RPSBLAST alignment for GI: 254781123 and conserved domain: TIGR02211
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. Length = 221
Score = 83.9 bits (208), Expect = 1e-16
Identities = 56/198 (28%), Positives = 89/198 (44%), Gaps = 37/198 (18%)
Query: 18 IDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLH-------SSSRL 70
+L+ V LSI E + +VG +GSGKSTLL + G+ P SG V + SS+
Sbjct: 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNER 77
Query: 71 GYLEQNPDLSHFSTISQY----IDDTI------------KDTIEAPYSPYSLLKKFNLRE 114
L I Q+ D T K EA Y +L+K L
Sbjct: 78 AKLRN----KKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGL-- 131
Query: 115 QDRIEN----LSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINS-- 168
+ RI + LS G+ + VA+ + L+++P +++ DEPT +LD + +L++N
Sbjct: 132 EHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNREL 191
Query: 169 --ALIFVSHDRRFLETLS 184
+ + V+HD + L
Sbjct: 192 NTSFLVVTHDLELAKKLD 209