RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781122|ref|YP_003065535.1| putative thiamine
pyrophosphokinase [Candidatus Liberibacter asiaticus str. psy62]
         (222 letters)



>3lm8_A Thiamine pyrophosphokinase; structural genomics, PSI-2, protein
           structure initiative, northeast structural genomics
           consortium, NESG; HET: VIB; 2.60A {Bacillus subtilis}
          Length = 222

 Score =  142 bits (360), Expect = 5e-35
 Identities = 58/215 (26%), Positives = 96/215 (44%), Gaps = 8/215 (3%)

Query: 12  FAILLNGDIRVTNRLLCAIESCK-VIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQW 70
             I+  G   +   L    +     I  D G        ++P    GDFDS+     ++ 
Sbjct: 4   INIVAGGPKNLIPDLTGYTDEHTLWIGVDKGTVTLLDAGIIPVEAFGDFDSITEQERRRI 63

Query: 71  SS--IKRIFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLATSLKK 128
                    Y  +KD  D ++A+  AL+     I + G I+G R D+ L +I L     K
Sbjct: 64  EKAAPALHVYQAEKDQTDLDLALDWALEKQPDIIQIFG-ITGGRADHFLGNIQLLYKGVK 122

Query: 129 KNINVTLTSGIEEVFILVPGKHSFDLPENS--VFSIVCLEDIENITITGAKYTLSHHSLS 186
            NI + L      + +  PG++  +  EN   +  I   EDI  +T+TG KY L++  ++
Sbjct: 123 TNIKIRLIDKQNHIQMFPPGEYDIEKDENKRYISFIPFSEDIHELTLTGFKYPLNNCHIT 182

Query: 187 LGSSRAVSNVVTKN-LTIMLDQGLAILISRPYDLQ 220
           LGS+  +SN +  +  T    +G+ I+I R  DL+
Sbjct: 183 LGSTLCISNELIHSRGTFSFVKGILIMI-RSTDLE 216


>3l8m_A Probable thiamine pyrophosphokinase; thiamin diphosphate
           biosynthetic process, ATP binding, structural genomics,
           PSI-2; 2.40A {Staphylococcus saprophyticus}
          Length = 212

 Score =  137 bits (347), Expect = 1e-33
 Identities = 51/206 (24%), Positives = 96/206 (46%), Gaps = 6/206 (2%)

Query: 13  AILLNGDIRVTNRLLCAIESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQ-WS 71
           A LL G+  +   +L   +    I  D G     +  + P+  +GDFDS+  +       
Sbjct: 3   ANLLCGNRNLPKHILVEHKHEHWIGIDRGTLILLESGITPQFAVGDFDSISDSERNFIQQ 62

Query: 72  SIKRIFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYALQHITL--ATSLKKK 129
            I+   Y ++KD  D  + + +A++ G RNI + G  +G R D+ +  + +       K 
Sbjct: 63  QIEINPYNSEKDDTDLALGIDQAVKRGYRNIDVYG-ATGGRLDHFMGALQILEKPEYAKM 121

Query: 130 NINVTLTSGIEEVFILVPGKHSFDLPEN-SVFSIVCLEDIENITITGAKYTLSHHSLSLG 188
           NIN+ L     E+  +  G+ +    E     S + +     I++ G KY L + +L LG
Sbjct: 122 NINIKLIDDTNEIQFIQKGQFNVTYSEQFPYISFIPVIYPTVISLKGFKYNLQNETLKLG 181

Query: 189 SSRAVSNVVTKN-LTIMLDQGLAILI 213
           S+  +SN ++++   I + +G  ++I
Sbjct: 182 STLTISNELSQSCGNIEIIEGSVLMI 207


>1ig3_A Thiamin pyrophosphokinase; beta barrel, alpha/beta/alpha sandwich,
           transferase; HET: VIB; 1.90A {Mus musculus} SCOP:
           b.82.6.1 c.100.1.1 PDB: 2f17_A*
          Length = 263

 Score =  128 bits (322), Expect = 1e-30
 Identities = 43/220 (19%), Positives = 84/220 (38%), Gaps = 24/220 (10%)

Query: 14  ILLNGDIRVTNRLLCAI--ESCKVIAADGGICHASQL------KVVPELWIGDFDSVDRT 65
           ++LN  +   +     +  ++     ADGG  H   L        +PE   GDFDS+   
Sbjct: 42  VVLNQPL---DARFRHLWKKALLRACADGGANHLYDLTEGERESFLPEFVSGDFDSIRPE 98

Query: 66  LLQQWSS-IKRIFYPNDKDMADGEIAVHKALQ------SGARNIILVGSISGQRFDYALQ 118
           + + ++     +    D+D  D    +    +           I+ +G   G RFD  + 
Sbjct: 99  VKEYYTKKGCDLISTPDQDHTDFTKCLQVLQRKIEEKELQVDVIVTLG-GLGGRFDQIMA 157

Query: 119 HI-TLATSLKKKNINVTLTSGIEEVFILVPGKHSFDLPENSVFSIVCL----EDIENITI 173
            + TL  +     + + +      +++L PGKH   +      S   L    +    +T 
Sbjct: 158 SVNTLFQATHITPVPIIIIQKDSLIYLLQPGKHRLHVDTGMEGSWCGLIPVGQPCNQVTT 217

Query: 174 TGAKYTLSHHSLSLGSSRAVSNVVTKNLTIMLDQGLAILI 213
           TG K+ L++  L  G+  + SN    +  + ++    +L 
Sbjct: 218 TGLKWNLTNDVLGFGTLVSTSNTYDGSGLVTVETDHPLLW 257


>3mel_A Thiamin pyrophosphokinase family protein; structural genomics,
           PSI-2, protein structure initiative, no structural
           genomics consortium; HET: TPP; 2.79A {Enterococcus
           faecalis}
          Length = 222

 Score =  127 bits (319), Expect = 3e-30
 Identities = 43/206 (20%), Positives = 86/206 (41%), Gaps = 8/206 (3%)

Query: 14  ILLNGDIRVTNRLLCAIESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQ--WS 71
           ++  G+      +  A      +  D G  H  +  +  +L +GDFDS+ R        +
Sbjct: 6   LVAGGNPSDWPTIEPATYDY-FVGIDRGCLHLLEADLPLQLAVGDFDSLSREEYHFVQET 64

Query: 72  SIKRIFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLATSLKKKNI 131
           +   I  P +KD  D ++A+ +ALQ   +  + +   +G R D+ L ++ L    + + +
Sbjct: 65  TETLIQAPAEKDDTDTQLALQEALQRFPQAEMTIIGATGGRIDHLLANLWLPFEPRFQGV 124

Query: 132 --NVTLTSGIEEVFILVPGKHSF-DLPENSVFSIVCLEDIENITITGAKYTLSHHSLSLG 188
              + L      +    PG +     P+    +  CL  +EN+T+  +KY L++  +   
Sbjct: 125 LRQIRLCDRQNSIQYYAPGSYIVPKEPDKEYLAYCCLTPVENLTLRRSKYLLTNQDVPYP 184

Query: 189 SSRAVSNVVTKN-LTIMLDQGLAILI 213
            +   SN   +       D G+  +I
Sbjct: 185 -TSYASNEFIEEAAAFSFDAGMIAVI 209


>3cq9_A Uncharacterized protein LP_1622; Q88WK7_lacpl, transferase,
           thiamine pyrophosphokinase, NESG, LPR114, structural
           genomics, PSI-2; 2.20A {Lactobacillus plantarum WCFS1}
          Length = 227

 Score =  125 bits (314), Expect = 1e-29
 Identities = 40/207 (19%), Positives = 77/207 (37%), Gaps = 7/207 (3%)

Query: 12  FAILLNGDIRVTNRLLCAIESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQ--Q 69
             +L+ G        L  I     + AD G     +  + P + +GDFDS+D   LQ  +
Sbjct: 5   VNLLVGGPTANYPADLTTIPG-PWVGADRGALRLVKRGIQPVMVVGDFDSIDAAELQTVK 63

Query: 70  WSSIKRIFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLATS--LK 127
            + +  I    D+D  D ++A+    +    + + +   +G R D+ L ++ L      +
Sbjct: 64  DALVGAIVVKPDQDHTDTQLAIKSIFEQLQPDEVHLYGATGGRLDHLLANMWLVLDPVFR 123

Query: 128 KKNINVTLTSGIEEVFILVPGKHSFDLPENSVFSIVCLEDIENITITGAKYTLSHHSLSL 187
           +    + L      V   +PG +      +  +         ++T+   KY L     + 
Sbjct: 124 QWAPQIKLIDKQNSVRFFLPGDYQITKEADKRYLAFVPLMPMHLTLPDEKYQLDAAYNA- 182

Query: 188 GSSRAVSNVVTKN-LTIMLDQGLAILI 213
                 SN  + N      D G+  +I
Sbjct: 183 YPISWASNEFSGNTGHFSFDAGVLAVI 209


>3k94_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein
           structure initiative; 2.10A {Geobacillus
           thermodenitrificans ng80-2}
          Length = 223

 Score =  123 bits (309), Expect = 4e-29
 Identities = 49/206 (23%), Positives = 86/206 (41%), Gaps = 9/206 (4%)

Query: 14  ILLNGDIRVTNRLLCAIESCK-VIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWSS 72
           I+  G   +   L          +  D G     +    P    GDFDS+    + +   
Sbjct: 5   IVGGGPRELLPDLRFYDGEDVCWVGVDRGTMTLLEAGFRPVRAFGDFDSLPAEDVVKLQQ 64

Query: 73  --IKRIFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLATSLKKKN 130
                  +P +KD  D EIA+  A++  AR I L G+  G R D+   ++ L      + 
Sbjct: 65  AFPDLDVWPAEKDKTDMEIALDWAVEQTARCIRLFGATGG-RLDHLFGNVELLLKYADRP 123

Query: 131 INVTLTSGIEEVFILVPGKHSF--DLPENSVFSIVCLEDIENITITGAKYTLSHHSLSLG 188
           I +        + + +PG ++   D     V  I   E +   T+TG KY L++  +S G
Sbjct: 124 IEIVDRQ--NVLTVHLPGTYTVMYDARYCYVSYIPVSETVAEFTLTGFKYPLTNCHISRG 181

Query: 189 SSRAVSNVVTKN-LTIMLDQGLAILI 213
           S+  +SN + ++  T    +G+ ++I
Sbjct: 182 STLCISNELIQSSGTFSFSEGILMMI 207


>3ihk_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein
           structure initiative, northeast structural genomics
           consortium, NESG, SMR83; HET: TPP; 3.00A {Streptococcus
           mutans}
          Length = 218

 Score =  120 bits (302), Expect = 2e-28
 Identities = 45/206 (21%), Positives = 77/206 (37%), Gaps = 11/206 (5%)

Query: 13  AILLNGDIRVTNRLLCAIESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWS- 71
           A+   GD+    R     +    +  D G     + ++  +L IGDFDSV     +Q   
Sbjct: 5   ALFSGGDLTYFTR-----DFDYFVGIDKGSSFLLKNQLPLDLAIGDFDSVSAEEFKQIKA 59

Query: 72  -SIKRIFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLA--TSLKK 128
            + K +  P +K+  D E+A+        R  I+V    G R D+ L +I L     L  
Sbjct: 60  KAKKLVMAPAEKNDTDTELALKTIFDCFGRVEIIVFGAFGGRIDHMLSNIFLPSDPDLAP 119

Query: 129 KNINVTLTSGIEEVFILVPGKHSFDLPENSVFSIVCLEDIENITITGAKYTLSHHSLSLG 188
                 L      V     G+H  +   + V+      +  +++I  AKY L+  +    
Sbjct: 120 FMRCFKLRDEQNLVEFFPAGQHQIEQATDMVYISFMAANGAHLSIQDAKYELTEENYF-Q 178

Query: 189 SSRAVSNVVTKN-LTIMLDQGLAILI 213
                SN      +   +  G  ++I
Sbjct: 179 KKIYSSNEFKDKPICFSVASGYVVVI 204


>2omk_A Hypothetical protein; succinimide, thiamin pyrophosphokinase,
           structural genomics, PSI-2, protein structure
           initiative; 1.80A {Bacteroides thetaiotaomicron
           vpi-5482}
          Length = 231

 Score =  113 bits (284), Expect = 3e-26
 Identities = 49/212 (23%), Positives = 81/212 (38%), Gaps = 11/212 (5%)

Query: 6   TNKFIDFA-ILLNGDIRVTNRLLCAIESCK-VIAADGGICHASQLKVVPELWIGDFDSVD 63
              +I  A IL NG+       L  +   + V+               P++ IGD DS+ 
Sbjct: 27  NEHYIPQAIILANGEYPAHELPLRLLAEAQFVVCCXXAANEYISRGHTPDVIIGDGDSLL 86

Query: 64  RTLLQQWSSIKRIFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLA 123
               +++SSI  I   +D++  D   AVH     G R I +VG+  G+R D+ L +I+L 
Sbjct: 87  PEYKKRFSSI--ILQISDQETNDQTKAVHYLQSKGIRKIAIVGAT-GKREDHTLGNISLL 143

Query: 124 TSLKKKNINVTLTSGIEEVFILVPGKHSFDLPENSVFSIVCLEDIENITITGAKYTLSHH 183
               +  + V   +     FI V    SF        SI+     + +   G  Y LS  
Sbjct: 144 VEYMRSGMEVRTVT-DYGTFIPVSDTQSFASYPGQQVSIINFGA-KGLKAEGLFYPLSDF 201

Query: 184 SLSLGSSRAVSNVVTKN-LTIMLDQGLAILIS 214
           +      +   N    +  TI       + ++
Sbjct: 202 TN---WWQGTLNEAIADEFTIHCTGEYLVFLA 230


>2g9z_A Thiamine pyrophosphokinase; thiamin-PNP, TPK, thiamin
           pyrophosphokinase, structural genomics, profun,
           bacterial targets at IGS-CNRS, france; HET: VNP; 1.96A
           {Candida albicans} PDB: 2hh9_A*
          Length = 348

 Score =  101 bits (253), Expect = 1e-22
 Identities = 38/280 (13%), Positives = 83/280 (29%), Gaps = 75/280 (26%)

Query: 14  ILLNGDIRVTNRLLCAIESCKV-IAADGG----------------ICHASQLKVVPELWI 56
           ++LN  I +    L   + C++ + ADGG                  +  +   +P+  +
Sbjct: 67  LILNQKITIDLISL--WKKCEIIVCADGGANSLYEYFNDNNXXXXXENLQRSDYIPDYIV 124

Query: 57  GDFDSVDRTLLQQWSS-IKRIFYPNDKDMADGEIAVH----------------------- 92
           GDFDS+   +   + S   +I   + +   D   ++H                       
Sbjct: 125 GDFDSISPDVKTYYESHGSKIIRQSSQYYNDFTKSIHCIQLHYQLNHTKENWFESIDEVD 184

Query: 93  -------------KALQSGARNIILVGSISGQRFDYALQHITLATSLKKK--NINVTLTS 137
                          +      I ++    G RFD  +Q I     + +    + V   +
Sbjct: 185 GLAKLWNGLNNSSDVVVDIDITIYVLN-AIGGRFDQTVQSINQLYIMNEDYPKVTVFFIT 243

Query: 138 GIEEVFILVPGKH------------SFDLPENSVFSIVCLEDIE--NITITGAKYTLSHH 183
             + +F+L  G +                       ++ L +     +   G KY + + 
Sbjct: 244 TNDIIFLLKKGVNYISYKNRLMFHKDNGSSPTPTCGLLPLSNKTPIILNSYGLKYDMRNW 303

Query: 184 SLSLGSSRAVSNVVTKN--LTIMLDQGLAILISRPYDLQR 221
              +    + SN ++      +     + + I     L  
Sbjct: 304 KTEMLGQVSSSNRISGETGFIVECSDDIVMNIEIDVQLDG 343


>1ig0_A Thiamin pyrophosphokinase; protein-substrate complex, compound
           active site, alpha-beta- alpha, beta sandwich,
           transferase; HET: VIB; 1.80A {Saccharomyces cerevisiae}
           SCOP: b.82.6.1 c.100.1.1
          Length = 319

 Score = 75.1 bits (184), Expect = 1e-14
 Identities = 35/253 (13%), Positives = 73/253 (28%), Gaps = 67/253 (26%)

Query: 14  ILLNGDIRVTNRLLCAI-ESCKV-IAADGG---------ICHASQLKVVPELWIGDFDSV 62
           ++LN  I +   L   I +   + + ADG               ++K +P   IGD DS+
Sbjct: 42  LILNQKIDIPRPLFYKIWKLHDLKVCADGAANRLYDYLDDDETLRIKYLPNYIIGDLDSL 101

Query: 63  DRTLLQQWSSIK-RIFYPNDKDMADGEIAV------------------------------ 91
              + + +   K  I     +   D    V                              
Sbjct: 102 SEKVYKYYRKNKVTIIKQTTQYSTDFTKCVNLISLHFNSPEFRSLISNKDNLQSNHGIEL 161

Query: 92  --------------HKALQSGARNIILVGSISGQRFDYALQHITLATSLKKK--NINVTL 135
                             +    +++ +G I G RFD  +  IT   +L +      +  
Sbjct: 162 EKGIHTLYNTMTESLVFSKVTPISLLALGGIGG-RFDQTVHSITQLYTLSENASYFKLCY 220

Query: 136 TSGIEEVFILVPGKH------SFDLPENSVFSIVCL-EDIENITITGAKYTLSH-HSLSL 187
            +  + +F++            F         ++ + E        G K+ + +  +  +
Sbjct: 221 MTPTDLIFLIKKNGTLIEYDPQFRNTCIGNCGLLPIGEATLVKETRGLKWDVKNWPTSVV 280

Query: 188 GSSRAVSNVVTKN 200
               + SN    +
Sbjct: 281 TGRVSSSNRFVGD 293


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 45.3 bits (107), Expect = 1e-05
 Identities = 44/255 (17%), Positives = 77/255 (30%), Gaps = 112/255 (43%)

Query: 44  HASQLKVVPEL--WIG-----DF-----------DSVD----------------RTLLQQ 69
             S  K +  +  +IG      +           DS++                +  +Q 
Sbjct: 293 FVSVRKAI-TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ- 350

Query: 70  WSSIKRI-----FYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLAT 124
                 +       P  K        V  +L +GA+N+++ G         +L    L  
Sbjct: 351 ----DYVNKTNSHLPAGK-------QVEISLVNGAKNLVVSGPPQ------SLYG--LNL 391

Query: 125 SLKKKNINVTLTSGIEEVFILVPGK-------HSFDLPENSVF---------SIVCLEDI 168
           +L+K        SG+++  I  P         + F LP  S F          ++  +D+
Sbjct: 392 TLRK----AKAPSGLDQSRI--PFSERKLKFSNRF-LPVASPFHSHLLVPASDLI-NKDL 443

Query: 169 --ENITITGAK-----Y-TLSHHSL-SLGSS---RAVSNVVTKNL----------TIMLD 206
              N++          Y T     L  L  S   R V  ++   +          T +LD
Sbjct: 444 VKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILD 503

Query: 207 ------QGLAILISR 215
                  GL +L  R
Sbjct: 504 FGPGGASGLGVLTHR 518



 Score = 29.5 bits (66), Expect = 0.55
 Identities = 15/74 (20%), Positives = 33/74 (44%), Gaps = 11/74 (14%)

Query: 152  FDLPENSVFSIVCLEDIENITITGAKYTLSHHSL-------SLGSSRAVSNVVTKNLTIM 204
            F  P  ++      ED+++  +  A  T + HSL       SL    ++ ++V     ++
Sbjct: 1731 FTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLV----EVV 1786

Query: 205  LDQGLAILISRPYD 218
              +G+ + ++ P D
Sbjct: 1787 FYRGMTMQVAVPRD 1800



 Score = 26.8 bits (59), Expect = 4.4
 Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 14/46 (30%)

Query: 123 ATSLKKKNINVTLTSG-IEEVFILVPGKHSFDLPENSVFSIVCLED 167
           A S +     +TL+ G +E         H   +P  S F    L++
Sbjct: 3   AYSTRP----LTLSHGSLE---------HVLLVPTASFFIASQLQE 35



 Score = 26.1 bits (57), Expect = 7.0
 Identities = 39/271 (14%), Positives = 75/271 (27%), Gaps = 110/271 (40%)

Query: 2   SLSHTNKFIDFAILLNGDIRVTNRLLCAIESCKVIAADGGICHASQLK------------ 49
           +LSH +  ++  +L      V                      ASQL+            
Sbjct: 10  TLSHGS--LEHVLL------VPTASFF---------------IASQLQEQFNKILPEPTE 46

Query: 50  ---------VVPELW---------------IGDFDSVDRTLLQQWSSIKRIFYPNDKDMA 85
                       EL                +G FD V    L +    +  +      + 
Sbjct: 47  GFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE---FENCY------LE 97

Query: 86  DGEIAVHKALQS---------GARNIILV-----GSISGQRFDYALQHITLATSLKKKNI 131
             +I  H                   ++        ++ + FD       L  ++ + N 
Sbjct: 98  GNDI--HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA-LFRAVGEGNA 154

Query: 132 NV-TLTSG---IEEVFILVPGKHSFDLPENSVFSI--VCLEDIENITITGAKYTLSHHSL 185
            +  +  G    ++ F         +L +  ++    V + D+  I  +    TLS   L
Sbjct: 155 QLVAIFGGQGNTDDYFE--------ELRD--LYQTYHVLVGDL--IKFSAE--TLSE--L 198

Query: 186 SLGSSRAVSNVVTKNLTIMLDQGLAILISRP 216
              +  A   V T+ L I+  + L    + P
Sbjct: 199 IRTTLDA-EKVFTQGLNIL--EWLENPSNTP 226


>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein; HET:
           NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A*
          Length = 549

 Score = 28.5 bits (63), Expect = 1.4
 Identities = 8/71 (11%), Positives = 21/71 (29%), Gaps = 6/71 (8%)

Query: 139 IEEVFILVPGKHSFDLPENSVFSIVCLEDI--ENITITGAKYTLSH----HSLSLGSSRA 192
                        F +        + ++++  E+        T S     + L+ G    
Sbjct: 448 WSNFRAEGSSSALFRINPIQNLDNISIKNVSIESFEPLSINTTESWMPVWYDLNNGKQIT 507

Query: 193 VSNVVTKNLTI 203
           V++   +  T+
Sbjct: 508 VTDFSIEGFTV 518


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 28.4 bits (62), Expect = 1.5
 Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 16/55 (29%)

Query: 42  ICHASQLKVVPEL---W-------IGDFDSVDRTLLQQWSSIKRIFYPNDKDMAD 86
           I  A +L   PE    W       + + D+  + + Q+W    +      KD+ +
Sbjct: 74  IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAK------KDLEE 122


>3nnp_A Xometc, cystathionine gamma-lyase-like protein; native, Cys-Met
           metabolism PLP-dependent ENZY family,
           pyridoxal-phosphate (PLP; HET: PLP; 2.29A {Xanthomonas
           oryzae PV} PDB: 3e6g_A*
          Length = 400

 Score = 28.3 bits (63), Expect = 1.6
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 67  LQQWSSIKRIFYPNDKDMADGEIAVHKALQSGARNII---LVGSI-SGQRFDYALQHITL 122
           L+   +I+++ YP         +   K   SG   I+   L G   + +RF    +  TL
Sbjct: 282 LETHPAIEKVIYPGLASHPQHVL--AKRQMSGFGGIVSIVLKGGFDAAKRFCEKTELFTL 339

Query: 123 ATSL 126
           A SL
Sbjct: 340 AESL 343


>2uz0_A Esterase, tributyrin esterase; alpha/beta hydrolase, hydrolase, A
           virulence factor for LUNG infection; HET: MSE; 1.7A
           {Streptococcus pneumoniae}
          Length = 263

 Score = 28.2 bits (61), Expect = 1.6
 Identities = 11/130 (8%), Positives = 28/130 (21%), Gaps = 8/130 (6%)

Query: 24  NRLLCAIESCKVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWSSIKRIFYPNDKD 83
              +  +           +                F +         S         +  
Sbjct: 118 KTFIAGLSMGGYGCFKLALTTNRFSHAASFSGALSFQNFSPESQNLGSPAYWRGVFGEIR 177

Query: 84  MADGEIAVHKALQSGARNIILVGSISGQRFDYALQHITLATSLKKKNINVTLTSGIEEVF 143
                    ++L   +     + +  G++      +     +LKK   +VT        +
Sbjct: 178 DWTTSPYSLESLAKKSDKKTKLWAWCGEQDFLYEANNLAVKNLKKLGFDVT--------Y 229

Query: 144 ILVPGKHSFD 153
               G H + 
Sbjct: 230 SHSAGTHEWY 239


>2kco_A 30S ribosomal protein S8E; ribosomal protein of unknown function,
           ribonucleoprotein, PSI-2, protein structure initiative;
           NMR {Sulfolobus solfataricus P2}
          Length = 133

 Score = 28.1 bits (63), Expect = 1.9
 Identities = 7/22 (31%), Positives = 13/22 (59%)

Query: 195 NVVTKNLTIMLDQGLAILISRP 216
            ++ +   I  + GLA++ SRP
Sbjct: 94  GIIIRGAKIRTEAGLAVVTSRP 115


>2dg5_A Gamma-glutamyltranspeptidase; gamma-glutamyltransferase, GGT,
           gamma-GT, glutathione; HET: GLU; 1.60A {Escherichia coli
           K12} SCOP: d.153.1.6 PDB: 2dbu_A 2dbw_A* 2dbx_A* 2e0x_A
           2e0y_A 2z8i_A* 2z8j_A* 2z8k_A*
          Length = 366

 Score = 27.8 bits (61), Expect = 2.1
 Identities = 11/63 (17%), Positives = 20/63 (31%)

Query: 41  GICHASQLKVVPELWIGDFDSVDRTLLQQWSSIKRIFYPNDKDMADGEIAVHKALQSGAR 100
               A    +V +    D  +    +L    + K IF+   + +  G+  V   L     
Sbjct: 149 AFKLARDGFIVNDALADDLKTYGSEVLPNHENSKAIFWKEGEPLKKGDTLVQANLAKSLE 208

Query: 101 NII 103
            I 
Sbjct: 209 MIA 211


>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
           NAD(P)-binding rossmann fold, csgid, oxidoreductase;
           1.95A {Francisella tularensis subsp}
          Length = 247

 Score = 27.6 bits (62), Expect = 2.2
 Identities = 18/114 (15%), Positives = 38/114 (33%), Gaps = 21/114 (18%)

Query: 34  KVIAADGGICHASQLKVVPELWIGDFDSVDRTLLQQWSSIKRIFYPNDKDMADGEIAVHK 93
           ++ A +  I       +V    I   + + R    +W   + +   N   +        +
Sbjct: 75  EIKAENLAIDI-----LVNNAGITRDNLMMRMSEDEW---QSVINTNLSSIFRMSKECVR 126

Query: 94  A-LQSGARNIILVGSISGQR-----FDY-----ALQHIT--LATSLKKKNINVT 134
             ++     II +GS+ G        +Y      +   +  LA  +  +NI V 
Sbjct: 127 GMMKKRWGRIISIGSVVGSAGNPGQTNYCAAKAGVIGFSKSLAYEVASRNITVN 180


>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis,
           pyridoxal 5'-phosphate, gamma- family, lyase; HET: PLP;
           2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A*
           1i48_A* 1i43_A*
          Length = 445

 Score = 27.7 bits (61), Expect = 2.2
 Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 6/64 (9%)

Query: 67  LQQWSSIKRIFYPNDKDMADGEIAVHKALQSGARNIILV----GSISGQRFDYALQHITL 122
           L+    ++ ++YP  +   +  IA  K   +G    +        ++  +F  AL+   +
Sbjct: 328 LEAHPKVRHVYYPGLQSHPEHHIA--KKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYI 385

Query: 123 ATSL 126
           A S 
Sbjct: 386 APSF 389


>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC,
           inhibitor, structural genomics, SGC stockholm,
           structural genomics consortium; HET: PLP; 2.00A {Homo
           sapiens} PDB: 2nmp_A* 3elp_B
          Length = 403

 Score = 27.7 bits (61), Expect = 2.3
 Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 66  LLQQWSSIKRIFYPNDKDMADGEIAVHKALQSGARN-IILVGSIS-GQRFDYALQHITLA 123
            L+    ++++ YP        E+   +           + G++   + F   L+  TLA
Sbjct: 280 FLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLKNLKLFTLA 339

Query: 124 TSL 126
            SL
Sbjct: 340 ESL 342


>2kcp_A 30S ribosomal protein S8E; RPS8E, beta, NESG, ribonucleoprotein,
           structural genomics, PSI-2; NMR {Methanothermobacter
           thermautotrophicusstr} PDB: 2kcy_A
          Length = 98

 Score = 27.6 bits (62), Expect = 2.5
 Identities = 6/22 (27%), Positives = 12/22 (54%)

Query: 195 NVVTKNLTIMLDQGLAILISRP 216
           N++T+   +  + G   + SRP
Sbjct: 56  NIITRGAVVETNLGNVRVTSRP 77


>2e0w_A Gamma-glutamyltranspeptidase; NTN hydrolase, precursor, gamma-GTP,
           post-translational processing, maturation, transferase;
           2.55A {Escherichia coli K12} SCOP: d.153.1.6
          Length = 556

 Score = 27.5 bits (60), Expect = 2.5
 Identities = 10/54 (18%), Positives = 19/54 (35%)

Query: 50  VVPELWIGDFDSVDRTLLQQWSSIKRIFYPNDKDMADGEIAVHKALQSGARNII 103
           +V +    D  +    +L    + K IF+   + +  G+  V   L      I 
Sbjct: 158 IVNDALADDLKTYGSEVLPNHENSKAIFWKEGEPLKKGDTLVQANLAKSLEMIA 211


>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent
           enzymes, C-S gamma lyase, propargylglycine; HET: PPJ;
           2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB:
           1e5f_A*
          Length = 404

 Score = 27.6 bits (61), Expect = 2.6
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 66  LLQQWSSIKRIFYPNDKDMADGEIAVHKALQSGAR-NIILVGSIS-GQRFDYALQHITLA 123
            L+   ++++++YP  +D    +IA  +    G+    IL       ++    L+ ITLA
Sbjct: 277 YLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEGAKKLLDNLKLITLA 336

Query: 124 TSL 126
            SL
Sbjct: 337 VSL 339


>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
           SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
           sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
           3d3e_A* 3d4n_A* 3frj_A* 3hfg_A* 3d5q_A* 2rbe_A* 3byz_A*
           3ey4_A* 3ch6_A* 2irw_A* 2ilt_A* 2bel_A* 1y5m_A* 1y5r_A*
           1xse_A* 3g49_A* 3dwf_A*
          Length = 286

 Score = 26.2 bits (57), Expect = 5.3
 Identities = 13/91 (14%), Positives = 30/91 (32%), Gaps = 19/91 (20%)

Query: 70  WSSIKRIFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFD----------YALQH 119
              +++    N        +A    L+    +I++V S++G+             +AL  
Sbjct: 127 IHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDG 186

Query: 120 IT--LATSLKKKNINVTLTSGIEEVFILVPG 148
               +        +NV+       + + V G
Sbjct: 187 FFSSIRKEYSVSRVNVS-------ITLCVLG 210


>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
           reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
           2.16A {Bacteroides thetaiotaomicron}
          Length = 250

 Score = 26.4 bits (59), Expect = 5.4
 Identities = 25/144 (17%), Positives = 45/144 (31%), Gaps = 22/144 (15%)

Query: 3   LSHTNKFIDFAILLNGDIRVTNRLLCAIESCKVIAADGGICHASQLKVVPELWIGDFDSV 62
           +  +NK +   I+L  DI    +    I+   +    G +       +V    +    S+
Sbjct: 51  IMRSNKHVQEPIVLPLDITDCTKADTEIK--DIHQKYGAVDI-----LVNAAAMFMDGSL 103

Query: 63  DRTLLQQWSSIKRIFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQR-----FDY-- 115
              +   +  I  I       +      + K  ++G   I  V S + +        Y  
Sbjct: 104 SEPV-DNFRKIMEINVIAQYGILKTVTEIMKVQKNGY--IFNVASRAAKYGFADGGIYGS 160

Query: 116 ---ALQHIT--LATSLKKKNINVT 134
              AL  +   L   L    I VT
Sbjct: 161 TKFALLGLAESLYRELAPLGIRVT 184


>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent
           enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB:
           1y4i_A*
          Length = 398

 Score = 26.2 bits (57), Expect = 5.8
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 67  LQQWSSIKRIFYPNDKDMADGEIAVHKALQSGAR-NIILVGSI-SGQRFDYALQHITLAT 124
           L+   SI R++YP        E+   +    G   +  + G + +G+R   +++   LA 
Sbjct: 279 LEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAV 338

Query: 125 SL 126
           SL
Sbjct: 339 SL 340


>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase,
           silver-LEAF inducing substance; HET: NAG; 0.96A
           {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A*
           1kcd_A*
          Length = 335

 Score = 25.7 bits (56), Expect = 7.6
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 158 SVFSIVCLEDIENITITGAKYTLSHHSLSLGSSR-----AVSNVVTKNLTIMLDQGLAIL 212
           S+ SI   + + N+ I G   T S + + + + R     +VS V     TI       +L
Sbjct: 198 SIGSIATGKHVSNVVIKGNTVTRSMYGVRIKAQRTATSASVSGVTYDANTISGIAKYGVL 257

Query: 213 ISRPY 217
           IS+ Y
Sbjct: 258 ISQSY 262


>2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB: 2p2d_A
           2p2n_A 2ocd_A
          Length = 358

 Score = 25.9 bits (56), Expect = 7.8
 Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 17/70 (24%)

Query: 120 ITLATSLKKKNINVTLTSG-----------------IEEVFILVPGKHSFDLPENSVFSI 162
           +   + ++KK+I V  T G                 ++    L+P  H  ++P+ ++   
Sbjct: 15  VPRGSHMQKKSIYVAYTGGTIGMQRSEQGYIPVSGHLQRQLALMPEFHRPEMPDFTIHEY 74

Query: 163 VCLEDIENIT 172
             L D  ++T
Sbjct: 75  TPLMDSSDMT 84


>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein,
           acetylation, cytoplasm, phosphorylation, polymorphism;
           2.15A {Homo sapiens}
          Length = 253

 Score = 25.3 bits (55), Expect = 9.8
 Identities = 11/55 (20%), Positives = 25/55 (45%)

Query: 1   MSLSHTNKFIDFAILLNGDIRVTNRLLCAIESCKVIAADGGICHASQLKVVPELW 55
            +     +++D AI  N     +  L+  + + +V+   G I      +V+P+L+
Sbjct: 181 CNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLY 235


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.322    0.137    0.393 

Gapped
Lambda     K      H
   0.267   0.0813    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,876,870
Number of extensions: 83782
Number of successful extensions: 261
Number of sequences better than 10.0: 1
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 39
Length of query: 222
Length of database: 5,693,230
Length adjustment: 89
Effective length of query: 133
Effective length of database: 3,535,514
Effective search space: 470223362
Effective search space used: 470223362
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.8 bits)