HHsearch alignment of GI: 254781122 and MMDB domain: 2omk_A_
>2omk_A (A:) Hypothetical protein; succinimide, thiamin pyrophosphokinase, structural genomics, PSI-2, protein structure initiative; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=100.00 E-value=0 Score=357.77 Aligned_cols=202 Identities=22% Similarity=0.261 Sum_probs=185.6
Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHHCC-CCEEEEEHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCCEEEECCCCCC
Q ss_conf 287406999987799981688985134-9499991888999988997349997211299889974031885992056777
Q gi|254781122|r 6 TNKFIDFAILLNGDIRVTNRLLCAIES-CKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWSSIKRIFYPNDKDM 84 (222)
Q Consensus 6 ~~~~~~~~Ii~nG~~~~~~~~~~~~~~-~~iIavDgGa~~l~~~~i~Pd~iiGDfDSi~~~~~~~~~~~~~i~~~~dkD~ 84 (222)
..+|++++|++||+.+..+++.+.++. +++|||||||++|+++|++||++||||||++++.+++++.. +++|||||+
T Consensus 28 ~~~~~~~~Iv~ng~~~~~~~~~~~~~~~~~~IavDgGa~~l~~~gi~Pd~iiGDfDSi~~e~~~~~~~~--~~~~~~KD~ 105 (231)
T 2omk_A 28 EHYIPQAIILANGEYPAHELPLRLLAEAQFVVCCXXAANEYISRGHTPDVIIGDGDSLLPEYKKRFSSI--ILQISDQET 105 (231)
T ss_dssp CCCCCSEEEECSSSCCCSHHHHHHHHHCSCEEEC--CHHHHHHTTCCCSEEESCGGGSCHHHHHHHGGG--EECCCSSCC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHCCEEEEEHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHCCEE--EECCCCCCC
T ss_conf 578988899989989970889999866998999879999999879973699704110598788634606--644778786
Q ss_pred CHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEECCCEEEEECCCEEEEEEE
Q ss_conf 94899999999759975999953787812478899999998862698199994891899996795699705980899975
Q gi|254781122|r 85 ADGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLATSLKKKNINVTLTSGIEEVFILVPGKHSFDLPENSVFSIVC 164 (222)
Q Consensus 85 TD~ekAL~~~~~~~~~~i~i~gg~~G~R~DH~lani~~L~~~~~~~~~i~l~~~~~~i~~l~~g~~~~~~~~g~~~Sl~p 164 (222)
||+||||++|.++++++++++|| +|||+||+|+|+++|+++.+++.+++++++++.++++++| ..+..++|+++|++|
T Consensus 106 TD~e~Al~~~~~~~~~~i~i~Ga-~GgR~DH~lani~~l~~~~~~~~~i~l~~~~~~i~~l~~g-~~~~~~~g~~~Slip 183 (231)
T 2omk_A 106 NDQTKAVHYLQSKGIRKIAIVGA-TGKREDHTLGNISLLVEYMRSGMEVRTVTDYGTFIPVSDT-QSFASYPGQQVSIIN 183 (231)
T ss_dssp CHHHHHHHHHHHTTCCEEEEESC-SSSCHHHHHHHHHHHHHHHHTTCEEEEECSSEEEEEEESS-EEEECCTTCEEEEEE
T ss_pred CHHHHHHHHHHHCCCCEEEEECC-CCCCHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEECCC-CCCCCCCCCEEEEEE
T ss_conf 76999999987579987999658-8996748999999999999749759993476599996894-122358997874320
Q ss_pred CCCCCEEEEECEEEECCCCEECCCCCEEEEEEECCC-EEEEEECCEEEEEEC
Q ss_conf 157762573041665378785278753884998495-799995790999974
Q gi|254781122|r 165 LEDIENITITGAKYTLSHHSLSLGSSRAVSNVVTKN-LTIMLDQGLAILISR 215 (222)
Q Consensus 165 ~~~~~~vt~~Glky~L~~~~l~~~~~~~~SN~~~~~-~~I~~~~G~llvi~~ 215 (222)
+++ ++||++||||||++++|+++ |+||++.++ ++|++++|.+++|.+
T Consensus 184 l~~-~~vt~~Glky~L~~~~l~~~---~~SN~~~~~~v~I~~~~G~ll~i~~ 231 (231)
T 2omk_A 184 FGA-KGLKAEGLFYPLSDFTNWWQ---GTLNEAIADEFTIHCTGEYLVFLAY 231 (231)
T ss_dssp EEE-EEEEEESBSSCCCCCSSGGG---GTTEEBCSSEEEEEEEEEEEEEEEC
T ss_pred CCC-CEEEEECCEEECCCCCCCCC---CEEEEEECCEEEEEECCCEEEEEEC
T ss_conf 457-74997488857789877889---8778998987999985999999969