RPSBLAST alignment for GI: 254781123 and conserved domain: cd03240

>gnl|CDD|72999 cd03240, ABC_Rad50, The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.. Length = 204
 Score = 59.1 bits (143), Expect = 4e-09
 Identities = 40/173 (23%), Positives = 72/173 (41%), Gaps = 30/173 (17%)

Query: 315 IVGPNGAGKTTLLK----LLTGKIKPDCGFITLGTNLKIATIDQKREDIDPDKSLASYLT 370
           IVG NGAGKTT+++     LTG++ P+          K+    + R  +           
Sbjct: 27  IVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDP--KLIREGEVRAQVK------LAFE 78

Query: 371 GSSGDSLMVRGESRHVAGYIKDFLFHPDQAHSLM----KHLSGGEKM------RAIVARV 420
            ++G    +    R +A        H  +++  +       SGGEK+      R  +A  
Sbjct: 79  NANGKKYTIT---RSLAILENVIFCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAET 135

Query: 421 LAQPFNFLIMDEPTNDLDFETL-----DFLERTITQLQGTILIVSHDRDFLDR 468
                  L +DEPT +LD E +     + +E   +Q    +++++HD + +D 
Sbjct: 136 FGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA 188