RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781122|ref|YP_003065535.1| putative thiamine pyrophosphokinase [Candidatus Liberibacter asiaticus str. psy62] (222 letters) >3lm8_A Thiamine pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: VIB; 2.60A {Bacillus subtilis} Length = 222 Score = 142 bits (360), Expect = 5e-35 Identities = 58/215 (26%), Positives = 96/215 (44%), Gaps = 8/215 (3%) Query: 12 FAILLNGDIRVTNRLLCAIESCK-VIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQW 70 I+ G + L + I D G ++P GDFDS+ ++ Sbjct: 4 INIVAGGPKNLIPDLTGYTDEHTLWIGVDKGTVTLLDAGIIPVEAFGDFDSITEQERRRI 63 Query: 71 SS--IKRIFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLATSLKK 128 Y +KD D ++A+ AL+ I + G I+G R D+ L +I L K Sbjct: 64 EKAAPALHVYQAEKDQTDLDLALDWALEKQPDIIQIFG-ITGGRADHFLGNIQLLYKGVK 122 Query: 129 KNINVTLTSGIEEVFILVPGKHSFDLPENS--VFSIVCLEDIENITITGAKYTLSHHSLS 186 NI + L + + PG++ + EN + I EDI +T+TG KY L++ ++ Sbjct: 123 TNIKIRLIDKQNHIQMFPPGEYDIEKDENKRYISFIPFSEDIHELTLTGFKYPLNNCHIT 182 Query: 187 LGSSRAVSNVVTKN-LTIMLDQGLAILISRPYDLQ 220 LGS+ +SN + + T +G+ I+I R DL+ Sbjct: 183 LGSTLCISNELIHSRGTFSFVKGILIMI-RSTDLE 216 >3l8m_A Probable thiamine pyrophosphokinase; thiamin diphosphate biosynthetic process, ATP binding, structural genomics, PSI-2; 2.40A {Staphylococcus saprophyticus} Length = 212 Score = 137 bits (347), Expect = 1e-33 Identities = 51/206 (24%), Positives = 96/206 (46%), Gaps = 6/206 (2%) Query: 13 AILLNGDIRVTNRLLCAIESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQ-WS 71 A LL G+ + +L + I D G + + P+ +GDFDS+ + Sbjct: 3 ANLLCGNRNLPKHILVEHKHEHWIGIDRGTLILLESGITPQFAVGDFDSISDSERNFIQQ 62 Query: 72 SIKRIFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYALQHITL--ATSLKKK 129 I+ Y ++KD D + + +A++ G RNI + G +G R D+ + + + K Sbjct: 63 QIEINPYNSEKDDTDLALGIDQAVKRGYRNIDVYG-ATGGRLDHFMGALQILEKPEYAKM 121 Query: 130 NINVTLTSGIEEVFILVPGKHSFDLPEN-SVFSIVCLEDIENITITGAKYTLSHHSLSLG 188 NIN+ L E+ + G+ + E S + + I++ G KY L + +L LG Sbjct: 122 NINIKLIDDTNEIQFIQKGQFNVTYSEQFPYISFIPVIYPTVISLKGFKYNLQNETLKLG 181 Query: 189 SSRAVSNVVTKN-LTIMLDQGLAILI 213 S+ +SN ++++ I + +G ++I Sbjct: 182 STLTISNELSQSCGNIEIIEGSVLMI 207 >1ig3_A Thiamin pyrophosphokinase; beta barrel, alpha/beta/alpha sandwich, transferase; HET: VIB; 1.90A {Mus musculus} SCOP: b.82.6.1 c.100.1.1 PDB: 2f17_A* Length = 263 Score = 128 bits (322), Expect = 1e-30 Identities = 43/220 (19%), Positives = 84/220 (38%), Gaps = 24/220 (10%) Query: 14 ILLNGDIRVTNRLLCAI--ESCKVIAADGGICHASQL------KVVPELWIGDFDSVDRT 65 ++LN + + + ++ ADGG H L +PE GDFDS+ Sbjct: 42 VVLNQPL---DARFRHLWKKALLRACADGGANHLYDLTEGERESFLPEFVSGDFDSIRPE 98 Query: 66 LLQQWSS-IKRIFYPNDKDMADGEIAVHKALQ------SGARNIILVGSISGQRFDYALQ 118 + + ++ + D+D D + + I+ +G G RFD + Sbjct: 99 VKEYYTKKGCDLISTPDQDHTDFTKCLQVLQRKIEEKELQVDVIVTLG-GLGGRFDQIMA 157 Query: 119 HI-TLATSLKKKNINVTLTSGIEEVFILVPGKHSFDLPENSVFSIVCL----EDIENITI 173 + TL + + + + +++L PGKH + S L + +T Sbjct: 158 SVNTLFQATHITPVPIIIIQKDSLIYLLQPGKHRLHVDTGMEGSWCGLIPVGQPCNQVTT 217 Query: 174 TGAKYTLSHHSLSLGSSRAVSNVVTKNLTIMLDQGLAILI 213 TG K+ L++ L G+ + SN + + ++ +L Sbjct: 218 TGLKWNLTNDVLGFGTLVSTSNTYDGSGLVTVETDHPLLW 257 >3mel_A Thiamin pyrophosphokinase family protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium; HET: TPP; 2.79A {Enterococcus faecalis} Length = 222 Score = 127 bits (319), Expect = 3e-30 Identities = 43/206 (20%), Positives = 86/206 (41%), Gaps = 8/206 (3%) Query: 14 ILLNGDIRVTNRLLCAIESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQ--WS 71 ++ G+ + A + D G H + + +L +GDFDS+ R + Sbjct: 6 LVAGGNPSDWPTIEPATYDY-FVGIDRGCLHLLEADLPLQLAVGDFDSLSREEYHFVQET 64 Query: 72 SIKRIFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLATSLKKKNI 131 + I P +KD D ++A+ +ALQ + + + +G R D+ L ++ L + + + Sbjct: 65 TETLIQAPAEKDDTDTQLALQEALQRFPQAEMTIIGATGGRIDHLLANLWLPFEPRFQGV 124 Query: 132 --NVTLTSGIEEVFILVPGKHSF-DLPENSVFSIVCLEDIENITITGAKYTLSHHSLSLG 188 + L + PG + P+ + CL +EN+T+ +KY L++ + Sbjct: 125 LRQIRLCDRQNSIQYYAPGSYIVPKEPDKEYLAYCCLTPVENLTLRRSKYLLTNQDVPYP 184 Query: 189 SSRAVSNVVTKN-LTIMLDQGLAILI 213 + SN + D G+ +I Sbjct: 185 -TSYASNEFIEEAAAFSFDAGMIAVI 209 >3cq9_A Uncharacterized protein LP_1622; Q88WK7_lacpl, transferase, thiamine pyrophosphokinase, NESG, LPR114, structural genomics, PSI-2; 2.20A {Lactobacillus plantarum WCFS1} Length = 227 Score = 125 bits (314), Expect = 1e-29 Identities = 40/207 (19%), Positives = 77/207 (37%), Gaps = 7/207 (3%) Query: 12 FAILLNGDIRVTNRLLCAIESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQ--Q 69 +L+ G L I + AD G + + P + +GDFDS+D LQ + Sbjct: 5 VNLLVGGPTANYPADLTTIPG-PWVGADRGALRLVKRGIQPVMVVGDFDSIDAAELQTVK 63 Query: 70 WSSIKRIFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLATS--LK 127 + + I D+D D ++A+ + + + + +G R D+ L ++ L + Sbjct: 64 DALVGAIVVKPDQDHTDTQLAIKSIFEQLQPDEVHLYGATGGRLDHLLANMWLVLDPVFR 123 Query: 128 KKNINVTLTSGIEEVFILVPGKHSFDLPENSVFSIVCLEDIENITITGAKYTLSHHSLSL 187 + + L V +PG + + + ++T+ KY L + Sbjct: 124 QWAPQIKLIDKQNSVRFFLPGDYQITKEADKRYLAFVPLMPMHLTLPDEKYQLDAAYNA- 182 Query: 188 GSSRAVSNVVTKN-LTIMLDQGLAILI 213 SN + N D G+ +I Sbjct: 183 YPISWASNEFSGNTGHFSFDAGVLAVI 209 >3k94_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative; 2.10A {Geobacillus thermodenitrificans ng80-2} Length = 223 Score = 123 bits (309), Expect = 4e-29 Identities = 49/206 (23%), Positives = 86/206 (41%), Gaps = 9/206 (4%) Query: 14 ILLNGDIRVTNRLLCAIESCK-VIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWSS 72 I+ G + L + D G + P GDFDS+ + + Sbjct: 5 IVGGGPRELLPDLRFYDGEDVCWVGVDRGTMTLLEAGFRPVRAFGDFDSLPAEDVVKLQQ 64 Query: 73 --IKRIFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLATSLKKKN 130 +P +KD D EIA+ A++ AR I L G+ G R D+ ++ L + Sbjct: 65 AFPDLDVWPAEKDKTDMEIALDWAVEQTARCIRLFGATGG-RLDHLFGNVELLLKYADRP 123 Query: 131 INVTLTSGIEEVFILVPGKHSF--DLPENSVFSIVCLEDIENITITGAKYTLSHHSLSLG 188 I + + + +PG ++ D V I E + T+TG KY L++ +S G Sbjct: 124 IEIVDRQ--NVLTVHLPGTYTVMYDARYCYVSYIPVSETVAEFTLTGFKYPLTNCHISRG 181 Query: 189 SSRAVSNVVTKN-LTIMLDQGLAILI 213 S+ +SN + ++ T +G+ ++I Sbjct: 182 STLCISNELIQSSGTFSFSEGILMMI 207 >3ihk_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, SMR83; HET: TPP; 3.00A {Streptococcus mutans} Length = 218 Score = 120 bits (302), Expect = 2e-28 Identities = 45/206 (21%), Positives = 77/206 (37%), Gaps = 11/206 (5%) Query: 13 AILLNGDIRVTNRLLCAIESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWS- 71 A+ GD+ R + + D G + ++ +L IGDFDSV +Q Sbjct: 5 ALFSGGDLTYFTR-----DFDYFVGIDKGSSFLLKNQLPLDLAIGDFDSVSAEEFKQIKA 59 Query: 72 -SIKRIFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLA--TSLKK 128 + K + P +K+ D E+A+ R I+V G R D+ L +I L L Sbjct: 60 KAKKLVMAPAEKNDTDTELALKTIFDCFGRVEIIVFGAFGGRIDHMLSNIFLPSDPDLAP 119 Query: 129 KNINVTLTSGIEEVFILVPGKHSFDLPENSVFSIVCLEDIENITITGAKYTLSHHSLSLG 188 L V G+H + + V+ + +++I AKY L+ + Sbjct: 120 FMRCFKLRDEQNLVEFFPAGQHQIEQATDMVYISFMAANGAHLSIQDAKYELTEENYF-Q 178 Query: 189 SSRAVSNVVTKN-LTIMLDQGLAILI 213 SN + + G ++I Sbjct: 179 KKIYSSNEFKDKPICFSVASGYVVVI 204 >2omk_A Hypothetical protein; succinimide, thiamin pyrophosphokinase, structural genomics, PSI-2, protein structure initiative; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Length = 231 Score = 113 bits (284), Expect = 3e-26 Identities = 49/212 (23%), Positives = 81/212 (38%), Gaps = 11/212 (5%) Query: 6 TNKFIDFA-ILLNGDIRVTNRLLCAIESCK-VIAADGGICHASQLKVVPELWIGDFDSVD 63 +I A IL NG+ L + + V+ P++ IGD DS+ Sbjct: 27 NEHYIPQAIILANGEYPAHELPLRLLAEAQFVVCCXXAANEYISRGHTPDVIIGDGDSLL 86 Query: 64 RTLLQQWSSIKRIFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLA 123 +++SSI I +D++ D AVH G R I +VG+ G+R D+ L +I+L Sbjct: 87 PEYKKRFSSI--ILQISDQETNDQTKAVHYLQSKGIRKIAIVGAT-GKREDHTLGNISLL 143 Query: 124 TSLKKKNINVTLTSGIEEVFILVPGKHSFDLPENSVFSIVCLEDIENITITGAKYTLSHH 183 + + V + FI V SF SI+ + + G Y LS Sbjct: 144 VEYMRSGMEVRTVT-DYGTFIPVSDTQSFASYPGQQVSIINFGA-KGLKAEGLFYPLSDF 201 Query: 184 SLSLGSSRAVSNVVTKN-LTIMLDQGLAILIS 214 + + N + TI + ++ Sbjct: 202 TN---WWQGTLNEAIADEFTIHCTGEYLVFLA 230 >2g9z_A Thiamine pyrophosphokinase; thiamin-PNP, TPK, thiamin pyrophosphokinase, structural genomics, profun, bacterial targets at IGS-CNRS, france; HET: VNP; 1.96A {Candida albicans} PDB: 2hh9_A* Length = 348 Score = 101 bits (253), Expect = 1e-22 Identities = 38/280 (13%), Positives = 83/280 (29%), Gaps = 75/280 (26%) Query: 14 ILLNGDIRVTNRLLCAIESCKV-IAADGG----------------ICHASQLKVVPELWI 56 ++LN I + L + C++ + ADGG + + +P+ + Sbjct: 67 LILNQKITIDLISL--WKKCEIIVCADGGANSLYEYFNDNNXXXXXENLQRSDYIPDYIV 124 Query: 57 GDFDSVDRTLLQQWSS-IKRIFYPNDKDMADGEIAVH----------------------- 92 GDFDS+ + + S +I + + D ++H Sbjct: 125 GDFDSISPDVKTYYESHGSKIIRQSSQYYNDFTKSIHCIQLHYQLNHTKENWFESIDEVD 184 Query: 93 -------------KALQSGARNIILVGSISGQRFDYALQHITLATSLKKK--NINVTLTS 137 + I ++ G RFD +Q I + + + V + Sbjct: 185 GLAKLWNGLNNSSDVVVDIDITIYVLN-AIGGRFDQTVQSINQLYIMNEDYPKVTVFFIT 243 Query: 138 GIEEVFILVPGKH------------SFDLPENSVFSIVCLEDIE--NITITGAKYTLSHH 183 + +F+L G + ++ L + + G KY + + Sbjct: 244 TNDIIFLLKKGVNYISYKNRLMFHKDNGSSPTPTCGLLPLSNKTPIILNSYGLKYDMRNW 303 Query: 184 SLSLGSSRAVSNVVTKN--LTIMLDQGLAILISRPYDLQR 221 + + SN ++ + + + I L Sbjct: 304 KTEMLGQVSSSNRISGETGFIVECSDDIVMNIEIDVQLDG 343 >1ig0_A Thiamin pyrophosphokinase; protein-substrate complex, compound active site, alpha-beta- alpha, beta sandwich, transferase; HET: VIB; 1.80A {Saccharomyces cerevisiae} SCOP: b.82.6.1 c.100.1.1 Length = 319 Score = 75.1 bits (184), Expect = 1e-14 Identities = 35/253 (13%), Positives = 73/253 (28%), Gaps = 67/253 (26%) Query: 14 ILLNGDIRVTNRLLCAI-ESCKV-IAADGG---------ICHASQLKVVPELWIGDFDSV 62 ++LN I + L I + + + ADG ++K +P IGD DS+ Sbjct: 42 LILNQKIDIPRPLFYKIWKLHDLKVCADGAANRLYDYLDDDETLRIKYLPNYIIGDLDSL 101 Query: 63 DRTLLQQWSSIK-RIFYPNDKDMADGEIAV------------------------------ 91 + + + K I + D V Sbjct: 102 SEKVYKYYRKNKVTIIKQTTQYSTDFTKCVNLISLHFNSPEFRSLISNKDNLQSNHGIEL 161 Query: 92 --------------HKALQSGARNIILVGSISGQRFDYALQHITLATSLKKK--NINVTL 135 + +++ +G I G RFD + IT +L + + Sbjct: 162 EKGIHTLYNTMTESLVFSKVTPISLLALGGIGG-RFDQTVHSITQLYTLSENASYFKLCY 220 Query: 136 TSGIEEVFILVPGKH------SFDLPENSVFSIVCL-EDIENITITGAKYTLSH-HSLSL 187 + + +F++ F ++ + E G K+ + + + + Sbjct: 221 MTPTDLIFLIKKNGTLIEYDPQFRNTCIGNCGLLPIGEATLVKETRGLKWDVKNWPTSVV 280 Query: 188 GSSRAVSNVVTKN 200 + SN + Sbjct: 281 TGRVSSSNRFVGD 293 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 45.3 bits (107), Expect = 1e-05 Identities = 44/255 (17%), Positives = 77/255 (30%), Gaps = 112/255 (43%) Query: 44 HASQLKVVPEL--WIG-----DF-----------DSVD----------------RTLLQQ 69 S K + + +IG + DS++ + +Q Sbjct: 293 FVSVRKAI-TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ- 350 Query: 70 WSSIKRI-----FYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLAT 124 + P K V +L +GA+N+++ G +L L Sbjct: 351 ----DYVNKTNSHLPAGK-------QVEISLVNGAKNLVVSGPPQ------SLYG--LNL 391 Query: 125 SLKKKNINVTLTSGIEEVFILVPGK-------HSFDLPENSVF---------SIVCLEDI 168 +L+K SG+++ I P + F LP S F ++ +D+ Sbjct: 392 TLRK----AKAPSGLDQSRI--PFSERKLKFSNRF-LPVASPFHSHLLVPASDLI-NKDL 443 Query: 169 --ENITITGAK-----Y-TLSHHSL-SLGSS---RAVSNVVTKNL----------TIMLD 206 N++ Y T L L S R V ++ + T +LD Sbjct: 444 VKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILD 503 Query: 207 ------QGLAILISR 215 GL +L R Sbjct: 504 FGPGGASGLGVLTHR 518 Score = 29.5 bits (66), Expect = 0.55 Identities = 15/74 (20%), Positives = 33/74 (44%), Gaps = 11/74 (14%) Query: 152 FDLPENSVFSIVCLEDIENITITGAKYTLSHHSL-------SLGSSRAVSNVVTKNLTIM 204 F P ++ ED+++ + A T + HSL SL ++ ++V ++ Sbjct: 1731 FTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLV----EVV 1786 Query: 205 LDQGLAILISRPYD 218 +G+ + ++ P D Sbjct: 1787 FYRGMTMQVAVPRD 1800 Score = 26.8 bits (59), Expect = 4.4 Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 14/46 (30%) Query: 123 ATSLKKKNINVTLTSG-IEEVFILVPGKHSFDLPENSVFSIVCLED 167 A S + +TL+ G +E H +P S F L++ Sbjct: 3 AYSTRP----LTLSHGSLE---------HVLLVPTASFFIASQLQE 35 Score = 26.1 bits (57), Expect = 7.0 Identities = 39/271 (14%), Positives = 75/271 (27%), Gaps = 110/271 (40%) Query: 2 SLSHTNKFIDFAILLNGDIRVTNRLLCAIESCKVIAADGGICHASQLK------------ 49 +LSH + ++ +L V ASQL+ Sbjct: 10 TLSHGS--LEHVLL------VPTASFF---------------IASQLQEQFNKILPEPTE 46 Query: 50 ---------VVPELW---------------IGDFDSVDRTLLQQWSSIKRIFYPNDKDMA 85 EL +G FD V L + + + + Sbjct: 47 GFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE---FENCY------LE 97 Query: 86 DGEIAVHKALQS---------GARNIILV-----GSISGQRFDYALQHITLATSLKKKNI 131 +I H ++ ++ + FD L ++ + N Sbjct: 98 GNDI--HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA-LFRAVGEGNA 154 Query: 132 NV-TLTSG---IEEVFILVPGKHSFDLPENSVFSI--VCLEDIENITITGAKYTLSHHSL 185 + + G ++ F +L + ++ V + D+ I + TLS L Sbjct: 155 QLVAIFGGQGNTDDYFE--------ELRD--LYQTYHVLVGDL--IKFSAE--TLSE--L 198 Query: 186 SLGSSRAVSNVVTKNLTIMLDQGLAILISRP 216 + A V T+ L I+ + L + P Sbjct: 199 IRTTLDA-EKVFTQGLNIL--EWLENPSNTP 226 >1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 Score = 28.5 bits (63), Expect = 1.4 Identities = 8/71 (11%), Positives = 21/71 (29%), Gaps = 6/71 (8%) Query: 139 IEEVFILVPGKHSFDLPENSVFSIVCLEDI--ENITITGAKYTLSH----HSLSLGSSRA 192 F + + ++++ E+ T S + L+ G Sbjct: 448 WSNFRAEGSSSALFRINPIQNLDNISIKNVSIESFEPLSINTTESWMPVWYDLNNGKQIT 507 Query: 193 VSNVVTKNLTI 203 V++ + T+ Sbjct: 508 VTDFSIEGFTV 518 >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 28.4 bits (62), Expect = 1.5 Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 16/55 (29%) Query: 42 ICHASQLKVVPEL---W-------IGDFDSVDRTLLQQWSSIKRIFYPNDKDMAD 86 I A +L PE W + + D+ + + Q+W + KD+ + Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAK------KDLEE 122 >3nnp_A Xometc, cystathionine gamma-lyase-like protein; native, Cys-Met metabolism PLP-dependent ENZY family, pyridoxal-phosphate (PLP; HET: PLP; 2.29A {Xanthomonas oryzae PV} PDB: 3e6g_A* Length = 400 Score = 28.3 bits (63), Expect = 1.6 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 6/64 (9%) Query: 67 LQQWSSIKRIFYPNDKDMADGEIAVHKALQSGARNII---LVGSI-SGQRFDYALQHITL 122 L+ +I+++ YP + K SG I+ L G + +RF + TL Sbjct: 282 LETHPAIEKVIYPGLASHPQHVL--AKRQMSGFGGIVSIVLKGGFDAAKRFCEKTELFTL 339 Query: 123 ATSL 126 A SL Sbjct: 340 AESL 343 >2uz0_A Esterase, tributyrin esterase; alpha/beta hydrolase, hydrolase, A virulence factor for LUNG infection; HET: MSE; 1.7A {Streptococcus pneumoniae} Length = 263 Score = 28.2 bits (61), Expect = 1.6 Identities = 11/130 (8%), Positives = 28/130 (21%), Gaps = 8/130 (6%) Query: 24 NRLLCAIESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWSSIKRIFYPNDKD 83 + + + F + S + Sbjct: 118 KTFIAGLSMGGYGCFKLALTTNRFSHAASFSGALSFQNFSPESQNLGSPAYWRGVFGEIR 177 Query: 84 MADGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLATSLKKKNINVTLTSGIEEVF 143 ++L + + + G++ + +LKK +VT + Sbjct: 178 DWTTSPYSLESLAKKSDKKTKLWAWCGEQDFLYEANNLAVKNLKKLGFDVT--------Y 229 Query: 144 ILVPGKHSFD 153 G H + Sbjct: 230 SHSAGTHEWY 239 >2kco_A 30S ribosomal protein S8E; ribosomal protein of unknown function, ribonucleoprotein, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus P2} Length = 133 Score = 28.1 bits (63), Expect = 1.9 Identities = 7/22 (31%), Positives = 13/22 (59%) Query: 195 NVVTKNLTIMLDQGLAILISRP 216 ++ + I + GLA++ SRP Sbjct: 94 GIIIRGAKIRTEAGLAVVTSRP 115 >2dg5_A Gamma-glutamyltranspeptidase; gamma-glutamyltransferase, GGT, gamma-GT, glutathione; HET: GLU; 1.60A {Escherichia coli K12} SCOP: d.153.1.6 PDB: 2dbu_A 2dbw_A* 2dbx_A* 2e0x_A 2e0y_A 2z8i_A* 2z8j_A* 2z8k_A* Length = 366 Score = 27.8 bits (61), Expect = 2.1 Identities = 11/63 (17%), Positives = 20/63 (31%) Query: 41 GICHASQLKVVPELWIGDFDSVDRTLLQQWSSIKRIFYPNDKDMADGEIAVHKALQSGAR 100 A +V + D + +L + K IF+ + + G+ V L Sbjct: 149 AFKLARDGFIVNDALADDLKTYGSEVLPNHENSKAIFWKEGEPLKKGDTLVQANLAKSLE 208 Query: 101 NII 103 I Sbjct: 209 MIA 211 >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} Length = 247 Score = 27.6 bits (62), Expect = 2.2 Identities = 18/114 (15%), Positives = 38/114 (33%), Gaps = 21/114 (18%) Query: 34 KVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWSSIKRIFYPNDKDMADGEIAVHK 93 ++ A + I +V I + + R +W + + N + + Sbjct: 75 EIKAENLAIDI-----LVNNAGITRDNLMMRMSEDEW---QSVINTNLSSIFRMSKECVR 126 Query: 94 A-LQSGARNIILVGSISGQR-----FDY-----ALQHIT--LATSLKKKNINVT 134 ++ II +GS+ G +Y + + LA + +NI V Sbjct: 127 GMMKKRWGRIISIGSVVGSAGNPGQTNYCAAKAGVIGFSKSLAYEVASRNITVN 180 >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma- family, lyase; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* Length = 445 Score = 27.7 bits (61), Expect = 2.2 Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 6/64 (9%) Query: 67 LQQWSSIKRIFYPNDKDMADGEIAVHKALQSGARNIILV----GSISGQRFDYALQHITL 122 L+ ++ ++YP + + IA K +G + ++ +F AL+ + Sbjct: 328 LEAHPKVRHVYYPGLQSHPEHHIA--KKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYI 385 Query: 123 ATSL 126 A S Sbjct: 386 APSF 389 >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genomics, SGC stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B Length = 403 Score = 27.7 bits (61), Expect = 2.3 Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 2/63 (3%) Query: 66 LLQQWSSIKRIFYPNDKDMADGEIAVHKALQSGARN-IILVGSIS-GQRFDYALQHITLA 123 L+ ++++ YP E+ + + G++ + F L+ TLA Sbjct: 280 FLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLKNLKLFTLA 339 Query: 124 TSL 126 SL Sbjct: 340 ESL 342 >2kcp_A 30S ribosomal protein S8E; RPS8E, beta, NESG, ribonucleoprotein, structural genomics, PSI-2; NMR {Methanothermobacter thermautotrophicusstr} PDB: 2kcy_A Length = 98 Score = 27.6 bits (62), Expect = 2.5 Identities = 6/22 (27%), Positives = 12/22 (54%) Query: 195 NVVTKNLTIMLDQGLAILISRP 216 N++T+ + + G + SRP Sbjct: 56 NIITRGAVVETNLGNVRVTSRP 77 >2e0w_A Gamma-glutamyltranspeptidase; NTN hydrolase, precursor, gamma-GTP, post-translational processing, maturation, transferase; 2.55A {Escherichia coli K12} SCOP: d.153.1.6 Length = 556 Score = 27.5 bits (60), Expect = 2.5 Identities = 10/54 (18%), Positives = 19/54 (35%) Query: 50 VVPELWIGDFDSVDRTLLQQWSSIKRIFYPNDKDMADGEIAVHKALQSGARNII 103 +V + D + +L + K IF+ + + G+ V L I Sbjct: 158 IVNDALADDLKTYGSEVLPNHENSKAIFWKEGEPLKKGDTLVQANLAKSLEMIA 211 >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase, propargylglycine; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* Length = 404 Score = 27.6 bits (61), Expect = 2.6 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Query: 66 LLQQWSSIKRIFYPNDKDMADGEIAVHKALQSGAR-NIILVGSIS-GQRFDYALQHITLA 123 L+ ++++++YP +D +IA + G+ IL ++ L+ ITLA Sbjct: 277 YLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEGAKKLLDNLKLITLA 336 Query: 124 TSL 126 SL Sbjct: 337 VSL 339 >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3frj_A* 3hfg_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3ch6_A* 2irw_A* 2ilt_A* 2bel_A* 1y5m_A* 1y5r_A* 1xse_A* 3g49_A* 3dwf_A* Length = 286 Score = 26.2 bits (57), Expect = 5.3 Identities = 13/91 (14%), Positives = 30/91 (32%), Gaps = 19/91 (20%) Query: 70 WSSIKRIFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFD----------YALQH 119 +++ N +A L+ +I++V S++G+ +AL Sbjct: 127 IHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDG 186 Query: 120 IT--LATSLKKKNINVTLTSGIEEVFILVPG 148 + +NV+ + + V G Sbjct: 187 FFSSIRKEYSVSRVNVS-------ITLCVLG 210 >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} Length = 250 Score = 26.4 bits (59), Expect = 5.4 Identities = 25/144 (17%), Positives = 45/144 (31%), Gaps = 22/144 (15%) Query: 3 LSHTNKFIDFAILLNGDIRVTNRLLCAIESCKVIAADGGICHASQLKVVPELWIGDFDSV 62 + +NK + I+L DI + I+ + G + +V + S+ Sbjct: 51 IMRSNKHVQEPIVLPLDITDCTKADTEIK--DIHQKYGAVDI-----LVNAAAMFMDGSL 103 Query: 63 DRTLLQQWSSIKRIFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQR-----FDY-- 115 + + I I + + K ++G I V S + + Y Sbjct: 104 SEPV-DNFRKIMEINVIAQYGILKTVTEIMKVQKNGY--IFNVASRAAKYGFADGGIYGS 160 Query: 116 ---ALQHIT--LATSLKKKNINVT 134 AL + L L I VT Sbjct: 161 TKFALLGLAESLYRELAPLGIRVT 184 >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* Length = 398 Score = 26.2 bits (57), Expect = 5.8 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 2/62 (3%) Query: 67 LQQWSSIKRIFYPNDKDMADGEIAVHKALQSGAR-NIILVGSI-SGQRFDYALQHITLAT 124 L+ SI R++YP E+ + G + + G + +G+R +++ LA Sbjct: 279 LEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAV 338 Query: 125 SL 126 SL Sbjct: 339 SL 340 >1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF inducing substance; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 Score = 25.7 bits (56), Expect = 7.6 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Query: 158 SVFSIVCLEDIENITITGAKYTLSHHSLSLGSSR-----AVSNVVTKNLTIMLDQGLAIL 212 S+ SI + + N+ I G T S + + + + R +VS V TI +L Sbjct: 198 SIGSIATGKHVSNVVIKGNTVTRSMYGVRIKAQRTATSASVSGVTYDANTISGIAKYGVL 257 Query: 213 ISRPY 217 IS+ Y Sbjct: 258 ISQSY 262 >2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB: 2p2d_A 2p2n_A 2ocd_A Length = 358 Score = 25.9 bits (56), Expect = 7.8 Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 17/70 (24%) Query: 120 ITLATSLKKKNINVTLTSG-----------------IEEVFILVPGKHSFDLPENSVFSI 162 + + ++KK+I V T G ++ L+P H ++P+ ++ Sbjct: 15 VPRGSHMQKKSIYVAYTGGTIGMQRSEQGYIPVSGHLQRQLALMPEFHRPEMPDFTIHEY 74 Query: 163 VCLEDIENIT 172 L D ++T Sbjct: 75 TPLMDSSDMT 84 >3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens} Length = 253 Score = 25.3 bits (55), Expect = 9.8 Identities = 11/55 (20%), Positives = 25/55 (45%) Query: 1 MSLSHTNKFIDFAILLNGDIRVTNRLLCAIESCKVIAADGGICHASQLKVVPELW 55 + +++D AI N + L+ + + +V+ G I +V+P+L+ Sbjct: 181 CNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLY 235 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.322 0.137 0.393 Gapped Lambda K H 0.267 0.0813 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,876,870 Number of extensions: 83782 Number of successful extensions: 261 Number of sequences better than 10.0: 1 Number of HSP's gapped: 238 Number of HSP's successfully gapped: 39 Length of query: 222 Length of database: 5,693,230 Length adjustment: 89 Effective length of query: 133 Effective length of database: 3,535,514 Effective search space: 470223362 Effective search space used: 470223362 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 55 (24.8 bits)