RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781121|ref|YP_003065534.1| hypothetical protein
CLIBASIA_05115 [Candidatus Liberibacter asiaticus str. psy62]
         (185 letters)



>3dtd_A Invasion-associated protein B; structural genomics, PSI-2,
           protein structure initiative, NEW YORK structural
           genomix research consortium; 2.35A {Bartonella henselae}
           (A:)
          Length = 175

 Score =  102 bits (256), Expect = 2e-23
 Identities = 25/172 (14%), Positives = 50/172 (29%), Gaps = 11/172 (6%)

Query: 16  FLIVLMVSSVSAGYANASQPEPTLRNQFSRWSVYVYPDLNKKLCFSLSVPVTVEPLEGVR 75
            L     ++     A       +L   +  WS+       KK+CF     V         
Sbjct: 2   SLSNSKSTTTKDTVATLPNGASSLTETYGLWSINCGIQEGKKVCFMHRQEVN-------D 54

Query: 76  HGVNFFIISLKKEENSAYVSELVMDYPLDEEEMVSLEVKGKNASGTIFKMKSYNNRAAFE 135
                  +S+    +      L + + +   + V L+V    A      +++        
Sbjct: 55  QNRVVVAMSVVLNADGVVSGNLTVPFGILVSKPVRLQVDEGKAVIET-GIRTCVPAGCIV 113

Query: 136 KRSQDTVLIEEMKRGKELVVS---AKSKRGTNTRYIYSLIGLSDSLADIRKC 184
               D   +  ++ GK L ++   A             L G S++L  +   
Sbjct: 114 PIVFDKNYVAALRAGKHLKLAMTIAAPGEPPLNDLFVQLNGFSNALNRLIAL 165


>2isb_A Fumarase, FUM-1; NP_069927.1, fumarase of FUM-1, structural
           genomics, PSI-2, protein structure initiative; HET: MSE;
           1.66A {Archaeoglobus fulgidus} (A:)
          Length = 192

 Score = 28.5 bits (64), Expect = 0.61
 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 11/72 (15%)

Query: 88  EENSAYVSELVMDYPLDEEEMVSLEVKGK-NASGTIFKMKSYNNRAAFEKRSQDTVLIEE 146
             +   V E  +  PL +++++ L+V      +G IF       R     R      +E 
Sbjct: 8   HHHHHXVXEYELRTPLVKDQILKLKVGDVVYITGEIFTA-----RDEAHAR-----ALEW 57

Query: 147 MKRGKELVVSAK 158
            + GKEL  S  
Sbjct: 58  XEEGKELPFSFD 69


>1z9l_A Vesicle-associated membrane protein-associated protein A;
           VAP-A, cytoplasmic domain, protein binding; HET: MSE;
           1.70A {Rattus norvegicus} PDB: 1z9o_A (A:)
          Length = 128

 Score = 24.5 bits (53), Expect = 8.5
 Identities = 8/37 (21%), Positives = 17/37 (45%)

Query: 95  SELVMDYPLDEEEMVSLEVKGKNASGTIFKMKSYNNR 131
           S+L    P  +    +L+++  +     FK+K+   R
Sbjct: 17  SDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPR 53


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.319    0.134    0.374 

Gapped
Lambda     K      H
   0.267   0.0585    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,309,371
Number of extensions: 54342
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 5
Length of query: 185
Length of database: 4,956,049
Length adjustment: 83
Effective length of query: 102
Effective length of database: 2,150,234
Effective search space: 219323868
Effective search space used: 219323868
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.1 bits)