RPSBLAST alignment for GI: 254781123 and conserved domain: TIGR01257
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. Length = 2272
Score = 50.0 bits (119), Expect = 2e-06
Identities = 55/197 (27%), Positives = 81/197 (41%), Gaps = 24/197 (12%)
Query: 284 VLEADKITKQYD-------DRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKP 336
+L +++TK Y DRL V + GEC G++G NGAGKTT K+LTG
Sbjct: 1937 ILRLNELTKVYSGTSSPAVDRLCVG-----VRPGECFGLLGVNGAGKTTTFKMLTGDTTV 1991
Query: 337 DCGFITLGTNLKIATIDQKREDID--PD-KSLASYLTGSSGDSLMVR------GESRHVA 387
G T+ + I +++ P ++ LTG L R E VA
Sbjct: 1992 TSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVA 2051
Query: 388 GYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLER 447
+ L A L SGG K + A L +++DEPT +D + L
Sbjct: 2052 NWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWN 2111
Query: 448 TITQL---QGTILIVSH 461
TI + +++ SH
Sbjct: 2112 TIVSIIREGRAVVLTSH 2128