RPSBLAST alignment for GI: 254781123 and conserved domain: TIGR01257
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. Length = 2272
Score = 40.0 bits (93), Expect = 0.002
Identities = 45/192 (23%), Positives = 80/192 (41%), Gaps = 31/192 (16%)
Query: 297 RLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKR 356
R V ++ + + +G NGAGKTT L +LTG + P G + +G +D R
Sbjct: 943 RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVR 1002
Query: 357 EDID--PDKSLA-------------SYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQAH 401
+ + P ++ + L G S + + E+ ++D H + +
Sbjct: 1003 QSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEA-----MLEDTGLH-HKRN 1056
Query: 402 SLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQL------QGT 455
+ LSGG + + VA +++DEPT+ +D + R+I L T
Sbjct: 1057 EEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVD----PYSRRSIWDLLLKYRSGRT 1112
Query: 456 ILIVSHDRDFLD 467
I++ +H D D
Sbjct: 1113 IIMSTHHMDEAD 1124