RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254781122|ref|YP_003065535.1| putative thiamine pyrophosphokinase [Candidatus Liberibacter asiaticus str. psy62] (222 letters) >gnl|CDD|162328 TIGR01378, thi_PPkinase, thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS. Length = 203 Score = 146 bits (371), Expect = 4e-36 Identities = 66/204 (32%), Positives = 103/204 (50%), Gaps = 6/204 (2%) Query: 15 LLNGDIRVTNRLLCAIESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWSS-- 72 L G + L E VIAADGG H +L + P+L +GDFDS+D L + Sbjct: 1 LAGGGPDLELPLRLLKEHDLVIAADGGANHLLKLGLTPDLIVGDFDSIDEEELDFYKKAG 60 Query: 73 IKRIFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLATSLKKKNIN 132 +K I +P +KD D E+A+ AL+ GA I ++G+ G R D+ L ++ L K+ I Sbjct: 61 VKIIVFPPEKDTTDLELALKYALERGADEITILGATGG-RLDHTLANLNLLLEYAKRGIK 119 Query: 133 VTLTSGIEEVFILVPGKHSFDLPEN-SVFSIVCL-EDIENITITGAKYTLSHHSLSLGSS 190 V L + +L+PGK+ + S++ D +T G KY L++ L G S Sbjct: 120 VRLIDEQNVIRLLLPGKYQIFKEPKGTYISLLPFGGDAHGLTTKGLKYPLNNAHLKFGGS 179 Query: 191 RAVSNVVTKN-LTIMLDQGLAILI 213 R +SN N T+ ++ G+ ++I Sbjct: 180 RGISNEFIGNKATVSVESGILLVI 203 >gnl|CDD|180399 PRK06101, PRK06101, short chain dehydrogenase; Provisional. Length = 240 Score = 33.3 bits (76), Expect = 0.057 Identities = 40/136 (29%), Positives = 58/136 (42%), Gaps = 40/136 (29%) Query: 46 SQLKVVPELWI---GDFD-----SVDRTLLQQWSSIKRIFYPNDKDMADGEIAVHKALQS 97 SQL +PELWI GD + VD TL+ R+F N +A+ + L Sbjct: 66 SQLPFIPELWIFNAGDCEYMDDGKVDATLMA------RVFNVNVLGVANCIEGIQPHLSC 119 Query: 98 GARNIILVGSISGQRFDYALQHI---------------TLATSLKKKNINV-TLTSGIEE 141 G R +++VGSI+ + AL TL L+ K I V T+ G Sbjct: 120 GHR-VVIVGSIASE---LALPRAEAYGASKAAVAYFARTLQLDLRPKGIEVVTVFPG--- 172 Query: 142 VFILVP--GKHSFDLP 155 F+ P K++F +P Sbjct: 173 -FVATPLTDKNTFAMP 187 >gnl|CDD|178316 PLN02714, PLN02714, thiamin pyrophosphokinase. Length = 229 Score = 32.3 bits (74), Expect = 0.11 Identities = 36/168 (21%), Positives = 71/168 (42%), Gaps = 30/168 (17%) Query: 51 VPELWIGDFDSVDRTLLQQWSSI--KRIFYPNDKDMADGEIAVHKAL----------QSG 98 P++ GD DS+ +L +S++ K + +D+D D +HK + Sbjct: 54 KPDVIKGDMDSIRPEVLDFYSNLGTKIVDESHDQDTTD----LHKCIAYIRDSTPDLDKS 109 Query: 99 ARNIILVGSISGQRFDYALQHITLATSLKKKNINVTLTSGIEEVFILVPGKH-------- 150 I+++G++ G RFD+ +I + ++ + L S + + L+P H Sbjct: 110 NLCILVLGALGG-RFDHEAGNIN--VLYRFPDLRIVLLSD-DCLIRLLPATHRHEIHIDS 165 Query: 151 SFDLPENSVFSIVCLEDIENITITGAKYTLSHHSLSLGSSRAVSNVVT 198 S + P + I + T TG ++ L + + G + SN+V Sbjct: 166 SVEGPHCGLIPIGG--PSASTTTTGLQWNLDNTEMRFGGLISTSNIVK 211 >gnl|CDD|184854 PRK14852, PRK14852, hypothetical protein; Provisional. Length = 989 Score = 29.7 bits (66), Expect = 0.65 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 3/57 (5%) Query: 94 ALQSGARNIILVGSISGQRFDYALQHITLATSLKKKNINVTLTSGIEEVFILVPGKH 150 AL++ RN++ VG+++ Q Y+ + L L K ++ S ++++ + V KH Sbjct: 113 ALRAQGRNVVEVGALATQ---YSRRWTNLMVFLAKAMFQYSMMSEVDDILVTVNPKH 166 >gnl|CDD|169194 PRK08045, PRK08045, cystathionine gamma-synthase; Provisional. Length = 386 Score = 29.1 bits (65), Expect = 0.85 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 8/65 (12%) Query: 67 LQQWSSIKRIFYPNDKDMADGEIAVHKALQSGARNIILVGSISG-----QRFDYALQHIT 121 LQ +K++++P+ + EIA + GA +L + G +RF L T Sbjct: 266 LQTQPLVKKLYHPSLPENQGHEIAARQQKGFGA---MLSFELDGDEQTLRRFLGGLSLFT 322 Query: 122 LATSL 126 LA SL Sbjct: 323 LAESL 327 >gnl|CDD|182640 PRK10676, PRK10676, DNA-binding transcriptional regulator ModE; Provisional. Length = 263 Score = 28.1 bits (63), Expect = 1.9 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Query: 95 LQSGARNIILVGSISGQRFDYALQHITLATSLKKKNINVTLTSGIEEVFILVPGK 149 LQ+ ARN G+I+ + QH+ + + K + V +T+ E L GK Sbjct: 122 LQTSARNQ-WFGTITARDHQQVQQHVDVLLADGKTRLKVAITAQSAERLGLDEGK 175 >gnl|CDD|185440 PTZ00092, PTZ00092, aconitate hydratase-like protein; Provisional. Length = 898 Score = 28.1 bits (63), Expect = 2.0 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 8/62 (12%) Query: 148 GKHSFDLPENSVFSIVCLEDIENITITGAKYTLSHHSLSLGSSRAVSNVVTKNLTIMLDQ 207 G F +PE E T G +YTL+H S+ + + + +N T N ++ML Sbjct: 405 GFKGFGIPEEKH------EKKVKFTYKGKEYTLTHGSVVIAAITSCTN--TSNPSVMLAA 456 Query: 208 GL 209 GL Sbjct: 457 GL 458 >gnl|CDD|185541 PTZ00292, PTZ00292, ribokinase; Provisional. Length = 326 Score = 27.0 bits (60), Expect = 4.1 Identities = 18/74 (24%), Positives = 26/74 (35%), Gaps = 15/74 (20%) Query: 136 TSGIEEVFILVPGKHSFDLPENSVF----SIVCLEDIENITITGAKYT-------LSHHS 184 G VF P ++ F S+ C+ ++E ITG + T S Sbjct: 171 ERGCYTVFNPAPAPKLAEVEIIKPFLKYVSLFCVNEVEAALITGMEVTDTESAFKASKEL 230 Query: 185 LSLGSSRAVSNVVT 198 LG V NV+ Sbjct: 231 QQLG----VENVII 240 >gnl|CDD|178585 PLN03008, PLN03008, Phospholipase D delta. Length = 868 Score = 27.0 bits (59), Expect = 4.4 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%) Query: 79 PNDKDMADGEIAVHKALQSGARNIILV 105 P DKDM GE+ +K+ Q G R ++LV Sbjct: 275 PRDKDMTLGELLKYKS-QEGVRVLLLV 300 >gnl|CDD|180765 PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase; Provisional. Length = 397 Score = 26.7 bits (60), Expect = 5.0 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%) Query: 74 KRIFYPNDKDMADGEIAVHKALQSGARNIILV 105 KR Y N+ DMAD E + +A ++GAR+ ++ Sbjct: 149 KRYRYANN-DMADLEAQLKEAKEAGARHKLIA 179 >gnl|CDD|162396 TIGR01510, coaD_prev_kdtB, pantetheine-phosphate adenylyltransferase, bacterial. This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis. Length = 155 Score = 26.5 bits (59), Expect = 5.2 Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 20/113 (17%) Query: 48 LKVVPELWIGDFDSVDRTLLQQWSSIKRI--------FYPNDKDMADGEIAVHKALQSGA 99 + E+ + + + L +S +R+ PN + + V A + GA Sbjct: 23 AALFDEVIVAVAKNPSKKPL--FSLEERVELIKDATKHLPNVRVDVFDGLLVDYAKELGA 80 Query: 100 RNIILVGSISGQRFDYALQHITLATSLKKKNINVTLTSGIEEVFILVPGKHSF 152 I+ G + F+Y LQ + L +N L IE VF++ +++F Sbjct: 81 -TFIVRGLRAATDFEYELQ-MAL--------MNKHLAPEIETVFLMASPEYAF 123 >gnl|CDD|178911 PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional. Length = 159 Score = 26.6 bits (60), Expect = 6.0 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 10/62 (16%) Query: 91 VHKALQSGARNIILVGSISGQRFDYALQHITLATSLKKKNINVTLTSGIEEVFILVPGKH 150 V A + GA +I+ G + F+Y Q +A +N L IE VF++ ++ Sbjct: 74 VDFAREVGA-TVIVRGLRAVSDFEYEFQ---MA------GMNRKLAPEIETVFLMPSPEY 123 Query: 151 SF 152 SF Sbjct: 124 SF 125 >gnl|CDD|185270 PRK15372, PRK15372, pathogenicity island 2 effector protein SseI; Provisional. Length = 292 Score = 26.2 bits (57), Expect = 7.3 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%) Query: 163 VCLEDIENITITGAKYTLSHHSLSLGSSRAVSNV-VTKNLTIMLD 206 V L+D+ N T+ Y+ +HH L++ + V +T NLT +D Sbjct: 80 VTLDDVGNYTVNCQGYSETHH-LTMATEPGVERTDITYNLTSDID 123 >gnl|CDD|180744 PRK06914, PRK06914, short chain dehydrogenase; Provisional. Length = 280 Score = 26.1 bits (58), Expect = 7.5 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 7/31 (22%) Query: 87 GEIAVHKAL------QSGARNIILVGSISGQ 111 G I+V +A+ Q + II + SISG+ Sbjct: 115 GAISVTQAVLPYMRKQKSGK-IINISSISGR 144 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.322 0.137 0.393 Gapped Lambda K H 0.267 0.0706 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 3,545,478 Number of extensions: 218618 Number of successful extensions: 355 Number of sequences better than 10.0: 1 Number of HSP's gapped: 351 Number of HSP's successfully gapped: 26 Length of query: 222 Length of database: 5,994,473 Length adjustment: 90 Effective length of query: 132 Effective length of database: 4,049,753 Effective search space: 534567396 Effective search space used: 534567396 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 55 (25.0 bits)