RPSBLAST alignment of GI: 254781122 and protein with PDBid: 3l8m
>3l8m_A Probable thiamine pyrophosphokinase; thiamin diphosphate biosynthetic process, ATP binding, structural genomics, PSI-2; 2.40A {Staphylococcus saprophyticus} Length = 212
Score = 137 bits (347), Expect = 1e-33
Identities = 51/206 (24%), Positives = 96/206 (46%), Gaps = 6/206 (2%)
Query: 13 AILLNGDIRVTNRLLCAIESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQ-WS 71
A LL G+ + +L + I D G + + P+ +GDFDS+ +
Sbjct: 3 ANLLCGNRNLPKHILVEHKHEHWIGIDRGTLILLESGITPQFAVGDFDSISDSERNFIQQ 62
Query: 72 SIKRIFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYALQHITL--ATSLKKK 129
I+ Y ++KD D + + +A++ G RNI + G +G R D+ + + + K
Sbjct: 63 QIEINPYNSEKDDTDLALGIDQAVKRGYRNIDVYG-ATGGRLDHFMGALQILEKPEYAKM 121
Query: 130 NINVTLTSGIEEVFILVPGKHSFDLPEN-SVFSIVCLEDIENITITGAKYTLSHHSLSLG 188
NIN+ L E+ + G+ + E S + + I++ G KY L + +L LG
Sbjct: 122 NINIKLIDDTNEIQFIQKGQFNVTYSEQFPYISFIPVIYPTVISLKGFKYNLQNETLKLG 181
Query: 189 SSRAVSNVVTKN-LTIMLDQGLAILI 213
S+ +SN ++++ I + +G ++I
Sbjct: 182 STLTISNELSQSCGNIEIIEGSVLMI 207