RPSBLAST alignment for GI: 254781123 and conserved domain: cd03294
>gnl|CDD|73053 cd03294, ABC_Pro_Gly_Bertaine, This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 269
Score = 61.7 bits (150), Expect = 5e-10
Identities = 46/181 (25%), Positives = 76/181 (41%), Gaps = 25/181 (13%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLH-------SSSRLGYL 73
+ DV L ++ E ++G +GSGKSTLL+ + EP SG V + S L L
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELREL 99
Query: 74 EQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLR--------------EQDRIE 119
+ F + + T+ + + + + E +
Sbjct: 100 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPD 159
Query: 120 NLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINSAL----IFVSH 175
LS G + V L + L PDIL++DE + LD M+ ELL++ + L +F++H
Sbjct: 160 ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITH 219
Query: 176 D 176
D
Sbjct: 220 D 220