BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781122|ref|YP_003065535.1| putative thiamine
pyrophosphokinase [Candidatus Liberibacter asiaticus str. psy62]
         (222 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781122|ref|YP_003065535.1| putative thiamine pyrophosphokinase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 222

 Score =  454 bits (1168), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 222/222 (100%), Positives = 222/222 (100%)

Query: 1   MSLSHTNKFIDFAILLNGDIRVTNRLLCAIESCKVIAADGGICHASQLKVVPELWIGDFD 60
           MSLSHTNKFIDFAILLNGDIRVTNRLLCAIESCKVIAADGGICHASQLKVVPELWIGDFD
Sbjct: 1   MSLSHTNKFIDFAILLNGDIRVTNRLLCAIESCKVIAADGGICHASQLKVVPELWIGDFD 60

Query: 61  SVDRTLLQQWSSIKRIFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYALQHI 120
           SVDRTLLQQWSSIKRIFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYALQHI
Sbjct: 61  SVDRTLLQQWSSIKRIFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFDYALQHI 120

Query: 121 TLATSLKKKNINVTLTSGIEEVFILVPGKHSFDLPENSVFSIVCLEDIENITITGAKYTL 180
           TLATSLKKKNINVTLTSGIEEVFILVPGKHSFDLPENSVFSIVCLEDIENITITGAKYTL
Sbjct: 121 TLATSLKKKNINVTLTSGIEEVFILVPGKHSFDLPENSVFSIVCLEDIENITITGAKYTL 180

Query: 181 SHHSLSLGSSRAVSNVVTKNLTIMLDQGLAILISRPYDLQRF 222
           SHHSLSLGSSRAVSNVVTKNLTIMLDQGLAILISRPYDLQRF
Sbjct: 181 SHHSLSLGSSRAVSNVVTKNLTIMLDQGLAILISRPYDLQRF 222


>gi|254780602|ref|YP_003065015.1| aspartate aminotransferase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 400

 Score = 26.6 bits (57), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 29/117 (24%)

Query: 123 ATSLKKKNINVTLTSGIEEVFILVPGKHSFDLPENSVFSIV-CLEDIENITITGAKYT-- 179
           AT +  + +    + GI+ V  L  G+  FD+PEN  +++V  +E  E       KYT  
Sbjct: 15  ATLVAAQRVRDLRSKGID-VLCLTAGEPDFDMPENVKYAVVRAMERGET------KYTAV 67

Query: 180 -------------------LSHHSLSLGSSRAVSNVVTKNLTIMLDQGLAILISRPY 217
                              L + S  +       +V+   L   ++ G  +LI RPY
Sbjct: 68  AGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVIFNALMATVNMGDEVLIPRPY 124


>gi|254780964|ref|YP_003065377.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 352

 Score = 23.9 bits (50), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 7/53 (13%)

Query: 24  NRLLCAIESCKVIAADG------GICHASQLKVV-PELWIGDFDSVDRTLLQQ 69
           N+++   E  + I  D       GI   +Q+K+  P LW  +F    RT+L +
Sbjct: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267


>gi|254780845|ref|YP_003065258.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 352

 Score = 23.9 bits (50), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 7/53 (13%)

Query: 24  NRLLCAIESCKVIAADG------GICHASQLKVV-PELWIGDFDSVDRTLLQQ 69
           N+++   E  + I  D       GI   +Q+K+  P LW  +F    RT+L +
Sbjct: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267


>537021.9.peg.75_1 
          Length = 136

 Score = 23.5 bits (49), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 41 GICHASQLKVV-PELWIGDFDSVDRTLLQQ 69
          GI   +Q+K+  P LW  +F    RT+L +
Sbjct: 22 GIDVINQIKIENPHLWTKEFQQKSRTMLHE 51


>gi|254781006|ref|YP_003065419.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 125

 Score = 23.1 bits (48), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 41 GICHASQLKVV-PELWIGDFDSVDRTLLQQ 69
          GI   +Q+K+  P LW  +F    RT+L +
Sbjct: 11 GIDVINQIKIENPHLWTKEFQQKSRTMLHE 40


>gi|254780136|ref|YP_003064549.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 125

 Score = 23.1 bits (48), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 41 GICHASQLKVV-PELWIGDFDSVDRTLLQQ 69
          GI   +Q+K+  P LW  +F    RT+L +
Sbjct: 11 GIDVINQIKIENPHLWTKEFQQKSRTMLHE 40


>gi|254780569|ref|YP_003064982.1| phosphoribosylaminoimidazole synthetase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 357

 Score = 22.3 bits (46), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 7/39 (17%)

Query: 76  IFYPNDKDMADGEIAVHKALQSGARNIILVGSISGQRFD 114
           I +P++KD       + K  Q    NIIL+G ++ QR +
Sbjct: 313 IVHPDNKD------CIIKKFQENNENIILIGEVT-QRSE 344


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.137    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 140,039
Number of Sequences: 1233
Number of extensions: 5693
Number of successful extensions: 19
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 11
length of query: 222
length of database: 328,796
effective HSP length: 71
effective length of query: 151
effective length of database: 241,253
effective search space: 36429203
effective search space used: 36429203
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 36 (18.5 bits)