RPSBLAST alignment for GI: 254781123 and conserved domain: TIGR01257

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. Length = 2272
 Score = 50.8 bits (121), Expect = 1e-06
 Identities = 56/228 (24%), Positives = 93/228 (40%), Gaps = 31/228 (13%)

Query: 5    ILRLDHISATIGGID--LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNV 62
            ILRL+ ++    G     +  +C+ ++P E   L+G NG+GK+T  K+  G T   SG+ 
Sbjct: 1937 ILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDA 1996

Query: 63   FLHSSSRLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLREQDRIENLS 122
             +   S L  +        +      IDD +  T       Y+ L+     E +++ N S
Sbjct: 1997 TVAGKSILTNISDVHQNMGYCPQFDAIDDLL--TGREHLYLYARLRGVPAEEIEKVANWS 2054

Query: 123  V------------------GQTRCVALMKMLISRPDILILDEPTNHLD--FRTIHW-MEQ 161
            +                  G  R ++    LI  P +++LDEPT  +D   R + W    
Sbjct: 2055 IQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIV 2114

Query: 162  ELLKINSALIFVSHDRRFLETLSTTTVWLDRG---CL---HHLDQGFA 203
             +++   A++  SH     E L T    + +G   CL    HL   F 
Sbjct: 2115 SIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFG 2162