HHsearch results for GI: 254781122 and protein with PDBid: 3l8m_A

>3l8m_A Probable thiamine pyrophosphokinase; thiamin diphosphate biosynthetic process, ATP binding, structural genomics, PSI-2; 2.40A {Staphylococcus saprophyticus}
Probab=100.00  E-value=0  Score=371.18  Aligned_cols=206  Identities=24%  Similarity=0.339  Sum_probs=183.4

Q ss_pred             EEEEEEECCCCCCCHHHHHHHCCCCEEEEEHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCC-CCEEEECCCCCCCHHH
Q ss_conf             069999877999816889851349499991888999988997349997211299889974031-8859920567779489
Q gi|254781122|r   10 IDFAILLNGDIRVTNRLLCAIESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWSS-IKRIFYPNDKDMADGE   88 (222)
Q Consensus        10 ~~~~Ii~nG~~~~~~~~~~~~~~~~iIavDgGa~~l~~~~i~Pd~iiGDfDSi~~~~~~~~~~-~~~i~~~~dkD~TD~e   88 (222)
                      |+++|++||+.++.+.+.+ .+.+++|||||||++|+++|+.||++||||||++++.+++++. ...++++||||+||+|
T Consensus         1 Mk~~ii~gg~~~p~~~~~~-~~~d~iIa~DgGa~~l~~~gi~Pd~ivGDfDSi~~~~~~~~~~~~~~~~~~~dkd~TD~e   79 (212)
T 3l8m_A            1 MKANLLCGNRNLPKHILVE-HKHEHWIGIDRGTLILLESGITPQFAVGDFDSISDSERNFIQQQIEINPYNSEKDDTDLA   79 (212)
T ss_dssp             CEEEEECCSSSCCTTHHHH-TTTSEEEEETHHHHHHHHTTCCCSEEESCCCCSCHHHHHHHHHHTBCCCCC---CBCHHH
T ss_pred             CEEEEEECCCCCCHHHHHH-CCCCEEEEECHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHCCCEEEECCCCCCHHHHH
T ss_conf             9899996899899899964-449889998448999998799859897178999868999986597099878878713999


Q ss_pred             HHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHH--HHCCCEEEEEECCCEEEEEECCCEEEE-ECCCEEEEEEEC
Q ss_conf             99999997599759999537878124788999999988--626981999948918999967956997-059808999751
Q gi|254781122|r   89 IAVHKALQSGARNIILVGSISGQRFDYALQHITLATSL--KKKNINVTLTSGIEEVFILVPGKHSFD-LPENSVFSIVCL  165 (222)
Q Consensus        89 kAL~~~~~~~~~~i~i~gg~~G~R~DH~lani~~L~~~--~~~~~~i~l~~~~~~i~~l~~g~~~~~-~~~g~~~Sl~p~  165 (222)
                      |||++|.++++++++++|| +|||+||+|||+++|.++  ...+.+++++++++.++++.+|.+.+. .+.++++|++|+
T Consensus        80 kAl~~~~~~~~~~I~i~G~-~GgR~DH~lanl~~L~~~~~~~~~~~i~l~~~~~~i~~l~~g~~~~~~~~~~~~~Sl~p~  158 (212)
T 3l8m_A           80 LGIDQAVKRGYRNIDVYGA-TGGRLDHFMGALQILEKPEYAKMNINIKLIDDTNEIQFIQKGQFNVTYSEQFPYISFIPV  158 (212)
T ss_dssp             HHHHHHHHTTCCEEEEESC-SSSCHHHHHHHHHHHTCHHHHTTTCEEEEECSSEEEEEECSEEECC-----CCEEEEEEC
T ss_pred             HHHHHHHHCCCCEEEEECC-CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEECCCEEEECCCCCCEEEEEEC
T ss_conf             9999998669987999857-667742799999999866652239618999599499999189438865888756898633


Q ss_pred             CCCCEEEEECEEEECCCCEECCCCCEEEEEEECCC-EEEEEECCEEEEEECCCC
Q ss_conf             57762573041665378785278753884998495-799995790999974410
Q gi|254781122|r  166 EDIENITITGAKYTLSHHSLSLGSSRAVSNVVTKN-LTIMLDQGLAILISRPYD  218 (222)
Q Consensus       166 ~~~~~vt~~Glky~L~~~~l~~~~~~~~SN~~~~~-~~I~~~~G~llvi~~~kd  218 (222)
                      +++++||++||||||++++|++++++|+||++.++ ++|++++|.+++| +|||
T Consensus       159 ~~~~~vt~~Glky~L~~~~l~~g~~~giSN~~~~~~~~I~~~~G~llvi-~s~D  211 (212)
T 3l8m_A          159 IYPTVISLKGFKYNLQNETLKLGSTLTISNELSQSCGNIEIIEGSVLMI-RSKD  211 (212)
T ss_dssp             C-CEEEESSSSCCSSEEC-------CCTTBCC---CCCEEEEESCEEEE-EECC
T ss_pred             CCCCEEECCCCEEECCCCEECCCCCCEEEEEEECCEEEEEECCCEEEEE-EECC
T ss_conf             5663698259883379954238997365238989838999778989999-9778