RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781120|ref|YP_003065533.1| radical SAM protein
[Candidatus Liberibacter asiaticus str. psy62]
         (384 letters)



>d1v9ja_ d.52.6.1 (A:) BolA-like protein {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 113

 Score = 27.1 bits (60), Expect = 2.3
 Identities = 9/41 (21%), Positives = 15/41 (36%)

Query: 45 RGIRDFQGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGT 85
          RG      M   +  +R  L Q     + E+ D  ++   T
Sbjct: 20 RGSEGAATMELSADYLREKLRQDLEAEHVEVEDTTLNRCAT 60


>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 180

 Score = 27.1 bits (59), Expect = 2.3
 Identities = 18/105 (17%), Positives = 32/105 (30%), Gaps = 8/105 (7%)

Query: 244 HAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDALNLI 303
           HAV    R I + I+    +E+            N    +    + +  N +P +  +  
Sbjct: 20  HAVVYGYRAISMAIDLTSTIEIKETQEDEIILNLNDLNKSLGLNLNEIKNINPNNFGDFK 79

Query: 304 KILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSS 348
             L  I   ++ +   P  G          I   S+     G  S
Sbjct: 80  YCLCAIKNTLDYLNIEPKTGF--------KINISSKIPISCGLGS 116


>d2g5da1 b.52.1.4 (A:40-441) Membrane-bound lytic murein
           transglycosylase A, MLTA {Neisseria gonorrhoeae [TaxId:
           485]}
          Length = 402

 Score = 26.1 bits (57), Expect = 5.3
 Identities = 5/35 (14%), Positives = 15/35 (42%), Gaps = 6/35 (17%)

Query: 61  RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPAR 95
           R++ ++        +   + S  G + ++ + P R
Sbjct: 253 RYMADKG------YLKLGQTSMQGIKAYMRQNPQR 281


>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 72

 Score = 25.8 bits (57), Expect = 5.4
 Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLS-NARRITFEYVMLKGINDSPRD 298
           I+L     D   +   I R  PL  L+ A     GLS    R  F+   +    D+P  
Sbjct: 2   INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINE-TDTPAQ 59


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.140    0.421 

Gapped
Lambda     K      H
   0.267   0.0570    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,472,254
Number of extensions: 71635
Number of successful extensions: 171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 8
Length of query: 384
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 297
Effective length of database: 1,213,086
Effective search space: 360286542
Effective search space used: 360286542
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.9 bits)