RPSBLAST alignment for GI: 254781123 and conserved domain: cd03263

>gnl|CDD|73022 cd03263, ABC_subfamily_A, The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.. Length = 220

 Score =  100 bits (251), Expect = 1e-21
 Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 17/195 (8%)

Query: 285 LEADKITKQY--DDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFIT 342
           L+   +TK Y    +  V D SL ++ GE  G++G NGAGKTT LK+LTG+++P  G   
Sbjct: 1   LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60

Query: 343 LGTNLKIATIDQKREDID--P-DKSLASYLTGSSGDSL----MVRGESRHVAGYIKDFLF 395
           +            R+ +   P   +L   LT    + L     ++G  +       + L 
Sbjct: 61  INGYSIRTDRKAARQSLGYCPQFDALFDELTVR--EHLRFYARLKGLPKSEIKEEVELLL 118

Query: 396 H----PDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQ 451
                 D+A+   + LSGG K +  +A  L    + L++DEPT+ LD  +   +   I +
Sbjct: 119 RVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILE 178

Query: 452 LQG--TILIVSHDRD 464
           ++   +I++ +H  D
Sbjct: 179 VRKGRSIILTTHSMD 193