Query gi|254781121|ref|YP_003065534.1| hypothetical protein CLIBASIA_05115 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 185
No_of_seqs 111 out of 516
Neff 8.5
Searched_HMMs 39220
Date Mon May 30 04:55:27 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781121.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 pfam06776 IalB Invasion associ 99.9 1.2E-20 3E-25 145.9 13.8 132 43-181 1-133 (133)
2 COG5342 Invasion protein B, in 99.8 7.2E-19 1.8E-23 135.0 12.5 138 38-183 40-179 (181)
3 pfam06674 DUF1176 Protein of u 98.8 1.2E-07 3E-12 66.4 11.7 132 39-183 11-144 (338)
4 TIGR03360 VI_minor_1 type VI s 85.2 2.9 7.3E-05 21.3 11.0 129 42-185 52-184 (185)
5 KOG0275 consensus 62.3 8.4 0.00021 18.4 3.0 26 125-150 408-433 (508)
6 pfam06460 NSP13 Coronavirus NS 49.3 19 0.00049 16.2 3.2 19 38-56 181-199 (300)
7 PRK09495 glnH glutamine ABC tr 44.7 23 0.00058 15.8 3.2 45 11-56 1-45 (247)
8 PRK10884 putative signal trans 41.8 25 0.00064 15.5 3.0 20 11-30 1-20 (206)
9 PRK13528 outer membrane recept 41.5 25 0.00065 15.5 2.8 29 10-38 4-32 (727)
10 TIGR00779 cad cadmium resistan 38.2 29 0.00073 15.2 4.1 44 5-48 127-170 (196)
11 COG4305 Endoglucanase C-termin 26.7 45 0.0011 14.0 3.6 70 99-170 138-211 (232)
12 TIGR01829 AcAcCoA_reduct aceto 26.1 28 0.00071 15.2 0.9 43 138-180 116-167 (244)
13 PRK10756 hypothetical protein; 25.4 47 0.0012 13.8 2.9 37 28-65 15-60 (156)
14 pfam04027 DUF371 Domain of unk 24.8 48 0.0012 13.8 2.9 24 135-158 108-131 (132)
15 COG4549 Uncharacterized protei 24.4 49 0.0013 13.7 2.3 46 11-56 1-47 (178)
16 COG2854 Ttg2D ABC-type transpo 21.7 56 0.0014 13.4 3.1 23 10-32 2-24 (202)
No 1
>pfam06776 IalB Invasion associated locus B (IalB) protein. This family consists of several invasion associated locus B (IalB) proteins and related sequences. IalB is known to be a major virulence factor in Bartonella bacilliformis where it was shown to have a direct role in human erythrocyte parasitism. IalB is upregulated in response to environmental cues signaling vector-to-host transmission. Such environmental cues would include, but not be limited to, temperature, pH, oxidative stress, and haemin limitation. It is also thought that IalB would aide B. bacilliformis survival under stress-inducing environmental conditions. The role of this protein in other bacterial species is unknown.
Probab=99.86 E-value=1.2e-20 Score=145.94 Aligned_cols=132 Identities=17% Similarity=0.221 Sum_probs=106.7
Q ss_pred CCCEEEEEEECCC-CCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEEECCCCCCCEEEEECCCCCCCC
Q ss_conf 3775899993598-716556641200023444555530579986178776103689831034677726999716655544
Q gi|254781121|r 43 FSRWSVYVYPDLN-KKLCFSLSVPVTVEPLEGVRHGVNFFIISLKKEENSAYVSELVMDYPLDEEEMVSLEVKGKNASGT 121 (185)
Q Consensus 43 f~dW~v~~~~~~~-~~~C~i~s~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~vs~~~gy~~~~~~~v~l~Id~~~~~~~ 121 (185)
||||++.|.+.++ ++.|.+.|.-...+ ++..+..+...+..++....+.+..|+++.+..++.+.||+++. .
T Consensus 1 fgdW~~~C~~~~~~~~~C~~~Q~~~~~~-----~~~~v~~~~i~~~~~~~~~~~~i~~Plg~~L~~gv~l~vD~~~~--~ 73 (133)
T pfam06776 1 FGDWTLRCDKQEEAKDVCNLSQLLVDEE-----TGQPVAAVSLIRLADGGKAVLTVVVPLGVLLPAGVRLSVDGGKP--V 73 (133)
T ss_pred CCCCEEEECCCCCCCCCCEEEEEEEECC-----CCCEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCEEEECCCCC--E
T ss_conf 9980789178988878647899998278-----99789999999768998079999828846569874899889883--0
Q ss_pred CCCEECCCCCCEECCCCCCHHHHHHHHCCCEEEEEEECCCCCEEEEEEECCCHHHHHHHH
Q ss_conf 431000378741024566967899973677699999918998899985144289999988
Q gi|254781121|r 122 IFKMKSYNNRAAFEKRSQDTVLIEEMKRGKELVVSAKSKRGTNTRYIYSLIGLSDSLADI 181 (185)
Q Consensus 122 ~~~~~~~~~~a~~~~~~~d~~~i~amk~G~~~~v~~~s~~g~~~~~~~SL~GFt~A~~~~ 181 (185)
+++|.+|.+.||++....++.++++||+|+.++|.+...+|++++.++||+||++||+++
T Consensus 74 ~~~~~~C~~~GC~a~~~l~~~~l~~lk~g~~~~i~~~~~~~~~v~i~~sL~Gf~~A~~~L 133 (133)
T pfam06776 74 RLPFSTCLPNGCVAEIPLDDALLAALKKGKTATLSFVPAPGQPVTIPVSLKGFTAALDAL 133 (133)
T ss_pred EEEEEEECCCCEEEEEECCHHHHHHHHCCCEEEEEEECCCCCEEEEEEECCCHHHHHHHC
T ss_conf 862168878846998776999999987799799999917999899988543479899619
No 2
>COG5342 Invasion protein B, involved in pathogenesis [General function prediction only]
Probab=99.81 E-value=7.2e-19 Score=135.00 Aligned_cols=138 Identities=14% Similarity=0.228 Sum_probs=114.0
Q ss_pred HHHCCCCCEEEEEEECC-CCCEEEEEECCCCCCCCCCCCCCCEEEEE-EECCCCCCCEEEEEEEEECCCCCCCEEEEECC
Q ss_conf 11012377589999359-87165566412000234445555305799-86178776103689831034677726999716
Q gi|254781121|r 38 TLRNQFSRWSVYVYPDL-NKKLCFSLSVPVTVEPLEGVRHGVNFFII-SLKKEENSAYVSELVMDYPLDEEEMVSLEVKG 115 (185)
Q Consensus 38 ~~~~~f~dW~v~~~~~~-~~~~C~i~s~p~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~vs~~~gy~~~~~~~v~l~Id~ 115 (185)
...++|++|++.|...+ +..+|.+.+.-+. .+++...+.+ ..+.+...+....+.+|+++.+-.++.++||+
T Consensus 40 ~~~~~~g~W~v~C~~~~~~~~~C~l~q~v~a------~~~~~~~l~v~i~~~~~~~~~~~~v~~P~G~llp~Gv~lqiD~ 113 (181)
T COG5342 40 TLKETHGAWSVNCSKQEGDNDQCALSQNVTA------ANGQQRVLSVEIRRTADNGRKILTVLVPFGLLLPKGVSLQIDD 113 (181)
T ss_pred CCCCCCCCEEEEECCCCCCCCHHHHHHHHHH------HCCCEEEEEEEEEEECCCCCEEEEEEECCCEECCCCCEEEECC
T ss_conf 6667888607875577788633788889987------1477389999999954778488999703320137971577579
Q ss_pred CCCCCCCCCEECCCCCCEECCCCCCHHHHHHHHCCCEEEEEEECCCCCEEEEEEECCCHHHHHHHHHH
Q ss_conf 65554443100037874102456696789997367769999991899889998514428999998873
Q gi|254781121|r 116 KNASGTIFKMKSYNNRAAFEKRSQDTVLIEEMKRGKELVVSAKSKRGTNTRYIYSLIGLSDSLADIRK 183 (185)
Q Consensus 116 ~~~~~~~~~~~~~~~~a~~~~~~~d~~~i~amk~G~~~~v~~~s~~g~~~~~~~SL~GFt~A~~~~~k 183 (185)
++. -+..|.+|.+.||.+....|++++.+||+|..+++..+..++++..+++||+||+.||+++..
T Consensus 114 ~k~--~~~~f~~C~p~GC~A~v~l~~~ll~~Lk~Gt~l~~~~~~~~~~~v~i~v~LkGF~~ald~l~~ 179 (181)
T COG5342 114 GKI--GKLYFVTCFPDGCYAEVPLDDELLAALKSGTTLTFTSTADQEQPVPIPVSLKGFGEALDRLPE 179 (181)
T ss_pred CCC--EEEEEEEECCCCEEEEEECCHHHHHHHHCCCEEEEEEECCCCCCCEEEEECCCHHHHHHHCHH
T ss_conf 853--037899964786489862799999997579848998751578874047864654777610110
No 3
>pfam06674 DUF1176 Protein of unknown function (DUF1176). This family consists of several hypothetical bacterial proteins of around 340 residues in length. Members of this family contain six highly conserved cysteine residues. The function of this family is unknown.
Probab=98.81 E-value=1.2e-07 Score=66.41 Aligned_cols=132 Identities=17% Similarity=0.241 Sum_probs=87.3
Q ss_pred HHCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEEECCCC--CCCEEEEECCC
Q ss_conf 1012377589999359871655664120002344455553057998617877610368983103467--77269997166
Q gi|254781121|r 39 LRNQFSRWSVYVYPDLNKKLCFSLSVPVTVEPLEGVRHGVNFFIISLKKEENSAYVSELVMDYPLDE--EEMVSLEVKGK 116 (185)
Q Consensus 39 ~~~~f~dW~v~~~~~~~~~~C~i~s~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~vs~~~gy~~~~--~~~v~l~Id~~ 116 (185)
....|+||+|.|-+ ...|.+...+-. . ......+.++..-+.+....+.+..+.+... .....+.||++
T Consensus 11 ~~~~~kDW~v~CDN---t~tC~A~gy~~~-----~-~~~~~sl~ltR~AGa~~~v~~~v~l~~~~~~~~~~~~~L~iDg~ 81 (338)
T pfam06674 11 LYFSFKDWQVVCDN---TNTCRAAGYGSD-----D-GDAPVSLLLTRSAGPGAQVELRLSLGEPDPDIPTGALRLLIDGK 81 (338)
T ss_pred CEEEECCEEEECCC---CCCEEECCCCCC-----C-CCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCEEEECCC
T ss_conf 40451784896899---774666025676-----7-98736999997668999859999927744557887608998994
Q ss_pred CCCCCCCCEECCCCCCEECCCCCCHHHHHHHHCCCEEEEEEECCCCCEEEEEEECCCHHHHHHHHHH
Q ss_conf 5554443100037874102456696789997367769999991899889998514428999998873
Q gi|254781121|r 117 NASGTIFKMKSYNNRAAFEKRSQDTVLIEEMKRGKELVVSAKSKRGTNTRYIYSLIGLSDSLADIRK 183 (185)
Q Consensus 117 ~~~~~~~~~~~~~~~a~~~~~~~d~~~i~amk~G~~~~v~~~s~~g~~~~~~~SL~GFt~A~~~~~k 183 (185)
.........-......|.-+......++.+||.|.++++.. ..|+ .-+.||.|.++|+=.|++
T Consensus 82 ~lg~~~~~~~~~~~~~~~l~~~qv~alL~al~~~~~i~~~~--~~g~--~~~lSl~G~~AaLLkmDe 144 (338)
T pfam06674 82 PLGALGAAWQAATDNELTLTGAQVTALLQALRNGSKISLKD--GAGD--RWTLSLSGLSAALLKMDE 144 (338)
T ss_pred CCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEC--CCCC--EEEEECCCHHHHHHHHHH
T ss_conf 75666310045766431469899999999972598599980--8986--788764227889887764
No 4
>TIGR03360 VI_minor_1 type VI secretion-associated protein, VC_A0118 family. Members of this protein family, including VC_A0118 from Vibrio cholerae El Tor N16961, are restricted to a subset of bacteria with the type VI secretion system, and are encoded among the type VI-associated pathogenicity islands. However, many species with type VI secretion lack a member of this family. This lack suggests that members of this family may be targets rather than components of the type VI secretion system.
Probab=85.17 E-value=2.9 Score=21.28 Aligned_cols=129 Identities=16% Similarity=0.243 Sum_probs=73.0
Q ss_pred CCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEEECCCCCCCEEEEECCCCCCCC
Q ss_conf 23775899993598716556641200023444555530579986178776103689831034677726999716655544
Q gi|254781121|r 42 QFSRWSVYVYPDLNKKLCFSLSVPVTVEPLEGVRHGVNFFIISLKKEENSAYVSELVMDYPLDEEEMVSLEVKGKNASGT 121 (185)
Q Consensus 42 ~f~dW~v~~~~~~~~~~C~i~s~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~vs~~~gy~~~~~~~v~l~Id~~~~~~~ 121 (185)
....|-....+++.+..-++ +.|-. +... ..+++.+=. ++ ...+.+..+-|...+ .|.++++++.....
T Consensus 52 ~~s~~fl~~~~~~~~~~~~i-t~pAi-----g~~~-pPvLmlSCi-dn--ITrlql~Lp~p~~~~-rV~Vsl~g~~~~~~ 120 (185)
T TIGR03360 52 PESGAFLLTQEEGSGSMTLI-RTPAI-----GETP-PPVLMISCV-DN--ITRLQLALPKPVAGS-RVQVSLDGEGATVS 120 (185)
T ss_pred CCCCCEEEECCCCCCCCEEE-EECCC-----CCCC-CCEEEEEEC-CC--CEEEEEECCCCCCCC-CEEEEECCCCCCCC
T ss_conf 88876798526898864588-60104-----7999-956763510-36--114788648865588-37999658877557
Q ss_pred CCCEECCCCCCEECCCCCC---HHHHHHHHCCCEEEEEEECCCCCEEEEEEECCCHHHHHHHHHH-CC
Q ss_conf 4310003787410245669---6789997367769999991899889998514428999998873-49
Q gi|254781121|r 122 IFKMKSYNNRAAFEKRSQD---TVLIEEMKRGKELVVSAKSKRGTNTRYIYSLIGLSDSLADIRK-CN 185 (185)
Q Consensus 122 ~~~~~~~~~~a~~~~~~~d---~~~i~amk~G~~~~v~~~s~~g~~~~~~~SL~GFt~A~~~~~k-c~ 185 (185)
. .. .-.+.|.+-...-- -+.|..|-.+.+++|. |..|..=..+|.+.|+..|++-+++ |.
T Consensus 121 ~-~W-~~re~G~ll~sgRGLpaIe~iK~l~~~~~L~lr--s~~~~~dgL~Fd~~gL~~ai~PLR~aC~ 184 (185)
T TIGR03360 121 Q-SW-FVRENGLLLESGRGLPAIEEIKRLIGARRLTVR--GDNGAADGLRFDLSGLNEALDPLRQQCH 184 (185)
T ss_pred C-EE-EECCCCEEEECCCCCHHHHHHHHHHCCCEEEEE--CCCCCCCCEEEEHHHHHHHHHHHHHHCC
T ss_conf 4-04-884896498637993699999998479869997--5898755268882526888899998659
No 5
>KOG0275 consensus
Probab=62.29 E-value=8.4 Score=18.42 Aligned_cols=26 Identities=8% Similarity=0.100 Sum_probs=9.2
Q ss_pred EECCCCCCEECCCCCCHHHHHHHHCC
Q ss_conf 00037874102456696789997367
Q gi|254781121|r 125 MKSYNNRAAFEKRSQDTVLIEEMKRG 150 (185)
Q Consensus 125 ~~~~~~~a~~~~~~~d~~~i~amk~G 150 (185)
|..|+..--+.-..+...++..|..|
T Consensus 408 ~iVCNrsntv~imn~qGQvVrsfsSG 433 (508)
T KOG0275 408 FIVCNRSNTVYIMNMQGQVVRSFSSG 433 (508)
T ss_pred EEEECCCCEEEEEECCCEEEEEECCC
T ss_conf 89972787499996345277620367
No 6
>pfam06460 NSP13 Coronavirus NSP13. This family covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase function.
Probab=49.27 E-value=19 Score=16.22 Aligned_cols=19 Identities=21% Similarity=0.378 Sum_probs=15.6
Q ss_pred HHHCCCCCEEEEEEECCCC
Q ss_conf 1101237758999935987
Q gi|254781121|r 38 TLRNQFSRWSVYVYPDLNK 56 (185)
Q Consensus 38 ~~~~~f~dW~v~~~~~~~~ 56 (185)
++.+.|..|++||...+..
T Consensus 181 ~l~~~F~~wt~FCT~VNaS 199 (300)
T pfam06460 181 ELMQYFSFWTMFCTNVNTS 199 (300)
T ss_pred HHHHHHHHEEEEEEECCCC
T ss_conf 9985411205764102676
No 7
>PRK09495 glnH glutamine ABC transporter periplasmic protein; Reviewed
Probab=44.67 E-value=23 Score=15.78 Aligned_cols=45 Identities=7% Similarity=0.050 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEEEEECCCC
Q ss_conf 9999999999999999865433210101101237758999935987
Q gi|254781121|r 11 VPRIRFLIVLMVSSVSAGYANASQPEPTLRNQFSRWSVYVYPDLNK 56 (185)
Q Consensus 11 m~~~~~~~~~~~~~~~~~~a~a~~~~~~~~~~f~dW~v~~~~~~~~ 56 (185)
||++..++++++++++...+.|+. ..-.+++-.+|-=|.+.+++.
T Consensus 1 mk~~~~~~~~~~~~~~~~~~~a~~-~~l~Vg~~~~~pPf~f~~~g~ 45 (247)
T PRK09495 1 MKSVLKVSLAALTLAFAVSSHAAD-KELVVATDTAFVPFEFKQGDK 45 (247)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCC-CEEEEEECCCCCCEEECCCCE
T ss_conf 977999999999999987665149-949999899879805767992
No 8
>PRK10884 putative signal transduction protein; Provisional
Probab=41.80 E-value=25 Score=15.51 Aligned_cols=20 Identities=10% Similarity=0.418 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999998654
Q gi|254781121|r 11 VPRIRFLIVLMVSSVSAGYA 30 (185)
Q Consensus 11 m~~~~~~~~~~~~~~~~~~a 30 (185)
|+++.++.++++.+.+...+
T Consensus 1 m~~l~~~~~~~l~~~~~~~~ 20 (206)
T PRK10884 1 MPKLRLIGLTLLALSATAVS 20 (206)
T ss_pred CCCCCHHHHHHHHHHHHHHH
T ss_conf 97401399999998645777
No 9
>PRK13528 outer membrane receptor FepA; Provisional
Probab=41.51 E-value=25 Score=15.48 Aligned_cols=29 Identities=10% Similarity=0.305 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 99999999999999999865433210101
Q gi|254781121|r 10 FVPRIRFLIVLMVSSVSAGYANASQPEPT 38 (185)
Q Consensus 10 ~m~~~~~~~~~~~~~~~~~~a~a~~~~~~ 38 (185)
+-+|..+++.++++.+++..+++++++..
T Consensus 4 ~~~~~~~~~~~~~~~l~~~~~a~~~~~~~ 32 (727)
T PRK13528 4 RANKILWLLTVVLAGLNSQLSAAESSDDD 32 (727)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 04669999999999875055565334677
No 10
>TIGR00779 cad cadmium resistance transporter family protein; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export..
Probab=38.24 E-value=29 Score=15.17 Aligned_cols=44 Identities=27% Similarity=0.353 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCEEE
Q ss_conf 77998999999999999999998654332101011012377589
Q gi|254781121|r 5 VLKDFFVPRIRFLIVLMVSSVSAGYANASQPEPTLRNQFSRWSV 48 (185)
Q Consensus 5 ~~~~~~m~~~~~~~~~~~~~~~~~~a~a~~~~~~~~~~f~dW~v 48 (185)
.|..+++..+.|+++..+....+--.++...-.+..|+|+.|=+
T Consensus 127 s~~~l~~t~ivFlImv~~l~f~~yrLA~f~~isE~~Eky~RWI~ 170 (196)
T TIGR00779 127 SMTELLVTLIVFLIMVAVLCFVAYRLAAFDFISETVEKYSRWIV 170 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH
T ss_conf 59999999999999999999998887427863025542675004
No 11
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=26.69 E-value=45 Score=13.98 Aligned_cols=70 Identities=14% Similarity=0.164 Sum_probs=50.2
Q ss_pred EEECCCCCCC---EEEEECCCCCCCCCCCEECCCCCCEECCCCCCHHHHHHHHCCC-EEEEEEECCCCCEEEEEEE
Q ss_conf 3103467772---6999716655544431000378741024566967899973677-6999999189988999851
Q gi|254781121|r 99 MDYPLDEEEM---VSLEVKGKNASGTIFKMKSYNNRAAFEKRSQDTVLIEEMKRGK-ELVVSAKSKRGTNTRYIYS 170 (185)
Q Consensus 99 ~gy~~~~~~~---v~l~Id~~~~~~~~~~~~~~~~~a~~~~~~~d~~~i~amk~G~-~~~v~~~s~~g~~~~~~~S 170 (185)
.-|.+|.+|. ..+++.+++... ..+..|.+..|+.-++.|-+-.-.-+-|. .+.++.+.-||+...|+..
T Consensus 138 ~~YRiKeGSs~WWAAIQVRnH~yPV--~KlE~~qdg~WinlpK~dYNhFVgT~LG~~pL~~RmTDIRG~~l~DtlP 211 (232)
T COG4305 138 FTYRIKEGSSRWWAAIQVRNHKYPV--MKLEYEQDGKWINLPKMDYNHFVGTNLGTGPLKVRMTDIRGKVLKDTLP 211 (232)
T ss_pred EEEEEECCCCCCEEEEEEECCCCCE--EEEEEECCCEEEECCCCCCCEEECCCCCCCCEEEEEEECCCCEEECCCC
T ss_conf 7999705875212235550366746--8999953884862443555535112248885279976123605300365
No 12
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase; InterPro: IPR011283 This entry represent acetoacetyl-CoA reductase, a member of the family short-chain-alcohol dehydrogenases. Note that, despite the precision implied by the enzyme name, the reaction of 1.1.1.36 from EC is defined more generally as (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. ; GO: 0018454 acetoacetyl-CoA reductase activity, 0042619 poly-hydroxybutyrate biosynthetic process, 0005737 cytoplasm.
Probab=26.12 E-value=28 Score=15.24 Aligned_cols=43 Identities=26% Similarity=0.319 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHCCCEEEEEEECC-CCCE---EEEEEE-----CCCHHHHHHH
Q ss_conf 66967899973677699999918-9988---999851-----4428999998
Q gi|254781121|r 138 SQDTVLIEEMKRGKELVVSAKSK-RGTN---TRYIYS-----LIGLSDSLAD 180 (185)
Q Consensus 138 ~~d~~~i~amk~G~~~~v~~~s~-~g~~---~~~~~S-----L~GFt~A~~~ 180 (185)
-..+.+++.|+.-.-..|.=+|| +|.| =.-.|| +.|||+||.+
T Consensus 116 NVT~pV~~gM~eRGwGRIiNISSvNG~KGQfGQtNYSAAKAG~iGFTkALA~ 167 (244)
T TIGR01829 116 NVTRPVIEGMRERGWGRIINISSVNGQKGQFGQTNYSAAKAGMIGFTKALAQ 167 (244)
T ss_pred CCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 5540014766216884168841214775654304589886215677799997
No 13
>PRK10756 hypothetical protein; Provisional
Probab=25.41 E-value=47 Score=13.84 Aligned_cols=37 Identities=16% Similarity=0.081 Sum_probs=15.6
Q ss_pred HHHHHHHCCCHHHCCCCCE-------EEEEEECC--CCCEEEEEECC
Q ss_conf 6543321010110123775-------89999359--87165566412
Q gi|254781121|r 28 GYANASQPEPTLRNQFSRW-------SVYVYPDL--NKKLCFSLSVP 65 (185)
Q Consensus 28 ~~a~a~~~~~~~~~~f~dW-------~v~~~~~~--~~~~C~i~s~p 65 (185)
....|++++.-...+-=+| .+..+.++ .+-+||+ |++
T Consensus 15 ~~~~a~Ae~ig~V~T~fk~lG~n~kIvVeAfdDP~V~GVTCyv-Sra 60 (156)
T PRK10756 15 LGPLAHAEEIGSVDTVFKMIGPDHKIVVEAFDDPDVKNVTCYV-SRA 60 (156)
T ss_pred HHHHHHHHHCCEEEEEEEEECCCCEEEEEEECCCCCCCEEEEE-EEE
T ss_conf 1013216334467788886459975999972699999778997-552
No 14
>pfam04027 DUF371 Domain of unknown function (DUF371). Archaeal domain of unknown function.
Probab=24.83 E-value=48 Score=13.77 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=19.8
Q ss_pred CCCCCCHHHHHHHHCCCEEEEEEE
Q ss_conf 245669678999736776999999
Q gi|254781121|r 135 EKRSQDTVLIEEMKRGKELVVSAK 158 (185)
Q Consensus 135 ~~~~~d~~~i~amk~G~~~~v~~~ 158 (185)
+..+++.++|++||.|..++|.-.
T Consensus 108 aA~Dl~Relv~~L~~g~~~~v~~~ 131 (132)
T pfam04027 108 AAADLDREIVEALKKGADLTVELI 131 (132)
T ss_pred CHHHCCHHHHHHHHCCCCEEEEEE
T ss_conf 223488999998738993699997
No 15
>COG4549 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.42 E-value=49 Score=13.73 Aligned_cols=46 Identities=13% Similarity=-0.040 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHCCCHHHCCCCCEEEEEEECCCC
Q ss_conf 999999999999-9999865433210101101237758999935987
Q gi|254781121|r 11 VPRIRFLIVLMV-SSVSAGYANASQPEPTLRNQFSRWSVYVYPDLNK 56 (185)
Q Consensus 11 m~~~~~~~~~~~-~~~~~~~a~a~~~~~~~~~~f~dW~v~~~~~~~~ 56 (185)
|+++++.++.++ .+++...++|+..-......=+.|..++.....+
T Consensus 1 mk~i~~~l~~~~~~~~~~~~AsAH~s~~~~ea~~gs~~~atlrVPhg 47 (178)
T COG4549 1 MKKIKLSLCALFALSLSTFTASAHVSLETGEAAAGSTYKATLRVPHG 47 (178)
T ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEEEECCCC
T ss_conf 94036889999998752332217887514655677427899966777
No 16
>COG2854 Ttg2D ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.69 E-value=56 Score=13.39 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999865433
Q gi|254781121|r 10 FVPRIRFLIVLMVSSVSAGYANA 32 (185)
Q Consensus 10 ~m~~~~~~~~~~~~~~~~~~a~a 32 (185)
+|++..++..+++..+....+.+
T Consensus 2 ~m~k~l~~~~ll~~a~a~~~~~~ 24 (202)
T COG2854 2 MMKKSLTILALLVIAFASSLAAA 24 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 38999999999999999888763
Done!