BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781120|ref|YP_003065533.1| radical SAM protein
[Candidatus Liberibacter asiaticus str. psy62]
(384 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781120|ref|YP_003065533.1| radical SAM protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 384
Score = 785 bits (2027), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/384 (100%), Positives = 384/384 (100%)
Query: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV
Sbjct: 1 MNFLKKESLIGMMREELEEALLKIGIPQRHVRMRTSQIWKWIYVRGIRDFQGMSDISQEV 60
Query: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS
Sbjct: 61 RHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPARCIGGPVEIETVYIPEKSRGTLCVSS 120
Query: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS
Sbjct: 121 QVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKIS 180
Query: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA
Sbjct: 181 NIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLA 240
Query: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL
Sbjct: 241 ISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITFEYVMLKGINDSPRDAL 300
Query: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA
Sbjct: 301 NLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDIVTFSECIKRSGYSSPIRTPRGLDILA 360
Query: 361 ACGQLKSLSKRIPKVPRQEMQITG 384
ACGQLKSLSKRIPKVPRQEMQITG
Sbjct: 361 ACGQLKSLSKRIPKVPRQEMQITG 384
>gi|254781065|ref|YP_003065478.1| L-lysine 2,3-aminomutase protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 352
Score = 30.8 bits (68), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 68/193 (35%), Gaps = 46/193 (23%)
Query: 124 CSLTCSFCY----TGTQKLVRNLTAEEILLQVLLARSLLGDFPGCEDIEG-MVIPSVGRK 178
C + C FC+ G+QK G +D E + +
Sbjct: 105 CPVYCRFCFRREMVGSQK---------------------GTVLSSKDTEAALAYIQEKSQ 143
Query: 179 ISNIVMMGMGEPLC----NFDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEE 234
I ++ G G+PL V K+L L F R + P + + +E
Sbjct: 144 IWEVIFTG-GDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRINPELIQCLKE 202
Query: 235 IGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYPGLSNARRITF-EYVMLKGIN 293
G + I++HA +P E +A L+NA I + V+LKGIN
Sbjct: 203 AGKPVYIAIHA--------------NHPYEFSEEAIAAISRLANAGIILLSQSVLLKGIN 248
Query: 294 DSPRDALNLIKIL 306
D P NL++
Sbjct: 249 DDPEILANLMRTF 261
>gi|255764472|ref|YP_003064841.2| 2-methylthioadenine synthetase (miaB-like) protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 469
Score = 25.0 bits (53), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 16/96 (16%)
Query: 111 KSRG-TLCVSSQVGCSLTCSFC---YTGTQKLVRNLTAEEILLQVLLARSLLGDFPGCED 166
+ RG T ++ Q GC C+FC YT ++ R+L+ QV+ L D CE
Sbjct: 172 RKRGVTAFLTIQEGCDKFCTFCVVPYTRGIEISRSLS------QVVDEARKLIDNGVCE- 224
Query: 167 IEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLS 202
I +G+ ++ G+ C F ++ SLS
Sbjct: 225 -----ITLLGQNVNAWRGKGLDGEKCTFSDLLYSLS 255
>gi|254780844|ref|YP_003065257.1| hypothetical protein CLIBASIA_03695 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 113
Score = 23.9 bits (50), Expect = 5.1, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 147 ILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183
+ L VL + LGD GCE + G + S G+K S+ V
Sbjct: 42 VALNVLSPLAPLGD--GCEQLVGATVHSEGKKRSHDV 76
>gi|254780353|ref|YP_003064766.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter asiaticus
str. psy62]
Length = 753
Score = 23.5 bits (49), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 194 FDNVKKSLSIASDSMGLSFSKRRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNI 253
F V + + A MGL F + F + VGE IG + +V + L +
Sbjct: 50 FKPVHRRIIHAMSEMGLDFG--------AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRL 101
Query: 254 LVPINRKYPL 263
P ++YPL
Sbjct: 102 AQPFVQRYPL 111
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.323 0.140 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 242,039
Number of Sequences: 1233
Number of extensions: 9942
Number of successful extensions: 28
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 6
length of query: 384
length of database: 328,796
effective HSP length: 76
effective length of query: 308
effective length of database: 235,088
effective search space: 72407104
effective search space used: 72407104
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 39 (19.6 bits)