RPSBLAST alignment for GI: 254781123 and conserved domain: cd03240
>gnl|CDD|72999 cd03240, ABC_Rad50, The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.. Length = 204
Score = 59.1 bits (143), Expect = 4e-09
Identities = 40/173 (23%), Positives = 72/173 (41%), Gaps = 30/173 (17%)
Query: 315 IVGPNGAGKTTLLK----LLTGKIKPDCGFITLGTNLKIATIDQKREDIDPDKSLASYLT 370
IVG NGAGKTT+++ LTG++ P+ K+ + R +
Sbjct: 27 IVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDP--KLIREGEVRAQVK------LAFE 78
Query: 371 GSSGDSLMVRGESRHVAGYIKDFLFHPDQAHSLM----KHLSGGEKM------RAIVARV 420
++G + R +A H +++ + SGGEK+ R +A
Sbjct: 79 NANGKKYTIT---RSLAILENVIFCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAET 135
Query: 421 LAQPFNFLIMDEPTNDLDFETL-----DFLERTITQLQGTILIVSHDRDFLDR 468
L +DEPT +LD E + + +E +Q +++++HD + +D
Sbjct: 136 FGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA 188