RPSBLAST alignment for GI: 254781123 and conserved domain: TIGR01193

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Length = 708
 Score = 67.1 bits (164), Expect = 1e-11
 Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 19/195 (9%)

Query: 285 LEADKITKQYD-DRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL 343
           +  + ++  Y     ++ D SL I       IVG +G+GK+TL KLL G  +   G I L
Sbjct: 474 IVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILL 533

Query: 344 -GTNLKIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVA----------GYIKD 392
            G +LK       R+ I+         +GS  ++L++ G   +V+            IKD
Sbjct: 534 NGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLL-GAKENVSQDEIWAACEIAEIKD 592

Query: 393 FLFHPDQAH--SLMKH---LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLER 447
            + +    +   L +    +SGG+K R  +AR L      LI+DE T++LD  T   +  
Sbjct: 593 DIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVN 652

Query: 448 TITQLQ-GTILIVSH 461
            +  LQ  TI+ V+H
Sbjct: 653 NLLNLQDKTIIFVAH 667