HHsearch results for GI: 254781122 and protein with PDBid: 2omk_A

>2omk_A Hypothetical protein; succinimide, thiamin pyrophosphokinase, structural genomics, PSI-2, protein structure initiative; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=100.00  E-value=0  Score=353.08  Aligned_cols=200  Identities=22%  Similarity=0.265  Sum_probs=178.8

Q ss_pred             CCCEEEEEEECCCCCCCHHHHHHHCC-CCEEEEEHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCCEEEECCCCCCC
Q ss_conf             87406999987799981688985134-94999918889999889973499972112998899740318859920567779
Q gi|254781122|r    7 NKFIDFAILLNGDIRVTNRLLCAIES-CKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWSSIKRIFYPNDKDMA   85 (222)
Q Consensus         7 ~~~~~~~Ii~nG~~~~~~~~~~~~~~-~~iIavDgGa~~l~~~~i~Pd~iiGDfDSi~~~~~~~~~~~~~i~~~~dkD~T   85 (222)
                      ..+++++|++||++|.++++.+.+++ +++||||||+++|+++|++||++||||||++++.+++++.  .+++++|||+|
T Consensus        29 ~~~p~avIianG~~p~~~~~~~~l~~~~~iIa~DgGa~~l~~~gi~Pd~iiGDfDSv~~~~~~~~~~--~~~~~~eqD~T  106 (231)
T 2omk_A           29 HYIPQAIILANGEYPAHELPLRLLAEAQFVVCCXXAANEYISRGHTPDVIIGDGDSLLPEYKKRFSS--IILQISDQETN  106 (231)
T ss_dssp             CCCCSEEEECSSSCCCSHHHHHHHHHCSCEEEC--CHHHHHHTTCCCSEEESCGGGSCHHHHHHHGG--GEECCCSSCCC
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHCCEEEEEHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHCCC--EEECCCCCCCC
T ss_conf             7688899997998997288999986499899997999999986997588980444798678853670--22337787878


Q ss_pred             HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEECCCEEEEECCCEEEEEEEC
Q ss_conf             48999999997599759999537878124788999999988626981999948918999967956997059808999751
Q gi|254781122|r   86 DGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLATSLKKKNINVTLTSGIEEVFILVPGKHSFDLPENSVFSIVCL  165 (222)
Q Consensus        86 D~ekAL~~~~~~~~~~i~i~gg~~G~R~DH~lani~~L~~~~~~~~~i~l~~~~~~i~~l~~g~~~~~~~~g~~~Sl~p~  165 (222)
                      |+||||++|.++++++++++|| +|||+||+|+|+++|++|.+.+++++++++++.++++ +|...+..++|+++|++|+
T Consensus       107 DlekAl~~~~~~g~~~I~ilGa-~GgR~DH~Lani~lL~~~~~~~~~i~~~~d~~~i~~~-~~~~~~~~~~g~~iSl~pl  184 (231)
T 2omk_A          107 DQTKAVHYLQSKGIRKIAIVGA-TGKREDHTLGNISLLVEYMRSGMEVRTVTDYGTFIPV-SDTQSFASYPGQQVSIINF  184 (231)
T ss_dssp             HHHHHHHHHHHTTCCEEEEESC-SSSCHHHHHHHHHHHHHHHHTTCEEEEECSSEEEEEE-ESSEEEECCTTCEEEEEEE
T ss_pred             HHHHHHHHHHHCCCCEEEEECC-CCCCHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEE-CCCCCCCCCCCCEEEEEEC
T ss_conf             5999999998669977999657-7895778999999999998759879994476599997-8940232589978755504


Q ss_pred             CCCCEEEEECEEEECCCCEECCCCCEEEEEEECCC-EEEEEECCEEEEEE
Q ss_conf             57762573041665378785278753884998495-79999579099997
Q gi|254781122|r  166 EDIENITITGAKYTLSHHSLSLGSSRAVSNVVTKN-LTIMLDQGLAILIS  214 (222)
Q Consensus       166 ~~~~~vt~~Glky~L~~~~l~~~~~~~~SN~~~~~-~~I~~~~G~llvi~  214 (222)
                      + +++|+++||||||+++++.+   .|+||++.++ ++|++++|.+++|.
T Consensus       185 ~-~~~vt~~Glky~L~~~~l~~---~g~SNe~~~~~v~I~~~~g~ll~i~  230 (231)
T 2omk_A          185 G-AKGLKAEGLFYPLSDFTNWW---QGTLNEAIADEFTIHCTGEYLVFLA  230 (231)
T ss_dssp             E-EEEEEEESBSSCCCCCSSGG---GGTTEEBCSSEEEEEEEEEEEEEEE
T ss_pred             C-CCEEEEECCEEECCCCCCCC---CCEEEEEECCEEEEEECCCEEEEEE
T ss_conf             4-77499718787888986788---9885899898599998599999996