>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Length = 708

Score = 75.5 bits (186), Expect = 3e-14 Identities = 54/194 (27%), Positives = 96/194 (49%), Gaps = 24/194 (12%) Query: 6 LRLDHISATIG-GIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL 64 + ++ +S + G G ++L D+ L+IK + +VG +GSGKSTL K+ G + +SG + L Sbjct: 474 IVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILL 533 Query: 65 HSSS-----------RLGYLEQNPDLSHFSTISQYI----DDTIKDTIEAPYSPYSL--- 106 + S + YL Q P + S + + ++ +D I A + Sbjct: 534 NGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDD 593 Query: 107 LKKFNLREQDRIE----NLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQE 162 ++ L Q + ++S GQ + +AL + L++ +LILDE T++LD T + Sbjct: 594 IENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNN 653 Query: 163 LLKIN-SALIFVSH 175 LL + +IFV+H Sbjct: 654 LLNLQDKTIIFVAH 667

RPSBLAST alignment for GI: 254781123 and conserved domain: TIGR01193