RPSBLAST alignment for GI: 254781123 and conserved domain: cd03237
>gnl|CDD|72996 cd03237, ABC_RNaseL_inhibitor_domain2, The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.. Length = 246
Score = 58.8 bits (142), Expect = 4e-09
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 3/128 (2%)
Query: 27 SIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGYLEQNPDLSHFSTIS 86
SI E I ++G NG GK+T +K+ AG+ +P G++ + + Y Q + T+
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEI-ELDTVSYKPQYIKADYEGTVR 79
Query: 87 QYIDDTIKDTIEAPYSPYSLLKKFNLRE--QDRIENLSVGQTRCVALMKMLISRPDILIL 144
+ KD PY + K + + + LS G+ + VA+ L DI +L
Sbjct: 80 DLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLL 139
Query: 145 DEPTNHLD 152
DEP+ +LD
Sbjct: 140 DEPSAYLD 147