RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781120|ref|YP_003065533.1| radical SAM protein
[Candidatus Liberibacter asiaticus str. psy62]
(384 letters)
>gnl|CDD|183031 PRK11194, PRK11194, ribosomal RNA large subunit methyltransferase
N; Provisional.
Length = 372
Score = 351 bits (902), Expect = 2e-97
Identities = 160/363 (44%), Positives = 214/363 (58%), Gaps = 22/363 (6%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
KK +L+ + R+++ E ++G R Q+ KWIY G DF M++I++ +R L
Sbjct: 4 KKINLLDLNRQQMREFFAELG----EKPFRADQVMKWIYHYGCDDFDEMTNINKVLREKL 59
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I PE+ +E+ S DGT KW + G +ETVYIPE R TLCVSSQVGC
Sbjct: 60 KEVAEIRAPEVAEEQRSSDGTIKWAIAV------GDQRVETVYIPEDDRATLCVSSQVGC 113
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+L C FC T Q RNL EI+ QV A ++G + G R I+N+VM
Sbjct: 114 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAA----KVTGQ------RPITNVVM 163
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLH 244
MGMGEPL N +NV ++ I D G SKRR+TLSTSG VP + ++G+ I V LAISLH
Sbjct: 164 MGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLH 223
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNAR--RITFEYVMLKGINDSPRDALNL 302
A +++LR+ +VPIN+KY +E + A R Y SNA R+T EYVML +ND A L
Sbjct: 224 APNDELRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTVEYVMLDHVNDGTEHAHQL 283
Query: 303 IKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAAC 362
++LK P KINLIP+NP+PG Y S I FS+ + G++ +R RG DI AAC
Sbjct: 284 AELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAAC 343
Query: 363 GQL 365
GQL
Sbjct: 344 GQL 346
>gnl|CDD|161680 TIGR00048, TIGR00048, radical SAM enzyme, Cfr family. A
Staphylococcus sciuri plasmid-borne member of this
family, Cfr, has been identified as essential to
transferrable resistance to chloramphenicol and
florfenicol by an unknown mechanism. A 14-15 residue
cluster with four perfectly conserved Cys residues
suggests this protein may be an enzyme with an
iron-sulfur cluster. The Cys cluster is part of the
radical SAM domain, suggested to provide a general
mechanism by which the Fe-S center cleaves
S-adenosylmethionine to initiate radical-based
catalysis. Members of this family lack apparent
transmembrane domains.
Length = 355
Score = 349 bits (897), Expect = 7e-97
Identities = 160/374 (42%), Positives = 223/374 (59%), Gaps = 27/374 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K SL + +EL + L +G R QI+KW+Y +G F M+++S+++R LN
Sbjct: 6 KPSLYDLTLQELRQWLKDLGEKP----FRAKQIYKWLYHKGKDSFDDMTNLSKDLREKLN 61
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ F I PEI E+ S DGT K+L + +G IETV IPEK R T+CVSSQVGC+
Sbjct: 62 RVFEIRTPEIAHEQRSVDGTIKYLFK-----LGDGQTIETVLIPEKDRATVCVSSQVGCA 116
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
L C+FC T RNL A EI+ QVL + + + G ++SN+V M
Sbjct: 117 LGCTFCATAKGGFNRNLEASEIIGQVLRVQKINNET--------------GERVSNVVFM 162
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
GMGEPL N + V K++ I +D GL SKRRIT+STSG VP I + ++ + V LAISLH
Sbjct: 163 GMGEPLLNLNEVVKAMEIMNDDFGLGISKRRITISTSGVVPKIDILADKMLQVALAISLH 222
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +++LR+ L+PIN+KY +E L+ A R Y + RR+TFEYV+L G+ND A L +
Sbjct: 223 APNDELRSSLMPINKKYNIETLLAAVRRYLNKTG-RRVTFEYVLLDGVNDQVEHAEELAE 281
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKG K+NLIP+NP+P +Y + I F++ + G++ IR RG DI AACGQ
Sbjct: 282 LLKGTKCKVNLIPWNPFPEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGDDIDAACGQ 341
Query: 365 L--KSLSKRIPKVP 376
L K + R + P
Sbjct: 342 LRAKDVIDRTKRTP 355
>gnl|CDD|172938 PRK14463, PRK14463, ribosomal RNA large subunit methyltransferase
N; Provisional.
Length = 349
Score = 335 bits (860), Expect = 2e-92
Identities = 152/354 (42%), Positives = 216/354 (61%), Gaps = 33/354 (9%)
Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQ--HFSIIY 72
+ELE L G R R QI+KW+Y R R F M+++S+++R L + S +
Sbjct: 13 QELEAFLAGQG----KERFRAKQIFKWLYQRDARSFAEMTNLSKDLRAELEETARISNLE 68
Query: 73 PEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCY 132
PE V+ +S DGTRK+L R +E+V IP++ R TLC+SSQVGC++ C+FC
Sbjct: 69 PEAVE--VSRDGTRKYLFRLEDGN-----AVESVLIPDEDRNTLCISSQVGCAMGCAFCL 121
Query: 133 TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLC 192
TGT +L RNLT EI+ QV + D P + NIV MGMGEPL
Sbjct: 122 TGTFRLTRNLTTAEIVNQVCAVKR---DVP----------------VRNIVFMGMGEPLA 162
Query: 193 NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRN 252
N DNV +L I +D GL FS R++T+STSG VP + +G E+ V LA+SL+A ++++R+
Sbjct: 163 NLDNVIPALQILTDPDGLQFSTRKVTVSTSGLVPEMEELGREVTVNLAVSLNATTDEVRD 222
Query: 253 ILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAK 312
++P+NR+YPL L+ AC+ +P L R+IT EYVM++G+NDS DA L+++L IP+K
Sbjct: 223 RIMPVNRRYPLAELLAACKAFP-LPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPSK 281
Query: 313 INLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLK 366
+NLIPFN GC++ Q+ I F + + + R+ RG DI AACGQLK
Sbjct: 282 VNLIPFNEHEGCDFRSPTQEAIDRFHKYLLDKHVTVITRSSRGSDISAACGQLK 335
>gnl|CDD|172935 PRK14460, PRK14460, ribosomal RNA large subunit methyltransferase
N; Provisional.
Length = 354
Score = 317 bits (814), Expect = 3e-87
Identities = 145/354 (40%), Positives = 205/354 (57%), Gaps = 21/354 (5%)
Query: 15 EELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPE 74
ELE + R R QIW+W++ +G RDF M+++S+ +R L + I +PE
Sbjct: 10 PELEAFITA---ELGEPRFRARQIWQWLWQKGARDFDSMTNVSKALRARLAEKAVINWPE 66
Query: 75 IVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKS-RGTLCVSSQVGCSLTCSFCYT 133
+ + S DGT K+LLR G + +ETV IP KS R T C+S QVGC++ C+FC T
Sbjct: 67 VETVQTSSDGTVKFLLRLA----DGAL-VETVLIPSKSRRYTQCLSCQVGCAMGCTFCST 121
Query: 134 GTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCN 193
GT RN+T EIL QVL+AR LGD G + + N+V MGMGEPL N
Sbjct: 122 GTMGFERNMTMGEILGQVLVAREHLGD-NGPDH----------PILRNLVFMGMGEPLLN 170
Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNI 253
D V +SL ++ GL+FS RRIT+ST G + +GE LA+SLHA + +LR
Sbjct: 171 LDEVMRSLRTLNNEKGLNFSPRRITVSTCGIEKGLRELGESGLAFLAVSLHAPNQELRER 230
Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313
++P ++PL+ LI A + YP L R+TFEY++L G+NDS A L+++L K+
Sbjct: 231 IMPKAARWPLDDLIAALKSYP-LKTRERVTFEYLLLGGVNDSLEHARELVRLLSRTKCKL 289
Query: 314 NLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQLKS 367
NLI +NP G Y ++ I+ F + + G ++ IR +G DI AACGQLK+
Sbjct: 290 NLIVYNPAEGLPYSAPTEERILAFEKYLWSKGITAIIRKSKGQDIKAACGQLKA 343
>gnl|CDD|184686 PRK14454, PRK14454, ribosomal RNA large subunit methyltransferase
N; Provisional.
Length = 342
Score = 310 bits (797), Expect = 3e-85
Identities = 146/363 (40%), Positives = 216/363 (59%), Gaps = 29/363 (7%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
++++ EEL+E + + G + R QI+ WIY +G+ DF M++I + +R L
Sbjct: 1 MKNILDFTLEELKEWMKENG----EKKFRAKQIFDWIYKKGVTDFDEMTNIPKNLREKLK 56
Query: 66 QHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
++F I P+IV + +S DGT K+L I IE+V + K ++CVS+QVGC
Sbjct: 57 ENFYIGIPKIVKKLVSKIDGTVKFLFELEDGNI-----IESVVMKYKHGNSICVSTQVGC 111
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C FC + +VRNLTA E+L Q+L A++ +G+ +ISNIV+
Sbjct: 112 RMGCKFCASTIGGMVRNLTAGEMLDQILAAQNDIGE-----------------RISNIVL 154
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
MG GEPL N++NV K L I + GL+ +R ITLST G VP I + +E + + LAISL
Sbjct: 155 MGSGEPLDNYENVMKFLKIVNSPYGLNIGQRHITLSTCGIVPKIYELADENLQITLAISL 214
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +++LR ++PI KY +E LI+AC++Y +N RRITFEY ++KG+NDS DA L
Sbjct: 215 HAPNDELRKKMMPIANKYSIEELIEACKYYINKTN-RRITFEYALVKGVNDSKEDAKELG 273
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
K+LKG+ +NLIP N + S ++ I F +K++G + IR G DI AACG
Sbjct: 274 KLLKGMLCHVNLIPVNEVKENGFKKSSKEKIKKFKNILKKNGIETTIRREMGSDINAACG 333
Query: 364 QLK 366
QL+
Sbjct: 334 QLR 336
>gnl|CDD|184690 PRK14462, PRK14462, ribosomal RNA large subunit methyltransferase
N; Provisional.
Length = 356
Score = 305 bits (784), Expect = 9e-84
Identities = 142/376 (37%), Positives = 212/376 (56%), Gaps = 42/376 (11%)
Query: 5 KKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLL 64
K+++ EEL E L R QI++W+Y + F M ++ +++R L
Sbjct: 1 MKKNIYDFTLEELSELL--------KPSFRAKQIYQWLYAKYATSFDDMKNLPKDLREYL 52
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEK------------- 111
Q F++ +IV + S DG++K+L + + +E V + K
Sbjct: 53 AQEFTLDPLKIVKVEQSKDGSKKYLFK-----LRDGHTVEAVLLKMKDEKIDEEGKILEH 107
Query: 112 SRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMV 171
++ T+CVSSQVGC + C+FC T VRNL+A EI+ Q+L + + P E V
Sbjct: 108 AKYTVCVSSQVGCKVGCAFCLTAKGGFVRNLSAGEIVGQILWIKKD-NNIP----YEKRV 162
Query: 172 IPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARV 231
NIV MGMGEPL N DNV K++ I S++ GL+ S RR T+STSG I ++
Sbjct: 163 ---------NIVYMGMGEPLDNLDNVSKAIKIFSENDGLAISPRRQTISTSGLASKIKKL 213
Query: 232 GEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLK 290
GE +GV LAISLHAV ++LR+ L+PIN+ Y +E +IDA R +P + +R+ FEY+++K
Sbjct: 214 GEMNLGVQLAISLHAVDDELRSELMPINKAYNIESIIDAVRKFP-IDQRKRVMFEYLVIK 272
Query: 291 GINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPI 350
+ND + A L+K+L GI AK+NLI FNP G ++ +D++ F + + G I
Sbjct: 273 DVNDDLKSAKKLVKLLNGIKAKVNLILFNPHEGSKFERPSLEDMIKFQDYLNSKGLLCTI 332
Query: 351 RTPRGLDILAACGQLK 366
R +GLDI AACGQL+
Sbjct: 333 RESKGLDISAACGQLR 348
>gnl|CDD|184693 PRK14467, PRK14467, ribosomal RNA large subunit methyltransferase
N; Provisional.
Length = 348
Score = 291 bits (747), Expect = 2e-79
Identities = 142/367 (38%), Positives = 211/367 (57%), Gaps = 32/367 (8%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
E++ EELEE ++++G + R QI KW+Y + + DF M+D+S+E R LL
Sbjct: 1 MENIKNYNLEELEEFVVELGWE----KYRAKQIAKWVYKKKVTDFDEMTDLSKEDRQLLK 56
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
++F E++D ++ D + K+L + IETV I E+ TLCVSSQVGC+
Sbjct: 57 ENFEFHTLELLD-RVEADDSVKYLFKTKDGHT-----IETVLIKERDHLTLCVSSQVGCA 110
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC T L+RNL EI+ Q + + LG+ +I N+V M
Sbjct: 111 VGCKFCATAKDGLIRNLRTAEIIDQYIQVQKFLGE----------------NRIRNVVFM 154
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEI---GVMLAIS 242
GMGEPL N++NV+K++ I + GL SKRRIT+STSG + I R+ E+ V LA+S
Sbjct: 155 GMGEPLANYENVRKAVQIMTSPWGLDLSKRRITISTSGIIHQIKRMAEDPVMPEVNLAVS 214
Query: 243 LHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNL 302
L+A S LR ++PI++ LE L++ + YP L RRI EYV++KG+NDSP DAL L
Sbjct: 215 LNASSQKLRERIMPISKTNTLEELMEVLKQYP-LPPGRRIMLEYVLIKGVNDSPEDALRL 273
Query: 303 IKILKGIPA--KINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
+++ K+NLIPFNP P Y + + + F + + +G S+ +R +G+DI
Sbjct: 274 AQLIGKNKKKFKVNLIPFNPDPELPYERPELERVYKFQKILWDNGISTFVRWSKGVDIFG 333
Query: 361 ACGQLKS 367
ACGQL+
Sbjct: 334 ACGQLRK 340
>gnl|CDD|184687 PRK14455, PRK14455, ribosomal RNA large subunit methyltransferase
N; Provisional.
Length = 356
Score = 291 bits (746), Expect = 3e-79
Identities = 140/363 (38%), Positives = 217/363 (59%), Gaps = 25/363 (6%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K S+ + +EL+E L++ G + R +QIW W+Y + ++ F+ M+++S+++R LN
Sbjct: 10 KPSIYSLTLDELQEWLVEQG----EKKFRATQIWDWLYRKRVQSFEEMTNLSKDLREKLN 65
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+F + + ++ S DGT K+L P IETV + + ++CV++QVGC
Sbjct: 66 DNFVVTTLKTRVKQESKDGTIKFLFELP-----DGYLIETVLMRHEYGNSVCVTTQVGCR 120
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C+FC + L R+L A EI+ QV+L + L + ++S+IV+M
Sbjct: 121 IGCTFCASTLGGLKRDLEAGEIVAQVMLVQKYLDE--------------TEERVSHIVVM 166
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLH 244
G+GEP N+DNV L I +D GL+ R IT+STSG P I +E + + LAISLH
Sbjct: 167 GIGEPFDNYDNVMDFLRIINDDKGLAIGARHITVSTSGIAPKIYDFADEGLQINLAISLH 226
Query: 245 AVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIK 304
A +N+LR+ L+PINR YPLE L++A +Y +N RR+TFEY++L G+ND A L
Sbjct: 227 APNNELRSSLMPINRAYPLEKLMEAIEYYIEKTN-RRVTFEYILLGGVNDQVEHAEELAD 285
Query: 305 ILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQ 364
+LKGI +NLIP NP P +Y+ + ++DI F + +K++G + IR G DI AACGQ
Sbjct: 286 LLKGIKCHVNLIPVNPVPERDYVRTPKEDIFAFEDTLKKNGVNCTIRREHGTDIDAACGQ 345
Query: 365 LKS 367
L++
Sbjct: 346 LRA 348
>gnl|CDD|172944 PRK14469, PRK14469, ribosomal RNA large subunit methyltransferase
N; Provisional.
Length = 343
Score = 283 bits (726), Expect = 5e-77
Identities = 135/363 (37%), Positives = 208/363 (57%), Gaps = 30/363 (8%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
++++ + EEL + ++G+ + R QI WIY + + +F M+++S++ R LL+
Sbjct: 1 MKNILDLSYEELVSEITELGLE----KYRADQILDWIYKKKVFNFDEMTNLSKDHRALLS 56
Query: 66 QHFSIIYPEIVDEKIS-CDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+HFSI +P+++D+++S DGT K+L IE+V + R T C+S+QVGC
Sbjct: 57 EHFSIPFPKLLDKQVSKIDGTTKFLWELEDGNT-----IESVMLFHPDRITACISTQVGC 111
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C FC TG VRNLT EI+ Q+L E E K+ N+V
Sbjct: 112 PVKCIFCATGQSGFVRNLTTGEIVSQIL----------AMEKEEKK-------KVGNVVY 154
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISL 243
MGMGEPL N++NV KS+ I + + RRIT+ST G I ++ EE + V LA+SL
Sbjct: 155 MGMGEPLLNYENVIKSIKILNHKKMKNIGIRRITISTVGIPEKIIQLAEEGLDVKLALSL 214
Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
HA +N R+ +VP+N+KY +E +I+A + Y + R+T EY+++KG ND DA L
Sbjct: 215 HAPTNFKRDQIVPLNKKYSIEEIINAVKIYQKKTG-NRVTIEYILIKGFNDEIEDAKKLA 273
Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACG 363
++LKG+ +NLIP NP S ++ I F E + ++G + IR +G DI AACG
Sbjct: 274 ELLKGLKVFVNLIPVNPTVPGLEKPSRER-IERFKEILLKNGIEAEIRREKGSDIEAACG 332
Query: 364 QLK 366
QL+
Sbjct: 333 QLR 335
>gnl|CDD|184692 PRK14466, PRK14466, ribosomal RNA large subunit methyltransferase
N; Provisional.
Length = 345
Score = 272 bits (696), Expect = 1e-73
Identities = 138/367 (37%), Positives = 197/367 (53%), Gaps = 30/367 (8%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
K L+GM EEL+ ++G+P QI W+Y + + M++IS R L
Sbjct: 4 KYPLLGMTLEELQSVAKRLGMP----AFAAKQIASWLYDKKVTSIDEMTNISLAHREKLA 59
Query: 66 QHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCS 125
+ + I VDE+ S DGT K+L +E+VYIPE+ R TLCVSSQVGC
Sbjct: 60 EEYEIGAYAPVDEQRSVDGTIKYLFPVGEGHF-----VESVYIPEEDRATLCVSSQVGCK 114
Query: 126 LTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMM 185
+ C FC TG Q NLTA +IL Q+ +P K++N+V M
Sbjct: 115 MNCLFCMTGKQGFTGNLTAAQILNQI------------------YSLPE-RDKLTNLVFM 155
Query: 186 GMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHA 245
GMGEPL N D V K+L I + G +S +RIT+ST G + R EE LAISLH+
Sbjct: 156 GMGEPLDNLDEVLKALEILTAPYGYGWSPKRITVSTVGLKKGLKRFLEESECHLAISLHS 215
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ R L+P + + ++ +ID ++Y S RR++FEY++ KG+NDS + A L+K+
Sbjct: 216 PFPEQRRELMPAEKAFSIKEIIDLLKNY-DFSKQRRVSFEYIVFKGLNDSLKHAKELVKL 274
Query: 306 LKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
L+GI ++NLI F+ PG + SD + F + + G + IR RG DI AACG L
Sbjct: 275 LRGIDCRVNLIRFHAIPGVDLEGSDMARMEAFRDYLTSHGVFTTIRASRGEDIFAACGML 334
Query: 366 KSLSKRI 372
S +K+
Sbjct: 335 -STAKQE 340
>gnl|CDD|184694 PRK14468, PRK14468, ribosomal RNA large subunit methyltransferase
N; Provisional.
Length = 343
Score = 261 bits (668), Expect = 2e-70
Identities = 129/333 (38%), Positives = 186/333 (55%), Gaps = 21/333 (6%)
Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFP 93
R +Q+ +W+Y +G R F M+++ + +R L + + + V+ S DG+ K+L
Sbjct: 18 RRAQLAEWLYAQGARTFDAMTNLPKALRAELAREYRLSPFREVETFRSQDGSVKYLFTLL 77
Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLL 153
+ E VY+P R T+CVS+ VGC C+FC TG RNLTA EIL QVL
Sbjct: 78 -----DGKQTEAVYMPYLDRKTICVSTMVGCPAGCAFCATGAMGFGRNLTAAEILDQVLA 132
Query: 154 ARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFS 213
G P R+I N+V+MGMGEPL N++NV K+ I L+ S
Sbjct: 133 VAGHEGISP--------------REIRNVVLMGMGEPLLNYENVLKAARIMLHPQALAMS 178
Query: 214 KRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRH 272
RR+TLST G I R+ EE +GV LA+SLHA + R ++P +Y + ++ A RH
Sbjct: 179 PRRVTLSTVGIPKGIRRLAEEDLGVRLALSLHAPDEETRQRIIPTAHRYSIAEIMAAVRH 238
Query: 273 YPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQK 332
Y ++ RR+T EY MLKG+ND A L +L+G+ + +NLIPFNPW G + S +
Sbjct: 239 YQAVT-GRRVTLEYTMLKGVNDHLWQAELLADLLRGLVSHVNLIPFNPWEGSPFQSSPRA 297
Query: 333 DIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
I+ F++ ++R G +R RG D+ AACGQL
Sbjct: 298 QILAFADVLERRGVPVSVRWSRGRDVGAACGQL 330
>gnl|CDD|184688 PRK14457, PRK14457, ribosomal RNA large subunit methyltransferase
N; Provisional.
Length = 345
Score = 258 bits (661), Expect = 2e-69
Identities = 138/375 (36%), Positives = 203/375 (54%), Gaps = 39/375 (10%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRH-LL 64
+ L+G ELE+ + G P R Q+ W+Y +G+R +S + + R L
Sbjct: 1 MKPLLGRSLAELEDWAVAQGQPA----FRGRQLHDWLYNKGVRSLDEISVLPKAWRESLK 56
Query: 65 NQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+ I IV+ ++ DGT K LL I IETV IP + R T+CVSSQVGC
Sbjct: 57 DDGVPIGRLTIVERSVAPDGTLKLLLSTEDGEI-----IETVGIPTEKRLTVCVSSQVGC 111
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVM 184
+ C FC TG L R+L A EI+ QVL + ED++ R++S++V
Sbjct: 112 PMACDFCATGKGGLKRSLKAHEIVDQVLTVQ---------EDMQ--------RRVSHVVF 154
Query: 185 MGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPN-IARVGE-------EIG 236
MGMGEPL N D V ++ + +G+ +RRIT+ST G VP I ++ E +
Sbjct: 155 MGMGEPLLNIDEVLAAIRCLNQDLGIG--QRRITVSTVG-VPKTIPQLAELAFQRLGRLQ 211
Query: 237 VMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSP 296
LA+SLHA + LR L+P + YP+E L++ CRHY ++ RR++FEY++L G+ND P
Sbjct: 212 FTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAIT-GRRVSFEYILLGGVNDLP 270
Query: 297 RDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
A L +L+G + +NLIP+NP E+ K I F +++ G + +R RGL
Sbjct: 271 EHAEELANLLRGFQSHVNLIPYNPIDEVEFQRPSPKRIQAFQRVLEQRGVAVSVRASRGL 330
Query: 357 DILAACGQLKSLSKR 371
D AACGQL+ ++R
Sbjct: 331 DANAACGQLRRNARR 345
>gnl|CDD|172936 PRK14461, PRK14461, ribosomal RNA large subunit methyltransferase
N; Provisional.
Length = 371
Score = 241 bits (617), Expect = 2e-64
Identities = 133/358 (37%), Positives = 193/358 (53%), Gaps = 21/358 (5%)
Query: 16 ELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHFSIIYPEI 75
EL E L G P R Q+++ +YV M+D+ +R L + +
Sbjct: 17 ELTELLTAWGQPA----FRARQLYRHLYVNLADSVLAMTDLPLALRERLTAELPLSTLRL 72
Query: 76 VDEKISCDG-TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTG 134
+I +G TRK L R P G V +ETV + R T+CVS+Q GC + C FC TG
Sbjct: 73 EQVQIGDNGLTRKALFRLP----DGAV-VETVLMIYPDRATVCVSTQAGCGMGCVFCATG 127
Query: 135 TQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNF 194
T L+RNL++ EI+ QV+ A L G + P VGR ++N+V MGMGEP N+
Sbjct: 128 TLGLLRNLSSGEIVAQVIWASRELRAM-GAAISKRHAGP-VGR-VTNLVFMGMGEPFANY 184
Query: 195 DNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE-IGVMLAISLHAVSNDLRNI 253
D +++ D G + R +T+ST G V I R+ E + + LAISLHA + LR+
Sbjct: 185 DRWWQAVERLHDPQGFNLGARSMTVSTVGLVKGIRRLANERLPINLAISLHAPDDALRSE 244
Query: 254 LVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKG----- 308
L+P+NR+YP+ L+ A R Y RR++FEYV+L+G ND P A L ++L+G
Sbjct: 245 LMPVNRRYPIADLMAATRDYIA-KTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPG 303
Query: 309 -IPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
+ +NLIP+NP PG S+++ + TF + G +R RG++I AACGQL
Sbjct: 304 PLLVHVNLIPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGVEIAAACGQL 361
>gnl|CDD|184689 PRK14459, PRK14459, ribosomal RNA large subunit methyltransferase
N; Provisional.
Length = 373
Score = 234 bits (598), Expect = 4e-62
Identities = 128/369 (34%), Positives = 189/369 (51%), Gaps = 36/369 (9%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
L + E EA+ ++G+P R Q+ + + R D M+D+ R L +
Sbjct: 24 LADLTPAERREAVAELGLP----AFRAKQLARHYFGRLTADPAQMTDLPAAAREELAEAL 79
Query: 69 SIIYPEIVDE--KISCDG--TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSSQVGC 124
+P ++ + D TRK L R G + +E+V + R TLC+SSQ GC
Sbjct: 80 ---FPTLLTPVRTLEADDGTTRKTLWRL----HDGTL-VESVLMRYPDRATLCISSQAGC 131
Query: 125 SLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLL--GDFPGCEDIEGMVIPSVGRKISNI 182
+ C FC TG L RNL+ EI+ QV A L G+ PG GR +SN+
Sbjct: 132 GMACPFCATGQGGLTRNLSTAEIVEQVRAAARALRDGEVPG----------GPGR-LSNV 180
Query: 183 VMMGMGEPLCNFDNVKKSLS--IASDSMGLSFSKRRITLSTSGFVPNIARV-GEEIGVML 239
V MGMGEPL N+ V ++ A GL S R +T+ST G VP I ++ E + V L
Sbjct: 181 VFMGMGEPLANYKRVVAAVRRITAPAPEGLGISARNVTVSTVGLVPAIRKLADEGLPVTL 240
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDA 299
A+SLHA ++LR+ LVP+N ++ ++ ++DA R+Y + RR++ EY +++ IND P A
Sbjct: 241 AVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADAT-GRRVSIEYALIRDINDQPWRA 299
Query: 300 LNLIKILK---GIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGL 356
L K L G +NLIP NP PG ++ S + F ++ +G +R RG
Sbjct: 300 DLLGKKLHGRGGGWVHVNLIPLNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQ 359
Query: 357 DILAACGQL 365
+I ACGQL
Sbjct: 360 EIDGACGQL 368
>gnl|CDD|172932 PRK14456, PRK14456, ribosomal RNA large subunit methyltransferase
N; Provisional.
Length = 368
Score = 220 bits (561), Expect = 6e-58
Identities = 128/370 (34%), Positives = 188/370 (50%), Gaps = 34/370 (9%)
Query: 6 KESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLN 65
+++ + R+EL E L ++G P R +Q+ +W++ F+ M+ +S+ +R L
Sbjct: 17 LQNIRNLRRQELTELLARLGEPA----WRAAQLHQWLFSHRALSFEEMTTLSKPLRRKLA 72
Query: 66 QHFSIIYPEIVDEKISCDG-----TRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
+ F+I P + +G T K L++ P +ETV IP R T C+SS
Sbjct: 73 ESFAIQPPVTEKHDETMEGSPAGPTEKLLIKLP-----DGELVETVLIPGPERMTACISS 127
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Q GC+L CSFC TG RNLTA EI QV +L + + R I+
Sbjct: 128 QAGCALRCSFCATGQMGFRRNLTAGEITGQVFALSDMLAE------------RNRERGIT 175
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASD-SMGLSFSKRRITLSTSGFVPNIARVGEE-IGVM 238
NIV MGMGEPL N DNV +++ S S S+R+IT+ST G P I R+ +
Sbjct: 176 NIVFMGMGEPLLNTDNVFEAVLTLSTRKYRFSISQRKITISTVGITPEIDRLATSGLKTK 235
Query: 239 LAISLHAVSNDLRNILVPI-NRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPR 297
LA+SLH+ + R L+P R YPL+ L +A Y + +T Y++L+GINDSP
Sbjct: 236 LAVSLHSADQEKRERLMPQAARDYPLDELREALIGYASKT-GEPVTLVYMLLEGINDSPE 294
Query: 298 DALNLIKILKGIPAKINLIPFNPWPGCEY--LCSDQKDIVTFSECIKRSGYSSPIRTPRG 355
DA LI+ KINLI +N ++ +CS ++ F + + +G +R G
Sbjct: 295 DARKLIRFASRFFCKINLIDYNSIVNIKFEPVCSSTRER--FRDRLLDAGLQVTVRKSYG 352
Query: 356 LDILAACGQL 365
I AACGQL
Sbjct: 353 TTINAACGQL 362
>gnl|CDD|172940 PRK14465, PRK14465, ribosomal RNA large subunit methyltransferase
N; Provisional.
Length = 342
Score = 190 bits (484), Expect = 5e-49
Identities = 126/370 (34%), Positives = 186/370 (50%), Gaps = 43/370 (11%)
Query: 9 LIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF 68
L G +EL E ++ +G + R QI+ +YV + + S+EV+ L +
Sbjct: 7 LKGRTLKELSEIMVSLGEK----KFRAKQIYHGLYVNRYETWDQFTTFSKEVKEKLEELC 62
Query: 69 SIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIP--EKSRGTLCVSSQVGCSL 126
S+ E+V + S DGT+K+ G E E V+IP + R T+C+SSQ+GC+L
Sbjct: 63 SLTELEVVKDLKSVDGTQKFTF-----YSGEGKEFEAVWIPSGDGGRKTICISSQIGCTL 117
Query: 127 TCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMG 186
C FC T + NL A EI+ QVL ++GD + +N+V MG
Sbjct: 118 NCKFCATAKLEFQGNLKAHEIVDQVLQVEKIVGD-----------------RATNVVFMG 160
Query: 187 MGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGE-EIGVMLAISLHA 245
MGEP+ N+ NV ++ SI D + +RIT+STSG V I R E + AISL+
Sbjct: 161 MGEPMHNYFNVIRAASILHDPDAFNLGAKRITISTSGVVNGIRRFIENKEPYNFAISLNH 220
Query: 246 VSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKI 305
+ R ++ I K+PLE L+ A + + RRITFEYVM+ G+N +A L+KI
Sbjct: 221 PDPNGRLQIMDIEEKFPLEELLQAAKDFTR-ELKRRITFEYVMIPGVNMGRENANKLVKI 279
Query: 306 LKGIPAKINLIPFNPWPGCEYLC---SDQKDIVTFSECIKRSGYSSPI---RTPRGLDIL 359
+ + KIN+IP N E+ ++ F ++ +G PI R+P G DI
Sbjct: 280 ARSLDCKINVIPLN----TEFFGWRRPTDDEVAEFIMLLEPAG--VPILNRRSP-GKDIF 332
Query: 360 AACGQLKSLS 369
ACG L S S
Sbjct: 333 GACGMLASKS 342
>gnl|CDD|184685 PRK14453, PRK14453, chloramphenicol/florfenicol resistance protein;
Provisional.
Length = 347
Score = 182 bits (463), Expect = 2e-46
Identities = 112/345 (32%), Positives = 166/345 (48%), Gaps = 41/345 (11%)
Query: 34 RTSQIWKWIYVRGIRDFQGMSDISQEVRHLLNQHF--SIIYPEIVDEKISCDGTRKWLLR 91
R QI K I+ + I +F+ M + + +R L F +++ V E+ S T K L
Sbjct: 23 RYEQITKAIFKQRIDNFEDMHILPKALRESLINEFGKNVLSVIPVFEQDSKQVT-KVLFE 81
Query: 92 FPARCIGGPVEIETVYIPEKSRG--TLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILL 149
IE V + K +G + C+SSQ GC C FC TG+ L RNLTA+EI
Sbjct: 82 LT-----DGERIEAVGLKYK-QGWESFCISSQCGCGFGCRFCATGSIGLKRNLTADEITD 135
Query: 150 QVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMG 209
Q+L G ++ +I MGMGE L N + +L I +D
Sbjct: 136 QLLYFYLN------------------GHRLDSISFMGMGEALAN-PELFDALKILTDPNL 176
Query: 210 LSFSKRRITLSTSGFVPNIARVGEEI-GVMLAISLHAVSNDLRNILVPINRKYPLEMLID 268
S+RRIT+ST G +P I R+ +E V L SLH+ R+ L+PIN+++PL ++
Sbjct: 177 FGLSQRRITISTIGIIPGIQRLTQEFPQVNLTFSLHSPFESQRSELMPINKRFPLNEVMK 236
Query: 269 AC-RHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPA-----KINLIPFNPWP 322
H R++ Y+ML+G+NDS A ++ +L+ + +NLIP+N
Sbjct: 237 TLDEHI--RHTGRKVYIAYIMLEGVNDSKEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTD 294
Query: 323 GC--EYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
++ S I F +K +G S +RT G DI AACGQL
Sbjct: 295 KTPFKFQSSSAGQIKQFCSTLKSAGISVTVRTQFGSDISAACGQL 339
>gnl|CDD|172945 PRK14470, PRK14470, ribosomal RNA large subunit methyltransferase
N; Provisional.
Length = 336
Score = 173 bits (439), Expect = 8e-44
Identities = 105/289 (36%), Positives = 145/289 (50%), Gaps = 29/289 (10%)
Query: 83 DGTRKWLLRFPARCIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRN 141
DG RK+L P G +E V IP + +C+SSQ GC+L C+FC TG L R+
Sbjct: 70 DGFRKYLFELP---DGL--RVEAVRIPLFDTHHVVCLSSQAGCALGCAFCATGKLGLDRS 124
Query: 142 LTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSL 201
L + EI+ Q+L R D E R I+ +V MG GEP N+D V ++
Sbjct: 125 LRSWEIVAQLLAVR---------ADSE--------RPITGVVFMGQGEPFLNYDEVLRAA 167
Query: 202 SIASDSMGLSFSKRRITLSTSGFVPNIAR-VGEEIGVMLAISLHAVSNDLRNILVPINRK 260
D G RRI++ST+G VP I R E L ISL+A R L+PI +
Sbjct: 168 YALCDPAGARIDGRRISISTAGVVPMIRRYTAEGHKFRLCISLNAAIPWKRRALMPIEQG 227
Query: 261 YPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNP 320
+PL+ L++A R + L R+T EYVM+ G+N DA L ++L GIP ++N I N
Sbjct: 228 FPLDELVEAIREHAALRG--RVTLEYVMISGVNVGEEDAAALGRLLAGIPVRLNPIAVND 285
Query: 321 WPGCEYLCSDQKDIVTFSECIKRSGYSSPI--RTPRGLDILAACGQLKS 367
G Y D+ + F + + R +P+ R G D AACG L S
Sbjct: 286 ATG-RYRPPDEDEWNAFRDALARELPGTPVVRRYSGGQDEHAACGMLAS 333
>gnl|CDD|184691 PRK14464, PRK14464, ribosomal RNA large subunit methyltransferase
N; Provisional.
Length = 344
Score = 143 bits (362), Expect = 8e-35
Identities = 90/288 (31%), Positives = 140/288 (48%), Gaps = 42/288 (14%)
Query: 103 IETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFP 162
+E+V +P R LCVS+QVGC++ C FC TG L+R L + EI+ QV+LAR
Sbjct: 88 VESVLLP---RDGLCVSTQVGCAVGCVFCMTGRSGLLRQLGSAEIVAQVVLARRR----- 139
Query: 163 GCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTS 222
R + +V MGMGEP N DNV +++ + G+ + + ST
Sbjct: 140 --------------RAVKKVVFMGMGEPAHNLDNVLEAIDLLGTEGGI--GHKNLVFSTV 183
Query: 223 GFVPNIARVGEEIGVM-----LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS 277
G RV E + LA+SLH +LR L+P + E L++ Y
Sbjct: 184 G----DPRVFERLPQQRVKPALALSLHTTRAELRARLLPRAPRIAPEELVELGEAY---- 235
Query: 278 NARR----ITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKD 333
AR I +++ +L+G+NDS + ++++LKG A +NLIP+N G Y +
Sbjct: 236 -ARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLKGKYAVMNLIPYNSVDGDAYRRPSGER 294
Query: 334 IVTFSECIKRSGYSSPIRTPRGLDILAACGQLKSLSKRIPKVPRQEMQ 381
IV + + R G + +R G D+ CGQL++ + + V R +
Sbjct: 295 IVAMARYLHRRGVLTKVRNSAGQDVDGGCGQLRARAAKAAAVRRIRRR 342
>gnl|CDD|128968 smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM.
This superfamily contains MoaA, NifB, PqqE,
coproporphyrinogen III oxidase, biotin synthase and MiaB
families, and includes a representative in the
eukaryotic elongator subunit, Elp-3. Some members of the
family are methyltransferases.
Length = 216
Score = 36.2 bits (84), Expect = 0.015
Identities = 39/207 (18%), Positives = 86/207 (41%), Gaps = 28/207 (13%)
Query: 123 GCSLTCSFCYTGTQ-KLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISN 181
GC C+FC + +R+ E ++ +IE + +
Sbjct: 10 GCPRRCTFCSFPSARGKLRSRYLEALV----------------REIELLAEKGEKEILVG 53
Query: 182 IVMMGMGEPLCN-FDNVKKSLSIASDSMGLSFSKRRITLSTSGFV-PNIARVGEEIGV-M 238
V +G G P + +++ L + +GL+ + G + + +E GV
Sbjct: 54 TVFIGGGTPTLLSPEQLEELLEAIREILGLADDVEITIETRPGTLTEELLEALKEAGVNR 113
Query: 239 LAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGI-NDSPR 297
+++ + + S+++ INR + +E +++A L A I ++ G+ ++
Sbjct: 114 VSLGVQSGSDEVLKA---INRGHTVEDVLEAVEK---LREAGPIKVSTDLIVGLPGETEE 167
Query: 298 DALNLIKILKGI-PAKINLIPFNPWPG 323
D +K+LK + P ++++ P +P PG
Sbjct: 168 DFEETLKLLKELGPDRVSIFPLSPRPG 194
>gnl|CDD|131546 TIGR02493, PFLA, pyruvate formate-lyase 1-activating enzyme. An
iron-sulfur protein with a radical-SAM domain
(pfam04055). A single glycine residue in EC 2.3.1.54,
formate C-acetyltransferase (formate-pyruvate lyase), is
oxidized to the corresponding radical by transfer of H
from its CH2 to AdoMet with concomitant cleavage of the
latter. The reaction requires Fe2+. The first stage is
reduction of the AdoMet to give methionine and the
5'-deoxyadenosin-5-yl radical, which then abstracts a
hydrogen radical from the glycine residue.
Length = 235
Score = 33.5 bits (77), Expect = 0.088
Identities = 43/216 (19%), Positives = 76/216 (35%), Gaps = 62/216 (28%)
Query: 123 GCSLTCSFCY---TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKI 179
GC L C +C+ T K +T EE++ +V + G G
Sbjct: 24 GCPLRCQYCHNPDTWDLKGGTEVTPEELIKEVGSYKDFFKASGGGVTFSG---------- 73
Query: 180 SNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVML 239
GEPL + + + A +G+ L TSGF+ +E +L
Sbjct: 74 --------GEPLLQPEFLSELFK-ACKELGI-----HTCLDTSGFLGGCTEAADE---LL 116
Query: 240 AISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP--GLSNARRITF------------- 284
+ DL +L+ I + ++ G+S + F
Sbjct: 117 EYT------DL--VLLDIKH-------FNPEKYKKLTGVSLQPTLDFAKYLAKRNKPIWI 161
Query: 285 EYVMLKGINDSPRDALNLIKILKGIP--AKINLIPF 318
YV++ G DS D L + +K +P ++ ++P+
Sbjct: 162 RYVLVPGYTDSEEDIEALAEFVKTLPNVERVEVLPY 197
>gnl|CDD|132492 TIGR03451, mycoS_dep_FDH, mycothiol-dependent formaldehyde
dehydrogenase. Members of this protein family are
mycothiol-dependent formaldehyde dehydrogenase (EC
1.2.1.66). This protein is found, so far, only in the
Actinobacteria (Mycobacterium sp., Streptomyces sp.,
Corynebacterium sp., and related species), where
mycothione replaces glutathione.
Length = 358
Score = 30.2 bits (68), Expect = 0.96
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 94 ARCIGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYT 133
AR G PVE+ET+ +P+ G + V Q C C+T
Sbjct: 7 ARSKGAPVELETIVVPDPGPGEVIVDIQ-----ACGVCHT 41
>gnl|CDD|183094 PRK11347, PRK11347, antitoxin ChpS; Provisional.
Length = 83
Score = 29.6 bits (66), Expect = 1.5
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 7/60 (11%)
Query: 216 RITL----STSGFV-PNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDAC 270
RIT+ +++G V PNI V +E+ + S+ A ++ + IL PI+R+Y L+ L+ C
Sbjct: 2 RITIKRWGNSAGMVIPNI--VMKELNLQPGQSVEAQVSNNQLILTPISRRYSLDELLAQC 59
>gnl|CDD|165022 PHA02639, PHA02639, EEV host range protein; Provisional.
Length = 295
Score = 28.5 bits (63), Expect = 2.9
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 53 MSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKW 88
M + E+ ++ N+H + Y + +EKI+C + W
Sbjct: 102 MYKVGDEIYYVCNEHKGVQYSLVGNEKITCIQDKSW 137
>gnl|CDD|184623 PRK14326, PRK14326, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 502
Score = 27.7 bits (62), Expect = 4.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 118 VSSQVGCSLTCSFC 131
VS VGC+ TC+FC
Sbjct: 161 VSISVGCNNTCTFC 174
>gnl|CDD|183496 PRK12393, PRK12393, amidohydrolase; Provisional.
Length = 457
Score = 27.7 bits (62), Expect = 5.2
Identities = 19/68 (27%), Positives = 24/68 (35%), Gaps = 22/68 (32%)
Query: 256 PINRKYPLEMLIDA--CRHYPGLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKI 313
+ P E +IDA C YPG N F+ +LKG+PA I
Sbjct: 40 ALTPL-PGERVIDATDCVVYPGWVNTHHHLFQ------------------SLLKGVPAGI 80
Query: 314 NLIPFNPW 321
N W
Sbjct: 81 NQ-SLTAW 87
>gnl|CDD|162888 TIGR02495, NrdG2, anaerobic ribonucleoside-triphosphate reductase
activating protein. This enzyme is a member of the
radical-SAM family (pfam04055). It is often gene
clustered with the class III (anaerobic) ribonucleotide
triphosphate reductase (NrdD, TIGR02487) and presumably
fulfills the identical function as NrdG which utilizes
S-adenosyl methionine, an iron-sulfur cluster and a
reductant (dihydroflavodoxin) to produce a
glycine-centered radical in NrdD.
Length = 191
Score = 27.0 bits (60), Expect = 7.9
Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 13/78 (16%)
Query: 97 IGGPVEIETVYIPEKSRGTLCVSSQVGCSLTCSFCYTGTQKLVR--NLTAEEILLQVLLA 154
I G V + P K T+ GC+L C +C+ E LL+ L +
Sbjct: 2 IAGLVPFSMLDYPGKLAFTIFFQ---GCNLKCPYCHNPELIDREGSGEIEVEFLLEFLRS 58
Query: 155 RSLLGDFPGCEDIEGMVI 172
R L I+G+VI
Sbjct: 59 RQGL--------IDGVVI 68
>gnl|CDD|161682 TIGR00050, rRNA_methyl_1, RNA methyltransferase, TrmH family, group
1. This is part of the trmH (spoU) family of
S-adenosyl-L-methionine (AdoMet)-dependent
methyltransferases, and is now characterized, in E.
coli, as a tRNA:Cm32/Um32 methyltransferase. It may be
named TrMet(Xm32), or TrmJ, according to the
nomenclature style chosen.
Length = 233
Score = 27.0 bits (60), Expect = 8.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 14 REELEEALLKIGIPQRHVRMRTSQIWKWIYVR 45
E LEE LL +G H R + ++ +Y R
Sbjct: 179 LEHLEEILLSLGFIPEHKIRRVMRKFRRLYGR 210
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.323 0.140 0.421
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,312,592
Number of extensions: 407324
Number of successful extensions: 912
Number of sequences better than 10.0: 1
Number of HSP's gapped: 829
Number of HSP's successfully gapped: 35
Length of query: 384
Length of database: 5,994,473
Length adjustment: 95
Effective length of query: 289
Effective length of database: 3,941,713
Effective search space: 1139155057
Effective search space used: 1139155057
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.3 bits)