RPSBLAST alignment for GI: 254781123 and conserved domain: TIGR01842

>gnl|CDD|162555 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. Length = 544
 Score = 66.6 bits (163), Expect = 2e-11
 Identities = 56/194 (28%), Positives = 91/194 (46%), Gaps = 45/194 (23%)

Query: 299 VVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-GTNLK--------- 348
            ++  S R+  GE + I+GP+G+GK+TL +L+ G   P  G + L G +LK         
Sbjct: 333 TLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGK 392

Query: 349 ---------------IA-TIDQKREDIDPDKSL-ASYLTGSSGDSLMVRGESRHVAGYIK 391
                          +A  I +  E+ DP+K + A+ L G     L++R       GY  
Sbjct: 393 HIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVH--ELILRLPD----GY-- 444

Query: 392 DFLFHPDQAHSLMKHLSGGEKMRAIVARVL-AQPFNFLIMDEPTNDLDFETLDFLERTIT 450
           D +  P  A      LSGG++ R  +AR L   P   +++DEP ++LD E    L   I 
Sbjct: 445 DTVIGPGGA-----TLSGGQRQRIALARALYGDPK-LVVLDEPNSNLDEEGEQALANAIK 498

Query: 451 QLQ---GTILIVSH 461
            L+    T+++++H
Sbjct: 499 ALKARGITVVVITH 512