RPSBLAST alignment for GI: 254781123 and conserved domain: TIGR01257
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. Length = 2272
Score = 50.8 bits (121), Expect = 1e-06
Identities = 56/228 (24%), Positives = 93/228 (40%), Gaps = 31/228 (13%)
Query: 5 ILRLDHISATIGGID--LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNV 62
ILRL+ ++ G + +C+ ++P E L+G NG+GK+T K+ G T SG+
Sbjct: 1937 ILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDA 1996
Query: 63 FLHSSSRLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLREQDRIENLS 122
+ S L + + IDD + T Y+ L+ E +++ N S
Sbjct: 1997 TVAGKSILTNISDVHQNMGYCPQFDAIDDLL--TGREHLYLYARLRGVPAEEIEKVANWS 2054
Query: 123 V------------------GQTRCVALMKMLISRPDILILDEPTNHLD--FRTIHW-MEQ 161
+ G R ++ LI P +++LDEPT +D R + W
Sbjct: 2055 IQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIV 2114
Query: 162 ELLKINSALIFVSHDRRFLETLSTTTVWLDRG---CL---HHLDQGFA 203
+++ A++ SH E L T + +G CL HL F
Sbjct: 2115 SIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFG 2162