RPSBLAST alignment for GI: 254781123 and conserved domain: TIGR01842
>gnl|CDD|162555 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. Length = 544
Score = 66.6 bits (163), Expect = 2e-11
Identities = 56/194 (28%), Positives = 91/194 (46%), Gaps = 45/194 (23%)
Query: 299 VVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-GTNLK--------- 348
++ S R+ GE + I+GP+G+GK+TL +L+ G P G + L G +LK
Sbjct: 333 TLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGK 392
Query: 349 ---------------IA-TIDQKREDIDPDKSL-ASYLTGSSGDSLMVRGESRHVAGYIK 391
+A I + E+ DP+K + A+ L G L++R GY
Sbjct: 393 HIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVH--ELILRLPD----GY-- 444
Query: 392 DFLFHPDQAHSLMKHLSGGEKMRAIVARVL-AQPFNFLIMDEPTNDLDFETLDFLERTIT 450
D + P A LSGG++ R +AR L P +++DEP ++LD E L I
Sbjct: 445 DTVIGPGGA-----TLSGGQRQRIALARALYGDPK-LVVLDEPNSNLDEEGEQALANAIK 498
Query: 451 QLQ---GTILIVSH 461
L+ T+++++H
Sbjct: 499 ALKARGITVVVITH 512