RPSBLAST alignment of GI: 254781122 and protein with PDBid: 3l8m

>3l8m_A Probable thiamine pyrophosphokinase; thiamin diphosphate biosynthetic process, ATP binding, structural genomics, PSI-2; 2.40A {Staphylococcus saprophyticus} Length = 212
 Score =  137 bits (347), Expect = 1e-33
 Identities = 51/206 (24%), Positives = 96/206 (46%), Gaps = 6/206 (2%)

Query: 13  AILLNGDIRVTNRLLCAIESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQ-WS 71
           A LL G+  +   +L   +    I  D G     +  + P+  +GDFDS+  +       
Sbjct: 3   ANLLCGNRNLPKHILVEHKHEHWIGIDRGTLILLESGITPQFAVGDFDSISDSERNFIQQ 62

Query: 72  SIKRIFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYALQHITL--ATSLKKK 129
            I+   Y ++KD  D  + + +A++ G RNI + G  +G R D+ +  + +       K 
Sbjct: 63  QIEINPYNSEKDDTDLALGIDQAVKRGYRNIDVYG-ATGGRLDHFMGALQILEKPEYAKM 121

Query: 130 NINVTLTSGIEEVFILVPGKHSFDLPEN-SVFSIVCLEDIENITITGAKYTLSHHSLSLG 188
           NIN+ L     E+  +  G+ +    E     S + +     I++ G KY L + +L LG
Sbjct: 122 NINIKLIDDTNEIQFIQKGQFNVTYSEQFPYISFIPVIYPTVISLKGFKYNLQNETLKLG 181

Query: 189 SSRAVSNVVTKN-LTIMLDQGLAILI 213
           S+  +SN ++++   I + +G  ++I
Sbjct: 182 STLTISNELSQSCGNIEIIEGSVLMI 207