNFKIIISLDGPTQEFNKYRVLPNDECSFEKAFKNIKNLYYMDPKYFRENVT 236 Query: 284 FEYVMLKGI-NDSPRDALNLIKILKGIPAKINLIPF 318 + VM G N+ NL K + +N+I Sbjct: 237 YNVVMYNGPSNELFEVMDNLWK------SGVNMIEL 266 >gi|260583914|ref|ZP_05851662.1| pyruvate formate-lyase 1-activating enzyme [Granulicatella elegans ATCC 700633] gi|260158540|gb|EEW93608.1| pyruvate formate-lyase 1-activating enzyme [Granulicatella elegans ATCC 700633] Length = 253 Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 36/244 (14%), Positives = 78/244 (31%), Gaps = 55/244 (22%) Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC + C FC+ T + +T++E+L + L R+ G G Sbjct: 31 GCRMRCEFCHNPDTWNIGGGKKITSQELLEEALRYRAFWGKKGG---------------- 74 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEE 234 V + GEPL D + + TL + G P ++ E Sbjct: 75 ---VTVSGGEPLLQVDFLIDFFKRC---KAMGI---HTTLDSCGMPFTYDEPFFSKFEEL 125 Query: 235 IGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 + + + + + ++ L K L+ Y + + +V++ Sbjct: 126 LEYTDLILLDIKHIDDEQHKKLTAWTNKNILQ-----LAEYLSEK-GQPVWIRHVLVPER 179 Query: 293 NDSPRDALNLIKILKGIP--AKINLIPFNP-------WPGCEYL-----CSDQKDIVTFS 338 +D L + + G+ K ++P++ G Y ++ + + Sbjct: 180 SDYDEYLERLSEFVAGLKNVLKFEVLPYHRLGVYKWKNLGIPYKLEHIEPPTKERVANAN 239 Query: 339 ECIK 342 ++ Sbjct: 240 RILR 243 >gi|261339237|ref|ZP_05967095.1| hypothetical protein ENTCAN_05472 [Enterobacter cancerogenus ATCC 35316] gi|288319093|gb|EFC58031.1| pyruvate formate-lyase 1-activating enzyme [Enterobacter cancerogenus ATCC 35316] Length = 246 Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 34/249 (13%), Positives = 84/249 (33%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T E+++ +V+ R + G G Sbjct: 29 GCLMRCLYCHNRDTWDTHGGKE--VTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAE 86 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 + + ++ G+ L T+GFV P I + E Sbjct: 87 FVRD---------------WFRACR----KEGI-----HTCLDTNGFVRRYDPVIDELLE 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L +++++ LV ++ ++ ++ G + YV++ G + Sbjct: 123 VTD-LVMLDLKQMNDEIHQNLVGVSNH----RTLEFAKYISGK--GIKTWIRYVVVPGWS 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 D A L + + + KI L+P++ ++ ++ + Sbjct: 176 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 235 Query: 340 CIKRSGYSS 348 +++ G+ Sbjct: 236 ILEQYGHKV 244 >gi|331002527|ref|ZP_08326045.1| hypothetical protein HMPREF0491_00907 [Lachnospiraceae oral taxon 107 str. F0167] gi|330410343|gb|EGG89777.1| hypothetical protein HMPREF0491_00907 [Lachnospiraceae oral taxon 107 str. F0167] Length = 463 Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 69/195 (35%), Gaps = 20/195 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L C +C+ E + R+L+ G ++ +V S Sbjct: 107 ALCLHIAHDCNLACKYCFAEE---------GEYHGR----RALMSYDVGKRALDFLVANS 153 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVG 232 R+ + G GEPL N+ VK + + K R T++T+G + I Sbjct: 154 GNRRNLEVDFFG-GEPLMNWQVVKDLVKYGRSLEEANNKKFRFTITTNGMLLNDEIMEFC 212 Query: 233 --EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 E V+L++ ND + K ++++ + + + Sbjct: 213 NQEMSNVVLSLDGRKEVND--AMRPTRGGKGSYDVIVPKFVKFAESRGTKDYYIRGTFTR 270 Query: 291 GINDSPRDALNLIKI 305 + +D L+ + Sbjct: 271 NNLEFSKDVLHFADL 285 >gi|241760150|ref|ZP_04758248.1| pyruvate formate-lyase 1-activating enzyme [Neisseria flavescens SK114] gi|241319604|gb|EER56034.1| pyruvate formate-lyase 1-activating enzyme [Neisseria flavescens SK114] Length = 289 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 38/245 (15%), Positives = 77/245 (31%), Gaps = 52/245 (21%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C +C+ N + L + M R Sbjct: 70 GCLMRCLYCH--------NRDTWD-----LHTEQAQELDVATVMKQVMTYRHYLRATGGG 116 Query: 183 VMMGMGEPLCNFDNVKK--------SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234 V GEPL ++ V+ + DS G + + + + + Sbjct: 117 VTATGGEPLLQYEFVRDWFTACREHDIHTCLDSNGYAL----------HYDSILDDLLDH 166 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 ++ + L + ++ +LV P + R+ + R+ YV++ G D Sbjct: 167 TN-LVMLDLKQIDPEIHKVLV----GIPNTKTLKFARYLAERNQPMRV--RYVVVPGYTD 219 Query: 295 SPRDALNLIKILKGIPAK--INLIPFNP-------WPGCEYL-----CSDQKDIVTFSEC 340 R A L + + + + L+P++ G EY ++ I+ E Sbjct: 220 DERSAHLLGEFIGDMDNVEMVELLPYHELGAHKWALCGDEYKLKGVHPPPKETILKIKEI 279 Query: 341 IKRSG 345 ++ G Sbjct: 280 LESYG 284 >gi|127513319|ref|YP_001094516.1| pyruvate formate lyase-activating enzyme 1 [Shewanella loihica PV-4] gi|126638614|gb|ABO24257.1| pyruvate formate-lyase activating enzyme [Shewanella loihica PV-4] Length = 246 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 39/244 (15%), Positives = 83/244 (34%), Gaps = 46/244 (18%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C +C+ +L + +L ++ P E G V S G I Sbjct: 29 GCLMRCQYCHNRD---TWDLHGGHEIEVDVLMEQIISYRPFLESSGGGVTASGGEAILQA 85 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGEEIGVM 238 +L A + G+ L T+GFV P I + + ++ Sbjct: 86 EF-------------VAALFKACKAQGI-----HTCLDTNGFVRKYTPVIDELLDNTDLV 127 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 L + + + +D L ++ L+ Y +++ YV++ G D Sbjct: 128 L-LDIKHIDDDQHIALTHVSNHRTLQ-----FAQYLQKR-QQKVWIRYVVVGGYTDDIAS 180 Query: 299 ALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIKRS 344 A L + +K + K+ L+P++ ++ ++ + + + Sbjct: 181 AKGLAEFIKPMTNVEKVELLPYHELGKHKWEAMGEEYTLKDISPPSRETMEQIKQVFVEA 240 Query: 345 GYSS 348 G ++ Sbjct: 241 GITA 244 >gi|294056359|ref|YP_003550017.1| Radical SAM domain protein [Coraliomargarita akajimensis DSM 45221] gi|293615692|gb|ADE55847.1| Radical SAM domain protein [Coraliomargarita akajimensis DSM 45221] Length = 428 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 33/238 (13%), Positives = 77/238 (32%), Gaps = 50/238 (21%) Query: 124 CSLTCSFCY-------TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176 C+++C+FC + N+ P + Sbjct: 34 CNVSCNFCNRKFDCVNESRPGVTSNIMT-----------------PKQALEYTKKVLGKS 76 Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS--GFVPNIARVGEE 234 KIS + + G G+P N + ++ + + ++++ G +P + R+ Sbjct: 77 EKISVVGIAGPGDPFANPEETMETFELVRQEY----PNTMLCVASNGLGILPYVDRLAAL 132 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYP------------LEMLIDACRHYPGLSNARRI 282 + I+++ + D+ + R ++ ++A R ++ + Sbjct: 133 KVSHVTITVNGIDPDVVAEVYAWARADKKVYRGQAMGEMIVKRQLEAIRAI--RAHGIMV 190 Query: 283 TFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEYLC---SDQKDIVT 336 +++ G+ND + + K +N IP P + DQK I Sbjct: 191 KINSIIIPGVNDH--HIPEISNMAKEHGCEMMNCIPMIPVENTPFESLGEPDQKMIAR 246 >gi|331651920|ref|ZP_08352939.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli M718] gi|331050198|gb|EGI22256.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli M718] Length = 255 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 38/249 (15%), Positives = 84/249 (33%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T E+++ +V+ R + G G Sbjct: 38 GCLMRCLYCHNRDTWDTHGGKE--VTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAE 95 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 + + ++ G+ L T+GFV P I + E Sbjct: 96 FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLE 131 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L +++D+ LV ++ LE Y N ++ YV++ G + Sbjct: 132 VTD-LVMLDLKQMNDDIHQNLVGVSNHRTLE-----FAKYLANKN-VKVWIRYVVVPGWS 184 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 D A L + + + KI L+P++ ++ ++ + Sbjct: 185 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 244 Query: 340 CIKRSGYSS 348 +++ G+ Sbjct: 245 ILEQYGHKV 253 >gi|119356571|ref|YP_911215.1| nitrogenase cofactor biosynthesis protein NifB [Chlorobium phaeobacteroides DSM 266] gi|119353920|gb|ABL64791.1| nitrogenase cofactor biosynthesis protein NifB [Chlorobium phaeobacteroides DSM 266] Length = 423 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 32/236 (13%), Positives = 80/236 (33%), Gaps = 40/236 (16%) Query: 124 CSLTCSFCYTG--TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 C++ C++C R +IL P ++ I+ Sbjct: 30 CNIQCNYCNRKFDCMNENRPGVTSKILS------------PLQAMHYLEQAIALTPSIAV 77 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVML 239 + + G G+P N D ++L + + + ++T+G +P I + E + Sbjct: 78 VGIAGPGDPFANPDETMETLRLVRAKY----PEMLLCVATNGLDVLPYINELAELKVSHV 133 Query: 240 AISLHAVSNDLRNILVPINRKYP------------LEMLIDACRHYPGLSNARRITFEYV 287 I+++A+ ++ + + R + ++A + + Sbjct: 134 TITINAIDPEIGSEIYAWVRYNKKMYRDVEAAELLINKQLEALKKLKEA--GVTAKVNSI 191 Query: 288 MLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEYL---CSDQKDIVTFSE 339 ++ GIND+ + + + + G+ A I N +P+ + + + Sbjct: 192 IIPGINDT--HVIEVARKVAGLGADILNCMPYYSTTETVFENIDEPSPEVVSEIQN 245 >gi|323698700|ref|ZP_08110612.1| nitrogenase cofactor biosynthesis protein NifB [Desulfovibrio sp. ND132] gi|323458632|gb|EGB14497.1| nitrogenase cofactor biosynthesis protein NifB [Desulfovibrio desulfuricans ND132] Length = 422 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 59/181 (32%), Gaps = 25/181 (13%) Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG---LSFSKRRIT 218 P + +I+ + G G+P N +++ + + S + Sbjct: 58 PFQAAEYMEKVLEKEPRITVAGIAGPGDPFANPAETLETMRLLNAKHPELIFCLSTNGM- 116 Query: 219 LSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYP------------LEML 266 G +P + + E + I++ AV + + + L+ Sbjct: 117 ----GILPYLDDIAELGVSHVTITISAVDPAIGAQIYAWVKDGNVVYHGEKGAEILLDRQ 172 Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCE 325 + A + + +++ GIND + + K+ + A I N+IP P Sbjct: 173 LKAIKGLKER--GITVKINSIVIPGINDH--HLVEVAKVCASLGADIQNMIPLKPTADTP 228 Query: 326 Y 326 + Sbjct: 229 F 229 >gi|170769309|ref|ZP_02903762.1| pyruvate formate-lyase 1-activating enzyme [Escherichia albertii TW07627] gi|170121961|gb|EDS90892.1| pyruvate formate-lyase 1-activating enzyme [Escherichia albertii TW07627] Length = 265 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 36/249 (14%), Positives = 84/249 (33%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T E+++ +V+ R + G G Sbjct: 48 GCLMRCLYCHNRDTWDTHGGKE--VTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAE 105 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 + + ++ G+ L T+GFV P I + E Sbjct: 106 FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLE 141 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L +++++ LV ++ LE Y + ++ YV++ G + Sbjct: 142 VTD-LVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAKYLANKD-VKVWIRYVVVPGWS 194 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 D A L + + + KI L+P++ ++ ++ + Sbjct: 195 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 254 Query: 340 CIKRSGYSS 348 +++ G+ Sbjct: 255 ILEQYGHKV 263 >gi|91793759|ref|YP_563410.1| pyruvate formate lyase-activating enzyme 1 [Shewanella denitrificans OS217] gi|91715761|gb|ABE55687.1| Pyruvate formate-lyase activating [Shewanella denitrificans OS217] Length = 245 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 34/250 (13%), Positives = 78/250 (31%), Gaps = 56/250 (22%) Query: 123 GCSLTCSFCYT----GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 GC + C +C+ R ++ E L ++ P + G V S G Sbjct: 28 GCLMRCQYCHNRDSWDLDGGTR-VSVAE------LMAKIIDYKPFLDASNGGVTASGGEA 80 Query: 179 ISNIVMMGMGEPLCNFDNVKKS-----LSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233 I + + K+ + D+ G ++P I + + Sbjct: 81 ILQAEFVA---------ELFKACKDNHIHTCLDTNGF----------VRKYIPIIDELLD 121 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++L + + + +D L ++ + LE Y ++ YV++ G Sbjct: 122 NTDLVL-LDIKQMFDDKHIALTKVSNQRTLE-----FAQYLAKR-GQKTWIRYVVIDGFT 174 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSE 339 A+ L +K + K+ L+P++ ++ ++ + Sbjct: 175 ADEASAIALADFIKPMTNVEKVELLPYHQLGAHKWQAFGESYSLSHVSPPSKETMERICG 234 Query: 340 CIKRSGYSSP 349 G ++ Sbjct: 235 VFNARGINAS 244 >gi|167629098|ref|YP_001679597.1| radical sam protein, putative [Heliobacterium modesticaldum Ice1] gi|167591838|gb|ABZ83586.1| radical sam protein, putative [Heliobacterium modesticaldum Ice1] Length = 470 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 40/217 (18%), Positives = 73/217 (33%), Gaps = 25/217 (11%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L C +C+ GT + RSL+ G + ++ ++ S Sbjct: 111 ALCLHVAHDCNLRCGYCFAGTGPFGGD-------------RSLMPVETGKQAVDFLLAHS 157 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSL---SIASDSMGLSFSKRRITLSTSGFVPNIARV 231 GR+ I G GEPL N D VK+ + + G T + Sbjct: 158 QGRRHVEIDFFG-GEPLLNVDVVKELVAYAKRRAAEEGKVLKLTLTTNGLLLDEETGRYL 216 Query: 232 GEE-IGVMLAISLHAVSNDLRNILVPINR-KYPLEMLIDACRHYPGLSNARRITFEYVML 289 EE + V+L++ ++ + + P + + + Sbjct: 217 NEEGLSVVLSLDGRR---EVHDRMRPYADGSGSYDDVAANLLAFVQSRGGEDYYVRGTFT 273 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 D D L++ + G I++ P P +Y Sbjct: 274 GHNPDFAADVLHIHDL--GFR-HISVEPVVAPPDVDY 307 >gi|197304077|ref|ZP_03169102.1| hypothetical protein RUMLAC_02814 [Ruminococcus lactaris ATCC 29176] gi|197296849|gb|EDY31424.1| hypothetical protein RUMLAC_02814 [Ruminococcus lactaris ATCC 29176] Length = 249 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 33/245 (13%), Positives = 77/245 (31%), Gaps = 49/245 (20%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC+ + + S +K I Sbjct: 30 GCPMRCQFCHNPD---------------TWKMQDGEERTTDELLKTALRYRSYWKKEGGI 74 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEEIGV 237 + G GEPL D + A + T G V P +++ E + Sbjct: 75 TVSG-GEPLMQMDFMIDLFKKAKAE------GVHTNIDTCGAVFTREEPFFSKLEELMKY 127 Query: 238 --MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 ML + + + ++ IL + K +++ R+ + I +V++ +D Sbjct: 128 TDMLMLDIKHIDDEQHKILTGHSNKN----ILEFARYLSDIKK--PIWIRHVLVPERSDY 181 Query: 296 PRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECI 341 L ++ + K+ ++P++ ++ ++ + + + Sbjct: 182 DEYLERLHDFIETLDNVEKVEVLPYHTLGEYKWKELGYDYPLAGIDPPTKERVENANRIL 241 Query: 342 KRSGY 346 + + Y Sbjct: 242 ETAKY 246 >gi|317491449|ref|ZP_07949885.1| pyruvate formate-lyase 1-activating enzyme [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920996|gb|EFV42319.1| pyruvate formate-lyase 1-activating enzyme [Enterobacteriaceae bacterium 9_2_54FAA] Length = 246 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 38/249 (15%), Positives = 79/249 (31%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T E+++ V+ R + G G Sbjct: 29 GCLMRCLYCHNRDTWDTHGGTE--ITVEDLMKDVVTYRHFMNASGGGVTASGGEAILQAE 86 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 + + ++ G+ L T+GFV P I + + Sbjct: 87 FVRD---------------WFRACK----EEGI-----HTCLDTNGFVRRYDPVIDELLD 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L +++D+ LV ++ LE Y N + YV++ G + Sbjct: 123 VTD-LVMLDLKQMNDDIHQNLVGVSNHRTLE-----FARYLAKRNQ-KTWIRYVVVPGWS 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 D A L K + KI L+P++ ++ + + Sbjct: 176 DDDASAHLLGDFTKDMTNVEKIELLPYHELGKHKWEAMGEEYKLGGVKPPSHETMERVKN 235 Query: 340 CIKRSGYSS 348 ++ G+ Sbjct: 236 ILESYGHKV 244 >gi|197335857|ref|YP_002156408.1| pyruvate formate-lyase 1-activating enzyme [Vibrio fischeri MJ11] gi|197317347|gb|ACH66794.1| pyruvate formate-lyase 1-activating enzyme [Vibrio fischeri MJ11] Length = 245 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 35/252 (13%), Positives = 83/252 (32%), Gaps = 62/252 (24%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T E++ + R + G G Sbjct: 28 GCLMRCMYCHNRDTWDTHDGKE--VTVAELIEEAKSYRHFMKASGGGITCSG-------- 77 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN----IARVGE 233 GE + + V+ A+ + G+ L T+G++ I V E Sbjct: 78 ----------GEAMLQPEFVRDFFR-AAQAEGI-----HTCLDTNGYIRKHTDVIDEVLE 121 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L + +D+ + ++ ++D R+ + ++ YV++ G Sbjct: 122 ASD-LVMLDLKQMKDDIHKEFIGVSNT----RVLDFARYLHKI--GQKTWIRYVIVPGYT 174 Query: 294 DSPRDALNLIKILKGIPAKIN-----LIPFNPWPGCEYL------------CSDQKDIVT 336 D A L +K + +N L+P++ ++ ++ + Sbjct: 175 DDEESAHLLGDFIKDM---VNIEKIELLPYHKLGAHKWEALGHDYPLEGVNPPSKETMEK 231 Query: 337 FSECIKRSGYSS 348 E + + + Sbjct: 232 MVEILSQYHNNV 243 >gi|237807654|ref|YP_002892094.1| pyruvate formate-lyase activating enzyme [Tolumonas auensis DSM 9187] gi|237499915|gb|ACQ92508.1| pyruvate formate-lyase activating enzyme [Tolumonas auensis DSM 9187] Length = 248 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 30/247 (12%), Positives = 76/247 (30%), Gaps = 50/247 (20%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T ++++ +L R + G G Sbjct: 29 GCLMRCKYCHNRDTWDTEGGKE--VTVDDLMKDLLAYRHFIKASGGGVTASGGEATLQKE 86 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 ++ E + D+ G + + + ++ Sbjct: 87 FVTEWFKACKAEG----------IHTCLDTNGF----------IRHYDEALDALLDQTD- 125 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 ++ + + +++++ L ++ KY LE Y I YV++ G +D Sbjct: 126 LVMLDIKHMNDEIHIPLTHVSNKYCLE-----FARYLAKKGKT-IWIRYVVVPGWSDDDA 179 Query: 298 DALNLIKILKGIPA----KINLIPFNPWPGCEY------------LCSDQKDIVTFSECI 341 A L ++ KI ++P++ ++ ++ + E + Sbjct: 180 GAHALGAFIRDELGGKVEKIEMLPYHELGKHKWTAMGEKYELEGIHPPKKEVMEHLKEIL 239 Query: 342 KRSGYSS 348 G + Sbjct: 240 VSYGIKA 246 >gi|302343639|ref|YP_003808168.1| radical SAM domain protein [Desulfarculus baarsii DSM 2075] gi|301640252|gb|ADK85574.1| Radical SAM domain protein [Desulfarculus baarsii DSM 2075] Length = 423 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 72/177 (40%), Gaps = 16/177 (9%) Query: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG---EPLCNFDNVKKSLSIASDSMGLS 211 + + P E++ + + K +V G G EPL D + K++ + L Sbjct: 216 QERIKFTPSPEEVAEVALHHFRNKREALVSFGQGCEGEPLLQADLLSKAIRLIRLEEPLG 275 Query: 212 FSKRRITLSTSGFVP-NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 I L+T+G P + R+ + + +S++++ + R+ + + L ID+ Sbjct: 276 ----TINLNTNGSRPDQVGRLMTDGLSSIRVSVNSLIPE-RHAAYYRPKGWSLAQAIDSL 330 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF---NPWPGC 324 + + + + G+ D P + L ++++ K++LI + N P Sbjct: 331 K--AVKRAGGHASLNLLTMPGLTDRPEEMDALCQVIEQT--KLDLIQWRNINIDPEI 383 >gi|301154949|emb|CBW14412.1| pyruvate formate lyase activating enzyme 1 [Haemophilus parainfluenzae T3T1] Length = 246 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 39/246 (15%), Positives = 89/246 (36%), Gaps = 50/246 (20%) Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC + C +C+ T + R ++ EE++ +V+ R + G G + Sbjct: 29 GCLMRCKYCHNRDTWDLEGGREISVEELMKEVVSYRHFMNATGGGVTASGGEAVLQAEFV 88 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 + ++ + G++ L T+GFV + + +E+ + Sbjct: 89 RD---------------WFRACK----AEGIN-----TCLDTNGFVRHYDHIIDELLDVT 124 Query: 240 AISLHAV---SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 + L + ++ + L+ + K LE Y N R YV++ G DS Sbjct: 125 DLVLLDLKELNDQVHQNLIGVPNKRTLE-----FAKYLQKRNQ-RTWIRYVVVPGYTDSD 178 Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIK 342 D L + ++G+ K+ L+P++ ++ ++ + ++ Sbjct: 179 HDIHLLGQFIEGMTNIEKVELLPYHRLGAHKWKTLGFDYELEDVLPPTKESLEHIKNILE 238 Query: 343 RSGYSS 348 G++ Sbjct: 239 GYGHTV 244 >gi|261364596|ref|ZP_05977479.1| pyruvate formate-lyase 1-activating enzyme [Neisseria mucosa ATCC 25996] gi|288567181|gb|EFC88741.1| pyruvate formate-lyase 1-activating enzyme [Neisseria mucosa ATCC 25996] Length = 270 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 36/256 (14%), Positives = 79/256 (30%), Gaps = 74/256 (28%) Query: 123 GCSLTCSFCYTGTQKLVRN-----------LTAEEILLQVLLARSLLGDFPGCEDIEGMV 171 GC + C +C+ R+ +T E++ QV+ R L G G Sbjct: 51 GCLMRCLYCH------NRDTWDLHTEQAQEMTVPEVMKQVMSYRHYLRATGGGVTATGG- 103 Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKK--------SLSIASDSMGLSFSKRRITLSTSG 223 EPL ++ V+ + DS G + Sbjct: 104 -----------------EPLLQYEFVRDWFTACYEHDIHTCLDSNGYAL----------H 136 Query: 224 FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283 + + + + ++ + L + ++ +LV P + + R+ Sbjct: 137 YDSILDDLLDHTN-LVMLDLKQIDPEIHKVLV----GIPNTKTLKFAHYLAERKQPARV- 190 Query: 284 FEYVMLKGINDSPRDALNLIKILKGIPAK--INLIPFNPWPGCEY------------LCS 329 YV++ G D R A L + + + + L+P++ ++ Sbjct: 191 -RYVVVPGYTDDDRSAHLLGEFIADMDNIEMVELLPYHELGAHKWALCGDTYKLTGVHPP 249 Query: 330 DQKDIVTFSECIKRSG 345 ++ I+ ++ G Sbjct: 250 PKETILKIKSILESYG 265 >gi|149191035|ref|ZP_01869296.1| pyruvate formate lyase activating enzyme 1 [Vibrio shilonii AK1] gi|148835169|gb|EDL52145.1| pyruvate formate lyase activating enzyme 1 [Vibrio shilonii AK1] Length = 246 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 34/245 (13%), Positives = 82/245 (33%), Gaps = 56/245 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + ++ +E++ + R + G G Sbjct: 29 GCLMRCMYCHNRDTWDTHGGKE--VSVDELIAEAKSYRHFMNASGGGITCSG-------- 78 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN----IARVGE 233 GE + + V+ A+ + G+ L T+G++ I V + Sbjct: 79 ----------GEAMLQPEFVRDFFR-AAQAEGI-----HTCLDTNGYIRKHTDVIDEVLD 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 +++ H ++ + NR+ +D R+ + ++ YV++ G Sbjct: 123 ATDLVMLDIKHMKDEIHQDFIGVSNRR-----TLDFARYLHKI--GQKTWIRYVVVPGYT 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 D P A L + +K + K+ L+P++ ++ ++ + Sbjct: 176 DDPEAAHMLGEFIKDMDNIEKVELLPYHKLGAHKWEALGFEYPLEGTQPPTKEVMDNIQN 235 Query: 340 CIKRS 344 + + Sbjct: 236 ILLQY 240 >gi|242238235|ref|YP_002986416.1| radical SAM protein [Dickeya dadantii Ech703] gi|242130292|gb|ACS84594.1| Radical SAM domain protein [Dickeya dadantii Ech703] Length = 469 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 45/274 (16%), Positives = 88/274 (32%), Gaps = 37/274 (13%) Query: 36 SQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPAR 95 Q ++++ + + + L + F ++ I + I +R+ Sbjct: 46 QQAYEYL---CRNNIDNNENTP--LIQQLKERFFLLPDNIDERDI-----INNEIRYRKE 95 Query: 96 CIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR 155 + + + L +++ C+ C++C+ RN Q Sbjct: 96 HLDSGYLV--------NGLQLVLTN--DCNFKCTYCFAN----ERNNDQASSCAQKPQRM 141 Query: 156 SLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN---FDNVKKSLSIASDSMGLSF 212 + F E+I ++ + ++ I G GEPL N + V + G++ Sbjct: 142 TKEIAFLAVENIISVIKRNHNTHLT-IEFFG-GEPLLNWEIIEAVLDKYRS-GEDWGVNI 198 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 IT + S IA+ + GV +S N R + P E LI R Sbjct: 199 -HYMITTNGSLISEKIAKTLKTYGVHTVLSYDTPGNHHRL----TTKNTPAEELI--LRG 251 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 L ++ N DA L++ Sbjct: 252 LSNLKKHNNAVSINSVISHTNIDQFDADALLEFA 285 >gi|182417544|ref|ZP_02948871.1| pyruvate formate-lyase 1-activating enzyme [Clostridium butyricum 5521] gi|237665689|ref|ZP_04525677.1| pyruvate formate-lyase 1-activating enzyme [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378713|gb|EDT76240.1| pyruvate formate-lyase 1-activating enzyme [Clostridium butyricum 5521] gi|237658636|gb|EEP56188.1| pyruvate formate-lyase 1-activating enzyme [Clostridium butyricum E4 str. BoNT E BL5262] Length = 264 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 40/250 (16%), Positives = 89/250 (35%), Gaps = 57/250 (22%) Query: 123 GCSLTCSFCYTGT-----QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C FC+ R TA+E+L Q L + + Sbjct: 42 GCHMRCQFCHNPDTWDINGGETR--TADELLSQAL------------------RYKTYWK 81 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVG 232 K I + G GEPL D + + A +TL TSG P ++ Sbjct: 82 KGGGITVSG-GEPLLQIDFLIEFFKKAKSK------GVHVTLDTSGNPFTREEPFFSKFN 134 Query: 233 EEIGVM-LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291 E + V L + ++ ++ ++ + ++D + ++ + +V++ G Sbjct: 135 ELMKVTDLVMLDIKQIDEEKHKILTG---WSNSNILDMAKFLSEINK--PVWIRHVLVPG 189 Query: 292 INDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTF 337 +D+ + L + +K + ++ ++P++ ++ ++ I Sbjct: 190 GSDNDEQLIKLDEFIKTLKNVDRVEVLPYHSLGTFKWEELGIEYPLKDVEPPTKERIENA 249 Query: 338 SECIKRSGYS 347 + + S Y+ Sbjct: 250 KKLLHTSEYN 259 >gi|262038411|ref|ZP_06011785.1| pyruvate formate-lyase 1-activating enzyme [Leptotrichia goodfellowii F0264] gi|261747506|gb|EEY34971.1| pyruvate formate-lyase 1-activating enzyme [Leptotrichia goodfellowii F0264] Length = 241 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 33/244 (13%), Positives = 86/244 (35%), Gaps = 45/244 (18%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C +C+ N+ + E ++ ++ + + Sbjct: 27 GCPLRCLYCH--------NVDT-------WNVKDKKFMMTPEEVMKEILKVKGFIRTGGV 71 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLA 240 + G GEPL + + + + ++ + TSG++ + V + ++L Sbjct: 72 TVSG-GEPLLQPEFITELFKLCKEND------IHTAVDTSGYMFNNKVKEVLKWTDLVL- 123 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 + + ++ + L + LE ++ ++ ++ YV++ G +D D Sbjct: 124 LDIKHINPNKYKKLTSV----SLEHTLEFAKYLSEINK--NAWIRYVLVPGYSDDEEDLH 177 Query: 301 NLIKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKRSGY 346 K + +++++PF+ G ++ ++++ E K G Sbjct: 178 EWAKFVSQFKNVTRVDILPFHQMGGYKWKEVGKEYKLADVKPPAREEVKKVEEIFKSYGL 237 Query: 347 SSPI 350 + I Sbjct: 238 NVGI 241 >gi|154334708|ref|XP_001563601.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134060622|emb|CAM42171.1| conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 416 Score = 48.0 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 81/236 (34%), Gaps = 32/236 (13%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEE---ILLQ---VL--LARSLLGDFPGCEDIEGMVIPSV 175 C+ C FC+ +L N TA E ++ + V+ + S G + G+ ++ Sbjct: 72 CANNCVFCW----RLNSNPTAAEWKWMVDEPKEVVEGMISSHQALINGVRGMPGVTDEAL 127 Query: 176 GRKI--SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233 + + + +GEP+ + V + L + S ++ F I ++ Sbjct: 128 EEALAPRHCALSLVGEPIM-YPYVNEFLRLLHAK-----SMSSFLVNNGQFPDAIRKLAP 181 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 L +S+ A + IL E ++ + R F M+ G N Sbjct: 182 VTQ--LYLSVDAPNKKTMKILDRPVLPDYWERFNESVNSMREKKH--RTVFRLTMIDGFN 237 Query: 294 DSPRDALNLIKIL-KGIPAKI---NLIP-FNPWPGCEYL---CSDQKDIVTFSECI 341 P + ++ +G P I L P F+ + + F++ + Sbjct: 238 MEPENLPEYKELFDRGQPHFIEIKRLTPAFSGNHNTILRIKNVPSWEKMKAFAQQL 293 >gi|157146410|ref|YP_001453729.1| pyruvate formate lyase-activating enzyme 1 [Citrobacter koseri ATCC BAA-895] gi|157083615|gb|ABV13293.1| hypothetical protein CKO_02169 [Citrobacter koseri ATCC BAA-895] Length = 255 Score = 48.0 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 31/245 (12%), Positives = 80/245 (32%), Gaps = 48/245 (19%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T E+++ +V+ R + G G Sbjct: 38 GCLMRCLYCHNRDTWDTHGGKE--VTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAE 95 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 + + E S+ D+ G + P I + E Sbjct: 96 FVRDWFRACKKE----------SIHTCLDTNGF----------VRRYDPVIDELLEVTD- 134 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 ++ + L +++++ LV ++ ++ ++ + YV++ G +D Sbjct: 135 LVMLDLKQMNDEIHQNLVGVSNH----RTLEFAKYISAK--GIKTWIRYVVVPGWSDDDD 188 Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKR 343 A L + + + KI L+P++ ++ ++ + +++ Sbjct: 189 SAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGILEQ 248 Query: 344 SGYSS 348 G+ Sbjct: 249 YGHKV 253 >gi|315923970|ref|ZP_07920198.1| radical SAM domain protein [Pseudoramibacter alactolyticus ATCC 23263] gi|315622810|gb|EFV02763.1| radical SAM domain protein [Pseudoramibacter alactolyticus ATCC 23263] Length = 464 Score = 48.0 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 82/232 (35%), Gaps = 33/232 (14%) Query: 105 TVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC 164 VY ++C++ C+L C++C+ + R L+ G Sbjct: 81 MVYQNYNLIKSMCLNVAHDCNLRCAYCFASQGDFNGD-------------RDLMPLEVGK 127 Query: 165 EDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL---SIASDSMGLSFSKRRITLST 221 + + +V S R + G GEPL NF VK + F T++T Sbjct: 128 KAFDFLVAQSKNRHNLEVDFFG-GEPLMNFRVVKDLVAYGRSLEKEYNKRF---NFTMTT 183 Query: 222 SGFV--PNIARVGEEIGVMLAISL---HAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276 + + R ++ + +SL AV++ +R ++ +++I+ + L Sbjct: 184 NAVLLNDENMRWIDDNMNNVVLSLDGRKAVNDHMRK---TVSGGGSFDVIIENIKKMAAL 240 Query: 277 S--NARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 + + K D +D L K +G + +++ P Y Sbjct: 241 REASGKEYYVRGTYTKNNLDFGKDVEFLAK--QGFRS-VSVEPVVTDETKNY 289 >gi|301300126|ref|ZP_07206342.1| pyruvate formate-lyase 1-activating enzyme [Lactobacillus salivarius ACS-116-V-Col5a] gi|300215439|gb|ADJ79852.1| Pyruvate formate-lyase activating enzyme [Lactobacillus salivarius CECT 5713] gi|300852300|gb|EFK79968.1| pyruvate formate-lyase 1-activating enzyme [Lactobacillus salivarius ACS-116-V-Col5a] Length = 278 Score = 48.0 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 40/245 (16%), Positives = 83/245 (33%), Gaps = 56/245 (22%) Query: 123 GCSLTCSFCYTGTQKLVR---NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC + C FC+ R +T EE+L + L RS GD +G + S G + Sbjct: 43 GCHMRCKFCHNPDTWKTRVGSQMTTEEVLNKALPYRSFWGD-------KGGITLSGGEIL 95 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEE 234 I +L + S L T G P ++ E Sbjct: 96 LQIDF---------------ALELFKMCKEEGISTC---LDTCGQPFTRREPWFSKFNEL 137 Query: 235 IGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 + L + + +++D L +P + ++D C + + + + +V++ GI Sbjct: 138 MDYTDILLVDIKHINSDEHKRLT----GFPNDNILDMCEYLSSI--GKPVWIRHVLIPGI 191 Query: 293 NDSPRDALNLIKILKGIPAKI---NLIPFNPWPGCEYL------------CSDQKDIVTF 337 D+ L + +K + ++P++ +Y + + Sbjct: 192 TDNDEYLKQLGEYVKENLHNVEKFEVLPYHTMGVHKYQEMGIRYRLEGVEPPTPERVKNA 251 Query: 338 SECIK 342 + ++ Sbjct: 252 EKLLE 256 >gi|227892250|ref|ZP_04010055.1| pyruvate formate-lyase activating enzyme [Lactobacillus salivarius ATCC 11741] gi|227865972|gb|EEJ73393.1| pyruvate formate-lyase activating enzyme [Lactobacillus salivarius ATCC 11741] Length = 278 Score = 48.0 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 40/245 (16%), Positives = 83/245 (33%), Gaps = 56/245 (22%) Query: 123 GCSLTCSFCYTGTQKLVR---NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC + C FC+ R +T EE+L + L RS GD +G + S G + Sbjct: 43 GCHMRCKFCHNPDTWKTRVGSQMTTEEVLNKALPYRSFWGD-------KGGITLSGGEIL 95 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEE 234 I +L + S L T G P ++ E Sbjct: 96 LQIDF---------------ALELFKMCKEEGISTC---LDTCGQPFTRREPWFSKFNEL 137 Query: 235 IGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 + L + + +++D L +P + ++D C + + + + +V++ GI Sbjct: 138 MDYTDILLVDIKHINSDEHKRLT----GFPNDNILDMCEYLSSI--GKPVWIRHVLIPGI 191 Query: 293 NDSPRDALNLIKILKGIPAKI---NLIPFNPWPGCEYL------------CSDQKDIVTF 337 D+ L + +K + ++P++ +Y + + Sbjct: 192 TDNDEYLKQLGEYVKENLHNVEKFEVLPYHTMGVHKYQEMGIRYRLEGVEPPTPERVKNA 251 Query: 338 SECIK 342 + ++ Sbjct: 252 EKLLE 256 >gi|90962847|ref|YP_536762.1| pyruvate formate-lyase activating enzyme [Lactobacillus salivarius UCC118] gi|90822041|gb|ABE00679.1| Pyruvate formate-lyase activating enzyme [Lactobacillus salivarius UCC118] Length = 278 Score = 48.0 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 40/245 (16%), Positives = 83/245 (33%), Gaps = 56/245 (22%) Query: 123 GCSLTCSFCYTGTQKLVR---NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC + C FC+ R +T EE+L + L RS GD +G + S G + Sbjct: 43 GCHMRCKFCHNPDTWKTRVGSQMTTEEVLNKALPYRSFWGD-------KGGITLSGGEIL 95 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEE 234 I +L + S L T G P ++ E Sbjct: 96 LQIDF---------------ALELFKMCKEEGISTC---LDTCGQPFTRREPWFSKFNEL 137 Query: 235 IGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 + L + + +++D L +P + ++D C + + + + +V++ GI Sbjct: 138 MDYTDILLVDIKHINSDEHKRLT----GFPNDNILDMCEYLSSI--GKPVWIRHVLIPGI 191 Query: 293 NDSPRDALNLIKILKGIPAKI---NLIPFNPWPGCEYL------------CSDQKDIVTF 337 D+ L + +K + ++P++ +Y + + Sbjct: 192 TDNDEYLKQLGEYVKENLHNVEKFEVLPYHTMGVHKYQEMGIRYRLEGVEPPTPERVKNA 251 Query: 338 SECIK 342 + ++ Sbjct: 252 EKLLE 256 >gi|212634770|ref|YP_002311295.1| pyruvate formate lyase-activating enzyme 1 [Shewanella piezotolerans WP3] gi|212556254|gb|ACJ28708.1| Pyruvate formate-lyase 1 activating enzyme [Shewanella piezotolerans WP3] Length = 246 Score = 48.0 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 36/249 (14%), Positives = 84/249 (33%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFCYTGT-----QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C+ + +E++ Q++ R P E G V S G Sbjct: 29 GCLMRCQYCHNRDTWDLHGGKE--IKVDELMSQIISYR------PFLEASGGGVTASGGE 80 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 + + + K+ G+ L T+GFV P I + + Sbjct: 81 AVLQPEFVA---------ELFKACK----KEGI-----HTCLDTNGFVRKYTPIIDELLD 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++L + + ++++ L ++ + + H + ++ YV++ G Sbjct: 123 NTDLVL-LDIKQINDEKHIDLTKVSN----QRTLQFAEHLHKRN--QKTWIRYVVVGGFT 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSE 339 D A L + +K + K+ L+P++ ++ + + + Sbjct: 176 DDMPSAQALAEFIKPMTNVEKVELLPYHELGKHKWEAMGEEYELNQISPPTTETMEKIKQ 235 Query: 340 CIKRSGYSS 348 G ++ Sbjct: 236 VFIDMGINA 244 >gi|116749201|ref|YP_845888.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116698265|gb|ABK17453.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB] Length = 443 Score = 48.0 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 84/221 (38%), Gaps = 27/221 (12%) Query: 110 EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169 R + + C+ C C + + + + + P E+I G Sbjct: 183 FMERWEAPLPTSPVCNARCLGCISLQDRKD-----------LRATQDRITFVPTPEEICG 231 Query: 170 MVIPSVGRKISNIVMMGMG---EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226 + +P + + +V G G EPL D + +++ + + + I L+T+G +P Sbjct: 232 VAVPHLEQAPRPVVSFGQGCEGEPLLQADTLAEAIRMMRA----ATPRGTINLNTNGSLP 287 Query: 227 N-IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFE 285 + I + + ISL++ + + Y + + + S R ++ Sbjct: 288 HMIPELCAAGLDSIRISLNSARPAYYHAYF-NPQGYRFDDVRQSIL--AAKSAGRFVSIN 344 Query: 286 YVMLKGINDSPRDALNLIKILKGIPAKINLIP---FNPWPG 323 Y +L G +D P + L ++++ +I+LI N P Sbjct: 345 YFILPGFSDQPDELDALCRLIEET--RIDLIQMRNLNIDPE 383 >gi|297570416|ref|YP_003691760.1| nitrogenase cofactor biosynthesis protein NifB [Desulfurivibrio alkaliphilus AHT2] gi|296926331|gb|ADH87141.1| nitrogenase cofactor biosynthesis protein NifB [Desulfurivibrio alkaliphilus AHT2] Length = 424 Score = 48.0 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 63/164 (38%), Gaps = 22/164 (13%) Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221 P + + +IS + + G G+P N + ++L + ++ S + + LS+ Sbjct: 60 PDQALVYVDRVLEREPRISVVGIAGPGDPFANAEATMETLRLINEKY----SDKLLCLSS 115 Query: 222 SG--FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYP------------LEMLI 267 +G P+I + + I+++AV ++ + R L + Sbjct: 116 NGMNIGPHIPELAALNVSHVTITVNAVDPEIGARIYGWVRDGKVLYRGRQAAELLLRRQL 175 Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311 +A + + +M+ G+ND + + + ++ + A Sbjct: 176 EAIGRL--KAAGITVKINCIMIPGVND--QHIPAVAEAMRDLGA 215 >gi|331646167|ref|ZP_08347270.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli M605] gi|331044919|gb|EGI17046.1| pyruvate formate-lyase 1-activating enzyme [Escherichia coli M605] Length = 255 Score = 48.0 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 36/249 (14%), Positives = 84/249 (33%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T E+++ +++ R + G G Sbjct: 38 GCLMRCLYCHNRDTWDTHGGKE--VTVEDLMKELVTYRHFMNASGGGVTASGGEAILQAE 95 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 + + ++ G+ L T+GFV P I + E Sbjct: 96 FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLE 131 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L +++++ LV ++ LE Y N ++ YV++ G + Sbjct: 132 VTD-LVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAKYLANKN-VKVWIRYVVVPGWS 184 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 D A L + + + KI L+P++ ++ ++ + Sbjct: 185 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 244 Query: 340 CIKRSGYSS 348 +++ G+ Sbjct: 245 ILEQYGHKV 253 >gi|269139528|ref|YP_003296229.1| pyruvate-formate lyase-activating enzyme [Edwardsiella tarda EIB202] gi|267985189|gb|ACY85018.1| pyruvate-formate lyase-activating enzyme [Edwardsiella tarda EIB202] gi|304559417|gb|ADM42081.1| Pyruvate formate-lyase activating enzyme [Edwardsiella tarda FL6-60] Length = 246 Score = 48.0 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 77/245 (31%), Gaps = 48/245 (19%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T EE++ + R + G G Sbjct: 29 GCLMRCLYCHNRDTWDTHGGKE--VTVEELMKDTVTYRHFMNASGGGVTASGGEAMLQAE 86 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 + + E + D+ G + P I + + Sbjct: 87 FVRDWFRACQAEG----------IHTCLDTNGF----------VRRYDPVIDELLDVTD- 125 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 ++ + L +++D+ LV ++ ++ CR Y N + YV++ G +D Sbjct: 126 LVMLDLKQMNDDIHKNLVGVSNH----RTLEFCR-YLAKRNQ-KTWIRYVVVPGWSDDEA 179 Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKR 343 A L + K + KI L+P++ ++ ++ + + Sbjct: 180 SARLLGEFTKDMKNIEKIELLPYHELGKHKWEAMGETYQLGDVKPPSREIMERVKGILTE 239 Query: 344 SGYSS 348 G+ Sbjct: 240 YGHKV 244 >gi|281423385|ref|ZP_06254298.1| pyruvate formate-lyase 1-activating enzyme [Prevotella oris F0302] gi|281402721|gb|EFB33552.1| pyruvate formate-lyase 1-activating enzyme [Prevotella oris F0302] Length = 261 Score = 48.0 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 44/241 (18%), Positives = 83/241 (34%), Gaps = 47/241 (19%) Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC + C FC+ T Q R +TA+E+L Q RS G+ G Sbjct: 45 GCPMRCLFCHNPDTWKQDKTRPMTADELLNQAEKYRSYWGEKGG---------------- 88 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASD---SMGLSFSKRRITLSTSGFVPNIARVGEEIG 236 I + G GE L D + + A + L S + T + F R+ + Sbjct: 89 --ITVSG-GEALLQIDFLIELFEKAHARSINTCLDTSAQPFTRKDTWFTK-FERLMKATD 144 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 + + + + D L + L+ C Y + + +V++ + D+ Sbjct: 145 -TVLLDIKHIREDEHCKLTKFSNSNILD-----CARYLS-DIQKPVWIRHVLIPKLTDND 197 Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIK 342 L LK + +I+++P++ +Y Q+ I + ++ Sbjct: 198 AYLHELAAFLKTLHNIERIDILPYHTLGTYKYEELHIDYPLKGIEPPTQERIDNANRIME 257 Query: 343 R 343 Sbjct: 258 S 258 >gi|227499463|ref|ZP_03929574.1| radical SAM domain protein [Anaerococcus tetradius ATCC 35098] gi|227218525|gb|EEI83768.1| radical SAM domain protein [Anaerococcus tetradius ATCC 35098] Length = 460 Score = 48.0 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 71/196 (36%), Gaps = 22/196 (11%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC++ C+L+C +C+ K + I+ I+ ++ S Sbjct: 96 ALCLNVAHTCNLSCEYCFAKGGKYSG---PDAIMS----------KEIARSAIDFLLENS 142 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIARV 231 +I G GEPL NFD VK +++ A TL+T+G + I + Sbjct: 143 GSHYNLDIDFFG-GEPLLNFDVVKDTVAYAKSKEEEYKKHFNFTLTTNGLLLDDEVIDYL 201 Query: 232 GEEIG-VMLAISLHAV-SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 E + V+L++ + R L N K + ++ +++ + Sbjct: 202 NENMKNVVLSLDGRKEKHDQFRKTL---NGKGSYDAVVPKFQNFVKKRGDKEYYMRGTFT 258 Query: 290 KGINDSPRDALNLIKI 305 D +D N I + Sbjct: 259 ANNLDFTKDLQNYIDL 274 >gi|308050261|ref|YP_003913827.1| pyruvate formate-lyase activating enzyme [Ferrimonas balearica DSM 9799] gi|307632451|gb|ADN76753.1| pyruvate formate-lyase activating enzyme [Ferrimonas balearica DSM 9799] Length = 246 Score = 47.6 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 34/249 (13%), Positives = 78/249 (31%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFCYTGT-----QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C+ +T +++ Q++ R G Sbjct: 29 GCLMRCQYCHNRDTWDLEGGKE--VTVPQLMEQLVSYRHFFEASGGG------------- 73 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 V GE + D VK + L T+G + P + + + Sbjct: 74 -----VTASGGEAVLQMDFVK---EWFTACKAEGI---HTCLDTNGLIRKYTPVVDEMLD 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + + + + + LV ++ K PLE + ++ YV++ G Sbjct: 123 VTD-LVMLDIKQMDDSIHQNLVGVSNKRPLEFAQHLAKR------GQKTWIRYVIVPGFT 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 D A L + L + K+ ++P++ ++ ++ + Sbjct: 176 DDDASAEKLAEFLAPMKNVEKVEMLPYHELGKHKWEALGETYPLDGVKPPPKETMERLKA 235 Query: 340 CIKRSGYSS 348 G ++ Sbjct: 236 IFVAHGLNA 244 >gi|209544748|ref|YP_002276977.1| Radical SAM domain-containing protein [Gluconacetobacter diazotrophicus PAl 5] gi|209532425|gb|ACI52362.1| Radical SAM domain protein [Gluconacetobacter diazotrophicus PAl 5] Length = 371 Score = 47.6 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 54/143 (37%), Gaps = 16/143 (11%) Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 R+ + L + L A + +R ++P ++ +DA + ++ Y+ Sbjct: 223 FQRLRDAGADTLGMHLEAATQRVRERIMPGKATVSVDRYMDAFASAVPVFGRGQVN-TYI 281 Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFS----EC 340 + G+ D+ + L L L + ++PF P G + + + + Sbjct: 282 L-AGLGDTAEEILALAGRLIALGVYPFVVPFVPISGTPLEDHAPPSAEFMASLFTPLGKM 340 Query: 341 IKRSGYSSPIRTPRGLDILAACG 363 ++ +G +S DI A CG Sbjct: 341 LRTAGMTS-------SDIRAGCG 356 >gi|254478058|ref|ZP_05091442.1| radical SAM domain protein [Carboxydibrachium pacificum DSM 12653] gi|214036062|gb|EEB76752.1| radical SAM domain protein [Carboxydibrachium pacificum DSM 12653] Length = 259 Score = 47.6 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 54/140 (38%), Gaps = 18/140 (12%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 +C++ C+L C +C+ T R L+ G + I+ ++ S Sbjct: 95 AMCLNVAHDCNLRCKYCFASTGDFKG-------------GRKLMDFETGRKAIDFLIKSS 141 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIARV 231 R+ I G GEPL NF+ VK+ + + + T++T+ + I Sbjct: 142 GKRRNIEIDFFG-GEPLLNFEVVKQLVEYGKQKAKENKKNIKFTITTNAVLLDDEKIEYF 200 Query: 232 GEEI-GVMLAISLHAVSNDL 250 E V+L++ ND Sbjct: 201 NENFSNVVLSLDGRKEVNDQ 220 >gi|331002131|ref|ZP_08325650.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae oral taxon 107 str. F0167] gi|330411225|gb|EGG90641.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae oral taxon 107 str. F0167] Length = 242 Score = 47.6 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 40/265 (15%), Positives = 86/265 (32%), Gaps = 48/265 (18%) Query: 98 GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157 G ET + + V Q GC + C FC+ + E QVL A+ + Sbjct: 5 GNIHSFETFGLVDGPGVRFVVFVQ-GCPMRCQFCHNPDT-----WSTNE--NQVLTAQEV 56 Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217 + + + I + G GEPL D V + I ++ Sbjct: 57 F--------EKAIRYRPYWKDHGGITVSG-GEPLLQIDFVTELFKICKEN------GVNT 101 Query: 218 TLSTSGFV-----PNIARVGEEIGVM-LAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 L T+G + + + L + N+ R+ ++ + + + Sbjct: 102 CLDTAGGPFRKDTKFLKKFKTLMEYTDLIMLDIKEINNKRHEIITGMKNDHILEMAKTMD 161 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFN-------PWP 322 +++ +V++ +D D + L + + G+ K+ ++P++ Sbjct: 162 EM-----GKKMWIRHVLVPERSDYDEDLIKLREFISGLKNVEKVEVLPYHTLGRHKWDNL 216 Query: 323 GCEYL-----CSDQKDIVTFSECIK 342 G EY + + + + Sbjct: 217 GIEYKLDGIAPPTAQRVENANRILN 241 >gi|218546601|gb|ACK98947.1| predicted Fe-S-cluster redox enzyme [Aeromonas salmonicida subsp. masoucida] gi|218546604|gb|ACK98949.1| predicted Fe-S-cluster redox enzyme [Aeromonas salmonicida subsp. salmonicida] gi|218546606|gb|ACK98950.1| predicted Fe-S-cluster redox enzyme [Aeromonas salmonicida subsp. salmonicida] gi|218546611|gb|ACK98953.1| predicted Fe-S-cluster redox enzyme [Aeromonas caviae] Length = 41 Score = 47.6 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 1/35 (2%) Query: 351 RTPRGLDILAACGQLKSLS-KRIPKVPRQEMQITG 384 R RG DI AACGQL R + + MQ G Sbjct: 1 RKTRGDDIDAACGQLVGEVIDRTKRTMKNRMQQDG 35 >gi|289643390|ref|ZP_06475511.1| nitrogenase cofactor biosynthesis protein NifB [Frankia symbiont of Datisca glomerata] gi|289506788|gb|EFD27766.1| nitrogenase cofactor biosynthesis protein NifB [Frankia symbiont of Datisca glomerata] Length = 558 Score = 47.6 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 35/246 (14%), Positives = 79/246 (32%), Gaps = 52/246 (21%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC++ C++C A + V R S I Sbjct: 97 GCNIQCNYCNRK----------------FDCANESRPGVTSKLLTPEQALAKVKRVASEI 140 Query: 183 VMM------GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEE 234 M G GEPL N +++ + + ++ +ST+G V ++ R+ + Sbjct: 141 KQMSVLGVAGPGEPLANAGRTFRTMELVARE----CPDIKLCVSTNGLTLVDHVDRIADL 196 Query: 235 IGVMLAISLHAVSNDLRNILVPI------------NRKYPLEMLIDACRHYPGLSNARRI 282 + I+++ + ++ + P K +E ++ Sbjct: 197 GIDHVTITINMIDPEVGERIYPWVAFRGKRHTGREASKILVERQLEGLAALTER--GILC 254 Query: 283 TFEYVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPG-------CEYLCSDQKDI 334 VM+ G+ND + + + ++G+ A + N++P P +++ Sbjct: 255 KVNSVMIPGVND--EHLVEVSRTVRGMGAFLHNVMPLVSAPEHGTHYGLTGQRGPTPQEL 312 Query: 335 VTFSEC 340 + Sbjct: 313 KALQDR 318 >gi|27365428|ref|NP_760956.1| pyruvate formate lyase-activating enzyme 1 [Vibrio vulnificus CMCP6] gi|37680529|ref|NP_935138.1| pyruvate formate lyase-activating enzyme 1 [Vibrio vulnificus YJ016] gi|320155814|ref|YP_004188193.1| pyruvate formate-lyase activating enzyme [Vibrio vulnificus MO6-24/O] gi|27361575|gb|AAO10483.1| pyruvate formate-lyase 1-activating enzyme [Vibrio vulnificus CMCP6] gi|37199277|dbj|BAC95109.1| pyruvate-formate lyase-activating enzyme [Vibrio vulnificus YJ016] gi|319931126|gb|ADV85990.1| pyruvate formate-lyase activating enzyme [Vibrio vulnificus MO6-24/O] Length = 246 Score = 47.6 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 34/250 (13%), Positives = 76/250 (30%), Gaps = 58/250 (23%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T EEI+ + R + G G Sbjct: 29 GCLMRCMYCHNRDTWDTHDGKE--VTVEEIIKEAKSYRHFMNASGGGITCSGGEAMLQPE 86 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITL-----STSGFVPNIARVG 232 + ++ E + D+ G K + +T + +I + Sbjct: 87 FVRDLFRAAHAEG----------IHTCLDTNGY-IRKHTDVVDEVLEATDLVMLDIKHMK 135 Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 +EI + + NR+ +D R+ + + YV++ G Sbjct: 136 DEIHH--------------DFIGVSNRR-----TLDFARYLHKI--GQTTWIRYVVVPGY 174 Query: 293 NDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFS 338 D P A L + +K + K+ L+P++ ++ ++ + Sbjct: 175 TDDPEAAHMLGEFIKDMDNIEKVELLPYHKLGAHKWEALGLEYPLEGVNPPPKETMDNIV 234 Query: 339 ECIKRSGYSS 348 + + + Sbjct: 235 SILSQYHSNV 244 >gi|89072729|ref|ZP_01159294.1| putative pyruvate formate-lyase 1 activating enzyme [Photobacterium sp. SKA34] gi|89051549|gb|EAR57003.1| putative pyruvate formate-lyase 1 activating enzyme [Photobacterium sp. SKA34] Length = 246 Score = 47.6 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 44/248 (17%), Positives = 88/248 (35%), Gaps = 54/248 (21%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + R T EE++ + R + G Sbjct: 29 GCLMRCLYCHNRDTWDTHGG--REATVEELMHEAKSYRHFMNSSGGG------------- 73 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IG 236 V GE + + V+ A+ + G+ L T+G++ V +E + Sbjct: 74 -----VTASGGEAMLQPEFVRDFFR-AAQAEGI-----HTCLDTNGYIRKHTDVVDEVLD 122 Query: 237 VM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 + + L + +D+ + LV P + ++D R+ ++ YV++ G D Sbjct: 123 ATDLVMLDLKQIDDDIHHNLV----GVPNKRVLDFARYL--HKRGQKTWIRYVVVPGYTD 176 Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSEC 340 R A L + +K + KI L+P++ ++ ++ + T E Sbjct: 177 DERSAHLLGEFIKDMDNIEKIELLPYHQLGEHKWEAMGFEYQLKGVKPPKKETMETIKEI 236 Query: 341 IKRSGYSS 348 I G+ Sbjct: 237 IASYGHKV 244 >gi|160934052|ref|ZP_02081439.1| hypothetical protein CLOLEP_02915 [Clostridium leptum DSM 753] gi|156866725|gb|EDO60097.1| hypothetical protein CLOLEP_02915 [Clostridium leptum DSM 753] Length = 245 Score = 47.6 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 40/240 (16%), Positives = 78/240 (32%), Gaps = 44/240 (18%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C FC+ ++ G ED ++ S Sbjct: 33 GCPLRCGFCHNPD-----------------TWQACTGKAVTPEDAFEDILKYKNFISSGG 75 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP-NIARVGEEIGVMLAI 241 V + GEPL + ++L S G+ + T+G +P + R + +L + Sbjct: 76 VTLSGGEPLLQPE-FCQALISLCHSAGI-----HCAVDTAGSIPLDFCRQAVDAADLLLL 129 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 + A+ L L + + L A Y + + +V++ G+ N Sbjct: 130 DIKALDPTLCQELTGQDNQNAL-----ALLEYCEAAQK-AVWIRHVLVPGLTLRRELLEN 183 Query: 302 LIKILKGIPAK--INLIPFNPWPGCEYLC------------SDQKDIVTFSECIKRSGYS 347 L + L G + L+PF+ ++ + ++ + + G S Sbjct: 184 LAEFLSGFSCVEQVELLPFHKMGEYKWEALNLRSPLSGTREPTKAEVAAAKKIFQSRGLS 243 >gi|224367545|ref|YP_002601708.1| PflC1 [Desulfobacterium autotrophicum HRM2] gi|223690261|gb|ACN13544.1| PflC1 [Desulfobacterium autotrophicum HRM2] Length = 302 Score = 47.6 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 65/184 (35%), Gaps = 29/184 (15%) Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN--IARVGEEIGVMLA 240 V GEPL + V++ + I + TSG V I + + + L Sbjct: 130 VTFSGGEPLFQWQFVRECSKLLRKR------GVHIAMETSGCVKEDIIKEIAPHVDLFLY 183 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 H + R R + ++ + I V++ G+NDSP Sbjct: 184 DLKHIDPVEHRK--YCGIRNESILDNLELLSRM-----GKEIIIRMVVIPGVNDSPGTVE 236 Query: 301 NLIKILKGIPA--KINLIP--------FNPWPG----CEYLCSDQKDIVTFSECIKRSGY 346 L + LKGI I+L+P +N ++ + +++ +E + G+ Sbjct: 237 RLCEFLKGIIGIRYISLLPLHKSATEKYNRLDKEFLLSDFEVPNDEEVKAIAEIFQSKGF 296 Query: 347 SSPI 350 + I Sbjct: 297 TVQI 300 >gi|308270210|emb|CBX26822.1| hypothetical protein N47_A08510 [uncultured Desulfobacterium sp.] Length = 424 Score = 47.6 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 71/195 (36%), Gaps = 35/195 (17%) Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASD---SMGLSFSKRRITLSTSGFVPNIARVGEE 234 +I+ + G G+P N + ++L + + + L + + G +P I + Sbjct: 79 RITVAGIAGPGDPFANPEETMETLRLINKQFPDIILCLATNGM-----GLLPYIDELSGL 133 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYP------------LEMLIDACRHYPGLSNARRI 282 + I+++A+ + + R +E +++ + + + Sbjct: 134 NLTHVTITVNALDPVIGGKIYSWARDGKVLYRKEKAAEKLIERQLESIKKLKEKN--ITV 191 Query: 283 TFEYVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEYLCSDQKDIVTFSECI 341 +++ GIND + + K ++ + I N I P PG E+ + I Sbjct: 192 KINSIIVPGIND--EHIIEIAKEMRHLKVDIMNAIAMFPSPGSEF-----ETIKE----- 239 Query: 342 KRSGYSSPIRTPRGL 356 +G S IR G Sbjct: 240 PGNGLVSRIREEAGK 254 >gi|238920354|ref|YP_002933869.1| pyruvate formate lyase-activating enzyme 1 [Edwardsiella ictaluri 93-146] gi|238869923|gb|ACR69634.1| pyruvate formate-lyase 1-activating enzyme, putative [Edwardsiella ictaluri 93-146] Length = 246 Score = 47.6 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 77/245 (31%), Gaps = 48/245 (19%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T EE++ + R + G G Sbjct: 29 GCLMRCLYCHNRDTWDTHGGKE--VTVEELMKDTVTYRHFMNASGGGVTASGGEAMLQAE 86 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 + + E + D+ G + P I + + Sbjct: 87 FVRDWFRACQAEG----------IHTCLDTNGF----------VRRYDPVIDELLDVTD- 125 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 ++ + L +++D+ LV ++ ++ CR Y N + YV++ G +D Sbjct: 126 LVMLDLKQMNDDIHKNLVGVSNH----RTLEFCR-YLAKRNQ-KTWIRYVVVPGWSDDEA 179 Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKR 343 A L + K + KI L+P++ ++ ++ + + Sbjct: 180 SARLLGEFTKDMKNIEKIELLPYHELGKHKWEAMGETYQLGDVKPPSREIMEKVKGILTE 239 Query: 344 SGYSS 348 G+ Sbjct: 240 YGHKV 244 >gi|85058965|ref|YP_454667.1| pyruvate formate lyase-activating enzyme 1 [Sodalis glossinidius str. 'morsitans'] gi|84779485|dbj|BAE74262.1| pyruvate formate-lyase 1 activating enzyme [Sodalis glossinidius str. 'morsitans'] Length = 246 Score = 47.6 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 42/249 (16%), Positives = 86/249 (34%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + R +T EEI+ +V+ R + G Sbjct: 29 GCLMRCLYCHNRDTWDTHGG--REITVEEIMREVISYRHFMNASGGG------------- 73 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 V GE + + V+ A + G++ + T+GFV P I + E Sbjct: 74 -----VTASGGEAILQAEFVRDWFR-ACHAEGIN-----TCVDTNGFVRRYDPVIDELLE 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + + +++D+ LV ++ L+ Y N R YV++ G + Sbjct: 123 VTD-LVMLDIKEMNDDIHQNLVGVSNHRTLD-----FARYLAKINK-RTWLRYVVVPGWS 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 D + L + + + KI L+P++ ++ + + Sbjct: 176 DDDKSVHMLGEFTQHMSNIEKIELLPYHELGKHKWIAMGEEYRLEGVKPPTTASMDHIRD 235 Query: 340 CIKRSGYSS 348 + G+ Sbjct: 236 ILAGYGHKV 244 >gi|162149506|ref|YP_001603967.1| hypothetical protein GDI_3744 [Gluconacetobacter diazotrophicus PAl 5] gi|161788083|emb|CAP57687.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus PAl 5] Length = 371 Score = 47.6 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 54/143 (37%), Gaps = 16/143 (11%) Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 R+ + L + L A + +R ++P ++ +DA + ++ Y+ Sbjct: 223 FQRLRDVGADTLGMHLEAATQRVRERIMPGKATVSVDRYMDAFASAVPVFGRGQVN-TYI 281 Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFS----EC 340 + G+ D+ + L L L + ++PF P G + + + + Sbjct: 282 L-AGLGDTAEEILALAGRLIALGVYPFVVPFVPISGTPLEDHAPPSAEFMASLFTPLGKM 340 Query: 341 IKRSGYSSPIRTPRGLDILAACG 363 ++ +G +S DI A CG Sbjct: 341 LRTAGMTS-------SDIRAGCG 356 >gi|298530635|ref|ZP_07018037.1| Radical SAM domain protein [Desulfonatronospira thiodismutans ASO3-1] gi|298510009|gb|EFI33913.1| Radical SAM domain protein [Desulfonatronospira thiodismutans ASO3-1] Length = 311 Score = 47.6 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 81/226 (35%), Gaps = 27/226 (11%) Query: 124 CSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 CS C +C T + +VR R ++E + + G K Sbjct: 28 CSFDCLYCESGPTTQKTIVR--------------REYADSGIILAELEKWLNDNQGDKPD 73 Query: 181 NIVMMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238 +I + G GEP N + + + + L+ +T S+ P + + V+ Sbjct: 74 HITLGGEGEPCLNLQLGKIIRDIKKIEPDIPLAV----LTNSSLLGDPQVRKELRNADVV 129 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 L SL + + L ++ + + + R+ E +++ GINDS + Sbjct: 130 LP-SLDTLVQEEFIRLNRPCAGLDIQEIARGLEAFC-KEFSGRVLLEILLVPGINDSREN 187 Query: 299 ALNLIKILKGIPA-KINLIPFN-PWPGCEYLCSDQKDIVTFSECIK 342 + LK + +++L + P + D + + + + + Sbjct: 188 MEKITVFLKNLDHERVDLSVMSRPGAHMQLKTPDHETLHRWQKALH 233 >gi|90407167|ref|ZP_01215355.1| Act [Psychromonas sp. CNPT3] gi|90311743|gb|EAS39840.1| Act [Psychromonas sp. CNPT3] Length = 246 Score = 47.6 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 42/271 (15%), Positives = 89/271 (32%), Gaps = 55/271 (20%) Query: 97 IGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC-----YTGTQKLVRNLTAEEILLQV 151 +G IET + + Q GC + C +C + ++ EE++ ++ Sbjct: 4 MGHVHSIETCGAVDGPGIRFIIFLQ-GCLMRCKYCHNRDTWALDGGKE--MSVEELMTEI 60 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 + R+ + G I G + + ++ + G+ Sbjct: 61 VQYRNYMQASGGGITISGGEAMLQPEFV---------------KAMFEACRL----EGI- 100 Query: 212 FSKRRITLSTSGFVPNIA---RVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 L T+GFV I + E+ ++ + + + + L ++ KY L Sbjct: 101 ----HTCLDTNGFVRRIDDTTKAVLELSDLVLLDIKQIDDHKHIDLTHVSNKYTL----- 151 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY 326 Y N + YV++ G D+ DA L K + + KI L+P++ ++ Sbjct: 152 TFAKYLAEMNQ-PVYLRYVIVPGYTDALEDAHALGKFIAPMKNIEKIELLPYHDLGRHKW 210 Query: 327 ------------LCSDQKDIVTFSECIKRSG 345 ++ + T + Sbjct: 211 IAMGESYPLEGVDSPSKQTMDTIKNILLEYN 241 >gi|319775951|ref|YP_004138439.1| pyruvate formate lyase activating enzyme 1 [Haemophilus influenzae F3047] gi|329123815|ref|ZP_08252373.1| pyruvate formate-lyase 1-activating enzyme [Haemophilus aegyptius ATCC 11116] gi|317450542|emb|CBY86759.1| pyruvate formate lyase activating enzyme 1 [Haemophilus influenzae F3047] gi|327469302|gb|EGF14773.1| pyruvate formate-lyase 1-activating enzyme [Haemophilus aegyptius ATCC 11116] Length = 246 Score = 47.6 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 38/246 (15%), Positives = 88/246 (35%), Gaps = 50/246 (20%) Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC + C +C+ T + R ++ EE++ +V+ R + G G + Sbjct: 29 GCLMRCKYCHNRDTWDLEGGREISVEELMKEVVSYRHFMNATGGGVTASGGEAVLQAEFV 88 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 + ++ + G++ L T+GFV + + +E+ + Sbjct: 89 RD---------------WFRACKV----EGIN-----TCLDTNGFVRHYDHIIDELLDVT 124 Query: 240 AISLHAV---SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 + L + ++ + L+ + K LE Y N YV++ G DS Sbjct: 125 DLVLLDLKELNDQVHQNLIGVPNKRTLE-----FAKYLQKRNQH-TWIRYVVVPGYTDSD 178 Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIK 342 D L + ++G+ K+ L+P++ ++ ++ + ++ Sbjct: 179 HDVHLLGQFIEGMTNIEKVELLPYHRLGAHKWKTLGLDYELENVLPPTKESLEHIKTILE 238 Query: 343 RSGYSS 348 G++ Sbjct: 239 GYGHTV 244 >gi|257452751|ref|ZP_05618050.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. 3_1_5R] gi|257466612|ref|ZP_05630923.1| pyruvate formate-lyase activating enzyme [Fusobacterium gonidiaformans ATCC 25563] gi|315917767|ref|ZP_07914007.1| pyruvate formate-lyase activating enzyme [Fusobacterium gonidiaformans ATCC 25563] gi|317059292|ref|ZP_07923777.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. 3_1_5R] gi|313684968|gb|EFS21803.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. 3_1_5R] gi|313691642|gb|EFS28477.1| pyruvate formate-lyase activating enzyme [Fusobacterium gonidiaformans ATCC 25563] Length = 241 Score = 47.6 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 42/242 (17%), Positives = 81/242 (33%), Gaps = 46/242 (19%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C +C+ N+ A ++ + + V ++ Sbjct: 27 GCPLRCRYCH--------NVDAW---------NLQHPNYIYTSEEILEEVNRVKVFLTGG 69 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLA 240 + + GEPL D VK+ G+ L TSG++ + V EE ++L Sbjct: 70 ITISGGEPLLQADFVKEFFQ-LCHKNGI-----HTALDTSGYIFTEKVKEVLEETDLVL- 122 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 + L + ++ L +N P ++ Y + YV++ G D D Sbjct: 123 LDLKHIDSEKYYDLTSVNLS-PTLEFLE----YLSKTQKD-TWIRYVLVPGYTDDVEDLK 176 Query: 301 NLIKIL-KGIPAK-INLIPFNPWPGCEYLC-----------SDQKDIVTFS-ECIKRSGY 346 + + K K ++++PF+ ++ K+ V F+ G Sbjct: 177 RWAEYVSKYSNVKRVDILPFHQMAIYKWEKERKNYTLRDVLPPTKEAVRFAENIFLSYGL 236 Query: 347 SS 348 Sbjct: 237 PV 238 >gi|47716959|gb|AAT37646.1| NifN-B [Clostridium pasteurianum] Length = 929 Score = 47.2 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 86/221 (38%), Gaps = 37/221 (16%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+++C++C N + + QVL P + + + + ++ + Sbjct: 522 CNISCNYCNRKYD--CTNESRPGVTSQVL--------SPEGALAKFKAVKAKFKNLTVLG 571 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-PNIARVGEEIGV-MLAI 241 + G G+ L NFD VKKS+ + +ST+G + P A E+GV + + Sbjct: 572 IAGPGDALANFDVVKKSIELIKKED----PNITFCISTNGLMLPFFANQLIELGVSHVTV 627 Query: 242 SLHAVSNDLRNILV----PINRKYPLEMLIDACRH-------YPGLSNARRITFEYVMLK 290 ++++V + + I +KY E D H Y S VM+K Sbjct: 628 TMNSVDKKIGAKIYREVNYIGKKYTGEEAADILMHNQLSGLKYLS-SKGVVCKVNIVMIK 686 Query: 291 GINDSPRDALNLIKILKGIPAK----INLIPFNPWPGCEYL 327 G+ND+ ++K K A + LIP G + Sbjct: 687 GVNDT--HIPEVVKKAKECGAFMTNIMKLIPV---EGTAFE 722 >gi|212640612|ref|YP_002317132.1| Pyruvate-formate lyase-activating enzyme [Anoxybacillus flavithermus WK1] gi|212562092|gb|ACJ35147.1| Pyruvate-formate lyase-activating enzyme [Anoxybacillus flavithermus WK1] Length = 242 Score = 47.2 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 30/241 (12%), Positives = 75/241 (31%), Gaps = 50/241 (20%) Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC L C +C+ T + ++ +EI+ + M G + Sbjct: 27 GCLLRCQYCHNADTWEIGKGKQMSVDEIID------------DAQTYLPFMQASGGGITV 74 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF-----SKRRITLSTSGFVPNIARVGEE 234 S GEPL D + + + L S + + F + ++ + Sbjct: 75 S------SGEPLLQIDFL---IELFRRCKQLGIHTTIDSSGGCYTTEASFQRKLDKLLQY 125 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 ++L + + + L E ++ R + + +V++ + D Sbjct: 126 TDLIL-LDVKHIDEKKHRKLTGKTN----EHILAFARLLSERN--VPVWIRHVLVPTVTD 178 Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWPGCEYLC------------SDQKDIVTFSEC 340 D L ++ + KI ++P++ ++ ++ + + Sbjct: 179 DEEDLHRLADFIRTLRNVEKIEVLPYHQLGVYKWKALGLTYPLEGIPTPSEESVQKAKQI 238 Query: 341 I 341 + Sbjct: 239 L 239 >gi|330992920|ref|ZP_08316863.1| Ribosomal RNA large subunit methyltransferase N [Gluconacetobacter sp. SXCC-1] gi|329760074|gb|EGG76575.1| Ribosomal RNA large subunit methyltransferase N [Gluconacetobacter sp. SXCC-1] Length = 364 Score = 47.2 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 51/143 (35%), Gaps = 16/143 (11%) Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 R+ + L + L A + +R ++P ++ +DA + ++ Y+ Sbjct: 219 FQRLRDAGADSLGMHLEAATQAVREKIMPGKATVSVDRYMDAFASAVPIFGRGQVN-TYI 277 Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVT----FSEC 340 + G+ DS D L L + L + ++PF P G + + Sbjct: 278 L-AGLGDSAADILALAERLIALGVYPFVVPFVPISGTPLENHAPPSADFMKSVLAPLGRM 336 Query: 341 IKRSGYSSPIRTPRGLDILAACG 363 ++ + S DI A CG Sbjct: 337 LREANMKST-------DIRAGCG 352 >gi|303229542|ref|ZP_07316330.1| six-Cys-in-45 modification radical SAM protein [Veillonella atypica ACS-134-V-Col7a] gi|303231100|ref|ZP_07317840.1| six-Cys-in-45 modification radical SAM protein [Veillonella atypica ACS-049-V-Sch6] gi|302514231|gb|EFL56233.1| six-Cys-in-45 modification radical SAM protein [Veillonella atypica ACS-049-V-Sch6] gi|302515667|gb|EFL57621.1| six-Cys-in-45 modification radical SAM protein [Veillonella atypica ACS-134-V-Col7a] Length = 469 Score = 47.2 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 78/206 (37%), Gaps = 42/206 (20%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQ---KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMV 171 LC++ C+L C +C+ + R L+ ++ ++ Sbjct: 98 ALCLNIAHDCNLACKYCFASQGDYGGVKR---------------ELMSFDVAKRAVDFLI 142 Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231 S R+ I G GEPL N+D VK+++ ++TL+T+G + + ++ Sbjct: 143 QMSGTRQHCEIDFFG-GEPLLNWDVVKQTVEYIEQEAPKHNKIFKLTLTTNGMLLSQEKI 201 Query: 232 --GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 E + L +SL D R E + +A R ++ + ++EY+ Sbjct: 202 DYVNEHKMSLVLSL-----DGR------------EDVHNAMR---PVAGSGANSYEYIAK 241 Query: 290 KGINDSPRDALNLIKILKGIPAKINL 315 +N + L ++G NL Sbjct: 242 NLVNAVKQR-HGLEYYVRGTYTHKNL 266 >gi|332296006|ref|YP_004437929.1| Radical SAM domain protein [Thermodesulfobium narugense DSM 14796] gi|332179109|gb|AEE14798.1| Radical SAM domain protein [Thermodesulfobium narugense DSM 14796] Length = 306 Score = 47.2 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 37/218 (16%), Positives = 73/218 (33%), Gaps = 34/218 (15%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+ C +C G + N P + + K + Sbjct: 27 CNFNCVYCEVGKTTNLIN-------------DRRSFYNPEEIERDFRENYKKMGKFDFVT 73 Query: 184 MMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM--L 239 G GEP N D + + + + +I + T+G + N+ V E++ + Sbjct: 74 FSGSGEPTLNKDIGRLVRYVKSFN--------LAKIAVLTNGSLLNLTDVQEDLMDADVV 125 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 SL A + + + + ++ +I+ + + I E + +K NDS +D Sbjct: 126 IPSLDAANQESFKKINRAHGSLKIDEIINGIKEFRD-KFRGEIWLESLFVKDFNDSKKDI 184 Query: 300 LNLIKILKGIPAKINLI-PFNPWPGCEYLCSDQKDIVT 336 +L + +K LI P G ++ I Sbjct: 185 EDLKRAVK-------LINPHKFQIGTIDRPPAEESIKK 215 >gi|238763316|ref|ZP_04624280.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia kristensenii ATCC 33638] gi|238698415|gb|EEP91168.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia kristensenii ATCC 33638] Length = 246 Score = 47.2 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 40/249 (16%), Positives = 83/249 (33%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T EE++ + + R + G Sbjct: 29 GCLMRCLYCHNRDTWDTHGGKE--VTVEELVKEAVTYRHFMNASGGG------------- 73 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 V GE + + V+ A G+ L T+GFV P I + + Sbjct: 74 -----VTASGGEAILQAEFVRDWFR-ACHEEGI-----HTCLDTNGFVRRYDPVIDELLD 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L + + + LV ++ LE Y N + YV++ G + Sbjct: 123 ATD-LVMLDLKQMDDSVHQNLVGVSNHRTLE-----FARYLAKRNQ-KTWIRYVVVPGWS 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 D + A L + + + KI L+P++ ++ ++ + Sbjct: 176 DDDKSAHMLGEFTQNMTNIEKIELLPYHELGKHKWIAMGEEYKLDGVKPPTKEIMDRVKG 235 Query: 340 CIKRSGYSS 348 ++ G+ Sbjct: 236 ILESYGHKV 244 >gi|134300647|ref|YP_001114143.1| radical SAM domain-containing protein [Desulfotomaculum reducens MI-1] gi|134053347|gb|ABO51318.1| Radical SAM domain protein [Desulfotomaculum reducens MI-1] Length = 299 Score = 47.2 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 93/229 (40%), Gaps = 35/229 (15%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C++C N + + QV+ P + +V+ +S + Sbjct: 45 CNIGCNYCNRKYD--CTNESRPGVTSQVIT--------PILAQQKFIVVKEKFPNLSVVG 94 Query: 184 MMGMGEPLCNFDNVKKSLSIA---SDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 + G G+ L N+++ ++++ + M S + L + P I ++G + + Sbjct: 95 IAGPGDALANWESTREAIERIKASNPEMIFCLSTNGLML--PHYAPEIVKLGIK---HVT 149 Query: 241 ISLHAVSNDLRNILV----PINRKYP--------LEMLIDACRHYPGLSNARRITFEYVM 288 ++++ V+ + + +KY L+ + ++ G ++ VM Sbjct: 150 VTMNTVNPETGAKIYQFVHYQGKKYTGIEGAKILLQNQLTGIQYLAGQGVLVKVNI--VM 207 Query: 289 LKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEYLCSDQKDIVT 336 +KGIND ++ ++K +K + A + N++P P G + ++ Sbjct: 208 IKGIND--QEISEVVKKVKQLGAFMSNIMPLIPVEGTVFAKLPSTNMKE 254 >gi|317047551|ref|YP_004115199.1| pyruvate formate-lyase activating enzyme [Pantoea sp. At-9b] gi|316949168|gb|ADU68643.1| pyruvate formate-lyase activating enzyme [Pantoea sp. At-9b] Length = 246 Score = 47.2 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 76/245 (31%), Gaps = 48/245 (19%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T E+++ VL R + G G Sbjct: 29 GCLMRCLYCHNRDTWDTHGGKE--ITVEDLMKDVLSYRHFMNASGGGVTASGGEAILQAE 86 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 + + E + D+ G + P I + E Sbjct: 87 FVRDWFRACRAEG----------IHTCLDTNGF----------VRRYDPVIDELLEVTD- 125 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 ++ + L +++D+ ILV ++ +D R+ R YV++ G +D Sbjct: 126 LVMLDLKQINDDIHQILVGVSNH----RTMDFARYLQKK--GTRTWIRYVVVPGYSDDDD 179 Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKR 343 L + + + KI L+P++ ++ ++ + + Sbjct: 180 SVHRLGEFTQDMDNIEKIELLPYHELGKHKWIAMGEEYKLEGVKPPTKETMERVKNILSG 239 Query: 344 SGYSS 348 G+ Sbjct: 240 YGHQV 244 >gi|333008877|gb|EGK28337.1| pyruvate formate-lyase 1-activating enzyme [Shigella flexneri K-272] gi|333020187|gb|EGK39457.1| pyruvate formate-lyase 1-activating enzyme [Shigella flexneri K-227] Length = 246 Score = 47.2 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 37/249 (14%), Positives = 84/249 (33%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T E+++ +V+ R + G G Sbjct: 29 GCLMRCLYCHNRDTWDTHGGKE--VTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAE 86 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 + + ++ G+ L T+GFV P I + E Sbjct: 87 FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLE 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L +++++ LV ++ LE Y N ++ YV++ G + Sbjct: 123 VTD-LVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAKYLANKN-VKVWSRYVVVPGWS 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 D A L + + + KI L+P++ ++ ++ + Sbjct: 176 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 235 Query: 340 CIKRSGYSS 348 +++ G+ Sbjct: 236 ILEQYGHKV 244 >gi|210620573|ref|ZP_03292121.1| hypothetical protein CLOHIR_00064 [Clostridium hiranonis DSM 13275] gi|210155287|gb|EEA86293.1| hypothetical protein CLOHIR_00064 [Clostridium hiranonis DSM 13275] Length = 298 Score = 47.2 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 56/149 (37%), Gaps = 22/149 (14%) Query: 216 RITLSTSGFVPN--IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY 273 + + T+G+V + E+ ++L H R + Y +++++ + Sbjct: 156 HVAIETTGYVKKETFEELARELDLLLFDVKHY----DREKHYNGTKVYN-DLIVENLK-- 208 Query: 274 PGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEY------ 326 + N + ++ NDS DA L K+L + A K+ L+PF+ + +Y Sbjct: 209 WAIDNGIEVLPRIPVIPDFNDSLEDAEGLAKLLVEVGAKKVQLLPFHQFGEKKYELLNRN 268 Query: 327 ------LCSDQKDIVTFSECIKRSGYSSP 349 +++ + + G + Sbjct: 269 YKYKNKKALYPEELEEYQKIFLDKGLNCF 297 >gi|19703472|ref|NP_603034.1| Fe-S oxidoreductase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296328997|ref|ZP_06871504.1| Fe-S oxidoreductase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|19713554|gb|AAL94333.1| Fe-S oxidoreductase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296153890|gb|EFG94701.1| Fe-S oxidoreductase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 284 Score = 47.2 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 82/234 (35%), Gaps = 38/234 (16%) Query: 124 CSLTCSFC---YTGTQKLVRN--LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 C+L C FC T +L R +EIL ++ K Sbjct: 28 CNLNCIFCECGATKKIQLERQRFKDMDEILNEIQSVLK-------------------NIK 68 Query: 179 ISNIVMMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236 I G GEP + D N+ K++ G +I L T+ + +V +E+ Sbjct: 69 PDYITFSGSGEPTLSLDLGNISKAIKEDLKYKG------KICLITNSLLLANNQVIKELE 122 Query: 237 V--MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 ++ +L+ + D+ +V + + ++ + + + +I E +L+ IND Sbjct: 123 YIDLIVPTLNTLKQDIFEKIVRPDYRTSVDEIKKGFVNLNNSNYKGKIWIEIFILENIND 182 Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWP----GCEYLCSDQKDIVTFSECIKRS 344 S + + + L + + I N + I + ++ + Sbjct: 183 SEENFIEIANFLNLENIRYDKIQLNTIDRVGAERDLKAISFDKIFKAKKILEEN 236 >gi|291037331|ref|ZP_06568295.1| iron-molybdenum cofactorbiosynthesis nitrogenase NifB [Gluconacetobacter xylinus NBRC 3288] Length = 368 Score = 47.2 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 51/143 (35%), Gaps = 16/143 (11%) Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 R+ + L + L A + +R ++P ++ +DA + ++ Y+ Sbjct: 223 FQRLRDAGADSLGMHLEAATQAVREKIMPGKATVSVDRYMDAFASAVPVFGRGQVN-TYI 281 Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVT----FSEC 340 + G+ DS D L L + L + ++PF P G + + Sbjct: 282 L-AGLGDSAADILALAERLIALGVYPFVVPFVPISGTPLENHAPPSADFMKSVLAPLGRM 340 Query: 341 IKRSGYSSPIRTPRGLDILAACG 363 ++ + S DI A CG Sbjct: 341 LREANMKST-------DIRAGCG 356 >gi|319638107|ref|ZP_07992871.1| pyruvate formate-lyase 1-activating enzyme [Neisseria mucosa C102] gi|317400752|gb|EFV81409.1| pyruvate formate-lyase 1-activating enzyme [Neisseria mucosa C102] Length = 268 Score = 47.2 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 38/245 (15%), Positives = 77/245 (31%), Gaps = 52/245 (21%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C +C+ N + L + M R Sbjct: 49 GCLMRCLYCH--------NRDTWD-----LHTEQAQELDVATVMKQVMTYRHYLRATGGG 95 Query: 183 VMMGMGEPLCNFDNVKK--------SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234 V GEPL ++ V+ + DS G + + + + + Sbjct: 96 VTATGGEPLLQYEFVRDWFTACREHDIHTCLDSNGYAL----------HYDSILNDLLDH 145 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 ++ + L + ++ +LV P + R+ + R+ YV++ G D Sbjct: 146 TN-LVMLDLKQIDPEIHKVLV----GIPNTKTLKFARYLTERNQPTRV--RYVVVPGYTD 198 Query: 295 SPRDALNLIKILKGIPAK--INLIPFNP-------WPGCEYL-----CSDQKDIVTFSEC 340 R A L + + + + L+P++ G EY ++ I+ E Sbjct: 199 DERSAHLLGEFIGDMDNVEMVELLPYHELGAHKWALCGDEYKLTGVHPPPKETILKIKEI 258 Query: 341 IKRSG 345 ++ G Sbjct: 259 LESYG 263 >gi|53803297|ref|YP_114978.1| radical SAM domain-containing protein [Methylococcus capsulatus str. Bath] gi|53757058|gb|AAU91349.1| radical SAM domain protein [Methylococcus capsulatus str. Bath] Length = 365 Score = 47.2 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 49/253 (19%), Positives = 82/253 (32%), Gaps = 39/253 (15%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLG---DFPGCEDIEGMVIPSVGRKIS 180 C+ C +C L R + VLL+R L G D + E +P R+I Sbjct: 124 CNWRCIYCQVPD--LRRGGAPA--VDVVLLSRELEGLLADVLEGDFFERYGVPDDQRRIR 179 Query: 181 NIVMMGMGEP--LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVG------ 232 +I + G GEP F+ V ++ ++ GL + L T+G I R+ Sbjct: 180 DIAISGNGEPTGAAEFEQVIAAIEKVTERFGLP-GRIGFVLITNG--SGIERLPVQQGLR 236 Query: 233 --EEIGVMLAISLHAVSND-LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 +G + L + + +R I + I AC L T + + Sbjct: 237 HWAALGGEVWFKLDSATEAGIRRINNVHLEPQTVRRRIAAC---AKLCPTWLQTCLFALD 293 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSD------------QKDIVTF 337 + +P L L G+ + IP + + F Sbjct: 294 GAPSSAPEQEAYLA-FLSGLVC--DGIPVRGVLLYGLARPSLQPESSRLARLPAEALEAF 350 Query: 338 SECIKRSGYSSPI 350 I+ G + I Sbjct: 351 GAAIRERGLAVRI 363 >gi|225023347|ref|ZP_03712539.1| hypothetical protein EIKCOROL_00205 [Eikenella corrodens ATCC 23834] gi|224943825|gb|EEG25034.1| hypothetical protein EIKCOROL_00205 [Eikenella corrodens ATCC 23834] Length = 271 Score = 47.2 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 41/279 (14%), Positives = 90/279 (32%), Gaps = 51/279 (18%) Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVR------NLTAEE 146 P IG +ET + + Q GC + C +C+ R + T + Sbjct: 23 PYEGIGYVHSVETGGAVDGPGLRFVLFMQ-GCLMRCLYCH-NRDTWDRHSEKELHFTVPQ 80 Query: 147 ILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK-SLSIAS 205 ++ QVL + G G EPL + ++ ++ Sbjct: 81 LMQQVLSYKHYFRATGGGVTATGG------------------EPLLQYQFIRDWFVACRE 122 Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEM 265 + L + + + + ++ + L + ++ +LV P Sbjct: 123 HDIHTCLDTNGYAL---HYDSAMEELLDNTN-LVMLDLKQIDPEIHKVLV----GIPNTK 174 Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPG 323 ++ R+ RI YV++ G D R A L + + +P + L+P++ Sbjct: 175 VLHFARYLADRGQPTRI--RYVVVPGYTDDDRSAHLLGEFIADMPNADTVELLPYHELGA 232 Query: 324 CEYL------------CSDQKDIVTFSECIKRSGYSSPI 350 ++ ++ ++ E I+ G + + Sbjct: 233 HKWELCGDEYKLKGVSPPPKETMLRIKEIIESYGKQTIV 271 >gi|189347159|ref|YP_001943688.1| Radical SAM domain protein [Chlorobium limicola DSM 245] gi|189341306|gb|ACD90709.1| Radical SAM domain protein [Chlorobium limicola DSM 245] Length = 321 Score = 47.2 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 38/225 (16%), Positives = 76/225 (33%), Gaps = 30/225 (13%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+ C +C G K + P E G I I Sbjct: 38 CTWNCVYCQIGRTK-------------HYVTERCEFYPPEEILKEIRDALQAGTHIDWIT 84 Query: 184 MMGMGEPLC--NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 +G GE L + + + + + + + T+G + ++ V E+ A+ Sbjct: 85 FVGSGETLLYKDIGYLIEEVKKMT--------AIPVAVITNGSLFHLEEVRRELLHADAV 136 Query: 242 --SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 SL+A S +L + + + +D + ++ E ++L G+NDS Sbjct: 137 LPSLNAGSEELYERIDRPASGFTFKQHLDGLIQF-RQEYKGKLWVEVMLLNGLNDSDEAL 195 Query: 300 LNLI---KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341 L K++ + ++P P P + + D + I + Sbjct: 196 NELAAAMKLVAPDMVHL-VLPTRPAPEQQVVLPDNERIDRAVVIL 239 >gi|330836098|ref|YP_004410739.1| glycyl-radical enzyme activating protein family [Spirochaeta coccoides DSM 17374] gi|329748001|gb|AEC01357.1| glycyl-radical enzyme activating protein family [Spirochaeta coccoides DSM 17374] Length = 252 Score = 47.2 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 88/245 (35%), Gaps = 38/245 (15%) Query: 123 GCSLTCSFCYT--GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 GC+L C +C VR E + ++ +L D + Sbjct: 27 GCNLRCHWCANPESISMKVRPELEESLGGRIWKLEEVLHDVLKDKVFYDESGGG------ 80 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP--NIARVGEEIGVM 238 V + GEPL D +L A + G++ + + T+ VP +V E++ V Sbjct: 81 --VTLSGGEPLLQAD-FACALCDALHAHGVA-----VAIETAACVPEQTFMKVFEKLDVA 132 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 I L ++ +++++ R L+ + + ++ G NDS D Sbjct: 133 -HIDLKHWNDAS----YRQGTGAGIDLVLSNIRR--ALAGSIPVFLRIPIIPGFNDSLED 185 Query: 299 ALNLIKILKGIPAK-INLIPFNPWPGCEYLCSD------------QKDIVTFSECIKRSG 345 A +L + A + L+PF+ + +Y +D+ ++ +K SG Sbjct: 186 ARQFGNVLADVGANAVQLLPFHQFGEKKYEKLALEYSMNGIAQLHDEDVQDYASVLKESG 245 Query: 346 YSSPI 350 I Sbjct: 246 LHVQI 250 >gi|46562239|ref|YP_009047.1| nitrogenase cofactor biosynthesis protein NifB [Desulfovibrio vulgaris str. Hildenborough] gi|46447776|gb|AAS94442.1| nitrogenase cofactor biosynthesis protein NifB [Desulfovibrio vulgaris str. Hildenborough] gi|311235389|gb|ADP88242.1| Radical SAM domain protein [Desulfovibrio vulgaris RCH1] Length = 514 Score = 46.8 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 58/182 (31%), Gaps = 29/182 (15%) Query: 184 MMGMGEPLCNFDNVKKSLSIA---SDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 + G G+P+ N ++L + M S + G P++ + Sbjct: 82 IAGPGDPMANAAATLETLRLIRQRHPDMLFCLSSNGL-----GMPPHLDALAANGVTHAT 136 Query: 241 ISLHAVSNDLRNILVPI------------NRKYPLEMLIDACRHYPGLSNARRITFEYVM 288 ++++AV D+ L + LE + A + ++ Sbjct: 137 LTINAVDPDISARLYTWVRDGKVVWRGRPAAELMLERQLTALTGLVQR--GIVVKVNTIL 194 Query: 289 LKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEYLC---SDQKDIVTFSECIKRS 344 + GIND + + + + A +N+IP +P + + + + + Sbjct: 195 VPGINDG--HVEQVAEKVAALGATLMNIIPLHPTHDTPLAQVAEPSPEAVGE-ARRLAGA 251 Query: 345 GY 346 Sbjct: 252 HI 253 >gi|291326420|ref|ZP_06124398.2| pyruvate formate-lyase 1-activating enzyme [Providencia rettgeri DSM 1131] gi|291314456|gb|EFE54909.1| pyruvate formate-lyase 1-activating enzyme [Providencia rettgeri DSM 1131] Length = 265 Score = 46.8 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 41/249 (16%), Positives = 81/249 (32%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + + +T EE++ + + R + G Sbjct: 48 GCLMRCLYCHNRDTWDTHGGNI--VTVEELMKEAVTYRHFMNATGGG------------- 92 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 V GE + + V+ L T+GFV P I + + Sbjct: 93 -----VTASGGEAILQAEFVRDWFRACKKEN------IHTCLDTNGFVRRYDPVIDELMD 141 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L + +++ LV ++ LE Y N + YV++ G + Sbjct: 142 VTD-LVMLDLKQIDDEIHQKLVGVSNHRTLE-----FARYLAKRNQ-KTWVRYVVVPGWS 194 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNP-------WPGCEYL-----CSDQKDIVTFSE 339 D L + K + KI L+P++ G EY ++ + Sbjct: 195 DDDHSVHLLGEFTKDMSNIEKIELLPYHELGKHKWETMGEEYKLDGVRPPSKEVMERVKS 254 Query: 340 CIKRSGYSS 348 ++ G+ Sbjct: 255 ILESYGHKV 263 >gi|294636920|ref|ZP_06715247.1| pyruvate formate-lyase 1-activating enzyme [Edwardsiella tarda ATCC 23685] gi|291089873|gb|EFE22434.1| pyruvate formate-lyase 1-activating enzyme [Edwardsiella tarda ATCC 23685] Length = 246 Score = 46.8 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 41/249 (16%), Positives = 86/249 (34%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T EE++ + R + G Sbjct: 29 GCLMRCLYCHNRDTWDTHGGKE--VTVEELMKDTVTYRHFMNASGGG------------- 73 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 V GE + + V+ A + G+ L T+GFV P + + + Sbjct: 74 -----VTASGGEAMLQAEFVRDWFR-ACKAEGI-----HTCLDTNGFVRRYDPVVDELLD 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L +++D+ LV ++ ++ CR Y N + YV++ G + Sbjct: 123 VTD-LVMLDLKQMNDDIHKNLVGVSNH----RTLEFCR-YLAKRNQ-KTWIRYVVVPGWS 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 D A L + K + KI L+P++ ++ ++ + Sbjct: 176 DDEASARLLGEFTKDMKNIEKIELLPYHELGKHKWEAMGETYQLGDVKPPSREIMERVKG 235 Query: 340 CIKRSGYSS 348 ++ G+ Sbjct: 236 ILEEYGHKV 244 >gi|154493910|ref|ZP_02033230.1| hypothetical protein PARMER_03254 [Parabacteroides merdae ATCC 43184] gi|154086170|gb|EDN85215.1| hypothetical protein PARMER_03254 [Parabacteroides merdae ATCC 43184] Length = 240 Score = 46.8 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 34/240 (14%), Positives = 67/240 (27%), Gaps = 40/240 (16%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C +C+ N E + E + V+ Sbjct: 27 GCPLRCLYCH--------NPDTWE-------VKRETPYLLEPEALLAEVLRYKNFIAKGG 71 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 V + GEPL + +K+ G+ L TSG++ + + V L + Sbjct: 72 VTVTGGEPLLQPEFLKEFFR-LCRENGI-----HTALDTSGYICSGKALEVLEQVDLVLL 125 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 + L P L+ + + +V++ G+ D L Sbjct: 126 DIKTIDA---GLHPRLTAVKLDNTLRFLDELEKR--GIPVWIRHVIVPGLTDDDEALSKL 180 Query: 303 IKILKGIPA--KINLIPFNPWPGCEYLCS------------DQKDIVTFSECIKRSGYSS 348 + + K L+P++ +Y + + + G + Sbjct: 181 AEYISSYNVVQKAELLPYHTMGAYKYEAQGLDYKLKGVEPLSAERLANAKAIFMKHGVTV 240 >gi|194336098|ref|YP_002017892.1| Radical SAM domain protein [Pelodictyon phaeoclathratiforme BU-1] gi|194308575|gb|ACF43275.1| Radical SAM domain protein [Pelodictyon phaeoclathratiforme BU-1] Length = 311 Score = 46.8 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 75/235 (31%), Gaps = 35/235 (14%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+ C +C R + E + + I Sbjct: 27 CTWNCVYC---QLGKTRK----------FVTERQEFFAREEILEEIREALERHKGLDWIT 73 Query: 184 MMGMGEPLCNFDN---VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 +G GE + + + + +D + + T+G + + V EE+ A Sbjct: 74 FVGSGETML-YKGIGWLIAEVKKLTD--------IPVAVITNGSLLYLEEVREELLQADA 124 Query: 241 I--SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 + SL+A S L N +V ++ + R+ E ++L GINDS Sbjct: 125 VLPSLNAGSEALHNQIVRPAAGLTFRQHLEGLVAF-RHEYQGRLWIEVMLLGGINDSDEA 183 Query: 299 ALNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI 350 +L +LK I + ++P P P E + I + + + Sbjct: 184 LRDLAIVLKEINPDMVHL-VLPTRPAPEQEVHLPSDERIERAIAILSE---VTTV 234 >gi|157867036|ref|XP_001682073.1| hypothetical protein [Leishmania major strain Friedlin] gi|68125524|emb|CAJ03385.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 416 Score = 46.8 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 38/236 (16%), Positives = 80/236 (33%), Gaps = 32/236 (13%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEE---ILLQ---VL--LARSLLGDFPGCEDIEGMVIPSV 175 C+ C FC+ +L N TA E ++ + V+ + S G + G+ ++ Sbjct: 72 CANNCVFCW----RLNSNPTAAEWKWMVDEPKDVVEGMISSHQALINGVRGMPGVTDEAL 127 Query: 176 GRKI--SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233 + + + +GEP+ + V + L++ S ++ F I + Sbjct: 128 EEALAPRHCALSLVGEPIL-YPYVNEFLNLLHAK-----SISSFLVNNGQFPDAIRNLAP 181 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 L +S+ A + IL E ++ + R F M+ G N Sbjct: 182 VTQ--LYLSVDAPNQKTMKILDRPVLPDYWERFNESVNN--MRKKKHRTVFRLTMIDGFN 237 Query: 294 DSPRDALNLIKIL-KGIPAKINLIPFNPWPGCEYLC-------SDQKDIVTFSECI 341 P + ++ +G P I + P + + + F++ + Sbjct: 238 MEPENLPEYKELFDRGQPHFIEIKRLTPAFSGNHNTILCIKNVPSWEKMKAFAQQL 293 >gi|317052952|ref|YP_004119306.1| Radical SAM domain protein [Pantoea sp. At-9b] gi|316953279|gb|ADU72750.1| Radical SAM domain protein [Pantoea sp. At-9b] Length = 369 Score = 46.8 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 60/144 (41%), Gaps = 8/144 (5%) Query: 223 GFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI 282 G R+ + L + L AV+ +R ++P + ++ ++A + ++ Sbjct: 215 GDAKWFQRLKDAGIDALGMHLEAVTPAVRARIMPGKAQVSVDQYLEAFADAVAVFGRGQV 274 Query: 283 TFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIK 342 + Y++ G+ D+PR L+L + L + ++PF P G D S ++ Sbjct: 275 S-TYIL-AGLGDTPRAILSLSETLIDLGVYPFVVPFVPISGTPLEHHPAPDSQFMSSILQ 332 Query: 343 RSGY---SSPIRTPRGLDILAACG 363 G + +R+ DI A CG Sbjct: 333 PLGQMLSQARLRSS---DIKAGCG 353 >gi|294955470|ref|XP_002788521.1| hypothetical protein Pmar_PMAR010051 [Perkinsus marinus ATCC 50983] gi|239904062|gb|EER20317.1| hypothetical protein Pmar_PMAR010051 [Perkinsus marinus ATCC 50983] Length = 117 Score = 46.8 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 4/84 (4%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSII 71 + LE L+++G ++H + I+ D +S IS++ LL++ F Sbjct: 20 LDTPALEAFLVEVGSSRQHASTIQKALLTDIH----FDPSRLSGISKKAASLLDEAFMRC 75 Query: 72 YPEIVDEKISCDGTRKWLLRFPAR 95 + +++S DGT K L+ Sbjct: 76 STSVTMKQVSSDGTTKMLITLQVG 99 >gi|220905214|ref|YP_002480526.1| Radical SAM domain-containing protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869513|gb|ACL49848.1| Radical SAM domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 481 Score = 46.8 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 57/144 (39%), Gaps = 13/144 (9%) Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN-IARVGEEIGVMLAISLHAV 246 G+PL N D +++S+ + G + +T+ P +AR+ E + +SL++ Sbjct: 254 GDPLMNADLLEESIRLFRSGGG----AGTVNCNTNASRPQAVARLAEAGLTSMRVSLNSA 309 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 L Y L+ + ++ R S + + GI D+ + L +++ Sbjct: 310 RPVL-YERYYRPVDYCLDDVKESIR--AARSRGIFVALNLLFFPGITDTEEELDALARMV 366 Query: 307 KGIPAKINLIPF---NPWPGCEYL 327 +++I + N P + Sbjct: 367 GENG--VSMIQWRNLNIDPEWYFR 388 >gi|317152744|ref|YP_004120792.1| nitrogenase cofactor biosynthesis protein NifB [Desulfovibrio aespoeensis Aspo-2] gi|316942995|gb|ADU62046.1| nitrogenase cofactor biosynthesis protein NifB [Desulfovibrio aespoeensis Aspo-2] Length = 423 Score = 46.8 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 41/279 (14%), Positives = 94/279 (33%), Gaps = 55/279 (19%) Query: 124 CSLTCSFCYTGTQ--KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 C++ C++C R IL A+ + + +I+ Sbjct: 31 CNIQCNYCNRKYDCVNESRPGVTSGILKPFQAAQYMDK------------VLEKEPRITV 78 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASD---SMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238 + G G+P N V +++ + ++ + S + G +P + + Sbjct: 79 AGIAGPGDPFANPAEVIETMRLLNERHPELLFCLSTNGM-----GILPYLDDIAALGVSH 133 Query: 239 LAISLHAVSNDLRNILVPINRKYP------------LEMLIDACRHYPGLSNARRITFEY 286 + I++ AV + + + LE + A R + Sbjct: 134 VTITISAVDPAIGARIYAWVKDGNVVYRGEQGAALLLERQLAAIRGLKER--GIVVKINS 191 Query: 287 VMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEY---LCSDQKDIVTFSECIK 342 +++ G+N+ + + ++ + A I N+IP P + + ++ + + Sbjct: 192 IIIPGVNEG--HLVEVARVTAALGADIQNMIPLKPTQDTPFAELPEPGRDVVLPLRK--E 247 Query: 343 RSGYS---SPIRTPR-------GLDILAA-CGQLKSLSK 370 G+ + + R G D AA CG L++ +K Sbjct: 248 AGGFISQMTHCKRCRADAVGLLGNDQSAALCGTLQACAK 286 >gi|170024904|ref|YP_001721409.1| pyruvate formate lyase-activating enzyme 1 [Yersinia pseudotuberculosis YPIII] gi|186894824|ref|YP_001871936.1| pyruvate formate lyase-activating enzyme 1 [Yersinia pseudotuberculosis PB1/+] gi|21959685|gb|AAM86344.1|AE013882_5 pyruvate formate lyase activating enzyme 1 [Yersinia pestis KIM 10] gi|45435898|gb|AAS61455.1| pyruvate formate lyase activating enzyme 1 [Yersinia pestis biovar Microtus str. 91001] gi|169751438|gb|ACA68956.1| pyruvate formate-lyase activating enzyme [Yersinia pseudotuberculosis YPIII] gi|186697850|gb|ACC88479.1| pyruvate formate-lyase activating enzyme [Yersinia pseudotuberculosis PB1/+] Length = 265 Score = 46.8 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 45/283 (15%), Positives = 92/283 (32%), Gaps = 57/283 (20%) Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC-----YTGTQKLVRNLT 143 L+ +G E+ + V Q GC + C +C + +T Sbjct: 15 LVEDKKPVLGRIHSFESCGTVDGPGIRFIVFFQ-GCLMRCLYCHNRDTWDTHGGKE--VT 71 Query: 144 AEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI 203 EE++ + + R + G V GE + + V+ Sbjct: 72 VEELVKEAVTYRHFMNASGGG------------------VTASGGEAILQAEFVRDWFR- 112 Query: 204 ASDSMGLSFSKRRITLSTSGFV----PNIARVGEEIGVMLAISLHAVSNDLRNILVPINR 259 A G+ L T+GFV P I + + ++ + L + + + LV ++ Sbjct: 113 ACHKEGI-----HTCLDTNGFVRRYDPVIDELLDATD-LVMLDLKQMDDSIHQNLVGVSN 166 Query: 260 KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIP 317 LE Y N + YV++ G +D + A L + + + KI L+P Sbjct: 167 HRTLE-----FARYLAKRNQ-KTWIRYVVVPGWSDDDKSAHMLGEFTQNMSNIEKIELLP 220 Query: 318 FNPWPGCEY------------LCSDQKDIVTFSECIKRSGYSS 348 ++ ++ ++ + ++ G+ Sbjct: 221 YHELGKHKWIAMGEEYKLDGVKPPTKEIMDRVKGILEGYGHKV 263 >gi|308270504|emb|CBX27116.1| hypothetical protein N47_A11450 [uncultured Desulfobacterium sp.] Length = 436 Score = 46.4 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 38/201 (18%), Positives = 77/201 (38%), Gaps = 28/201 (13%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+ C C + L N +I ++ + P E+I + + + ++V Sbjct: 205 CNARCIGCLS----LQNN---SDIKN----SQDRISFTPTPEEISEIAAEHINKVKRSVV 253 Query: 184 MMGMG---EPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNIA-RVGEEIGV 237 G G +PL ++ ++ + S G I ++T+ +P I + + Sbjct: 254 SFGQGCEGDPLLAAHVIEPAIRLIRKSTQDG------TINMNTNASMPKILTNLFDAGLD 307 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 + IS+++V + + N Y +I + L + ++ Y+ G DSP Sbjct: 308 SVRISMNSVRENCYDTYFRPN-GYSFSDVIKSID--MALEKNKFVSINYLNCPGFTDSPE 364 Query: 298 DALNLIKILKGIPAKINLIPF 318 + L LK P +N I + Sbjct: 365 EIAALYDFLKKHP--VNFIQW 383 >gi|318606276|emb|CBY27774.1| pyruvate formate-lyase activating enzyme [Yersinia enterocolitica subsp. palearctica Y11] Length = 246 Score = 46.4 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 40/249 (16%), Positives = 82/249 (32%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T EE++ + + R + G Sbjct: 29 GCLMRCLYCHNRDTWDTHGGKE--VTVEELVKEAVTYRHFMNASGGG------------- 73 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 V GE + + V+ A G+ L T+GFV P I + + Sbjct: 74 -----VTASGGEAILQAEFVRDWFR-ACHEEGI-----HTCLDTNGFVRRYDPVIDELLD 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L + + + LV ++ LE Y N + YV++ G + Sbjct: 123 ATD-LVMLDLKQMDDSVHQNLVGVSNHRTLE-----FARYLAKRNQ-KTWIRYVVVPGWS 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 D + A L + + + KI L+P++ ++ + + Sbjct: 176 DDDKSAHMLGEFTQNMTNIEKIELLPYHELGKHKWIAMGEEYKLDGVKPPTTEIMDRVKG 235 Query: 340 CIKRSGYSS 348 ++ G+ Sbjct: 236 ILESYGHKV 244 >gi|154491018|ref|ZP_02030959.1| hypothetical protein PARMER_00935 [Parabacteroides merdae ATCC 43184] gi|154088766|gb|EDN87810.1| hypothetical protein PARMER_00935 [Parabacteroides merdae ATCC 43184] Length = 62 Score = 46.4 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 7/50 (14%) Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDF 50 MN +K L+GM +EL+ + G+P Q+ W+Y + DF Sbjct: 1 MN--EKRRLLGMTLDELKGVAFEAGLPG----YAAKQMADWLYKKK-SDF 43 >gi|238784521|ref|ZP_04628529.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia bercovieri ATCC 43970] gi|238714584|gb|EEQ06588.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia bercovieri ATCC 43970] Length = 246 Score = 46.4 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 40/249 (16%), Positives = 82/249 (32%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T EE++ + + R + G Sbjct: 29 GCLMRCLYCHNRDTWDTHGGKE--VTVEELVKEAVTYRHFMNASGGG------------- 73 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 V GE + + V+ A G+ L T+GFV P I + + Sbjct: 74 -----VTASGGEAILQAEFVRDWFR-ACHEEGI-----HTCLDTNGFVRRYDPVIDELLD 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L + + + LV ++ LE Y N + YV++ G + Sbjct: 123 ATD-LVMLDLKQMDDSVHQNLVGVSNHRTLE-----FARYLAKRNQ-KTWIRYVVVPGWS 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 D + A L + + + KI L+P++ ++ + + Sbjct: 176 DDDKSAHMLGEFTQNMTNIEKIELLPYHELGKHKWIAMGEEYKLDGVKPPTAEIMDRVKG 235 Query: 340 CIKRSGYSS 348 ++ G+ Sbjct: 236 ILESYGHKV 244 >gi|325577286|ref|ZP_08147770.1| pyruvate formate-lyase activating enzyme [Haemophilus parainfluenzae ATCC 33392] gi|325160868|gb|EGC72989.1| pyruvate formate-lyase activating enzyme [Haemophilus parainfluenzae ATCC 33392] Length = 256 Score = 46.4 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 38/246 (15%), Positives = 89/246 (36%), Gaps = 50/246 (20%) Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC + C +C+ T + R ++ EE++ +V+ R + G G + Sbjct: 39 GCLMRCKYCHNRDTWDLEGGREISVEELMKEVVSYRHFMNATGGGVTASGGEAVLQAEFV 98 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 + ++ + G++ L T+GFV + + +E+ + Sbjct: 99 RD---------------WFRACK----AEGIN-----TCLDTNGFVRHYDHIIDELLDVT 134 Query: 240 AISLHAV---SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 + L + ++ + L+ + K LE Y N R YV++ G D+ Sbjct: 135 DLVLLDLKELNDQVHQNLIGVPNKRTLE-----FAKYLQKRNQ-RTWIRYVVVPGYTDND 188 Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIK 342 D L + ++G+ K+ L+P++ ++ ++ + ++ Sbjct: 189 HDVHLLGQFIEGMTNIEKVELLPYHRLGAHKWKTLGFEYELADVLPPTKESLEHIKTILE 248 Query: 343 RSGYSS 348 G++ Sbjct: 249 GYGHTV 254 >gi|293396829|ref|ZP_06641103.1| pyruvate formate-lyase 1-activating enzyme [Serratia odorifera DSM 4582] gi|291420300|gb|EFE93555.1| pyruvate formate-lyase 1-activating enzyme [Serratia odorifera DSM 4582] Length = 246 Score = 46.4 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 47/249 (18%), Positives = 85/249 (34%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T EE++ + R + G Sbjct: 29 GCLMRCLYCHNRDTWDTHGGKE--VTVEELMKDTVSYRHFMNASGGG------------- 73 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 V GE + + V+ A G++ L T+GFV P I + + Sbjct: 74 -----VTASGGEAILQAEFVRDWFR-ACHQEGIN-----TCLDTNGFVRRYDPVIDELLD 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L +++D+ LV ++ LE Y N R YV++ G + Sbjct: 123 TTD-LVMLDLKQMNDDIHQNLVGVSNHRTLE-----FARYLAKRNQ-RTWIRYVVVPGWS 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNP-------WPGCEYL-----CSDQKDIVTFSE 339 D R A L + K + KI L+P++ G EY + Sbjct: 176 DDDRSAHLLGEFTKDMANIEKIELLPYHELGKHKWVAMGEEYKLDGVHPPKADTMDRVKG 235 Query: 340 CIKRSGYSS 348 ++ G++ Sbjct: 236 ILESYGHTV 244 >gi|295402436|ref|ZP_06812389.1| pyruvate formate-lyase activating enzyme [Geobacillus thermoglucosidasius C56-YS93] gi|312112710|ref|YP_003991026.1| pyruvate formate-lyase activating enzyme [Geobacillus sp. Y4.1MC1] gi|294975527|gb|EFG51152.1| pyruvate formate-lyase activating enzyme [Geobacillus thermoglucosidasius C56-YS93] gi|311217811|gb|ADP76415.1| pyruvate formate-lyase activating enzyme [Geobacillus sp. Y4.1MC1] Length = 249 Score = 46.4 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 38/240 (15%), Positives = 77/240 (32%), Gaps = 46/240 (19%) Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC L C +C+ T + +T EEI+ V +P + Sbjct: 27 GCVLRCQYCHNADTWEIGKGKEMTVEEIIDDV-----------------KTYLPFINASN 69 Query: 180 SNIVMMGMGEPLCNFD---NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236 I + G GEPL D + K+ + S T + + F + + Sbjct: 70 GGITVSG-GEPLLQIDFLIELFKACKKLGIHTAIDSSGGCYT-TEASFQQKLNELLSYTD 127 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 ++L + L + L K+ L+ + N + +V++ I D P Sbjct: 128 LIL-LDLKHIDEKKHRKLTGKTNKHILQ-----FAQFLSEKN-VPVWIRHVLVPTITDDP 180 Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIK 342 D L ++ + KI ++P++ ++ ++ + + Sbjct: 181 NDLRRLAAFIRTLKNVKKIEILPYHKLGVYKWKALGLKYPLEGIEPPSEESVQMAQRILN 240 >gi|194334439|ref|YP_002016299.1| nitrogenase cofactor biosynthesis protein NifB [Prosthecochloris aestuarii DSM 271] gi|194312257|gb|ACF46652.1| nitrogenase cofactor biosynthesis protein NifB [Prosthecochloris aestuarii DSM 271] Length = 424 Score = 46.4 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 63/164 (38%), Gaps = 23/164 (14%) Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIG 236 IS + + G G+P N + ++L + + + ++T+G +P I + + Sbjct: 75 ISVVGIAGPGDPFANPEETMETLRLVREKY----PDMLLCVATNGLNVMPYIEELAQLQV 130 Query: 237 VMLAISLHAVSNDLRNILVPI------------NRKYPLEMLIDACRHYPGLSNARRITF 284 + ++++AV ++ + + K LE + A + + Sbjct: 131 SHVTLTINAVDPEIGSEIYAWVRHRKKMYRDTNAAKILLESQLAALKKLKEI--GVTAKV 188 Query: 285 EYVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEYL 327 +++ G+ND + + K + + A I N +P+ + Sbjct: 189 NAIVIPGVND--KHVAEVAKTVAELGADIFNCLPYYNTAETVFE 230 >gi|323341138|ref|ZP_08081386.1| pyruvate formate-lyase activating enzyme [Lactobacillus ruminis ATCC 25644] gi|323091559|gb|EFZ34183.1| pyruvate formate-lyase activating enzyme [Lactobacillus ruminis ATCC 25644] Length = 274 Score = 46.4 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 40/245 (16%), Positives = 80/245 (32%), Gaps = 56/245 (22%) Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC++ C FC+ T + + +TA+E+L + L R G+ G G ++ Sbjct: 44 GCNMRCKFCHNPDTWKKNVGTTMTADEVLKKALPYREFWGEQGGITLSGGEILLQPEF-- 101 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEE 234 +L + + L S L T G P + Sbjct: 102 --------------------ALDLFTKCKELGISTC---LDTCGQPFTRRKPWFDTFNKL 138 Query: 235 IGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 + V L + + + +D +L +P E ++D C + + + + +V++ Sbjct: 139 LDVTDILLVDIKHIDSDKHKLLT----GFPNENILDLCEYLSEI--GKPVWIRHVLIPTQ 192 Query: 293 NDSPRDALNLIKILKGIP---AKINLIPFN-------PWPGCEYL-----CSDQKDIVTF 337 D D L +K K+ ++P++ G Y Q + Sbjct: 193 TDFDEDLEKLGNYIKTHLRNVMKVEVLPYHTMGVHKYHEMGIPYRLEGVEPPTQDRVENA 252 Query: 338 SECIK 342 + Sbjct: 253 ERLLH 257 >gi|282599809|ref|ZP_05971952.2| pyruvate formate-lyase 1-activating enzyme [Providencia rustigianii DSM 4541] gi|282567912|gb|EFB73447.1| pyruvate formate-lyase 1-activating enzyme [Providencia rustigianii DSM 4541] Length = 197 Score = 46.4 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 53/148 (35%), Gaps = 25/148 (16%) Query: 216 RITLSTSGFV----PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 L T+GFV P I + E ++ + L + +++ LV ++ LE Sbjct: 52 HTCLDTNGFVRRYDPVIDELMEVTD-LVMLDLKQLDDEIHQKLVGVSNHRTLE-----FA 105 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY--- 326 Y N + YV++ G +D L + +K + KI L+P++ ++ Sbjct: 106 RYLAKRNQ-KTWIRYVVVPGWSDDDHSVHMLGEFVKDMNNIEKIELLPYHELGKHKWETM 164 Query: 327 ---------LCSDQKDIVTFSECIKRSG 345 + + ++ G Sbjct: 165 GEEYKLDGVKPPSKDVMERVKNILESYG 192 >gi|218533265|ref|YP_002424080.1| radical SAM protein [Methylobacterium chloromethanicum CM4] gi|218525568|gb|ACK86152.1| Radical SAM domain protein [Methylobacterium chloromethanicum CM4] Length = 367 Score = 46.4 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 58/146 (39%), Gaps = 12/146 (8%) Query: 225 VPNIARVGEEIGV----MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280 P+ R E + + L + L AV+ ++R ++P PLE A + Sbjct: 209 PPDDDRWFERMKLSGVDALGMHLEAVTPEVRARIMPGKASVPLERYYAAFEAAVPVFGRG 268 Query: 281 RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTF 337 +++ Y++ G+ D+P L + + L G+ ++PF P G + Sbjct: 269 QVS-TYIL-AGLGDTPEAILAMAERLIGMGVYPFVVPFVPISGTALESHPAPGPDFMHAI 326 Query: 338 SECIKRSGYSSPIRTPRGLDILAACG 363 + + + +R+ DI A CG Sbjct: 327 LKPLAGMLAGANLRST---DIKAGCG 349 >gi|220931257|ref|YP_002508165.1| Radical SAM domain protein [Halothermothrix orenii H 168] gi|219992567|gb|ACL69170.1| Radical SAM domain protein [Halothermothrix orenii H 168] Length = 311 Score = 46.0 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 36/229 (15%), Positives = 82/229 (35%), Gaps = 23/229 (10%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 CS +C +C G K + + E+ + + ++ G ++ + Sbjct: 26 CSYSCVYCQVGRTKKM-CINPVEV--------DDKEEIKENVRQKLDLLEQRGERVDYLT 76 Query: 184 MMGMGEPLC--NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLA 240 + GEP N + KS+ + + IT S++ P + + + V L Sbjct: 77 FIADGEPTLASNLAEIIKSVR------DFNINTAIITNSSTIDRPGVKESLKMVDWVSLK 130 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 + + ++ + + + + + + + + +T E +++KGINDS + Sbjct: 131 CDAY--TEEVWHKINRPHGGLEPGKIKNGMIEFSRDYSGKMVT-ETMLVKGINDSEEELK 187 Query: 301 NLIKILKGIPAKINLIPFNPWPGCEY--LCSDQKDIVTFSECIKRSGYS 347 ++ L I ++ I P E + + I K G + Sbjct: 188 SIASFLNEIKPDVSYISIPTRPPAEEYAVSPTPESINRAYNIFKSQGLT 236 >gi|294140395|ref|YP_003556373.1| pyruvate formate-lyase 1 activating enzyme [Shewanella violacea DSS12] gi|293326864|dbj|BAJ01595.1| pyruvate formate-lyase 1 activating enzyme [Shewanella violacea DSS12] Length = 246 Score = 46.0 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 33/249 (13%), Positives = 75/249 (30%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFCYTGTQKLVRN---------LTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 GC + C +C+ R+ + +E++ Q++ R L G G Sbjct: 29 GCLMRCQYCH------NRDTWDLHGGSEVEVKELMEQIISYRPFLEASGGGVTASGGEAI 82 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233 +S + E + D+ G + P I + + Sbjct: 83 LQAEFVSELFAECKKEG----------IHTCLDTNGF----------VRKYTPIIDELID 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++L + + + + L ++ L+ Y ++ YV++ G Sbjct: 123 NTDLVL-LDIKHIDDQRHIDLTQVSNHRTLD-----FAQYLNKK-QQKTWIRYVVVGGFT 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSE 339 D A L LK + K+ L+P++ ++ + + + Sbjct: 176 DDIGAAQRLADFLKPMTNIEKVELLPYHELGKHKWEAMGETYQLDNISPPSSETMEQIKK 235 Query: 340 CIKRSGYSS 348 +G + Sbjct: 236 VFVDAGIKA 244 >gi|188025792|ref|ZP_02959835.2| hypothetical protein PROSTU_01734 [Providencia stuartii ATCC 25827] gi|188020518|gb|EDU58558.1| hypothetical protein PROSTU_01734 [Providencia stuartii ATCC 25827] Length = 273 Score = 46.0 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 42/252 (16%), Positives = 83/252 (32%), Gaps = 62/252 (24%) Query: 123 GCSLTCSFCY--------TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 GC + C +C+ TG +T EE++ + + R + G Sbjct: 56 GCLMRCLYCHNRDTWDTHTGKM-----VTVEELMKEAVTYRHFMNATGGG---------- 100 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIAR 230 V GE + + V+ + L T+GFV P I Sbjct: 101 --------VTASGGEAILQAEFVRD---WFRACKAQNI---HTCLDTNGFVRRYDPVIDE 146 Query: 231 VGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 + E ++ + L +++D+ LV ++ LE Y N + YV++ Sbjct: 147 LMEVTD-LVMLDLKQLNDDIHQTLVGVSNHRTLE-----FARYLAKRNQ-KTWVRYVVVP 199 Query: 291 GINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVT 336 G +D L + K + KI L+P++ ++ ++ + Sbjct: 200 GWSDDDHSVHLLGEFTKDMKNIEKIELLPYHELGKHKWETMGEEYKLDGVKPPSKEIMER 259 Query: 337 FSECIKRSGYSS 348 ++ G+ Sbjct: 260 VKSILESYGHKV 271 >gi|153816513|ref|ZP_01969181.1| hypothetical protein RUMTOR_02766 [Ruminococcus torques ATCC 27756] gi|145846133|gb|EDK23051.1| hypothetical protein RUMTOR_02766 [Ruminococcus torques ATCC 27756] Length = 270 Score = 46.0 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 7/147 (4%) Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 G + ++ ++ S R+ + G GEPL N+ VK ++ + + R T++T+ Sbjct: 6 GKKALDFLIANSGKRRNLEVDFFG-GEPLMNWQVVKDLVAYGREQEKIHDKHFRFTVTTN 64 Query: 223 GFV--PNIARV--GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN 278 G + I E V+L++ ND + N K ++++ + N Sbjct: 65 GVLLNDEIQEFVNKEMDNVVLSLDGRKEVNDK--MRPFRNGKGSYDLIVPKFQKLAESRN 122 Query: 279 ARRITFEYVMLKGINDSPRDALNLIKI 305 + + D D L+ + Sbjct: 123 QEKYYIRGTFTRNNLDFSNDVLHFADL 149 >gi|146304501|ref|YP_001191817.1| tRNA-modifying enzyme [Metallosphaera sedula DSM 5348] gi|145702751|gb|ABP95893.1| Wyosine base formation [Metallosphaera sedula DSM 5348] Length = 364 Score = 46.0 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 55/161 (34%), Gaps = 9/161 (5%) Query: 147 ILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD 206 I+ + + + K S++ + GEP ++ + + + Sbjct: 105 IVERSIEEHKRSVSGYLGREGVENNKALEAMKPSHVAISLTGEPTL-YERIGELIRE-YH 162 Query: 207 SMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEML 266 G+ L TSG P++ EE L +SL A + + ++ ++ Sbjct: 163 KRGI-----TTFLVTSGVRPDVLASLEEEPSQLFVSLQAPNEEKHRLINRPVVANSWNLV 217 Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 + P S M+K +N S DA K+++ Sbjct: 218 MKTLEILPSFS--SPTVIRMTMMKEVNMSDDDAREFAKLMR 256 >gi|153816128|ref|ZP_01968796.1| hypothetical protein RUMTOR_02376 [Ruminococcus torques ATCC 27756] gi|145846613|gb|EDK23531.1| hypothetical protein RUMTOR_02376 [Ruminococcus torques ATCC 27756] Length = 331 Score = 46.0 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 7/147 (4%) Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 G + ++ ++ S R+ + G GEPL N+ VK ++ + + R T++T+ Sbjct: 6 GKKALDFLIANSGKRRNLEVDFFG-GEPLMNWQVVKDLVAYGREQEKIHDKHFRFTVTTN 64 Query: 223 GFV--PNIARV--GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN 278 G + I E V+L++ ND + N K ++++ + N Sbjct: 65 GVLLNDEIQEFVNKEMDNVVLSLDGRKEVNDK--MRPFRNGKGSYDLIVPKFQKLAESRN 122 Query: 279 ARRITFEYVMLKGINDSPRDALNLIKI 305 + + D D L+ + Sbjct: 123 QEKYYIRGTFTRNNLDFSNDVLHFADL 149 >gi|86605193|ref|YP_473956.1| pyruvate formate-lyase activating enzyme [Synechococcus sp. JA-3-3Ab] gi|86553735|gb|ABC98693.1| pyruvate formate-lyase activating enzyme [Synechococcus sp. JA-3-3Ab] Length = 250 Score = 46.0 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 39/243 (16%), Positives = 78/243 (32%), Gaps = 47/243 (19%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C +C+ R+ A QV+ SL+ + C + Sbjct: 37 GCPLRCLYCHNPD---CRDPNAG----QVVTVDSLMAEIQRCRNYYLKGGG--------- 80 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP-NIAR--VGEEIGVML 239 V GEPL + V + + L TSG+ P +A+ + V+L Sbjct: 81 VTASGGEPLMQPNFVAEIFRRCHELD------LHTALDTSGYAPLGVAKPVLAHTDLVLL 134 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 I + L L+ +D R+ + +V++ G+ D + Sbjct: 135 DIKSYLP------ELYRKVTGVSLQPTLDLARYLDQIHK--PTWIRFVLVPGLTDPEENI 186 Query: 300 LNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKRSG 345 L + + + ++ ++PF+ ++ + I + + G Sbjct: 187 KGLAEFVATLSNVERVEVLPFHKMGEYKWQQLGLPYTLSDVQPPTPEQINHALQIFRERG 246 Query: 346 YSS 348 + Sbjct: 247 LVA 249 >gi|304397064|ref|ZP_07378943.1| pyruvate formate-lyase activating enzyme [Pantoea sp. aB] gi|304355213|gb|EFM19581.1| pyruvate formate-lyase activating enzyme [Pantoea sp. aB] Length = 246 Score = 46.0 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 33/245 (13%), Positives = 75/245 (30%), Gaps = 48/245 (19%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + ++ E ++ VL R + G G Sbjct: 29 GCLMRCLYCHNRDTWDTHGGKE--ISVEALMADVLSYRHFMNASGGGVTASGGEAILQAE 86 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 + + E + D+ G + P I + + Sbjct: 87 FVRDWFRACKAEG----------IHTCLDTNGF----------VRRYDPVIDELLDVTD- 125 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 ++ + L +++D+ ILV ++ L+ Y R +V++ G +D Sbjct: 126 LVMLDLKQMNDDVHQILVGVSNHRTLD-----FARYLQKKGK-RTWIRFVVVPGYSDDDD 179 Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKR 343 A L + + + KI L+P++ ++ ++ + + Sbjct: 180 TAHRLGEFTRDMQNVEKIELLPYHELGKHKWIAMGEEYKLDGVKPPGKETMERVKNILAS 239 Query: 344 SGYSS 348 G+ Sbjct: 240 YGHEV 244 >gi|260772500|ref|ZP_05881416.1| pyruvate formate-lyase activating enzyme [Vibrio metschnikovii CIP 69.14] gi|260611639|gb|EEX36842.1| pyruvate formate-lyase activating enzyme [Vibrio metschnikovii CIP 69.14] Length = 246 Score = 46.0 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 33/245 (13%), Positives = 80/245 (32%), Gaps = 48/245 (19%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC C +C + ++ EEI+ + R + G G Sbjct: 29 GCLFRCKYCHNRDTWDTHSGKE--VSVEEIIKEAKSYRHFMNASGGGITCSGGESMLQPE 86 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 + ++ E + D+ G K + P I V + + Sbjct: 87 FVRDVFRAAKAEG----------IHTCLDTNGY-IRK---------YTPVIDEVLDVTDL 126 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 +L + + + +D+ L+ ++ K +D R+ + + YV++ G D Sbjct: 127 VL-LDIKQIKDDVHQDLIGVSNK----RTLDFARYL--HTIGKATWLRYVVVPGYTDDEE 179 Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIKR 343 A L + ++ + KI L+P++ ++ ++ + + + + Sbjct: 180 SAHLLGQFIQEMDNIEKIELLPYHKLGAHKWEAMGETYPLEGVNPPSKETMDKIVDVLMQ 239 Query: 344 SGYSS 348 ++ Sbjct: 240 YHHNV 244 >gi|307299480|ref|ZP_07579280.1| Radical SAM domain protein [Thermotogales bacterium mesG1.Ag.4.2] gi|306914879|gb|EFN45266.1| Radical SAM domain protein [Thermotogales bacterium mesG1.Ag.4.2] Length = 316 Score = 46.0 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 43/246 (17%), Positives = 74/246 (30%), Gaps = 49/246 (19%) Query: 116 LCVSSQVGCSLTCSFCYTGTQKLVRNLT--------AEEILLQVLLARSLLGDFPGCEDI 167 +C C+ C +C N+T EEIL + G+ Sbjct: 19 VCTIPFKTCNYACVYC---QLGRTTNMTNTRQTFYPPEEILSEARRFIEAHGEESFDV-- 73 Query: 168 EGMVIPSVGRKISNIVMMGMGEPLC--NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225 + ++G GEP D + + L + + + L T+G + Sbjct: 74 --------------VTVVGEGEPTLYKPLDAIVRGLREMT--------GKPLVLITNGSL 111 Query: 226 PNIARVGEEIG----VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281 + EEI VM + A + + K E + + Sbjct: 112 LFDRELVEEIKDFDIVMPTLD--AKDEESFKRINRPFGKLTYEKVYKGLLDF-SKEFKGE 168 Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFS 338 I E +++K NDS L K + I IN+ P P + I F+ Sbjct: 169 IWLEVMLIKDYNDSDGFLRELKKKIDQIKPARVYINV-PARPPAESGIEVPSESAIE-FA 226 Query: 339 ECIKRS 344 + + Sbjct: 227 RTLLNA 232 >gi|319898144|ref|YP_004136341.1| pyruvate formate lyase activating enzyme 1 [Haemophilus influenzae F3031] gi|317433650|emb|CBY82035.1| pyruvate formate lyase activating enzyme 1 [Haemophilus influenzae F3031] Length = 246 Score = 46.0 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 38/246 (15%), Positives = 87/246 (35%), Gaps = 50/246 (20%) Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC + C +C+ T R ++ EE++ +V+ R + G G + Sbjct: 29 GCLMRCKYCHNRDTWDLDGGREISVEELMKEVVSYRHFMNATGGGVTASGGEAILQAEFV 88 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 + ++ + G++ L T+GFV + + +E+ + Sbjct: 89 RD---------------WFRACK----AEGIN-----TCLDTNGFVRHYDHIIDELLDVT 124 Query: 240 AISLHAV---SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 + L + ++ + L+ + K LE Y N YV++ G DS Sbjct: 125 DLVLLDLKELNDQVHQNLIGVPNKRTLE-----FAKYLQKRNQH-TWIRYVVVPGYTDSD 178 Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIK 342 D L + ++G+ K+ L+P++ ++ ++ + ++ Sbjct: 179 HDVHLLGQFIEGMTNIEKVELLPYHRLGAHKWKTLGLDYELEDVLPPTKESLEHIKTILE 238 Query: 343 RSGYSS 348 G++ Sbjct: 239 GYGHTV 244 >gi|206896250|ref|YP_002247794.1| radical SAM domain protein [Coprothermobacter proteolyticus DSM 5265] gi|206738867|gb|ACI17945.1| radical SAM domain protein [Coprothermobacter proteolyticus DSM 5265] Length = 312 Score = 46.0 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 35/240 (14%), Positives = 80/240 (33%), Gaps = 42/240 (17%) Query: 124 CSLTCSFCYTGT---QKLVRNLT--AEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 CS C +C G ++ R L E+ +V + I + Sbjct: 26 CSYNCVYCQVGRTLHMQVKRTLYSNPSEVFDEV--------------KKKVERIGETQQN 71 Query: 179 ISNIVMMGMGEPLCNFDNVK-KSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIG 236 + I ++ GEP D+ + + D L IT S+ + ++ + + Sbjct: 72 VDYISIVPDGEP--TLDSSLGELIERLKD---LGLPVAVITNSSLTWDKSVQEDLKKADW 126 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 V + I + + + + L+ ++ + + G T E +++K +ND+P Sbjct: 127 VSVKIDAVSPNTWK--QINRPHASLSLDEILQGMQEFAGSYTGTLCT-ETMLVKDLNDNP 183 Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYL--------CSDQKDIVTFSECIKRSGYSS 348 + + +K + P+ + G + + I + G ++ Sbjct: 184 EELTAIANFVKSR-----ISPYKAYIGVPTRPPAEPWVSRPEPESITAAYAIFTKEGLNA 238 >gi|255030887|ref|ZP_05302838.1| hypothetical protein LmonL_20406 [Listeria monocytogenes LO28] Length = 39 Score = 46.0 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Query: 350 IRTPRGLDILAACGQLKSLS-KRIPKVPRQEMQITG 384 IR G DI AACGQL+S KR+ R + + Sbjct: 1 IRREHGTDIDAACGQLRSKQIKRVGVRERMKQKQAA 36 >gi|134297917|ref|YP_001111413.1| pyruvate formate-lyase activating enzyme [Desulfotomaculum reducens MI-1] gi|134050617|gb|ABO48588.1| pyruvate formate-lyase activating enzyme [Desulfotomaculum reducens MI-1] Length = 229 Score = 46.0 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 78/220 (35%), Gaps = 40/220 (18%) Query: 117 CVSSQVGCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMV 171 CV GC L C +C + + ++EI+ +V +S + G Sbjct: 21 CVVFFQGCLLRCRYCHNPDTWDLLGGQE--MDSDEIVKKVRRFKSYFHNNGG-------- 70 Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231 I + G GEPL D ++ G+ + G + I Sbjct: 71 ----------ITLSG-GEPLLQPD-FAFAILQQCKKEGIHTAVDTSGCIDVGALEKILPF 118 Query: 232 GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291 + L + + AV + L + L + +M +D R + YV+L G Sbjct: 119 TDL----LLLDVKAVDDSLYHWL-TGGKAETFQMAVDYIRQ-----QKTPLWLRYVVLPG 168 Query: 292 INDSPRDALNLIKILK--GIPA-KINLIPFNPWPGCEYLC 328 +NDSP L K++ G K+ L+P++ ++ Sbjct: 169 MNDSPEYRYRLEKLINSLGDQVKKVELLPYHTMGVHKWKK 208 >gi|212709771|ref|ZP_03317899.1| hypothetical protein PROVALCAL_00819 [Providencia alcalifaciens DSM 30120] gi|212687582|gb|EEB47110.1| hypothetical protein PROVALCAL_00819 [Providencia alcalifaciens DSM 30120] Length = 197 Score = 46.0 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 54/148 (36%), Gaps = 25/148 (16%) Query: 216 RITLSTSGFV----PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 L T+GFV P I + + ++ + L + +++ LV ++ LE Sbjct: 52 HTCLDTNGFVRRYDPVIDELMDVTD-LVMLDLKQLDDEIHQKLVGVSNHRTLE-----FA 105 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY--- 326 Y N + YV++ G +D L + +K + KI L+P++ ++ Sbjct: 106 RYLAKRNQ-KTWIRYVVVPGWSDDDHSVHMLGEFVKDMDNIEKIELLPYHELGKHKWETM 164 Query: 327 ---------LCSDQKDIVTFSECIKRSG 345 ++ + ++ G Sbjct: 165 GEEYKLDGVRPPSKEVMERVKSILESYG 192 >gi|330990596|ref|ZP_08314553.1| iron-molybdenum cofactorbiosynthesis nitrogenase NifB [Gluconacetobacter sp. SXCC-1] gi|329762298|gb|EGG78785.1| iron-molybdenum cofactorbiosynthesis nitrogenase NifB [Gluconacetobacter sp. SXCC-1] Length = 315 Score = 45.7 bits (107), Expect = 0.011, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 51/143 (35%), Gaps = 16/143 (11%) Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 R+ + L + L A + +R ++P ++ ++A + ++ Y+ Sbjct: 170 FQRLRDAGADSLGMHLEAATQAVREKIMPGKATVSVDRYMNAFASAVPVFGRGQVN-TYI 228 Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVT----FSEC 340 + G+ DS D L L + L + ++PF P G + + Sbjct: 229 L-AGLGDSAADILALAERLIALGVYPFVVPFVPISGTPLENHAPPSADFMKSVLAPLGRM 287 Query: 341 IKRSGYSSPIRTPRGLDILAACG 363 ++ + S DI A CG Sbjct: 288 LREANMKST-------DIRAGCG 303 >gi|218258025|ref|ZP_03474467.1| hypothetical protein PRABACTJOHN_00120 [Parabacteroides johnsonii DSM 18315] gi|218225824|gb|EEC98474.1| hypothetical protein PRABACTJOHN_00120 [Parabacteroides johnsonii DSM 18315] Length = 240 Score = 45.7 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 34/240 (14%), Positives = 69/240 (28%), Gaps = 40/240 (16%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C +C+ N E + + + V+ Sbjct: 27 GCPLRCLYCH--------NPDTWE-------VKRETPYQLEPKALLAEVLRYKNFIAKGG 71 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 V + GEPL + +K+ G+ L TSG++ + + V L + Sbjct: 72 VTVTGGEPLLQPEFLKEFFR-LCRENGI-----HTALDTSGYICSGKALEVLEYVDLVLL 125 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 + L P L+ + + +V++ G+ D+ D L Sbjct: 126 DIKTIDA---GLHPRLTAVKLDNTLRFLDELEKRD--IPVWVRHVVVPGLTDNDEDLEKL 180 Query: 303 IKILKGIPA--KINLIPFNPWPGCEYLCS------------DQKDIVTFSECIKRSGYSS 348 + K L+P++ +Y + + ++ G + Sbjct: 181 AGYVSRYKVIQKAELLPYHTMGTYKYEAQGLDYKLKGVEPLSAERLANAKTIFRKHGINV 240 >gi|206895500|ref|YP_002247405.1| heme biosynthesis (NirJ-2) family protein [Coprothermobacter proteolyticus DSM 5265] gi|206738117|gb|ACI17195.1| heme biosynthesis (NirJ-2) family protein [Coprothermobacter proteolyticus DSM 5265] Length = 423 Score = 45.7 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 70/195 (35%), Gaps = 24/195 (12%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC++ C++ C +C+ + + DF +D +++ S Sbjct: 68 ALCLNVTHTCNMACKYCFAQQGN--------------YGGQQAVMDFAVAKDAVDLLMKS 113 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV--G 232 ++I G GEPL +D V+++L+ A++ K R +L+T+G + ++ Sbjct: 114 SSSW-ADIDFFG-GEPLIAWDTVEQTLAYATERAMAKNKKVRFSLTTNGLLLTPDKLDVL 171 Query: 233 EEIGVMLAISLHAVS---NDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 + V L +SL + R V + +I+A + + Sbjct: 172 DRYNVNLTLSLDGPRVVHDKFR---VDRAGDGTFDKVIEAFKEVERRRQGKNYYVRGTFT 228 Query: 290 KGINDSPRDALNLIK 304 + L+ Sbjct: 229 HDTLNFSESVTFLVD 243 >gi|167624514|ref|YP_001674808.1| pyruvate formate lyase-activating enzyme 1 [Shewanella halifaxensis HAW-EB4] gi|167354536|gb|ABZ77149.1| pyruvate formate-lyase activating enzyme [Shewanella halifaxensis HAW-EB4] Length = 246 Score = 45.7 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 39/249 (15%), Positives = 83/249 (33%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFCYTGT-----QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C+ + ++++ Q++ R P E G V S G Sbjct: 29 GCLMRCLYCHNRDTWDLHGGKE--MKVDDLMSQIISYR------PFLEASGGGVTASGGE 80 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 I + + K+ G+ L T+GFV P I + + Sbjct: 81 AILQADFVA---------ELFKACK----KEGI-----HTCLDTNGFVRKHTPIIDELLD 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++L + + + + +L ++ L+ Y ++ YV++ G Sbjct: 123 NTDLVL-LDIKQIDDAKHIVLTNVSNHRTLQ-----FAEYLHKR-GQKTWIRYVVVGGYT 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFN-------PWPGCEYL-----CSDQKDIVTFSE 339 D A L + +K + K+ L+P++ G +Y + + + Sbjct: 176 DDIPSAQALAEFIKPMTNVEKVELLPYHELGKHKWEAMGVDYELNTISPPSTETMEQIKK 235 Query: 340 CIKRSGYSS 348 G ++ Sbjct: 236 VFTDMGINA 244 >gi|238749780|ref|ZP_04611285.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia rohdei ATCC 43380] gi|238712435|gb|EEQ04648.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia rohdei ATCC 43380] Length = 246 Score = 45.7 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 40/249 (16%), Positives = 82/249 (32%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T EE++ + + R + G Sbjct: 29 GCLMRCLYCHNRDTWDTHGGKE--VTVEELVKEAVTYRHFMNASGGG------------- 73 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 V GE + + V+ A G+ L T+GFV P I + + Sbjct: 74 -----VTASGGEAILQAEFVRDWFR-ACHKEGI-----HTCLDTNGFVRRYDPVIDELLD 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L + + + LV ++ LE Y N + YV++ G + Sbjct: 123 ATD-LVMLDLKQMDDSVHQNLVGVSNHRTLE-----FARYLAKRNQ-KTWIRYVVVPGWS 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 D + A L + + + KI L+P++ ++ + + Sbjct: 176 DDDKSAHMLGEFTQNMTNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPTTEIMDRVKG 235 Query: 340 CIKRSGYSS 348 ++ G+ Sbjct: 236 ILESYGHKV 244 >gi|153811927|ref|ZP_01964595.1| hypothetical protein RUMOBE_02320 [Ruminococcus obeum ATCC 29174] gi|149832061|gb|EDM87146.1| hypothetical protein RUMOBE_02320 [Ruminococcus obeum ATCC 29174] Length = 245 Score = 45.7 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 38/243 (15%), Positives = 80/243 (32%), Gaps = 55/243 (22%) Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC++ C FC+ T + T ++L Q L ++ G+ G Sbjct: 31 GCAMRCQFCHNPDTWKMGEGQQYTPSQLLKQALRYKNYWGNKGG---------------- 74 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEE 234 I + G GEPL D + + A + TL TS P ++ E Sbjct: 75 --ITVSG-GEPLLQIDFLTELFRQAKA------AGVHTTLDTSANPYTEKEPFYSKWLEL 125 Query: 235 IGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 + + + + + + L + K ++ R + + + +V++ G Sbjct: 126 MKYTDLVLLDIKQIDEEEHIKLTGQSNKN----ILAMARKLSDM--GKPMWIRHVLVPGG 179 Query: 293 NDSPRDALNLIKILKGIPA--KINLIPFN-------PWPGCEY-----LCSDQKDIVTFS 338 +D L + + ++ ++P++ G Y ++ I Sbjct: 180 SDKDEYLHRLADFIHTLKTVERVEVLPYHTLGVFKWEQLGIPYPLEGVRPPSEERINNAR 239 Query: 339 ECI 341 E + Sbjct: 240 EIL 242 >gi|303246291|ref|ZP_07332571.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ] gi|302492354|gb|EFL52226.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ] Length = 431 Score = 45.7 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 25/190 (13%), Positives = 69/190 (36%), Gaps = 27/190 (14%) Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN-IARVGEEIGVMLAISLHAV 246 GEPL + + +++ + G + ++T+ +P+ + R G + +SL + Sbjct: 248 GEPLTEIEAISEAVKRFRAAGGRG----TVNVNTNASLPDAVERFAASGGSSIRVSLSSA 303 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 L + Y + ++ + ++ ++ G++D+ + L +++ Sbjct: 304 DPALYAAYYRP-KGYDFADVRESIAR--AKAGGLFVSLNFLFFPGVSDTEAELAQLTELI 360 Query: 307 KGIPA------KINLIP--FNPWPGCEYLCSDQKD-----IVTFSECIKRS------GYS 347 +NL P + ++ + F + ++++ GY Sbjct: 361 TAYKVDFVQLRNLNLDPQLYMKVAAESGALTNPARLASMGLKNFRKRLRKACPWLGFGYF 420 Query: 348 SPIRTPRGLD 357 +P R G + Sbjct: 421 NPYREEGGKE 430 >gi|290769880|gb|ADD61651.1| putative protein [uncultured organism] Length = 502 Score = 45.7 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 67/198 (33%), Gaps = 28/198 (14%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L CS+C+ K E L+ G ++ ++ S Sbjct: 101 ALCLHVAHTCNLNCSYCFAAQGKFH-----GE--------AGLMSFETGKRALDFLIEHS 147 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSL---SIASDSMGLSFSKRRITLSTSGF---VPNI 228 R+ + G GEPL NF+ K+ + +F R T++T+G I Sbjct: 148 GTRRNLEVDFFG-GEPLMNFEVCKQLVAYARSIEKEHNKNF---RFTMTTNGIGITDEVI 203 Query: 229 ARVGEEIG-VMLAISLH-AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286 +E V+L++ V++ R L + ++ + + Sbjct: 204 DWCNKECHNVVLSLDGRKEVNDRFRVDL---AGNGSYDRIVPKFQKLVKARGGQGYYMRG 260 Query: 287 VMLKGINDSPRDALNLIK 304 D +D ++ Sbjct: 261 TFTHHNVDFTKDLFHMAD 278 >gi|15921545|ref|NP_377214.1| tRNA-modifying enzyme [Sulfolobus tokodaii str. 7] gi|15622331|dbj|BAB66323.1| 358aa long conserved hypothetical protein [Sulfolobus tokodaii str. 7] Length = 358 Score = 45.7 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 66/199 (33%), Gaps = 17/199 (8%) Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKIS--NIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 G EG+ V I+ ++ + GEP +D + + + GL Sbjct: 108 IEEHKRAVSGYFGREGVDKNKVKEAITPKHVAISLTGEPTL-YDRLGELIKE-YHKRGL- 164 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 L TSG P+I EE L +SL A + ++ +++ Sbjct: 165 ----TTFLVTSGVRPDILASLEEEPTQLFVSLQAPNEFKHKLINRPIVANSWNLVMKTLE 220 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK-GIPAKINLIPFNPWPGCEYLCSD 330 P S M+KG N S DA ++++ P I + + Y S Sbjct: 221 ILPSFS--SPTVIRMTMIKGFNMSDEDAREFARLMEIAQPTYIEVKAYMHVGPSTYRLSK 278 Query: 331 QK-----DIVTFSECIKRS 344 +I F++ + Sbjct: 279 DAMPRHFEIKEFAKKLAEY 297 >gi|254166758|ref|ZP_04873612.1| radical SAM domain protein [Aciduliprofundum boonei T469] gi|197624368|gb|EDY36929.1| radical SAM domain protein [Aciduliprofundum boonei T469] Length = 366 Score = 45.7 bits (107), Expect = 0.013, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 64/201 (31%), Gaps = 50/201 (24%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C C +C +K+ R+ V+ A + +E +I S G I+ Sbjct: 48 CHAGCFYCPLSKEKMNRD---------VIFADEMPVHSDEDVLLEARLIDSKGTGITG-- 96 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST-SGFVPNIARVGE--------E 234 G+P+ D V + + D+ G + I L T SG I ++ + Sbjct: 97 ----GDPMEMVDRVIHYIHLLKDNFGE---EHHIHLYTASGSKEKIEKLADAGLDEIRFH 149 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 L + + R + +E +D E +L + D Sbjct: 150 PPPQLWTKMQGSIYEKRLN-------WAIESRMDTG-------------IEVPVLPDMKD 189 Query: 295 SPRDALNLIKILKGIPAKINL 315 + L+K + +NL Sbjct: 190 EL---IALVKFANDMGVFVNL 207 >gi|332701620|ref|ZP_08421708.1| Radical SAM domain protein [Desulfovibrio africanus str. Walvis Bay] gi|332551769|gb|EGJ48813.1| Radical SAM domain protein [Desulfovibrio africanus str. Walvis Bay] Length = 327 Score = 45.7 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 62/193 (32%), Gaps = 36/193 (18%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C +C LT E R D VG + + Sbjct: 29 CTMDCLYCEV---GRTAVLTTE---------RKAYVPAKAILDELAHWQEHVGLPLDAVT 76 Query: 184 MMGMGEPLCN--FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 + G GEPL N F V + RRI S V A + E V + Sbjct: 77 LGGSGEPLLNTEFGEVIR-------------GARRIMPSVPVAVLTNASLLVEPEVRREL 123 Query: 242 --------SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 SL ++ ++ + + + +A + A RI E +++ G+N Sbjct: 124 GQADIVLPSLDSLVDEEFAAVNRPAPGVTPQAVAEALLAFRS-EFAGRIFLEVLLVAGVN 182 Query: 294 DSPRDALNLIKIL 306 DS + L + Sbjct: 183 DSEENLRRLKAFV 195 >gi|289596447|ref|YP_003483143.1| Radical SAM domain protein [Aciduliprofundum boonei T469] gi|289534234|gb|ADD08581.1| Radical SAM domain protein [Aciduliprofundum boonei T469] Length = 353 Score = 45.7 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 64/201 (31%), Gaps = 50/201 (24%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C C +C +K+ R+ V+ A + +E +I S G I+ Sbjct: 35 CHAGCFYCPLSKEKMNRD---------VIFADEMPVHSDEDVLLEARLIDSKGTGITG-- 83 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST-SGFVPNIARVGE--------E 234 G+P+ D V + + D+ G + I L T SG I ++ + Sbjct: 84 ----GDPMEMVDRVIHYIHLLKDNFGE---EHHIHLYTASGSKEKIEKLADAGLDEIRFH 136 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 L + + R + +E +D E +L + D Sbjct: 137 PPPQLWTKMQGSIYEKRLN-------WAIESRMDTG-------------IEVPVLPDMKD 176 Query: 295 SPRDALNLIKILKGIPAKINL 315 + L+K + +NL Sbjct: 177 EL---IALVKFANDMGVFVNL 194 >gi|154504499|ref|ZP_02041237.1| hypothetical protein RUMGNA_02003 [Ruminococcus gnavus ATCC 29149] gi|153794981|gb|EDN77401.1| hypothetical protein RUMGNA_02003 [Ruminococcus gnavus ATCC 29149] Length = 257 Score = 45.7 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 40/238 (16%), Positives = 85/238 (35%), Gaps = 55/238 (23%) Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC + C FC+ T + K ++A+E+L + RS G G Sbjct: 42 GCPMRCQFCHNPDTWSMKTGTQMSADELLDKAWKYRSYWGKSGG---------------- 85 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEE 234 I + G GEPL D + + A G+ T+ TSG P ++ E Sbjct: 86 --ITVSG-GEPLLQIDFLLELFKKA-KEKGI-----HTTIDTSGAPFTREEPFFSKFEEL 136 Query: 235 IGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 + L + + + ++ IL + ++D R+ ++ + +V++ Sbjct: 137 MKYTDLLLLDIKHIDDEQHKILTGHTN----QNILDLARYLSDINK--PVWIRHVLVPER 190 Query: 293 NDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVT 336 +D+ L ++ + K+ ++P++ ++ ++ I Sbjct: 191 SDNDEYLKKLDAFIQTLSNVEKVEVLPYHTLGEYKWKELGMEYPLEGIEPPTEERIRN 248 >gi|332686598|ref|YP_004456372.1| pyruvate formate-lyase activating enzyme [Melissococcus plutonius ATCC 35311] gi|332370607|dbj|BAK21563.1| pyruvate formate-lyase activating enzyme [Melissococcus plutonius ATCC 35311] Length = 254 Score = 45.7 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 38/247 (15%), Positives = 87/247 (35%), Gaps = 60/247 (24%) Query: 123 GCSLTCSFCYT------GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176 GC + C FC+ G + +TA++I+ + L RS G+ G Sbjct: 31 GCRMRCEFCHNPDTWRIGAGGKL--VTADQIIEEALHYRSYWGEKGG------------- 75 Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARV 231 I + G GEPL + + + + + L S TL + G P ++ Sbjct: 76 -----ITVSG-GEPLLQIEFL---IDLFKKAKELGIST---TLDSCGKPFTREEPFFSQF 123 Query: 232 GEEIGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 E + + + + ++++ L N E ++D + + + + +V++ Sbjct: 124 NELLKYTDLVLLDIKHINSEKHKELTTFNN----ENILDLAHYLSEV--GQPVWIRHVLV 177 Query: 290 KGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIV 335 +D + L K +K + K ++P++ ++ + + Sbjct: 178 PFRSDYDEYLIELDKFVKTLNNVDKFEVLPYHTMGKYKWEDLKIPYPLEGIEPPTDERVK 237 Query: 336 TFSECIK 342 + + Sbjct: 238 NAKKILH 244 >gi|322382440|ref|ZP_08056337.1| coenzyme PQQ synthesis-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153584|gb|EFX45970.1| coenzyme PQQ synthesis-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 439 Score = 45.7 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 41/242 (16%), Positives = 86/242 (35%), Gaps = 27/242 (11%) Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168 + LC++ C+L+C +C+ K + R+++ G I+ Sbjct: 65 RQTYVKALCLNVAHTCNLSCEYCFASQGKYNGS-------------RAIMSYEVGKRAID 111 Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--P 226 ++ S + ++ G GEPL + VK+ ++ A R T +T+G + Sbjct: 112 YLLENSGHHRNLDVDFFG-GEPLMAWKVVKQIVAYARSKEKEYKKTFRFTFTTNGMLLND 170 Query: 227 NIARVGEEIGVMLAISL---HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283 + E + +SL V + LR + K + ++ + + + Sbjct: 171 EVTDFLNEEMYNVVLSLDGRKQVHDHLRK---TVTGKGSYDYIVPKFQEFVEKRGDKEYY 227 Query: 284 FEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK--DIVTFSECI 341 + D D ++ + G KI++ P P Y + + DI E + Sbjct: 228 VRGTYTRNNVDFTNDIFHIADL--GFD-KISMEPVICDPREPYALTAENLPDIYNQYEIL 284 Query: 342 KR 343 + Sbjct: 285 AK 286 >gi|218135329|ref|ZP_03464133.1| hypothetical protein BACPEC_03234 [Bacteroides pectinophilus ATCC 43243] gi|217990714|gb|EEC56725.1| hypothetical protein BACPEC_03234 [Bacteroides pectinophilus ATCC 43243] Length = 248 Score = 45.7 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 39/272 (14%), Positives = 90/272 (33%), Gaps = 50/272 (18%) Query: 97 IGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARS 156 +G IE+ + + +Q GC + C FC+ N+ E Sbjct: 1 MGKIHSIESFGSVDGPGVRFVIFTQ-GCHMRCQFCHNPD---TWNMEDGE---------- 46 Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216 + + ++ + K + + GEPL D + + + + + Sbjct: 47 ---EMSADDLLKQALRYKSYWKNKGGITVSGGEPLLQMDFL---IELFTKAKAKG---VN 97 Query: 217 ITLSTSGFV-----PNIARVGEEIGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 TL TSG P +R E + V + + + + ++ L + L+M Sbjct: 98 TTLDTSGNPFTRKEPFFSRFKELMEVTDLVMLDIKQIDDEKHKTLTGWSNANILDMA--- 154 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327 Y + + +V++ G +D L +K + ++ ++P++ +Y Sbjct: 155 --EYLSETGK-PMWIRHVLVPGGSDDDELLKRLDAFIKTLKNVDRVEVLPYHTLGTFKYE 211 Query: 328 ------------CSDQKDIVTFSECIKRSGYS 347 ++ I + + + Y+ Sbjct: 212 ELGIDYPLKGVNPPSKERIDNANRLLHTADYT 243 >gi|163751863|ref|ZP_02159078.1| pyruvate formate-lyase 1 activating enzyme [Shewanella benthica KT99] gi|161328279|gb|EDP99441.1| pyruvate formate-lyase 1 activating enzyme [Shewanella benthica KT99] Length = 220 Score = 45.7 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 32/244 (13%), Positives = 72/244 (29%), Gaps = 46/244 (18%) Query: 123 GCSLTCSFCYT----GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 GC + C +C+ + +E++ Q++ R L G G Sbjct: 3 GCLMRCQYCHNRDTWDLHGGQE-VEVKELMEQIISYRPFLEASGGGVTASGGEAILQAEF 61 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238 +S + E + D+ G + P I + + + Sbjct: 62 VSALFAECKQEG----------IHTCLDTNGF----------VRKYTPIIDELLDNTD-L 100 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 + + + + + L ++ LE Y ++ YV++ G D Sbjct: 101 VMLDIKHIDDQRHIDLTQVSNHRTLE-----FAQYLNKK-QQKTWIRYVVVGGFTDDIGA 154 Query: 299 ALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIKRS 344 A L LK + K+ L+P++ ++ + + + + Sbjct: 155 AQRLANFLKPMTNVEKVELLPYHELGKHKWEAMGETYQLDNISPPSSETMEQIKQVFVDT 214 Query: 345 GYSS 348 G + Sbjct: 215 GIKA 218 >gi|51595746|ref|YP_069937.1| pyruvate formate lyase-activating enzyme 1 [Yersinia pseudotuberculosis IP 32953] gi|108806669|ref|YP_650585.1| pyruvate formate lyase-activating enzyme 1 [Yersinia pestis Antiqua] gi|108812757|ref|YP_648524.1| pyruvate formate lyase-activating enzyme 1 [Yersinia pestis Nepal516] gi|145599586|ref|YP_001163662.1| pyruvate formate lyase-activating enzyme 1 [Yersinia pestis Pestoides F] gi|149366638|ref|ZP_01888672.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis CA88-4125] gi|153946839|ref|YP_001401556.1| pyruvate formate lyase-activating enzyme 1 [Yersinia pseudotuberculosis IP 31758] gi|161484775|ref|NP_670093.2| pyruvate formate lyase-activating enzyme 1 [Yersinia pestis KIM 10] gi|161511413|ref|NP_992578.2| pyruvate formate lyase-activating enzyme 1 [Yersinia pestis biovar Microtus str. 91001] gi|162421299|ref|YP_001606121.1| pyruvate formate lyase-activating enzyme 1 [Yersinia pestis Angola] gi|165924437|ref|ZP_02220269.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar Orientalis str. F1991016] gi|165939007|ref|ZP_02227560.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar Orientalis str. IP275] gi|166009871|ref|ZP_02230769.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar Antiqua str. E1979001] gi|166211440|ref|ZP_02237475.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar Antiqua str. B42003004] gi|167400062|ref|ZP_02305580.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419547|ref|ZP_02311300.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424126|ref|ZP_02315879.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470141|ref|ZP_02334845.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis FV-1] gi|218928529|ref|YP_002346404.1| pyruvate formate lyase-activating enzyme 1 [Yersinia pestis CO92] gi|229841350|ref|ZP_04461509.1| pyruvate formate lyase activating enzyme 1 [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843455|ref|ZP_04463601.1| pyruvate formate lyase activating enzyme 1 [Yersinia pestis biovar Orientalis str. India 195] gi|229903166|ref|ZP_04518279.1| pyruvate formate lyase activating enzyme 1 [Yersinia pestis Nepal516] gi|270486961|ref|ZP_06204035.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis KIM D27] gi|294503371|ref|YP_003567433.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis Z176003] gi|51589028|emb|CAH20646.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pseudotuberculosis IP 32953] gi|108776405|gb|ABG18924.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis Nepal516] gi|108778582|gb|ABG12640.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis Antiqua] gi|115347140|emb|CAL20033.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis CO92] gi|145211282|gb|ABP40689.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis Pestoides F] gi|149291012|gb|EDM41087.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis CA88-4125] gi|152958334|gb|ABS45795.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pseudotuberculosis IP 31758] gi|162354114|gb|ABX88062.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis Angola] gi|165913154|gb|EDR31778.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar Orientalis str. IP275] gi|165923497|gb|EDR40629.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar Orientalis str. F1991016] gi|165991267|gb|EDR43568.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar Antiqua str. E1979001] gi|166207211|gb|EDR51691.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar Antiqua str. B42003004] gi|166962288|gb|EDR58309.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050770|gb|EDR62178.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056975|gb|EDR66738.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229678936|gb|EEO75039.1| pyruvate formate lyase activating enzyme 1 [Yersinia pestis Nepal516] gi|229689802|gb|EEO81863.1| pyruvate formate lyase activating enzyme 1 [Yersinia pestis biovar Orientalis str. India 195] gi|229697716|gb|EEO87763.1| pyruvate formate lyase activating enzyme 1 [Yersinia pestis biovar Orientalis str. PEXU2] gi|262361411|gb|ACY58132.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis D106004] gi|262365052|gb|ACY61609.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis D182038] gi|270335465|gb|EFA46242.1| pyruvate formate-lyase 1-activating enzyme [Yersinia pestis KIM D27] gi|294353830|gb|ADE64171.1| pyruvate formate-lyase 1 activating enzyme [Yersinia pestis Z176003] gi|320015759|gb|ADV99330.1| pyruvate formate lyase activating enzyme 1 [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 244 Score = 45.7 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 40/249 (16%), Positives = 83/249 (33%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T EE++ + + R + G Sbjct: 27 GCLMRCLYCHNRDTWDTHGGKE--VTVEELVKEAVTYRHFMNASGGG------------- 71 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 V GE + + V+ A G+ L T+GFV P I + + Sbjct: 72 -----VTASGGEAILQAEFVRDWFR-ACHKEGI-----HTCLDTNGFVRRYDPVIDELLD 120 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L + + + LV ++ LE Y N + YV++ G + Sbjct: 121 ATD-LVMLDLKQMDDSIHQNLVGVSNHRTLE-----FARYLAKRNQ-KTWIRYVVVPGWS 173 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 D + A L + + + KI L+P++ ++ ++ + Sbjct: 174 DDDKSAHMLGEFTQNMSNIEKIELLPYHELGKHKWIAMGEEYKLDGVKPPTKEIMDRVKG 233 Query: 340 CIKRSGYSS 348 ++ G+ Sbjct: 234 ILEGYGHKV 242 >gi|167462543|ref|ZP_02327632.1| Radical SAM domain protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 422 Score = 45.7 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 41/242 (16%), Positives = 86/242 (35%), Gaps = 27/242 (11%) Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168 + LC++ C+L+C +C+ K + R+++ G I+ Sbjct: 48 RQTYVKALCLNVAHTCNLSCEYCFASQGKYNGS-------------RAIMSYEVGKRAID 94 Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--P 226 ++ S + ++ G GEPL + VK+ ++ A R T +T+G + Sbjct: 95 YLLENSGHHRNLDVDFFG-GEPLMAWKVVKQIVAYARSKEKEYKKTFRFTFTTNGMLLND 153 Query: 227 NIARVGEEIGVMLAISL---HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283 + E + +SL V + LR + K + ++ + + + Sbjct: 154 EVTDFLNEEMYNVVLSLDGRKQVHDHLRK---TVTGKGSYDYIVPKFQEFVEKRGDKEYY 210 Query: 284 FEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK--DIVTFSECI 341 + D D ++ + G KI++ P P Y + + DI E + Sbjct: 211 VRGTYTRNNVDFTNDIFHIADL--GFD-KISMEPVICDPREPYALTAENLPDIYNQYEIL 267 Query: 342 KR 343 + Sbjct: 268 AK 269 >gi|150015896|ref|YP_001308150.1| pyruvate formate-lyase activating enzyme [Clostridium beijerinckii NCIMB 8052] gi|149902361|gb|ABR33194.1| pyruvate formate-lyase activating enzyme [Clostridium beijerinckii NCIMB 8052] Length = 241 Score = 45.3 bits (106), Expect = 0.015, Method: Composition-based stats. Identities = 36/256 (14%), Positives = 82/256 (32%), Gaps = 40/256 (15%) Query: 98 GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157 G IE++ + + + V Q GC+L C +C+ Sbjct: 4 GNVHSIESMGLVDGPGIRVVVFLQ-GCALRCKYCHNPD---------------TWATNGG 47 Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217 P + + V GEPL + + ++L S G++ Sbjct: 48 EEYTPEQLVNKIERFKTYFASSGGGVTFSGGEPLRQPEFLLETLK-LCKSKGIN-----T 101 Query: 218 TLSTSGFVPNIARVGEEIGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275 + T+G+ E + + + + + + +N ++ + Sbjct: 102 CIDTAGY--GFGDYDEILKYTDLVLFDIKHFTPEGYKNITLMN----IDESLKFLE--AM 153 Query: 276 LSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPF-----NPWPGCEYLC 328 N ++ +V++ G+ D L K + IP K+ L+P+ N + G Sbjct: 154 KRNNTKMWIRHVVVPGLTDDVEHLKELKKYIDEIPNVEKVELLPYHLLGTNKYEGLGIKY 213 Query: 329 SDQKDIVTFSECIKRS 344 +++ + + + Sbjct: 214 P-LENVKAMDKELIKK 228 >gi|169335672|ref|ZP_02862865.1| hypothetical protein ANASTE_02092 [Anaerofustis stercorihominis DSM 17244] gi|169258410|gb|EDS72376.1| hypothetical protein ANASTE_02092 [Anaerofustis stercorihominis DSM 17244] Length = 454 Score = 45.3 bits (106), Expect = 0.015, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 18/139 (12%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 +C+ C+L C +C+ + + + + +I + Sbjct: 92 AMCLHVSHDCNLACRYCFASGGNFN--------------MKKEVMNIETAKKAIDFIISN 137 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIARV 231 G K+ V GEPL NFD VKK++ A + R TL+T+ + I + Sbjct: 138 SGNKVHLEVDFFGGEPLLNFDVVKKTVEYAKEEAKKHNKIFRFTLTTNCVLLNDEIIDYL 197 Query: 232 GEEI-GVMLAISLHAVSND 249 +E+ V+L++ ND Sbjct: 198 NKEMYNVVLSLDGRKEIND 216 >gi|168335509|ref|ZP_02693590.1| pyruvate formate-lyase activating enzyme [Epulopiscium sp. 'N.t. morphotype B'] Length = 243 Score = 45.3 bits (106), Expect = 0.015, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 81/239 (33%), Gaps = 39/239 (16%) Query: 96 CIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVL 152 IG +E+ + + +Q GC L C +C+ T + E Sbjct: 1 MIGKVHSVESCGTVDGPGIRYIIFTQ-GCPLRCQYCHNPDTWKG------SDGE------ 47 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 D + R I + G GEPL + V G+ Sbjct: 48 -----EMDSDALVKEILKYKAYMDRSNGGITISG-GEPLLQREFVTDIFKKV-KKKGI-- 98 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 + TSGF+P + ++G+ + + + + + + + LE + Sbjct: 99 ---HTCIDTSGFIP-LDKIGDILDYTDLVLLDIKSYNPA----IYKKVTGVALEPTLKFA 150 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327 + + + YV++ + D+ D +L K L + +I+++PF+ ++ Sbjct: 151 QEL--MKRNIPVWIRYVLVPDLTDNMEDIEDLAKYLITLSNVERIDILPFHKMGEYKWK 207 >gi|167748358|ref|ZP_02420485.1| hypothetical protein ANACAC_03102 [Anaerostipes caccae DSM 14662] gi|317472105|ref|ZP_07931437.1| pyruvate formate-lyase 1-activating enzyme [Anaerostipes sp. 3_2_56FAA] gi|167652350|gb|EDR96479.1| hypothetical protein ANACAC_03102 [Anaerostipes caccae DSM 14662] gi|316900509|gb|EFV22491.1| pyruvate formate-lyase 1-activating enzyme [Anaerostipes sp. 3_2_56FAA] Length = 241 Score = 45.3 bits (106), Expect = 0.015, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 81/236 (34%), Gaps = 37/236 (15%) Query: 97 IGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARS 156 +G +E++ + + V Q GC+L C FC+ N E + Sbjct: 3 VGHIHSMESMGLVDGPGIRSVVFFQ-GCALRCKFCH--------NPDTWE-------FQG 46 Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216 P ++ + G GEPL + + K+L G+ Sbjct: 47 GEEMTPEALVKRISRFKPYFKQNGGVTFSG-GEPLMQPEFLLKTLK-LCKQEGI-----H 99 Query: 217 ITLSTSGFVPN--IARVGEEIGVMLAIS-LHAVSNDLRNILVPINRKYPLEMLIDACRHY 273 + T+GF + V+L + + + + P+E I+ + Sbjct: 100 TCIDTAGFGQGDYDEILSYTDLVLLDLKEITGPAYE-------SMTGRPMERFIEFLK-- 150 Query: 274 PGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327 N ++ +V++ G+ DS L + + IP K+ L+P++ +Y Sbjct: 151 ALERNGTKLWIRHVVVPGLTDSKEHMQELKEYIDRIPNVEKVELLPYHLLGTNKYE 206 >gi|225174581|ref|ZP_03728579.1| Radical SAM domain protein [Dethiobacter alkaliphilus AHT 1] gi|225169708|gb|EEG78504.1| Radical SAM domain protein [Dethiobacter alkaliphilus AHT 1] Length = 454 Score = 45.3 bits (106), Expect = 0.015, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 72/191 (37%), Gaps = 22/191 (11%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC+ C+L C +C+ G N R L+ + ++ ++ S Sbjct: 95 ALCLHLAHDCNLRCKYCFAGEGHYGGN-------------RGLMPLETAKKAVDFLLEKS 141 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR-RITLSTSGF-VPN--IAR 230 GRK I G GEPL NF +K ++ + K + T++T+ +P + Sbjct: 142 KGRKHVEIDFFG-GEPLLNFQVLKDTVEY-GKARAQEMGKVLKFTVTTNALRMPGEVLEY 199 Query: 231 VGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 + E + ++L++ +D R ++P K + +++ C+ Sbjct: 200 LNREGMSIVLSLDGREEVHD-RMRVLPGGGK-SWQRVLENCKAVVKGRGGDNYYLRGTYT 257 Query: 290 KGINDSPRDAL 300 + D +D Sbjct: 258 RHNLDFSKDID 268 >gi|284007593|emb|CBA73174.1| pyruvate formate-lyase activating enzyme [Arsenophonus nasoniae] Length = 246 Score = 45.3 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 40/248 (16%), Positives = 84/248 (33%), Gaps = 54/248 (21%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T EE++ +V+ R + G Sbjct: 29 GCLMRCLYCHNRDTWDTHGGKE--ITVEELMKEVVSYRHFMNASGGG------------- 73 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IG 236 V GE + + V+ A G+ L T+GFV +V +E + Sbjct: 74 -----VTASGGEAILQAEFVRDWFR-ACQQQGI-----HTCLDTNGFVRRYDKVIDELLD 122 Query: 237 VM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 V + + L + +++ LV ++ LE Y ++ YV++ +D Sbjct: 123 VTDLVMLDLKQLDDNIHKNLVGVSNHRTLE-----FARYLAKR-GQKTWIRYVVVPSWSD 176 Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSEC 340 + A L + + + KI L+P++ ++ + + Sbjct: 177 DDQSAHLLGQFTRDMHNIEKIELLPYHELGKHKWLAMGEEYQLADIKPPTTETMERVKHI 236 Query: 341 IKRSGYSS 348 ++ G+ Sbjct: 237 LQGYGHKV 244 >gi|288918994|ref|ZP_06413336.1| nitrogenase cofactor biosynthesis protein NifB [Frankia sp. EUN1f] gi|288349640|gb|EFC83875.1| nitrogenase cofactor biosynthesis protein NifB [Frankia sp. EUN1f] Length = 672 Score = 45.3 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 34/252 (13%), Positives = 89/252 (35%), Gaps = 54/252 (21%) Query: 118 VSSQVGCSLTCSFC-------YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 V+ GC++ C++C + +L E + Sbjct: 80 VAVAPGCNIQCNYCNRKYDCANESRPGVTSDLLTPE-----------------DALAKVK 122 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNI 228 ++ S +++S + + G G+PL N ++L + + ++ LST+G ++ Sbjct: 123 LVASEIKQMSVLGIAGPGDPLANPKRTFRTLELVARD----CPDIKLCLSTNGLTLPDHV 178 Query: 229 ARVGEEIGVMLAISLHAVSNDLRNILVPI----NRKYPLEML--------IDACRHYPGL 276 R+ + + I+++ + ++ + P +KY ++ Sbjct: 179 DRIADLNVDHVTITINMIDPEVGERIYPWVAYKGKKYTGREASKILSERQLEGLAMLAER 238 Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGC-------EYLC 328 ++ VM+ G+ND + + + ++G+ A + N++P P Sbjct: 239 KILAKVN--SVMIPGVND--EHLVEVSQTVRGLGAFLHNVMPLVSAPEHGTVFGLAGQRG 294 Query: 329 SDQKDIVTFSEC 340 +++ + Sbjct: 295 PTPQELKALQDR 306 >gi|33152126|ref|NP_873479.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus ducreyi 35000HP] gi|33148348|gb|AAP95868.1| pyruvate formate-lyase activating enzyme [Haemophilus ducreyi 35000HP] Length = 244 Score = 45.3 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 36/243 (14%), Positives = 84/243 (34%), Gaps = 45/243 (18%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C +C+ R+ E + + Sbjct: 28 GCLMRCKYCH------NRDT---------WDLEGGTKISVETLMKEVVSYKHFMKATGGG 72 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV---ML 239 V GE + + V+ A + G++ L T+GFV + V +E+ ++ Sbjct: 73 VTASGGEAILQMEFVRDWFR-ACKAEGIN-----TCLDTNGFVRHYNAVVDEMLAVTDLV 126 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 + L +++++ L+ ++ K +D R+ + YV++ G D A Sbjct: 127 ILDLKQLNDEIHQDLIGVSNK----RTLDFARYLHKIHKQT--WIRYVVVPGYTD-DDSA 179 Query: 300 LNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIKRSG 345 L + ++ + K+ L+P++ ++ ++D+ I+ G Sbjct: 180 HKLGQFIQNMDNIEKVELLPYHRLGAHKWKTLGYKYELEDVLPPSKEDLERLKAIIESYG 239 Query: 346 YSS 348 ++ Sbjct: 240 HTV 242 >gi|224367530|ref|YP_002601693.1| NifB1 [Desulfobacterium autotrophicum HRM2] gi|223690246|gb|ACN13529.1| NifB1 [Desulfobacterium autotrophicum HRM2] Length = 411 Score = 45.3 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 60/167 (35%), Gaps = 21/167 (12%) Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD---SMGLSFSKRRITLSTSGFVPNIAR 230 IS + + G G+P N ++L + + + L + + G P I Sbjct: 70 EEKENISVVGIAGPGDPFANPQETMQTLRLVREKYPDIMLCLATNGL-----GIGPYIDE 124 Query: 231 VGEEIGVMLAISLHAVSNDLRNILVPINR--------KYPLEMLIDACRHYPGLSNARRI 282 + + + I+++AV D+ + R K + +L+D A I Sbjct: 125 LADLNVGHVTITVNAVDPDIAAKIYAWVRYKKRVRRAKEGVTILMDKQIEAIKKLKAHNI 184 Query: 283 TFEY--VMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEY 326 T + +++ G N+ + K + + I N IP+ + Sbjct: 185 TVKVNTILIPGKNEG--HIEAVAKRMGELGVDIFNCIPYYQTKESHF 229 >gi|193213830|ref|YP_001995029.1| radical SAM domain-containing protein [Chloroherpeton thalassium ATCC 35110] gi|193087307|gb|ACF12582.1| Radical SAM domain protein [Chloroherpeton thalassium ATCC 35110] Length = 316 Score = 45.3 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 36/202 (17%), Positives = 69/202 (34%), Gaps = 48/202 (23%) Query: 124 CSLTCSFCYTGTQKLVR---N-----LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175 C+ C +C R N ++ +EI+ ++ A V Sbjct: 27 CNWNCVYC---QLGRTRPLANERKEFVSTQEIVSEIREA----------------VCQHK 67 Query: 176 GRKISNIVMMGMGEP-LCN-----FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIA 229 +I I +G GEP L VK I + + T+G + ++ Sbjct: 68 PSEIDWISFVGSGEPTLHAGIGRMIREVKSFTEI------------PVAVITNGSLLSLP 115 Query: 230 RVGEEIGVMLAIS--LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 V ++ + L A S L + + +D + + + ++ E + Sbjct: 116 EVRADLQPADTVLPTLSAGSETLFRTIHRPHPDLTFAKHVDGLKAFRDEYHG-KLWVEVM 174 Query: 288 MLKGINDSPRDALNLIKILKGI 309 +LK +NDS + L IL+ + Sbjct: 175 LLKEVNDSEEELRKLADILRDL 196 >gi|238757610|ref|ZP_04618794.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia aldovae ATCC 35236] gi|238704115|gb|EEP96648.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia aldovae ATCC 35236] Length = 246 Score = 45.3 bits (106), Expect = 0.017, Method: Composition-based stats. Identities = 40/249 (16%), Positives = 82/249 (32%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T EE++ + + R + G Sbjct: 29 GCLMRCLYCHNRDTWDTHGGKE--VTVEELVKEAVTYRHFMNASGGG------------- 73 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 V GE + + V+ A G+ L T+GFV P I + + Sbjct: 74 -----VTASGGEAILQAEFVRDWFR-ACHEEGI-----HTCLDTNGFVRRYDPVIDELLD 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L + + + LV ++ LE Y N + YV++ G + Sbjct: 123 ATD-LVMLDLKQMDDSVHQNLVGVSNHRTLE-----FARYLAKRNQ-KTWIRYVVVPGWS 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 D + A L + + + KI L+P++ ++ + + Sbjct: 176 DDNKSAHMLGEFTQNMTNIEKIELLPYHELGKHKWVAMGEEYKLDGVKPPTAEIMDRVKG 235 Query: 340 CIKRSGYSS 348 ++ G+ Sbjct: 236 ILESYGHKV 244 >gi|313672572|ref|YP_004050683.1| radical sam domain protein [Calditerrivibrio nitroreducens DSM 19672] gi|312939328|gb|ADR18520.1| Radical SAM domain protein [Calditerrivibrio nitroreducens DSM 19672] Length = 309 Score = 45.3 bits (106), Expect = 0.017, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 66/188 (35%), Gaps = 19/188 (10%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L C +C G + N R D + I + Sbjct: 27 CNLDCIYCEVGKTTRLTNK------------RRSFIDLDLMFKEFEQAYSHLKDHIDVVT 74 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI-S 242 + G GEP N D L + S L+ S + N + + L + S Sbjct: 75 ITGAGEPTLNSD-----LHKIIKEIKKVISHPLALLTNSTLIDNDDVQNALMDLDLIVPS 129 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 + A+S ++ + +++ + ++ A + + N +I E + +KGIND+ + L Sbjct: 130 VDAISLEVIKKINKPHKRLNWDNILKALKDFSHQYNG-KIFIETLFVKGINDNEEEFNRL 188 Query: 303 IKILKGIP 310 K + Sbjct: 189 ADYFKELK 196 >gi|119872955|ref|YP_930962.1| radical SAM domain-containing protein [Pyrobaculum islandicum DSM 4184] gi|119674363|gb|ABL88619.1| Radical SAM domain protein [Pyrobaculum islandicum DSM 4184] Length = 266 Score = 45.3 bits (106), Expect = 0.017, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 79/231 (34%), Gaps = 53/231 (22%) Query: 123 GCSLTCSFCYTGT----------QKLV--RNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 GC+ C +C L R+LT E++ V S L + E + G Sbjct: 22 GCNYVCPWCIRRLTPWDHHLPDAGGLKTRRHLTLGELVEVV----SGLRERGAVEAVLGG 77 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230 P+V ++S +V G + + I + G S S+ + + Sbjct: 78 GEPTVDPELSQVVKTLAG---------LR-VRILT--NGFSISEELLGV----------- 114 Query: 231 VGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 + + +S+ + L + PL ++ + + FE V++ Sbjct: 115 LRSCPACEVVVSVKTLDPA--RHLAYTGK--PLGPVLANIKRLIEA--GVAVKFETVLIP 168 Query: 291 GINDSPRDALNLIKIL---KGIPAKINLI--PFNPWPGCEYLCSDQKDIVT 336 G+ND D + K + G A LI P P PG + +++ Sbjct: 169 GLND-VEDVEEIAKYIGEVAGPDAV--LIIDPLIPIPGTPWRRPAPEEVEE 216 >gi|119896814|ref|YP_932027.1| nitrogen fixation protein [Azoarcus sp. BH72] gi|119669227|emb|CAL93140.1| nitrogen fixation protein [Azoarcus sp. BH72] Length = 498 Score = 45.3 bits (106), Expect = 0.017, Method: Composition-based stats. Identities = 33/208 (15%), Positives = 82/208 (39%), Gaps = 29/208 (13%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C++C N + ++ +V+ P + + + + +++ + Sbjct: 66 CNIQCNYCNRKYD--CSNESRPGVVSEVM--------SPDQAVKKTLAVAAAIPQMTVLG 115 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVMLAI 241 + G G+PL N + ++ S+ ++ +ST+G ++ + + + I Sbjct: 116 IAGPGDPLANPERTFETFRRLSEEA----PDIKLCVSTNGLSLPESVDELAKHNIDHVTI 171 Query: 242 SLHAVSNDLRNILVPI----NRK-YPLEMLIDACRHYPG-----LSNARRITFEYVMLKG 291 +++ V ++ + P N++ + +E S + VM+ G Sbjct: 172 TINCVDPEIGAKIYPWIFWENKRIFGVEGAKILIEQQQKGLEMLTSRGILVKVNSVMIPG 231 Query: 292 INDSPRDALNLIKILKGIPAKI-NLIPF 318 IND + KI+K A + N++P Sbjct: 232 IND--EHLKEVSKIVKAKGAFLHNVMPL 257 >gi|28211811|ref|NP_782755.1| transcriptional regulatory protein [Clostridium tetani E88] gi|28204253|gb|AAO36692.1| transcriptional regulatory protein [Clostridium tetani E88] Length = 453 Score = 45.3 bits (106), Expect = 0.017, Method: Composition-based stats. Identities = 40/202 (19%), Positives = 75/202 (37%), Gaps = 25/202 (12%) Query: 110 EKSRGTLCVSSQVGCSLTCSFCYTGTQ--KLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167 E LC++ C+L C +C+ K R L +I G + I Sbjct: 91 ESYIKALCLNIAHDCNLRCKYCFADEGEYKGKRELMTADI---------------GKKAI 135 Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FV 225 + ++ S R + + G GEPL FD VK+ + A R T++T+G Sbjct: 136 DFVIKNSGPRNHIEVDLFG-GEPLIAFDTVKEIVEYAKKEEKKHNKVIRFTMTTNGTLLN 194 Query: 226 PNIARVGEEI--GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-I 282 I + +E ++L+I ND R + N+ + ++ + + + + Sbjct: 195 DEIMKYIDENMGNIVLSIDGRKEVND-RVRITRDNKG-SYDKILPKIKSMVKMRDKDKQY 252 Query: 283 TFEYVMLKGINDSPRDALNLIK 304 + D D ++L+ Sbjct: 253 YVRGTFTRENLDFFNDIMHLVN 274 >gi|326798118|ref|YP_004315937.1| radical SAM protein [Sphingobacterium sp. 21] gi|326548882|gb|ADZ77267.1| Radical SAM domain protein [Sphingobacterium sp. 21] Length = 434 Score = 45.3 bits (106), Expect = 0.017, Method: Composition-based stats. Identities = 54/286 (18%), Positives = 105/286 (36%), Gaps = 47/286 (16%) Query: 42 IYVRGIRDFQGMSDISQEVRHLL---NQHFSIIYPEIVD----EKISCDGTRKWLLRFPA 94 +Y +F + ++ +R LL ++I + K+ DG +++R Sbjct: 19 LYNALTNNFMIIQEL---LRDLLLAAKAEYNIEGLADIHPTFYRKLIDDG---FIVRAEV 72 Query: 95 RCIGGPVEI-ETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI-LLQVL 152 + +I E V + K L ++ + C+ C +CY K + E+I + V Sbjct: 73 DEVAKVRKIREEVDLMNKDEFILTINPTMNCNFNCWYCYESHIK---DSKMEDITIDHV- 128 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK----SLSIASDSM 208 + I +V K +I G GEPL + V K Sbjct: 129 -----------KDFIRNVVSERPSLKYFSIAWFG-GEPLLQYRRVVKPIQEFCKYFLSEH 176 Query: 209 GLSFSKRRITLSTSGFV--PNIARVGEEIG---VMLAISLHAVSNDLRNILVPINRKYP- 262 G+ FS + +T+GF+ + ++ E + + + V ++ + Y Sbjct: 177 GIKFSA---SFTTNGFLINKEMIKLFRETNASSFQITLDGNRVLHNAVRFVNSKKGSYDE 233 Query: 263 -LEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 ++ ++ CR ++ RI + L+GI D D L I + Sbjct: 234 IIQNILALCRAGFFVA--LRINYTKTNLEGIEDIMEDIKGLEDIYR 277 >gi|297618477|ref|YP_003703636.1| radical SAM protein [Syntrophothermus lipocalidus DSM 12680] gi|297146314|gb|ADI03071.1| Radical SAM domain protein [Syntrophothermus lipocalidus DSM 12680] Length = 468 Score = 45.3 bits (106), Expect = 0.017, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 80/233 (34%), Gaps = 37/233 (15%) Query: 79 KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKL 138 + + D R +L EI E LC++ C+L C +C+ Sbjct: 77 QEARD--RGYLFT--------AQEIPCFAFDEMPVKALCLNVAHKCNLRCRYCFAAQGSF 126 Query: 139 VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVK 198 EE+L + G ++ ++ K I G GEPL N D V+ Sbjct: 127 ----GGEEML---------MTSEVGQRAVDFLLANCGQVKNLEIDFFG-GEPLLNLDVVR 172 Query: 199 KSLSI---ASDSMGLSFSKRRITLSTSGFVPNIAR----VGEEIGVMLAISLHAVSNDLR 251 ++ +D +G + TL+T+ + + E I ++L++ ND Sbjct: 173 DTVRYGKKCADKLGKTI---NFTLTTNAVLLTEEIMDFLLAEHIALILSLDGRQEVND-- 227 Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 V + K ++++ N K D RD +LI+ Sbjct: 228 ACRVSSSGKGSYDLVLPRI-QMAVAKNPHSYYVRGTFTKKNLDFGRDLEHLIE 279 >gi|313672636|ref|YP_004050747.1| radical sam domain protein [Calditerrivibrio nitroreducens DSM 19672] gi|312939392|gb|ADR18584.1| Radical SAM domain protein [Calditerrivibrio nitroreducens DSM 19672] Length = 295 Score = 45.3 bits (106), Expect = 0.018, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 80/207 (38%), Gaps = 36/207 (17%) Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR-RITLS 220 P + S ++ + + G G+PL N +N K+ + ++S R+ LS Sbjct: 71 PEEAFERFKCVKSKINDLTVVGIAGPGDPLANIENTMKTFELIR-----NYSNNIRLCLS 125 Query: 221 TSG-----FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPI----NRKYPLEMLIDACR 271 T+G ++ ++ ++G E + I+++ V + + + + Y + Sbjct: 126 TNGLMLPYYIKDLVKLGVE---HITITINTVDEKIGSKIYRFIKFNGKTYKGVEASEILY 182 Query: 272 HYP------GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI-NLIPF-NPWPG 323 +S + V++ GIND + ++ +++K I N+IP NP Sbjct: 183 DRQLEGLRMAVSMGLIVKINTVLIPGIND--ANIPDISRMIKREGGFIHNIIPLINPADN 240 Query: 324 CEY------LCSDQKDIV--TFSECIK 342 Y + K+I F ++ Sbjct: 241 STYFAKEKVREPEAKEIEFARFQATLE 267 >gi|238792408|ref|ZP_04636042.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia intermedia ATCC 29909] gi|238728334|gb|EEQ19854.1| Pyruvate formate-lyase 1-activating enzyme [Yersinia intermedia ATCC 29909] Length = 246 Score = 45.3 bits (106), Expect = 0.018, Method: Composition-based stats. Identities = 40/249 (16%), Positives = 83/249 (33%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T EE++ + + R + G Sbjct: 29 GCLMRCLYCHNRDTWDTHGGKE--VTVEELVKEAITYRHFMNASGGG------------- 73 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 V GE + + V+ A +G+ L T+GFV P I + + Sbjct: 74 -----VTASGGEAILQAEFVRDWFR-ACHEVGI-----HTCLDTNGFVRRYDPVIDELLD 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L + + + LV ++ LE Y N + YV++ G + Sbjct: 123 ATD-LVMLDLKQMDDSVHQNLVGVSNHRTLE-----FARYLAKRNQ-KTWIRYVVVPGWS 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSE 339 D + A L + + + KI L+P++ ++ + + Sbjct: 176 DDDKSAHMLGEFTQNMTNIEKIELLPYHELGKHKWVAMGEEYKLDGVKPPTAEIMDRVKG 235 Query: 340 CIKRSGYSS 348 ++ G+ Sbjct: 236 ILESYGHKV 244 >gi|308186250|ref|YP_003930381.1| pyruvate formate lyase activating enzyme 1 [Pantoea vagans C9-1] gi|308056760|gb|ADO08932.1| pyruvate formate lyase activating enzyme 1 [Pantoea vagans C9-1] Length = 246 Score = 45.3 bits (106), Expect = 0.018, Method: Composition-based stats. Identities = 34/245 (13%), Positives = 75/245 (30%), Gaps = 48/245 (19%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + ++ E ++ VL R + G G Sbjct: 29 GCLMRCLYCHNRDTWDTHGGKE--ISVEALMADVLSYRHFMNASGGGVTASGGEAILQAE 86 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 + + E + D+ G + P I + + Sbjct: 87 FVRDWFRACKAEG----------IHTCLDTNGF----------VRRYDPVIDELLDVTD- 125 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 ++ I L +++D+ ILV ++ L+ Y R +V++ G +D Sbjct: 126 LVMIDLKQMNDDVHQILVGVSNHRTLD-----FARYLQKKGK-RTWIRFVVVPGYSDDDD 179 Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKR 343 A L + + + KI L+P++ ++ ++ + + Sbjct: 180 TAHRLGEFTRDMENVEKIELLPYHELGKHKWIAMGEEYKLDGVKPPGKETMERVKNILAS 239 Query: 344 SGYSS 348 G+ Sbjct: 240 YGHEV 244 >gi|313893341|ref|ZP_07826915.1| six-Cys-in-45 modification radical SAM protein [Veillonella sp. oral taxon 158 str. F0412] gi|313442110|gb|EFR60528.1| six-Cys-in-45 modification radical SAM protein [Veillonella sp. oral taxon 158 str. F0412] Length = 469 Score = 45.3 bits (106), Expect = 0.018, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 19/114 (16%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQ---KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMV 171 LC++ C+L C +C+ + R L+ ++ ++ Sbjct: 98 ALCLNIAHDCNLACKYCFASQGDYGGVKR---------------ELMSFDVAKRAVDFLI 142 Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225 S R+ I G GEPL N+D VK+++ ++TL+T+G + Sbjct: 143 KMSGPRQHCEIDFFG-GEPLLNWDVVKQTVEYIESIQEQHNKIFKLTLTTNGML 195 >gi|56476667|ref|YP_158256.1| quinohemoprotein amine dehydrogenase, putative SAM-radical dependentactivating subunit [Aromatoleum aromaticum EbN1] gi|56312710|emb|CAI07355.1| quinohemoprotein amine dehydrogenase, putative SAM-radical dependentactivating subunit [Aromatoleum aromaticum EbN1] Length = 480 Score = 45.3 bits (106), Expect = 0.018, Method: Composition-based stats. Identities = 46/235 (19%), Positives = 74/235 (31%), Gaps = 35/235 (14%) Query: 62 HLLNQHF-SIIYPEIVDEKISCDGTRKWL--LRFPARCIGGPVEIETVYIPEKSRGTLCV 118 L Q F PE+V + + K L LR I P T+ + Sbjct: 56 EELQQRFLERESPELVADAVED---LKSLGVLRSDPAVPDHGPGISVTEFPLS---TIVL 109 Query: 119 SSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 + GC+L+C++C +LT L + +E ++ R Sbjct: 110 NVNTGCNLSCTYC------YKEDLTTPSKGD-------KLSLETAKQGVELLLREGAKRD 156 Query: 179 ISNIVMMGMGEPLCNFDNVKKSL------SIASDSMGLSFS-KRRITLSTSGFVPNIARV 231 N+V G GEPL N V +++ + GL S TL T V Sbjct: 157 RVNVVFFG-GEPLTNMP-VIRAVTAYAEQRCREEGKGLDLSLTTNATLLTEEIVDYFNE- 213 Query: 232 GEEIGVMLAISLHAVSNDLRNILVPINRKYPL--EMLIDACRHYPGLSNARRITF 284 G+ +++ +D R + Y + Y R+T Sbjct: 214 -HRFGISISMDGPQAIHDKRRKTIGGKGTYEVVAAKTRMLLSRYTSRPVGARVTL 267 >gi|332364333|gb|EGJ42107.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis SK355] Length = 267 Score = 45.3 bits (106), Expect = 0.019, Method: Composition-based stats. Identities = 41/267 (15%), Positives = 80/267 (29%), Gaps = 81/267 (30%) Query: 123 GCSLTCSFCY-------------------TGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163 GC L C +C + T R + EEI+ +VL R + G Sbjct: 39 GCPLRCPWCSNPESQQFRPEPMLDATTKKSITMGEER--SVEEIINEVLKDRDFYEESGG 96 Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223 + G I + K++ A+ G+ + T+ Sbjct: 97 GLTLSGGEIFAQFE-------------------FAKAILKAAKEKGI-----HTAIETTA 132 Query: 224 FVPNIARVGEEIGV--MLAISL-------HAVSNDLRNILVPINRKYPLEMLIDACRHYP 274 FV + + + I + L H ++N L+ N Y Sbjct: 133 FVEH-EKFVDLIQYVDFIYTDLKHYNSVNHRKVTGVKNELIVQNIHY------------- 178 Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEY------- 326 ++ + I ++ NDS DA + + + L+PF+ + +Y Sbjct: 179 AFTHQKTIVLRIPVIPDFNDSLEDAERFATLFNELSINQVQLLPFHQFGENKYKLLGRKY 238 Query: 327 -----LCSDQKDIVTFSECIKRSGYSS 348 +D+ + + + G + Sbjct: 239 AMEDVKALHPEDLFEYQDVFLKHGINC 265 >gi|298368431|ref|ZP_06979749.1| pyruvate formate-lyase 1-activating enzyme [Neisseria sp. oral taxon 014 str. F0314] gi|298282434|gb|EFI23921.1| pyruvate formate-lyase 1-activating enzyme [Neisseria sp. oral taxon 014 str. F0314] Length = 253 Score = 45.3 bits (106), Expect = 0.019, Method: Composition-based stats. Identities = 44/254 (17%), Positives = 87/254 (34%), Gaps = 70/254 (27%) Query: 123 GCSLTCSFCYTGTQKLVRN-----------LTAEEILLQVLLARSLLGDFPGCEDIEGMV 171 GC + C +C+ R+ +T E+++ QV+ R L G G Sbjct: 34 GCLMRCLYCH------NRDTWDFHTDKCQEMTVEQVMKQVMSYRHYLEATGGGVTATGG- 86 Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKK---SLSIASDSMGLSFSKRRITLSTSGFVPNI 228 EPL ++ V+ + G+ L T+G+ + Sbjct: 87 -----------------EPLLQYEFVRDWFTACR----EHGI-----HTCLDTNGYALHY 120 Query: 229 ARVGEEI--GVMLAI-SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFE 285 + E++ L + L + ++ +LV P ++ RH + R+ Sbjct: 121 DSILEDLLDHTNLVMLDLKQIDPEIHKVLV----GIPNTKTLNFARHLAERGQSTRV--R 174 Query: 286 YVMLKGINDSPRDALNLIKILKGIPAK--INLIPFNP-------WPGCEYL-----CSDQ 331 YV++ G D R A L + + + L+P++ G EY + Sbjct: 175 YVIVPGYTDDERSAHLLGGFIGDMENVGAVELLPYHELGAHKWALCGDEYKLKGVHPPPK 234 Query: 332 KDIVTFSECIKRSG 345 + ++ E ++ G Sbjct: 235 EVVLKIKEILEGYG 248 >gi|212697129|ref|ZP_03305257.1| hypothetical protein ANHYDRO_01695 [Anaerococcus hydrogenalis DSM 7454] gi|212675904|gb|EEB35511.1| hypothetical protein ANHYDRO_01695 [Anaerococcus hydrogenalis DSM 7454] Length = 461 Score = 45.3 bits (106), Expect = 0.019, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 77/224 (34%), Gaps = 27/224 (12%) Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168 + +C++ C+L+C +C+ R E I + D + I+ Sbjct: 91 RKTYLKAMCLNVSHTCNLSCEYCFAKEG---RYHGPEAI----------MTDEVAKKSID 137 Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD-SMGLSFSKRRITLSTSGFV-- 225 ++ S +I G GEPL N+D VK ++ A + TL+T+G + Sbjct: 138 FLLENSGSHYNLDIDFFG-GEPLLNWDLVKNTVDYARSKEEEFN-KHFNFTLTTNGMLLD 195 Query: 226 -PNIARVGEEIG-VMLAISLHAV-SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI 282 I + E + V+L++ ++ R + + + ++ + + Sbjct: 196 DEKIEYLNENMKNVVLSLDGRKEKHDEFRK---THDGRGSFDKIVPKFQKLVKARGDKEY 252 Query: 283 TFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 D D + + G + +L P +Y Sbjct: 253 YMRGTFTANNLDFTEDIKTYLDL--GFK-RTSLEPVVGNNEEDY 293 >gi|1171708|sp|P46044|NIFB_FRAAL RecName: Full=FeMo cofactor biosynthesis protein nifB gi|1084248|pir||JC4208 nitrogenase NifB chain - Frankia sp gi|497436|gb|AAC82975.1| NifB [Frankia alni] Length = 510 Score = 44.9 bits (105), Expect = 0.019, Method: Composition-based stats. Identities = 36/246 (14%), Positives = 86/246 (34%), Gaps = 36/246 (14%) Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 V+ GC++ C+FC R + + P + V+ S + Sbjct: 69 VAVAPGCNIQCNFC-------NRKFDCA---NESRPGVTSTLLTPEDALAKVNVVASEIK 118 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEI 235 ++S + + G G+PL N +++ + + ++ LST+G + R+ + Sbjct: 119 QMSVLGIAGPGDPLANPKPTFRTIELVARD----CPDIKLCLSTNGLRLPEFVDRIADLN 174 Query: 236 GVMLAISLHAVSNDLRNILVPI----NRKYPLEMLIDACRHYPGL------SNARRITFE 285 + I+++ + ++ + P ++Y Sbjct: 175 VDHVTITINMIDPEVGERIYPWVAWRGKRYTGREASKILSEQQLAGLAALTERKILCKVN 234 Query: 286 YVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPG-------CEYLCSDQKDIVTF 337 VM+ GIND + + + +KG+ A + N++P P +++ Sbjct: 235 SVMIPGIND--EHLVEVSRTVKGLGAFLHNVMPLVSAPEHGTVFGLTGQRGPTPQELKAL 292 Query: 338 SECIKR 343 + ++ Sbjct: 293 QDRCEQ 298 >gi|116753736|ref|YP_842854.1| radical SAM domain-containing protein [Methanosaeta thermophila PT] gi|116665187|gb|ABK14214.1| Radical SAM domain protein [Methanosaeta thermophila PT] Length = 299 Score = 44.9 bits (105), Expect = 0.019, Method: Composition-based stats. Identities = 37/246 (15%), Positives = 82/246 (33%), Gaps = 55/246 (22%) Query: 124 CSLTCSFC-------YTGTQKLV-RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSV 175 C++ C +C + R LT +E L +V + S Sbjct: 49 CNIQCKYCIRDFDCVNESRPGVTSRVLTPQEALERV------------------DEVLSK 90 Query: 176 GRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGE 233 I + + G GEPL N + ++L + + + +ST+G I + Sbjct: 91 YHYIKVVAVAGPGEPLAN-EETFETLRLVGEKY----PHLILCISTNGLLLPDRIEDLDR 145 Query: 234 EIGVMLAISLHAVSNDLRNILVPI------------NRKYPLEMLIDACRHYPGLSNARR 281 + ++L+AV + + K L+ + + Sbjct: 146 IGVTNITVTLNAVDPTIGEQIYDYVIYKGERYEGLEAAKILLDNQLKGIEEAVRRKKIVK 205 Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEY---LCSDQKDIVTF 337 + V++ GIND + ++ + +K + I N++P P ++ ++ Sbjct: 206 VNT--VLIPGIND--KHVFDIARKIKSMGVFIHNVMPL--IPQYKFAHIKPPTPEEKRAI 259 Query: 338 SECIKR 343 + + + Sbjct: 260 QDELSK 265 >gi|188579343|ref|YP_001922788.1| radical SAM domain protein [Methylobacterium populi BJ001] gi|179342841|gb|ACB78253.1| Radical SAM domain protein [Methylobacterium populi BJ001] Length = 367 Score = 44.9 bits (105), Expect = 0.020, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 55/146 (37%), Gaps = 12/146 (8%) Query: 225 VPNIARVGEEIGV----MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280 P+ R E + L I L AV+ ++R ++P LE A L Sbjct: 209 PPDDDRWFERMKASGIDALGIHLEAVTPEVRARIMPGKASVTLERYQAAFEAAVPLFGRG 268 Query: 281 RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTF 337 +++ Y++ G+ D+P L + + L I ++PF P G + Sbjct: 269 QVS-TYIL-AGLGDTPEAILAMAERLIAIGVYPFVVPFVPISGTPLESHPAPSPAFMHAI 326 Query: 338 SECIKRSGYSSPIRTPRGLDILAACG 363 E + + +R+ DI A CG Sbjct: 327 LEPLAAMLTGADLRST---DIKAGCG 349 >gi|21674359|ref|NP_662424.1| NifB protein [Chlorobium tepidum TLS] gi|21647536|gb|AAM72766.1| nifB protein [Chlorobium tepidum TLS] Length = 424 Score = 44.9 bits (105), Expect = 0.021, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 88/235 (37%), Gaps = 29/235 (12%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C++C + N I +VL P + IS + Sbjct: 30 CNIQCNYCNRKFDCMNEN-RPG-ITSKVL--------SPRQALYYLDNALKLSPNISVVG 79 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF--VPNIARVGEEIGVMLAI 241 + G G+P N + ++L + + + + ++T+G +P I + E + + Sbjct: 80 IAGPGDPFANPEETMETLRLVREKY----PEMLLCVATNGLDMLPYIEELAELQVSHVTL 135 Query: 242 SLHAVSNDLRNILVPINR--------KYPLEMLIDACRHYPGLSNARRIT--FEYVMLKG 291 +++A+ ++ + R + E+L++ +T +++ G Sbjct: 136 TINAIDPEIGQEIYAWVRYQKKMYRDRQAAELLLENQLAALQKLKRYGVTAKVNSIIIPG 195 Query: 292 INDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSG 345 +ND + + + + + + A I N +P+ + + D + + + +G Sbjct: 196 VND--QHVIEVARQVASMGADILNALPYYNTTETVFENIPEPDPMMVRKIQEEAG 248 >gi|237736168|ref|ZP_04566649.1| Fe-S oxidoreductase [Fusobacterium mortiferum ATCC 9817] gi|229421721|gb|EEO36768.1| Fe-S oxidoreductase [Fusobacterium mortiferum ATCC 9817] Length = 276 Score = 44.9 bits (105), Expect = 0.021, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 68/192 (35%), Gaps = 29/192 (15%) Query: 124 CSLTCSFC---YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 C++ C FC T L R E E + K Sbjct: 28 CNMNCIFCECGATKKLTLKR-----------------ERFKDPEEVKEEIKEVLKKIKPD 70 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM-- 238 I G GEP + D + + + + ++ + T+G + +V E+I Sbjct: 71 YITFSGSGEPTLSKD-IGEIIDWIKEHT-----DVKVCVITNGLLLEDGKVIEDIKKADL 124 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 + +L++V N + + + + + ++ R+ I E +++G+NDS Sbjct: 125 IIPTLNSVDNLIFKKINRPSVESDISQVMGGLRN-LSEKYRGEIYIETFIIEGLNDSDEH 183 Query: 299 ALNLIKILKGIP 310 ++K LK + Sbjct: 184 TERMVKFLKNLK 195 >gi|331269973|ref|YP_004396465.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum BKT015925] gi|329126523|gb|AEB76468.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum BKT015925] Length = 239 Score = 44.9 bits (105), Expect = 0.021, Method: Composition-based stats. Identities = 42/241 (17%), Positives = 82/241 (34%), Gaps = 39/241 (16%) Query: 93 PARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVL 152 + IG E++ + + V Q GC L CSFC+ Sbjct: 3 ESNLIGRIHSFESMGLVDGPGIRNVVFFQ-GCPLRCSFCHNPD---------------TW 46 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 P + + + + G GEPL + ++L + ++ Sbjct: 47 DFNGGYEISPEDLVKKIIRFKPYFKNNGGVTFSG-GEPLMQPKFLLEALKLCKENN---- 101 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVM--LAISLHAVSNDLRNIL--VPINRKYPLEMLID 268 + TSG+ + E + + + + + L V IN+ + +++ Sbjct: 102 --IHTAIDTSGY--GSEYLDELLKFTDLIILDIKHIDEHNFKSLTGVSINKLFNFIAILN 157 Query: 269 ACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY 326 + R+ +V++ GI DS +L I+K I KI L+P++ +Y Sbjct: 158 --------KSKCRVWIRHVVIPGITDSIEHIESLKSIIKTIRNVDKIELLPYHTLGSHKY 209 Query: 327 L 327 Sbjct: 210 E 210 >gi|332982863|ref|YP_004464304.1| pyruvate formate-lyase activating enzyme [Mahella australiensis 50-1 BON] gi|332700541|gb|AEE97482.1| pyruvate formate-lyase activating enzyme [Mahella australiensis 50-1 BON] Length = 243 Score = 44.9 bits (105), Expect = 0.022, Method: Composition-based stats. Identities = 40/268 (14%), Positives = 82/268 (30%), Gaps = 45/268 (16%) Query: 98 GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL-LQVLLARS 156 G IET+ + V Q GC L C +C+ N ++ +++ Sbjct: 5 GRIHSIETMGTVDGPGIRYVVFMQ-GCPLRCKYCH--------NRDTWDMSHGRIMSVDE 55 Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216 L+ D ++ V + GEP + V + Sbjct: 56 LMQDIKKYKNFMKYSGGG--------VTLTGGEPTLQWRFVAELFRRCKTE------GIH 101 Query: 217 ITLSTSGFVPNIARVGEEIGVM-LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275 L TSGFV +I R + L + + +R+ + + + +H Sbjct: 102 TALDTSGFV-DIERADTFLPYTDLVLLDIKEIDPVRHTELTGVSN---DKTLAFAQHLSE 157 Query: 276 LSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK--INLIPFNPWPGCEYLC----- 328 L YV++ G D P D +L + + + + ++P++ ++ Sbjct: 158 L--HIPTWIRYVLVPGYTDDPDDIRSLGRFISRLSNVELVEILPYHTMGVYKWEQLCVDY 215 Query: 329 -------SDQKDIVTFSECIKRSGYSSP 349 + + ++ S Sbjct: 216 PLKDVPVPTDEQAEAARKILRDFNISVR 243 >gi|257066501|ref|YP_003152757.1| Radical SAM domain-containing protein [Anaerococcus prevotii DSM 20548] gi|256798381|gb|ACV29036.1| Radical SAM domain protein [Anaerococcus prevotii DSM 20548] Length = 460 Score = 44.9 bits (105), Expect = 0.023, Method: Composition-based stats. Identities = 46/277 (16%), Positives = 94/277 (33%), Gaps = 45/277 (16%) Query: 42 IYVRGIRDFQGMSDI------SQE---VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRF 92 IY + ++ S++ +R + + + I + + K Sbjct: 16 IYSGSVHAVDDVTYDIIEKYESKDKEDIRKKIIEKYEISNDQFEEAYAE----VK---EL 68 Query: 93 PARCIGGPVEI-ETVYIPEKSRGT----LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147 + +I E + I +R T LC++ C+L+C +C+ K + I Sbjct: 69 EDEGLLFTDDIYEDLSIDITNRPTTIKALCLNVAHTCNLSCEYCFAKGGKYSG---PDAI 125 Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD- 206 + + I+ ++ S +I G GEPL NF VK+++ A Sbjct: 126 ----------MTIDVAKKAIDFLLANSGSHYNLDIDFFG-GEPLLNFALVKETVDYARSK 174 Query: 207 SMGLSFSKRRITLSTSGFV---PNIARVGEEIG-VMLAISLHAV-SNDLRNILVPINRKY 261 + TL+T+G + I + E + V+L++ + R L N K Sbjct: 175 EEEFN-KHFNFTLTTNGLLLDDEVIDYLNENMKNVVLSLDGRKEKHDQFRKTL---NGKG 230 Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 + ++ +++ + D D Sbjct: 231 SYDAIVPKFQNFVKKRGDKEYYMRGTFTANNLDFTED 267 >gi|145220155|ref|YP_001130864.1| nitrogenase cofactor biosynthesis protein NifB [Prosthecochloris vibrioformis DSM 265] gi|145206319|gb|ABP37362.1| nitrogenase cofactor biosynthesis protein NifB [Chlorobium phaeovibrioides DSM 265] Length = 420 Score = 44.9 bits (105), Expect = 0.023, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 63/179 (35%), Gaps = 19/179 (10%) Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221 PG + IS + + G G+P N D ++L + + + ++T Sbjct: 58 PGQALHYLKAAVELSPNISVVGIAGPGDPFANPDETMETLRLVRKEY----PEMLLCVAT 113 Query: 222 SG--FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKY-PLEMLIDACRHYPG--- 275 +G +P I + E + I+++A+ + + R + I+A G Sbjct: 114 NGLNLLPYIDELAELEVSHVTITINAIDPAVGAEIYAWVRHEKKMHRDIEAAELLIGKQL 173 Query: 276 ------LSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEYL 327 + +++ G+ND + + + + A I N +P+ + Sbjct: 174 EGLKELKARGITAKVNTIIIPGVNDH--HVETVARTVASLGADILNCLPYYNTKETVFE 230 >gi|305390399|gb|ADM52724.1| NifB [Paenibacillus sabinae] Length = 458 Score = 44.9 bits (105), Expect = 0.024, Method: Composition-based stats. Identities = 40/246 (16%), Positives = 87/246 (35%), Gaps = 46/246 (18%) Query: 124 CSLTCSFCYTGTQKLVR-----NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 C++ C++C R N + ++ +VL P + + + + + Sbjct: 42 CNIQCNYC-------NRKFDCVNESRPGVVSEVLT--------PEQAERKVKGVAAQLMQ 86 Query: 179 ISNIVMMGMGEPLCNFDNVKK-SLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEEI 235 +S + + G G+PL N D + + L S +TL +I R+ E Sbjct: 87 LSVVGIAGPGDPLANADKTFDTFARVRKHVPDVMLCLSTNGLTLY-----RHIDRIVELG 141 Query: 236 GVMLAISLHAVSNDLRNILVPI----NRKYPLEMLIDACRHYPGL------SNARRITFE 285 + I+++A+ D+ + P +Y + Sbjct: 142 INHVTITINAIDPDVGKEIYPWVFDEGVRYEGREAAALLISRQLQGVEALAKQGILVKVN 201 Query: 286 YVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEY-----LCSDQKDIVTFSE 339 +M+ G+ND + + + K +K + A + N+ P PG +Y +++ + Sbjct: 202 SIMIPGVND--QHLVEVSKKVKELGATLHNVTPLIIAPGSQYEKDGRKAPRPRELNALQQ 259 Query: 340 CIKRSG 345 + G Sbjct: 260 QLSEGG 265 >gi|325263731|ref|ZP_08130464.1| putative pyruvate formate-lyase activating enzyme [Clostridium sp. D5] gi|324030769|gb|EGB92051.1| putative pyruvate formate-lyase activating enzyme [Clostridium sp. D5] Length = 308 Score = 44.9 bits (105), Expect = 0.024, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 83/272 (30%), Gaps = 62/272 (22%) Query: 122 VGCSLTCSFC------------YTGTQKLVR-------NLTAE---EILLQVLLARSLLG 159 VGC L C VR N E+ LQ A + G Sbjct: 55 VGCMLCAKVCPHDAVTAYETKEEAEAFGFVRHDREKCDNCETHDCVEMCLQ--NALDITG 112 Query: 160 DFPGCEDIEGMVIPSVGRKISN--IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217 + +DI V I + G G+PL D V + L G++ Sbjct: 113 KWMTVDDIMEKVHRDASYYAGKGGITLSG-GDPLVYADFVTELLRRCKSE-GIN------ 164 Query: 218 TLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPL-----EMLIDACRH 272 T+ S + VM I L+ ++ + + + +++ R Sbjct: 165 TVLESELCVPARSL---EKVMPYIDLYLTD----IKIIDDQKHIEMTGVTNKQILENLR- 216 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILK--GIPAKINLIPFNPWPGCEYLC-- 328 G + + ++ G DS + + K K G A++N++P++ ++ Sbjct: 217 LIGRTCPEKACLRCPIIPGCTDSDENIHAIGKFCKENGF-ARVNILPYHKLGTTKHERLG 275 Query: 329 ----------SDQKDIVTFSECIKRSGYSSPI 350 + + ++ ++ I Sbjct: 276 SVYPLPDVQAPSDEQMQHVADILESYKIDCII 307 >gi|312868229|ref|ZP_07728429.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus parasanguinis F0405] gi|311095974|gb|EFQ54218.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus parasanguinis F0405] Length = 264 Score = 44.9 bits (105), Expect = 0.024, Method: Composition-based stats. Identities = 42/255 (16%), Positives = 86/255 (33%), Gaps = 64/255 (25%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + R T +++L + L R G+ G Sbjct: 37 GCQMRCQYCHNPDTWAMETNKSRERTVDDVLEEALRYRGFWGEKGG-------------- 82 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF-----VPNIARVG 232 I + G GE L D + +++ + + L TL T + + Sbjct: 83 ----ITVSG-GEALLQIDFL---IALFTKAQELGI---HCTLDTCALPFRNTPRYLEKFD 131 Query: 233 EEIGVM-LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291 + V L + ND R+ +V + I AC Y + + +V++ G Sbjct: 132 RLMAVTDLVLLDIKEINDERHKIVTSHTN----KTILACAKYLS-DIGKPVWIRHVLVPG 186 Query: 292 INDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDI--- 334 + D D + L K +K + K ++P++ ++ ++ + Sbjct: 187 LTDRDDDLIELGKFVKTLKNVDKFEILPYHTMGEFKWRELGIPYKLEGVKPPTKERVQNA 246 Query: 335 ------VTFSECIKR 343 ++ + +KR Sbjct: 247 KDLMETESYQDYLKR 261 >gi|158318603|ref|YP_001511111.1| nitrogenase cofactor biosynthesis protein NifB [Frankia sp. EAN1pec] gi|158114008|gb|ABW16205.1| nitrogenase cofactor biosynthesis protein NifB [Frankia sp. EAN1pec] Length = 655 Score = 44.9 bits (105), Expect = 0.024, Method: Composition-based stats. Identities = 35/230 (15%), Positives = 84/230 (36%), Gaps = 47/230 (20%) Query: 118 VSSQVGCSLTCSFC-------YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 V+ GC++ C++C + +L E + Sbjct: 84 VAVAPGCNIQCNYCNRKYDCANESRPGVTSDLLTPE-----------------DALAKVK 126 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNI 228 ++ S +++S + + G G+PL N ++L + + ++ LST+G ++ Sbjct: 127 LVASEIKQMSVLGIAGPGDPLANPKRTFRTLELVARD----CPDIKLCLSTNGLTLPDHV 182 Query: 229 ARVGEEIGVMLAISLHAVSNDLRNILVPI----NRKYPLEML--------IDACRHYPGL 276 R+ + I+++ + ++ + P +KY ++ Sbjct: 183 DRIAALNVDHVTITINMIDPEVGERIYPWVAYKGKKYTGREASKILSERQLEGLAMLAER 242 Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCE 325 ++ VM+ G+ND + + K ++G+ A + N++P P Sbjct: 243 KILAKVN--SVMIPGVND--EHLVEVSKTVRGLGAFLHNVMPLVSAPEHG 288 >gi|221198785|ref|ZP_03571830.1| radical SAM domain protein [Burkholderia multivorans CGD2M] gi|221181236|gb|EEE13638.1| radical SAM domain protein [Burkholderia multivorans CGD2M] Length = 370 Score = 44.9 bits (105), Expect = 0.024, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 55/143 (38%), Gaps = 16/143 (11%) Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 R+ L + L AV+ +R ++P PL + A R G+ +++ Y+ Sbjct: 224 FDRMKASGIDTLGMHLEAVTPAVRERIMPGKASVPLSRYMAAFRAAVGVFGRGQVS-TYI 282 Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFSE----C 340 + G+ DS L++ + L G+ ++PF P G + E Sbjct: 283 L-AGLGDSAAAILDMSRELIGLGVYPFVVPFVPISGTPLESHPAPSPDFMRAVLEPLGAM 341 Query: 341 IKRSGYSSPIRTPRGLDILAACG 363 ++ +G R DI A CG Sbjct: 342 LRDAGM-------RSADIKAGCG 357 >gi|221205046|ref|ZP_03578062.1| radical SAM domain protein [Burkholderia multivorans CGD2] gi|221174837|gb|EEE07268.1| radical SAM domain protein [Burkholderia multivorans CGD2] Length = 356 Score = 44.9 bits (105), Expect = 0.024, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 55/143 (38%), Gaps = 16/143 (11%) Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 R+ L + L AV+ +R ++P PL + A R G+ +++ Y+ Sbjct: 210 FDRMKASGIDTLGMHLEAVTPAVRERIMPGKASVPLSRYMAAFRAAVGVFGRGQVS-TYI 268 Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFSE----C 340 + G+ DS L++ + L G+ ++PF P G + E Sbjct: 269 L-AGLGDSAAAILDMSRELIGLGVYPFVVPFVPISGTPLESHPAPSPDFMRAVLEPLGAM 327 Query: 341 IKRSGYSSPIRTPRGLDILAACG 363 ++ +G R DI A CG Sbjct: 328 LRDAGM-------RSADIKAGCG 343 >gi|15601942|ref|NP_245014.1| pyruvate formate lyase-activating enzyme 1 [Pasteurella multocida subsp. multocida str. Pm70] gi|12720286|gb|AAK02161.1| Act [Pasteurella multocida subsp. multocida str. Pm70] Length = 246 Score = 44.9 bits (105), Expect = 0.024, Method: Composition-based stats. Identities = 37/240 (15%), Positives = 79/240 (32%), Gaps = 44/240 (18%) Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC + C +C+ T + +T EE++ +V+ R + G G + Sbjct: 29 GCLMRCQYCHNRDTWDLHAGKEITVEELMKEVVTYRHFMNASGGGVTASGGEAVLQAEFV 88 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 + + G+ L T+GFV N V +E+ + Sbjct: 89 RD---------------WFSACK----KEGI-----HTCLDTNGFVRNYDHVIDELLDVT 124 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 + L + L + + P + ++ Y N + YV++ G D+ D Sbjct: 125 DLVLLDLKQ-LNDKIHQNLIGVPNKRTLEFA-QYLAKRNQ-PVWIRYVVVPGYTDADEDI 181 Query: 300 LNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIKRSG 345 L +K + K+ L+P++ ++ ++ + ++ G Sbjct: 182 HLLGHFIKDMKNIEKVELLPYHRLGAHKWEAMGEKYELEEVNPPTKESLEHIKSILESYG 241 >gi|146329598|ref|YP_001210199.1| pyruvate formate-lyase activating enzyme [Dichelobacter nodosus VCS1703A] gi|146233068|gb|ABQ14046.1| pyruvate formate-lyase activating enzyme [Dichelobacter nodosus VCS1703A] Length = 249 Score = 44.9 bits (105), Expect = 0.024, Method: Composition-based stats. Identities = 34/246 (13%), Positives = 75/246 (30%), Gaps = 46/246 (18%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C +C+ R+ L E R Sbjct: 30 GCLMRCLYCH------NRDSWP-------LTTDKSEVTTVSKLMQEIKTYQHYLRASGGG 76 Query: 183 VMMGMGEPLCNFDNVKKSL-SIASDSMGLSFSKRRITLSTSGFV----PNIARVGEEIGV 237 V GEPL + + ++ L T+GF ++ R+ + Sbjct: 77 VTASGGEPLLQH----AFIADWFTACQEMNL---HTCLDTNGFARQYDHDLIRLLDHTD- 128 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 ++ + L ++ + +LV P + ++ R+ R+ YV++ +D Sbjct: 129 LVMLDLKQINPEKHKVLV----GVPNDKTLNFARYLQERGQKVRV--RYVVVPQYSDDED 182 Query: 298 DALNLIKILKGIPAK--INLIPFNPWPGCEY------------LCSDQKDIVTFSECIKR 343 A L K ++ + + L+P++ ++ + + E ++ Sbjct: 183 SAHLLGKFIEPMENVLEVELLPYHELGSHKWALFGDTNKLAGIHPPKPETMKKIKEILES 242 Query: 344 SGYSSP 349 G Sbjct: 243 YGKPVF 248 >gi|124485502|ref|YP_001030118.1| hypothetical protein Mlab_0679 [Methanocorpusculum labreanum Z] gi|124363043|gb|ABN06851.1| Radical SAM domain protein [Methanocorpusculum labreanum Z] Length = 310 Score = 44.9 bits (105), Expect = 0.024, Method: Composition-based stats. Identities = 36/221 (16%), Positives = 75/221 (33%), Gaps = 40/221 (18%) Query: 124 CSLTCSFCYTGTQ--KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 C++ C++C R EIL PG + S + I Sbjct: 51 CNIQCNYCVRDYDCVNESRPGVTSEILA------------PGDALERIDEVVSRMKHIKV 98 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVML 239 + + G G+PL N + ++L + + + +ST+G I + + + Sbjct: 99 VGIAGPGDPLAN-EETFETLRLVHEKY----PDVILCISTNGLLLPEKIDILEKYGVRNI 153 Query: 240 AISLHAVSNDLRNILVPI----NRKYP--------LEMLIDACRHYPGLSNARRITFEYV 287 ++L+A+ + + +KY L+ + +I Y Sbjct: 154 TVTLNAIDPAIGEKIYTFVEYGGKKYHGREAAELLLKNQMKGIEEAVKRKMLVKINTVY- 212 Query: 288 MLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEYL 327 + G+ND + + K + + N+IP P ++ Sbjct: 213 -IPGVND--QHIPEIAKKVGAMGVFNFNIIPL--IPQYKFK 248 >gi|322390044|ref|ZP_08063580.1| pyruvate formate-lyase activating enzyme [Streptococcus parasanguinis ATCC 903] gi|321143251|gb|EFX38693.1| pyruvate formate-lyase activating enzyme [Streptococcus parasanguinis ATCC 903] Length = 264 Score = 44.9 bits (105), Expect = 0.024, Method: Composition-based stats. Identities = 37/250 (14%), Positives = 79/250 (31%), Gaps = 54/250 (21%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C +C+ N + E + + I Sbjct: 37 GCQMRCQYCH--------NPDTWAM-----ETNKSRERTVDDVLEEALRYRGFWGQKGGI 83 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF-----VPNIARVGEEIGV 237 + G GE L D + +++ + + L TL T + + + V Sbjct: 84 TVSG-GEALLQIDFL---IALFTKAQELGI---HCTLDTCALPFRNTPRYLEKFDRLMAV 136 Query: 238 M-LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 L + ND R+ +V + I AC Y + + +V++ G+ D Sbjct: 137 TDLVLLDIKEINDERHKIVTSHTN----KTILACAKYLS-DIGKPVWIRHVLVPGLTDRD 191 Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDI-------- 334 D + L K +K + K ++P++ ++ ++ + Sbjct: 192 DDLIELGKFVKTLKNVDKFEILPYHTMGEFKWRELGIPYKLEGVKPPTKERVQNAKDLME 251 Query: 335 -VTFSECIKR 343 ++ + +KR Sbjct: 252 TESYQDYLKR 261 >gi|224418860|ref|ZP_03656866.1| hypothetical protein HcanM9_06250 [Helicobacter canadensis MIT 98-5491] gi|253828153|ref|ZP_04871038.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313142377|ref|ZP_07804570.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|253511559|gb|EES90218.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313131408|gb|EFR49025.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] Length = 307 Score = 44.9 bits (105), Expect = 0.024, Method: Composition-based stats. Identities = 36/249 (14%), Positives = 75/249 (30%), Gaps = 61/249 (24%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+ C +C + + +EIL + I ++ Sbjct: 28 CNYDCLYC--ELEGKKAQDSMQEILE------------VDTILTAIKEALDKFKNIQSLT 73 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI-- 241 + GEP + N+ + + D G T + + ++ V A Sbjct: 74 ITANGEPTL-YPNLYELMLRLEDIKG----------DTQTLLLTNGSLLWDLSVSRACLL 122 Query: 242 ------SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 SL A+S ++ + + LE ++ + + + E + +KG+ND Sbjct: 123 FDKVKFSLDAISQEIFKKIDRPIKNISLEQILQGIYQFSA-DFSGELYAEILFVKGVNDD 181 Query: 296 PRDALNLIKILKGIPAK--------------INLIPFNPWPGCEYLCSDQKDIVTFSECI 341 P++ + + L + K +N I Q+ + F Sbjct: 182 PKEVQKMARFLAPMQLKRLDIGSIDRPPAYRVNPI-------------SQESLENFEAIF 228 Query: 342 KRSGYSSPI 350 K G + Sbjct: 229 KSYGIPVFL 237 >gi|70607089|ref|YP_255959.1| tRNA-modifying enzyme [Sulfolobus acidocaldarius DSM 639] gi|68567737|gb|AAY80666.1| conserved protein [Sulfolobus acidocaldarius DSM 639] Length = 358 Score = 44.5 bits (104), Expect = 0.025, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 47/130 (36%), Gaps = 8/130 (6%) Query: 221 TSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280 TSG P+I EE L +S+ A + I+ E+ ++ + P S Sbjct: 170 TSGVRPDILASLEEEPTQLFVSIQAPNYKKHKIMNRPIVPNSWELFLETLKILPSFS--S 227 Query: 281 RITFEYVMLKGINDSPRDALNLIKILK-GIPAKINLIPFNPWPGCEYL-----CSDQKDI 334 M+KG N S DA + K+++ P I + + Y +I Sbjct: 228 PTVIRMTMIKGYNMSEEDAKDFAKLIELSQPTYIEVKSYMHVGPSTYRLTKDAMPKHNEI 287 Query: 335 VTFSECIKRS 344 FS+ + Sbjct: 288 REFSKILANY 297 >gi|226947090|ref|YP_002802163.1| nitrogenase cofactor biosynthesis protein [Azotobacter vinelandii DJ] gi|226722017|gb|ACO81188.1| Nitrogenase cofactor biosynthesis protein [Azotobacter vinelandii DJ] Length = 503 Score = 44.5 bits (104), Expect = 0.025, Method: Composition-based stats. Identities = 34/217 (15%), Positives = 75/217 (34%), Gaps = 33/217 (15%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C +C N + ++ +VL P + + + ++S + Sbjct: 67 CNIQCHYCNRKYD--CANESRPGVVSEVLT--------PEQAVKKVKAVAAAIPQMSVLG 116 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVMLAI 241 + G G+PL N + + S+ ++ +ST+G + + + + I Sbjct: 117 IAGPGDPLANPKRTLDTFRMLSEQA----PDIKLCVSTNGLALPECVEELAKHNIDHVTI 172 Query: 242 SLHAVSNDLRNILVPI------------NRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 +++ V ++ + P K +E + VM+ Sbjct: 173 TINCVDPEIGAKIYPWIYWNNKRIRGVKAAKILIEQQQKGLEMLVAR--GILVKVNSVMI 230 Query: 290 KGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCE 325 G+ND + KI+K A + N++P P Sbjct: 231 PGVND--EHLKEVSKIVKAKGAFLHNVMPLIAEPEHG 265 >gi|110802629|ref|YP_698492.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens SM101] gi|168211839|ref|ZP_02637464.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens B str. ATCC 3626] gi|168218087|ref|ZP_02643712.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens NCTC 8239] gi|110683130|gb|ABG86500.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens SM101] gi|170710218|gb|EDT22400.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens B str. ATCC 3626] gi|182379907|gb|EDT77386.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens NCTC 8239] Length = 235 Score = 44.5 bits (104), Expect = 0.026, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 87/235 (37%), Gaps = 36/235 (15%) Query: 98 GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLA 154 G +ET+ + + V Q GC + C+FC+ T + T EE++ ++ Sbjct: 4 GRIHSLETMGLVDGPGIRFVVFMQ-GCGIRCAFCHNPDTWCKDKGTEYTPEELVNKIKRF 62 Query: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSK 214 ++ G + G GEPL + + + L G+ Sbjct: 63 KTYFNASGGG-----------------VTFSG-GEPLLQPEFLLECLK-LCKKEGI---- 99 Query: 215 RRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274 TL T+G E ++ + + LV + P++ ++ + Sbjct: 100 -HTTLDTAGVGLGNYEEILEYVDLILFDVKETDPEKYKNLV----RVPIDKSLEFLK--V 152 Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327 S +++ +V++ G D+ D + + K + G+ K+ L+P++ +Y Sbjct: 153 AQSMNKKMWIRHVVVPGYTDNKEDLMRIKKFVDGLNNIEKVELLPYHVLGVNKYE 207 >gi|315427179|dbj|BAJ48793.1| tRNA-modifying enzyme [Candidatus Caldiarchaeum subterraneum] Length = 337 Score = 44.5 bits (104), Expect = 0.026, Method: Composition-based stats. Identities = 37/239 (15%), Positives = 72/239 (30%), Gaps = 39/239 (16%) Query: 124 CSLTCSFCYTGTQKLVRNL-------TAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176 C++ C FC+ L R EEIL +++ + L G Sbjct: 79 CNMMCVFCW-RFHTLNRVQPYDGEWDKPEEILERMIAEQRQLLSGFGGNPNVSKERFREA 137 Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236 + +I + GEP + + + + +AS ++ + + ++ Sbjct: 138 MEPMHIAISLDGEPTL-YPYLAEFIQLASSR-----GMTTFLVTNGTMPERLEELLQKAQ 191 Query: 237 VM-LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND- 294 L ISL+ + K E L+ + S R ++K +N Sbjct: 192 PTSLYISLYGPDKETHVKTCKPLIKDSWERLLKSLELMGRFSC--RKIIRLTLVKDVNMH 249 Query: 295 SPRDALNLIK-------ILKGIPAKINLIPFNPWPGCEYL-----CSDQKDIVTFSECI 341 SP LI+ KG + + ++I F+ + Sbjct: 250 SPEKYGALIRNASPDFVECKG---------YTHVGESQLRLKKENMPSLEEINKFAAEL 299 >gi|228990331|ref|ZP_04150297.1| Radical SAM domain protein [Bacillus pseudomycoides DSM 12442] gi|228769407|gb|EEM18004.1| Radical SAM domain protein [Bacillus pseudomycoides DSM 12442] Length = 468 Score = 44.5 bits (104), Expect = 0.026, Method: Composition-based stats. Identities = 42/242 (17%), Positives = 86/242 (35%), Gaps = 27/242 (11%) Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168 + LC++ C+L+C +C+ K + R+++ G I+ Sbjct: 94 RQTYVKALCLNVAHTCNLSCEYCFASQGKYNGS-------------RAIMSYEVGKRAID 140 Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--P 226 ++ S + +I G GEPL + VK+ ++ A R T +T+G + Sbjct: 141 YLLENSGHHRNLDIDFFG-GEPLMAWKVVKQIVAYARSKEKEYKKTFRFTFTTNGMLLND 199 Query: 227 NIARVGEEIGVMLAISL---HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283 I + + +SL V + LR + K E ++ + + + Sbjct: 200 EITDFLNKEMYNVVLSLDGRKEVHDHLRK---TVTGKGSYEYIVPKFQEFVKSRGDKEYY 256 Query: 284 FEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK--DIVTFSECI 341 D D ++ + G K+++ P P Y +++ DI E + Sbjct: 257 VRGTYTHNNVDFTNDIFHIADL--GFD-KLSMEPVICNPREPYALTEKDLPDIYNQYEIL 313 Query: 342 KR 343 + Sbjct: 314 AK 315 >gi|29376171|ref|NP_815325.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis V583] gi|227518800|ref|ZP_03948849.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis TX0104] gi|227553414|ref|ZP_03983463.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis HH22] gi|229545774|ref|ZP_04434499.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis TX1322] gi|229549964|ref|ZP_04438689.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis ATCC 29200] gi|255972746|ref|ZP_05423332.1| formate acetyltransferase activating enzyme [Enterococcus faecalis T1] gi|255975798|ref|ZP_05426384.1| formate acetyltransferase activating enzyme [Enterococcus faecalis T2] gi|256619111|ref|ZP_05475957.1| formate acetyltransferase activating enzyme [Enterococcus faecalis ATCC 4200] gi|256762547|ref|ZP_05503127.1| formate acetyltransferase activating enzyme [Enterococcus faecalis T3] gi|256853173|ref|ZP_05558543.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis T8] gi|256959027|ref|ZP_05563198.1| formate acetyltransferase activating enzyme [Enterococcus faecalis DS5] gi|256961880|ref|ZP_05566051.1| formate acetyltransferase activating enzyme [Enterococcus faecalis Merz96] gi|256965078|ref|ZP_05569249.1| formate acetyltransferase activating enzyme [Enterococcus faecalis HIP11704] gi|257079058|ref|ZP_05573419.1| formate acetyltransferase activating enzyme [Enterococcus faecalis JH1] gi|257082503|ref|ZP_05576864.1| formate acetyltransferase activating enzyme [Enterococcus faecalis E1Sol] gi|257085135|ref|ZP_05579496.1| formate acetyltransferase activating enzyme [Enterococcus faecalis Fly1] gi|257086696|ref|ZP_05581057.1| formate acetyltransferase activating enzyme [Enterococcus faecalis D6] gi|257089932|ref|ZP_05584293.1| formate acetyltransferase activating enzyme [Enterococcus faecalis CH188] gi|257416141|ref|ZP_05593135.1| formate acetyltransferase activating enzyme [Enterococcus faecalis AR01/DG] gi|257419343|ref|ZP_05596337.1| formate acetyltransferase activating enzyme [Enterococcus faecalis T11] gi|257422563|ref|ZP_05599553.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis X98] gi|293382946|ref|ZP_06628864.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis R712] gi|293389565|ref|ZP_06634022.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis S613] gi|294781698|ref|ZP_06747033.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis PC1.1] gi|300860342|ref|ZP_07106429.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TUSoD Ef11] gi|307270971|ref|ZP_07552254.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX4248] gi|307273177|ref|ZP_07554423.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0855] gi|307274911|ref|ZP_07556074.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX2134] gi|307278019|ref|ZP_07559103.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0860] gi|307289153|ref|ZP_07569109.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0109] gi|307291949|ref|ZP_07571818.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0411] gi|312899462|ref|ZP_07758792.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0470] gi|312903355|ref|ZP_07762535.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0635] gi|312907583|ref|ZP_07766574.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis DAPTO 512] gi|312910201|ref|ZP_07769048.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis DAPTO 516] gi|312951545|ref|ZP_07770441.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0102] gi|29343634|gb|AAO81395.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis V583] gi|227073795|gb|EEI11758.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis TX0104] gi|227177465|gb|EEI58437.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis HH22] gi|229304877|gb|EEN70873.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis ATCC 29200] gi|229309086|gb|EEN75073.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis TX1322] gi|255963764|gb|EET96240.1| formate acetyltransferase activating enzyme [Enterococcus faecalis T1] gi|255968670|gb|EET99292.1| formate acetyltransferase activating enzyme [Enterococcus faecalis T2] gi|256598638|gb|EEU17814.1| formate acetyltransferase activating enzyme [Enterococcus faecalis ATCC 4200] gi|256683798|gb|EEU23493.1| formate acetyltransferase activating enzyme [Enterococcus faecalis T3] gi|256711632|gb|EEU26670.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis T8] gi|256949523|gb|EEU66155.1| formate acetyltransferase activating enzyme [Enterococcus faecalis DS5] gi|256952376|gb|EEU69008.1| formate acetyltransferase activating enzyme [Enterococcus faecalis Merz96] gi|256955574|gb|EEU72206.1| formate acetyltransferase activating enzyme [Enterococcus faecalis HIP11704] gi|256987088|gb|EEU74390.1| formate acetyltransferase activating enzyme [Enterococcus faecalis JH1] gi|256990533|gb|EEU77835.1| formate acetyltransferase activating enzyme [Enterococcus faecalis E1Sol] gi|256993165|gb|EEU80467.1| formate acetyltransferase activating enzyme [Enterococcus faecalis Fly1] gi|256994726|gb|EEU82028.1| formate acetyltransferase activating enzyme [Enterococcus faecalis D6] gi|256998744|gb|EEU85264.1| formate acetyltransferase activating enzyme [Enterococcus faecalis CH188] gi|257157969|gb|EEU87929.1| formate acetyltransferase activating enzyme [Enterococcus faecalis ARO1/DG] gi|257161171|gb|EEU91131.1| formate acetyltransferase activating enzyme [Enterococcus faecalis T11] gi|257164387|gb|EEU94347.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis X98] gi|291079611|gb|EFE16975.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis R712] gi|291081182|gb|EFE18145.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis S613] gi|294451250|gb|EFG19717.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis PC1.1] gi|300849381|gb|EFK77131.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TUSoD Ef11] gi|306496947|gb|EFM66495.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0411] gi|306499862|gb|EFM69223.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0109] gi|306505416|gb|EFM74602.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0860] gi|306508359|gb|EFM77466.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX2134] gi|306510162|gb|EFM79186.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0855] gi|306512469|gb|EFM81118.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX4248] gi|310626611|gb|EFQ09894.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis DAPTO 512] gi|310630511|gb|EFQ13794.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0102] gi|310633231|gb|EFQ16514.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0635] gi|311289474|gb|EFQ68030.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis DAPTO 516] gi|311293332|gb|EFQ71888.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0470] gi|315027219|gb|EFT39151.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX2137] gi|315029337|gb|EFT41269.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX4000] gi|315034016|gb|EFT45948.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0017] gi|315037025|gb|EFT48957.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0027] gi|315145095|gb|EFT89111.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX2141] gi|315147312|gb|EFT91328.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX4244] gi|315150489|gb|EFT94505.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0012] gi|315152432|gb|EFT96448.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0031] gi|315155705|gb|EFT99721.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0043] gi|315158124|gb|EFU02141.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0312] gi|315160389|gb|EFU04406.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0645] gi|315164062|gb|EFU08079.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX1302] gi|315169778|gb|EFU13795.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX1342] gi|315172257|gb|EFU16274.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX1346] gi|315575819|gb|EFU88010.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0309B] gi|315577659|gb|EFU89850.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0630] gi|315580471|gb|EFU92662.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX0309A] gi|323480777|gb|ADX80216.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis 62] gi|327535181|gb|AEA94015.1| pyruvate formate-lyase activating enzyme [Enterococcus faecalis OG1RF] gi|329571652|gb|EGG53333.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX1467] Length = 254 Score = 44.5 bits (104), Expect = 0.027, Method: Composition-based stats. Identities = 40/247 (16%), Positives = 83/247 (33%), Gaps = 60/247 (24%) Query: 123 GCSLTCSFCYT------GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176 GC + C FC+ G+ V +T +E+L + L RS G+ G Sbjct: 31 GCRMRCQFCHNPDTWKIGSGGRV--VTTDEVLEEALRFRSYWGEKGG------------- 75 Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARV 231 I + G GEPL D + + + + TL T G P I++ Sbjct: 76 -----ITVSG-GEPLLQMDFL---IDLFKKAKAQGI---HTTLDTCGKPFTREEPFISQF 123 Query: 232 GEEIGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 E + L + + N+ +L + + +++ + + + +V++ Sbjct: 124 DELMKYTDLLLFDIKHIDNEQHKLLTTQSN----DNILEMATYLSEIDK--PVWIRHVLV 177 Query: 290 KGINDSPRDALNLIKILKGIPA--KINLIPFNPWP-------GCEY-----LCSDQKDIV 335 +D + L +K + K+ ++P++ G Y + Sbjct: 178 PQRSDYDEYLIRLDAFIKTLNNVDKVEVLPYHTMGKYKWEELGIPYPLEGIEPPKNDRVE 237 Query: 336 TFSECIK 342 + + Sbjct: 238 NAKKLLH 244 >gi|282901591|ref|ZP_06309510.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Cylindrospermopsis raciborskii CS-505] gi|281193517|gb|EFA68495.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Cylindrospermopsis raciborskii CS-505] Length = 248 Score = 44.5 bits (104), Expect = 0.027, Method: Composition-based stats. Identities = 45/276 (16%), Positives = 89/276 (32%), Gaps = 57/276 (20%) Query: 95 RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQV 151 + +G +ET + + +Q GC L C +C+ T K + T E++ ++ Sbjct: 7 QILGHIHSLETCGTVDGPGIRFVIFTQ-GCLLRCLYCHNPDTRDMKTGKETTVGELVTEI 65 Query: 152 LLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS 211 RS + G I G GEPL + V+ + L+ Sbjct: 66 EKYRSYMKFTGGGVTISG------------------GEPLLQPEFVR---EVFRQCQKLN 104 Query: 212 FSKRRITLSTSGFV-----PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEML 266 L TSGF ++ + V+L I + L +E Sbjct: 105 I---HTALDTSGFPDLTTSKSVLEFVDL--VLLDIKSFDPNTYL------HVTGVSIEPT 153 Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGC 324 + + ++ + F V++ + D + L K + + K+ ++PF+ Sbjct: 154 LRFAEYLQEINKPTWVRF--VLVPHVTDGNENVHQLAKFVSQLTNVEKVEILPFHKLGEY 211 Query: 325 EYL------------CSDQKDIVTFSECIKRSGYSS 348 ++ ++I + K G Sbjct: 212 KWHELGYHYELGNTIPPSLEEIEKVKDIFKHYGVKV 247 >gi|261367872|ref|ZP_05980755.1| pyruvate formate-lyase 1-activating enzyme [Subdoligranulum variabile DSM 15176] gi|282570678|gb|EFB76213.1| pyruvate formate-lyase 1-activating enzyme [Subdoligranulum variabile DSM 15176] Length = 255 Score = 44.5 bits (104), Expect = 0.028, Method: Composition-based stats. Identities = 35/264 (13%), Positives = 83/264 (31%), Gaps = 41/264 (15%) Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160 +ET + + + Q GC++ C +C+ + Sbjct: 11 HSVETFGLVDGPGVRYIIFLQ-GCAMRCQYCHNP---------------ETWAFTRDTEK 54 Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM---GLSFSKRRI 217 P + + R + + G GEPL D V + +A L S + Sbjct: 55 TPQEAFDAALRYRNYWRNNGGLTISG-GEPLLQMDFVSEVFRLARAKGIHTALDTSGQPF 113 Query: 218 TLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277 + ++ + E ++ + L + ++ L + K I A Y Sbjct: 114 APDNADWMARFDALLENTS-LVILDLKEIEDEKHKKLTGHSNKN-----ILAMAQYVAQ- 166 Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFN-------PWPGCEY-- 326 + + +V++ G+ D L ++ +P ++ ++P++ G Y Sbjct: 167 HGVPLWIRHVLVPGLTDDAEGLRQLDAFIRTLPTVRRVEVLPYHTLGLFKWKNLGIPYPL 226 Query: 327 ---LCSDQKDIVTFSECIKRSGYS 347 ++++ + + Y Sbjct: 227 EGVRVPTEEEVKAAEDLLHVRDYP 250 >gi|325843836|ref|ZP_08168045.1| radical SAM domain protein [Turicibacter sp. HGF1] gi|325489254|gb|EGC91633.1| radical SAM domain protein [Turicibacter sp. HGF1] Length = 329 Score = 44.5 bits (104), Expect = 0.028, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 70/217 (32%), Gaps = 43/217 (19%) Query: 107 YIPEKSRGTLCVS-SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCE 165 ++P GT +S GC++TCSFC Q Sbjct: 68 FMP----GTCILSIGSFGCNMTCSFC------------------QNYEISQHQPHSKTLP 105 Query: 166 DIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225 + I S + EP ++ V ++ + ++I + T+G++ Sbjct: 106 VEQLCQILSEQPNHVGVAFT-YNEPFMWYEYVYEAAKKIKQT----MPHQKIVMVTNGYI 160 Query: 226 PN--IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283 + ++ I M + R + + P+ I +N + Sbjct: 161 NQSPLMKLLPYIDAMNIDLKGYTNQYYRK--ICGAKLNPVLETIKLV------ANKVHLE 212 Query: 284 FEYVMLKGINDSPRDALNLIKILKGIPAKINL-IPFN 319 +++ NDS + + K + A IN IPF+ Sbjct: 213 ITTLLVSDENDSLEEVEEIAKFI----ASINPNIPFH 245 >gi|238019572|ref|ZP_04599998.1| hypothetical protein VEIDISOL_01441 [Veillonella dispar ATCC 17748] gi|237864271|gb|EEP65561.1| hypothetical protein VEIDISOL_01441 [Veillonella dispar ATCC 17748] Length = 491 Score = 44.5 bits (104), Expect = 0.028, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 19/114 (16%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQ---KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMV 171 LC++ C+L C +C+ + R L+ ++ ++ Sbjct: 120 ALCLNIAHDCNLACKYCFASQGDYGGVKR---------------ELMSFDVAKRAVDFLI 164 Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225 S R+ I G GEPL N+D VK+++ ++TL+T+G + Sbjct: 165 KMSGPRQHCEIDFFG-GEPLLNWDVVKQTVEYIESIQEKHNKIFKLTLTTNGML 217 >gi|313891888|ref|ZP_07825490.1| six-Cys-in-45 modification radical SAM protein [Dialister microaerophilus UPII 345-E] gi|313119663|gb|EFR42853.1| six-Cys-in-45 modification radical SAM protein [Dialister microaerophilus UPII 345-E] Length = 477 Score = 44.5 bits (104), Expect = 0.028, Method: Composition-based stats. Identities = 39/248 (15%), Positives = 87/248 (35%), Gaps = 28/248 (11%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 +C++ C+L C +C+ G + R L+ I+ ++ S Sbjct: 98 AICLNIAHDCNLRCKYCFAGQGGYGK-------------WRMLMSFDVARRAIDFLIAHS 144 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234 RK + G GEPL N+ ++++++ R++L+++G + + +V Sbjct: 145 GPRKHCEVDFFG-GEPLMNWHVIQQTVTYIRQKERKHNKIVRLSLTSNGMLLDKEKVKYL 203 Query: 235 IGVMLAISLHAVSNDLR---NILVPINRKY-PLEMLIDACRHYPGLSNARRITFEYVMLK 290 +++ L + R + + P + ++ ++ N K Sbjct: 204 NDNHISLIL--SIDGRREMHDRMRPGVHGEGTYDQIVKNLKYCVEHRNGEEYYVRGTFTK 261 Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK--DIVTFSECIKRSGYSS 348 D D +++ G PA +++ P G +Y + + I E + Sbjct: 262 YNLDFTTDVKDMVD--TGFPA-LSMEPVIGEEGTDYSITKEDLPAIKKEYEKLADFFIK- 317 Query: 349 PIRTPRGL 356 R G Sbjct: 318 --REEEGR 323 >gi|253582696|ref|ZP_04859917.1| pyruvate-formate lyase-activating enzyme [Fusobacterium varium ATCC 27725] gi|251835566|gb|EES64106.1| pyruvate-formate lyase-activating enzyme [Fusobacterium varium ATCC 27725] Length = 243 Score = 44.5 bits (104), Expect = 0.029, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 80/234 (34%), Gaps = 34/234 (14%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C FC+ N I + + + K + Sbjct: 29 GCPLRCKFCH--------NPDTWNISD------EKIRERAVETFEKVKKYKGYFGKKGGL 74 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLA 240 + G GEP D + + G++ + TSG++ + V E ++L Sbjct: 75 TVTG-GEPFLQADFILELFK-LCKEDGIN-----TVVDTSGYIFNEKVKEVLEYTDLVL- 126 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 + + A+ + L + LE + ++ +R+ +V++ GI D+ Sbjct: 127 LDIKAIDEKVYKELTGVE----LENTLKFAQYLKEK--GKRVWIRHVIVPGITDNDELLN 180 Query: 301 NLIKILKGIPA--KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYS--SPI 350 L + + + K+ L+P++ +Y K ++ E + + I Sbjct: 181 RLAEYVSNLDNVEKVELLPYHKLGEFKYKELGMKYVLEGVEELSKERLENAVTI 234 >gi|293375979|ref|ZP_06622239.1| radical SAM domain protein [Turicibacter sanguinis PC909] gi|292645416|gb|EFF63466.1| radical SAM domain protein [Turicibacter sanguinis PC909] Length = 329 Score = 44.5 bits (104), Expect = 0.030, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 70/217 (32%), Gaps = 43/217 (19%) Query: 107 YIPEKSRGTLCVS-SQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCE 165 ++P GT +S GC++TCSFC Q Sbjct: 68 FMP----GTCILSIGSFGCNMTCSFC------------------QNYEISQHQPHSKTLP 105 Query: 166 DIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225 + I S + EP ++ V ++ + ++I + T+G++ Sbjct: 106 VEQLCQILSEQPNHVGVAFT-YNEPFMWYEYVYEAAKKIKQT----MPHQKIVMVTNGYI 160 Query: 226 PN--IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283 + ++ I M + R + + P+ I +N + Sbjct: 161 NQSPLMKLLPYIDAMNIDLKGYTNQYYRK--ICGAKLNPVLETIKLV------ANKVHLE 212 Query: 284 FEYVMLKGINDSPRDALNLIKILKGIPAKINL-IPFN 319 +++ NDS + + K + A IN IPF+ Sbjct: 213 ITTLLVSDENDSLEEVKEIAKFI----ASINPNIPFH 245 >gi|291280473|ref|YP_003497308.1| pyruvate formate-lyase activating enzyme [Deferribacter desulfuricans SSM1] gi|290755175|dbj|BAI81552.1| pyruvate formate-lyase activating enzyme [Deferribacter desulfuricans SSM1] Length = 298 Score = 44.5 bits (104), Expect = 0.030, Method: Composition-based stats. Identities = 40/240 (16%), Positives = 89/240 (37%), Gaps = 39/240 (16%) Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+ C T + + A EI+ + A ++ E + G Sbjct: 80 NCTLCGTCVDECPAD--ALEIIGYYIAAEEVIESVCKDELFFDSSKGG-------VTFSG 130 Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP--NIARVGEEIGVMLAISLH 244 GEP + +++ L S L+ S + TSG+ NI + I L + Sbjct: 131 -GEPFAQPEFLRELLK-LSKEKRLNTS-----VDTSGYTDFANIEACNQYIDTYL-YDIK 182 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304 + +D ++ + ++++ + ++ R+ ++ G+ND + + Sbjct: 183 MMDDDKHKKYTGVSNR----LILENLKKLDEIAADIRVRIP--LIPGVNDDVEEIDKIYD 236 Query: 305 ILKGIPAK--INLIPFNPWPGCEYLC------------SDQKDIVTFSECIKRSGYSSPI 350 +K + + ++L+P++ +YL D+ I F E +++G+S I Sbjct: 237 FIKDLKSVKGVDLLPYHNIMIDKYLRLGMDVLVGDIPEIDKNKINYFKEFFEKNGFSVLI 296 >gi|329121946|ref|ZP_08250559.1| radical SAM domain protein [Dialister micraerophilus DSM 19965] gi|327467392|gb|EGF12891.1| radical SAM domain protein [Dialister micraerophilus DSM 19965] Length = 477 Score = 44.5 bits (104), Expect = 0.030, Method: Composition-based stats. Identities = 39/248 (15%), Positives = 87/248 (35%), Gaps = 28/248 (11%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 +C++ C+L C +C+ G + R L+ I+ ++ S Sbjct: 98 AICLNIAHDCNLRCKYCFAGQGGYGK-------------WRMLMSFDVARRAIDFLIAHS 144 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234 RK + G GEPL N+ ++++++ R++L+++G + + +V Sbjct: 145 GPRKHCEVDFFG-GEPLMNWHVIQQTVTYIRQKERKHNKIVRLSLTSNGMLLDKEKVKYL 203 Query: 235 IGVMLAISLHAVSNDLR---NILVPINRKY-PLEMLIDACRHYPGLSNARRITFEYVMLK 290 +++ L + R + + P + ++ ++ N K Sbjct: 204 NDNHISLIL--SIDGRREMHDRMRPGVHGEGTYDQIVKNLKYCVEHRNGEEYYVRGTFTK 261 Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK--DIVTFSECIKRSGYSS 348 D D +++ G PA +++ P G +Y + + I E + Sbjct: 262 YNLDFTTDVKDMVD--TGFPA-LSMEPVIGEEGTDYSITKEDLPAIKKEYEKLADFFIK- 317 Query: 349 PIRTPRGL 356 R G Sbjct: 318 --REEEGR 323 >gi|315168988|gb|EFU13005.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecalis TX1341] Length = 254 Score = 44.5 bits (104), Expect = 0.030, Method: Composition-based stats. Identities = 40/247 (16%), Positives = 83/247 (33%), Gaps = 60/247 (24%) Query: 123 GCSLTCSFCYT------GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176 GC + C FC+ G+ V +T +E+L + L RS G+ G Sbjct: 31 GCRMRCQFCHNPDTWKIGSGGRV--VTTDEVLEEALRFRSYWGEKGG------------- 75 Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARV 231 I + G GEPL D + + + + TL T G P I++ Sbjct: 76 -----ITVSG-GEPLLQMDFL---IDLFKKAKAQGI---HTTLDTCGKPFTREEPFISQF 123 Query: 232 GEEIGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 E + L + + N+ +L + + +++ + + + +V++ Sbjct: 124 DELMKYTDLLLFDIKHIDNEQHKLLTTQSN----DNILEMATYLSEIDK--PVWIRHVLV 177 Query: 290 KGINDSPRDALNLIKILKGIPA--KINLIPFNPWP-------GCEY-----LCSDQKDIV 335 +D + L +K + K+ ++P++ G Y + Sbjct: 178 PQRSDYDEYLIRLDAFIKTLNNVDKVEVLPYHTMGKYKWEELGIPYPLEGIEPPKNDRVE 237 Query: 336 TFSECIK 342 + + Sbjct: 238 NAKKLLH 244 >gi|294793467|ref|ZP_06758604.1| radical SAM domain protein [Veillonella sp. 3_1_44] gi|294455037|gb|EFG23409.1| radical SAM domain protein [Veillonella sp. 3_1_44] Length = 463 Score = 44.5 bits (104), Expect = 0.030, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 19/114 (16%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQ---KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMV 171 LC++ C+L C +C+ + R L+ ++ ++ Sbjct: 92 ALCLNIAHDCNLACKYCFASQGDYGGVKR---------------ELMSFDVAKRAVDFLI 136 Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225 S R+ I G GEPL N+D VK+++ ++TL+T+G + Sbjct: 137 KMSGPRQHCEIDFFG-GEPLLNWDVVKQTVEYIESIQEKHNKIFKLTLTTNGML 189 >gi|269797703|ref|YP_003311603.1| radical SAM protein [Veillonella parvula DSM 2008] gi|282848976|ref|ZP_06258365.1| radical SAM domain protein [Veillonella parvula ATCC 17745] gi|269094332|gb|ACZ24323.1| Radical SAM domain protein [Veillonella parvula DSM 2008] gi|282581251|gb|EFB86645.1| radical SAM domain protein [Veillonella parvula ATCC 17745] Length = 469 Score = 44.5 bits (104), Expect = 0.030, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 19/114 (16%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQ---KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMV 171 LC++ C+L C +C+ + R L+ ++ ++ Sbjct: 98 ALCLNIAHDCNLACKYCFASQGDYGGVKR---------------ELMSFDVAKRAVDFLI 142 Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225 S R+ I G GEPL N+D VK+++ ++TL+T+G + Sbjct: 143 KMSGPRQHCEIDFFG-GEPLLNWDVVKQTVEYIESIQEKHNKIFKLTLTTNGML 195 >gi|160902149|ref|YP_001567730.1| radical SAM domain-containing protein [Petrotoga mobilis SJ95] gi|160359793|gb|ABX31407.1| Radical SAM domain protein [Petrotoga mobilis SJ95] Length = 464 Score = 44.5 bits (104), Expect = 0.030, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 82/227 (36%), Gaps = 23/227 (10%) Query: 124 CSLTCSFC-YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 C+L C +C Y+ + RN T + + + + I + I Sbjct: 78 CNLQCRYCIYSEVYPMYRNNTLRAMNEDI-----AIKAIDLYFSLLREGISYNPYREPTI 132 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMG-LSFSKRRITLSTSG--FVPNIARVGEEIGVML 239 G GEPL NF+ +KK + + T++T+G IA + L Sbjct: 133 GFYG-GEPLLNFELIKKCIKYVKIKYKEFN---PHFTITTNGTLLSSKIASFLVQNNCSL 188 Query: 240 AISLHAVSND-LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 +SL + RN + P N K ++++ + + F + D + Sbjct: 189 IVSLDGPKEEHDRNRIFP-NGKGSHDIIMKRLNNLKKFYPDLPV-FSIAVYDWKTDFDKV 246 Query: 299 ALNLIKILKGIPAKINLIPFNPWP--GCEYLCSDQKDIVTFSECIKR 343 + K +P+ LI N G Y +++D TF E IK+ Sbjct: 247 NEFFAR--KDVPS---LIKANLVDAKGTYYEQFNKEDFETFKEKIKK 288 >gi|228996442|ref|ZP_04156083.1| Radical SAM domain protein [Bacillus mycoides Rock3-17] gi|228763325|gb|EEM12231.1| Radical SAM domain protein [Bacillus mycoides Rock3-17] Length = 468 Score = 44.5 bits (104), Expect = 0.031, Method: Composition-based stats. Identities = 41/242 (16%), Positives = 86/242 (35%), Gaps = 27/242 (11%) Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168 + LC++ C+L+C +C+ K + R+++ G I+ Sbjct: 94 RQTYVKALCLNVAHTCNLSCEYCFASQGKYNGS-------------RAIMSYEVGKRAID 140 Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--P 226 ++ S + +I G GEPL + VK+ ++ A R T +T+G + Sbjct: 141 YLLENSGHHRNLDIDFFG-GEPLMAWKVVKQIVTYARSKEKEYKKTFRFTFTTNGMLLND 199 Query: 227 NIARVGEEIGVMLAISL---HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283 I + + +SL V + LR + K + ++ + + + Sbjct: 200 EITDFLNKEMYNVVLSLDGRKEVHDHLRK---TVTGKGSYDYIVPKFQEFVKSRGDKEYY 256 Query: 284 FEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK--DIVTFSECI 341 D D ++ + G K+++ P P Y +++ DI E + Sbjct: 257 VRGTYTHNNVDFTNDIFHIADL--GFD-KLSMEPVICNPREPYALTEKDLPDIYNQYEIL 313 Query: 342 KR 343 + Sbjct: 314 AK 315 >gi|300728461|ref|ZP_07061821.1| pyruvate formate-lyase 1-activating enzyme [Prevotella bryantii B14] gi|299774262|gb|EFI70894.1| pyruvate formate-lyase 1-activating enzyme [Prevotella bryantii B14] Length = 248 Score = 44.5 bits (104), Expect = 0.031, Method: Composition-based stats. Identities = 36/241 (14%), Positives = 82/241 (34%), Gaps = 47/241 (19%) Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC + C FC+ T TA+++L + R+ G+ G Sbjct: 28 GCPMRCQFCHNPDTWKLDKTNETTADDLLDKAERYRTYWGEKGG---------------- 71 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS--FSKRRITLSTSG-FVPNIARVGEEIG 236 I + G GE L D + + A G++ + G + ++ Sbjct: 72 --ITVSG-GEALMQIDFLLELFEKA-HQRGINTCLDTSAQPFTRHGAWFEKFEKLMAVTD 127 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 + + + ++++ L E ++D R+ ++ + +V++ I D+ Sbjct: 128 -TILLDIKHINSEEHKKLTRWGN----ENILDCARYLSDINK--PVWIRHVLIPSITDND 180 Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEYLC------------SDQKDIVTFSECIK 342 R L + LK + +I+++P++ +Y + I + Sbjct: 181 RYLQELAEFLKTLKNIERIDVLPYHTLGVFKYEKLGIDYPLEGIPTPTPERIENAKNILA 240 Query: 343 R 343 + Sbjct: 241 Q 241 >gi|266619565|ref|ZP_06112500.1| pyruvate formate-lyase 1-activating enzyme [Clostridium hathewayi DSM 13479] gi|288868850|gb|EFD01149.1| pyruvate formate-lyase 1-activating enzyme [Clostridium hathewayi DSM 13479] Length = 256 Score = 44.5 bits (104), Expect = 0.031, Method: Composition-based stats. Identities = 36/215 (16%), Positives = 76/215 (35%), Gaps = 39/215 (18%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C ++ +T EIL Q +R Sbjct: 28 GCPMRCQYCHNPDTWSLHGGTA--MTVSEILDQYEASRPFY------------------- 66 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSM---GLSFSKRRITLSTSGFVPNIARVGEE 234 + I + G GEPL + V + A L S S ++ + R+ Sbjct: 67 RGGGITVTG-GEPLLQMEFVTELFEEACRRDIHTCLDTSGVTFRASDQAYLEQLDRLLAS 125 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 ++ + L + ++ L + + L+ Y + +V++ G+ D Sbjct: 126 TR-LVMLDLKQIDDEKHRALTGHSNRNILQ-----FAEYLDQK-QVPMWIRHVVVPGLTD 178 Query: 295 SPRDALNLIKILKGIP-AK-INLIPFNPWPGCEYL 327 S +D +L + + + AK ++++P++ +Y Sbjct: 179 SEKDLYHLGRFIGTLKYAKALDVLPYHDMGKVKYK 213 >gi|315635902|ref|ZP_07891164.1| radical SAM domain protein [Arcobacter butzleri JV22] gi|315479881|gb|EFU70552.1| radical SAM domain protein [Arcobacter butzleri JV22] Length = 457 Score = 44.5 bits (104), Expect = 0.032, Method: Composition-based stats. Identities = 41/197 (20%), Positives = 75/197 (38%), Gaps = 18/197 (9%) Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160 V+ E I L ++ GC+L+C++CY ++N + ++ ++ Sbjct: 75 VKEEETKIEHFPAKALILNVTSGCNLSCTYCYKADLTSLKN--SGQMTFEI--------- 123 Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD---SMGLSFSKRRI 217 + I+ S K +I G GEPL N +K+ ++ A+D S GL + Sbjct: 124 --AKDAIDMFYKESPYLKEYSITFFG-GEPLSNLPLIKQIIAYANDFFESKGLKIG-YSM 179 Query: 218 TLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277 T + + + R E V L IS+ + V N K E + + Sbjct: 180 TSNATLLTDEVIRYLHESKVDLTISIDGPESLHNKTRVYENGKGSYEKVAKNVAKLLDIY 239 Query: 278 NARRITFEYVMLKGIND 294 R + + +G+ D Sbjct: 240 KNRTVGARVTLTRGVTD 256 >gi|256810318|ref|YP_003127687.1| Radical SAM domain protein [Methanocaldococcus fervens AG86] gi|256793518|gb|ACV24187.1| Radical SAM domain protein [Methanocaldococcus fervens AG86] Length = 433 Score = 44.5 bits (104), Expect = 0.032, Method: Composition-based stats. Identities = 38/217 (17%), Positives = 80/217 (36%), Gaps = 30/217 (13%) Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167 + E+ R + V GC+L C FC + + D + Sbjct: 102 LIERGRNIIQVRGHCGCNLNCIFCSVDEGEYSK-----------TRKNDYYVDLEYLVEN 150 Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNF---DNVKKSLSIASDSMGLSFSKRRITLSTSGF 224 + G K + G GEP + D V++ + I G+ +++ T+G Sbjct: 151 YKKMADFKGNKFIEAHLDGQGEPALYYPLVDLVQELVEINKKGNGI------VSMQTNGT 204 Query: 225 V---PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281 V I + E + +S++A ++ ++ R Y +E ++D + ++ Sbjct: 205 VLDYKLIDELEEAGLHRINLSINA-LDEKVAKMLSGRRDYNIEKILDIAEYI--KNSKIH 261 Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKI--NLI 316 + ++L IND + +I + ++ N+I Sbjct: 262 LLIAPLLLPNIND--EEFKKVIDYAVDLDLRVKQNII 296 >gi|120586952|ref|YP_961297.1| radical SAM domain-containing protein [Desulfovibrio vulgaris subsp. vulgaris DP4] gi|120564366|gb|ABM30109.1| Radical SAM domain protein [Desulfovibrio vulgaris DP4] Length = 473 Score = 44.1 bits (103), Expect = 0.032, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 57/182 (31%), Gaps = 29/182 (15%) Query: 184 MMGMGEPLCNFDNVKKSLSIA---SDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 + G G+P+ N ++L + M S + G P++ + Sbjct: 82 IAGPGDPMANAAATLETLRLIRQRHPDMLFCLSSNGL-----GMPPHLDALAANGVTHAT 136 Query: 241 ISLHAVSNDLRNILVPI------------NRKYPLEMLIDACRHYPGLSNARRITFEYVM 288 ++++AV D+ L + LE + A + ++ Sbjct: 137 LTINAVDPDISARLYTWVRDGKVVWRGRPAAELMLERQLTALTGLVQR--GIVVKVNTIL 194 Query: 289 LKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEYLC---SDQKDIVTFSECIKRS 344 + GIND + + + + A +N+IP P + + + + + Sbjct: 195 VPGINDG--HVEQVAEKVAALGATLMNIIPLRPTHDTPLAQVAEPSPEAVGE-ARRLAGA 251 Query: 345 GY 346 Sbjct: 252 HI 253 >gi|227503993|ref|ZP_03934042.1| [formate-C-acetyltransferase]-activating enzyme [Corynebacterium striatum ATCC 6940] gi|227199387|gb|EEI79435.1| [formate-C-acetyltransferase]-activating enzyme [Corynebacterium striatum ATCC 6940] Length = 289 Score = 44.1 bits (103), Expect = 0.032, Method: Composition-based stats. Identities = 52/306 (16%), Positives = 102/306 (33%), Gaps = 77/306 (25%) Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 I PE+++ + + D + + +V P +R T+ +S GC L C Sbjct: 34 EIKRPELMEARRTGD----------IALVHSWELVTSVDGP-GTRMTMFMS---GCPLRC 79 Query: 129 SFCYTGTQKLVRNLTAEEI----LLQVL-LARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 +C+ N E+ L ++ + + + P + G + S G + I Sbjct: 80 QYCH--------NPDTMEMKVGTLERIEDVVKRIKRYKPIFKASGGGLTISGGEPLFQIA 131 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 V K + G+ T+ TSGF+ + R + + L + Sbjct: 132 FTR---------RVLKEV----HDAGI-----HTTIDTSGFLGSRLRDEDLENIDLVLLD 173 Query: 244 HAVSND------LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 ++ R L P ID + + + +V++ G+ DSP Sbjct: 174 VKSGDEETYKLVTRRELQP---------TIDFGDRLSAM--GKPVWIRFVVVPGLTDSPE 222 Query: 298 DALNLIKILKGIPAKINLI---PFNP-----WPGCEY-------LCSDQKDIVTFSECIK 342 + N+ +I+ + I PF+ W Y +DI + + Sbjct: 223 NVRNVAEIVGRWSNNVERIEVLPFHNMGADKWHELGYPYTLEDTKPPKPEDIEAIRDVFR 282 Query: 343 RSGYSS 348 G++ Sbjct: 283 AKGFTV 288 >gi|284799798|ref|ZP_06390346.1| pyruvate formate-lyase 1-activating enzyme [Neisseria subflava NJ9703] gi|284796831|gb|EFC52178.1| pyruvate formate-lyase 1-activating enzyme [Neisseria subflava NJ9703] Length = 204 Score = 44.1 bits (103), Expect = 0.033, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 62/179 (34%), Gaps = 39/179 (21%) Query: 189 EPLCNFDNVKK--------SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 EPL ++ V+ + DS G + + + + + ++ Sbjct: 38 EPLLQYEFVRDWFTACREHDIHTCLDSNGYAL----------HYDSILDDLLDHTN-LVM 86 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 + L + ++ +LV P + R+ + R+ YV++ G D R A Sbjct: 87 LDLKQIDPEIHKVLV----GIPNTKTLKFARYLAERNQPTRV--RYVVVPGYTDDERSAH 140 Query: 301 NLIKILKGIPAK--INLIPFNP-------WPGCEYL-----CSDQKDIVTFSECIKRSG 345 L + + + + L+P++ G EY ++ I+ E ++ G Sbjct: 141 LLGEFIGDMDNVEMVELLPYHELGAHKWALCGDEYKLKGVHPPPKETILKIKEILESYG 199 >gi|193213269|ref|YP_001999222.1| nitrogenase cofactor biosynthesis protein NifB [Chlorobaculum parvum NCIB 8327] gi|193086746|gb|ACF12022.1| nitrogenase cofactor biosynthesis protein NifB [Chlorobaculum parvum NCIB 8327] Length = 424 Score = 44.1 bits (103), Expect = 0.033, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 65/162 (40%), Gaps = 19/162 (11%) Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIG 236 IS + + G G+P N + ++L + + + ++T+G +P I + E Sbjct: 75 ISVVGIAGPGDPFANPEETMETLRLVREKY----PDMLLCVATNGLDVLPYIEELAELKV 130 Query: 237 VMLAISLHAVSNDLRNILVPINR--------KYPLEMLIDACRHYPGLSNARRIT--FEY 286 + ++++A+ ++ + R + E+L++ +T Sbjct: 131 SHVTLTINAIDPEIGQEIYAWVRYQKRMYRDRQAAELLLENQLAALQKLKRFGVTAKVNS 190 Query: 287 VMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEYL 327 +++ GIND + + + + + + A I N +P+ + Sbjct: 191 IIIPGIND--KHVVEVARQVASMGADILNALPYYNTTETVFE 230 >gi|128228|sp|P11067|NIFB_AZOVI RecName: Full=FeMo cofactor biosynthesis protein nifB gi|142338|gb|AAA22148.1| nifB [Azotobacter vinelandii] Length = 502 Score = 44.1 bits (103), Expect = 0.033, Method: Composition-based stats. Identities = 35/216 (16%), Positives = 76/216 (35%), Gaps = 32/216 (14%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C +C N + ++ +VL P + + + ++S + Sbjct: 67 CNIQCHYCNRKYD--CANESRPGVVSEVLT--------PEQAVKKVKAVAAAIPQMSVLG 116 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVMLAI 241 + G G+PL N + + S+ ++ +ST+G + + + + I Sbjct: 117 IAGPGDPLANPKRTLDTFRMLSEQA----PDMKLCVSTNGLALPECVEELAKHNIDHVTI 172 Query: 242 SLHAVSNDLRNILVP-----------INRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 +++ V ++ + P RK +E + VM+ Sbjct: 173 TINCVDPEIGAKIYPDLLEQQAHPRRQGRKILIEQQQKGLEMLVAR--GILVKVNSVMIP 230 Query: 291 GINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCE 325 G+ND + KI+K A + N++P P Sbjct: 231 GVND--EHLKEVSKIVKAKGAFLHNVMPLIAEPEHG 264 >gi|157369944|ref|YP_001477933.1| pyruvate formate lyase-activating enzyme 1 [Serratia proteamaculans 568] gi|157321708|gb|ABV40805.1| pyruvate formate-lyase activating enzyme [Serratia proteamaculans 568] Length = 246 Score = 44.1 bits (103), Expect = 0.034, Method: Composition-based stats. Identities = 45/249 (18%), Positives = 83/249 (33%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T EE++ + R + G Sbjct: 29 GCLMRCLYCHNRDTWDTHGGKE--VTVEELMKDAVSYRHFMNASGGG------------- 73 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 V GE + + V+ A G++ L T+GFV P I + + Sbjct: 74 -----VTASGGEAILQAEFVRDWFR-ACHEEGIN-----TCLDTNGFVRRYDPVIDELLD 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L +++D+ LV ++ LE Y N R YV++ G + Sbjct: 123 ATD-LVMLDLKQMNDDIHQNLVGVSNHRTLE-----FARYLAKRNQ-RTWIRYVVVPGWS 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNP-------WPGCEYL-----CSDQKDIVTFSE 339 D + L + K + KI L+P++ G EY + Sbjct: 176 DDDKSTHLLGEFTKDMTNIEKIELLPYHELGKHKWVAMGEEYKLDGVHPPKADTMERVKG 235 Query: 340 CIKRSGYSS 348 ++ G+ Sbjct: 236 ILESYGHKV 244 >gi|308067130|ref|YP_003868735.1| arylsulfatase regulator (Fe-S oxidoreductase) [Paenibacillus polymyxa E681] gi|305856409|gb|ADM68197.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Paenibacillus polymyxa E681] Length = 484 Score = 44.1 bits (103), Expect = 0.034, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 70/193 (36%), Gaps = 16/193 (8%) Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166 ++ + TL + C+L CS+C R T+ ++ + Sbjct: 86 HMLQHQLKTLTLQVTQNCNLRCSYCVYSGGYDNRGHTS-----------LMMDFETARKC 134 Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226 I+ ++ SV + G GEPL NF VKK + + + +T + + Sbjct: 135 IDFVIDRSVDSDRLDFGFYG-GEPLINFPLVKKCVEYIKEQVAYRDVGFHLTTNGTLLND 193 Query: 227 NIARVGEEIGVMLAISL-HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFE 285 +I +E +L ISL N RN +N + + +I + FE Sbjct: 194 DILDFLDEHHFVLTISLDGDQENHDRNRRFAVNGRGSFDTIIANVD---KIKRNYPDLFE 250 Query: 286 YVMLKGINDSPRD 298 ++ + D+ D Sbjct: 251 WINFNVVLDTRND 263 >gi|225076522|ref|ZP_03719721.1| hypothetical protein NEIFLAOT_01570 [Neisseria flavescens NRL30031/H210] gi|224952201|gb|EEG33410.1| hypothetical protein NEIFLAOT_01570 [Neisseria flavescens NRL30031/H210] Length = 190 Score = 44.1 bits (103), Expect = 0.034, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 62/179 (34%), Gaps = 39/179 (21%) Query: 189 EPLCNFDNVKK--------SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 EPL ++ V+ + DS G + + + + + ++ Sbjct: 24 EPLLQYEFVRDWFTACREHDIHTCLDSNGYAL----------HYDSILDDLLDHTN-LVM 72 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 + L + ++ +LV P + R+ + R+ YV++ G D R A Sbjct: 73 LDLKQIDPEIHKVLV----GIPNTKTLKFARYLAERNQPTRV--RYVVVPGYTDDERSAH 126 Query: 301 NLIKILKGIPAK--INLIPFNP-------WPGCEYL-----CSDQKDIVTFSECIKRSG 345 L + + + + L+P++ G EY ++ I+ E ++ G Sbjct: 127 LLGEFIGDMDNVEMVELLPYHELGAHKWALCGDEYKLKGVHPPPKETILKIKEILESYG 185 >gi|294791611|ref|ZP_06756759.1| radical SAM domain protein [Veillonella sp. 6_1_27] gi|294456841|gb|EFG25203.1| radical SAM domain protein [Veillonella sp. 6_1_27] Length = 463 Score = 44.1 bits (103), Expect = 0.034, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 19/114 (16%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQ---KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMV 171 LC++ C+L C +C+ + R L+ ++ ++ Sbjct: 92 ALCLNIAHDCNLACKYCFASQGDYGGVKR---------------ELMSFDVAKRAVDFLI 136 Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225 S R+ I G GEPL N+D VK+++ ++TL+T+G + Sbjct: 137 KMSGSRQHCEIDFFG-GEPLLNWDVVKQTVEYIESIQEKHNKIFKLTLTTNGML 189 >gi|34556807|ref|NP_906622.1| hypothetical protein WS0374 [Wolinella succinogenes DSM 1740] gi|34482522|emb|CAE09522.1| conserved hypothetical protein [Wolinella succinogenes] Length = 303 Score = 44.1 bits (103), Expect = 0.035, Method: Composition-based stats. Identities = 37/202 (18%), Positives = 70/202 (34%), Gaps = 38/202 (18%) Query: 124 CSLTCSFC------YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 C+ C +C T + V EEIL ++ A Sbjct: 29 CNFDCLYCELEGKKATDSMGEV--AKVEEILEELREALPRYKPDV--------------- 71 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS---GFVPNIARVGEE 234 I + GEP + + + + L S + + LS G + E Sbjct: 72 ----ITVTANGEPTL-YPALLPLIRGINA---LPHSAKTLILSNGSRFGEPEVQEALLEF 123 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 V ++ + R + + + +I + + I E + +KG+ND Sbjct: 124 DMVKFSLDAVSARAFKR--VDRAHDSLSISQIIQGIKGFRSRYRGDLIA-EVLFVKGVND 180 Query: 295 SPRDALNLIKILKGI-PAKINL 315 SP +A + ++LK I P++++L Sbjct: 181 SPEEARAIARVLKEIAPSRVDL 202 >gi|168207460|ref|ZP_02633465.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens E str. JGS1987] gi|170661174|gb|EDT13857.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens E str. JGS1987] Length = 235 Score = 44.1 bits (103), Expect = 0.035, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 88/235 (37%), Gaps = 36/235 (15%) Query: 98 GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLA 154 G +ET+ + + V Q GC + C+FC+ T + T EE++ ++ Sbjct: 4 GRIHSLETMGLVDGPGIRFVVFMQ-GCGIRCAFCHNPDTWCKDKGTEYTPEELVNKIKRF 62 Query: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSK 214 ++ G + G GEPL + + + L G+ Sbjct: 63 KTYFNASGGG-----------------VTFSG-GEPLLQPEFLLECLK-LCKKEGI---- 99 Query: 215 RRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274 TL T+G E ++ + + LV + P++ ++ + Sbjct: 100 -HTTLDTAGVGLGNYEEILEYVDLILFDVKETDPEKYKNLVKV----PIDKSLEFLK--V 152 Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327 S +++ +V++ G D+ D + + KI+ G+ K+ L+P++ +Y Sbjct: 153 AQSMNKKMWIRHVVVPGYTDNKEDLMRIKKIVDGLNNIEKVELLPYHVLGVNKYE 207 >gi|289450580|ref|YP_003475181.1| six-Cys-in-45 modification radical SAM protein [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185127|gb|ADC91552.1| six-Cys-in-45 modification radical SAM protein [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 469 Score = 44.1 bits (103), Expect = 0.038, Method: Composition-based stats. Identities = 51/318 (16%), Positives = 107/318 (33%), Gaps = 33/318 (10%) Query: 27 PQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTR 86 + ++ + ++ I + ++ L++ EI D D Sbjct: 16 SESQALFFVDELAEAVFSAYIENSAKRPTKAKLT--ELSERSGFDIHEIEDCCDEVDALI 73 Query: 87 --KWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTA 144 K + + P + + +E +Y + ++C+ C+L C +C+ G + Sbjct: 74 EQKAIFQPPVK-----ISVEQLYPEKPMIKSMCLHLSHDCNLRCKYCFAGQG----DYGT 124 Query: 145 EEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIA 204 RS+L G I+ ++ S R +I G GEPL N+ V + A Sbjct: 125 GH--------RSMLALATGKRAIDFLIEASRSRHNLDIDFFG-GEPLLNWPVVVELTKYA 175 Query: 205 SDS---MGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRK 260 + T +T I + E + V+L+I +ND + + Sbjct: 176 ETEGPKHNKNIRLTLTTNATLLNQEKIDFLNEHMKNVVLSIDGRPETND--RMRPATGGR 233 Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320 +++ + + + D +D L+ +G+ ++++ P Sbjct: 234 SSYALVMRNIKKFVAQRGKKEYYVRGTYTHFNTDFSKDVLHFAD--EGLE-QLSMEPVVA 290 Query: 321 WPGCEY--LCSDQKDIVT 336 P +Y SD I Sbjct: 291 PPEVDYSLKLSDLPQIEA 308 >gi|301058093|ref|ZP_07199145.1| radical SAM domain protein [delta proteobacterium NaphS2] gi|300447725|gb|EFK11438.1| radical SAM domain protein [delta proteobacterium NaphS2] Length = 429 Score = 44.1 bits (103), Expect = 0.039, Method: Composition-based stats. Identities = 37/219 (16%), Positives = 71/219 (32%), Gaps = 27/219 (12%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+ C C + + + P +I + + + IV Sbjct: 203 CNAACLGCLSLQPG-----------ATFEASHERICFTPSMGEIVDLAVAHLTCAPKAIV 251 Query: 184 MMGMG---EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG-FVPNIARVGEEIGVML 239 G G EPL +D + +S+ K I L+T+G F I ++ E + Sbjct: 252 SFGQGCEGEPLTEYDLIAESIREIRRQTL----KGTINLNTNGSFPDRIEKIAESGLDSI 307 Query: 240 AISLHAVSNDL-RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 ISL++ + R P + Y ++ A Y++ G++D + Sbjct: 308 RISLNSARREFYRAYYRP--KGYGFNDVVKAIG--LSRQLGLYTMLNYLVFPGVSDQQEE 363 Query: 299 ALNLIKILKGIPAKINLIPF-NPWPGCEYLCSDQKDIVT 336 L ++ +N + N E+ + I Sbjct: 364 LDALKALISKTG--VNFLHLKNLCIDPEFYTAKMPAIHA 400 >gi|118581863|ref|YP_903113.1| radical SAM domain-containing protein [Pelobacter propionicus DSM 2379] gi|118504573|gb|ABL01056.1| Radical SAM domain protein [Pelobacter propionicus DSM 2379] Length = 289 Score = 44.1 bits (103), Expect = 0.041, Method: Composition-based stats. Identities = 44/240 (18%), Positives = 86/240 (35%), Gaps = 32/240 (13%) Query: 110 EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169 G + ++ GC++ C +C R+ A E + +R L + E Sbjct: 21 HHKNGRMHLAVAPGCNIKCGYCT------RRHDCANE-SRPGVTSRLLTPSEALVKVREV 73 Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPN 227 M P VG I I + G G+PL N + ++ + F + +ST+G + Sbjct: 74 MASPVVGPIIKVIGIAGPGDPLAN-EETFETFELVKRE----FPHLMLCMSTNGLLLPES 128 Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILV----PINRKYP--------LEMLIDACRHYPG 275 I R+ E L ++++A+ + + R Y + + + Sbjct: 129 IDRLHELGLHSLTVTINAIDAGVGAWIYRHVIYHGRSYSGVEGAAILIANQFEGLKRAAR 188 Query: 276 LSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEY-LCSDQKD 333 L I V++ GIN + +K + A + N++P P + ++ Sbjct: 189 L--GMTIKVNTVLIPGIN--EDQIPLIAARVKELGAFVMNIMPLIPQADLAHIQRPSEEH 244 >gi|158421695|ref|YP_001522987.1| biotin synthase-related enzyme [Azorhizobium caulinodans ORS 571] gi|158328584|dbj|BAF86069.1| biotin synthase-related enzyme [Azorhizobium caulinodans ORS 571] Length = 326 Score = 44.1 bits (103), Expect = 0.041, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 55/138 (39%), Gaps = 6/138 (4%) Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 R+ E L + L AV+ ++R ++P + P+ + A + +++ Y+ Sbjct: 177 FKRMHEAGADSLGMHLEAVTPEVRARIMPGKAQVPIARYLSAFEAAVPVFGKGQVS-TYI 235 Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYS 347 + G+ D+ L + + L ++PF P G F + + + + Sbjct: 236 L-AGLGDTREAILAMCEELLKRGVYPFVVPFVPISGTPLEGHPGPQ-PAFMKSVLQP-LA 292 Query: 348 SPIRTP--RGLDILAACG 363 + +R R DI A CG Sbjct: 293 AMVRAAGLRATDIKAGCG 310 >gi|126458652|ref|YP_001054930.1| GTP cyclohydrolase subunit MoaA [Pyrobaculum calidifontis JCM 11548] gi|126248373|gb|ABO07464.1| GTP cyclohydrolase subunit MoaA [Pyrobaculum calidifontis JCM 11548] Length = 309 Score = 44.1 bits (103), Expect = 0.042, Method: Composition-based stats. Identities = 30/192 (15%), Positives = 69/192 (35%), Gaps = 36/192 (18%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+ C FC+ Q + G ED E + + Sbjct: 21 CNYNCLFCHFEGQ------------------QRRQGSTLTAEDYEFASYVFSKLGVYDFK 62 Query: 184 MMGMGEPLC--NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVML 239 + G GEPL + D + ++++ ++++T+G + + R+ + + Sbjct: 63 LTG-GEPLLRRDIDKIVEAIARV----------AAVSITTNGLLLRRWVDRLYKAGLRKI 111 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 +S+H + + +V + + ++ + + I V+L+GIN + Sbjct: 112 NVSIHTADPEKYSKVV-GAPTWAFKEVLRGLQE--SRNRGLAIKLNAVVLRGINTDDKSV 168 Query: 300 LNLIKILKGIPA 311 L+K+ + A Sbjct: 169 KELVKLAASLDA 180 >gi|188590775|ref|YP_001921048.1| glycyl-radical enzyme activating family protein [Clostridium botulinum E3 str. Alaska E43] gi|188501056|gb|ACD54192.1| glycyl-radical enzyme activating family protein [Clostridium botulinum E3 str. Alaska E43] Length = 310 Score = 43.7 bits (102), Expect = 0.042, Method: Composition-based stats. Identities = 35/258 (13%), Positives = 81/258 (31%), Gaps = 50/258 (19%) Query: 124 CSLTCSFCYTGTQKLVR--------------NLTAEEILLQVLLARSLLGDFPGCEDIEG 169 C C + R N L+ D Sbjct: 69 CKTICEYDAIDLNNFNRIDRDKCISCGKCAENCYPG-----ALVVSGKEMSVKEVLDELN 123 Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN-- 227 R + + G GEPL + +L I + T+ T+G+V Sbjct: 124 KDSSQFRRSNGGVTLSG-GEPLLQHEF---ALEILKGCKSIGI---HTTIETTGYVDKEI 176 Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 + ++ + ++L + + ++ D V + K +++ + L + I Sbjct: 177 LRKIAPWVDLVL-LDIKTLNEDKHIKYVGASNKI----ILENAKSISELVTSTIIRVP-- 229 Query: 288 MLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEYLC-------------SDQK 332 ++ N + ++ K K + +I+L+P++ +Y C ++ Sbjct: 230 VIPQFNCDEKSIQDIAKFTKSLNNITEIHLLPYHKLGLNKYDCLGKEYLMKNDINTPSEE 289 Query: 333 DIVTFSECIKRSGYSSPI 350 ++ F + ++ G + I Sbjct: 290 VMLNFKKIVEDIGLTCNI 307 >gi|257470822|ref|ZP_05634912.1| Fe-S oxidoreductase [Fusobacterium ulcerans ATCC 49185] gi|317065026|ref|ZP_07929511.1| Fe-S oxidoreductase [Fusobacterium ulcerans ATCC 49185] gi|313690702|gb|EFS27537.1| Fe-S oxidoreductase [Fusobacterium ulcerans ATCC 49185] Length = 282 Score = 43.7 bits (102), Expect = 0.043, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 69/189 (36%), Gaps = 23/189 (12%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C FC G LA E + K I Sbjct: 28 CNMNCVFCECGATPK--------------LAEKRESFKDIREVENEIRSVLKDVKPDYIT 73 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM--LAI 241 G GEP + D + K ++ D+ ++ L T+ + N V +E+ + Sbjct: 74 FSGNGEPTLSKD-LGKIINWIKDNT-----DVKVCLITNSLLLNDDEVIKEVQRADLIIP 127 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 +L++V +++ + + + + ML+ + + N ++ E +++G+ND Sbjct: 128 TLNSVDDEIFHKINRPSNNIHISMLMSGLKKLSAVYNG-KVYLETFIIEGLNDGEDHIKR 186 Query: 302 LIKILKGIP 310 + LK I Sbjct: 187 MAAFLKTIK 195 >gi|289828913|ref|ZP_06546639.1| pyruvate formate lyase-activating enzyme 1 [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 251 Score = 43.7 bits (102), Expect = 0.045, Method: Composition-based stats. Identities = 35/217 (16%), Positives = 77/217 (35%), Gaps = 44/217 (20%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T E+++ +V+ R + G G Sbjct: 48 GCLMRCLYCHNRDTWDTHGGKE--ITVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAE 105 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 + + ++ G+ L T+GFV P I + + Sbjct: 106 FVRD---------------WFRACK----KEGI-----HTCLDTNGFVRRYDPVIDELLD 141 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + L +++++ LV ++ LE Y N ++ YV++ G + Sbjct: 142 VTD-LVMLDLKQMNDEIHQNLVGVSNHRTLE-----FAQYLSKKN-VKVWIRYVVVPGWS 194 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYLC 328 D A L + + + KI L+P++ +++ Sbjct: 195 DDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVA 231 >gi|116754318|ref|YP_843436.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Methanosaeta thermophila PT] gi|116665769|gb|ABK14796.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Methanosaeta thermophila PT] Length = 247 Score = 43.7 bits (102), Expect = 0.045, Method: Composition-based stats. Identities = 42/242 (17%), Positives = 85/242 (35%), Gaps = 32/242 (13%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC C FC L T EI + + FP + ++ G + Sbjct: 28 GCPFRCPFCQNAE--LQSGWTPVEI------SELINHLFPRRGAGQSILHEFSGSVCIDS 79 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVMLA 240 V++ GEPL D V +++ D GL + T+G+ P + EE M+ Sbjct: 80 VVLSGGEPLAQSDAVV-AIAREVDVRGLDLG-----IETNGYYPESLEVLISEEYLDMVF 133 Query: 241 ISLHAVSNDLRNILVPINR--KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 + + A R + + L ++ + + + G+ S + Sbjct: 134 LDIKAAP---REDMYQRATGIRDALPRVLRSLDVIVE--HGIPFEIRITVFPGM-PSEDE 187 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCE----YLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 + +L + + +L G + ++D++ ++ +K ++ IR+ R Sbjct: 188 LKEVSDLLWRLQPR-SLESVVLQQGHPPRGEFEPVSEEDLIRLAQLLK---FNIRIRSVR 243 Query: 355 GL 356 G Sbjct: 244 GS 245 >gi|328883089|emb|CCA56328.1| Pyruvate formate-lyase activating enzyme [Streptomyces venezuelae ATCC 10712] Length = 270 Score = 43.7 bits (102), Expect = 0.045, Method: Composition-based stats. Identities = 43/250 (17%), Positives = 82/250 (32%), Gaps = 59/250 (23%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC LTC +C+ +RN G VI G+ + I Sbjct: 55 GCPLTCLYCHNPDTWKMRN---------------------GKRTSADAVIAEAGKYVRFI 93 Query: 183 VMMG------MGEPLCNFDNVK--KSLSIASDSMGLSFSKRRITLSTSGF--VPNIARVG 232 + G GEPL V + L +GL L TSGF V + Sbjct: 94 SVSGGGATVSGGEPLL--QPVFTGELLHRMKHELGL-----HTALDTSGFLGVRATDALL 146 Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 + ++L + + + PL +D R L + + +V++ G+ Sbjct: 147 RDADLVL-LDIKSWDPAT----YTKVTGRPLAPTLDFARRLADL--GQEVHVRFVLVPGL 199 Query: 293 NDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEYLC------------SDQKDIVTFS 338 D P + + G+ ++++++PF+ ++ + + Sbjct: 200 TDDPANVEGVAAFAGGLGNVSRVDILPFHTLGEAKWQALAMPFTLHGTPSPTPEQVAAAR 259 Query: 339 ECIKRSGYSS 348 E + G ++ Sbjct: 260 EVFRAHGLNA 269 >gi|302851670|ref|XP_002957358.1| hypothetical protein VOLCADRAFT_119662 [Volvox carteri f. nagariensis] gi|300257317|gb|EFJ41567.1| hypothetical protein VOLCADRAFT_119662 [Volvox carteri f. nagariensis] Length = 79 Score = 43.7 bits (102), Expect = 0.047, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 2/36 (5%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYV 44 L + ELE G R Q+W+W+Y Sbjct: 16 LKSLTLPELEAWCASEGEEAPAN--RALQLWRWMYA 49 >gi|319791288|ref|YP_004152928.1| radical SAM protein [Variovorax paradoxus EPS] gi|315593751|gb|ADU34817.1| Radical SAM domain protein [Variovorax paradoxus EPS] Length = 356 Score = 43.7 bits (102), Expect = 0.048, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 53/133 (39%), Gaps = 16/133 (12%) Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 L + L V+ ++R+ ++P P+ + A G+ +++ Y++ G+ D+ Sbjct: 220 TLGMHLEVVTPEVRDRIMPGKASVPVSRYMSAFEAAVGVFGRGQVS-TYIL-AGLGDTRE 277 Query: 298 DA----LNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFSECIKRSGYSSPI 350 L + +G+ + +PF P G + + + + ++ + Sbjct: 278 AILDTCDQL--LARGVYPFV--VPFVPISGTPLEDHPAPSPEFMKSLLAPLGERVVAAGL 333 Query: 351 RTPRGLDILAACG 363 R+ DI A CG Sbjct: 334 RS---ADIKAGCG 343 >gi|169342629|ref|ZP_02863673.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens C str. JGS1495] gi|169299271|gb|EDS81340.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens C str. JGS1495] Length = 235 Score = 43.7 bits (102), Expect = 0.048, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 88/235 (37%), Gaps = 36/235 (15%) Query: 98 GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLA 154 G +ET+ + + V Q GC + C+FC+ T + T EE++ ++ Sbjct: 4 GRIHSLETMGLVDGPGIRFVVFMQ-GCGIRCAFCHNPDTWCKDKGTEYTPEELVNKITRF 62 Query: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSK 214 ++ G + G GEPL + + + L G+ Sbjct: 63 KTYFNASGGG-----------------VTFSG-GEPLLQPEFLLECLK-LCKKEGI---- 99 Query: 215 RRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274 TL T+G E ++ + + + LV + P++ ++ + Sbjct: 100 -HTTLDTAGVGLGNYEEILEYVDLILFDVKEIDPEKYKNLV----RVPIDKSLEFLK--V 152 Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327 S +++ +V++ G D+ D + + K + G+ K+ L+P++ +Y Sbjct: 153 AQSMNKKMWIRHVVVPGYTDNKEDLMRIKKFVDGLNNIEKVELLPYHVLGVNKYE 207 >gi|283856503|ref|YP_163304.2| pyruvate formate-lyase activating enzyme [Zymomonas mobilis subsp. mobilis ZM4] gi|283775507|gb|AAV90193.2| pyruvate formate-lyase activating enzyme [Zymomonas mobilis subsp. mobilis ZM4] Length = 263 Score = 43.7 bits (102), Expect = 0.050, Method: Composition-based stats. Identities = 37/216 (17%), Positives = 71/216 (32%), Gaps = 40/216 (18%) Query: 122 VGCSLTCSFCYTGTQKLVRN---LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 GC+L C +C+ ++N +T E++ +V L G I G Sbjct: 48 AGCALRCQYCHNPDSWFLKNGRAVTLAEMMEEVASYADFLKRAGGGITISG--------- 98 Query: 179 ISNIVMMGMGEPLCNFD---NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI 235 GEPL + + K+ + T+GF+ A Sbjct: 99 ---------GEPLVQPEFTGALLKAAKYL---------GLHTAIDTAGFLGAQADDALLS 140 Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 L + ND R L+ + + L + YV++ G+ D+ Sbjct: 141 NTDLVLLDIKAFNDKR---YKALTGVELQPTLAFAKRLAALKK--PVWLRYVLVPGLTDN 195 Query: 296 PRDALNLIKILKGIPA--KINLIPFNPWPGCEYLCS 329 + NL + +++++PF+ ++ S Sbjct: 196 FNEIANLADFAATLGNIERVDVLPFHKMGEYKWKAS 231 >gi|241762442|ref|ZP_04760520.1| pyruvate formate-lyase activating enzyme [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373036|gb|EER62694.1| pyruvate formate-lyase activating enzyme [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 270 Score = 43.7 bits (102), Expect = 0.050, Method: Composition-based stats. Identities = 37/216 (17%), Positives = 71/216 (32%), Gaps = 40/216 (18%) Query: 122 VGCSLTCSFCYTGTQKLVRN---LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 GC+L C +C+ ++N +T E++ +V L G I G Sbjct: 55 AGCALRCQYCHNPDSWFLKNGRAVTLAEMMEEVASYADFLKRAGGGITISG--------- 105 Query: 179 ISNIVMMGMGEPLCNFD---NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI 235 GEPL + + K+ + T+GF+ A Sbjct: 106 ---------GEPLVQPEFTGALLKAAKYL---------GLHTAIDTAGFLGAQADDALLS 147 Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 L + ND R L+ + + L + YV++ G+ D+ Sbjct: 148 NTDLVLLDIKAFNDKR---YKALTGVELQPTLAFAKRLAALKK--PVWLRYVLVPGLTDN 202 Query: 296 PRDALNLIKILKGIPA--KINLIPFNPWPGCEYLCS 329 + NL + +++++PF+ ++ S Sbjct: 203 FNEIANLADFAATLGNIERVDVLPFHKMGEYKWKAS 238 >gi|325847797|ref|ZP_08170019.1| six-Cys-in-45 modification radical SAM protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480815|gb|EGC83868.1| six-Cys-in-45 modification radical SAM protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 461 Score = 43.7 bits (102), Expect = 0.050, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 77/224 (34%), Gaps = 27/224 (12%) Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168 + +C++ C+L+C +C+ R E I + D + I+ Sbjct: 91 RKTYLKAMCLNVSHTCNLSCEYCFAKEG---RYHGPEAI----------MTDEVAKKSID 137 Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD-SMGLSFSKRRITLSTSGFV-- 225 ++ S +I G GEPL N+D VK ++ A + TL+T+G + Sbjct: 138 FLLENSGSHYNLDIDFFG-GEPLLNWDLVKNTVDYARSKEEEFN-KHFNFTLTTNGMLLD 195 Query: 226 -PNIARVGEEIG-VMLAISLHAV-SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI 282 I + + + V+L++ ++ R + + + ++ + + Sbjct: 196 DEKIEYLNKNMKNVVLSLDGRKEKHDEFRK---THDGRGSFDKIVPKFQKLVKARGDKEY 252 Query: 283 TFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 D D + + G + +L P +Y Sbjct: 253 YMRGTFTANNLDFTEDIKTYLDL--GFK-RTSLEPVVGNNEEDY 293 >gi|182626346|ref|ZP_02954101.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens D str. JGS1721] gi|177908365|gb|EDT70910.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens D str. JGS1721] Length = 235 Score = 43.7 bits (102), Expect = 0.051, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 86/235 (36%), Gaps = 36/235 (15%) Query: 98 GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLA 154 G +ET+ + + V Q GC + C+FC+ T + T EE++ ++ Sbjct: 4 GRIHSLETMGLVDGPGIRFVVFMQ-GCGIRCAFCHNPDTWCKDKGTEYTPEELVNKIKRF 62 Query: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSK 214 ++ G + G GEPL + + + L G+ Sbjct: 63 KTYFNASGGG-----------------VTFSG-GEPLLQPEFLLECLK-LCKKEGI---- 99 Query: 215 RRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274 TL T+G E ++ + + LV + P++ ++ + Sbjct: 100 -HTTLDTAGVGLGNYEEILEYVDLILFDVKETDPEKYKNLVKV----PIDKSLEFLK--V 152 Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327 S +++ +V++ G D+ D + + + G+ K+ L+P++ +Y Sbjct: 153 AQSMNKKMWIRHVVVPGYTDNKEDLMRIKNFVDGLNNIEKVELLPYHVLGVNKYE 207 >gi|229004086|ref|ZP_04161888.1| Radical SAM domain protein [Bacillus mycoides Rock1-4] gi|228757184|gb|EEM06427.1| Radical SAM domain protein [Bacillus mycoides Rock1-4] Length = 468 Score = 43.7 bits (102), Expect = 0.051, Method: Composition-based stats. Identities = 42/242 (17%), Positives = 87/242 (35%), Gaps = 27/242 (11%) Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168 + LC++ C+L+C +C+ K + R+++ G I+ Sbjct: 94 RQTYVKALCLNVAHTCNLSCEYCFASQGKYNGS-------------RAIMSYEVGKRAID 140 Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--P 226 ++ S + +I G GEPL + VK+ ++ A R T +T+G + Sbjct: 141 YLLENSGHHRNLDIDFFG-GEPLMAWKVVKQIVAYARSKEKEYKKTFRFTFTTNGMLLND 199 Query: 227 NIARV--GEEIGVMLAISLHAVSND-LRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283 I E V+L++ +D LR + K + ++ + + + Sbjct: 200 EITDFLNKEMYNVVLSLDGRKEVHDYLRK---TVTGKGSYDYIVPKFQEFVKSRGDKEYY 256 Query: 284 FEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK--DIVTFSECI 341 D D ++ + G K+++ P P Y +++ DI E + Sbjct: 257 VRGTYTHNNVDFTNDIFHIADL--GFD-KLSMEPVICNPREPYALTEKDLPDIYNQYEIL 313 Query: 342 KR 343 + Sbjct: 314 AK 315 >gi|332157839|ref|YP_004423118.1| hypothetical protein PNA2_0196 [Pyrococcus sp. NA2] gi|331033302|gb|AEC51114.1| hypothetical protein PNA2_0196 [Pyrococcus sp. NA2] Length = 419 Score = 43.7 bits (102), Expect = 0.052, Method: Composition-based stats. Identities = 42/247 (17%), Positives = 89/247 (36%), Gaps = 35/247 (14%) Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167 + ++ + V GC+++C FC R L V+ L+ F + Sbjct: 109 LIDRGTNLIQVRGSTGCNMSCIFCSVDEGPYSR----TRKLDFVVDVDYLMKWFNWVAEQ 164 Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-- 225 +G + + + GEPL + + + + D +S I++ ++G + Sbjct: 165 KGKGLEAH--------LDAQGEPLL-YPFIVELVQALRDHPNVSV----ISMQSNGVLLN 211 Query: 226 -PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF 284 + + E + +S+H++ + +L+ + Y LE +++ + Sbjct: 212 DKLVEELAEAGLDRVNLSIHSLDPEKAKMLMGR-KDYDLEHVLEMAEALVNA--GIDVLI 268 Query: 285 EYVMLKGINDSPRDALNLIKILKGIPA--------KINLIPFNPWPGCEYLCSDQKDIVT 336 V++ GIND+ A I+ + I A N IP+ Sbjct: 269 APVIIFGINDNE--AEAFIEFARKIGAGRRWPALGFQNYIPYKFGRNPVIAKPVP--FKE 324 Query: 337 FSECIKR 343 F E ++R Sbjct: 325 FYEWLRR 331 >gi|224543792|ref|ZP_03684331.1| hypothetical protein CATMIT_03013 [Catenibacterium mitsuokai DSM 15897] gi|224523283|gb|EEF92388.1| hypothetical protein CATMIT_03013 [Catenibacterium mitsuokai DSM 15897] Length = 255 Score = 43.7 bits (102), Expect = 0.054, Method: Composition-based stats. Identities = 31/242 (12%), Positives = 81/242 (33%), Gaps = 49/242 (20%) Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC C FC+ ++ P + K Sbjct: 37 HGCPFRCQFCHNPD---------------TWASQKFEEWTPQQALDRALRFEPYWGKDGG 81 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEEIG 236 I + G GEPL D + + +A + G++ + TSG P ++ E + Sbjct: 82 ITVSG-GEPLVQIDFLLEFFKLAKAA-GIN-----TCIDTSGACFTREEPFFSKFEELMK 134 Query: 237 VM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 L + + ++++ R+ ++ + ++D ++ ++ + I +V++ +D Sbjct: 135 YTDLLMVDIKEINDE-RHQVLTGASN---KRVLDMIQYLNDINKS--IWIRHVLVPERSD 188 Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSEC 340 D L + + K+ ++P++ ++ + + ++ Sbjct: 189 FDEDLHALADYIDTLSNVKKVEVLPYHTLGTYKWKELNLEYQLEGIDPPTNERVENANKI 248 Query: 341 IK 342 + Sbjct: 249 LH 250 >gi|242237965|ref|YP_002986146.1| nitrogenase cofactor biosynthesis protein NifB [Dickeya dadantii Ech703] gi|242130022|gb|ACS84324.1| nitrogenase cofactor biosynthesis protein NifB [Dickeya dadantii Ech703] Length = 468 Score = 43.7 bits (102), Expect = 0.054, Method: Composition-based stats. Identities = 31/203 (15%), Positives = 65/203 (32%), Gaps = 31/203 (15%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L C++C N + ++ ++L+ P + + + ++S + Sbjct: 54 CNLQCNYCNRKYD--CSNESRPGVVSELLM--------PEQAAAKARQVAAAIPQLSVVG 103 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEI--GVML 239 + G G+PL N +L + + ++ LST+G + R+ + V + Sbjct: 104 IAGPGDPLANMGRTFNTLELLRN----QLPDLKLCLSTNGLMLPDAVDRLLDVGVDHVTV 159 Query: 240 AISLHAVSNDLR--NILVPINRKYPLEMLIDACRHYPGL------SNARRITFEYVMLKG 291 ++ R L +Y + + V++ G Sbjct: 160 TLNTLDPDEAARIYAWLWLDGERYTGREAGEMLLARQQEGIRRLTEKGVLVKINSVLIPG 219 Query: 292 INDS-----PRDALNLIKILKGI 309 IND A L I Sbjct: 220 INDRSLLQVSEKAREWGAFLHNI 242 >gi|312116276|ref|YP_004013872.1| glycyl-radical enzyme activating protein family [Rhodomicrobium vannielii ATCC 17100] gi|311221405|gb|ADP72773.1| glycyl-radical enzyme activating protein family [Rhodomicrobium vannielii ATCC 17100] Length = 304 Score = 43.3 bits (101), Expect = 0.055, Method: Composition-based stats. Identities = 37/242 (15%), Positives = 75/242 (30%), Gaps = 45/242 (18%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C C R +T EE+ +V + G V S G ++ Sbjct: 95 CVSVCPQDARQLSG--RRMTVEEVSTEVRQ------HWRIFMQSGGGVTLSGGEVLAQPA 146 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP--NIARVGEEIGVMLAI 241 G + + D +G + T+GF+P N R+ I ++L Sbjct: 147 FAG---------ALLSA---LHDDLGF-----HTCVDTTGFLPWENFERLLPAIDLILLD 189 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 H + R N + +++ R + ++ ND+ + Sbjct: 190 LKHMDDSRHREATGIGNAR-----ILENARRLGER--GFPVFVRLPLISDYNDTDENLHA 242 Query: 302 LIKILKGI-PAKINLIPFNPWPGCEYLC-----SDQKDIV----TFSECIKRSGYSSPI- 350 L +K + A + ++P++ + +Y + I + + G S + Sbjct: 243 LGAFMKEVGLATLEILPYHEFGVSKYTALGKTYTVHSRIEPKADRAASILDDYGLSVTVA 302 Query: 351 RT 352 R Sbjct: 303 RR 304 >gi|253581396|ref|ZP_04858622.1| iron-sulfur dehydrogenase [Fusobacterium varium ATCC 27725] gi|251836760|gb|EES65294.1| iron-sulfur dehydrogenase [Fusobacterium varium ATCC 27725] Length = 282 Score = 43.3 bits (101), Expect = 0.055, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 70/189 (37%), Gaps = 23/189 (12%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C FC G LA E + K I Sbjct: 28 CNMNCVFCECGATPK--------------LADKREHFKDIKEVESEIKSVLKDVKPDYIT 73 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI--GVMLAI 241 G GEP + D + + ++ D+ + L T+ + N V E+ ++ Sbjct: 74 FSGSGEPTLSKD-LGEIINWIKDNT-----DANVCLITNSLLLNDDEVINEVLRADLIIP 127 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 +L++V +++ + + ++ + M++ + + N +I E +++G+ND Sbjct: 128 TLNSVDDEIFHKINRPSKDIHISMVMSGLQKLSAVYNG-KIYLETFIIEGLNDGEEHIKK 186 Query: 302 LIKILKGIP 310 + + LK I Sbjct: 187 MAEFLKTIK 195 >gi|269123081|ref|YP_003305658.1| pyruvate formate-lyase activating enzyme [Streptobacillus moniliformis DSM 12112] gi|268314407|gb|ACZ00781.1| pyruvate formate-lyase activating enzyme [Streptobacillus moniliformis DSM 12112] Length = 247 Score = 43.3 bits (101), Expect = 0.056, Method: Composition-based stats. Identities = 40/217 (18%), Positives = 77/217 (35%), Gaps = 47/217 (21%) Query: 123 GCSLTCSFCYT----GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 GC L C +C+ + R +T EE+ +++ R G Sbjct: 31 GCPLRCLYCHNVDTWNLKDHKRLMTPEEVFKEIMKVR--------------------GFI 70 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGE 233 + V + GEPL D + + G+ + TSG++ + + Sbjct: 71 KTGGVTVSGGEPLLQSDFIIELFK-LCKEAGI-----HTCIDTSGYIFTEKSKQAIELAD 124 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 VML + + + +L +N L+M Y N + YV++ G + Sbjct: 125 L--VML--DIKHIDQEKYKVLTSVNLAPTLKMA-----DYLESINK-PVWLRYVLVPGYS 174 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYLC 328 D P+D N K +++++PF+ ++ Sbjct: 175 DDPKDLDNWAKYCSKFKNVERVDILPFHQMGTPKWDK 211 >gi|157736727|ref|YP_001489410.1| quinohemoprotein amine dehydrogenase, putative SAM-radical dependent activating subunit [Arcobacter butzleri RM4018] gi|157698581|gb|ABV66741.1| quinohemoprotein amine dehydrogenase, putative SAM-radical dependent activating subunit [Arcobacter butzleri RM4018] Length = 457 Score = 43.3 bits (101), Expect = 0.056, Method: Composition-based stats. Identities = 41/197 (20%), Positives = 75/197 (38%), Gaps = 18/197 (9%) Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160 V+ E I L ++ GC+L+C++CY ++N + ++ ++ Sbjct: 75 VKEEETKIEHFPAKALVLNVTSGCNLSCTYCYKADLTSLKN--SGQMTFEI--------- 123 Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD---SMGLSFSKRRI 217 + I+ S K +I G GEPL N +K+ ++ A+D S GL + Sbjct: 124 --AKDAIDMFYKESPYLKEYSITFFG-GEPLSNLPLIKQIIAYANDFFESKGLKIG-YSM 179 Query: 218 TLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277 T + + + R E V L IS+ + V N K E + + Sbjct: 180 TSNATLLTDEVIRYLHESKVDLTISIDGPESLHNKTRVYENGKGSYEKVAKNVAKLLDIY 239 Query: 278 NARRITFEYVMLKGIND 294 R + + +G+ D Sbjct: 240 KNRTVGARVTLTRGVTD 256 >gi|212692834|ref|ZP_03300962.1| hypothetical protein BACDOR_02333 [Bacteroides dorei DSM 17855] gi|237724884|ref|ZP_04555365.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. D4] gi|265754729|ref|ZP_06089781.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. 3_1_33FAA] gi|212664623|gb|EEB25195.1| hypothetical protein BACDOR_02333 [Bacteroides dorei DSM 17855] gi|229436622|gb|EEO46699.1| pyruvate-formate lyase-activating enzyme [Bacteroides dorei 5_1_36/D4] gi|263234843|gb|EEZ20411.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. 3_1_33FAA] Length = 302 Score = 43.3 bits (101), Expect = 0.060, Method: Composition-based stats. Identities = 14/106 (13%), Positives = 34/106 (32%), Gaps = 19/106 (17%) Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK---INLIPF 318 P E++++ R +++G+N ++ + L +P INL+P+ Sbjct: 197 PNELILENIRRVAEA--GFPYYIRIPLIEGVNADEKNIKQSAEFLASLPRHPEIINLLPY 254 Query: 319 NPW--------------PGCEYLCSDQKDIVTFSECIKRSGYSSPI 350 + G + ++ + + G I Sbjct: 255 HDIGKGKHTKLGSIYNPKGYKMQTPSEEVQQQCIQILTDYGLKVTI 300 >gi|323705356|ref|ZP_08116931.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermoanaerobacterium xylanolyticum LX-11] gi|323535258|gb|EGB25034.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermoanaerobacterium xylanolyticum LX-11] Length = 473 Score = 43.3 bits (101), Expect = 0.061, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 88/243 (36%), Gaps = 33/243 (13%) Query: 72 YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131 +PEI+ E ++ D T +E + I V+ GC+ C++C Sbjct: 142 FPEILQEALNSDTTV------IDVWDDNSNIVEDIPIRRAEGLKAWVNIIYGCNNFCTYC 195 Query: 132 YTGT-QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 + R+ ++I+ ++ +SL + + G + S G +S V Sbjct: 196 IVPYVRGRERSREPKDIIDEI---KSLADEGFKEITLLGQNVNSYGNDLSQKVDFA---- 248 Query: 191 LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV---GEEIGVMLAISLHAVS 247 L + ++ G+ RI TS ++ ++ + LH Sbjct: 249 --------DLLYMINNINGI----ERIRFMTSHPKDISDKLIFAIRDLD-KVCEHLHLPV 295 Query: 248 NDLRNILV-PINRKYPLEMLIDACRHYPGLSNARRITFEYVM-LKGINDSP-RDALNLIK 304 N ++ +NRKY E ++ IT + ++ G D +D L+L+K Sbjct: 296 QSGSNRILEKMNRKYTRERYLEIIEKLRDNIPDIAITTDIIVGFPGETDEDFQDTLDLVK 355 Query: 305 ILK 307 +K Sbjct: 356 KVK 358 >gi|237709522|ref|ZP_04540003.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. 9_1_42FAA] gi|229456578|gb|EEO62299.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. 9_1_42FAA] Length = 300 Score = 43.3 bits (101), Expect = 0.061, Method: Composition-based stats. Identities = 14/106 (13%), Positives = 34/106 (32%), Gaps = 19/106 (17%) Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK---INLIPF 318 P E++++ R +++G+N ++ + L +P INL+P+ Sbjct: 195 PNELILENIRRVAEA--GFPYYIRIPLIEGVNADEKNIKQSAEFLASLPRHPEIINLLPY 252 Query: 319 NPW--------------PGCEYLCSDQKDIVTFSECIKRSGYSSPI 350 + G + ++ + + G I Sbjct: 253 HDIGKGKHTKLGSIYNPKGYKMQTPSEEVQQQCIQILTDYGLKVTI 298 >gi|307825620|ref|ZP_07655837.1| Radical SAM domain protein [Methylobacter tundripaludum SV96] gi|307733197|gb|EFO04057.1| Radical SAM domain protein [Methylobacter tundripaludum SV96] Length = 367 Score = 43.3 bits (101), Expect = 0.061, Method: Composition-based stats. Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 16/142 (11%) Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 R+ L + L AV+ ++RN ++P PLE +DA + ++ Y+ Sbjct: 221 FKRMKAAGIDSLGMHLEAVTPEVRNRIMPGKAGVPLERYMDAFDAAVSVFGRGEVS-TYI 279 Query: 288 MLKGINDSPRDALNLIKIL--KGI-PAKINLIPFNPWPGCEYLCSDQKDIVTFSE----C 340 + G+ D+ L++ K L KG+ P + IP P Y D + + + Sbjct: 280 L-AGLGDTVEAILSVSKQLIDKGVYPFVVPFIPITGTPLAHYPSPDPRFMQDILQPLGAM 338 Query: 341 IKRSGYSSPIRTPRGLDILAAC 362 +K++G R D+ A C Sbjct: 339 LKQAGL-------RSADMKAGC 353 >gi|289523143|ref|ZP_06439997.1| glutamate 5-kinase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503686|gb|EFD24850.1| glutamate 5-kinase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 329 Score = 43.3 bits (101), Expect = 0.062, Method: Composition-based stats. Identities = 29/204 (14%), Positives = 65/204 (31%), Gaps = 37/204 (18%) Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166 ++P +L VGC++ C FC Q + Sbjct: 67 FLPGMDVLSL---GSVGCNMRCPFC------------------QNWHISTWSPQIKLSRI 105 Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226 ++ V + V EPL +++ + +++ + ++ L T+G + Sbjct: 106 DPLELLSLVKKYNVTAVAFTYNEPLISYEYLLEAIPLLKKEN------VKVVLVTNGLIN 159 Query: 227 N--IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF 284 + + I + L + + L L+ ++ + S I Sbjct: 160 TLPLKEIAHRIDAA-NVDLKTFNEETYKKL-----GGDLKTVLKTLQ--ILKSFNVHIEI 211 Query: 285 EYVMLKGINDSPRDALNLIKILKG 308 ++++ GIND + L + G Sbjct: 212 THLLVTGINDDLGEFEALCSWIAG 235 >gi|301058540|ref|ZP_07199547.1| nitrogenase cofactor biosynthesis protein NifB [delta proteobacterium NaphS2] gi|300447386|gb|EFK11144.1| nitrogenase cofactor biosynthesis protein NifB [delta proteobacterium NaphS2] Length = 420 Score = 43.3 bits (101), Expect = 0.063, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 67/179 (37%), Gaps = 22/179 (12%) Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236 + IS + + G G+P N D ++L++ + + + G P I ++ + Sbjct: 71 KNISVVGIAGPGDPFANPDETMETLTLIREKYPEMI--CCLATNGLGIGPYIDQLADLNI 128 Query: 237 VMLAISLHAVSND--------LR--NILVPINRKYPL--EMLIDACRHYPGLSNARRITF 284 + I+L+A+ + +R L+ + + + E ++A Sbjct: 129 SHVTITLNAIDAEIGQKIYSYIRYGKKLLSPKKGFDILLEKQLEAIVRLKEK--GITTKI 186 Query: 285 EYVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEY---LCSDQKDIVTFSE 339 +++ GIN+ + + + + I N IPF P G + ++ + + Sbjct: 187 NSIIIPGINEH--HIPAVAEKMSEMGVDILNCIPFYPNKGAAFANLEEPSKEMVAEIRK 243 >gi|254172055|ref|ZP_04878731.1| radical SAM domain protein [Thermococcus sp. AM4] gi|214033951|gb|EEB74777.1| radical SAM domain protein [Thermococcus sp. AM4] Length = 419 Score = 43.3 bits (101), Expect = 0.063, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 82/230 (35%), Gaps = 25/230 (10%) Query: 85 TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTA 144 T++ +L + + ++ + + GC+L+C FC R Sbjct: 86 TKRKVLYIHEGLDVPLLGYNAFGLIDRGTNLIQIRGVSGCNLSCIFCSVDEGPYSR---- 141 Query: 145 EEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV--KKSLS 202 L V+ L+ F I+G + + + G GEPL V ++L Sbjct: 142 TRKLDYVVDIDYLMKWFDEVARIKGKGLEAH--------LDGQGEPLIYPFRVELVQALR 193 Query: 203 IASDSMGLSFSKR-RITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKY 261 S + TL T V + E + +S+H++ + +L+ + Y Sbjct: 194 --EHPNVSVISMQSNGTLLTDKLV---EELAEAGLDRVNLSIHSLDPEKAKMLM-GMKSY 247 Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311 LE +++ + V++ GIND +A I+ + I A Sbjct: 248 DLEHVLEMAEALVNA--GIDVLIAPVIIFGIND--DEAEAFIEFARKIGA 293 >gi|289192490|ref|YP_003458431.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22] gi|288938940|gb|ADC69695.1| Radical SAM domain protein [Methanocaldococcus sp. FS406-22] Length = 433 Score = 43.3 bits (101), Expect = 0.063, Method: Composition-based stats. Identities = 42/262 (16%), Positives = 91/262 (34%), Gaps = 49/262 (18%) Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167 + E+ R + V GC+L C FC + + D + Sbjct: 102 LIERGRNIIQVRGHCGCNLNCIFCSVDEGEFSK-----------TRKNDYYVDLDYLIEN 150 Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNF---DNVKKSLSIASDSMGLSFSKRRITLSTSGF 224 ++ K + G GEP + D V++ I G+ +++ T+G Sbjct: 151 YKKIVNFKENKFIEAHLDGQGEPSLYYPLVDLVQELAEINKKGNGI------VSMQTNGT 204 Query: 225 V---PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281 V I + E + +S++A ++ ++ R Y +E ++D + ++ Sbjct: 205 VLNYKLIDELAEAGLHRINLSINA-LDERMAKMLSGRRDYDIEKILDIAEYI--KNSKIH 261 Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKI--NLIPFNPWPGCE-----------YL- 327 + ++L IND + +I + ++ N+I NP G + Y Sbjct: 262 LLIAPLLLPNIND--EEFKRVIDYAVDLDLRVKQNII--NPLTGKKDPILGCQLCRVYQL 317 Query: 328 --CSDQKDI---VTFSECIKRS 344 + + F + +++ Sbjct: 318 GRRPKKMKVWDFEKFYDLLRKY 339 >gi|110800676|ref|YP_695803.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens ATCC 13124] gi|110675323|gb|ABG84310.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens ATCC 13124] Length = 235 Score = 43.3 bits (101), Expect = 0.064, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 86/235 (36%), Gaps = 36/235 (15%) Query: 98 GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLA 154 G +ET+ + + V Q GC + C+FC+ T + T EE++ ++ Sbjct: 4 GRIHSLETMGLVDGPGIRFVVFMQ-GCGIRCAFCHNPDTWCKDKGTEYTPEELVNKIKRF 62 Query: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSK 214 ++ G + G GEPL + + + L G+ Sbjct: 63 KTYFNASGGG-----------------VTFSG-GEPLLQPEFLLECLK-LCKKEGI---- 99 Query: 215 RRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274 TL T+G E ++ + + LV + P++ ++ + Sbjct: 100 -HTTLDTAGVGLGNYEEILEYVDLILFDVKETDPEKYKNLV----RVPIDKSLEFLK--V 152 Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327 S +++ +V++ G D+ D + + + G+ K+ L+P++ +Y Sbjct: 153 AQSMNKKMWIRHVVVPGYTDNKEDLMRIKNFVDGLNNIEKVELLPYHVLGVNKYE 207 >gi|110596760|ref|ZP_01385050.1| nitrogenase cofactor biosynthesis protein NifB [Chlorobium ferrooxidans DSM 13031] gi|110341447|gb|EAT59907.1| nitrogenase cofactor biosynthesis protein NifB [Chlorobium ferrooxidans DSM 13031] Length = 424 Score = 43.3 bits (101), Expect = 0.064, Method: Composition-based stats. Identities = 23/175 (13%), Positives = 63/175 (36%), Gaps = 25/175 (14%) Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVML 239 + + G G+P N + ++L + + + ++T+G +P I + E + Sbjct: 78 VGIAGPGDPFANPNETMETLRLVRAKY----PEMLLCVATNGLDLLPYIDELAELQVSHV 133 Query: 240 AISLHAVSNDLRNILVPINRKYP------------LEMLIDACRHYPGLSNARRITFEYV 287 I+++A+ ++ + + R + ++A + + Sbjct: 134 TITINAIDPEIGSEIYAWVRYNKKMYRDIDAARVLIGNQLEALKRLKEA--GVTAKVNSI 191 Query: 288 MLKGINDS--PRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSEC 340 ++ GIND+ A + ++ I N +P+ + + + +E Sbjct: 192 IIPGINDTHVIEVARKVAELGADIL---NCMPYYSTTETVFENIPEPSVDMVAEI 243 >gi|227494256|ref|ZP_03924572.1| [formate-C-acetyltransferase]-activating enzyme [Actinomyces coleocanis DSM 15436] gi|226831990|gb|EEH64373.1| [formate-C-acetyltransferase]-activating enzyme [Actinomyces coleocanis DSM 15436] Length = 296 Score = 43.3 bits (101), Expect = 0.065, Method: Composition-based stats. Identities = 43/245 (17%), Positives = 77/245 (31%), Gaps = 46/245 (18%) Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC L C +C+ +R+ TA V P Sbjct: 81 AGCPLRCLYCHNPDTMKMRDGTA------VYA--------DELIKRMERYAPVFKASNGG 126 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIG-VM 238 + G GEPL + K L A+ G+ + TSGF+ + E + V+ Sbjct: 127 VTFSG-GEPLMQPAFLLKLLK-AAKERGI-----HTAIDTSGFLGAHASDELLENVDLVL 179 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 L + + LE + R ++ RI +V++ G+ DS + Sbjct: 180 LDVKSGLPD------VYEKTTGRQLEPTLKFGRRLADMNK--RIWIRFVLVPGLTDSEEN 231 Query: 299 ALNLIKILKGIPA--KINLIPFNPWP-------GCEY-----LCSDQKDIVTFSECIKRS 344 + I+ + ++ ++PF+ G EY ++ E + Sbjct: 232 VNAVADIVASWESVERVEVLPFHQMARDKWAELGMEYELSDVQPPSKEAAEAAREIFRSR 291 Query: 345 GYSSP 349 G Sbjct: 292 GLLVF 296 >gi|225871377|ref|YP_002747324.1| pyruvate formate-lyase activating enzyme [Streptococcus equi subsp. equi 4047] gi|225700781|emb|CAW95452.1| putative pyruvate formate-lyase activating enzyme [Streptococcus equi subsp. equi 4047] Length = 257 Score = 43.3 bits (101), Expect = 0.065, Method: Composition-based stats. Identities = 43/256 (16%), Positives = 75/256 (29%), Gaps = 59/256 (23%) Query: 123 GCSLTCSFCYT------------GTQKLVRNL-----TAEEILLQVLLARSLLGDFPGCE 165 GC L C +C T L + T EEI+ +VL + G Sbjct: 29 GCPLRCPWCANPESQKTLPEKMLSTDGLKTEIVGQEKTVEEIIAEVLKDLDFYEESGGGM 88 Query: 166 DIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225 + G I + ++ E L ++ +F+K +V Sbjct: 89 TLSGGEIFAQFDFALALLKAAKAEGLH------TAIETT------AFAKHEQFAELINYV 136 Query: 226 PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFE 285 I + H +RN L+ N Y EM + P Sbjct: 137 DFIY--TDLKHYNR--LKHTKVTGVRNDLIIKNIHYAFEMGKEVVLRIP----------- 181 Query: 286 YVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEYL---CS---------DQK 332 ++ NDS DA ++ + + L+PF+ + +Y S + Sbjct: 182 --VIPNFNDSLEDAKAFSELFNQLNINQVQLLPFHQFGENKYKLLGRSYDMADAVAYHPE 239 Query: 333 DIVTFSECIKRSGYSS 348 D+V + + Sbjct: 240 DLVDYQQIFLNHHIHC 255 >gi|168214980|ref|ZP_02640605.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens CPE str. F4969] gi|170713601|gb|EDT25783.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens CPE str. F4969] Length = 235 Score = 43.3 bits (101), Expect = 0.065, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 88/235 (37%), Gaps = 36/235 (15%) Query: 98 GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLA 154 G +ET+ + + V Q GC + C+FC+ T + T EE++ ++ Sbjct: 4 GRIHSLETMGLVDGPGIRFVVFMQ-GCGIRCAFCHNPDTWCKDKGTEYTPEELVNKIKRF 62 Query: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSK 214 ++ G + G GEPL + + + L G+ Sbjct: 63 KTYFNASGGG-----------------VTFSG-GEPLLQPEFLLECLK-LCKKEGI---- 99 Query: 215 RRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274 TL T+G E ++ + + + LV + P++ ++ + Sbjct: 100 -HTTLDTAGVGLGNYEEILEYVDLILFDVKEIDPEKYKNLV----RVPIDKSLEFLK--V 152 Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327 S +++ +V++ G D+ D + + K + G+ K+ L+P++ +Y Sbjct: 153 AQSMNKKMWIRHVVVPGYTDNKEDLMRIKKFVDGLNNIEKVELLPYHVLGVNKYE 207 >gi|160937727|ref|ZP_02085087.1| hypothetical protein CLOBOL_02620 [Clostridium bolteae ATCC BAA-613] gi|158439372|gb|EDP17124.1| hypothetical protein CLOBOL_02620 [Clostridium bolteae ATCC BAA-613] Length = 259 Score = 43.3 bits (101), Expect = 0.065, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 83/248 (33%), Gaps = 38/248 (15%) Query: 88 WLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTA 144 +L + + IG IE+ + G V GC + C +C+ T K +TA Sbjct: 2 FLRKEHSLMIGRVHSIES-FGTVDGPGIRMVIFLSGCPMRCLYCHNPDTWDPKGGSPMTA 60 Query: 145 EEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIA 204 EEIL Q AR I + G GEPL V + A Sbjct: 61 EEILDQYEQARPFYKKG-------------------GITVSG-GEPLMQIGFVTELFEKA 100 Query: 205 SDSM---GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKY 261 S L S + + + R+ ++L + + + L Sbjct: 101 KKSGIHTCLDTSGITFNPGSQAVMAHFDRLLASTDLIL-LDIKHIDPKEHVKLCAQ---- 155 Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI---LKGIPAKINLIPF 318 + I A Y + +V++ GI D L + LK + A ++++P+ Sbjct: 156 -PQDNILAFAAYLEKK-QIPVWIRHVVVPGITDREEYLYRLGRYLGTLKNVKA-LDVLPY 212 Query: 319 NPWPGCEY 326 + +Y Sbjct: 213 HDMGKAKY 220 >gi|4325121|gb|AAD17269.1| NifB [Frankia sp. EuIK1] Length = 658 Score = 43.3 bits (101), Expect = 0.065, Method: Composition-based stats. Identities = 36/230 (15%), Positives = 86/230 (37%), Gaps = 47/230 (20%) Query: 118 VSSQVGCSLTCSFC-------YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 V+ GC++ C++C + +L E + Sbjct: 67 VAVAPGCNIQCNYCNRKYDCANESRPGVTSDLLTPE-----------------DALAKVK 109 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNI 228 ++ S +++S + + G G+PL N ++L + + ++ LST+G ++ Sbjct: 110 LVASEIKQMSVLGIAGPGDPLANPKRTFRTLELVARD----CPDIKLCLSTNGLTLPDHV 165 Query: 229 ARVGEEIGVMLAISLHAVSNDLRNILVPI----NRKYP--------LEMLIDACRHYPGL 276 R+ + I+++ + ++ ++ P +KY E ++ Sbjct: 166 DRIAALNVDHVTITINMIDPEVGELIYPWVAYKGKKYTGRERSKILSERQLEGLAMLAER 225 Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCE 325 ++ VM+ G+ND + + K ++G+ A + N++P P Sbjct: 226 KILAKVN--SVMIPGVND--EHLVEVSKTVRGLGAFLHNVMPLVSAPEHG 271 >gi|114566578|ref|YP_753732.1| pyruvate formate lyase activating enzyme [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337513|gb|ABI68361.1| pyruvate formate lyase activating enzyme [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 246 Score = 43.3 bits (101), Expect = 0.065, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 76/234 (32%), Gaps = 40/234 (17%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C +C+ N E+ L A+ + ++ P + Sbjct: 27 GCHLRCKYCH--------NPDTWELKS--LSAQEYSPE--ELMEVIRRSKPYFIASGGGL 74 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI- 241 G GEPL D+ K++ + + S + TS +V A + L + Sbjct: 75 TFSG-GEPLL-HDDFIKAVFLLCREE--NISTA---IDTSLYVKPAALLNVMPLTNLVLA 127 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 + ++ + L ++ L L S+ I YV++ D+ D Sbjct: 128 DIKHINEEKSRCLTGMSNSLNLSNLK------LIDSHDIPIWIRYVIIPAWTDALEDLEE 181 Query: 302 LIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECI 341 + + + +I+L+P++ ++ + + F I Sbjct: 182 MAAFVGQLEHVERIDLLPYHSLGKHKWDLLGYNYELNGVTTHSPEALEQFKNII 235 >gi|118444335|ref|YP_877304.1| glycerol dehydratase activator [Clostridium novyi NT] gi|118134791|gb|ABK61835.1| glycerol dehydratase activator [Clostridium novyi NT] Length = 304 Score = 43.3 bits (101), Expect = 0.065, Method: Composition-based stats. Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 16/84 (19%) Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKIN---LIPFNPWPGCEY------------ 326 I +++G N + ++ + K + K+N L+P++ + +Y Sbjct: 220 IIIRVPVIEGFNSDEKSIRDIAEFAKTLN-KVNRIDLLPYHSYGENKYETIGRNYFLKDL 278 Query: 327 LCSDQKDIVTFSECIKRSGYSSPI 350 + F + ++ G I Sbjct: 279 KPPSDDKMNYFKKIVEDMGLICTI 302 >gi|320526814|ref|ZP_08028004.1| pyruvate formate-lyase 1-activating enzyme [Solobacterium moorei F0204] gi|320132782|gb|EFW25322.1| pyruvate formate-lyase 1-activating enzyme [Solobacterium moorei F0204] Length = 242 Score = 43.3 bits (101), Expect = 0.066, Method: Composition-based stats. Identities = 35/242 (14%), Positives = 82/242 (33%), Gaps = 53/242 (21%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS-- 180 GC++ C +C+ N E+ G+ E++ + ++ Sbjct: 27 GCNMRCKYCH--------NPDTWEMAG---------GELYTAEEVLQKALRYKNYWVNGG 69 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEEI 235 I + G GE L D + + + G+ TL T+G P ++ + Sbjct: 70 GITVSG-GEALLQMDFMIELFE-LAHKQGI-----HCTLDTAGNPFTYEEPFFSKFERLM 122 Query: 236 GVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 V + L + + + L ++ I C Y + + +V++ GI Sbjct: 123 KVTDLVLFDLKEIDDKVHRYLTGVSN-----ENILECAKYLS-DHHIPMWIRHVLVPGIT 176 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSE 339 + D L + + + + ++ ++P++ +Y ++ I T + Sbjct: 177 ANKEDLQKLREFIDTLDSVERVEVLPYHVLGIPKYEKMGISYPLMDTPQPTKEQIETAEK 236 Query: 340 CI 341 + Sbjct: 237 IL 238 >gi|168185707|ref|ZP_02620342.1| pyruvate formate-lyase 2-activating enzyme [Clostridium botulinum C str. Eklund] gi|169296263|gb|EDS78396.1| pyruvate formate-lyase 2-activating enzyme [Clostridium botulinum C str. Eklund] Length = 304 Score = 43.3 bits (101), Expect = 0.067, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 16/84 (19%) Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKIN---LIPFNPWPGCEY------------ 326 I +++G N + ++ + K + K+N L+P++ + +Y Sbjct: 220 IIIRIPVIEGFNSDEKSIRDIAEFAKTLN-KVNRIDLLPYHSYGENKYETIGRNYFLKNL 278 Query: 327 LCSDQKDIVTFSECIKRSGYSSPI 350 I F E ++ G S I Sbjct: 279 KPPSNDKINYFKEIVEGMGLSCTI 302 >gi|167627832|ref|YP_001678332.1| lysine 2,3-aminomutase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597833|gb|ABZ87831.1| Lysine 2,3-aminomutase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 328 Score = 43.3 bits (101), Expect = 0.067, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 71/221 (32%), Gaps = 56/221 (25%) Query: 110 EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169 K G + + SQ C++ C +C+ N+ PG +D Sbjct: 97 HKYHGRVLLISQTSCAIHCRYCFRKEFDYKENI-------------------PGRKDWLK 137 Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKS----LSIASDSMGLSFSKRRITLSTSGFV 225 + V++ G+PL N D V + + S RI + Sbjct: 138 AFEYIANDQTIEEVILSGGDPLLNNDEVLEFFIENIQRISHIKRFRI-HSRIPV--VLPE 194 Query: 226 PNIARVG-----EEIGVMLAISLHAVS---NDLRNILVPINRKYPLEMLIDACRHYPGLS 277 R+ + +L I ++ + + +R +L I++ Sbjct: 195 RMTNRLLKILSEHRLDTVLVIHVNHPNELDDGIREVLKEIHK------------------ 236 Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318 + I + +LK IND L L I AK+ IP+ Sbjct: 237 HGIIILNQSTLLKDINDDANVLYALSTKL--INAKV--IPY 273 >gi|251780075|ref|ZP_04822995.1| glycyl-radical enzyme activating family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084390|gb|EES50280.1| glycyl-radical enzyme activating family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 310 Score = 43.3 bits (101), Expect = 0.068, Method: Composition-based stats. Identities = 30/198 (15%), Positives = 69/198 (34%), Gaps = 26/198 (13%) Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227 E S R+ + V + GEPL + +L I + T+ T+G+V Sbjct: 121 ELNKDSSQFRRSNGGVTLSGGEPLLQHEF---ALEILKGCKRIGI---HTTIETTGYVKK 174 Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 V L + N+ + + + +++ + L + I Sbjct: 175 EIFKKIAPWVDLVLLDIKTLNED-KHIKYVGASNKI--ILENAKSISELVTSTIIRVP-- 229 Query: 288 MLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEYLC-------------SDQK 332 ++ N + ++ K K + +I+L+P++ +Y C ++ Sbjct: 230 VIPQFNCDEKSIQDIAKFTKSLNNITEIHLLPYHKLGLNKYDCLGKEYLMKNDINTPSEE 289 Query: 333 DIVTFSECIKRSGYSSPI 350 ++ F + ++ G + I Sbjct: 290 VMLNFKKIVEDIGLTCNI 307 >gi|195978911|ref|YP_002124155.1| pyruvate formate-lyase activating enzyme [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975616|gb|ACG63142.1| pyruvate formate-lyase activating enzyme [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 289 Score = 43.3 bits (101), Expect = 0.068, Method: Composition-based stats. Identities = 43/256 (16%), Positives = 75/256 (29%), Gaps = 59/256 (23%) Query: 123 GCSLTCSFCYT------------GTQKLVRNL-----TAEEILLQVLLARSLLGDFPGCE 165 GC L C +C T L + T EEI+ +VL + G Sbjct: 61 GCPLRCPWCANPESQKTLPEKMLSTDGLKTEIVGQEKTVEEIIAEVLKDLDFYEESGGGM 120 Query: 166 DIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225 + G I + ++ E L ++ +F+K +V Sbjct: 121 TLSGGEIFAQFDFALALLKAAKAEGLH------TAIETT------AFAKHEQFAELINYV 168 Query: 226 PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFE 285 I + H +RN L+ N Y EM + P Sbjct: 169 DFIY--TDLKHYNR--LKHTKVTGVRNDLIIKNIHYAFEMGKEIVLRIP----------- 213 Query: 286 YVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEYL---CS---------DQK 332 ++ NDS DA ++ + + L+PF+ + +Y S + Sbjct: 214 --VIPNFNDSLEDAKAFSELFNQLNINQVQLLPFHQFGENKYKLLGRSYEMADVLAYHPE 271 Query: 333 DIVTFSECIKRSGYSS 348 D+V + + Sbjct: 272 DLVDYQQIFLNHHIHC 287 >gi|322385886|ref|ZP_08059528.1| pyruvate formate-lyase activating enzyme [Streptococcus cristatus ATCC 51100] gi|321270065|gb|EFX52983.1| pyruvate formate-lyase activating enzyme [Streptococcus cristatus ATCC 51100] Length = 265 Score = 43.3 bits (101), Expect = 0.069, Method: Composition-based stats. Identities = 34/213 (15%), Positives = 67/213 (31%), Gaps = 33/213 (15%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C +C+ N E+ E + I Sbjct: 37 GCHMRCQYCH--------NPDTWEM-----ETNKSQLRTVDDILQEALRYKGFWGNKGGI 83 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEEIGV 237 + G GE L D + + + L TL T + + + + V Sbjct: 84 TVSG-GEALLQIDFLIAF---FTKAKELGI---HCTLDTCALPFRNTPRYLEKFNKLMAV 136 Query: 238 M-LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 L + N+ ++ +V I AC Y + + +V++ G+ D Sbjct: 137 TDLVLLDIKEINEAQHRIVTTQTN----KNILACAKYLS-DIGKPVWIRHVLVPGLTDRD 191 Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327 D + L K +K + K ++P++ ++ Sbjct: 192 EDLIELGKFVKTLKNVDKFEILPYHTMGEFKWR 224 >gi|254167459|ref|ZP_04874311.1| radical SAM domain protein [Aciduliprofundum boonei T469] gi|197623722|gb|EDY36285.1| radical SAM domain protein [Aciduliprofundum boonei T469] Length = 366 Score = 43.3 bits (101), Expect = 0.069, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 64/201 (31%), Gaps = 50/201 (24%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C C +C +K+ R+ V+ A + +E +I + G I+ Sbjct: 48 CHAGCFYCPLSKEKMNRD---------VIFADEMPVHSDDDVLLEARLIDAEGTGITG-- 96 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST-SGFVPNIARVGE--------E 234 G+P+ D V + + D++G + I L T SG I ++ + Sbjct: 97 ----GDPIEMVDRVIHYIHLLKDNLGE---EHHIHLYTASGSKEKIEKLADVGLDEIRFH 149 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 L + + R + +E +D E + + D Sbjct: 150 PPPQLWTKMQGSIYEKRLN-------WAIESGMDTG-------------IEVPVFPDMKD 189 Query: 295 SPRDALNLIKILKGIPAKINL 315 + L+K + +NL Sbjct: 190 EL---IALVKFANDMGVFVNL 207 >gi|225869370|ref|YP_002745318.1| pyruvate formate-lyase activating enzyme [Streptococcus equi subsp. zooepidemicus] gi|225702646|emb|CAX00721.1| putative pyruvate formate-lyase activating enzyme [Streptococcus equi subsp. zooepidemicus] Length = 257 Score = 43.3 bits (101), Expect = 0.070, Method: Composition-based stats. Identities = 43/256 (16%), Positives = 75/256 (29%), Gaps = 59/256 (23%) Query: 123 GCSLTCSFCYT------------GTQKLVRNL-----TAEEILLQVLLARSLLGDFPGCE 165 GC L C +C T L + T EEI+ +VL + G Sbjct: 29 GCPLRCPWCANPESQKTLPEKMLSTDGLKTEIVGQEKTVEEIIAEVLKDLDFYEESGGGM 88 Query: 166 DIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225 + G I + ++ E L ++ +F+K +V Sbjct: 89 TLSGGEIFAQFDFALALLKAAKAEGLH------TAIETT------AFAKHEQFAELINYV 136 Query: 226 PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFE 285 I + H +RN L+ N Y EM + P Sbjct: 137 DFIY--TDLKHYNR--LKHTKVTGVRNDLIIKNIHYAFEMGKEIVLRIP----------- 181 Query: 286 YVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEYL---CS---------DQK 332 ++ NDS DA ++ + + L+PF+ + +Y S + Sbjct: 182 --VIPNFNDSLEDAKAFSELFNQLNINQVQLLPFHQFGENKYKLLGRSYEMADVLAYHPE 239 Query: 333 DIVTFSECIKRSGYSS 348 D+V + + Sbjct: 240 DLVDYQQIFLNHHIHC 255 >gi|229084333|ref|ZP_04216614.1| Radical SAM domain protein [Bacillus cereus Rock3-44] gi|228698990|gb|EEL51694.1| Radical SAM domain protein [Bacillus cereus Rock3-44] Length = 468 Score = 43.3 bits (101), Expect = 0.071, Method: Composition-based stats. Identities = 42/242 (17%), Positives = 86/242 (35%), Gaps = 27/242 (11%) Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168 + LC++ C+L+C +C+ K + R+++ G I+ Sbjct: 94 RKTYVKALCLNVAHTCNLSCEYCFASQGKYNGS-------------RAIMSYEVGKRAID 140 Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--P 226 ++ S + +I G GEPL + VK+ ++ A R T +T+G + Sbjct: 141 YLLENSGHHRNLDIDFFG-GEPLMAWKVVKQIVAYARSKEKEYKKTFRFTFTTNGMLLND 199 Query: 227 NIARVGEEIGVMLAISL---HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283 I + + +SL V N LR + K + ++ + + + Sbjct: 200 EITDFLNKEMYNVVLSLDGRKEVHNHLRK---TVTGKGSYDYIVPKFQKFVKKRGDKEYY 256 Query: 284 FEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK--DIVTFSECI 341 D D ++ + G K+++ P P Y +++ DI E + Sbjct: 257 VRGTYTHNNIDFTNDIFHIADL--GFD-KLSMEPVICNPREPYALTEEDLPDIYNQYEIL 313 Query: 342 KR 343 + Sbjct: 314 AK 315 >gi|21228570|ref|NP_634492.1| metallo cofactor biosynthesis protein [Methanosarcina mazei Go1] gi|20907062|gb|AAM32164.1| metallo cofactor biosynthesis protein [Methanosarcina mazei Go1] Length = 217 Score = 43.3 bits (101), Expect = 0.071, Method: Composition-based stats. Identities = 43/184 (23%), Positives = 64/184 (34%), Gaps = 25/184 (13%) Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167 I ++ L ++ CS C FC +RN V L P E+I Sbjct: 15 IYYEAHNNLYLNLTNRCSADCIFC-------IRNFADG-----VYGYNLRLSKEPSTEEI 62 Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG---- 223 + K IV G+GEP D V + GL R+ L T+G Sbjct: 63 IEALEGLDLSKYREIVFTGLGEPTLRLDVVLAVTRWL-KNQGL-----RVRLDTNGHAAL 116 Query: 224 FVPNIARVGEEIGVML---AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280 P + + E L ++SL+A S + N L K ++D R + Sbjct: 117 INPKLDVIAELKKAGLDSVSVSLNAESEEKYNKLCRPVHKNAYRAMLDFVRGAKEAGIST 176 Query: 281 RITF 284 R+T Sbjct: 177 RVTV 180 >gi|242399892|ref|YP_002995317.1| MooA-like molybdenum cofactor biosynthesis protein A related [Thermococcus sibiricus MM 739] gi|242266286|gb|ACS90968.1| MooA-like molybdenum cofactor biosynthesis protein A related [Thermococcus sibiricus MM 739] Length = 419 Score = 43.0 bits (100), Expect = 0.072, Method: Composition-based stats. Identities = 39/207 (18%), Positives = 79/207 (38%), Gaps = 25/207 (12%) Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167 + ++ + V GC+++C FC R IL V+ LL F Sbjct: 109 LIDRGTNLIQVRGSTGCNVSCIFCSVDEGPYSR----TRILDYVVDVDYLLKWFNEVAQF 164 Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-- 225 +G + + + G GEPL V + + + + I++ ++G + Sbjct: 165 KGKRLEAH--------LDGQGEPL-----VYPFIVELVQGLRENPNVSVISMQSNGALLN 211 Query: 226 -PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF 284 I + E + +S+H+ + +L+ + Y L +++ + F Sbjct: 212 DKLIEELAEAGLDRVNLSIHSFDPEKAKMLM-GMKDYDLNHVLEMAEALINA--GIDVLF 268 Query: 285 EYVMLKGINDSPRDALNLIKILKGIPA 311 V++ GIND +A + I+ + I A Sbjct: 269 APVIIFGIND--MEAESFIEFARKIGA 293 >gi|108803860|ref|YP_643797.1| GTP cyclohydrolase subunit MoaA [Rubrobacter xylanophilus DSM 9941] gi|108765103|gb|ABG03985.1| GTP cyclohydrolase subunit MoaA [Rubrobacter xylanophilus DSM 9941] Length = 328 Score = 43.0 bits (100), Expect = 0.072, Method: Composition-based stats. Identities = 33/212 (15%), Positives = 70/212 (33%), Gaps = 38/212 (17%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+ C +C K E++ + ++ + Sbjct: 23 CNFRCQYCMPEDIKFQ-----------------DKSHILTLEEMLTFAEACLALGVTKVR 65 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLAI 241 + G GEPL V K + + +T++T+G++ N+ + E + I Sbjct: 66 VTG-GEPLV-RRGVVKFVGWLKE-----LGFDEVTMTTNGYLLKENLEGLVEAGLDRINI 118 Query: 242 SLHAVSNDLRNILVPINRKYPL-EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 SL + + + N + + E ++ A + + V ++GIND + Sbjct: 119 SLDTLQPEKFAFITRRNHFHRVWEAIMAAL-----KTPLSPVKINAVAMRGIND--DEIP 171 Query: 301 NLIKILKGIPAKINLI---PFN-PWPGCEYLC 328 + ++ P + I P N G + Sbjct: 172 EMARLTLRYPMHVRFIELMPLNGDTDGSRFRK 203 >gi|171184989|ref|YP_001793908.1| radical SAM domain-containing protein [Thermoproteus neutrophilus V24Sta] gi|170934201|gb|ACB39462.1| Radical SAM domain protein [Thermoproteus neutrophilus V24Sta] Length = 266 Score = 43.0 bits (100), Expect = 0.072, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 78/231 (33%), Gaps = 53/231 (22%) Query: 123 GCSLTCSFCYTGT----------QKLV--RNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 GC+ C +C L R+LT E++ V S L + E + G Sbjct: 22 GCNYVCPWCIRRLTPWDHHLPDAGGLKTRRHLTLGELVEVV----SGLRERGAVEAVLGG 77 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR 230 P+V ++ +V G + + I + G S S+ + + Sbjct: 78 GEPTVDPELPQVVKTLAG---------LR-VRILT--NGFSISEELLGV----------- 114 Query: 231 VGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 + + +S+ + L + PL ++ + + FE V++ Sbjct: 115 LRSCPACEVVVSVKTLDPA--RHLAYTGK--PLGPVLANVKRLVEA--GVAVKFETVLIP 168 Query: 291 GINDSPRDALNLIKIL---KGIPAKINLI--PFNPWPGCEYLCSDQKDIVT 336 G+ND D + + + G A LI P P PG + +++ Sbjct: 169 GLND-VEDVEEIARYIGEVAGPDAV--LIIDPLIPIPGTPWRRPAPEEVEE 216 >gi|256545363|ref|ZP_05472726.1| radical SAM domain protein [Anaerococcus vaginalis ATCC 51170] gi|256398924|gb|EEU12538.1| radical SAM domain protein [Anaerococcus vaginalis ATCC 51170] Length = 461 Score = 43.0 bits (100), Expect = 0.076, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 77/224 (34%), Gaps = 27/224 (12%) Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168 + +C++ C+L+C +C+ R E I + D I+ Sbjct: 91 RKTYLKAMCLNVSHTCNLSCEYCFAKEG---RYHGPEAI----------MTDEVAKRSID 137 Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD-SMGLSFSKRRITLSTSGFV-- 225 ++ S +I G GEPL N+D VK +++ A + TL+T+G + Sbjct: 138 FLLENSGSHFNLDIDFFG-GEPLLNWDLVKNTVNYARSKEKEFN-KHFNFTLTTNGMLLD 195 Query: 226 -PNIARVGEEIG-VMLAISLHAV-SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI 282 I + + + V+L++ ++ R + K + ++ + + Sbjct: 196 DEKIEYLNKNMKNVVLSLDGRKEKHDEFRK---THDGKGSFDKIVPKFQKLVKNRGDKEY 252 Query: 283 TFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 D D + + G + +L P +Y Sbjct: 253 YMRGTFTANNLDFTEDIKTYLDL--GFK-RTSLEPVVGNNEEDY 293 >gi|187933302|ref|YP_001886033.1| pyruvate formate-lyase-activating enzyme [Clostridium botulinum B str. Eklund 17B] gi|187721455|gb|ACD22676.1| pyruvate formate-lyase-activating enzyme [Clostridium botulinum B str. Eklund 17B] Length = 310 Score = 43.0 bits (100), Expect = 0.077, Method: Composition-based stats. Identities = 30/198 (15%), Positives = 69/198 (34%), Gaps = 26/198 (13%) Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227 E S R+ + V + GEPL + +L I + T+ T+G+V Sbjct: 121 ELNKDSSQFRRSNGGVTLSGGEPLLQHEF---ALEILKGCKSIGI---HTTIETTGYVDK 174 Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 V L + N+ + + + +++ + L + I Sbjct: 175 EILKKIAPWVDLVLLDIKTLNED-KHIKYVGASNKI--ILENAKSISELVTSTIIRVP-- 229 Query: 288 MLKGINDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEYLC-------------SDQK 332 ++ N + ++ K K + +I+L+P++ +Y C ++ Sbjct: 230 VIPQFNCDEKSIQDIAKFTKSLNNITEIHLLPYHKLGLNKYDCLGKEYLMKNDINTPSEE 289 Query: 333 DIVTFSECIKRSGYSSPI 350 ++ F + ++ G + I Sbjct: 290 VMLNFKKIVEDIGLTCNI 307 >gi|262283214|ref|ZP_06060981.1| pyruvate formate-lyase-activating enzyme [Streptococcus sp. 2_1_36FAA] gi|262261466|gb|EEY80165.1| pyruvate formate-lyase-activating enzyme [Streptococcus sp. 2_1_36FAA] Length = 269 Score = 43.0 bits (100), Expect = 0.081, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 68/214 (31%), Gaps = 35/214 (16%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C +C+ N E+ E + I Sbjct: 41 GCHMRCQYCH--------NPDTWEM-----ETNKSQLRTVDDVLQEALRYKGFWGNKGGI 87 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF-----VPNIARVGEEIGV 237 + G GE L D + + + L TL T + + + + V Sbjct: 88 TVSG-GEALLQIDFLIAF---FTKAKELGI---HCTLDTCALPFRNTPRYLKKFDKLMAV 140 Query: 238 M--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 + + + ++ + I+ K I AC Y + + +V++ G+ D Sbjct: 141 TDLVLLDIKEINEEQHRIVTSQTNKN-----ILACAKYLS-DIGKPVWIRHVLVPGLTDR 194 Query: 296 PRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327 D + L K +K + K ++P++ ++ Sbjct: 195 DDDLIELGKFVKTLKNVDKFEILPYHTMGEFKWR 228 >gi|313896110|ref|ZP_07829664.1| six-Cys-in-45 modification radical SAM protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312975535|gb|EFR40996.1| six-Cys-in-45 modification radical SAM protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 468 Score = 43.0 bits (100), Expect = 0.081, Method: Composition-based stats. Identities = 31/192 (16%), Positives = 67/192 (34%), Gaps = 20/192 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 +LC+ C+L C +C+ + R+++ G ++ ++ Sbjct: 94 SLCLMVAQDCNLRCKYCFGDGGSYGGH-------------RAIMSPEVGRAAVDFIINGC 140 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234 RK I G GEPL N VK+ S + ++TL+T+G + + + Sbjct: 141 GPRKHCEIDFFG-GEPLMNLRTVKEVTEYVRKREQESGKEFKLTLTTNGMLLSDKNIAWL 199 Query: 235 IGVMLAISLHAVSNDLR----NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 +++ L + + R ++ + ++++ R + Sbjct: 200 NDNNISVVLSS--DGRREVHDSMRPDSAGQGTYDIVMRNFRKLVEARGGNDYYLRGTYTR 257 Query: 291 GINDSPRDALNL 302 D +D L L Sbjct: 258 ENLDFTKDVLAL 269 >gi|167759297|ref|ZP_02431424.1| hypothetical protein CLOSCI_01644 [Clostridium scindens ATCC 35704] gi|167663171|gb|EDS07301.1| hypothetical protein CLOSCI_01644 [Clostridium scindens ATCC 35704] Length = 302 Score = 43.0 bits (100), Expect = 0.081, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 34/82 (41%), Gaps = 15/82 (18%) Query: 281 RITFEYVMLKGINDSPRDALNLIKILKGIPAKI---NLIPFNPWPGCEYLC--------- 328 RI +K +N + D +IK L+ ++ NL+P++ +Y Sbjct: 215 RIYIRIPTIKEVNGTDEDMKAMIKYLQEKNIRVANINLLPYHNTGSGKYEKIGRTYDGTE 274 Query: 329 ---SDQKDIVTFSECIKRSGYS 347 +++++ F + K SG+ Sbjct: 275 LHAPEKEEMEHFVDLFKESGFH 296 >gi|154149425|ref|YP_001406820.1| radical SAM domain-containing protein [Campylobacter hominis ATCC BAA-381] gi|153805434|gb|ABS52441.1| radical SAM domain protein [Campylobacter hominis ATCC BAA-381] Length = 300 Score = 43.0 bits (100), Expect = 0.081, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 87/230 (37%), Gaps = 34/230 (14%) Query: 124 CSLTCSFCYTGTQKLVRNLT----AEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 C+ C +C ++ + ++ +EIL ++ + L +F G E Sbjct: 30 CNFNCLYCELSKKRAISEMSEIAPVDEILNEI---KKGLKEFNGVEV------------- 73 Query: 180 SNIVMMGMGEP-LCNFDNVKKSLSIASDSMGLSFSKRRITLS-TSGFVPNIARVGEEIGV 237 + + GEP L + + + L+ S + + LS S N + + V Sbjct: 74 --LTITANGEPTLYPY-----FSELINSIKKLNISPKLLILSNASKIAENFDDLLKFDIV 126 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 SL A ++ + +K + +I+ + + E +++ INDS Sbjct: 127 K--FSLDAACEEIFKKI-DNPKKVQISKIIENIIKFRQKFTGMLV-IEILVVSDINDSED 182 Query: 298 DALNLIKILKGIPA-KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGY 346 + NL K L+ I A ++++ + P + + + +E +K+ Sbjct: 183 EFKNLAKALRDIKANRVDIGTIDRPPAFDCKAVSLERLNELAEILKKENI 232 >gi|225028851|ref|ZP_03718043.1| hypothetical protein EUBHAL_03138 [Eubacterium hallii DSM 3353] gi|224953825|gb|EEG35034.1| hypothetical protein EUBHAL_03138 [Eubacterium hallii DSM 3353] Length = 250 Score = 43.0 bits (100), Expect = 0.084, Method: Composition-based stats. Identities = 34/240 (14%), Positives = 77/240 (32%), Gaps = 46/240 (19%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C FC+ N ++ + + + + + I Sbjct: 34 GCPLRCQFCH--------NPDTWKMTEE----NGAIWKNAEELLNQALRYRPYWKNGGGI 81 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEEIGV 237 + G GEPL D + + A G+ + T+G P ++ E + Sbjct: 82 TVSG-GEPLLQIDFMLEFFKKA-KEKGI-----HTVIDTAGGPFTRKEPFFSKFQELMKY 134 Query: 238 M--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 L + + + + +L + E ++D R+ + I +V++ +D Sbjct: 135 TDLLLVDIKHIDTECHKVLTGHSN----ENILDMIRYLSDIKK--PIWIRHVLVPERSDK 188 Query: 296 PRDALNLIKILKGIPA--KINLIPFNPWP-------GCEY-----LCSDQKDIVTFSECI 341 L + + K+ ++P++ G EY ++ + + + Sbjct: 189 DEYLTRLADFIHSLDNVEKVEILPYHTMGIYKWKELGLEYPLEGIQPPTKERVKNAKKIL 248 >gi|206895616|ref|YP_002247217.1| Fe-S oxidoreductase [Coprothermobacter proteolyticus DSM 5265] gi|206738233|gb|ACI17311.1| Fe-S oxidoreductase [Coprothermobacter proteolyticus DSM 5265] Length = 388 Score = 43.0 bits (100), Expect = 0.084, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 87/224 (38%), Gaps = 30/224 (13%) Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ-KLVRNLTAEEILLQVLLARSLLGDFPGCE 165 + P++SRG V + GC+ C++C + + VR+ EIL ++ L Sbjct: 112 FYPDRSRGF--VKVEEGCNWRCTYCVSSLERGEVRSRPLGEILQEIRLMSE--------- 160 Query: 166 DIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225 I V +N+++ GE N+ ++ + +S + R+ LS+ Sbjct: 161 ----RGISEVVLTGTNLMLWREGE--KNYLDLIECVSKVAAEY-----NMRVRLSSVYPE 209 Query: 226 PNIARVGEEIGVM-LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF 284 AR+ E V LA LH + ++ + PL L L + T Sbjct: 210 MINARMIELFCVYPLARHLHISLQSASDKVLKSMNRAPLGDLTQMLLQLRNLDSGFAFTA 269 Query: 285 EYVM---LKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCE 325 + ++ + + DS L + +K+++ PF+ PG Sbjct: 270 DIIVGYPTETVQDSLMTMSFLSDL---RFSKVHVFPFSVRPGTP 310 >gi|332362280|gb|EGJ40080.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis SK1056] Length = 269 Score = 43.0 bits (100), Expect = 0.085, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 68/214 (31%), Gaps = 35/214 (16%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C +C+ N E+ E + I Sbjct: 41 GCHMRCQYCH--------NPDTWEM-----ETNKSQLRTVDDVLQEALRYKGFWGNKGGI 87 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF-----VPNIARVGEEIGV 237 + G GE L D + + + L TL T + + + + V Sbjct: 88 TVSG-GEALLQIDFLIAF---FTKAKELGI---HCTLDTCALPFRNTPRYLKKFDKLMAV 140 Query: 238 M--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 + + + ++ + I+ K I AC Y + + +V++ G+ D Sbjct: 141 TDLVLLDIKEINEEQHKIVTSQTNKN-----ILACAKYLS-DIGKPVWIRHVLVPGLTDR 194 Query: 296 PRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327 D + L K +K + K ++P++ ++ Sbjct: 195 DDDLIELGKFVKTLKNVDKFEILPYHTMGEFKWR 228 >gi|323351046|ref|ZP_08086703.1| pyruvate formate-lyase activating enzyme [Streptococcus sanguinis VMC66] gi|322122770|gb|EFX94479.1| pyruvate formate-lyase activating enzyme [Streptococcus sanguinis VMC66] gi|324991334|gb|EGC23267.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis SK353] gi|325687086|gb|EGD29109.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis SK72] gi|327462052|gb|EGF08381.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis SK1057] gi|327474565|gb|EGF19970.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis SK408] gi|328946888|gb|EGG41025.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis SK1087] Length = 269 Score = 43.0 bits (100), Expect = 0.085, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 68/214 (31%), Gaps = 35/214 (16%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C +C+ N E+ E + I Sbjct: 41 GCHMRCQYCH--------NPDTWEM-----ETNKSQLRTVDDVLQEALRYKGFWGNKGGI 87 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF-----VPNIARVGEEIGV 237 + G GE L D + + + L TL T + + + + V Sbjct: 88 TVSG-GEALLQIDFLIAF---FTKAKELGI---HCTLDTCALPFRNTPRYLKKFDKLMAV 140 Query: 238 M--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 + + + ++ + I+ K I AC Y + + +V++ G+ D Sbjct: 141 TDLVLLDIKEINEEQHKIVTSQTNKN-----ILACAKYLS-DIGKPVWIRHVLVPGLTDR 194 Query: 296 PRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327 D + L K +K + K ++P++ ++ Sbjct: 195 DDDLIELGKFVKTLKNVDKFEILPYHTMGEFKWR 228 >gi|4106382|gb|AAD02826.1| pyruvate formate-lyase 1 activating enzyme [Pasteurella multocida] Length = 246 Score = 43.0 bits (100), Expect = 0.085, Method: Composition-based stats. Identities = 13/91 (14%), Positives = 31/91 (34%), Gaps = 15/91 (16%) Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL-- 327 Y N + YV++ G D+ D L +K + K+ L+P++ ++ Sbjct: 155 QYLAKRNQ-PVWIRYVVVPGYTDADEDIHLLGHFIKDMKNIEKVELLPYHRLGAHKWEAM 213 Query: 328 ----------CSDQKDIVTFSECIKRSGYSS 348 ++ + ++ G+ Sbjct: 214 GEKYELEEVNPPTKESLEHIKSILESYGHIV 244 >gi|239813579|ref|YP_002942489.1| radical SAM protein [Variovorax paradoxus S110] gi|239800156|gb|ACS17223.1| Radical SAM domain protein [Variovorax paradoxus S110] Length = 360 Score = 43.0 bits (100), Expect = 0.087, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 51/133 (38%), Gaps = 16/133 (12%) Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 L + L V+ ++R ++P P+ + A + +++ Y++ G+ D+ Sbjct: 220 TLGMHLEVVTPEVRERIMPGKASVPVSRYMSAFEAAVRVFGRGQVS-TYIL-AGLGDTRE 277 Query: 298 DA----LNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFSECIKRSGYSSPI 350 L + +G+ + +PF P G + + + + ++ + Sbjct: 278 AILDTCDQL--LARGVYPFV--VPFVPISGTPLEDHPAPSPEFMKSLLAPLGERVVAAGL 333 Query: 351 RTPRGLDILAACG 363 R+ DI A CG Sbjct: 334 RS---ADIKAGCG 343 >gi|254417247|ref|ZP_05030991.1| pyruvate formate-lyase 1-activating enzyme [Microcoleus chthonoplastes PCC 7420] gi|196175900|gb|EDX70920.1| pyruvate formate-lyase 1-activating enzyme [Microcoleus chthonoplastes PCC 7420] Length = 257 Score = 43.0 bits (100), Expect = 0.087, Method: Composition-based stats. Identities = 38/243 (15%), Positives = 77/243 (31%), Gaps = 46/243 (18%) Query: 123 GCSLTCSFCYTGTQKLVR---NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC L C +C+ + +R +T +E++ Q+ RS + G I G Sbjct: 43 GCPLRCLYCHNPDSRCIREGQEVTVDELMTQIPKYRSYMRFSGGGVTITG---------- 92 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 GEPL + V++ G+ L TSG+V V L Sbjct: 93 --------GEPLMQPEFVREIFRR-CQDQGI-----HTALDTSGYVNLDVAKPVLDHVDL 138 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 + + + LE + ++ + +V++ ++D+ Sbjct: 139 VLLDIKSFDP---KIYFKITNVSLEPTLAFAQYLSEIKK--PTWIRFVLVPNLSDNLESI 193 Query: 300 LNLIKILKGIPAKIN--LIPFNPWPGCEYLC------------SDQKDIVTFSECIKRSG 345 L + + + N ++PF+ ++ + + E +R G Sbjct: 194 EGLAQFVSSLGNVENVEILPFHKMGEYKWQQLGYDYQLKDTPSPTPQQVQQVMEIFQRQG 253 Query: 346 YSS 348 Sbjct: 254 LHV 256 >gi|325693826|gb|EGD35745.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis SK150] Length = 267 Score = 43.0 bits (100), Expect = 0.088, Method: Composition-based stats. Identities = 40/267 (14%), Positives = 79/267 (29%), Gaps = 81/267 (30%) Query: 123 GCSLTCSFCY-------------------TGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163 GC L C +C + T R + EEI+ +VL R + G Sbjct: 39 GCPLRCPWCSNPESQQFRPEPMLDATTKKSITMGEER--SVEEIINEVLKDRDFYEESGG 96 Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223 + G I + K++ A+ G+ + T+ Sbjct: 97 GLTLSGGEIFAQFE-------------------FAKAILKAAKEKGI-----HTAIETTA 132 Query: 224 FVPNIARVGEEIGV--MLAISL-------HAVSNDLRNILVPINRKYPLEMLIDACRHYP 274 FV + + + I + L H ++N L+ N Y Sbjct: 133 FVEH-EKFVDLIQYVDFIYTDLKHYNSVNHRKVTGVKNELIVQNIHY------------- 178 Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEY------- 326 ++ + I ++ NDS DA + + + L+PF+ + +Y Sbjct: 179 AFTHQKTIVLRIPVIPDFNDSLEDAEQFATLFNELSINQVQLLPFHQFGENKYKLLGRKY 238 Query: 327 -----LCSDQKDIVTFSECIKRSGYSS 348 +D+ + + + + Sbjct: 239 AMEDVKALHPEDLFEYQDVFLKHDINC 265 >gi|126697219|ref|YP_001092105.1| putative organic radical activating protein [Prochlorococcus marinus str. MIT 9301] gi|126544262|gb|ABO18504.1| possible organic radical activating enzyme [Prochlorococcus marinus str. MIT 9301] Length = 223 Score = 43.0 bits (100), Expect = 0.088, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 27/107 (25%) Query: 122 VGCSLTCSFCYTG---TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 GC + CS+C T +K +++ E+I+ ++ +AR F Sbjct: 31 AGCKVGCSWCDTKNSWDEKKYPSISIEKIIDRIKIAREKGASF----------------- 73 Query: 179 ISNIVMMGMGEPL-CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF 224 V+ G GEPL N DN K++ + MG +I + TSG Sbjct: 74 ---CVITG-GEPLQHNLDNFCKAIKKMT--MGEELKPMKIHIETSGV 114 >gi|153954374|ref|YP_001395139.1| NifB2 [Clostridium kluyveri DSM 555] gi|146347255|gb|EDK33791.1| NifB2 [Clostridium kluyveri DSM 555] Length = 448 Score = 43.0 bits (100), Expect = 0.089, Method: Composition-based stats. Identities = 46/220 (20%), Positives = 86/220 (39%), Gaps = 35/220 (15%) Query: 124 CSLTCSFCYTGTQ--KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 C+++C++C R EIL P + V+ S + ++ Sbjct: 50 CNISCNYCSRKYDCANESRPGVTSEILS------------PEEALEKFKVVKSNMKSLTV 97 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI-TLSTSGFVPNIA--RVGEEIGVM 238 + + G G+ L NF V+KSL++ + S I LST+G + + + + Sbjct: 98 VGIAGPGDALANFQEVRKSLTLIREE-----SPETIFCLSTNGLMLPLYANELIKLGVSH 152 Query: 239 LAISLHAVSNDLRNILVP----INRKYPLEMLIDACRHYPGL------SNARRITFEYVM 288 + ++++AV + + + KY E + S+ VM Sbjct: 153 VTVTINAVDKKIGAKIYKEVNYLGHKYVGEEGAEILLDNQLKGLSYLCSSGVVCKVNIVM 212 Query: 289 LKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEYL 327 LKGIND + ++K +K A + N++ P PG + Sbjct: 213 LKGIND--KHIKEVVKRVKECGAYMTNIMQMIPVPGSRFE 250 >gi|194336995|ref|YP_002018789.1| nitrogenase cofactor biosynthesis protein NifB [Pelodictyon phaeoclathratiforme BU-1] gi|194309472|gb|ACF44172.1| nitrogenase cofactor biosynthesis protein NifB [Pelodictyon phaeoclathratiforme BU-1] Length = 423 Score = 43.0 bits (100), Expect = 0.090, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 59/162 (36%), Gaps = 25/162 (15%) Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVML 239 + + G G+P N D ++L + + + ++T+G P I + E + Sbjct: 78 VGIAGPGDPFANPDETMETLRLVRAKY----PEMLLCMATNGLDLAPYIDELAELQVSHV 133 Query: 240 AISLHAVSNDLRNILVPINRKYP------------LEMLIDACRHYPGLSNARRITFEYV 287 I+++A+ + + + R ++ ++A + + + Sbjct: 134 TITINAIDPVIGSEIYAWVRHNKKMYRDLDAAKLLIDKQLEALKKL--KAAGITAKVNSI 191 Query: 288 MLKGINDS--PRDALNLIKILKGIPAKINLIPFNPWPGCEYL 327 ++ GIND+ A + ++ I N +P+ + Sbjct: 192 IIPGINDNHVIEVARKVAELGADIL---NCMPYYSTTETVFE 230 >gi|327311467|ref|YP_004338364.1| putative molybdenum cofactor biosynthesis protein A [Thermoproteus uzoniensis 768-20] gi|326947946|gb|AEA13052.1| putative molybdenum cofactor biosynthesis protein A [Thermoproteus uzoniensis 768-20] Length = 341 Score = 43.0 bits (100), Expect = 0.091, Method: Composition-based stats. Identities = 40/217 (18%), Positives = 77/217 (35%), Gaps = 33/217 (15%) Query: 106 VYIPEKSRGTLCVSSQVG--CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163 V + R L + V C+ +C FC+ Q+ +G Sbjct: 28 VLVDRYGRPFLKLRVAVNDVCNFSCIFCHFE--------------GQL----RGVGRLLN 69 Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223 +D +V + + + G GEPL D V + + I+++T+G Sbjct: 70 ADDYGFLVDVLSKVGVRDYKLTG-GEPLLRSDIV-DIVRKMNRD------GVEISMTTNG 121 Query: 224 FVPNIARVGEEIG--VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281 F + +S+H + + + + +++ ++D + + Sbjct: 122 FRLAELAEDLAAAGLRRVNVSVHTTDPEKFSKVAGVPKEW-FRRVLDGVH--AAVKAGMK 178 Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318 + V+LKGIND +L+K+ I A I LI Sbjct: 179 VKLNAVLLKGINDDRESLRSLVKLAASIGASIQLIEL 215 >gi|324993692|gb|EGC25611.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis SK405] gi|324994995|gb|EGC26908.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis SK678] gi|327462962|gb|EGF09283.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis SK1] Length = 269 Score = 43.0 bits (100), Expect = 0.091, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 68/214 (31%), Gaps = 35/214 (16%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C +C+ N E+ E + I Sbjct: 41 GCHMRCQYCH--------NPDTWEM-----ETNKSQLRTVDDVLQEALRYKGFWGNKGGI 87 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF-----VPNIARVGEEIGV 237 + G GE L D + + + L TL T + + + + V Sbjct: 88 TVSG-GEALLQIDFLIAF---FTKAKELGI---HCTLDTCALPFRNTPRYLKKFDKLMAV 140 Query: 238 M--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 + + + ++ + I+ K I AC Y + + +V++ G+ D Sbjct: 141 TDLVLLDIKEINEEQHKIVTSQTNKN-----ILACAKYLS-DIGKPVWIRHVLVPGLTDR 194 Query: 296 PRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327 D + L K +K + K ++P++ ++ Sbjct: 195 DDDLIELGKFVKTLKNVDKFEILPYHTMGEFKWR 228 >gi|328472254|gb|EGF43124.1| lysine 2,3-aminomutase [Vibrio parahaemolyticus 10329] Length = 340 Score = 43.0 bits (100), Expect = 0.092, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 66/221 (29%), Gaps = 46/221 (20%) Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153 I + K+R + V GC++ C +C R+ +E Sbjct: 92 DPLDEQDNAIPGLLHKYKNRVLMIVKG--GCAVNCRYC------FRRHFPYQE------- 136 Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213 + G + + + N V+ G+PL D + + Sbjct: 137 ------NKSGKQAWSQCIEYMAEKPELNEVIFSGGDPLMAKD---DEIHWLLE------- 180 Query: 214 KRRITLSTSGFVPNIARVGEE------IGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267 +P+I R+ I + L + R ++ + + Sbjct: 181 -------HIAQIPHIKRLRIHSRLPVVIPARITDELCQLLKASRLQIILVTHINHANEIN 233 Query: 268 DACRHYPGLSNARRITF--EYVMLKGINDSPRDALNLIKIL 306 D R +T + V+LKG+NDS + L + L Sbjct: 234 DELRQAMKKLKEANVTLLNQGVLLKGVNDSVDALIQLSEAL 274 >gi|157151404|ref|YP_001450926.1| pyruvate formate-lyase-activating enzyme [Streptococcus gordonii str. Challis substr. CH1] gi|157076198|gb|ABV10881.1| pyruvate formate-lyase-activating enzyme [Streptococcus gordonii str. Challis substr. CH1] Length = 269 Score = 43.0 bits (100), Expect = 0.092, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 68/214 (31%), Gaps = 35/214 (16%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C +C+ N E+ E + I Sbjct: 41 GCHMRCQYCH--------NPDTWEM-----ETNKSQLRTVDDVLQEALRYKGFWGNKGGI 87 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF-----VPNIARVGEEIGV 237 + G GE L D + + + L TL T + + + + V Sbjct: 88 TVSG-GEALLQIDFLIAF---FTKAKELGI---HCTLDTCALPFRNTPRYLKKFDKLMAV 140 Query: 238 M--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 + + + ++ + I+ K I AC Y + + +V++ G+ D Sbjct: 141 TDLVLLDIKEINEEQHRIVTSQTNKN-----ILACAKYLS-DIGKPVWIRHVLVPGLTDR 194 Query: 296 PRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327 D + L K +K + K ++P++ ++ Sbjct: 195 DDDLIELGKFVKTLKNVDKFEILPYHTMGEFKWR 228 >gi|193214740|ref|YP_001995939.1| nitrogenase cofactor biosynthesis protein NifB [Chloroherpeton thalassium ATCC 35110] gi|193088217|gb|ACF13492.1| nitrogenase cofactor biosynthesis protein NifB [Chloroherpeton thalassium ATCC 35110] Length = 423 Score = 43.0 bits (100), Expect = 0.093, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 63/161 (39%), Gaps = 23/161 (14%) Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVML 239 + + G G+P N D K+L + + + + ++T+G +P I + E + Sbjct: 78 VGIAGPGDPFANPDETMKTLRLVREKY----PEMLLCVATNGLNVLPYIDELAELQVSHV 133 Query: 240 AISLHAVSNDLRNILVPINRKYP------------LEMLIDACRHYPGLSNARRITFEYV 287 I+++AVS + + R LE + A + ++ + Sbjct: 134 TITINAVSPKVGAEVYAWVRHQKRVLRDEQAAETLLENQLAALKKLKEKGITAKVNT--I 191 Query: 288 MLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEYL 327 ++ GIND L + K + + A I N +P+ G + Sbjct: 192 IIPGINDH--HVLEVAKTVSELGADILNTLPYYQNEGTVFE 230 >gi|160915923|ref|ZP_02078131.1| hypothetical protein EUBDOL_01946 [Eubacterium dolichum DSM 3991] gi|158432399|gb|EDP10688.1| hypothetical protein EUBDOL_01946 [Eubacterium dolichum DSM 3991] Length = 249 Score = 43.0 bits (100), Expect = 0.093, Method: Composition-based stats. Identities = 39/243 (16%), Positives = 82/243 (33%), Gaps = 56/243 (23%) Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC + C +C+ T + N+T++E+L + L RS G Sbjct: 29 GCQMRCKYCHNVDTWQMQEA-NMTSDELLKKALRYRSYWKQGGG---------------- 71 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEE 234 I + G GEPL D V + A L TSG P ++ + Sbjct: 72 --ITVSG-GEPLLQIDFVLELFEKAKAK------GVHTVLDTSGNPFTIEQPFFDKLQKL 122 Query: 235 IGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 + V + + + + L + ++ R+ + + + +V++ GI Sbjct: 123 LAVTDLILLDIKHIDALAHKELTGQDNAN----ILAFARYLSEI--QKPVWIRHVLVPGI 176 Query: 293 NDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFS 338 ND L +K + ++ ++P++ ++ ++ + Sbjct: 177 NDDEAQLKRLSVFIKELSNVERVEVLPYHSLGEFKWEKLGIPYTLKGIQAPSKESVEKAK 236 Query: 339 ECI 341 E + Sbjct: 237 EIL 239 >gi|332799081|ref|YP_004460580.1| Radical SAM domain-containing protein [Tepidanaerobacter sp. Re1] gi|332696816|gb|AEE91273.1| Radical SAM domain protein [Tepidanaerobacter sp. Re1] Length = 454 Score = 42.6 bits (99), Expect = 0.094, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 70/197 (35%), Gaps = 22/197 (11%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC++ C+L C +C+ R L+ G + ++ +V S Sbjct: 98 ALCLNVAHDCNLRCKYCFASKGDYHG-------------KRELMSIEVGKKAVDFLVEKS 144 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIARV 231 K I G GEPL + +K+ +S A L K T++T+ + + + Sbjct: 145 GDMKNLEIDFFG-GEPLMAMNTIKEVISYAKSIEKLCHKKFHFTITTNALLLNDEVMQYL 203 Query: 232 GEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR--ITFEYVM 288 E + ++L++ ND + + Y + ++ + L + Sbjct: 204 HEHMDNIVLSLDGRKEVNDFIRVRADGSGTY--DEIVSNIKKIVELRKRDKKEYYVRGTF 261 Query: 289 LKGINDSPRDALNLIKI 305 K + +D ++ + Sbjct: 262 TKYNLNFAQDVFHMADL 278 >gi|20094020|ref|NP_613867.1| Fe-S oxidoreductase [Methanopyrus kandleri AV19] gi|19886991|gb|AAM01797.1| Predicted Fe-S oxidoreductase [Methanopyrus kandleri AV19] Length = 282 Score = 42.6 bits (99), Expect = 0.094, Method: Composition-based stats. Identities = 34/261 (13%), Positives = 96/261 (36%), Gaps = 38/261 (14%) Query: 111 KSRGTLCVSSQVG--CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168 + + V VG C++ C FC +G + E + R++ Sbjct: 15 EHGKFVKVHLPVGGRCNIHCRFCESGLE--------HEGVRVDYPGRAVRTITGDEARTA 66 Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF-VPN 227 + ++ + + G G+PL N+++VK++ + ++++ + + LST+G +P+ Sbjct: 67 LKRVKEHCGRVDVVGIAGPGDPLANWEDVKETFDVVAETV----PEAKRCLSTNGVWLPD 122 Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILV-------------PINRKYPLEMLIDACRHYP 274 + E+ + I+++A+ ++ + ++ + + Sbjct: 123 LIDEVTELVHSVTITVNALDPEIAADIYDRALTPEGEVLTGKEAARW-IVERQEGAMDAL 181 Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGC---EYLCSD 330 +V++ G+N + + + +N+IP PG ++ Sbjct: 182 KKERYILKKVNFVLVPGVN--EDEVERVAERAADAGFHAMNVIPL--IPGGDMKDHRPPT 237 Query: 331 QKDIVTFSECIKRSGYSSPIR 351 +++ + ++ + R Sbjct: 238 CRELSRARDRAEKY-ITVMRR 257 >gi|219854965|ref|YP_002472087.1| hypothetical protein CKR_1622 [Clostridium kluyveri NBRC 12016] gi|219568689|dbj|BAH06673.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 451 Score = 42.6 bits (99), Expect = 0.094, Method: Composition-based stats. Identities = 46/220 (20%), Positives = 86/220 (39%), Gaps = 35/220 (15%) Query: 124 CSLTCSFCYTGTQ--KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 C+++C++C R EIL P + V+ S + ++ Sbjct: 53 CNISCNYCSRKYDCANESRPGVTSEILS------------PEEALEKFKVVKSNMKSLTV 100 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI-TLSTSGFVPNIA--RVGEEIGVM 238 + + G G+ L NF V+KSL++ + S I LST+G + + + + Sbjct: 101 VGIAGPGDALANFQEVRKSLTLIREE-----SPETIFCLSTNGLMLPLYANELIKLGVSH 155 Query: 239 LAISLHAVSNDLRNILVP----INRKYPLEMLIDACRHYPGL------SNARRITFEYVM 288 + ++++AV + + + KY E + S+ VM Sbjct: 156 VTVTINAVDKKIGAKIYKEVNYLGHKYVGEEGAEILLDNQLKGLSYLCSSGVVCKVNIVM 215 Query: 289 LKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEYL 327 LKGIND + ++K +K A + N++ P PG + Sbjct: 216 LKGIND--KHIKEVVKRVKECGAYMTNIMQMIPVPGSRFE 253 >gi|325696320|gb|EGD38211.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis SK160] Length = 269 Score = 42.6 bits (99), Expect = 0.095, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 68/214 (31%), Gaps = 35/214 (16%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C +C+ N E+ E + I Sbjct: 41 GCHMRCQYCH--------NPDTWEM-----ETNKSQLRTVDDVLQEALRYKGFWGNKGGI 87 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF-----VPNIARVGEEIGV 237 + G GE L D + + + L TL T + + + + V Sbjct: 88 TVSG-GEALLQIDFLIAF---FTKAKELGI---HCTLDTCALPFRNTPRYLKKFDKLMAV 140 Query: 238 M--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 + + + ++ + I+ K I AC Y + + +V++ G+ D Sbjct: 141 TDLVLLDIKEINEEQHKIVTSQTNKN-----ILACAKYLSY-IGKPVWIRHVLVPGLTDR 194 Query: 296 PRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327 D + L K +K + K ++P++ ++ Sbjct: 195 DDDLIELGKFVKTLKNVDKFEILPYHTMGEFKWR 228 >gi|296158481|ref|ZP_06841312.1| Radical SAM domain protein [Burkholderia sp. Ch1-1] gi|295891425|gb|EFG71212.1| Radical SAM domain protein [Burkholderia sp. Ch1-1] Length = 370 Score = 42.6 bits (99), Expect = 0.095, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 54/129 (41%), Gaps = 8/129 (6%) Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 L + L V+ +LR ++P PL ++A + + +++ YV+ G+ DS Sbjct: 234 TLGMHLEVVTPELRERIMPGKASVPLSRYMEAFKSAVAVFGRGQVS-TYVL-AGLGDSAE 291 Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFSECIKRSGYSSPIRTPR 354 L + + L + ++PF P G + + + + + ++ +R+ Sbjct: 292 AILAMSRELIDLGVYPFVVPFVPISGTPLEDHPAPTPEFMKSVLQPLGGMLNAAAMRSS- 350 Query: 355 GLDILAACG 363 DI A CG Sbjct: 351 --DIKAGCG 357 >gi|224367738|ref|YP_002601901.1| hypothetical protein HRM2_06230 [Desulfobacterium autotrophicum HRM2] gi|223690454|gb|ACN13737.1| conserved hypothetical protein [Desulfobacterium autotrophicum HRM2] Length = 471 Score = 42.6 bits (99), Expect = 0.098, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 78/233 (33%), Gaps = 59/233 (25%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+ +C +C + + PG ++E + +S Sbjct: 87 CNASCFYCPSAQK---------------------HRSIPGTGNLEFNAPEAYADYVSAFD 125 Query: 184 MMGM----GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIARVGEEIG 236 + G+ GEP +FD V + L G S I + T+G + + + +E Sbjct: 126 IKGVSFSGGEPTLSFDRVVRFLKTLRHRSGNSL---YIWMYTNGILITEDKLKILRDEG- 181 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 +++R + +Y LE + A P R+T E + + P Sbjct: 182 ----------LDEIRFDI--GAVRYNLEKVRMAVGIIP------RVTVE---IPAV---P 217 Query: 297 RDALNLIKILKGIPAK-INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSS 348 D L ++++ + A +N + + + +K I + G + Sbjct: 218 EDVETLKRVVRDLDAMGVNFLNLHQLRCTGFNR--EKFIQRNYTFVHGPGVAV 268 >gi|182417460|ref|ZP_02948787.1| NifN-B [Clostridium butyricum 5521] gi|237665591|ref|ZP_04525579.1| nitrogenase cofactor biosynthesis protein NifB [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378629|gb|EDT76156.1| NifN-B [Clostridium butyricum 5521] gi|237658538|gb|EEP56090.1| nitrogenase cofactor biosynthesis protein NifB [Clostridium butyricum E4 str. BoNT E BL5262] Length = 888 Score = 42.6 bits (99), Expect = 0.098, Method: Composition-based stats. Identities = 42/215 (19%), Positives = 81/215 (37%), Gaps = 40/215 (18%) Query: 124 CSLTCSFCYTGTQ--KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 C+++C++C+ R E+L P + + S + Sbjct: 509 CNVSCNYCHRKYDCVNESRPGVTTEVLS------------PEQAFEKYKYVKSKMPNLKV 556 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIA--RVGEEIGVML 239 I + G G+ L NFDNVK++L + + + LST+G + + + + Sbjct: 557 IGIAGPGDALANFDNVKETLKLIRNDD----PEITFCLSTNGLMLPFYAQELIDLGVSHV 612 Query: 240 AISLHAVSNDLRNILVPI------------NRKYPLEMLIDACRHYPGLSNARRITFEYV 287 I+++AV+ ++ + + L + ++ ++ V Sbjct: 613 TITINAVNPEISAKVYKYVDYLGVIYRGEEAAQILLNNQLSGLKYLTDRGIVVKVNI--V 670 Query: 288 MLKGINDSPRDALNLIKILKGIPAKI-N---LIPF 318 MLKGIND ++ K +K A I N +IP Sbjct: 671 MLKGIND--EHIYDITKKVKDFGATITNIMQMIPV 703 >gi|325265158|ref|ZP_08131884.1| putative pyruvate formate-lyase activating enzyme [Clostridium sp. D5] gi|324029562|gb|EGB90851.1| putative pyruvate formate-lyase activating enzyme [Clostridium sp. D5] Length = 302 Score = 42.6 bits (99), Expect = 0.099, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 33/85 (38%), Gaps = 15/85 (17%) Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK---INLIPFN------------PW 321 + RI +K +N + +I+ L+ +NL+P++ + Sbjct: 211 RDGARIYIRIPTIKEVNGNEDAMKAMIRYLQEKNIHAAGVNLLPYHNTGSGKYTKIGKCY 270 Query: 322 PGCEYLCSDQKDIVTFSECIKRSGY 346 G D++++ F E + +G+ Sbjct: 271 EGTGLHAPDKEEMNHFVEMFREAGF 295 >gi|92114198|ref|YP_574126.1| GTP cyclohydrolase subunit MoaA [Chromohalobacter salexigens DSM 3043] gi|91797288|gb|ABE59427.1| GTP cyclohydrolase subunit MoaA [Chromohalobacter salexigens DSM 3043] Length = 329 Score = 42.6 bits (99), Expect = 0.099, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 71/195 (36%), Gaps = 31/195 (15%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C C +C + + QVL E+IE + V + I Sbjct: 23 CDFRCVYCMSEDMTFLPR-------AQVLTL----------EEIEQVARAFVELGVEKIR 65 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGL--SFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 + G GEPL V++ + +G +T + +G V + + E L I Sbjct: 66 LTG-GEPL-----VRRGIDDLVGRIGALPGLKDFAMTTNGAGLVKHAKALREGGLQRLNI 119 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 S+ ++ + L R LE ++ R + RI VMLKG ND + L+ Sbjct: 120 SIDSLDPERFRQL---TRTGNLEHVVAGIRA-ARDAGFERIKLNAVMLKGRND--DEVLD 173 Query: 302 LIKILKGIPAKINLI 316 L+ + I+ I Sbjct: 174 LVDFARREGVDISFI 188 >gi|325264173|ref|ZP_08130905.1| putative pyruvate formate-lyase activating enzyme [Clostridium sp. D5] gi|324030657|gb|EGB91940.1| putative pyruvate formate-lyase activating enzyme [Clostridium sp. D5] Length = 317 Score = 42.6 bits (99), Expect = 0.10, Method: Composition-based stats. Identities = 23/156 (14%), Positives = 54/156 (34%), Gaps = 22/156 (14%) Query: 210 LSFSKRRITLSTSGFVP--NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267 L + T G+ P +V + ++L H R NR +++ Sbjct: 166 LKHGGIHTAIETCGYSPWNEFEKVLDYTDLVLYDVKHCDDTMHRRFTGKGNR-----LIL 220 Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEY 326 + + + R + ++ G ND+ ++ + I I AK I+L+PF+ ++ Sbjct: 221 ENLKKVSDFN--RPVIIRIPVIPGFNDTRKNMQEVAHIAAEIGAKEIHLLPFHQIGESKW 278 Query: 327 ------------LCSDQKDIVTFSECIKRSGYSSPI 350 ++ + + + +G + Sbjct: 279 DSTGKTYHFRNIEEPSKESMAEIKQMLAETGVPVVV 314 >gi|322807365|emb|CBZ04939.1| transcriptional regulatory protein [Clostridium botulinum H04402 065] Length = 455 Score = 42.6 bits (99), Expect = 0.10, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 76/200 (38%), Gaps = 33/200 (16%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC++ C+L C +C+ + R L+ G + I+ ++ S Sbjct: 96 ALCLNIAHDCNLRCKYCFADEGEYKG-------------KRELMSPGVGKKAIDFVIEKS 142 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV--- 231 RK + + G GEPL F +KK + A + R T++T+G + N + Sbjct: 143 GPRKNIEVDLFG-GEPLMAFSTIKKIVEYAKEQEKKHNKTIRFTMTTNGTLLNQEIMEYL 201 Query: 232 -GEEIGVMLAISLHAV-SNDLR---------NILVPINRKYPLEMLIDACRHYPGLSNAR 280 ++L+I ++++R + ++P +K + + D + Y Sbjct: 202 DKNMGNIVLSIDGRKEINDNVRVRVDGSGSYDSILPKIKK--MVEMRDKTKQYYARGTFT 259 Query: 281 RIT---FEYVMLKGINDSPR 297 R FE VM ND Sbjct: 260 RENLDFFEDVMHMANNDFDE 279 >gi|257094383|ref|YP_003168024.1| molybdenum cofactor biosynthesis protein A [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046907|gb|ACV36095.1| molybdenum cofactor biosynthesis protein A [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 359 Score = 42.6 bits (99), Expect = 0.10, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 62/187 (33%), Gaps = 36/187 (19%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C CS+C + QVL L D+ + G Sbjct: 53 CDFRCSYCMAEEMTFLPR-------AQVLTLEECLRIAGTFVDLGVTKVRVTG------- 98 Query: 184 MMGMGEPL--CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 GEPL N ++ + GLS + + ++T+G + R + Sbjct: 99 ----GEPLVRHN------AIWLLERIAGLS-GLKELVITTNG--SQLDRFAAALRAAGVR 145 Query: 242 SLHAVSNDLRNILVP-INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ++ + LR+ I R L ++ + R+ VM++G+ND Sbjct: 146 RINVSLDTLRSQRFREITRVGDLAKVLRGLDA-AQAAGFERLKLNTVMMRGVND-----D 199 Query: 301 NLIKILK 307 LI +++ Sbjct: 200 ELIDLVQ 206 >gi|262165976|ref|ZP_06033713.1| pyruvate formate-lyase activating enzyme [Vibrio mimicus VM223] gi|262025692|gb|EEY44360.1| pyruvate formate-lyase activating enzyme [Vibrio mimicus VM223] Length = 165 Score = 42.6 bits (99), Expect = 0.10, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 59/151 (39%), Gaps = 25/151 (16%) Query: 216 RITLSTSGFV----PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 L T+G++ P I V E ++ + + +++++ L+ ++ K +D R Sbjct: 20 HTCLDTNGYIRKFTPVIDEVLEVTD-LVMLDIKQMNDEIHQDLIGVSNK----RTLDFAR 74 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL-- 327 + + ++ YV++ G D A L + +K + KI L+P++ ++ Sbjct: 75 YLHQI--GQKTWLRYVVVPGYTDDEASAHQLGEFIKDMENIEKIELLPYHKLGAHKWEAM 132 Query: 328 ----------CSDQKDIVTFSECIKRSGYSS 348 ++ + +++ + Sbjct: 133 GEEYPLEGVNPPSKETMDKIVAILEQYHSNV 163 >gi|14547234|emb|CAC42520.1| NifB protein [Pseudomonas stutzeri] Length = 504 Score = 42.6 bits (99), Expect = 0.10, Method: Composition-based stats. Identities = 30/210 (14%), Positives = 72/210 (34%), Gaps = 33/210 (15%) Query: 124 CSLTCSFCYTGTQ--KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 C++ C +C R E+L P + + + +++ Sbjct: 67 CNIQCHYCNRKYDCANESRPGVVSELLE------------PVQAVKKVKAVAATIPQMTV 114 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVML 239 + + G G+PL N ++ + S+ ++ +ST+G + + + + Sbjct: 115 LGIAGPGDPLANPQRTFETFRMLSEQA----PDIKLCVSTNGLALPDCVDELAKHNIDHV 170 Query: 240 AISLHAVSNDLRNILVPI----NRKYPLEMLIDACRHYPGL------SNARRITFEYVML 289 I+++ V D+ + P + +P + V++ Sbjct: 171 TITINCVDPDIGAEIYPWIYLEQQAHPWAQGAKILIERQQKGLEMLVERGILVKVNSVLI 230 Query: 290 KGINDSPRDALNLIKILKGIPAKI-NLIPF 318 G+ND + +I+K A + N++P Sbjct: 231 PGVND--EHLKEVSRIVKAKGAFLHNVMPL 258 >gi|307718060|ref|YP_003873592.1| FeMo cofactor biosynthesis protein NifB [Spirochaeta thermophila DSM 6192] gi|306531785|gb|ADN01319.1| FeMo cofactor biosynthesis protein NifB [Spirochaeta thermophila DSM 6192] Length = 423 Score = 42.6 bits (99), Expect = 0.10, Method: Composition-based stats. Identities = 27/200 (13%), Positives = 65/200 (32%), Gaps = 30/200 (15%) Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221 P ++ ++ + + G G+P N D +L + ++T Sbjct: 66 PDEACEVVDLLKERFPDLTVVGIAGPGDPFANPDETLSTLRGVRSRH----PDLLLCVAT 121 Query: 222 SG--FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPI------------NRKYPLEMLI 267 +G + + + + ++++AV ++ + P + ++ Sbjct: 122 NGLALPEYVEELADLRVSHVTVTVNAVHPEVGERIYPWVRYERRVRGGREAARLLIDRQQ 181 Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEY 326 +A + + +++ G+ND+ + K A IN IP P G + Sbjct: 182 EAIVSL--KAKGLVVKVNTIVIPGVNDT--HVREVAKETAAWGADIINPIPLYPVEGTRF 237 Query: 327 L---CSDQKDIVTFSECIKR 343 D F ++R Sbjct: 238 AHIGEPDP----RFMSELRR 253 >gi|315452871|ref|YP_004073141.1| putative radical SAM domain-containing protein [Helicobacter felis ATCC 49179] gi|315131923|emb|CBY82551.1| Putative radical SAM domain protein [Helicobacter felis ATCC 49179] Length = 304 Score = 42.6 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 66/188 (35%), Gaps = 19/188 (10%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+ C +C K + + QV+ +L + + + + + Sbjct: 29 CNFNCIYCELKAHK------PIDKMEQVIPLSTL------LDAVHSALQTHKNTPLDVLT 76 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA-IS 242 GEP + ++ ++ GL + + LS N+ + + S Sbjct: 77 TTANGEPTL-YPHLYDFITQLKTPPGL----KTLILSNGSRFANLQVQEALMHYDIVKFS 131 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 L A + +++ LE L++ + I E +++KG+NDS + + Sbjct: 132 LDAALPKAFAKVDKPSKQIHLEQLLEGIADFSARYAGMLIA-EVLLVKGVNDSLENIQAI 190 Query: 303 IKILKGIP 310 + L+ + Sbjct: 191 VDFLRPLK 198 >gi|289423463|ref|ZP_06425265.1| pyruvate formate-lyase 1-activating enzyme [Peptostreptococcus anaerobius 653-L] gi|289156097|gb|EFD04760.1| pyruvate formate-lyase 1-activating enzyme [Peptostreptococcus anaerobius 653-L] Length = 243 Score = 42.6 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 65/188 (34%), Gaps = 36/188 (19%) Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC L C FC+ T + +T +E++ + + ++ G + G Sbjct: 28 GCPLRCRFCHNRDTWETGIGTEMTPDEVIDEYMKYKTYYETSGGGITVSG---------- 77 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM- 238 GE D V + +A + L TSGFV I ++ E + Sbjct: 78 --------GEASLQADFVTEVFRLAKKN------GVHTCLDTSGFV-EIDKIKELLDYTD 122 Query: 239 -LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 + + L + + R+ + E + R+ + + +V++ GI DS Sbjct: 123 LVLLDLKHMDPE-RSKWLTGASS---EKAMQLARYLDERN--IPVWLRHVLIPGITDSRE 176 Query: 298 DALNLIKI 305 + + Sbjct: 177 NLELMADF 184 >gi|157165730|ref|YP_001467188.1| radical SAM domain-containing protein [Campylobacter concisus 13826] gi|112801435|gb|EAT98779.1| nitrogenase cofactor biosynthesis protein NifB [Campylobacter concisus 13826] Length = 275 Score = 42.6 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 69/219 (31%), Gaps = 47/219 (21%) Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF-----VPNI 228 + IS I + G G+P+C+ D + F + LST+G V I Sbjct: 74 KFRQDISVIGIAGPGDPMCDADKTLATFEKCKS----HFPNALLCLSTNGLALPEHVDEI 129 Query: 229 ARVGEEIGVMLAISLHAVS--NDLRNILVPINRKYPLEMLIDACRHYPGL------SNAR 280 R+G V + ++ + + + + + Y E Sbjct: 130 VRLG-VSHVTVTVNAVTPDVGSKVYSWVRYEGKNYYGEEAARILLARQDKGIRKLKEAGM 188 Query: 281 RITFEYVMLKGINDSPRDALNLIKILKGIPAKI-N---LIPFNPWPGCEYLCSDQKDIVT 336 + V++ G+N ++ K A I N +IP + P ++I Sbjct: 189 LVKINTVVIPGVN--IDHVQSISAKAKQWGADIMNCMAMIPVHDTPFENLKSPSTEEIHR 246 Query: 337 FSECIKRSGYSSPIRTPRGLDIL---------A-ACGQL 365 IR G DI A ACG+L Sbjct: 247 -------------IRRSIGDDIDQMTHCSRCRADACGKL 272 >gi|206603028|gb|EDZ39508.1| Probable radical SAM family protein [Leptospirillum sp. Group II '5-way CG'] Length = 311 Score = 42.6 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 10/112 (8%) Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQ--VGCSLTCSFCYTGT--------QKL 138 L R R G + V ++ V+ GC+ C +C + L Sbjct: 7 LWRSHERSFQGNRYVYPVLSRRAGGISVGVNLNPDKGCNFDCVYCQVDRTPAGMEGVEPL 66 Query: 139 VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP 190 R + +L ++ + + E +P R++S+I G GEP Sbjct: 67 HRTVETGRLLDELQTLQKSIRAGDFFEKPPFEAVPVPLRRMSDIAFSGDGEP 118 >gi|218961773|ref|YP_001741548.1| putative enzyme with radical SAM domain protein (Fe-S oxidoreductases) [Candidatus Cloacamonas acidaminovorans] gi|167730430|emb|CAO81342.1| putative enzyme with radical SAM domain protein (Fe-S oxidoreductases) [Candidatus Cloacamonas acidaminovorans] Length = 339 Score = 42.6 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 60/190 (31%), Gaps = 23/190 (12%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C L C +C T QV + E S + I Sbjct: 53 CPLNCVYCEVQR-------TTH----QV--TKREAFFETREILAELDSFMSTNPHLDYIT 99 Query: 184 MMGMGEPLCN--FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 G GEP N + + S L+ I S P + + E + + + Sbjct: 100 FSGAGEPTLNSLLGQIVNYIKAKYPSYKLALLTNGILFS----DPEVRK--EVLPCDIVL 153 Query: 242 -SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 SL + + + + + +E LI+ H+ I E ++ GIN P++ Sbjct: 154 PSLDSATQEGFEKINRPCPELKVEELIEGLIHFRQEYKGI-IWLEVFLVSGINTIPQEIS 212 Query: 301 NLIKILKGIP 310 L K + I Sbjct: 213 ALAKAINKIK 222 >gi|225028525|ref|ZP_03717717.1| hypothetical protein EUBHAL_02804 [Eubacterium hallii DSM 3353] gi|224954168|gb|EEG35377.1| hypothetical protein EUBHAL_02804 [Eubacterium hallii DSM 3353] Length = 450 Score = 42.6 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 43/239 (17%), Positives = 91/239 (38%), Gaps = 33/239 (13%) Query: 42 IYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPV 101 + + D ++ +++ +L ++F+ PE +S I Sbjct: 89 LAKKNEADILVGNNKKKDIAQILEEYFAAKEPEQEVPVVS-----------EVIDINHTK 137 Query: 102 EIETVYIPEKSRGTLC-VSSQVGCSLTCSFCYTG-TQKLVRNLTAEEILLQVLLARSLLG 159 E E + I + + T + Q GC+ CS+C T+ +R+ EE++ +V ++L Sbjct: 138 EYEDLTIHKVNEHTRAYIKIQDGCNQFCSYCIIPYTRGRIRSKNPEEVIEEV---KNLAA 194 Query: 160 DFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITL 219 + G+ + S G+ + + ++ V K + D + + Sbjct: 195 QGYKEIVLTGIHLSSYGKDLGTVTLLD----------VIKRIQQVEDVERIRLGSLEPRI 244 Query: 220 STSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA---CRHYPG 275 T FV + + +++ +SL + ++ L +NRKY E +A R Y Sbjct: 245 ITEEFVKELVKC-DKVCPHFHLSLQSGCDET---LKRMNRKYTTEEYEEALNILRKYYE 299 >gi|153838020|ref|ZP_01990687.1| lysine 2;3-aminomutase [Vibrio parahaemolyticus AQ3810] gi|149748628|gb|EDM59487.1| lysine 2;3-aminomutase [Vibrio parahaemolyticus AQ3810] Length = 340 Score = 42.6 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 65/221 (29%), Gaps = 46/221 (20%) Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153 I + K+R + V GC++ C +C R+ +E Sbjct: 92 DPLDEQDNAIPGLLHKYKNRVLMIVKG--GCAVNCRYC------FRRHFPYQE------- 136 Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213 + G + + + N V+ G+PL D + + Sbjct: 137 ------NKSGKQAWSQCIEYMAEKPELNEVIFSGGDPLMAKD---DEIHWLLE------- 180 Query: 214 KRRITLSTSGFVPNIARVGEE------IGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267 +P+I R+ I + L + R ++ + + Sbjct: 181 -------HIAKIPHIKRLRIHSRLPVVIPARITDELCQLLKASRLQIILVTHINHANEIN 233 Query: 268 DACRHYPGLSNARRITF--EYVMLKGINDSPRDALNLIKIL 306 D R +T + V+LKG+NDS L + L Sbjct: 234 DELRQAMKKLKEANVTLLNQGVLLKGVNDSVDALSQLSEAL 274 >gi|28899620|ref|NP_799225.1| hypothetical protein VP2846 [Vibrio parahaemolyticus RIMD 2210633] gi|260364033|ref|ZP_05776761.1| lysine 2;3-aminomutase [Vibrio parahaemolyticus K5030] gi|260876639|ref|ZP_05888994.1| lysine 2;3-aminomutase [Vibrio parahaemolyticus AN-5034] gi|260898079|ref|ZP_05906575.1| lysine 2;3-aminomutase [Vibrio parahaemolyticus Peru-466] gi|260902332|ref|ZP_05910727.1| lysine 2;3-aminomutase [Vibrio parahaemolyticus AQ4037] gi|28807872|dbj|BAC61109.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|308085822|gb|EFO35517.1| lysine 2;3-aminomutase [Vibrio parahaemolyticus Peru-466] gi|308093973|gb|EFO43668.1| lysine 2;3-aminomutase [Vibrio parahaemolyticus AN-5034] gi|308110956|gb|EFO48496.1| lysine 2;3-aminomutase [Vibrio parahaemolyticus AQ4037] gi|308114570|gb|EFO52110.1| lysine 2;3-aminomutase [Vibrio parahaemolyticus K5030] Length = 340 Score = 42.6 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 65/221 (29%), Gaps = 46/221 (20%) Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153 I + K+R + V GC++ C +C R+ +E Sbjct: 92 DPLDEQDNAIPGLLHKYKNRVLMIVKG--GCAVNCRYC------FRRHFPYQE------- 136 Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213 + G + + + N V+ G+PL D + + Sbjct: 137 ------NKSGKQAWSQCIEYMAEKPELNEVIFSGGDPLMAKD---DEIHWLLE------- 180 Query: 214 KRRITLSTSGFVPNIARVGEE------IGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267 +P+I R+ I + L + R ++ + + Sbjct: 181 -------HIAKIPHIKRLRIHSRLPVVIPARITDELCQLLKASRLQIILVTHINHANEIN 233 Query: 268 DACRHYPGLSNARRITF--EYVMLKGINDSPRDALNLIKIL 306 D R +T + V+LKG+NDS L + L Sbjct: 234 DELRQAMKKLKEANVTLLNQGVLLKGVNDSVDALSQLSEAL 274 >gi|134291461|ref|YP_001115230.1| radical SAM domain-containing protein [Burkholderia vietnamiensis G4] gi|134134650|gb|ABO58975.1| Radical SAM domain protein [Burkholderia vietnamiensis G4] Length = 356 Score = 42.6 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 52/143 (36%), Gaps = 16/143 (11%) Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 R+ L + L AV+ +R ++P PL + A R + +++ Y+ Sbjct: 210 FDRMKASGIDTLGMHLEAVTPAVRERIMPGKASVPLSRYMSAFRAAVAVFGRGQVS-TYI 268 Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVT----FSEC 340 + G+ DS L++ + L + ++PF P G + Sbjct: 269 L-AGLGDSEAAILDMSRELIDLGVYPFVVPFVPISGTPLESHPAPSPDFMRAVLAPLGAM 327 Query: 341 IKRSGYSSPIRTPRGLDILAACG 363 ++ +G R DI A CG Sbjct: 328 LRDAGM-------RSADIKAGCG 343 >gi|148827317|ref|YP_001292070.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus influenzae PittGG] gi|260582394|ref|ZP_05850186.1| pyruvate formate-lyase 1-activating enzyme [Haemophilus influenzae NT127] gi|148718559|gb|ABQ99686.1| pyruvate formate-lyase activating enzyme [Haemophilus influenzae PittGG] gi|260094545|gb|EEW78441.1| pyruvate formate-lyase 1-activating enzyme [Haemophilus influenzae NT127] Length = 246 Score = 42.6 bits (99), Expect = 0.12, Method: Composition-based stats. Identities = 35/248 (14%), Positives = 84/248 (33%), Gaps = 54/248 (21%) Query: 123 GCSLTCSFCYTGT-----QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C+ ++ E+++ +V+ R + G G Sbjct: 29 GCLMRCKYCHNRDTWDLEGGKE--ISVEDLMKEVVTYRHFMNATGGGVTASGGEAVLQAE 86 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 + + ++ G++ L T+GFV + + +E+ Sbjct: 87 FVRD---------------WFRACK----EEGIN-----TCLDTNGFVRHYDHIIDELLD 122 Query: 238 MLAISLHAV---SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 + + L + ++ + L+ + K LE Y N YV++ G D Sbjct: 123 VTDLVLLDLKELNDQVHQNLIGVPNKRTLE-----FAKYLQKRNQH-TWIRYVVVPGYTD 176 Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSEC 340 S D L + ++G+ K+ L+P++ ++ ++ + Sbjct: 177 SDHDVHLLGQFIEGMTNIEKVELLPYHRLGAHKWKTLGLDYELEDVLPPTKESLEHIKTI 236 Query: 341 IKRSGYSS 348 ++ G++ Sbjct: 237 LEGYGHTV 244 >gi|325688591|gb|EGD30608.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis SK72] Length = 267 Score = 42.6 bits (99), Expect = 0.12, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 72/234 (30%), Gaps = 69/234 (29%) Query: 123 GCSLTCSFCY-------------------TGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163 GC L C +C + T R + EEI+ +VL R + G Sbjct: 39 GCPLRCPWCSNPESQQFRPEPMLDATTKKSITMGEER--SVEEIINEVLKDRDFYEESGG 96 Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223 + G I + K++ A+ G+ + T+ Sbjct: 97 GLTLSGGEIFAQFE-------------------FAKAILKAAKEKGI-----HTAIETTA 132 Query: 224 FVPNIARVGEEIGV--MLAISL-------HAVSNDLRNILVPINRKYPLEMLIDACRHYP 274 FV + + + I + L H ++N L+ N Y Sbjct: 133 FVEH-EKFVDLIQYVDFIYTDLKHYNSVNHRKVTGVKNELIVQNIHY------------- 178 Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEYL 327 ++ + I ++ NDS DA + + + L+PF+ + +Y Sbjct: 179 AFTHQKTIVLRIPVIPDFNDSLEDAEQFATLFNELSINQVQLLPFHQFGENKYK 232 >gi|270261183|ref|ZP_06189456.1| hypothetical protein SOD_a04080 [Serratia odorifera 4Rx13] gi|270044667|gb|EFA17758.1| hypothetical protein SOD_a04080 [Serratia odorifera 4Rx13] Length = 246 Score = 42.6 bits (99), Expect = 0.12, Method: Composition-based stats. Identities = 37/245 (15%), Positives = 76/245 (31%), Gaps = 48/245 (19%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T EE++ + R + G G Sbjct: 29 GCLMRCLYCHNRDTWDTHGGKE--VTVEELMKDTVAYRHFMNASGGGVTASGGEAILQAE 86 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 + + E ++ D+ G + P I + + Sbjct: 87 FVRDWFRACQQEG----------INTCLDTNGF----------VRRYDPVIDELLDATD- 125 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 ++ + L +++D+ LV ++ L+ Y N R YV++ G +D + Sbjct: 126 LVMLDLKQMNDDIHQNLVGVSNHRTLD-----FARYLAKRNQ-RTWIRYVVVPGWSDDDK 179 Query: 298 DALNLIKILKGIPA--KINLIPFNP-------WPGCEYL-----CSDQKDIVTFSECIKR 343 L + K + KI L+P++ G EY + ++ Sbjct: 180 STHMLGEFTKDMTNIEKIELLPYHELGKHKWVAMGEEYKLDGVHPPKADTMDRVKGILES 239 Query: 344 SGYSS 348 G+ Sbjct: 240 YGHKV 244 >gi|303234148|ref|ZP_07320794.1| radical SAM domain protein [Finegoldia magna BVS033A4] gi|302494689|gb|EFL54449.1| radical SAM domain protein [Finegoldia magna BVS033A4] Length = 423 Score = 42.6 bits (99), Expect = 0.12, Method: Composition-based stats. Identities = 36/202 (17%), Positives = 68/202 (33%), Gaps = 23/202 (11%) Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168 + + V + C+L CS+C +N+ E L+ + + + Sbjct: 57 KQNKENSFVVVTNTNCNLRCSYC------YEKNICDTERLM-------IEEENNSIYEFI 103 Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228 I +I NI G GEPL N + + ++ + ++ K + + Sbjct: 104 YRNIKKSDARIFNIEFTG-GEPLLNKKYIFRLVNKINRNLKEKIIKYSLVTNGILLEKED 162 Query: 229 ARVGEEIGVMLAISLHAV---SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFE 285 + + + I+L N R L N +++I + Y S +IT Sbjct: 163 IKFFNDNKFNIQITLDGSKKFHNQERIGLDITN---SFDIIIKNIKEYLNNSELLKITIR 219 Query: 286 YVMLKGINDSPRDALNLIKILK 307 + N + LI LK Sbjct: 220 ---VNVSNKNKESIFELIDFLK 238 >gi|153953661|ref|YP_001394426.1| NifB1 [Clostridium kluyveri DSM 555] gi|219854283|ref|YP_002471405.1| hypothetical protein CKR_0940 [Clostridium kluyveri NBRC 12016] gi|146346542|gb|EDK33078.1| NifB1 [Clostridium kluyveri DSM 555] gi|219568007|dbj|BAH05991.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 423 Score = 42.6 bits (99), Expect = 0.12, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 81/225 (36%), Gaps = 45/225 (20%) Query: 124 CSLTCSFCYTGTQ--KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 C+++C+FC R E+L P + ++ + ++ Sbjct: 37 CNVSCNFCNRKYDCVNETRPGVTSEVL------------TPEKARDKFNIVKDKVKNLTV 84 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR-RITLSTSGFV-----PNIARVGEEI 235 + + G G+PL NF+ KKS+ + S LST+G + I R+G Sbjct: 85 VGIAGPGDPLANFEETKKSIELIKKE-----SPNITFCLSTNGLMLPFYADEIIRLG-VT 138 Query: 236 GVMLAISLHAVSNDLRNILVPI------------NRKYPLEMLIDACRHYPGLSNARRIT 283 V + ++AV + + L + R+ ++ Sbjct: 139 HVTIT--INAVDPKIGAKIYKFVNYLGSVLEGEEAGNVLLNNQLSGLRYIAQKGIICKVN 196 Query: 284 FEYVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEYL 327 VM+KGIN S ++K +K A + N++P P G + Sbjct: 197 I--VMIKGINSS--HIPEVVKKVKECGAYMTNIMPLIPVKGSVFE 237 >gi|86743153|ref|YP_483553.1| nitrogenase cofactor biosynthesis protein NifB [Frankia sp. CcI3] gi|86570015|gb|ABD13824.1| nitrogenase cofactor biosynthesis protein NifB [Frankia sp. CcI3] Length = 527 Score = 42.6 bits (99), Expect = 0.12, Method: Composition-based stats. Identities = 34/246 (13%), Positives = 86/246 (34%), Gaps = 36/246 (14%) Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 V+ GC++ C++C R + + P + ++ S + Sbjct: 74 VAVAPGCNIQCNYC-------NRKFDCA---NESRPGVTSTLLSPEDALAKVKLVASEIK 123 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEI 235 ++S + + G G+PL N +++ + + ++ LST+G ++ R+ E Sbjct: 124 QMSVLGIAGPGDPLANPKPTFRTMELVARD----CPDIKLCLSTNGLTLPDHVDRIAELN 179 Query: 236 GVMLAISLHAVSNDLRNILVPI----NRKYPLEMLIDACRHYPGL------SNARRITFE 285 + I+++ + ++ + P ++Y Sbjct: 180 VDHVTITINMIDPEVGERIYPWIAFRGKRYTGREASRILSERQLEGLAMLTERKILCKVN 239 Query: 286 YVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPG-------CEYLCSDQKDIVTF 337 VM+ GIND + + + +K + A + N++P P +++ Sbjct: 240 SVMIPGIND--DHLVEVSRKVKELGAFLHNVMPLVSAPEHGTHFGLTGQRGPTPQELKAL 297 Query: 338 SECIKR 343 + ++ Sbjct: 298 QDRCEQ 303 >gi|220929033|ref|YP_002505942.1| radical SAM protein [Clostridium cellulolyticum H10] gi|219999361|gb|ACL75962.1| Radical SAM domain protein [Clostridium cellulolyticum H10] Length = 269 Score = 42.2 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 63/162 (38%), Gaps = 26/162 (16%) Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF-----VPNIARVGEEIG 236 I + G G+PL N D++ +L I S+ ++ + + T+GF I G + Sbjct: 73 IGIAGPGDPLANPDDIFSALEIVSE----NYPDFKKCICTNGFGVEDCADKIKEAGIDY- 127 Query: 237 VMLAISLHAVSNDLRNILVPI-----------NRKYPLEMLIDACRHYPGLSNARRITFE 285 + +++++++ + + + + + L + +I Sbjct: 128 --ITLTINSINVNTLSKIYKYIYYRDEYYEGESAAQLILRLQKSALDILSSIKGLKIKIN 185 Query: 286 YVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEY 326 V + GIND D LI+ L IN+IP G E+ Sbjct: 186 IVFIPGINDKEID--ELIQFLCKFKIDIINIIPLLSVSGTEF 225 >gi|291616899|ref|YP_003519641.1| PflA [Pantoea ananatis LMG 20103] gi|291151929|gb|ADD76513.1| PflA [Pantoea ananatis LMG 20103] Length = 290 Score = 42.2 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 33/245 (13%), Positives = 74/245 (30%), Gaps = 48/245 (19%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T E ++ VL R + G G Sbjct: 73 GCLMRCLYCHNRDTWDTHAGKE--ITVEALMADVLSYRHFMNASGGGVTASGGEAILQAE 130 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 + + E + D+ G + P I + + Sbjct: 131 FVRDWFRACKAEG----------IHTCLDTNGF----------VRRYDPVIDELLDATD- 169 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 ++ + L +++++ ILV ++ L+ Y R +V++ G +D Sbjct: 170 LVMLDLKQMNDEVHQILVGVSNHRTLD-----FARYLQKKGK-RTWIRFVVVPGYSDDDD 223 Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKR 343 L + + KI L+P++ ++ ++ + + R Sbjct: 224 TVHRLGAFTQDMANVEKIELLPYHELGKHKWIAMGEEYKLDGVKPPTKETMERVKNILLR 283 Query: 344 SGYSS 348 G+ Sbjct: 284 YGHEV 288 >gi|86158799|ref|YP_465584.1| radical SAM family protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85775310|gb|ABC82147.1| Radical SAM [Anaeromyxobacter dehalogenans 2CP-C] Length = 446 Score = 42.2 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 37/204 (18%), Positives = 71/204 (34%), Gaps = 33/204 (16%) Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQ---------KLVRNLTAEEILLQVLLARSLLGDFPG 163 R + S C+ C C + ++ R TAEE+ + R L Sbjct: 186 RDEGAIPSSAACNAACVGCLSEQDEGMPPSSHERIARPPTAEEMAD--VAVRHLERATGR 243 Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223 G GEPL + ++K++ + + + +T+G Sbjct: 244 VMISFGQGCE--------------GEPLLRWKEIEKAIRLIRART----RRGTLHANTNG 285 Query: 224 FVP-NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI 282 +P +AR+ + +SL++ S DL Y LE ++ A R + + Sbjct: 286 SLPEALARLIAAGLESVRVSLNSASPDLYAAYYRPT-GYALEDVVRAVR--AAKAGGAYV 342 Query: 283 TFEYVMLKGINDSPRDALNLIKIL 306 + G+ D +A L +++ Sbjct: 343 ALNLLTFPGVTDRAGEAERLCRLV 366 >gi|189346211|ref|YP_001942740.1| nitrogenase cofactor biosynthesis protein NifB [Chlorobium limicola DSM 245] gi|189340358|gb|ACD89761.1| nitrogenase cofactor biosynthesis protein NifB [Chlorobium limicola DSM 245] Length = 424 Score = 42.2 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 63/161 (39%), Gaps = 23/161 (14%) Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVML 239 + + G G+P N D ++L + + + + ++T+G +P I + E + Sbjct: 78 VGIAGPGDPFANPDETMETLRLVREHY----PEMLLCVATNGLDLMPWIDELAELQVSHV 133 Query: 240 AISLHAVSNDLRNILVPI------------NRKYPLEMLIDACRHYPGLSNARRITFEYV 287 I+++A+ ++ + + K + ++A + + + Sbjct: 134 TITINAIDPEVGSEIYAWVRHKKKMYRDIEAAKLLIGNQLEALKRLKEV--GVTAKVNSI 191 Query: 288 MLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEYL 327 ++ GIND +++ + + + A I N +P+ + Sbjct: 192 IIPGINDG--HVIDVARKVSELGADILNCLPYYQTTETLFE 230 >gi|327393327|dbj|BAK10749.1| pyruvate formate-lyase 1- activating enzyme PflA [Pantoea ananatis AJ13355] Length = 290 Score = 42.2 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 33/245 (13%), Positives = 74/245 (30%), Gaps = 48/245 (19%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + +T E ++ VL R + G G Sbjct: 73 GCLMRCLYCHNRDTWDTHAGKE--ITVEALMADVLSYRHFMNASGGGVTASGGEAILQAE 130 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 + + E + D+ G + P I + + Sbjct: 131 FVRDWFRACKAEG----------IHTCLDTNGF----------VRRYDPVIDELLDATD- 169 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 ++ + L +++++ ILV ++ L+ Y R +V++ G +D Sbjct: 170 LVMLDLKQMNDEVHQILVGVSNHRTLD-----FARYLQKKGK-RTWIRFVVVPGYSDDDD 223 Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKR 343 L + + KI L+P++ ++ ++ + + R Sbjct: 224 TVHRLGAFTQDMANVEKIELLPYHELGKHKWIAMGEEYKLDGVKPPTKETMERVKNILLR 283 Query: 344 SGYSS 348 G+ Sbjct: 284 YGHEV 288 >gi|315608967|ref|ZP_07883939.1| pyruvate formate-lyase activating enzyme [Prevotella buccae ATCC 33574] gi|315249347|gb|EFU29364.1| pyruvate formate-lyase activating enzyme [Prevotella buccae ATCC 33574] Length = 249 Score = 42.2 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 36/239 (15%), Positives = 77/239 (32%), Gaps = 47/239 (19%) Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC + C FC+ + + +TA+E+L + RS G G Sbjct: 34 GCPMRCQFCHNPDSWQTGVGEKMTADELLDRAEHYRSYWGREGG---------------- 77 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS--FSKRRITLSTSG-FVPNIARVGEEIG 236 I + G GE L D + + A G++ + G + + + Sbjct: 78 --ITVSG-GEALMQIDFLTELFRKA-HERGINTCLDTSAQPFTRQGAWFAKFEELMKYTD 133 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 + + + + +D L + + L+ C Y + + +V++ GI D Sbjct: 134 -TILLDIKHIDDDEHRKLTKHSNRNILD-----CARYLSDIHK-PVWIRHVLIPGITDRD 186 Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECI 341 L L + +++++P++ +Y + I + Sbjct: 187 DYLARLRTFLNTLTNVERVDVLPYHTLGTYKYEKLGLDYPLKGVEPPTPERIENAKRKL 245 >gi|312137141|ref|YP_004004478.1| radical sam domain protein [Methanothermus fervidus DSM 2088] gi|311224860|gb|ADP77716.1| Radical SAM domain protein [Methanothermus fervidus DSM 2088] Length = 383 Score = 42.2 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 59/158 (37%), Gaps = 23/158 (14%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L C FC + R+ + I+ L E I K Sbjct: 93 GCNLNCIFCSVDEGRFSRSRFVDYIVDVDYLVE------------EFEKISKFKGKNLEA 140 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIARVGEEIGVML 239 + G GEP + + + + +D +S I++ ++G I R+ ++ + Sbjct: 141 HIDGQGEPSL-YPYLVELIEGLNDLKEVSI----ISMQSNGIPLNKKIIDRLEGKLD-RI 194 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277 +S+ A+ + N L KYPL+ +++ + Sbjct: 195 NLSISALDQKIANKL--HGVKYPLKKILELAEYIANSK 230 >gi|288927096|ref|ZP_06420984.1| pyruvate formate-lyase 1-activating enzyme [Prevotella buccae D17] gi|288336123|gb|EFC74516.1| pyruvate formate-lyase 1-activating enzyme [Prevotella buccae D17] Length = 243 Score = 42.2 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 35/239 (14%), Positives = 76/239 (31%), Gaps = 47/239 (19%) Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC + C FC+ + + +T +E+L + RS G G Sbjct: 31 GCPMRCRFCHNPDSWQTGVGEKMTTDELLDRAEHYRSYWGREGG---------------- 74 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS--FSKRRITLSTSG-FVPNIARVGEEIG 236 I + G GE L D + + A G++ + G + + + Sbjct: 75 --ITVSG-GEALMQIDFLTELFRKA-HERGINTCLDTSAQPFTRQGAWFAKFEELMKYTD 130 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 + + + + +D L + + L+ C Y + + +V++ GI D Sbjct: 131 -TILLDIKHIDDDEHRKLTKHSNRNILD-----CARYLSDIHK-PVWIRHVLIPGITDRD 183 Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECI 341 L L + +++++P++ +Y + I + Sbjct: 184 DYLARLRAFLDTLTNVERVDVLPYHTLGTYKYEKLGLDYPLKGVEPPTPERIENAKRKL 242 >gi|94991832|ref|YP_599931.1| pyruvate formate-lyase activating enzyme [Streptococcus pyogenes MGAS2096] gi|94545340|gb|ABF35387.1| Pyruvate formate-lyase activating enzyme [Streptococcus pyogenes MGAS2096] Length = 287 Score = 42.2 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 78/234 (33%), Gaps = 45/234 (19%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C +C+ N E+ Q R++ + G +S Sbjct: 59 GCKLRCQYCH--------NPDTWEMANQQFKIRTVNDVLKEALQYKHFWGKKGGITVSG- 109 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF----VPNIARVGEEIGV- 237 GE + D +L I + +G+ TL T GF P +V + + Sbjct: 110 -----GEAMLQID-FITALFIEAKKLGI-----HTTLDTCGFTYRPTPEYHQVLDNLLAV 158 Query: 238 -MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 L + ++ ++ +V + P + ++ R+ + +V++ G+ D Sbjct: 159 TDLILLDLKEIDEKQHKIVT---RQPNKNILQFARYLSDK--QIPVWIRHVLVPGLTDID 213 Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVT 336 L + +K + K ++P++ ++ ++ + Sbjct: 214 DHLTRLGEFVKTLKNVDKFEVLPYHTMGEFKWRELGIPYQLEGVKPPTKERVQN 267 >gi|312087917|ref|XP_003145659.1| calponin protein 2 [Loa loa] gi|307759177|gb|EFO18411.1| calponin protein 2 [Loa loa] Length = 185 Score = 42.2 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 8/93 (8%) Query: 259 RKYPLEMLIDACRHYPGLSN----ARRITFEYVMLKGINDSPRDALNLIKILKGIPAKIN 314 ++ +E + +N TFE + + D+ +D L ++ + K N Sbjct: 3 ARFSIEEAQEVLFWIEHATNIQFAKDPSTFETA--QDVADALKDGTQLCLLMNRLLDKTN 60 Query: 315 LIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYS 347 +P+NP P + ++I F + IK G Sbjct: 61 ALPYNPKPKMPFHK--MENISNFLDAIKAYGVP 91 >gi|284047923|ref|YP_003398262.1| Radical SAM domain protein [Acidaminococcus fermentans DSM 20731] gi|283952144|gb|ADB46947.1| Radical SAM domain protein [Acidaminococcus fermentans DSM 20731] Length = 468 Score = 42.2 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 36/202 (17%), Positives = 62/202 (30%), Gaps = 24/202 (11%) Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 LL P + E V +LC+ C+L C +C+ T + Sbjct: 71 LLFSPDFPVPDTFSDEPVL------KSLCLHVAHDCNLRCGYCFADTGDFGGH------- 117 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV---KKSLSIAS 205 R+L+ + IE + S R + + G GEPL N V + Sbjct: 118 ------RALMSKEVARKAIEFAIAGSKQRHNLELDLFG-GEPLMNMPVVKYIVDYVRQRE 170 Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEM 265 G + K +T + + I + + VML +SL N+ + Sbjct: 171 KETGKNI-KLTLTTNGTLLTDEIVKYLNDNRVMLVLSLDGSKKTHDNMRPYPGHVGSYDA 229 Query: 266 LIDACRHYPGLSNARRITFEYV 287 + R + + Sbjct: 230 AVKGFRKVIESRHGKNYYLRGT 251 >gi|224540942|ref|ZP_03681481.1| hypothetical protein CATMIT_00093 [Catenibacterium mitsuokai DSM 15897] gi|224526175|gb|EEF95280.1| hypothetical protein CATMIT_00093 [Catenibacterium mitsuokai DSM 15897] Length = 306 Score = 42.2 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 37/239 (15%), Positives = 78/239 (32%), Gaps = 53/239 (22%) Query: 99 GPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLL 158 G +++E I + C C C + ++ T EE++ + Sbjct: 76 GAIKMEDGLIRIDHKT--CDHCME-CVKACPGKALTQEGEIK--TVEEVVDICMQDIDFY 130 Query: 159 GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRIT 218 + G V + GE + +D + + GL + Sbjct: 131 EESNGG------------------VTLSGGEAMVQYDFMMALVHAL-KEKGL-----HLA 166 Query: 219 LSTSGFVPN--IARVGEEIGVMLAISLHAVSN-------DLRNILVPINRKYPLEMLIDA 269 + T+G V + + ++L + + N ++ N K+ +E ++ Sbjct: 167 IETTGIVDHEKFKKAAPLFDLLL-FDVKQADPMKHKKGTHVTNEVIQKNFKWAIEQGLNV 225 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEYL 327 P ++ G N++ DA L +K AK + L+PF+ + +Y Sbjct: 226 LPRIP-------------VIPGFNETLEDAKELATCIKEAGAKDVQLLPFHQFGENKYK 271 >gi|153952959|ref|YP_001393724.1| glycyl radical activating protein [Clostridium kluyveri DSM 555] gi|146345840|gb|EDK32376.1| Predicted glycyl radical enzyme activator [Clostridium kluyveri DSM 555] Length = 258 Score = 42.2 bits (98), Expect = 0.14, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 32/87 (36%), Gaps = 14/87 (16%) Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI---NLIPF-----------NPWPG 323 + +I +++K +N + ++ L+ I NL+P+ N Sbjct: 170 HRGKINLRLILIKDVNVDDQAICGIVDWLQEQNISIESINLLPYHDFGRDKYRNLNRECT 229 Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPI 350 + + + E +++GYS + Sbjct: 230 QNFEKPSDERMNEIKEYFEKAGYSVKV 256 >gi|167755395|ref|ZP_02427522.1| hypothetical protein CLORAM_00909 [Clostridium ramosum DSM 1402] gi|167704334|gb|EDS18913.1| hypothetical protein CLORAM_00909 [Clostridium ramosum DSM 1402] Length = 299 Score = 42.2 bits (98), Expect = 0.14, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 14/93 (15%) Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311 N L+ N K+ L+ I+ P ++ NDS DA L ++LK I Sbjct: 201 NDLIIKNLKWALQNKIEVLPRIP-------------VIPDFNDSLNDAKGLARLLKNIGV 247 Query: 312 -KINLIPFNPWPGCEYLCSDQKDIVTFSECIKR 343 K+ L+PF+ + +Y + + + + + + Sbjct: 248 LKVQLLPFHQFGEKKYEMLNLEYSLKNKKALHK 280 >gi|240102758|ref|YP_002959067.1| Radical SAM protein, elongator protein 3/MiaB/NifB related [Thermococcus gammatolerans EJ3] gi|239910312|gb|ACS33203.1| Radical SAM protein, elongator protein 3/MiaB/NifB related [Thermococcus gammatolerans EJ3] Length = 419 Score = 42.2 bits (98), Expect = 0.14, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 76/207 (36%), Gaps = 25/207 (12%) Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167 + ++ + + GC+L+C FC R L V+ L+ F I Sbjct: 109 LIDRGTNLIQIRGVSGCNLSCIFCSVDEGPYSR----TRKLDYVVDIDYLMKWFDEVARI 164 Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNV--KKSLSIASDSMGLSFSKR-RITLSTSGF 224 +G + + + G GEPL V ++L S + TL T Sbjct: 165 KGKGLEAH--------LDGQGEPLIYPFRVELVQALR--EHPNVSVISMQSNGTLLTDKL 214 Query: 225 VPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF 284 V + E + +S+H++ + +L+ + Y L+ +++ + Sbjct: 215 V---EELAEAGLDRVNLSIHSLDPEKAKMLM-GMKSYDLDHVLEMAEALVNA--GIDVLI 268 Query: 285 EYVMLKGINDSPRDALNLIKILKGIPA 311 V++ GIND +A I+ + I A Sbjct: 269 APVIIFGIND--DEAEAFIEFARKIGA 293 >gi|300855530|ref|YP_003780514.1| FeMo cofactor biosynthesis protein NifB [Clostridium ljungdahlii DSM 13528] gi|300435645|gb|ADK15412.1| FeMo cofactor biosynthesis protein NifB [Clostridium ljungdahlii DSM 13528] Length = 423 Score = 42.2 bits (98), Expect = 0.14, Method: Composition-based stats. Identities = 43/216 (19%), Positives = 80/216 (37%), Gaps = 42/216 (19%) Query: 124 CSLTCSFCYTGTQ--KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 C+++C+FC R E+L P + ++ R ++ Sbjct: 38 CNVSCNFCNRKYDCVNETRPGVTSEVL------------TPEGARDKFKIVRDKVRNLTV 85 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR-RITLSTSGFVPNI--ARVGEEIGVM 238 + + G G+PL NFD KKS+ + SK LST+G + ++ E Sbjct: 86 VGIAGPGDPLANFDETKKSIELIKKE-----SKDITFCLSTNGLMLPFYADKLIELGVTH 140 Query: 239 LAISLHAVSNDLRNILVPI------------NRKYPLEMLIDACRHYPGLSNARRITFEY 286 L ++++AV + + + L + ++ ++ Sbjct: 141 LTVTINAVDPKIGGKVYKFVNYLGDTFVGEEAGRVLLNNQLSGLKYAAQKGIVCKVNI-- 198 Query: 287 VMLKGINDSPRDALNLIKILKGIPAK----INLIPF 318 VM+KGIND ++K +K A ++LIP Sbjct: 199 VMIKGINDL--HIPEIVKKVKECGAYMTNIMHLIPV 232 >gi|125718548|ref|YP_001035681.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis SK36] gi|125498465|gb|ABN45131.1| Pyruvate formate-lyase-activating enzyme, putative [Streptococcus sanguinis SK36] gi|325690982|gb|EGD32982.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis SK115] gi|325695084|gb|EGD36987.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis SK150] gi|327470462|gb|EGF15918.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis SK330] gi|327490123|gb|EGF21911.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis SK1058] gi|332359096|gb|EGJ36917.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis SK49] gi|332367349|gb|EGJ45083.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sanguinis SK1059] Length = 269 Score = 42.2 bits (98), Expect = 0.14, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 71/214 (33%), Gaps = 35/214 (16%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C +C+ N E+ E + I Sbjct: 41 GCHMRCQYCH--------NPDTWEM-----ETNKSQLRTVDDVLQEALRYKGFWGNKGGI 87 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF-----VPNIARVGEEIGV 237 + G GE L D + +++ + + L TL T + + + + V Sbjct: 88 TVSG-GEALLQIDFL---IALFTKAKELGI---HCTLDTCALPFRNTPRYLKKFDKLMAV 140 Query: 238 M--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 + + + ++ + I+ K I AC Y + + +V++ G+ D Sbjct: 141 TDLVLLDIKEINEEQHKIVTSQTNKN-----ILACAKYLS-DIGKPVWIRHVLVPGLTDR 194 Query: 296 PRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327 D + L K +K + K ++P++ ++ Sbjct: 195 DDDLIELGKFVKTLKNVDKFEILPYHTMGEFKWR 228 >gi|332886402|gb|EGK06646.1| pyruvate formate-lyase 1-activating enzyme [Dysgonomonas mossii DSM 22836] Length = 239 Score = 42.2 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 38/242 (15%), Positives = 77/242 (31%), Gaps = 49/242 (20%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C +C+ + E E + + + Sbjct: 27 GCPLRCLYCHNPD---------------TWNMNDKKHELTPEEAFEEVKKVKNFIRSGGV 71 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLA 240 + G GEPL + + + + TSG++ + V E ++L Sbjct: 72 TISG-GEPLLQPQFIIELFKLCKSE------GLHTAIDTSGYILNDKVKEVLEYTDLVL- 123 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD-- 298 + + ++ D L PLE + ++ + + YV++ G D D Sbjct: 124 LDIKHINPDKYKNLTAK----PLEPTLRFMQYLSEIEK--PVWLRYVLVPGFTDDDEDLN 177 Query: 299 --ALNLIKILKGIPAKINLIPFNPWP-------GCEYL-----CSDQKDIVTFSECIKRS 344 A + + K + +++++PF+ G +Y DQ +I + Sbjct: 178 DWAKQVSEY-KNVQ-RVDILPFHQMGLHKWEQLGEDYKLRDIAPPDQSEIEKAENIFRNY 235 Query: 345 GY 346 G Sbjct: 236 GL 237 >gi|296131877|ref|YP_003639124.1| Radical SAM domain protein [Thermincola sp. JR] gi|296030455|gb|ADG81223.1| Radical SAM domain protein [Thermincola potens JR] Length = 331 Score = 42.2 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 35/220 (15%), Positives = 69/220 (31%), Gaps = 37/220 (16%) Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC+L C FC Q + + + + N Sbjct: 80 VGCNLRCGFC------------------QNWTIAHGDPETVEVSPELLVEAAAREKTNGN 121 Query: 182 I-VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 I + EPL ++ V+ + + + GL + L T+GF+ + + + + A Sbjct: 122 IGIAYTYSEPLMWYEFVRDAAR-LAHAKGL-----KNVLVTNGFINP-EPMEDLLPYIDA 174 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +++ R+ L + + T ++ G+NDS + Sbjct: 175 MNID--VKAFRDEYYNTTCAGELHPVKATVEKVFAKCHVEITTL---LVTGLNDSEEEIG 229 Query: 301 NLIKILKG----IPAKINLIPFNPWPGCEYLCSDQKDIVT 336 L L G IP L + P + + + + Sbjct: 230 ELADWLAGLSPDIPLH--LSRYFPNYKMDLPPTPLETMER 267 >gi|226324375|ref|ZP_03799893.1| hypothetical protein COPCOM_02156 [Coprococcus comes ATCC 27758] gi|225206823|gb|EEG89177.1| hypothetical protein COPCOM_02156 [Coprococcus comes ATCC 27758] Length = 299 Score = 42.2 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 28/220 (12%), Positives = 69/220 (31%), Gaps = 37/220 (16%) Query: 146 EILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS 205 EI+ Q + L+ + V ++ M D + + Sbjct: 98 EIVGQEYPVKELVKELMKDRMFYEQSGGGVTLSGGEVMAMST-------DYILQIAKALK 150 Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEEIGV--MLAISLHAVSNDLRNILVPINRKYPL 263 S +T+ T G+V + + + + +L + ++ K L Sbjct: 151 KEE---IS---LTIDTCGYVSY-DKFEAILPYVDTFLYDVKVMDPELHKKYIGVDNKLIL 203 Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK---INLIPFNP 320 + L+ RI +K +N + ++ + I LK +NL+P++ Sbjct: 204 DNLVKLSDA------GARIYIRIPTIKEVNGNVQNMEDTIHFLKKHGIHPAQVNLLPYHN 257 Query: 321 WPGCEY------------LCSDQKDIVTFSECIKRSGYSS 348 +Y +++++ +F + + + Sbjct: 258 TGSSKYPKLGMEYKGTDLHAPEKEEMESFVKLFRMQDIPT 297 >gi|124268661|ref|YP_001022665.1| hypothetical protein Mpe_A3477 [Methylibium petroleiphilum PM1] gi|124261436|gb|ABM96430.1| conserved hypothetical protein [Methylibium petroleiphilum PM1] Length = 359 Score = 42.2 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 54/132 (40%), Gaps = 14/132 (10%) Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 L + L V+ +LR ++P P+E +++ G+ +++ Y++ G+ D+ Sbjct: 223 TLGMHLEVVTPELRERVMPGKATVPVERYLESFEAAVGVFGRGQVS-TYIL-AGLGDTRE 280 Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFSECIKRSGYSSP---IR 351 L++ + L + ++PF P G + + ++ G +R Sbjct: 281 AILSIAEKLVALGVYPFVVPFVPISGTPLEDHPSPSPEFMKA---VLEPLGAMVSAGGLR 337 Query: 352 TPRGLDILAACG 363 + DI A CG Sbjct: 338 S---ADIKAGCG 346 >gi|119357644|ref|YP_912288.1| radical SAM domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119354993|gb|ABL65864.1| Radical SAM domain protein [Chlorobium phaeobacteroides DSM 266] Length = 310 Score = 42.2 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 74/230 (32%), Gaps = 40/230 (17%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+ C +C ++ + P E + G I I Sbjct: 27 CTWNCIYC---QLGRTKH----------YVTERCEFYPPDAILSEIRQTLAGGAHIDWIT 73 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFS------KRRITLSTSG---FVPNIA-RVGE 233 +G GE L +G I + T+G ++P + + E Sbjct: 74 FVGSGETL------------LYKGLGFLIGELKKITPIPIAVITNGSLLYLPEVRSELIE 121 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 V+ SL+A S +L + + +D + R+ E ++L+GIN Sbjct: 122 ADAVLP--SLNAGSKELYERIDRPAPGFTFRQHLDGLIQF-RREYRGRLWVEVMLLRGIN 178 Query: 294 DSPRDALNLIKILKGI-PAKINLI-PFNPWPGCEYLCSDQKDIVTFSECI 341 DS +L LK + P ++L+ P P + + + + Sbjct: 179 DSDEALYDLAAALKLVSPDMVHLVQPTRPATESDVSVPEDDRVEQAIRIL 228 >gi|241668391|ref|ZP_04755969.1| lysine 2,3-aminomutase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876924|ref|ZP_05249634.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842945|gb|EET21359.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 328 Score = 42.2 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 41/218 (18%), Positives = 74/218 (33%), Gaps = 50/218 (22%) Query: 110 EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169 K G + + SQ C++ C +C+ N+ PG +D Sbjct: 97 HKYHGRVLLISQTSCAIHCRYCFRKEFDYKENI-------------------PGRKDWLK 137 Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKS----LSIASDSMGLSF-SKRRITLSTSGF 224 + V++ G+PL N D V + + S L S+ + L Sbjct: 138 AFEYIANDQTIEEVILSGGDPLLNNDEVLEFFIENIQQISHIKRLRIHSRIPVVLPERMT 197 Query: 225 VPNIARVGEE-IGVMLAISLHAVS---NDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280 + + E + +L I ++ + + +R +L I++ + Sbjct: 198 NKLLKILSEHRLDTVLVIHVNHPNELDDGIREVLKEIHK------------------HGI 239 Query: 281 RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318 I + +LK IND L L I AK+ IP+ Sbjct: 240 IILNQSTLLKDINDDANVLYALSTKL--INAKV--IPY 273 >gi|150009974|ref|YP_001304717.1| pyruvate-formate lyase-activating enzyme [Parabacteroides distasonis ATCC 8503] gi|255012762|ref|ZP_05284888.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. 2_1_7] gi|256838769|ref|ZP_05544279.1| pyruvate formate-lyase 1-activating enzyme [Parabacteroides sp. D13] gi|298374331|ref|ZP_06984289.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 3_1_19] gi|301307860|ref|ZP_07213816.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 20_3] gi|149938398|gb|ABR45095.1| pyruvate-formate lyase-activating enzyme [Parabacteroides distasonis ATCC 8503] gi|256739688|gb|EEU53012.1| pyruvate formate-lyase 1-activating enzyme [Parabacteroides sp. D13] gi|298268699|gb|EFI10354.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 3_1_19] gi|300834203|gb|EFK64817.1| pyruvate formate-lyase 1-activating enzyme [Bacteroides sp. 20_3] Length = 244 Score = 42.2 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 39/215 (18%), Positives = 77/215 (35%), Gaps = 42/215 (19%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC L C +C + K+ +T E+L +VL +S + Sbjct: 28 GCPLRCLYCHNPDTWNPKGKVKYQMTPGELLTEVLRYKSFIARG---------------- 71 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 + + G GEPL + +K+ GL L TSGFV ++ E + Sbjct: 72 ---GVTVTG-GEPLLQPEFLKEFFR-LCQEQGL-----HTALDTSGFV-CTSKAWEVLDY 120 Query: 238 M--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 + + + ++ DL + L+ ++ + +D +V++ G D+ Sbjct: 121 ADLVLLDIKTLNPDL-HPLLAGVKQDNTLLFLDELER-----RGIDTWIRHVIVPGYTDN 174 Query: 296 PRDALNLIKILKGIPA--KINLIPFNPWPGCEYLC 328 L + + K+ L+P++ +Y Sbjct: 175 DEWLEALARYVSSYKVVRKVELLPYHTMGTYKYEQ 209 >gi|94266913|ref|ZP_01290568.1| Nitrogenase cofactor biosynthesis protein NifB [delta proteobacterium MLMS-1] gi|93452413|gb|EAT03027.1| Nitrogenase cofactor biosynthesis protein NifB [delta proteobacterium MLMS-1] Length = 424 Score = 42.2 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 30/205 (14%), Positives = 72/205 (35%), Gaps = 33/205 (16%) Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221 P + + +IS + G G+P N + +++ + ++ + + LS+ Sbjct: 60 PDQALVYLDRVLEKEPRISVAGIAGPGDPFANAEATMETVRLINEKH----PQMLLCLSS 115 Query: 222 SG--FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPL------------EMLI 267 +G P+I + + I+++AV + + R + + Sbjct: 116 NGMNIGPHIPELATLNVSHVTITINAVDPAVGEKIYGWVRDGKILYRGRQAAELLLGRQL 175 Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL 327 +A R + + +M+ GIND + ++ + A + FN Sbjct: 176 EAVRRL--KAAGITVKINCIMIPGINDH--HIPAVAAAMRDLEADL----FNCMALFPNA 227 Query: 328 CSDQKDIVTFSECIKRSGYS-SPIR 351 + F++ ++ S + IR Sbjct: 228 GTS------FADIVEPSKQELATIR 246 >gi|331003728|ref|ZP_08327222.1| molybdenum cofactor biosynthesis protein A [Lachnospiraceae oral taxon 107 str. F0167] gi|330412111|gb|EGG91506.1| molybdenum cofactor biosynthesis protein A [Lachnospiraceae oral taxon 107 str. F0167] Length = 323 Score = 42.2 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 69/183 (37%), Gaps = 32/183 (17%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+ C++C +K+ L+ +EI QV A S G IS Sbjct: 20 CNFRCTYCMPEAKKVEETLSLDEIY-QVAFAASECG-------------------ISKFK 59 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 + G GEPL + + + +D + + IT++++GF + + + + S+ Sbjct: 60 ITG-GEPLV-REGIVDFIKRLNDLDNV----KDITMTSNGF--YLLKYADALKSAGISSI 111 Query: 244 HAVSNDL-RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP-RDALN 301 + + L R I LE ++ + V+ KG+ND D + Sbjct: 112 NVSLDSLDREKFKKIAGVDALEDVMAGIE--ASIKAGIATKINTVIQKGVNDDELFDIIE 169 Query: 302 LIK 304 L K Sbjct: 170 LAK 172 >gi|328675885|gb|AEB28560.1| Lysine 2,3-aminomutase [Francisella cf. novicida 3523] Length = 328 Score = 42.2 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 87/265 (32%), Gaps = 62/265 (23%) Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 LL Q I+ E++D+ S D ++ + R + + +Q Sbjct: 62 LLKQVLPIVDEEVIDQAYSSD----------PLDEKNYNKVPGLLHKYHGR--VLLIAQT 109 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 C++ C +C+ N+ PG +D + Sbjct: 110 SCAVHCRYCFRKEFDYKDNI-------------------PGRKDWLQAFEYIANDQSIEE 150 Query: 183 VMMGMGEPLCNFDNVKKS----LSIASDSMGLSFSKRRITLS-----TSGFVPNIARVGE 233 V++ G+PL N D V + + + L RI + T+ + ++ Sbjct: 151 VILSGGDPLLNNDEVLEFFIENIQQIAHIKRLRI-HSRIPVVLPERITTKLLRVLSE--H 207 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 + +L I ++ + +L + + ++ + I + +LK IN Sbjct: 208 RLDTILVIHVNHPN-ELDD---------NISEVLKEIH-----KHGIIILNQSTLLKDIN 252 Query: 294 DSPRDALNLIKILKGIPAKINLIPF 318 D L L I AK+ IP+ Sbjct: 253 DDANVLYALSTKL--INAKV--IPY 273 >gi|168181754|ref|ZP_02616418.1| radical SAM domain protein [Clostridium botulinum Bf] gi|237796520|ref|YP_002864072.1| radical SAM domain-containing protein [Clostridium botulinum Ba4 str. 657] gi|182675181|gb|EDT87142.1| radical SAM domain protein [Clostridium botulinum Bf] gi|229261283|gb|ACQ52316.1| radical SAM domain protein [Clostridium botulinum Ba4 str. 657] Length = 455 Score = 42.2 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 45/211 (21%), Positives = 81/211 (38%), Gaps = 36/211 (17%) Query: 107 YIPEKSRGT---LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163 YI EKS LC++ C+L C +C+ + R L+ G Sbjct: 85 YIHEKSENFIKALCLNIAHDCNLRCKYCFADEGEYKG-------------KRELMSPGVG 131 Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223 + I+ ++ S RK + + G GEPL F +K+ + A + R T++T+G Sbjct: 132 KKAIDFVIEKSGPRKNIEVDLFG-GEPLMAFSTIKEIVEYAKEQEEKHNKTIRFTMTTNG 190 Query: 224 FVPNIARV----GEEIGVMLAISLHAV-SNDLR---------NILVPINRKYPLEMLIDA 269 + N + ++L+I ++++R + ++P +K + + D Sbjct: 191 TLLNQEIMDYLDKNMGNIVLSIDGRKEINDNVRVRVDGSGSYDSILPKIKK--MVEMRDK 248 Query: 270 CRHYPGLSNARRIT---FEYVMLKGINDSPR 297 + Y R FE VM ND Sbjct: 249 TKQYYARGTFTRENLDFFEDVMHMANNDFDE 279 >gi|168179558|ref|ZP_02614222.1| radical SAM domain protein [Clostridium botulinum NCTC 2916] gi|226950493|ref|YP_002805584.1| radical SAM domain-containing protein [Clostridium botulinum A2 str. Kyoto] gi|182669661|gb|EDT81637.1| radical SAM domain protein [Clostridium botulinum NCTC 2916] gi|226843376|gb|ACO86042.1| radical SAM domain protein [Clostridium botulinum A2 str. Kyoto] Length = 455 Score = 42.2 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 45/211 (21%), Positives = 81/211 (38%), Gaps = 36/211 (17%) Query: 107 YIPEKSRGT---LCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163 YI EKS LC++ C+L C +C+ + R L+ G Sbjct: 85 YIHEKSENFIKALCLNIAHDCNLRCKYCFADEGEYKG-------------KRELMSPGVG 131 Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223 + I+ ++ S RK + + G GEPL F +K+ + A + R T++T+G Sbjct: 132 KKAIDFVIEKSGPRKNIEVDLFG-GEPLMAFSTIKEIVEYAKEQEEKHNKTIRFTMTTNG 190 Query: 224 FVPNIARV----GEEIGVMLAISLHAV-SNDLR---------NILVPINRKYPLEMLIDA 269 + N + ++L+I ++++R + ++P +K + + D Sbjct: 191 TLLNQEIMDYLDKNMGNIVLSIDGRKEINDNVRVRVDGSGSYDSILPKIKK--MVEMRDK 248 Query: 270 CRHYPGLSNARRIT---FEYVMLKGINDSPR 297 + Y R FE VM ND Sbjct: 249 TKQYYARGTFTRENLDFFEDVMHMANNDFDE 279 >gi|219853617|ref|YP_002470739.1| hypothetical protein CKR_0274 [Clostridium kluyveri NBRC 12016] gi|219567341|dbj|BAH05325.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 266 Score = 42.2 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 32/87 (36%), Gaps = 14/87 (16%) Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI---NLIPF-----------NPWPG 323 + +I +++K +N + ++ L+ I NL+P+ N Sbjct: 178 HRGKINLRLILIKDVNVDDQAICGIVDWLQEQNISIESINLLPYHDFGRDKYRNLNRECT 237 Query: 324 CEYLCSDQKDIVTFSECIKRSGYSSPI 350 + + + E +++GYS + Sbjct: 238 QNFEKPSDERMNEIKEYFEKAGYSVKV 264 >gi|328957563|ref|YP_004374949.1| formate C-acetyltransferase activating enzyme [Carnobacterium sp. 17-4] gi|328673887|gb|AEB29933.1| formate C-acetyltransferase activating enzyme [Carnobacterium sp. 17-4] Length = 253 Score = 42.2 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 41/244 (16%), Positives = 78/244 (31%), Gaps = 55/244 (22%) Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC + C FC+ T TA+++L + L + G G Sbjct: 31 GCRMRCEFCHNPDTWNMGGGTPYTADQLLEEALSYKDYWGKKGG---------------- 74 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEE 234 I + G GEPL + D + + A G+ TL T G P +R E Sbjct: 75 --ITVSG-GEPLLHIDFLIEYFRKA-KEEGI-----HTTLDTCGQPFTYEEPFFSRFEEL 125 Query: 235 IGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 + L + + N+ L I Y N + +V++ Sbjct: 126 MKYTDLLLFDIKHIDNEKHKRLTMHGN-----ENILNMSSYLSKINK-PVWIRHVLVPER 179 Query: 293 NDSPRDALNLIKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFS 338 +D D + L + + + K+ ++P++ +Y + + + Sbjct: 180 SDDDDDLIRLSEFIHSLGNVYKVEILPYHKLGVYKYAALNIPYKLKDIEPPTLERVENAN 239 Query: 339 ECIK 342 ++ Sbjct: 240 RLLR 243 >gi|206895341|ref|YP_002246950.1| radical SAM domain protein [Coprothermobacter proteolyticus DSM 5265] gi|206737958|gb|ACI17036.1| radical SAM domain protein [Coprothermobacter proteolyticus DSM 5265] Length = 244 Score = 42.2 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 39/197 (19%), Positives = 61/197 (30%), Gaps = 32/197 (16%) Query: 124 CSLTCSFC----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 CS C FC +T L R+ + +VL + + + Sbjct: 38 CSFDCVFCELSVHTNVLTLERHTYVS--VNEVL----------------KELRNFPTQGV 79 Query: 180 SNIVMMGMGEP--LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 I + G GEP N V +L L S ST + + V Sbjct: 80 DYIALSGAGEPTLAANMGEVIDALHQKYSVPVLVLSNG----STVFMKDVQEELRKADAV 135 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 L S ++ + L + + S A + FE V++KGIND Sbjct: 136 KLTFS--SLKEESFKRLNQPAEGVTASKVARGIEEFAS-SYAGTLYFEVVVVKGINDDLS 192 Query: 298 DALNLIKILKGI-PAKI 313 + ++ L P I Sbjct: 193 EVRKTVEFLAQFKPYHI 209 >gi|78188664|ref|YP_379002.1| MoaA/NifB/PqqE family protein [Chlorobium chlorochromatii CaD3] gi|78170863|gb|ABB27959.1| MoaA/NifB/PqqE family protein [Chlorobium chlorochromatii CaD3] Length = 312 Score = 42.2 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 44/242 (18%), Positives = 83/242 (34%), Gaps = 41/242 (16%) Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166 +P KS CV Q+G T Q+ EEIL ++ A Sbjct: 21 LLPHKSCSWNCVYCQLG---RTKTYSTERQEF---FAREEILAEISQALQQHPSLDW--- 71 Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDN---VKKSLSIASDSMGLSFSKRRITLSTSG 223 I +G GE + + + + + I + T+G Sbjct: 72 ---------------ITFVGSGETML-YRGIGWLIAEVKKLTS--------VPIAVITNG 107 Query: 224 FVPNIARVGEEIGVMLAI--SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281 + ++ V E+ A+ SL+A S L + + + + + + R Sbjct: 108 SLFHLPEVRHELLQADAVLPSLNAGSEALHQRICRPAEGFTFQQHLAGLQAFRQEYCG-R 166 Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGI-PAKINL-IPFNPWPGCEYLCSDQKDIVTFSE 339 + E ++L GIND+ +L + ++ I P ++L +P P P E + + Sbjct: 167 LWLEVMLLGGINDTDEALHDLAEAIRTINPNMVHLVLPTRPAPEHEVQLPTNERLERAIA 226 Query: 340 CI 341 + Sbjct: 227 IL 228 >gi|306824472|ref|ZP_07457818.1| pyruvate formate-lyase activating enzyme [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304433259|gb|EFM36229.1| pyruvate formate-lyase activating enzyme [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 264 Score = 42.2 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 70/214 (32%), Gaps = 35/214 (16%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C +C+ N + E + I Sbjct: 37 GCHMRCQYCH--------NPDTWAM-----ETNKSRERTVDDVLTEALRYRGFWGDKGGI 83 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEEIGV 237 + G GE L D + +L + G+ TL T + + + + V Sbjct: 84 TVSG-GEALLQIDFLI-ALFTKAKEKGI-----HCTLDTCALPFRNKPRYLEKFNKLMAV 136 Query: 238 M--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 + + + ++++ I+ K I AC Y + + +V++ G+ D Sbjct: 137 TDLVLLDIKEINDEQHRIVTSQTNKN-----ILACAKYLS-DIGKPVWIRHVLVPGLTDR 190 Query: 296 PRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327 D + L K +K + K ++P++ ++ Sbjct: 191 DEDLIELGKFVKTLKNVDKFEILPYHTMGEFKWR 224 >gi|330819569|ref|YP_004348431.1| radical SAM domain protein [Burkholderia gladioli BSR3] gi|327371564|gb|AEA62919.1| radical SAM domain protein [Burkholderia gladioli BSR3] Length = 357 Score = 41.8 bits (97), Expect = 0.16, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 51/135 (37%), Gaps = 20/135 (14%) Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 L + L AV+ +R ++P PL +DA + +++ Y++ G+ D+P Sbjct: 221 TLGMHLEAVTPAVRERIMPGKASVPLSRYLDAFDAAVAVFGRGQVS-TYIL-AGLGDTPE 278 Query: 298 DALNLIK--ILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVT----FSECIKRSGYSS 348 L + + I +G+ + +PF P G + + +G Sbjct: 279 AILAMSEDLIARGVYPFV--VPFVPISGTPLESHPAPSPAFMREVLVPLGAMLGAAGL-- 334 Query: 349 PIRTPRGLDILAACG 363 R DI A CG Sbjct: 335 -----RSADIKAGCG 344 >gi|148381015|ref|YP_001255556.1| radical SAM domain protein [Clostridium botulinum A str. ATCC 3502] gi|153931936|ref|YP_001385386.1| radical SAM domain-containing protein [Clostridium botulinum A str. ATCC 19397] gi|153935318|ref|YP_001388793.1| radical SAM domain-containing protein [Clostridium botulinum A str. Hall] gi|148290499|emb|CAL84627.1| putative radical SAM protein [Clostridium botulinum A str. ATCC 3502] gi|152927980|gb|ABS33480.1| radical SAM domain protein [Clostridium botulinum A str. ATCC 19397] gi|152931232|gb|ABS36731.1| radical SAM domain protein [Clostridium botulinum A str. Hall] Length = 455 Score = 41.8 bits (97), Expect = 0.16, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 76/200 (38%), Gaps = 33/200 (16%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC++ C+L C +C+ + R L+ G + I+ ++ S Sbjct: 96 ALCLNIAHDCNLRCKYCFADEGEYKG-------------KRELMSPGVGKKAIDFVIEKS 142 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV--- 231 RK + + G GEPL F +K+ + A + R T++T+G + N + Sbjct: 143 GPRKNIEVDLFG-GEPLMAFSTIKEIVEYAKEQEEKHNKTIRFTMTTNGTLLNQEIMEYL 201 Query: 232 -GEEIGVMLAISLHAV-SNDLR---------NILVPINRKYPLEMLIDACRHYPGLSNAR 280 ++L+I ++++R + ++P +K + + D + Y Sbjct: 202 DKNMGNIVLSIDGRKEINDNVRVRVDGSGSYDSILPKIKK--MVEMRDRTKQYYARGTFT 259 Query: 281 RIT---FEYVMLKGINDSPR 297 R FE +M ND Sbjct: 260 RENLDFFEDIMHMANNDFDE 279 >gi|58696768|ref|ZP_00372305.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of Drosophila simulans] gi|58537042|gb|EAL60178.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of Drosophila simulans] Length = 375 Score = 41.8 bits (97), Expect = 0.16, Method: Composition-based stats. Identities = 42/274 (15%), Positives = 92/274 (33%), Gaps = 45/274 (16%) Query: 90 LRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSFCY-TGTQKLVRNLTAEEI 147 L + + ++E V I + + + Q GC+ +C+FC T + R++ I Sbjct: 66 LLNDDKILVSDNQVEPVLINGFEDKSRAFIEIQNGCNHSCTFCSITEARGNNRSVPINSI 125 Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207 + Q+ + ++ + ++ M V K + Sbjct: 126 IEQIRIFVENGYQEVVFTGVDITDFGTDLLGKPSLGSM--------IRRVLKDIPEL--- 174 Query: 208 MGLSFSKRRITLSTSGFVPNIARVGE------EIGVMLAISLHAVSNDLRNILVPINRKY 261 +R+ LS+ + + + L +SL + +N IL + R++ Sbjct: 175 -------KRLRLSSIDVAEVDDELMDLIANESRLMPHLHLSLQSGNN---LILKRMKRRH 224 Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGI-NDSPRDALNLIKILKGIPAKINLIPFNP 320 E +I+ C L I F ++ G ++ + + +LK K N++ + Sbjct: 225 NREQVIEFCHKMKSLRP--NIAFGADIIAGFPTETDEMFQDTVDLLK----KTNIVYLHA 278 Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 +P E + + +R R Sbjct: 279 FPYSERKNTPAARMPQ---------VPENVRKER 303 >gi|114775695|ref|ZP_01451263.1| pyruvate formate lyase activating enzyme [Mariprofundus ferrooxydans PV-1] gi|114553806|gb|EAU56187.1| pyruvate formate lyase activating enzyme [Mariprofundus ferrooxydans PV-1] Length = 264 Score = 41.8 bits (97), Expect = 0.16, Method: Composition-based stats. Identities = 39/209 (18%), Positives = 73/209 (34%), Gaps = 32/209 (15%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC C +C+ + N T L V + +F G + S Sbjct: 50 GCQFRCLYCHNPDTIKMHNGT----LRTVDHVLEEIAEFAAFLRFAGGLTISG------- 98 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLA 240 GEPL D V++ +A L L T GF+ ++I ++L Sbjct: 99 -----GEPLMQADFVREVFYLAKHDYHL-----HTALDTQGFLAAHLEDEWFDDIDLVL- 147 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 + + + D L PL+ +D R + +++ YV++ G D D Sbjct: 148 LDIKHIDPDKYLALTSQ----PLQPTLDFARRLSDM--GKKMWIRYVLVPGYTDDFDDVE 201 Query: 301 NLIKILKGIPA--KINLIPFNPWPGCEYL 327 L + + ++ ++PF+ ++ Sbjct: 202 ALADFVLTLDGVERVEVLPFHKMGEHKWE 230 >gi|39997892|ref|NP_953843.1| radical SAM domain-containing protein [Geobacter sulfurreducens PCA] gi|39984837|gb|AAR36193.1| radical SAM domain protein [Geobacter sulfurreducens PCA] gi|298506825|gb|ADI85548.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase [Geobacter sulfurreducens KN400] Length = 290 Score = 41.8 bits (97), Expect = 0.16, Method: Composition-based stats. Identities = 41/210 (19%), Positives = 81/210 (38%), Gaps = 31/210 (14%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C +C + E + +R L D + E M P VG I I Sbjct: 35 CNIKCGYCS-----RKHDCANESRPG--VTSRLLTPDEAIVKVREVMASPVVGPIIKVIG 87 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVMLAI 241 + G G+PL N + ++ + + F +ST+G +I R+ + L + Sbjct: 88 IAGPGDPLAN-EETFETFRLVGEE----FPHLIKCMSTNGLLLPESIDRLHDLGLHSLTV 142 Query: 242 SLHAVSNDLRNILVPI------------NRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 +L+A+ + + + + +E ++ R GL + V++ Sbjct: 143 TLNALDPAVGSRIYGHILYHGTVYRGEEGARILIENQLEGIRRAVGL--GMTVKVNTVLI 200 Query: 290 KGINDSPRDALNLIKILKGIPAKI-NLIPF 318 GIND ++ + +K A + N++P Sbjct: 201 PGINDG--QVSDIGRTVKEFGAFVMNIMPL 228 >gi|21674261|ref|NP_662326.1| MoaA/NifB/PqqE family protein [Chlorobium tepidum TLS] gi|21647430|gb|AAM72668.1| moaA/nifB/pqqE family protein [Chlorobium tepidum TLS] Length = 312 Score = 41.8 bits (97), Expect = 0.16, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 68/175 (38%), Gaps = 18/175 (10%) Query: 141 NLTAEEILLQV----LLARSLLGDFPGCEDI-EGMVIPSVGRKISNIVMMGMGEPLCNFD 195 + T I Q+ FP E + E + + G+ I I +G GE Sbjct: 26 SCTWNCIYCQLGRTTAFVTERREFFPKEEILSEILETVASGKPIDWITFVGSGE-----T 80 Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIAR-VGEEIGVMLAISLHAVSNDLR 251 + K L + SK + + T+G + P + R + E V+ SL+A S +L Sbjct: 81 TLYKGLDWLIAEV-KKISKIPVAVITNGSLLSDPEVRRELLEADAVLP--SLNAGSPELF 137 Query: 252 NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 + + E ++ R + ++ E ++++G+NDS + +L Sbjct: 138 ERIDRPAPGFTFEKHVEGLRLF-RQEYRGKLWVEVMLIRGVNDSEEALKEMAAVL 191 >gi|332359364|gb|EGJ37185.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis SK49] Length = 267 Score = 41.8 bits (97), Expect = 0.17, Method: Composition-based stats. Identities = 40/267 (14%), Positives = 79/267 (29%), Gaps = 81/267 (30%) Query: 123 GCSLTCSFCY-------------------TGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163 GC L C +C + T R + EEI+ +VL R + G Sbjct: 39 GCPLRCPWCSNPESQQFRPEPMLDATTKKSITMGEER--SVEEIINEVLKDRDFYEESGG 96 Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223 + G I K++ A+ G+ + T+ Sbjct: 97 GLTLSGGEIFDQFE-------------------FAKAILKAAKEKGI-----HTAIETTA 132 Query: 224 FVPNIARVGEEIGV--MLAISL-------HAVSNDLRNILVPINRKYPLEMLIDACRHYP 274 FV + + + I + L H ++N L+ N Y Sbjct: 133 FVEH-EKFVDLIQYVDFIYTDLKHYNSVNHRKVTGVKNELIVQNIHY------------- 178 Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEY------- 326 ++ + I ++ NDS DA + + ++ L+PF+ + +Y Sbjct: 179 AFTHQKMIVLRIPIIPDFNDSLEDAEQFATLFNELSIDQVQLLPFHQFGENKYKLLGRKY 238 Query: 327 -----LCSDQKDIVTFSECIKRSGYSS 348 +D+ + + + + Sbjct: 239 AMEDVKALHPEDLFEYQDVFLKHDINC 265 >gi|291571642|dbj|BAI93914.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 575 Score = 41.8 bits (97), Expect = 0.17, Method: Composition-based stats. Identities = 39/204 (19%), Positives = 67/204 (32%), Gaps = 20/204 (9%) Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167 I + + V + + CSL+C C Q R Q+ L + Sbjct: 81 IRKFHLNKIQVETSLSCSLSCWGCSRIKQVRQRR-------GQLFLDKKQFQTLIVSCAE 133 Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227 + I + G GEPL N + + I S+ + TL+T+G Sbjct: 134 DNYNIDW-------VEYCGQGEPL-NHPEFSQFVKIVSEF----LPNTQQTLTTNGNNNF 181 Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 VGEE + +S S + I + +N +T++Y+ Sbjct: 182 NLSVGEETLHRIIVSCDGASQEKYEIYRRGGNFEKCIRFMKDAVANKNANNHPHVTWKYI 241 Query: 288 MLKGINDSPRDALNLIKILKGIPA 311 + NDS + +I + I Sbjct: 242 LFDH-NDSDEEIAKANEIAQNIGV 264 >gi|260891514|ref|ZP_05902777.1| pyruvate formate-lyase 1-activating enzyme [Leptotrichia hofstadii F0254] gi|260858897|gb|EEX73397.1| pyruvate formate-lyase 1-activating enzyme [Leptotrichia hofstadii F0254] Length = 254 Score = 41.8 bits (97), Expect = 0.17, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 82/217 (37%), Gaps = 39/217 (17%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQ--VLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180 GC L C +C+ N+ EI + V+ A+ ++ + + Sbjct: 39 GCPLRCLYCH--------NVDTWEIKDKKMVMTAQEVMKEILKVKGFIKTGG-------- 82 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVM 238 V + GEPL + + + G+ L TSG++ +V E + M Sbjct: 83 --VTVSGGEPLMQPEFLMELFK-LCRENGIQ-----TALDTSGYIFSDKAKQVLELVD-M 133 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 + + + ++ + IL + L+ + ++ ++ YV++ G +D D Sbjct: 134 VLLDIKHINPEKYKILTSVE----LDNTLKFAKYLNEINK--PTWLRYVLVPGYSDDEND 187 Query: 299 ALNLIKI---LKGIPAKINLIPFNPWPGCEYLCSDQK 332 K LK + +++++PF+ ++ ++ Sbjct: 188 LHEWAKFTSQLKNVE-RVDVLPFHQMGQYKWEKVGKE 223 >gi|315428146|dbj|BAJ49731.1| tRNA-modifying enzyme [Candidatus Caldiarchaeum subterraneum] Length = 285 Score = 41.8 bits (97), Expect = 0.17, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 57/180 (31%), Gaps = 17/180 (9%) Query: 124 CSLTCSFCYTGTQKLVRNL-------TAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176 C++ C FC+ L R EEIL +++ + L G Sbjct: 79 CNMMCVFCW-RFHTLNRVQPYDGEWDKPEEILERMIAEQRQLLSGFGGNPNVSKERFREA 137 Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236 + +I + GEP + + + + +AS ++ + + ++ Sbjct: 138 MEPMHIAISLDGEPTL-YPYLAEFIQLASSR-----GMTTFLVTNGTMPERLEELLQKAQ 191 Query: 237 VM-LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 L ISL+ + K E L+ + S R ++K +N Sbjct: 192 PTSLYISLYGPDKETHVKTCKPLIKDSWERLLKSLELMGRFSC--RKIIRLTLVKDVNMH 249 >gi|298527946|ref|ZP_07015350.1| nitrogenase cofactor biosynthesis protein NifB [Desulfonatronospira thiodismutans ASO3-1] gi|298511598|gb|EFI35500.1| nitrogenase cofactor biosynthesis protein NifB [Desulfonatronospira thiodismutans ASO3-1] Length = 430 Score = 41.8 bits (97), Expect = 0.17, Method: Composition-based stats. Identities = 26/174 (14%), Positives = 62/174 (35%), Gaps = 20/174 (11%) Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF--VPNIARVGEEIGVMLAI 241 + G G+P+ N ++++ F + LS++G ++ + + + Sbjct: 81 IAGPGDPMANAPQTLETIARVRSE----FPDLLLCLSSNGLNLPDHVTELKKLGVTHATV 136 Query: 242 SLHAVSNDLRNILVPINR----KYPLEMLIDACRHYPG------LSNARRITFEYVMLKG 291 +++A+ + + R Y N + ++L G Sbjct: 137 TVNAIDPETGKDIYAWVRDSKVAYQGREAASLLWSRQKEAILKLRENGILVKMNSIVLPG 196 Query: 292 INDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRS 344 IND ++ + + +N IP +P PG + D+ D F + +++ Sbjct: 197 INDH--HIQDIAEKAGEMDVSLLNCIPVHPSPGARFENIDEPD-KAFIDSLRKK 247 >gi|150391254|ref|YP_001321303.1| nitrogenase cofactor biosynthesis protein NifB [Alkaliphilus metalliredigens QYMF] gi|149951116|gb|ABR49644.1| nitrogenase cofactor biosynthesis protein NifB [Alkaliphilus metalliredigens QYMF] Length = 415 Score = 41.8 bits (97), Expect = 0.17, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 81/223 (36%), Gaps = 41/223 (18%) Query: 124 CSLTCSFCYTGT--QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 C++ C++C Q R E+L P + ++ + Sbjct: 38 CNIQCNYCNRKYDCQNESRPGVTSEVLS------------PEEALEKYKLVKEKLSNLKV 85 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG----V 237 + + G G+PL NF+ KKSL + + LST+G + ++ +EI Sbjct: 86 VGIAGPGDPLFNFEETKKSLELIKNYD----PDVTFCLSTNGLM--LSEYADEIQKMGIT 139 Query: 238 MLAISLHAVSNDLRNILVPI------------NRKYPLEMLIDACRHYPGLSNARRITFE 285 L ++++A+ + + +E + ++ Sbjct: 140 HLTVTINAIDPKIAAQIYSTVYYKGKIYTGEEAGALMIEKQLLGLEKMKEKGIVCKVNI- 198 Query: 286 YVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEYL 327 VM+KGIN+ ++K ++ + + N++P P G ++ Sbjct: 199 -VMVKGINEH--HIEEVVKKVRTLGVFMSNIMPLIPAKGTKFE 238 >gi|42520370|ref|NP_966285.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410108|gb|AAS14219.1| MiaB-like tRNA modifying enzyme [Wolbachia endosymbiont of Drosophila melanogaster] Length = 408 Score = 41.8 bits (97), Expect = 0.17, Method: Composition-based stats. Identities = 42/274 (15%), Positives = 92/274 (33%), Gaps = 45/274 (16%) Query: 90 LRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSFCY-TGTQKLVRNLTAEEI 147 L + + ++E V I + + + Q GC+ +C+FC T + R++ I Sbjct: 99 LLNDDKILVSDNQVEPVLINGFEDKSRAFIEIQNGCNHSCTFCSITEARGNNRSVPINSI 158 Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207 + Q+ + ++ + ++ M V K + Sbjct: 159 IEQIRIFVENGYQEVVFTGVDITDFGTDLLGKPSLGSM--------IRRVLKDIPEL--- 207 Query: 208 MGLSFSKRRITLSTSGFVPNIARVGE------EIGVMLAISLHAVSNDLRNILVPINRKY 261 +R+ LS+ + + + L +SL + +N IL + R++ Sbjct: 208 -------KRLRLSSIDVAEVDDELMDLIANESRLMPHLHLSLQSGNN---LILKRMKRRH 257 Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGI-NDSPRDALNLIKILKGIPAKINLIPFNP 320 E +I+ C L I F ++ G ++ + + +LK K N++ + Sbjct: 258 NREQVIEFCHKMKSLRP--NIAFGADIIAGFPTETDEMFQDTVDLLK----KTNIVYLHA 311 Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 +P E + + +R R Sbjct: 312 FPYSERKNTPAARMPQ---------VPENVRKER 336 >gi|125717152|ref|YP_001034285.1| pyruvate formate-lyase 3 [Streptococcus sanguinis SK36] gi|125497069|gb|ABN43735.1| Pyruvate formate-lyase 3, putative [Streptococcus sanguinis SK36] gi|328945301|gb|EGG39454.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis SK1087] Length = 267 Score = 41.8 bits (97), Expect = 0.17, Method: Composition-based stats. Identities = 40/267 (14%), Positives = 79/267 (29%), Gaps = 81/267 (30%) Query: 123 GCSLTCSFCY-------------------TGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163 GC L C +C + T R + EEI+ +VL R + G Sbjct: 39 GCPLRCPWCSNPESQQFRPEPMLDATTKKSITMGEER--SVEEIINEVLKDRDFYEESGG 96 Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223 + G I + K++ A+ G+ + T+ Sbjct: 97 GLTLSGGEIFAQFE-------------------FAKAILKAAKEKGI-----HTAIETTA 132 Query: 224 FVPNIARVGEEIGV--MLAISL-------HAVSNDLRNILVPINRKYPLEMLIDACRHYP 274 FV + + + I + L H ++N L+ N Y Sbjct: 133 FVEH-EKFVDLIQYVDFIYTDLKHYNSVNHRKVTGVKNELIVQNIHY------------- 178 Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEY------- 326 ++ + I ++ NDS DA + + + L+PF+ + +Y Sbjct: 179 AFTHQKTIVLRIPVIPDFNDSLEDAERFATLFNELSINQVQLLPFHQFGENKYKLLGRKY 238 Query: 327 -----LCSDQKDIVTFSECIKRSGYSS 348 +D+ + + + + Sbjct: 239 AMEDVKALHPEDLFEYQDVFLKHDINC 265 >gi|34496868|ref|NP_901083.1| pyruvate formate lyase activating enzyme [Chromobacterium violaceum ATCC 12472] gi|34102723|gb|AAQ59088.1| pyruvate formate lyase activating enzyme [Chromobacterium violaceum ATCC 12472] Length = 259 Score = 41.8 bits (97), Expect = 0.17, Method: Composition-based stats. Identities = 41/240 (17%), Positives = 67/240 (27%), Gaps = 47/240 (19%) Query: 78 EKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TG 134 + +S D T +L + + V+ GC C +C+ T Sbjct: 12 QAVSTD-TIGYLHSTESGAGVDGPGMRFVF------------FVSGCQFRCLYCHNPDTW 58 Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194 R ++ E+ L +V L G V + GEPL Sbjct: 59 KLHNGRQVSVEQALSEVAPYARFLKFAGG-------------------VTISGGEPLMQH 99 Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI-SLHAVSNDLRNI 253 + V + GL L T GF+ V L + + + Sbjct: 100 EFVGELFHEIKQRFGL-----HTALDTQGFLHERVSDAWFDDVDLVMLDIKHSDPEKYQA 154 Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313 L PL+ +D L YV++ G+ D D L + + Sbjct: 155 LTGQ----PLQPTLDFALRLKRLRKKM--WIRYVLVPGLTDGDADIEKLADFAASLGDVV 208 >gi|227500740|ref|ZP_03930789.1| radical SAM domain protein [Anaerococcus tetradius ATCC 35098] gi|227217147|gb|EEI82500.1| radical SAM domain protein [Anaerococcus tetradius ATCC 35098] Length = 457 Score = 41.8 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 38/210 (18%), Positives = 80/210 (38%), Gaps = 37/210 (17%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L C +CY + N +EI + ++ ++ I Sbjct: 104 CNLKCKYCYINQDDVSTNKEMDEI---------------TSKKCIDYLLKISKKEFLVIN 148 Query: 184 MMGMGEPLCNFDNVKKSLSIASD-SMGLSFSKRRITLSTSGFVPNIAR----VGEEIGVM 238 G GEPL NFD +K ++ FS ++T+G + + + ++ + Sbjct: 149 FFG-GEPLLNFDVIKSTIDYCHRLDRKFVFS-----VTTNGTLLDAKTMDFFLKNDVVIN 202 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 ++I + + ND + + N + ++++ +N R + I D D Sbjct: 203 ISIDGNNIIND--SNRIYTNGQGSHSKILESVLKLRNETNLR-------AMSTITDQNLD 253 Query: 299 ALNLIKILKGIPAK-INLIP-FNPWPGCEY 326 ++L K L + +N+ P +N G ++ Sbjct: 254 LVSLFKYLDNLNFYEVNMSPAYNVLVGDKF 283 >gi|99034401|ref|ZP_01314414.1| hypothetical protein Wendoof_01000782 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] gi|225630069|ref|YP_002726860.1| MiaB-like tRNA modifying enzyme [Wolbachia sp. wRi] gi|225592050|gb|ACN95069.1| MiaB-like tRNA modifying enzyme [Wolbachia sp. wRi] Length = 408 Score = 41.8 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 42/274 (15%), Positives = 92/274 (33%), Gaps = 45/274 (16%) Query: 90 LRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSFCY-TGTQKLVRNLTAEEI 147 L + + ++E V I + + + Q GC+ +C+FC T + R++ I Sbjct: 99 LLNDDKILVSDNQVEPVLINGFEDKSRAFIEIQNGCNHSCTFCSITEARGNNRSVPINSI 158 Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDS 207 + Q+ + ++ + ++ M V K + Sbjct: 159 IEQIRIFVENGYQEVVFTGVDITDFGTDLLGKPSLGSM--------IRRVLKDIPEL--- 207 Query: 208 MGLSFSKRRITLSTSGFVPNIARVGE------EIGVMLAISLHAVSNDLRNILVPINRKY 261 +R+ LS+ + + + L +SL + +N IL + R++ Sbjct: 208 -------KRLRLSSIDVAEVDDELMDLIANESRLMPHLHLSLQSGNN---LILKRMKRRH 257 Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGI-NDSPRDALNLIKILKGIPAKINLIPFNP 320 E +I+ C L I F ++ G ++ + + +LK K N++ + Sbjct: 258 NREQVIEFCHKMKSLRP--NIAFGADIIAGFPTETDEMFQDTVDLLK----KTNIVYLHA 311 Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPR 354 +P E + + +R R Sbjct: 312 FPYSERKNTPAARMPQ---------VPENVRKER 336 >gi|327459536|gb|EGF05882.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis SK1] Length = 267 Score = 41.8 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 40/267 (14%), Positives = 79/267 (29%), Gaps = 81/267 (30%) Query: 123 GCSLTCSFCY-------------------TGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163 GC L C +C + T R + EEI+ +VL R + G Sbjct: 39 GCPLRCPWCSNPESQQFRPEPMLDATTKKSITMGEER--SVEEIINEVLKDRDFYEESGG 96 Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223 + G I + K++ A+ G+ + T+ Sbjct: 97 GLTLSGGEIFAQFE-------------------FAKAILKAAKEKGI-----HTAIETTA 132 Query: 224 FVPNIARVGEEIGV--MLAISL-------HAVSNDLRNILVPINRKYPLEMLIDACRHYP 274 FV + + + I + L H ++N L+ N Y Sbjct: 133 FVEH-EKFVDLIQYVDFIYTDLKHYNSVNHRKVTGVKNELIVQNIHY------------- 178 Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEY------- 326 ++ + I ++ NDS DA + + + L+PF+ + +Y Sbjct: 179 AFTHQKTIVLRIPVIPDFNDSLEDAERFATLFNELSINQVQLLPFHQFGENKYKLLGRKY 238 Query: 327 -----LCSDQKDIVTFSECIKRSGYSS 348 +D+ + + + + Sbjct: 239 AMKDVKALHPEDLFEYQDVFLKHDINC 265 >gi|323483059|ref|ZP_08088452.1| glycyl-radical enzyme activating protein family [Clostridium symbiosum WAL-14163] gi|323691495|ref|ZP_08105766.1| glycyl-radical enzyme activating protein family [Clostridium symbiosum WAL-14673] gi|323403599|gb|EGA95904.1| glycyl-radical enzyme activating protein family [Clostridium symbiosum WAL-14163] gi|323504468|gb|EGB20259.1| glycyl-radical enzyme activating protein family [Clostridium symbiosum WAL-14673] Length = 297 Score = 41.8 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 35/91 (38%), Gaps = 17/91 (18%) Query: 274 PGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEYL----- 327 ++ + ++ +N++ +DA +K+LK +NL+PF+ + +Y Sbjct: 208 FAVTMKVPVVARIPVIPSVNNTIQDAKEFVKLLKEHRVDTVNLLPFHQFGEKKYEELQVP 267 Query: 328 ---------CSDQKDIVTFSECIKRSGYSSP 349 +D+ + K +G + Sbjct: 268 YQLKDVKALRP--EDMTEYYNVFKNAGLNVS 296 >gi|16272144|ref|NP_438347.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus influenzae Rd KW20] gi|260580940|ref|ZP_05848764.1| pyruvate formate-lyase 1-activating enzyme [Haemophilus influenzae RdAW] gi|1172447|sp|P43751|PFLA_HAEIN RecName: Full=Pyruvate formate-lyase 1-activating enzyme; AltName: Full=Formate-C-acetyltransferase-activating enzyme 1; AltName: Full=PFL-activating enzyme 1 gi|1573135|gb|AAC21848.1| pyruvate formate-lyase activating enzyme (act) [Haemophilus influenzae Rd KW20] gi|260092429|gb|EEW76368.1| pyruvate formate-lyase 1-activating enzyme [Haemophilus influenzae RdAW] Length = 246 Score = 41.8 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 37/248 (14%), Positives = 85/248 (34%), Gaps = 54/248 (21%) Query: 123 GCSLTCSFCYTGT-----QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C+ ++ E+++ +V+ R + G G Sbjct: 29 GCLMRCKYCHNRDTWDLEGGKE--ISVEDLMKEVVTYRHFMNATGGGVTASGGEAVLQAE 86 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 + + ++ G++ L T+GFV + + +E+ Sbjct: 87 FVRD---------------WFRACK----EEGIN-----TCLDTNGFVRHYDHIIDELLD 122 Query: 238 MLAISLHAV---SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 + + L + ++ + L+ + K LE Y N YV++ G D Sbjct: 123 VTDLVLLDLKELNDQVHQNLIGVPNKRTLE-----FAKYLQKRNQH-TWIRYVVVPGYTD 176 Query: 295 SPRDALNLIKILKGIPA--KINLIPFNP-------WPGCEYL-----CSDQKDIVTFSEC 340 S D L + ++G+ K+ L+P++ G +Y ++ + Sbjct: 177 SDHDVHLLGQFIEGMTNIEKVELLPYHRLGVHKWKTLGLDYELENVLPPTKESLEHIKTI 236 Query: 341 IKRSGYSS 348 ++ G++ Sbjct: 237 LEGYGHTV 244 >gi|94263842|ref|ZP_01287647.1| Nitrogenase cofactor biosynthesis protein NifB [delta proteobacterium MLMS-1] gi|93455763|gb|EAT05934.1| Nitrogenase cofactor biosynthesis protein NifB [delta proteobacterium MLMS-1] Length = 424 Score = 41.8 bits (97), Expect = 0.19, Method: Composition-based stats. Identities = 24/164 (14%), Positives = 59/164 (35%), Gaps = 22/164 (13%) Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221 P + + +IS + G G+P N + +++ + ++ + + LS+ Sbjct: 60 PDQALVYLDRVLEKEPRISVAGIAGPGDPFANAEATMETVRLINEKH----PQMLLCLSS 115 Query: 222 SG--FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPL------------EMLI 267 +G P+I + + I+++AV + + R + + Sbjct: 116 NGMNIGPHIPELATLNVSHVTITINAVDPAVGEKIYGWVRDGKILYRGRQAAELLLGRQL 175 Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311 +A R + + +M+ GIND + ++ + A Sbjct: 176 EAVRRL--KAAGITVKINCIMIPGINDH--HIPAVAAAMRDLEA 215 >gi|329116400|ref|ZP_08245117.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus parauberis NCFD 2020] gi|326906805|gb|EGE53719.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus parauberis NCFD 2020] Length = 263 Score = 41.8 bits (97), Expect = 0.19, Method: Composition-based stats. Identities = 33/241 (13%), Positives = 71/241 (29%), Gaps = 47/241 (19%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C +C+ N E+ E + K I Sbjct: 35 GCKMRCQYCH--------NPDTWEM-----ETNKSQERTVKDVLNEALQYKHFWGKNGGI 81 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF-----VPNIARVGEEIGV 237 + G GE + D +L +++ L TL T GF ++ + V Sbjct: 82 TVSG-GEAMLQID-FITAL--FTEAKALGI---HTTLDTCGFAYRATPEYHEKLDTLLAV 134 Query: 238 M-LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 L + ++ ++ +V + + + +V++ G+ D Sbjct: 135 TDLILLDLKEIDEEQHKIVTRQPNKNILLFAQYLSE-----KGIPVWIRHVLVPGLTDID 189 Query: 297 RDALNLIKI---LKGIPAKINLIPFNPWPGCEY------------LCSDQKDIVTFSECI 341 L LK + K ++P++ ++ ++ + E + Sbjct: 190 DHLERLGAFVATLKNVD-KFEILPYHTMGEFKWRELGIPYQLEGVKPPTRERVQHAKEVM 248 Query: 342 K 342 K Sbjct: 249 K 249 >gi|94499363|ref|ZP_01305901.1| Molybdenum cofactor biosynthesis enzyme [Oceanobacter sp. RED65] gi|94428995|gb|EAT13967.1| Molybdenum cofactor biosynthesis enzyme [Oceanobacter sp. RED65] Length = 330 Score = 41.8 bits (97), Expect = 0.19, Method: Composition-based stats. Identities = 37/194 (19%), Positives = 72/194 (37%), Gaps = 29/194 (14%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C C +C + D E IE + V +++I Sbjct: 23 CDFRCVYCMAEDMTFIP-----------------RKDVLSFEQIELISQAFVELGVTSIR 65 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 + G GEPL N+ ++ + GL+ IT++T+G + ++ + L Sbjct: 66 LTG-GEPLI-RKNIVDLVAKLNQLDGLN----EITMTTNG--SQLPQLAHGLKQAGLSRL 117 Query: 244 HAVSNDLRNILVP-INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 + + L+ + R L+ ++ + RI V+L+G ND + L+L Sbjct: 118 NISLDSLKPERFKELTRTGDLQNVLVGIEA-AKQAGFDRIKLNAVILRGRND--DEILDL 174 Query: 303 IKILKGIPAKINLI 316 +K ++ I+ I Sbjct: 175 VKFVRDQGIDISFI 188 >gi|887429|emb|CAA90214.1| nifB [Pantoea agglomerans] gi|1480134|emb|CAA68008.1| nifB [Pantoea agglomerans] Length = 465 Score = 41.8 bits (97), Expect = 0.19, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 70/190 (36%), Gaps = 30/190 (15%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L C++C N + ++ ++LL PG + + + ++S + Sbjct: 51 CNLQCNYCNRKYD--CSNESRPGVVSELLL--------PGQAVAKARQVAAAIPQLSVVG 100 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVMLAI 241 + G G+PL N ++L + ++ LST+G + R+ + + + Sbjct: 101 IAGPGDPLANIGRTFQTLELLRQ----QLPDLKLCLSTNGLMLPDVVDRLVDIGVDHVTV 156 Query: 242 SLHAVSNDLRNILVPI----NRKYP--------LEMLIDACRHYPGLSNARRITFEYVML 289 +++A+ + + +Y +E + R + V++ Sbjct: 157 TMNALDPAVAEKIYAWLWYEGERYTGRMAADLLIERQAEGIRKLIEK--GVLVKINSVLI 214 Query: 290 KGINDSPRDA 299 GIND A Sbjct: 215 PGINDQHMQA 224 >gi|332288503|ref|YP_004419355.1| pyruvate formate lyase-activating enzyme 1 [Gallibacterium anatis UMN179] gi|330431399|gb|AEC16458.1| pyruvate formate lyase-activating enzyme 1 [Gallibacterium anatis UMN179] Length = 246 Score = 41.8 bits (97), Expect = 0.19, Method: Composition-based stats. Identities = 40/275 (14%), Positives = 90/275 (32%), Gaps = 55/275 (20%) Query: 96 CIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT-----QKLVRNLTAEEILLQ 150 +G E+ + + +Q GC + C +C+ +T EE++ + Sbjct: 3 AVGRIHSFESCGTVDGPGIRFILFTQ-GCLMRCKYCHNRDTWDLHSGKE--ITVEELMKE 59 Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210 V+ R + G G I + ++ G+ Sbjct: 60 VVTYRHFMNASGGGVTASGGEAILQPEFIRD---------------WFRACK----KEGI 100 Query: 211 SFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV---SNDLRNILVPINRKYPLEMLI 267 L T+GFV + +V +E+ + + L + + + L+ ++ K LE Sbjct: 101 -----HTCLDTNGFVRHYNQVIDELLDVTDLVLLDLKQLDDSIHQDLIGVSNKRTLE--- 152 Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCE 325 Y N + YV++ G D L + +K + K+ L+P++ + Sbjct: 153 --FAKYLQKRNQ-KTWIRYVVVPGYTDDEHSVQLLGEFIKDMKNIEKVELLPYHQLGKHK 209 Query: 326 Y------------LCSDQKDIVTFSECIKRSGYSS 348 + ++ + +++ G + Sbjct: 210 WETLGLKYELEDVKPPTKESLEKIKAQLEQFGLTV 244 >gi|325689506|gb|EGD31511.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis SK115] Length = 267 Score = 41.8 bits (97), Expect = 0.20, Method: Composition-based stats. Identities = 40/267 (14%), Positives = 79/267 (29%), Gaps = 81/267 (30%) Query: 123 GCSLTCSFCY-------------------TGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163 GC L C +C + T R + EEI+ +VL R + G Sbjct: 39 GCPLRCPWCSNPESQQFRPEPMLDATTKKSITMGEER--SVEEIINEVLKDRDFYEESGG 96 Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223 + G I + K++ A+ G+ + T+ Sbjct: 97 GLTLSGGEIFAQFE-------------------FAKAILKAAKEKGI-----HTAIETTA 132 Query: 224 FVPNIARVGEEIGV--MLAISL-------HAVSNDLRNILVPINRKYPLEMLIDACRHYP 274 FV + + + I + L H ++N L+ N Y Sbjct: 133 FVEH-EKFVDLIQYVDFIYTDLKHYNSVNHRKVTGVKNELIVQNIHY------------- 178 Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEY------- 326 ++ + I ++ NDS DA + + + L+PF+ + +Y Sbjct: 179 AFTHQKTIVLRIPVIPDFNDSLEDAERFATLFNELSINQVQLLPFHQFGENKYKLLGRKY 238 Query: 327 -----LCSDQKDIVTFSECIKRSGYSS 348 +D+ + + + + Sbjct: 239 AMENVKALHPEDLFEYQDVFLKHDINC 265 >gi|297617255|ref|YP_003702414.1| RNA modification enzyme, MiaB family [Syntrophothermus lipocalidus DSM 12680] gi|297145092|gb|ADI01849.1| RNA modification enzyme, MiaB family [Syntrophothermus lipocalidus DSM 12680] Length = 447 Score = 41.8 bits (97), Expect = 0.20, Method: Composition-based stats. Identities = 41/215 (19%), Positives = 82/215 (38%), Gaps = 27/215 (12%) Query: 100 PVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG-TQKLVRNLTAEEILLQVLLARSLL 158 +E + + V+ GC+ CS+C T+ R+ +I+ +V Sbjct: 140 GDIVEGLPARRTGGVSAFVNIMFGCNNFCSYCIVPFTRGRERSRKPSDIIDEV------- 192 Query: 159 GDFPGCEDIEGMVIPSVGRKISNIVMMGMG-EPLCNFDNVKKSLSIASDSMGLSFSKRRI 217 +D+ + V N+ G G EP +F ++ L + ++ GL RI Sbjct: 193 ------KDLVQQGVKEVTLLGQNVNSYGKGLEPETDFASL---LELVNEIPGL----ERI 239 Query: 218 TLSTSGFVPNIARVGEEI--GVMLAISLHAVSNDLRNILVP-INRKYPLEMLIDACRHYP 274 +TS R+ I + +HA N ++ +NR Y E +D Sbjct: 240 RFTTSHPRDVSERLLSTIASCRKVCEHIHAPLQAGSNRILKAMNRGYTREYYLDLVHKMR 299 Query: 275 GLSNARRITFEYVM-LKGINDSP-RDALNLIKILK 307 + +T + ++ G +D D ++++K ++ Sbjct: 300 EIVPGVAVTTDLIVGFPGESDRDFEDTIDMVKRIR 334 >gi|114567911|ref|YP_755065.1| radical SAM protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338846|gb|ABI69694.1| radical SAM domain protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 418 Score = 41.8 bits (97), Expect = 0.20, Method: Composition-based stats. Identities = 34/246 (13%), Positives = 83/246 (33%), Gaps = 34/246 (13%) Query: 110 EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169 R + S C+ C C + + ++ L P ++I Sbjct: 179 FYQRWEGGIPSMKACNAACIACISED-----HCGTAS-------PQNRLDFAPTVQEIVE 226 Query: 170 MVIPSVGRKISNIVMMGMG---EPLCNFDNVKKSLSIASDSMGLSFSKRRITLST-SGFV 225 + + R I+ G G EP N + +++ D I ++T +G+ Sbjct: 227 VASEHLLRARDAIISFGQGCEGEPALNGKRLSQAIRRIRDLCAQG----TINMNTNAGYC 282 Query: 226 PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRK-YPLEMLIDACRHYPGLSNARRITF 284 + + + + +++ + + N + + Y L + + + + +I+ Sbjct: 283 EGVKLMTDAGMDSMRVTIFSAIEE--NYMTYHCPQDYSLADVEYSITY--AREHGVKISL 338 Query: 285 EYVMLKGINDSPRDALNLIKILKGIPAKINLIPF-NPWPGCEYL------CSDQKDIVTF 337 + G D + L++ ++ +++I F N E+L S I F Sbjct: 339 NLLTFPGFTDRMEEVEALLEFVRKNQ--VDMIQFRNLNIDPEFLMRIFPGKSPVLGISNF 396 Query: 338 SECIKR 343 + ++ Sbjct: 397 VKLLES 402 >gi|52424458|ref|YP_087595.1| pyruvate formate lyase-activating enzyme 1 [Mannheimia succiniciproducens MBEL55E] gi|52306510|gb|AAU37010.1| PflA protein [Mannheimia succiniciproducens MBEL55E] Length = 246 Score = 41.8 bits (97), Expect = 0.20, Method: Composition-based stats. Identities = 35/246 (14%), Positives = 83/246 (33%), Gaps = 48/246 (19%) Query: 123 GCSLTCSFCYTGT-----QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C+ ++ EE++ +V+ R + G Sbjct: 29 GCLMRCKYCHNRDTWDLHGGKE--ISVEELMKEVVTYRHFMNASGGG------------- 73 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 V GE + + V+ A G++ L T+GFV + + +E+ Sbjct: 74 -----VTASGGEAILQAEFVRDWFR-ACHKEGIN-----TCLDTNGFVRHHDHIIDELID 122 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 + L ++ + P + +++ ++ + +R +V++ G DS Sbjct: 123 DTDLVLLD-LKEMNERVHESLIGVPNKRVLEFAKYLADRN--QRTWIRHVVVPGYTDSDE 179 Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKR 343 D L +K + K+ L+P++ ++ ++ + + Sbjct: 180 DLHMLGNFIKDMKNIEKVELLPYHRLGAHKWEVLGDKYELEDVKPPTKELMEHVKGLLAG 239 Query: 344 SGYSSP 349 G + Sbjct: 240 YGLNVT 245 >gi|170290152|ref|YP_001736968.1| pyruvate-formate lyase-activating enzyme [Candidatus Korarchaeum cryptofilum OPF8] gi|170174232|gb|ACB07285.1| Pyruvate-formate lyase-activating enzyme [Candidatus Korarchaeum cryptofilum OPF8] Length = 360 Score = 41.8 bits (97), Expect = 0.20, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 75/232 (32%), Gaps = 40/232 (17%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+ C +C EI S E +I R+ + Sbjct: 80 GCNFYCPWCQN-----------HEI--------SFRWPPEVPEVKPSYLIDLAKRRGDHG 120 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF--VPNIARVGEEIGVMLA 240 + + EP NFD V ++ +A D S + T+G+ + + + + Sbjct: 121 ISASLNEPATNFDFVLEASKLAKD------SGLYSMVVTNGYFTLEALRELLNAGTDGYS 174 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD-- 298 I + ++P +++ R + Y+++ G ND Sbjct: 175 IDIKGCPEMAERKILPHVNH---DIIFRNAREVIEE--GGHVEVVYLVVTGANDFESCFN 229 Query: 299 --ALNLIKILKGIPAKINLI-PFNPWPGCEYLCSDQKDIVTFSECIKRSGYS 347 + + +P IN P N W E +D K ++ F E R G + Sbjct: 230 WIVDKHLSLGPDVPLHINRYFPANRWREPE---TDLKKLLNFRERAMREGIN 278 >gi|111226135|ref|YP_716929.1| FeMo cofactor biosynthesis protein nifB [Frankia alni ACN14a] gi|111153667|emb|CAJ65426.1| FeMo cofactor biosynthesis protein nifB [Frankia alni ACN14a] Length = 470 Score = 41.8 bits (97), Expect = 0.20, Method: Composition-based stats. Identities = 35/246 (14%), Positives = 86/246 (34%), Gaps = 36/246 (14%) Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 V+ GC++ C+FC R + + P + ++ S + Sbjct: 29 VAVAPGCNIQCNFC-------NRKFDCA---NESRPGVTSTLLTPEDALAKVKLVASEIK 78 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEI 235 ++S + + G G+PL N +++ + + ++ LST+G + R+ + Sbjct: 79 QMSVLGIAGPGDPLANPKPTFRTMELVARD----CPDIKLCLSTNGLRLPEFVDRIVDLN 134 Query: 236 GVMLAISLHAVSNDLRNILVPI----NRKYPLEMLIDACRHYPGL------SNARRITFE 285 + I+++ + ++ + P ++Y Sbjct: 135 VDHVTITINMIDPEVGERIYPWVAWRGKRYTGREASKILSEQQLAGLAALTERKILCKVN 194 Query: 286 YVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPG-------CEYLCSDQKDIVTF 337 VM+ GIND + + + +KG+ A + N++P P +++ Sbjct: 195 SVMIPGIND--EHLVEVSRTVKGLGAFLHNVMPLVSAPEHGTVFGLTGQRGPTPQELKAL 252 Query: 338 SECIKR 343 + ++ Sbjct: 253 QDRCEQ 258 >gi|330834353|ref|YP_004409081.1| tRNA-modifying enzyme [Metallosphaera cuprina Ar-4] gi|329566492|gb|AEB94597.1| tRNA-modifying enzyme [Metallosphaera cuprina Ar-4] Length = 279 Score = 41.8 bits (97), Expect = 0.21, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 51/160 (31%), Gaps = 9/160 (5%) Query: 147 ILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD 206 I+ + + K S++ + GEP ++ + + + Sbjct: 24 IVERSIEEHKRSVSGYLGRTGVSKDKALEAMKPSHVAISLTGEPTL-YERLGELIRE-YH 81 Query: 207 SMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEML 266 G+ L TSG P++ EE L +SL A ++ ++ Sbjct: 82 KRGI-----TTFLVTSGVRPDVLASLEEEPTQLFVSLQAPDEQKHKLINRPVVGNSWNLV 136 Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 + P S M+K +N S DA +++ Sbjct: 137 MKTLEILPSFS--SPTVIRMTMMKDVNMSEEDAKEFSRLM 174 >gi|317132608|ref|YP_004091922.1| pyruvate formate-lyase activating enzyme [Ethanoligenens harbinense YUAN-3] gi|315470587|gb|ADU27191.1| pyruvate formate-lyase activating enzyme [Ethanoligenens harbinense YUAN-3] Length = 258 Score = 41.8 bits (97), Expect = 0.21, Method: Composition-based stats. Identities = 40/249 (16%), Positives = 69/249 (27%), Gaps = 59/249 (23%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C++C+ LA + + K + Sbjct: 43 GCPLRCAYCHNPD---------------TWLADGGEETTAQALFEKILRYRPYFGKTGGV 87 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF-VPNIAR--VGEEIGVML 239 + G GEPL + V S+ + + L TSG P AR + V+ Sbjct: 88 TVSG-GEPLLQWRFVAGLFSLLRE------AGVHTALDTSGVGDPAGARAVLAHTSLVL- 139 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 L + + L ++ R L + +V++ G+ D Sbjct: 140 -CDLKFTTEEA----YARYCGGSLRAVLAFLRQTAEL--GVPLWLRHVVVPGLTDGETHI 192 Query: 300 LNLIKILKGIPAKINL--------------------IPFNPWPGCEYLCSDQKDIVTFSE 339 L + + P NL IPF P Y ++ I Sbjct: 193 RALAALARQFP---NLERLELLPFQILCQTKYDALGIPF---PLQGYPPCPEQTIRALYR 246 Query: 340 CIKRSGYSS 348 ++ + Sbjct: 247 VLEEEHIPT 255 >gi|116250431|ref|YP_766269.1| hypothetical protein RL0659 [Rhizobium leguminosarum bv. viciae 3841] gi|115255079|emb|CAK06153.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 372 Score = 41.4 bits (96), Expect = 0.21, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 54/141 (38%), Gaps = 16/141 (11%) Query: 230 RVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 R+ E L + L AV+ ++R ++P + + + + G+ +++ Y++ Sbjct: 224 RMKEAGVDALGMHLEAVTPEVRARIMPGKAQVSIAKYMASFSAAVGVFGRGQVS-TYIL- 281 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVT----FSECIK 342 G+ DS L + + L + ++PF P G + + S + Sbjct: 282 AGLGDSREAILEICEKLVALGVYPFVVPFVPISGTPLESHPAPSPDFMHSILGPLSRMLV 341 Query: 343 RSGYSSPIRTPRGLDILAACG 363 SG + DI A CG Sbjct: 342 ASGLKAV-------DIKAGCG 355 >gi|325168572|ref|YP_004280362.1| radical SAM protein [Agrobacterium sp. H13-3] gi|325064295|gb|ADY67984.1| Radical SAM protein [Agrobacterium sp. H13-3] Length = 372 Score = 41.4 bits (96), Expect = 0.21, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 56/142 (39%), Gaps = 16/142 (11%) Query: 229 ARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVM 288 R+ L + L AV+ ++R+ ++P PLE + + + +++ Y++ Sbjct: 222 ERMKNAGADALGMHLEAVTPEVRDRIMPGKASVPLEKYLSSFEAAVKVFGRGQVS-TYIL 280 Query: 289 LKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL--CSDQKDIVT-----FSECI 341 G+ D+ L++ L + ++PF P G + + D + S+ I Sbjct: 281 -AGLGDTREAILDMSTRLVAMGVYPFVVPFVPISGTPLESHPAPKSDFMASILAPLSQII 339 Query: 342 KRSGYSSPIRTPRGLDILAACG 363 G + DI A CG Sbjct: 340 IDGGLKA-------SDIKAGCG 354 >gi|326202609|ref|ZP_08192477.1| pyruvate formate-lyase activating enzyme [Clostridium papyrosolvens DSM 2782] gi|325987193|gb|EGD48021.1| pyruvate formate-lyase activating enzyme [Clostridium papyrosolvens DSM 2782] Length = 240 Score = 41.4 bits (96), Expect = 0.21, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 80/235 (34%), Gaps = 44/235 (18%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C +C+ R+ + E ++ + ++ + ++ I Sbjct: 29 GCPLRCKYCH------NRDAWSSE-GAKLYTPQEVMKELLKYKNFIEASHGG-------I 74 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM--LA 240 + G GEPL D V++ G+ + TSG+V N+ V E + + Sbjct: 75 TVSG-GEPLIQQDFVRELFK-LCREAGI-----HTAVDTSGYV-NVEDVKETLEYTDLVL 126 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 + L + L + I Y G + + YV++ G D+ D L Sbjct: 127 LDLKQANAKKHLDLTGVEN-----ERIKLFTSYLG-EIGKPVWIRYVLVPGYTDNEEDLL 180 Query: 301 NLIKILKGIPA--KINLIPFNPWPGCEYLC------------SDQKDIVTFSECI 341 LKG KI ++P++ ++ Q+++ + Sbjct: 181 AAYNYLKGFKNIEKIEVLPYHSMGKVKWEKLNVEYPLEGVPSPSQEEVDRAKNIL 235 >gi|291288384|ref|YP_003505200.1| Radical SAM domain protein [Denitrovibrio acetiphilus DSM 12809] gi|290885544|gb|ADD69244.1| Radical SAM domain protein [Denitrovibrio acetiphilus DSM 12809] Length = 315 Score = 41.4 bits (96), Expect = 0.21, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 67/187 (35%), Gaps = 21/187 (11%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L C +C TAE R + P + + + Sbjct: 34 CTLNCIYCEV---GRTTECTAE---------RRRFENPDDILAEFRENYPHLKDDLDVVT 81 Query: 184 MMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 + G GEP N D + K L S+ +T ST N+ E+ V + Sbjct: 82 ITGAGEPTLNIDMGYIIKGLKEISE-----HPVAVLTNSTLLTDKNVQAELMELDV-VVP 135 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SL AVS + + R ++ + +A + ++ E ++ +GIND+ + Sbjct: 136 SLDAVSEEAYRRVCAPERSLDIKAINEALVEF-SHKFQGKLLVEVLLCEGINDNMEELKK 194 Query: 302 LIKILKG 308 + I+K Sbjct: 195 IAGIIKR 201 >gi|91228408|ref|ZP_01262334.1| hypothetical protein V12G01_15225 [Vibrio alginolyticus 12G01] gi|254230273|ref|ZP_04923663.1| lysine 2;3-aminomutase [Vibrio sp. Ex25] gi|262393005|ref|YP_003284859.1| lysine 2,3-aminomutase [Vibrio sp. Ex25] gi|269966836|ref|ZP_06180909.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|91188049|gb|EAS74355.1| hypothetical protein V12G01_15225 [Vibrio alginolyticus 12G01] gi|151937210|gb|EDN56078.1| lysine 2;3-aminomutase [Vibrio sp. Ex25] gi|262336599|gb|ACY50394.1| lysine 2,3-aminomutase [Vibrio sp. Ex25] gi|269828503|gb|EEZ82764.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 340 Score = 41.4 bits (96), Expect = 0.22, Method: Composition-based stats. Identities = 33/221 (14%), Positives = 66/221 (29%), Gaps = 46/221 (20%) Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153 E+ + ++R + V GC++ C +C R+ +E Sbjct: 92 DPLEEQDNEVPGLLHKYRNRALMIVKG--GCAVNCRYC------FRRHFPYQE------- 136 Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213 + G + + + N V+ G+PL D + + Sbjct: 137 ------NKSGKQAWTKCLEYMAQQPELNEVIFSGGDPLMAKD---DEIHWLLE------- 180 Query: 214 KRRITLSTSGFVPNIARVGEE------IGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267 +P+I R+ I + L + R ++ + + Sbjct: 181 -------HIAHIPHIKRLRIHSRLPVVIPARVTDELCQLLQASRLQIILVTHINHANEIN 233 Query: 268 DACRHYPGLSNARRITF--EYVMLKGINDSPRDALNLIKIL 306 D +T + V+LKG+NDS + L + L Sbjct: 234 DEFAEQMFKLKRAGVTLLNQGVLLKGVNDSVEAQVALSEAL 274 >gi|325697841|gb|EGD39725.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis SK160] Length = 258 Score = 41.4 bits (96), Expect = 0.22, Method: Composition-based stats. Identities = 39/267 (14%), Positives = 79/267 (29%), Gaps = 81/267 (30%) Query: 123 GCSLTCSFCY-------------------TGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163 GC L C +C + T R + EEI+ +VL R + G Sbjct: 30 GCPLRCPWCSNPESQQFRPEPMLDATTKKSITMGEER--SVEEIINEVLKDRDFYEESGG 87 Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223 + G I + K++ + G+ + T+ Sbjct: 88 GLTLSGGEIFAQFE-------------------FAKAILKVAKEKGI-----HTAIETTA 123 Query: 224 FVPNIARVGEEIGV--MLAISL-------HAVSNDLRNILVPINRKYPLEMLIDACRHYP 274 FV + + + I + L H ++N L+ N Y Sbjct: 124 FVEH-EKFVDLIQYVDFIYTDLKHYNSVNHRKVTGVKNELIVQNIHY------------- 169 Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEY------- 326 ++ + I ++ NDS DA + + ++ L+PF+ + +Y Sbjct: 170 AFTHQKTIVLRIPVIPDFNDSLEDAERFATLFNELSIDQVQLLPFHQFGENKYKLLGRKY 229 Query: 327 -----LCSDQKDIVTFSECIKRSGYSS 348 +D+ + + + + Sbjct: 230 AMKDVKALHPEDLFEYQDVFLKHDINC 256 >gi|324990394|gb|EGC22332.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis SK353] gi|327459135|gb|EGF05483.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis SK1057] Length = 267 Score = 41.4 bits (96), Expect = 0.22, Method: Composition-based stats. Identities = 40/267 (14%), Positives = 80/267 (29%), Gaps = 81/267 (30%) Query: 123 GCSLTCSFCY-------------------TGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163 GC L C +C + T R + EEI+ +VL R + G Sbjct: 39 GCPLRCPWCSNPESQQFRPEPMLDATTKKSITMGEER--SVEEIINEVLKDRDFYEESGG 96 Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223 + G I + K++ A+ G+ + T+ Sbjct: 97 GLTLSGGEIFAQFE-------------------FAKAILKAAKEKGI-----HTAIETTA 132 Query: 224 FVPNIARVGEEIGV--MLAISL-------HAVSNDLRNILVPINRKYPLEMLIDACRHYP 274 FV + + + I + L H ++N L+ N Y Sbjct: 133 FVEH-EKFVDLIQYVDFIYTDLKHYNSVNHRKVTGVKNELIVQNIHY------------- 178 Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEY------- 326 ++ + I ++ NDS DA + + ++ L+PF+ + +Y Sbjct: 179 AFTHQKTIVLRIPVIPDFNDSLEDAERFATLFNELSIDQVQLLPFHQFGENKYKLLGRKY 238 Query: 327 -----LCSDQKDIVTFSECIKRSGYSS 348 +D+ + + + + Sbjct: 239 AMEDVKALHPEDLFEYQDVFLKHDINC 265 >gi|284051882|ref|ZP_06382092.1| radical SAM domain protein [Arthrospira platensis str. Paraca] Length = 347 Score = 41.4 bits (96), Expect = 0.22, Method: Composition-based stats. Identities = 39/204 (19%), Positives = 67/204 (32%), Gaps = 20/204 (9%) Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167 I + + V + + CSL+C C Q R Q+ L + Sbjct: 81 IRKFHLNKIQVETSLSCSLSCWGCSRIKQVRQRR-------GQLFLDKKQFQTLIVSCAE 133 Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227 + I + G GEPL N + + I S+ + TL+T+G Sbjct: 134 DNYNIDW-------VEYCGQGEPL-NHPEFSQFVKIVSEF----LPNTQQTLTTNGNNNF 181 Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 VGEE + +S S + I + +N +T++Y+ Sbjct: 182 NLSVGEETLHRIIVSCDGASQEKYEIYRRGGNFEKCIRFMKDAVANKNANNHPHVTWKYI 241 Query: 288 MLKGINDSPRDALNLIKILKGIPA 311 + NDS + +I + I Sbjct: 242 LFDH-NDSDEEIAKANEIAQNIGV 264 >gi|145633596|ref|ZP_01789324.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae 3655] gi|229845160|ref|ZP_04465294.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus influenzae 6P18H1] gi|229847286|ref|ZP_04467389.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus influenzae 7P49H1] gi|144985802|gb|EDJ92416.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae 3655] gi|229809829|gb|EEP45552.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus influenzae 7P49H1] gi|229811871|gb|EEP47566.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus influenzae 6P18H1] Length = 246 Score = 41.4 bits (96), Expect = 0.22, Method: Composition-based stats. Identities = 35/248 (14%), Positives = 84/248 (33%), Gaps = 54/248 (21%) Query: 123 GCSLTCSFCYTGT-----QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C+ ++ E+++ +V+ R + G G Sbjct: 29 GCLMRCKYCHNRDTWDLEGGKE--ISVEDLMKEVVTYRHFMNATGGGVTASGGEAVLQAE 86 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 + + ++ G++ L T+GFV + + +E+ Sbjct: 87 FVRD---------------WFRACK----EEGIN-----TCLDTNGFVRHYNHIIDELLD 122 Query: 238 MLAISLHAV---SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 + + L + ++ + L+ + K LE Y N YV++ G D Sbjct: 123 VTDLVLLDLKELNDQVHQNLIGVPNKRTLE-----FAKYLQKRNQH-TWIRYVVVPGYTD 176 Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSEC 340 S D L + ++G+ K+ L+P++ ++ ++ + Sbjct: 177 SDHDVHLLGQFIEGMANIEKVELLPYHRLGAHKWKTLGLDYELEDVLPPTKESLEHIKTI 236 Query: 341 IKRSGYSS 348 ++ G++ Sbjct: 237 LEGYGHTV 244 >gi|323701651|ref|ZP_08113323.1| glycyl-radical enzyme activating protein family [Desulfotomaculum nigrificans DSM 574] gi|323533424|gb|EGB23291.1| glycyl-radical enzyme activating protein family [Desulfotomaculum nigrificans DSM 574] Length = 311 Score = 41.4 bits (96), Expect = 0.22, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 19/93 (20%) Query: 263 LEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKIN--LIPFNP 320 L I C+ YP I ++ G ND+ D + +KGIP + L+P++ Sbjct: 217 LSNFIKLCQLYP----KTPIIVRTPVVPGFNDTEEDIFAIANFIKGIP-HVTYELLPYHR 271 Query: 321 WPGCEY------------LCSDQKDIVTFSECI 341 + +Y ++ + + Sbjct: 272 FGESKYTYLGKQYLLTGVEKPAEERMKALRSIV 304 >gi|170746695|ref|YP_001752955.1| radical SAM domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170653217|gb|ACB22272.1| Radical SAM domain protein [Methylobacterium radiotolerans JCM 2831] Length = 367 Score = 41.4 bits (96), Expect = 0.22, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 56/150 (37%), Gaps = 20/150 (13%) Query: 225 VPNIARVGEEIGV----MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280 P+ R E + L + L AV+ ++R ++P PLE DA + Sbjct: 209 PPDDDRWFERMRASGVDALGMHLEAVTPEVRARIMPGKASVPLERYFDAFAAAVPVFGRG 268 Query: 281 RITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVT- 336 +++ Y++ G+ D+P L L G+ ++PF P G + Sbjct: 269 QVS-TYIL-AGLGDAPDAILATADRLIGMGVYPFVVPFVPISGTPLESHPAPGPDFMHAV 326 Query: 337 ---FSECIKRSGYSSPIRTPRGLDILAACG 363 +E + R+ R DI A CG Sbjct: 327 LKPLAEMLGRADL-------RSADIKAGCG 349 >gi|14520767|ref|NP_126242.1| molybdenum cofactor biosynthesis protein a related [Pyrococcus abyssi GE5] gi|5457983|emb|CAB49473.1| mooA-like molybdenum cofactor biosynthesis protein A related [Pyrococcus abyssi GE5] Length = 419 Score = 41.4 bits (96), Expect = 0.22, Method: Composition-based stats. Identities = 37/247 (14%), Positives = 86/247 (34%), Gaps = 35/247 (14%) Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167 + ++ + V GC++ C FC R + ++ L + D+ E Sbjct: 109 LIDRGTNLIQVRGSTGCNMRCIFCSVDEGPYSRTRKLDFVVDIDYLLKWF--DWVAKEKG 166 Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-- 225 +G+ + GEPL + + + + + +S I++ ++G + Sbjct: 167 KGLEAH----------LDAQGEPLL-YPFIVELVQALREHPHVSV----ISMQSNGVLLN 211 Query: 226 -PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF 284 + + E + +S+H++ + +L+ I + Y L +++ + Sbjct: 212 DKLVEELAEAGLDRVNLSIHSLDPEKAKMLMGI-KDYDLNHVLEMAEALVNA--GIDVLI 268 Query: 285 EYVMLKGINDSPRDALNLIKILKGIPA--------KINLIPFNPWPGCEYLCSDQKDIVT 336 V++ G+ND +A I+ + I A N IP+ Sbjct: 269 APVIMFGVND--DEAEAFIEFARRIGAGKRWPALGFQNYIPYKFGRNPVIAKPVP--FKE 324 Query: 337 FSECIKR 343 F ++ Sbjct: 325 FYRWLRE 331 >gi|227824374|ref|ZP_03989206.1| radical SAM family protein [Acidaminococcus sp. D21] gi|226904873|gb|EEH90791.1| radical SAM family protein [Acidaminococcus sp. D21] Length = 468 Score = 41.4 bits (96), Expect = 0.22, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 40/113 (35%), Gaps = 21/113 (18%) Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 LL P + E + +LC+ C+L C +C+ T + Sbjct: 72 LLFSPDFSVPDTFAEEPIL------KSLCLHVAHDCNLRCGYCFADTGDFGGH------- 118 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201 R+L+ + IE + S R + + G GEPL N V K + Sbjct: 119 ------RALMSKEVAQKAIEFAIKGSKKRHNLELDLFG-GEPLMNMP-VVKFI 163 >gi|170754837|ref|YP_001782699.1| radical SAM domain-containing protein [Clostridium botulinum B1 str. Okra] gi|169120049|gb|ACA43885.1| radical SAM domain protein [Clostridium botulinum B1 str. Okra] Length = 455 Score = 41.4 bits (96), Expect = 0.22, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 73/195 (37%), Gaps = 21/195 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC++ C+L C +C+ + R L+ G + I+ ++ S Sbjct: 96 ALCLNIAHDCNLRCKYCFADEGEYKG-------------KRELMSPEVGKKAIDFVIEKS 142 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV--- 231 RK + + G GEPL F +K+ + A + R T++T+G + N + Sbjct: 143 GPRKNIEVDLFG-GEPLMAFSTIKEIVEYAKEQEEKHNKTIRFTMTTNGTLLNQEIMEYL 201 Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 ++L+I ND + V + Y + ++ + + N + + Sbjct: 202 DKNMGNIVLSIDGRKEINDNVRVRVDGSGSY--DSILPKIKKMIEMRNKTKQYYARGTFT 259 Query: 291 GIN-DSPRDALNLIK 304 N D D +++ Sbjct: 260 RENLDFFEDVMHMAN 274 >gi|91784391|ref|YP_559597.1| hypothetical protein Bxe_A1409 [Burkholderia xenovorans LB400] gi|91688345|gb|ABE31545.1| Conserved hypothetical protein [Burkholderia xenovorans LB400] Length = 356 Score = 41.4 bits (96), Expect = 0.22, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 55/133 (41%), Gaps = 16/133 (12%) Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 L + L V+ +LR ++P PL ++A R + +++ Y++ G+ DS Sbjct: 220 TLGMHLEVVTPELRERIMPGKASVPLSRYMEAFRSAVAVFGRGQVS-TYIL-AGLGDSAE 277 Query: 298 DA----LNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFSECIKRSGYSSPI 350 LI++ G+ + +PF P G + + + + + ++ + Sbjct: 278 AILTMSRELIEL--GVYPFV--VPFVPISGTPLEDHPAPTPEFMKSVLQPLGGMLNAAAM 333 Query: 351 RTPRGLDILAACG 363 R+ DI A CG Sbjct: 334 RSS---DIKAGCG 343 >gi|327472949|gb|EGF18376.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis SK408] Length = 267 Score = 41.4 bits (96), Expect = 0.23, Method: Composition-based stats. Identities = 40/267 (14%), Positives = 80/267 (29%), Gaps = 81/267 (30%) Query: 123 GCSLTCSFCY-------------------TGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163 GC L C +C + T R + EEI+ +VL R + G Sbjct: 39 GCPLRCPWCSNPESQQFRPEPMLDATTKKSITMGEER--SVEEIINEVLKDRDFYEESGG 96 Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223 + G I + K++ A+ G+ + T+ Sbjct: 97 GLTLSGGEIFAQFE-------------------FAKAILKAAKEKGI-----HTAIETTA 132 Query: 224 FVPNIARVGEEIGV--MLAISL-------HAVSNDLRNILVPINRKYPLEMLIDACRHYP 274 FV + + + I + L H ++N L+ N Y Sbjct: 133 FVEH-EKFVDLIQYVDFIYTDLKHYNSVNHRKVTGVKNELIVQNIHY------------- 178 Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEY------- 326 ++ + I ++ NDS DA + + ++ L+PF+ + +Y Sbjct: 179 AFTHQKTIVLRIPVIPDFNDSLEDAERFATLFNELSIDQVQLLPFHQFGENKYKLLGRKY 238 Query: 327 -----LCSDQKDIVTFSECIKRSGYSS 348 +D+ + + + + Sbjct: 239 AMEDVKALHPEDLFEYQDVFLKHDINC 265 >gi|238018686|ref|ZP_04599112.1| hypothetical protein VEIDISOL_00530 [Veillonella dispar ATCC 17748] gi|237865157|gb|EEP66447.1| hypothetical protein VEIDISOL_00530 [Veillonella dispar ATCC 17748] Length = 575 Score = 41.4 bits (96), Expect = 0.23, Method: Composition-based stats. Identities = 45/266 (16%), Positives = 74/266 (27%), Gaps = 47/266 (17%) Query: 60 VRHLLNQHFSIIYPEIVDEKISCDG-------------TRKWLLRFPARCIGGPVEIETV 106 +R L + P + S DG T K R G + Sbjct: 186 LRQ-LADVTGVYVPSLYVPIYSEDGAFKGYDIADGVPKTIK---RHFEMLTSGGETVVAT 241 Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166 + + GC C FC G V + EIL + + LG G Sbjct: 242 NY-TEFGAMYIIEVARGCGRHCRFCMAGYCFRVPRVRPLEILKEGVDRAEKLGKKVGLMG 300 Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226 P V L N+ I S M S + R T V Sbjct: 301 AAISDYPEVDE-------------LVNY--------IRSKDMRYSCASLRADSLTQAVVD 339 Query: 227 NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286 + + + I+ S LR ++ N+ E + S + + Y Sbjct: 340 G---LADSGQKTITIAPETGSERLRRVI---NKGIS-EEHLQNAATLSAKSGIQHMRL-Y 391 Query: 287 VMLKGINDSPRDALNLIKILKGIPAK 312 +M+ ++ D ++ + + A Sbjct: 392 IMIGLPTETDEDIEAIVGLAERTQAH 417 >gi|227503005|ref|ZP_03933054.1| [formate-C-acetyltransferase]-activating enzyme [Corynebacterium accolens ATCC 49725] gi|306836762|ref|ZP_07469723.1| pyruvate formate-lyase activating enzyme [Corynebacterium accolens ATCC 49726] gi|227076066|gb|EEI14029.1| [formate-C-acetyltransferase]-activating enzyme [Corynebacterium accolens ATCC 49725] gi|304567349|gb|EFM42953.1| pyruvate formate-lyase activating enzyme [Corynebacterium accolens ATCC 49726] Length = 289 Score = 41.4 bits (96), Expect = 0.23, Method: Composition-based stats. Identities = 47/306 (15%), Positives = 100/306 (32%), Gaps = 77/306 (25%) Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTC 128 I PE+++ + + D + + V P +R T+ +S GC L C Sbjct: 34 EITRPELMEARRTGD----------IALVHSWELVTAVDGP-GTRMTMFMS---GCPLRC 79 Query: 129 SFCYTGTQKLVRNLTAEEI----LLQV-LLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 +C+ N E+ L +V + + + P + G + S G + I Sbjct: 80 QYCH--------NPDTMEMKTGTLERVDDVVKRIKRYKPIFQASGGGLTISGGEPLFQIA 131 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 V K + G+ T+ TSGF+ + R + + L + Sbjct: 132 FTR---------RVLKEV----HDAGI-----HTTIDTSGFLGSRLRDEDLDNIDLVLLD 173 Query: 244 HAVSND------LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 ++ R L P +D + + + +V++ G+ DS Sbjct: 174 VKSGDEETYQRVTRRQLQP---------TLDFGDRLNAI--GKPVWIRFVVVPGLTDSAE 222 Query: 298 DALNLIKILKGIPA---KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIK 342 + N+ I+ + ++ ++PF+ ++ +D+ + + Sbjct: 223 NVENVASIVARWKSNVERVEVLPFHNMGKDKWEGLDMTYHLADTKPPKPEDVEKVRDVFR 282 Query: 343 RSGYSS 348 G Sbjct: 283 AKGLEV 288 >gi|326391547|ref|ZP_08213079.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325992428|gb|EGD50888.1| Radical SAM domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 453 Score = 41.4 bits (96), Expect = 0.23, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 76/233 (32%), Gaps = 60/233 (25%) Query: 123 GCSLTCSFC-YTGTQKLVR----NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 C+L C +C T Q R N T ++I+ + R + Sbjct: 100 DCNLKCEYCIETEIQGFRRENMTNDTTKDIIN--WIQRKID---------------EKSY 142 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 +I +V G GEPL N D + + + + K+ +T S S + + Sbjct: 143 RILELVFYG-GEPLLNKDPIFQICNYFYNETL----KKNLTFSFSIITNGTIELSD---- 193 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 ++L L N K+ +++ ID ++ + G Sbjct: 194 ----------DEL-KTLTKNNLKF-IQITIDGSKYIHDKRRPYK--------NGEGSFSD 233 Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI 350 NL K L+ + N ++ +DI + +K G ++ + Sbjct: 234 IIKNLKKFLEFTKVAV---RINV------DSANMEDIDNLLKYLKEEGLNNRV 277 >gi|169838443|ref|ZP_02871631.1| hypothetical protein cdivTM_15306 [candidate division TM7 single-cell isolate TM7a] Length = 42 Score = 41.4 bits (96), Expect = 0.23, Method: Composition-based stats. Identities = 13/24 (54%), Positives = 16/24 (66%) Query: 174 SVGRKISNIVMMGMGEPLCNFDNV 197 G K+ N+V MGMGEP N+D V Sbjct: 19 KRGEKLGNVVYMGMGEPFLNYDAV 42 >gi|324992219|gb|EGC24141.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis SK405] gi|324994310|gb|EGC26224.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis SK678] gi|327468653|gb|EGF14132.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis SK330] gi|327490737|gb|EGF22518.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis SK1058] gi|332364834|gb|EGJ42603.1| pyruvate formate-lyase-activating enzyme [Streptococcus sanguinis SK1059] Length = 258 Score = 41.4 bits (96), Expect = 0.24, Method: Composition-based stats. Identities = 40/267 (14%), Positives = 80/267 (29%), Gaps = 81/267 (30%) Query: 123 GCSLTCSFCY-------------------TGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163 GC L C +C + T R + EEI+ +VL R + G Sbjct: 30 GCPLRCPWCSNPESQQFRPEPMLDATTKKSITMGEER--SVEEIINEVLKDRDFYEESGG 87 Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223 + G I + K++ A+ G+ + T+ Sbjct: 88 GLTLSGGEIFAQFE-------------------FAKAILKAAKEKGI-----HTAIETTA 123 Query: 224 FVPNIARVGEEIGV--MLAISL-------HAVSNDLRNILVPINRKYPLEMLIDACRHYP 274 FV + + + I + L H ++N L+ N Y Sbjct: 124 FVEH-EKFVDLIQYVDFIYTDLKHYNSVNHRKVTGVKNELIVQNIHY------------- 169 Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEY------- 326 ++ + I ++ NDS DA + + ++ L+PF+ + +Y Sbjct: 170 AFTHQKTIVLRIPVIPDFNDSLEDAERFATLFNELSIDQVQLLPFHQFGENKYKLLGRKY 229 Query: 327 -----LCSDQKDIVTFSECIKRSGYSS 348 +D+ + + + + Sbjct: 230 AMEDVKALHPEDLFEYQDVFLKHDINC 256 >gi|323353534|ref|ZP_08088067.1| pyruvate formate-lyase activating enzyme [Streptococcus sanguinis VMC66] gi|322121480|gb|EFX93243.1| pyruvate formate-lyase activating enzyme [Streptococcus sanguinis VMC66] Length = 267 Score = 41.4 bits (96), Expect = 0.24, Method: Composition-based stats. Identities = 40/267 (14%), Positives = 80/267 (29%), Gaps = 81/267 (30%) Query: 123 GCSLTCSFCY-------------------TGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163 GC L C +C + T R + EEI+ +VL R + G Sbjct: 39 GCPLRCPWCSNPESQQFRPEPMLDATTKKSITMGEER--SVEEIINEVLKDRDFYEESGG 96 Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223 + G I + K++ A+ G+ + T+ Sbjct: 97 GLTLSGGEIFAQFE-------------------FAKAILKAAKEKGI-----HTAIETTA 132 Query: 224 FVPNIARVGEEIGV--MLAISL-------HAVSNDLRNILVPINRKYPLEMLIDACRHYP 274 FV + + + I + L H ++N L+ N Y Sbjct: 133 FVEH-EKFVDLIQYVDFIYTDLKHYNSVNHRKVTGVKNELIVQNIHY------------- 178 Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEY------- 326 ++ + I ++ NDS DA + + ++ L+PF+ + +Y Sbjct: 179 AFTHQKTIVLRIPVIPDFNDSLEDAERFATLFNELSIDQVQLLPFHQFGENKYKLLGRKY 238 Query: 327 -----LCSDQKDIVTFSECIKRSGYSS 348 +D+ + + + + Sbjct: 239 AMEDVKALHPEDLFEYQDVFLKHDINC 265 >gi|62751068|dbj|BAD95760.1| NifB [Heliobacterium chlorum] Length = 277 Score = 41.4 bits (96), Expect = 0.24, Method: Composition-based stats. Identities = 36/248 (14%), Positives = 83/248 (33%), Gaps = 33/248 (13%) Query: 109 PEKSRGTLCVSSQV--GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166 P + + V GC++ C +C N + + +V+ L Sbjct: 23 PHGHGKSGRIHLPVAPGCNIACGYCVRKFD--CANESRPGVTSRVITPEQALW------R 74 Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226 +E + +G + I + G GEPL N +L + + +S++G + Sbjct: 75 VEQALASDIGPYLQVIGIAGPGEPLAN-PATYTTLELIQEHHPHLIR----CISSNGLLL 129 Query: 227 NIARVGEEIGV---MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY---------- 273 R+ + + + ++L+ + + + R ++ + Sbjct: 130 P-ERLSDLLRCGVSHVTVTLNTLDPAVGAQIYRYVRWQGRKLTGEMGAQILLEQQLLGIE 188 Query: 274 PGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI-NLIPF-NPWPGCEYLCSDQ 331 + V++ G+ND + L ++ A I NL+P N + Sbjct: 189 LAAQAGMTVKVNTVVIPGLND--KHLEELAWEVRARGASILNLMPLINQGIFADVQPPTP 246 Query: 332 KDIVTFSE 339 +++ T+ Sbjct: 247 EEMHTYRR 254 >gi|212223647|ref|YP_002306883.1| Hypothetical molybdenum cofactor biosynthesis protein A [Thermococcus onnurineus NA1] gi|212008604|gb|ACJ15986.1| Hypothetical molybdenum cofactor biosynthesis protein A [Thermococcus onnurineus NA1] Length = 419 Score = 41.4 bits (96), Expect = 0.24, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 80/223 (35%), Gaps = 35/223 (15%) Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167 + ++ + + GC+L+C FC R L V+ L+ F I Sbjct: 109 LIDRGTNLIQIRGVSGCNLSCIFCSVDEGPYSR----TRKLDYVVDIDYLIKWFDDVAQI 164 Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNV--KKSLSIASDSMGLSFSKRRITLSTSGFV 225 +G + + + G GEPL V ++L S + S + Sbjct: 165 KGKGLEAH--------LDGQGEPLLYPFRVELVQALR--EHPNVRVISMQ----SNGTLL 210 Query: 226 PN--IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283 + + + E + +SLH++ + +L+ + Y L+ ++D + Sbjct: 211 NDRLVEELAEAGLDRVNLSLHSLDPEKAKMLMGR-KDYDLQHVLDMAEALVNA--GVDVL 267 Query: 284 FEYVMLKGINDSPRDALNLIKILKGIPA--------KINLIPF 318 V++ GIND+ A I+ + I A N IP+ Sbjct: 268 IAPVIIFGINDNE--AEAFIEFARRIGAGKRWPALGFQNYIPY 308 >gi|163802718|ref|ZP_02196608.1| chaperonin GroEL [Vibrio sp. AND4] gi|159173425|gb|EDP58247.1| chaperonin GroEL [Vibrio sp. AND4] Length = 340 Score = 41.4 bits (96), Expect = 0.24, Method: Composition-based stats. Identities = 28/210 (13%), Positives = 58/210 (27%), Gaps = 42/210 (20%) Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153 I + K+R + V GC++ C +C++ N Sbjct: 92 DPLDEQGNAIPGLLHKYKNRALMIVKG--GCAINCRYCFSRHFPYQDN------------ 137 Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN----VKKSLSIASDSMG 209 + + N V++ G+PL D+ + +++ Sbjct: 138 -------KGSKSVWQTSLDYVSQHPEINEVILSGGDPLMAKDSEIEWLIQAIEHIPHIKR 190 Query: 210 LSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 L R+ + I + L + R +V + + + Sbjct: 191 LRI-HSRLPV--------------VIPARITDQLSHLLQASRLQIVLVTHINHADEINAE 235 Query: 270 CRHYPGLSNARRITF--EYVMLKGINDSPR 297 +T + V+LK +NDS Sbjct: 236 LTAKMAKLKQVGVTLLNQAVLLKDVNDSVE 265 >gi|319937834|ref|ZP_08012236.1| pyruvate formate-lyase 2-activating enzyme [Coprobacillus sp. 29_1] gi|319807064|gb|EFW03680.1| pyruvate formate-lyase 2-activating enzyme [Coprobacillus sp. 29_1] Length = 298 Score = 41.4 bits (96), Expect = 0.24, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 62/154 (40%), Gaps = 28/154 (18%) Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-PNIARVGEEIGVMLAI 241 V + GE + D VK ++ D + + T+G++ P I + + +L Sbjct: 129 VTISGGEGMSQPDFVKALVNKLKDE------GIHVAIETTGYIQPQIFQDLALLFDLLLF 182 Query: 242 SLHAVSND-------LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 + ++ + N L+ N ++ ++ I+ P ++ N Sbjct: 183 DVKHYDSEQHFLGTAVHNELIIQNLQWAIDQGIEVLPRIP-------------VIPDFNA 229 Query: 295 SPRDALNLIKILKGIPAK-INLIPFNPWPGCEYL 327 S DA L K+L+ + AK + L+PF+ + +Y Sbjct: 230 SLEDAKGLAKLLQSVGAKRVQLLPFHQFGEKKYE 263 >gi|24378975|ref|NP_720930.1| putative pyruvate formate-lyase activating enzyme [Streptococcus mutans UA159] gi|24376865|gb|AAN58236.1|AE014895_1 putative pyruvate formate-lyase activating enzyme [Streptococcus mutans UA159] Length = 258 Score = 41.4 bits (96), Expect = 0.25, Method: Composition-based stats. Identities = 37/211 (17%), Positives = 79/211 (37%), Gaps = 23/211 (10%) Query: 123 GCSLTCSFCYT-GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG--RKI 179 GC L C +C +QK E++L ++G+ EDI V + + Sbjct: 30 GCPLRCPWCSNPESQKYK----PEQMLDAETKLPMIIGEEKTVEDIISEVKKDIDFYEES 85 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV-- 237 + + GE F+ K++ + GL + T+ F + + + I Sbjct: 86 GGGLTLSGGEIFAQFE-FAKAILKCAKEEGL-----HTAIETTAFAEH-EKFTDLIQYVD 138 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 + L + + +N + ++ + + ++ + I ++ N+S Sbjct: 139 FIYTDLKHYNTIRHRKVTGVNNNFIIQNI------HYAFTHKKTIVLRIPVIPDFNNSLD 192 Query: 298 DALNLIKILKGIPA-KINLIPFNPWPGCEYL 327 DA + K+ I K+ L+PF+ + +Y Sbjct: 193 DAEHFAKLFNDIQVDKVQLLPFHQFGENKYK 223 >gi|307823808|ref|ZP_07654036.1| nitrogenase cofactor biosynthesis protein NifB [Methylobacter tundripaludum SV96] gi|307735102|gb|EFO05951.1| nitrogenase cofactor biosynthesis protein NifB [Methylobacter tundripaludum SV96] Length = 496 Score = 41.4 bits (96), Expect = 0.25, Method: Composition-based stats. Identities = 31/208 (14%), Positives = 79/208 (37%), Gaps = 29/208 (13%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C +C N + ++ +VL P + M + + +++ + Sbjct: 64 CNIQCHYCNRKYD--CSNESRPGVVSEVLT--------PDQAVKKTMAVAATIPQMTVLG 113 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVMLAI 241 + G G+PL N + ++ S+ ++ +ST+G ++ + + + I Sbjct: 114 IAGPGDPLANPERTFETFRRLSEEA----PDIKLCVSTNGLALPDSVEELSKHNIDHVTI 169 Query: 242 SLHAVSNDLRNILVPI----NRKYPLEMLIDACRHYPGL------SNARRITFEYVMLKG 291 +++ V ++ + P N++ + + VM+ G Sbjct: 170 TINCVDPEIGAKIYPWIYWNNKRITGVKAAKILIQQQQKGLEMLIAKGILVKVNSVMIPG 229 Query: 292 INDSPRDALNLIKILKGIPAKI-NLIPF 318 IND + + +++K A + N++P Sbjct: 230 IND--QHLAEVSRVVKSKGAFLHNVMPL 255 >gi|251799217|ref|YP_003013948.1| pyruvate formate-lyase activating enzyme [Paenibacillus sp. JDR-2] gi|247546843|gb|ACT03862.1| pyruvate formate-lyase activating enzyme [Paenibacillus sp. JDR-2] Length = 244 Score = 41.4 bits (96), Expect = 0.25, Method: Composition-based stats. Identities = 39/217 (17%), Positives = 74/217 (34%), Gaps = 45/217 (20%) Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC+L C FC+ T R +T ++IL ++ +P Sbjct: 27 GCALQCQFCHNPDTWDTAAGRQVTVDDILEEI-----------------EPYLPYYRGSG 69 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF--VPNIARVGEEIG- 236 I + G GEP V + GL L +SGF + + + + Sbjct: 70 GGITVTG-GEPTLQAPFVAALFKACKEKYGL-----HTALDSSGFCDPSHASELMNDTDL 123 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 V+L + R P +R + + ++ + +V++ GI D Sbjct: 124 VLLDLKQIDRDKHERLTSQPNDRILHFAKWLSSI--------SKPVWIRHVLIPGITDHA 175 Query: 297 RDALNLIKILKGIPAKIN-----LIPFNPWPGCEYLC 328 D L + + G+ +N L+P++ ++ Sbjct: 176 EDLRLLGRFIGGL---VNVERLELLPYHRMGVYKWQT 209 >gi|260753867|ref|YP_003226760.1| pyruvate formate-lyase activating enzyme [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258553230|gb|ACV76176.1| pyruvate formate-lyase activating enzyme [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 270 Score = 41.4 bits (96), Expect = 0.25, Method: Composition-based stats. Identities = 37/216 (17%), Positives = 71/216 (32%), Gaps = 40/216 (18%) Query: 122 VGCSLTCSFCYTGTQKLVRN---LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 GC+L C +C+ ++N +T E++ +V L G I G Sbjct: 55 AGCALRCQYCHNPDSWFLKNGRAVTLAEMMEEVASYADFLKRAGGGITISG--------- 105 Query: 179 ISNIVMMGMGEPLCNFD---NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI 235 GEPL + + K+ + T+GF+ A Sbjct: 106 ---------GEPLVQPEFTGALLKAAKYL---------GLHTAIDTAGFLGAQADDALLS 147 Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 L + ND R L+ + + L + YV++ G+ D+ Sbjct: 148 NTDLVLLDIKAFNDKR---YKALTGVELQPTLAFAKWLAALKK--PVWLRYVLVPGLTDN 202 Query: 296 PRDALNLIKILKGIPA--KINLIPFNPWPGCEYLCS 329 + NL + +++++PF+ ++ S Sbjct: 203 FNEIANLADFAATLGNIERVDVLPFHKMGEYKWKAS 238 >gi|289548187|ref|YP_003473175.1| nitrogenase cofactor biosynthesis protein NifB [Thermocrinis albus DSM 14484] gi|289181804|gb|ADC89048.1| nitrogenase cofactor biosynthesis protein NifB [Thermocrinis albus DSM 14484] Length = 472 Score = 41.4 bits (96), Expect = 0.26, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 92/234 (39%), Gaps = 34/234 (14%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C++C N + ++ ++L P + + + +++ + Sbjct: 52 CNIQCNYCNRKYD--CANESRPGVVSELLT--------PEEAAKKVLAVAMEIPQLTVVG 101 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLAI 241 + G G+PL N + ++ + + ++ LST+G V I ++ + + I Sbjct: 102 IAGPGDPLANPERTFRTFELIKEKA----PDIKLCLSTNGLVLDKYINKIKDLEIDHVTI 157 Query: 242 SLHAVSNDLRNILVPI----NRKYPLEMLIDAC--RHYPGL----SNARRITFEYVMLKG 291 +++AVS D + + P +R+Y + + Y GL N + V + Sbjct: 158 TINAVSVDTASKIYPWIFYNHRRYRDKEAAKILLEKQYEGLQACVENGILVKVNTVFVPE 217 Query: 292 INDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEY-----LCSDQKDIVTFSE 339 IN + L K ++ + A + N++P+ G + +++ E Sbjct: 218 ING--EEIPELSKKVRSMGAFLHNIMPYVEGEGTAFSKAGIRPPTPQELKEMQE 269 >gi|206890656|ref|YP_002248731.1| cofactor modifying protein, putative [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742594|gb|ACI21651.1| cofactor modifying protein, putative [Thermodesulfovibrio yellowstonii DSM 11347] Length = 326 Score = 41.4 bits (96), Expect = 0.26, Method: Composition-based stats. Identities = 42/247 (17%), Positives = 82/247 (33%), Gaps = 40/247 (16%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 IE +P + VS C+ +C +C T K Sbjct: 4 IEKFLMPYLDWIQIEVSGL--CNASCFYCPHTTHKK-------------------AWKGK 42 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 E I +K+ I + G GEP CN D K + +A S ++ +T+ Sbjct: 43 NLSFFEFSSIIPYLKKVKLIYLQGWGEPFCNQD-FFKFVDVAKK------SGCKVGTTTN 95 Query: 223 GFV---PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYP-LEMLIDACRHYPGLSN 278 G + +I ++ + ++A SL + RN ++ K + +I+ Sbjct: 96 GMLIEQSHIEKIIDTQMDIIAFSLTGI---KRNDILRAGTKIDKVFKVIEKLNEAKRKKG 152 Query: 279 --ARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINL---IPFNPWPGCEYLCSDQKD 333 +I Y++LK D ++ + + I++ IP + +++ Sbjct: 153 VFNPKIHIAYMLLKSNLDELKEIPEIFSKIGIQHVIISILDFIPHKSIENESLIPKTEEE 212 Query: 334 IVTFSEC 340 Sbjct: 213 FNKLKNI 219 >gi|320354791|ref|YP_004196130.1| nitrogenase cofactor biosynthesis protein NifB [Desulfobulbus propionicus DSM 2032] gi|320123293|gb|ADW18839.1| nitrogenase cofactor biosynthesis protein NifB [Desulfobulbus propionicus DSM 2032] Length = 425 Score = 41.4 bits (96), Expect = 0.26, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 59/164 (35%), Gaps = 22/164 (13%) Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITL 219 P + + +IS + + G G+P N D ++ + + + L Sbjct: 60 PEQALVYVDKVVEKEPRISVVGIAGPGDPFANPDETLATMRLIRTHHPEMI------LCL 113 Query: 220 STSG--FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPL-------EMLIDA- 269 ST+G P++ + E + I+++A+ ++ + R + L+ A Sbjct: 114 STNGMHLAPHVPELAEIGVSHVTITVNAIDPEISQHIYAWVRDGKVLYRGLQGAELLLAR 173 Query: 270 -CRHYPGLS-NARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311 R L + + +++ GIND L +K + Sbjct: 174 QLRAIALLKRHGITVKINTIVIPGINDH--HVPVLAATMKELGV 215 >gi|149134307|ref|YP_001293879.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens str. 13] gi|18144815|dbj|BAB80860.1| pyruvate formate-lyase activating enzyme [Clostridium perfringens str. 13] Length = 235 Score = 41.4 bits (96), Expect = 0.26, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 85/235 (36%), Gaps = 36/235 (15%) Query: 98 GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLA 154 G +ET+ + + V Q GC + C+FC+ T + T EE++ ++ Sbjct: 4 GRIHSLETMGLVDGPGIRFVVFMQ-GCGIRCAFCHNPDTWCKDKGTEYTPEELVNKIKRF 62 Query: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSK 214 ++ G + G GEPL + + + L G+ Sbjct: 63 KTYFNASGGG-----------------VTFSG-GEPLLQPEFLLECLK-LCKKEGI---- 99 Query: 215 RRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274 TL T+G E ++ + + LV P++ ++ + Sbjct: 100 -HTTLDTAGVGLGNYEEILEYVDLILFDVKETDPEKYKSLV----GVPIDKSLEFLK--V 152 Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327 S +++ +V++ G D+ D + + + G+ K+ L+P++ +Y Sbjct: 153 TQSMNKKMWIRHVVVPGYTDNKEDLMRIKNFVDGLNNIEKVELLPYHVLGVNKYE 207 >gi|333030502|ref|ZP_08458563.1| pyruvate formate-lyase activating enzyme [Bacteroides coprosuis DSM 18011] gi|332741099|gb|EGJ71581.1| pyruvate formate-lyase activating enzyme [Bacteroides coprosuis DSM 18011] Length = 244 Score = 41.4 bits (96), Expect = 0.26, Method: Composition-based stats. Identities = 42/248 (16%), Positives = 77/248 (31%), Gaps = 51/248 (20%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C FC+ L + + E + K + Sbjct: 28 GCPLRCLFCHNPD---------------TWLGKDYKMELTVDEAFAEIQKVKGFIKKGGV 72 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLA 240 + G GEPL D + + + + + TSGF+ + V E ++L Sbjct: 73 TISG-GEPLMQADFIYELFEKCKE------AGIHTAVDTSGFIQTKRVKEVLELTDLVL- 124 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 + + + D L PL+ +D + ++ + + YV++ G D+ D Sbjct: 125 LDVKHIDPDKYKALTSK----PLQPTLDFLNYLDEINKS--VWIRYVLIPGYTDAEDD-- 176 Query: 301 NLIKILKGIPAKIN-----LIPFNPWPGCEYL------------CSDQKDIVTFSECIKR 343 L K + N L+PF+ ++ + I E I Sbjct: 177 -LHNWCKEMVKHKNIQRIDLLPFHQMGQHKWEQMGLQYKLKDIVPPTNEQISKAEEIILS 235 Query: 344 SGYSSPIR 351 +R Sbjct: 236 YNLPLALR 243 >gi|229543199|ref|ZP_04432259.1| pyruvate formate-lyase activating enzyme [Bacillus coagulans 36D1] gi|229327619|gb|EEN93294.1| pyruvate formate-lyase activating enzyme [Bacillus coagulans 36D1] Length = 245 Score = 41.4 bits (96), Expect = 0.26, Method: Composition-based stats. Identities = 42/248 (16%), Positives = 87/248 (35%), Gaps = 61/248 (24%) Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC L C FC+ T ++ EEI+ V +P + Sbjct: 29 GCPLRCKFCHNPDTWKINEGNEMSVEEIMSDV-----------------RDYLPFIKASG 71 Query: 180 SNIVMMGMGEPLCNFD---NVKKS-----LSIASDSMGLSFSKRRITLSTSGFVPNIARV 231 I + G GEPL + D + K+ + A D+ G FS+ + + ++ Sbjct: 72 GGITVSG-GEPLLHLDFLIELFKACKEIGVHTAIDTAGGCFSRS---------LRFMEKL 121 Query: 232 GEEIGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 E + + + + + + L ++ E ++D R+ + +V++ Sbjct: 122 DELMKYTNLVLLDIKHIDPEKHKWLTGMSN----EHILDFARYLADK--HIPVWIRHVLV 175 Query: 290 KGINDSPRDALNLIKILKGIPA--KINLIPFNPWP-------GCEY-----LCSDQKDIV 335 + DS D + +P KI ++P++ G +Y ++ + Sbjct: 176 PSV-DSEEDLQKTSDFIHSLPNVEKIEILPYHKLGVYKYEALGIDYPLKGVEPPTKEQVA 234 Query: 336 TFSECIKR 343 + +KR Sbjct: 235 HAEQILKR 242 >gi|220929980|ref|YP_002506889.1| pyruvate formate-lyase activating enzyme [Clostridium cellulolyticum H10] gi|220000308|gb|ACL76909.1| pyruvate formate-lyase activating enzyme [Clostridium cellulolyticum H10] Length = 240 Score = 41.4 bits (96), Expect = 0.26, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 79/235 (33%), Gaps = 44/235 (18%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C +C+ R+ + E ++ + +L + + I Sbjct: 29 GCPLRCKYCH------NRDAWSSE-GAKLYSPQEVLKEIQKYRNFIDASHGG-------I 74 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM--LA 240 + G GEPL + VK+ G+ + TSG+V N+ V + + + Sbjct: 75 TVSG-GEPLIQHEFVKELFK-LCREAGI-----HTAVDTSGYV-NVEDVKDTLEYTDLVL 126 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 + L + L + K I Y G + + YV++ G D D L Sbjct: 127 LDLKQANAQKHLELTGVENK-----RIKLFTTYLG-EIGKPVWIRYVLIPGYTDGEEDLL 180 Query: 301 NLIKILKGIPA--KINLIPFNPWPGCEYLC------------SDQKDIVTFSECI 341 LKG KI ++P++ ++ Q+++ + Sbjct: 181 AAYNYLKGFKNIEKIEVLPYHIMGKAKWEKLNVQYPLEGVPSPTQEEVDRAKNIL 235 >gi|312864495|ref|ZP_07724726.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus downei F0415] gi|311099622|gb|EFQ57835.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus downei F0415] Length = 266 Score = 41.4 bits (96), Expect = 0.27, Method: Composition-based stats. Identities = 33/252 (13%), Positives = 81/252 (32%), Gaps = 58/252 (23%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C +C+ N E+ E + I Sbjct: 36 GCKMRCQYCH--------NPDTWEM-----ETNMSTERTVDDVLNEALRFKGYWGDTGGI 82 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--------PNIARVGEE 234 + G GE + + V + +++ L TL T GF + ++ Sbjct: 83 TVSG-GEAMLQIEFVTA---LFTEAHKLGI---HCTLDTCGFCYRPTAEYHKILDKLLAV 135 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 ++L + L ++ + I + P + ++ R+ + +V++ G+ D Sbjct: 136 TDLVL-LDLKEINPEQ----HKIVTRQPNKNILLFARYLSDK--KVPVWIRHVLVPGLTD 188 Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDI------ 334 D + L K ++ + K ++P++ ++ ++ + Sbjct: 189 FDEDLIELGKFVETLDNVDKFEILPYHTLGEFKWRELGIPYTLEGVKPPTRERVANAKKL 248 Query: 335 ---VTFSECIKR 343 ++ + +KR Sbjct: 249 MHTESYQDYLKR 260 >gi|188590043|ref|YP_001921250.1| glycyl-radical enzyme activating protein family [Clostridium botulinum E3 str. Alaska E43] gi|188500324|gb|ACD53460.1| glycyl-radical enzyme activating protein family [Clostridium botulinum E3 str. Alaska E43] Length = 313 Score = 41.4 bits (96), Expect = 0.27, Method: Composition-based stats. Identities = 10/100 (10%), Positives = 34/100 (34%), Gaps = 13/100 (13%) Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWP 322 ++++ + + R+ +++ ND+ +A+ + + INL+PF+ Sbjct: 208 DLILKNIKELINSNWQGRLVIRMPVIRDFNDTVENAMATADFMNDLGIYEINLLPFHRMG 267 Query: 323 GCEY------------LCSDQKDIVTFSECIKRSGYSSPI 350 ++ + + + + + I Sbjct: 268 DSKWTQLGKKYSYSNDEPTSEDKLDELQDIYLDRKIACYI 307 >gi|315503285|ref|YP_004082172.1| pyruvate formate-lyase activating enzyme [Micromonospora sp. L5] gi|315409904|gb|ADU08021.1| pyruvate formate-lyase activating enzyme [Micromonospora sp. L5] Length = 261 Score = 41.4 bits (96), Expect = 0.27, Method: Composition-based stats. Identities = 38/215 (17%), Positives = 71/215 (33%), Gaps = 42/215 (19%) Query: 122 VGCSLTCSFCYT-----GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176 GC L C +C++ G R T +E++ + + G Sbjct: 44 AGCPLRCRYCHSPDTWYGRSGRRR--TVDEMV------------TLATRYRRFIQVAGGG 89 Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF--VPNIARVGEE 234 +S GEPL ++ L D +GL L TSGF V + + Sbjct: 90 VTVSG------GEPLLQPAFTRELLRRCHDDLGL-----HTALDTSGFLGVRADDALLDA 138 Query: 235 IG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 V+L + R + L + + I YV++ G+ Sbjct: 139 TDLVLLDVKAGNPQTYRR-----VTGTGRLAPTLRFAQRLADR--GTPIWIRYVLVPGLT 191 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY 326 D+ + + + G+ ++ ++PF+ +Y Sbjct: 192 DAVDEVERVADVAAGLATVQRVEVLPFHRLGAHKY 226 >gi|302866870|ref|YP_003835507.1| pyruvate formate-lyase activating enzyme [Micromonospora aurantiaca ATCC 27029] gi|302569729|gb|ADL45931.1| pyruvate formate-lyase activating enzyme [Micromonospora aurantiaca ATCC 27029] Length = 275 Score = 41.4 bits (96), Expect = 0.27, Method: Composition-based stats. Identities = 38/215 (17%), Positives = 71/215 (33%), Gaps = 42/215 (19%) Query: 122 VGCSLTCSFCYT-----GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176 GC L C +C++ G R T +E++ + + G Sbjct: 58 AGCPLRCRYCHSPDTWYGRSGRRR--TVDEMV------------TLATRYRRFIQVAGGG 103 Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF--VPNIARVGEE 234 +S GEPL ++ L D +GL L TSGF V + + Sbjct: 104 VTVSG------GEPLLQPAFTRELLRRCHDDLGL-----HTALDTSGFLGVRADDALLDA 152 Query: 235 IG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 V+L + R + L + + I YV++ G+ Sbjct: 153 TDLVLLDVKAGNPQTYRR-----VTGTGRLAPTLRFAQRLADR--GTPIWIRYVLVPGLT 205 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY 326 D+ + + + G+ ++ ++PF+ +Y Sbjct: 206 DAVDEVERVADVAAGLATVQRVEVLPFHRLGAHKY 240 >gi|168187980|ref|ZP_02622615.1| heme biosynthesis [Clostridium botulinum C str. Eklund] gi|169294199|gb|EDS76332.1| heme biosynthesis [Clostridium botulinum C str. Eklund] Length = 456 Score = 41.4 bits (96), Expect = 0.27, Method: Composition-based stats. Identities = 36/196 (18%), Positives = 73/196 (37%), Gaps = 21/196 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC++ C+L C +C+ K AR ++ G + I+ +V S Sbjct: 96 ALCLNVTHDCNLRCKYCFADEGKYHG-------------ARKVMSPEVGKKAIDFVVAHS 142 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV--- 231 RK + + G GEPL +K+ ++ A + + R T++T+ + N + Sbjct: 143 GPRKNIEVDLFG-GEPLIAIKEIKEIIAYAREQEKIHNKVIRFTMTTNALLLNDEIMEYM 201 Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVML 289 E ++L+I ND N + +N + ++ + + + Sbjct: 202 DKEMGNIVLSIDGRKEVND--NTRIRVNGSGTYDSILPKIKEMVDKRDKSKQYYVRGTFT 259 Query: 290 KGINDSPRDALNLIKI 305 + D D +L + Sbjct: 260 RDNTDFYYDVKHLADL 275 >gi|307727788|ref|YP_003911001.1| Radical SAM domain-containing protein [Burkholderia sp. CCGE1003] gi|307588313|gb|ADN61710.1| Radical SAM domain protein [Burkholderia sp. CCGE1003] Length = 377 Score = 41.4 bits (96), Expect = 0.27, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 56/139 (40%), Gaps = 8/139 (5%) Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 R+ L + L V+ ++R ++P P+ +DA + G+ +++ Y+ Sbjct: 231 FERMKASGIDTLGMHLEVVTPEVRARVMPGKASVPISRYMDAFKAAVGVFGKGQVS-TYI 289 Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL-CSDQKDIVTFSECIKRSGY 346 + G+ D+ L++ + L + ++PF P G + ++ G Sbjct: 290 L-AGLGDTAEAILSISRELIDMGVYPFVVPFVPISGTPLEDHPPPSHVFM-KSILEPLG- 346 Query: 347 SSPIRTP--RGLDILAACG 363 + +R R DI A CG Sbjct: 347 -AMLRDAQMRSADIKAGCG 364 >gi|320529449|ref|ZP_08030537.1| radical SAM domain protein [Selenomonas artemidis F0399] gi|320138415|gb|EFW30309.1| radical SAM domain protein [Selenomonas artemidis F0399] Length = 463 Score = 41.0 bits (95), Expect = 0.27, Method: Composition-based stats. Identities = 31/192 (16%), Positives = 68/192 (35%), Gaps = 20/192 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 +LC+ C+L C +C+ + R+++ G ++ ++ Sbjct: 94 SLCLMVAQDCNLRCKYCFGDGGSYGGH-------------RAIMSPEVGRAAVDFIINGC 140 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234 RK I G GEPL N VK+ + S + ++TL+T+G + + + Sbjct: 141 GSRKHCEIDFFG-GEPLMNLRTVKEVTAYVRKREQESGKEFKLTLTTNGMLLSDKNIAWL 199 Query: 235 IGVMLAISLHAVSNDLR----NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 +++ L + + R ++ + ++++ R + Sbjct: 200 NDNNISVVLSS--DGRREVHDSMRPDSAGQGTYDIVMRNFRKLVEARGGNDYYLRGTYTR 257 Query: 291 GINDSPRDALNL 302 D +D L L Sbjct: 258 ENLDFTKDVLAL 269 >gi|110802909|ref|YP_699219.1| radical SAM domain-containing protein [Clostridium perfringens SM101] gi|110683410|gb|ABG86780.1| radical SAM domain protein [Clostridium perfringens SM101] Length = 450 Score = 41.0 bits (95), Expect = 0.27, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 87/270 (32%), Gaps = 40/270 (14%) Query: 50 FQGMSDISQ-----EVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIE 104 + + + ++ + L + + E E L + E Sbjct: 24 YNMIDNDNKLSSKESLIEKLKDKYPVEEIEEAYED--------LLQLVEEDALYSGDLYE 75 Query: 105 TVYIPEK----SRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160 V LC++ C+L C +C+ + R + Sbjct: 76 EVAKESDKAPSYIKALCLNVVHDCNLRCKYCFADEGEYKGC-------------RKPMSA 122 Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR-RITL 219 G + I+ ++ S G K + + G GEPL FD +K+ + G K R T+ Sbjct: 123 EVGKKAIDFVLANSGGIKNIEVDLFG-GEPLMVFDTIKEIIDY-GKKRGQEVGKNVRFTM 180 Query: 220 STSGFVPNIARV----GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275 +T+ + N R+ ++L+I ND I V + Y + ++ + Sbjct: 181 TTNATLLNDERIDYIDKNIGNIILSIDGRKEVNDAVRIRVDGSGSY--DRILPNIKKMVE 238 Query: 276 LSNARRITFEYVMLKGIN-DSPRDALNLIK 304 + + + N D +D + L Sbjct: 239 KRDPSKQYYARGTFTRNNTDFFQDVMALAN 268 >gi|296876029|ref|ZP_06900085.1| pyruvate formate-lyase activating enzyme [Streptococcus parasanguinis ATCC 15912] gi|296432940|gb|EFH18731.1| pyruvate formate-lyase activating enzyme [Streptococcus parasanguinis ATCC 15912] Length = 264 Score = 41.0 bits (95), Expect = 0.28, Method: Composition-based stats. Identities = 33/251 (13%), Positives = 79/251 (31%), Gaps = 56/251 (22%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C +C+ N + E + + I Sbjct: 37 GCQMRCQYCH--------NPDTWAM-----ETNKSRERTVDDVLEEALRYRGFWGQKGGI 83 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF-----VPNIARVGEEIGV 237 + G GE L D + +++ + + L TL T + + + V Sbjct: 84 TVSG-GEALLQIDFL---IALFTKAQELGI---HCTLDTCALPFRNTPRYLEKFDRLMAV 136 Query: 238 M--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 + + + ++++ + K I AC Y + + +V++ G+ D Sbjct: 137 TDLVLLDIKEINDERHRFVTSQTNKN-----ILACAKYLS-DIGKPVWIRHVLVPGLTDR 190 Query: 296 PRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDI------- 334 D + L K +K + K ++P++ ++ ++ + Sbjct: 191 DDDLIELGKFVKTLKNVDKFEILPYHTMGEFKWRELGIPYKLEGVKPPTKERVQNAKDLM 250 Query: 335 --VTFSECIKR 343 ++ + +KR Sbjct: 251 ETESYQDYLKR 261 >gi|168204874|ref|ZP_02630879.1| radical SAM domain protein [Clostridium perfringens E str. JGS1987] gi|168208643|ref|ZP_02634268.1| radical SAM domain protein [Clostridium perfringens B str. ATCC 3626] gi|168214137|ref|ZP_02639762.1| radical SAM domain protein [Clostridium perfringens CPE str. F4969] gi|168215568|ref|ZP_02641193.1| radical SAM domain protein [Clostridium perfringens NCTC 8239] gi|169343747|ref|ZP_02864746.1| radical SAM domain protein [Clostridium perfringens C str. JGS1495] gi|182624410|ref|ZP_02952194.1| radical SAM domain protein [Clostridium perfringens D str. JGS1721] gi|169298307|gb|EDS80397.1| radical SAM domain protein [Clostridium perfringens C str. JGS1495] gi|170663611|gb|EDT16294.1| radical SAM domain protein [Clostridium perfringens E str. JGS1987] gi|170713159|gb|EDT25341.1| radical SAM domain protein [Clostridium perfringens B str. ATCC 3626] gi|170714373|gb|EDT26555.1| radical SAM domain protein [Clostridium perfringens CPE str. F4969] gi|177910413|gb|EDT72790.1| radical SAM domain protein [Clostridium perfringens D str. JGS1721] gi|182382171|gb|EDT79650.1| radical SAM domain protein [Clostridium perfringens NCTC 8239] Length = 457 Score = 41.0 bits (95), Expect = 0.28, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 87/270 (32%), Gaps = 40/270 (14%) Query: 50 FQGMSDISQ-----EVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIE 104 + + + ++ + L + + E E L + E Sbjct: 31 YNMIDNDNKLSSKESLIEKLKDKYPVEEIEEAYED--------LLQLVEEDALYSGDLYE 82 Query: 105 TVYIPEK----SRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160 V LC++ C+L C +C+ + R + Sbjct: 83 EVAKESDKAPSYIKALCLNVVHDCNLRCKYCFADEGEYKGC-------------RKPMSA 129 Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR-RITL 219 G + I+ ++ S G K + + G GEPL FD +K+ + G K R T+ Sbjct: 130 EVGKKAIDFVLANSGGIKNIEVDLFG-GEPLMVFDTIKEIIDY-GKKRGQEVGKNVRFTM 187 Query: 220 STSGFVPNIARV----GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275 +T+ + N R+ ++L+I ND I V + Y + ++ + Sbjct: 188 TTNATLLNDERIDYIDKNIGNIILSIDGRKEVNDAVRIRVDGSGSY--DRILPNIKKMVE 245 Query: 276 LSNARRITFEYVMLKGIN-DSPRDALNLIK 304 + + + N D +D + L Sbjct: 246 KRDPSKQYYARGTFTRNNTDFFQDVMALAN 275 >gi|218439090|ref|YP_002377419.1| nitrogenase cofactor biosynthesis protein NifB [Cyanothece sp. PCC 7424] gi|218171818|gb|ACK70551.1| nitrogenase cofactor biosynthesis protein NifB [Cyanothece sp. PCC 7424] Length = 483 Score = 41.0 bits (95), Expect = 0.28, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 88/220 (40%), Gaps = 39/220 (17%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C++C N + ++ +VL P + +VI ++S + Sbjct: 67 CNIQCNYCNRKYD--CANESRPGVVSEVLT--------PEEAAHKVLVIAGKIPQMSVLG 116 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLAI 241 + G G+PL N + ++ + +D ++ LST+G + +I R+ E + I Sbjct: 117 IAGPGDPLANPNQTFRTFELVADKA----PDIKLCLSTNGLMLSDHIDRIKELNVDHVTI 172 Query: 242 SLHAVSNDLRNILVPIN----RKYP-LE----------MLIDACRHYPGLSNARRITFEY 286 +++ + ++ + P ++Y LE +DA R L + Sbjct: 173 TINMIDPEIGTKIYPWVRYNRKRYTGLEGVKILHERQMEGLDALREADILCKVNSV---- 228 Query: 287 VMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCE 325 M+ GIND + ++++ A I N++P P Sbjct: 229 -MIPGINDH--HLQEVNEVIRSKGAFIHNIMPLISAPEHG 265 >gi|15607030|ref|NP_214412.1| hypothetical protein aq_2060 [Aquifex aeolicus VF5] gi|2984285|gb|AAC07810.1| hypothetical protein aq_2060 [Aquifex aeolicus VF5] Length = 454 Score = 41.0 bits (95), Expect = 0.28, Method: Composition-based stats. Identities = 37/194 (19%), Positives = 70/194 (36%), Gaps = 30/194 (15%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L C FC RN + + E + +K +V Sbjct: 276 CNLHCVFCQRER---ERN---------FWVKGHWVWVDRDPSVEEVIREIGDPKKYEEVV 323 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI---ARVGEEIGV--M 238 G GEP F +K+ + G ++ + T+G + ++ E G+ Sbjct: 324 FCGYGEPTLRFSALKEIAKWVKERGG------KVRVDTNGLMFTFLPKEKLKELKGIVDT 377 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 ++SL+A + N + +K E +I+ + A+R+ FE ++ D D Sbjct: 378 FSVSLNAPDPETYNAVCRPAQKDAFEKVIEFIKE------AKRLGFEVIVSAVDYDGV-D 430 Query: 299 ALNLIKILKGIPAK 312 ++ K + AK Sbjct: 431 MKKTEELAKSLGAK 444 >gi|309972700|gb|ADO95901.1| Pyruvate formate-lyase activating enzyme [Haemophilus influenzae R2846] Length = 246 Score = 41.0 bits (95), Expect = 0.28, Method: Composition-based stats. Identities = 35/248 (14%), Positives = 85/248 (34%), Gaps = 54/248 (21%) Query: 123 GCSLTCSFCYTGT-----QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C+ ++ E+++ +V+ R + G G Sbjct: 29 GCLMRCKYCHNRDTWDLEGGKE--ISVEDLMKEVVTYRHFMNATGGGVTASGGEAVLQAE 86 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 + + ++ + G++ L T+GFV + + +E+ Sbjct: 87 FVRD---------------WFRACK----AEGIN-----TCLDTNGFVRHYDHIIDELLD 122 Query: 238 MLAISLHAV---SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 + + L + ++ + L+ + K LE Y N YV++ G D Sbjct: 123 VTDLVLLDLKELNDQVHQNLIGVPNKRTLE-----FAKYLQKRNQH-TWIRYVVVPGYTD 176 Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSEC 340 S D L + ++G+ K+ L+P++ ++ ++ + Sbjct: 177 SDHDVHLLGQFIEGMTNIEKVELLPYHRLGAHKWKTLGLDYELEDVLPPTKESLEHIKTI 236 Query: 341 IKRSGYSS 348 ++ G++ Sbjct: 237 LEGYGHTV 244 >gi|320161653|ref|YP_004174878.1| hypothetical protein ANT_22520 [Anaerolinea thermophila UNI-1] gi|319995507|dbj|BAJ64278.1| hypothetical protein ANT_22520 [Anaerolinea thermophila UNI-1] Length = 638 Score = 41.0 bits (95), Expect = 0.29, Method: Composition-based stats. Identities = 40/242 (16%), Positives = 75/242 (30%), Gaps = 44/242 (18%) Query: 123 GCSLTCSFCYTGTQKL-VRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC+ C FC+ G VR EEIL + A G + +++ Sbjct: 272 GCTRGCRFCHAGMVTRPVRERPVEEILQAIETALEATGYEEVGLLSLASSDYTHIQELVE 331 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 V G+ + +S RI + + + + G LA Sbjct: 332 AVTQQFGD----------------QKITVSLPSLRIESFSVELMKGLKSLKPSGGFTLAP 375 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 A S +R ++ N+ P E +++ R ++ Y M+ ++ D Sbjct: 376 E--AASERMRRVI---NKFIPHEQILETAREI--FAHGWTTIKLYFMIGHPEETLEDVQA 428 Query: 302 LIKILK----------GIPAKIN-----LIPFNPWPGCEYLCSDQKDIVTFS--ECIKRS 344 +I + G AK++ IP P + + + + + Sbjct: 429 IIDLCHAVLREGRRICGGRAKVHAGVSTFIP---KPHTPFQWVSADTMEQIQAKQALLQQ 485 Query: 345 GY 346 G Sbjct: 486 GL 487 >gi|257462536|ref|ZP_05626947.1| Fe-S oxidoreductase [Fusobacterium sp. D12] gi|317060190|ref|ZP_07924675.1| Fe-S oxidoreductase [Fusobacterium sp. D12] gi|313685866|gb|EFS22701.1| Fe-S oxidoreductase [Fusobacterium sp. D12] Length = 274 Score = 41.0 bits (95), Expect = 0.29, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 65/186 (34%), Gaps = 23/186 (12%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L C FC ++ T E R F + + V K + Sbjct: 28 CNLNCVFCEC---GPTKDWTVE---------RKHFISFEDFKQELEEALQQV--KPDYVT 73 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG--VMLAI 241 G GEP + D + K + +I + T+ + V EEI ++ Sbjct: 74 FSGSGEPTLSLD-LGKIIRYIKQHY-----SVKIAVITNSLLLYREDVLEEIQEADLIMP 127 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SLH V ++ + Y +E+L++ R I E +++GIN S D Sbjct: 128 SLHTVKQEVFEKIGRAYPGYRIELLLEGLRK-LSSRFQGEIDLELFLIEGINTSLEDLKE 186 Query: 302 LIKILK 307 +K Sbjct: 187 YADFVK 192 >gi|170761673|ref|YP_001788384.1| radical SAM domain-containing protein [Clostridium botulinum A3 str. Loch Maree] gi|169408662|gb|ACA57073.1| radical SAM domain protein [Clostridium botulinum A3 str. Loch Maree] Length = 455 Score = 41.0 bits (95), Expect = 0.29, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 76/200 (38%), Gaps = 33/200 (16%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC++ C+L C +C+ + R L+ G + I+ ++ S Sbjct: 96 ALCLNIAHDCNLRCKYCFADEGEYKG-------------KRELMSPRVGKKAIDFVIEKS 142 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV--- 231 RK + + G GEPL F +K+ + A + R T++T+G + N + Sbjct: 143 GPRKNIEVDLFG-GEPLMAFSTIKEIVEYAKEQEEKHNKIIRFTMTTNGTLLNQEIMEYL 201 Query: 232 -GEEIGVMLAISLHAV-SNDLR---------NILVPINRKYPLEMLIDACRHYPGLSNAR 280 ++L+I ++++R + ++P +K + + D + Y Sbjct: 202 DKNMGNIVLSIDGRKEINDNVRVRVDGSGSYDSILPKIKK--MVEMRDETKQYYARGTFT 259 Query: 281 RIT---FEYVMLKGINDSPR 297 R FE VM ND Sbjct: 260 RENLDFFEDVMHMANNDFDE 279 >gi|118444426|ref|YP_877912.1| Heme biosynthesis [Clostridium novyi NT] gi|118134882|gb|ABK61926.1| Heme biosynthesis [Clostridium novyi NT] Length = 431 Score = 41.0 bits (95), Expect = 0.29, Method: Composition-based stats. Identities = 35/196 (17%), Positives = 73/196 (37%), Gaps = 21/196 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC++ C+L C +C+ K AR ++ G + I+ ++ S Sbjct: 71 ALCLNVTHDCNLRCKYCFADEGKYHG-------------ARKVMSPEVGKKAIDFVIAHS 117 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV--- 231 RK + + G GEPL +K+ ++ A + + R T++T+ + N + Sbjct: 118 GPRKNIEVDLFG-GEPLIAIKEIKEIIAYAREQEKIHNKVIRFTMTTNALLLNDEIMEYM 176 Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVML 289 E ++L+I ND N + +N + ++ + + + Sbjct: 177 DKEMGNIVLSIDGRKEVND--NTRIRVNGSGTYDAILPKIKEMVDKRDKSKQYYVRGTFT 234 Query: 290 KGINDSPRDALNLIKI 305 + D D +L + Sbjct: 235 RDNTDFYYDVKHLADL 250 >gi|187778355|ref|ZP_02994828.1| hypothetical protein CLOSPO_01947 [Clostridium sporogenes ATCC 15579] gi|187771980|gb|EDU35782.1| hypothetical protein CLOSPO_01947 [Clostridium sporogenes ATCC 15579] Length = 446 Score = 41.0 bits (95), Expect = 0.30, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 76/200 (38%), Gaps = 33/200 (16%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC++ C+L C +C+ + R L+ G + I+ ++ S Sbjct: 87 ALCLNIAHDCNLRCKYCFADEGEYKG-------------KRELMSPQIGKKAIDFVIEKS 133 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVG 232 RK + + G GEPL F +K+ + A + R T++T+G I Sbjct: 134 GPRKNIEVDLFG-GEPLMAFSTIKEIVEYAKEQEKKHNKTIRFTMTTNGTLLNKEIMEYL 192 Query: 233 EEIGVMLAISL---HAVSNDLR---------NILVPINRKYPLEMLIDACRHYPGLSNAR 280 ++ + +S+ +++++R + ++P ++ + + D + Y Sbjct: 193 DKNMGNIVLSIDGRKEINDNVRVRVDGSGSYDSILPKIKE--MVEMRDKTKQYYARGTFT 250 Query: 281 RIT---FEYVMLKGINDSPR 297 R FE VM ND Sbjct: 251 RENLDFFEDVMHMANNDFDE 270 >gi|303246908|ref|ZP_07333184.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ] gi|302491615|gb|EFL51498.1| Radical SAM domain protein [Desulfovibrio fructosovorans JJ] Length = 335 Score = 41.0 bits (95), Expect = 0.30, Method: Composition-based stats. Identities = 44/267 (16%), Positives = 84/267 (31%), Gaps = 50/267 (18%) Query: 91 RFPARCIGGPV-EIETVYIPEKSRGTLC-VSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 RFP R V +ETV G C + GC+ C +C Sbjct: 33 RFPDRWCATAVSRVETVPFYHAWPGARCLIIGTAGCNFDCRYCSN--------------- 77 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP---LCNFDNVKKSLSIAS 205 +V+ E ++ + + ++ + EP L + + V + Sbjct: 78 AEVVKVDPAGLSDIMLELSPKALVDKARKHGCHAIVFSVNEPTVSLPSLEQVAREAR--- 134 Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRKY-PL 263 G+ +T V R+ E V +++ + ++Y + Sbjct: 135 -DAGMPMGCLTNGYAT---VAATERLAEVFSFVNVSLKGLSPD---------FCKEYLGV 181 Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN--LIKILKGIPAKINLIPFNPW 321 R+ L+ + +++G+ND DA+ L I + IP++ + Sbjct: 182 PDAGPILRNIEALARKVHVEVTTPVIEGVNDHELDAMAVFLAGIRRD-------IPWHAF 234 Query: 322 ---PGCEYLCSDQKDIVTFSECIKRSG 345 P + D I S I+ G Sbjct: 235 RLLPEYKMQREDYPSIEAISAKIEDCG 261 >gi|251780244|ref|ZP_04823164.1| glycyl-radical enzyme activating protein family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084559|gb|EES50449.1| glycyl-radical enzyme activating protein family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 313 Score = 41.0 bits (95), Expect = 0.30, Method: Composition-based stats. Identities = 10/100 (10%), Positives = 34/100 (34%), Gaps = 13/100 (13%) Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWP 322 ++++ + + R+ +++ ND+ +A+ + + INL+PF+ Sbjct: 208 DLILKNIKELINSNWQGRLVIRMPVIRDFNDTVENAMATADFMNDLGIYEINLLPFHRMG 267 Query: 323 GCEY------------LCSDQKDIVTFSECIKRSGYSSPI 350 ++ + + + + + I Sbjct: 268 DSKWTQLGKKYSYRNDEPTSEDKLDELQDIYLDRKIACYI 307 >gi|18310925|ref|NP_562859.1| astB/chuR-related protein [Clostridium perfringens str. 13] gi|18145607|dbj|BAB81649.1| astB/chuR-related protein [Clostridium perfringens str. 13] Length = 457 Score = 41.0 bits (95), Expect = 0.30, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 87/270 (32%), Gaps = 40/270 (14%) Query: 50 FQGMSDISQ-----EVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIE 104 + + + ++ + L + + E E L + E Sbjct: 31 YNMIDNDNKLSSKESLIEKLKDKYPVEEIEEAYED--------LLQLVEEDALYSGDLYE 82 Query: 105 TVYIPEK----SRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160 V LC++ C+L C +C+ + R + Sbjct: 83 EVAKESDKAPSYIKALCLNVVHDCNLRCKYCFADEGEYKGC-------------RKPMSA 129 Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR-RITL 219 G + I+ ++ S G K + + G GEPL FD +K+ + G K R T+ Sbjct: 130 EVGKKAIDFVLANSGGIKNIEVDLFG-GEPLMVFDTIKEIIDY-GKKRGQEVGKNVRFTM 187 Query: 220 STSGFVPNIARV----GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275 +T+ + N R+ ++L+I ND I V + Y + ++ + Sbjct: 188 TTNATLLNDERIDYIDKNIGNIILSIDGRKEVNDAVRIRVDGSGSY--DRILPNIKKMVE 245 Query: 276 LSNARRITFEYVMLKGIN-DSPRDALNLIK 304 + + + N D +D + L Sbjct: 246 KRDPSKQYYARGTFTRNNTDFFQDVMALAN 275 >gi|69248399|ref|ZP_00604735.1| Formate acetyltransferase activating enzyme [Enterococcus faecium DO] gi|257878034|ref|ZP_05657687.1| formate acetyltransferase activating enzyme [Enterococcus faecium 1,230,933] gi|257881180|ref|ZP_05660833.1| formate acetyltransferase activating enzyme [Enterococcus faecium 1,231,502] gi|257884843|ref|ZP_05664496.1| formate acetyltransferase activating enzyme [Enterococcus faecium 1,231,501] gi|257889767|ref|ZP_05669420.1| formate acetyltransferase activating enzyme [Enterococcus faecium 1,231,410] gi|257892296|ref|ZP_05671949.1| formate acetyltransferase activating enzyme [Enterococcus faecium 1,231,408] gi|258616472|ref|ZP_05714242.1| pyruvate formate-lyase activating enzyme [Enterococcus faecium DO] gi|260559084|ref|ZP_05831270.1| formate acetyltransferase activating enzyme [Enterococcus faecium C68] gi|293563436|ref|ZP_06677885.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium E1162] gi|293568151|ref|ZP_06679487.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium E1071] gi|294622318|ref|ZP_06701361.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium U0317] gi|314938046|ref|ZP_07845356.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium TX0133a04] gi|314941968|ref|ZP_07848829.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium TX0133C] gi|314948779|ref|ZP_07852151.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium TX0082] gi|314951797|ref|ZP_07854836.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium TX0133A] gi|314991796|ref|ZP_07857254.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium TX0133B] gi|314995837|ref|ZP_07860924.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium TX0133a01] gi|68194435|gb|EAN08938.1| Formate acetyltransferase activating enzyme [Enterococcus faecium DO] gi|257812262|gb|EEV41020.1| formate acetyltransferase activating enzyme [Enterococcus faecium 1,230,933] gi|257816838|gb|EEV44166.1| formate acetyltransferase activating enzyme [Enterococcus faecium 1,231,502] gi|257820681|gb|EEV47829.1| formate acetyltransferase activating enzyme [Enterococcus faecium 1,231,501] gi|257826127|gb|EEV52753.1| formate acetyltransferase activating enzyme [Enterococcus faecium 1,231,410] gi|257828675|gb|EEV55282.1| formate acetyltransferase activating enzyme [Enterococcus faecium 1,231,408] gi|260074841|gb|EEW63157.1| formate acetyltransferase activating enzyme [Enterococcus faecium C68] gi|291589141|gb|EFF20953.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium E1071] gi|291598210|gb|EFF29308.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium U0317] gi|291604697|gb|EFF34182.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium E1162] gi|313589941|gb|EFR68786.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium TX0133a01] gi|313593607|gb|EFR72452.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium TX0133B] gi|313596076|gb|EFR74921.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium TX0133A] gi|313599220|gb|EFR78065.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium TX0133C] gi|313642621|gb|EFS07201.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium TX0133a04] gi|313644845|gb|EFS09425.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium TX0082] Length = 253 Score = 41.0 bits (95), Expect = 0.30, Method: Composition-based stats. Identities = 45/275 (16%), Positives = 91/275 (33%), Gaps = 56/275 (20%) Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEIL 148 + IG IET + V Q GC + C FC+ T + TA+E+L Sbjct: 1 MEEKTIGYVHSIETFGSVDGPGLRFVVFMQ-GCRMRCQFCHNPDTWNIGGGKEYTADELL 59 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 + R GD G I + G GEPL D + + A + Sbjct: 60 DKAERFRPYWGDKGG------------------ITVSG-GEPLLQIDFLIELFKKAKER- 99 Query: 209 GLSFSKRRITLSTSGFV-----PNIARVGEEIGVM--LAISLHAVSNDLRNILVPINRKY 261 K TL T G P +R E + L + + N+ L + Sbjct: 100 -----KMHTTLDTCGKPFTYEEPFFSRFQELMKYTDLLLFDIKHIDNEEHKKLT----HW 150 Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFN 319 E +++ ++ ++ + +V++ +D + L ++ + ++ ++P++ Sbjct: 151 DNENILEMAQYLSKINK--PVWIRHVLVPERSDYDEYLIRLDNFIQTLSNVDRVEILPYH 208 Query: 320 PWPGCEY------------LCSDQKDIVTFSECIK 342 ++ ++ + + Sbjct: 209 TMGKYKWETLGLKYPLEGIEPPTKERVENAKRLLH 243 >gi|330507855|ref|YP_004384283.1| hypothetical protein MCON_1878 [Methanosaeta concilii GP-6] gi|328928663|gb|AEB68465.1| conserved hypothetical protein [Methanosaeta concilii GP-6] Length = 308 Score = 41.0 bits (95), Expect = 0.30, Method: Composition-based stats. Identities = 30/189 (15%), Positives = 61/189 (32%), Gaps = 23/189 (12%) Query: 124 CSLTCSFCYTGTQ----KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 C+ C C+ + E+L +L + G V R+ Sbjct: 61 CNHLCLHCWRPIDDPIPGKEP-MEPAELLEGILRGQQRFISGYGGSSTTDPVRLEEAREP 119 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 ++ + MGEP + +K+ + + S+R +T + E L Sbjct: 120 KHMAISLMGEPTL-YPYLKEFIDLV--------SRRGMTSFLVSNATRPEVLAELRPTQL 170 Query: 240 AISLHAVSNDL-RNILVPINRKYP-LEMLIDACRHYPGLSNARRITFEYVMLKGINDS-- 295 +SL+A + R I P +P + ++ + + R +++G N Sbjct: 171 YLSLNAPDEERYRQICNPSKDLWPRILESLELLKE-----HRCRSVIRMTLVRGQNMEGL 225 Query: 296 PRDALNLIK 304 A + Sbjct: 226 DDYARLIGD 234 >gi|238922271|ref|YP_002935785.1| pyruvate formate lyase activating enzyme [Eubacterium eligens ATCC 27750] gi|238873943|gb|ACR73651.1| pyruvate formate lyase activating enzyme [Eubacterium eligens ATCC 27750] Length = 259 Score = 41.0 bits (95), Expect = 0.30, Method: Composition-based stats. Identities = 36/247 (14%), Positives = 79/247 (31%), Gaps = 51/247 (20%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C +C+ + + + + + I Sbjct: 37 GCHMRCRYCHNP---------------ETWKEEGGTLETAQEVFDKAYRYRNYWKNGGGI 81 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--------FVPNIARVGEE 234 + G GE L V + IA + TL TSG ++ R+ Sbjct: 82 TVSG-GEALLQMGFVTELFEIAKKN------GVHTTLDTSGNPFKMEPEYLEKFDRLMAV 134 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 + L + + +++D L K L+ Y N + +V++ G+ D Sbjct: 135 TDLFL-LDIKEINDDKHKDLTGWTNKNILD-----LAKYLSDHNKD-MWIRHVLVPGVTD 187 Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWP-------GCEYL-----CSDQKDIVTFSEC 340 + D L + G+ + ++P++ G Y D++ + ++ Sbjct: 188 AQEDLEQLRDFVAGLKTVKRFEVLPYHTLGVFKWEELGIPYTLSDVMPPDKEQVARANDI 247 Query: 341 IKRSGYS 347 ++ + Y+ Sbjct: 248 LRTAEYT 254 >gi|255525040|ref|ZP_05391986.1| pyruvate formate-lyase activating enzyme [Clostridium carboxidivorans P7] gi|296187392|ref|ZP_06855787.1| pyruvate formate-lyase 1-activating enzyme [Clostridium carboxidivorans P7] gi|255511296|gb|EET87590.1| pyruvate formate-lyase activating enzyme [Clostridium carboxidivorans P7] gi|296047914|gb|EFG87353.1| pyruvate formate-lyase 1-activating enzyme [Clostridium carboxidivorans P7] Length = 264 Score = 41.0 bits (95), Expect = 0.31, Method: Composition-based stats. Identities = 46/277 (16%), Positives = 96/277 (34%), Gaps = 54/277 (19%) Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQ 150 + +G IE+ + + + GC + C FC+ T T +E+L Q Sbjct: 14 DKNLGKIHSIESFGSVDGPGIRFVIFLK-GCHMRCQFCHNPDTWDMDGAETKTVDELLSQ 72 Query: 151 VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGL 210 L + +K I + G GEPL D + K + A Sbjct: 73 AL------------------KYKTYWKKGGGITVSG-GEPLLQIDFLIKFFTKAKAK--- 110 Query: 211 SFSKRRITLSTSGFV-----PNIARVGEEIGVM-LAISLHAVSNDLRNILVPINRKYPLE 264 +TL TSG P + E + V L + ++ + ++ + Sbjct: 111 ---GVHVTLDTSGNPFTREQPFFGKFNELMKVTDLVMLDIKQIDEAEHKILTG---WSNS 164 Query: 265 MLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFN--- 319 ++D R+ ++ + +V++ G +D+ L + +K + ++ ++P++ Sbjct: 165 NILDMARYLSEINK--PVWIRHVLVPGGSDNDDQLTKLDEFIKTLKNVDRVEVLPYHILG 222 Query: 320 ----PWPGCEY-----LCSDQKDIVTFSECIKRSGYS 347 G +Y + I + + S Y+ Sbjct: 223 TFKWEQLGIDYPLKGVEPPTKGRIENARKLLHTSEYN 259 >gi|320102928|ref|YP_004178519.1| pyruvate formate-lyase activating enzyme [Isosphaera pallida ATCC 43644] gi|319750210|gb|ADV61970.1| pyruvate formate-lyase activating enzyme [Isosphaera pallida ATCC 43644] Length = 273 Score = 41.0 bits (95), Expect = 0.31, Method: Composition-based stats. Identities = 49/281 (17%), Positives = 86/281 (30%), Gaps = 57/281 (20%) Query: 90 LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN---LTAEE 146 L +G IE + + C GC L C +C+ RN + EE Sbjct: 27 LLTAQGRLGRVHSIEWGSMVDGPGLR-CAIFLSGCLLRCQYCHNPDTWAPRNGRLVEVEE 85 Query: 147 ILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD 206 ++ ++ ++ G V + GEPL D + I Sbjct: 86 VIDRLRPYLRMMSLGHGG------------------VTLSGGEPLY-QDRF--AFEIFKA 124 Query: 207 SMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA-----VSNDLRNILVPINRKY 261 GL L TSG++ R EE ++ + L R L P Sbjct: 125 CRGLGL---HTALDTSGYLG--DRASEEDLDLVDLVLLDLKSGDPDLYQRLTLKP----- 174 Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINL--IPFN 319 LE + R ++ + +V++ G+ D + L + P L +PF+ Sbjct: 175 -LEPTLRFARRLAARNH--PVWIRFVLVPGLTDPVDNLEALANHVAAWPNVERLEVLPFH 231 Query: 320 PWPGCEYLC------------SDQKDIVTFSECIKRSGYSS 348 +Y + + E ++ G + Sbjct: 232 QMGQYKYEAMGIPYPLANHPEATADQVRQVVEWLRSRGVPA 272 >gi|207108372|ref|ZP_03242534.1| hypothetical protein HpylH_01830 [Helicobacter pylori HPKX_438_CA4C1] Length = 28 Score = 41.0 bits (95), Expect = 0.31, Method: Composition-based stats. Identities = 11/22 (50%), Positives = 13/22 (59%) Query: 348 SPIRTPRGLDILAACGQLKSLS 369 IR + LDI AACGQL+ Sbjct: 2 CTIRESKALDIEAACGQLREKK 23 >gi|254444254|ref|ZP_05057730.1| nitrogenase cofactor biosynthesis protein NifB [Verrucomicrobiae bacterium DG1235] gi|198258562|gb|EDY82870.1| nitrogenase cofactor biosynthesis protein NifB [Verrucomicrobiae bacterium DG1235] Length = 438 Score = 41.0 bits (95), Expect = 0.31, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 66/198 (33%), Gaps = 25/198 (12%) Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221 PG + I I+ + + G G+P N + ++ + F + LST Sbjct: 69 PGQALVYLEKIMESREDIAVVGIAGPGDPFANPNETMETFRLVRAR----FPNMILCLST 124 Query: 222 SGF---VPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYP------------LEML 266 +G + + + I+++ ++ + R +E Sbjct: 125 NGLGLTEEYVKELAALQVSHVTITMNGTDPEIAGQVYAWARHDKRIFRHEKAGALMIEKQ 184 Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCE 325 + A R ++ +++ G+ND + K + + A I N IP P Sbjct: 185 LQAIRWIKQYGMIAKVN--SIIVPGVND--EHLHEIAKTVSELGADIMNCIPLLPTKDTV 240 Query: 326 YLC-SDQKDIVTFSECIK 342 + + + F+ IK Sbjct: 241 FENHPEPDSKMRFATQIK 258 >gi|310777957|ref|YP_003966290.1| pyruvate formate-lyase activating enzyme [Ilyobacter polytropus DSM 2926] gi|309747280|gb|ADO81942.1| pyruvate formate-lyase activating enzyme [Ilyobacter polytropus DSM 2926] Length = 244 Score = 41.0 bits (95), Expect = 0.32, Method: Composition-based stats. Identities = 30/245 (12%), Positives = 75/245 (30%), Gaps = 46/245 (18%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C +C+ + ++ + + Sbjct: 30 GCPLRCKYCHNPD---------------TWHMPDASYEEDANYIVKEISRYKPFFRNGGG 74 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF--VPNIARVGEEIGVMLA 240 + + GEP + K+ + ++ + TSG + E + ++L Sbjct: 75 MTLSGGEPFMQAEFAKELFRLCKEND------INTAVDTSGIYLNDTVKEALEYVDLVL- 127 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 + + + + + K LE + R+ + + +V++ GI D Sbjct: 128 LDIKCIDPE----IYKDLTKVELEPTLKFARYLSDIKK--PVWIRHVLVPGITDREDLLE 181 Query: 301 NLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKRSGY 346 L + + K+ ++P++ ++ ++ + E ++ G Sbjct: 182 KLGDFIASLENVEKMEILPYHSLGEYKWEELGYEYELKGVEPPTKEAVEKAKEIFRKKG- 240 Query: 347 SSPIR 351 PIR Sbjct: 241 -VPIR 244 >gi|304316819|ref|YP_003851964.1| RNA modification enzyme, MiaB family [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778321|gb|ADL68880.1| RNA modification enzyme, MiaB family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 471 Score = 41.0 bits (95), Expect = 0.32, Method: Composition-based stats. Identities = 44/244 (18%), Positives = 87/244 (35%), Gaps = 35/244 (14%) Query: 72 YPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131 +PE++ E ++ D T +E + I V+ GC+ C++C Sbjct: 142 FPELLQESLNSDTTI------IDIWDDNKSIVEDIPIRRAEGLKAWVNIIYGCNNFCTYC 195 Query: 132 YTGT-QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI-SNIVMMGMGE 189 + ++ +IL ++ +SL + + G + S G + I + Sbjct: 196 IVPYVRGREKSREPHDILNEI---KSLANEGFKEITLLGQNVNSYGNDLPIKIDFADL-- 250 Query: 190 PLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV---GEEIGVMLAISLHAV 246 L + +D G+ RI TS ++ ++ L LH Sbjct: 251 -----------LYMINDIDGI----ERIRFMTSHPKDISDKLIFAMRDLD-KLCEHLHLP 294 Query: 247 SNDLRNILV-PINRKYPLEMLIDACRHYPGLSNARRITFEYVM-LKGINDSP-RDALNLI 303 N ++ +NRKY E ++ IT + ++ G D +D L+L+ Sbjct: 295 VQSGSNKILERMNRKYSRERYLEIINKLRDNIPGIAITTDIIVGFPGETDKDFQDTLDLV 354 Query: 304 KILK 307 K ++ Sbjct: 355 KEVR 358 >gi|308233496|ref|ZP_07664233.1| pyruvate formate-lyase activating enzyme [Atopobium vaginae DSM 15829] gi|328943744|ref|ZP_08241209.1| pyruvate formate-lyase-activating enzyme [Atopobium vaginae DSM 15829] gi|327491713|gb|EGF23487.1| pyruvate formate-lyase-activating enzyme [Atopobium vaginae DSM 15829] Length = 257 Score = 41.0 bits (95), Expect = 0.32, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 33/88 (37%), Gaps = 13/88 (14%) Query: 274 PGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEYL----- 327 ++ I ++ N+S DA ++ K + K+ L+PF+ + +Y Sbjct: 168 YAFTHNTHIVLRIPVIPDFNNSLEDAAQFGQLFKKMHVNKVQLLPFHQFGENKYKLLKRV 227 Query: 328 ------CS-DQKDIVTFSECIKRSGYSS 348 +D+ + + + + G + Sbjct: 228 YQMGKYKPLHPEDLYDYRDVLCKQGINC 255 >gi|327403999|ref|YP_004344837.1| MiaB-like tRNA modifying enzyme [Fluviicola taffensis DSM 16823] gi|327319507|gb|AEA43999.1| MiaB-like tRNA modifying enzyme [Fluviicola taffensis DSM 16823] Length = 448 Score = 41.0 bits (95), Expect = 0.33, Method: Composition-based stats. Identities = 45/213 (21%), Positives = 69/213 (32%), Gaps = 26/213 (12%) Query: 105 TVYIP---EKSRGTLCVSSQVGCSLTCSFCYTGTQ-KLVRNLTAEEILLQVLLARSLLGD 160 T +IP R + Q GC C+FC RN + I VL AR + Sbjct: 147 TSFIPSHSMGDRTRSFLKIQDGCDYFCTFCTIPLARGKSRNAS---ISDTVLEARKIAET 203 Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLS 220 + G+ I G+ G GE NF + K+L + S L Sbjct: 204 NIKEVVLTGVNIGDFGQ--------GEGE---NFFELVKALDEVNGIDRYRISSIEPNL- 251 Query: 221 TSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPIN-RKYPLEMLIDACRHYPGLSNA 279 I + E H N L+ RKY E+ ++ +H L Sbjct: 252 ---LSDEIIQFTLENSKRFVPHFHIPLQSGSNRLLKAMRRKYLRELYVERVQHIKKLRPD 308 Query: 280 RRITFEYVM-LKGINDSPRDALNLIKILKGIPA 311 I + ++ G D + + + LK + Sbjct: 309 CAIGVDVIVGFPGETD--EEFIETMDFLKDLDV 339 >gi|323703435|ref|ZP_08115083.1| Radical SAM domain protein [Desulfotomaculum nigrificans DSM 574] gi|323531616|gb|EGB21507.1| Radical SAM domain protein [Desulfotomaculum nigrificans DSM 574] Length = 280 Score = 41.0 bits (95), Expect = 0.33, Method: Composition-based stats. Identities = 39/242 (16%), Positives = 86/242 (35%), Gaps = 50/242 (20%) Query: 124 CSLTCSFCYTGTQ--KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 C++ C++C R E+L P + + +V+ +S Sbjct: 18 CNIACNYCNRKYDCVNESRPGVTSEVL------------TPVSAEQKFIVVKEKIPNLSV 65 Query: 182 IVMMGMGEPLCNFDNVKKSLSIA---SDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238 + + G G+ L N++N +++ + M S + L + P I +G + Sbjct: 66 VGIAGPGDALANWENTCEAIERIKQSNPEMIFCLSTNGLLL--PHYAPEIVELGIK---H 120 Query: 239 LAISLHAVSNDLRNILVPI----NRKYP--------LEMLIDACRHYPGLSNARRITFEY 286 + ++++ ++ D + +KY LE + ++ ++ Sbjct: 121 VTVTMNTLNPDTGAKIYRHVHYQGKKYEGTVGAGILLENQLTGIQYLAHQGVLVKVNI-- 178 Query: 287 VMLKGINDSP-----RDALNLIKILKGIPAKINLIPFNPWPGCEY---LCSDQKDIVTFS 338 VM+K INDS + A L + N++P P G + + K++ Sbjct: 179 VMIKDINDSEIPAVVKKAKQLGAFM------TNIMPLIPAEGSVFANLPPTSIKELNQMR 232 Query: 339 EC 340 + Sbjct: 233 DR 234 >gi|307288839|ref|ZP_07568817.1| radical SAM domain protein [Enterococcus faecalis TX0109] gi|306500308|gb|EFM69647.1| radical SAM domain protein [Enterococcus faecalis TX0109] gi|315166214|gb|EFU10231.1| radical SAM domain protein [Enterococcus faecalis TX1302] Length = 465 Score = 41.0 bits (95), Expect = 0.33, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 59/176 (33%), Gaps = 22/176 (12%) Query: 89 LLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 LL+ + V +E V P + L S C+L C++C+ G + +++ Sbjct: 51 LLKQFKKENSSDVAVEKV--PGRGTVALTFMSARTCNLGCTYCFAG-EGEYGSVSD---- 103 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD-- 206 + + + + I ++ G GEP+ NF +K + A D Sbjct: 104 ------KPAFFTKENYMNAVRFALENYSDGIKSMCFFG-GEPMINFREIKSFVKEAQDFF 156 Query: 207 -SMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKY 261 + F I + G ++ + + SL L + R Y Sbjct: 157 KKNDMEFPPTSICTNLVGISSKAIEFLKDNNIFIVTSLDGP-----KKLNDLARIY 207 >gi|20089058|ref|NP_615133.1| hypothetical protein MA0160 [Methanosarcina acetivorans C2A] gi|19913917|gb|AAM03613.1| conserved hypothetical protein [Methanosarcina acetivorans C2A] Length = 326 Score = 41.0 bits (95), Expect = 0.33, Method: Composition-based stats. Identities = 26/186 (13%), Positives = 63/186 (33%), Gaps = 21/186 (11%) Query: 137 KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN--------IVMMGMG 188 +N + I Q+ S LG ++ S + + + G Sbjct: 28 GSKKNCNYDCIYCQLGHVESKLGSPEDVKEPVTSKEVSQSFRNFHKDIEGLDYVTFSGTC 87 Query: 189 EPLCN--FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAV 246 EP N + +++ +G IT S+ ++ + + +++A + Sbjct: 88 EPSLNLSLGEMIRAVR----EIG-GIPVCVITNSSLVGREDVRKNLAQADLIVATLVSGN 142 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG-----INDSPRDALN 301 N R + L+ +I+ R +++ E + L+ +N + + + Sbjct: 143 ENTWR-KIHRPASGIALQEIIEGLRELAKGGAGKKLALEVMFLESEAGKPLNSTDEEVES 201 Query: 302 LIKILK 307 LI ++ Sbjct: 202 LIATIR 207 >gi|224548824|dbj|BAH24164.1| NifB protein [Paenibacillus fujiensis] Length = 458 Score = 41.0 bits (95), Expect = 0.34, Method: Composition-based stats. Identities = 40/248 (16%), Positives = 86/248 (34%), Gaps = 50/248 (20%) Query: 124 CSLTCSFCYTGTQKLVR-----NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 C++ C++C R N + ++ +VL P + + + + + Sbjct: 42 CNIQCNYC-------NRKFDCVNESRPGVVSEVLT--------PEQAERKVKGVAAQLMQ 86 Query: 179 ISNIVMMGMGEPLCNFDNVKK-SLSIASD--SMGLSFSKRRITLSTSGFVPNIARVGEEI 235 +S + + G G+PL N D + + S +TL +I R+ E Sbjct: 87 LSVVGIAGPGDPLANADKTFDTFARVKKHVPDVMTCLSTNGLTLY-----RHIDRIVELG 141 Query: 236 GVMLAISLHAVSNDLRNILVPI------------NRKYPLEMLIDACRHYPGLSNARRIT 283 + I+++A+ D+ + P + + + Sbjct: 142 IGHVTITINAIDPDVGKEIYPWVFDEGVRYEGREAAALLISRQLQEVEELAKR--GILVK 199 Query: 284 FEYVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEY-----LCSDQKDIVTF 337 +M+ G+ND + + + K +K + A + N+ P PG +Y K++ Sbjct: 200 VNSIMIPGVND--KHLVEVSKKVKELGATLHNVTPLIIAPGSQYEKDGRKAPRPKELNQL 257 Query: 338 SECIKRSG 345 E + G Sbjct: 258 QEQLSEGG 265 >gi|319935770|ref|ZP_08010199.1| pyruvate formate-lyase activating enzyme [Coprobacillus sp. 29_1] gi|319809205|gb|EFW05654.1| pyruvate formate-lyase activating enzyme [Coprobacillus sp. 29_1] Length = 254 Score = 41.0 bits (95), Expect = 0.34, Method: Composition-based stats. Identities = 32/211 (15%), Positives = 69/211 (32%), Gaps = 31/211 (14%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C FC+ ++ P + M S + I Sbjct: 30 GCPLRCQFCHNPD---------------TWGSQKYQEMTPEAALKQAMKYKSYWGEKGGI 74 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSM---GLSFSKRRITLSTSGFVPNIARVGEEIGVM- 238 + G GEPL + + + +A + S T S P ++ E + Sbjct: 75 TISG-GEPLMQMEFILELFKLAKKENINTCIDTSGGCFTRS----EPFFSQFQELMKYTD 129 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 L + V N+ ++ L+ + + + + +V++ ND D Sbjct: 130 LLLVDIKVMNEEKHKLLTGKGNQNILDMTRYLSEI-----GKPVWIRHVLVPERNDYDED 184 Query: 299 ALNLIKILKGIPA--KINLIPFNPWPGCEYL 327 L + +K + ++ ++P++ ++ Sbjct: 185 LEELNEFIKSLKNVQRVEVLPYHTLGTFKWK 215 >gi|153955689|ref|YP_001396454.1| NifK/nifB [Clostridium kluyveri DSM 555] gi|219856063|ref|YP_002473185.1| hypothetical protein CKR_2720 [Clostridium kluyveri NBRC 12016] gi|146348547|gb|EDK35083.1| NifK/nifB [Clostridium kluyveri DSM 555] gi|219569787|dbj|BAH07771.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 890 Score = 41.0 bits (95), Expect = 0.34, Method: Composition-based stats. Identities = 40/180 (22%), Positives = 68/180 (37%), Gaps = 21/180 (11%) Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221 P + ++ ++ I + G G+ L NF VKKSL + K LST Sbjct: 525 PEEALEKFKLVKGKIENLTVIGIAGPGDALANFPKVKKSLELIRKED----PKITFCLST 580 Query: 222 SGFVPNIA--RVGEEIGVMLAISLHAVSNDLRNILVP----INRKYPLEMLIDAC----- 270 +G + ++ E + ++++AV + ++ + KY E Sbjct: 581 NGLMLPFYANQLIELGVSHVTVTINAVDEKIGALIYKEVNYLEHKYKGEEGARILLNNQL 640 Query: 271 --RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEYL 327 Y S VMLKGINDS ++K +K A + N++ P G + Sbjct: 641 SGLEYL-CSKGVVCKVNIVMLKGINDS--HIKEVVKKVKDCGAYMTNIMQMIPVQGSGFE 697 >gi|301168830|emb|CBW28421.1| pyruvate formate lyase activating enzyme 1 [Haemophilus influenzae 10810] Length = 246 Score = 41.0 bits (95), Expect = 0.35, Method: Composition-based stats. Identities = 35/248 (14%), Positives = 83/248 (33%), Gaps = 54/248 (21%) Query: 123 GCSLTCSFCYTGT-----QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C+ ++ E+++ +V+ R + G G Sbjct: 29 GCLMRCKYCHNRDTWDLEGGKE--ISVEDLMKEVVTYRHFMNATGGGVTASGGEAVLQAE 86 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 + + ++ G++ L T+GFV + + +E+ Sbjct: 87 FVRD---------------WFRACK----EEGIN-----TCLDTNGFVRHYDHIIDELLD 122 Query: 238 MLAISLHAV---SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 + + L + ++ + L+ + K LE Y N YV++ G D Sbjct: 123 VTDLVLLDLKELNDQVHQNLIGVPNKRTLE-----FAKYLQKRNQH-TWIRYVVVPGYTD 176 Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSEC 340 S D L + ++G+ K+ L+P++ ++ ++ + Sbjct: 177 SDHDVHLLGQFIEGMTNIEKVELLPYHRLGAHKWKTLGLDYELENVLPPTKESLEHIKTI 236 Query: 341 IKRSGYSS 348 ++ G+ Sbjct: 237 LEGYGHIV 244 >gi|302384753|ref|YP_003820575.1| pyruvate formate-lyase activating enzyme [Clostridium saccharolyticum WM1] gi|302195381|gb|ADL02952.1| pyruvate formate-lyase activating enzyme [Clostridium saccharolyticum WM1] Length = 257 Score = 41.0 bits (95), Expect = 0.35, Method: Composition-based stats. Identities = 38/214 (17%), Positives = 74/214 (34%), Gaps = 37/214 (17%) Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC + C +C+ T +TAEE+L Q +R+ Sbjct: 27 GCPMRCQYCHNPDTWKMAGGTPMTAEELLKQFESSRNFYRGGGITATG------------ 74 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSM---GLSFSKRRITLSTSGFVPNIARVGEEIG 236 GEPL D V + A L S + ++ I R+ E Sbjct: 75 --------GEPLMQLDFVTELFEAAKKKDIHTCLDTSGVMFHRNGPDYLNKIDRLLEHTD 126 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 ++ + + + + +L + E ++D R+ + +V++ I D Sbjct: 127 -LVMLDIKHMDDPKHKVLTGQSN----ENILDFARYLSQKE--IPVWIRHVVVPQITDQT 179 Query: 297 RDALNLIKI---LKGIPAKINLIPFNPWPGCEYL 327 D L + LK + A ++++P++ +Y Sbjct: 180 PDLYRLGRFIGELKNVKA-LDVLPYHDMGKVKYE 212 >gi|307353972|ref|YP_003895023.1| Radical SAM domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307157205|gb|ADN36585.1| Radical SAM domain protein [Methanoplanus petrolearius DSM 11571] Length = 362 Score = 40.6 bits (94), Expect = 0.36, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 50/134 (37%), Gaps = 26/134 (19%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR-KISNI 182 C+ C C+T G+ ED + V+P + + ++S + Sbjct: 37 CNARCVHCFTS--------------------ADNQGETMTLEDFQDFVVPRLKQCRVSRV 76 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 + G GEP N+ + + S++ S T +T I + E V + +S Sbjct: 77 TLTG-GEPFL-HPNIIDFVKLLSNAD---ISVGICTNATVITTDQIQALSHERNVHINVS 131 Query: 243 LHAVSNDLRNILVP 256 LH S++ + + Sbjct: 132 LHGFSSESHDKFMK 145 >gi|327399325|ref|YP_004340194.1| Radical SAM domain-containing protein [Hippea maritima DSM 10411] gi|327181954|gb|AEA34135.1| Radical SAM domain protein [Hippea maritima DSM 10411] Length = 319 Score = 40.6 bits (94), Expect = 0.36, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 64/187 (34%), Gaps = 25/187 (13%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 CS C +C G T + L + E KI + Sbjct: 27 CSYRCIYCEVGK-------TTD------LSIERKSFFEVELIEKEFKDNIGKLGKIDFVT 73 Query: 184 MMGMGEPLCNFD--NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 G GEP N D + + G + +T + + ++ R + + + I Sbjct: 74 FSGSGEPTLNKDIGRLIDFVK------GFGYRTAVLTNGSLLWREDVKR--DLLRADIVI 125 Query: 242 -SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 SL A D + + L +I + S + ++ E + ++G+NDS R+ Sbjct: 126 PSLDAADEDSFKKINRPHPSLSLTKIIHGIADF-NHSFSGQMWLEILFVEGVNDSKRNVK 184 Query: 301 NLIKILK 307 LI +K Sbjct: 185 ALIDAIK 191 >gi|110800078|ref|YP_696622.1| radical SAM domain-containing protein [Clostridium perfringens ATCC 13124] gi|110674725|gb|ABG83712.1| radical SAM domain protein [Clostridium perfringens ATCC 13124] Length = 457 Score = 40.6 bits (94), Expect = 0.36, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 87/270 (32%), Gaps = 40/270 (14%) Query: 50 FQGMSDISQ-----EVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIE 104 + + + ++ + L + + + E L + E Sbjct: 31 YNMIDNDNKLSSKESLIEKLKDKYPVEEIKEAYED--------LLQLVEEDALYSGDLYE 82 Query: 105 TVYIPEK----SRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGD 160 V LC++ C+L C +C+ + R + Sbjct: 83 EVAKESDKAPSYIKALCLNVVHDCNLRCKYCFADEGEYKGC-------------RKPMSA 129 Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR-RITL 219 G + I+ ++ S G K + + G GEPL FD +K+ + G K R T+ Sbjct: 130 EVGKKAIDFVLANSGGIKNIEVDLFG-GEPLMVFDTIKEIIDY-GKKRGQEVGKNVRFTM 187 Query: 220 STSGFVPNIARV----GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275 +T+ + N R+ ++L+I ND I V + Y + ++ + Sbjct: 188 TTNATLLNDERIDYIDKNIGNIILSIDGRKEVNDAVRIRVDGSGSY--DRILPNIKKMVE 245 Query: 276 LSNARRITFEYVMLKGIN-DSPRDALNLIK 304 + + + N D +D + L Sbjct: 246 KRDPSKQYYARGTFTRNNTDFFQDVMALAN 275 >gi|307707088|ref|ZP_07643885.1| hypothetical protein ydeM [Streptococcus mitis SK321] gi|307617614|gb|EFN96784.1| hypothetical protein ydeM [Streptococcus mitis SK321] Length = 423 Score = 40.6 bits (94), Expect = 0.36, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 62/186 (33%), Gaps = 19/186 (10%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 I + I E +L + + + C+LTCS+C+ + L++E D Sbjct: 53 IHSKRIVEGDELSLYIVTTMSCNLTCSYCFENDKDRKPFLSSE-------------YDGK 99 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 + + K +I G GEPL NF ++ + + + S IT T Sbjct: 100 KIVNFILDELNFKKYKSLDICFTG-GEPLYNFQFIRNLCETLDEKLAIPISYTLITNGTI 158 Query: 223 GFVPNIARVGEE----IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN 278 F I + I V H + + N L + L Y LS Sbjct: 159 -FTNKIMSFLDCHNFAIQVSFDGDEHYHNLERCNRLGKGTYHRIINNLSVMLEKYKNLSI 217 Query: 279 ARRITF 284 R+ Sbjct: 218 QARVNI 223 >gi|224012289|ref|XP_002294797.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|224013668|ref|XP_002296498.1| pyruvate formate-lyase [Thalassiosira pseudonana CCMP1335] gi|220968850|gb|EED87194.1| pyruvate formate-lyase [Thalassiosira pseudonana CCMP1335] gi|220969236|gb|EED87577.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 247 Score = 40.6 bits (94), Expect = 0.36, Method: Composition-based stats. Identities = 40/211 (18%), Positives = 74/211 (35%), Gaps = 23/211 (10%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GCS C +C N A+ I+ L + D+ + + Sbjct: 25 GCSKRCIYCS--------NPDAQCIVD-PLKFPEVAISDEEVIDVLKRYELFLSPNSGGV 75 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF-VPNIAR--VGEEIGVML 239 G G+PL D V ++ + +G S + T+G+ P I + VML Sbjct: 76 TFSG-GDPLLQPDFV-NAVFEKAKDIG---SGLTTCIDTAGYGSPKIWDKCLPNTDYVML 130 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 I + + K+ E D RH +++ +V+LK + D+ + Sbjct: 131 CIKG---MDLKLASFISGVSKFQNECARDFARHIRDHYKNIKLSIRWVLLKDMTDTDEEL 187 Query: 300 LNLIKILKGI-PA--KINLIPFNPWPGCEYL 327 L K + P + ++P++ +Y Sbjct: 188 EALAAFAKELSPVFTHVEVLPYHSLGVDKYR 218 >gi|146281690|ref|YP_001171843.1| FeMo cofactor biosynthesis protein NifB [Pseudomonas stutzeri A1501] gi|145569895|gb|ABP79001.1| FeMo cofactor biosynthesis protein NifB [Pseudomonas stutzeri A1501] Length = 447 Score = 40.6 bits (94), Expect = 0.36, Method: Composition-based stats. Identities = 30/210 (14%), Positives = 72/210 (34%), Gaps = 33/210 (15%) Query: 124 CSLTCSFCYTGTQ--KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 C++ C +C R E+L P + + + +++ Sbjct: 9 CNIQCHYCNRKYDCANESRPGVVSELLE------------PVQAVKKVKAVAATIPQMTV 56 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVML 239 + + G G+PL N ++ + S+ ++ +ST+G + + + + Sbjct: 57 LGIAGPGDPLANPQRTFETFRMLSEQA----PDIKLCVSTNGLALPDCVDELAKHNIDHV 112 Query: 240 AISLHAVSNDLRNILVPI----NRKYPLEMLIDACRHYPGL------SNARRITFEYVML 289 I+++ V D+ + P N++ + V++ Sbjct: 113 TITINCVDPDIGAEIYPWIYWNNKRIRGRKAAKILIERQQKGLEMLVERGILVKVNSVLI 172 Query: 290 KGINDSPRDALNLIKILKGIPAKI-NLIPF 318 G+ND + +I+K A + N++P Sbjct: 173 PGVND--EHLKEVSRIVKAKGAFLHNVMPL 200 >gi|327479938|gb|AEA83248.1| FeMo cofactor biosynthesis protein NifB [Pseudomonas stutzeri DSM 4166] Length = 504 Score = 40.6 bits (94), Expect = 0.37, Method: Composition-based stats. Identities = 31/212 (14%), Positives = 72/212 (33%), Gaps = 37/212 (17%) Query: 124 CSLTCSFCYTGTQ--KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 C++ C +C R E+L P + + + +++ Sbjct: 67 CNIQCHYCNRKYDCANESRPGVVSELLD------------PVQAVKKVKAVAATIPQMTV 114 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVML 239 + + G G+PL N ++ + S+ ++ +ST+G + + + + Sbjct: 115 LGIAGPGDPLANPQRTFETFRMLSEQA----PDIKLCVSTNGLALPDCVDELAKHNIDHV 170 Query: 240 AISLHAVSNDLRNILVPI------------NRKYPLEMLIDACRHYPGLSNARRITFEYV 287 I+++ V D+ + P K +E + V Sbjct: 171 TITINCVDPDIGAEIYPWIYWNNKRIRGRKAAKILIERQQQGLEMLVER--GILVKVNSV 228 Query: 288 MLKGINDSPRDALNLIKILKGIPAKI-NLIPF 318 ++ G+ND + +I+K A + N++P Sbjct: 229 LIPGVND--EHLKEVSRIVKAKGAFLHNVMPL 258 >gi|293556778|ref|ZP_06675341.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium E1039] gi|291601110|gb|EFF31399.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium E1039] Length = 253 Score = 40.6 bits (94), Expect = 0.37, Method: Composition-based stats. Identities = 45/275 (16%), Positives = 91/275 (33%), Gaps = 56/275 (20%) Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEIL 148 + IG IET + V Q GC + C FC+ T + TA+E+L Sbjct: 1 MEEKTIGYVHSIETFGSVDGPGLRFVVFMQ-GCRMRCQFCHNPDTWNIGGGKEYTADELL 59 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 + R GD G I + G GEPL D + + A + Sbjct: 60 DKAERFRPYWGDKGG------------------ITVSG-GEPLLQIDFLIELFKKAKER- 99 Query: 209 GLSFSKRRITLSTSGFV-----PNIARVGEEIGVM--LAISLHAVSNDLRNILVPINRKY 261 K TL T G P +R E + L + + N+ L + Sbjct: 100 -----KMHTTLDTCGKPFTYEEPFFSRFQELMKYTDLLLFDIKHIDNEEHKKLT----HW 150 Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFN 319 E +++ ++ ++ + +V++ +D + L ++ + ++ ++P++ Sbjct: 151 DNENILEMAQYLSKINK--PVWIRHVLVPERSDYDEYLIRLDNFIQTLSNVDRVEILPYH 208 Query: 320 PWPGCEY------------LCSDQKDIVTFSECIK 342 ++ ++ + + Sbjct: 209 TMGKYKWEILGLKYPLEGIEPPTKERVENAKRLLH 243 >gi|319946489|ref|ZP_08020725.1| pyruvate formate-lyase activating enzyme [Streptococcus australis ATCC 700641] gi|319747320|gb|EFV99577.1| pyruvate formate-lyase activating enzyme [Streptococcus australis ATCC 700641] Length = 264 Score = 40.6 bits (94), Expect = 0.37, Method: Composition-based stats. Identities = 38/256 (14%), Positives = 87/256 (33%), Gaps = 66/256 (25%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + + R T +++L + L R G G Sbjct: 37 GCQMRCQYCHNPDTWAMETNMSRERTVDDVLEEALRYRGFWGQKGG-------------- 82 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF-----VPNIARVG 232 I + G GE L D + +++ + + L TL T + + Sbjct: 83 ----ITVSG-GEALLQIDFL---IALFTKAQELGI---HCTLDTCALPFRNTPRYLEKFD 131 Query: 233 EEIGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 + + V + + + ++++ + K I AC Y + + +V++ Sbjct: 132 KLMAVTDLVLLDIKEINDERHRFVTSQTNKN-----ILACAKYLS-DIGKPVWIRHVLVP 185 Query: 291 GINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDI-- 334 G+ D D + L K +K + K ++P++ ++ ++ + Sbjct: 186 GLTDRDDDLIELGKFVKTLKNVDKFEILPYHTMGEFKWRELGIPYSLEGVKPPTKERVQN 245 Query: 335 -------VTFSECIKR 343 ++ + +KR Sbjct: 246 AKNLMETESYQDYLKR 261 >gi|270292096|ref|ZP_06198311.1| pyruvate formate-lyase-activating enzyme [Streptococcus sp. M143] gi|270279624|gb|EFA25466.1| pyruvate formate-lyase-activating enzyme [Streptococcus sp. M143] Length = 264 Score = 40.6 bits (94), Expect = 0.37, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 68/214 (31%), Gaps = 35/214 (16%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C +C+ N + E + I Sbjct: 37 GCHMRCQYCH--------NPDTWAM-----ETNKSRERTVDDVLTEALRYRGFWGDKGGI 83 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEEIGV 237 + G GE L D + + A G+ TL T + + + + V Sbjct: 84 TVSG-GEALLQIDFLIAFFTKA-KEKGI-----HCTLDTCALPFRNTPRYLEKFNKLMAV 136 Query: 238 M--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 + + + ++ + I+ K I AC Y + + +V++ G+ D Sbjct: 137 TDLVLLDIKEINEEQHKIVTSQTNKN-----ILACARYLS-DIGKPVWIRHVLVPGLTDR 190 Query: 296 PRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327 D + L K +K + K ++P++ ++ Sbjct: 191 DEDLIELGKFVKTLKNVDKFEILPYHTMGEFKWR 224 >gi|87310727|ref|ZP_01092854.1| hypothetical protein DSM3645_06861 [Blastopirellula marina DSM 3645] gi|87286484|gb|EAQ78391.1| hypothetical protein DSM3645_06861 [Blastopirellula marina DSM 3645] Length = 432 Score = 40.6 bits (94), Expect = 0.37, Method: Composition-based stats. Identities = 38/179 (21%), Positives = 68/179 (37%), Gaps = 20/179 (11%) Query: 99 GPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVR----NLTAEEILLQV-LL 153 G +++ T R V Q GC L C+FC T VR + ++EEI+ +V L Sbjct: 117 GVIDVPTGLSTFGDRHRAFVKVQDGCLLRCTFCIIPT---VRPEMYSRSSEEIIAEVARL 173 Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213 A + + G R S M + ++ +SL+ + S Sbjct: 174 ADNGFREIVLTGIHLGHYGVDQNRGKSKAEWMRLA-------HLVRSLARLDGDFRIRMS 226 Query: 214 KRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSND-LRNILVPINRKYPLEMLIDACR 271 T T + + + + L IS+ + S+ LR + R++ + +D C+ Sbjct: 227 SIEATEVTRELIEVMGEFPDRVCPHLHISMQSGSDSVLRRMR----RRWGAQRFVDRCK 281 >gi|329768807|ref|ZP_08260238.1| pyruvate formate-lyase 1-activating enzyme [Gemella sanguinis M325] gi|328839580|gb|EGF89155.1| pyruvate formate-lyase 1-activating enzyme [Gemella sanguinis M325] Length = 263 Score = 40.6 bits (94), Expect = 0.38, Method: Composition-based stats. Identities = 32/242 (13%), Positives = 70/242 (28%), Gaps = 43/242 (17%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C +C+ + N A+ V+ L + + Sbjct: 41 GCMLRCKYCHNPDTWKMHNPDAK-----VVTVSQLTNEIVKYRNFFEASEGGG------- 88 Query: 183 VMMGMGEPLCNFDNV------KKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236 V + GE L D V K+L I + ++T I + Sbjct: 89 VTVSGGESLLQLDFVLELFRQLKALDINTCVDTCG----GFYVNTPTMNEKILELISLTD 144 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 + L + L + ++ L K ++ R N ++ +V++ D Sbjct: 145 LFL-MDLKHIDDEQHIKLTKRTNKN----ILQFARFLSD--NGAKMWIRHVLVPKWTDDD 197 Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIK 342 L + + ++ ++P++ +Y + I + ++ Sbjct: 198 YYLQKLRDFIDTLNGVERVEVLPYHDMAKFKYKELGYEYELNDINPPTKDRIKNAIKILR 257 Query: 343 RS 344 Sbjct: 258 AR 259 >gi|227486778|ref|ZP_03917094.1| radical SAM domain protein [Anaerococcus lactolyticus ATCC 51172] gi|227235248|gb|EEI85263.1| radical SAM domain protein [Anaerococcus lactolyticus ATCC 51172] Length = 469 Score = 40.6 bits (94), Expect = 0.38, Method: Composition-based stats. Identities = 38/218 (17%), Positives = 72/218 (33%), Gaps = 27/218 (12%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC++ C+ TC +C+ K + I + I+ ++ S Sbjct: 105 ALCLNVAHTCNFTCDYCFAKGGKYHG---PDAI----------MTKEVAKMAIDFLLENS 151 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASD-SMGLSFSKRRITLSTSGFV---PNIAR 230 +I G GEPL N + VK ++ A + TL+T+G + I Sbjct: 152 GRHHNLDIDFFG-GEPLMNLNVVKYTVDYARSKEEEFN-KHFNFTLTTNGLLLNDDTIDY 209 Query: 231 VGEEIG-VMLAISLH-AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVM 288 + E + V+L++ + R L ++++ + + Sbjct: 210 LNENMKNVVLSLDGRKDKHDHFRKTL---AGTGSFDLIVPKFQRLVEKRGDKGYYMRGTY 266 Query: 289 LKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY 326 D D + + G + +L P P EY Sbjct: 267 TANNLDFTEDIKTYLDL--GFK-RTSLEPVVGSPDNEY 301 >gi|148654967|ref|YP_001275172.1| radical SAM domain-containing protein [Roseiflexus sp. RS-1] gi|148567077|gb|ABQ89222.1| Radical SAM domain protein [Roseiflexus sp. RS-1] Length = 320 Score = 40.6 bits (94), Expect = 0.39, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 71/191 (37%), Gaps = 24/191 (12%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+ C +C R LT E R + ++E + +I + Sbjct: 27 CNWNCVYC---QLGRTRPLTNE--------RRVYVPLPVILNELEQALANRAPDEIDWVT 75 Query: 184 MMGMGEPLC--NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 ++G GEP + +++ + + + T+G + + V ++ A+ Sbjct: 76 IVGSGEPTLHSEIGELIRAIKRLT--------TLPLAVITNGALLYLPDVRADLCAADAV 127 Query: 242 --SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 +L A S + L + + E L++ + ++ E ++++G+NDS Sbjct: 128 MPTLSAGSASVYRALHRPHPETTFERLLEGLIAFRA-EYRGKLWVEVMLVRGVNDSEAAL 186 Query: 300 LNLIKILKGIP 310 +L L+ I Sbjct: 187 RDLASALQRIQ 197 >gi|212696379|ref|ZP_03304507.1| hypothetical protein ANHYDRO_00916 [Anaerococcus hydrogenalis DSM 7454] gi|325848830|ref|ZP_08170340.1| glycyl-radical enzyme activating protein family protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|212676657|gb|EEB36264.1| hypothetical protein ANHYDRO_00916 [Anaerococcus hydrogenalis DSM 7454] gi|325480474|gb|EGC83536.1| glycyl-radical enzyme activating protein family protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 320 Score = 40.6 bits (94), Expect = 0.39, Method: Composition-based stats. Identities = 45/303 (14%), Positives = 95/303 (31%), Gaps = 63/303 (20%) Query: 90 LRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLT------ 143 LR ++ E + +K+ C C + G K+ R++T Sbjct: 41 LRCKWCSNPEGLKSEYQVMIKKNACINCGQCVDVCPKKIHYMENGIHKVHRDITCIGCRR 100 Query: 144 --------AEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD 195 A EI+ + L+ +D M + E L Sbjct: 101 CEKNCLQKAIEIVGEDKTITELMDIVKEDKDFYMMSGGGLTVGGGEC--SAQAESL---K 155 Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILV 255 ++ ++ S G++ + T G++P + + I + I L + + Sbjct: 156 SLLEA----SHMDGIN-----TAIETCGYMP--RKSLDLIKDHVDIFLFDI-----KQMD 199 Query: 256 PINRKY----PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311 P+ KY E ++ R+ R+ +LKG+NDS + + ++ L+ Sbjct: 200 PVKHKYWTGVNNERILSNLRYLLESGKKVRVRMP--ILKGVNDSHEEIMAVVDFLEDFKC 257 Query: 312 KIN-----LIPFNPWPGCEYLC-----S-----------DQKDIVTFSECIKRSGYSSP- 349 N L+P++ + +Y + + + I + Sbjct: 258 FKNFDGIDLLPYHRYGVGKYEQLDMDYPMDSEMEGEFALSNEQLDAIQKWIDENKIEVNL 317 Query: 350 IRT 352 +R Sbjct: 318 VRH 320 >gi|297618450|ref|YP_003703609.1| radical SAM protein [Syntrophothermus lipocalidus DSM 12680] gi|297146287|gb|ADI03044.1| Radical SAM domain protein [Syntrophothermus lipocalidus DSM 12680] Length = 417 Score = 40.6 bits (94), Expect = 0.40, Method: Composition-based stats. Identities = 29/201 (14%), Positives = 68/201 (33%), Gaps = 23/201 (11%) Query: 110 EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169 R + + C+ C C + + + L P E+I Sbjct: 180 FYERWEGGIPTSPACNAACIGCISEQHG------------DAVSPQDRLDFVPEVEEIVE 227 Query: 170 MVIPSVGRKISNIVMMGMG---EPLCNFDNVKKSLSIASDSMGLSFSKRRITLST-SGFV 225 + + + R I+ G G EP N + + +++ G I L+T +GF Sbjct: 228 VGVHHLARAREAIISFGQGCEGEPSLNHEILAEAVKAMRKRTGRG----TINLNTNAGFT 283 Query: 226 PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFE 285 I ++ + + +++ + + + R + LE + ++ R+ ++ Sbjct: 284 EGIKKIVDAGLDAMRVTIFSCRPEN-YAVYHRPRDFQLEDVEESIRY--ARKKGVYVSLN 340 Query: 286 YVMLKGINDSPRDALNLIKIL 306 + G D + L+ + Sbjct: 341 LLTFPGFTDREDEIRTLLDFV 361 >gi|154249660|ref|YP_001410485.1| radical SAM domain-containing protein [Fervidobacterium nodosum Rt17-B1] gi|154153596|gb|ABS60828.1| Radical SAM domain protein [Fervidobacterium nodosum Rt17-B1] Length = 600 Score = 40.6 bits (94), Expect = 0.40, Method: Composition-based stats. Identities = 54/266 (20%), Positives = 96/266 (36%), Gaps = 59/266 (22%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKL-VRNLTAEEILLQVLLARSLLGDF 161 +E+V R + +S GC+ C FC+ G VR +A+EI+ V + L+ + Sbjct: 251 VESV----HDRAVIEISR--GCTRGCRFCHAGYVYRPVRERSADEIVKSV---KKLIENT 301 Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221 E + +IS I + E +S S ST Sbjct: 302 GYDEVSLLSLSSLDHSQISEIAEKLVEE---------------LKDKKVSIS----IPST 342 Query: 222 SGFVPNIA---RVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN 278 NI ++ E L + A S +R+ + N++ + +I+ + Sbjct: 343 RVDAFNIKIGEKIAEVRKTGLTFAPEAGSQKMRDAI---NKQISYDDIINTASE-AKRAG 398 Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIP--------AKIN-LIPFNPWPGCEYLCS 329 RRI Y M+ ++ D + +++K I A +N LIP P + Sbjct: 399 WRRIKL-YFMVGFPEETEEDIKEIGELIKDIKKLGFSDITASVNLLIP---KPHTAFQ-- 452 Query: 330 DQKDIVTFSECIKRSGYSSPIRTPRG 355 F++ ++ Y S +R G Sbjct: 453 -------FAK-LQEPEYMSMVRKILG 470 >gi|18978000|ref|NP_579357.1| molybdenum cofactor biosynthesis protein A [Pyrococcus furiosus DSM 3638] gi|18893779|gb|AAL81752.1| hypothetical protein PF1628 [Pyrococcus furiosus DSM 3638] Length = 419 Score = 40.6 bits (94), Expect = 0.40, Method: Composition-based stats. Identities = 34/207 (16%), Positives = 78/207 (37%), Gaps = 25/207 (12%) Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167 + ++ + V GC+L+C FC R + ++ L + D+ E Sbjct: 109 LIDRGTNLIQVRGSTGCNLSCIFCSVDEGPYSRTRNLDFVVDVDYLMKWF--DWVAKEKG 166 Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-- 225 +G+ + GEPL + + + + +S I++ ++G + Sbjct: 167 KGLEAH----------LDAQGEPLL-YPYIVELVQELRSHPHVSV----ISMQSNGVLLD 211 Query: 226 -PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF 284 + + E + +S+H++ + +L+ + Y L +++ + Sbjct: 212 EKLVEELAEAGLDRVNLSIHSLDPEKAKMLM-GMKNYDLNHVLEMAEALVNA--GIDVLI 268 Query: 285 EYVMLKGINDSPRDALNLIKILKGIPA 311 V++ GIND+ A I+ + I A Sbjct: 269 APVIIFGINDNE--AEAFIEFARRIGA 293 >gi|222152595|ref|YP_002561770.1| pyruvate formate-lyase activating enzyme [Streptococcus uberis 0140J] gi|222113406|emb|CAR41070.1| pyruvate formate-lyase activating enzyme [Streptococcus uberis 0140J] Length = 263 Score = 40.6 bits (94), Expect = 0.41, Method: Composition-based stats. Identities = 33/237 (13%), Positives = 70/237 (29%), Gaps = 51/237 (21%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C +C+ N E+ E + K I Sbjct: 35 GCKMRCQYCH--------NPDTWEM-----ETNKSRERTVSDVLKEALQYRHFWGKNGGI 81 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN--------IARVGEE 234 + G GE + D +L I + +G+ TL T GF + ++ Sbjct: 82 TVSG-GEAMLQID-FITALFIEAKKLGI-----HTTLDTCGFAYRPTPEYHQILDKLLAV 134 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 L + ++ ++ +V + + HY + +V++ G+ D Sbjct: 135 TD--LILLDLKEIDEEQHKIVTRQPNKNILLF----AHYLS-DKGIPVWIRHVLVPGLTD 187 Query: 295 SPRDALNLIKI---LKGIPAKINLIPFNPWPGCEY------------LCSDQKDIVT 336 L LK + K ++P++ ++ ++ + Sbjct: 188 IDEHLERLGDFVAKLKNVD-KFEILPYHTMGEFKWRELGIPYPLEGVKPPTKERVQN 243 >gi|20090379|ref|NP_616454.1| hypothetical protein MA1520 [Methanosarcina acetivorans C2A] gi|19915387|gb|AAM04934.1| conserved hypothetical protein [Methanosarcina acetivorans C2A] Length = 219 Score = 40.6 bits (94), Expect = 0.41, Method: Composition-based stats. Identities = 38/184 (20%), Positives = 60/184 (32%), Gaps = 25/184 (13%) Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167 I ++ L ++ CS C FC +RN V L P E+I Sbjct: 15 IYYEAHNNLYLNLTNRCSADCVFC-------IRNFADG-----VYGYDLRLSKEPTTEEI 62 Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227 + +V G+GEP FD V G+ R+ L T+G Sbjct: 63 LEALEGLDLSNYREVVFTGLGEPTLRFDVVLAVTRWLKS-RGI-----RVRLDTNGHAAL 116 Query: 228 IA-------RVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280 I + +++SL+A S + N L K ++D + Sbjct: 117 INPELDVVSELKNAGMDFISVSLNAESEEKYNKLCRPVHKNAYREILDFVKKAGEAGIPT 176 Query: 281 RITF 284 R+T Sbjct: 177 RVTV 180 >gi|161505162|ref|YP_001572274.1| hypothetical protein SARI_03299 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866509|gb|ABX23132.1| hypothetical protein SARI_03299 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 342 Score = 40.6 bits (94), Expect = 0.42, Method: Composition-based stats. Identities = 42/304 (13%), Positives = 88/304 (28%), Gaps = 69/304 (22%) Query: 13 MREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIY 72 +EL L + + ++R Q + ++ + + + + + Sbjct: 25 NPDELLHLL----QIEANEKLRAGQDARHLFALRV---------PRAFIARM-EKGNPDD 70 Query: 73 PEIVDEKISCDGTRKWLLRFPARCIGGPVE-----IETVYIPEKSRGTLCVSSQVGCSLT 127 P + S D P+E + + ++R L V GC++ Sbjct: 71 PLLRQVLTSQD-----EFIVAPGFSTDPLEEQHSVVPGLLHKYQNRALLLVKG--GCAVN 123 Query: 128 CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGM 187 C +C R+ E + + ++ I+ G Sbjct: 124 CRYC------FRRHFPYAE------------NQGNKRNWKVALEYIAAHPELDEIIFSG- 164 Query: 188 GEPL----CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 G+PL D + L L R+ + I + L Sbjct: 165 GDPLMAKDHELDWLLTQLEAIKHVKRLRI-HSRLPV--------------VIPARITNEL 209 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF--EYVMLKGINDSPRDALN 301 A + R ++ +N + +A +T + V+L+G+ND+ A Sbjct: 210 VARFDQSRLQILLVNHTNHANEVDEAFCLAMKKLRRVGVTLLNQSVLLRGVNDN---AKT 266 Query: 302 LIKI 305 L + Sbjct: 267 LANL 270 >gi|291543729|emb|CBL16838.1| pyruvate formate-lyase 1-activating enzyme [Ruminococcus sp. 18P13] Length = 241 Score = 40.6 bits (94), Expect = 0.43, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 67/209 (32%), Gaps = 32/209 (15%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C +C+ N E + + +E + + Sbjct: 28 GCPLRCLYCH--------NPDTWE--------QKQTLCMTPPQVMEKIRSERSFLLRGGV 71 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIA-RVGEEIGVMLAI 241 + G GEPL + L G + TSG +P R ++ ML + Sbjct: 72 TLSG-GEPLM-QPAFCEELLTLCRQEGF-----HTAIDTSGSIPLSQSRHAIDLANMLLL 124 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 + + + L + L +D C + + +V++ G +P Sbjct: 125 DIKDIDPEDCRTLTGKTNENALA-TLDHCEQ-----TGKEVWIRHVLVPGYTLNPDKLRR 178 Query: 302 LIKILKGIPA--KINLIPFNPWPGCEYLC 328 L + L G ++ L+P++ ++ Sbjct: 179 LAEKLSGYRCVKRVELLPYHTMGLYKWEA 207 >gi|229816492|ref|ZP_04446791.1| hypothetical protein COLINT_03544 [Collinsella intestinalis DSM 13280] gi|229807827|gb|EEP43630.1| hypothetical protein COLINT_03544 [Collinsella intestinalis DSM 13280] Length = 272 Score = 40.6 bits (94), Expect = 0.43, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 78/241 (32%), Gaps = 34/241 (14%) Query: 96 CIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR 155 +G IE++ + V +Q GC + C++C+ T E + Sbjct: 17 ALGRIHSIESMGTVDGPGVRFVVFTQ-GCPMRCAYCHNPDT-----WTTGEGAGTCVSVE 70 Query: 156 SLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR 215 LLG++ + + + G GEPL + V + + + + Sbjct: 71 RLLGEYESNRPF---------YRTGGLTVTG-GEPLLQPEFVGD---LFAAAHAAPAGRI 117 Query: 216 RITLSTSGF------VPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 L + G+ ++ E M+ + + L + +I Sbjct: 118 HTCLDSCGYAYNPKKPERFEKLLSETD-MVLLDIKHSDPVGHKALT----GCEPDRIIAF 172 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINL--IPFNPWPGCEYL 327 ++ +V++ GI D+ + L +++ + L +P++ +Y Sbjct: 173 GDELARR--KIKVVIRHVVVPGITDTEEECEALGRLIAPWHNVVGLEMLPYHTMGIVKYE 230 Query: 328 C 328 Sbjct: 231 Q 231 >gi|330507069|ref|YP_004383497.1| radical SAM domain-containing protein [Methanosaeta concilii GP-6] gi|328927877|gb|AEB67679.1| radical SAM domain protein [Methanosaeta concilii GP-6] Length = 302 Score = 40.6 bits (94), Expect = 0.44, Method: Composition-based stats. Identities = 38/241 (15%), Positives = 83/241 (34%), Gaps = 45/241 (18%) Query: 124 CSLTCSFCYTGTQKLVR-----NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 C++ C +C +R N + + QVL P + Sbjct: 51 CNIQCKYC-------IRDFDCVNESRPGVTSQVL--------KPKEALERVDQVLEKYHY 95 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIG 236 I + + G GEPL N + ++L + + + LST+G I + Sbjct: 96 IKVVAVAGPGEPLFN-EETFETLRMVGEKY----PNIILCLSTNGLLLPDKIQELDRLGV 150 Query: 237 VMLAISLHAVSNDLRNILVPI----NRKY-PLEMLIDACRHYPG-----LSNARRITFEY 286 + ++L+A+ + + ++Y LE C + + + Sbjct: 151 CNITVTLNAIDPQIGQHIYDYVNYEGKRYEGLEAATLLCNQQLKGIEEAVRLKKIVKINT 210 Query: 287 VMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEY---LCSDQKDIVTFSECIK 342 V++ GIND +++ +K + I N++P P ++ ++ + + Sbjct: 211 VIIPGINDL--HIIDIAHKIKSMGVFIHNVMPL--IPQYKFAHIKPPSPEEKRKIQDELG 266 Query: 343 R 343 + Sbjct: 267 K 267 >gi|291565978|dbj|BAI88250.1| pyruvate formate-lyase activating enzyme [Arthrospira platensis NIES-39] Length = 255 Score = 40.6 bits (94), Expect = 0.44, Method: Composition-based stats. Identities = 40/250 (16%), Positives = 87/250 (34%), Gaps = 60/250 (24%) Query: 123 GCSLTCSFCYTGTQKLV---RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC L C +C+ + V + +T EEI+ +V+ RS + G + G Sbjct: 40 GCPLRCLYCHNPDCQEVAGGKQVTVEEIIQEVVKYRSYMRFSNGGITVTG---------- 89 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 GEPL + V I L L TSG++P + + Sbjct: 90 --------GEPLMQPEFVA---EIFRRCRELGI---HTALDTSGYIP----------INV 125 Query: 240 AISLHAVSNDLRNILV-PINRKY------PLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 A + ++ + + + Y +E ++ ++ ++ + F V++ + Sbjct: 126 AKPVLDYTDLVLLDIKSYHSETYRKVTCVSVEPTLNFAKYLHEINKPTWVRF--VLVPNL 183 Query: 293 NDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYLC------------SDQKDIVTFS 338 + + L K + G K+ ++PF+ ++ +++ T Sbjct: 184 TNDINNMEALAKFVSGFSNVEKVEILPFHKMGEYKWEQIGYEYKLKDTEEPTPEEVSTAI 243 Query: 339 ECIKRSGYSS 348 ++ G + Sbjct: 244 NIFQKYGLAV 253 >gi|284051128|ref|ZP_06381338.1| pyruvate formate-lyase activating enzyme [Arthrospira platensis str. Paraca] Length = 249 Score = 40.6 bits (94), Expect = 0.44, Method: Composition-based stats. Identities = 40/250 (16%), Positives = 87/250 (34%), Gaps = 60/250 (24%) Query: 123 GCSLTCSFCYTGTQKLV---RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC L C +C+ + V + +T EEI+ +V+ RS + G + G Sbjct: 34 GCPLRCLYCHNPDCQEVAGGKQVTVEEIIQEVVKYRSYMRFSNGGITVTG---------- 83 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 GEPL + V I L L TSG++P + + Sbjct: 84 --------GEPLMQPEFVA---EIFRRCRELGI---HTALDTSGYIP----------INV 119 Query: 240 AISLHAVSNDLRNILV-PINRKY------PLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 A + ++ + + + Y +E ++ ++ ++ + F V++ + Sbjct: 120 AKPVLDYTDLVLLDIKSYHSETYRKVTCVSVEPTLNFAKYLHEINKPTWVRF--VLVPNL 177 Query: 293 NDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYLC------------SDQKDIVTFS 338 + + L K + G K+ ++PF+ ++ +++ T Sbjct: 178 TNDINNMEALAKFVSGFSNVEKVEILPFHKMGEYKWEQIGYEYKLKDTEEPTPEEVSTAI 237 Query: 339 ECIKRSGYSS 348 ++ G + Sbjct: 238 NIFQKYGLAV 247 >gi|206889617|ref|YP_002249501.1| nitrogen fixation protein [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741555|gb|ACI20612.1| nitrogen fixation protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 293 Score = 40.6 bits (94), Expect = 0.44, Method: Composition-based stats. Identities = 38/251 (15%), Positives = 87/251 (34%), Gaps = 49/251 (19%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARS--LLGDFPGCEDIEGMVIPSVGRKISN 181 C+++C++C RN V +R E ++ +++ + +IS Sbjct: 36 CNISCNYC-------NRN------YDCVNESRPGVSSRIITPLEALKRVLVATERDRISV 82 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVML 239 I + G G+PL N ++ + F + LST+G + + + + Sbjct: 83 IGVAGPGDPLAN-ESTFNFFKLVRKE----FPNIFLCLSTNGLLLPKKVEVLQDLGIFTV 137 Query: 240 AISLHAVSNDLRNILVPI------------NRKYPLEMLIDACRHYPGLSNARRITFEYV 287 ++++A++ + +Y LE + + V Sbjct: 138 TVTINAINPSTAEKIYAWILYDGKLMKGREASEYLLENQWNGLEMLTDR--GFCVKVNSV 195 Query: 288 MLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPG---CEYLCSDQKDIVTFSECIKR 343 ++ G+N+ N+ + + + AK+ N+IP P + + + ++ Sbjct: 196 LIPGVNERE--IENIAERARRLKAKVMNIIPL--IPNGKMINLQKPSCQVLEDIRKVCEK 251 Query: 344 SGYSSPIRTPR 354 IR R Sbjct: 252 H-----IRQIR 257 >gi|195953319|ref|YP_002121609.1| nitrogenase cofactor biosynthesis protein NifB [Hydrogenobaculum sp. Y04AAS1] gi|195932931|gb|ACG57631.1| nitrogenase cofactor biosynthesis protein NifB [Hydrogenobaculum sp. Y04AAS1] Length = 469 Score = 40.6 bits (94), Expect = 0.44, Method: Composition-based stats. Identities = 38/219 (17%), Positives = 86/219 (39%), Gaps = 31/219 (14%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C++C N + ++ ++L P + + + ++S + Sbjct: 51 CNIQCNYCNRKYD--CANESRPGVVSELLT--------PEEAAKKVLAVAMEIPQLSVVG 100 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG-----FVPNIARVGEEIGVM 238 + G G+PL N + ++ + + ++ LST+G +V I + + V Sbjct: 101 IAGPGDPLANPERTFRTFELIKEKA----PDIKLCLSTNGLVLDKYVDKIKEL-DVDHVT 155 Query: 239 LAISLHAVSNDLRN--ILVPINRKYPLEMLIDAC--RHYPGL----SNARRITFEYVMLK 290 + ++ +V R + +++Y + + Y GL N + V + Sbjct: 156 VTVNAVSVDTASRIYPWVFYNHKRYKGKEAAAILLEKQYEGLQACVENGILVKVNTVFVP 215 Query: 291 GINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEYLC 328 IN + L+L K +K I A + N++P+ G + Sbjct: 216 EING--DEILDLSKKVKSIEAFLHNIMPYVEGDGTAFQK 252 >gi|91070512|gb|ABE11419.1| putative organic radical activating enzyme [uncultured Prochlorococcus marinus clone HOT0M-3E5] Length = 225 Score = 40.6 bits (94), Expect = 0.44, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 27/119 (22%) Query: 110 EKSRGTLCVSSQVGCSLTCSFCYTG---TQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166 + + GC + CS+C T +K +++ E+I+ ++ +AR F Sbjct: 21 YHAGKSAFFIRLAGCKVGCSWCDTKNSWDEKKHPSISIEKIIDRIKIARKKGASF----- 75 Query: 167 IEGMVIPSVGRKISNIVMMGMGEPL-CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF 224 V+ G GEPL N DN K++ + MG +I + TSG Sbjct: 76 ---------------CVITG-GEPLQHNLDNFCKAIKKMT--MGEEQKPMKIHIETSGV 116 >gi|187933399|ref|YP_001885920.1| glycyl-radical enzyme activating protein family [Clostridium botulinum B str. Eklund 17B] gi|187721552|gb|ACD22773.1| glycyl-radical enzyme activating protein family [Clostridium botulinum B str. Eklund 17B] Length = 313 Score = 40.6 bits (94), Expect = 0.44, Method: Composition-based stats. Identities = 9/100 (9%), Positives = 34/100 (34%), Gaps = 13/100 (13%) Query: 264 EMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWP 322 ++++ + + R+ ++ ND+ +A+ + + INL+PF+ Sbjct: 208 DLILKNIKELINCNWQGRLVIRMPVIHNFNDTVENAMATADFMNDLGIYEINLLPFHRMG 267 Query: 323 GCEY------------LCSDQKDIVTFSECIKRSGYSSPI 350 ++ + ++ + + + + Sbjct: 268 DSKWTQLGKKYSYRNDEPTSEEKLDELQDVYLDRKIACYV 307 >gi|322391329|ref|ZP_08064799.1| pyruvate formate-lyase activating enzyme [Streptococcus peroris ATCC 700780] gi|321145755|gb|EFX41146.1| pyruvate formate-lyase activating enzyme [Streptococcus peroris ATCC 700780] Length = 264 Score = 40.6 bits (94), Expect = 0.45, Method: Composition-based stats. Identities = 39/247 (15%), Positives = 84/247 (34%), Gaps = 58/247 (23%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + R T +++L + L R GD G Sbjct: 37 GCQMRCQYCHNPDTWAMETNKSRVRTVDDVLEEALRYRGFWGDKGG-------------- 82 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVG 232 I + G GE L D + +L + G+ TL T + + Sbjct: 83 ----ITVSG-GEALLQIDFLI-ALFTKAKEKGI-----HCTLDTCALPFRNKPRYLEKFD 131 Query: 233 EEIGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 + + V + + + +++ I+ + K I AC Y + + +V++ Sbjct: 132 KLMAVTDLVLLDIKEINDAQHRIVTSQSNK-----TILACAQYLS-DIGKPVWIRHVLVP 185 Query: 291 GINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVT 336 G+ D D + L K +K + K ++P++ ++ ++ + Sbjct: 186 GLTDRDEDLIELGKFVKTLKNVDKFEILPYHTMGEFKWRELGIPYSLEGVKPPTKERVKN 245 Query: 337 FSECIKR 343 ++ + Sbjct: 246 -AKELMD 251 >gi|255526666|ref|ZP_05393571.1| Radical SAM domain protein [Clostridium carboxidivorans P7] gi|296187171|ref|ZP_06855568.1| radical SAM domain protein [Clostridium carboxidivorans P7] gi|255509646|gb|EET85981.1| Radical SAM domain protein [Clostridium carboxidivorans P7] gi|296048206|gb|EFG87643.1| radical SAM domain protein [Clostridium carboxidivorans P7] Length = 454 Score = 40.6 bits (94), Expect = 0.45, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 69/197 (35%), Gaps = 25/197 (12%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLV--RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172 LC++ C+L C +C+ R L + EI + I+ ++ Sbjct: 96 ALCLNVAHDCNLRCKYCFADEGDYKGCRELMSAEI---------------AKKAIDFVIK 140 Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV- 231 S RK + G GEPL F+ +K+ + + + R T++T+ + N + Sbjct: 141 KSGPRKNIEVDWFG-GEPLMAFNVIKEVMEYTKEQEKIHNKNIRFTMTTNATLLNDEIMD 199 Query: 232 ---GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVM 288 ++L+I ND + V Y + ++ + + + + + Sbjct: 200 YLDKNMGNIILSIDGRKEVNDKVRVRVDGTGSY--DSILPKIKKMVEMRDKSKQYYARGT 257 Query: 289 LKGIN-DSPRDALNLIK 304 N D D + Sbjct: 258 FTRWNTDFFEDIKFMAD 274 >gi|225568673|ref|ZP_03777698.1| hypothetical protein CLOHYLEM_04751 [Clostridium hylemonae DSM 15053] gi|225162515|gb|EEG75134.1| hypothetical protein CLOHYLEM_04751 [Clostridium hylemonae DSM 15053] Length = 226 Score = 40.6 bits (94), Expect = 0.45, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 64/200 (32%), Gaps = 34/200 (17%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C++C+ + G+ +++ G + + Sbjct: 17 GCPLRCAYCHNPD-----------------TWKFEAGEEFSPQEVAGKIRRYRPYLTNGG 59 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 V + GEPL + + I G + S G + RV ++LA Sbjct: 60 VTVTGGEPLMQPEFTAELFRIL-KEEGF---HTALDTSGIGNLQLAERVLAYTDLVLADV 115 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA--RRITFEYVMLKGINDSPRDAL 300 + R +Y + + L+ + V++ GIND+ Sbjct: 116 KFLTEEEYR--------RYCRADFRE-VTAFLDLTKKLGIPLWIRRVLVPGINDTEEHIK 166 Query: 301 NLIKILKGIPA--KINLIPF 318 L+ L P KI L+PF Sbjct: 167 KLVDFLTKYPNVEKIELLPF 186 >gi|118444986|ref|YP_878968.1| pyruvate formate-lyase [Clostridium novyi NT] gi|118135442|gb|ABK62486.1| pyruvate formate-lyase [Clostridium novyi NT] Length = 299 Score = 40.6 bits (94), Expect = 0.46, Method: Composition-based stats. Identities = 13/86 (15%), Positives = 28/86 (32%), Gaps = 14/86 (16%) Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIPAK--INLIPFNPWPGCEY---------- 326 I ++ G+ND + N K + +NL+P++ +Y Sbjct: 212 GVPIVIRVPVIPGVNDDEENIRNTAKFAMSLNGVKEVNLLPYHRLGENKYDYLGYEYKMK 271 Query: 327 --LCSDQKDIVTFSECIKRSGYSSPI 350 +I +++ G + I Sbjct: 272 DLEVPGDDNINKLKSIVEQYGLNCKI 297 >gi|224548902|dbj|BAH24183.1| NifB protein [Paenibacillus abekawaensis] Length = 458 Score = 40.6 bits (94), Expect = 0.46, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 90/249 (36%), Gaps = 46/249 (18%) Query: 124 CSLTCSFCYTGTQKLVR-----NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 C++ C++C R N + ++ +VL + G + + + Sbjct: 41 CNIQCNYC-------NRKFDCVNESRPGVVSEVLTPQQAERKVKG--------VAAQLMQ 85 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASD---SMGLSFSKRRITLSTSGFVPNIARVGEEI 235 +S + + G G+PL N + + + + + L S +TL +V I +G Sbjct: 86 LSVVGIAGPGDPLANPEATFDTFARVKEHVPDVSLCLSTNGLTLYR--YVDEIVELGIR- 142 Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLE-MLIDACRHYPGL---------SNARRITFE 285 + I+++A+ D+ + P + +A + Sbjct: 143 --HVTITINAIDPDVGREIYPWAVDEGIRYEGREAAELLITRQLLGVEMLAKRGILVKVN 200 Query: 286 YVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEY-----LCSDQKDIVTFSE 339 +M+ G+ND + + K +K + A + N+ P PG +Y K++ T E Sbjct: 201 SIMIPGVNDH--HLVAVSKKVKELGATLHNVTPLIIAPGSQYEKDGRKAPRPKELHTVQE 258 Query: 340 CIKRSGYSS 348 + R G Sbjct: 259 QLGRDGMKV 267 >gi|298506217|gb|ADI84940.1| glycerol dehydratase-activating enzyme, putative [Geobacter sulfurreducens KN400] Length = 298 Score = 40.3 bits (93), Expect = 0.47, Method: Composition-based stats. Identities = 10/86 (11%), Positives = 28/86 (32%), Gaps = 14/86 (16%) Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIPAK--INLIPFNPWPGCEYLC-------- 328 I ++ G+ND + + P +NL+P++ + Sbjct: 211 HDTIWIRIPIIPGVNDDRANLEATAALAARTPGVRQVNLLPYHRTWHGKLRQLGRAGADD 270 Query: 329 ----SDQKDIVTFSECIKRSGYSSPI 350 ++ + + + +G ++ I Sbjct: 271 AIATPSRERMEELARIFRAAGLTTII 296 >gi|206603542|gb|EDZ40022.1| Putative radical SAM family protein [Leptospirillum sp. Group II '5-way CG'] Length = 530 Score = 40.3 bits (93), Expect = 0.47, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 70/195 (35%), Gaps = 27/195 (13%) Query: 99 GPVEIETVY--IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVR--NLTAEEILLQVLLA 154 +E+V+ R + + ++ GC CSFC + R E+I+ + Sbjct: 232 DLRYLESVFEGHEFYHRTMVGIQTKRGCPYGCSFCLYTYIEGKRVYYRDPEDIVNE---M 288 Query: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSK 214 R + G + + E + + K+L G+ S Sbjct: 289 RQYYDQWGIRNFWFADAQFIPG-------VKAIPEAMD----LLKALR----DSGMKISW 333 Query: 215 RRITLSTSGFVPNIARVGEEIGVM-LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY 273 + TS P +A++ E G+ L +S+ + S ++ + L + L+ L++ CR+ Sbjct: 334 SGY-IRTSLISPEMAKLMVESGMGDLEVSVTSGSQEILDSLR---MGFRLDQLVEGCRNL 389 Query: 274 PGLSNARRITFEYVM 288 I Y + Sbjct: 390 RDAGYKGNIILNYSL 404 >gi|39997200|ref|NP_953151.1| pyruvate formate-lyase-activating enzyme [Geobacter sulfurreducens PCA] gi|39984090|gb|AAR35478.1| pyruvate formate-lyase-activating enzyme, putative [Geobacter sulfurreducens PCA] Length = 298 Score = 40.3 bits (93), Expect = 0.48, Method: Composition-based stats. Identities = 10/86 (11%), Positives = 27/86 (31%), Gaps = 14/86 (16%) Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIPAK--INLIPFNPWPGCEYLC-------- 328 I ++ G+ND + + P +NL+P++ + Sbjct: 211 HDTIWIRIPIIPGVNDDRANLEATAALAARTPGVRQVNLLPYHRTWHGKLRQLGRAGADD 270 Query: 329 ----SDQKDIVTFSECIKRSGYSSPI 350 ++ + + +G ++ I Sbjct: 271 AIATPSRERMEELVRIFRAAGLTTII 296 >gi|124485405|ref|YP_001030021.1| hypothetical protein Mlab_0580 [Methanocorpusculum labreanum Z] gi|124362946|gb|ABN06754.1| MiaB-like tRNA modifying enzyme [Methanocorpusculum labreanum Z] Length = 416 Score = 40.3 bits (93), Expect = 0.48, Method: Composition-based stats. Identities = 36/246 (14%), Positives = 84/246 (34%), Gaps = 32/246 (13%) Query: 91 RFPARCIGGPVEIETVYIPEKS---RGTLCVSSQVGCSLTCSFCYTGTQ-KLVRNLTAEE 146 R+P I P I + Y+ + + GC+ C++C T + + +AE+ Sbjct: 99 RYPKIHIIDPALIHSCYMEVGTAHVGTNAVLQIARGCNGHCTYCITRLARGKLVSFSAED 158 Query: 147 ILLQ---VLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI 203 I+ Q ++ A + + + + G ++ + + + L Sbjct: 159 IVRQAKSIVEAGATEIQLTAQDTSSWGLDRNDGLRLPD---------------LLRQLCA 203 Query: 204 ASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVP-INRKY 261 + + +P + + + + + LH + ++ + R+Y Sbjct: 204 IPGNFMIRIGMANPD----TLLPILDDFLDALKDPKIFLFLHIPVQSGSDSVLRLMGRRY 259 Query: 262 PLEMLIDACRHYPGLSNARRITFEYVM-LKGINDSPRDALNLIKILKG-IPAKINLIPFN 319 + C+ RI+ +Y+ G D DA + ++ P K+N+ F+ Sbjct: 260 TSAQYEEICQRARKAFPEIRISTDYIAGFSGETD--EDAAKSAEQIRRTRPGKVNITRFS 317 Query: 320 PWPGCE 325 P Sbjct: 318 VRPNTP 323 >gi|303240146|ref|ZP_07326666.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2] gi|302592237|gb|EFL61965.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2] Length = 359 Score = 40.3 bits (93), Expect = 0.49, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 21/119 (17%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC++ C +C+ Q + + E + V + + ++ Sbjct: 39 GCNIHCEYCFGSLQGN--------------HYKGGKDSYFQKEALLRYVKDAGEIGVRSM 84 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 +G GEPL N +V +++ + G+ S L T+G + + G E L Sbjct: 85 AFIGEGEPLLN-PHVYEAI-VLGKKSGVDIS-----LGTNGILYDTGEAGVEALKHLTW 136 >gi|260888273|ref|ZP_05899536.1| radical SAM domain protein [Selenomonas sputigena ATCC 35185] gi|330838395|ref|YP_004412975.1| Radical SAM domain protein [Selenomonas sputigena ATCC 35185] gi|260861809|gb|EEX76309.1| radical SAM domain protein [Selenomonas sputigena ATCC 35185] gi|329746159|gb|AEB99515.1| Radical SAM domain protein [Selenomonas sputigena ATCC 35185] Length = 467 Score = 40.3 bits (93), Expect = 0.49, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 56/147 (38%), Gaps = 23/147 (15%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQ--KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVI 172 +LC+ C+L C +C+ + R + + E+ GC ++ ++ Sbjct: 94 SLCLMVAQDCNLRCKYCFGDGGNYGMERAVMSPEV---------------GCRAVDFLIE 138 Query: 173 PSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIAR 230 S RK I G GEPL N +KK + ++TL+T+G + Sbjct: 139 GSGPRKHCEIDFFG-GEPLLNMKTIKKVTEHIRKREKETGKIFKLTLTTNGMLLSDANIA 197 Query: 231 VGEEIGVMLAISL---HAVSNDLRNIL 254 E L +SL ++ +R + Sbjct: 198 WLNENDFSLVLSLDGRRETNDAMRPDI 224 >gi|197121896|ref|YP_002133847.1| radical SAM protein [Anaeromyxobacter sp. K] gi|196171745|gb|ACG72718.1| Radical SAM domain protein [Anaeromyxobacter sp. K] Length = 446 Score = 40.3 bits (93), Expect = 0.49, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 69/209 (33%), Gaps = 33/209 (15%) Query: 113 RGTLCVSSQVGCSLTCSFCYTGTQ---------KLVRNLTAEEILLQVLLARSLLGDFPG 163 R + S C+ C C + ++ R TA E+ + R L Sbjct: 186 RDEGAIPSSAACNAACVGCLSEQDEGMPPSSHERIARPPTAAEMAD--VAVRHLERATGR 243 Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223 G GEPL + ++K++ + + + +T+G Sbjct: 244 VMVSFGQGCE--------------GEPLLRWKEIEKAIRLIRART----RRGTLHANTNG 285 Query: 224 FVP-NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI 282 +P +AR+ + ISL++ S DL Y LE ++ R + + Sbjct: 286 SLPEALARLVAAGLESVRISLNSASPDLYAAYYRPT-GYGLEDVVRGVR--AAKAGGAYV 342 Query: 283 TFEYVMLKGINDSPRDALNLIKILKGIPA 311 + G+ D +A L +++ Sbjct: 343 ALNLLTFPGVTDRGGEAERLCRLVADTGV 371 >gi|126697727|ref|YP_001086624.1| 4-hydroxyphenylacetate decarboxylase, activating subunit [Clostridium difficile 630] gi|122974232|sp|Q18CP3|HPDA_CLOD6 RecName: Full=4-hydroxyphenylacetate decarboxylase activating enzyme; Short=Hpd-AE gi|115249164|emb|CAJ66975.1| putative 4-hydroxyphenylacetate decarboxylase,activating subunit HpdA; putative glycyl-radical activating family protein [Clostridium difficile] Length = 316 Score = 40.3 bits (93), Expect = 0.49, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 61/187 (32%), Gaps = 23/187 (12%) Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236 R + G GEPL + + + ++ I S ++ +I Sbjct: 134 RSNGGVTFSG-GEPLLQHEFL---HEVLLKCHEVNI-HTAIETSACVSNEVFNKIFNDID 188 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 H R Y +++++ + R+ ++ G NDS Sbjct: 189 FAFIDIKHM----DREKHKEQTGVYN-DLILENISNLANSDWNGRLVLRVPVISGFNDSD 243 Query: 297 RDALNLIKIL-KGIPAKINLIPFNPWPGC-------EYLCSDQKDI-----VTFSECIKR 343 + ++I + K +INL+PF+ EY SD+ D+ + Sbjct: 244 ENISDIISFMHKNNLVEINLLPFHRLGESKWTQLGKEYEYSDKGDVDEGHLEELQDIFLD 303 Query: 344 SGYSSPI 350 +G + + Sbjct: 304 NGIACYV 310 >gi|145631298|ref|ZP_01787070.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus influenzae R3021] gi|144983083|gb|EDJ90583.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus influenzae R3021] Length = 180 Score = 40.3 bits (93), Expect = 0.50, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 15/91 (16%) Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL-- 327 Y N YV++ G DS D L + ++G+ K+ L+P++ ++ Sbjct: 89 KYLQKRNQH-TWIRYVVVPGYTDSDHDVHLLGQFIEGMTNIEKVELLPYHRLGAHKWKTL 147 Query: 328 ----------CSDQKDIVTFSECIKRSGYSS 348 ++ + ++ G++ Sbjct: 148 GLDYELEDVLPPTKESLEHIKTILEGYGHTV 178 >gi|257470672|ref|ZP_05634762.1| pyruvate-formate lyase-activating enzyme [Fusobacterium ulcerans ATCC 49185] gi|317064878|ref|ZP_07929363.1| pyruvate-formate lyase-activating enzyme [Fusobacterium ulcerans ATCC 49185] gi|313690554|gb|EFS27389.1| pyruvate-formate lyase-activating enzyme [Fusobacterium ulcerans ATCC 49185] Length = 243 Score = 40.3 bits (93), Expect = 0.51, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 76/209 (36%), Gaps = 32/209 (15%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C FC+ N++ E+I F +G G ++ Sbjct: 29 GCPLRCKFCHNPD---TWNMSEEKIKE------EATETFEKVRKYKGYFGKKGGLTVTG- 78 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLA 240 GEPL D V + G++ + TSG++ + V E ++L Sbjct: 79 -----GEPLLQADFVLELFK-LCKEDGIN-----TVVDTSGYIFNEKVKEVLEYTDLVL- 126 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 + + A+ + L + LE + ++ +++ +V++ I D + Sbjct: 127 LDIKAIDEKVYKELTGVE----LENTLKFAQYLKEK--GKKVWIRHVVVPRITDDDKLLN 180 Query: 301 NLIKILKGIPA--KINLIPFNPWPGCEYL 327 L + + + K+ L+P++ +Y Sbjct: 181 RLAEYVSALGNVEKVELLPYHRLGEFKYK 209 >gi|303233512|ref|ZP_07320175.1| radical SAM domain protein [Finegoldia magna BVS033A4] gi|302495412|gb|EFL55155.1| radical SAM domain protein [Finegoldia magna BVS033A4] Length = 447 Score = 40.3 bits (93), Expect = 0.51, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 69/206 (33%), Gaps = 41/206 (19%) Query: 51 QGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPE 110 + + + ++ +F + D K++ + V+ + Sbjct: 47 EDIGKYPK-LKEFCEDNFILKT----------DDNIKYIKEIYNKSFEKKVK------SD 89 Query: 111 KSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGM 170 + TL +S + C+L C +CY G +N E+ Sbjct: 90 LNGMTLMISQK--CNLKCRYCY-GDGGEYQN--RGEMT------------LDTAIKALNF 132 Query: 171 VIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIA--SDSMGLSFSKRRITLSTSGFVPNI 228 ++ RK I G GEPL NF+ +K + + + G +T + + NI Sbjct: 133 MLNFTKRKDLYICFFG-GEPLMNFNLIKGFIEYMEHNSNFGREI-HYSMTTNLTLLNENI 190 Query: 229 ARVGEEIGVMLAISLHA---VSNDLR 251 R + + L +SL ++ R Sbjct: 191 KRFINDKNISLTVSLDGDKISNDSNR 216 >gi|228989633|ref|ZP_04149617.1| hypothetical protein bpmyx0001_4050 [Bacillus pseudomycoides DSM 12442] gi|228995821|ref|ZP_04155480.1| hypothetical protein bmyco0003_4180 [Bacillus mycoides Rock3-17] gi|229003440|ref|ZP_04161260.1| hypothetical protein bmyco0002_4150 [Bacillus mycoides Rock1-4] gi|228757818|gb|EEM07043.1| hypothetical protein bmyco0002_4150 [Bacillus mycoides Rock1-4] gi|228763901|gb|EEM12789.1| hypothetical protein bmyco0003_4180 [Bacillus mycoides Rock3-17] gi|228770170|gb|EEM18750.1| hypothetical protein bpmyx0001_4050 [Bacillus pseudomycoides DSM 12442] Length = 243 Score = 40.3 bits (93), Expect = 0.51, Method: Composition-based stats. Identities = 37/243 (15%), Positives = 78/243 (32%), Gaps = 50/243 (20%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C +C+ N EI + +P + I Sbjct: 28 GCLLRCQYCH--------NADTWEI------GKGKEITVEEVMQDVTCYLPFIEASGGGI 73 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--------FVPNIARVGEE 234 + G GEPL D + + + + T+ +SG F + + + Sbjct: 74 TVSG-GEPLLQLDFL---IELFKKCKEIGI---HTTIDSSGGCYSEEPEFQRKLNILMDY 126 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 ++L + L + L E ++ R+ + I +V++ G+ D Sbjct: 127 TDLVL-LDLKHIDPKKHRKLTGKTN----EHILQFARYLSDK--QKPIWVRHVLVPGVTD 179 Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWP-------GCEY-----LCSDQKDIVTFSEC 340 S D L ++ + K+ ++P++ G +Y +K++ Sbjct: 180 SEEDLQRLSSFIQSLSNVKKVEVLPYHKLGVYKWEALGHKYPLEGVEPPTEKNVQKAKNI 239 Query: 341 IKR 343 ++ Sbjct: 240 LQA 242 >gi|83594329|ref|YP_428081.1| radical SAM family protein [Rhodospirillum rubrum ATCC 11170] gi|83577243|gb|ABC23794.1| Radical SAM [Rhodospirillum rubrum ATCC 11170] Length = 265 Score = 40.3 bits (93), Expect = 0.51, Method: Composition-based stats. Identities = 39/212 (18%), Positives = 73/212 (34%), Gaps = 35/212 (16%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG-RKISN 181 GC C++C+ + G ++ V P G +I+ Sbjct: 50 GCQFRCAYCHNPD-----------------TWKLHNGRALDLDEAMAEVSPYAGFLRIAG 92 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN--IARVGEEIGVML 239 V + GEPL D L+ D +GL L T GF+ R + + ++L Sbjct: 93 GVTVSGGEPLMQADFTGALLARLKDQLGL-----HTALDTQGFLHAGVSDRWFDPVDLVL 147 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 + + + + L L + L + + YV++ G+ D D Sbjct: 148 -LDIKHSDPEAYHRLTGQA----LAPTLAFAHRLVDL--GKPMWIRYVLVPGLTDGADDI 200 Query: 300 LNLIKILKGI-PA--KINLIPFNPWPGCEYLC 328 L L + PA ++ ++PF+ ++ Sbjct: 201 DRLADFLACLGPAVQRVEVLPFHQMGAAKWAR 232 >gi|291546361|emb|CBL19469.1| pyruvate formate-lyase 1-activating enzyme [Ruminococcus sp. SR1/5] Length = 249 Score = 40.3 bits (93), Expect = 0.51, Method: Composition-based stats. Identities = 40/243 (16%), Positives = 78/243 (32%), Gaps = 55/243 (22%) Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC++ C FC+ T K TA+E+L + RS G G Sbjct: 33 GCAMRCQFCHNPDTWQMKTGTEYTADELLEKACRYRSYWGSKGG---------------- 76 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEE 234 I + G GEPL D + + + L TL TSG P + E Sbjct: 77 --ITVSG-GEPLLQIDFL---TELFRKAKKLGI---HTTLDTSGNPYTEEGPWYEKWEEL 127 Query: 235 IGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 + + + + + + IL K ++ R + + +V++ Sbjct: 128 MKYTDLVMLDIKHIDEEQHKILTGCTNKN----ILAMARKLSDM--GVSMWIRHVLVPER 181 Query: 293 NDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFS 338 ND L + + ++ ++P++ ++ ++ I Sbjct: 182 NDRDDYLHRLADFIATLKTVERVEVLPYHTLGTFKWENLHIDYPLKGINPPTKERIENAE 241 Query: 339 ECI 341 + + Sbjct: 242 KIL 244 >gi|68248784|ref|YP_247896.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus influenzae 86-028NP] gi|145635283|ref|ZP_01790986.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae PittAA] gi|145637339|ref|ZP_01792999.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae PittHH] gi|145641513|ref|ZP_01797091.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae R3021] gi|68056983|gb|AAX87236.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae 86-028NP] gi|145267427|gb|EDK07428.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae PittAA] gi|145269431|gb|EDK09374.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae PittHH] gi|145273804|gb|EDK13672.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae 22.4-21] Length = 246 Score = 40.3 bits (93), Expect = 0.51, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 15/91 (16%) Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL-- 327 Y N YV++ G DS D L + ++G+ K+ L+P++ ++ Sbjct: 155 KYLQKRNQH-TWIRYVVVPGYTDSDHDVHLLGQFIEGMTNIEKVELLPYHRLGAHKWKTL 213 Query: 328 ----------CSDQKDIVTFSECIKRSGYSS 348 ++ + ++ G++ Sbjct: 214 GLDYELEDVLPPTKESLEHIKTILEGYGHTV 244 >gi|227551205|ref|ZP_03981254.1| [formate-C-acetyltransferase]-activating enzyme [Enterococcus faecium TX1330] gi|257896172|ref|ZP_05675825.1| formate acetyltransferase activating enzyme [Enterococcus faecium Com12] gi|293377172|ref|ZP_06623380.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium PC4.1] gi|227179673|gb|EEI60645.1| [formate-C-acetyltransferase]-activating enzyme [Enterococcus faecium TX1330] gi|257832737|gb|EEV59158.1| formate acetyltransferase activating enzyme [Enterococcus faecium Com12] gi|292644192|gb|EFF62294.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium PC4.1] Length = 253 Score = 40.3 bits (93), Expect = 0.52, Method: Composition-based stats. Identities = 44/275 (16%), Positives = 91/275 (33%), Gaps = 56/275 (20%) Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEIL 148 + IG IET + V Q GC + C FC+ T + +A+E+L Sbjct: 1 MEEKTIGYVHSIETFGSVDGPGLRFVVFMQ-GCRMRCQFCHNPDTWNIGGGKEYSADELL 59 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 + R GD G I + G GEPL D + + A + Sbjct: 60 DKAERFRPYWGDKGG------------------ITVSG-GEPLLQIDFLIELFKKAKER- 99 Query: 209 GLSFSKRRITLSTSGFV-----PNIARVGEEIGVM--LAISLHAVSNDLRNILVPINRKY 261 K TL T G P +R E + L + + N+ L + Sbjct: 100 -----KMHTTLDTCGKPFTYEDPFFSRFQELMKYTDLLLFDIKHIDNEEHKKLT----HW 150 Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFN 319 E +++ ++ ++ + +V++ +D + L ++ + ++ ++P++ Sbjct: 151 DNENILEMAQYLSKINK--PVWIRHVLVPERSDYDEYLIRLDNFIQTLSNVDRVEILPYH 208 Query: 320 PWPGCEY------------LCSDQKDIVTFSECIK 342 ++ ++ + + Sbjct: 209 TMGKYKWETLGLKYPLEGIEPPTKERVENAKRLLH 243 >gi|315230631|ref|YP_004071067.1| hypothetical protein TERMP_00867 [Thermococcus barophilus MP] gi|315183659|gb|ADT83844.1| hypothetical protein TERMP_00867 [Thermococcus barophilus MP] Length = 424 Score = 40.3 bits (93), Expect = 0.53, Method: Composition-based stats. Identities = 32/207 (15%), Positives = 78/207 (37%), Gaps = 25/207 (12%) Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167 + ++ + V GC+L+C FC R + V+ L+ F Sbjct: 113 LIDRGTNLIQVRGSSGCNLSCIFCSVDEGPYSRTRR----IDYVVDIDYLMKWFDEVARF 168 Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-- 225 +G + + + G GEPL + + + + + + +++ ++G + Sbjct: 169 KGKGLEAH--------LDGQGEPLL-YPFIVELVQALKEHPNVDV----VSMQSNGVLLN 215 Query: 226 -PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF 284 + + E + +S+H++ + +L+ + Y L +++ + Sbjct: 216 DKLVEELAEAGLDRINLSVHSLDPEKAKMLM-GMKNYDLNHVLEMAEALVNA--GIDVLL 272 Query: 285 EYVMLKGINDSPRDALNLIKILKGIPA 311 V++ G+ND+ A I+ + I A Sbjct: 273 APVIIFGVNDNE--AEAFIEFARKIGA 297 >gi|114567979|ref|YP_755133.1| radical SAM protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338914|gb|ABI69762.1| radical SAM domain protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 458 Score = 40.3 bits (93), Expect = 0.53, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 84/220 (38%), Gaps = 24/220 (10%) Query: 102 EIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF 161 + V + S LC++ C++ CS+C+ L +L+ Sbjct: 90 AVPVVELSRLSVKALCLNMAHSCNMKCSYCFASQGNFG-------------LRPALMSLE 136 Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221 ++ ++ S R+ + G GEPL F +K ++ A + + + TL+T Sbjct: 137 TAKAALDFLLEQSGERQNLEVDFFG-GEPLLVFPVIKDLVAYARERERKTGKRFSFTLTT 195 Query: 222 SGFV--PNIARVG--EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277 + + + +IGV++++ ++D R+ L+ N + E+++ R Sbjct: 196 NCLLLDEEVQEFVIDHKIGVIMSLDGRKETHD-RHRLL-NNGQGSYELVLPKIREMLAKE 253 Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIP 317 + D D +++++ G ++L P Sbjct: 254 P-ISYYVRGTFTRDNLDFSEDLRHMLEL--GFTC-VSLEP 289 >gi|257126654|ref|YP_003164768.1| pyruvate formate-lyase activating enzyme [Leptotrichia buccalis C-1013-b] gi|257050593|gb|ACV39777.1| pyruvate formate-lyase activating enzyme [Leptotrichia buccalis C-1013-b] Length = 254 Score = 40.3 bits (93), Expect = 0.54, Method: Composition-based stats. Identities = 36/215 (16%), Positives = 81/215 (37%), Gaps = 35/215 (16%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C +C+ N+ EI + E ++ ++ K + Sbjct: 39 GCPLRCLYCH--------NVDTWEI-------KDKKMIMTASEVMKEILKVRGFIKTGGV 83 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLA 240 + G GEPL + + + G+ L TSG++ +V E + M+ Sbjct: 84 TVSG-GEPLMQPEFLMELFK-LCRENGIQ-----TALDTSGYIFSDKAKQVLELVD-MVL 135 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 + + ++ + IL + L+ + ++ ++ YV++ G +D D Sbjct: 136 LDIKHINPEKYKILTSVE----LDNTLKFAKYLNEINK--PTWLRYVLVPGYSDDENDLH 189 Query: 301 NLIKI---LKGIPAKINLIPFNPWPGCEYLCSDQK 332 K LK + +++++PF+ ++ ++ Sbjct: 190 EWAKFTSQLKNVE-RVDVLPFHQMGQYKWEKVGKE 223 >gi|290581007|ref|YP_003485399.1| putative pyruvate formate-lyase activating enzyme [Streptococcus mutans NN2025] gi|254997906|dbj|BAH88507.1| putative pyruvate formate-lyase activating enzyme [Streptococcus mutans NN2025] Length = 258 Score = 40.3 bits (93), Expect = 0.54, Method: Composition-based stats. Identities = 40/210 (19%), Positives = 78/210 (37%), Gaps = 21/210 (10%) Query: 123 GCSLTCSFCYT-GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG--RKI 179 GC L C +C +QK E++L ++G+ EDI V + + Sbjct: 30 GCPLRCPWCSNPESQKYK----PEQMLDAETKLPMIIGEEKTVEDIISEVKKDIDFYEES 85 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG-VM 238 + + GE F+ K++ + GL + T+ F + + + I V Sbjct: 86 GGGLTLSGGEIFAQFE-FAKAILKCAKEEGL-----HTAIETTAFAEH-EKFTDLIQYVN 138 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 + N +R+ V + I + ++ + I ++ N+S D Sbjct: 139 FIYTDLKHYNTIRHRKVTGVNNNLIIQNI-----HYAFTHKKTIVLRIPVIPDFNNSLDD 193 Query: 299 ALNLIKILKGIPA-KINLIPFNPWPGCEYL 327 A + K+ I K+ L+PF+ + +Y Sbjct: 194 AEHFAKLFNDIQVDKVQLLPFHQFGENKYK 223 >gi|220916688|ref|YP_002491992.1| Radical SAM domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219954542|gb|ACL64926.1| Radical SAM domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 446 Score = 40.3 bits (93), Expect = 0.54, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 69/212 (32%), Gaps = 33/212 (15%) Query: 110 EKSRGTLCVSSQVGCSLTCSFCYTGTQ---------KLVRNLTAEEILLQVLLARSLLGD 160 R + S C+ C C + ++ R TA E+ + R L Sbjct: 183 FYGRDEGAIPSSAACNAACVGCLSEQDEGMPPSSHERIARPPTAAEMAD--VAVRHLERA 240 Query: 161 FPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLS 220 G GEPL + ++K++ + + + + Sbjct: 241 TGRVMVSFGQGCE--------------GEPLLRWKEIEKAIRLIRART----RRGTLHAN 282 Query: 221 TSGFVP-NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279 T+G +P +AR+ + ISL++ S DL Y LE ++ R + Sbjct: 283 TNGSLPEALARLVAAGLESVRISLNSASPDLYAAYYRPT-GYGLEDVVRGVR--AAKAGG 339 Query: 280 RRITFEYVMLKGINDSPRDALNLIKILKGIPA 311 + + G+ D +A L +++ Sbjct: 340 AYVALNLLTFPGVTDRGGEAERLCQLVADTGV 371 >gi|118476198|ref|YP_893349.1| formate acetyltransferase activating enzyme [Bacillus thuringiensis str. Al Hakam] gi|196045353|ref|ZP_03112585.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus 03BB108] gi|229182833|ref|ZP_04310070.1| hypothetical protein bcere0004_4140 [Bacillus cereus BGSC 6E1] gi|118415423|gb|ABK83842.1| formate acetyltransferase activating enzyme [Bacillus thuringiensis str. Al Hakam] gi|196023937|gb|EDX62612.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus 03BB108] gi|228600639|gb|EEK58222.1| hypothetical protein bcere0004_4140 [Bacillus cereus BGSC 6E1] Length = 243 Score = 40.3 bits (93), Expect = 0.54, Method: Composition-based stats. Identities = 40/243 (16%), Positives = 76/243 (31%), Gaps = 50/243 (20%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C +C+ N EI + +P + I Sbjct: 28 GCLLRCQYCH--------NADTWEI------GKGKEITVEEVMQDVTCYLPFIEASGGGI 73 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--------FVPNIARVGEE 234 + G GEPL D + + + + T+ +SG F + + E Sbjct: 74 TVSG-GEPLLQLDFL---IELFKKCKEIGI---HTTVDSSGGCYSEEPEFQNKLDILMEY 126 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 ++L H S R + N I Y N I +V++ G+ D Sbjct: 127 TDLVLLDLKHIDSKKHRKLTGKPN------EHILQFARYLSDKNK-PIWVRHVLVPGVTD 179 Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWP-------GCEY-----LCSDQKDIVTFSEC 340 + D L ++ + K+ ++P++ G +Y +K++ Sbjct: 180 NEEDLQKLSSFIQSLSNVQKVEVLPYHKLGVYKWEALGHKYPLANVEPPTEKNVEQARHI 239 Query: 341 IKR 343 ++ Sbjct: 240 LQA 242 >gi|15920235|ref|NP_375904.1| magnesium-protoporphyrin IX monomethyl ester oxidative cyclase 66 kd subunit [Sulfolobus tokodaii str. 7] gi|15621017|dbj|BAB65013.1| 532aa long hypothetical magnesium-protoporphyrin ix monomethyl ester oxidative cyclase 66 kd subunit [Sulfolobus tokodaii str. 7] Length = 532 Score = 40.3 bits (93), Expect = 0.54, Method: Composition-based stats. Identities = 34/207 (16%), Positives = 77/207 (37%), Gaps = 28/207 (13%) Query: 106 VYIPEKSRGTLCVSSQVGCSLTCSFCY-TGTQKLV-RNLTAEEILLQVLLARSLLGDFPG 163 V I + C+ + GC C FC T T RN + IL ++ A+ L ++ Sbjct: 189 VKIFGDDQYVACLETARGCPYACDFCSVTPTWGNKWRNKSNNRILKEISKAKELGYNWIF 248 Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223 D +V P+ ++ + + M E N ++ + Sbjct: 249 FVDDIFIVWPNRSQRAA--LFRKMIE----TKNTINFIAQMRAD-------------VTA 289 Query: 224 FVPNIARVGEEIGVMLAIS-LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI 282 P + ++ + G+ +A + + S ++ L +++ + I+A + L I Sbjct: 290 RNPELIKLASDAGLRIAFLGIESGSQEV---LKKMHKGLAVSDSINAVK---TLHENGVI 343 Query: 283 TFEYVMLKGINDSPRDALNLIKILKGI 309 +M+ ++ +D +K+ + + Sbjct: 344 VLVGLMIGAPYETIKDIRATVKLSRKL 370 >gi|294055622|ref|YP_003549280.1| pyruvate formate-lyase activating enzyme [Coraliomargarita akajimensis DSM 45221] gi|293614955|gb|ADE55110.1| pyruvate formate-lyase activating enzyme [Coraliomargarita akajimensis DSM 45221] Length = 262 Score = 40.3 bits (93), Expect = 0.55, Method: Composition-based stats. Identities = 37/245 (15%), Positives = 83/245 (33%), Gaps = 48/245 (19%) Query: 123 GCSLTCSFCYT-GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC L C +C+ Q G+ E + VI Sbjct: 49 GCPLRCMYCHNPDAQG------------------KPHGEQKSPETVIEDVIKYRNFIKDG 90 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 + + GEPL V+++ +A + + TL TSGF+ + + +E+ + Sbjct: 91 GLTISGGEPLMQPQFVEETFKLAKE------AGLHTTLDTSGFLGH--KASDELLDNTDL 142 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL--SNARRITFEYVMLKGINDSPRDA 299 L + P+ KY + +D + ++ +V++ G+ D+ ++ Sbjct: 143 VLLDI-----KSWSPLTYKYVTGVCVDNTVKFAKRLEERGNKVWIRFVLVPGLTDNAKNV 197 Query: 300 LNLIKILK--GIPAKINLIPFNPWPGCEYLC------------SDQKDIVTFSECIKRSG 345 L + + G ++ ++PF+ +Y + ++ + G Sbjct: 198 DGLAEFVATLGNVERVEILPFHKMGEHKYAAAGLDYKLKDTPTPTKGEVDAVQRIFAKHG 257 Query: 346 YSSPI 350 + + Sbjct: 258 VETFV 262 >gi|242277640|ref|YP_002989769.1| radical SAM domain protein [Desulfovibrio salexigens DSM 2638] gi|242120534|gb|ACS78230.1| Radical SAM domain protein [Desulfovibrio salexigens DSM 2638] Length = 328 Score = 40.3 bits (93), Expect = 0.56, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 67/193 (34%), Gaps = 30/193 (15%) Query: 124 CSLTCSFCYTGTQKL---VRNLT--AEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 CS+ C +C G L R++ A EIL ++ + P Sbjct: 29 CSMDCVYCEVGKTDLLTGERDVYVPAAEILRELENWKQEGHQPPEF-------------- 74 Query: 179 ISNIVMMGMGEPLCN--FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236 I + G+GEP N V + + S +T +T+ P + + E Sbjct: 75 ---ITLGGLGEPTLNSEMPEVIRGIKKL----FPSMPVAVLTNATAMTDPEVRKELLEAD 127 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 V+L V+++ R + + + A + N +I E ++ +G NDS Sbjct: 128 VVLPSMDSLVASEFRA-INRPCKGTDPTAIAKALIEFRKEFNG-KIFLEVLLSRGYNDSD 185 Query: 297 RDALNLIKILKGI 309 + + + Sbjct: 186 ENLSLMKDFCSKL 198 >gi|291534245|emb|CBL07358.1| Pyruvate-formate lyase-activating enzyme [Megamonas hypermegale ART12/1] Length = 412 Score = 40.3 bits (93), Expect = 0.57, Method: Composition-based stats. Identities = 41/240 (17%), Positives = 80/240 (33%), Gaps = 41/240 (17%) Query: 116 LCVSSQVGC----SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMV 171 +C ++ GC C K T +EI Q+ G + + ++ Sbjct: 185 VCNANCFGCISLQPAECCPSPQSRIKFRP--TPKEI-AQI-------GIYHLETAPDAII 234 Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST-SGFVPNIAR 230 G + GEP DN+ ++ K +I ++T +G+ I R Sbjct: 235 SFGQGCE---------GEPSLAVDNIVPAIEKIRKKTD----KGQININTNAGYTEGIKR 281 Query: 231 VGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 + + +S+ + + + Y L+ + ++ R+ + I+ + Sbjct: 282 IVNAGLDSMRVSIISAIPENYKAYYRGS--YELDNVKESIRY--AHEHGVHISLNMLYFP 337 Query: 291 GINDSPRDALNLIKILKGIPAKINLIP---FNPWPG--CEYLCSDQKDI--VTFSECIKR 343 G NDS + + L P +N+I N P E + K I F + Sbjct: 338 GFNDSESEFKAWKEFLHENP--VNMIQIRNLNIDPDAFAEIMPPFTKAIGTKEFIRQLHE 395 >gi|224371625|ref|YP_002605789.1| putative Fe-S oxidoreductase [Desulfobacterium autotrophicum HRM2] gi|223694342|gb|ACN17625.1| putative Fe-S oxidoreductase [Desulfobacterium autotrophicum HRM2] Length = 316 Score = 40.3 bits (93), Expect = 0.57, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 71/227 (31%), Gaps = 34/227 (14%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 CSL C +C G T + L E S I Sbjct: 28 CSLDCIYCECGK-------TTD------LTVERKEYVPVDAVLAELEDYFSNHPDPDFIT 74 Query: 184 MMGMGEPLCNF--DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VGEEIGVML 239 G GEP N +V + + S +T T P + + +G ++ VM Sbjct: 75 FSGSGEPCLNLRIKDVIDFIKTRKP----NVSIAVLTNGTLLNDPEVRKSILGADL-VMP 129 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 ++ S+ R + + ID + + R E +L G ND+P + Sbjct: 130 SLDGAMPSSLRR--INRPHPSINATTYIDGLVAFRAEFHG-RFALEIFILPGYNDTPEEL 186 Query: 300 LNLIKILKGIPAKINLIPFN--PWPGC--EYLCSDQK---DIVTFSE 339 L ++ I I I N PG S ++ I F + Sbjct: 187 QALKAAVERIQPDI--IQLNTLDRPGVVPNIHASTRESLDQIAAFFK 231 >gi|256545760|ref|ZP_05473116.1| pyruvate formate-lyase activating enzyme [Anaerococcus vaginalis ATCC 51170] gi|256398456|gb|EEU12077.1| pyruvate formate-lyase activating enzyme [Anaerococcus vaginalis ATCC 51170] Length = 320 Score = 40.3 bits (93), Expect = 0.58, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 47/127 (37%), Gaps = 18/127 (14%) Query: 211 SFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKY----PLEML 266 S + T G+ P + + I + + L + + P+ KY E + Sbjct: 162 HMSGINTAIETCGYTP--RKSLDLIKDHVDLFLFDI-----KQMDPVKHKYWTGVNNERI 214 Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKIN-----LIPFNPW 321 + R+ R+ +LKG+NDS + ++ L+ N L+P++ + Sbjct: 215 LSNLRYLLECGKKVRVRMP--ILKGVNDSHEEIKAVVDFLEDFKCFKNFDGIDLLPYHRY 272 Query: 322 PGCEYLC 328 +Y Sbjct: 273 GVGKYEQ 279 >gi|325969719|ref|YP_004245911.1| Fe-S oxidoreductase [Vulcanisaeta moutnovskia 768-28] gi|323708922|gb|ADY02409.1| Fe-S oxidoreductase [Vulcanisaeta moutnovskia 768-28] Length = 310 Score = 40.3 bits (93), Expect = 0.58, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 73/186 (39%), Gaps = 25/186 (13%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+ C +C R++ +L +P + I+ + I + R + Sbjct: 28 CNFNCIYC---QLGRTRHV-----------INNLRMFYPPEDIIKELEIATRTRNYDYLT 73 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG---FVPNIARVGEEIGVMLA 240 +G GEP + + K + A ++ + + + T+G I E+ V + Sbjct: 74 FIGDGEPTL-YAGLGKLIQWARNNQ-----DKPLAILTNGAKLIDEGIRTWLSELDV-VK 126 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +S A + ++ +R+ + ++ + + + + I E ++++G+ND+ + Sbjct: 127 VSTDAGNEKTFRLINRPHREITFDRFVEGIERFREVFSGQ-IWTEIMLVQGVNDNEDEIE 185 Query: 301 NLIKIL 306 + L Sbjct: 186 RIGDAL 191 >gi|150015587|ref|YP_001307841.1| glycyl-radical activating family protein [Clostridium beijerinckii NCIMB 8052] gi|149902052|gb|ABR32885.1| glycyl-radical enzyme activating protein family [Clostridium beijerinckii NCIMB 8052] Length = 300 Score = 40.3 bits (93), Expect = 0.58, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 62/171 (36%), Gaps = 33/171 (19%) Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLS------TSGFVPNIARVGEEIGV 237 + GE +V + D M S +TLS F + +V +E + Sbjct: 101 LSAEGE-FLTLSHVMN--EVMKDEMFYEESNGGVTLSGGEVLMHHEFASQLLKVLKEKNI 157 Query: 238 MLAIS---------LHAVSNDL-----------RNILVPINRKYPLEMLIDACRHYPGLS 277 I + +D+ R + Y +++I+ + + Sbjct: 158 HTTIETTGYTSNEIFSSFIDDVDLLLFDIKHYDREKHFKVTNVYN-DLIIENLK--IAID 214 Query: 278 NARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEYL 327 N + + ++ IN S DA K+L+ + A KINL+PF+ + +Y Sbjct: 215 NGKDVIIRIPVIPNINSSLEDAKGFCKLLESVNAKKINLLPFHQFGQKKYE 265 >gi|182419316|ref|ZP_02950569.1| heme biosynthesis [Clostridium butyricum 5521] gi|237667748|ref|ZP_04527732.1| radical SAM domain protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376956|gb|EDT74527.1| heme biosynthesis [Clostridium butyricum 5521] gi|237656096|gb|EEP53652.1| radical SAM domain protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 453 Score = 40.3 bits (93), Expect = 0.59, Method: Composition-based stats. Identities = 31/195 (15%), Positives = 69/195 (35%), Gaps = 21/195 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 +C++ GC+L C +C+ + + V+ + I+ ++ S Sbjct: 96 AICLNVIHGCNLRCKYCFADEGEYHGH-------GGVMSVE------TAKKAIDYVIKRS 142 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM---GLSFSKRRITLSTSGFVPNIARV 231 RK I + G GEP D +K+ + A D+ G T +T + + Sbjct: 143 GPRKNIEIDLFG-GEPTLIMDKIKEIIKYARDNEEKWGKRIRFTMTTNATLLTPEMMDYM 201 Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG-LSNARRITFEYVML 289 E ++L++ ND N+ + ++ + +I + + + Sbjct: 202 DKEMGNIILSLDGRKEVND--NVRIKPDKSGSYDDIIPNIKEMIKRRTPGKTYYVRGTFT 259 Query: 290 KGINDSPRDALNLIK 304 + D D + ++ Sbjct: 260 RDNTDFYEDVMAMVN 274 >gi|190347148|gb|EDK39369.2| hypothetical protein PGUG_03467 [Meyerozyma guilliermondii ATCC 6260] Length = 696 Score = 40.3 bits (93), Expect = 0.59, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 41/124 (33%), Gaps = 13/124 (10%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDF----QGMSDIS-----QE 59 + M EELE L+ + R ++K +Y + F + + + E Sbjct: 100 IRDMDYEELEALLVSWRDSNIPQKRR---LFKLVYGLTVTTFIQCLDDLHNEAIGFPNAE 156 Query: 60 VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119 R L F + DG+ +L A +G V +RG CV Sbjct: 157 KREKLYNEFEPDEFRYTMMEHPADGSELYL-PVDALIVGSGSGAGVVAETLSNRGFKCVV 215 Query: 120 SQVG 123 + G Sbjct: 216 LEKG 219 >gi|146416233|ref|XP_001484086.1| hypothetical protein PGUG_03467 [Meyerozyma guilliermondii ATCC 6260] Length = 696 Score = 40.3 bits (93), Expect = 0.59, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 41/124 (33%), Gaps = 13/124 (10%) Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDF----QGMSDIS-----QE 59 + M EELE L+ + R ++K +Y + F + + + E Sbjct: 100 IRDMDYEELEALLVSWRDSNIPQKRR---LFKLVYGLTVTTFIQCLDDLHNEAIGFPNAE 156 Query: 60 VRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS 119 R L F + DG+ +L A +G V +RG CV Sbjct: 157 KREKLYNEFEPDEFRYTMMEHPADGSELYL-PVDALIVGSGSGAGVVAETLSNRGFKCVV 215 Query: 120 SQVG 123 + G Sbjct: 216 LEKG 219 >gi|209518779|ref|ZP_03267593.1| Radical SAM domain protein [Burkholderia sp. H160] gi|209500749|gb|EEA00791.1| Radical SAM domain protein [Burkholderia sp. H160] Length = 376 Score = 40.3 bits (93), Expect = 0.60, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 51/138 (36%), Gaps = 6/138 (4%) Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 R+ L + L V+ +R ++P P+ ++A + +++ Y+ Sbjct: 230 FERMKASGIDTLGMHLEVVTPAVRARVMPGKASVPISRYMEAFEAAVAVFGRGQVS-TYI 288 Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYS 347 + G+ D+ L++ + L I ++PF P G + G Sbjct: 289 L-AGLGDTAEAILSISRELIDIGVYPFVVPFVPISGTPLEDHPAPAAEFMKSILAPLG-- 345 Query: 348 SPIR--TPRGLDILAACG 363 + +R R DI A CG Sbjct: 346 AMLREAKMRSADIKAGCG 363 >gi|169349840|ref|ZP_02866778.1| hypothetical protein CLOSPI_00578 [Clostridium spiroforme DSM 1552] gi|169293408|gb|EDS75541.1| hypothetical protein CLOSPI_00578 [Clostridium spiroforme DSM 1552] Length = 249 Score = 40.3 bits (93), Expect = 0.60, Method: Composition-based stats. Identities = 31/242 (12%), Positives = 76/242 (31%), Gaps = 48/242 (19%) Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC L C +C+ + E +E + Sbjct: 30 HGCPLRCKYCHNPD---------------TWANSKETMEMTPQEALEKALKYKTYWGNEG 74 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEEIG 236 + + GEPL D + + +A + TSG P + E + Sbjct: 75 GITISGGEPLLQIDFLIELFKLAKKE------GVNTCIDTSGANFTREEPFFNKFNELMK 128 Query: 237 VM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 L + + + + L P + ++D ++ ++ + + +V++ GI+D Sbjct: 129 YTDLLLLDIKHIDSQKHKELTGK----PNDNILDMAKYLSDINKS--VWIRHVLVPGISD 182 Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSEC 340 + L K + + K+ ++P++ ++ Q+ + ++ Sbjct: 183 VDEYLIELDKFISSLNNVKKVEVLPYHTLGTFKWEELNIPYQLEGVNPPSQERVDNANKL 242 Query: 341 IK 342 + Sbjct: 243 LH 244 >gi|229089571|ref|ZP_04220838.1| hypothetical protein bcere0021_4180 [Bacillus cereus Rock3-42] gi|300119070|ref|ZP_07056781.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus SJ1] gi|228693787|gb|EEL47483.1| hypothetical protein bcere0021_4180 [Bacillus cereus Rock3-42] gi|298723686|gb|EFI64417.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus SJ1] gi|324324548|gb|ADY19808.1| pyruvate formate-lyase-activating enzyme [Bacillus thuringiensis serovar finitimus YBT-020] Length = 243 Score = 40.3 bits (93), Expect = 0.60, Method: Composition-based stats. Identities = 40/243 (16%), Positives = 76/243 (31%), Gaps = 50/243 (20%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C +C+ N EI + +P + I Sbjct: 28 GCLLRCQYCH--------NADTWEI------GKGKEITVEEVMQDVTCYLPFIEASGGGI 73 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--------FVPNIARVGEE 234 + G GEPL D + + + + T+ +SG F + + E Sbjct: 74 TVSG-GEPLLQLDFL---IELFKKCKEIGI---HTTIDSSGGCYSEEPEFQNKLDILMEY 126 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 ++L H S R + N I Y N I +V++ G+ D Sbjct: 127 TDLVLLDLKHIDSKKHRKLTGKPN------EHILQFARYLSDKNK-PIWVRHVLVPGVTD 179 Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWP-------GCEY-----LCSDQKDIVTFSEC 340 + D L ++ + K+ ++P++ G +Y +K++ Sbjct: 180 NEEDLQKLSSFIQSLSNVQKVEVLPYHKLGVYKWEALGHKYPLANVEPPTEKNVEEARHI 239 Query: 341 IKR 343 ++ Sbjct: 240 LQA 242 >gi|257887678|ref|ZP_05667331.1| formate acetyltransferase activating enzyme [Enterococcus faecium 1,141,733] gi|257823732|gb|EEV50664.1| formate acetyltransferase activating enzyme [Enterococcus faecium 1,141,733] Length = 253 Score = 39.9 bits (92), Expect = 0.61, Method: Composition-based stats. Identities = 43/275 (15%), Positives = 90/275 (32%), Gaps = 56/275 (20%) Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEIL 148 + IG IET + V Q GC + C FC+ T + +A+E+L Sbjct: 1 MEEKTIGYVHSIETFGSVDGPGLRFVVFMQ-GCRMRCQFCHNPDTWNIGGGKEYSADELL 59 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 + R GD G I + G GEPL D + + A + Sbjct: 60 DKAERFRPYWGDKGG------------------ITVSG-GEPLLQIDFLIELFKKAKERE 100 Query: 209 GLSFSKRRITLSTSGFV-----PNIARVGEEIGVM--LAISLHAVSNDLRNILVPINRKY 261 TL T G P +R E + L + + N+ L + Sbjct: 101 ------MHTTLDTCGKPFTYEDPFFSRFQELMKYTDLLLFDIKHIDNEEHKKLT----HW 150 Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFN 319 E +++ ++ ++ + +V++ +D + L ++ + ++ ++P++ Sbjct: 151 DNENILEMAQYLSKINK--PVWIRHVLVPERSDYDEYLIRLDNFIQTLSNVDRVEILPYH 208 Query: 320 PWPGCEY------------LCSDQKDIVTFSECIK 342 ++ ++ + + Sbjct: 209 TMGKYKWETLGLKYPLEGIEPPTKERVENAKRLLH 243 >gi|157961496|ref|YP_001501530.1| pyruvate formate lyase-activating enzyme 1 [Shewanella pealeana ATCC 700345] gi|157846496|gb|ABV86995.1| pyruvate formate-lyase activating enzyme [Shewanella pealeana ATCC 700345] Length = 246 Score = 39.9 bits (92), Expect = 0.62, Method: Composition-based stats. Identities = 36/249 (14%), Positives = 81/249 (32%), Gaps = 56/249 (22%) Query: 123 GCSLTCSFCYTGT-----QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C+ + ++++ Q++ R P E G V S G Sbjct: 29 GCLMRCLYCHNRDTWDLHGGKE--MKVDDLMSQIISYR------PFLEASGGGVTASGGE 80 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV----PNIARVGE 233 I + + K+ G+ L T+GFV P I + + Sbjct: 81 AIIQADFVA---------ELFKACK----KEGI-----HTCLDTNGFVRKHTPIIDELLD 122 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 ++ + + + + L ++ + + H ++ YV++ G Sbjct: 123 NTD-LVMLDIKQIDDAKHIDLTNVSN----QRTLQFAEHL--HKRGQKAWIRYVVVGGYT 175 Query: 294 DSPRDALNLIKILKGIPA--KINLIPFN-------PWPGCEYL-----CSDQKDIVTFSE 339 D A L + ++ + K+ L+P++ G +Y + + + Sbjct: 176 DDIPSAQALAEFIQPMKNVEKVELLPYHELGKHKWEAMGMDYELNNISPPSTETMEQIKK 235 Query: 340 CIKRSGYSS 348 G ++ Sbjct: 236 VFTDMGMNA 244 >gi|257898809|ref|ZP_05678462.1| formate acetyltransferase activating enzyme [Enterococcus faecium Com15] gi|293570288|ref|ZP_06681357.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium E980] gi|257836721|gb|EEV61795.1| formate acetyltransferase activating enzyme [Enterococcus faecium Com15] gi|291609695|gb|EFF38956.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium E980] Length = 253 Score = 39.9 bits (92), Expect = 0.63, Method: Composition-based stats. Identities = 43/275 (15%), Positives = 90/275 (32%), Gaps = 56/275 (20%) Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEIL 148 + IG IET + V Q GC + C FC+ T + +A+E+L Sbjct: 1 MEEKTIGYVHSIETFGSVDGPGLRFVVFMQ-GCRMRCQFCHNPDTWNIGGGKEYSADELL 59 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 + R GD G I + G GEPL D + + A + Sbjct: 60 DKAERFRPYWGDKGG------------------ITVSG-GEPLLQIDFLIELFKKAKERE 100 Query: 209 GLSFSKRRITLSTSGFV-----PNIARVGEEIGVM--LAISLHAVSNDLRNILVPINRKY 261 TL T G P +R E + L + + N+ L + Sbjct: 101 ------MHTTLDTCGKPFTYEEPFFSRFQELMKYTDLLLFDIKHIDNEEHKKLT----HW 150 Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFN 319 E +++ ++ ++ + +V++ +D + L ++ + ++ ++P++ Sbjct: 151 DNENILEMAQYLSKINK--PVWIRHVLVPERSDYDEYLIRLDNFIQTLSNVDRVEILPYH 208 Query: 320 PWPGCEY------------LCSDQKDIVTFSECIK 342 ++ ++ + + Sbjct: 209 TMGKYKWETLGLKYPLEGIEPPTKERVENAKRLLH 243 >gi|254785629|ref|YP_003073058.1| nitrogenase cofactor biosynthesis protein NifB [Teredinibacter turnerae T7901] gi|237686986|gb|ACR14250.1| nitrogenase cofactor biosynthesis protein NifB [Teredinibacter turnerae T7901] Length = 498 Score = 39.9 bits (92), Expect = 0.63, Method: Composition-based stats. Identities = 31/210 (14%), Positives = 79/210 (37%), Gaps = 33/210 (15%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C +C N + ++ ++L P ++ + + +++ + Sbjct: 62 CNIQCHYCNRKYD--CSNESRPGVVSELLT--------PEQAVMKVRAVAANIPQMTVLG 111 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVMLAI 241 + G G+PL N + + + S+ ++ +ST+G ++ + + + I Sbjct: 112 IAGPGDPLANPERTFSTFRMLSEQT----PDIKLCVSTNGLALPESVEELAKHNIDHVTI 167 Query: 242 SLHAVSNDLRNILVPI----NRKYP--------LEMLIDACRHYPGLSNARRITFEYVML 289 +++ V ++ + P NR+ +E + VM+ Sbjct: 168 TINTVDPEIGAKIYPWIYWNNRRIRGVKGAKILIEQQQKGLEMLTER--GILVKVNSVMI 225 Query: 290 KGINDSPRDALNLIKILKGIPAKI-NLIPF 318 G+ND + +I+K A + N++P Sbjct: 226 PGVND--DHLKEVSRIVKQKGAFLHNVMPL 253 >gi|328676803|gb|AEB27673.1| Lysine 2,3-aminomutase [Francisella cf. novicida Fx1] Length = 328 Score = 39.9 bits (92), Expect = 0.63, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 73/217 (33%), Gaps = 48/217 (22%) Query: 110 EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169 K G + + +Q+ C++ C +C+ N+ PG +D Sbjct: 97 HKYHGRVLLIAQISCAVHCRYCFRKEFDYKENI-------------------PGRKDWSK 137 Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKS----LSIASDSMGLSF-SKRRITLSTSGF 224 + V++ G+PL N D + + + L S+ + L Sbjct: 138 AFEYIANDQSIEEVILSGGDPLLNNDEILEFFIENIQQIVHIKRLRIHSRIPVVLPERMT 197 Query: 225 VPNIARVGEE-IGVMLAISLHAVS--NDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281 + + E + +L I ++ + + + ++ KY + +L + Sbjct: 198 TKLLKILSEHRLDTVLVIHVNHPNELDGNVSKILKEIHKYGIIILNQS------------ 245 Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318 +LK IND L L I AK+ IP+ Sbjct: 246 -----TLLKDINDDANVLYALSTKL--INAKV--IPY 273 >gi|167629214|ref|YP_001679713.1| nifb [Heliobacterium modesticaldum Ice1] gi|167591954|gb|ABZ83702.1| nifb [Heliobacterium modesticaldum Ice1] Length = 277 Score = 39.9 bits (92), Expect = 0.63, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 84/233 (36%), Gaps = 33/233 (14%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C +C N + + +V+ L +E + +G ++ + Sbjct: 40 CNIGCGYCVRKFD--CANESRPGVTSRVITPEQALW------RVEQALASDIGPYLNVVG 91 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGV-MLAI 241 + G GEPL N +N K+ + + S +S++G + ++ V + + Sbjct: 92 IAGPGEPLAN-ENTFKTFRLIQEHYPHLIS----CVSSNGLLLADRLDDLVKLNVSHITV 146 Query: 242 SLHAVSNDLRNILVPINRKYP------------LEMLIDACRHYPGLSNARRITFEYVML 289 +++ V + + R +E +D + R + V++ Sbjct: 147 TMNTVDPAIGARIYRHVRYQGQRLTGEAGAALLIERQLDGIER--AAAAGRTVKVNTVVI 204 Query: 290 KGINDSPRDALNLIKILKGIPAK-INLIPF-NPWPGCEYLCSDQKDIVTFSEC 340 G+ND L + +K A+ +NL+P N +++ + + Sbjct: 205 PGLNDDK--VATLAREVKRRGARLLNLMPLINQGDFADWVPPTPALLQKLQQI 255 >gi|78189217|ref|YP_379555.1| nitrogenase cofactor biosynthesis protein NifB [Chlorobium chlorochromatii CaD3] gi|78171416|gb|ABB28512.1| Nitrogenase cofactor biosynthesis protein NifB [Chlorobium chlorochromatii CaD3] Length = 423 Score = 39.9 bits (92), Expect = 0.63, Method: Composition-based stats. Identities = 22/177 (12%), Positives = 61/177 (34%), Gaps = 28/177 (15%) Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVML 239 + + G G+P N D ++L + + + ++T+G +P I + + Sbjct: 78 VGIAGPGDPFANPDETMETLRLVRAKY----PEMLLCVATNGLDLLPYIDELARLQVSHV 133 Query: 240 AISLHAVSNDLRNILVPINRKYP------------LEMLIDACRHYPGLSNARRITFEYV 287 I+++A+ ++ + R + ++A + + + Sbjct: 134 TITINAIDPEIGQEIYAWVRYNKKMYRGKDAAKVLINNQLEALKRLKEV--GVTAKVNSI 191 Query: 288 MLKGINDS--PRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFSE 339 ++ GIND+ A + ++ I N +P+ + + + + Sbjct: 192 IIPGINDAHVITVASKVAELGADIL---NCLPYYNTKETVFENIDEPSPELVFEIQK 245 >gi|331269245|ref|YP_004395737.1| Radical SAM domain-containing protein [Clostridium botulinum BKT015925] gi|329125795|gb|AEB75740.1| Radical SAM domain protein [Clostridium botulinum BKT015925] Length = 456 Score = 39.9 bits (92), Expect = 0.64, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 74/196 (37%), Gaps = 21/196 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC++ C+L C +C+ K AR ++ G + I+ ++ S Sbjct: 96 ALCLNVTHDCNLRCKYCFADEGKYHG-------------ARKVMSPEVGKKAIDFVIAHS 142 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV--- 231 RK + + G GEPL +K+ +S A + + R T++T+ + N + Sbjct: 143 GPRKNIEVDLFG-GEPLIAIKEIKEIISYAREQEKIHNKVIRFTMTTNALLLNDEIMEYM 201 Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVML 289 E ++L+I SND I V + Y + ++ + + + Sbjct: 202 DKEMGNIVLSIDGRKESNDNTRIRVDGSGTY--DAILPKIKEMVDKRDKSKQYYVRGTFT 259 Query: 290 KGINDSPRDALNLIKI 305 + D D +L + Sbjct: 260 RDNTDFYYDVKHLADL 275 >gi|288961972|ref|YP_003452282.1| pyruvate formate lyase activating enzyme [Azospirillum sp. B510] gi|288914252|dbj|BAI75738.1| pyruvate formate lyase activating enzyme [Azospirillum sp. B510] Length = 272 Score = 39.9 bits (92), Expect = 0.64, Method: Composition-based stats. Identities = 43/210 (20%), Positives = 71/210 (33%), Gaps = 34/210 (16%) Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC L C +C+ T T+ EIL + L L G + G Sbjct: 58 GCPLRCLYCHNPDTQHMHDGTRTTSTEILEDIALYAEFLKRAHGGLTLSG---------- 107 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 GEPL + I + L L TSGF+ N A V L Sbjct: 108 --------GEPLVQPEFTAA---ILRGAKALGL---HTALDTSGFLGNHADDLLLEDVDL 153 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 + ++ PL ++ GL+ RI YV++ G+ D + Sbjct: 154 VLLDIKAFSE---KTYRPLTGVPLRPTLEFAERLAGLNK--RIWLRYVLVPGLTDDAAEI 208 Query: 300 LNLIKILKGIPA--KINLIPFNPWPGCEYL 327 L + G+ +++++PF+ ++ Sbjct: 209 DGLADFVAGLGVVDRVDVLPFHKMGEHKWK 238 >gi|295680484|ref|YP_003609058.1| radical SAM protein [Burkholderia sp. CCGE1002] gi|295440379|gb|ADG19547.1| Radical SAM domain protein [Burkholderia sp. CCGE1002] Length = 376 Score = 39.9 bits (92), Expect = 0.64, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 12/141 (8%) Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 R+ L + L VS ++R ++P P+ ++A R + +++ Y+ Sbjct: 230 FERMRASGIDTLGMHLEVVSPEVRARVMPGKASVPISRYMEAFRAAVAVFGKGQVS-TYI 288 Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFSECIKRS 344 + G+ D+ L++ + L I ++PF P G + + + Sbjct: 289 L-AGLGDTAEAILSISRELIDIGVYPFVVPFVPISGTPLEDHPAPTPEFM---KSILAPL 344 Query: 345 GYSSPIRTP--RGLDILAACG 363 G + +R R DI A CG Sbjct: 345 G--AMLRDAKMRSADIKAGCG 363 >gi|153939858|ref|YP_001392342.1| radical SAM domain-containing protein [Clostridium botulinum F str. Langeland] gi|152935754|gb|ABS41252.1| radical SAM domain protein [Clostridium botulinum F str. Langeland] gi|295320334|gb|ADG00712.1| radical SAM domain protein [Clostridium botulinum F str. 230613] Length = 455 Score = 39.9 bits (92), Expect = 0.64, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 73/195 (37%), Gaps = 21/195 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC++ C+L C +C+ + R L+ G + I+ ++ S Sbjct: 96 ALCLNIAHDCNLRCKYCFADEGEYKG-------------KRELMSPGVGKKAIDFVIEKS 142 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV--- 231 RK + + G GEPL F +K+ + A + R T++T+G + N + Sbjct: 143 GPRKNIEVDLFG-GEPLMAFSTIKEIVEYAKEKEEKHNKTIRFTMTTNGTLLNQEIMEYL 201 Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 ++L+I ND + V + Y + ++ + + + + + Sbjct: 202 DKNMGNIVLSIDGRKEINDNVRVRVDGSGSY--DSILPKIKKMVEMRDKTKQYYARGTFT 259 Query: 291 GIN-DSPRDALNLIK 304 N D D +++ Sbjct: 260 RENLDFFEDVMHMAN 274 >gi|121605004|ref|YP_982333.1| radical SAM domain-containing protein [Polaromonas naphthalenivorans CJ2] gi|120593973|gb|ABM37412.1| Radical SAM domain protein [Polaromonas naphthalenivorans CJ2] Length = 362 Score = 39.9 bits (92), Expect = 0.64, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 53/143 (37%), Gaps = 16/143 (11%) Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 R+ + L + L V+ +LR ++P P+ + A + +++ Y+ Sbjct: 213 FQRMRDAGIDTLGMHLEVVTPELRARIMPGKATVPISRYMAAFEASVRVFGRGQVS-TYI 271 Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFSECI--- 341 + G+ D+P L++ L + ++PF P G + E + Sbjct: 272 L-AGLGDTPEAILSISGQLLALGVYPFVVPFVPISGTPLEDHPAPPADFMKALLEPLGAM 330 Query: 342 -KRSGYSSPIRTPRGLDILAACG 363 R+G R DI A CG Sbjct: 331 VARAGL-------RANDIKAGCG 346 >gi|332797084|ref|YP_004458584.1| Wyosine base formation domain-containing protein [Acidianus hospitalis W1] gi|332694819|gb|AEE94286.1| Wyosine base formation domain protein [Acidianus hospitalis W1] Length = 367 Score = 39.9 bits (92), Expect = 0.65, Method: Composition-based stats. Identities = 36/207 (17%), Positives = 64/207 (30%), Gaps = 19/207 (9%) Query: 110 EKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQV-LLARSLLGDFPGC- 164 E R + C C C+ L + T I +A + + Sbjct: 65 ESHRCVQMTPTAAWCWFRCIHCWRLEPEDIGLEWDETKLPITDDPEYIAEKSIEEHKRAV 124 Query: 165 -----EDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITL 219 + K +++ + GEP +D + + + GL L Sbjct: 125 SGYLGRKGVDPNMAKEAMKPAHVAISLTGEPTL-YDRLGELIHE-YHKRGL-----TTFL 177 Query: 220 STSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279 TSG P++ EE L +S+ A + ++ + + P S Sbjct: 178 VTSGVRPDVLASLEEEPTQLFVSIQAPNERKHKLINRPIVANSWNLFLKTLEILPSFS-- 235 Query: 280 RRITFEYVMLKGINDSPRDALNLIKIL 306 M+KG N S DA + K++ Sbjct: 236 SPTVIRMTMIKGFNMSEEDAKDFAKLI 262 >gi|320354470|ref|YP_004195809.1| hypothetical protein Despr_2377 [Desulfobulbus propionicus DSM 2032] gi|320122972|gb|ADW18518.1| Protein of unknown function DUF2344 [Desulfobulbus propionicus DSM 2032] Length = 846 Score = 39.9 bits (92), Expect = 0.65, Method: Composition-based stats. Identities = 55/263 (20%), Positives = 87/263 (33%), Gaps = 50/263 (19%) Query: 106 VYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKL-VRNLTAEEILLQVLLARSLLGDFPGC 164 V P R L V GC+ C FC G VR T EEI+ + Sbjct: 253 VVNPVHDR--LGVEIARGCTRGCRFCQAGMTYRPVRERTLEEIM-----------ELANQ 299 Query: 165 EDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL--SIASDSMGLSFSKRRITLSTS 222 +S + E + +L A D + +S R+ T Sbjct: 300 GIAHSGFEELALLSLSTGDFSCLAE-------LMGALMDRFADDFVSVSMPSMRVGTLTP 352 Query: 223 GFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI 282 + I RV + G +A A ++ LR ++ N+ + L+ CR L ++ Sbjct: 353 EIMEQIKRV-RKTGFTVAPE--AGTDRLREVI---NKGISEQDLLATCRDAFAL--GWKL 404 Query: 283 TFEYVMLKGINDSPRDAL---NLIKIL-------KGIPAKINL--IPFNPWPGCEYL--- 327 Y M+ ++ D L K KG P ++NL F P P + Sbjct: 405 IKLYFMVGLPTETEDDVDGIIALAKKARAQVGQGKGRPVQVNLGVATFVPKPHTPFQWEG 464 Query: 328 ----CSDQKDIVTFSECIKRSGY 346 ++ I + + R GY Sbjct: 465 QLSLEESKQRINRLKQLLPRQGY 487 >gi|320335583|ref|YP_004172294.1| hypothetical protein Deima_3000 [Deinococcus maricopensis DSM 21211] gi|319756872|gb|ADV68629.1| protein of unknown function DUF512 [Deinococcus maricopensis DSM 21211] Length = 489 Score = 39.9 bits (92), Expect = 0.65, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 58/152 (38%), Gaps = 10/152 (6%) Query: 199 KSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPIN 258 KSL I D LSF T+ ++ R+ E L +S+H + DLR ++ Sbjct: 134 KSLYIMDDDYRLSFLYGSFVTLTNLTEQDVNRILNENLSPLYVSVHTANQDLRADMMKWW 193 Query: 259 RKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318 + + R + + + V+L G ND ++ L P N+I Sbjct: 194 KLKVKDEKATQIRDMIERLESIDLYTQVVLLPGRNDG-EHFDETLEYLASRP---NVISV 249 Query: 319 NPWP-GCEYLCSDQKDIVTF-----SECIKRS 344 P G ++ ++ TF + ++R+ Sbjct: 250 ACVPVGLTDHRTNLAEVRTFTRDEARDVLRRA 281 >gi|294778024|ref|ZP_06743458.1| glycyl-radical enzyme activating family protein [Bacteroides vulgatus PC510] gi|294448082|gb|EFG16648.1| glycyl-radical enzyme activating family protein [Bacteroides vulgatus PC510] Length = 302 Score = 39.9 bits (92), Expect = 0.65, Method: Composition-based stats. Identities = 14/106 (13%), Positives = 35/106 (33%), Gaps = 19/106 (17%) Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK---INLIPF 318 P E++++ R +++G+N ++ + L +P INL+P+ Sbjct: 197 PNELILENIRRVAEAD--FPYYIRIPLIEGVNADEKNIKLSAEFLASLPRHPEIINLLPY 254 Query: 319 NPW--------------PGCEYLCSDQKDIVTFSECIKRSGYSSPI 350 + G + ++ + + G + I Sbjct: 255 HDIGKGKHAKLGSIYNPKGYKMQTPSEEVQQQCIQILTDYGLKATI 300 >gi|293364736|ref|ZP_06611453.1| pyruvate formate-lyase activating enzyme [Streptococcus oralis ATCC 35037] gi|306830171|ref|ZP_07463355.1| pyruvate formate-lyase activating enzyme [Streptococcus mitis ATCC 6249] gi|307702983|ref|ZP_07639930.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus oralis ATCC 35037] gi|322375831|ref|ZP_08050342.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sp. C300] gi|331265653|ref|YP_004325283.1| pyruvate-formate lyase activating enzyme [Streptococcus oralis Uo5] gi|291316186|gb|EFE56622.1| pyruvate formate-lyase activating enzyme [Streptococcus oralis ATCC 35037] gi|304427697|gb|EFM30793.1| pyruvate formate-lyase activating enzyme [Streptococcus mitis ATCC 6249] gi|307623376|gb|EFO02366.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus oralis ATCC 35037] gi|321279099|gb|EFX56141.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus sp. C300] gi|326682325|emb|CBY99942.1| pyruvate-formate lyase activating enzyme [Streptococcus oralis Uo5] Length = 264 Score = 39.9 bits (92), Expect = 0.65, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 69/214 (32%), Gaps = 35/214 (16%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C +C+ N + E + I Sbjct: 37 GCHMRCQYCH--------NPDTWAM-----ETNKSRERTVDDVLTEALRYRGFWGDKGGI 83 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEEIGV 237 + G GE L D + +L + G+ TL T + + + + V Sbjct: 84 TVSG-GEALLQIDFLI-ALFTKAKEKGI-----HCTLDTCALPFRNKPRYLEKFNKLMAV 136 Query: 238 M--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 + + + ++ + I+ K I AC Y + + +V++ G+ D Sbjct: 137 TDLVLLDIKEINEEQHKIVTSQTNKN-----ILACAQYLS-DIGKPVWIRHVLVPGLTDR 190 Query: 296 PRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327 D + L K +K + K ++P++ ++ Sbjct: 191 DEDLIELGKFVKTLKNVDKFEILPYHTMGEFKWR 224 >gi|210630236|ref|ZP_03296326.1| hypothetical protein COLSTE_00210 [Collinsella stercoris DSM 13279] gi|210160562|gb|EEA91533.1| hypothetical protein COLSTE_00210 [Collinsella stercoris DSM 13279] Length = 272 Score = 39.9 bits (92), Expect = 0.66, Method: Composition-based stats. Identities = 33/241 (13%), Positives = 72/241 (29%), Gaps = 34/241 (14%) Query: 96 CIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR 155 G IE++ + V +Q GC + C++C+ Sbjct: 17 ATGRVHSIESMGTVDGPGVRFVVFTQ-GCPMRCAYCHNPD---------------TWAVG 60 Query: 156 SLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIAS-DSMGLSFSK 214 S G E I + + + + GEPL + V + + G + Sbjct: 61 SGAGTSVTVERIIDEFESNRPFYRTGGITVTGGEPLLQPEFVGDLFAAMHANPNG----R 116 Query: 215 RRITLSTSGFVPNIARVGEEIGVMLAISL-----HAVSNDLRNILVPINRKYPLEMLIDA 269 L + G+ N + V+ L + L + ++ Sbjct: 117 VHTCLDSCGYAYNPKKPARFDKVLAQTDLVLLDIKHSDPEGHKALTRCAP----DNILAF 172 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINL--IPFNPWPGCEYL 327 ++ +V++ GI D+ + L +++ + L +P++ +Y Sbjct: 173 GDELARR--GVKVVIRHVIVPGITDTEEECEALGRLIAPWHNVVGLEMLPYHTMGIVKYE 230 Query: 328 C 328 Sbjct: 231 Q 231 >gi|261207618|ref|ZP_05922303.1| formate acetyltransferase activating enzyme [Enterococcus faecium TC 6] gi|289565130|ref|ZP_06445583.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium D344SRF] gi|294614807|ref|ZP_06694702.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium E1636] gi|294617486|ref|ZP_06697117.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium E1679] gi|260078001|gb|EEW65707.1| formate acetyltransferase activating enzyme [Enterococcus faecium TC 6] gi|289163137|gb|EFD10984.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium D344SRF] gi|291592269|gb|EFF23883.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium E1636] gi|291596226|gb|EFF27488.1| pyruvate formate-lyase 1-activating enzyme [Enterococcus faecium E1679] Length = 253 Score = 39.9 bits (92), Expect = 0.67, Method: Composition-based stats. Identities = 44/275 (16%), Positives = 91/275 (33%), Gaps = 56/275 (20%) Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEIL 148 + IG IET + V Q GC + C FC+ T + TA+E+L Sbjct: 1 MEEKTIGYVHSIETFGSVDGPGLRFVVFMQ-GCRMRCQFCHNPDTWNIGGGKEYTADELL 59 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 + R G+ G I + G GEPL D + + A + Sbjct: 60 DKAERFRPYWGNKGG------------------ITVSG-GEPLLQIDFLIELFKKAKER- 99 Query: 209 GLSFSKRRITLSTSGFV-----PNIARVGEEIGVM--LAISLHAVSNDLRNILVPINRKY 261 K TL T G P +R E + L + + N+ L + Sbjct: 100 -----KMHTTLDTCGKPFTYEEPFFSRFQELMKYTDLLLFDIKHIDNEEHKKLT----HW 150 Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFN 319 E +++ ++ ++ + +V++ +D + L ++ + ++ ++P++ Sbjct: 151 DNENILEMAQYLSKINK--PVWIRHVLVPERSDYDEYLIRLDNFIQTLSNVDRVEILPYH 208 Query: 320 PWPGCEY------------LCSDQKDIVTFSECIK 342 ++ ++ + + Sbjct: 209 TMGKYKWETLGLKYPLEGIEPPTKERVENAKRLLH 243 >gi|254880766|ref|ZP_05253476.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. 4_3_47FAA] gi|319639776|ref|ZP_07994506.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. 3_1_40A] gi|254833559|gb|EET13868.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. 4_3_47FAA] gi|317388593|gb|EFV69442.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. 3_1_40A] Length = 302 Score = 39.9 bits (92), Expect = 0.67, Method: Composition-based stats. Identities = 14/106 (13%), Positives = 35/106 (33%), Gaps = 19/106 (17%) Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK---INLIPF 318 P E++++ R +++G+N ++ + L +P INL+P+ Sbjct: 197 PNELILENIRRVAEAD--FPYYIRIPLIEGVNADEKNIKLSAEFLASLPRHPEIINLLPY 254 Query: 319 NPW--------------PGCEYLCSDQKDIVTFSECIKRSGYSSPI 350 + G + ++ + + G + I Sbjct: 255 HDIGKGKHAKLGSIYNPKGYKMQTPSEEVQQQCIQILTDYGLKATI 300 >gi|307153499|ref|YP_003888883.1| nitrogenase cofactor biosynthesis protein NifB [Cyanothece sp. PCC 7822] gi|306983727|gb|ADN15608.1| nitrogenase cofactor biosynthesis protein NifB [Cyanothece sp. PCC 7822] Length = 483 Score = 39.9 bits (92), Expect = 0.67, Method: Composition-based stats. Identities = 38/220 (17%), Positives = 85/220 (38%), Gaps = 39/220 (17%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C++C N + ++ +VL P + +VI +++ + Sbjct: 66 CNIQCNYCNRKYD--CANESRPGVVSEVLT--------PEEAAHKVLVIAGKIPQMTVLG 115 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVMLAI 241 + G G+PL N ++ + +D ++ LST+G I R+ E + I Sbjct: 116 IAGPGDPLANPKQTFRTFELVADKA----PDIKLCLSTNGLMLPDYIDRIKELNVDHVTI 171 Query: 242 SLHAVSNDLRNILVPIN----RKYP-LE----------MLIDACRHYPGLSNARRITFEY 286 +++ + ++ + P ++Y +E ++A R L + Sbjct: 172 TINMIDPEIGTKIYPWVRYNRKRYTGIEGVKILHERQMEGLEALREADILCKVNSV---- 227 Query: 287 VMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCE 325 ++ GIND + ++++ A I N++P P Sbjct: 228 -LIPGINDH--HLQEVNEVIRSKGAFIHNIMPLISAPEHG 264 >gi|123967114|ref|YP_001012195.1| putative organic radical activating protein [Prochlorococcus marinus str. MIT 9515] gi|123201480|gb|ABM73088.1| possible organic radical activating enzyme [Prochlorococcus marinus str. MIT 9515] Length = 223 Score = 39.9 bits (92), Expect = 0.67, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 64/170 (37%), Gaps = 41/170 (24%) Query: 122 VGCSLTCSFCYTG----TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC++ C +C T +K ++ +EI+ ++ AR F Sbjct: 31 AGCNVGCPWCDTKHSWDKEKF-PLISIQEIINEIKRARKQGASF---------------- 73 Query: 178 KISNIVMMGMGEPL-CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236 +V+ G GEPL N DN+ ++++ + + + S +I + TSG Sbjct: 74 ----LVITG-GEPLHHNLDNLCQAINEETSTE--NQSPIKIHIETSGVSNLSGSF---DW 123 Query: 237 VMLAISLHAVS--------NDLRNILVPINRK-YPLEMLIDACRHYPGLS 277 + L+ H N+L+ I+ + +++ + Y S Sbjct: 124 ITLSPKRHQPPKTYFLKNCNELKIIINDQKDIDFAIDIKQEIMNKYQNSS 173 >gi|312863599|ref|ZP_07723837.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus vestibularis F0396] gi|322516171|ref|ZP_08069104.1| pyruvate formate-lyase activating enzyme [Streptococcus vestibularis ATCC 49124] gi|311101135|gb|EFQ59340.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus vestibularis F0396] gi|322125347|gb|EFX96702.1| pyruvate formate-lyase activating enzyme [Streptococcus vestibularis ATCC 49124] Length = 266 Score = 39.9 bits (92), Expect = 0.67, Method: Composition-based stats. Identities = 28/215 (13%), Positives = 73/215 (33%), Gaps = 37/215 (17%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C +C+ N + + + E + + I Sbjct: 35 GCKMRCQYCH--------NPDTWAM-----ESNKAVERTVEDVLDEALRFRHFWGEHGGI 81 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--------PNIARVGEE 234 + G GE + D V + +++ L TL T GFV + ++ Sbjct: 82 TVSG-GEAMLQIDFVTA---LFTEAKKLGI---HCTLDTCGFVYRNTPEYHEVVDKLLAV 134 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 ++L + + + + + P + +++ ++ + +V++ G+ D Sbjct: 135 TDLVL-LDIKEIDPEQ----HKFVTRQPNKNILEFAQYLSDK--QVPVWIRHVLVPGLTD 187 Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327 + L + +K + K ++P++ ++ Sbjct: 188 FDEHLVKLGEFVKTLKNVDKFEILPYHTMGEFKWR 222 >gi|262273034|ref|ZP_06050853.1| lysine 2,3-aminomutase [Grimontia hollisae CIP 101886] gi|262222944|gb|EEY74250.1| lysine 2,3-aminomutase [Grimontia hollisae CIP 101886] Length = 340 Score = 39.9 bits (92), Expect = 0.67, Method: Composition-based stats. Identities = 35/219 (15%), Positives = 68/219 (31%), Gaps = 42/219 (19%) Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153 ++ + K+R + V GC++ C +C R+ Sbjct: 92 DPLEEQGNDVPGLLHKYKNRVLMIVKG--GCAINCRYC------FRRHF----------- 132 Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN----VKKSLSIASDSMG 209 + G + + V++ G+PL D+ + +++ Sbjct: 133 --PYQDNKGGKSTWREAIAYLQQHPEVDEVILSGGDPLMAKDHELQWLIEAIESVPHIKR 190 Query: 210 LSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 L R+ + +P+ + V LA L R +V + + D Sbjct: 191 LRI-HTRLPV----VIPS------RVTVTLANMLATS----RLNIVLVTHINHANEIDDE 235 Query: 270 CRHYPGLSNARRITF--EYVMLKGINDSPRDALNLIKIL 306 R +T + V+L+G+NDS NL L Sbjct: 236 LRAVMATLKHAGVTLLNQGVLLRGVNDSVEALKNLSNRL 274 >gi|145639765|ref|ZP_01795367.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae PittII] gi|145271133|gb|EDK11048.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus influenzae PittII] gi|309750405|gb|ADO80389.1| Pyruvate formate-lyase activating enzyme [Haemophilus influenzae R2866] Length = 246 Score = 39.9 bits (92), Expect = 0.68, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 15/91 (16%) Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL-- 327 Y N YV++ G DS D L + ++G+ K+ L+P++ ++ Sbjct: 155 KYLQKRNQH-TWIRYVVVPGYTDSDHDVHLLGQFIEGMTNIEKVELLPYHRLGAHKWKTL 213 Query: 328 ----------CSDQKDIVTFSECIKRSGYSS 348 ++ + ++ G++ Sbjct: 214 GLDYELEDVLPPTKESLDHIKTILEGYGHTV 244 >gi|253682419|ref|ZP_04863216.1| heme biosynthesis [Clostridium botulinum D str. 1873] gi|253562131|gb|EES91583.1| heme biosynthesis [Clostridium botulinum D str. 1873] Length = 456 Score = 39.9 bits (92), Expect = 0.68, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 74/196 (37%), Gaps = 21/196 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC++ C+L C +C+ K AR ++ G + I+ ++ S Sbjct: 96 ALCLNVTHDCNLRCKYCFADEGKYHG-------------ARKVMSPEVGKKAIDFVIAHS 142 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV--- 231 RK + + G GEPL +K+ ++ A + + R T++T+ + N + Sbjct: 143 GPRKNIEVDLFG-GEPLIAIKEIKEIIAYAREQEKIHNKVIRFTMTTNALLLNDEIMEYM 201 Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVML 289 E ++L+I SND I V + Y + ++ + + + Sbjct: 202 DKEMGNIVLSIDGRKESNDNTRIRVDGSGTY--DAILPKIKEMVDKRDKSKQYYVRGTFT 259 Query: 290 KGINDSPRDALNLIKI 305 + D D +L + Sbjct: 260 RDNTDFYYDVKHLADL 275 >gi|251779583|ref|ZP_04822503.1| pyruvate formate-lyase 1-activating enzyme [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083898|gb|EES49788.1| pyruvate formate-lyase 1-activating enzyme [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 236 Score = 39.9 bits (92), Expect = 0.68, Method: Composition-based stats. Identities = 44/260 (16%), Positives = 84/260 (32%), Gaps = 52/260 (20%) Query: 98 GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC-----YTGTQKLVRNLTAEEILLQVL 152 G IET+ + + + V Q GCSL C +C +T T E+++ ++ Sbjct: 4 GRIHSIETMGLVDGPGIRVVVFFQ-GCSLRCKYCHNPDTWTYDGGEE--YTPEDLVKKI- 59 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 + G GEPL + + + L G++ Sbjct: 60 ----------------ERYKTYFESSNGGVTFSG-GEPLRQPEFLLEVLK-LCKERGIN- 100 Query: 213 SKRRITLSTSGFVPNIARVGEEIGV--MLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270 L TSGF E + ++ + D ++ + Sbjct: 101 ----TCLDTSGF--GFEEYDEILKYVDLVLFDIKHYDEDG----YKNVTYMDIDKSLKFL 150 Query: 271 RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYLC 328 + I +V++ G+ D NL K + I K+ L+P++ +Y Sbjct: 151 E--VVQDSKIPIWIRHVVVPGLTDGEEHIRNLKKYISNINGVEKVELLPYHLLGKNKY-- 206 Query: 329 SDQKDIVTFSECIKRSGYSS 348 D++ F ++ G + Sbjct: 207 ----DVLKFKYPLE--GVPA 220 >gi|128231|sp|P10390|NIFB_KLEPN RecName: Full=FeMo cofactor biosynthesis protein nifB gi|43839|emb|CAA31683.1| unnamed protein product [Klebsiella pneumoniae] Length = 468 Score = 39.9 bits (92), Expect = 0.68, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 56/148 (37%), Gaps = 20/148 (13%) Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221 P ++ + ++S + + G G+PL N ++L + + ++ LST Sbjct: 82 PEQAVVKVRQVAQAIPQLSVVGIAGPGDPLANIARTFRTLELIRE----QLPDLKLCLST 137 Query: 222 SGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVPI----NRKYP--------LEMLI 267 +G V + R+ + + ++++ + ++ + +Y + + Sbjct: 138 NGLVLPDAVDRLLDVGVDHVTVTINTLDAEIAAQIYAWLWLDGERYSGREAGEILIARQL 197 Query: 268 DACRHYPGLSNARRITFEYVMLKGINDS 295 + R + V++ GINDS Sbjct: 198 EGVRRLTAK--GVLVKINSVLIPGINDS 223 >gi|312880406|ref|ZP_07740206.1| Radical SAM domain protein [Aminomonas paucivorans DSM 12260] gi|310783697|gb|EFQ24095.1| Radical SAM domain protein [Aminomonas paucivorans DSM 12260] Length = 603 Score = 39.9 bits (92), Expect = 0.69, Method: Composition-based stats. Identities = 47/275 (17%), Positives = 92/275 (33%), Gaps = 45/275 (16%) Query: 42 IYVRGIRDFQGMSDISQE--VRHLLNQHFSIIYPEI------VDEKISCDGTRKWLLRFP 93 ++ +R G+ +E +R L + + P + V ++ D Sbjct: 175 LWPSLVRTLSGLKGCPREERLRA-LAELPGVYVPALGIPRTPVRRQVLAD--------LD 225 Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKL-VRNLTAEEILLQVL 152 + + + + I + V GC+ C FC G VR +A + QV Sbjct: 226 EGFLQDRMLVPSTAIVHDR---VAVQVFRGCTRGCRFCQAGMIDRPVRERSAASVCDQV- 281 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 L DF G E++ + ++ G+ E L D + + S+ LS Sbjct: 282 ---KRLLDFTGWEEVGFLS-------LATCDWSGLEEALVRLDEILR-----PRSIKLSL 326 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 R+ + + + + L + A + LR+++ E I A Sbjct: 327 PSLRMDAFSVELAAKLETLRKG---GLTFAPEAGTQRLRDVINKGV----TEEDIRASLE 379 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILK 307 R+ Y M+ ++ D +++I K Sbjct: 380 ATFAHGWDRVKL-YFMMGLPTETEEDLEGIVRIAK 413 >gi|160946256|ref|ZP_02093467.1| hypothetical protein PEPMIC_00218 [Parvimonas micra ATCC 33270] gi|158447779|gb|EDP24774.1| hypothetical protein PEPMIC_00218 [Parvimonas micra ATCC 33270] Length = 242 Score = 39.9 bits (92), Expect = 0.69, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 78/234 (33%), Gaps = 30/234 (12%) Query: 97 IGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARS 156 IG IET+ + + Q GC L C +C+ Q L + Sbjct: 3 IGRLHSIETMGLVDGPGIRTIFFLQ-GCPLRCLYCHNPD-------------TQAL--QG 46 Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR 216 P + + R + G GEPL + + ++L + G + Sbjct: 47 GTEITPDFVLSKAERYKTYYRDNGGVTFSG-GEPLLQGEFLAETLKLL-KENGYN---TC 101 Query: 217 ITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276 I S G + E + + + + SN +V + ++ Y Sbjct: 102 IDTSGYGNEKYFKEILENTD-TILLDVKSFSNQGYIEMVKQ-KMDGFYKFLEYIEKYY-- 157 Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK---INLIPFNPWPGCEYL 327 +I F +VM+ G D+ I+I+K K + ++P++ +Y Sbjct: 158 --KGKIWFRHVMVPGFTDNKESMDKFIEIIKPYRDKIERVEILPYHIMGVAKYK 209 >gi|52144799|ref|YP_082030.1| formate acetyltransferase activating enzyme (pyruvate formate-lyase activating enzyme) [Bacillus cereus E33L] gi|196040151|ref|ZP_03107453.1| pyruvate formate-lyase 1-activating enzyme [Bacillus cereus NVH0597-99] gi|225862489|ref|YP_002747867.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus 03BB102] gi|51978268|gb|AAU19818.1| formate acetyltransferase activating enzyme (pyruvate formate-lyase activating enzyme) [Bacillus cereus E33L] gi|196029006|gb|EDX67611.1| pyruvate formate-lyase 1-activating enzyme [Bacillus cereus NVH0597-99] gi|225788466|gb|ACO28683.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus 03BB102] Length = 243 Score = 39.9 bits (92), Expect = 0.69, Method: Composition-based stats. Identities = 40/243 (16%), Positives = 76/243 (31%), Gaps = 50/243 (20%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C +C+ N EI + +P + I Sbjct: 28 GCLLRCQYCH--------NADTWEI------GKGKEITVEEVMQDVTCYLPFIEASGGGI 73 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--------FVPNIARVGEE 234 + G GEPL D + + + + T+ +SG F + + E Sbjct: 74 TVSG-GEPLLQLDFL---IELFKKCKEIGI---HTTIDSSGGCYSEEPEFQNKLDILMEY 126 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 ++L H S R + N I Y N I +V++ G+ D Sbjct: 127 TDLVLLDLKHIDSKKHRKLTGKPN------EHILQFARYLSDKNK-PIWVRHVLVPGVTD 179 Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWP-------GCEY-----LCSDQKDIVTFSEC 340 + D L ++ + K+ ++P++ G +Y +K++ Sbjct: 180 NEEDLQKLSSFIQSLSNVQKVEVLPYHKLGVYKWEALGHKYPLANVEPPTEKNVEQARHI 239 Query: 341 IKR 343 ++ Sbjct: 240 LQA 242 >gi|229074375|ref|ZP_04207412.1| hypothetical protein bcere0024_4050 [Bacillus cereus Rock4-18] gi|229095162|ref|ZP_04226155.1| hypothetical protein bcere0020_4190 [Bacillus cereus Rock3-29] gi|229114104|ref|ZP_04243529.1| hypothetical protein bcere0017_4090 [Bacillus cereus Rock1-3] gi|228669374|gb|EEL24791.1| hypothetical protein bcere0017_4090 [Bacillus cereus Rock1-3] gi|228688243|gb|EEL42128.1| hypothetical protein bcere0020_4190 [Bacillus cereus Rock3-29] gi|228708737|gb|EEL60873.1| hypothetical protein bcere0024_4050 [Bacillus cereus Rock4-18] Length = 243 Score = 39.9 bits (92), Expect = 0.71, Method: Composition-based stats. Identities = 40/243 (16%), Positives = 77/243 (31%), Gaps = 50/243 (20%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C +C+ N EI + +P + I Sbjct: 28 GCLLRCQYCH--------NADTWEI------GKGKEITVEEVMQDVTCYLPFIEASGGGI 73 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--------FVPNIARVGEE 234 + G GEPL D + + + + T+ +SG F + ++ + Sbjct: 74 TVSG-GEPLLQLDFL---IELFKKCKEVGI---HTTIDSSGGCYSEEPEFQQKLDKLMDY 126 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 ++L H S R + N I Y N I +V++ G+ D Sbjct: 127 TDLVLLDLKHIDSKKHRKLTGKSN------EHILQFARYLSDKNK-PIWVRHVLVPGVTD 179 Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWP-------GCEY-----LCSDQKDIVTFSEC 340 + D L ++ + K+ ++P++ G +Y +K++ Sbjct: 180 NEEDLQKLSSFIQSLSNVQKVEVLPYHKLGVYKWEALGHKYPLANVEPPTEKNVEQARHI 239 Query: 341 IKR 343 +K Sbjct: 240 LKA 242 >gi|124516698|gb|EAY58206.1| putative radical SAM family protein [Leptospirillum rubarum] Length = 530 Score = 39.9 bits (92), Expect = 0.71, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 70/195 (35%), Gaps = 27/195 (13%) Query: 99 GPVEIETVY--IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVR--NLTAEEILLQVLLA 154 +E+V+ R + + ++ GC CSFC + R E+I+ + Sbjct: 232 DLRYLESVFEGHEFYHRTMVGIQTKRGCPYGCSFCLYTYIEGKRVYYRDPEDIVNE---M 288 Query: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSK 214 R + G + + E + + K+L G+ S Sbjct: 289 RQYYDRWGIRNFWFADAQFIPG-------VKAIPEAMD----LLKALR----DSGMKISW 333 Query: 215 RRITLSTSGFVPNIARVGEEIGVM-LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY 273 + TS P +A++ E G+ L +S+ + S ++ + L + L+ L++ CR+ Sbjct: 334 SGY-IRTSLISPEMAKLMVESGMGDLEVSVTSGSQEILDSLR---MGFRLDQLVEGCRNL 389 Query: 274 PGLSNARRITFEYVM 288 I Y + Sbjct: 390 RDAGYKGNIILNYSL 404 >gi|307720582|ref|YP_003891722.1| Radical SAM domain-containing protein [Sulfurimonas autotrophica DSM 16294] gi|306978675|gb|ADN08710.1| Radical SAM domain protein [Sulfurimonas autotrophica DSM 16294] Length = 318 Score = 39.9 bits (92), Expect = 0.72, Method: Composition-based stats. Identities = 32/192 (16%), Positives = 71/192 (36%), Gaps = 28/192 (14%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+ C +C L + T + ++I + + KI I Sbjct: 32 CNFDCLYCE-----LAPSATV-----------DKQTEVVSVDEIINELTKHLHDKIDVIT 75 Query: 184 MMGMGEP-LCNF-DNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVML 239 + GEP L + D + +++ K I +++ V A + + V L Sbjct: 76 LTANGEPTLYPYLDELIDAINKIKGET-----KTLILTNSASLVDEKVFASLLKLDEVKL 130 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 ++ AVS+D+ + + +E ++ + + ++ E + + G+ND+ + Sbjct: 131 SLD--AVSSDIFKKIDRPHPSITVENVVQKVIEF-SQTYKGKLFIEILFVHGLNDTKEEI 187 Query: 300 LNLIKILKGIPA 311 L ++L I Sbjct: 188 QKLNEVLHKIKC 199 >gi|320535961|ref|ZP_08036025.1| pyruvate formate-lyase 1-activating enzyme [Treponema phagedenis F0421] gi|320147188|gb|EFW38740.1| pyruvate formate-lyase 1-activating enzyme [Treponema phagedenis F0421] Length = 239 Score = 39.9 bits (92), Expect = 0.72, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 59/190 (31%), Gaps = 31/190 (16%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C +C+ N + E E ++ + + Sbjct: 26 GCPLRCKYCH--------NCDT-------WFQKDAKFVETAEETFEKIIKYKRFIRSGGV 70 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM--LA 240 + G GEPL + V + G+ + TSG N V E + V + Sbjct: 71 TVTG-GEPLMQPEYVCELFK-LCKKEGI-----HTAIDTSGIYLN-DAVREALKVTDLVL 122 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 + A + L + P+ + + +V++ GI D P D Sbjct: 123 LDYKAADPETHLEL-TGVPQQPILNFLAYLCEI-----NMPMWIRHVVIPGITDKPEDLE 176 Query: 301 NLIKILKGIP 310 + +K +P Sbjct: 177 KIASFIKTLP 186 >gi|307705441|ref|ZP_07642296.1| hypothetical protein ydeM [Streptococcus mitis SK597] gi|307620976|gb|EFO00058.1| hypothetical protein ydeM [Streptococcus mitis SK597] Length = 352 Score = 39.9 bits (92), Expect = 0.72, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 54/165 (32%), Gaps = 19/165 (11%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+LTCS+C+ + +L++E D + + K +I Sbjct: 3 CNLTCSYCFENDKDRKPSLSSE-------------YDGKKIVNFILDELNFKKYKSLDIC 49 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE----IGVML 239 G GEPL NF ++ + + + S IT T F I + I V Sbjct: 50 FTG-GEPLYNFQFIRNLCETLDEKLAIPISYTLITNGTI-FTNKIMSFLDCHNFAIQVSF 107 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF 284 H + + N L + L Y LS R+ Sbjct: 108 DGDEHYHNLERCNRLGKGTYHRIINNLSVMLEKYKNLSIQARVNI 152 >gi|284162142|ref|YP_003400765.1| lysine 2,3-aminomutase YodO family protein [Archaeoglobus profundus DSM 5631] gi|284012139|gb|ADB58092.1| lysine 2,3-aminomutase YodO family protein [Archaeoglobus profundus DSM 5631] Length = 368 Score = 39.9 bits (92), Expect = 0.72, Method: Composition-based stats. Identities = 58/333 (17%), Positives = 114/333 (34%), Gaps = 78/333 (23%) Query: 44 VRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKIS-------CDGTRKWLLRFPA-- 94 VR + + + +I Q+V L + I + +S D ++ + P Sbjct: 11 VRTVDELKEYVNIPQDVEEKLRKVVEIHPMNVTRYYLSLIDWNDSNDPIKRMAIPSPDEL 70 Query: 95 ----RCIGGPVEIETVYIP---EKSRGTLCVSSQVGCSLTCSFCYTGTQ-KLVRNLTAEE 146 E E + K T V + C++ C +C+ L R+ E Sbjct: 71 SCLEGDYDTSGEHENTKMRGLQHKYSETALVLATNRCAVYCRYCFRKRMVGLTRD----E 126 Query: 147 ILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEP--LCNFDNVKKSLSIA 204 ++ ++ A + + +++N+++ G G+P L N +K+ L+ Sbjct: 127 VIRRLDRAVKYIEEH---------------EEVTNVLISG-GDPFVLDN-KIIKRFLNKL 169 Query: 205 SDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH--------AVSNDLRNILVP 256 + L F R G + V + L+ +L+ I V Sbjct: 170 VEIPHLDF----------------IRFGSRVPVTFPMRLNDDDLPEILGEFAELKRIYVV 213 Query: 257 INRKYP---LEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313 + +P E A + L N ++ + V+LKG+ND P L ++ Sbjct: 214 THYNHPKEFTEESTGAIKRL--LDNGIVVSNQAVLLKGVNDDPYTLAELHRL-------- 263 Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGY 346 L+ + P + C K + + + GY Sbjct: 264 -LVRYGIVPYYVFQCRPVKRVKGIFQVPLKEGY 295 >gi|15668274|ref|NP_247067.1| hypothetical protein MJ_0103 [Methanocaldococcus jannaschii DSM 2661] gi|2495799|sp|Q57567|Y103_METJA RecName: Full=Uncharacterized protein MJ0103 gi|1498868|gb|AAB98083.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM 2661] Length = 433 Score = 39.9 bits (92), Expect = 0.72, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 70/195 (35%), Gaps = 26/195 (13%) Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167 + E+ R + V GC+L C FC + + + + L + E+ Sbjct: 102 LIERGRNIIQVRGHCGCNLNCIFCSVDEGEFSKTRKNDYYVDLEYLIENYKKIVDFKENK 161 Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNF---DNVKKSLSIASDSMGLSFSKRRITLSTSGF 224 G GEP + D V++ I G+ +++ T+G Sbjct: 162 FIEAHLD-----------GQGEPSLYYPLVDLVQELAEINKKGNGI------VSMQTNGT 204 Query: 225 V---PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281 V I + E + +S++A ++ ++ R Y ++ ++D + ++ Sbjct: 205 VLNYKLIDELEEAGLHRINLSINA-LDEKMAKMLSGRRDYNIKKILDIAEYI--KNSKIH 261 Query: 282 ITFEYVMLKGINDSP 296 + ++L IND Sbjct: 262 LLIAPLLLPNINDEE 276 >gi|332159105|ref|YP_004424384.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Pyrococcus sp. NA2] gi|331034568|gb|AEC52380.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Pyrococcus sp. NA2] Length = 483 Score = 39.9 bits (92), Expect = 0.73, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 74/190 (38%), Gaps = 24/190 (12%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+ +C +CY L N L+ + I+ ++ S I+ I Sbjct: 98 CNFSCVYCYGNK-GLYGNEKP-----------KLMNLETAKKSIDLLLQKSSN--ITIIT 143 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEE--IGVML 239 G GEPL NF +K+++ A K T++T G++ P IA E + + Sbjct: 144 FFG-GEPLLNFKVIKEAVEYAKKRANELNKKVSFTITTKGYLLTPEIADFLLENNFDINI 202 Query: 240 AISLHAVSNDLRNILVPINRKYPL--EMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 ++ + ++ +L + Y + + + L + I+ + ++ D + Sbjct: 203 SLDGYRELHNKNRLLADGSPTYNVVANNIKYLLKRAKELGRFKNISIKATLMP---DQVK 259 Query: 298 DALNLIKILK 307 +A + K +K Sbjct: 260 EAYKVYKHIK 269 >gi|256810799|ref|YP_003128168.1| Radical SAM domain protein [Methanocaldococcus fervens AG86] gi|256793999|gb|ACV24668.1| Radical SAM domain protein [Methanocaldococcus fervens AG86] Length = 438 Score = 39.9 bits (92), Expect = 0.73, Method: Composition-based stats. Identities = 41/237 (17%), Positives = 83/237 (35%), Gaps = 42/237 (17%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC C FC LAR++ + + M + G K++ + Sbjct: 174 GCPRRCRFC---------------------LARAIYYPPRFRKLNDLMYLAEEGIKVNKV 212 Query: 183 VMMGMGEP-LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 + + P + ++ + + + D G+ S + T ++ R+ + L I Sbjct: 213 NKVALIAPSVGDYKYIVELCNFL-DEKGVQISPSSLRADT--LNDDLMRILK--PKTLTI 267 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 + A S LR + + + I+ + Y N ++ Y M+ ++ D Sbjct: 268 APEAGSERLREFIKKDINEGDIFNAIELAKKY----NVEKVKL-YFMVGIPTETDEDIEE 322 Query: 302 LIKILKGIP-------AKIN-LIP--FNPWPGCEYLCSDQKDIVTFSECIKRSGYSS 348 LI + K I +N +IP + E+ S +K I + +K+ Sbjct: 323 LITLTKKIKKEIRRVEISVNPMIPKPHTDFEEEEFDLSSKKKIKYIEKALKKENIKV 379 >gi|186473378|ref|YP_001860720.1| radical SAM domain-containing protein [Burkholderia phymatum STM815] gi|184195710|gb|ACC73674.1| Radical SAM domain protein [Burkholderia phymatum STM815] Length = 360 Score = 39.9 bits (92), Expect = 0.74, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 56/142 (39%), Gaps = 14/142 (9%) Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 R+ L + L V+ ++R ++P P+ ++A R + +++ Y+ Sbjct: 214 FERMKASGIDTLGMHLEVVTPEVRARVMPGKASVPISRYMEAFRAAVAVFGKGQVS-TYI 272 Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFSE-CIKR 343 + G+ D+ L++ + L I ++PF P G F + ++ Sbjct: 273 L-AGLGDTAEAILSMSRELVEIGVYPFVVPFVPISGTPLEDHPAPS----HAFMKSILEP 327 Query: 344 SGYSSPIR--TPRGLDILAACG 363 G + +R R DI A CG Sbjct: 328 LG--AMLRSAQMRSADIKAGCG 347 >gi|227833911|ref|YP_002835618.1| pyruvate formate lyase activating enzyme [Corynebacterium aurimucosum ATCC 700975] gi|262184914|ref|ZP_06044335.1| pyruvate formate lyase activating enzyme [Corynebacterium aurimucosum ATCC 700975] gi|227454927|gb|ACP33680.1| pyruvate formate lyase activating enzyme [Corynebacterium aurimucosum ATCC 700975] Length = 289 Score = 39.9 bits (92), Expect = 0.74, Method: Composition-based stats. Identities = 50/306 (16%), Positives = 93/306 (30%), Gaps = 81/306 (26%) Query: 71 IYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSF 130 PE++ + S D + + V P +R T+ +S GC L C + Sbjct: 36 TRPELMQARRSGD----------VALVHSWELVTAVDGP-GTRMTMFMS---GCPLRCQY 81 Query: 131 CYTGTQKLVRNLTAEEI----LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186 C+ N E+ L ++ + + G + G Sbjct: 82 CH--------NPDTMEMKVGTLERIEDVVKRIKRYKPVFKASGGGLTISG---------- 123 Query: 187 MGEPLCNFDNVKKSLSIAS---DSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 GEPL G+ T+ TSG++ R + + L + Sbjct: 124 -GEPLFQ----IAFARRLLKEVHDAGI-----HTTIDTSGYLGARLRDEDLDNIDLVLLD 173 Query: 244 HAVSND------LRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 ++ R L P ++A + + +V++ G+ D P Sbjct: 174 VKSGDEETYKKVTRRELQPT---IDFGDRLNAI--------GKPVWIRFVVVPGLTDGPE 222 Query: 298 DALNLIKILKGIPAKINLI---PFNP-----WPGCEY-------LCSDQKDIVTFSECIK 342 + N+ KI+ + I I PF+ W Y +D+ E + Sbjct: 223 NVANVAKIVSRWKSNIERIEVLPFHNMGADKWHELGYPYTLEDTKPPKPEDVEEIREVFR 282 Query: 343 RSGYSS 348 + G+ Sbjct: 283 KEGFVV 288 >gi|164687599|ref|ZP_02211627.1| hypothetical protein CLOBAR_01240 [Clostridium bartlettii DSM 16795] gi|164603373|gb|EDQ96838.1| hypothetical protein CLOBAR_01240 [Clostridium bartlettii DSM 16795] Length = 248 Score = 39.9 bits (92), Expect = 0.74, Method: Composition-based stats. Identities = 34/246 (13%), Positives = 79/246 (32%), Gaps = 52/246 (21%) Query: 123 GCSLTCSFCYTGTQKLVRNL----TAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 GC L C +C+ N T +E+ ++ ++ + G G Sbjct: 28 GCPLRCKYCH-NRDTWKTNCGKEYTVDELAQDIMKYQTYMQFSGGGVTASGGEATLQAEF 86 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP--NIARVGEEIG 236 ++ + + L L T+GFV + ++ + Sbjct: 87 VT---------------------ELFAKCKELGI---HTCLDTAGFVDIEKVDKLLDYTD 122 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 ++L + + + N+ L + E + +H + + V++ GI D Sbjct: 123 LVL-LDIKHIDNEKCKQLTGVGN----EKALKLAKHLDERN--IPVWIRQVLVPGITDDQ 175 Query: 297 RDALNLIKILKGIPA--KINLIPFN-------PWPGCEY-----LCSDQKDIVTFSECIK 342 +D L + + + ++ +P++ G EY ++I S+ ++ Sbjct: 176 KDLEKLGQFVSTLNNVDRVEFLPYHGMGIHKWENMGFEYELKDVQEPTPEEIKRASDIVE 235 Query: 343 RSGYSS 348 G Sbjct: 236 SFGVEV 241 >gi|327398530|ref|YP_004339399.1| glycyl-radical enzyme activating protein family [Hippea maritima DSM 10411] gi|327181159|gb|AEA33340.1| glycyl-radical enzyme activating protein family [Hippea maritima DSM 10411] Length = 298 Score = 39.9 bits (92), Expect = 0.77, Method: Composition-based stats. Identities = 35/241 (14%), Positives = 77/241 (31%), Gaps = 41/241 (17%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C C+ A E++ Q E IE + S + I Sbjct: 83 CTM-CGKCWQSCP-----TNALEVVGQYY---------KTDELIEELTKDSAFFEGGGIT 127 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 + G GE ++ + + + GL + L T+G+ + + L + Sbjct: 128 ISG-GEAFVQYEFLMELIK------GLKAKHLHLALDTTGYTDKEKLLSTVEFIDLYLYD 180 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 V + ++ + + A +I ++ IND + I Sbjct: 181 LKVMDPAKHKQYTGVDNTIILKNLKALDE-----KGAQIAIRIPIIPTINDDQENIKATI 235 Query: 304 KILKGIP--AKINLIPFNPWPGCEYLC------------SDQKDIVTFSECIKRSGYSSP 349 + LK + ++L+P++ +Y +++ E ++ G+ Sbjct: 236 EFLKQLNNVVSVDLLPYHSMMVDKYKRLKMPFLLGDIKKPSDEEMEELKETFQKEGFKVN 295 Query: 350 I 350 I Sbjct: 296 I 296 >gi|255305100|ref|ZP_05349272.1| 4-hydroxyphenylacetate decarboxylase, activating subunit [Clostridium difficile ATCC 43255] Length = 316 Score = 39.9 bits (92), Expect = 0.77, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 61/187 (32%), Gaps = 23/187 (12%) Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236 R + G GEPL + + + ++ I S ++ +I Sbjct: 134 RSNGGVTFSG-GEPLLQHEFL---HEVLLKCHEVNI-HTAIETSACVSNEVFNKIFNDID 188 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 H R Y +++++ + R+ ++ G NDS Sbjct: 189 FAFIDIKHM----DREKHKEQTGVYN-DLILENISNLANSDWNGRLVLRVPVISGFNDSV 243 Query: 297 RDALNLIKIL-KGIPAKINLIPFNPWPGC-------EYLCSDQKDI-----VTFSECIKR 343 + ++I + K +INL+PF+ EY SD+ D+ + Sbjct: 244 ENISDIISFMHKNNLVEINLLPFHRLGESKWIQLGKEYEYSDKGDVDEGHLEELQDIFLD 303 Query: 344 SGYSSPI 350 +G + + Sbjct: 304 NGIACYV 310 >gi|51893571|ref|YP_076262.1| hypothetical protein STH2433 [Symbiobacterium thermophilum IAM 14863] gi|51857260|dbj|BAD41418.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM 14863] Length = 483 Score = 39.9 bits (92), Expect = 0.77, Method: Composition-based stats. Identities = 47/259 (18%), Positives = 84/259 (32%), Gaps = 44/259 (16%) Query: 90 LRFPARCIGGPVEIETVY-IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEIL 148 LR P E E V P +C++ C+L C++C+ + Sbjct: 83 LRAQGLLFAPPPEWEPVMPKPGDPLRAICLNVAHACNLRCTYCFADDGTYGGPV------ 136 Query: 149 LQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSM 208 L+ + ++ ++ S R + + G GEPL N+ V+++++ A Sbjct: 137 -------KLMPFEVARQAVDLLIRLSGPRPVCEVDFFG-GEPLMNWKVVRETIAYAR-EA 187 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEI---GVMLAISLHAVSNDLRNILVPINRKYPLEM 265 G K T+ + +E+ V L +SL D R + R Sbjct: 188 GRRAGKAFTFTLTTNATLLTPEILDELDREQVSLILSL-----DGRPEVHDAKRSGSSRR 242 Query: 266 LIDACRHYPGLS-NARRITFEYVMLKGIN-----------------DSPRDALNLIKILK 307 + +A R + +EY +G D DAL ++ + Sbjct: 243 VEEAIRMVLERRAPGGKPVWEYGAAQGATGRGAYAVLRGTYTADNLDFAEDALYMVDRMH 302 Query: 308 GIPAKINLIPFNPWPGCEY 326 +L P P Y Sbjct: 303 SP--YFSLEPVVATPDAPY 319 >gi|261402464|ref|YP_003246688.1| Radical SAM domain protein [Methanocaldococcus vulcanius M7] gi|261369457|gb|ACX72206.1| Radical SAM domain protein [Methanocaldococcus vulcanius M7] Length = 433 Score = 39.9 bits (92), Expect = 0.77, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 69/195 (35%), Gaps = 26/195 (13%) Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167 + E+ R + V GC+L C FC + + D Sbjct: 102 LIERGRNIIQVRGHCGCNLNCIFCSVDEGEFSK-----------TRKNDYYVDLDYLISE 150 Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNF---DNVKKSLSIASDSMGLSFSKRRITLSTSGF 224 + K + G GEP + D V+ + I G+ +++ T+G Sbjct: 151 YKKLSEFKENKYLEAHLDGQGEPSLYYPLVDLVQNLVDINKKGNGI------VSMQTNGT 204 Query: 225 V---PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281 V I + E + +S++A ++ ++ + Y +E ++D + ++ Sbjct: 205 VLSYKLIDELEEVGLHRINLSINA-LDEKMAKMLSGRKDYNVEKILDLAEYI--KNSKIH 261 Query: 282 ITFEYVMLKGINDSP 296 + ++L +ND+ Sbjct: 262 LLVAPLLLPNVNDNE 276 >gi|325663171|ref|ZP_08151621.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae bacterium 4_1_37FAA] gi|331086761|ref|ZP_08335838.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae bacterium 9_1_43BFAA] gi|325470625|gb|EGC73855.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae bacterium 4_1_37FAA] gi|330409927|gb|EGG89362.1| pyruvate formate-lyase 1-activating enzyme [Lachnospiraceae bacterium 9_1_43BFAA] Length = 257 Score = 39.5 bits (91), Expect = 0.81, Method: Composition-based stats. Identities = 31/239 (12%), Positives = 74/239 (30%), Gaps = 41/239 (17%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C +C+ N E ++ E +EG + + Sbjct: 28 GCPMRCLYCH--------NPDTWE--------PNIGEQQSVEEVLEGFYSNLPFYRHGGV 71 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSM---GLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 + G GEP+ D + + + + S S + F+ + ++ + ++ Sbjct: 72 TVTG-GEPMMQMDFLIELFTKLKKDHIHTCIDTSGIMFQPSNAVFMEKLEKLLQVTD-LI 129 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 + + ++ + L + I A Y N I +V++ GI Sbjct: 130 MLDIKHINGEEHKKLTAHSN-----ERILAFARYLDEQN-IPIWVRHVIVPGITFYQEYL 183 Query: 300 LNLIKILKGIPAK--INLIPFNPWPGCEYL------------CSDQKDIVTFSECIKRS 344 L L + ++++P++ +Y ++D + + Sbjct: 184 EQLGTFLGTLNNVKALDILPYHSMGKAKYDNLHMDYPLKDTPEPSKEDAEAAKRVVLAA 242 >gi|217967612|ref|YP_002353118.1| radical SAM protein [Dictyoglomus turgidum DSM 6724] gi|217336711|gb|ACK42504.1| Radical SAM domain protein [Dictyoglomus turgidum DSM 6724] Length = 200 Score = 39.5 bits (91), Expect = 0.81, Method: Composition-based stats. Identities = 45/192 (23%), Positives = 68/192 (35%), Gaps = 24/192 (12%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+ C FC ++N T QV R +L P ++I G + R +V Sbjct: 20 CTNRCVFC-------IKNFT-----DQVGNKRLVLDREPSSKEIIGSLNKIDLRTYKEVV 67 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV---MLA 240 G GEPL + VK D RI + G V N + EI ++ Sbjct: 68 FCGFGEPLIRVEVVKSVSRFIKD--MFPHLPIRIDTNGHGNVFNQRNILPEIAPYIDAIS 125 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 ISL+A + + + +A + LS +I + V +N D Sbjct: 126 ISLNAEDKEKYDKISRPV----FSDAYNAVIEFIKLS---KIYIKDVAASVVNLPTVDIE 178 Query: 301 NLIKILKGIPAK 312 KI K + K Sbjct: 179 RCEKIAKDLGVK 190 >gi|222152350|ref|YP_002561525.1| pyruvate formate-lyase activating enzyme [Streptococcus uberis 0140J] gi|222113161|emb|CAR40596.1| putative pyruvate formate-lyase activating enzyme [Streptococcus uberis 0140J] Length = 257 Score = 39.5 bits (91), Expect = 0.83, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 70/208 (33%), Gaps = 17/208 (8%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG--RKIS 180 GC L C +C + EE+L +G+ ++ V+ + Sbjct: 29 GCPLRCPWCANPESQKK---APEEMLTADCKGHETVGEQKTVSEVMEEVLKDRDFYEESG 85 Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 V + GE + K++ + + GL I + + + + + + Sbjct: 86 GGVTLSGGEIFAQYP-FAKAILKEAKANGL---HTAIETTAYAKPEHFKDLIQYVDFIYT 141 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 H + LR+ V + I + S + I ++ NDS DA Sbjct: 142 DLKHY--DSLRHRQVTGVTNNLIVDNI-----HYAFSQGKEIVLRIPVIPDFNDSLEDAQ 194 Query: 301 NLIKILKGIPA-KINLIPFNPWPGCEYL 327 ++ + K+ L+PF+ + +Y Sbjct: 195 AFSQLFNQLDIDKVQLLPFHQFGENKYK 222 >gi|49480125|ref|YP_034775.1| formate acetyltransferase activating enzyme (pyruvate formate-lyase activating enzyme) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331681|gb|AAT62327.1| formate acetyltransferase activating enzyme (pyruvate formate-lyase activating enzyme) [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 243 Score = 39.5 bits (91), Expect = 0.83, Method: Composition-based stats. Identities = 40/243 (16%), Positives = 76/243 (31%), Gaps = 50/243 (20%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C +C+ N EI + +P + I Sbjct: 28 GCLLRCQYCH--------NADTWEI------GKGKEITVEEVMQDVTCYLPFIEASGGGI 73 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--------FVPNIARVGEE 234 + G GEPL D + + + + T+ +SG F + + E Sbjct: 74 TVSG-GEPLLQLDFL---IELFKKCKEIGI---HTTIDSSGGCYSEEPEFQNKLDILMEY 126 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 ++L H S R + N I Y N I +V++ G+ D Sbjct: 127 TDLVLLDLKHIDSKKHRKLTGKSN------EHILQFARYLSDKNK-PIWVRHVLVPGVTD 179 Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWP-------GCEY-----LCSDQKDIVTFSEC 340 + D L ++ + K+ ++P++ G +Y +K++ Sbjct: 180 NEEDLQKLSSFIQSLSNVQKVEVLPYHKLGVYKWEALGHKYPLANVEPPTEKNVEQARHI 239 Query: 341 IKR 343 ++ Sbjct: 240 LQA 242 >gi|329296403|ref|ZP_08253739.1| putative lysine aminomutase [Plautia stali symbiont] Length = 342 Score = 39.5 bits (91), Expect = 0.85, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 69/224 (30%), Gaps = 57/224 (25%) Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY------TGTQKLVRNLTAEEI 147 + + K+R L V GC++ C +C+ Q RN A Sbjct: 92 DPLDEQSSVVPGLLHKYKNRAMLLVKG--GCAVNCRYCFRRHFPYQDNQGNKRNWQAA-- 147 Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN----VKKSLSI 203 + + ++ I+ G G+PL D + +L Sbjct: 148 ----------------------IDYIAAHPELDEIIFSG-GDPLMAKDQELAWLIGALEN 184 Query: 204 ASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPL 263 L R+ + I + L + D R ++ ++ Sbjct: 185 IPHLKRLRI-HSRLPV--------------VIPARITEGLCQLLADTRLQVLLVSHINHA 229 Query: 264 EMLIDACRHYPGLSNARRITF--EYVMLKGINDSPRDALNLIKI 305 + + +A R +T + V+L+G+ND DA L ++ Sbjct: 230 QEIDEALRERMQRLKRAGVTLLNQSVLLRGVND---DAQTLAQL 270 >gi|2500056|sp|Q46267|PFLA_CLOPA RecName: Full=Pyruvate formate-lyase-activating enzyme; Short=PFL-activating enzyme; AltName: Full=Formate-C-acetyltransferase-activating enzyme gi|1072362|emb|CAA63749.1| pyruvate-formate-lyase-activating enzyme [Clostridium pasteurianum] Length = 238 Score = 39.5 bits (91), Expect = 0.85, Method: Composition-based stats. Identities = 45/239 (18%), Positives = 87/239 (36%), Gaps = 40/239 (16%) Query: 97 IGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLL 153 +G IE++ + + V Q GC L CS+C+ T + LTAEE+L ++L Sbjct: 3 MGRIHSIESMGLVDGPGIRTVVFFQ-GCGLRCSYCHNPDTWNMAGGKELTAEELLKKLLR 61 Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213 + P R + G GE L + + L G+ Sbjct: 62 FK-----------------PYFDRSGGGVTFSG-GEVLLQPEFLIDILK-LCKEQGI--- 99 Query: 214 KRRITLSTSGFVPNIAR--VGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 + T+G+ + V+L + V +D + ++ + + A Sbjct: 100 --HTAIDTAGYGYGNYEEILKHTDLVLL--DIKHVDDDGYKCITGKGKR-GFDDFLKAVE 154 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYLC 328 + ++ +V++ + DS + L I+K I K+ L+P++ +Y Sbjct: 155 NI-----GVKVWIRHVIVPTLTDSKENIRKLANIIKNIRNVEKVELLPYHTLGINKYEK 208 >gi|313203906|ref|YP_004042563.1| nitrogenase cofactor biosynthesis protein nifb [Paludibacter propionicigenes WB4] gi|312443222|gb|ADQ79578.1| nitrogenase cofactor biosynthesis protein NifB [Paludibacter propionicigenes WB4] Length = 424 Score = 39.5 bits (91), Expect = 0.86, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 77/228 (33%), Gaps = 39/228 (17%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C++C V +R + + + +I N+ Sbjct: 33 CNIQCNYCNRK-------------YDCVNESRPGVTSSVLAPFQAVEYLRDLDGRIENLA 79 Query: 184 MMGM---GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVM 238 ++G+ G+P N + +++ S F ++ LST+G P I + E Sbjct: 80 VIGIAGPGDPFANPEETLETMRRVSKE----FPEKIFCLSTNGLNLEPYIDEIAELNVSH 135 Query: 239 LAISLHAVSNDLRNILVPINRKYP------------LEMLIDACRHYPGLSNARRITFEY 286 + I+++A+ + + R LE + S +I Sbjct: 136 VTITINAIDPKITAKIYKWVRFNKKVYRGEEGAAILLERQLACIAKLKARSITIKINS-- 193 Query: 287 VMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEYLCSDQKD 333 +++ GIN + K + A IN IP P + ++ D Sbjct: 194 IIIPGIN--EDHIPEVAKKCAELGADVINCIPLIPTAETPFEAVEKPD 239 >gi|217978150|ref|YP_002362297.1| Radical SAM domain protein [Methylocella silvestris BL2] gi|217503526|gb|ACK50935.1| Radical SAM domain protein [Methylocella silvestris BL2] Length = 370 Score = 39.5 bits (91), Expect = 0.88, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 56/144 (38%), Gaps = 24/144 (16%) Query: 230 RVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 R+ E L + L AV++++R ++P + P+E A R + +++ Y++ Sbjct: 218 RLREAGADALGMHLEAVTDEVRARIMPGKAQVPVERYFSAFRAAVPVFGRGQVS-TYIL- 275 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFSE------- 339 G+ D+ D L++ + L I ++PF P G F + Sbjct: 276 AGLGDARDDILDICRRLIDIGVYPFVVPFTPISGTPLENHPTPSP----AFMDDLLAPLA 331 Query: 340 -CIKRSGYSSPIRTPRGLDILAAC 362 + G +S D+ A C Sbjct: 332 LMLSEGGLAS-------SDVKAGC 348 >gi|25027857|ref|NP_737911.1| molybdenum cofactor biosynthesis protein A [Corynebacterium efficiens YS-314] gi|259506248|ref|ZP_05749150.1| molybdopterin cofactor biosynthesis protein A [Corynebacterium efficiens YS-314] gi|23493140|dbj|BAC18111.1| putative molybdopterin biosynthesis protein MoaA2 [Corynebacterium efficiens YS-314] gi|259166152|gb|EEW50706.1| molybdopterin cofactor biosynthesis protein A [Corynebacterium efficiens YS-314] Length = 381 Score = 39.5 bits (91), Expect = 0.88, Method: Composition-based stats. Identities = 45/238 (18%), Positives = 82/238 (34%), Gaps = 30/238 (12%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L C++C L E I + I I I Sbjct: 65 CNLRCTYCMPAEG---------------LEWMPTEQTLSDAETIRLIRIAVEKLGIRQIR 109 Query: 184 MMGMGEPLC--NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 G GEPL N +++ + + G + + +T + G I + E + I Sbjct: 110 FTG-GEPLLRKNLEDIISATTALRTDEGETV-RTALTTNGLGLDKRIVGLREAGLHRVNI 167 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SL + R + + R+ L ++ + S + + V++ G+N D + Sbjct: 168 SL-DTIDAQR--YLSLTRRDRLSGVLSSIEAAVA-SGMQPVKVNAVVMPGVN--EVDIVP 221 Query: 302 LIKILKGIPAKINLI---PFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356 L + A++ I P P ++ D E ++++ SP R PRG Sbjct: 222 LASYCLELGAQLRFIEQMPL--GPREQWRRGDMVTAAQIFERLEQAFILSPAREPRGS 277 >gi|268611539|ref|ZP_06145266.1| Radical SAM-superfamily protein [Ruminococcus flavefaciens FD-1] Length = 203 Score = 39.5 bits (91), Expect = 0.90, Method: Composition-based stats. Identities = 37/214 (17%), Positives = 77/214 (35%), Gaps = 31/214 (14%) Query: 105 TVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGC 164 + I + L ++ C C+FC +RN L P Sbjct: 4 AMTISYEVGNNLYLNFTNKCPCACTFC-------IRNHADGAYGSDPLWLEHE----PTM 52 Query: 165 EDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF 224 ++I+ + K IV G GEP D V ++ + + +++ ++T+G Sbjct: 53 DEIKADLDKRDLTKYDEIVFCGYGEPTERLDAVIEAAAFLREK-----GCKKLRINTNGL 107 Query: 225 VPNI--ARVGEEIGVML---AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG---L 276 I + +E+ + +ISL+A + + + ++P A R++ Sbjct: 108 GDLIHGRSIADELCTAMDVVSISLNAPTEK--DYMDVTRPRFP--DAFSALRNFTRDCVK 163 Query: 277 SNARRI---TFEYVMLKGINDSPRDALNLIKILK 307 + I + + + I S + A L +L+ Sbjct: 164 TGKAEIIMSVVDVIPQEQIEASRKVAEELGAVLR 197 >gi|296109240|ref|YP_003616189.1| Radical SAM domain protein [Methanocaldococcus infernus ME] gi|295434054|gb|ADG13225.1| Radical SAM domain protein [Methanocaldococcus infernus ME] Length = 429 Score = 39.5 bits (91), Expect = 0.90, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 64/195 (32%), Gaps = 28/195 (14%) Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167 + E+ R + V GC+L C FC + + D Sbjct: 100 LIERGRNIIQVRGHCGCNLNCIFCSVDEGEYSK-----------TRKNDYYVDLDHLIKE 148 Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227 + GR + G GEP + + + S +K I S VP Sbjct: 149 YKKLAEYKGRVKLEAHLDGQGEPSL-YYPLVDLVQELSS-----INKDGIVTMQSNGVPL 202 Query: 228 IARVGEEIGVMLAISLHAVS------NDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281 ++ +E+ LH ++ ++ ++ + Y +E ++D + ++ Sbjct: 203 TYKLIDELE---EAGLHRINLSINALDEKMAKMLAGRKDYKIEKILDIAEYI--KNSKIH 257 Query: 282 ITFEYVMLKGINDSP 296 + ++L IND Sbjct: 258 LLVAPLLLPNINDEE 272 >gi|167768087|ref|ZP_02440140.1| hypothetical protein CLOSS21_02632 [Clostridium sp. SS2/1] gi|167710416|gb|EDS20995.1| hypothetical protein CLOSS21_02632 [Clostridium sp. SS2/1] gi|291561083|emb|CBL39883.1| Pyruvate-formate lyase-activating enzyme [butyrate-producing bacterium SSC/2] Length = 300 Score = 39.5 bits (91), Expect = 0.90, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 52/157 (33%), Gaps = 34/157 (21%) Query: 214 KRRITLSTSGFVPN--IARVGEEIGVMLAISLHAVSND------LRNILVPINRKYPLEM 265 K + T+G++ + ++L H S+ + N L+ N + + Sbjct: 156 KIHTAIETTGYIKKEIFRELAPMFDLLLFDVKHYDSDKHYEGTHVHNELIIENLAWAISQ 215 Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGC 324 I+ P ++ NDS DA + +L + A K+ L+PF+ + Sbjct: 216 GIEVLPRIP-------------VIPDFNDSLDDAKGIAALLNQVGAKKVQLLPFHQFGEN 262 Query: 325 EY------------LCSDQKDIVTFSECIKRSGYSSP 349 +Y +D+ + +G Sbjct: 263 KYHLLGKTYSYENVKALHPEDLTDYQRIFLDAGIDCF 299 >gi|167754788|ref|ZP_02426915.1| hypothetical protein CLORAM_00292 [Clostridium ramosum DSM 1402] gi|237735925|ref|ZP_04566406.1| pyruvate formate-lyase activating enzyme [Mollicutes bacterium D7] gi|167705620|gb|EDS20199.1| hypothetical protein CLORAM_00292 [Clostridium ramosum DSM 1402] gi|229381670|gb|EEO31761.1| pyruvate formate-lyase activating enzyme [Coprobacillus sp. D7] Length = 255 Score = 39.5 bits (91), Expect = 0.90, Method: Composition-based stats. Identities = 35/242 (14%), Positives = 76/242 (31%), Gaps = 48/242 (19%) Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC L C FC+ + E I + Sbjct: 36 HGCPLRCKFCHNPD---------------TWANAKSTMEMTPQEAIAKALKYKSYWGNDG 80 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEEIG 236 + + GEPL D + + + G++ + TSG P ++ E + Sbjct: 81 GITVSGGEPLLQIDFLIELFK-LAKKEGIN-----TCIDTSGGNFTREEPFFSKFNELMK 134 Query: 237 VM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 L + L + + L + ++D ++ ++ + +V++ GI+D Sbjct: 135 YTDLLLVDLKHIDSTQHQELTGKGN----DNILDMAKYLSTINK--PVWIRHVLVPGISD 188 Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWP-------GCEYL-----CSDQKDIVTFSEC 340 L K + + K+ ++P++ G Y +Q+ I ++ Sbjct: 189 KDEYLTELDKFISTLNNVKKVEVLPYHTLGVFKWEELGIPYQLDGINPPNQERIDNANKL 248 Query: 341 IK 342 + Sbjct: 249 LH 250 >gi|158521649|ref|YP_001529519.1| radical SAM domain-containing protein [Desulfococcus oleovorans Hxd3] gi|158510475|gb|ABW67442.1| Radical SAM domain protein [Desulfococcus oleovorans Hxd3] Length = 313 Score = 39.5 bits (91), Expect = 0.90, Method: Composition-based stats. Identities = 38/218 (17%), Positives = 75/218 (34%), Gaps = 26/218 (11%) Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR-----KISNIVMMGMGEPLCNFD- 195 T + I Q+ + S D + ++ R + I + G GEP N D Sbjct: 34 CTYDCIYCQLGKSSSKTVKRLPYRDADTVLAQLFERLEKIDRPDCITIAGSGEPTLNSDI 93 Query: 196 -NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV--MLAISLHAVSNDLRN 252 V + +D + + T+G + + V ++ M+ SL A + ++ Sbjct: 94 GAVIAGIKQKTD--------IPVVVLTNGSLLSDPEVQSDLLAADMVIPSLDAWNPEMFA 145 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGI-PA 311 + R + + + + ++ E ++ GIN S DA ++ I PA Sbjct: 146 SINRPYRTVDFTTMTEGLVSF-SKAYGGQLWLEIFIMDGINASVDDARAFKPLVDRINPA 204 Query: 312 KINLIPFNPW---PGCEY-LCSDQKDIVTFSECIKRSG 345 + N P + + I F + R+ Sbjct: 205 VV---YVNTAVRPPEESFVKQASPAMIENFYRTLGRAH 239 >gi|268325623|emb|CBH39211.1| conserved hypothetical protein, nifB related [uncultured archaeon] Length = 304 Score = 39.5 bits (91), Expect = 0.91, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 59/179 (32%), Gaps = 25/179 (13%) Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVML 239 + + G GEPL N + ++ + LST+G I + E + Sbjct: 106 VAVAGPGEPLFN-EETFETFRLVKAEY----PHMMRCLSTNGLLLPERIDDLEELDIGTV 160 Query: 240 AISLHAVSNDLRNILV----PINRKYPLEMLIDACRH------YPGLSNARRITFEYVML 289 ++L+ V + + ++Y E + + I V++ Sbjct: 161 TVTLNTVDPAIGKDIYSVVNYHGKRYKGEEGAEILLKNQLEGIREAVKRKILIKVNTVLI 220 Query: 290 KGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEY---LCSDQKDIVTFSECIKRS 344 +ND + + K + + + N+IP P ++ Q++ + + Sbjct: 221 PTVND--EHIVEVAKKIAEMGVYMQNIIPL--IPQYKFAHITPPTQQEKEAIQDKCREY 275 >gi|331004679|ref|ZP_08328140.1| hypothetical protein HMPREF0491_03002 [Lachnospiraceae oral taxon 107 str. F0167] gi|330409504|gb|EGG88946.1| hypothetical protein HMPREF0491_03002 [Lachnospiraceae oral taxon 107 str. F0167] Length = 449 Score = 39.5 bits (91), Expect = 0.91, Method: Composition-based stats. Identities = 39/242 (16%), Positives = 86/242 (35%), Gaps = 32/242 (13%) Query: 110 EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169 EK+ L + C++ C +CY ++ + D + + Sbjct: 80 EKNLNRLVIHLTNDCNMRCGYCYANGG--------------AYYSQRSIMDKAVLDKLVD 125 Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASD---SMGLSFSKRRITLST---SG 223 I+NI G GEPL N++ ++ + I S + + +T T Sbjct: 126 RFFGEF-HIINNIQFFG-GEPLMNYELMEYACKIVSSIAKKRNYNITFGLVTNGTLIDCK 183 Query: 224 FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283 F+ + + I V ++ + ND+ ++ LI + + T Sbjct: 184 FIDLVKKF--NIQVTISYDGNPAVNDM-MRIMEDCSGSS--ELILKNAKWLKAETGQPNT 238 Query: 284 FEYVMLKGINDSPRDALNLIKILKGI--PAKINLIPFNPWPGCEYLCSDQKDIVTFSECI 341 E + D+ L+++K + + ++L+P C+Y +D+ F++ + Sbjct: 239 IEVTYNQYHVDAKVSILDIVKHIHDVIPDTFVHLVPAGGTKDCDY---AIEDLSMFADSV 295 Query: 342 KR 343 + Sbjct: 296 RE 297 >gi|153955752|ref|YP_001396517.1| hypothetical protein CKL_3138 [Clostridium kluyveri DSM 555] gi|219856120|ref|YP_002473242.1| hypothetical protein CKR_2777 [Clostridium kluyveri NBRC 12016] gi|146348610|gb|EDK35146.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555] gi|219569844|dbj|BAH07828.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 456 Score = 39.5 bits (91), Expect = 0.91, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 71/193 (36%), Gaps = 21/193 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC++ C+L C +C+ + AR+L+ G + ++ ++ S Sbjct: 95 ALCLNVAHDCNLKCKYCFADEGEYKG-------------ARALMSAHIGKKAVDFVIEKS 141 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV--- 231 RK I + G GEPL F +K+ + A + + K R T++T+ + N + Sbjct: 142 GPRKNIEIDLFG-GEPLMAFQCIKEIVEYAREQEVKNNKKIRFTMTTNAVMLNDEIMEYI 200 Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVML 289 ++L+I ND + + ++ +H + + + Sbjct: 201 DKNMGNIVLSIDGRKEINDKIRVRKDGGGTFNT--ILPKIKHMIEIRDKSKQYYVRGTFT 258 Query: 290 KGINDSPRDALNL 302 + D D L Sbjct: 259 RKNTDFFEDIKFL 271 >gi|113867935|ref|YP_726424.1| biotin synthase-related enzyme [Ralstonia eutropha H16] gi|113526711|emb|CAJ93056.1| biotin synthase-related enzyme [Ralstonia eutropha H16] Length = 367 Score = 39.5 bits (91), Expect = 0.91, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 57/154 (37%), Gaps = 28/154 (18%) Query: 225 VPNIARVGEEIGV----MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280 P+ R E + L + L V+ LR ++P P ++A + + Sbjct: 203 PPDDDRWFERMKAAGIDTLGMHLEVVTPALRERIMPGKAGVPPSRYMEAFKAAVAVFGRA 262 Query: 281 RITFEYVMLKGINDSPRDA----LNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKD 333 +++ Y++ G+ D+ LI++ G+ + +PF P G Sbjct: 263 QVS-TYIL-AGLGDTAEAILSISRELIEL--GVYPFV--VPFVPISGTPLEDHPAPSPAF 316 Query: 334 IVTFSE----CIKRSGYSSPIRTPRGLDILAACG 363 + + + + +G +R+ DI A CG Sbjct: 317 MQSILQPLGAMLSAAG----MRSS---DIKAGCG 343 >gi|15669156|ref|NP_247961.1| hypothetical protein MJ_0966 [Methanocaldococcus jannaschii DSM 2661] gi|41018404|sp|Q58376|Y966_METJA RecName: Full=Uncharacterized protein MJ0966 gi|1591630|gb|AAB98968.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM 2661] Length = 444 Score = 39.5 bits (91), Expect = 0.93, Method: Composition-based stats. Identities = 42/240 (17%), Positives = 85/240 (35%), Gaps = 48/240 (20%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC C FC LAR++ + + M + G K++ + Sbjct: 177 GCPRRCRFC---------------------LARAIYYPPRFRKLDDLMYLAEEGVKVNKV 215 Query: 183 VMMGMGEP-LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 + + P + ++ + + + D MG+ S + T ++ R+ + L I Sbjct: 216 NKVALIAPSVGDYKYIVELCNFL-DDMGVHISPSSLRADT--LNDDLMRILK--PKTLTI 270 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 + A S LR + R+ + ID + + ++ Y M+ ++ D Sbjct: 271 APEAGSERLREFIKKDIRERDIANAIDLAKKF----GVEKVKL-YFMVGIPTETDEDIEE 325 Query: 302 LIKILKGIP-------AKIN-LIPFNPWPGCEYLC-----SDQKDIVTFSECIKRSGYSS 348 LI + K + +N +IP P ++ S +K I + +K+ G Sbjct: 326 LINLTKKVKKEIRKVEISVNPMIP---KPHTDFEVEEFDLSSKKKIKYIEKALKKEGIRV 382 >gi|289167177|ref|YP_003445444.1| pyruvate-formate lyase activating enzyme [Streptococcus mitis B6] gi|288906742|emb|CBJ21576.1| pyruvate-formate lyase activating enzyme [Streptococcus mitis B6] Length = 264 Score = 39.5 bits (91), Expect = 0.94, Method: Composition-based stats. Identities = 33/213 (15%), Positives = 69/213 (32%), Gaps = 33/213 (15%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C +C+ N + + E + I Sbjct: 37 GCHMRCQYCH--------NPDTWAM-----ESNKSRERTVDDVLTEALRYRGFWGNKGGI 83 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF-----VPNIARVGEEIGV 237 + G GE L D + +L + G+ TL T + + + + V Sbjct: 84 TVSG-GEALLQIDFLI-ALFTKAKEHGI-----HCTLDTCALPFRNKPRYLEKFDKLMAV 136 Query: 238 M-LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 L + ++ ++ +V I AC Y + + +V++ G+ D Sbjct: 137 TDLVLLDIKEIDEEQHKIVTSQTN----KNILACAQYLS-DIGKPVWIRHVLVPGLTDRD 191 Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327 D + L K +K + K ++P++ ++ Sbjct: 192 DDLIELGKFVKTLKNVDKFEILPYHTMGEFKWR 224 >gi|150390308|ref|YP_001320357.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alkaliphilus metalliredigens QYMF] gi|229890435|sp|A6TR80|MIAB_ALKMQ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|149950170|gb|ABR48698.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alkaliphilus metalliredigens QYMF] Length = 476 Score = 39.5 bits (91), Expect = 0.94, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 63/194 (32%), Gaps = 23/194 (11%) Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT-GTQKLVRNLTAEEILLQVL 152 +E + + K ++ GC+ C++C T+ R+ +EI+ +V Sbjct: 164 DVWDKEGDIVEGLPVTRKYGLKAFINIMFGCNNFCTYCIVPHTRGRERSREVQEIIDEV- 222 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 L + + G + S G+ + G N L + + G+ Sbjct: 223 --EELAKNGTKEITLLGQNVNSYGKTLEEETDFG------NL------LKVLNKIEGI-- 266 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVM--LAISLHAVSNDLRNILVP-INRKYPLEMLIDA 269 RI TS + + V + LH N ++ +NRKY E ++ Sbjct: 267 --ERIRFMTSHPKDLSDSLISAMTVCTKVCAHLHLPFQAGSNDILKAMNRKYTKEAYLEL 324 Query: 270 CRHYPGLSNARRIT 283 +T Sbjct: 325 VEKVRSKVPNVALT 338 >gi|281358833|ref|ZP_06245305.1| pyruvate formate-lyase activating enzyme [Victivallis vadensis ATCC BAA-548] gi|281314701|gb|EFA98742.1| pyruvate formate-lyase activating enzyme [Victivallis vadensis ATCC BAA-548] Length = 237 Score = 39.5 bits (91), Expect = 0.94, Method: Composition-based stats. Identities = 38/213 (17%), Positives = 70/213 (32%), Gaps = 40/213 (18%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C +C+ N E+ + E + + + + Sbjct: 30 GCPLRCRYCH--------NPDTWELGG--------GMEISSAEVVGKIESCRNFIRSGGV 73 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV----- 237 + G GEPL + + L G L T+G VP + V Sbjct: 74 TLSG-GEPLMQPEFARDILER-CARAGF-----HTALDTAGSVP----LERSRPVIDRAD 122 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 +L + + A++ L L + + L +D C AR + +V++ G Sbjct: 123 LLLLDIKALNPALCRELTGRDNRNTLA-TLDYCEE-----TARPVWIRHVLVPGFTLLRE 176 Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEYLC 328 L LK +I+L+P++ ++ Sbjct: 177 RLEELAAFLKPYRCIRRIDLLPYHKLGAYKWEQ 209 >gi|172056644|ref|YP_001813104.1| pyruvate formate-lyase activating enzyme [Exiguobacterium sibiricum 255-15] gi|171989165|gb|ACB60087.1| pyruvate formate-lyase activating enzyme [Exiguobacterium sibiricum 255-15] Length = 242 Score = 39.5 bits (91), Expect = 0.95, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 70/212 (33%), Gaps = 37/212 (17%) Query: 101 VEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSL 157 +E+ + V +Q GC L C +C+ T R+++A EI+ + RS Sbjct: 9 HSVESCGTVDGPGIRFIVFTQ-GCPLRCQYCHNADTWEFGCGRSVSATEIIEEAESYRSF 67 Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217 G I G GEPL + ++ +L A Sbjct: 68 FEATGGG-----------------ITFSG-GEPLAQPEFLEAALREAKQK------GMHT 103 Query: 218 TLSTSG--FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPG 275 + T+G NI R+ + ++L + + + + IL + L Sbjct: 104 VIDTAGSVVPKNIDRILDYTDLVL-LDIKHIDDATCRILTGRSNANTLAFAKRLAER--- 159 Query: 276 LSNARRITFEYVMLKGINDSPRDALNLIKILK 307 + +V++ G+ + + ++ Sbjct: 160 ---NIPVWIRHVLVPGLTMTETFLRQTGEFIR 188 >gi|296877199|ref|ZP_06901239.1| pyruvate formate-lyase activating enzyme [Streptococcus parasanguinis ATCC 15912] gi|296431719|gb|EFH17526.1| pyruvate formate-lyase activating enzyme [Streptococcus parasanguinis ATCC 15912] Length = 258 Score = 39.5 bits (91), Expect = 0.97, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 84/249 (33%), Gaps = 35/249 (14%) Query: 85 TRKWLLRFPARCIGGPVEIET-VYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLT 143 TR + I I T V++ GC L C +C R + Sbjct: 4 TRGIIFNIQHFSIHDGPGIRTTVFLK-------------GCPLRCPWCSNPES--QR-MN 47 Query: 144 AEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG--RKISNIVMMGMGEPLCNFDNVKKSL 201 E +L V A G ++I V+ + + + + GE F+ K+L Sbjct: 48 PEPMLDAVTKAPGTTGQEKTVDEIIDEVMKDIDFYEESGGGMTLSGGEIFAQFE-FAKAL 106 Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV--MLAISLHAVSNDLRNILVPINR 259 A+ GL + T+ FV + + + I + L ++ + + Sbjct: 107 LKAAKERGL-----HTAIETTAFVEH-EKFIDLIQYVDFIYTDLKHYNS------LKHKK 154 Query: 260 KYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPF 318 K + + + ++I ++ NDS DA + + ++ L+PF Sbjct: 155 KVGVHNSLIIENIHYAFKEKKKIVLRIPVIPQFNDSLADAEEFSTLFNSLDIDQVQLLPF 214 Query: 319 NPWPGCEYL 327 + + +Y Sbjct: 215 HQFGENKYK 223 >gi|150400105|ref|YP_001323872.1| radical SAM domain-containing protein [Methanococcus vannielii SB] gi|150012808|gb|ABR55260.1| Radical SAM domain protein [Methanococcus vannielii SB] Length = 458 Score = 39.5 bits (91), Expect = 0.97, Method: Composition-based stats. Identities = 30/218 (13%), Positives = 73/218 (33%), Gaps = 27/218 (12%) Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167 + ++ + + GC++ C FC N + + L+ ++ D Sbjct: 124 LIDRGTNVIQIRGLSGCNINCPFCSVDEG----NHSKSRKNDYYVDMDYLVSEYKKIADF 179 Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227 +G + G GEP + + + + ++ G I + Sbjct: 180 KGNTKLEAH-------LDGQGEPSL-YYPLLELVQELNEINGPKKGIVSIQSNGVNLNEK 231 Query: 228 -IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286 I + + + +S++A ++ + + + Y + +++ Y S + Sbjct: 232 LIDDLADSGLHRINMSINA-IDEKLSKGLSGKKDYDINKILE-ISEYIKNS-KIHLLIAP 288 Query: 287 VMLKGINDSPRDALNLIKILKGIPAKINL---IPFNPW 321 ++L ND+ + K + +NL IP N Sbjct: 289 ILLPNYNDT--------EFKKVLDYAVNLQQKIPQNTI 318 >gi|123969432|ref|YP_001010290.1| putative organic radical activating protein [Prochlorococcus marinus str. AS9601] gi|123199542|gb|ABM71183.1| possible organic radical activating enzyme [Prochlorococcus marinus str. AS9601] Length = 225 Score = 39.5 bits (91), Expect = 0.97, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 27/107 (25%) Query: 122 VGCSLTCSFCYTG---TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 GC + CS+C T +K +++ E+I+ ++ +AR F Sbjct: 33 AGCKVGCSWCDTKNSWDEKKHPSISIEKIIDRIKIARKKGASF----------------- 75 Query: 179 ISNIVMMGMGEPL-CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF 224 V+ G GEPL N DN K++ + MG +I + TSG Sbjct: 76 ---CVITG-GEPLQHNLDNFCKAIKKMT--MGEEQKPIKIHIETSGV 116 >gi|242277946|ref|YP_002990075.1| glycyl-radical enzyme activating protein family [Desulfovibrio salexigens DSM 2638] gi|242120840|gb|ACS78536.1| glycyl-radical enzyme activating protein family [Desulfovibrio salexigens DSM 2638] Length = 309 Score = 39.5 bits (91), Expect = 0.98, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 30/130 (23%) Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 + H +RN ++ N + L+ N + MLKG+ND Sbjct: 190 HMNSERHREITGVRNEMILQNLIWLLD-------------NRYNVKIRMPMLKGVNDGEE 236 Query: 298 DALNLIKILKG----IPAK-INLIPF-----NPWPGCEYLCS-------DQKDIVTFSEC 340 + L L+++LK K ++L+P+ N + + D+ + Sbjct: 237 EILQLVELLKPYKDLKNFKGVDLLPYHKMGVNKYTQLGWEYPVEGDPKLSNADLERIEQA 296 Query: 341 IKRSGYSSPI 350 I + + + Sbjct: 297 ITKYNFPVSV 306 >gi|20094494|ref|NP_614341.1| Fe-S oxidoreductase [Methanopyrus kandleri AV19] gi|19887599|gb|AAM02271.1| Fe-S oxidoreductase [Methanopyrus kandleri AV19] Length = 322 Score = 39.5 bits (91), Expect = 0.98, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 71/234 (30%), Gaps = 39/234 (16%) Query: 86 RKWLLRFPARCIGGPVEIET----VYIPEKSR---GTLCVSSQVG-CSLTCSFCYTGTQK 137 K ++ A + E VY P SR +L + G C+ C +C Sbjct: 67 VKLAVKLGAEVELEGLSSEDRRPLVYGPVPSRRLGTSLGIDLPRGMCTHDCEYCSV---G 123 Query: 138 LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC--NFD 195 + R ++ E E + + G+GEP N Sbjct: 124 VSRRVSPHE-----------RFTVDPVAVREELSETLRRCDPDAVTFAGVGEPTLCANLR 172 Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILV 255 + + + + + L+ S +V + + V +A SL DL + Sbjct: 173 EIAEEIRPLVE----GVGAEVVLLTNSTWVS---ECADVVDVAVA-SLDCAREDLYRTIN 224 Query: 256 PINRKYPLEMLIDACRHYPGLSNARRITFEYVML---KGINDSPRDALNLIKIL 306 + LE L++ + + E ++ K N P L +L Sbjct: 225 RPHPDMSLEHLVEEL----SQCDPGDVVVEVLLCRVGKITNADPDHLRELADLL 274 >gi|331268523|ref|YP_004395015.1| glycerol dehydratase activator [Clostridium botulinum BKT015925] gi|329125073|gb|AEB75018.1| glycerol dehydratase activator [Clostridium botulinum BKT015925] Length = 313 Score = 39.5 bits (91), Expect = 0.99, Method: Composition-based stats. Identities = 11/83 (13%), Positives = 31/83 (37%), Gaps = 14/83 (16%) Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------ 327 I +++G N + ++ + K + +I+L+P++ + +Y Sbjct: 229 IIIRVPVIEGFNSDEKSIRDIAEFAKTLKKVKRIDLLPYHSYGENKYQTIGRNYFLKNLK 288 Query: 328 CSDQKDIVTFSECIKRSGYSSPI 350 + + F + ++ G I Sbjct: 289 PPSNEKMNCFRKIVQGRGLFCSI 311 >gi|167771421|ref|ZP_02443474.1| hypothetical protein ANACOL_02787 [Anaerotruncus colihominis DSM 17241] gi|167666061|gb|EDS10191.1| hypothetical protein ANACOL_02787 [Anaerotruncus colihominis DSM 17241] Length = 457 Score = 39.5 bits (91), Expect = 0.99, Method: Composition-based stats. Identities = 37/214 (17%), Positives = 73/214 (34%), Gaps = 25/214 (11%) Query: 100 PVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT-QKLVRNLTAEEILLQVLLARSLL 158 IE V + + GC C++C + R+ ++L + AR+L+ Sbjct: 150 GEIIEGVPLRRSGSIKANLPVMYGCDNFCTYCIVPYVRGRERSRNPGDVLNE---ARALV 206 Query: 159 GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRIT 218 G + G + S G G+ EP NF + + ++ D + F Sbjct: 207 GQGYRELLLLGQNVNSYG--------KGLSEP-INFAALLRRVNEIEDDFWIRFMTSHPK 257 Query: 219 LSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILV-PINRKYPLEMLIDACRHYPGLS 277 T + IA + + +H + ++ +NR Y + ++ + Sbjct: 258 DCTHELIDTIAACNK-----VCRHIHLPVQSGSDRILAAMNRHYTVAHYLELIDYARARI 312 Query: 278 NARRITFEYVMLKGI----NDSPRDALNLIKILK 307 +TF ++ G L LIK ++ Sbjct: 313 PG--VTFSSDIIVGFPGETRADFEQTLELIKRVR 344 >gi|313673576|ref|YP_004051687.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Calditerrivibrio nitroreducens DSM 19672] gi|312940332|gb|ADR19524.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Calditerrivibrio nitroreducens DSM 19672] Length = 230 Score = 39.5 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 57/152 (37%), Gaps = 35/152 (23%) Query: 102 EIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF 161 EIETV + + C +GC+L C +CY + L Sbjct: 8 EIETVSLTNFTGKVACTVFTIGCNLRCRYCYNKSLVLK---------------------T 46 Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221 DIE + + NI + G GEPL ++ ++K L D S I L T Sbjct: 47 EKPVDIEKIRDKIKTLPLKNIAITG-GEPLLHY-SLKDFLYFLKD------SGFEIKLDT 98 Query: 222 SGFVPNIARVGEEIGVML----AISLHAVSND 249 +G P R+ + L A+ + A ++D Sbjct: 99 NGTFP--ERLQNILDKKLIDYVAVDIKAFTDD 128 >gi|307545567|ref|YP_003898046.1| molybdenum cofactor biosynthesis protein A [Halomonas elongata DSM 2581] gi|307217591|emb|CBV42861.1| molybdenum cofactor biosynthesis protein A [Halomonas elongata DSM 2581] Length = 330 Score = 39.5 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 63/195 (32%), Gaps = 31/195 (15%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C C +C + + QVL L ++ I G Sbjct: 24 CDFRCVYCMSEEMTFLPR-------EQVLTLEELSLVARAFTELGVEKIRLTG------- 69 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMG--LSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 GEPL V++ + +G +T + +G + + E L I Sbjct: 70 ----GEPL-----VRRDIDRLVADIGSLPGLKDFAMTTNGAGLGKYASLLREGGLQRLNI 120 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 S+ ++ + L + + + A R + RI V+LKG ND + + Sbjct: 121 SIDSLDPERFRRLTRTGNLHKVIDGMRAARE----AGFERIKLNAVILKGRND--DEVIP 174 Query: 302 LIKILKGIPAKINLI 316 L+ + I+ I Sbjct: 175 LVDFARREGVDISFI 189 >gi|260681933|ref|YP_003213218.1| 4-hydroxyphenylacetate decarboxylase activating subunit [Clostridium difficile CD196] gi|260685531|ref|YP_003216664.1| 4-hydroxyphenylacetate decarboxylase activating subunit [Clostridium difficile R20291] gi|260208096|emb|CBA60347.1| 4-hydroxyphenylacetate decarboxylase, activating subunit [Clostridium difficile CD196] gi|260211547|emb|CBE01729.1| 4-hydroxyphenylacetate decarboxylase, activating subunit [Clostridium difficile R20291] Length = 326 Score = 39.5 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 62/187 (33%), Gaps = 23/187 (12%) Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236 R + G GEPL + + + ++ I S ++ ++I Sbjct: 144 RSNGGVTFSG-GEPLLQHEFL---HEVLLKCHEVNI-HTAIETSACVSNEVFNKIFKDID 198 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 H R Y +++++ + R+ ++ G NDS Sbjct: 199 FAFIDIKHM----DREKHKEQTGVYN-DLILENISNLANSDWNGRLVLRVPVISGFNDSA 253 Query: 297 RDALNLIKIL-KGIPAKINLIPFNPWPGC-------EYLCSDQKDI-----VTFSECIKR 343 + ++I + K +INL+PF+ EY SD+ DI + Sbjct: 254 ENISDIISFMHKNNLIEINLLPFHRLGESKWIQLGKEYEYSDKGDIDEEHLEELQDIFLD 313 Query: 344 SGYSSPI 350 +G + + Sbjct: 314 NGIACYV 320 >gi|254973814|ref|ZP_05270286.1| 4-hydroxyphenylacetate decarboxylase, activating subunit [Clostridium difficile QCD-66c26] gi|255091201|ref|ZP_05320679.1| 4-hydroxyphenylacetate decarboxylase, activating subunit [Clostridium difficile CIP 107932] gi|255312858|ref|ZP_05354441.1| 4-hydroxyphenylacetate decarboxylase, activating subunit [Clostridium difficile QCD-76w55] gi|255515617|ref|ZP_05383293.1| 4-hydroxyphenylacetate decarboxylase, activating subunit [Clostridium difficile QCD-97b34] gi|255648711|ref|ZP_05395613.1| 4-hydroxyphenylacetate decarboxylase, activating subunit [Clostridium difficile QCD-37x79] gi|306518831|ref|ZP_07405178.1| 4-hydroxyphenylacetate decarboxylase, activating subunit [Clostridium difficile QCD-32g58] gi|317411750|sp|C9YHW3|HPDA_CLODR RecName: Full=4-hydroxyphenylacetate decarboxylase activating enzyme; Short=Hpd-AE gi|317411752|sp|C9XIS7|HPDA_CLODC RecName: Full=4-hydroxyphenylacetate decarboxylase activating enzyme; Short=Hpd-AE Length = 316 Score = 39.5 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 62/187 (33%), Gaps = 23/187 (12%) Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236 R + G GEPL + + + ++ I S ++ ++I Sbjct: 134 RSNGGVTFSG-GEPLLQHEFL---HEVLLKCHEVNI-HTAIETSACVSNEVFNKIFKDID 188 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 H R Y +++++ + R+ ++ G NDS Sbjct: 189 FAFIDIKHM----DREKHKEQTGVYN-DLILENISNLANSDWNGRLVLRVPVISGFNDSA 243 Query: 297 RDALNLIKIL-KGIPAKINLIPFNPWPGC-------EYLCSDQKDI-----VTFSECIKR 343 + ++I + K +INL+PF+ EY SD+ DI + Sbjct: 244 ENISDIISFMHKNNLIEINLLPFHRLGESKWIQLGKEYEYSDKGDIDEEHLEELQDIFLD 303 Query: 344 SGYSSPI 350 +G + + Sbjct: 304 NGIACYV 310 >gi|145341975|ref|XP_001416074.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144576298|gb|ABO94366.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 324 Score = 39.1 bits (90), Expect = 1.0, Method: Composition-based stats. Identities = 43/274 (15%), Positives = 82/274 (29%), Gaps = 66/274 (24%) Query: 111 KSRGTLCVSSQVGCSLTCSFCY-----------TGTQKLVRNLTAEEILLQVLLARSLLG 159 G C+ GC C+FC T R ++ +I+ + R Sbjct: 79 DGHGIRCIVFLQGCEKRCAFCCNVDSTHAALAKTPNPG--RTMSVNDIVEILKRNRKYYA 136 Query: 160 DFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITL 219 G + GE L ++++I + +GL I Sbjct: 137 SSEGGGLT-----------------LSGGECLL-QPAFVEAVAIKTHEIGL---TVAIDT 175 Query: 220 STSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNA 279 + SG RV + V+L + + I R+Y + R + N Sbjct: 176 AASGDAETWNRVLPHVDVVLLCVKSSSLEKYKAITGTTEREY------ETMRAFLKELNR 229 Query: 280 RRI--TFEYVMLKG---------INDSPRDALNLIKILKGIPAK--INLIPFNPWPGCEY 326 RR+ +V++ ND L ++ K I L+P++ + ++ Sbjct: 230 RRVKTWLRFVLMSDPDSRFVDFRTNDENE-LRGLAELAKTHECVEGIELLPYHRFGEFKF 288 Query: 327 ------------LCSDQKDIVTFSECIKRSGYSS 348 D ++I ++ G + Sbjct: 289 SELGLEYKLEGMRTPDAEEIHAAQTFLQSQGVTV 322 >gi|242237917|ref|YP_002986098.1| lysine 2,3-aminomutase YodO family protein [Dickeya dadantii Ech703] gi|242129974|gb|ACS84276.1| lysine 2,3-aminomutase YodO family protein [Dickeya dadantii Ech703] Length = 348 Score = 39.1 bits (90), Expect = 1.0, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 74/231 (32%), Gaps = 48/231 (20%) Query: 85 TRKWLLRFPARCIGGPVE-----IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLV 139 T K P++ + + +R L V GC++ C +C Sbjct: 78 TSKAEFLLTPGFTNDPLDEQRSVVPGLLHKYHNRALLLVKG--GCAVNCRYC------FR 129 Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL----CNFD 195 R+ +E + + ++ I+ G G+PL D Sbjct: 130 RHFPYQE------------NQGSKANWRQALDYIRQHPELDEIIFSG-GDPLMAKDHELD 176 Query: 196 NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILV 255 + L + L R+ + +P + A+SL + L+ +LV Sbjct: 177 GLLTGLEEITHLKRLRI-HSRLPV----VIPA--------RITEALSLRLAQSRLQILLV 223 Query: 256 PI-NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 N ++ + H + + + V+L+G+NDS A L + Sbjct: 224 THINHANEIDAELAQGLHRLRRA-GVTLLNQSVLLRGVNDS---ADELANL 270 >gi|305663030|ref|YP_003859318.1| Radical SAM domain protein [Ignisphaera aggregans DSM 17230] gi|304377599|gb|ADM27438.1| Radical SAM domain protein [Ignisphaera aggregans DSM 17230] Length = 267 Score = 39.1 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 42/242 (17%), Positives = 95/242 (39%), Gaps = 26/242 (10%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLA-RSLLGDFPGCEDIEGMVIPSVGRKISNI 182 C+ C C + + + EI ++ R + + + + + + + + I Sbjct: 24 CNFRCLGCI-RRLGIWDSHLSREIRDILMSFYRDVESVYLSIDALRSIALYTKDFLDARI 82 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLA 240 ++G GEP + ++ + I + G+ I + T+G+ I +G+ + + Sbjct: 83 AILGGGEPTAD-KMFREVVEILN---GIDM---EIRVLTNGYNLDRYIDILGD-VDAYIV 134 Query: 241 ISLHAVSNDLRNI-LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 +S+ ++ R+ L R L+ ++ RI+ E + + G ND P D Sbjct: 135 LSIKSID---RDKHLFYTGR--DLDTILKNFVEVYRR--GLRISIETIDIPGFND-PSDI 186 Query: 300 LNLIKILKGIPAKINLI--PFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLD 357 L + I I LI + P P + + +++ + ++ + +R GL+ Sbjct: 187 EKLAMYISSIDPSIELIIDSYIPVPQTPWGRPSETEMLEAGKRARKYLKNVYLR---GLE 243 Query: 358 IL 359 I Sbjct: 244 IS 245 >gi|294792850|ref|ZP_06757997.1| radical SAM domain protein [Veillonella sp. 6_1_27] gi|294456749|gb|EFG25112.1| radical SAM domain protein [Veillonella sp. 6_1_27] Length = 575 Score = 39.1 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 44/266 (16%), Positives = 74/266 (27%), Gaps = 47/266 (17%) Query: 60 VRHLLNQHFSIIYPEIVDEKISCDG-------------TRKWLLRFPARCIGGPVEIETV 106 +R L + P + S DG T K R G + Sbjct: 186 LRQ-LADISGVYVPSLYVPIYSEDGEFKGYDIAEGVPKTIK---RHFEMLTSGGETVVAT 241 Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166 + + GC C FC G V + +IL + + LG G Sbjct: 242 NY-TEFGAMYIIEVARGCGRHCRFCMAGYCFRVPRVRPLDILKEGVERAEKLGKKVGLMG 300 Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226 P V L N+ I S M S + R T V Sbjct: 301 AAISDYPEVDE-------------LVNY--------IRSKDMRYSCASLRADSLTQAVVD 339 Query: 227 NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286 + + + I+ S LR ++ N+ E + S + + Y Sbjct: 340 G---LADSGQKTITIAPETGSERLRRVI---NKGIS-EEHLQNAATLSAKSGIQHMRL-Y 391 Query: 287 VMLKGINDSPRDALNLIKILKGIPAK 312 +M+ ++ D ++ + + A Sbjct: 392 IMIGLPTETDEDIEAIVGLAERTQAH 417 >gi|156937491|ref|YP_001435287.1| radical SAM domain-containing protein [Ignicoccus hospitalis KIN4/I] gi|156566475|gb|ABU81880.1| Radical SAM domain protein [Ignicoccus hospitalis KIN4/I] Length = 352 Score = 39.1 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 83/236 (35%), Gaps = 41/236 (17%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 TL VS C+ C FC++ D D + + + Sbjct: 12 TLRVSVTERCNFNCIFCHSEGAG------------------RGSFDELSVNDYDMIAEAT 53 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASD--SMGLSFSKRRITLSTSGF-VPNIARV 231 + + G GEPL D + I G I+++T+GF +P Sbjct: 54 SRLGLKYVKFTG-GEPLLRSD--LE--EIIHSFKEHGF----EEISITTNGFLLPERTEG 104 Query: 232 GEEIGVM-LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 +E GV + +SLH++ R I L +++ L N + V+L+ Sbjct: 105 LKEAGVSWINVSLHSL---KRQRFRRITGVDALNRVLNGIEK--ALENGIEVRVNVVVLR 159 Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEY---LCSDQKDIVTFSECIKR 343 GIN + ++K G A +++I +P + ++ I + ++ Sbjct: 160 GIN--EDEVEEIVKYAIGKGASVHVIELHPVGNGAHIFRERHSREPIERLKKWLEE 213 >gi|57641163|ref|YP_183641.1| molybdenum cofactor biosynthesis protein A [Thermococcus kodakarensis KOD1] gi|57159487|dbj|BAD85417.1| probable molybdenum cofactor biosynthesis protein A [Thermococcus kodakarensis KOD1] Length = 419 Score = 39.1 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 81/229 (35%), Gaps = 23/229 (10%) Query: 85 TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTA 144 T++ +L + + ++ + V GC+L+C FC R Sbjct: 86 TKRKVLYIHEGLDVPLLGYNAFGLIDRGTNLIQVRGVSGCNLSCVFCSVDEGPYSR---- 141 Query: 145 EEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV--KKSLS 202 L V+ L+ F I+G + + + G GEPL V ++L Sbjct: 142 TRKLDYVVDIDYLMKWFDEVARIKGKGLEAH--------LDGQGEPLIYPFRVELVQALR 193 Query: 203 IASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYP 262 S + + T + + E + +S+H++ D +L+ + Y Sbjct: 194 --EHPNVSVISMQ--SNGTLLNDKLVEELAEAGLDRVNLSIHSLDPDKAKMLMGR-KDYD 248 Query: 263 LEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA 311 L+ ++D + V++ G+ND+ A I+ + I A Sbjct: 249 LQHVLDMAEALVNA--GIDVLIAPVIIFGVNDNE--AEAFIEFARKIGA 293 >gi|317497375|ref|ZP_07955698.1| glycyl-radical enzyme activating protein family [Lachnospiraceae bacterium 5_1_63FAA] gi|316895444|gb|EFV17603.1| glycyl-radical enzyme activating protein family [Lachnospiraceae bacterium 5_1_63FAA] Length = 304 Score = 39.1 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 81/224 (36%), Gaps = 44/224 (19%) Query: 110 EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169 EKS T C+S C+ C Q + EI+ QVL G + G Sbjct: 84 EKSLCTDCLS----CTKVCPAMAMKQQGKP--MEISEIIDQVLRQELFYHHGEGGLTVSG 137 Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN-- 227 GEPL + D + + + ++ + T G+ Sbjct: 138 ------------------GEPLSHGDWL---IRLLKEAKKHRL---HTAIETCGYASYEV 173 Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKY---PLEMLIDACRHYPGLSNARRITF 284 + V + V + + +++++ +++Y ++++D + + +IT Sbjct: 174 LKEVINYLDV-IFFDIKSMNDEK-------HKRYTGKSNQIILDNFKQLVQDAKTTKITA 225 Query: 285 EYVMLKGINDSPRDALNLIKIL-KGIPAKINLIPFNPWPGCEYL 327 ++ G ND+ + + + + KG ++P++ + +Y Sbjct: 226 RTPVIPGFNDTVEELEEIQRFVAKGKNVSYEMLPYHRFGKGKYE 269 >gi|149254|gb|AAA25107.1| nitrogen fixation B (nifB) [Klebsiella pneumoniae] Length = 468 Score = 39.1 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 21/148 (14%), Positives = 55/148 (37%), Gaps = 20/148 (13%) Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221 P ++ + ++S + + G G+PL N ++L + + ++ LST Sbjct: 82 PEQAVVKVRQVAQAIPQLSVVGIAGPGDPLANIARTFRTLELIRE----QLPDLKLCLST 137 Query: 222 SG--FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPI----NRKYP--------LEMLI 267 +G + R+ + + ++++ + ++ + +Y + + Sbjct: 138 NGLMLPDAVDRLLDVGVDHVTVTINTLDAEIAAQIYAWLWLDGERYSGREGGEILIARQL 197 Query: 268 DACRHYPGLSNARRITFEYVMLKGINDS 295 + R + V++ GINDS Sbjct: 198 EGVRRLTAK--GVLVKINSVLIPGINDS 223 >gi|304439709|ref|ZP_07399609.1| radical SAM protein [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371815|gb|EFM25421.1| radical SAM protein [Peptoniphilus duerdenii ATCC BAA-1640] Length = 305 Score = 39.1 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 69/205 (33%), Gaps = 20/205 (9%) Query: 104 ETVY-IPEKSRGTLCVSSQVGCSLT-CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF 161 E VY IP K G C + C + C FC I QV + + D Sbjct: 16 EKVYKIPIKVEGLSCPNRDGTCGVGGCIFCGEEGGSFE--NREGSIKEQVQKNIAHIEDR 73 Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221 + + E + VK S I G++ S R T Sbjct: 74 YNAHKFIAYIQNYTATYMELENFKKTIE-----EAVKASERIV----GVNISA-RPDFLT 123 Query: 222 SGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281 G + + ++ E+ V L + L + LV INR + L IDA + R Sbjct: 124 DGHLDYLEKLNEKYMVTLEVGLQTPNYHT---LVKINRGHLLSDYIDAVQRI--KRRGLR 178 Query: 282 ITFEYVMLKGINDSPRDALNLIKIL 306 I+ ++L D DA+ I+ Sbjct: 179 ISTH-LILNLPYDDDLDAIESANII 202 >gi|251781842|ref|YP_002996144.1| pyruvate formate-lyase activating enzyme [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390471|dbj|BAH80930.1| pyruvate formate-lyase activating enzyme [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|322411188|gb|EFY02096.1| Pyruvate formate-lyase activating enzyme [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] gi|323126656|gb|ADX23953.1| Pyruvate formate-lyase activating enzyme [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 287 Score = 39.1 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 30/236 (12%), Positives = 70/236 (29%), Gaps = 49/236 (20%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C +C+ N E+ + E + K I Sbjct: 59 GCKMRCQYCH--------NPDTWEM-----ETNNSKLRTVNDVLKEALQYKHFWGKKGGI 105 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--------PNIARVGEE 234 + G GE + D +L +++ L TL T GF + ++ Sbjct: 106 TVSG-GEAMLQID-FITAL--FTEAKKLGI---HTTLDTCGFAYRPTPEYHEVLDKLLAV 158 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 L + ++ ++ +V + Y + +V++ G+ D Sbjct: 159 TD--LILLDLKEIDEEQHKIVTRQPNQNILEF----ARYLS-DKQIPVWIRHVLVPGLTD 211 Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVT 336 + L + +K + K ++P++ ++ ++ + Sbjct: 212 IDDHLVRLGEFVKTLKNVDKFEVLPYHTMGEFKWRELGIPYQLEGVKPPTKERVQN 267 >gi|295093453|emb|CBK82544.1| Radical SAM superfamily. [Coprococcus sp. ART55/1] Length = 219 Score = 39.1 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 64/189 (33%), Gaps = 27/189 (14%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C +C FC T+K N T L P E++ + I+ +V Sbjct: 37 CPCSCVFCLRQTKKQQENNTLW-----------LKDGEPSVEEVLKLFSKYDLNVINELV 85 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIA------RVGEEIGV 237 G GEPL ++V + ++ ++ L+T G I + I Sbjct: 86 FCGFGEPLERLEDVCAVIDSLKNTY----PNLKVRLNTIGLANLIYGRDVTPELEGRID- 140 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI--NDS 295 ++ISL+A L +Y + +A + + LS +++ + D Sbjct: 141 TVSISLNAPDEKEFLELTRS--RYGI-QSYEAIKEFAVLSKRYVPNVVMTVVEKVMPEDK 197 Query: 296 PRDALNLIK 304 + K Sbjct: 198 IEKCRQICK 206 >gi|315607677|ref|ZP_07882671.1| GntS protein [Prevotella buccae ATCC 33574] gi|315250613|gb|EFU30608.1| GntS protein [Prevotella buccae ATCC 33574] Length = 210 Score = 39.1 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 69/187 (36%), Gaps = 43/187 (22%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L CSFC T + R +T++E++ V G P D R + Sbjct: 35 GCNLACSFCDTDFRAY-REMTSDEVVNTV------KGILPSFVDNRSGEGVGTARSSVLV 87 Query: 183 VMMGMGEPLCNFD-NVKKSL------SIASDSMGLSFSKRRITLSTSGFVPNIARV---- 231 V+ G GEP D ++ +L +A +S G T PN+ + Sbjct: 88 VLTG-GEPTLQVDFDLIDALHHAGFPEVAMESNG-----------TKEPPPNLDWLTVSP 135 Query: 232 GEEIGVMLAISLHAVSND--------LRNI---LVPINRKYPL--EMLIDACRHYPGLSN 278 E++ V L + ++ +R L P + P+ +I AC Y Sbjct: 136 KEQVSVNRCNELKCLFDESGRADDCGIRADFYYLQPCDTGDPVRNAEIIAACTEYIKQHP 195 Query: 279 ARRITFE 285 +++ + Sbjct: 196 KWQLSLQ 202 >gi|288924671|ref|ZP_06418608.1| radical SAM [Prevotella buccae D17] gi|288338458|gb|EFC76807.1| radical SAM [Prevotella buccae D17] Length = 206 Score = 39.1 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 69/187 (36%), Gaps = 43/187 (22%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+L CSFC T + R +T++E++ V G P D R + Sbjct: 31 GCNLACSFCDTDFRAY-REMTSDEVVNTV------KGILPSFVDNRSGEGVGTARSSVLV 83 Query: 183 VMMGMGEPLCNFD-NVKKSL------SIASDSMGLSFSKRRITLSTSGFVPNIARV---- 231 V+ G GEP D ++ +L +A +S G T PN+ + Sbjct: 84 VLTG-GEPTLQVDFDLIDALHHAGFPEVAMESNG-----------TKEPPPNLDWLTVSP 131 Query: 232 GEEIGVMLAISLHAVSND--------LRNI---LVPINRKYPL--EMLIDACRHYPGLSN 278 E++ V L + ++ +R L P + P+ +I AC Y Sbjct: 132 KEQVSVNRCNELKCLFDESGRADDCGIRADFYYLQPCDTGDPVRNAEIIAACTEYIKQHP 191 Query: 279 ARRITFE 285 +++ + Sbjct: 192 KWQLSLQ 198 >gi|294678386|ref|YP_003579001.1| [pyruvate formate-lyase]-activating enzyme [Rhodobacter capsulatus SB 1003] gi|294477206|gb|ADE86594.1| [pyruvate formate-lyase]-activating enzyme-2 [Rhodobacter capsulatus SB 1003] Length = 262 Score = 39.1 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 40/247 (16%), Positives = 76/247 (30%), Gaps = 51/247 (20%) Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC C +C+ T R + E+++ +V S L G Sbjct: 47 GCQFRCLYCHNPDTWKLHAGRRVAVEDLVAEVAPLASFLKFAGG---------------- 90 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN--IARVGEEIGV 237 + G GEP+ V + D GL + L T G + + + I Sbjct: 91 --VTFSG-GEPMMQAAFVHATARALKDRFGL-----HVALDTQGHLHDRVTDDWFDPID- 141 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 ++ + + + L PL+ +D L RI YV++ G D+P Sbjct: 142 LVMLDIKHIDPARHLALTAQ----PLQPTLDCADRMVRLGKKMRI--RYVLVPGWTDAPE 195 Query: 298 DALNLIKILKGIPAKINL---IPFNPWPGCEY------------LCSDQKDIVTFSECIK 342 D + + + + L +PF+ ++ + + Sbjct: 196 DIARMADHVARLGPAVELVEVLPFHQLGASKWAMLGHPYALADTPTPAPEATEAARAVFR 255 Query: 343 RSGYSSP 349 G ++ Sbjct: 256 ARGLTAF 262 >gi|219850973|ref|YP_002465405.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c] gi|219545232|gb|ACL15682.1| Radical SAM domain protein [Methanosphaerula palustris E1-9c] Length = 303 Score = 39.1 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 60/152 (39%), Gaps = 24/152 (15%) Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG-FVPNIARVGEEIGV-ML 239 I + G GEPL N + ++L + + S R +ST+G +P + E+ GV + Sbjct: 99 IGIAGPGEPLAN-EETFETLRLVHE---FFPSTIR-CISTNGLLLPEKIDLLEKYGVGNV 153 Query: 240 AISLHAVSNDLRNILV----PINRKYP--------LEMLIDACRHYPGLSNARRITFEYV 287 ++L+A+ ++ + +Y LE + + + V Sbjct: 154 TVTLNALDPEVGAKIYSFINYHGNRYEGVEGAKILLENQLKGIE--LAVKKHMIVKINTV 211 Query: 288 MLKGINDSPRDALNLIKILKGIPAK-INLIPF 318 + G+ND L + + + A NLIP Sbjct: 212 YIPGVND--DQILEIARKTSAMGAYTFNLIPL 241 >gi|28379672|ref|NP_786564.1| formate acetyltransferase activating enzyme [Lactobacillus plantarum WCFS1] gi|254557826|ref|YP_003064243.1| formate acetyltransferase activating enzyme [Lactobacillus plantarum JDM1] gi|300766730|ref|ZP_07076646.1| pyruvate formate-lyase activating enzyme [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|28272512|emb|CAD65436.1| formate acetyltransferase activating enzyme [Lactobacillus plantarum WCFS1] gi|254046753|gb|ACT63546.1| formate acetyltransferase activating enzyme [Lactobacillus plantarum JDM1] gi|300495681|gb|EFK30833.1| pyruvate formate-lyase activating enzyme [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 273 Score = 39.1 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 41/252 (16%), Positives = 84/252 (33%), Gaps = 59/252 (23%) Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC + C +C+ T + +TA+EIL + + K Sbjct: 43 GCHMRCQYCHNPDTWKLNVGDQMTADEILE------------------DAAKYRAFWGKT 84 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--------FVPNIARV 231 I + G GE L D + L + + ++ S L TSG F R+ Sbjct: 85 GGITVSG-GESLVQIDFI---LDLFEKAKAMNISTC---LDTSGQPFTREQPFFDKFERL 137 Query: 232 GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291 + + L + + + + L +Y E ++D ++ + + +V++ Sbjct: 138 MKVTDISL-VDIKHIDSAKHKQLT----QYGNENILDMIQYMAQ--HHDDMWIRHVLVPQ 190 Query: 292 INDSPRDALNLIKILKGIPA----KINLIPFNPWPGCEY------------LCSDQKDIV 335 D D L + IP K+ ++P++ +Y Q + Sbjct: 191 RTDYDEDLKKLGDYIAKIPNDVVQKVEVLPYHTLGVKKYHEMKIKYRLEGIESPTQDRVA 250 Query: 336 TFSECIKRSGYS 347 + + + Y+ Sbjct: 251 NAEKLLHTADYN 262 >gi|317060665|ref|ZP_07925150.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. D12] gi|313686341|gb|EFS23176.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. D12] Length = 242 Score = 39.1 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 45/246 (18%), Positives = 83/246 (33%), Gaps = 54/246 (21%) Query: 123 GCSLTCSFCY-TGTQKLV-RN--LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 GC L C +C+ T L N TAEEIL +V R+ Sbjct: 28 GCPLRCRYCHNVDTWNLQHPNYIYTAEEILQEVNRVRAF--------------------- 66 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIG 236 ++ V + GEPL D VK+ G+ L TSG++ V EE Sbjct: 67 LTGGVTVSGGEPLLQADFVKEFFQ-LCHKNGI-----HTALDTSGYIFTEKSKEVLEETD 120 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 ++L + + + + L + +P ++ + YV++ G D Sbjct: 121 LVL-LDIKHIDPEKYYDLTSVEL-FPSLQFLEYLHKIQKDT-----WVRYVLVPGYTDDI 173 Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIK 342 D + +++++PF+ ++ +++I+ E + Sbjct: 174 EDLKKWAAYVSQYSNIKRVDILPFHQMAIYKWEKERRDYSLKDVLPPTKEEIILAEELFR 233 Query: 343 RSGYSS 348 G Sbjct: 234 SYGLPV 239 >gi|291528757|emb|CBK94343.1| pyruvate formate-lyase 1-activating enzyme [Eubacterium rectale M104/1] Length = 249 Score = 39.1 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 33/239 (13%), Positives = 74/239 (30%), Gaps = 41/239 (17%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC++ C +C+ N + E ++ + K + Sbjct: 30 GCNMRCKYCH--------NPDTWAKCGE----NDGAKLMTPQEVLKTAMRYKAYWKQTGG 77 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSM---GLSFSKRRITLSTSGFVPNIARVGEEIGVM- 238 + + GE L D V + +A + L S T+ P + E + Sbjct: 78 ITVSGGEALLQIDFVTELFKLAKEKGVNTCLDTSGNPFTV----EEPFFGKFNELMKYTD 133 Query: 239 -LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 + + + ++ L K L+M Y N +++ +V++ GI R Sbjct: 134 LFMLDIKHIDDEEHKKLTGQTNKNILDMA-----QYLS-KNGKKMWIRHVLVPGITTDER 187 Query: 298 DALNLIKILKGIPA--KINLIPFNPWP-------GCEYL-----CSDQKDIVTFSECIK 342 L + + + ++ ++P++ G Y ++ I + Sbjct: 188 YLKQLREFIDTLKTVDRVEVLPYHTLGVFKWKELGIPYQLEGVEPPTEEQIECAKRILN 246 >gi|257463063|ref|ZP_05627465.1| pyruvate formate-lyase activating enzyme [Fusobacterium sp. D12] Length = 241 Score = 39.1 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 45/246 (18%), Positives = 83/246 (33%), Gaps = 54/246 (21%) Query: 123 GCSLTCSFCY-TGTQKLV-RN--LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 GC L C +C+ T L N TAEEIL +V R+ Sbjct: 27 GCPLRCRYCHNVDTWNLQHPNYIYTAEEILQEVNRVRAF--------------------- 65 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIG 236 ++ V + GEPL D VK+ G+ L TSG++ V EE Sbjct: 66 LTGGVTVSGGEPLLQADFVKEFFQ-LCHKNGI-----HTALDTSGYIFTEKSKEVLEETD 119 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 ++L + + + + L + +P ++ + YV++ G D Sbjct: 120 LVL-LDIKHIDPEKYYDLTSVEL-FPSLQFLEYLHKIQKDT-----WVRYVLVPGYTDDI 172 Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIK 342 D + +++++PF+ ++ +++I+ E + Sbjct: 173 EDLKKWAAYVSQYSNIKRVDILPFHQMAIYKWEKERRDYSLKDVLPPTKEEIILAEELFR 232 Query: 343 RSGYSS 348 G Sbjct: 233 SYGLPV 238 >gi|255654246|ref|ZP_05399655.1| 4-hydroxyphenylacetate decarboxylase, activating subunit [Clostridium difficile QCD-23m63] gi|296452531|ref|ZP_06894228.1| pyruvate formate-lyase activating enzyme [Clostridium difficile NAP08] gi|296881057|ref|ZP_06905000.1| pyruvate formate-lyase activating enzyme [Clostridium difficile NAP07] gi|296258636|gb|EFH05534.1| pyruvate formate-lyase activating enzyme [Clostridium difficile NAP08] gi|296427923|gb|EFH13827.1| pyruvate formate-lyase activating enzyme [Clostridium difficile NAP07] Length = 316 Score = 39.1 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 62/187 (33%), Gaps = 23/187 (12%) Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236 R + G GEPL + + + ++ I S ++ E+I Sbjct: 134 RSNGGVTFSG-GEPLLQHEFL---HEVLLKCHEVNI-HTAIETSACVSSEVFNKIFEDID 188 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 H R Y ++++ + R+ ++ G NDS Sbjct: 189 FAFIDIKHM----DREKHKEQTGVYN-DLILKNISNLANSDWNGRLVLRVPVISGFNDSV 243 Query: 297 RDALNLIKIL-KGIPAKINLIPFNPWPGC-------EYLCSDQKDI-----VTFSECIKR 343 ++ ++I + K +INL+PF+ EY SD+ D+ + Sbjct: 244 KNISDIISFMHKNNLVEINLLPFHRLGESKWVQLGKEYEYSDKGDVDEGHLEELQDIFLD 303 Query: 344 SGYSSPI 350 +G + + Sbjct: 304 NGIACYV 310 >gi|301052164|ref|YP_003790375.1| formate acetyltransferase activating enzyme [Bacillus anthracis CI] gi|300374333|gb|ADK03237.1| formate acetyltransferase activating enzyme [Bacillus cereus biovar anthracis str. CI] Length = 243 Score = 39.1 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 41/243 (16%), Positives = 76/243 (31%), Gaps = 50/243 (20%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C +C+ N EI + +P + I Sbjct: 28 GCLLRCQYCH--------NADTWEI------GKGKEITVEEVMQDVTCYLPFIEASGGGI 73 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--------FVPNIARVGEE 234 + G GEPL D + + + + T+ +SG F + + E Sbjct: 74 TVSG-GEPLLQLDFL---IELFKKCKEIGI---HTTIDSSGGCYSEEPEFQNKLDILMEY 126 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 ++L H S R + N I Y N I +V++ G+ D Sbjct: 127 TDLVLLDLKHIDSKKHRKLTGKPN------EHILQFARYLSDKNK-PIWVRHVLVPGVTD 179 Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWP-------GCEY-----LCSDQKDIVTFSEC 340 + D L ++ + KI ++P++ G +Y +K++ Sbjct: 180 NEEDLQKLSSFIQSLSNVQKIEVLPYHKLGVYKWEALGHKYPLANVEPPTEKNVEQARHI 239 Query: 341 IKR 343 ++ Sbjct: 240 LQA 242 >gi|296129568|ref|YP_003636818.1| pyruvate formate-lyase activating enzyme [Cellulomonas flavigena DSM 20109] gi|296021383|gb|ADG74619.1| pyruvate formate-lyase activating enzyme [Cellulomonas flavigena DSM 20109] Length = 293 Score = 39.1 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 39/251 (15%), Positives = 86/251 (34%), Gaps = 59/251 (23%) Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC L C +C+ T + ++TA+E+L ++ R + G I G Sbjct: 78 GCPLRCLYCHNPDTMQMRRGTDVTADELLARIARYRGVFRATGGGVTISG---------- 127 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIG- 236 GEPL V++ + G + + + TSG++ + +++ Sbjct: 128 --------GEPLMQPAFVRRLVR------GAAAMDVPVAIDTSGYLGAHATDEMLDDVSL 173 Query: 237 VMLAISLHAVSNDLR---NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 V+L + LR L P +D R R+ +V++ G+ Sbjct: 174 VLLDVKSGLPETYLRVTGRELQP---------TLDFGRRLAAR--GTRMWIRFVLVPGLT 222 Query: 294 DSPRDALNLIKILKGIP---AKINLIPFNPWPGCEY------------LCSDQKDIVTFS 338 D+P + + + + ++ ++PF+ ++ + Sbjct: 223 DAPENVAAVADYVASLGEAVERVEVLPFHQMGRDKWADLGMRYELDDTEPPTPEATEVVR 282 Query: 339 ECIKRSGYSSP 349 + + G ++ Sbjct: 283 DAFRARGLTTF 293 >gi|206895928|ref|YP_002247164.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Coprothermobacter proteolyticus DSM 5265] gi|229890499|sp|B5Y8R7|MIAB_COPPD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|206738545|gb|ACI17623.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Coprothermobacter proteolyticus DSM 5265] Length = 426 Score = 39.1 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 61/161 (37%), Gaps = 22/161 (13%) Query: 111 KSRGTLCVSSQVGCSLTCSFCYTG-TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169 K + ++ VS GC C++C T+ V++ E IL +V R + + + G Sbjct: 131 KEKHSVYVSIMKGCDDFCTYCIVPFTRGRVQSRDPESILEEV---RVCVDNGAVEITLLG 187 Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIA 229 + G+ +S + + E + D V++ + +F K IT Sbjct: 188 QNVNDYGKDLSGWDFVSLVERVATIDGVRR-IRFM-SPHPANFKKDDIT----------- 234 Query: 230 RVGEEIGVMLAI--SLHAVSNDLRNILVPINRKYPLEMLID 268 R+ V L + +++ L +NRKY + Sbjct: 235 RLANLPQVAPYYHLPLQSGDDEI---LRRMNRKYTTGEFAE 272 >gi|30260669|ref|NP_843046.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. Ames] gi|47525780|ref|YP_017129.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. 'Ames Ancestor'] gi|49183510|ref|YP_026762.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. Sterne] gi|65317928|ref|ZP_00390887.1| COG1180: Pyruvate-formate lyase-activating enzyme [Bacillus anthracis str. A2012] gi|165870717|ref|ZP_02215370.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. A0488] gi|167634817|ref|ZP_02393136.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. A0442] gi|167640786|ref|ZP_02399045.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. A0193] gi|170688631|ref|ZP_02879837.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. A0465] gi|170707180|ref|ZP_02897636.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. A0389] gi|177655125|ref|ZP_02936755.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. A0174] gi|190568214|ref|ZP_03021123.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis Tsiankovskii-I] gi|196034574|ref|ZP_03101982.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus W] gi|218901649|ref|YP_002449483.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus AH820] gi|227816618|ref|YP_002816627.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. CDC 684] gi|228913196|ref|ZP_04076835.1| hypothetical protein bthur0012_4400 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228925699|ref|ZP_04088786.1| hypothetical protein bthur0010_4250 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931938|ref|ZP_04094832.1| hypothetical protein bthur0009_4230 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228944262|ref|ZP_04106638.1| hypothetical protein bthur0007_4370 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229120107|ref|ZP_04249359.1| hypothetical protein bcere0016_4240 [Bacillus cereus 95/8201] gi|229601335|ref|YP_002865113.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. A0248] gi|254686898|ref|ZP_05150756.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. CNEVA-9066] gi|254725978|ref|ZP_05187760.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. A1055] gi|254738875|ref|ZP_05196577.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. Western North America USA6153] gi|254743741|ref|ZP_05201426.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. Kruger B] gi|254756280|ref|ZP_05208309.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. Vollum] gi|254762099|ref|ZP_05213948.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. Australia 94] gi|30254037|gb|AAP24532.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. Ames] gi|47500928|gb|AAT29604.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. 'Ames Ancestor'] gi|49177437|gb|AAT52813.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. Sterne] gi|164713551|gb|EDR19075.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. A0488] gi|167511180|gb|EDR86567.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. A0193] gi|167529891|gb|EDR92639.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. A0442] gi|170127958|gb|EDS96829.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. A0389] gi|170667491|gb|EDT18248.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. A0465] gi|172080274|gb|EDT65364.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. A0174] gi|190560706|gb|EDV14682.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis Tsiankovskii-I] gi|195992617|gb|EDX56577.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus W] gi|218536292|gb|ACK88690.1| pyruvate formate-lyase-activating enzyme [Bacillus cereus AH820] gi|227003394|gb|ACP13137.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. CDC 684] gi|228663345|gb|EEL18933.1| hypothetical protein bcere0016_4240 [Bacillus cereus 95/8201] gi|228815413|gb|EEM61658.1| hypothetical protein bthur0007_4370 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228827723|gb|EEM73463.1| hypothetical protein bthur0009_4230 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228833974|gb|EEM79524.1| hypothetical protein bthur0010_4250 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228846601|gb|EEM91614.1| hypothetical protein bthur0012_4400 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229265743|gb|ACQ47380.1| pyruvate formate-lyase-activating enzyme [Bacillus anthracis str. A0248] Length = 243 Score = 39.1 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 41/243 (16%), Positives = 76/243 (31%), Gaps = 50/243 (20%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C +C+ N EI + +P + I Sbjct: 28 GCLLRCQYCH--------NADTWEI------GKGKEITVEEVMQDVTCYLPFIEASGGGI 73 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--------FVPNIARVGEE 234 + G GEPL D + + + + T+ +SG F + + E Sbjct: 74 TVSG-GEPLLQLDFL---IELFKKCKEIGI---HTTIDSSGGCYSEETEFQNKLDILMEY 126 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 ++L H S R + N I Y N I +V++ G+ D Sbjct: 127 TDLVLLDLKHIDSKKHRKLTGKPN------EHILQFARYLSDKNK-PIWVRHVLVPGVTD 179 Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWP-------GCEY-----LCSDQKDIVTFSEC 340 + D L ++ + KI ++P++ G +Y +K++ Sbjct: 180 NEEDLQKLSSFIQSLSNVQKIEVLPYHKLGVYKWEALGHKYPLANVEPPTEKNVEQARHI 239 Query: 341 IKR 343 ++ Sbjct: 240 LQA 242 >gi|288957714|ref|YP_003448055.1| radical SAM domain protein [Azospirillum sp. B510] gi|288910022|dbj|BAI71511.1| radical SAM domain protein [Azospirillum sp. B510] Length = 480 Score = 39.1 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 64/197 (32%), Gaps = 30/197 (15%) Query: 109 PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIE 168 P +L VS C+L C +CY G + A + +E Sbjct: 98 PPLHALSLAVSQA--CNLGCGYCYAGQGSFGK-------------APRRMPLDTALAAVE 142 Query: 169 GMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR-------ITLST 221 +V + + MG GEPL N V ++ + + + RR IT + Sbjct: 143 RLVNGAPEGGRVTLAFMG-GEPLVN-RPVIQAATR----HAFALAARRGVRVNGSITTNG 196 Query: 222 SGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINR-KYPLEMLIDACRHYPGLSNAR 280 + P EE G + ISL ++ + L P + + ++ Sbjct: 197 TLVTPEDGDFFEEFGFAVTISLDGPADQH-DRLRPFKDGRGSFDRIMANVAPLLKRQRRM 255 Query: 281 RITFEYVMLKGINDSPR 297 +++ + D P Sbjct: 256 QVSARVTVTPDNLDLPD 272 >gi|78187392|ref|YP_375435.1| nitrogenase cofactor biosynthesis protein NifB [Chlorobium luteolum DSM 273] gi|78167294|gb|ABB24392.1| Nitrogenase cofactor biosynthesis protein NifB [Chlorobium luteolum DSM 273] Length = 420 Score = 39.1 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 61/162 (37%), Gaps = 19/162 (11%) Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIG 236 IS + + G G+P N + ++L + F + + ++T+G +P I + E Sbjct: 75 ISVVGIAGPGDPFANSEETMETLRLVRKE----FPEMLLCVATNGLNLMPFIPELKELEV 130 Query: 237 VMLAISLHAVSNDLRNILVPINRKYP-LEMLIDACR---------HYPGLSNARRITFEY 286 + I+++A+ + + R + I+A + Sbjct: 131 SHVTITINAIDPAIGAEIYAWVRHEKRMHRDIEAAELLIGNQLAALSALKAAGITAKVNT 190 Query: 287 VMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEYL 327 +++ G+ND L + + + + A I N +P+ + Sbjct: 191 IIIPGVNDR--HVLAVAEKVSELGADILNCLPYYNTKETVFE 230 >gi|308181906|ref|YP_003926034.1| formate acetyltransferase activating enzyme [Lactobacillus plantarum subsp. plantarum ST-III] gi|308047397|gb|ADN99940.1| formate acetyltransferase activating enzyme [Lactobacillus plantarum subsp. plantarum ST-III] Length = 273 Score = 39.1 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 41/252 (16%), Positives = 84/252 (33%), Gaps = 59/252 (23%) Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC + C +C+ T + +TA+EIL + + K Sbjct: 43 GCHMRCQYCHNPDTWKLNVGDQMTADEILE------------------DAAKYRAFWGKT 84 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--------FVPNIARV 231 I + G GE L D + L + + ++ S L TSG F R+ Sbjct: 85 GGITVSG-GESLVQIDFI---LDLFEKAKAMNISTC---LDTSGQPFTREQPFFDKFERL 137 Query: 232 GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291 + + L + + + + L +Y E ++D ++ + + +V++ Sbjct: 138 MKVTDISL-VDIKHIDSAKHKQLT----QYGNENILDMIQYMAQ--HHDDMWIRHVLVPQ 190 Query: 292 INDSPRDALNLIKILKGIPA----KINLIPFNPWPGCEY------------LCSDQKDIV 335 D D L + IP K+ ++P++ +Y Q + Sbjct: 191 RTDYDEDLKKLGDYIAKIPNDVVQKVEVLPYHTLGVKKYHEMKIKYRLEGIESPTQDRVA 250 Query: 336 TFSECIKRSGYS 347 + + + Y+ Sbjct: 251 NAEKLLHTADYN 262 >gi|256811036|ref|YP_003128405.1| Radical SAM domain protein [Methanocaldococcus fervens AG86] gi|256794236|gb|ACV24905.1| Radical SAM domain protein [Methanocaldococcus fervens AG86] Length = 315 Score = 39.1 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 73/216 (33%), Gaps = 31/216 (14%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 CS C +C N T E R+ + ++ + KI + Sbjct: 27 CSYDCLYCQV---GRTLNKTTE--------RRNFYNPENIFKSVKEKIDKLSNEKIDYLT 75 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML-AIS 242 + GEP + N+ K + + + + IT S+ + ++ + + L + Sbjct: 76 FVADGEPTLDI-NLSKEVEMLRN---FNIPIAIITNSSLIWKEDVK--NDLLNFDLVSFK 129 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 + + L + ++ L+ +++ + + IT E ++L +N + + Sbjct: 130 VDSTDEKLWMEINRPHKDLVLDKILEGIMDFRDSYKGKLIT-ETMILGNVNYTEEAIVKT 188 Query: 303 IKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIV 335 + LK + +N S +K + Sbjct: 189 AEFLKDLKPNKCYLN---------TPIRPSSEKHVK 215 >gi|328952064|ref|YP_004369398.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109] gi|328452388|gb|AEB08217.1| Radical SAM domain protein [Desulfobacca acetoxidans DSM 11109] Length = 429 Score = 39.1 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 35/229 (15%), Positives = 80/229 (34%), Gaps = 43/229 (18%) Query: 112 SRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMV 171 R + + C+ C C + R+ + + P E+I + Sbjct: 182 ERWEAPLPTSPSCNARCLGCLSQQ---KRSPFPAPM--------KRIRFMPRPEEIAEVA 230 Query: 172 IPSVGRKISNIVMMGMG---EPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNI 228 +P + + + + G G EPL +++++ + + + L+T+G Sbjct: 231 VPHLEQAENAVASFGQGCEGEPLLQGSTLQEAIRLIRRQVARGV----LNLNTNGSRSE- 285 Query: 229 ARVGEEIGVMLAISLHAVSNDLRNIL----------VPINRKYPLEMLIDACRHYPGLSN 278 +A + A + LR L + Y ++ A + + Sbjct: 286 ---------TVAHLVAAGLDSLRVSLNSARPTYYSAYYRPQDYHFTEVVAALK--AAKAG 334 Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF-NPWPGCEY 326 R++ Y++ G++D P + L +++ +I+LI N +Y Sbjct: 335 GARVSLNYLIFPGVSDDPAEVSALEELIAQT--RIDLIQLRNLNIDPDY 381 >gi|227500654|ref|ZP_03930703.1| possible [formate-C-acetyltransferase]-activating enzyme [Anaerococcus tetradius ATCC 35098] gi|227217241|gb|EEI82585.1| possible [formate-C-acetyltransferase]-activating enzyme [Anaerococcus tetradius ATCC 35098] Length = 320 Score = 39.1 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 38/230 (16%), Positives = 76/230 (33%), Gaps = 38/230 (16%) Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167 I G V + C + C C A EI+ + L+ +D Sbjct: 79 IHYMENGIHKVHRDITC-IGCRRCEKNCL-----QKAIEIVGEDKTITELMDVVKEDKDF 132 Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227 M + E L ++ ++ S G++ + T G+ P Sbjct: 133 YMMSGGGLTVGGGEC--TAQAESL---KSLLEA----SHMDGIN-----TAIETCGYTP- 177 Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKY----PLEMLIDACRHYPGLSNARRIT 283 + + I + + L + + P+ KY E ++ R+ R+ Sbjct: 178 -RKSLDLIKDHVDLFLFDI-----KQMDPVKHKYWTGVNNERILSNLRYLLENGKKVRVR 231 Query: 284 FEYVMLKGINDSPRDALNLIKILKGIPAKIN-----LIPFNPWPGCEYLC 328 +LKG+NDS + ++ L+ N L+P++ + +Y+ Sbjct: 232 MP--ILKGVNDSHEEIKAVVDFLEDFKCFKNFDGIDLLPYHRYGVGKYVQ 279 >gi|15615505|ref|NP_243809.1| hypothetical protein BH2943 [Bacillus halodurans C-125] gi|10175565|dbj|BAB06662.1| BH2943 [Bacillus halodurans C-125] Length = 393 Score = 39.1 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 52/279 (18%), Positives = 98/279 (35%), Gaps = 42/279 (15%) Query: 45 RGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKIS-------CDGTRKWLL----RFP 93 + I + + I +E R L Q + D +S D RK ++ Sbjct: 5 KYIMNVDKIEQIPKEEREKLKQITDKFVFRVNDYYLSLIDWNDPNDPIRKLVIPNEGELS 64 Query: 94 ARCIGGPVEIETVYI----PEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149 + +T Y+ K T + C C +C+ ++L RN Sbjct: 65 EYGRWDASDEDTNYVVPGCQHKYETTALLICSEVCGAYCRYCF--RKRLFRN-------- 114 Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL-CNFDNVKKSLSIASDSM 208 + + D D +I+N+++ G G+PL ++ + Sbjct: 115 ---DVKEAMSDVDPGLDYIAQTP-----QINNVLLTG-GDPLILATKKLRYIIERLRAID 165 Query: 209 GLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268 + I + + V N R+ E+ +L + + D R ++ +P+E+ + Sbjct: 166 HVKI----IRIGSKLPVFNPMRITEDEQ-LLELIREYSTPDHRIYIMAH-INHPVEITNE 219 Query: 269 ACRHYPGLSNARRITFEYV-MLKGINDSPRDALNLIKIL 306 A + + L +A I +LKGIND P L+ L Sbjct: 220 ARQAFQALHDAGAIVVNQTPVLKGINDDPDVLAELLDKL 258 >gi|116749884|ref|YP_846571.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116698948|gb|ABK18136.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB] Length = 470 Score = 39.1 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 72/233 (30%), Gaps = 40/233 (17%) Query: 124 CSLTCSFCYTGTQKLVRN---LTAEEILLQVLLARSL-LGDFPGCEDIEGMVIPSVGRKI 179 C+ CS+CY + L RN +T EE+ + +S G P + Sbjct: 94 CNFNCSYCYLPEE-LRRNGKTMTPEEVCSALERLKSWFCGIMPAGARPQ----------- 141 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 ++ G EPL + + + D + L ++ GV + Sbjct: 142 --LIFHGS-EPLMAKEAIFAGMERFRDDFTFGIQSNGMLLDDEAIA-----FLKDHGVGI 193 Query: 240 AISLHAVSNDL----RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 +SL A + D+ R + +I+ YP + +T ++ Sbjct: 194 GVSLDAPTADVANLTRRNWSGTGGFERVSEVIEKLASYPAFNVITTVT-----RGNVHTL 248 Query: 296 PRDALNLIKILKGIP---AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSG 345 P ++ N + G + SD+ F + R+ Sbjct: 249 P----AMVDFYHQRGIATVMFNPVRCTQQGGRDLKPSDRVLAERFCRALDRAH 297 >gi|331269793|ref|YP_004396285.1| pyruvate formate-lyase-activating enzyme [Clostridium botulinum BKT015925] gi|329126343|gb|AEB76288.1| pyruvate formate-lyase-activating enzyme [Clostridium botulinum BKT015925] Length = 308 Score = 39.1 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 32/94 (34%), Gaps = 13/94 (13%) Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIP-AKINLIPFNPWPGCEYLC 328 ++ +S + I ++ G ND + + K +KIN++P++ +Y Sbjct: 215 LKNISLVSKYKPILVRIPIIPGFNDDNENIICTANFCKSNNISKINILPYHKLGESKYRQ 274 Query: 329 ------------SDQKDIVTFSECIKRSGYSSPI 350 + + I+ G + I Sbjct: 275 LNIDYNLNNVLTPNADKMNHVKNLIENVGVTCII 308 >gi|210621731|ref|ZP_03292780.1| hypothetical protein CLOHIR_00725 [Clostridium hiranonis DSM 13275] gi|210154613|gb|EEA85619.1| hypothetical protein CLOHIR_00725 [Clostridium hiranonis DSM 13275] Length = 303 Score = 39.1 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 23/174 (13%), Positives = 62/174 (35%), Gaps = 34/174 (19%) Query: 206 DSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS--LHAVSNDLRNILVPINRKYPL 263 G++ S + + F+ +AR G+ +AI +A + ++P ++ Sbjct: 124 SGGGVTLSGGEVMVQDIDFICELARGCRNKGIDVAIDTCGYAPTEHY-EKILPYANRFLF 182 Query: 264 EMLIDACRHYPGLSNARR----------------ITFEYVMLKGIN--DSPRDALNLIKI 305 ++ + + + I ++ G+N D+ + + +I++ Sbjct: 183 DIKLVDEDKHKKFTGKSNDLILKNLKFLNDNGAYINIRIPLIGGVNVDDNNEEVMKMIEL 242 Query: 306 LKGIPAK-INLIPFNPW------------PGCEYLCSDQKDIVTFSECIKRSGY 346 LK + K +NL+P++ G E+ + + + + + Sbjct: 243 LKPLNIKAVNLLPYHDIGKHKYTKLDKEYEGNEFTKPSDEKMNEIKMIFENNNF 296 >gi|126665833|ref|ZP_01736814.1| molybdenum cofactor biosynthesis protein A [Marinobacter sp. ELB17] gi|126629767|gb|EBA00384.1| molybdenum cofactor biosynthesis protein A [Marinobacter sp. ELB17] Length = 330 Score = 39.1 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 63/194 (32%), Gaps = 30/194 (15%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C C +C + QVL + ++ I G Sbjct: 25 CDFRCVYCMAEDMTFLPR-------QQVLTLEEIARLAHNFVELGTEKIRLTG------- 70 Query: 184 MMGMGEPLCNFDNVKKSL-SIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 GEPL V++ + + ++ G +T + S + + L IS Sbjct: 71 ----GEPL-----VRRGIVDLVTEIGGYGLRDFAMTTNGSQLSSMAEPLRKAGLHRLNIS 121 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 L ++ + + + + IDA R + R I V++KG ND +D L Sbjct: 122 LDSLDAEKFRSITRTGKLSQVLEGIDAARE----AGFRGIKLNTVVMKGRND--QDVPEL 175 Query: 303 IKILKGIPAKINLI 316 ++ + I I Sbjct: 176 VEYARRKQVDITFI 189 >gi|78044893|ref|YP_361076.1| radical SAM domain-containing protein [Carboxydothermus hydrogenoformans Z-2901] gi|77997008|gb|ABB15907.1| radical SAM domain protein [Carboxydothermus hydrogenoformans Z-2901] Length = 330 Score = 39.1 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 34/219 (15%), Positives = 73/219 (33%), Gaps = 41/219 (18%) Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166 T+ GC+ C FC N +I G+ ED Sbjct: 65 LYHFYPGSTILSVGTFGCNFRCGFCQ--------NYEISQIAE--------TGEKLLPED 108 Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226 + + +++ + EP+ ++ ++ + +G + L T+GF+ Sbjct: 109 LVKLAQRYKSQEMIGVAYTYS-EPVVWYEY-IEASAPLIKELGF-----KTVLVTNGFIN 161 Query: 227 NIARVGEEIGV--MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF 284 + + + L I L ++ + + + P+ I+ + + + Sbjct: 162 K-EPLKKILPFIDALNIDLKGITEEYYRDICQGSVT-PVLEAIETSKAF-----GAHVEV 214 Query: 285 EYVMLKGINDSPRDALNLIKILKGIPAKINL---IPFNP 320 +++ G+ND+P L K L NL IP + Sbjct: 215 TTLLVPGLNDAPEQIEELAKFLA------NLDRDIPLHF 247 >gi|317497051|ref|ZP_07955379.1| radical SAM superfamily protein [Lachnospiraceae bacterium 5_1_63FAA] gi|291558902|emb|CBL37702.1| Fe-S oxidoreductases [butyrate-producing bacterium SSC/2] gi|316895711|gb|EFV17865.1| radical SAM superfamily protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 308 Score = 39.1 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 68/191 (35%), Gaps = 26/191 (13%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+ +C +C G + N + E K + Sbjct: 30 CNYSCIYCQLGRTDKMTN-------------KRQEFYKTEDIIAEFKQYLKDSDKFDIVT 76 Query: 184 MMGMGEP--LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV--ML 239 ++G GEP N + +L +D + + + T+G + + +V EE+ M+ Sbjct: 77 VVGEGEPTLAANLGELVVALKALTD--------KPVAVITNGALLSDPQVREELCHADMV 128 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 SL A + ++ + E + + + + + E +++ GIND + Sbjct: 129 LPSLDAYNQEISKKIDRPYGTIKFEEEFEGLKKFTHMYEGE-LWLEIMLVDGINDDEQSI 187 Query: 300 LNLIKILKGIP 310 L ++LK + Sbjct: 188 LKFQELLKELK 198 >gi|282849924|ref|ZP_06259307.1| radical SAM domain protein [Veillonella parvula ATCC 17745] gi|282580361|gb|EFB85761.1| radical SAM domain protein [Veillonella parvula ATCC 17745] Length = 575 Score = 39.1 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 44/266 (16%), Positives = 74/266 (27%), Gaps = 47/266 (17%) Query: 60 VRHLLNQHFSIIYPEIVDEKISCDG-------------TRKWLLRFPARCIGGPVEIETV 106 +R L + P + S DG T K R G + Sbjct: 186 LRQ-LADISGVYVPSLYVPIYSEDGEFKGYDIAEGVPKTIK---RHFEMLTSGGETVVAT 241 Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166 + + GC C FC G V + +IL + + LG G Sbjct: 242 NY-TEFGAMYIIEVARGCGRHCRFCMAGYCFRVPRVRPLDILKEGVERAEKLGKKVGLMG 300 Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226 P V L N+ I S M S + R T V Sbjct: 301 AAISDYPEVDE-------------LVNY--------IRSKDMRYSCASLRADSLTQAVVD 339 Query: 227 NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286 + + + I+ S LR ++ N+ E + S + + Y Sbjct: 340 G---LADSGQKTITIAPETGSERLRRVI---NKGIS-EEHLQNAATLSAKSGIQHMRL-Y 391 Query: 287 VMLKGINDSPRDALNLIKILKGIPAK 312 +M+ ++ D ++ + + A Sbjct: 392 IMIGLPTETDEDIEAIVGLAERTQAH 417 >gi|254410457|ref|ZP_05024236.1| nitrogenase cofactor biosynthesis protein NifB [Microcoleus chthonoplastes PCC 7420] gi|196182663|gb|EDX77648.1| nitrogenase cofactor biosynthesis protein NifB [Microcoleus chthonoplastes PCC 7420] Length = 427 Score = 39.1 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 57/161 (35%), Gaps = 23/161 (14%) Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221 P + + +IS + G G+P N + ++ + + F + L+T Sbjct: 60 PAQAAVYMEKVLEKEPRISVAGIAGPGDPFANPEETLGTMRLLREK----FPDLILCLAT 115 Query: 222 SGF---VPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYP------------LEML 266 +G I + E + ++++A+ ++ + R LE Sbjct: 116 NGLNLKPEYIDEIAEIGVSHVTVTINAIDPEITRKVYRWVRHEKSVYQGLKGAKLLLERQ 175 Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDS--PRDALNLIKI 305 ++A + + + +++ GIND A + ++ Sbjct: 176 LEAVKGL--KAAGITVKINCIVMPGINDHHVVEVAKAMAEL 214 >gi|241204967|ref|YP_002976063.1| molybdenum cofactor biosynthesis protein A [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858857|gb|ACS56524.1| molybdenum cofactor biosynthesis protein A [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 348 Score = 39.1 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 69/192 (35%), Gaps = 38/192 (19%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C C++C + D E+++ + + R +S I Sbjct: 40 CDFRCTYCMAENMTFLP-----------------KKDLLTLEELDRLCSAFIARGVSKIR 82 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSK--RRITLSTSGFVPNIARVGEEI---GV- 237 + G GEPL V+K++ +G +TL+T+G ++R EE+ GV Sbjct: 83 LTG-GEPL-----VRKNIMYLVRQLGQKIGAGLDELTLTTNG--SQLSRHAEELYDCGVR 134 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 + +SL + D + + IDA + +I V LK ND+ Sbjct: 135 RINVSLDTLDPDKFRKITRWGDIAKVMEGIDAAQ-----KAGLKIKLNAVALKDFNDAE- 188 Query: 298 DALNLIKILKGI 309 L++ G Sbjct: 189 -MPELLRFAHGR 199 >gi|222081659|ref|YP_002541024.1| Radical SAM protein [Agrobacterium radiobacter K84] gi|221726338|gb|ACM29427.1| Radical SAM protein [Agrobacterium radiobacter K84] Length = 357 Score = 39.1 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 55/143 (38%), Gaps = 16/143 (11%) Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 R+ + L + L V+ ++R ++P + +E + + + + +++ Y+ Sbjct: 207 FQRMKDAGVDALGMHLEVVTPEIRARIMPGKAQVGIEKYMRSFKAAVEVFGRGQVS-TYI 265 Query: 288 MLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVT----FSEC 340 + G+ D+ L + + L I ++PF P G + + + S Sbjct: 266 L-AGLGDTREAILEICEELIAIGVYPFVVPFVPISGTPLESHPAPKPEFMHSILGPLSRM 324 Query: 341 IKRSGYSSPIRTPRGLDILAACG 363 + SG + DI A CG Sbjct: 325 LVASGLKAV-------DIKAGCG 340 >gi|167767743|ref|ZP_02439796.1| hypothetical protein CLOSS21_02278 [Clostridium sp. SS2/1] gi|167710482|gb|EDS21061.1| hypothetical protein CLOSS21_02278 [Clostridium sp. SS2/1] Length = 325 Score = 39.1 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 68/191 (35%), Gaps = 26/191 (13%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+ +C +C G + N + E K + Sbjct: 47 CNYSCIYCQLGRTDKMTN-------------KRQEFYKTEDIIAEFKQYLKDSDKFDIVT 93 Query: 184 MMGMGEP--LCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV--ML 239 ++G GEP N + +L +D + + + T+G + + +V EE+ M+ Sbjct: 94 VVGEGEPTLAANLGELVVALKALTD--------KPVAVITNGALLSDPQVREELCHADMV 145 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 SL A + ++ + E + + + + + E +++ GIND + Sbjct: 146 LPSLDAYNQEISKKIDRPYGTIKFEEEFEGLKKFTHMYEGE-LWLEIMLVDGINDDEQSI 204 Query: 300 LNLIKILKGIP 310 L ++LK + Sbjct: 205 LKFQELLKELK 215 >gi|297526565|ref|YP_003668589.1| Radical SAM domain protein [Staphylothermus hellenicus DSM 12710] gi|297255481|gb|ADI31690.1| Radical SAM domain protein [Staphylothermus hellenicus DSM 12710] Length = 327 Score = 39.1 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 55/272 (20%), Positives = 92/272 (33%), Gaps = 58/272 (21%) Query: 105 TVYIPEKSRGTLCVSSQVG---------CSLTCSFCYTGTQKLVRNLTAEEILLQVLLAR 155 TVY P SR C +G C C +C G + + Sbjct: 5 TVYGPHPSR---CFDWSLGVDVLLPPKRCPYNCVYCPLGRTSIK-------------TMK 48 Query: 156 SLLGDFPGCEDIEGMVIPSVGRKI-SNIVMMGMGEPLCNFDN--VKKSLSIASDSMGLSF 212 + PG E V I SNI++ G G+PL N+ + +++ + G Sbjct: 49 PAMLIDPGTVKKELEEFIQVNGCIFSNILVWGHGDPLLNYHTPLIVRTIRETINQYGCRS 108 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN---DLRNILVPINRKYPLEMLIDA 269 S I + T+GF + ++ I + + + R ++ + +LI+ Sbjct: 109 S---IRIRTTGFALGEKWALPLLDIVDEIII--PFDAAGETRQVINDPMDNAKISLLIET 163 Query: 270 CRHYPGLSNARRITFEYVMLK--GI-NDSPRDALNLIKILKGIPA-KINLIPFNPWPGCE 325 R+ P + R+I FE +LK GI N L + KI L N Sbjct: 164 LRNIP-KTYRRKIAFETNLLKIDGIKNSDLPILDELTSYISSTGIMKIYLKTVN------ 216 Query: 326 YLCSDQKDIVT------F---SECIKRSGYSS 348 K ++ F + + GY+ Sbjct: 217 --RPSWKQMIKPVKGRLFTRVKDYLVDKGYTV 246 >gi|269798490|ref|YP_003312390.1| radical SAM protein [Veillonella parvula DSM 2008] gi|269095119|gb|ACZ25110.1| Radical SAM domain protein [Veillonella parvula DSM 2008] Length = 575 Score = 39.1 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 44/266 (16%), Positives = 74/266 (27%), Gaps = 47/266 (17%) Query: 60 VRHLLNQHFSIIYPEIVDEKISCDG-------------TRKWLLRFPARCIGGPVEIETV 106 +R L + P + S DG T K R G + Sbjct: 186 LRQ-LADVSGVYVPSLYVPIYSEDGEFKGYDIVEGVPKTIK---RHFEMLTSGGETVVAT 241 Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166 + + GC C FC G V + +IL + + LG G Sbjct: 242 NY-TEFGAMYIIEVARGCGRHCRFCMAGYCFRVPRVRPLDILKEGVERAEKLGKKVGLMG 300 Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP 226 P V L N+ I S M S + R T V Sbjct: 301 AAISDYPEVDE-------------LVNY--------IRSKDMRYSCASLRADSLTQAVVD 339 Query: 227 NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286 + + + I+ S LR ++ N+ E + S + + Y Sbjct: 340 G---LADSGQKTITIAPETGSERLRRVI---NKGIS-EEHLQNAATLSAKSGIQHMRL-Y 391 Query: 287 VMLKGINDSPRDALNLIKILKGIPAK 312 +M+ ++ D ++ + + A Sbjct: 392 IMIGLPTETDEDIEAIVGLAERTQAH 417 >gi|52549073|gb|AAU82922.1| Fe-S oxidoreductase [uncultured archaeon GZfos23H9] Length = 329 Score = 39.1 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 82/230 (35%), Gaps = 26/230 (11%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+ +C +C G + Q + +I+ + + S R+I + Sbjct: 30 CNYSCVYCQLGR--------TTHMTNQ---RKDFFPPEELLNEIKRVEVESSHREIDFVT 78 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVMLAI- 241 +G GEP + KSL + I + T+G + V ++ + + Sbjct: 79 FVGEGEP-----TLCKSLGWLIRKT-KEIADIPIAVDTNGSLLYREDVRNDLSQADIVMP 132 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 SL A + + + R E +++ + N I E +++KG+NDS + Sbjct: 133 SLDAGTAETFRKINRPYRGLDFETVVEGLERFRRDYNGE-IWVEVMLVKGLNDSAGELEA 191 Query: 302 LIKILKGI---PAKINLIPFNPWPGCEY-LCSDQKDIVTFSECIKRSGYS 347 L L I IN+ P P + + D++ I + + Sbjct: 192 LKSRLGKIEPNRTYINV-PI-RPPAEPWAVPPDKEAITLAHAILNDANVV 239 >gi|150018969|ref|YP_001311223.1| radical SAM domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149905434|gb|ABR36267.1| Radical SAM domain protein [Clostridium beijerinckii NCIMB 8052] Length = 453 Score = 39.1 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 76/196 (38%), Gaps = 23/196 (11%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 +C++ GC+L C +C+ + + V+ A + I+ ++ S Sbjct: 96 AICLNVIHGCNLRCKYCFADEGEYHGH-------GGVMSA------DTAKKAIDYVIKRS 142 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVG 232 RK I + G GEP D +K+ + A D+ + R T++T+ P++ Sbjct: 143 GPRKNIEIDLFG-GEPTLIMDTIKEIIKYARDNEEKWGKRVRFTMTTNATLLTPDMMDYM 201 Query: 233 EEIGVMLAISL---HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF-EYVM 288 ++ + +SL V++++R + ++ + ++ + + + Sbjct: 202 DKEMGNIILSLDGRKEVNDNVR---IKPDKSGSFDDIVPNIKEMIKRRTKGKTYYVRGTF 258 Query: 289 LKGINDSPRDALNLIK 304 + D D + ++ Sbjct: 259 TRENTDFYEDVMAMVN 274 >gi|299133809|ref|ZP_07027003.1| lysine 2,3-aminomutase YodO family protein [Afipia sp. 1NLS2] gi|298591645|gb|EFI51846.1| lysine 2,3-aminomutase YodO family protein [Afipia sp. 1NLS2] Length = 357 Score = 39.1 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 39/246 (15%), Positives = 83/246 (33%), Gaps = 35/246 (14%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162 +E + R + + C++ C FC R E++ Sbjct: 89 VEGIVHRYPDR--VLLKLVHVCAVYCRFC------FRR-----EMVG-----PGKDSALS 130 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 + + +I +++ G G+PL + ++ I +D + K I T Sbjct: 131 DHAYAKAIDYIRTHPEIWEVILTG-GDPL--MLSTRRLKEIVNDLAAIPHVKI-IRFHTR 186 Query: 223 GFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI 282 V + AR+ +E +A +LH L + + AC + Sbjct: 187 VPVADPARMTDE----VAEALHHPDVTTWVALHANHPRELTAEARAACARLIDR--GIPM 240 Query: 283 TFEYVMLKGINDSPRDALNLIKILKGI-PAKINLIPFNP---WPGCEYLCSDQKDIVTFS 338 + V+L+G+ND+ A L +++ +I + PG +L + ++ Sbjct: 241 VSQSVLLRGVNDT---AETLTALMRAFVECRIKPYYLHHGDLAPGTSHLRTTLEEGEALM 297 Query: 339 ECIKRS 344 ++ Sbjct: 298 RQLRGH 303 >gi|254374142|ref|ZP_04989624.1| conserved hypothetical protein [Francisella novicida GA99-3548] gi|151571862|gb|EDN37516.1| conserved hypothetical protein [Francisella novicida GA99-3548] Length = 328 Score = 39.1 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 72/217 (33%), Gaps = 48/217 (22%) Query: 110 EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169 K G + + +Q C++ C +C+ N+ PG +D Sbjct: 97 HKYHGRVLLIAQTSCAVHCRYCFRKEFDYKENI-------------------PGRKDWLQ 137 Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKS----LSIASDSMGLSF-SKRRITLSTSGF 224 + V++ G+PL N D + + + L S+ + L Sbjct: 138 AFEYIANDQSIEEVILSGGDPLLNNDEILEFFIENIQQIPHIKRLRIHSRIPVVLPERMT 197 Query: 225 VPNIARVGEE-IGVMLAISLHAVS--NDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281 + + E + +L I ++ + + + ++ KY + +L + Sbjct: 198 TKLLKILSEHRLDTVLVIHVNHPNELDGNVSKILKEIHKYGIIILNQS------------ 245 Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318 +LK IND L L I AK+ IP+ Sbjct: 246 -----TLLKDINDDANVLYALSTKL--INAKV--IPY 273 >gi|115373053|ref|ZP_01460356.1| radical SAM [Stigmatella aurantiaca DW4/3-1] gi|310821841|ref|YP_003954199.1| hypothetical protein STAUR_4592 [Stigmatella aurantiaca DW4/3-1] gi|115369965|gb|EAU68897.1| radical SAM [Stigmatella aurantiaca DW4/3-1] gi|309394913|gb|ADO72372.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1] Length = 435 Score = 39.1 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 17/125 (13%), Positives = 45/125 (36%), Gaps = 8/125 (6%) Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST-SGFVPNIARVGEEIGVMLAISLHAV 246 GEPL + + +++ + K I ++T + +A + + + +SL++ Sbjct: 253 GEPLTRYKAIAEAIRYMRERTD----KGSININTNASLTHGLATLFDAGLDAIRVSLNSA 308 Query: 247 SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKIL 306 DL + Y E + + ++ ++ G+ D + L +++ Sbjct: 309 VKDLYEAYYKPVK-YTWEDVEASIA--LARERGAYLSLNLLLFPGVTDREGEVRALERLV 365 Query: 307 KGIPA 311 Sbjct: 366 SQYQV 370 >gi|260426240|ref|ZP_05780219.1| radical SAM domain protein [Citreicella sp. SE45] gi|260420732|gb|EEX13983.1| radical SAM domain protein [Citreicella sp. SE45] Length = 367 Score = 38.7 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 54/142 (38%), Gaps = 18/142 (12%) Query: 230 RVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 R+ + L + L AV+ ++R ++P PLE + + +++ Y++ Sbjct: 218 RMLDAGIDTLGMHLEAVTPEVRQRIMPGKASVPLEKYFSSFEAAVKVFGRGQVS-TYIL- 275 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFS--------ECI 341 G+ D+ L + + L + ++PF P G S F + I Sbjct: 276 AGLGDTREAILAMSERLCAMGVYPFVVPFVPISGTPLE-SHPAPSAAFMAGILRPLGQMI 334 Query: 342 KRSGYSSPIRTPRGLDILAACG 363 R+G S D+ A CG Sbjct: 335 ARAGILS-------SDMKAGCG 349 >gi|254369527|ref|ZP_04985538.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica FSC022] gi|157122481|gb|EDO66616.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica FSC022] Length = 328 Score = 38.7 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 83/262 (31%), Gaps = 56/262 (21%) Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 LL Q E++D+ S D ++ + R + + +Q Sbjct: 62 LLKQVLPTADEEVIDQAYSSD----------PLDEKNYNKVPGLLHKYHGR--VLLIAQT 109 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 C++ C +C+ N+ PG +D + Sbjct: 110 SCAVHCRYCFRKEFDYKENI-------------------PGRKDWLQAFEYIANDQSIEE 150 Query: 183 VMMGMGEPLCNFDNVKKS----LSIASDSMGLSF-SKRRITLSTSGFVPNIARVGEE-IG 236 V++ G+PL N D + + + S L S+ + L + + E + Sbjct: 151 VILSGGDPLLNNDEILEFFIENIQRISHIKRLRIHSRIPVVLPERMTTKLLKILSEHRLD 210 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 +L + ++ + + N L+ + + I + +LK IND Sbjct: 211 TVLVVHVNHPNE------LDGNVSKVLKEI---------HKHGIIILNQSTLLKDINDDA 255 Query: 297 RDALNLIKILKGIPAKINLIPF 318 L L I AK+ IP+ Sbjct: 256 NVLYALSTKL--INAKV--IPY 273 >gi|297571030|ref|YP_003696804.1| pyruvate formate-lyase activating enzyme [Arcanobacterium haemolyticum DSM 20595] gi|296931377|gb|ADH92185.1| pyruvate formate-lyase activating enzyme [Arcanobacterium haemolyticum DSM 20595] Length = 308 Score = 38.7 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 36/249 (14%), Positives = 83/249 (33%), Gaps = 53/249 (21%) Query: 122 VGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 GC L C +C+ T K + A ++L ++ +++ G Sbjct: 92 AGCPLRCLYCHNPDTLKMKEGTAVRATDMLEKIARYKAVFTVSKGG-------------- 137 Query: 179 ISNIVMMGMGEPLCNFDNVKKSL-SIASDSMGLSFSKRRITLSTSGF--VPNIARVGEEI 235 + G GEP+ K L + + + + TSGF V + + Sbjct: 138 ---VTFSG-GEPMMQP----KFLARLLAGCKEIGI---HTAVDTSGFLGVNMTEEMLANV 186 Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 + L + + + + L + + N ++I +V++ G+ D+ Sbjct: 187 DLFL-LDVKSGVPEQ----YKRTTGRDLAPTLAFGKRLVE--NGKKIWIRFVLVPGLTDA 239 Query: 296 PRDALNLIKILKGIPA---KINLIPFNPWP-------GCEYL-----CSDQKDIVTFSEC 340 P + + I++ + ++ ++PF+ G EY ++ + Sbjct: 240 PENVNAVADIVQSWASSVERVEVLPFHQMARDKWASLGLEYQLNDVEPPSKEATEAVRDI 299 Query: 341 IKRSGYSSP 349 + G + Sbjct: 300 FRSRGLTVF 308 >gi|170760779|ref|YP_001786591.1| pyruvate formate-lyase-activating enzyme [Clostridium botulinum A3 str. Loch Maree] gi|169407768|gb|ACA56179.1| pyruvate formate-lyase-activating enzyme (PFL-activatingenzyme) (Formate-C-acetyltransferase-activating enzyme) [Clostridium botulinum A3 str. Loch Maree] Length = 299 Score = 38.7 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 32/89 (35%), Gaps = 13/89 (14%) Query: 274 PGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEY------ 326 ++N + ++ N+S A + +LK + A+ + L+PF+ + +Y Sbjct: 210 WAIANGINVLPRIPVIPDFNNSLEHAKRIADLLKDVGARNVQLLPFHQFGEKKYNMLNKV 269 Query: 327 ------LCSDQKDIVTFSECIKRSGYSSP 349 +D+ + + G Sbjct: 270 YALKDVKALHPEDLKNYQKIFINKGIHCF 298 >gi|294678991|ref|YP_003579606.1| MiaB family RNA modification enzyme [Rhodobacter capsulatus SB 1003] gi|294477811|gb|ADE87199.1| RNA modification enzyme, MiaB family [Rhodobacter capsulatus SB 1003] Length = 419 Score = 38.7 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 48/282 (17%), Positives = 95/282 (33%), Gaps = 34/282 (12%) Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ-KLVRNLTAEEILLQVLLARSLLGDFPGCE 165 I R V Q GC C+FC R++ A ++ Q+ + L+ Sbjct: 132 LIDGFGRHRAYVQVQNGCDHRCTFCIIPFGRGNSRSVPAGVVVEQI---KRLVDRGFAEV 188 Query: 166 DIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225 + G+ + S G + MG D V + L + D ++ RI+ S Sbjct: 189 VLTGVDLTSWGADLPGAPRMG--------DLVMRILRLVPD-----LARLRISSIDSIEA 235 Query: 226 PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPL-EMLIDACRHYPGLSNARRITF 284 + + L LH ++++ ++ L + I C L I F Sbjct: 236 DDNLMLAIATEPRLMPHLHLSLQHGDDMILKRMKRRHLRDDAIAFCEEARRLRPG--IVF 293 Query: 285 EYVMLKGINDSPRDALN----LIKILKGIPAKINLIPFNPWPGCEYLCSDQKD---IVTF 337 ++ G + L++ + P++ G + I Sbjct: 294 GADIIAGFPTETEEMFENSLRLVEDCGLTFLHV--FPYSARKGTPAARMPRVAGPVIKDR 351 Query: 338 SECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQE 379 + ++ +G ++ +R + A GQL+ + P++ R E Sbjct: 352 AARLRAAGDAALVRH-----LQAEVGQLREVLTEGPRLGRTE 388 >gi|260881408|ref|ZP_05404337.2| radical SAM domain protein [Mitsuokella multacida DSM 20544] gi|260848878|gb|EEX68885.1| radical SAM domain protein [Mitsuokella multacida DSM 20544] Length = 483 Score = 38.7 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 55/142 (38%), Gaps = 19/142 (13%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 ++C+ C+L C +C+ Q R+++ G I+ ++ Sbjct: 111 SICLMVAQDCNLRCKYCFGDGGSY----------GQ---ERAVMTPEVGKRAIDFLIESC 157 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVG 232 RK + G GEPL N VK A + K ++T++T+G + + Sbjct: 158 GPRKHCEVDFFG-GEPLMNMKTVKAVTEYARQREKETGKKFKLTMTTNGMLLNDENIKWL 216 Query: 233 EEIGVMLAISL---HAVSNDLR 251 + L +SL V++ +R Sbjct: 217 NDNDFSLVLSLDGRKEVNDAMR 238 >gi|158333639|ref|YP_001514811.1| pyruvate formate-lyase activating enzyme [Acaryochloris marina MBIC11017] gi|158303880|gb|ABW25497.1| pyruvate formate-lyase activating enzyme [Acaryochloris marina MBIC11017] Length = 270 Score = 38.7 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 42/270 (15%), Positives = 79/270 (29%), Gaps = 43/270 (15%) Query: 95 RCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLA 154 G +ET + V Q GC L C +C+ R++T QV Sbjct: 29 GLTGRIHSVETCGSVDGPGLRFVVFMQ-GCPLRCLYCHNPD---CRDVTGG----QVTTV 80 Query: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSK 214 +L+ + V EPL + V + L Sbjct: 81 EALIAEIQRYRSYMQASGGGVTVSGG--------EPLLQPEFVA---ELMRQCQALGI-- 127 Query: 215 RRITLSTSGFVPNIARVGEEIGVM-LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHY 273 L TSGF ++ + L + + R I V + P + R+ Sbjct: 128 -HTALDTSGF-SDLTSAQRVLQYTDLVLLDIKSYDPKRFIQVTQVSREP---TLCLARYL 182 Query: 274 PGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNP-----WPGCEY 326 + + +V++ G+ D + L + + + ++ ++PF+ W Y Sbjct: 183 HQI--GKPTWIRFVLVPGLTDDVENVAALAQFVAHLTNIERVEVLPFHQMGAYKWEELGY 240 Query: 327 -------LCSDQKDIVTFSECIKRSGYSSP 349 + + + G S Sbjct: 241 DYLLKETQPPSPELVERVRLQFREYGVSVR 270 >gi|169404759|pdb|3CAN|A Chain A, Crystal Structure Of A Domain Of Pyruvate-Formate Lyase- Activating Enzyme From Bacteroides Vulgatus Atcc 8482 Length = 182 Score = 38.7 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 14/106 (13%), Positives = 34/106 (32%), Gaps = 19/106 (17%) Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK---INLIPF 318 P E+++ R +++G+N ++ + L +P INL+P+ Sbjct: 77 PNELILKNIRRVAEAD--FPYYIRIPLIEGVNADEKNIKLSAEFLASLPRHPEIINLLPY 134 Query: 319 NPW--------------PGCEYLCSDQKDIVTFSECIKRSGYSSPI 350 + G + ++ + + G + I Sbjct: 135 HDIGKGKHAKLGSIYNPKGYKXQTPSEEVQQQCIQILTDYGLKATI 180 >gi|46395073|gb|AAS91670.1| NifN-B [Clostridium beijerinckii] Length = 896 Score = 38.7 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 66/175 (37%), Gaps = 26/175 (14%) Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221 P + ++ S + + + G G+ L NFDNV+++L + + S+ LST Sbjct: 543 PEEAFAKYKLVKSKMDNLKVVGIAGPGDALANFDNVRETLKLIREHD----SEVTFCLST 598 Query: 222 SGFVPNIA--RVGEEIGVMLAISLHAVSNDLRNILVPI------------NRKYPLEMLI 267 +G + + + ++++A+ + + + L + Sbjct: 599 NGLMLPFYAQELINLGVSHVTVTMNAIDPKITAKVYKFVDYLGVTYTGEEAAQILLTNQL 658 Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI-N---LIPF 318 ++ ++ VMLKGIND + K K + A I N +IP Sbjct: 659 SGIKYLADRGIMVKVNI--VMLKGINDH--HIEEVTKKAKELGAGITNIMQMIPV 709 >gi|15895547|ref|NP_348896.1| Heme biosynthesis (nirJ-2) family protein [Clostridium acetobutylicum ATCC 824] gi|15025284|gb|AAK80236.1|AE007729_3 Heme biosynthesis (nirJ-2) family protein [Clostridium acetobutylicum ATCC 824] gi|325509695|gb|ADZ21331.1| Heme biosynthesis (nirJ-2) family protein [Clostridium acetobutylicum EA 2018] Length = 454 Score = 38.7 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 29/195 (14%), Positives = 64/195 (32%), Gaps = 21/195 (10%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 LC++ C+L C +C+ + R ++ + I+ ++ S Sbjct: 96 ALCLNIAHDCNLKCKYCFADEGEYKGC-------------REIMSPEVAKKSIDFVIKHS 142 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV--- 231 RK + + G GEPL FD +K+ + A R T++T+ + N + Sbjct: 143 GPRKNIEVDLFG-GEPLMAFDTIKQVVEYAKKEEKKYNKNIRFTMTTNATLLNDEIMDYL 201 Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVML 289 ++L+ ND + + + ++ + + + Sbjct: 202 DKNMGNIILSFDGRKEVNDKVRVRADGTGSH--DAILKNIKKMVARRDKSKQYYVRGTFT 259 Query: 290 KGINDSPRDALNLIK 304 + D D + Sbjct: 260 RNNTDFFEDVKYIAD 274 >gi|330444985|ref|ZP_08308639.1| kamA family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328493103|dbj|GAA03136.1| kamA family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 340 Score = 38.7 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 34/221 (15%), Positives = 67/221 (30%), Gaps = 46/221 (20%) Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153 EI + +R L V GC++ C +C R+ + Sbjct: 92 DPLEEQQNEIPGLLHKYHNRVLLIVKG--GCAVNCRYC------FRRHFPYSD------- 136 Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213 + + + N V++ G+PL + L + Sbjct: 137 ------NKGNKRQWQQSLEYIAAHPEINEVILSGGDPL------------MAKDHELQW- 177 Query: 214 KRRITLSTSGFVPNIARVGEE------IGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267 + +P+I R+ I + +L + + R + + + Sbjct: 178 ----LIEHIAAIPHIKRLRIHSRLPVVIPNRITDALCQILTETRLQTILVTHINHANEID 233 Query: 268 DACRHYPGLSNARRITF--EYVMLKGINDSPRDALNLIKIL 306 DA + +T + V+LKG+NDS +L + L Sbjct: 234 DALKTAMQKLKQANVTLLNQGVLLKGVNDSVAALTDLSETL 274 >gi|226323711|ref|ZP_03799229.1| hypothetical protein COPCOM_01486 [Coprococcus comes ATCC 27758] gi|225207895|gb|EEG90249.1| hypothetical protein COPCOM_01486 [Coprococcus comes ATCC 27758] Length = 247 Score = 38.7 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 36/249 (14%), Positives = 78/249 (31%), Gaps = 62/249 (24%) Query: 123 GCSLTCSFCY-------TGTQKLV-RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 GC L C FC+ T R +A+E+L Q L R+ + G Sbjct: 30 GCPLRCQFCHNPDTWNMTDKNGATWR--SADELLAQALRYRTYWKNGGG----------- 76 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIA 229 I + G GEPL D + L + + T+ T+G P + Sbjct: 77 -------ITVSG-GEPLLQIDFL---LDLFKKAKAKGI---HTTIDTAGGPFTREEPFFS 122 Query: 230 RVGEEIGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 + E + L + + + L K + +I + + +V Sbjct: 123 KFQELMQYTDLLLVDIKHIDEKSHKELTGKTNK-NILDMIRFLSDI-----KKPVWIRHV 176 Query: 288 MLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKD 333 ++ +D L ++ + ++ ++P++ ++ ++ Sbjct: 177 LVPERSDYDEYLNRLNDFIQTLDNVERVEILPYHTLGAYKWKELGLDYPLEGINPPSRER 236 Query: 334 IVTFSECIK 342 + + + Sbjct: 237 VENAKKILH 245 >gi|229083745|ref|ZP_04216065.1| hypothetical protein bcere0022_4110 [Bacillus cereus Rock3-44] gi|228699549|gb|EEL52214.1| hypothetical protein bcere0022_4110 [Bacillus cereus Rock3-44] Length = 243 Score = 38.7 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 37/243 (15%), Positives = 78/243 (32%), Gaps = 50/243 (20%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C +C+ N EI + +P + I Sbjct: 28 GCLLRCQYCH--------NADTWEI------GKGKEITVEEVMQDVTCYLPFIEASGGGI 73 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--------FVPNIARVGEE 234 + G GEPL D + + + S T+ +SG F + + + Sbjct: 74 TVSG-GEPLLQLDFLIELFKKCKE------SGIHTTIDSSGGCYSEEPEFQRKLDILMDY 126 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 ++L + L + L E ++ R+ + I +V++ G+ D Sbjct: 127 TDLVL-LDLKHIDPKKHRKLTGKTN----EHILQFARYLSDK--QKPIWVRHVLVPGVTD 179 Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWP-------GCEY-----LCSDQKDIVTFSEC 340 + D L ++ + K+ ++P++ G +Y +K++ Sbjct: 180 NEEDLQGLSNFIQSLSNVKKVEVLPYHKLGVYKWEALGHKYPLEGVEPPTEKNVQNAKNI 239 Query: 341 IKR 343 ++ Sbjct: 240 LQA 242 >gi|187931527|ref|YP_001891511.1| aminomutase [Francisella tularensis subsp. mediasiatica FSC147] gi|187712436|gb|ACD30733.1| aminomutase [Francisella tularensis subsp. mediasiatica FSC147] Length = 328 Score = 38.7 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 44/262 (16%), Positives = 83/262 (31%), Gaps = 56/262 (21%) Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 LL Q E++D+ S D ++ + R + + +Q Sbjct: 62 LLKQVLPTADEEVIDQAYSSD----------PLDEKNYNKVPGLLHKYHGR--VLLIAQT 109 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 C++ C +C+ N+ PG +D + Sbjct: 110 SCAVHCRYCFRKEFDYKENI-------------------PGRKDWLQAFEYIANDQSIEE 150 Query: 183 VMMGMGEPLCNFDNVKKS----LSIASDSMGLSF-SKRRITLSTSGFVPNIARVGEE-IG 236 V++ G+PL N D + + + S L S+ + L + + E + Sbjct: 151 VILSGGDPLLNNDEILEFFIENIQRISHIKRLRIHSRIPVVLPERMTTKLLKILSEHRLD 210 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 +L I ++ + + N L+ + + I + +LK IND Sbjct: 211 TVLVIHVNHPNE------LDGNVSKVLKEI---------HKHGIIILNQSTLLKDINDDA 255 Query: 297 RDALNLIKILKGIPAKINLIPF 318 L L I AK+ IP+ Sbjct: 256 NVLYALSTKL--INAKV--IPY 273 >gi|171184540|ref|YP_001793459.1| molybdenum cofactor biosynthesis protein A [Thermoproteus neutrophilus V24Sta] gi|170933752|gb|ACB39013.1| molybdenum cofactor biosynthesis protein A [Thermoproteus neutrophilus V24Sta] Length = 325 Score = 38.7 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 36/194 (18%), Positives = 68/194 (35%), Gaps = 39/194 (20%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+ +C FC+ Q R G + ED +S+ Sbjct: 21 CNYSCIFCHFEGQARRR------------------GVYLTAEDYGFATSVFRKVGVSDFK 62 Query: 184 MMGMGEPLC--NFDNVKKSLSIASDSMGLSFSKRR--ITLSTSGFV--PNIARVGEEIGV 237 + G GEPL + D V + +K +TL+T+G + A++ Sbjct: 63 ITG-GEPLLRRDIDAVV-----------YNIAKTGGAVTLTTNGLLLERWAAKLAAAGLQ 110 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 + +S+H+ + + V L+ ++ R S + V+L+G+N Sbjct: 111 RVNVSVHSTDPGMYSK-VTGAPPAALKAVLRGLRE--ARSLGISLKINVVVLRGVNTDRD 167 Query: 298 DALNLIKILKGIPA 311 L+K+ + A Sbjct: 168 SVKELVKLAASLDA 181 >gi|57340042|gb|AAW50008.1| hypothetical protein FTT0750 [synthetic construct] Length = 363 Score = 38.7 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 44/262 (16%), Positives = 83/262 (31%), Gaps = 56/262 (21%) Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 LL Q E++D+ S D ++ + R + + +Q Sbjct: 88 LLKQVLPTADEEVIDQAYSSD----------PLDEKNYNKVPGLLHKYHGR--VLLIAQT 135 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 C++ C +C+ N+ PG +D + Sbjct: 136 SCAVHCRYCFRKEFDYKENI-------------------PGRKDWLQAFEYIANDQSIEE 176 Query: 183 VMMGMGEPLCNFDNVKKS----LSIASDSMGLSF-SKRRITLSTSGFVPNIARVGEE-IG 236 V++ G+PL N D + + + S L S+ + L + + E + Sbjct: 177 VILSGGDPLLNNDEILEFFIENIQRISHIKRLRIHSRIPVVLPERITTKLLKILSEHRLD 236 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 +L I ++ + + N L+ + + I + +LK IND Sbjct: 237 TVLVIHVNHPNE------LDGNVSKVLKEI---------HKHGIIILNQSTLLKDINDDA 281 Query: 297 RDALNLIKILKGIPAKINLIPF 318 L L I AK+ IP+ Sbjct: 282 NVLYALSTKL--INAKV--IPY 299 >gi|284162243|ref|YP_003400866.1| MiaB-like tRNA modifying enzyme [Archaeoglobus profundus DSM 5631] gi|284012240|gb|ADB58193.1| MiaB-like tRNA modifying enzyme [Archaeoglobus profundus DSM 5631] Length = 423 Score = 38.7 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 2/100 (2%) Query: 92 FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG-TQKLVRNLTAEEILLQ 150 R EI V + VS GC+ CSFC T + +R+ E I+ + Sbjct: 115 LIDRTDVDKSEISCVKRRLRENAIAIVSIAEGCTGRCSFCATRFARGRLRSFKFESIVDE 174 Query: 151 VLL-ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGE 189 V + + G GR + ++ + E Sbjct: 175 VRKCVENGFKEIQITSQDTGAYGLDKGRYMLPDLLRAISE 214 >gi|150003986|ref|YP_001298730.1| pyruvate-formate lyase-activating enzyme [Bacteroides vulgatus ATCC 8482] gi|149932410|gb|ABR39108.1| pyruvate-formate lyase-activating enzyme [Bacteroides vulgatus ATCC 8482] Length = 302 Score = 38.7 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 14/106 (13%), Positives = 34/106 (32%), Gaps = 19/106 (17%) Query: 262 PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK---INLIPF 318 P E+++ R +++G+N ++ + L +P INL+P+ Sbjct: 197 PNELILKNIRRVAEAD--FPYYIRIPLIEGVNADEKNIKLSAEFLASLPRHPEIINLLPY 254 Query: 319 NPW--------------PGCEYLCSDQKDIVTFSECIKRSGYSSPI 350 + G + ++ + + G + I Sbjct: 255 HDIGKGKHAKLGSIYNPKGYKMQTPSEEVQQQCIQILTDYGLKATI 300 >gi|323487508|ref|ZP_08092802.1| pyruvate-formate lyase-activating enzyme [Clostridium symbiosum WAL-14163] gi|323694439|ref|ZP_08108610.1| pyruvate-formate lyase-activating enzyme [Clostridium symbiosum WAL-14673] gi|323399190|gb|EGA91594.1| pyruvate-formate lyase-activating enzyme [Clostridium symbiosum WAL-14163] gi|323501520|gb|EGB17411.1| pyruvate-formate lyase-activating enzyme [Clostridium symbiosum WAL-14673] Length = 280 Score = 38.7 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 72/198 (36%), Gaps = 30/198 (15%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+ C FC + EI+ +L L + M V R I Sbjct: 69 GCNFACPFCQNHEISMAG---EREIIDGLLPIYHL-----SPGEAVKMAAEYVNRGNIGI 120 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG--VMLA 240 EPL N++ V+ +I + MGL + + T+G V + + E + Sbjct: 121 AYT-YNEPLINYEYVRD-CAIPAREMGL-----KNVVITNGSVS-LEVLDEVLPWLDAFN 172 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 I L +++ ++ L D R + + +++ G+ND+ R+ Sbjct: 173 IDLKGFTDNFYRMVH--------GELEDVKRFIVRAAGKSHVEITTLIIPGLNDTEREIE 224 Query: 301 NLIKIL----KGIPAKIN 314 + + + + IP +N Sbjct: 225 EMAEWIASVRRDIPLHLN 242 >gi|210613376|ref|ZP_03289696.1| hypothetical protein CLONEX_01903 [Clostridium nexile DSM 1787] gi|210151218|gb|EEA82226.1| hypothetical protein CLONEX_01903 [Clostridium nexile DSM 1787] Length = 250 Score = 38.7 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 28/210 (13%), Positives = 63/210 (30%), Gaps = 29/210 (13%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C +C+ N E + E +EG + Sbjct: 28 GCPMRCLYCH--------NPDTWE--------PNKGTQMTVDEVLEGFYSNMPFYHNGGV 71 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSM---GLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 + G GEP+ D + + + + S F+ + + E ++ Sbjct: 72 TVTG-GEPMMQMDFLIELFTKLHKDGIHTCIDSSGIMFQPDNETFMNKLDTLLEVTD-LI 129 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 + + ++ L + I A Y + + +V++ GI Sbjct: 130 MLDIKHINPQKHKELTAHSN-----ERILAFAKYLDEKH-IPVWIRHVVVPGITLYKEYL 183 Query: 300 LNLIKILKGI-PAK-INLIPFNPWPGCEYL 327 L L + ++++P++ +Y Sbjct: 184 EELGHFLGTLNNVHALDVLPYHSMGKVKYE 213 >gi|328947666|ref|YP_004365003.1| Radical SAM domain protein [Treponema succinifaciens DSM 2489] gi|328447990|gb|AEB13706.1| Radical SAM domain protein [Treponema succinifaciens DSM 2489] Length = 466 Score = 38.7 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 42/238 (17%), Positives = 80/238 (33%), Gaps = 31/238 (13%) Query: 124 CSLTCSFCYTG------TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 C+L C +C+ G K + +EI + + P Sbjct: 99 CNLACKYCFLGNNNKDKRIKFHKENMTKEIAE----------KGVAYFVKQLELQPLDES 148 Query: 178 KISNIVMMGMGEPLCNFD----NVKKSLSIA-SDSMGLSFSKRRITLSTSGFVPNIARV- 231 + NI+ G GEPL NF+ V K + S + + ++ T+G + R+ Sbjct: 149 RKPNIIFYG-GEPLINFEILDFVVCKFEELKESHPVLKNI---EYSIVTNGLLLTEERLR 204 Query: 232 -GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290 ++ V +AIS+ + V +I S ++ + + Sbjct: 205 RLHQLKVAIAISIDGCDEKANQMRVDTAGNTVFNKIIKTLD--LAKSIEIPVSLSITLTE 262 Query: 291 GINDSPRDALNLIKI--LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGY 346 + L LIK +KG+ I + N Y + I+ + +++ G Sbjct: 263 ESIKNKDAMLELIKKYDIKGLGFNIMMSDSNTKLPESYNVAAANFIIDMFKELRKLGI 320 >gi|197118465|ref|YP_002138892.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase [Geobacter bemidjiensis Bem] gi|197087825|gb|ACH39096.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase [Geobacter bemidjiensis Bem] Length = 285 Score = 38.7 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 77/232 (33%), Gaps = 32/232 (13%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C +C R+ A E + +R L D E M P G I I Sbjct: 35 CNIKCGYCT------RRHDCANE-SRPGVTSRLLSPDEAIVRVREVMASPITGPIIKVIG 87 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVMLAI 241 + G G+PL N + + F + LST+G + + E L + Sbjct: 88 IAGPGDPLFN-EETFDTFRYVDRE----FPQLIKCLSTNGLLLPDKMPVLKEIGLHSLTV 142 Query: 242 SLHAVSNDLRNILVPI----NRKYPLEMLIDACRH------YPGLSNARRITFEYVMLKG 291 +L+A+ + + KY E + I V++ G Sbjct: 143 TLNALDPKVGGKIYSHVFYKGTKYTGEEGAEILVRNQLEGIRQAAELGLTIKINTVLIPG 202 Query: 292 INDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEY---LCSDQKDIVTFSE 339 +ND + K +K + A + N++P P ++ + + Sbjct: 203 VND--EQIPLISKKVKELGAFVMNIMPL--IPQADFAHIEPPSADRLDALRQ 250 >gi|20094388|ref|NP_614235.1| pyruvate-formate lyase-activating enzyme [Methanopyrus kandleri AV19] gi|19887462|gb|AAM02165.1| Pyruvate-formate lyase-activating enzyme [Methanopyrus kandleri AV19] Length = 346 Score = 38.7 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 77/233 (33%), Gaps = 40/233 (17%) Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC+ C R+ +I +++ + P E ++ + R Sbjct: 91 VGCNFRC-----------RHCQNWQI------SQAGPEEVPLEEWPPERIVGAAKRTGCE 133 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVML 239 V EP+ + ++ A GL T+GF +GE + Sbjct: 134 SVAFTYNEPIIGLEYTLETFE-ACREEGLGC-----VYVTNGFATRRTAKILGEVLDAAN 187 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 + R+ + + + L+ ++ C+ + + +++ G NDS +A Sbjct: 188 VDLKAFTEDFYRD----VAKAW-LKPVLRTCKIW--KDMGVHVELTTLVIPGYNDSEEEA 240 Query: 300 LNLIKILK-----GIPAKINLIPFNPWP-GCEYLCSDQKDIVTFSECIKRSGY 346 + + ++ P ++ F+P + + + I F E G Sbjct: 241 RRIARWIRKELGPDTPWHVS--RFHPDYRMLDVPPTPVETIEKFVEIGYEEGL 291 >gi|330509128|ref|YP_004385556.1| radical SAM domain-containing protein [Methanosaeta concilii GP-6] gi|328929936|gb|AEB69738.1| radical SAM domain protein [Methanosaeta concilii GP-6] Length = 495 Score = 38.7 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 59/155 (38%), Gaps = 11/155 (7%) Query: 116 LCVSSQVGCSLTCSFC-YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 L +S C+ C +C ++ + R+ + + + + + + Sbjct: 101 LTLSVTEDCNFRCKYCAFSDLYEYTRSQS-----NKYMKSDTAKRAIDYYFSLLKEGARY 155 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR--VG 232 ++ + G GEPL NF+ +K + + G K R TL+T+G + + + Sbjct: 156 NPKRQPALAFYG-GEPLLNFNLIKICVEHIENEYGNC--KTRYTLTTNGSLLDKEKANWL 212 Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267 E +A+SL + + V N K ++ Sbjct: 213 MEHDFSIAVSLDGPEEEHNRLRVYPNGKGTFREVM 247 >gi|238917088|ref|YP_002930605.1| 2-alkenal reductase [Eubacterium eligens ATCC 27750] gi|238872448|gb|ACR72158.1| 2-alkenal reductase [Eubacterium eligens ATCC 27750] Length = 446 Score = 38.7 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 42/204 (20%), Positives = 77/204 (37%), Gaps = 24/204 (11%) Query: 82 CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLC-VSSQVGCSLTCSFCYTGT-QKLV 139 D T +L+ + E E++ I + T + Q GC+ CS+C + V Sbjct: 122 ADKTS-YLVDINDKY----QEYESLKINQTGEHTRAYIKIQDGCNQFCSYCIIPYVRGRV 176 Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKK 199 R+ E+I+ +V ++L + G+ I S G + NI ++ + + Sbjct: 177 RSRKPEDIVNEV---KTLAATGVKEVVLTGIHISSYGTDLENISLI----------ELIE 223 Query: 200 SLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINR 259 ++ + + T F IA + E+I +SL + + L +NR Sbjct: 224 AIHEIEGIKRIRLGSLEPRIITEEFAKRIAGL-EKICPHFHLSLQSGCDKT---LKAMNR 279 Query: 260 KYPLEMLIDACRHYPGLSNARRIT 283 KY E + C + IT Sbjct: 280 KYNTEEYYEGCVKLREVFENPAIT 303 >gi|228477166|ref|ZP_04061804.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus salivarius SK126] gi|228251185|gb|EEK10356.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus salivarius SK126] Length = 266 Score = 38.7 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 27/215 (12%), Positives = 72/215 (33%), Gaps = 37/215 (17%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C +C+ N + + + E + + I Sbjct: 35 GCKMRCQYCH--------NPDTWAM-----ESNKAVERTVEDVLDEALRFRHFWGEQGGI 81 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--------PNIARVGEE 234 + G GE + D V + +++ L TL T GF + ++ Sbjct: 82 TVSG-GEAMLQIDFVTA---LFTEAKKLGI---HCTLDTCGFAYRNTPEYHEVVDKLLAV 134 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 ++L + + + + + P + +++ ++ + +V++ G+ D Sbjct: 135 TDLVL-LDIKEIDPEQ----HKFVTRQPNKNILEFAQYLSDK--QVPVWIRHVLVPGLTD 187 Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327 + L + +K + K ++P++ ++ Sbjct: 188 FDEHLVKLGEFVKTLKNVDKFEILPYHTMGEFKWR 222 >gi|158335384|ref|YP_001516556.1| radical SAM domain-containing protein [Acaryochloris marina MBIC11017] gi|158305625|gb|ABW27242.1| radical SAM domain protein [Acaryochloris marina MBIC11017] Length = 361 Score = 38.7 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 16/131 (12%) Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI-TFEYVMLKGINDSPR 297 L + L AV +R+ ++P + PL +A + ++ T+ L D+ Sbjct: 226 LGMHLEAVDPQVRSQIMPGKAEVPLSHYFEAFDAAVQVFGWGQVSTYLLAGLGDSLDTLV 285 Query: 298 DA-LNLIKILKGI-PAKINLIPFNPWPGCEYLCSDQKDIVTFSE----CIKRSGYSSPIR 351 +A LI + G+ P + +P + P + + + T + +K++G SS Sbjct: 286 EASQRLIDL--GVYPFVVPFVPISSTPLANHPAPSSEFMFTLYQQVGAMLKQAGMSS--- 340 Query: 352 TPRGLDILAAC 362 DI A C Sbjct: 341 ----ADINAGC 347 >gi|258513425|ref|YP_003189647.1| Radical SAM domain-containing protein [Desulfotomaculum acetoxidans DSM 771] gi|257777130|gb|ACV61024.1| Radical SAM domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 421 Score = 38.7 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 39/255 (15%), Positives = 76/255 (29%), Gaps = 60/255 (23%) Query: 87 KWLLRFPARCIGGPVEIETVYIP-------EKSRGTLCVSSQVGCSLTCSFCYTGTQKLV 139 K FP I + + ++ R + + C+ C C + Sbjct: 149 KKRYEFPGNRIIEQLAVCSMNYHCLTAQNLFYERWEAGLPASPACNARCLGCIS------ 202 Query: 140 RNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMG---EPLCNFDN 196 L E +S + P ++ + + R IV G G EPL + Sbjct: 203 --LQPSECCP---SPQSRINFTPSVSELVELAAAHLSRASEAIVSGGQGCEGEPLMAYAV 257 Query: 197 VKKS---LSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNI 253 ++ + ++ L+ + GF + ++ + A + +R Sbjct: 258 WSQAIKEIRRITNRGTLNINTNG------GFTRGLDKLCD-----------AGLDSIRVS 300 Query: 254 LV------PINRKYPLEMLIDACRH--YPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 L P++ +D + S I+ ++ GI D + L Sbjct: 301 LFSARTASYRAYHCPVDYDLDDVKRSLLLAKSYGVYISLNLLVFPGITDREEEMNAL--- 357 Query: 306 LKGIPAKINLI-PFN 319 INLI +N Sbjct: 358 -------INLINEYN 365 >gi|119486797|ref|ZP_01620772.1| nitrogen fixation protein [Lyngbya sp. PCC 8106] gi|119456090|gb|EAW37223.1| nitrogen fixation protein [Lyngbya sp. PCC 8106] Length = 486 Score = 38.7 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 38/241 (15%), Positives = 89/241 (36%), Gaps = 46/241 (19%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C++C N + ++ ++L P + +V+ +++ + Sbjct: 71 CNIQCNYCNRKYD--CANESRPGVVSELL--------SPEEAAHKVLVVAGKIPQMTVLG 120 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVMLAI 241 + G G+PL N + ++ + +D ++ LST+G I R+ + I Sbjct: 121 IAGPGDPLANPEKTFRTFELIADKA----PDIKLCLSTNGLMLPDYIDRIKALNIDHVTI 176 Query: 242 SLHAVSNDLRNILVPIN----RKY-PLE----------MLIDACRHYPGLSNARRITFEY 286 +++ V + ++ P R+Y +E +DA R L + Sbjct: 177 TINMVDPKIGEMIYPWVHYGRRRYRGIEGVKILHERQMEGLDALREADILCKVNSV---- 232 Query: 287 VMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPG-------CEYLCSDQKDIVTFS 338 M+ G+ND + ++++ A + N++P P K++ Sbjct: 233 -MIPGVND--EHLQEVHEVVRSKGAFLHNIMPLISAPEHGTHYGLTGQRGPTPKELKALQ 289 Query: 339 E 339 + Sbjct: 290 D 290 >gi|254292479|ref|YP_003058502.1| MiaB-like tRNA modifying enzyme [Hirschia baltica ATCC 49814] gi|254041010|gb|ACT57805.1| MiaB-like tRNA modifying enzyme [Hirschia baltica ATCC 49814] Length = 435 Score = 38.7 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 63/188 (33%), Gaps = 28/188 (14%) Query: 111 KSRGTLCVSSQVGCSLTCSFCYTGTQ-KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169 + R V Q GC C+FC R++ A E++ QV + Sbjct: 148 EGRARAFVQVQTGCDHRCTFCIIPYGRGNSRSVPAGEVVDQV---------------RQL 192 Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDN----VKKSLSIASDSMGLSFSKRRITLSTSGFV 225 + ++ + + G L N N V + L +A D L S ++ Sbjct: 193 VAKGHYEVVLTGVDLTSWGADLPNAPNLGNLVARILKLAPDLKQLRLS----SIDAIEID 248 Query: 226 PNIARVGEEIGVMLAISLHAVSNDLRNILVPINR-KYPLEMLIDACRHYPGLSNARRITF 284 + + +A LH N+++ + ++ E I+ C+ I+F Sbjct: 249 DQLFDLIAHDK-RIAPHLHLSFQSGDNMILKRMKRRHSREDAINLCQRLRAARPE--ISF 305 Query: 285 EYVMLKGI 292 ++ G Sbjct: 306 GADLIAGF 313 >gi|31790361|gb|AAP58618.1| putative 2-methylthioadenine synthetase [uncultured Acidobacteria bacterium] Length = 450 Score = 38.7 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 61/195 (31%), Gaps = 22/195 (11%) Query: 118 VSSQVGCSLTCSFCYTGTQ-KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176 + GC C+FC+ R+ I+ + A+ L + + G Sbjct: 153 IKIAEGCDRPCAFCFIPQMRGHFRSRRFGSIVAE---AQQLAEEGVKELILVAQDSSRYG 209 Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236 + D + L S + G+ + + T T + + EE Sbjct: 210 EDLGKD------------DALAHLLRELSHTDGIEWVRVMYTYPTHISDGFLEVLAEEAK 257 Query: 237 V--MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 L + L S ++ ++ + LE LI R A R TF G D Sbjct: 258 AVKYLDMPLQHASQNVLKLMKRGGNRASLERLIKRVRDRVP-EIAVRTTF-ITGFPGETD 315 Query: 295 SPRDALNLIKILKGI 309 D L+ +K + Sbjct: 316 --EDFEELLTFVKNV 328 >gi|315611872|ref|ZP_07886791.1| pyruvate formate-lyase activating enzyme [Streptococcus sanguinis ATCC 49296] gi|315316050|gb|EFU64083.1| pyruvate formate-lyase activating enzyme [Streptococcus sanguinis ATCC 49296] Length = 264 Score = 38.7 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 69/214 (32%), Gaps = 35/214 (16%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C +C+ N + E + I Sbjct: 37 GCHMRCQYCH--------NPDTWAM-----ETNKSRERTVDDVLTEALRYRGFWGDKGGI 83 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF-----VPNIARVGEEIGV 237 + G GE L D + +L + G+ TL T + + + + V Sbjct: 84 TVSG-GEALLQIDFLI-ALFTKAKEKGI-----HCTLDTCALPFRNKPRYLEKFNKLMAV 136 Query: 238 M--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 + + + ++ + I+ K I AC Y + + +V++ G+ D Sbjct: 137 TDLVLLDIKEINEEQHKIVTSQTNKN-----ILACAQYLS-DIGKPVWIRHVLVPGLTDR 190 Query: 296 PRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327 D + L K +K + K ++P++ ++ Sbjct: 191 DDDLIELGKFVKTLKNVDKFEILPYHTMGEFKWR 224 >gi|210616813|ref|ZP_03291237.1| hypothetical protein CLONEX_03458 [Clostridium nexile DSM 1787] gi|210149631|gb|EEA80640.1| hypothetical protein CLONEX_03458 [Clostridium nexile DSM 1787] Length = 387 Score = 38.7 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 19/122 (15%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L C++CY G K L + + I +V + + N+ Sbjct: 13 CNLKCNYCYEGNDKR----------------SKTLNNQDLEKVISFLVQNNPQNETINLT 56 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLAI 241 +G GEPL N D + + I + S + ++T+G + I ++ +E V ++I Sbjct: 57 FLG-GEPLLNKDAIYLCMDIINHKWSQSKELFKFHITTNGILLDKEIIKLFKENNVDVSI 115 Query: 242 SL 243 S+ Sbjct: 116 SI 117 >gi|56707865|ref|YP_169761.1| hypothetical protein FTT_0750 [Francisella tularensis subsp. tularensis SCHU S4] gi|110670336|ref|YP_666893.1| hypothetical protein FTF0750 [Francisella tularensis subsp. tularensis FSC198] gi|134301708|ref|YP_001121676.1| hypothetical protein FTW_0659 [Francisella tularensis subsp. tularensis WY96-3418] gi|224456943|ref|ZP_03665416.1| hypothetical protein FtultM_04156 [Francisella tularensis subsp. tularensis MA00-2987] gi|254370360|ref|ZP_04986365.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254874680|ref|ZP_05247390.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis MA00-2987] gi|56604357|emb|CAG45383.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110320669|emb|CAL08766.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC198] gi|134049485|gb|ABO46556.1| putative lysine 2,3-aminomutase, YodO family protein [Francisella tularensis subsp. tularensis WY96-3418] gi|151568603|gb|EDN34257.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254840679|gb|EET19115.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis MA00-2987] gi|282159045|gb|ADA78436.1| putative lysine 2,3-aminomutase, YodO family protein [Francisella tularensis subsp. tularensis NE061598] Length = 328 Score = 38.7 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 44/262 (16%), Positives = 83/262 (31%), Gaps = 56/262 (21%) Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 LL Q E++D+ S D ++ + R + + +Q Sbjct: 62 LLKQVLPTADEEVIDQAYSSD----------PLDEKNYNKVPGLLHKYHGR--VLLIAQT 109 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 C++ C +C+ N+ PG +D + Sbjct: 110 SCAVHCRYCFRKEFDYKENI-------------------PGRKDWLQAFEYIANDQSIEE 150 Query: 183 VMMGMGEPLCNFDNVKKS----LSIASDSMGLSF-SKRRITLSTSGFVPNIARVGEE-IG 236 V++ G+PL N D + + + S L S+ + L + + E + Sbjct: 151 VILSGGDPLLNNDEILEFFIENIQRISHIKRLRIHSRIPVVLPERITTKLLKILSEHRLD 210 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 +L I ++ + + N L+ + + I + +LK IND Sbjct: 211 TVLVIHVNHPNE------LDGNVSKVLKEI---------HKHGIIILNQSTLLKDINDDA 255 Query: 297 RDALNLIKILKGIPAKINLIPF 318 L L I AK+ IP+ Sbjct: 256 NVLYALSTKL--INAKV--IPY 273 >gi|325263807|ref|ZP_08130540.1| putative pyruvate formate-lyase-activating enzyme [Clostridium sp. D5] gi|324030845|gb|EGB92127.1| putative pyruvate formate-lyase-activating enzyme [Clostridium sp. D5] Length = 288 Score = 38.7 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 60/182 (32%), Gaps = 31/182 (17%) Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLA 240 + G GE FD + ++L + + + T+G P + +++ Sbjct: 118 VTFTG-GEATLQFDELLEALKRLTA------AGIHTAVETNGAHPRLQECFPYISQLIMD 170 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 L R + I+ R L I ++ +NDS D Sbjct: 171 CKLCDEEKHRRATSISNA------QTIENIRRAAELHPCLHIRVP--LIGKVNDSEEDIR 222 Query: 301 NLIKI---LKGIPAKINLIPFNPW-------PGCEYLCSD-----QKDIVTFSECIKRSG 345 + ++ L+ L+ ++ + G EY +D ++ + F + I+ G Sbjct: 223 DFLEFFQSLRDGNVTFELLSYHEFGKKKWEQCGWEYQMTDAAHVKEETVKKFRDSIRGLG 282 Query: 346 YS 347 + Sbjct: 283 LN 284 >gi|290955630|ref|YP_003486812.1| oxidoreductase [Streptomyces scabiei 87.22] gi|260645156|emb|CBG68242.1| Putative oxidoreductase [Streptomyces scabiei 87.22] Length = 244 Score = 38.7 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 44/245 (17%), Positives = 67/245 (27%), Gaps = 48/245 (19%) Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC L C +C R E Sbjct: 29 AGCPLRCLYCANPD---------------TWHMRDGKETTVDEVMAEIEKYRPFLTTAGG 73 Query: 182 IVMMGMGEPLCNFDNVKKSL-SIASDSMGLSFSKRRITLSTSGF--VPNIARVGEEIG-V 237 V + GEPL I S L L TSGF V + + V Sbjct: 74 GVTLTGGEPLLQ----SGFTGEILRRSKELGL---HTALDTSGFLGVRATDELLDATDLV 126 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 +L I V+ R + +D + YV++ G D P Sbjct: 127 LLDIKSFDVTTYRRLTGGELGPTLNFATRLDRL--------GVAMWIRYVLVPGWTDEPE 178 Query: 298 DALNLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIKR 343 L + + G+ A +++++PF+ +Y C D I SE + Sbjct: 179 SVEGLARFVSGLGAVDRVDVLPFHKLGAAKYEALGLPFPLRDTPCPDADLIERISERFRT 238 Query: 344 SGYSS 348 G + Sbjct: 239 HGVRA 243 >gi|196231514|ref|ZP_03130372.1| RNA modification enzyme, MiaB family [Chthoniobacter flavus Ellin428] gi|196224367|gb|EDY18879.1| RNA modification enzyme, MiaB family [Chthoniobacter flavus Ellin428] Length = 463 Score = 38.7 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 43/282 (15%), Positives = 93/282 (32%), Gaps = 50/282 (17%) Query: 43 YVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVE 102 + R + + +E+R L ++ +E S + T + Sbjct: 106 FHRVAEYVEQIIQRKRELRERLMDDARFSIVDVEEEAGSQE-TIR--------------- 149 Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYT-GTQKLVRNLTAEEILLQV--LLARSLLG 159 E V + + T VS GC++ C+FC T+ R+ EEI+ +V L+AR + Sbjct: 150 -EHVL--TEKQATAFVSIMQGCNMHCTFCIVPSTRGAERSRRIEEIVHEVEGLVARGVKE 206 Query: 160 DFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITL 219 + + ++ + + E + + +K+ L + + F Sbjct: 207 VTLLGQIVNLFGRHEFEKQDGKSPFVQLLEAVHAIEGLKR-LR-FTSPHPIGFRDD---- 260 Query: 220 STSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRK-------YPLEMLIDACRH 272 V A + + + +H + ++ + + L + A R Sbjct: 261 ----LVNAFAELPKLMP-----HVHLPMQSGSDRILKAMHRGYTAEKYFSLTEKLRAARP 311 Query: 273 YPGLSNARRITFEYVMLKGINDSPRDA-LNLIKILKGIPAKI 313 ++ + F G D A +L++ + A I Sbjct: 312 DIAMTTDIIVGF-----PGETDEDYAATRDLVQRVGFDNAYI 348 >gi|163816144|ref|ZP_02207512.1| hypothetical protein COPEUT_02328 [Coprococcus eutactus ATCC 27759] gi|158448564|gb|EDP25559.1| hypothetical protein COPEUT_02328 [Coprococcus eutactus ATCC 27759] Length = 224 Score = 38.7 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 67/195 (34%), Gaps = 28/195 (14%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C +C FC T+K N T L P E++ + I+ +V Sbjct: 42 CPCSCVFCLRQTKKQQENNTLW-----------LKDGEPSIEEVLELFSKYDLNIINELV 90 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIA------RVGEEIGV 237 G GEPL ++V + ++ ++ L+T G I + Sbjct: 91 FCGFGEPLERLEDVCAVIDSLKNTY----PNLKVRLNTIGLANLIYGRDVTPELEGRFD- 145 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 ++ISL+A + L +Y + A + + L+ ++ + P Sbjct: 146 TVSISLNAPDENEFLELTRS--RYGI-QSYAAIKDFAVLAKRYVPHVVMTVVDKV--MPE 200 Query: 298 DALNLIK-ILKGIPA 311 D + L + I K + Sbjct: 201 DKIELCRQICKDLGV 215 >gi|190892073|ref|YP_001978615.1| molybdenum cofactor biosynthesis protein [Rhizobium etli CIAT 652] gi|226707376|sp|B3PQ08|MOAA_RHIE6 RecName: Full=Molybdenum cofactor biosynthesis protein A gi|190697352|gb|ACE91437.1| molybdenum cofactor biosynthesis protein [Rhizobium etli CIAT 652] Length = 348 Score = 38.7 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 61/186 (32%), Gaps = 26/186 (13%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C C++C + D E+++ + + + + I Sbjct: 40 CDFRCTYCMAENMTFLP-----------------KKDLLTLEELDRLCSAFIAKGVRKIR 82 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 + G GEPL N+ + +G + +T + S + + E + +SL Sbjct: 83 LTG-GEPLV-RKNIMYLVRQLGKKIGAGLDELTLTTNGSQLSRHAEELYECGVRRINVSL 140 Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 + + + + IDA + RI V LKG ND+ +L+ Sbjct: 141 DTLDPEKFRKITRWGDFSKVMEGIDAAQ-----KAGIRIKLNAVALKGFNDAE--IPDLL 193 Query: 304 KILKGI 309 + G Sbjct: 194 RFAHGR 199 >gi|326792964|ref|YP_004310785.1| radical SAM protein [Clostridium lentocellum DSM 5427] gi|326543728|gb|ADZ85587.1| Radical SAM domain protein [Clostridium lentocellum DSM 5427] Length = 200 Score = 38.3 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 36/204 (17%), Positives = 70/204 (34%), Gaps = 26/204 (12%) Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167 I + +L V+ C +C+FC + + Q L P E+I Sbjct: 3 IIYQIENSLYVNLTNKCPCSCTFCVRID---------HDTVGQ--NDNLWLPHDPSLEEI 51 Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227 + IV G GEPL + V + + SK +I ++T+G Sbjct: 52 LDDLKNYNLDSYDQIVFCGYGEPLTRIETVIEVCKYIREK-----SKIKIRVNTNGLADL 106 Query: 228 I-----ARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI 282 I A + E ++ISL+A + + L ++ + DA + Sbjct: 107 IHNKPTAELLEGYVDAISISLNAPNKE--AYLKVARPRFGI-ESFDALLKFATDCKKYIG 163 Query: 283 TFEYVMLKGI--NDSPRDALNLIK 304 + + ++ + + + L + Sbjct: 164 SVTFSVVDKVISKEQIEASRKLAE 187 >gi|14591390|ref|NP_143468.1| hypothetical protein PH1615 [Pyrococcus horikoshii OT3] gi|3258044|dbj|BAA30727.1| 420aa long hypothetical protein [Pyrococcus horikoshii OT3] Length = 420 Score = 38.3 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 36/207 (17%), Positives = 78/207 (37%), Gaps = 25/207 (12%) Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167 + ++ + V GC+++C FC R L V+ L+ F Sbjct: 109 LIDRGTNLIQVRGSTGCNMSCIFCSVDEGPYSR----TRKLDFVVDIDYLMKWFNLVAKE 164 Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-- 225 +G + + + GEPL + + + + D +S I++ ++G + Sbjct: 165 KGKGLEAH--------LDAQGEPLM-YPFIVELVQALRDHPHVSV----ISMQSNGVLLD 211 Query: 226 -PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF 284 + + E + +S+H++ +L+ I + Y L +++ + Sbjct: 212 DKLVEELAEAGLDRVNLSIHSLDPKKAKMLMGI-KDYDLSHVLEMAEALVNA--GIDVLI 268 Query: 285 EYVMLKGINDSPRDALNLIKILKGIPA 311 V++ GIND +A I+ + I A Sbjct: 269 APVIIFGIND--DEAEAFIEFARKIGA 293 >gi|288942731|ref|YP_003444971.1| nitrogenase cofactor biosynthesis protein NifB [Allochromatium vinosum DSM 180] gi|288898103|gb|ADC63939.1| nitrogenase cofactor biosynthesis protein NifB [Allochromatium vinosum DSM 180] Length = 500 Score = 38.3 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 60/157 (38%), Gaps = 23/157 (14%) Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVML--- 239 + G G+PL N + ++ ++ R+ +ST+G + + +E+ + Sbjct: 110 IAGPGDPLANPERTLETFRQLAEKA----PDIRLCVSTNGL--ALPDLVDELCQYNIEHV 163 Query: 240 AISLHAVSNDLRNILVPI----NRKYPLEMLIDACRHYPG------LSNARRITFEYVML 289 I+++ V D+ + P NR+ + ++ + V++ Sbjct: 164 TITINCVDPDVGAKIYPWIFWNNRRIKGRKAAEILIRRQQEGLEKLVARGVLVKVNSVLI 223 Query: 290 KGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCE 325 G+ND + +++K A + N++P P Sbjct: 224 PGVND--EHLKEVSRVVKAKGAFLHNVMPLIAEPEHG 258 >gi|150391562|ref|YP_001321611.1| glycyl-radical activating family protein [Alkaliphilus metalliredigens QYMF] gi|149951424|gb|ABR49952.1| glycyl-radical enzyme activating protein family [Alkaliphilus metalliredigens QYMF] Length = 315 Score = 38.3 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 24/156 (15%), Positives = 56/156 (35%), Gaps = 26/156 (16%) Query: 214 KRRITLSTSGFVP--NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 + TSG+V N+ ++ E + + L L ++++ Y + + D + Sbjct: 164 WIHTAIETSGYVNSENLLKLAENVDLFL-YDLKHINSEKH---YQWTGVYN-DRIFDNLK 218 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKIN-----LIPFNPWPGCEY 326 + +LKG+ND D L++ ++ N L+P++ +Y Sbjct: 219 ELLNR--KYNVKIRMPLLKGVNDRKEDIDKLMRFIEPYKNYENFKGIDLLPYHKLGVNKY 276 Query: 327 L-----------CS-DQKDIVTFSECIKRSGYSSPI 350 S +++D+ I++ + Sbjct: 277 RLLDKTYPIEGDPSLNKEDLKKIESWIEKYDLPVTV 312 >gi|291534130|emb|CBL07243.1| Arylsulfatase regulator (Fe-S oxidoreductase) [Megamonas hypermegale ART12/1] Length = 146 Score = 38.3 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 50/130 (38%), Gaps = 18/130 (13%) Query: 116 LCVSSQVGCSLTCSFCY--TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 +C+ C+L C +C+ TG R L +E+ G ++ ++ Sbjct: 1 MCLLVAEDCNLRCKYCFAGTGDMGHDRRLMTKEV---------------GKAAVDYIIAH 45 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233 S RK I G GEPL N VK + ++TL+T+G + N + Sbjct: 46 SGKRKHCEIDFFG-GEPLVNMPVVKYVTEYVRQKEKETGKVFKLTLTTNGVLLNDENIKW 104 Query: 234 EIGVMLAISL 243 +++ L Sbjct: 105 LNDNNISMVL 114 >gi|189500687|ref|YP_001960157.1| nitrogenase cofactor biosynthesis protein NifB [Chlorobium phaeobacteroides BS1] gi|189496128|gb|ACE04676.1| nitrogenase cofactor biosynthesis protein NifB [Chlorobium phaeobacteroides BS1] Length = 424 Score = 38.3 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 33/222 (14%), Positives = 80/222 (36%), Gaps = 39/222 (17%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C++C L N + +L ++ + S + I Sbjct: 30 CNIQCNYCNRKFDCLNEN-RPG-------VTSRVLSPHQALHYLDQALELSPNIAVVGI- 80 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVMLAI 241 G G+P N + +L + + + + ++++G +P I + E + + Sbjct: 81 -AGPGDPFANPEETMTTLRLVREKY----PEMLLCVASNGLNVLPYIEELAELKVSHVTL 135 Query: 242 SLHAVSNDLRNILVPINRKYP------------LEMLIDACRHYPGLSNARRITFEYVML 289 +++A+ ++ + R L+ ++A + L +++ Sbjct: 136 TINAIDPEIGAEIYAWVRHGKKVFRDVAGAELLLKNQLEALKKLKEL--GVTAKVNSIII 193 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 GIND + + + K + + A I FN G Y +++ Sbjct: 194 PGIND--KHVVEVAKAVSELGADI----FN---GLSYYRTEE 226 >gi|282600854|ref|ZP_05979919.2| tRNA-I(6)A37 thiotransferase enzyme MiaB [Subdoligranulum variabile DSM 15176] gi|282571154|gb|EFB76689.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Subdoligranulum variabile DSM 15176] Length = 447 Score = 38.3 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 34/212 (16%), Positives = 73/212 (34%), Gaps = 26/212 (12%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT-QKLVRNLTAEEILLQVLLARSLLGDF 161 +E + I S + GC C++C + R+ + IL + R L+ Sbjct: 144 VEEMPIRRDSGFRAWLPIMYGCDNFCTYCIVPYVRGRERSREPDAILAEF---RDLITKG 200 Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221 + G + S G+ + N + L N ++ +I T Sbjct: 201 YKEITLLGQNVNSYGKGLGNPIDFAD---LLNL---LCAV----------PGDYQIRFMT 244 Query: 222 SGFVPNIARVGEEI--GVMLAISLHAVSNDLRNILV-PINRKYPLEMLIDACRHYPGLSN 278 S ++ + I + +H N L+ +NR Y +E +D + Sbjct: 245 SHPKDASRKLIDTIAAQPHMCKHIHLPVQSGSNRLLQQMNRHYTVEQYLDLVDYARNKIP 304 Query: 279 ARRITFEYVMLKGI-NDSPRDALNLIKILKGI 309 +TF ++ G ++ D +++++ + Sbjct: 305 G--VTFSSDIIVGFPGETEEDFEATLELVRKV 334 >gi|168334526|ref|ZP_02692687.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Epulopiscium sp. 'N.t. morphotype B'] Length = 474 Score = 38.3 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 70/199 (35%), Gaps = 24/199 (12%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT-QKLVRNLTAEEILLQVLLARSLLGDF 161 +E + K + CV+ GC+ C++C + R+ ++I QV ++L+ D Sbjct: 167 VEDLPSIRKHQFKSCVNIMYGCNNFCTYCIVPYVRGRERSREVDDIYDQV---KALVDDG 223 Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221 + G + S G+ L L + GL +RI T Sbjct: 224 VKEIMLLGQNVNSYGKN------------LATKPTFTDLLERLASIDGL----KRIRFMT 267 Query: 222 SGFVPNIARVGEEI--GVMLAISLHAVSNDLRNILV-PINRKYPLEMLIDACRHYPGLSN 278 S ++ + I + LH ++ +NR Y E +D Sbjct: 268 SHPKDFSXQLIDSIAKHDNICKGLHLPIQSGSTRILQQMNRGYTREEYLDLVAKIKKAIP 327 Query: 279 ARRITFEYVM-LKGINDSP 296 + +T + ++ G +DS Sbjct: 328 SATLTTDIIVGFPGESDSD 346 >gi|304440394|ref|ZP_07400283.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371146|gb|EFM24763.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC BAA-1640] Length = 369 Score = 38.3 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 73/224 (32%), Gaps = 64/224 (28%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L C +C+ Q +E+ DF +E +P NI Sbjct: 17 CNLACKYCFVVQQ-------PKEMT---YKVAKDCADFYARNALEEKTVP-------NIT 59 Query: 184 MMGMGEPLCNFDN-VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV----GEEIGVM 238 G GEP+ +D+ VK + + G + ++T+G + + ++ ++G++ Sbjct: 60 FFG-GEPMLRYDDIVKPLVEYIRKTYG----DYHLDITTNGTLLDEEKLKFFKKNDVGIL 114 Query: 239 LAISLHAVSNDL----------------------------RNILVPINRKYPLEMLIDAC 270 L+I + DL R L P N +Y + I A Sbjct: 115 LSIDGDRKTQDLLRVKHDGSGSFDDVDVKTYLKYNPYGTFRATLDPRNVRYMFDNYIWAK 174 Query: 271 R-HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313 Y + + + + D L + L I I Sbjct: 175 DIGYKSCTMIINVFATW--------TEEDYRELARNLNKIMTYI 210 >gi|182417534|ref|ZP_02948861.1| pyruvate formate-lyase 2-activating enzyme [Clostridium butyricum 5521] gi|237665714|ref|ZP_04525702.1| glycyl-radical enzyme activating protein family [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378703|gb|EDT76230.1| pyruvate formate-lyase 2-activating enzyme [Clostridium butyricum 5521] gi|237658661|gb|EEP56213.1| glycyl-radical enzyme activating protein family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 298 Score = 38.3 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 22/122 (18%) Query: 214 KRRITLSTSGFVPN--IARVGEEIGVMLAISLHAVSND------LRNILVPINRKYPLEM 265 K + + T+G++ + ++ + ++L H SN + N L+ N K+ ++ Sbjct: 154 KLHVAIETTGYIKSEIFQKLASMLDLLLFDVKHYDSNQHYLGTNVHNELIIENLKWAIKN 213 Query: 266 LIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGC 324 I+ P ++ N S DA L K+L + AK + L+PF+ + Sbjct: 214 NIEVLPRIP-------------VIPDFNSSLDDAEGLSKLLIDVGAKRVQLLPFHQFGEK 260 Query: 325 EY 326 +Y Sbjct: 261 KY 262 >gi|209542310|ref|YP_002274539.1| molybdenum cofactor biosynthesis protein A [Gluconacetobacter diazotrophicus PAl 5] gi|209529987|gb|ACI49924.1| molybdenum cofactor biosynthesis protein A [Gluconacetobacter diazotrophicus PAl 5] Length = 338 Score = 38.3 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 42/213 (19%), Positives = 75/213 (35%), Gaps = 31/213 (14%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C +C + L EIL E++E + + ++ I Sbjct: 24 CDMRCVYCMSEAMSF---LPKAEILS--------------FEEMERLCAAFIRNGVTRIR 66 Query: 184 MMGMGEPL--CNFDNVKKSLSI---ASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238 + G GEPL + D +L +D G + +T + S + + Sbjct: 67 VTG-GEPLVRRDIDGFFAALGTWLHRTDGDG-HLDELTLTTNGSHLATHADALARAGVQR 124 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 + ISL ++ ++ + R+ LE ++ R + I V + G+ND D Sbjct: 125 VNISLDSLDSERFQRI---TRRGRLEQTLEGIR--AARAAGLAIRINTVAMAGVNDDEFD 179 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 L+ I A + LI P SD+ Sbjct: 180 T--LLAWCGEIGADLCLIETMPMGDTGEDRSDR 210 >gi|206576626|ref|YP_002237548.1| nitrogenase cofactor biosynthesis protein NifB [Klebsiella pneumoniae 342] gi|206565684|gb|ACI07460.1| nitrogenase cofactor biosynthesis protein NifB [Klebsiella pneumoniae 342] Length = 468 Score = 38.3 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 65/179 (36%), Gaps = 23/179 (12%) Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221 P ++ + ++S + + G G+PL N ++L + D ++ LST Sbjct: 82 PEQAVLKVRQVAQAIPQLSVVGIAGPGDPLANMTRTFRTLELVRD----QLPDLKLCLST 137 Query: 222 SG--FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPI----NRKYP--------LEMLI 267 +G + R+ E + ++++ + D+ + +Y + + Sbjct: 138 NGLMLPDAVERLLEVGVDHVTVTINTLDADIAGQIYAWLWLDGERYRGREAGEILIARQL 197 Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCE 325 + R + V++ GIND + + L+ A I N++P P Sbjct: 198 EGVRRLTAA--GVLVKINSVLIPGINDGG--MAEVGRRLRESGAFIHNIMPLIARPEHG 252 >gi|115525108|ref|YP_782019.1| pyruvate formate-lyase activating enzyme [Rhodopseudomonas palustris BisA53] gi|115519055|gb|ABJ07039.1| pyruvate formate-lyase activating enzyme [Rhodopseudomonas palustris BisA53] Length = 269 Score = 38.3 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 31/242 (12%), Positives = 65/242 (26%), Gaps = 40/242 (16%) Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC L C +C+ + + Sbjct: 54 AGCLLRCQYCHNPDS---------------WHMHQGKPTNSREVLRDIATYTNFIAHAHG 98 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 V + GEPL + ++ MGL L T+GF+ N ++ + Sbjct: 99 GVTLSGGEPLVQPE-FAHAILRGCKEMGL-----HTALDTAGFLGN---HADDYLLADVD 149 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALN 301 + L+ +D R LS + YV++ G+ D + Sbjct: 150 LVLLDIKAFSEETYHALTGVALQPTLDFARRLAALSK--PVWIRYVLVPGLTDKFDEIEG 207 Query: 302 LIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIKRSGYS 347 L + + +++++PF+ ++ + + + G Sbjct: 208 LAAFARELGNIERVDVLPFHKLGEFKWAEVGVPYQLAETEPPSDELLDRTRSVFRSHGLV 267 Query: 348 SP 349 Sbjct: 268 VT 269 >gi|322387090|ref|ZP_08060701.1| pyruvate formate-lyase activating enzyme [Streptococcus infantis ATCC 700779] gi|321142077|gb|EFX37571.1| pyruvate formate-lyase activating enzyme [Streptococcus infantis ATCC 700779] Length = 264 Score = 38.3 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 40/218 (18%), Positives = 76/218 (34%), Gaps = 43/218 (19%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + R T +++L + L R GD G Sbjct: 37 GCQMRCQYCHNPDTWAMETNKSRVRTVDDVLEEALRYRGFWGDKGG-------------- 82 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVG 232 I + G GE L D + +L + G+ TL T + + Sbjct: 83 ----ITVSG-GEALLQIDFLI-ALFTKAKEKGI-----HCTLDTCALPFRNKPRYLEKFN 131 Query: 233 EEIGVM-LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291 + + V L + N+ ++ +V I AC Y + + +V++ G Sbjct: 132 KLMAVTDLVLLDIKEINEAQHKIVTSQTN----KNILACAQYLS-DIGKPVWIRHVLVPG 186 Query: 292 INDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327 + D D + L K +K + K ++P++ ++ Sbjct: 187 LTDRDEDLIELGKFVKTLKNVDKFEILPYHTMGEFKWR 224 >gi|312623340|ref|YP_004024953.1| Radical SAM domain-containing protein [Caldicellulosiruptor kronotskyensis 2002] gi|312203807|gb|ADQ47134.1| Radical SAM domain protein [Caldicellulosiruptor kronotskyensis 2002] Length = 197 Score = 38.3 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 57/162 (35%), Gaps = 27/162 (16%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+ +C FC +RN L + L E ++ +K IV Sbjct: 20 CTNSCIFC-------IRNTEKG------LGSEYDLWLEKDPTPEEILLEIKDPQKYDEIV 66 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-----VGEEIGVM 238 G GEPL D V + + + + ++T+G I + + + Sbjct: 67 FCGYGEPLIRLDVVIEVAKKLKE-----ITSVPLRVNTNGHASYIHKKNVPQLLSNLIDR 121 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280 ++ISL+A + + N + R + E + D + S Sbjct: 122 ISISLNAPNKERYNEI---CRPFS-EDIYDYVIEFIKESKKY 159 >gi|219668765|ref|YP_002459200.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Desulfitobacterium hafniense DCB-2] gi|219539025|gb|ACL20764.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfitobacterium hafniense DCB-2] Length = 447 Score = 38.3 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 39/210 (18%), Positives = 75/210 (35%), Gaps = 25/210 (11%) Query: 104 ETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT-QKLVRNLTAEEILLQVLLARSLLGDFP 162 E+V + K + V+ GC+ C++C + R+ EEIL ++ R+L+ Sbjct: 142 ESVLLAAKGKLKAYVNISYGCNNFCTYCIVPHVRGRERSRQPEEILAEI---RALVETGC 198 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 + G + S G+ + D + D + R+ TS Sbjct: 199 REVTLLGQNVNSYGQDL---------------DRAYDFADLLKDVDSID-GLWRVRFMTS 242 Query: 223 GFVPNIARVGEEI--GVMLAISLHAVSNDLRNILVP-INRKYPLEMLIDACRHYPGLSNA 279 ++ E I G L +H + ++ +NRKY E + + Sbjct: 243 HPKDLSDKLIETIAAGTHLCEHIHLPFQAGSDEILKGMNRKYTREYYLSRIAQIKAIIPQ 302 Query: 280 RRITFEYVM-LKGINDSP-RDALNLIKILK 307 +T + ++ G + L LI+ +K Sbjct: 303 VSLTTDIIVGFPGETEEDFEQTLALIRQVK 332 >gi|170755341|ref|YP_001782853.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum B1 str. Okra] gi|169120553|gb|ACA44389.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum B1 str. Okra] Length = 232 Score = 38.3 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 36/242 (14%), Positives = 76/242 (31%), Gaps = 49/242 (20%) Query: 97 IGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARS 156 +G IET+ + + + V Q GC L C +C+ + Sbjct: 1 MGKIHSIETMGLVDGPGIRVVVFFQ-GCQLRCVYCHNPD---------------TWDFNA 44 Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKS--------LSIASDSM 208 + + + +++ I G GEPL + + K + D+ Sbjct: 45 GIEISSDEVLKKVLRYKPYFKQVGGITCSG-GEPLMQPEFLLKILKKCKNQGIHTLLDTS 103 Query: 209 GLSFSKRR-ITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267 G+ I + +I + EE + + N + ++ +N+K Sbjct: 104 GVGIGNYEEILQYVDLVILDIKHIEEEKYISICGKNMEEFNKFKRVVNKLNKK------- 156 Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCE 325 + +V++ GIND+ + K+ L+P++ + Sbjct: 157 --------------LWIRHVVVPGINDTAEHIYKFKDYINTFNNVEKVELLPYHTLGVSK 202 Query: 326 YL 327 Y Sbjct: 203 YE 204 >gi|290508666|ref|ZP_06548037.1| nitrogenase cofactor biosynthesis protein NifB [Klebsiella sp. 1_1_55] gi|289778060|gb|EFD86057.1| nitrogenase cofactor biosynthesis protein NifB [Klebsiella sp. 1_1_55] Length = 468 Score = 38.3 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 65/179 (36%), Gaps = 23/179 (12%) Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221 P ++ + ++S + + G G+PL N ++L + D ++ LST Sbjct: 82 PEQAVLKVRQVAQAIPQLSVVGIAGPGDPLANMTRTFRTLELVRD----QLPDLKLCLST 137 Query: 222 SG--FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPI----NRKYP--------LEMLI 267 +G + R+ E + ++++ + D+ + +Y + + Sbjct: 138 NGLMLPDAVDRLLEVGVDHVTVTINTLDADIAGQIYAWLWLDGERYRGREAGEILIARQL 197 Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCE 325 + R + V++ GIND + + L+ A I N++P P Sbjct: 198 EGVRRLTAA--GVLVKINSVLIPGINDGG--MAEVGRRLRESGAFIHNIMPLIARPEHG 252 >gi|288934464|ref|YP_003438523.1| nitrogenase cofactor biosynthesis protein NifB [Klebsiella variicola At-22] gi|255761117|gb|ACU32717.1| nitrogenase cofactor biosynthesis protein NifB [Klebsiella variicola At-22] Length = 468 Score = 38.3 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 65/179 (36%), Gaps = 23/179 (12%) Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221 P ++ + ++S + + G G+PL N ++L + D ++ LST Sbjct: 82 PEQAVLKVRQVAQAIPQLSVVGIAGPGDPLANMTRTFRTLELVRD----QLPDLKLCLST 137 Query: 222 SG--FVPNIARVGEEIGVMLAISLHAVSNDLRNILVPI----NRKYP--------LEMLI 267 +G + R+ E + ++++ + D+ + +Y + + Sbjct: 138 NGLMLPDAVDRLLEVGVDHVTVTINTLDADIAGQIYAWLWLDGERYRGREAGEILIARQL 197 Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCE 325 + R + V++ GIND + + L+ A I N++P P Sbjct: 198 EGVRRLTAA--GVLVKINSVLIPGINDGG--MAEVGRRLRESGAFIHNIMPLIARPEHG 252 >gi|297545376|ref|YP_003677678.1| Radical SAM domain-containing protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843151|gb|ADH61667.1| Radical SAM domain protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 453 Score = 38.3 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 40/243 (16%), Positives = 72/243 (29%), Gaps = 40/243 (16%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC++ C +CY RN + + + + + I I Sbjct: 77 GCNMNCPYCYIPES-YRRNY------------QKMSYNQLEEIIDKLSKWINERGGIKRI 123 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 + G GEPL + + + + TL T I + V +++S Sbjct: 124 IFHG-GEPLLAKEIFFPIIEKYYKEIEFGI-QTNGTLLTEEDAAFIKKH----NVHVSLS 177 Query: 243 LHAVSNDLRNILVPINRKY----PLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 L A ++ + L + I+ Y IT +N Sbjct: 178 LDAPLPEINDKLRYYQNGTGTFAHVRKTIEMFDDYEWQGVIVTIT-----KNNVNIIDTM 232 Query: 299 ALNLIKILKGIP-AKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIR----TP 353 A L G+ A N I + ++ S ++ I + + IR P Sbjct: 233 AEALYDW--GVRSALFNPISPSVSESTAFVPSIKELIDNYKKF-----IDVVIRLNTYQP 285 Query: 354 RGL 356 +G Sbjct: 286 KGR 288 >gi|291615956|ref|YP_003518698.1| YjeK [Pantoea ananatis LMG 20103] gi|291150986|gb|ADD75570.1| YjeK [Pantoea ananatis LMG 20103] Length = 342 Score = 38.3 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 70/224 (31%), Gaps = 57/224 (25%) Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY------TGTQKLVRNLTAEEI 147 + + K+R L V GC++ C +C+ Q RN A Sbjct: 92 DPLDEQNSVVPGLLHKYKNRALLLVKG--GCAVNCRYCFRRHFPYQDNQGNKRNWQAA-- 147 Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN----VKKSLSI 203 + + ++ I+ G G+PL D+ + +L Sbjct: 148 ----------------------LDYITAHPELDEIIFSG-GDPLMAKDHELAWLIDALGA 184 Query: 204 ASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPL 263 L R+ + +P R+ E + LA + R ++ + Sbjct: 185 IPHLKRLRI-HSRLPV----VIP--DRITEALCQTLA--------ETRLQVLMVTHINHA 229 Query: 264 EMLIDACRHYPGLSNARRITF--EYVMLKGINDSPRDALNLIKI 305 + +A +T + V+L+G+ND DA L + Sbjct: 230 REIDEALCDAMLRLKRADVTLLNQSVLLRGVND---DAQTLAAL 270 >gi|291523778|emb|CBK89365.1| pyruvate formate-lyase 1-activating enzyme [Eubacterium rectale DSM 17629] Length = 249 Score = 38.3 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 33/239 (13%), Positives = 76/239 (31%), Gaps = 41/239 (17%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC++ C +C+ N + E ++ + K + Sbjct: 30 GCNMRCKYCH--------NPDTWAKCGE----NDGAKLMTPQEVLKTAMRYKAYWKQTGG 77 Query: 183 VMMGMGEPLCNFDNVKKSLSIASD---SMGLSFSKRRITLSTSGFVPNIARVGEEIGVM- 238 + + GE L D V + +A + + L S T+ P + E + Sbjct: 78 ITVSGGEALLQIDFVTELFKLAKEKCVNTCLDTSGNPFTV----EEPFFGKFNELMKYTD 133 Query: 239 -LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 + + + ++ L K L+M Y N +++ +V++ GI R Sbjct: 134 LFMLDIKHIDDEEHKKLTGQTNKNILDMA-----QYLS-KNGKKMWIRHVLVPGITTDER 187 Query: 298 DALNLIKILKGIPA--KINLIPFNPWP-------GCEYL-----CSDQKDIVTFSECIK 342 L + + + ++ ++P++ G Y ++ I + + Sbjct: 188 YLKQLREFIDTLKTVDRVEVLPYHTLGVFKWKELGIPYQLEGVEPPTEEQIECAKKVLN 246 >gi|332830635|gb|EGK03241.1| nitrogenase cofactor biosynthesis protein NifB [Dysgonomonas gadei ATCC BAA-286] Length = 420 Score = 38.3 bits (88), Expect = 2.1, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 65/182 (35%), Gaps = 22/182 (12%) Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIG 236 IS + + G G+P N + +++ +A F LS++G P I + E Sbjct: 74 ISVVGIAGPGDPFANAEETLQTMRLAQKE----FPDLIFCLSSNGLDLAPYIDEIAEIGV 129 Query: 237 VMLAISLHAVSNDLRNILVPINRK----YPLEMLIDACRH---YPGLSNARR---ITFEY 286 + I++++++ + + R Y E Y + + Sbjct: 130 SHVTITVNSLNPETLAKIYRWVRYKRRVYRGEEGAKVLLEQQLYCIQKLKEKNITVKINT 189 Query: 287 VMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEY---LCSDQKDIVTFSECIK 342 V+ GIND +L K + + A +N IP P E+ ++ + I Sbjct: 190 VICPGINDHE--IEDLAKKVAELGADTMNCIPMYPTENTEFEILKEPSKEMMKDIKARIS 247 Query: 343 RS 344 + Sbjct: 248 KY 249 >gi|315226604|ref|ZP_07868392.1| pyruvate formate-lyase activating enzyme [Parascardovia denticolens DSM 10105] gi|315120736|gb|EFT83868.1| pyruvate formate-lyase activating enzyme [Parascardovia denticolens DSM 10105] Length = 304 Score = 38.3 bits (88), Expect = 2.1, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 69/204 (33%), Gaps = 35/204 (17%) Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC L C +C T + R + E ++ +V + L G G + + Sbjct: 89 GCPLRCQYCQNPDTWKMRDGRPVYLEAMIDKVARYKDLFQLTHGGITFSGGESMQQPKFV 148 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 + V ++ MG+ L TSGF+ + + L Sbjct: 149 TR---------------VFRAAK----EMGI-----HTCLDTSGFLGKNYSDRDIEDIDL 184 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 + ++ L+ ID + L +I +V++ G+ DS + Sbjct: 185 CLLDVKSGDE---ETYHKVTGGTLQPTIDFGKRLSKL--GSKIWIRFVLVPGLTDSVENV 239 Query: 300 LNLIKILKGIPA---KINLIPFNP 320 N+ +I + I+++PF+ Sbjct: 240 ENVARICEQFGNAVEHIDVLPFHQ 263 >gi|294786965|ref|ZP_06752219.1| pyruvate formate-lyase 1-activating enzyme [Parascardovia denticolens F0305] gi|294485798|gb|EFG33432.1| pyruvate formate-lyase 1-activating enzyme [Parascardovia denticolens F0305] Length = 299 Score = 38.3 bits (88), Expect = 2.1, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 69/204 (33%), Gaps = 35/204 (17%) Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 GC L C +C T + R + E ++ +V + L G G + + Sbjct: 84 GCPLRCQYCQNPDTWKMRDGRPVYLEAMIDKVARYKDLFQLTHGGITFSGGESMQQPKFV 143 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239 + V ++ MG+ L TSGF+ + + L Sbjct: 144 TR---------------VFRAAK----EMGI-----HTCLDTSGFLGKNYSDRDIEDIDL 179 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 + ++ L+ ID + L +I +V++ G+ DS + Sbjct: 180 CLLDVKSGDE---ETYHKVTGGTLQPTIDFGKRLSKL--GSKIWIRFVLVPGLTDSVENV 234 Query: 300 LNLIKILKGIPA---KINLIPFNP 320 N+ +I + I+++PF+ Sbjct: 235 ENVARICEQFGNAVEHIDVLPFHQ 258 >gi|327396208|dbj|BAK13630.1| lysine 2 3-aminomutase YjeK [Pantoea ananatis AJ13355] Length = 342 Score = 38.3 bits (88), Expect = 2.1, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 70/224 (31%), Gaps = 57/224 (25%) Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY------TGTQKLVRNLTAEEI 147 + + K+R L V GC++ C +C+ Q RN A Sbjct: 92 DPLDEQNSVVPGLLHKYKNRALLLVKG--GCAVNCRYCFRRHFPYQDNQGNKRNWQAA-- 147 Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN----VKKSLSI 203 + + ++ I+ G G+PL D+ + +L Sbjct: 148 ----------------------LDYIAAHPELDEIIFSG-GDPLMAKDHELAWLIDALGA 184 Query: 204 ASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPL 263 L R+ + +P R+ E + LA + R ++ + Sbjct: 185 IPHLKRLRI-HSRLPV----VIP--DRITEALCQTLA--------ETRLQVLMVTHINHA 229 Query: 264 EMLIDACRHYPGLSNARRITF--EYVMLKGINDSPRDALNLIKI 305 + +A +T + V+L+G+ND DA L + Sbjct: 230 REIDEALCDAMLRLKRADVTLLNQSVLLRGVND---DAQTLAAL 270 >gi|195874404|ref|ZP_02701807.2| DarA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195628955|gb|EDX48357.1| DarA [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 613 Score = 38.3 bits (88), Expect = 2.1, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 3/79 (3%) Query: 12 MMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGM-SDISQEVRHLLNQHFSI 70 + E++ LK+ + + + R + M + ++ + L +F Sbjct: 427 LSDEQMRNFDLKLLPRDESFDFLAKTLASGPFGKYARQYLEMATSAPKDFQSTLKMNFQK 486 Query: 71 IYPEIVDEKISCDGTRKWL 89 +P I DGT K + Sbjct: 487 TFPNIAYPL--GDGTEKLV 503 >gi|147919729|ref|YP_686525.1| putative 2-methylthioadenine synthetase [uncultured methanogenic archaeon RC-I] gi|110621921|emb|CAJ37199.1| putative 2-methylthioadenine synthetase [uncultured methanogenic archaeon RC-I] Length = 404 Score = 38.3 bits (88), Expect = 2.1, Method: Composition-based stats. Identities = 33/260 (12%), Positives = 81/260 (31%), Gaps = 32/260 (12%) Query: 100 PVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT-QKLVRNLTAEEILLQVLLARSLL 158 + E + T + GC+ CS+C + +R+ A +I+ AR + Sbjct: 103 GLRPEAGLSIAMTGRTATIKIAEGCNGQCSYCIVRLVRGRIRSTPAPDIVE---AARRAI 159 Query: 159 GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRIT 218 + + + G + G+ P + +S++ + + Sbjct: 160 AEGASELFLTSQDSGAYG------LDTGVRLP-----TLIRSIASLPGNFKVRIGMMN-P 207 Query: 219 LSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRK-YPLEMLIDACRHYPGLS 277 S + +P++ V V H + ++ + ++ Y + Sbjct: 208 FSIADILPDMVDVLNHPKVYRFA--HIPVQSGSDRILKLMQRPYTEQEYSAIISRLRAGV 265 Query: 278 NARRITFEYVMLKGINDSPRDALN-LIKILKGIPAKINLIPFNPWPGCE-------YLCS 329 + +Y++ ++ D L + P K+N+ F+P PG + Sbjct: 266 PGITFSTDYIV-GFPTETEADFRLTLEDLRTNRPLKVNITRFSPRPGTPAAAMPDVLERT 324 Query: 330 DQKDIVTFSECIKRSGYSSP 349 ++ S + + Sbjct: 325 KKER----SRMLTALHHEVT 340 >gi|309798990|ref|ZP_07693247.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus infantis SK1302] gi|308117394|gb|EFO54813.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus infantis SK1302] Length = 264 Score = 38.3 bits (88), Expect = 2.1, Method: Composition-based stats. Identities = 40/218 (18%), Positives = 76/218 (34%), Gaps = 43/218 (19%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + R T +++L + L R GD G Sbjct: 37 GCQMRCQYCHNPDTWAMETNKSRVRTVDDVLEEALRYRGFWGDKGG-------------- 82 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVG 232 I + G GE L D + +L + G+ TL T + + Sbjct: 83 ----ITVSG-GEALLQIDFLI-ALFTKAKEKGI-----HCTLDTCALPFRNKPRYLEKFN 131 Query: 233 EEIGVM-LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKG 291 + + V L + N+ ++ +V I AC Y + + +V++ G Sbjct: 132 KLMAVTDLVLLDIKEINEAQHKIVTSQTN----KNILACAQYLS-DIGKPVWIRHVLVPG 186 Query: 292 INDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327 + D D + L K +K + K ++P++ ++ Sbjct: 187 LTDRDEDLIELGKFVKTLKNVDKFEILPYHTMGEFKWR 224 >gi|298507087|gb|ADI85810.1| radical SAM domain iron-sulfur cluster-binding oxidoreductase [Geobacter sulfurreducens KN400] Length = 293 Score = 38.3 bits (88), Expect = 2.1, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 71/210 (33%), Gaps = 23/210 (10%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLT-CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF 161 IE V+ P +L +GCS C+FC K R E++ ++ + Sbjct: 5 IEPVFRPPSEARSLIFQITIGCSQNHCAFCGMYKMKRFRLKPESEVMTEIDGIPARYRPA 64 Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221 + ++ + N V G S R + T Sbjct: 65 VDRVFLADGDALVYPFDGLAAILDRLAAVFPNLTRV-----------GSYASPRSL---T 110 Query: 222 SGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLI-DACRHYPGLSNAR 280 + V + ++ E+ +L L + + L +N+ + E ++ +AC+ Sbjct: 111 TKSVDELRQLREKKLRILYFGLESGDDAT---LAAVNKGFTAEEMVWEACK---AREAGM 164 Query: 281 RITFEYVM-LKGINDSPRDALNLIKILKGI 309 +++ ++ L G + S A + + + Sbjct: 165 KLSVTAILGLAGRSRSLEHARATAEWVNRV 194 >gi|256395639|ref|YP_003117203.1| radical SAM domain-containing protein [Catenulispora acidiphila DSM 44928] gi|256361865|gb|ACU75362.1| Radical SAM domain protein [Catenulispora acidiphila DSM 44928] Length = 418 Score = 38.3 bits (88), Expect = 2.1, Method: Composition-based stats. Identities = 27/196 (13%), Positives = 58/196 (29%), Gaps = 32/196 (16%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI- 182 C+L C +C E+ Q + + E + + + Sbjct: 48 CNLACDYC-----------YMYEMADQSWRGKPVAMTRATVEATAARITEHLEAHRDEVS 96 Query: 183 ----------VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIA 229 ++ E L V ++ G+S ++TL+T+G + I Sbjct: 97 EAVISLHGGEALLAGAEGLDYAAGVFRAA----VPDGVS---AQLTLTTNGVLLTDERIL 149 Query: 230 RVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 RV E+ + + +SL N + + ++ + R+ ++ Sbjct: 150 RVLEQHDIAVTLSLDGAREAQDRHRKYANGRGSYDAVMAGAAALRAHTAPERLRNVLCVI 209 Query: 290 KGINDSPRDALNLIKI 305 ND L + Sbjct: 210 DVANDPLETYAELAAL 225 >gi|12657477|emb|CAC27790.1| NifB2 protein [Paenibacillus durus] Length = 458 Score = 38.3 bits (88), Expect = 2.1, Method: Composition-based stats. Identities = 41/246 (16%), Positives = 87/246 (35%), Gaps = 46/246 (18%) Query: 124 CSLTCSFCYTGTQKLVR-----NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 C++ C++C R N + ++ +VL P + + + + + Sbjct: 42 CNIQCNYC-------NRKFDCVNESRPGVVSEVLT--------PEQAERKVKGVAAQLMQ 86 Query: 179 ISNIVMMGMGEPLCNFDNVKK-SLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEI 235 +S + + G G+PL N D + LST+G +I R+ E Sbjct: 87 LSVVGIAGPGDPLANADKTFDTFARVKKH-----VPDVITCLSTNGLTLYRHIDRIVELG 141 Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLE-MLIDACRHYPGL---------SNARRITFE 285 + I+++A+ D+ + P + +A + Sbjct: 142 IGHVTITINAIDPDVGKEIYPWVSDEGVRYEGREAAALLISRQLQGVEELAKRGILVKVN 201 Query: 286 YVMLKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEY-----LCSDQKDIVTFSE 339 +++ GIND + + + K +K + A + N+ P PG +Y +++ E Sbjct: 202 SILIPGIND--KHLVEVSKKVKELGATLHNVTPLIIAPGSQYEKDGRKAPRPRELNQLQE 259 Query: 340 CIKRSG 345 + G Sbjct: 260 QLSEGG 265 >gi|292669432|ref|ZP_06602858.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] gi|292648885|gb|EFF66857.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] Length = 342 Score = 38.3 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 6/86 (6%) Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167 IP + T+ + C+ C +C T R+ E + L R D E I Sbjct: 19 IPLAAPFTVYIEQTKYCNFKCFYCIHST----RDEAGGEF--RALGHREQHMDEAFFEKI 72 Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCN 193 + I IV G+GEPL N Sbjct: 73 IRELKEFPHDGIKRIVFSGLGEPLMN 98 >gi|319938823|ref|ZP_08013187.1| pyruvate formate-lyase 3 [Streptococcus anginosus 1_2_62CV] gi|319811873|gb|EFW08139.1| pyruvate formate-lyase 3 [Streptococcus anginosus 1_2_62CV] Length = 258 Score = 38.3 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 73/234 (31%), Gaps = 69/234 (29%) Query: 123 GCSLTCSFCY-------------------TGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163 GC L C +C T T + + EEI+ +VL R + G Sbjct: 30 GCPLRCPWCANPESQKFKPEPMLDASSKKTITMGEEK--SVEEIIKEVLKDREFYEESGG 87 Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG 223 + G I + K++ A+ G+ + T+ Sbjct: 88 GLTLSGGEIFAQFE-------------------FAKAILKAAKEKGI-----HTAIETTA 123 Query: 224 FVPNIARVGEEIGV--MLAISL-------HAVSNDLRNILVPINRKYPLEMLIDACRHYP 274 FV + + + + + L H ++N L+ N Y Sbjct: 124 FVDH-NKFVDLLQYVDFIYTDLKHYNTINHRKVTGVKNELIIKNIHY------------- 169 Query: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEYL 327 S + I ++ NDS DA + K + ++ L+PF+ + +Y Sbjct: 170 AFSQQKTIVLRIPVIPSFNDSLEDAEQFAILFKKLSIDQVQLLPFHQFGENKYK 223 >gi|261254094|ref|ZP_05946667.1| lysine 2,3-aminomutase [Vibrio orientalis CIP 102891] gi|260937485|gb|EEX93474.1| lysine 2,3-aminomutase [Vibrio orientalis CIP 102891] Length = 340 Score = 38.3 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 32/213 (15%), Positives = 66/213 (30%), Gaps = 46/213 (21%) Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153 I + +R + V GC++ C +C R+ +E Sbjct: 92 DPLEEQNNSIPGLLHKYHNRALMIVKG--GCAINCRYC------FRRHFPYDE------- 136 Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213 + + +I +++ G G+PL + L++ Sbjct: 137 -----NKSSKSVWQQSLDYIQQHPEIDEVILSG-GDPL------------MAKDEELNW- 177 Query: 214 KRRITLSTSGFVPNIARVGEE------IGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267 ++ +P+I R+ I + +L + + R + + + + Sbjct: 178 ----LVNHIADIPHIKRLRIHSRLPVVIPARITPALANLLENTRLQTILVTHINHAQEIH 233 Query: 268 DACRHYPGLSNARRITF--EYVMLKGINDSPRD 298 R +T + VMLKG+NDS D Sbjct: 234 QELRDSLTTLKRAGVTLLNQGVMLKGVNDSIDD 266 >gi|322419288|ref|YP_004198511.1| lysine 2,3-aminomutase YodO family protein [Geobacter sp. M18] gi|320125675|gb|ADW13235.1| lysine 2,3-aminomutase YodO family protein [Geobacter sp. M18] Length = 343 Score = 38.3 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 34/211 (16%), Positives = 65/211 (30%), Gaps = 42/211 (19%) Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166 R VS+ C++ C FC + R + Sbjct: 88 IHRYPDRVVFLVSTA--CAVYCRFC--------------------MRKRGVGCQGMSPAP 125 Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLC----NFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 ++ V + V++ G+PL D + +L + R+ ++ Sbjct: 126 VDQSVAYIASKPQIRDVILSGGDPLLLSDDRLDGILTALRRIPHVEIIRIGT-RVPVT-- 182 Query: 223 GFVPNI-ARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281 I ++ + + L+ N R I E AC + Sbjct: 183 -LPERITVKLARLLKRHQPLYLNTHFNHPREI---------TEQSARACARLADA--GIQ 230 Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAK 312 + + V+LKG+ND P+ L++ L I + Sbjct: 231 LGNQSVLLKGVNDDPQVMRELMQRLLAIRVR 261 >gi|330506877|ref|YP_004383305.1| radical SAM domain-containing protein [Methanosaeta concilii GP-6] gi|328927685|gb|AEB67487.1| radical SAM domain protein [Methanosaeta concilii GP-6] Length = 364 Score = 38.3 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 59/147 (40%), Gaps = 25/147 (17%) Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167 +PE+S G L +S C+L CS+CY R + +G I Sbjct: 1 MPEESPGLLALSVTSDCNLRCSYCY-AHGGESR---------------ASMGWVTARRAI 44 Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227 + M G KI G GEPL N +++++ D MGL + T +T Sbjct: 45 DVMAECFDGFKIQ---FTG-GEPLLNLGLIERAVDYL-DEMGLQVPCQVQTNATLITSDV 99 Query: 228 IARVGEEIGVMLAISLHAV---SNDLR 251 R+ + + + + +SL ++ +R Sbjct: 100 AGRLND-LKIGIGVSLDGPPSVNDRIR 125 >gi|222102846|ref|YP_002539885.1| Biotin synthase-related enzyme [Agrobacterium vitis S4] gi|221739447|gb|ACM40180.1| Biotin synthase-related enzyme [Agrobacterium vitis S4] Length = 323 Score = 38.3 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 56/141 (39%), Gaps = 16/141 (11%) Query: 230 RVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 R+ + L + L V+ ++R ++P + +E + + + + +++ Y ML Sbjct: 175 RMKDAGVDALGMHLEVVTPEIRARIMPGKAQVGIEKYMASFKAAVEVFGRGQVS-TY-ML 232 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVT----FSECIK 342 G+ D+ L++ + L I ++PF P G + + S+ + Sbjct: 233 AGLGDTREAILDICERLVAIGVYPFVVPFVPISGTPLESHPAPKPDFMHSILGPLSKMLV 292 Query: 343 RSGYSSPIRTPRGLDILAACG 363 SG + DI A CG Sbjct: 293 ESGLKAV-------DIKAGCG 306 >gi|24213374|ref|NP_710855.1| oxidoreductase [Leptospira interrogans serovar Lai str. 56601] gi|45658752|ref|YP_002838.1| hypothetical protein LIC12923 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24194126|gb|AAN47873.1| oxidoreductase [Leptospira interrogans serovar Lai str. 56601] gi|45601996|gb|AAS71475.1| conserved hypothetical protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 514 Score = 38.3 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 60/185 (32%), Gaps = 33/185 (17%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L+CSFC R + + + P + + Sbjct: 241 GCDLSCSFCP-------RQFNSND--------QDGKFLSPEFLESLLRQQEESFSNEYTV 285 Query: 183 VMMGMGEPLC--NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVP--------NIARVG 232 G+GEPL NF + L+ S L + + + T+ + NI Sbjct: 286 CFGGLGEPLLHPNFKELI--LTALKSSSHL---MQELMIETAFYTDPNIILDFLNILDFA 340 Query: 233 EEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI 292 + + I+L + + L N+ LE ++ + + RI +++ ++ Sbjct: 341 HKEKITWIINLTTRNPEKYATLYGKNK---LEKVLSNIKELEKVFPKNRIYLQFLKIQEA 397 Query: 293 NDSPR 297 D Sbjct: 398 EDEVE 402 >gi|288932099|ref|YP_003436159.1| radical SAM protein [Ferroglobus placidus DSM 10642] gi|288894347|gb|ADC65884.1| Radical SAM domain protein [Ferroglobus placidus DSM 10642] Length = 288 Score = 38.3 bits (88), Expect = 2.3, Method: Composition-based stats. Identities = 36/208 (17%), Positives = 70/208 (33%), Gaps = 22/208 (10%) Query: 107 YIPEKSRGTLCVSSQVGCSLT-CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCE 165 + P ++ + + +GCS C+FC + K R + EEI +L+ + D Sbjct: 8 FRPPSEAKSVILQATIGCSHNKCTFCGSYKMKKFREKSLEEIWRDLLILKEFYPDAKRMF 67 Query: 166 DIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225 +G K+ I+ M V +L S + Sbjct: 68 IADGNAFCMSTEKLLKIISMA--------KKVFPNLER--------ISIYATPMDILAKS 111 Query: 226 PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFE 285 + E G+ L +D+ +L + + + ++ A R + N ++ Sbjct: 112 DEEISLLAESGLRLIYLGIESGDDV--VLKEVKKGATSKEILKAGRK--AIENGVTLSVT 167 Query: 286 YVM-LKGINDSPRDALNLIKILKGIPAK 312 ++ L G S A N K+L + Sbjct: 168 AILGLGGRKRSEEHAENTAKLLNEMKPH 195 >gi|39998150|ref|NP_954101.1| radical SAM domain-containing protein [Geobacter sulfurreducens PCA] gi|39985096|gb|AAR36451.1| radical SAM domain protein [Geobacter sulfurreducens PCA] Length = 293 Score = 38.3 bits (88), Expect = 2.3, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 63/208 (30%), Gaps = 19/208 (9%) Query: 103 IETVYIPEKSRGTLCVSSQVGCSLT-CSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF 161 IE V+ P +L +GCS C FC K R E++ ++ + Sbjct: 5 IEPVFRPPSEARSLIFQITIGCSQNHCVFCGMYKMKRFRLKPEAEVMAEIDGIPARYRPA 64 Query: 162 PGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLST 221 + ++ + N V G S R + T Sbjct: 65 VDRVFLADGDALVYPFDGLAAILDRLAAVFPNLTRV-----------GSYASPRSL---T 110 Query: 222 SGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281 + V + + E+ +L L + + L +N+ + E ++ Sbjct: 111 TKNVEELRHLREKKLRILYFGLESGDDAT---LAAVNKGFTAEEMVREACKAREAGMKLS 167 Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGI 309 +T + L G + S A + + + Sbjct: 168 VT-AILGLAGRSRSLEHARATAEWVNRV 194 >gi|153009561|ref|YP_001370776.1| molybdenum cofactor biosynthesis protein A [Ochrobactrum anthropi ATCC 49188] gi|151561449|gb|ABS14947.1| molybdenum cofactor biosynthesis protein A [Ochrobactrum anthropi ATCC 49188] Length = 345 Score = 37.9 bits (87), Expect = 2.3, Method: Composition-based stats. Identities = 39/214 (18%), Positives = 75/214 (35%), Gaps = 37/214 (17%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C C++C + D E+++ + + + + + Sbjct: 36 CDFRCTYCMAEHMTFLP-----------------KKDLLTLEELDRLCTAFIDKGVRKLR 78 Query: 184 MMGMGEPLC--NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG----V 237 + G GEPL N ++ + LS S L +TL+T+G ++R +E+ Sbjct: 79 LTG-GEPLVRKNIMHLIRQLSRHLKSGAL----DELTLTTNG--SQLSRFADELAECGIR 131 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 + +SL + + + + L +++ R+ V LK ND Sbjct: 132 RINVSLDTLDPEKFHQITRWG---DLPRVLEGIE--AAQRAGIRVKINAVALKDFNDHE- 185 Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 LI+ G + LI P E+ +DQ Sbjct: 186 -IPELIRWAHGRGMDMTLIETMPMGEIEFDRTDQ 218 >gi|320352619|ref|YP_004193958.1| Radical SAM domain-containing protein [Desulfobulbus propionicus DSM 2032] gi|320121121|gb|ADW16667.1| Radical SAM domain protein [Desulfobulbus propionicus DSM 2032] Length = 332 Score = 37.9 bits (87), Expect = 2.3, Method: Composition-based stats. Identities = 40/238 (16%), Positives = 79/238 (33%), Gaps = 47/238 (19%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI- 182 C+L C +C G TA V + + P E + + R+++ + Sbjct: 27 CNLNCIYCEVGK-------TA------VPVGQRGTYADPAGIAAEIDAVCADSRRMAEVD 73 Query: 183 --VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 + GEP + GL R I T+ V + + Sbjct: 74 VLTVTAKGEP--------------TLERGLGGILRHIKQKTTKPVAVLTNGTTLTDPEVQ 119 Query: 241 ISLHAVS------NDLRNILVPINRK----YPLEMLIDACRHYPGLSNARRITFEYVMLK 290 L A + R + L+ +I + ++ E ++++ Sbjct: 120 RDLMAADLVIPSLDAAREDSFRRVDRPIDGLALDAVIAGLTSFSHAYPG-KLWLEILLVR 178 Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPW---PGCEYLCS-DQKDIVTFSECIKRS 344 G+ND P D LI+ L+ P +I+ I N P ++ + + T + + ++ Sbjct: 179 GVNDRPEDIEALIEALR--PMRIDRIQLNTVVRPPAEQFALPVSSERLTTVARALHQA 234 >gi|262039026|ref|ZP_06012360.1| pyruvate formate-lyase 2-activating enzyme [Leptotrichia goodfellowii F0264] gi|261746936|gb|EEY34441.1| pyruvate formate-lyase 2-activating enzyme [Leptotrichia goodfellowii F0264] Length = 265 Score = 37.9 bits (87), Expect = 2.3, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 73/227 (32%), Gaps = 48/227 (21%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C +C N ++I +V + G ++ +I +I Sbjct: 30 GCPLRCKWCS--------NPETQKIENEVFYNEKEISPITGEYPKVAKLM--TLNEIFDI 79 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 VM K + G++ S I ++ + ++ EE + Sbjct: 80 VMKDE-----------KFYR--NSGGGVTLSGGEILVNVEFAIKLFEKLKEEYINTAIET 126 Query: 243 LHAVSNDLRNILVPINRK--YPLEMLIDAC-RHYPGLSN-------------ARRITFEY 286 + L + + ++ + + Y +SN + I + Sbjct: 127 TGYGNYKEFENLAKLTDTVLFDIKHMNSQKHKEYTAVSNELILENLEKLSKWHKNIIMRF 186 Query: 287 VMLKGINDSPRDALNLIKILKGIPAKINLI-----PFNPWPGCEYLC 328 ++KG+ND + K LK KINLI P++ +Y Sbjct: 187 PLIKGVNDDDVNVEETAKFLK----KINLIDVDVLPYHTMGVEKYRK 229 >gi|302874950|ref|YP_003843583.1| Radical SAM domain-containing protein [Clostridium cellulovorans 743B] gi|307690432|ref|ZP_07632878.1| Radical SAM domain-containing protein [Clostridium cellulovorans 743B] gi|302577807|gb|ADL51819.1| Radical SAM domain protein [Clostridium cellulovorans 743B] Length = 454 Score = 37.9 bits (87), Expect = 2.3, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 66/200 (33%), Gaps = 21/200 (10%) Query: 110 EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169 E LC++ C+L C +C+ + + I + +E Sbjct: 91 EDYVKALCLNIIHDCNLRCKYCFADEGEYHGHKGKMSI-------------DTAKKALEY 137 Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSI---ASDSMGLSFSKRRITLSTSGFVP 226 ++ S RK + + G GEPL D +K+ + ++ + T ST Sbjct: 138 VIKRSGPRKNIEVDLFG-GEPLMAMDVIKEVVQYGKELGENHKKNIRFTMTTNSTLLTPE 196 Query: 227 NIARV-GEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSN-ARRITF 284 + + E ++L+I ND + Y E ++ ++ ++ Sbjct: 197 VVDFLDKEMGNIILSIDGRKEINDQVRVRADGTGSY--EKILPQIKNMISKRTIGKQYYV 254 Query: 285 EYVMLKGINDSPRDALNLIK 304 K D D + L+ Sbjct: 255 RGTFTKKNPDFFNDIMALVN 274 >gi|210630155|ref|ZP_03296270.1| hypothetical protein COLSTE_00154 [Collinsella stercoris DSM 13279] gi|210160628|gb|EEA91599.1| hypothetical protein COLSTE_00154 [Collinsella stercoris DSM 13279] Length = 342 Score = 37.9 bits (87), Expect = 2.3, Method: Composition-based stats. Identities = 37/191 (19%), Positives = 71/191 (37%), Gaps = 20/191 (10%) Query: 147 ILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNV--KKSLSIA 204 + Q + AR+ G+ E+I V I+ + + G GEPL + V + + Sbjct: 1 MPEQGVPARAH-GELLTAEEIAHFVRLVAKEGITRVRLTG-GEPLVSHRIVPLIEEIRAI 58 Query: 205 SDSMGLSFSKRRITLSTSG-FVPNIA-RVGEEIGVMLAISLHAVSNDLRNILVPINRKYP 262 I+L+T+G +P +A + + + ISL ++ + + + R Sbjct: 59 P-------GIEDISLTTNGALLPRLAPALRDAGLNRVNISLDTLNPERFAQITRLGRVEQ 111 Query: 263 LEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWP 322 IDA Y + V+++ + +D L L ++ P + I + P Sbjct: 112 ALAGIDAALEY----GFEPVKVNTVVVRRM---RQDVLELARLSLNRPVHVRFIEYMPIG 164 Query: 323 GCEYLCSDQKD 333 SD Sbjct: 165 SSAQKASDGAQ 175 >gi|152986331|ref|YP_001349180.1| molybdenum cofactor biosynthesis protein A [Pseudomonas aeruginosa PA7] gi|150961489|gb|ABR83514.1| molybdenum cofactor biosynthesis protein A [Pseudomonas aeruginosa PA7] Length = 331 Score = 37.9 bits (87), Expect = 2.4, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 60/174 (34%), Gaps = 27/174 (15%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C C++C + + + QVL L + +G + I Sbjct: 25 CDFRCTYCMSEDMQFLPR-------DQVLSLEELY----------AVADAFIGLGVRRIR 67 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 + G GEPL V+K ++ +G + ++T+G + E+ L Sbjct: 68 ITG-GEPL-----VRKGIAGLLARLGQRPELEDLAITTNG--SQLRERAGELKAAGVRRL 119 Query: 244 HAVSNDLRNILV-PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 + + LR R LE ++D + + RI V+ KG ND Sbjct: 120 NVSLDSLRRERFAAFTRSDRLEQVLDGIQA-AREAGFERIKLNCVVQKGRNDDE 172 >gi|293401093|ref|ZP_06645237.1| pyruvate formate-lyase 1-activating enzyme [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305219|gb|EFE46464.1| pyruvate formate-lyase 1-activating enzyme [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 256 Score = 37.9 bits (87), Expect = 2.5, Method: Composition-based stats. Identities = 32/236 (13%), Positives = 74/236 (31%), Gaps = 52/236 (22%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C FC+ N +I+ G + + + K S Sbjct: 35 GCRMRCQFCH--------NADTWKIME---------GSETAEDVLRKALRYKPYWKHSGG 77 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEEIGV 237 + + GEPL D + + +A + T G P ++ E + Sbjct: 78 ITVSGGEPLLQIDFLLELFKLAKQK------GVHTVIDTCGNPFTREEPFFSKFQELMQY 131 Query: 238 M--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 + + + ++ L + ++D R+ + + +V++ +D Sbjct: 132 TDLVMLDIKHINQAKHQQLTGWGN----DNILDMARYLSSIDK--PVWIRHVLVPQRSDD 185 Query: 296 PRDALNL---IKILKGIPAKINLIPFNPWPGCEYL------------CSDQKDIVT 336 D L +K L + + ++P++ ++ D++ I Sbjct: 186 EEDLKCLDAFVKTLHNVK-RFEVLPYHTLGAYKWKELGMEYPLEGIEPPDKETIER 240 >gi|254294676|ref|YP_003060699.1| glycosyl transferase family 2 [Hirschia baltica ATCC 49814] gi|254043207|gb|ACT60002.1| glycosyl transferase family 2 [Hirschia baltica ATCC 49814] Length = 748 Score = 37.9 bits (87), Expect = 2.5, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 71/187 (37%), Gaps = 30/187 (16%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C++C Q + + ++ S + V Sbjct: 426 CNMRCTYCSPTYYG-----------GQ-------EASYSTPNILANLLEQSDNLSSNCHV 467 Query: 184 MMGMGEPLC--NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 + G GEP NF V +L A++++G K R+ ++ + ++ E L Sbjct: 468 VWGGGEPTLSPNFKPV-NALLSANENVG----KIRVLSNSLKYSKSLVEYLEHDKFHLVT 522 Query: 242 SLHAVSNDLRNILVPINRKYPLEMLIDACRHYP-GLSNARRITFEYVMLKGINDSPRDAL 300 S+ A + D+ + + ++ +++ + Y LSN R+T +Y++ N + Sbjct: 523 SIDAGTQDMFAQIRGRGK---MQSVLENLQKYKTALSNKNRLTIKYILTPE-NLGTEELQ 578 Query: 301 NLIKILK 307 + LK Sbjct: 579 AYVDQLK 585 >gi|91201046|emb|CAJ74104.1| similar to moaA/nirJ/ppqE family of cofactor synthesis proteins [Candidatus Kuenenia stuttgartiensis] Length = 350 Score = 37.9 bits (87), Expect = 2.5, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 56/140 (40%), Gaps = 28/140 (20%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L C +CY+ A E + E+++ +V + G I+ Sbjct: 38 CNLRCLYCYSSA-GF-----AAE-------------NELSLEEMKSVVDQAKGLGAKKII 78 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLAI 241 ++G GEPL ++ V + + ++I T+G + IA+ V + I Sbjct: 79 LLGGGEPLL-YEGVVDIIKYINS-----IGLQQILF-TNGVLIDKEIAQTLYRNKVSVVI 131 Query: 242 SLHAVSNDLRNILVPINRKY 261 ++ + +++++L Y Sbjct: 132 KYNSFNPEVQDMLANAKGTY 151 >gi|303240613|ref|ZP_07327128.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2] gi|302591850|gb|EFL61583.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2] Length = 297 Score = 37.9 bits (87), Expect = 2.5, Method: Composition-based stats. Identities = 40/264 (15%), Positives = 76/264 (28%), Gaps = 45/264 (17%) Query: 110 EKSRGTLCVSSQVGCSLTCSFC-----------YTGTQKLVRNLTAEEILLQVLLARSLL 158 + T C + C C K V N + LA +L Sbjct: 48 FREYCTGCGKCRAVCKAGCFIVNGENHYFNETNCVRCGKCVLNCSHG------ALAYNLR 101 Query: 159 GDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRIT 218 P E + R I I + G GEP+ + ++ + G+ Sbjct: 102 EGTPEEIFKEIKAELILLRNIGGITLSG-GEPMLQY---LEAKELLKLCKGMG---AHTA 154 Query: 219 LSTSGFV--PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276 + TSG V + E + + ++ + + +E ++ Sbjct: 155 IETSGAVNIKCFEELLEYVDC--WLFGLKQTDAEKCCAMTGADFNNIEQNLNFLASLVP- 211 Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKI-LKGIPAKINLIPFNPWPGCEYLC------- 328 +I +++G D + + +I L I L+P+NP G Y Sbjct: 212 ---DKIIIRTPIIEGFTDDIYNIQRIYEIMLSHSLNTIELLPYNPHTGHYYKAMGKDFDE 268 Query: 329 -----SDQKDIVTFSECIKRSGYS 347 + + +K G + Sbjct: 269 QKFKLPSEDILKNIVNILKLKGIN 292 >gi|114650303|ref|XP_509696.2| PREDICTED: glypican-5 [Pan troglodytes] Length = 572 Score = 37.9 bits (87), Expect = 2.5, Method: Composition-based stats. Identities = 52/331 (15%), Positives = 96/331 (29%), Gaps = 66/331 (19%) Query: 63 LLNQHFSIIYPEIVDE--KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 + + + I + + + + S T K+L+ A +E I + T + Sbjct: 72 KMEERYQIAARQDMQQFLQTSS-STLKFLISRNAAAFQETLET---LIKQAENYTSILFC 127 Query: 121 QVGCSLTCSFCYTGTQKLV--------RNLTAEEILLQV------LLARSLLGDFPGCED 166 ++ + + ++ EE + + L+ L+ Sbjct: 128 NTYRNMALEAAASVQEFFTDVGLYLFGADVNPEEFVNRFFDSLFPLVYNRLINPAVTDSS 187 Query: 167 IEGMVIPSVGRK-------ISNIVMMGMGEPLCNFDNVKKS----LSIASDSMGLSFSK- 214 +E + R+ I VM MG L ++ + + + + L FSK Sbjct: 188 LEYSECIRMARRDVSPFGNIPKRVMGQMGRSLLPSRTFLQALNLGIEVINTTDYLHFSKE 247 Query: 215 -------RRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKY--PLEM 265 + G +G + VM H L P Y LE Sbjct: 248 CSRALLKMQYCPHCQGLTLTKPCMGYCLNVMRGCLAHMA------ELNPHWHAYIRSLEE 301 Query: 266 LIDACRHYPGLSNARRITFEYVMLK---GINDSPRDALNLIKILKGIPAKINLIPFNPWP 322 L DA E+V+L +ND+ A + L L N Sbjct: 302 LSDAMH--------GTYDIEHVLLNFHLLVNDAVLQAHLNGQKL--------LEQVNRIC 345 Query: 323 GCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353 G Q +F + ++ G + R Sbjct: 346 GRPVRTPTQSPRCSFDQSKEKHGMKTTTRNS 376 >gi|18313817|ref|NP_560484.1| molybdenum cofactor biosynthesis protein (moaA) [Pyrobaculum aerophilum str. IM2] gi|18161379|gb|AAL64666.1| molybdenum cofactor biosynthesis protein (moaA) [Pyrobaculum aerophilum str. IM2] Length = 254 Score = 37.9 bits (87), Expect = 2.5, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 60/171 (35%), Gaps = 34/171 (19%) Query: 91 RFPARCIGGPVEIE--TVYIPEK----SRGTLCVSSQ--VGCSLTCSFCYTGTQKLVRNL 142 R + V+IE VY K R +++ VGC+L C C+ RN Sbjct: 6 RLLQLVLEHAVKIEGGVVYRKYKRFRADRWYGGIATADVVGCNLRCGMCWAW-----RNT 60 Query: 143 TAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS 202 + VL A G + ++ + K V + GEPL +++ + + Sbjct: 61 SF------VLTA----GAWMAPHEVAARLREIAKSKGFQQVRISGGEPLIAPEHLLEVID 110 Query: 203 IASDSMGLSFSKRRITLSTSGFV---PNIARVGEEIGVMLAISLHAVSNDL 250 + S+ + T+G + + ++ +S+ + + Sbjct: 111 LL--------SEYTFVVETNGVLINRNLAKELASRPNAVVRVSIKGATPEE 153 >gi|182416944|ref|ZP_02948328.1| pyruvate formate-lyase-activating enzyme [Clostridium butyricum 5521] gi|237668693|ref|ZP_04528677.1| pyruvate formate-lyase-activating enzyme [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379242|gb|EDT76743.1| pyruvate formate-lyase-activating enzyme [Clostridium butyricum 5521] gi|237657041|gb|EEP54597.1| pyruvate formate-lyase-activating enzyme [Clostridium butyricum E4 str. BoNT E BL5262] Length = 305 Score = 37.9 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 35/213 (16%), Positives = 62/213 (29%), Gaps = 46/213 (21%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 CS C Q + +T +EIL I R I Sbjct: 95 CSSQCPTGAIVQQGKL--MTIKEILD-----------------IVEKDSDFYSRSEGGIT 135 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSF------SKRRITLSTSGFVP--NIARVGEEI 235 + G GEPL ++ + + T G+ + R + Sbjct: 136 LSG-GEPL------------MQGEFTINLLKEAKRRRMNTAIETCGYADYETLKRCAMNL 182 Query: 236 GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 + + ++ ND + + L C + L+ R + ND+ Sbjct: 183 D-TILFDIKSMDNDKHKKFTGLENEVILNNFNKLCVDFQKLNKCVRTPV----IPTFNDN 237 Query: 296 PRDALNLIKILKGIP-AKINLIPFNPWPGCEYL 327 D + LK P K L+P++ + +Y Sbjct: 238 EEDIRAIADFLKNKPNVKYELLPYHKFGEGKYK 270 >gi|229824233|ref|ZP_04450302.1| hypothetical protein GCWU000282_01537 [Catonella morbi ATCC 51271] gi|229786587|gb|EEP22701.1| hypothetical protein GCWU000282_01537 [Catonella morbi ATCC 51271] Length = 279 Score = 37.9 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 36/241 (14%), Positives = 71/241 (29%), Gaps = 49/241 (20%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C FC+ R P E + K + Sbjct: 57 GCRLRCEFCHNPD---------------TWATRGGHDYTPQQLFDEAVQYQDFWGKKGGV 101 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEEIGV 237 + G GEPL D + + I G+ TL + G P ++ E + Sbjct: 102 TVSG-GEPLLQIDFIIEYFKICKA-NGI-----HTTLDSCGGPFTRKEPFFSKFNELLKY 154 Query: 238 M--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 + + L + +D L P E ++D + + + + +V++ D Sbjct: 155 TDLILLDLKHIDSDGHRKLTGQ----PNENILDLAHYLSDI--GQPVWIRHVLVPERTDF 208 Query: 296 PRDALNLIKILKGIP--AKINLIPFNPWPGCEY------------LCSDQKDIVTFSECI 341 + L +K + K ++P++ +Y + + Sbjct: 209 DEYLIRLSAFVKTLKNVLKFEVLPYHKLGVYKYEALGIKYRLAGIEPPTPDRVENAKRIL 268 Query: 342 K 342 + Sbjct: 269 E 269 >gi|224368268|ref|YP_002602431.1| radical SAM domain family protein [Desulfobacterium autotrophicum HRM2] gi|223690984|gb|ACN14267.1| radical SAM domain family protein [Desulfobacterium autotrophicum HRM2] Length = 441 Score = 37.9 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 30/201 (14%), Positives = 74/201 (36%), Gaps = 28/201 (13%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+ C C + EE ++ + + P +I + + + + +++V Sbjct: 207 CNANCLGCISFQ---------EE--NNLVACQERITFTPSPTEIAQVALEHINKTDNSVV 255 Query: 184 MMGMG---EPLCNFDNVKKSLSIA---SDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 G G +PL F ++ ++ I +D ++ + +G + R+ Sbjct: 256 SFGQGCEGDPLTAFHVIEPAIEIIRRATDRGTINMNTN------AGMPDRLERLFTAGLD 309 Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 + +S+++V + + ++ + S + ++ Y+ G+ DS Sbjct: 310 SVRVSMNSVRQTCYTAYFRP-KSFTFSDVVKSIDT--AGSMGKFVSINYLNCPGVTDSEA 366 Query: 298 DALNLIKILKGIPAKINLIPF 318 + L K L P K +I + Sbjct: 367 EFTTLKKFLANHPVK--MIQW 385 >gi|189501679|ref|YP_001957396.1| hypothetical protein Aasi_0223 [Candidatus Amoebophilus asiaticus 5a2] gi|189497120|gb|ACE05667.1| hypothetical protein Aasi_0223 [Candidatus Amoebophilus asiaticus 5a2] Length = 441 Score = 37.9 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 62/167 (37%), Gaps = 16/167 (9%) Query: 111 KSRGTLCVSSQVGCSLTCSFCYTGTQ-KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169 R + Q GC+ CSFC R+ T E I+ Q AR + + G Sbjct: 138 GDRTRTFLKVQDGCNYHCSFCTIPLARGKSRSDTIESIVEQ---ARKIADQGIKEIVLTG 194 Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIA 229 + I G I+ NF ++ ++L D S L T + +A Sbjct: 195 VNIGDYG-----IIDNRRQ---TNFLSLIEALEKVVDIKRFRISSIEPNLLTDEIIQFVA 246 Query: 230 RVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276 + G + I L + +ND+ L + R+Y E+ ++ H L Sbjct: 247 QSGRFVP-HFHIPLQSGNNDI---LKLMRRRYQRELYVERVAHIKKL 289 >gi|86607742|ref|YP_476504.1| pyruvate formate-lyase activating enzyme [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556284|gb|ABD01241.1| pyruvate formate-lyase activating enzyme [Synechococcus sp. JA-2-3B'a(2-13)] Length = 249 Score = 37.9 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 40/266 (15%), Positives = 83/266 (31%), Gaps = 45/266 (16%) Query: 98 GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSL 157 G +ET + + +Q GC L C +C+ R+ A Q++ SL Sbjct: 13 GRIHSVETCGTVDGPGIRFVIFTQ-GCPLRCLYCHNPD---CRDPQAG----QLVTVESL 64 Query: 158 LGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRI 217 + + ++ V GEPL V + +GL + Sbjct: 65 IAEIQRYKNYLRGGG----------VTATGGEPLMQPTFVAEIFRR-CHELGL---HTAL 110 Query: 218 TLSTSGFVPNIARVGEEIG-VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL 276 S G + V E V+L I + L LE ++ R+ + Sbjct: 111 DTSGYGQLEAAKPVLEHTDLVLLDIKSYLP------ELYRKVTGVSLEPTLNLARYLDQI 164 Query: 277 SNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL------- 327 +V++ G+ D + L + + + ++ ++PF+ ++ Sbjct: 165 HK--PTWIRFVLVPGLTDPEENIKGLAEFVATLSNVERVEVLPFHKMGEYKWQQLGLPYT 222 Query: 328 -----CSDQKDIVTFSECIKRSGYSS 348 + + + + G + Sbjct: 223 LADVDPPTPEQVNHALQIFRDQGLVA 248 >gi|311695843|gb|ADP98716.1| molybdenum cofactor biosynthesis protein A [marine bacterium HP15] Length = 330 Score = 37.9 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 71/229 (31%), Gaps = 40/229 (17%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C C +C + QVL + D+ I G Sbjct: 25 CDFRCVYCMAEDMTFLPR-------QQVLTLEEIARVARSFVDLGTEKIRLTG------- 70 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMG-LSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 GEP+ V+K + +G +T + S + + L IS Sbjct: 71 ----GEPM-----VRKDILELVKEIGTYGLRDFAMTTNGSQLATMAEPLRKAGMHRLNIS 121 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 L ++ + + + + IDA R + R I V++KG ND + L Sbjct: 122 LDSLDPEKFRNITRTGKLSQVLDGIDAARE----AGFRGIKINTVVMKGRND--EEVPEL 175 Query: 303 IKILKGIPAKINLI---PFNPWPGCEY---LCSDQKDIVTFSECIKRSG 345 ++ + I I P + LC+ ++ + I++ Sbjct: 176 VEFARKKQVDITFIEEMPLGEISEHDRGLALCTSEEV----RDIIRKHH 220 >gi|269121318|ref|YP_003309495.1| pyruvate formate-lyase activating enzyme [Sebaldella termitidis ATCC 33386] gi|268615196|gb|ACZ09564.1| pyruvate formate-lyase activating enzyme [Sebaldella termitidis ATCC 33386] Length = 241 Score = 37.9 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 40/242 (16%), Positives = 82/242 (33%), Gaps = 45/242 (18%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C +C+ N+ ++ E + + K + Sbjct: 27 GCPLRCLYCH--------NVDT-------WDLKNKKYMLTPEETMHEISKVRGFIKSGGL 71 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLA 240 + G GEPL + + + + + K + TSG++ I V + ++L Sbjct: 72 TVSG-GEPLLQPEFILELFKLCREE------KIHTAIDTSGYLLNDRIKEVLDLTDLVLL 124 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 H + D L + K P ++ Y N + YV++ G D+ +D Sbjct: 125 DIKH-IDPDKYQALTSVELK-PTLEFME----YLSKINK-PVWVRYVLVPGYTDNEKDLK 177 Query: 301 NLIKILKGIPA--KINLIPFNPWPGCEYL------------CSDQKDIVTFSECIKRSGY 346 K + +++++PF+ ++ ++DI E K G Sbjct: 178 AWAKYVSNFKNVERVDILPFHQMASYKWEGLGRSYELKDTPAPSKEDIKKTEEIFKSFGL 237 Query: 347 SS 348 ++ Sbjct: 238 NT 239 >gi|208779105|ref|ZP_03246451.1| lysine 2,3-aminomutase YodO family protein [Francisella novicida FTG] gi|208744905|gb|EDZ91203.1| lysine 2,3-aminomutase YodO family protein [Francisella novicida FTG] Length = 328 Score = 37.9 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 43/263 (16%), Positives = 81/263 (30%), Gaps = 58/263 (22%) Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 LL Q E++D+ S D ++ + R + + +Q Sbjct: 62 LLKQVLPTADEEVIDQAYSSD----------PLDEKNYNKVPGLLHKYHGR--VLLIAQT 109 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 C++ C +C+ N+ PG +D + Sbjct: 110 SCAVHCRYCFRKEFDYKENI-------------------PGRKDWLKAFEYIANDQSIEE 150 Query: 183 VMMGMGEPLCNFDNVKKS----LSIASDSMGLSF-SKRRITLSTSGFVPNIARVGEE-IG 236 V++ G+PL N D + + + L S+ + L + + E + Sbjct: 151 VILSGGDPLLNNDEILEFFIENIQQIPHIKRLRIHSRIPVVLPERMTTKLLKILSEHRLD 210 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF-EYVMLKGINDS 295 +L I ++ + L+ + + IT + +LK IND Sbjct: 211 TVLVIHVNHPNE--------------LDDNVSKVLK--EIHKHGIITLNQSTLLKDINDD 254 Query: 296 PRDALNLIKILKGIPAKINLIPF 318 L L I AK+ IP+ Sbjct: 255 ANVLYALSTKL--INAKV--IPY 273 >gi|302534965|ref|ZP_07287307.1| pyruvate formate-lyase 1-activating enzyme [Streptomyces sp. C] gi|302443860|gb|EFL15676.1| pyruvate formate-lyase 1-activating enzyme [Streptomyces sp. C] Length = 289 Score = 37.9 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 40/215 (18%), Positives = 79/215 (36%), Gaps = 27/215 (12%) Query: 114 GTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIP 173 GT V+ GC LTC +C+ +RN + AR G Sbjct: 65 GTRFVTFLAGCPLTCLYCHNPDTMRMRNGRRTSADAVIAEARKYTRFISASG---GGATL 121 Query: 174 SVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE 233 S G + V G + L +GL L TSGF+ + R + Sbjct: 122 SGGEPLLQPVFAG------------ELLHRLKSDLGL-----HTALDTSGFLGS--RASD 162 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 + + + L + + R+ + + PLE +D R L + + +V++ G+ Sbjct: 163 ALLRDVDLVLLDIKSWDRDTYRKVTGR-PLEPTLDFARRLADL--GKEVHLRFVLVPGLT 219 Query: 294 DSPRDALNLIKILK--GIPAKINLIPFNPWPGCEY 326 ++ + + G ++++++PF+ ++ Sbjct: 220 NARENVEGIAAFAGTLGNVSRVDVLPFHKLGESKW 254 >gi|77919185|ref|YP_357000.1| hypothetical protein Pcar_1586 [Pelobacter carbinolicus DSM 2380] gi|77545268|gb|ABA88830.1| conserved hypothetical protein [Pelobacter carbinolicus DSM 2380] Length = 326 Score = 37.9 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 31/194 (15%), Positives = 71/194 (36%), Gaps = 29/194 (14%) Query: 124 CSLTCSFCYTGTQKLVRNLTAE----EILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 C+ +C +C G ++N E LLQ + R + Sbjct: 32 CTYSCVYCQVGRMTKMQNARQAFYKPEKLLQGVHNR-------------LENTRVASGCV 78 Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIA-RVGEEIGVM 238 + + GEP + N+ + + + L IT S+ + ++ + + V Sbjct: 79 DYLTFVPDGEPTLD-KNLGEEIHLL---ENLDIPIGVITNSSLLWREDVRNELAKADWVS 134 Query: 239 LAISLHAVSNDL--RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 + I ++L R + ++ L ++D + + +T E ++++G+ND+P Sbjct: 135 VKID---TVDELIWR-KINRPHKALCLSRILDGILTFSRKFTGKLVT-ETMLVRGVNDNP 189 Query: 297 RDALNLIKILKGIP 310 + + L + Sbjct: 190 GCVQGVAEFLHKLQ 203 >gi|261403551|ref|YP_003247775.1| Radical SAM domain protein [Methanocaldococcus vulcanius M7] gi|261370544|gb|ACX73293.1| Radical SAM domain protein [Methanocaldococcus vulcanius M7] Length = 300 Score = 37.9 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 49/269 (18%), Positives = 97/269 (36%), Gaps = 44/269 (16%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C FC K A E + +A ++L + + ++ K+ I Sbjct: 38 CNIACKFCRRSLGK-----EACE--NRPGVALTILKPEEVEDYLNRVLKEIPNIKVVGI- 89 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLAI 241 G G+ L N ++L I + F LST+G + ++ + + + Sbjct: 90 -AGPGDSLFN-KETFETLKIIDEK----FPNLIKCLSTNGLLLNKYYKKLADLNVKTVTV 143 Query: 242 SLHAVSNDLRNILVPI------------NRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 +++A+ ++ +V K +E ID + +I V++ Sbjct: 144 TVNAIDPEILKEIVEWVYYDKKVHYGIEGAKILIENQIDGIKKAYDEDLIIKINT--VLI 201 Query: 290 KGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ-KDIVTFSECIKRSGYSS 348 IN + + + K LK N+IP P +L ++I E ++ Sbjct: 202 PEINMN--HVVEIAKELKDFVYIQNIIPLIPLYKMSHLRPPTCEEIKKVREECEKY---- 255 Query: 349 PIRTPRGLDILAACGQLKSLSKRIPKVPR 377 I R ACGQ ++ + + K + Sbjct: 256 -IPQFR------ACGQCRADAVGLIKERK 277 >gi|159904963|ref|YP_001548625.1| radical SAM domain-containing protein [Methanococcus maripaludis C6] gi|159886456|gb|ABX01393.1| Radical SAM domain protein [Methanococcus maripaludis C6] Length = 457 Score = 37.9 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 26/194 (13%), Positives = 69/194 (35%), Gaps = 24/194 (12%) Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167 I ++ + V GC++ C FC + +E + D Sbjct: 123 IIDRGTNVIQVRGLSGCNINCPFC-----------SVDEGVHSKSRKNDYYVDVDYLVSE 171 Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNF--DNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225 + G + G GEP + ++ +SL+ + K +++ T+G V Sbjct: 172 YEKIADFKGYNKLEAHLDGQGEPSLYYPLPDLVQSLNEINSKN-----KGIVSIQTNG-V 225 Query: 226 PNIARVGEEIGVMLAISLH---AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI 282 ++ +++ V ++ ++ + + ++ Y +E +++ + ++ + Sbjct: 226 HLTEKLIDDLEVAGLHRINLSINAIDENFSKGLSGSKNYDIEKIMEIAEYI--KNSKIHL 283 Query: 283 TFEYVMLKGINDSP 296 ++L ND Sbjct: 284 LIAPLLLPNYNDEE 297 >gi|169347314|ref|ZP_02866252.1| hypothetical protein CLOSPI_00029 [Clostridium spiroforme DSM 1552] gi|169293931|gb|EDS76064.1| hypothetical protein CLOSPI_00029 [Clostridium spiroforme DSM 1552] Length = 214 Score = 37.9 bits (87), Expect = 2.8, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 58/167 (34%), Gaps = 34/167 (20%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDF-PGCEDIEGMVIPSVGRKISNI 182 C L C+FC +RN Q++ SL ++ P E I + Sbjct: 34 CFLACTFC-------LRNTK------QMIKDNSLWLEYEPSVEMIIDEFEKYNLNDFKEV 80 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG---------FVPNIARVGE 233 V G GEPL D+V + S I ++T+G P+ + + Sbjct: 81 VFCGFGEPLIRHDDVMEVAGYLKSKR----SDLPIRINTNGLASVALNRDITPDFENLID 136 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280 L+ISL+A + + + KY ++ D + S Sbjct: 137 ----TLSISLNAPNKEEYYQITRS--KYGIDSF-DHMLDFASKSKKH 176 >gi|19703606|ref|NP_603168.1| pyruvate formate-lyase activating enzyme [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296328725|ref|ZP_06871240.1| pyruvate formate-lyase activating enzyme [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|19713712|gb|AAL94467.1| Pyruvate formate-lyase activating enzyme [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296154162|gb|EFG94965.1| pyruvate formate-lyase activating enzyme [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 243 Score = 37.9 bits (87), Expect = 2.8, Method: Composition-based stats. Identities = 34/214 (15%), Positives = 80/214 (37%), Gaps = 34/214 (15%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C +C+ N+ E+ ++ + + V +S Sbjct: 27 GCPLRCLYCH--------NVDTWELKD---------KNYIYTPEEVLAELNKVKAFLSGG 69 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLA 240 + + GEPL V + G+ L TSG++ +V E ++L Sbjct: 70 ITISGGEPLLQSSFVLEVFK-LCKENGI-----HTALDTSGYIFNEQAKKVLEYTDLVL- 122 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 + + + D+ L + LE ++ ++ ++ YV++ G D +D Sbjct: 123 LDIKHIDKDMYKKLTSV----DLEPTLNFIKYLQEINK--PTWIRYVLVPGYTDDIKDLN 176 Query: 301 NLIKILKGIPA--KINLIPFNPWPGCEYLCSDQK 332 + K + +++++PF+ ++ ++++ Sbjct: 177 DWAKFVSQFDIVKRVDILPFHQMAIYKWEKTNRE 210 >gi|325282230|ref|YP_004254772.1| glycyl-radical enzyme activating protein family [Odoribacter splanchnicus DSM 20712] gi|324314039|gb|ADY34592.1| glycyl-radical enzyme activating protein family [Odoribacter splanchnicus DSM 20712] Length = 260 Score = 37.9 bits (87), Expect = 2.8, Method: Composition-based stats. Identities = 37/219 (16%), Positives = 62/219 (28%), Gaps = 30/219 (13%) Query: 123 GCSLTCSFCY--------TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 GC L C +C+ T + K VR L E + + G E Sbjct: 27 GCRLHCRWCHNPESQAVGTVSMKQVRKLGDREFEE---IRKVGYGISVDELVEEIAKDAV 83 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234 + V GEPL V L + T+G + E Sbjct: 84 FFEESGGGVTFSGGEPLL--QPVF-LLECLKACKARRI---HTCIDTAGVASGAY-LEEI 136 Query: 235 IGVM--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR-ITFEYVMLKG 291 + + +AC H ++ + ++ G Sbjct: 137 CRYTDLFLYDVKTADPQKFEAYIGKG-------FREACEHLRKIAGQGAGVIVRIPVIPG 189 Query: 292 INDSPRDALNLIKILKGIPAK--INLIPFNPWPGCEYLC 328 ND + I+ L+ +P +NL+PF+ +Y Sbjct: 190 FNDDKKSVQETIRFLQTMPVLKEVNLLPFHRTGADKYKR 228 >gi|255099315|ref|ZP_05328292.1| 4-hydroxyphenylacetate decarboxylase, activating subunit [Clostridium difficile QCD-63q42] Length = 316 Score = 37.9 bits (87), Expect = 2.8, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 61/187 (32%), Gaps = 23/187 (12%) Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236 R + G GEPL + + + ++ I S ++ +I Sbjct: 134 RSNGGVTFSG-GEPLLQHEFL---HEVLLKCHEVNV-HTAIETSACVSNEVFNKIFNDID 188 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 H R Y +++++ + R+ ++ G NDS Sbjct: 189 FAFIDIKHM----DREKHKEQTGVYN-DLILENISNLANSDWNGRLVLRVPVISGFNDSD 243 Query: 297 RDALNLIKIL-KGIPAKINLIPFNPWPGC-------EYLCSDQKDI-----VTFSECIKR 343 + ++I + K +INL+PF+ EY SD+ D+ + Sbjct: 244 ENISDIISFMHKNNLVEINLLPFHRLGESKWTQLGKEYEYSDKGDVDEGHLEELQDIFLD 303 Query: 344 SGYSSPI 350 +G + + Sbjct: 304 NGIACYV 310 >gi|75392923|sp|Q84F14|HPDA_CLODI RecName: Full=4-hydroxyphenylacetate decarboxylase activating enzyme; Short=Hpd-AE gi|28300943|emb|CAD65891.1| HpdA protein [Clostridium difficile] Length = 316 Score = 37.9 bits (87), Expect = 2.8, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 61/187 (32%), Gaps = 23/187 (12%) Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236 R + G GEPL + + + ++ I S ++ +I Sbjct: 134 RSNGGVTFSG-GEPLLQHEFL---HEVLLKCHEVNV-HTAIETSACVSNEVFNKIFNDID 188 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 H R Y +++++ + R+ ++ G NDS Sbjct: 189 FAFIDIKHM----DREKHKEQTGVYN-DLILENISNLANSDWNGRLVLRVPVISGFNDSD 243 Query: 297 RDALNLIKIL-KGIPAKINLIPFNPWPGC-------EYLCSDQKDI-----VTFSECIKR 343 + ++I + K +INL+PF+ EY SD+ D+ + Sbjct: 244 ENISDIISFMHKNNLVEINLLPFHRLGESKWTQLGKEYEYSDKGDVDEGHLEELQDIFLD 303 Query: 344 SGYSSPI 350 +G + + Sbjct: 304 NGIACYV 310 >gi|313905270|ref|ZP_07838637.1| pyruvate formate-lyase activating enzyme [Eubacterium cellulosolvens 6] gi|313469881|gb|EFR65216.1| pyruvate formate-lyase activating enzyme [Eubacterium cellulosolvens 6] Length = 244 Score = 37.9 bits (87), Expect = 2.9, Method: Composition-based stats. Identities = 36/242 (14%), Positives = 76/242 (31%), Gaps = 51/242 (21%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C +C+ ++ + + R I Sbjct: 28 GCKMRCRYCHNAD---------------TWKMQTDNMKTADELLDQAERYKAYWRDDGGI 72 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-----PNIARVGEEIGV 237 + G GEPL D + A G+ + + T+G P ++ E + Sbjct: 73 TVSG-GEPLLQIDFLLDLFKKA-KERGI-----KTCIDTAGQPFTREEPFFSKFKELMQY 125 Query: 238 M--LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS 295 L + + + ++ L P E + D R+ + I +V++ GI D Sbjct: 126 TDLLLVDIKHIDSEEHKKLTAQ----PNENIHDMFRYLSEIDK--PIWIRHVLVPGITDD 179 Query: 296 P---RDALNLIKILKGIPAKINLIPFNPWPGCEYL------------CSDQKDIVTFSEC 340 R+ I+ L + +I ++P++ ++ D + E Sbjct: 180 DRWLRETRKFIETLHNVQ-RIEVLPYHSLGEFKWEELGVPYTLGGVNPPDADRVKNAVEI 238 Query: 341 IK 342 ++ Sbjct: 239 LR 240 >gi|325969715|ref|YP_004245907.1| radical SAM protein [Vulcanisaeta moutnovskia 768-28] gi|323708918|gb|ADY02405.1| Radical SAM domain protein [Vulcanisaeta moutnovskia 768-28] Length = 251 Score = 37.9 bits (87), Expect = 2.9, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%) Query: 276 LSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLI--PFNPWPGCEYLCSDQKD 333 L + ++ FE V++ G+ND D + K L GI LI P P PG + Q++ Sbjct: 160 LESGIKVIFETVLIPGLND-INDIEEIAKYLAGIAKDPTLIIDPLIPIPGTPWRRPTQEE 218 Query: 334 IV 335 + Sbjct: 219 LN 220 >gi|254457135|ref|ZP_05070563.1| radical SAM domain protein [Campylobacterales bacterium GD 1] gi|207085927|gb|EDZ63211.1| radical SAM domain protein [Campylobacterales bacterium GD 1] Length = 341 Score = 37.9 bits (87), Expect = 2.9, Method: Composition-based stats. Identities = 37/272 (13%), Positives = 92/272 (33%), Gaps = 36/272 (13%) Query: 82 CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVS-SQVGCSLTCSFCYTGTQKLVR 140 DG K L+ + +E + + S VGC+L+C FC Sbjct: 41 EDGELKLLV-YGLAAAVNVDPVEKKPMFHFLPKSRAFSVGTVGCNLSCKFCQN------- 92 Query: 141 NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKS 200 EI Q ++ G E ++ + + EP+ F+ + Sbjct: 93 ----HEI-SQ--YSKENNHKIAGHELPPEQIVALAIENKCDSIAYTYNEPIVFFEYTYDT 145 Query: 201 LSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRK 260 + G+ + I +++ + + + I + + S++ + R Sbjct: 146 AK-LAHEKGI----KNIYVTSGYETKKAIDLLQPYIDGMNIDIKSFSDEFYKEIC-GAR- 198 Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFN- 319 L+ +++A ++ IT +++ G NDS + ++ + + + IP++ Sbjct: 199 --LKPVLEAVKYAHEKGIWVEITT--LLISGKNDSDEEIRSIARFIADLDTS---IPWHL 251 Query: 320 -----PWPGCEYLCSDQKDIVTFSECIKRSGY 346 + + + + ++ + + G Sbjct: 252 SAFHPMYKMLDVERTPESTLLRAYKIGQEEGL 283 >gi|148260603|ref|YP_001234730.1| molybdenum cofactor biosynthesis protein A [Acidiphilium cryptum JF-5] gi|146402284|gb|ABQ30811.1| GTP cyclohydrolase subunit MoaA [Acidiphilium cryptum JF-5] Length = 331 Score = 37.9 bits (87), Expect = 2.9, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 59/177 (33%), Gaps = 26/177 (14%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C C +C + D E++E + V + + Sbjct: 23 CDFRCVYCMAEDMTFLP-----------------KADLLSLEELERLAGAFVDLGVRKLR 65 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 + G GEPL V ++ +G +TL+T+G + R +E+ + Sbjct: 66 LTG-GEPLV-RRGVMALINRLGQRIGQGL--DELTLTTNG--SQLGRFADELVAAGVKRV 119 Query: 244 HAVSNDLRNILVPINRKYP-LEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 + + L ++ L +ID + R+ V LKG+N+ DA Sbjct: 120 NVSIDTLDEEKFRTITRWGRLPQVIDGV--MAAKAAGLRVKVNAVALKGVNEDEFDA 174 >gi|150020309|ref|YP_001305663.1| radical SAM domain-containing protein [Thermosipho melanesiensis BI429] gi|149792830|gb|ABR30278.1| Radical SAM domain protein [Thermosipho melanesiensis BI429] Length = 439 Score = 37.9 bits (87), Expect = 2.9, Method: Composition-based stats. Identities = 38/206 (18%), Positives = 75/206 (36%), Gaps = 36/206 (17%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 + ++ C+L C +CY + + + DF + + Sbjct: 70 AIVLTISHECNLQCKYCYGNSGTYN---------------NAGIMDFKIAKMAIEKLFDK 114 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVG 232 + I G GEPL NF+ +++ + A +G + R ++T+G +IA Sbjct: 115 EQSNV-GISFFG-GEPLINFEVIRQVVKFAKKYLGKN---VRFGITTNGTLINDDIASFL 169 Query: 233 EEIGVMLAISLHA---VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 + + +SL ++ LR N + +I+ + RRI+ + Sbjct: 170 KNNDFNIMVSLDGNKLNNDKLRR---TKNNEGTYTRIIEGIKTLTSHDINRRISVHATLT 226 Query: 290 KGINDSPRDALNLIKILKGIPAKINL 315 ND LI+++K +NL Sbjct: 227 SVNND-------LIELVKHF-VNMNL 244 >gi|326403798|ref|YP_004283880.1| molybdenum cofactor biosynthesis protein A [Acidiphilium multivorum AIU301] gi|325050660|dbj|BAJ80998.1| molybdenum cofactor biosynthesis protein A [Acidiphilium multivorum AIU301] Length = 331 Score = 37.9 bits (87), Expect = 3.0, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 59/177 (33%), Gaps = 26/177 (14%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C C +C + D E++E + V + + Sbjct: 23 CDFRCVYCMAEDMTFLP-----------------KADLLSLEELERLAGAFVDLGVRKLR 65 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 + G GEPL V ++ +G +TL+T+G + R +E+ + Sbjct: 66 LTG-GEPLV-RRGVMALINRLGQRIGQGL--DELTLTTNG--SQLGRFADELVAAGVKRV 119 Query: 244 HAVSNDLRNILVPINRKYP-LEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 + + L ++ L +ID + R+ V LKG+N+ DA Sbjct: 120 NVSIDTLDEEKFRTITRWGRLPQVIDGV--MAAKAAGLRVKVNAVALKGVNEDEFDA 174 >gi|154295552|ref|XP_001548211.1| predicted protein [Botryotinia fuckeliana B05.10] gi|150844027|gb|EDN19220.1| predicted protein [Botryotinia fuckeliana B05.10] Length = 357 Score = 37.9 bits (87), Expect = 3.0, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 52/132 (39%), Gaps = 11/132 (8%) Query: 209 GLSFSKRRITL--STSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEML 266 G+S + T+ S +GF+ + +A ++ R+ N + L++ Sbjct: 190 GISIGREDYTIACSLTGFLKQNDDIYSLTCRQVAF----PDDNFRSEYKYRNGEEKLQVS 245 Query: 267 IDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG-IPAKINLIPFN----PW 321 I A + + + T + + N + +DA N+ K + I K LI +N Sbjct: 246 IPALKDHVETKRRLKSTLDSIEFAIKNSAFKDAANIDKKYRNEILRKAALIRYNDAEDYC 305 Query: 322 PGCEYLCSDQKD 333 P Y+ + ++ Sbjct: 306 PNAGYVSAAPEE 317 >gi|330991009|ref|ZP_08314963.1| L-lysine 2-3-aminomutase [Gluconacetobacter sp. SXCC-1] gi|329761830|gb|EGG78320.1| L-lysine 2-3-aminomutase [Gluconacetobacter sp. SXCC-1] Length = 359 Score = 37.6 bits (86), Expect = 3.0, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 61/186 (32%), Gaps = 38/186 (20%) Query: 124 CSLTCSFCYTGTQKLVR-NLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 C L C FC R ++ G +E + + Sbjct: 114 CPLYCRFC------FRREHVGPG-------------GSVLDDAALEHALDWLRTHTGIHE 154 Query: 183 VMMGMGEPLC----NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238 V+M G+PL + ++L + R+ ++ G + + + + Sbjct: 155 VVMTGGDPLMLSARRMRAIMQALEGMDHIHTIRI-HSRVPVADPGRLD--DEMADALETT 211 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 ++ L N R L P R A R + + + V+L+G+ND+P+ Sbjct: 212 RSMWLVVHVNHAR-ELTPQAR--------AAIRRVQARA--IPVLGQSVLLRGVNDTPQA 260 Query: 299 ALNLIK 304 L++ Sbjct: 261 LEALLR 266 >gi|52080502|ref|YP_079293.1| putative pyruvate formate-lyase-activating enzyme [Bacillus licheniformis ATCC 14580] gi|52785882|ref|YP_091711.1| hypothetical protein BLi02131 [Bacillus licheniformis ATCC 14580] gi|319645536|ref|ZP_07999768.1| hypothetical protein HMPREF1012_00801 [Bacillus sp. BT1B_CT2] gi|52003713|gb|AAU23655.1| putative Pyruvate formate-lyase-activating enzyme [Bacillus licheniformis ATCC 14580] gi|52348384|gb|AAU41018.1| putative protein [Bacillus licheniformis ATCC 14580] gi|317392422|gb|EFV73217.1| hypothetical protein HMPREF1012_00801 [Bacillus sp. BT1B_CT2] Length = 252 Score = 37.6 bits (86), Expect = 3.0, Method: Composition-based stats. Identities = 45/268 (16%), Positives = 83/268 (30%), Gaps = 49/268 (18%) Query: 98 GGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLA 154 G IET + V +Q GC + C FC+ T + +T EI+ V Sbjct: 3 GNIHSIETFGTVDGPGIRYVVFTQ-GCLMRCQFCHNADTWEIGTGKQMTVSEIVQDVQH- 60 Query: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFD---NVKKSLSIASDSMGLS 211 +P + I + G GEPL + K+ L Sbjct: 61 ----------------YLPFIQSSGGGITVSG-GEPLLQLPFLIELFKACKSLGIHTALD 103 Query: 212 FSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACR 271 S + + F I + + ++L + L + L P + +++ R Sbjct: 104 SSGGCYS-AAPAFQEQIKELIQYTDLVL-LDLKHHNRKKHINLT----GMPNDHILEFAR 157 Query: 272 HYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA---KINLIPFNPWP------ 322 + + +V++ GI+D D L + G A K+ ++P++ Sbjct: 158 FLAE--HQVPVWIRHVLVPGISDIDADLTALGTFI-GTLANVQKVEVLPYHKLGVYKWEA 214 Query: 323 -GCEY-----LCSDQKDIVTFSECIKRS 344 G +Y + Sbjct: 215 LGLDYPLKGVEPPSADRAENAYRLLTAH 242 >gi|87198947|ref|YP_496204.1| GTP cyclohydrolase subunit MoaA [Novosphingobium aromaticivorans DSM 12444] gi|87134628|gb|ABD25370.1| GTP cyclohydrolase subunit MoaA [Novosphingobium aromaticivorans DSM 12444] Length = 339 Score = 37.6 bits (86), Expect = 3.0, Method: Composition-based stats. Identities = 40/210 (19%), Positives = 75/210 (35%), Gaps = 37/210 (17%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C L C++C + + + E++ + + + R + I Sbjct: 31 CDLRCAYCMPERMEFLP-----------------KAEVLSLEELHRLSLHFIARGVRKIR 73 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 + G GEPL D V + +G +T++T+G R+ E G + A L Sbjct: 74 LTG-GEPLVRRDMV-DLVRALGRKLGDGL--DELTMTTNGT-----RLAEFAGDLAAAGL 124 Query: 244 HAVSNDL----RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 ++ L R ++R+ L +++ R+ V LKGIN + Sbjct: 125 RRINVSLDTLDREAFARLSRRDVLPQVLEGIA--AAREAGLRVKINAVALKGIN--EDEI 180 Query: 300 LNLIKILKGIPAKINLI---PFNPWPGCEY 326 +L++ G + LI P G + Sbjct: 181 PSLVEWAHGQGHDMTLIEVMPLGEVEGDRF 210 >gi|332216583|ref|XP_003257432.1| PREDICTED: glypican-5 [Nomascus leucogenys] Length = 572 Score = 37.6 bits (86), Expect = 3.1, Method: Composition-based stats. Identities = 52/331 (15%), Positives = 97/331 (29%), Gaps = 66/331 (19%) Query: 63 LLNQHFSIIYPEIVDE--KISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120 + + + I + + + + S T K+L+ A +E I + T + Sbjct: 72 KMEERYQIAARQDMQQFLQTSS-STLKFLISRNAAAFQETLET---LIKQAENYTSILFC 127 Query: 121 QVGCSLTCSFCYTGTQKLV--------RNLTAEEILLQV------LLARSLLGDFPGCED 166 ++ + + ++ EE + + L+ L+ Sbjct: 128 NTYRNMALEAAASVQEFFTDVGLYLFGADVNPEEFVNRFFDSLFPLVYNHLINPGVTDSS 187 Query: 167 IEGMVIPSVGRK-------ISNIVMMGMGEPLCNFDNVKKS----LSIASDSMGLSFSK- 214 +E + R+ I VM MG L ++ + + + + L FSK Sbjct: 188 LEYSECIRMARRDVSPFGNIPKRVMGQMGRSLLPSRTFLQALNLGIEVINTTDYLHFSKE 247 Query: 215 -------RRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKY--PLEM 265 + G +G + VM +H L P Y LE Sbjct: 248 CSRALLKMQYCPHCQGLTLTKPCMGYCLNVMRGCLVHMA------ELNPHWHAYIRSLEE 301 Query: 266 LIDACRHYPGLSNARRITFEYVMLK---GINDSPRDALNLIKILKGIPAKINLIPFNPWP 322 L DA E+V+L +ND+ A + L L N Sbjct: 302 LSDAMH--------GTYDIEHVLLNFHLLVNDAVIQAHLNGQKL--------LEQVNRIC 345 Query: 323 GCEYLCSDQKDIVTFSECIKRSGYSSPIRTP 353 G Q +F + ++ G + R Sbjct: 346 GRPVRTPTQSPRCSFDQSKEKHGMKTTARNS 376 >gi|303244214|ref|ZP_07330551.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1] gi|302485341|gb|EFL48268.1| Radical SAM domain protein [Methanothermococcus okinawensis IH1] Length = 324 Score = 37.6 bits (86), Expect = 3.1, Method: Composition-based stats. Identities = 39/216 (18%), Positives = 76/216 (35%), Gaps = 30/216 (13%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 CS C +C N T I Q + D + + + KI I Sbjct: 35 CSYDCIYCQV---GRTINKT---IKRQEFY---KVEDIVSSVKKKVHNLKNNNEKIDYIT 85 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML-AIS 242 + GEP + N+KK + L IT ++ + ++ + + L ++ Sbjct: 86 YVPDGEPTLDI-NLKKEVEELKK---LDIPIAIITNTSLMYREDVR--NDLMDFNLVSLK 139 Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302 ++ V + I+ + + L+ +++ + S +I E ++L GIN + + Sbjct: 140 VNTVEEEFWKIIDRPHDELNLKDILEGILTF-KESFKGKIITETMLLDGINYTDEVIEDT 198 Query: 303 IKILKGI---PAKINLIPFNPWPGCEYLCSDQKDIV 335 K LK + I+ IP + I Sbjct: 199 AKFLKRLSPNKCYIS-IPI---------RPPAEKIK 224 >gi|125973301|ref|YP_001037211.1| RNA modification protein [Clostridium thermocellum ATCC 27405] gi|256003782|ref|ZP_05428770.1| RNA modification enzyme, MiaB family [Clostridium thermocellum DSM 2360] gi|281417504|ref|ZP_06248524.1| RNA modification enzyme, MiaB family [Clostridium thermocellum JW20] gi|229890498|sp|A3DDI9|MIAB_CLOTH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|125713526|gb|ABN52018.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium thermocellum ATCC 27405] gi|255992343|gb|EEU02437.1| RNA modification enzyme, MiaB family [Clostridium thermocellum DSM 2360] gi|281408906|gb|EFB39164.1| RNA modification enzyme, MiaB family [Clostridium thermocellum JW20] gi|316940466|gb|ADU74500.1| RNA modification enzyme, MiaB family [Clostridium thermocellum DSM 1313] Length = 480 Score = 37.6 bits (86), Expect = 3.1, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 62/198 (31%), Gaps = 31/198 (15%) Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGT-QKLVRNLTAEEILLQVL 152 E V I K V+ GC+ C++C + R+ + ++IL +V Sbjct: 168 DVWDCDGQIAENVAIERKDGVKAWVTVMYGCNNFCTYCIVPYVRGRERSRSMDDILEEV- 226 Query: 153 LARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF 212 R L + G + S G+ I G G + + G+ Sbjct: 227 --RMLGRQGFKEITLLGQNVNSYGKDI------GDGTSFAEL------IREVNKIPGI-- 270 Query: 213 SKRRITLSTSGFVPNIARVGEEIGVML------AISLHAVSNDLRNILVP-INRKYPLEM 265 RI +TS + +++ + LH ++ +NRKY E Sbjct: 271 --ERIRFTTSHP----KDLSDDLIYAMRDCEKVCEHLHLPFQAGSTRILKLMNRKYTKED 324 Query: 266 LIDACRHYPGLSNARRIT 283 I+ +T Sbjct: 325 YINLVAKIKENIPDIALT 342 >gi|260913742|ref|ZP_05920218.1| KamA family protein [Pasteurella dagmatis ATCC 43325] gi|260632281|gb|EEX50456.1| KamA family protein [Pasteurella dagmatis ATCC 43325] Length = 337 Score = 37.6 bits (86), Expect = 3.1, Method: Composition-based stats. Identities = 46/289 (15%), Positives = 90/289 (31%), Gaps = 51/289 (17%) Query: 73 PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132 P + S D + + +V +R L V GC++ C +C Sbjct: 71 PLFLQVMSSADEFIQVEGFTTDPLEEQEAVVPSVLHKYHNRLLLMVKG--GCAVNCRYC- 127 Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192 R+ + + + ++ +I ++ G G+PL Sbjct: 128 -----FRRHFPYAD------------NKGNKVNWQKALDYIAIRPEIEEVIFSG-GDPLM 169 Query: 193 NFDN----VKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSN 248 D+ + K+L L R + P + ++ E + H Sbjct: 170 AKDHELNWLIKNLENIPHLQRLRIHTRLPVVIPQRITPELCKILSESRFQTVLVTH---- 225 Query: 249 DLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF-EYVMLKGINDSPRDALNLIKILK 307 IN ++ + A L A + + V+LK IND + L L Sbjct: 226 --------INHPNEIDTTLSAA--IFKLKQAGVVLLNQSVLLKNINDDAQILKQLSDKL- 274 Query: 308 GIPAKINLIPF-----NPWPGCEYLCSDQKDIVTFSECIKR--SGYSSP 349 IN++P+ + G + + + + + ++ SGY P Sbjct: 275 ---FSINILPYYLHLLDKVEGASHFYIEDEKALNIYKILQSITSGYLVP 320 >gi|222055680|ref|YP_002538042.1| radical SAM protein [Geobacter sp. FRC-32] gi|221564969|gb|ACM20941.1| Radical SAM domain protein [Geobacter sp. FRC-32] Length = 286 Score = 37.6 bits (86), Expect = 3.1, Method: Composition-based stats. Identities = 36/231 (15%), Positives = 80/231 (34%), Gaps = 36/231 (15%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C +C R+ A E + +R L + + E M +G I + Sbjct: 35 CNIKCGYCS------RRHDCANE-SRPGVTSRLLTPEEAMVKVREVMASKVLGSMIKVVG 87 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVMLAI 241 + G G+PL N + + +G F +ST+G I + E L + Sbjct: 88 IAGPGDPLANEETFETF-----RQVGEEFPHLIKCMSTNGLLLPEKIDLLQELGLHSLTV 142 Query: 242 SLHAVSNDLRNILV------------PINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 +++A+ + + P + + + + I V++ Sbjct: 143 TINAIDPAVGAKIYSHILYHGRKLNGPQAVEMLIANQLAGLKKAAEF--GMTIKVNTVLI 200 Query: 290 KGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEYL---CSDQKDIVT 336 G+N+ + + +K + A + N++P P ++ + + Sbjct: 201 PGVNEG--QVPLIAEKVKALGAFVMNVLPL--IPQADFAAHLPPTEAQLEE 247 >gi|94984412|ref|YP_603776.1| hypothetical protein Dgeo_0304 [Deinococcus geothermalis DSM 11300] gi|94554693|gb|ABF44607.1| Fe-S oxidoreductase, NifB/MoaA family containing PDZ domain [Deinococcus geothermalis DSM 11300] Length = 496 Score = 37.6 bits (86), Expect = 3.1, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 6/119 (5%) Query: 199 KSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPIN 258 KSL I D LSF T+ +I R+ +E L +S+H + +LR L+ Sbjct: 145 KSLYIMDDDYRLSFLYGSFVTLTNLTESDINRILDEHLSPLYVSVHTANQELRQDLMKW- 203 Query: 259 RKYPLEMLIDA-CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLI 316 K ++ R + + V++ G ND I+ L P N+I Sbjct: 204 WKLKVKDPQAVQIRTMIERLEPIDLYTQIVLVPGRNDR-EHLDETIEYLASRP---NVI 258 >gi|89256661|ref|YP_514023.1| hypothetical protein FTL_1362 [Francisella tularensis subsp. holarctica LVS] gi|115315075|ref|YP_763798.1| hypothetical protein FTH_1327 [Francisella tularensis subsp. holarctica OSU18] gi|156502809|ref|YP_001428874.1| hypothetical protein FTA_1443 [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010527|ref|ZP_02275458.1| radical SAM domain protein [Francisella tularensis subsp. holarctica FSC200] gi|290953399|ref|ZP_06558020.1| hypothetical protein FtulhU_03333 [Francisella tularensis subsp. holarctica URFT1] gi|295313360|ref|ZP_06803969.1| hypothetical protein FtulhU_03323 [Francisella tularensis subsp. holarctica URFT1] gi|89144492|emb|CAJ79801.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica LVS] gi|115129974|gb|ABI83161.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica OSU18] gi|156253412|gb|ABU61918.1| lysine 2,3-aminomutase, YodO family protein [Francisella tularensis subsp. holarctica FTNF002-00] Length = 328 Score = 37.6 bits (86), Expect = 3.1, Method: Composition-based stats. Identities = 44/262 (16%), Positives = 83/262 (31%), Gaps = 56/262 (21%) Query: 63 LLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQV 122 LL Q E++D+ S D ++ + R + + +Q Sbjct: 62 LLKQVLPTADEEVIDQAYSSD----------PLDEKNYNKVPGLLHKYHGR--VLLIAQT 109 Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 C++ C +C+ N+ PG +D + Sbjct: 110 ICAVHCRYCFRKEFDYKENI-------------------PGRKDWLQAFEYIANDQSIEE 150 Query: 183 VMMGMGEPLCNFDNVKKS----LSIASDSMGLSF-SKRRITLSTSGFVPNIARVGEE-IG 236 V++ G+PL N D + + + S L S+ + L + + E + Sbjct: 151 VILSGGDPLLNNDEILEFFIENIQRISHIKRLRIHSRIPVVLPERMTTKLLKILSEHRLD 210 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 +L I ++ + + N L+ + + I + +LK IND Sbjct: 211 TVLVIHVNHPNE------LDGNVSKVLKEI---------HKHGIIILNQSTLLKDINDDA 255 Query: 297 RDALNLIKILKGIPAKINLIPF 318 L L I AK+ IP+ Sbjct: 256 NVLYALSTKL--INAKV--IPY 273 >gi|156937582|ref|YP_001435378.1| radical SAM domain-containing protein [Ignicoccus hospitalis KIN4/I] gi|156566566|gb|ABU81971.1| Radical SAM domain protein [Ignicoccus hospitalis KIN4/I] Length = 285 Score = 37.6 bits (86), Expect = 3.1, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 70/194 (36%), Gaps = 32/194 (16%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC +C +CY + + + E +E + + K+ N+ Sbjct: 30 GCPFSCLYCYATS----------------YIGKKFYPKKNFLERLECDLRKADRSKVINV 73 Query: 183 VMMGMGEPLCN--FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-GVML 239 P + + +L + D G ++ ++T G + R + I G+ Sbjct: 74 STSSDPYPPIEERLELTRGALKLIRD-YGF-----KVLITTKGVL--FERDADLIEGIGA 125 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY-VMLKGINDSPRD 298 + ++ ++ PLE ++A + +S+ + ++ G+NDS D Sbjct: 126 IMVTITTLDEELARVMEPGAPSPLER-LEAIKR---VSHRVPVGVRIDPVVPGVNDSEDD 181 Query: 299 ALNLIKILKGIPAK 312 ++K+LK K Sbjct: 182 IKEMLKLLKNAGVK 195 >gi|222100781|ref|YP_002535349.1| Radical SAM domain protein [Thermotoga neapolitana DSM 4359] gi|221573170|gb|ACM23982.1| Radical SAM domain protein [Thermotoga neapolitana DSM 4359] Length = 598 Score = 37.6 bits (86), Expect = 3.2, Method: Composition-based stats. Identities = 40/202 (19%), Positives = 69/202 (34%), Gaps = 39/202 (19%) Query: 118 VSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 V GC+ C FC+ I + + RSL E + Sbjct: 253 VEVARGCTRGCRFCHAS------------IYYRPVRERSLENIIENAEKMLKNTGYEEIS 300 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI-- 235 +S L D+ + + + + FS+R+I +S + R G EI Sbjct: 301 LLS----------LSTMDHTQ--IEKVVEELLRRFSERKIAISI--PSTRMDRFGVEIAS 346 Query: 236 ------GVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVML 289 L + A + LRNI+ + + ++A R S RR+ Y M+ Sbjct: 347 RIASVRKTGLTFAPEAATQRLRNIINKNIEEQDIFSTLEAAR----KSGWRRVKL-YFMV 401 Query: 290 KGINDSPRDALNLIKILKGIPA 311 ++ D L+ +L + A Sbjct: 402 GLPGETEEDLKELVDLLGRVKA 423 >gi|78358321|ref|YP_389770.1| radical-activating enzyme [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220726|gb|ABB40075.1| Radical-activating enzyme [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 320 Score = 37.6 bits (86), Expect = 3.2, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 18/90 (20%) Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303 H +RN L+ N + LE N + +L+G+NDS D L+ Sbjct: 207 HYELTGVRNELILSNLTWLLE-------------NKHNVKIRVPLLRGVNDSEDDLRGLV 253 Query: 304 KILKGIPAKIN-----LIPFNPWPGCEYLC 328 + L+ N L+P++ +Y Sbjct: 254 EYLRPYQDYKNFKGIDLLPYHKMGVGKYKQ 283 >gi|307595521|ref|YP_003901838.1| Radical SAM domain-containing protein [Vulcanisaeta distributa DSM 14429] gi|307550722|gb|ADN50787.1| Radical SAM domain protein [Vulcanisaeta distributa DSM 14429] Length = 252 Score = 37.6 bits (86), Expect = 3.3, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 80/219 (36%), Gaps = 31/219 (14%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC+ TC +C +L +E L+ G E + + + + Sbjct: 23 GCNFTCPWCIRRLTPWDHHLENKE-----LVRLKFQGLLNIDEFLSIIDDAMINYGLEET 77 Query: 183 VMMGMGEPLCNFDNVKKSL-SIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM--- 238 V+ G EP D + ++ D K RI L T+ + + + E Sbjct: 78 VLGGE-EP--TIDPMLPTIIRELRDR------KLRIRLLTNAYEISNELLNELSQCTNCE 128 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDS--- 295 + I + + D + + PLE ++ R + R+ FE V++ +ND+ Sbjct: 129 VVIGIKTLDPDK--HIKYTGK--PLEPVLRNIRRLI--KSNVRVIFETVLIPSLNDAKDI 182 Query: 296 PRDALNLIKILKGIPAKIN-LIPFNPWPGCEYLCSDQKD 333 A L I++ I+ LIP PG + +++ Sbjct: 183 EEIAKYLASIVRDPVLIIDPLIP---IPGTPWRRPTREE 218 >gi|224536031|ref|ZP_03676570.1| hypothetical protein BACCELL_00895 [Bacteroides cellulosilyticus DSM 14838] gi|224522356|gb|EEF91461.1| hypothetical protein BACCELL_00895 [Bacteroides cellulosilyticus DSM 14838] Length = 439 Score = 37.6 bits (86), Expect = 3.3, Method: Composition-based stats. Identities = 39/206 (18%), Positives = 62/206 (30%), Gaps = 21/206 (10%) Query: 111 KSRGTLCVSSQVGCSLTCSFCYTG-TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169 R + Q GC CS+C + RN T ++ Q AR + + G Sbjct: 146 GDRTRYFLKVQDGCDYFCSYCTIPFARGRSRNGTIASMVEQ---ARQAAAEGGKEIVLTG 202 Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIA 229 + I G GE N K+L S L T + Sbjct: 203 VNIGDFG--------KTTGETFFNL---VKALDEVEGIERYRISSIEPNLLTDEII-EFV 250 Query: 230 RVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVM- 288 I L + S+++ L + R+Y E+ R + I + ++ Sbjct: 251 SHSRSFMPHFHIPLQSGSDEV---LKLMRRRYDTELFASKVRKVKEVMPDAFIGVDVIVG 307 Query: 289 LKGINDSP-RDALNLIKILKGIPAKI 313 +G D A IK L + Sbjct: 308 TRGETDEYFEQAYEFIKSLDVTQLHV 333 >gi|146296194|ref|YP_001179965.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409770|gb|ABP66774.1| anaerobic ribonucleoside-triphosphate reductase activating protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 231 Score = 37.6 bits (86), Expect = 3.3, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 80/234 (34%), Gaps = 45/234 (19%) Query: 96 CIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ-KLVRNLTAEEILLQVLLA 154 + ++I TV P+K T C GC+ +C FCY N + I + L Sbjct: 1 MLVDFMKISTVDYPKKIAAT-CFFG--GCNFSCPFCYNSQLVNFKGNFMDDSIFFEYLDK 57 Query: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSK 214 R + + + + G GEP N + + + + L Sbjct: 58 RKGI--------------------VDAVCITG-GEPTLNEEYLTEFIKKIKQRDLL---- 92 Query: 215 RRITLSTSGFVPN-IARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272 + L T+G P + R+ + + +A+ + A P + +D R Sbjct: 93 --VKLDTNGSRPEVLQRLLDAGLLDYVAMDVKAPLEK-----YPQITGFS---EVDKIRR 142 Query: 273 YPGLSNARRITFEYVMLKGIN-DSPRDALNLIKILKGIPAKINLI-PFNPWPGC 324 + I +E+ N + D LN+ ++LK + I P+ P Sbjct: 143 SIEILKNSNIDYEFRTTVNKNLHTVEDILNIARLLKDAKLYV--IKPYKYTPEV 194 >gi|257064441|ref|YP_003144113.1| glycyl-radical enzyme activator family protein [Slackia heliotrinireducens DSM 20476] gi|256792094|gb|ACV22764.1| glycyl-radical enzyme activator family protein [Slackia heliotrinireducens DSM 20476] Length = 311 Score = 37.6 bits (86), Expect = 3.3, Method: Composition-based stats. Identities = 17/144 (11%), Positives = 48/144 (33%), Gaps = 16/144 (11%) Query: 211 SFSKRRITLSTSGFVPNIARVGEEIGVM-LAISLHAVSNDLRNILVPINRKYPLEMLIDA 269 S I + G + + + V + L ++ +++ + + Sbjct: 159 GISTC-IDTTGYGDAEALLDLASKDSVTTVLYDLKSIDDEVHRE-YTGVGNETILANLRL 216 Query: 270 CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPW------- 321 +I ++KG+ND ++ + + ++NL+P++ Sbjct: 217 LA--ADERTRSKIVMRMPLIKGVNDDEDMIERTAELYRELGITQVNLLPYHNLGVGKARN 274 Query: 322 ---PGCEYLCSDQKDIVTFSECIK 342 E+ D+K + +E ++ Sbjct: 275 VGRSQREFEAPDEKRMAAIAERLQ 298 >gi|269925522|ref|YP_003322145.1| protein of unknown function DUF512 [Thermobaculum terrenum ATCC BAA-798] gi|269789182|gb|ACZ41323.1| protein of unknown function DUF512 [Thermobaculum terrenum ATCC BAA-798] Length = 487 Score = 37.6 bits (86), Expect = 3.3, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 5/105 (4%) Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRN 252 N + ++ SL I D SF T+ + R+ E+ L +S+H DLR Sbjct: 100 NREGMRDSLYIRDDDYRYSFLFGNFVTLTNLTPSDWRRLEEQRLSPLYVSVHTTDPDLRR 159 Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 L+ + + + R ++ + V+ G+ND P+ Sbjct: 160 RLLGYPKAPDILEQLARLREI-----GIQVHTQLVLCPGLNDGPQ 199 >gi|187924690|ref|YP_001896332.1| radical SAM protein [Burkholderia phytofirmans PsJN] gi|187715884|gb|ACD17108.1| Radical SAM domain protein [Burkholderia phytofirmans PsJN] Length = 356 Score = 37.6 bits (86), Expect = 3.3, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 53/129 (41%), Gaps = 8/129 (6%) Query: 238 MLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 L + L V+ LR ++P PL ++A + + +++ Y++ G+ DS Sbjct: 220 TLGMHLEVVTPALRERIMPGKASVPLSRYMEAFKSAVAVFGRGQVS-TYIL-AGLGDSAA 277 Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEYL---CSDQKDIVTFSECIKRSGYSSPIRTPR 354 L + + L + ++PF P G + + + + + ++ +R+ Sbjct: 278 AILAMSRELIELGVYPFVVPFVPISGTPLEDHPAPTPEFMKSVLQPLGGMLNAAAMRSS- 336 Query: 355 GLDILAACG 363 DI A CG Sbjct: 337 --DIKAGCG 343 >gi|169350284|ref|ZP_02867222.1| hypothetical protein CLOSPI_01028 [Clostridium spiroforme DSM 1552] gi|169293067|gb|EDS75200.1| hypothetical protein CLOSPI_01028 [Clostridium spiroforme DSM 1552] Length = 298 Score = 37.6 bits (86), Expect = 3.3, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 56/155 (36%), Gaps = 34/155 (21%) Query: 216 RITLSTSGFVPN--IARVGEEIGVMLAISLHAVSND------LRNILVPINRKYPLEMLI 267 + + T+G++ + + ++L H +N + N L+ N + ++ + Sbjct: 156 HVAIETTGYIQSDIFRELAVMFDLLLFDVKHYDTNKHYEGTKVHNELIIDNLTWAIDHGL 215 Query: 268 DACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEY 326 P ++ NDS DA+NL ++L + A K+ L+PF+ + +Y Sbjct: 216 TLLPRIP-------------VIPDFNDSLNDAINLSELLIKVKAKKVQLLPFHQFGEKKY 262 Query: 327 ------------LCSDQKDIVTFSECIKRSGYSSP 349 +D+ + + G Sbjct: 263 ELLQKEYALKNKKALYPEDLKAYQKIFLDKGIDCF 297 >gi|150400746|ref|YP_001324512.1| radical SAM domain-containing protein [Methanococcus aeolicus Nankai-3] gi|150013449|gb|ABR55900.1| Radical SAM domain protein [Methanococcus aeolicus Nankai-3] Length = 446 Score = 37.6 bits (86), Expect = 3.3, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 69/216 (31%), Gaps = 25/216 (11%) Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYT--GTQKLVRNLTAEEILLQVLLARSLLGDFPGCE 165 + ++ + V GC++ C FC G R D Sbjct: 113 LIDRGTNIIQVRGLSGCNINCPFCSVDEGKHSKTR-------------KNDYYVDMDYLV 159 Query: 166 DIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225 + ++ G K + G GEP + + + + ++ + + Sbjct: 160 EEYKKIVEFKGNKRIEAHLDGQGEPSL-YYPLPELIQNLNEINKKGDGLVSMQSNGVNLS 218 Query: 226 PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFE 285 + EE G+ +++++ ++ ++ Y + ++D + +T Sbjct: 219 YKLIDELEEAGLHRINLSINAIDEIKSRMLSGSKTYDINKILDIAEYIKNSKIHLLVT-- 276 Query: 286 YVMLKGINDSP-----RDALNLIKILKGIPAKINLI 316 ++L IND A+ L + K IN I Sbjct: 277 SLLLPNINDEEFKKVIDFAVELEQ--KNPQNIINPI 310 >gi|89894341|ref|YP_517828.1| hypothetical protein DSY1595 [Desulfitobacterium hafniense Y51] gi|123091791|sp|Q24X58|MIAB_DESHY RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase miaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase gi|89333789|dbj|BAE83384.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 447 Score = 37.6 bits (86), Expect = 3.3, Method: Composition-based stats. Identities = 38/210 (18%), Positives = 75/210 (35%), Gaps = 25/210 (11%) Query: 104 ETVYIPEKSRGTLCVSSQVGCSLTCSFCYT-GTQKLVRNLTAEEILLQVLLARSLLGDFP 162 E+V + K + V+ GC+ C++C + R+ EEIL ++ R+L+ Sbjct: 142 ESVLLAAKGKLKAYVNISYGCNNFCTYCIVPHVRGRERSRQPEEILAEI---RALVETGC 198 Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 + G + S G+ + D + D + R+ TS Sbjct: 199 REVTLLGQNVNSYGQDL---------------DRAYDFADLLKDVDSID-GLWRVRFMTS 242 Query: 223 GFVPNIARVGEEI--GVMLAISLHAVSNDLRNILVP-INRKYPLEMLIDACRHYPGLSNA 279 ++ E I G L +H + ++ +NRKY E + + Sbjct: 243 HPKDLSDKLIETIAAGTHLCEHIHLPFQAGSDEILKGMNRKYTREYYLSRIAQIKVIIPQ 302 Query: 280 RRITFEYVM-LKGINDSP-RDALNLIKILK 307 +T + ++ G + L LI+ ++ Sbjct: 303 VSLTTDIIVGFPGETEEDFEQTLELIRQVR 332 >gi|262067515|ref|ZP_06027127.1| pyruvate formate-lyase 1-activating enzyme [Fusobacterium periodonticum ATCC 33693] gi|291378778|gb|EFE86296.1| pyruvate formate-lyase 1-activating enzyme [Fusobacterium periodonticum ATCC 33693] Length = 243 Score = 37.6 bits (86), Expect = 3.4, Method: Composition-based stats. Identities = 36/241 (14%), Positives = 82/241 (34%), Gaps = 46/241 (19%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C +C+ N+ E+ ++ + + V ++ Sbjct: 27 GCPLRCLYCH--------NVDTWELKD---------KNYIYTPNEILAELNKVKAFLTGG 69 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLA 240 + GEPL + + G+ L TSG++ +V E ++L Sbjct: 70 ITASGGEPLMQASFILELFK-LCKENGI-----HTALDTSGYIFNDQAKKVLEYTDLVL- 122 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 + + + D+ L + LE ++ ++ ++ + YV++ G D +D Sbjct: 123 LDIKHIDKDMYKKLTSV----DLEPTLNFIKYLQEINK--PVWIRYVLVPGYTDDIKDLN 176 Query: 301 NLIKILKGIPA--KINLIPFNPW-------PGCEYL-----CSDQKDIVTFSECIKRSGY 346 + K + +++++PF+ +Y ++ I E K+ Sbjct: 177 DWAKFVSQFDVVRRVDILPFHQMAIYKWEKTNRDYKLKDVSTPTKEQIQKAEEIFKKYNL 236 Query: 347 S 347 Sbjct: 237 P 237 >gi|307718850|ref|YP_003874382.1| hypothetical protein STHERM_c11670 [Spirochaeta thermophila DSM 6192] gi|306532575|gb|ADN02109.1| hypothetical protein STHERM_c11670 [Spirochaeta thermophila DSM 6192] Length = 291 Score = 37.6 bits (86), Expect = 3.4, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 63/199 (31%), Gaps = 40/199 (20%) Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GCS C FC Q EI + + P I Sbjct: 86 FGCSFKCPFC----QNF-------EISQEYRTYLRTALEIPTERLIHQAKAYHS----IG 130 Query: 182 IVMMGMGEPLCNFDNVKK-SLSIASDSMGLSFSKRRITLSTSGFVPN--IARVGEEIGVM 238 I EPL +F+ V + ++ + L T+G++ + E + Sbjct: 131 IAYTYS-EPLIHFEYVMEVAVEARRH-------GLKNVLVTNGYINPEPSDELLEVVDAA 182 Query: 239 LAISLHAVSNDL-RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297 + L + +++ R + K LE ++ + + +++ G NDS Sbjct: 183 -NVDLKSFNDEFYRKEI-----KGSLEPVLAFIE---KAAKKIHVEVTTLLIPGKNDSEE 233 Query: 298 D----ALNLIKILKGIPAK 312 + A L I K IP Sbjct: 234 EVRSIARRLAGIRKDIPLH 252 >gi|78355585|ref|YP_387034.1| radical SAM domain-containing protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217990|gb|ABB37339.1| radical SAM domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 329 Score = 37.6 bits (86), Expect = 3.4, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 62/193 (32%), Gaps = 35/193 (18%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 CS+ C +C G ++ E + +++ + G + ++ Sbjct: 29 CSMDCLYCEVGRT----DILTCE-------RAPYVPAATILDELAAWRNENPGTHVDHVT 77 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRR----------ITLSTSGFVPNIARVGE 233 + G GEP + MG S R +T ST ++ Sbjct: 78 LGGSGEP------------TLNSDMGRIISGCRTILPDVPVAVLTNSTLLHRKDVRDEAA 125 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 V+L V + R L ++ + A + RI E ++ KGIN Sbjct: 126 CADVVLPSLDTLVETEFRA-LNRPEKELTASGVAAALLTF-RKEYGGRIFLEILLSKGIN 183 Query: 294 DSPRDALNLIKIL 306 DS + L + + Sbjct: 184 DSQENLALLRQFV 196 >gi|307595524|ref|YP_003901841.1| Radical SAM domain-containing protein [Vulcanisaeta distributa DSM 14429] gi|307550725|gb|ADN50790.1| Radical SAM domain protein [Vulcanisaeta distributa DSM 14429] Length = 310 Score = 37.6 bits (86), Expect = 3.4, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 74/190 (38%), Gaps = 25/190 (13%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+ C +C R++ L +P + I+ + I + R + Sbjct: 28 CNFNCIYC---QLGRTRHV-----------INDLRMFYPPEDIIKELEIATRTRDYDYLT 73 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG---FVPNIARVGEEIGVMLA 240 +G GEP + + K + A ++ + + + T+G N+ E+ V + Sbjct: 74 FIGDGEPTL-YAGLGKLIQWARNNQ-----DKPLAILTNGAKLIDENVRSWLSELNV-VK 126 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 +S A S ++ +R+ + I+ + + + + I E ++++G+ND+ + Sbjct: 127 VSTDAGSEKTFRLINRPHREITFDRFIEGIERFREIFSGQ-IWTEVMLVQGVNDNEDEMK 185 Query: 301 NLIKILKGIP 310 + ++ Sbjct: 186 RIGNTMRRYK 195 >gi|288931480|ref|YP_003435540.1| radical SAM protein [Ferroglobus placidus DSM 10642] gi|288893728|gb|ADC65265.1| Radical SAM domain protein [Ferroglobus placidus DSM 10642] Length = 382 Score = 37.6 bits (86), Expect = 3.4, Method: Composition-based stats. Identities = 36/189 (19%), Positives = 67/189 (35%), Gaps = 19/189 (10%) Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167 I ++ L V GC+L C FC + + + I+ P Sbjct: 77 IIDRGTNLLQVRPITGCNLNCIFCSVDEGRSSKTKKTDFIVD------------PDYLLE 124 Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227 E I + + + G EP+ + +K+ L ++ S + + + Sbjct: 125 ELRKICEFKGRGVEVHIDGQAEPML-YPYMKQFLEGVAEIK--EVSVVSMQTNGTLISEK 181 Query: 228 IARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYV 287 + E I +S+ A+ +L N + KYPL+ +++A + + V Sbjct: 182 VVEEFEGILDRFNVSISALDQELANKIY--GTKYPLKKVLEAVEAIAN--SKIDLLIAPV 237 Query: 288 MLKGINDSP 296 L GIND Sbjct: 238 WLPGINDEE 246 >gi|317046674|ref|YP_004114322.1| lysine 2,3-aminomutase YodO family protein [Pantoea sp. At-9b] gi|316948291|gb|ADU67766.1| lysine 2,3-aminomutase YodO family protein [Pantoea sp. At-9b] Length = 342 Score = 37.6 bits (86), Expect = 3.4, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 72/224 (32%), Gaps = 57/224 (25%) Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY------TGTQKLVRNLTAEEI 147 + + ++R L V GC++ C +C+ Q RN A Sbjct: 92 DPLDEQSSVVPGLLHKYRNRALLLVKG--GCAVNCRYCFRRHFPYQDNQGNKRNWQA--- 146 Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDN----VKKSLSI 203 A + D P ++ I+ G G+PL D+ + ++L Sbjct: 147 ------AIDYIADHP---------------ELDEIIFSG-GDPLMAKDHELAWLIEALEK 184 Query: 204 ASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPL 263 L R+ + I + L + + R ++ ++ Sbjct: 185 LPHLKRLRI-HSRLPV--------------VIPARITEGLCQLLANTRLQVLLVSHINHA 229 Query: 264 EMLIDACRHYPGLSNARRITF--EYVMLKGINDSPRDALNLIKI 305 + + D R+ + +T + V+L+G+ND A L + Sbjct: 230 QEIDDELRYGMQMLKRAGVTLLNQSVLLRGVNDK---AQQLADL 270 >gi|257126689|ref|YP_003164803.1| glycyl-radical enzyme activating protein family [Leptotrichia buccalis C-1013-b] gi|257050628|gb|ACV39812.1| glycyl-radical enzyme activating protein family [Leptotrichia buccalis C-1013-b] Length = 272 Score = 37.6 bits (86), Expect = 3.5, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 42/108 (38%), Gaps = 10/108 (9%) Query: 223 GFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR-R 281 G + ++ + + + + N+ ++KY ++ LS R Sbjct: 137 GNYKDFEKLAKLTD-TILFDIKHMDNEK-------HKKYTAVSNEIILKNLTKLSEWHKR 188 Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIPAK-INLIPFNPWPGCEYLC 328 I + +KGIND ++ K LK + +N++P++ +Y Sbjct: 189 IIMRFPFIKGINDDEKNIHETAKFLKKLNLLEVNILPYHTMGLEKYKK 236 >gi|254372685|ref|ZP_04988174.1| hypothetical protein FTCG_00250 [Francisella tularensis subsp. novicida GA99-3549] gi|151570412|gb|EDN36066.1| hypothetical protein FTCG_00250 [Francisella novicida GA99-3549] Length = 328 Score = 37.6 bits (86), Expect = 3.5, Method: Composition-based stats. Identities = 37/215 (17%), Positives = 71/215 (33%), Gaps = 44/215 (20%) Query: 110 EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169 K G + + +Q C++ C +C+ N+ PG +D Sbjct: 97 HKYHGRVLLIAQTSCAVHCRYCFRKEFDYKENI-------------------PGRKDWLQ 137 Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKS----LSIASDSMGLSF-SKRRITLSTSGF 224 + V++ G+PL N D + + + + L S+ + L Sbjct: 138 AFEYIANDQSIEEVILSGGDPLLNNDEILEFFIENIQRIAHIKRLRIHSRIPVVLPERMT 197 Query: 225 VPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283 + + E + +L I ++ + + N L+ + + I Sbjct: 198 TKLLKILSEHRLDTVLVIHVNHPNE------LDGNVSKVLKEI---------HKHGIIIL 242 Query: 284 FEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF 318 + +LK IND L L I AK+ IP+ Sbjct: 243 NQSTLLKDINDDANVLYALSTKL--INAKV--IPY 273 >gi|56416128|ref|YP_153203.1| hypothetical protein SPA4150 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197365054|ref|YP_002144691.1| hypothetical protein SSPA3854 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56130385|gb|AAV79891.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197096531|emb|CAR62140.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 342 Score = 37.6 bits (86), Expect = 3.5, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 63/205 (30%), Gaps = 45/205 (21%) Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166 ++R L V GC++ C +C R+ E Sbjct: 105 LHKYQNRALLLVKG--GCAVNCRYC------FRRHFPYAE------------NQGNKRNW 144 Query: 167 IEGMVIPSVGRKISNIVMMGMGEPL----CNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222 + +V ++ I+ G G+PL D + L L Sbjct: 145 TVALEYIAVHPELDEIIFSG-GDPLMAKDHELDWLLTQLEAIKHVKRLRI---------- 193 Query: 223 GFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI 282 +R+ I + L A + R ++ +N + +A + + Sbjct: 194 -----HSRLPIVIPARITDELVARFDQSRLQILLVNHINHANEVDEAFCLAMKKLHHVGV 248 Query: 283 TF--EYVMLKGINDSPRDALNLIKI 305 T + V+L+G+ND+ A L + Sbjct: 249 TLLNQSVLLRGVNDN---AQTLANL 270 >gi|95929282|ref|ZP_01312026.1| Radical SAM [Desulfuromonas acetoxidans DSM 684] gi|95134780|gb|EAT16435.1| Radical SAM [Desulfuromonas acetoxidans DSM 684] Length = 287 Score = 37.6 bits (86), Expect = 3.5, Method: Composition-based stats. Identities = 40/241 (16%), Positives = 81/241 (33%), Gaps = 30/241 (12%) Query: 110 EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169 K+ + + GC++ C FC V + +R L + Sbjct: 21 HKNSARIHLPVAPGCNIKCGFCE-RKFDCVNESRPG------VTSRVLTPEQALERLELV 73 Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKS--LSIASDSMGLSFSKRRITLSTSGFVPN 227 + P G K+ + + G G+PL N + K + A + L S + L + + Sbjct: 74 LRHPVAGPKMKVVGIAGPGDPLANENTFKTFDLVRAAHPELTLCLSTNGLMLPEN--MDR 131 Query: 228 IARVG-EEIGVMLAISLHAVSNDLRNILVPINRK--------YPLEMLIDACRHYPGLSN 278 I +G + V + + + +K + L+ ++ Sbjct: 132 IKDLGIHSLTVTMNALSAQSGAQVYEWIHYQGKKLQGEAAAGFLLDKQLEGVE--LAAKA 189 Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIPA-KINLIPFNPWPGCEY---LCSDQKDI 334 + +V + GIND L+L + + A +N+IP P ++ + +I Sbjct: 190 GMLVKINHVYMPGINDHET--LDLAVTARKLGATMMNIIPL--IPLGKFAGMEQPSKDEI 245 Query: 335 V 335 Sbjct: 246 D 246 >gi|297197550|ref|ZP_06914947.1| formate acetyltransferase [Streptomyces sviceus ATCC 29083] gi|297146770|gb|EFH28330.1| formate acetyltransferase [Streptomyces sviceus ATCC 29083] Length = 1138 Score = 37.6 bits (86), Expect = 3.5, Method: Composition-based stats. Identities = 12/82 (14%), Positives = 29/82 (35%), Gaps = 14/82 (17%) Query: 279 ARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEYLC-------- 328 R+ YV++ G D +L + G+ + +++++PF+ +Y Sbjct: 1054 GVRMWIRYVLVPGWTDDAESVESLADFVAGLRSVDRVDVLPFHKLGASKYEALGLPFPLR 1113 Query: 329 ----SDQKDIVTFSECIKRSGY 346 + + E + G Sbjct: 1114 DTPTPARDAVERVRERFRAHGL 1135 >gi|57864872|gb|AAW57046.1| nitrogen fixation protein B [cyanobacterium endosymbiont of Rhopalodia gibba] Length = 483 Score = 37.6 bits (86), Expect = 3.5, Method: Composition-based stats. Identities = 36/239 (15%), Positives = 90/239 (37%), Gaps = 42/239 (17%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C++C N + ++ +VL P + +VI +++ + Sbjct: 72 CNIQCNYCNRKYD--CANESRPGVVSEVLT--------PEEAAHKALVIAGKIPQMTVLG 121 Query: 184 MMGMGEPLCNFDNVKKSLSIASD---SMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240 + G G+PL N + ++ + ++ + L S + L+ ++ I + + V L Sbjct: 122 IAGPGDPLANPKHTFRTFELVAEQAPDIKLCLSSNGLMLTE--YIDKIKELKID-HVTLT 178 Query: 241 ISLHAVSNDLRNILVPIN----RKYP--------LEMLIDACRHYPGLSNARRITFEYVM 288 I++ V + + P ++Y LE +++ ++ VM Sbjct: 179 INM--VDPKIGEKIYPWVRYNRKRYKGIEGVKILLEKQMESLDALREADILCKVN--SVM 234 Query: 289 LKGINDSPRDALNLIKILKGIPAKI-NLIPFNPWPG-------CEYLCSDQKDIVTFSE 339 + G+ND + + ++++ A + N++P P K++ + Sbjct: 235 IPGVND--QHLAEVNEVIRAKGAFLHNIMPLISAPEHGTHFGLTGQRGPSPKELKAVQD 291 >gi|125973026|ref|YP_001036936.1| pyruvate formate-lyase activating enzyme [Clostridium thermocellum ATCC 27405] gi|256004823|ref|ZP_05429798.1| pyruvate formate-lyase activating enzyme [Clostridium thermocellum DSM 2360] gi|281417236|ref|ZP_06248256.1| pyruvate formate-lyase activating enzyme [Clostridium thermocellum JW20] gi|125713251|gb|ABN51743.1| pyruvate formate-lyase activating enzyme [Clostridium thermocellum ATCC 27405] gi|255991273|gb|EEU01380.1| pyruvate formate-lyase activating enzyme [Clostridium thermocellum DSM 2360] gi|281408638|gb|EFB38896.1| pyruvate formate-lyase activating enzyme [Clostridium thermocellum JW20] gi|316940739|gb|ADU74773.1| pyruvate formate-lyase activating enzyme [Clostridium thermocellum DSM 1313] Length = 238 Score = 37.6 bits (86), Expect = 3.6, Method: Composition-based stats. Identities = 35/235 (14%), Positives = 72/235 (30%), Gaps = 44/235 (18%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C +C+ R+ + P E M + Sbjct: 29 GCPLRCIYCH------NRDT---------WDVNAGSEYTPRQVIDEMMKYIDYIKVSGGG 73 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF--VPNIARVGEEIGVMLA 240 + + GEP+ D V + +A + L T+GF + + R+ + ++L Sbjct: 74 ITVTGGEPVLQADFVAEVFRLAKEQ------GVHTALDTNGFADIEKVERLIKYTDLVL- 126 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 + + D I+ ++ I Y I YV++ G D D Sbjct: 127 LDIKHAREDKHKIITGVSN-----EKIKRFALYLS-DQGVPIWIRYVLVPGYTDDEDDLK 180 Query: 301 NLIKILKGIPA--KINLIPFNPWPGCEYLC------------SDQKDIVTFSECI 341 +K + KI ++P++ ++ +++ + Sbjct: 181 MAADFIKKLKTVEKIEVLPYHNMGAYKWEKLGQKYMLEGVKGPSAQEVEKAKRIL 235 >gi|171780238|ref|ZP_02921142.1| hypothetical protein STRINF_02026 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281586|gb|EDT47021.1| hypothetical protein STRINF_02026 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 262 Score = 37.6 bits (86), Expect = 3.6, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 76/237 (32%), Gaps = 51/237 (21%) Query: 123 GCSLTCSFCYT-GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC + C +C+ T L N + E + VL F G Sbjct: 35 GCKMRCQYCHNPDTWALETNNSRERTVDDVLAEALRYRHFWGENG--------------G 80 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAI 241 I + G GE + + V + + + L TL T GF + + Sbjct: 81 ITVSG-GEAMLQIEFVTA---LFTKAKELGI---HCTLDTCGFT-----FRDTPEYHKIV 128 Query: 242 S-LHAVSNDLRNILVPINRKYPL------EMLIDACRHYPGLSNARRITFEYVMLKGIND 294 L AV++ + L IN K + I A Y + +V++ G+ D Sbjct: 129 DKLLAVTDLVLLDLKEINPKQHIVVTRQPNTNILAFARYLS-DKGVPVWIRHVLVPGLTD 187 Query: 295 SPRDALNLIKI---LKGIPAKINLIPFNPWPGCEY------------LCSDQKDIVT 336 D + L K LK + K ++P++ ++ ++ + Sbjct: 188 FDEDLIELGKFVETLKNVD-KFEILPYHTLGEFKWRELGIPYTLEGVKPPTRERVQN 243 >gi|306843858|ref|ZP_07476453.1| molybdenum cofactor biosynthesis protein A [Brucella sp. BO1] gi|306275613|gb|EFM57337.1| molybdenum cofactor biosynthesis protein A [Brucella sp. BO1] Length = 344 Score = 37.6 bits (86), Expect = 3.6, Method: Composition-based stats. Identities = 38/217 (17%), Positives = 72/217 (33%), Gaps = 43/217 (19%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C C++C + D E+++ + + + + + Sbjct: 35 CDFRCTYCMAEHMTFLP-----------------KKDLLTLEELDRLCSVFIEKGVRKLR 77 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKR-------RITLSTSG--FVPNIARVGEE 234 + G GEPL V+K +G + S+ +TL+T+G + + Sbjct: 78 LTG-GEPL-----VRK---NIMHLIG-NLSRHLKSGALDELTLTTNGSQLARFAGELADC 127 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 + +SL ++ + + + IDA R + V LK ND Sbjct: 128 GVRRINVSLDTLNPEKFRTITRWGDLSRVLEGIDAAR-----KAGIHVKINAVALKDFND 182 Query: 295 SPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 + LI+ G + LI P E+ +DQ Sbjct: 183 AE--IPELIRWAHGRGMDVTLIETMPMGEIEFDRTDQ 217 >gi|300870181|ref|YP_003785052.1| MiaB-like tRNA modifying enzyme [Brachyspira pilosicoli 95/1000] gi|300687880|gb|ADK30551.1| MiaB-like tRNA modifying enzyme [Brachyspira pilosicoli 95/1000] Length = 415 Score = 37.6 bits (86), Expect = 3.6, Method: Composition-based stats. Identities = 36/204 (17%), Positives = 68/204 (33%), Gaps = 29/204 (14%) Query: 118 VSSQVGCSLTCSFCYTGT-QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVG 176 + Q GC + CS+C + ++L +I + +A Sbjct: 131 LKIQDGCEVFCSYCIVSRVRGKHKSLEPNKIYEAIKIANDYNY----------------- 173 Query: 177 RKISNIVMMGMGEPLCNFDNVKKSLSIAS----DSMGLSFSKRRITLSTSGFVPNIARVG 232 IV+ G+ NF+N K I S R ++ F + + Sbjct: 174 ---KEIVLTGLNLGSYNFNNEIKFADILKNILEHSSKYGIRIRLSSVEPIYFDDELINLF 230 Query: 233 EEIGVMLAISLHAVSNDLRNILVP-INRKYPLEMLIDACRHYPGLSNARRITFEYVM--L 289 + V L H N ++ +NR+Y E + + ++ I+ + ++ Sbjct: 231 KNKDV-LCPHAHIPLQSGSNKILKLMNRRYTREEYLTSIEKLYKVNPNMAISTDVMVGFP 289 Query: 290 KGINDSPRDALNLIKILKGIPAKI 313 + ND D NL + K I + Sbjct: 290 EEENDDFNDTYNLCEKSKFIKMHV 313 >gi|315221939|ref|ZP_07863850.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus anginosus F0211] gi|315188905|gb|EFU22609.1| pyruvate formate-lyase 1-activating enzyme [Streptococcus anginosus F0211] Length = 265 Score = 37.6 bits (86), Expect = 3.7, Method: Composition-based stats. Identities = 37/215 (17%), Positives = 74/215 (34%), Gaps = 37/215 (17%) Query: 123 GCSLTCSFC-----YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C + R T E+IL + L R G G Sbjct: 37 GCKMRCQYCHNPDTWAMETNNSRERTVEDILQEALRYRGFWGKKGG-------------- 82 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLS--FSKRRITL-STSGFVPNIARVGEE 234 I + G GE L N +L + +G+ + +T ++ R+ E Sbjct: 83 ----ITVSG-GEALLQI-NFVTALFTKAKELGIHCTLDTCAMPFRNTPEYLKVFDRLLEV 136 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 ++L + + +++ + K LE C Y + +V++ + D Sbjct: 137 TDLVL-LDIKEINDAQHRFVTGHTNKNILE-----CAKYLS-DKGVPMWIRHVLVPTLTD 189 Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327 D L + +K + K ++P++ ++ Sbjct: 190 RDDDLKELGEFVKTLKTVDKFEVLPYHTMGEFKWR 224 >gi|254488854|ref|ZP_05102059.1| elongator protein 3/MiaB/NifB [Roseobacter sp. GAI101] gi|214045723|gb|EEB86361.1| elongator protein 3/MiaB/NifB [Roseobacter sp. GAI101] Length = 374 Score = 37.6 bits (86), Expect = 3.7, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 53/141 (37%), Gaps = 14/141 (9%) Query: 229 ARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVM 288 R+ + L + L V+ LR ++P + LE D+ + +++ Y++ Sbjct: 219 RRMKDAGIDSLGMHLEVVTPALREQIMPGKAQVSLEKYFDSFAAAVEVFGWGQVS-TYIL 277 Query: 289 LKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSS 348 G+ D+ L++ + L I ++PF P G S F G Sbjct: 278 -AGLGDTQEAILSICERLTAIGVYPFVVPFVPVTGTPLE-SHPAPTSAFM-----HGVLG 330 Query: 349 PI------RTPRGLDILAACG 363 P+ R R DI A CG Sbjct: 331 PLSQMIVDRGMRAEDIKAGCG 351 >gi|254302663|ref|ZP_04970021.1| [formate-C-acetyltransferase]-activating enzyme [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322855|gb|EDK88105.1| [formate-C-acetyltransferase]-activating enzyme [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 243 Score = 37.6 bits (86), Expect = 3.7, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 80/214 (37%), Gaps = 34/214 (15%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L C +C+ N+ E+ ++ + + V ++ Sbjct: 27 GCPLRCLYCH--------NVDTWELKD---------KNYIYTPEEILAELNKVRAFLTGG 69 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLA 240 + GEPL + + G+ L TSG++ +V E ++L Sbjct: 70 ITASGGEPLFQASFILELFK-LCKENGI-----HTALDTSGYIFNDQAKKVLEYTDLVL- 122 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300 + + + D+ L + LE ++ ++ ++ + YV++ G D +D Sbjct: 123 LDIKHIDKDMYKKLTSV----DLESTLNFIKYLQEINK--PVWIRYVLVPGYTDDIKDLN 176 Query: 301 NLIKILKGIPA--KINLIPFNPWPGCEYLCSDQK 332 + K + +++++PF+ ++ ++++ Sbjct: 177 DWAKFVSQFDVVKRVDILPFHQMAIYKWEKTNRE 210 >gi|315650922|ref|ZP_07903963.1| molybdenum cofactor biosynthesis protein A [Eubacterium saburreum DSM 3986] gi|315486836|gb|EFU77177.1| molybdenum cofactor biosynthesis protein A [Eubacterium saburreum DSM 3986] Length = 323 Score = 37.6 bits (86), Expect = 3.7, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 67/183 (36%), Gaps = 32/183 (17%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+ C++C T+K+ L+ +EI QV A S G I+ Sbjct: 20 CNFRCTYCMPETKKVDDTLSLDEIY-QVAFAASKCG-------------------ITKFK 59 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 + G GEPL D + + D S + IT++T+GF + + + + S+ Sbjct: 60 ITG-GEPLV-RDGIVDFIRRLHDID----SVKDITMTTNGF--YLYKYAKSLADAGLSSV 111 Query: 244 HAVSNDLRNILV-PINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN-DSPRDALN 301 + + L+ I L ++ V+ +G+N D D + Sbjct: 112 NISLDSLKKERFIKITGVDALSDVVKGINE--AKRAGLSTKINTVLQRGVNEDELFDIIG 169 Query: 302 LIK 304 L K Sbjct: 170 LAK 172 >gi|154151787|ref|YP_001405405.1| radical SAM domain-containing protein [Candidatus Methanoregula boonei 6A8] gi|154000339|gb|ABS56762.1| Radical SAM domain protein [Methanoregula boonei 6A8] Length = 332 Score = 37.6 bits (86), Expect = 3.7, Method: Composition-based stats. Identities = 58/253 (22%), Positives = 83/253 (32%), Gaps = 56/253 (22%) Query: 112 SRGT--LCVSSQVGCSLTCSFCYTGTQ--KLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167 RGT L V GC+L C FC R + E L +L A + F G Sbjct: 24 DRGTSLLQVRPSCGCNLNCPFCSVDAGPCSKTRATSYEVELDYLLSAVEEIAPFKGTGVE 83 Query: 168 EGMVIPSVGRKISNIVMMGMGEPL--CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV 225 + P GEPL + +L + ++L T+G + Sbjct: 84 CHIDSP--------------GEPLMYARLPELVAALKAID-------AVSTVSLQTNGTL 122 Query: 226 ---PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRI 282 IA + + + +SLHA+ L L + +E + +A R S I Sbjct: 123 LDERKIAALADAGLDRMNLSLHALDPALAREL-AGVDWFDIEKVTEAARAVAASSMDLLI 181 Query: 283 TFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIK 342 Y + GIND +I K LI F G I F Sbjct: 182 APVY--MPGIND--------AEIPK-------LIAFARECGAG-KRFPPLGIQKFERY-- 221 Query: 343 RSGYSSPIRTPRG 355 + G RTP+G Sbjct: 222 KYG-----RTPKG 229 >gi|14141682|dbj|BAB55635.1| pyruvate formate-lyase activating enzyme [Streptococcus bovis] Length = 262 Score = 37.6 bits (86), Expect = 3.7, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 76/237 (32%), Gaps = 51/237 (21%) Query: 123 GCSLTCSFCYT-GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 GC + C +C+ T L N + E + VL F G Sbjct: 35 GCKMRCQYCHNPDTWALETNNSRERTVDDVLAEALRYRHFWGENG--------------G 80 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM-LA 240 I + G GE + + V + + + L TL T GF + + Sbjct: 81 ITVSG-GEAMLQIEFVTA---LFTKAKELGI---HCTLDTCGFT-----FRDTPEYHEIV 128 Query: 241 ISLHAVSNDLRNILVPINRKYPL------EMLIDACRHYPGLSNARRITFEYVMLKGIND 294 L AV++ + L IN K + I A Y + +V++ G+ D Sbjct: 129 DKLLAVTDLVLLDLKEINPKQHIVVTRQPNTNILAFARYLS-DKGVPVWIRHVLVPGLTD 187 Query: 295 SPRDALNLIKI---LKGIPAKINLIPFNPWPGCEY------------LCSDQKDIVT 336 D + L K LK + K ++P++ ++ ++ + Sbjct: 188 FDEDLIELGKFVETLKNVD-KFEILPYHTLGEFKWRELGIPYTLEGVKPPTRERVQN 243 >gi|170717241|ref|YP_001784359.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus somnus 2336] gi|168825370|gb|ACA30741.1| pyruvate formate-lyase activating enzyme [Haemophilus somnus 2336] Length = 246 Score = 37.6 bits (86), Expect = 3.7, Method: Composition-based stats. Identities = 35/248 (14%), Positives = 79/248 (31%), Gaps = 54/248 (21%) Query: 123 GCSLTCSFCYTGT-----QKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGR 177 GC + C +C+ ++ E+++ +V+ R + G G Sbjct: 29 GCLMRCKYCHNRDTWDLHDGKE--ISVEDLMKEVVTYRHFMNATGGGVTASGGEAVLQAE 86 Query: 178 KISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGV 237 + + E S L T+GFV + V +E+ Sbjct: 87 FVRDWFKACKAE---------------------GISTC---LDTNGFVRHYDHVIDELLD 122 Query: 238 MLAISLHAV---SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 + + L + ++ + L+ + K LE Y N + YV++ G D Sbjct: 123 VTDLVLLDLKQLNDKVHQNLIGVPNKRTLE-----FAKYLQKRNQ-KTWIRYVVVPGYTD 176 Query: 295 SPRDALNLIKILKGIPAK--INLIPFNPWPGCEYL------------CSDQKDIVTFSEC 340 + D L + ++ + + L+P++ ++ + + Sbjct: 177 ADEDIHLLGQFIQNMSNIEQVELLPYHQLGAHKWKTMGEQYELEDVVPPTKDSLEHIKSI 236 Query: 341 IKRSGYSS 348 I+ G++ Sbjct: 237 IESYGHTV 244 >gi|168187740|ref|ZP_02622375.1| pyruvate formate-lyase 1-activating enzyme [Clostridium botulinum C str. Eklund] gi|169294396|gb|EDS76529.1| pyruvate formate-lyase 1-activating enzyme [Clostridium botulinum C str. Eklund] Length = 235 Score = 37.6 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 37/213 (17%), Positives = 72/213 (33%), Gaps = 42/213 (19%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC L CSFC+ P + + + + Sbjct: 28 GCPLRCSFCHNPD---------------TWNFNIGDKITPEKLVKKIIRFKPYFKNNGGV 72 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGF----VPNIARVGEEIGVM 238 G GE L + + K+L + ++ + TSG+ + I + + Sbjct: 73 TFSG-GESLMQPEFLLKTLKLCKENN------IHTAIDTSGYYSDHLNEILKFTDL---- 121 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSP 296 + + + V + N K + ++ + + N R+ +V++ I DS Sbjct: 122 VLLDIKHVDD--------FNFKALTGVSMEKLLSFIEILNNSSCRVWIRHVVVPKITDSI 173 Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEYL 327 +L KI+K I KI L+P++ +Y Sbjct: 174 EHIHSLKKIIKKINNVDKIELLPYHTLGVNKYK 206 >gi|77411520|ref|ZP_00787864.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae CJB111] gi|77162446|gb|EAO73413.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae CJB111] Length = 262 Score = 37.6 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 34/238 (14%), Positives = 71/238 (29%), Gaps = 41/238 (17%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C +C+ N E+ + E + K I Sbjct: 35 GCKMRCQYCH--------NPDTWEM-----ETNNSKERTVEDVLKEALRYKHFWGKDGGI 81 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML--A 240 + G GE + D +L I + +G+ TL T GF R E V+L Sbjct: 82 TVSG-GEAMLQID-FITALFIEAKKLGI-----HTTLDTCGFA---YRATPEYHVILEKL 131 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL--SNARRITFEYVMLKGINDSPRD 298 + + + + P K + + +V++ G+ D Sbjct: 132 LDVTDLVLLDLKEIDPEQHKIVTRQSNKNILQFARYLSDRGTPVWIRHVLVPGLTDIDDH 191 Query: 299 ALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIK 342 L + ++ + K ++P++ ++ + + + +K Sbjct: 192 LKRLGEFVQTLDNVDKFEVLPYHTMGEFKWRELGIPYPLAGVKPPTPERVKNAKDIMK 249 >gi|300087155|ref|YP_003757677.1| radical SAM domain-containing protein [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299526888|gb|ADJ25356.1| Radical SAM domain protein [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 487 Score = 37.6 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 35/111 (31%), Gaps = 22/111 (19%) Query: 63 LLNQHFSIIYPEIVD----EKISCDGTR--------KWLLRFPARCIGGPVEIETVYIPE 110 L +H P + + + DG + K L P I Sbjct: 126 KLVEHLETGSPALSEIPGLAYRAQDGIQQNPASQELKNLDELPDPAWH--------LIDV 177 Query: 111 KSRGTLCVSSQVGCSLTCSFCYTGT--QKLVRNLTAEEILLQVLLARSLLG 159 K +++ GC C+FCY + +AE I+ QV + G Sbjct: 178 KKYWAASLNTSRGCPFRCTFCYNSAFHAGYRGDFSAERIVSQVEHLQKEYG 228 >gi|257063931|ref|YP_003143603.1| KamA family protein [Slackia heliotrinireducens DSM 20476] gi|256791584|gb|ACV22254.1| KamA family protein [Slackia heliotrinireducens DSM 20476] Length = 407 Score = 37.6 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 41/242 (16%), Positives = 84/242 (34%), Gaps = 52/242 (21%) Query: 90 LRFPARCIGGPVEIETVY--IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEI 147 L F TV + K T V S C++ C C+ + R+ A+E Sbjct: 79 LDFSGLADTSGESKSTVLPGLQHKYAETALVLSTNQCAMYCRHCFRRRL-VGRD--ADET 135 Query: 148 LLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVK----KSLSI 203 + + + D +I+N+++ G G+ L N + ++L+ Sbjct: 136 VRNIDAVADYIRDH---------------EEITNVLISG-GDALMNSNETLFRYLEALAP 179 Query: 204 ASDSMGLSFS-------KRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVP 256 + +RIT G + ++ + + + + + + P Sbjct: 180 IPHLKTIRLGTRIPVVLPQRIT-DDPGLIDLLSGFNHIVQLHVVTQFNHPN-----EITP 233 Query: 257 INRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLI 316 DA R L + + V+LKG+ND+P L +++ + I ++ Sbjct: 234 --------ESRDAIRILLEL--GIPVRNQTVLLKGVNDTPE---TLARLMDDL-VGIGIV 279 Query: 317 PF 318 P+ Sbjct: 280 PY 281 >gi|113461290|ref|YP_719359.1| pyruvate formate lyase-activating enzyme 1 [Haemophilus somnus 129PT] gi|112823333|gb|ABI25422.1| pyruvate formate-lyase 1 activating enzyme [Haemophilus somnus 129PT] Length = 246 Score = 37.6 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 35/243 (14%), Positives = 74/243 (30%), Gaps = 44/243 (18%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C +C+ R+ E + Sbjct: 29 GCLMRCKYCH------NRDT---------WDLHDGKEISVEDLMKEVVTYRHFMNATGGG 73 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAIS 242 V GE + + V+ S L T+GFV + V +E+ + + Sbjct: 74 VTASGGEAILQAEFVRD---WFKACKAEGISTC---LDTNGFVRHYDHVIDELLDVTDLV 127 Query: 243 LHAV---SNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 L + ++ + L+ + K LE Y N + YV++ G D+ D Sbjct: 128 LLDLKQLNDKVHQNLIGVPNKRTLE-----FAKYLQKRNQ-KTWIRYVVVPGYTDADEDI 181 Query: 300 LNLIKILKGIPAK--INLIPFNPWPGCEYL------------CSDQKDIVTFSECIKRSG 345 L + ++ + + L+P++ ++ + + I+ G Sbjct: 182 HLLGQFIQNMSNIEQVELLPYHQLGAHKWKTMGEQYELEDVVPPTKDSLEHIKSIIESYG 241 Query: 346 YSS 348 ++ Sbjct: 242 HTV 244 >gi|311896173|dbj|BAJ28581.1| putative pyruvate formate-lyase-activating enzyme [Kitasatospora setae KM-6054] Length = 256 Score = 37.6 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 38/244 (15%), Positives = 80/244 (32%), Gaps = 45/244 (18%) Query: 122 VGCSLTCSFCYTGTQKLVRNLT---AEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRK 178 GC L C +C+ +RN T A+E++ + + + G Sbjct: 40 AGCPLNCLYCHNPDTMRMRNGTRTGADEVVAE------------ASKYTAFIHAAGGGAT 87 Query: 179 ISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238 +S GEPL D + +GL L TSGF+ R +E+ Sbjct: 88 VSG------GEPLLQPDFAGELFHRFKHELGL-----HTALDTSGFLGA--RASDELLAD 134 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 + + L V + L L+ + R L + + +V++ G+ D + Sbjct: 135 VDLVLLDVKSWD-QGLYRKVTGQRLDPTLAFARRLADL--GKEVWVRFVLVPGLTDPAEN 191 Query: 299 ALNLIKILKGIP--AKINLIPFNPWPGCEYLC------------SDQKDIVTFSECIKRS 344 + + ++++++PF+ ++ + + + Sbjct: 192 VDGVAAFAASLGNVSRVDVLPFHKLGQAKWEALGRDFTLADTPTPSPEQLRAARDAFAAH 251 Query: 345 GYSS 348 G + Sbjct: 252 GLHA 255 >gi|239904846|ref|YP_002951584.1| putative response regulator receiver protein [Desulfovibrio magneticus RS-1] gi|239794709|dbj|BAH73698.1| putative response regulator receiver protein [Desulfovibrio magneticus RS-1] Length = 801 Score = 37.6 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 6/83 (7%) Query: 194 FDNVKKSLSIASD--SMGLSFSKRRITLSTS-GFV--PNIARVGEEIGVMLAISLHAVSN 248 + V + + D S S + +S S G V P I EE+ I+LH + Sbjct: 468 YREVVRIIKRIRDAMSEVFPLSGHDVHVSASMGIVVSPAIYEKPEELLRNANIALHRAKD 527 Query: 249 DLRNILVPINRKYPLEMLIDACR 271 + RN N + LE I Sbjct: 528 EGRNRFKVFNTRM-LEDAIRLMD 549 >gi|162147685|ref|YP_001602146.1| molybdenum cofactor biosynthesis protein A [Gluconacetobacter diazotrophicus PAl 5] gi|161786262|emb|CAP55844.1| putative molybdenum cofactor biosynthesis protein A [Gluconacetobacter diazotrophicus PAl 5] Length = 338 Score = 37.6 bits (86), Expect = 3.9, Method: Composition-based stats. Identities = 43/213 (20%), Positives = 74/213 (34%), Gaps = 31/213 (14%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C + C +C + L EIL E++E + + ++ I Sbjct: 24 CDMRCVYCMSEAMSF---LPKAEILS--------------FEEMERLCAAFIRNGVTRIR 66 Query: 184 MMGMGEPL--CNFDNVKKSLSI---ASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238 + G GEPL + D +L +D G + +T + S + + Sbjct: 67 VTG-GEPLVRRDIDGFFAALGTWLHRTDGDG-HLDELTLTTNGSHLATHADALARAGVRR 124 Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 + ISL + + R + R+ LE ++ R + I V + G+ND D Sbjct: 125 VNISLDS-LDSKRFQRI--TRRGRLEQTLEGIR--AARAAGLAIRINTVAMAGVNDDEFD 179 Query: 299 ALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 L+ I A + LI P SD+ Sbjct: 180 T--LLAWCGEIGADLCLIETMPMGDTGEDRSDR 210 >gi|291278632|ref|YP_003495467.1| hypothetical protein DEFDS_0200 [Deferribacter desulfuricans SSM1] gi|290753334|dbj|BAI79711.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 432 Score = 37.6 bits (86), Expect = 3.9, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 5/70 (7%) Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPF-N 319 Y L+ ++ + ++ Y+M+ GIND + LI L K+ LI N Sbjct: 314 YKLDDVLKSIE--LANKYNVYVSLNYLMMPGINDRESEINALIDFLSAY--KVELIQLRN 369 Query: 320 PWPGCEYLCS 329 +YL S Sbjct: 370 LNIDPDYLFS 379 >gi|320094018|ref|ZP_08025843.1| tRNA-I(6)A37 thiotransferase [Actinomyces sp. oral taxon 178 str. F0338] gi|319979062|gb|EFW10580.1| tRNA-I(6)A37 thiotransferase [Actinomyces sp. oral taxon 178 str. F0338] Length = 508 Score = 37.2 bits (85), Expect = 3.9, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 9/78 (11%) Query: 89 LLRFPARCIGGPVEIE--------TVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQ-KLV 139 LLR VEIE T+ +S VS VGC+ TC+FC Sbjct: 133 LLRRAEHNRAAAVEIEESLKVFPSTLPTRRESVYAAWVSISVGCNNTCTFCIVPRLRGKE 192 Query: 140 RNLTAEEILLQVLLARSL 157 R+ EIL +V S Sbjct: 193 RDRRPGEILAEVEAVASQ 210 >gi|76787669|ref|YP_330039.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae A909] gi|76562726|gb|ABA45310.1| pyruvate formate-lyase-activating enzyme [Streptococcus agalactiae A909] Length = 262 Score = 37.2 bits (85), Expect = 3.9, Method: Composition-based stats. Identities = 34/238 (14%), Positives = 71/238 (29%), Gaps = 41/238 (17%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C +C+ N E+ + E + K I Sbjct: 35 GCKMRCQYCH--------NPDTWEM-----ETNNSKERTVEDVLKEALRYKHFWGKDGGI 81 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML--A 240 + G GE + D +L I + +G+ TL T GF R E V+L Sbjct: 82 TVSG-GEAMLQID-FITALFIEAKKLGI-----HTTLDTCGFA---YRATPEYHVILEKL 131 Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGL--SNARRITFEYVMLKGINDSPRD 298 + + + + P K + + +V++ G+ D Sbjct: 132 LDVTDLVLLDLKEIDPEQHKIVTRQSNKNILQFARYLSDRGTPVWIRHVLVPGLTDIDDH 191 Query: 299 ALNLIKILKGIPA--KINLIPFNPWPGCEY------------LCSDQKDIVTFSECIK 342 L + ++ + K ++P++ ++ + + + +K Sbjct: 192 LKRLGEFVQTLDNVDKFEVLPYHTMGEFKWRELGIPYPLAGVKPPTPERVKNAKDIMK 249 >gi|6580770|gb|AAF18276.1| pyruvate formate lyase activating enzyme [Zymomonas mobilis subsp. mobilis ZM4] Length = 270 Score = 37.2 bits (85), Expect = 4.0, Method: Composition-based stats. Identities = 35/215 (16%), Positives = 68/215 (31%), Gaps = 40/215 (18%) Query: 123 GCSLTCSFCYTGTQKLVRN---LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179 G C +C+ ++N +T E++ +V L G I G Sbjct: 56 GLRFACQYCHNPDSWFLKNGRAVTLAEMMEEVASYADFLKRAGGGITISG---------- 105 Query: 180 SNIVMMGMGEPLCNFD---NVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG 236 GEPL + + K+ + T+GF+ A Sbjct: 106 --------GEPLVQPEFTGALLKAAKYL---------GLHTAIDTAGFLGAQADDALLSN 148 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 L + ND R L+ + + L + YV++ G+ D+ Sbjct: 149 TDLVLLDIKAFNDKR---YKALTGVELQPTLAFAKRLAALKK--PVWLRYVLVPGLTDNF 203 Query: 297 RDALNLIKILKGIPA--KINLIPFNPWPGCEYLCS 329 + NL + +++++PF+ ++ S Sbjct: 204 NEIANLADFAATLGNIERVDVLPFHKMGEYKWKAS 238 >gi|312380688|gb|EFR26616.1| hypothetical protein AND_07186 [Anopheles darlingi] Length = 707 Score = 37.2 bits (85), Expect = 4.0, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 14/122 (11%) Query: 207 SMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH--AVSNDLRNILVPINRKYPL- 263 GL R+ SG V + + + I + LH V +D+R + P +YP+ Sbjct: 21 PSGLGLHPSRVVEIRSGVVRRVDKAAKSINIRKQKPLHFGEVIDDIRCSINPTTNEYPIH 80 Query: 264 -EMLIDACRHYPGLSNARRITFE---------YVMLKGIN-DSPRDALNLIKILKGIPAK 312 L + + L + RI + +++ + ++ D+ IK+L A Sbjct: 81 LAALSEDSENLSALLESHRIVIDQKFEDRTALFLLFENLSGDNYEKVFECIKLLLKHGAN 140 Query: 313 IN 314 IN Sbjct: 141 IN 142 >gi|62183018|gb|AAX73205.1| NifB [Paenibacillus massiliensis] Length = 473 Score = 37.2 bits (85), Expect = 4.0, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 72/219 (32%), Gaps = 31/219 (14%) Query: 124 CSLTCSFCYTGTQ--KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 C++ C +C R E+L L AR +G + + ++S Sbjct: 52 CNIQCHYCNRKFDCVNESRPGVVSELLTPELAARKTIG------------VAAQLMQLSV 99 Query: 182 IVMMGMGEPLCNFDNVKKSLSIASD---SMGLSFSKRRITLSTSGFVPNIARVGEEIGVM 238 + + G G+PL N ++ D + S +TL V I +G V Sbjct: 100 VGIAGPGDPLANPKATFETFRQVRDSVKDVIFCLSTNGLTLIRH--VEEIVNLG-ISHVT 156 Query: 239 LAISLHAVSNDLRN--ILVPINRKYPLEMLIDACRHYPGL------SNARRITFEYVMLK 290 + I+ R + +Y E S + V++ Sbjct: 157 ITINAVDPCIGSRIYGWVYDGGVRYEGEEGAALLIQRQLEGLSMLSSRGVLVKVNSVLIP 216 Query: 291 GINDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEYLC 328 +ND + +++KG A I N++P PG Y Sbjct: 217 DVND--AHLPEVARVVKGHGAAIHNIMPLIIAPGSRYEQ 253 >gi|312128511|ref|YP_003993385.1| Radical SAM domain-containing protein [Caldicellulosiruptor hydrothermalis 108] gi|311778530|gb|ADQ08016.1| Radical SAM domain protein [Caldicellulosiruptor hydrothermalis 108] Length = 197 Score = 37.2 bits (85), Expect = 4.0, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 55/163 (33%), Gaps = 29/163 (17%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+ +C FC +RN L + L E + +K IV Sbjct: 20 CTNSCIFC-------IRNTERG------LGSEYDLWLEKDPTAEEILAEIKDPQKYDEIV 66 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR-----VGEEIGVM 238 G GEPL D V + + + + ++T+G I + + + Sbjct: 67 FCGYGEPLIRLDVVIEVAKKLKE-----ITSVPLRVNTNGHASYIHKKNVPQLLSGLIDR 121 Query: 239 LAISLHAVSNDLRNIL-VPINRKYPLEMLIDACRHYPGLSNAR 280 ++ISL+A + + N + P + + D + S Sbjct: 122 ISISLNAPNKERYNEICRPFAK-----DIYDHVIEFIKESKKY 159 >gi|28557069|dbj|BAC57533.1| pyruvate formate-lyase activating enzyme [Clostridium limosum] Length = 194 Score = 37.2 bits (85), Expect = 4.0, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 2/53 (3%) Query: 276 LSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA--KINLIPFNPWPGCEY 326 N ++ +V++ GI DS L I++ I KI L+P++ +Y Sbjct: 109 KRNKNKVWIRHVIVPGITDSIEHIDKLATIIRTIDNVEKIELLPYHTIGTHKY 161 >gi|301062322|ref|ZP_07202985.1| radical SAM domain protein [delta proteobacterium NaphS2] gi|300443526|gb|EFK07628.1| radical SAM domain protein [delta proteobacterium NaphS2] Length = 309 Score = 37.2 bits (85), Expect = 4.1, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 66/194 (34%), Gaps = 33/194 (17%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+ C +C N T I V P + + + I Sbjct: 26 CTFDCLYCEV---GKTTNKT---ITGGVFA--------PVDDILNQLDERLSECSPDVIT 71 Query: 184 MMGMGEPLC--NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV---PNIAR--VGEEIG 236 + G GEP D + + +D+ I + T+G + ++ + +G ++ Sbjct: 72 LAGSGEPTLHSEIDRIIWGIRKRTDTD--------IVILTNGSLFWDESVRKRVLGADL- 122 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 + +L + + + L+ +++ RI E ++L GINDS Sbjct: 123 --IMPTLSSAVPRTFQTIHRHHGGLNLDRIVEGLEQ-LRREFKGRIYLEVILLAGINDSE 179 Query: 297 RDALNLIKILKGIP 310 + L +++ I Sbjct: 180 EEITRLKPLIEKIQ 193 >gi|297617252|ref|YP_003702411.1| radical SAM protein [Syntrophothermus lipocalidus DSM 12680] gi|297145089|gb|ADI01846.1| Radical SAM domain protein [Syntrophothermus lipocalidus DSM 12680] Length = 293 Score = 37.2 bits (85), Expect = 4.1, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 66/209 (31%), Gaps = 23/209 (11%) Query: 105 TVYIPEKSRGTLCVSSQVGCSL-TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPG 163 ++Y P + + VGCS C+FC K R + EEI + +A+ GD Sbjct: 7 SIYRPPSEARSYILQCTVGCSHNGCTFCGMYKDKKYRVRSLEEIKADIRMAKLYYGDLQK 66 Query: 164 CEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSF--SKRRITLST 221 +G + ++ I N+ + + + I T Sbjct: 67 VFLADGDALAMQTDELLEI---------LNY-----LYRLFPSLYHVGIYAGPQSILQKT 112 Query: 222 SGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARR 281 + + + G + +A ++ +L IN+ E +++A + Sbjct: 113 EEELQMLKQAG----LTIAYLGIETGDE--RLLKEINKGVTYEEMVEAGQKIVRSGIKLS 166 Query: 282 ITFEYVMLKGINDSPRDALNLIKILKGIP 310 T + S A +I I Sbjct: 167 ATVLLGLAGPGERSAEHAAATARICNEIN 195 >gi|73670827|ref|YP_306842.1| hypothetical protein Mbar_A3389 [Methanosarcina barkeri str. Fusaro] gi|72397989|gb|AAZ72262.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro] Length = 215 Score = 37.2 bits (85), Expect = 4.1, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 59/186 (31%), Gaps = 25/186 (13%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 CS C FC +RN V L P E++ G + K IV Sbjct: 31 CSADCVFC-------IRNFADG-----VYGYDLRLSREPTTEEVIGALEGLDLSKYREIV 78 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIA-------RVGEEIG 236 G+GEP D V R+ L T+G I + Sbjct: 79 FTGLGEPTIRLDVVLAVTRWLKSRN------IRVRLDTNGQAALINPGRDVVSELKTAGL 132 Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296 +++SL+A S + N L K ++D + + R+T + + Sbjct: 133 DSVSVSLNAESEEKYNKLCRPIHKNAYSAVLDFVKKAKKAGISTRVTVVNIPEIDLEKCR 192 Query: 297 RDALNL 302 + A L Sbjct: 193 KLAEEL 198 >gi|312134271|ref|YP_004001609.1| Radical SAM domain-containing protein [Caldicellulosiruptor owensensis OL] gi|311774322|gb|ADQ03809.1| Radical SAM domain protein [Caldicellulosiruptor owensensis OL] Length = 197 Score = 37.2 bits (85), Expect = 4.2, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 60/169 (35%), Gaps = 44/169 (26%) Query: 124 CSLTCSFCYTGTQK---------LVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 C+ +C FC ++K L ++ TAEEIL ++ Sbjct: 20 CTNSCIFCIRNSEKGLGEGYDLWLEKDPTAEEILFEI----------------------K 57 Query: 175 VGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIAR---- 230 +K IV G GEPL D V + + S + ++T+G I + Sbjct: 58 DPQKYDEIVFCGYGEPLIKLDVVIEVAKKLKE-----ISSVPLRVNTNGHASYIHKKNVP 112 Query: 231 -VGEEIGVMLAISLHAVSNDLRNIL-VPINRKY--PLEMLIDACRHYPG 275 + ++ISL+A + N + P ++ + I R Y Sbjct: 113 QLLSGFIDRISISLNAPDKEKYNEICRPFDKDIYDHVIEFIKESRKYIK 161 >gi|261211227|ref|ZP_05925516.1| lysine 2,3-aminomutase [Vibrio sp. RC341] gi|260839728|gb|EEX66339.1| lysine 2,3-aminomutase [Vibrio sp. RC341] Length = 340 Score = 37.2 bits (85), Expect = 4.2, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 71/221 (32%), Gaps = 46/221 (20%) Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153 I + K+R L V GC++ C +C+ N ++ I Q Sbjct: 92 DPLDEQNNAIPGLLHKYKNRCLLIVKG--GCAINCRYCFRRHFPYEDNKGSKAIWQQ--- 146 Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213 + + +++ ++ G G+PL + L++ Sbjct: 147 ---------------SLDYIAQNPQLNEVIFSG-GDPL------------MAKDHELAWL 178 Query: 214 KRRITLSTSGFVPNIARVGEE------IGVMLAISLHAVSNDLRNILVPINRKYPLEMLI 267 RI +P+I R+ I + L + R ++ + + Sbjct: 179 IERIAA-----IPHIKRLRIHSRLPVVIPARITEELVELFAQTRLQILLVTHINHANEIN 233 Query: 268 DACRHYPGLSNARRITF--EYVMLKGINDSPRDALNLIKIL 306 + A +T + V+LKG+ND+ + L + L Sbjct: 234 LELKQQMARLRAVNVTLLNQGVLLKGVNDTVAAQVALSETL 274 >gi|57642095|ref|YP_184573.1| hypothetical protein TK2160 [Thermococcus kodakarensis KOD1] gi|57160419|dbj|BAD86349.1| hypothetical protein, conserved, radical SAM superfamily [Thermococcus kodakarensis KOD1] Length = 443 Score = 37.2 bits (85), Expect = 4.3, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 71/191 (37%), Gaps = 31/191 (16%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C+L+C +CY +K L + L + + + N+V Sbjct: 105 CNLSCPYCYQDLRK-------------ALDSNQDLTTDSWNRIMRLINKRINILRNVNVV 151 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIG----VML 239 G GEP+ N++ +K ++ + K +++ T+G + + R E V + Sbjct: 152 FFG-GEPMLNYNTLKVAVRDLDSLKEIGI-KTSMSIITNGTLFSKQRAQELAPYISSVQI 209 Query: 240 AISLHAVSNDLRNILVPINRKYPL--EMLIDACRHYPGLSNARRITFEYVMLKGIN-DSP 296 + ++D + + + + +ID Y +RI ++ IN D+ Sbjct: 210 TLDGMKETHDKMRPYSDGSGTFDIILKNIIDNIDQY-----RKRI----ILRSNINDDNI 260 Query: 297 RDALNLIKILK 307 +L+ LK Sbjct: 261 ASVKSLLHYLK 271 >gi|219666435|ref|YP_002456870.1| glycyl-radical enzyme activating protein family [Desulfitobacterium hafniense DCB-2] gi|219536695|gb|ACL18434.1| glycyl-radical enzyme activating protein family [Desulfitobacterium hafniense DCB-2] Length = 310 Score = 37.2 bits (85), Expect = 4.3, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 13/125 (10%) Query: 188 GEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--PNIARVGEEIGVMLAISLHA 245 GEPL D V ++L A + + T+ T G+V + +V + + L + + Sbjct: 148 GEPLMQGDFVAETLKEARRR------RLKTTIETCGYVDWSTMEKVCQHL-TSLIMDIKC 200 Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305 + + + + L+ C H+P L R + G ND D + + Sbjct: 201 MDPEKHQKYTGASNELILDNFNKLCEHFPKLPKLIRTPV----VPGFNDREEDIREIAEF 256 Query: 306 LKGIP 310 +K P Sbjct: 257 VKDKP 261 >gi|85707986|ref|ZP_01039052.1| hypothetical protein NAP1_02085 [Erythrobacter sp. NAP1] gi|85689520|gb|EAQ29523.1| hypothetical protein NAP1_02085 [Erythrobacter sp. NAP1] Length = 336 Score = 37.2 bits (85), Expect = 4.3, Method: Composition-based stats. Identities = 35/199 (17%), Positives = 70/199 (35%), Gaps = 34/199 (17%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C L C++C + + E++ + + R ++ I Sbjct: 28 CDLRCTYCMPERMTFLP-----------------KREVLTLEELYDLASGFIDRGVTKIR 70 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISL 243 + G GEPL D V + +G +TL+T+ ++ + ++ L Sbjct: 71 ITG-GEPLVRRDIV-DLIRALGRKLGEGL--EELTLTTNAT-----QLADHADALVRAGL 121 Query: 244 HAVSNDL----RNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 V+ L R + + R+ L ++D ++ ++ V LKG N + Sbjct: 122 RRVNVSLDTLDRELFAKLTRRDALPRVLDGIA--AAKASGLKVKLNAVALKGAN--EEEL 177 Query: 300 LNLIKILKGIPAKINLIPF 318 +LI G ++ LI Sbjct: 178 PDLIGWAHGQGHEVTLIEV 196 >gi|319940982|ref|ZP_08015319.1| pyruvate formate-lyase 1-activating enzyme [Sutterella wadsworthensis 3_1_45B] gi|319805555|gb|EFW02350.1| pyruvate formate-lyase 1-activating enzyme [Sutterella wadsworthensis 3_1_45B] Length = 244 Score = 37.2 bits (85), Expect = 4.5, Method: Composition-based stats. Identities = 29/245 (11%), Positives = 70/245 (28%), Gaps = 51/245 (20%) Query: 123 GCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNI 182 GC + C +C+ + + K I Sbjct: 28 GCRMRCVYCHNPD---------------TWRIHAGEEKSAAEVLRMALRYRPYWGKEGGI 72 Query: 183 VMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFV--------PNIARVGEE 234 + G GEPL D + + + + G++ TL T G R+ + Sbjct: 73 TVSG-GEPLLQIDFLIELFE-LAKTEGIN-----TTLDTCGLPFTKDPAWLVKFERLMKS 125 Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIND 294 ++ + L + L I AC + + + + +V++ G D Sbjct: 126 TD-LVMLDLKHIDPPTHKRLTGWKN-----DSILACAQWLS-EHGKPMWIRHVLVPGWTD 178 Query: 295 SPRDALNLIKILKGIPA--KINLIPFNPWPGCEYLC------------SDQKDIVTFSEC 340 + L + + ++ ++P++ + ++ + + + Sbjct: 179 EDAALVKLAAFVAELRTVKRVEVLPYHTFAIPKWDRLGIPNKIRDVLPPEPERVANAKRI 238 Query: 341 IKRSG 345 + G Sbjct: 239 LHAFG 243 >gi|238927149|ref|ZP_04658909.1| radical SAM domain protein [Selenomonas flueggei ATCC 43531] gi|238884931|gb|EEQ48569.1| radical SAM domain protein [Selenomonas flueggei ATCC 43531] Length = 342 Score = 37.2 bits (85), Expect = 4.6, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 9/99 (9%) Query: 107 YIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166 IP + T+ + C+ C +C T R+ E + L R D E Sbjct: 18 IIPLAAPFTVYIEQTKYCNFKCFYCIHST----RDEADGEF--RALGHRMQHIDEGFFEK 71 Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCN---FDNVKKSLS 202 I + I IV G+GEPL N D V+ ++ Sbjct: 72 IIHDLKAFPQGGIKRIVFSGLGEPLMNPRLPDYVRMAVE 110 >gi|156936993|ref|YP_001434789.1| radical SAM domain-containing protein [Ignicoccus hospitalis KIN4/I] gi|156565977|gb|ABU81382.1| Radical SAM domain protein [Ignicoccus hospitalis KIN4/I] Length = 338 Score = 37.2 bits (85), Expect = 4.6, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 75/207 (36%), Gaps = 31/207 (14%) Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167 I ++ L V CS+ C FC ++ A+ ++ + R+ + D + + Sbjct: 25 IIDRGTNVLQVRITTVCSMCCKFCSVDAGPCSKSRWADFVVTDLEWLRAWVNDVVKFKGV 84 Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227 +++ G+G+PL NV + G++ + L T G Sbjct: 85 PVE-----------VLLDGVGDPLE-HPNVVGVVRTLKSIEGVA----SVALETHGL--- 125 Query: 228 IARVGEEIGVMLA-ISLHAVS------NDLRNILVPINRKYPLEMLIDACRHYPGLSNAR 280 ++ E++ LA L ++ ++ + + Y + + + Sbjct: 126 --KLNEDLAFSLAEAGLDRINLSIETLDEAKAKELAGRPDYDVRRVKEVIEK-VFRETQV 182 Query: 281 RITFEYVMLKGINDSPRDALNLIKILK 307 I V+L GIND D +IK +K Sbjct: 183 DIHVTPVLLPGIND--EDIKEIIKWVK 207 >gi|322419387|ref|YP_004198610.1| Radical SAM domain-containing protein [Geobacter sp. M18] gi|320125774|gb|ADW13334.1| Radical SAM domain protein [Geobacter sp. M18] Length = 285 Score = 37.2 bits (85), Expect = 4.7, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 76/232 (32%), Gaps = 32/232 (13%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C++ C +C R+ A E + +R L + E M P G I I Sbjct: 35 CNIKCGYCT------RRHDCANE-SRPGVTSRLLTPEEAIVRVREVMASPVTGPIIKVIG 87 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVMLAI 241 + G G+PL N + ++ + F +ST+G + + + L + Sbjct: 88 IAGPGDPLFN-EETFETFRLVDQE----FPDLIKCMSTNGLLLPDKMLVLADLGLHSLTV 142 Query: 242 SLHAVSNDLRNILVPINR----KYPLEMLIDACRH------YPGLSNARRITFEYVMLKG 291 +L+ + + + Y E D I V++ G Sbjct: 143 TLNTLDPKVGGKIYSHVNYKGTTYRGEEGADILVRNQLEGIRLAAELGMTIKINTVLIPG 202 Query: 292 INDSPRDALNLIKILKGIPAKI-NLIPFNPWPGCEY---LCSDQKDIVTFSE 339 +ND + + +K + A + N++P P ++ + + Sbjct: 203 VND--EQIPLISQKVKELGAFVMNIMPL--IPQADFAHVEAPSAELLDALRR 250 >gi|238918508|ref|YP_002932022.1| pyruvate formate lyase-activating enzyme [Edwardsiella ictaluri 93-146] gi|238868076|gb|ACR67787.1| pyruvate formate lyase-activating enzyme [Edwardsiella ictaluri 93-146] Length = 287 Score = 37.2 bits (85), Expect = 4.7, Method: Composition-based stats. Identities = 38/252 (15%), Positives = 76/252 (30%), Gaps = 47/252 (18%) Query: 117 CVSSQVGC----SLTCSFCYTGTQKLVRNLTAEEI---LLQVLLARSLLGDFPGCEDIEG 169 +S Q G +L+C C T Q R + + VL+ F + G Sbjct: 61 ALSLQAGKILWDALSCRQCDTCLQGCPRQANPMALSLSVDDVLMQLRRQAAFIKGITVSG 120 Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS---KRRITLSTSGFVP 226 + + +P ++L DS G S R+ G + Sbjct: 121 GEATLQLPFLLALFQAIRRDPG------LQALDCLVDSNG-ELSEPGWTRLIPWCDGVMV 173 Query: 227 NIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEY 286 ++ G+E L + L ++ + + Sbjct: 174 DLKAWGDERH---------------RWLTGRGNRRILHSILWLAQRRRLAELRLLV---- 214 Query: 287 VMLKGINDSPRDALNLIK---ILKGIPAKINLIPFNPW----PGCEYLCSDQKDIVTFSE 339 + +D L + +L +P ++N F+ P +L + + DI ++ Sbjct: 215 --IPQHSDYLAHIDALAEFILLLDDVPVRLN--AFHHHGVYGPASAWLTATKADIEQVAQ 270 Query: 340 CIKRSGYSSPIR 351 ++ G + IR Sbjct: 271 ALEARGVGAVIR 282 >gi|323141695|ref|ZP_08076573.1| six-Cys-in-45 modification radical SAM protein [Phascolarctobacterium sp. YIT 12067] gi|322413851|gb|EFY04692.1| six-Cys-in-45 modification radical SAM protein [Phascolarctobacterium sp. YIT 12067] Length = 487 Score = 37.2 bits (85), Expect = 4.8, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 47/132 (35%), Gaps = 18/132 (13%) Query: 115 TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPS 174 +LC+ C+L C +C+ T R L+ + IE + S Sbjct: 114 SLCLLVTHDCNLRCGYCFADTGSFGGC-------------RQLMSKETAEKAIEFAIEGS 160 Query: 175 VGRKISNIVMMGMGEPLCNFDNVK---KSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231 R + M G GEPL N+ V + + G + T T NI + Sbjct: 161 KKRHNLELDMFG-GEPLMNWPVVVHITEYVRRREKETGKNIKLTLTTNGTLLNDDNI-KF 218 Query: 232 GEEIGVMLAISL 243 + VML +S+ Sbjct: 219 LNDNRVMLVLSM 230 >gi|85860302|ref|YP_462504.1| metallo cofactor biosynthesis protein [Syntrophus aciditrophicus SB] gi|85723393|gb|ABC78336.1| metallo cofactor biosynthesis protein [Syntrophus aciditrophicus SB] Length = 232 Score = 37.2 bits (85), Expect = 4.8, Method: Composition-based stats. Identities = 50/229 (21%), Positives = 80/229 (34%), Gaps = 36/229 (15%) Query: 73 PEIVDEKISCDGTRKWLLR-FPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFC 131 P + ++ S +L R P+ ET+ E L ++++ CS C FC Sbjct: 14 PRVYYDQRS------FLRRSMMPDHDNNPLRRETLCYEEFGNLYLNITNR--CSARCIFC 65 Query: 132 YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPL 191 +RN + V R L P E+I + +K IV G GEP Sbjct: 66 -------IRNFSDG-----VYGYRLRLSREPSEEEILRELEHFDLKKYGEIVFTGFGEPT 113 Query: 192 CNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIA-------RVGEEIGVMLAISLH 244 C D V + G+ + L T+G + + +++SL+ Sbjct: 114 CRLDTVLRITEWL-HKRGIP-----VRLDTNGHAALMYPGRDVVAELKAAGLDAVSVSLN 167 Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGIN 293 A S + N L + L++ R R+T V GIN Sbjct: 168 AESEEKYNRLCRPAFEGSYPALLEFTRKAVMAGLRTRMTV--VEQPGIN 214 >gi|119384986|ref|YP_916042.1| molybdenum cofactor biosynthesis protein A [Paracoccus denitrificans PD1222] gi|166217887|sp|A1B4A2|MOAA_PARDP RecName: Full=Molybdenum cofactor biosynthesis protein A gi|119374753|gb|ABL70346.1| GTP cyclohydrolase subunit MoaA [Paracoccus denitrificans PD1222] Length = 344 Score = 37.2 bits (85), Expect = 4.9, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 64/187 (34%), Gaps = 37/187 (19%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C C++C + + D E+++ + VG + + Sbjct: 35 CDFRCTYCMAEHMQFLP-----------------KRDLLTLEELDRLCSAFVGLGVRKLR 77 Query: 184 MMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI---GVMLA 240 + G GEPL N+ + S +G +TL+T+G +AR E+ GV Sbjct: 78 VTG-GEPLV-RRNIMEFFRAMSRHLGAGL--DELTLTTNG--SQLARFATELADCGVRRV 131 Query: 241 ISLHAVSNDLR-NILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 ++ R + R L ++ + R+ V LKG N+ Sbjct: 132 NVSLDTLDEDRFARITRWGR---LPQVLQGIE--AAKAAGMRVKINTVALKGFNE----- 181 Query: 300 LNLIKIL 306 L +++ Sbjct: 182 DELFRLV 188 >gi|306840468|ref|ZP_07473227.1| molybdenum cofactor biosynthesis protein A [Brucella sp. BO2] gi|306289483|gb|EFM60701.1| molybdenum cofactor biosynthesis protein A [Brucella sp. BO2] Length = 314 Score = 37.2 bits (85), Expect = 5.0, Method: Composition-based stats. Identities = 39/212 (18%), Positives = 72/212 (33%), Gaps = 33/212 (15%) Query: 124 CSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183 C C++C + D E+++ + + + + + Sbjct: 5 CDFRCTYCMAEHMTFLP-----------------KKDLLTLEELDRLCSVFIEKGVRKLR 47 Query: 184 MMGMGEPLC--NFDNVKKSLSIASDSMGLSFSKRRITLSTSG--FVPNIARVGEEIGVML 239 + G GEPL N ++ +LS S L +TL+T+G + + + Sbjct: 48 LTG-GEPLVRKNIMHLIGNLSRHLKSGAL----DELTLTTNGSQLARFAGELADCGVRRI 102 Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299 +SL ++ + + + IDA R + V LK ND+ Sbjct: 103 NVSLDTLNPEKFRTITRWGDLSRVLEGIDAAR-----KAGIHVKINAVALKDFNDAE--I 155 Query: 300 LNLIKILKGIPAKINLIPFNPWPGCEYLCSDQ 331 LI+ G + LI P E+ +DQ Sbjct: 156 PELIRWAHGRGMDVTLIETMPMGEIEFDRTDQ 187 >gi|126465145|ref|YP_001040254.1| radical SAM domain-containing protein [Staphylothermus marinus F1] gi|126013968|gb|ABN69346.1| Radical SAM domain protein [Staphylothermus marinus F1] Length = 259 Score = 37.2 bits (85), Expect = 5.1, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 51/162 (31%), Gaps = 39/162 (24%) Query: 122 VGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181 VGC+L C FC++ N G F + + + ++ Sbjct: 47 VGCNLRCKFCWSWRYSFYTN----------------KGFFQTPQQVYEKLTRIAEKRKYK 90 Query: 182 IVMMGMGEPLCNFDNVKKSLSIA--------SDSMGLSFSKRRITLSTSGFVPNIARVGE 233 + + GEP +V + L + ++ GL R + Sbjct: 91 YIRLSGGEPTITMKHVIQLLELLDQTKFVFILETNGLLIGYHR---------KYAEELAT 141 Query: 234 EIGVMLAISLHAVSNDLRNILVPINRKY------PLEMLIDA 269 + + +S + + L ++KY LE LIDA Sbjct: 142 YRKIAVRVSFKGTTPEEFEQLTGADKKYYGYQFKALENLIDA 183 >gi|310826493|ref|YP_003958850.1| hypothetical protein ELI_0875 [Eubacterium limosum KIST612] gi|308738227|gb|ADO35887.1| hypothetical protein ELI_0875 [Eubacterium limosum KIST612] Length = 205 Score = 37.2 bits (85), Expect = 5.1, Method: Composition-based stats. Identities = 37/204 (18%), Positives = 73/204 (35%), Gaps = 22/204 (10%) Query: 110 EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG 169 K + L V++ C+ C FC+ + R A + ++ L R P E+I Sbjct: 12 YKDKKALYVNATNRCNNRCVFCH----RFNREEAASRM-DELWLERE-----PSVEEILS 61 Query: 170 MVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIA 229 + K +V G GEP C ++ + G++ + L+T+G + Sbjct: 62 DIRARDMAKYDEVVFCGYGEPTCRLKDILAIARVLKREYGVA-----VRLNTNGLAGTLY 116 Query: 230 ------RVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRIT 283 + + V +++SL+A + N L + E ++ + + Sbjct: 117 GEDVTPWFADLVDV-VSVSLNAPDAEEYNALCRPQAEDAFEYMLRFAENAARFAKVYMTI 175 Query: 284 FEYVMLKGINDSPRDALNLIKILK 307 + + +G R A LK Sbjct: 176 IDTMSEEGQAACRRIAEECGAALK 199 >gi|224371768|ref|YP_002605932.1| SucD4 [Desulfobacterium autotrophicum HRM2] gi|223694485|gb|ACN17768.1| SucD4 [Desulfobacterium autotrophicum HRM2] Length = 256 Score = 37.2 bits (85), Expect = 5.1, Method: Composition-based stats. Identities = 10/73 (13%), Positives = 29/73 (39%), Gaps = 1/73 (1%) Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRD 298 ++ + + + + ++++D + + +T E +++KG+ND D Sbjct: 130 VSFKIDTLDEKTWRKINRPHNIIKFDVMLDGICSFAKKFTGQIVT-ETMLIKGLNDDMID 188 Query: 299 ALNLIKILKGIPA 311 ++GI Sbjct: 189 IEKTADFIRGINC 201 >gi|167042255|gb|ABZ06986.1| putative Radical SAM superfamily protein [uncultured marine crenarchaeote HF4000_ANIW93J19] Length = 343 Score = 36.8 bits (84), Expect = 5.2, Method: Composition-based stats. Identities = 35/208 (16%), Positives = 67/208 (32%), Gaps = 10/208 (4%) Query: 108 IPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDI 167 + G C + V C F T K EEI+ ++ R L + Sbjct: 72 MEFSPAGMYCENRCVYCWRPMEFYETMEMKPENVAEPEEIMTNLMAERRKLIMGHYGDPN 131 Query: 168 EGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN 227 + S+ + GEP + + + + + I L T+G P+ Sbjct: 132 QDKKKLDESLLPSHYAISLSGEPTM-YPKLPALIKYLKSFE----ATKSIFLVTNGQEPD 186 Query: 228 -IARVGEE--IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF 284 I ++G+E + L +S +A + + E + L R Sbjct: 187 MIQKLGDENALPTQLYLSTNAADYESFLKINRPRYDDSWERWNKTLKMLSTLDT--RTVL 244 Query: 285 EYVMLKGINDSPRDALNLIKILKGIPAK 312 +++G ND+ + +L+ A Sbjct: 245 RLTLIRGYNDNEKMIPAFASLLRQSNAH 272 >gi|213618828|ref|ZP_03372654.1| hypothetical protein SentesTyp_21135 [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 35 Score = 36.8 bits (84), Expect = 5.2, Method: Composition-based stats. Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%) Query: 357 DILAACGQLKSLS-KRIPKVPRQEMQ 381 DI AACGQL R + R+ MQ Sbjct: 1 DIDAACGQLAGDVIDRTKRTLRKRMQ 26 >gi|168183531|ref|ZP_02618195.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum Bf] gi|237796670|ref|YP_002864222.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum Ba4 str. 657] gi|182673365|gb|EDT85326.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum Bf] gi|229263272|gb|ACQ54305.1| pyruvate formate-lyase activating enzyme [Clostridium botulinum Ba4 str. 657] Length = 232 Score = 36.8 bits (84), Expect = 5.2, Method: Composition-based stats. Identities = 36/242 (14%), Positives = 78/242 (32%), Gaps = 49/242 (20%) Query: 97 IGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARS 156 +G IET+ + + + V Q GC L C +C+ + Sbjct: 1 MGKIHSIETMGLVDGPGIRVVVFFQ-GCQLRCVYCHNPD---------------TWDFNA 44 Query: 157 LLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKS---