RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254781123|ref|YP_003065536.1| putative ABC transporter,
ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62]
(610 letters)
>gnl|CDD|30834 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 409 bits (1053), Expect = e-115
Identities = 198/538 (36%), Positives = 287/538 (53%), Gaps = 51/538 (9%)
Query: 4 PILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF 63
++ L+++S G LL++V L++ P ERI LVG NG+GKSTLLKI AG EP SG V
Sbjct: 2 SMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVT 61
Query: 64 LHSSSRLGYLEQNPDLSHFSTISQYIDD------TIKDTIEAPYSPYS------------ 105
R+GYL Q P L T+ Y+ + + +E Y+ +
Sbjct: 62 RPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEA 121
Query: 106 ----------------LLKKFNLREQDR-IENLSVGQTRCVALMKMLISRPDILILDEPT 148
L ++DR + +LS G R VAL + L+ PD+L+LDEPT
Sbjct: 122 LLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPT 181
Query: 149 NHLDFRTIHWMEQELLKINSALIFVSHDRRFLETLSTTTVWLDRGCLHHLDQGFAYFESW 208
NHLD +I W+E L + +I VSHDR FL+ ++T + LDRG L ++ +
Sbjct: 182 NHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSYLEQ 241
Query: 209 KKNILQQEQIRYHNLKKKNEAEKEWLRYGVTARR--KRNVRRVKELHEIQKQLQEQKKS- 265
K L+QE Y +K+ E+EW+R G A K+ R+K L +++ +L E++
Sbjct: 242 KAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVE 301
Query: 266 -FHSTIQTHLQTTQSSGKLVLEADKITKQYDD-RLVVKDFSLRIHYGECIGIVGPNGAGK 323
+ GKLVLE + ++K YD RL++KD S RI G+ I IVGPNGAGK
Sbjct: 302 EGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGK 361
Query: 324 TTLLKLLTGKIKPDCGFITLGTNLKIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGES 383
+TLLKLL G++ P G + +G +KI DQ R+++DPDK++ L+ D G+
Sbjct: 362 STLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPD-----GDE 416
Query: 384 RHVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLD 443
+ V Y+ F F + + LSGGEK R ++A++L QP N L++DEPTN LD E+L+
Sbjct: 417 QEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLE 476
Query: 444 FLERTITQLQGTILIVSHDRDFLDRTVTSTIAAQNIEDPNGYWIKYAGGYSDMLVQQK 501
LE + +GT+L+VSHDR FLDR T ++ GGY D L Q+K
Sbjct: 477 ALEEALLDFEGTVLLVSHDRYFLDRVATRIWL------VEDKVEEFEGGYEDYLEQKK 528
Score = 176 bits (448), Expect = 2e-44
Identities = 84/330 (25%), Positives = 147/330 (44%), Gaps = 38/330 (11%)
Query: 284 VLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL 343
++ + ++ Y DR ++++ SL ++ GE IG+VG NGAGK+TLLK+L G+++PD G +T
Sbjct: 3 MITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTR 62
Query: 344 GTNLKIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHP------ 397
L++ + Q+ +DP+K++ Y+ G+ + E + D
Sbjct: 63 PKGLRVGYLSQE-PPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEA 121
Query: 398 -----------------------DQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPT 434
+ LSGG + R +AR L + + L++DEPT
Sbjct: 122 LLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPT 181
Query: 435 NDLDFETLDFLERTITQLQGTILIVSHDRDFLDRTVTSTIAAQNIEDPNGYWIKYAGGYS 494
N LD E++++LE + + GT+++VSHDR FLD T +E G Y G YS
Sbjct: 182 NHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHI-----LELDRGKLTPYKGNYS 236
Query: 495 DMLVQQKKSHPTPQKKNPPAQSLQ---EETVKKEKKQKRKNRLSYSQKLLLERLPQEIHK 551
L Q+ + Q +E +++ K K + + S+ LE+L + +
Sbjct: 237 SYLEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAE 296
Query: 552 IQLKITEKEQQINDQNLISNEGKEIHQLYH 581
+ K GK + + +
Sbjct: 297 ERPVEEGKPLAFRFPPPGKRLGKLVLEFEN 326
Score = 151 bits (382), Expect = 6e-37
Identities = 70/213 (32%), Positives = 114/213 (53%), Gaps = 8/213 (3%)
Query: 4 PILRLDHISATI-GGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNV 62
+L +++S GG LL+D+ I +RI +VG NG+GKSTLLK+ AG P SG V
Sbjct: 320 LVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379
Query: 63 FLHSSSRLGYLEQ-NPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLREQD---RI 118
+ + ++GY +Q +L T+ + + + D E + L +F +D +
Sbjct: 380 KVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEV--RAYLGRFGFTGEDQEKPV 437
Query: 119 ENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINSALIFVSHDRR 178
LS G+ + L K+L+ P++L+LDEPTNHLD ++ +E+ LL ++ VSHDR
Sbjct: 438 GVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRY 497
Query: 179 FLETLSTTTVWLDRGCLHHLDQGFAYFESWKKN 211
FL+ + T +WL + + G+ + KK
Sbjct: 498 FLDRV-ATRIWLVEDKVEEFEGGYEDYLEQKKE 529
>gnl|CDD|36145 KOG0927, KOG0927, KOG0927, Predicted transporter (ABC superfamily)
[General function prediction only].
Length = 614
Score = 199 bits (508), Expect = 1e-51
Identities = 137/534 (25%), Positives = 236/534 (44%), Gaps = 46/534 (8%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL- 64
++++ +S + G++L++DV L + R L+G NGSGKST L+ AG P ++
Sbjct: 76 VKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFY 135
Query: 65 ----------------------HSSSRLGYLEQN-------PDLSHFSTISQYIDDTIKD 95
H RL YL ++ + + + +D+ D
Sbjct: 136 LLSREIEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDND 195
Query: 96 TIEAPYSPYSLLKKFNLREQDR-IENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFR 154
T EA + F QD+ +++LS G AL + L +PD+L+LDEPTNHLD
Sbjct: 196 TFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLE 255
Query: 155 TIHWMEQELLKINSA-LIFVSHDRRFLETLSTTTVWLDRGCLHHLDQGFAYFESWKKNIL 213
I W+E+ L K + L+ VSH + FL + T + LD L + + + + + +
Sbjct: 256 AIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQYVKTRSELE 315
Query: 214 QQEQIRYHNLKKKNEAEKEWLR---YGVTARRKRNVRRVKELHEIQKQLQEQKKSFHSTI 270
+ + Y +K+ K+ + +G ++ + K L +++ +K +
Sbjct: 316 ENQMKAYEKQQKQIAHMKDLIARFGHGSAKLGRKAQSKEKTLDKMEADGLTEKVVGEKVL 375
Query: 271 QTHLQTTQSSGKLVLEADKITKQYDDRLVV-KDFSLRIHYGECIGIVGPNGAGKTTLLKL 329
V+ ++ Y D ++ K + I + +VGPNGAGK+TLLKL
Sbjct: 376 SFRFPEVGKIPPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKL 435
Query: 330 LTGKIKPDCGFITLGTNLKIATIDQKR-EDIDPDKSLASYLTGSSGDSLMVRGESRHVAG 388
+TG ++P G ++ ++ K+ +Q E +D DKS ++ D E +
Sbjct: 436 ITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDE----KELEEMRS 491
Query: 389 YIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERT 448
+ F D M LS G++ R + AR+ + + L++DEPTN LD ET+D L
Sbjct: 492 ILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEA 551
Query: 449 ITQLQGTILIVSHDRDFLDRTVTSTIAAQNIEDPNGYWIKYAGGYSDMLVQQKK 502
I + G +++VSHD + + + NG K+ G KK
Sbjct: 552 INEFPGGVVLVSHDFRLISQVAEEIWVCE-----NGTVTKWDGDIEIYKEHLKK 600
Score = 109 bits (273), Expect = 3e-24
Identities = 62/227 (27%), Positives = 106/227 (46%), Gaps = 17/227 (7%)
Query: 4 PILRLDHISATI-GGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNV 62
P++ + ++S + + + I R+ LVG NG+GKSTLLK+ G +P G V
Sbjct: 388 PVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMV 447
Query: 63 FLHSSSRLGYLEQNP----DLSHFST---ISQYIDDTIKDTIEAPYSPYSLLKKFNL--R 113
HS ++L Q+ DL S + ++ D+ + + S+L +F L
Sbjct: 448 SRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMR------SILGRFGLTGD 501
Query: 114 EQDR-IENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINSALIF 172
Q + LS GQ R V ++ + +P +L+LDEPTNHLD TI + + + + ++
Sbjct: 502 AQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFPGGVVL 561
Query: 173 VSHDRRFLETLSTTTVWLDRGCLHHLDQGFAYFESWKKNILQQEQIR 219
VSHD R + ++ + G + D ++ K +E R
Sbjct: 562 VSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYKEHLKKKRAKEDER 608
>gnl|CDD|35285 KOG0062, KOG0062, KOG0062, ATPase component of ABC transporters
with duplicated ATPase domains/Translation elongation
factor EF-3b [Amino acid transport and metabolism,
Translation, ribosomal structure and biogenesis].
Length = 582
Score = 172 bits (437), Expect = 3e-43
Identities = 124/482 (25%), Positives = 196/482 (40%), Gaps = 29/482 (6%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAA-------GITEPQ 58
+ +D+ GG LL L++ R LVG NG GKSTLL+ A + +
Sbjct: 81 IHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEV 140
Query: 59 SGNVFLHSSSRLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLREQDR- 117
G+ S L D +++ + T+E Y F Q +
Sbjct: 141 RGDDTEALQSVL-----ESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQP 195
Query: 118 IENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINSALIFVSHDR 177
++LS G +AL + L ++PD+L+LDEPTNHLD + W+E L + VSHDR
Sbjct: 196 TKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDR 255
Query: 178 RFLETLSTTTVWLDRGCLHHLDQGFAYFESWKKNILQQEQIRYHNLKKKNEAEKEWL-RY 236
FL T+ T + L+ L + ++ F K + +Q + K + ++ ++
Sbjct: 256 NFLNTVCTDIIHLENLKLDYYKGNYSQFVKTKPEAKKNQQREFEVQMKYRAHLQVFIDKF 315
Query: 237 GVTARRKRNVR-RVKELHEIQKQLQEQKKSFHSTIQTHLQTTQSSGKL---VLEADKITK 292
A R +V+ R+K L ++ + L L +
Sbjct: 316 RYNAARASSVQSRIKMLGKLPALKSTLIEV-----LIGFLFPTEGEVLSPPNLRISYVAF 370
Query: 293 QYD--DRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIA 350
+Y + K L I VG NG GK+TLLK+L G + P G + L+I
Sbjct: 371 EYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIK 430
Query: 351 TIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQAHSLMKHLSGG 410
Q D DK++ + E R G F + A + LSGG
Sbjct: 431 YFAQHHVD-FLDKNVNAVDFMEKSFPGKTEEEIRRHLG---SFGLSGELALQSIASLSGG 486
Query: 411 EKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQGTILIVSHDRDFLDRTV 470
+K R A + L++DEPTN LD ++L L + + G +++VSHD +F+
Sbjct: 487 QKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFISSLC 546
Query: 471 TS 472
Sbjct: 547 KE 548
Score = 112 bits (281), Expect = 3e-25
Identities = 74/313 (23%), Positives = 128/313 (40%), Gaps = 29/313 (9%)
Query: 222 NLKKKNEAEK-------EWLRYGVTARRKRNVRRVKELHEIQKQLQEQKKSFHSTIQTHL 274
+K+ EA + E + R +++V K IQ L+E S + +
Sbjct: 15 KGEKRKEATRVDVKKLTERILAKQEKRFEKSVEGSK----IQVVLEEAYASQAMSRNSGE 70
Query: 275 QTTQSSGKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLL-TGK 333
T+ + D Y ++++ +L + G G+VG NG GK+TLL+ + G+
Sbjct: 71 LTSGEGKSKDIHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQ 130
Query: 334 IKPDCGFITLGTNLKIATID--QKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYI- 390
+ ++ D + ++ D +L + L+ + I
Sbjct: 131 VS------GFHVEQEVRGDDTEALQSVLESDTERLDFL--AEEKELLAGLTLEEIYDKIL 182
Query: 391 KDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTIT 450
F P+ K LSGG +MR +AR L + L++DEPTN LD + +LE +
Sbjct: 183 AGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQ 242
Query: 451 QLQGTILIVSHDRDFLDRTVTSTIAAQNIEDPNGYWIKYAGGYSDMLVQQKKSHPTPQKK 510
+ T LIVSHDR+FL+ T I +N++ + Y G V+ K Q++
Sbjct: 243 TWKITSLIVSHDRNFLNTVCTDIIHLENLK------LDYYKGNYSQFVKTKPEAKKNQQR 296
Query: 511 NPPAQSLQEETVK 523
Q ++
Sbjct: 297 EFEVQMKYRAHLQ 309
>gnl|CDD|72980 cd03221, ABCF_EF-3, ABCF_EF-3 Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions..
Length = 144
Score = 154 bits (390), Expect = 9e-38
Identities = 67/194 (34%), Positives = 103/194 (53%), Gaps = 52/194 (26%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLG 344
+E + ++K Y +L++KD SL I+ G+ IG+VG NGAGK+TLLKL+ G+++PD G +T G
Sbjct: 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWG 60
Query: 345 TNLKIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQAHSLM 404
+ +KI +Q
Sbjct: 61 STVKIGYFEQ-------------------------------------------------- 70
Query: 405 KHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQGTILIVSHDRD 464
LSGGEKMR +A++L + N L++DEPTN LD E+++ LE + + GT+++VSHDR
Sbjct: 71 --LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRY 128
Query: 465 FLDRTVTSTIAAQN 478
FLD+ T I ++
Sbjct: 129 FLDQVATKIIELED 142
Score = 139 bits (351), Expect = 3e-33
Identities = 68/188 (36%), Positives = 98/188 (52%), Gaps = 45/188 (23%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLH 65
+ L+++S T GG LL+D+ L+I P +RI LVG NG+GKSTLLK+ AG EP G V
Sbjct: 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWG 60
Query: 66 SSSRLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLREQDRIENLSVGQ 125
S+ ++GY EQ LS G+
Sbjct: 61 STVKIGYFEQ---------------------------------------------LSGGE 75
Query: 126 TRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINSALIFVSHDRRFLETLST 185
+AL K+L+ P++L+LDEPTNHLD +I +E+ L + +I VSHDR FL+ ++T
Sbjct: 76 KMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFLDQVAT 135
Query: 186 TTVWLDRG 193
+ L+ G
Sbjct: 136 KIIELEDG 143
>gnl|CDD|31320 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 149 bits (377), Expect = 3e-36
Identities = 119/533 (22%), Positives = 203/533 (38%), Gaps = 101/533 (18%)
Query: 1 MSLPILRLDHISATIGG----IDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITE 56
M P+L +++++ + ++DV ++P E + +VG +GSGKSTL G+
Sbjct: 1 MMSPLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLP 60
Query: 57 P----QSGNVFLHSS---------------SRLGYLEQNPDLSHFS---TISQYIDDTIK 94
SG V L R+ + Q+P ++ + TI I + ++
Sbjct: 61 EGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDP-MTSLNPVMTIGDQIREALR 119
Query: 95 DTIEAPYSPY-----SLLKKFNLREQDRIEN----LSVGQTRCVALMKMLISRPDILILD 145
+ + LL++ L + +R + LS G + V + L +P +LI D
Sbjct: 120 LHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIAD 179
Query: 146 EPTNHLDFRTIHWMEQELLKI--------NSALIFVSHDRRFLETLSTTTVWLDRGCLHH 197
EPT LD T + ++L + A++F++HD + L+ V + +G +
Sbjct: 180 EPTTALDVTT----QAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIV- 234
Query: 198 LDQGFAYFESWKKNILQQEQIRY-HNLKKKNEAEKEWLRYGVTARRKRNVRRVKELHEIQ 256
+ G + IL Q Y L + + R + + +
Sbjct: 235 -ETGPT------EEILSNPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLS 287
Query: 257 KQLQEQKKSFHSTIQTHLQTTQSSGKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIV 316
K+ +K F V D S + GE +G+V
Sbjct: 288 KRYGSRKGLFVRERGEVK------------------------AVDDVSFDLREGETLGLV 323
Query: 317 GPNGAGKTTLLKLLTGKIKPDCGFITL-GTNLKIATIDQKREDI-------DPDKSLA-- 366
G +G+GK+TL ++L G + P G I G +L + + +R DP SL
Sbjct: 324 GESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPR 383
Query: 367 ----SYLTGSSGDSLMVRGESRH--VAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARV 420
L G R VA ++ P+ LSGG++ R +AR
Sbjct: 384 MTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARA 443
Query: 421 LAQPFNFLIMDEPTNDLD----FETLDFLERTITQLQGTILIVSHDRDFLDRT 469
LA LI+DEP + LD + L+ L+ +L T L +SHD +
Sbjct: 444 LALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYI 496
Score = 87.9 bits (218), Expect = 6e-18
Identities = 56/233 (24%), Positives = 95/233 (40%), Gaps = 44/233 (18%)
Query: 4 PILRLDHISAT-----------IGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAA 52
P+L + ++S G + + DV ++ E + LVG +GSGKSTL +I A
Sbjct: 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILA 338
Query: 53 GITEPQSGNVFLH------SSSRLGYLE-------QNPD--LSHFSTISQYIDDTI---- 93
G+ P SG++ + L L Q+P L+ T+ + + +
Sbjct: 339 GLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHG 398
Query: 94 -KDTIEAPYSPYSLLKKFNLREQD---RIENLSVGQTRCVALMKMLISRPDILILDEPTN 149
E LL+ L + LS GQ + VA+ + L P +LILDEP +
Sbjct: 399 GGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVS 458
Query: 150 HLD-------FRTIHWMEQELLKINSALIFVSHDRRFLETLSTTTVWLDRGCL 195
LD + +++EL +F+SHD + ++ + G +
Sbjct: 459 ALDVSVQAQVLNLLKDLQEEL---GLTYLFISHDLAVVRYIADRVAVMYDGRI 508
Score = 79.8 bits (197), Expect = 2e-15
Identities = 62/222 (27%), Positives = 92/222 (41%), Gaps = 35/222 (15%)
Query: 284 VLEADKITKQYDDR----LVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDC- 338
+LE + +T ++ V+D S + GE +GIVG +G+GK+TL L G +
Sbjct: 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGR 64
Query: 339 ---GFITL-GTNLKIATIDQKRE----DI-----DPDKSLASYLT-GSSGDSLMVRGESR 384
G + L G +L + + R+ I DP SL +T G +
Sbjct: 65 ITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKG 124
Query: 385 HVAGYIKDF--------LFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTND 436
A K L P++ LSGG + R ++A LA LI DEPT
Sbjct: 125 SRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTA 184
Query: 437 LDFET----LDFLERTITQLQGTILIVSHD----RDFLDRTV 470
LD T LD L+ +L +L ++HD + DR V
Sbjct: 185 LDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVV 226
>gnl|CDD|35289 KOG0066, KOG0066, KOG0066, eIF2-interacting protein ABC50 (ABC
superfamily) [Translation, ribosomal structure and
biogenesis].
Length = 807
Score = 138 bits (349), Expect = 4e-33
Identities = 137/513 (26%), Positives = 223/513 (43%), Gaps = 59/513 (11%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAG------------ 53
+++++ + G L + L+I R LVG NG GK+TLLK A
Sbjct: 265 IKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVL 324
Query: 54 -------ITEPQSGNVFLHSSS-RLGYLEQNPDL-SHFSTISQYIDDTIKDTIE-----A 99
+ + L + RL LE+ L S + +K+ +
Sbjct: 325 LCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIG 384
Query: 100 PYSPYSLLKK------FNLREQDR-IENLSVGQTRCVALMKMLISRPDILILDEPTNHLD 152
S + ++ F+ Q+R S G V+L + L P +L+LDEPTNHLD
Sbjct: 385 ADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLD 444
Query: 153 FRTIHWMEQELLKINSALIFVSHDRRFLETLSTTTVWLDRGCLHHLDQGFAYFESWKKNI 212
+ W++ L L+ VSHD+ FL+++ T + LD LH+ + F KK
Sbjct: 445 LNAVIWLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRGNYTLF---KKMY 501
Query: 213 LQQEQIRYHNLKKKNEAEKEWLRYGVTARR-----KRNVRRVKELHEIQKQLQEQ----- 262
Q+ Q N +K+ + KE G +A++ K + R ++ + Q ++
Sbjct: 502 AQKMQEHEKNYEKQEKQLKELKAEGKSAKQAEKQVKEQLTRKQKKGGKKNQNDDEDAGAP 561
Query: 263 ---KKSFHSTIQTHLQTTQSSGKLVLEADKITKQYDDRLVV-KDFSLRIHYGECIGIVGP 318
++ +++ VL +T Y + + K I I IVGP
Sbjct: 562 ELLQRPKEYSVKFQFPEPTKLNPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGP 621
Query: 319 NGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKR-EDIDPDKSLASYLTGSSGDSL 377
NG GK+TLLKLL GK+ P+ G + L+I DQ E ++ +++ YL
Sbjct: 622 NGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFN--- 678
Query: 378 MVRGESRHVAGYIKDFLFHPDQAHSL-MKHLSGGEKMRAIVARVLAQPFNFLIMDEPTND 436
+ E+R G AH++ +K LSGG+K R +A + + LI+DEPTN+
Sbjct: 679 LPYQEARKQLGTFG----LASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNN 734
Query: 437 LDFETLDFLERTITQLQGTILIVSHDRDFLDRT 469
LD E++D L I + G +++VSHD + T
Sbjct: 735 LDIESIDALAEAINEYNGGVIMVSHDERLIVET 767
Score = 87.1 bits (215), Expect = 1e-17
Identities = 73/235 (31%), Positives = 113/235 (48%), Gaps = 42/235 (17%)
Query: 1 MSLPILRLDHISATIGGID-LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQS 59
++ P+L L ++ G L + + I RI +VG NG GKSTLLK+ G +P
Sbjct: 582 LNPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPND 641
Query: 60 GNVFLHSSSRLGYLEQ--NPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLREQD- 116
G + + R+G+ +Q N L+ T +Y L +KFNL Q+
Sbjct: 642 GELRKNHRLRIGWFDQHANEALNGEETPVEY-----------------LQRKFNLPYQEA 684
Query: 117 ----------------RIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWME 160
+I++LS GQ VAL ++ + PD+LILDEPTN+LD +I +
Sbjct: 685 RKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALA 744
Query: 161 QELLKINSALIFVSHDRRFL-ETLSTTTVWLDRGCLHHLDQGFAYFESWKKNILQ 214
+ + + N +I VSHD R + ET V ++G +D+ FE +KK +L
Sbjct: 745 EAINEYNGGVIMVSHDERLIVETDCNLWVVENQG----IDEIDGDFEDYKKEVLD 795
Score = 67.8 bits (165), Expect = 7e-12
Identities = 87/357 (24%), Positives = 149/357 (41%), Gaps = 35/357 (9%)
Query: 206 ESWKKNILQ-QEQIRYHNLKKKNEAEKEWLRYGVTARRKRNVRRVKELHEIQKQLQEQKK 264
++KK L E+ +NE E E ++ R+++ + +
Sbjct: 187 PNYKKAALSMGEKTPEPVPVVENEPEVEGQEKKKQKDQEEYERQMEGIGSGAELGNHFTV 246
Query: 265 SFHSTIQTHLQTTQSSGKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKT 324
S S T L +++ + +E I+ Q V + SL I YG G+VGPNG GKT
Sbjct: 247 SQLSKSGTQLAQLENAMDIKIENFDISAQGKLLFV--NASLTIVYGRRYGLVGPNGMGKT 304
Query: 325 TLLKLLTGK---IKPDCGF------ITLGTNLKIATI---DQKR-EDIDPDKSLASYLTG 371
TLLK + + I P+ + + I T+ D+KR ++ + L S +
Sbjct: 305 TLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIE- 363
Query: 372 SSGDSLM------VRGESRHVAGY---------IKDFLFHPDQAHSLMKHLSGGEKMRAI 416
GD+ V E R + + F + SGG +MR
Sbjct: 364 -EGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVS 422
Query: 417 VARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQGTILIVSHDRDFLDRTVTSTIA- 475
+AR L L++DEPTN LD + +L+ + + T+LIVSHD+ FLD T I
Sbjct: 423 LARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHL 482
Query: 476 -AQNIEDPNGYWIKYAGGYSDMLVQQKKSHPTPQKKNPPAQSLQEETVKKEKKQKRK 531
Q + G + + Y+ + + +K++ +K+ ++ + + EK+ K +
Sbjct: 483 DNQKLHYYRGNYTLFKKMYAQKMQEHEKNYEKQEKQLKELKAEGKSAKQAEKQVKEQ 539
>gnl|CDD|31438 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 123 bits (311), Expect = 1e-28
Identities = 121/477 (25%), Positives = 193/477 (40%), Gaps = 90/477 (18%)
Query: 28 IKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSS--SRLGYLEQNPDLSHFSTI 85
+P + + ++G NG GKST LKI AG +P G S + ++F +
Sbjct: 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKL 156
Query: 86 S----------QYID-----------DTIKDTIEAPYSPYSLLKKFNLRE--QDRIENLS 122
QY+D + +K E ++++ L + LS
Sbjct: 157 YEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDE-VVERLGLENVLDRDVSELS 215
Query: 123 VGQTRCVALMKMLISRPDILILDEPTNHLDFR---TIHWMEQELLKINSALIFVSHDRRF 179
G+ + VA+ L+ D+ DEP+++LD R + +EL + +I V HD
Sbjct: 216 GGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAV 275
Query: 180 LETLSTTTVWLDRGCLHHLDQGFAYFESWKKNILQQEQIRYHNLKKKNEAEKEWLRYGVT 239
L+ LS D + Y E ++ + K E+L+ +
Sbjct: 276 LDYLS------DFVHI-------LYGEPGVYGVVSKP-------KSVRVGINEYLKGYL- 314
Query: 240 ARRKRNVRRVKELHEIQKQLQEQKKSFHSTIQTHLQTTQSSGKLVLEADKITKQYDD-RL 298
+ NVR E EI+ + + ++E + K Y D +L
Sbjct: 315 --PEENVRFRPE--EIE-------------FEEKPPRDDKARDTLVEYPDLKKTYGDFKL 357
Query: 299 VVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKRED 358
V++ I+ GE IGI+GPNG GKTT +KLL G IKPD G +LK++ Q
Sbjct: 358 EVEEGE--IYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSE---EDLKVSYKPQY--- 409
Query: 359 IDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQAHSLMK----HLSGGEKMR 414
I PD G+ D L S + Y K + P L++ LSGGE R
Sbjct: 410 ISPDY------DGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQR 463
Query: 415 AIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQL----QGTILIVSHDRDFLD 467
+A L++ + ++DEP+ LD E + + I + + T L+V HD +D
Sbjct: 464 VAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMID 520
Score = 64.1 bits (156), Expect = 1e-10
Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 19/169 (11%)
Query: 27 SIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF-LHSSSRLGYLEQNPDLSHFSTI 85
I E I ++G NG GK+T +K+ AG+ +P G+ L S + Y+ + D T+
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYD----GTV 418
Query: 86 SQYIDDTIKDTIEAPYSPYSLLKKFNLRE--QDRIENLSVGQTRCVALMKMLISRPDILI 143
+ I+ + Y ++K NL + + ++ LS G+ + VA+ L D+ +
Sbjct: 419 EDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYL 478
Query: 144 LDEPTNHLD--FRTI------HWMEQELLKINSALIFVSHDRRFLETLS 184
LDEP+ +LD R I ++E + V HD ++ +S
Sbjct: 479 LDEPSAYLDVEQRIIVAKVIRRFIENN----EKTALVVDHDIYMIDYVS 523
>gnl|CDD|72994 cd03235, ABC_Metallic_Cations, ABC component of the metal-type
transporters. This family includes transporters
involved in the uptake of various metallic cations such
as iron, manganese, and zinc. The ATPases of this group
of transporters are very similar to members of
iron-siderophore uptake family suggesting that they
share a common ancestor. The best characterized
metal-type ABC transporters are the YfeABCD system of Y.
pestis, the SitABCD system of Salmonella enterica
serovar Typhimurium, and the SitABCD transporter of
Shigella flexneri. Moreover other uncharacterized
homologs of these metal-type transporters are mainly
found in pathogens like Haemophilus or enteroinvasive E.
coli isolates..
Length = 213
Score = 119 bits (300), Expect = 2e-27
Identities = 60/204 (29%), Positives = 98/204 (48%), Gaps = 20/204 (9%)
Query: 286 EADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-- 343
E + +T Y V++D S + GE + IVGPNGAGK+TLLK + G +KP G I +
Sbjct: 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG 60
Query: 344 ----GTNLKIATIDQKREDIDPD------KSLASYLTGSSGDSLMVRGESRHVAGYIKDF 393
+I + Q R ID D + L G G + + +
Sbjct: 61 KPLEKERKRIGYVPQ-RRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALER 119
Query: 394 LFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQ 453
+ + A + LSGG++ R ++AR L Q + L++DEP +D +T + + + +L+
Sbjct: 120 VGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELR 179
Query: 454 G---TILIVSHD----RDFLDRTV 470
TIL+V+HD ++ DR +
Sbjct: 180 REGMTILVVTHDLGLVLEYFDRVL 203
Score = 96.3 bits (240), Expect = 2e-20
Identities = 53/218 (24%), Positives = 102/218 (46%), Gaps = 33/218 (15%)
Query: 7 RLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL-- 64
++ ++ + GG +L+DV +KP E + +VG NG+GKSTLLK G+ +P SG++ +
Sbjct: 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG 60
Query: 65 ----HSSSRLGYLEQNPDLSHFSTISQYIDDTIKDTIE-APYSPYSLLKKFNLREQDRIE 119
R+GY+ Q + I +++D + Y L ++ + ++ +++
Sbjct: 61 KPLEKERKRIGYVPQRRSIDRDFPI------SVRDVVLMGLYGHKGLFRRLSKADKAKVD 114
Query: 120 N-----------------LSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQE 162
LS GQ + V L + L+ PD+L+LDEP +D +T + +
Sbjct: 115 EALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYEL 174
Query: 163 LLKINS---ALIFVSHDRRFLETLSTTTVWLDRGCLHH 197
L ++ ++ V+HD + + L+R +
Sbjct: 175 LRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVVAS 212
>gnl|CDD|72984 cd03225, ABC_cobalt_CbiO_domain1, Domain I of the ABC component of
a cobalt transport family found in bacteria, archaea,
and eukaryota. The transition metal cobalt is an
essential component of many enzymes and must be
transported into cells in appropriate amounts when
needed. This ABC transport system of the CbiMNQO family
is involved in cobalt transport in association with the
cobalamin (vitamin B12) biosynthetic pathways. Most of
cobalt (Cbi) transport systems possess a separate CbiN
component, the cobalt-binding periplasmic protein, and
they are encoded by the conserved gene cluster cbiMNQO.
Both the CbiM and CbiQ proteins are integral cytoplasmic
membrane proteins, and the CbiO protein has the linker
peptide and the Walker A and B motifs commonly found in
the ATPase components of the ABC-type transport
systems..
Length = 211
Score = 116 bits (292), Expect = 2e-26
Identities = 64/219 (29%), Positives = 100/219 (45%), Gaps = 41/219 (18%)
Query: 7 RLDHISATIGGID--LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL 64
L ++S + L D+ L+IK E + +VG NGSGKSTLL++ G+ P SG V +
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 65 -----------HSSSRLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSL------- 106
++G + QNPD Q+ T+++ + + +L
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNPD-------DQFFGPTVEEEVA--FGLENLGLPEEEI 111
Query: 107 -------LKKFNLRE-QDR-IENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIH 157
L+ L +DR LS GQ + VA+ +L PDIL+LDEPT LD
Sbjct: 112 EERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRR 171
Query: 158 WMEQELLKINSA---LIFVSHDRRFLETLSTTTVWLDRG 193
+ + L K+ + +I V+HD L L+ + L+ G
Sbjct: 172 ELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210
Score = 109 bits (275), Expect = 2e-24
Identities = 60/205 (29%), Positives = 93/205 (45%), Gaps = 16/205 (7%)
Query: 286 EADKITKQYDD--RLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL 343
E ++ Y D R + D SL I GE + IVGPNG+GK+TLL+LL G + P G + +
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 344 -GTNLKIATIDQKREDI-----DPD-----KSLASYLTGSSGDSLMVRGESRHVAGYIKD 392
G +L ++ + R + +PD ++ + + + E +
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALE 120
Query: 393 FLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQL 452
+ LSGG+K R +A VLA + L++DEPT LD L + +L
Sbjct: 121 LVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKL 180
Query: 453 QG---TILIVSHDRDFLDRTVTSTI 474
+ TI+IV+HD D L I
Sbjct: 181 KAEGKTIIIVTHDLDLLLELADRVI 205
>gnl|CDD|72973 cd03214, ABC_Iron-Siderophores_B12_Hemin, ABC transporters,
involved in the uptake of siderophores, heme, and
vitamin B12, are widely conserved in bacteria and
archaea. Only very few species lack representatives of
the siderophore family transporters. The E. coli BtuCD
protein is an ABC transporter mediating vitamin B12
uptake. The two ATP-binding cassettes (BtuD) are in
close contact with each other, as are the two
membrane-spanning subunits (BtuC); this arrangement is
distinct from that observed for the E. coli lipid
flippase MsbA. The BtuC subunits provide 20
transmembrane helices grouped around a translocation
pathway that is closed to the cytoplasm by a gate
region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters..
Length = 180
Score = 113 bits (286), Expect = 1e-25
Identities = 62/182 (34%), Positives = 90/182 (49%), Gaps = 30/182 (16%)
Query: 286 EADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-G 344
E + ++ Y R V+ D SL I GE +GI+GPNGAGK+TLLK L G +KP G I L G
Sbjct: 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDG 60
Query: 345 TNLKIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQAHSLM 404
+L + + I +Y+ ++ + G + A
Sbjct: 61 KDLASLSPKELARKI-------AYVP-----------QALELLG-LAHL------ADRPF 95
Query: 405 KHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDF----ETLDFLERTITQLQGTILIVS 460
LSGGE+ R ++AR LAQ L++DEPT+ LD E L+ L R + T+++V
Sbjct: 96 NELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVL 155
Query: 461 HD 462
HD
Sbjct: 156 HD 157
Score = 95.5 bits (238), Expect = 3e-20
Identities = 53/195 (27%), Positives = 88/195 (45%), Gaps = 21/195 (10%)
Query: 7 RLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHS 66
++++S GG +L D+ LSI+ E + ++G NG+GKSTLLK AG+ +P SG + L
Sbjct: 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDG 60
Query: 67 SSRLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLREQDRIENLSVGQT 126
L L + + Q ++ LL +L ++ LS G+
Sbjct: 61 KD-LASLSPKELARKIAYVPQALE---------------LLGLAHLADRP-FNELSGGER 103
Query: 127 RCVALMKMLISRPDILILDEPTNHLDF----RTIHWMEQELLKINSALIFVSHDRRFLET 182
+ V L + L P IL+LDEPT+HLD + + + + ++ V HD
Sbjct: 104 QRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163
Query: 183 LSTTTVWLDRGCLHH 197
+ + L G +
Sbjct: 164 YADRVILLKDGRIVA 178
>gnl|CDD|31317 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 112 bits (281), Expect = 3e-25
Identities = 60/214 (28%), Positives = 95/214 (44%), Gaps = 20/214 (9%)
Query: 284 VLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL 343
+LE + ++ Y + ++ D S I GE GI+GPNG+GK+TLLK L G +KP G + L
Sbjct: 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLL 61
Query: 344 -GTNL----------KIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRH----VAG 388
G ++ K+A + Q L G + S+ V
Sbjct: 62 DGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEE 121
Query: 389 YIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERT 448
++ A + LSGGE+ R ++AR LAQ L++DEPT+ LD +
Sbjct: 122 ALELLGLE-HLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLEL 180
Query: 449 ITQLQG----TILIVSHDRDFLDRTVTSTIAAQN 478
+ L T+++V HD + R I ++
Sbjct: 181 LRDLNREKGLTVVMVLHDLNLAARYADHLILLKD 214
Score = 104 bits (262), Expect = 5e-23
Identities = 63/248 (25%), Positives = 101/248 (40%), Gaps = 47/248 (18%)
Query: 4 PILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF 63
+L ++++S GG +L D+ SI E ++G NGSGKSTLLK AG+ +P+SG V
Sbjct: 1 MMLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVL 60
Query: 64 LHSSS-----------RLGYLEQNPDLS---------------HFSTISQYIDDTIKDTI 97
L +L Y+ Q+P H + + +
Sbjct: 61 LDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVE 120
Query: 98 EAPYSPYSLLKKFNLRE--QDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRT 155
EA L+ L ++ LS G+ + V + + L IL+LDEPT+HLD
Sbjct: 121 EA-------LELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAH 173
Query: 156 -IHWME---QELLKINSALIFVSHDRRFLETLSTTTVWLDRGCLHHLDQGFAYFESWKKN 211
I +E + ++ V HD + + L G + QG +
Sbjct: 174 QIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIV--AQGTP------EE 225
Query: 212 ILQQEQIR 219
+L +E +R
Sbjct: 226 VLTEENLR 233
>gnl|CDD|31318 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 111 bits (280), Expect = 4e-25
Identities = 58/209 (27%), Positives = 98/209 (46%), Gaps = 22/209 (10%)
Query: 283 LVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFIT 342
++E + +T Y +R V++D SL + GE ++GPNGAGK+TLLK + G +KP G I
Sbjct: 3 PMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIK 62
Query: 343 L--------GTNLKIATIDQKREDIDPD------KSLASYLTGSSGDSLMVRGESRHVAG 388
+ L+I + QK +D + G G + + +
Sbjct: 63 IFGKPVRKRRKRLRIGYVPQKSS-VDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVD 121
Query: 389 YIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERT 448
+ + D + LSGG+K R ++AR LAQ + L++DEP +D +
Sbjct: 122 EALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDL 181
Query: 449 ITQLQG---TILIVSHD----RDFLDRTV 470
+ +L+ T+L+V+HD + DR +
Sbjct: 182 LKELRQEGKTVLMVTHDLGLVMAYFDRVI 210
Score = 100 bits (250), Expect = 1e-21
Identities = 55/223 (24%), Positives = 104/223 (46%), Gaps = 35/223 (15%)
Query: 4 PILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF 63
P++ +++++ + G +L+D+ LS++ E L+G NG+GKSTLLK G+ +P SG +
Sbjct: 3 PMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIK 62
Query: 64 L--------HSSSRLGYLEQNPDLSHFSTISQYIDDTIKDTIE-APYSPYSLLKKFNLRE 114
+ R+GY+ Q + I T+KD + Y ++ N ++
Sbjct: 63 IFGKPVRKRRKRLRIGYVPQKSSVDRSFPI------TVKDVVLLGRYGKKGWFRRLNKKD 116
Query: 115 QDRIEN-----------------LSVGQTRCVALMKMLISRPDILILDEPTNHLDFRT-- 155
+++++ LS GQ + V L + L PD+L+LDEP +D
Sbjct: 117 KEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQK 176
Query: 156 -IHWMEQELLKINSALIFVSHDRRFLETLSTTTVWLDRGCLHH 197
I+ + +EL + ++ V+HD + + L+R +
Sbjct: 177 EIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIAS 219
>gnl|CDD|31313 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 111 bits (279), Expect = 6e-25
Identities = 58/189 (30%), Positives = 98/189 (51%), Gaps = 16/189 (8%)
Query: 4 PILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF 63
+L ++ +S + GG+++L+D+ LS++ E + ++G +G GKSTLL++ AG+ +P SG V
Sbjct: 2 ALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVL 61
Query: 64 LHS------SSRLGYLEQNPDLSHFSTISQYI----DDTIKDTIEAPYSPYSLLKKFNL- 112
L +GY+ Q L + T+ + + K EA LL+ L
Sbjct: 62 LDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLA 121
Query: 113 -REQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKI----N 167
E LS G + VA+ + L +RP +L+LDEP LD T ++ ELL++
Sbjct: 122 GFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETR 181
Query: 168 SALIFVSHD 176
++ V+HD
Sbjct: 182 KTVLLVTHD 190
Score = 97.2 bits (242), Expect = 1e-20
Identities = 57/193 (29%), Positives = 91/193 (47%), Gaps = 11/193 (5%)
Query: 282 KLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFI 341
+LE + ++K + V++D +L + GE + I+GP+G GK+TLL+L+ G KP G +
Sbjct: 1 MALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 342 TLGTNLKIATIDQKREDIDPDKSLASYLT--GSSGDSLMVRGESRHVAGYIKDFLFH--- 396
L + + + +L +LT + L +RG+S+ A L
Sbjct: 61 LLDGR-PVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVG 119
Query: 397 -PDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFET----LDFLERTITQ 451
LSGG + R +AR LA L++DEP LD T D L R +
Sbjct: 120 LAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEE 179
Query: 452 LQGTILIVSHDRD 464
+ T+L+V+HD D
Sbjct: 180 TRKTVLLVTHDVD 192
>gnl|CDD|31319 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 109 bits (274), Expect = 2e-24
Identities = 66/224 (29%), Positives = 100/224 (44%), Gaps = 38/224 (16%)
Query: 3 LPILRLDHISATI-GGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGN 61
L ++ +++S G L+DV L I+ ER+ L+G NGSGKSTLLK+ G+ +P SG
Sbjct: 1 LRMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGE 60
Query: 62 VFLHSS------------SRLGYLEQNPDLSHFSTISQYIDDTIKDTI------------ 97
V + ++G + QNPD Q T++D +
Sbjct: 61 VLVDGLDTSSEKSLLELRQKVGLVFQNPD-------DQLFGPTVEDEVAFGLENLGLPRE 113
Query: 98 EAPYSPYSLLKKFNL--REQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRT 155
E L+ L NLS GQ + VA+ +L P+IL+LDEPT LD +
Sbjct: 114 EIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKG 173
Query: 156 IHWMEQELLKIN----SALIFVSHDRRFLETLSTTTVWLDRGCL 195
+ + L K+ +I V+HD + + V LD G +
Sbjct: 174 RRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKI 217
Score = 99.2 bits (247), Expect = 3e-21
Identities = 62/201 (30%), Positives = 98/201 (48%), Gaps = 19/201 (9%)
Query: 284 VLEADKITKQYDDRL-VVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFIT 342
++EA+ ++ +Y R +KD SL I GE + ++GPNG+GK+TLLKLL G +KP G +
Sbjct: 3 MIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVL 62
Query: 343 LG-----TNLKIATIDQKREDI--DPDKSLASYLTGSSGD-SLMVRGESRH-----VAGY 389
+ + + + QK + +PD L L G R VA
Sbjct: 63 VDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEA 122
Query: 390 IKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTI 449
++ + +LSGG+K R +A VLA L++DEPT LD + L +
Sbjct: 123 LELVGLE-ELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELL 181
Query: 450 TQLQ----GTILIVSHDRDFL 466
+L+ TI+IV+HD + +
Sbjct: 182 KKLKEEGGKTIIIVTHDLELV 202
>gnl|CDD|72989 cd03230, ABC_DR_subfamily_A, This family of ATP-binding proteins
belongs to a multisubunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea,
these transporters usually include an ATP-binding
protein and one or two integral membrane proteins.
Eukaryote systems of the ABCA subfamily display ABC
domains that are quite similar to this family. The
ATP-binding domain shows the highest similarity between
all members of the ABC transporter family. ABC
transporters are a subset of nucleotide hydrolases that
contain a signature motif, Q-loop, and H-loop/switch
region, in addition to, the Walker A motif/P-loop and
Walker B motif commonly found in a number of ATP- and
GTP-binding and hydrolyzing proteins..
Length = 173
Score = 108 bits (273), Expect = 3e-24
Identities = 50/203 (24%), Positives = 86/203 (42%), Gaps = 43/203 (21%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLH 65
+ + ++S G L D+ L+++ E L+G NG+GK+TL+KI G+ +P SG + +
Sbjct: 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVL 60
Query: 66 SSS----------RLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLREQ 115
R+GYL + P L T+ + +
Sbjct: 61 GKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK------------------------- 95
Query: 116 DRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINS---ALIF 172
LS G + +AL + L+ P++LILDEPT+ LD + + L ++ ++
Sbjct: 96 -----LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILL 150
Query: 173 VSHDRRFLETLSTTTVWLDRGCL 195
SH E L L+ G +
Sbjct: 151 SSHILEEAERLCDRVAILNNGRI 173
Score = 105 bits (263), Expect = 5e-23
Identities = 61/190 (32%), Positives = 91/190 (47%), Gaps = 36/190 (18%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFIT-L 343
+E ++K+Y + + D SL + GE G++GPNGAGKTTL+K++ G +KPD G I L
Sbjct: 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVL 60
Query: 344 GTNLKIATIDQKRE-DIDPDK-SLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQAH 401
G ++K + KR P++ SL LT ++ L
Sbjct: 61 GKDIKKEPEEVKRRIGYLPEEPSLYENLTV-------------------RENL------- 94
Query: 402 SLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQL---QGTILI 458
LSGG K R +A+ L LI+DEPT+ LD E+ + +L TIL+
Sbjct: 95 ----KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILL 150
Query: 459 VSHDRDFLDR 468
SH + +R
Sbjct: 151 SSHILEEAER 160
>gnl|CDD|31326 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 108 bits (270), Expect = 6e-24
Identities = 57/199 (28%), Positives = 92/199 (46%), Gaps = 14/199 (7%)
Query: 284 VLEADKITKQY-DDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFIT 342
V+E +TK+Y D+ + S + GE G++GPNGAGKTTLLK+L G +KP G I
Sbjct: 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEIL 63
Query: 343 LGTNLKIATIDQKREDI---------DPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDF 393
+ + + R I P+ ++ L + + + E+ + +
Sbjct: 64 VLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLEL 123
Query: 394 LFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD----FETLDFLERTI 449
D+A+ ++ LSGG K R +A L LI+DEPT+ LD E + L
Sbjct: 124 FGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELA 183
Query: 450 TQLQGTILIVSHDRDFLDR 468
+ TIL+ +H + +
Sbjct: 184 KEGGVTILLSTHILEEAEE 202
Score = 108 bits (270), Expect = 6e-24
Identities = 55/214 (25%), Positives = 101/214 (47%), Gaps = 21/214 (9%)
Query: 3 LPILRLDHISATIGG-IDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGN 61
+ ++ + +++ GG L V ++P E L+G NG+GK+TLLKI AG+ +P SG
Sbjct: 2 IEVIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGE 61
Query: 62 VFL----------HSSSRLGYLEQNPDLSHFSTISQYIDDTIK----DTIEAPYSPYSLL 107
+ + R+GY+ Q P L T+ + ++ + EA LL
Sbjct: 62 ILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELL 121
Query: 108 KKFNLRE--QDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLK 165
+ F L + ++ LS G + +++ L+ P++LILDEPT+ LD + + + L +
Sbjct: 122 ELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRE 181
Query: 166 I----NSALIFVSHDRRFLETLSTTTVWLDRGCL 195
+ ++ +H E L + L+ G +
Sbjct: 182 LAKEGGVTILLSTHILEEAEELCDRVIILNDGKI 215
>gnl|CDD|73018 cd03259, ABC_Carb_Solutes_like, ABC Carbohydrate and Solute
Transporters-like subgroup. This family is comprised of
proteins involved in the transport of apparently
unrelated solutes and proteins specific for di- and
oligosaccharides and polyols. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters
are a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 213
Score = 104 bits (261), Expect = 7e-23
Identities = 57/209 (27%), Positives = 95/209 (45%), Gaps = 19/209 (9%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLH 65
L L +S T G + L D+ L+++P E + L+G +G GK+TLL++ AG+ P SG + +
Sbjct: 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILID 60
Query: 66 SSS---------RLGYLEQNPDLSHFSTISQYID------DTIKDTIEAPYSPYSLLKKF 110
+G + Q+ L T+++ I K I A L
Sbjct: 61 GRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGL 120
Query: 111 NLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINSAL 170
LS GQ + VAL + L P +L+LDEP + LD + + +EL ++ L
Sbjct: 121 EGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQREL 180
Query: 171 ----IFVSHDRRFLETLSTTTVWLDRGCL 195
I+V+HD+ L+ ++ G +
Sbjct: 181 GITTIYVTHDQEEALALADRIAVMNEGRI 209
Score = 93.3 bits (232), Expect = 2e-19
Identities = 51/193 (26%), Positives = 92/193 (47%), Gaps = 14/193 (7%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLG 344
LE ++K Y + D SL + GE + ++GP+G GKTTLL+L+ G +PD G I +
Sbjct: 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILID 60
Query: 345 TNLKIATIDQKREDID---------PDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLF 395
+ + +R +I P ++A + + + E R + + +
Sbjct: 61 -GRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVG 119
Query: 396 HPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFET----LDFLERTITQ 451
+ LSGG++ R +AR LA+ + L++DEP + LD + + L+ +
Sbjct: 120 LEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRE 179
Query: 452 LQGTILIVSHDRD 464
L T + V+HD++
Sbjct: 180 LGITTIYVTHDQE 192
>gnl|CDD|33633 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 104 bits (260), Expect = 9e-23
Identities = 58/221 (26%), Positives = 99/221 (44%), Gaps = 32/221 (14%)
Query: 1 MSLPILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSG 60
M P L + ++S + G + D+ L IK E + L+G +G GK+TLL++ AG +P SG
Sbjct: 1 MPKPALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60
Query: 61 NVFLHSSS---------RLGYLEQNPDLSHFSTISQYI-----------DDTIKDTIEAP 100
+ L +G + Q+ L T+ + + IK +E
Sbjct: 61 EILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEE- 119
Query: 101 YSPYSLLKKFNL--REQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHW 158
L+ L + LS GQ + VAL + L+ P +L+LDEP + LD +
Sbjct: 120 -----ALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQ 174
Query: 159 MEQELLKINSAL----IFVSHDRRFLETLSTTTVWLDRGCL 195
M +EL ++ L ++V+HD+ +S ++ G +
Sbjct: 175 MRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRI 215
Score = 88.4 bits (219), Expect = 5e-18
Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 27/205 (13%)
Query: 280 SGKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCG 339
K LE ++K + D V D SL I GE + ++GP+G GKTTLL+++ G +P G
Sbjct: 1 MPKPALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60
Query: 340 FITLG----TNLKIATIDQKREDID---PDKSLASYLT--GSSGDSLMVRGES------R 384
I L T++ +KR I +L ++T + L VR +
Sbjct: 61 EILLDGEDITDVPP----EKR-PIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKA 115
Query: 385 HVAGYIKDFLFHPDQ-AHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLD 443
V ++ L + A LSGG++ R +AR L L++DEP + LD + +
Sbjct: 116 RVEEALE--LVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLRE 173
Query: 444 FLERTITQLQG----TILIVSHDRD 464
+ + + +LQ T + V+HD++
Sbjct: 174 QMRKELKELQRELGITFVYVTHDQE 198
>gnl|CDD|72971 cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter
nucleotide-binding domain; ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 157
Score = 104 bits (260), Expect = 1e-22
Identities = 47/187 (25%), Positives = 84/187 (44%), Gaps = 46/187 (24%)
Query: 286 EADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-G 344
E + ++ +Y R + + SL + GE + +VGPNG+GK+TLL+ + G +KP G I + G
Sbjct: 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDG 60
Query: 345 TNLKIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQAHSLM 404
++ +++ R I +
Sbjct: 61 KDIAKLPLEELRRRI------------------------------------------GYV 78
Query: 405 KHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG---TILIVSH 461
LSGG++ R +AR L + L++DEPT+ LD + + L + +L T++IV+H
Sbjct: 79 PQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTH 138
Query: 462 DRDFLDR 468
D + +
Sbjct: 139 DPELAEL 145
Score = 101 bits (254), Expect = 4e-22
Identities = 53/190 (27%), Positives = 83/190 (43%), Gaps = 37/190 (19%)
Query: 7 RLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHS 66
++++S GG L +V L++K E + LVG NGSGKSTLL+ AG+ +P SG + +
Sbjct: 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDG 60
Query: 67 SSRLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLREQDRIENLSVGQT 126
+ L + Q LS GQ
Sbjct: 61 K-DIAKLPLEELRRRIGYVPQ---------------------------------LSGGQR 86
Query: 127 RCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKI---NSALIFVSHDRRFLETL 183
+ VAL + L+ PD+L+LDEPT+ LD + + + L ++ +I V+HD E
Sbjct: 87 QRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146
Query: 184 STTTVWLDRG 193
+ + L G
Sbjct: 147 ADRVIVLKDG 156
>gnl|CDD|72988 cd03229, ABC_Class3, This class is comprised of all BPD (Binding
Protein Dependent) systems that are largely represented
in archaea and eubacteria and are primarily involved in
scavenging solutes from the environment. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 178
Score = 102 bits (255), Expect = 4e-22
Identities = 56/190 (29%), Positives = 93/190 (48%), Gaps = 30/190 (15%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLG 344
LE ++K+Y + V+ D SL I GE + ++GP+G+GK+TLL+ + G +PD G I +
Sbjct: 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILID 60
Query: 345 TNLKIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDF-LF-HPDQAHS 402
+ +++ P + R + +DF LF H +
Sbjct: 61 G----EDLTDLEDELPPLR--------------------RRIGMVFQDFALFPHLTVLEN 96
Query: 403 LMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG----TILI 458
+ LSGG++ R +AR LA + L++DEPT+ LD T + + LQ T+++
Sbjct: 97 IALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVL 156
Query: 459 VSHDRDFLDR 468
V+HD D R
Sbjct: 157 VTHDLDEAAR 166
Score = 100 bits (251), Expect = 1e-21
Identities = 60/206 (29%), Positives = 90/206 (43%), Gaps = 47/206 (22%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLH 65
L L ++S G +L DV L+I+ E + L+G +GSGKSTLL+ AG+ EP SG++ +
Sbjct: 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILID 60
Query: 66 -------------SSSRLGYLEQNPDL-SHFSTISQYIDDTIKDTIEAPYSPYSLLKKFN 111
R+G + Q+ L H T+ + I
Sbjct: 61 GEDLTDLEDELPPLRRRIGMVFQDFALFPHL---------TVLENIALG----------- 100
Query: 112 LREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINS--- 168
LS GQ + VAL + L PD+L+LDEPT+ LD T + L + +
Sbjct: 101 ---------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLG 151
Query: 169 -ALIFVSHDRRFLETLSTTTVWLDRG 193
++ V+HD L+ V L G
Sbjct: 152 ITVVLVTHDLDEAARLADRVVVLRDG 177
>gnl|CDD|73004 cd03245, ABCC_bacteriocin_exporters, ABC-type bacteriocin
exporters. Many non-lantibiotic bacteriocins of lactic
acid bacteria are produced as precursors which have
N-terminal leader peptides that share similarities in
amino acid sequence and contain a conserved processing
site of two glycine residues in positions -1 and -2. A
dedicated ATP-binding cassette (ABC) transporter is
responsible for the proteolytic cleavage of the leader
peptides and subsequent translocation of the
bacteriocins across the cytoplasmic membrane..
Length = 220
Score = 100 bits (251), Expect = 1e-21
Identities = 61/202 (30%), Positives = 100/202 (49%), Gaps = 26/202 (12%)
Query: 18 IDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHS----------- 66
I L +V L+I+ E++ ++G GSGKSTLLK+ AG+ +P SG+V L
Sbjct: 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADL 76
Query: 67 SSRLGYLEQNPDLSHFSTISQYI--------DDTIKDTIE-APYSPYSLL--KKFNLREQ 115
+GY+ Q+ L + T+ I D+ I E A + + +L+
Sbjct: 77 RRNIGYVPQDVTL-FYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIG 135
Query: 116 DRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQEL--LKINSALIFV 173
+R LS GQ + VAL + L++ P IL+LDEPT+ +D + +++ L L + LI +
Sbjct: 136 ERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIII 195
Query: 174 SHDRRFLETLSTTTVWLDRGCL 195
+H L L + +D G +
Sbjct: 196 THRPSLL-DLVDRIIVMDSGRI 216
Score = 78.3 bits (193), Expect = 6e-15
Identities = 58/204 (28%), Positives = 97/204 (47%), Gaps = 24/204 (11%)
Query: 285 LEADKITKQYDD--RLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFIT 342
+E ++ Y + + + SL I GE + I+G G+GK+TLLKLL G KP G +
Sbjct: 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL 62
Query: 343 LGTNLKIATIDQK--REDIDPDKSLASYLTGSSGDSLMVRG---------ESRHVAGYIK 391
L I +D R +I + G+ D++ + + +AG +
Sbjct: 63 LD-GTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAG-VT 120
Query: 392 DFL-FHPDQAHSLM-----KHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFL 445
DF+ HP+ L + LSGG++ +AR L L++DEPT+ +D + + L
Sbjct: 121 DFVNKHPN-GLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERL 179
Query: 446 ERTITQLQG--TILIVSHDRDFLD 467
+ + QL G T++I++H LD
Sbjct: 180 KERLRQLLGDKTLIIITHRPSLLD 203
>gnl|CDD|33631 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 100 bits (250), Expect = 1e-21
Identities = 59/215 (27%), Positives = 101/215 (46%), Gaps = 23/215 (10%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLH 65
L L ++ + G ++L+DV L I+ E + L+G +G GKSTLL++ AG+ EP SG + +
Sbjct: 4 LELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILID 63
Query: 66 ---------SSSRLGYLEQNPDL-SHFS-----TISQYIDDTIKDTIEAPYSPYSLLKKF 110
+ + QN L H + + K I+ + K
Sbjct: 64 GRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKE--VAKLL 121
Query: 111 NLRE--QDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINS 168
L + LS GQ + VAL + L+ +P + +LDEP ++LD + M E+ K++
Sbjct: 122 GLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHE 181
Query: 169 AL----IFVSHDRRFLETLSTTTVWLDRGCLHHLD 199
L I+V+HD+ TL+ V ++ G + +
Sbjct: 182 RLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVG 216
Score = 87.6 bits (217), Expect = 9e-18
Identities = 51/198 (25%), Positives = 90/198 (45%), Gaps = 28/198 (14%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLG 344
LE + K + V+KD +L I GE + ++GP+G GK+TLL+++ G +P G I +
Sbjct: 4 LELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILID 63
Query: 345 TNLKIATIDQKREDIDPDK--------SLASYLTGSSGD----SLMVRGESRH-VAGYIK 391
+ D+ P+K + A Y + + L +RG + + +K
Sbjct: 64 --------GRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVK 115
Query: 392 DF---LFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERT 448
+ L + LSGG++ R +AR L + ++DEP ++LD + +
Sbjct: 116 EVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSE 175
Query: 449 ITQLQG----TILIVSHD 462
I +L T + V+HD
Sbjct: 176 IKKLHERLGTTTIYVTHD 193
>gnl|CDD|73022 cd03263, ABC_subfamily_A, The ABCA subfamily mediates the transport
of a variety of lipid compounds. Mutations of members
of ABCA subfamily are associated with human genetic
diseases, such as, familial high-density lipoprotein
(HDL) deficiency, neonatal surfactant deficiency,
degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR)
protein transports vitamin A derivatives in the outer
segments of photoreceptor cells, and therefore, performs
a crucial step in the visual cycle. The ABCA genes are
not present in yeast. However, evolutionary studies of
ABCA genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages..
Length = 220
Score = 100 bits (251), Expect = 1e-21
Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 17/195 (8%)
Query: 285 LEADKITKQY--DDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFIT 342
L+ +TK Y + V D SL ++ GE G++G NGAGKTT LK+LTG+++P G
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 343 LGTNLKIATIDQKREDID--P-DKSLASYLTGSSGDSL----MVRGESRHVAGYIKDFLF 395
+ R+ + P +L LT + L ++G + + L
Sbjct: 61 INGYSIRTDRKAARQSLGYCPQFDALFDELTVR--EHLRFYARLKGLPKSEIKEEVELLL 118
Query: 396 H----PDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQ 451
D+A+ + LSGG K + +A L + L++DEPT+ LD + + I +
Sbjct: 119 RVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILE 178
Query: 452 LQG--TILIVSHDRD 464
++ +I++ +H D
Sbjct: 179 VRKGRSIILTTHSMD 193
Score = 89.0 bits (221), Expect = 4e-18
Identities = 53/197 (26%), Positives = 84/197 (42%), Gaps = 30/197 (15%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSS----------RL 70
+ D+ L++ E L+G NG+GK+T LK+ G P SG +++ S L
Sbjct: 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSL 77
Query: 71 GYLEQNPDLSHFSTISQYI----------DDTIKDTIEAPYSPYSLLKKFNLREQ--DRI 118
GY Q L T+ +++ IK+ +E LL+ L ++ R
Sbjct: 78 GYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVEL------LLRVLGLTDKANKRA 131
Query: 119 ENLSVGQTRCVALMKMLISRPDILILDEPTNHLDF--RTIHWMEQELLKINSALIFVSHD 176
LS G R ++L LI P +L+LDEPT+ LD R W ++ ++I +H
Sbjct: 132 RTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHS 191
Query: 177 RRFLETLSTTTVWLDRG 193
E L + G
Sbjct: 192 MDEAEALCDRIAIMSDG 208
>gnl|CDD|73052 cd03293, ABC_NrtD_SsuB_transporters, NrtD and SsuB are the
ATP-binding subunits of the bacterial ABC-type nitrate
and sulfonate transport systems, respectively. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 220
Score = 99.8 bits (249), Expect = 2e-21
Identities = 62/191 (32%), Positives = 91/191 (47%), Gaps = 20/191 (10%)
Query: 6 LRLDHISATIGGID----LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGN 61
L + ++S T GG L+D+ LS++ E + LVG +G GKSTLL+I AG+ P SG
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 62 VFLHS------SSRLGYLEQNPDLSHFSTISQYI----DDTIKDTIEAPYSPYSLLKKFN 111
V + GY+ Q L + T+ + + EA LL+
Sbjct: 61 VLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVG 120
Query: 112 LR--EQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKI--- 166
L E LS G + VAL + L PD+L+LDEP + LD T +++ELL I
Sbjct: 121 LSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRE 180
Query: 167 -NSALIFVSHD 176
++ V+HD
Sbjct: 181 TGKTVLLVTHD 191
Score = 88.2 bits (219), Expect = 6e-18
Identities = 52/203 (25%), Positives = 92/203 (45%), Gaps = 33/203 (16%)
Query: 285 LEADKITKQYDDR----LVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGF 340
LE ++K Y ++D SL + GE + +VGP+G GK+TLL+++ G +P G
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 341 ITL------GTNLKIATIDQK---------REDIDPDKSLASYLTGSSGDSLMVRGESRH 385
+ + G + Q+ +++ +L L G + + E+R
Sbjct: 61 VLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNV----ALGLELQG------VPKAEARE 110
Query: 386 VAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFET---- 441
A + + + ++ LSGG + R +AR LA + L++DEP + LD T
Sbjct: 111 RAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQL 170
Query: 442 LDFLERTITQLQGTILIVSHDRD 464
+ L + T+L+V+HD D
Sbjct: 171 QEELLDIWRETGKTVLLVTHDID 193
>gnl|CDD|72987 cd03228, ABCC_MRP_Like, The MRP (Mutidrug Resistance Protein)-like
transporters are involved in drug, peptide, and lipid
export. They belong to the subfamily C of the
ATP-binding cassette (ABC) superfamily of transport
proteins. The ABCC subfamily contains transporters with
a diverse functional spectrum that includes ion
transport, cell surface receptor, and toxin secretion
activities. The MRP-like family, simlar to all ABC
proteins, have a common four-domain core structure
constituted by two membrane-spanning domains, each
composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 171
Score = 99.7 bits (249), Expect = 2e-21
Identities = 55/184 (29%), Positives = 86/184 (46%), Gaps = 38/184 (20%)
Query: 285 LEADKITKQYDDRL--VVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFIT 342
+E ++ Y R V+KD SL I GE + IVGP+G+GK+TLLKLL P G I
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 343 L-GTNLKIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYI--KDFLFHPDQ 399
+ G +L+ ++ R++I Y+ FLF
Sbjct: 61 IDGVDLRDLDLESLRKNI----------------------------AYVPQDPFLFSGTI 92
Query: 400 AHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG--TIL 457
++ LSGG++ R +AR L + LI+DE T+ LD ET + + L T++
Sbjct: 93 RENI---LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVI 149
Query: 458 IVSH 461
+++H
Sbjct: 150 VIAH 153
Score = 93.5 bits (233), Expect = 2e-19
Identities = 51/185 (27%), Positives = 84/185 (45%), Gaps = 47/185 (25%)
Query: 6 LRLDHISATIGGID--LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF 63
+ ++S + G +L+DV L+IKP E++ +VG +GSGKSTLLK+ + +P SG +
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 64 L-----------HSSSRLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNL 112
+ + Y+ Q+P L TI++ I
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFL---------FSGTIRENI--------------- 96
Query: 113 REQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKI--NSAL 170
LS GQ + +A+ + L+ P ILILDE T+ LD T + + L + +
Sbjct: 97 --------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTV 148
Query: 171 IFVSH 175
I ++H
Sbjct: 149 IVIAH 153
>gnl|CDD|33913 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 99.5 bits (248), Expect = 2e-21
Identities = 110/535 (20%), Positives = 199/535 (37%), Gaps = 123/535 (22%)
Query: 1 MSLPILRLDHISATI----GGIDLLQDVCLSIKPKERICLVGCNGSGKS----TLLKIAA 52
M++P+L + ++S G ++ ++ + I+ E + LVG +GSGKS ++L +
Sbjct: 2 MTMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLP 61
Query: 53 --GITEPQS-----GNVFLHSS---------SRLGYLEQNP--DLSHFSTISQYIDDTIK 94
P G L +S +++G + Q P L+ TI + + + ++
Sbjct: 62 SPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLR 121
Query: 95 -----DTIEAPYSPYSLLKKFNLREQDRIEN-----LSVGQTRCVALMKMLISRPDILIL 144
A LL+ + E ++ + LS GQ + V + L + PD+LI
Sbjct: 122 LHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIA 181
Query: 145 DEPTNHLDFRTIHWMEQELLK-----INSALIFVSHDRRFLETLSTTTVWLDRGCLHHLD 199
DEPT LD T+ +LLK + A++F++HD L + DR
Sbjct: 182 DEPTTALDV-TVQAQILDLLKELQAELGMAILFITHD------LGIVRKFADRVY----- 229
Query: 200 QGFAYFESWKKNILQQEQIRYHNLKKKNEAEKEWLRYGVTARRKRNVRRVKELHEIQKQL 259
++Q +I + A + H ++L
Sbjct: 230 ------------VMQHGEIVETGTTETLFAAPQ--------------------HPYTRKL 257
Query: 260 QEQKKSFHSTIQTHLQTTQSSGKLVLEADKITKQYDDR-----------LVVKDFSLRIH 308
+ ++LE + + + + V SL +
Sbjct: 258 LA------AEPSGDPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLR 311
Query: 309 YGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQ---KREDI-----D 360
G+ +G+VG +G+GK+TL L I G ++ + + R + D
Sbjct: 312 RGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQD 371
Query: 361 PDKSLASYLTGSS--GDSLMV------RGESRH-VAGYIKDFLFHPDQAHSLMKHLSGGE 411
P SL+ +T + L V E V +++ P + SGG+
Sbjct: 372 PYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQ 431
Query: 412 KMRAIVARVLAQPFNFLIMDEPTNDLDF----ETLDFLERTITQLQGTILIVSHD 462
+ R +AR L +++DEPT+ LD + LD L + + L +SHD
Sbjct: 432 RQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHD 486
Score = 63.7 bits (155), Expect = 1e-10
Identities = 62/213 (29%), Positives = 89/213 (41%), Gaps = 33/213 (15%)
Query: 289 KITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKT----TLLKLLT--GKIKPDCGFIT 342
++ VK S I GE + +VG +G+GK+ ++L LL P +
Sbjct: 15 AFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILF 74
Query: 343 LGTNLKIATIDQKR----EDI-----DPDKSLASYLTGSS--GDSLMV-RGESRHVA-GY 389
G +L A+ Q R I +P SL T + L + RG SR A
Sbjct: 75 DGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARAR 134
Query: 390 IKDFLFH---PDQAHSLMKH---LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFET-- 441
+ L P+ L + LSGG++ R ++A LA + LI DEPT LD
Sbjct: 135 ALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQA 194
Query: 442 --LDFLERTITQLQGTILIVSHD----RDFLDR 468
LD L+ +L IL ++HD R F DR
Sbjct: 195 QILDLLKELQAELGMAILFITHDLGIVRKFADR 227
Score = 51.0 bits (122), Expect = 1e-06
Identities = 54/223 (24%), Positives = 92/223 (41%), Gaps = 51/223 (22%)
Query: 7 RLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHS 66
+DH+ A + + L+++ + + LVG +GSGKSTL + Q F
Sbjct: 296 TVDHLRA-------VDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQ 348
Query: 67 S-------------SRLGYLEQNP--DLSHFSTISQYI-------------DDTIKDTIE 98
R+ + Q+P LS T+ Q I + + IE
Sbjct: 349 DIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIE 408
Query: 99 APYSPYSLLKKFNLREQDRIE---NLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRT 155
A L++ L R S GQ + +A+ + LI +P++++LDEPT+ LD R+
Sbjct: 409 A-------LEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALD-RS 460
Query: 156 IHWMEQELL-----KINSALIFVSHDRRFLETLSTTTVWLDRG 193
+ +LL K + +F+SHD + L + + G
Sbjct: 461 VQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDG 503
>gnl|CDD|32455 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 99.1 bits (247), Expect = 3e-21
Identities = 60/201 (29%), Positives = 99/201 (49%), Gaps = 25/201 (12%)
Query: 6 LRLDHISATIG--GIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF 63
+ +++S G +L+D+ L I P E++ +VG +GSGKSTLLK+ G+ +PQ G +
Sbjct: 472 IEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRIL 531
Query: 64 LHS-----------SSRLGYLEQNPDLSHFSTISQY----IDDTIKDTIEAPYSPY---- 104
L ++GY+ Q+P L S + T ++ IEA
Sbjct: 532 LDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEF 591
Query: 105 --SLLKKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQE 162
+L ++ + NLS GQ + +AL + L+S+P IL+LDE T+ LD T + Q
Sbjct: 592 IENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQN 651
Query: 163 LLKI--NSALIFVSHDRRFLE 181
LL+I +I ++H +
Sbjct: 652 LLQILQGRTVIIIAHRLSTIR 672
Score = 95.3 bits (237), Expect = 4e-20
Identities = 61/205 (29%), Positives = 98/205 (47%), Gaps = 18/205 (8%)
Query: 281 GKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGF 340
G++ E DD V++D SL I GE + IVG +G+GK+TLLKLL G KP G
Sbjct: 470 GEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGR 529
Query: 341 ITL-GTNLKIATIDQKREDI-----DP---DKSLASYLT-GSSGDSLMVRGESRHVAGYI 390
I L G +L + R + DP S+ + G+ + E+ +AG
Sbjct: 530 ILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAG-A 588
Query: 391 KDFLF-HPDQAHSLM----KHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFL 445
+F+ P + + +LSGG++ R +AR L L++DE T+ LD ET +
Sbjct: 589 HEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAII 648
Query: 446 ERTITQLQG--TILIVSHDRDFLDR 468
+ + Q+ T++I++H +
Sbjct: 649 LQNLLQILQGRTVIIIAHRLSTIRS 673
>gnl|CDD|72985 cd03226, ABC_cobalt_CbiO_domain2, Domain II of the ABC component of
a cobalt transport family found in bacteria, archaea,
and eukaryota. The transition metal cobalt is an
essential component of many enzymes and must be
transported into cells in appropriate amounts when
needed. The CbiMNQO family ABC transport system is
involved in cobalt transport in association with the
cobalamin (vitamin B12) biosynthetic pathways. Most
cobalt (Cbi) transport systems possess a separate CbiN
component, the cobalt-binding periplasmic protein, and
they are encoded by the conserved gene cluster cbiMNQO.
Both the CbiM and CbiQ proteins are integral cytoplasmic
membrane proteins, and the CbiO protein has the linker
peptide and the Walker A and B motifs commonly found in
the ATPase components of the ABC-type transport
systems..
Length = 205
Score = 99.2 bits (247), Expect = 3e-21
Identities = 60/204 (29%), Positives = 96/204 (47%), Gaps = 22/204 (10%)
Query: 286 EADKITKQY-DDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLG 344
+ I+ Y ++ D SL ++ GE I + G NGAGKTTL K+L G IK G I L
Sbjct: 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLN 60
Query: 345 TNLKIATIDQKREDI-----DPD-----KSLASYLTGSSGDSLMVRGESRHVAGYIKDF- 393
K ++R+ I D D S+ L + ++ V +KD
Sbjct: 61 G--KPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETV---LKDLD 115
Query: 394 LFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQ 453
L+ + H L LSGG+K R +A L + LI DEPT+ LD++ ++ + I +L
Sbjct: 116 LYALKERHPL--SLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELA 173
Query: 454 G---TILIVSHDRDFLDRTVTSTI 474
+++++HD +FL + +
Sbjct: 174 AQGKAVIVITHDYEFLAKVCDRVL 197
Score = 94.2 bits (234), Expect = 1e-19
Identities = 62/205 (30%), Positives = 107/205 (52%), Gaps = 21/205 (10%)
Query: 7 RLDHISATIG-GIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLH 65
R+++IS + G ++L D+ L + E I L G NG+GK+TL KI AG+ + SG++ L+
Sbjct: 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLN 60
Query: 66 SS--------SRLGYLEQNPDLSHFS-TISQYIDDTIKDTIEAPYSPYSLLKKFNL-REQ 115
+GY+ Q+ D F+ ++ + + +K+ ++LK +L +
Sbjct: 61 GKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALK 120
Query: 116 DRI-ENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQ------ELLKINS 168
+R +LS GQ + +A+ L+S D+LI DEPT+ LD++ ME+ EL
Sbjct: 121 ERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKN---MERVGELIRELAAQGK 177
Query: 169 ALIFVSHDRRFLETLSTTTVWLDRG 193
A+I ++HD FL + + L G
Sbjct: 178 AVIVITHDYEFLAKVCDRVLLLANG 202
>gnl|CDD|31315 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 98.9 bits (246), Expect = 3e-21
Identities = 61/212 (28%), Positives = 100/212 (47%), Gaps = 24/212 (11%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLH 65
+R++++ G L D+ L IK E + L+G +G+GKSTLL+I AG+ P +G + L+
Sbjct: 3 IRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLN 62
Query: 66 SSS------------RLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSP------YSLL 107
++G++ Q+ L T++ I +K E P LL
Sbjct: 63 GRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELL 122
Query: 108 KKFNLR--EQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLK 165
+ L LS GQ + VAL + L P +L+LDEP LD + + + L K
Sbjct: 123 RLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRK 182
Query: 166 INSAL----IFVSHDRRFLETLSTTTVWLDRG 193
++ L +FV+HD+ L+ V L++G
Sbjct: 183 LHDRLGVTTVFVTHDQEEALELADRVVVLNQG 214
Score = 80.8 bits (199), Expect = 1e-15
Identities = 58/209 (27%), Positives = 95/209 (45%), Gaps = 25/209 (11%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLG 344
+ + + K++ + D SL I GE + ++GP+GAGK+TLL+++ G PD G I L
Sbjct: 3 IRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLN 62
Query: 345 TNL-----KIATIDQKREDIDPDKSLASYLTGSSGDS--LMVRGES-------RHVAGYI 390
+ +A D+K + +L ++T + + L VR E V +
Sbjct: 63 GRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELL 122
Query: 391 KDF-LFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDF----ETLDFL 445
+ L + LSGG++ R +AR LA L++DEP LD E +L
Sbjct: 123 RLVQLEGLADRYPA--QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWL 180
Query: 446 ERTITQLQGTILIVSHD----RDFLDRTV 470
+ +L T + V+HD + DR V
Sbjct: 181 RKLHDRLGVTTVFVTHDQEEALELADRVV 209
>gnl|CDD|72978 cd03219, ABC_Mj1267_LivG_branched, The Mj1267/LivG ABC transporter
subfamily is involved in the transport of the
hydrophobic amino acids leucine, isoleucine and valine.
MJ1267 is a branched-chain amino acid transporter with
29% similarity to both the LivF and LivG components of
the E. coli branched-chain amino acid transporter.
MJ1267 contains an insertion from residues 114 to 123
characteristic of LivG (Leucine-Isoleucine-Valine)
homologs. The branched-chain amino acid transporter
from E. coli comprises a heterodimer of ABCs (LivF and
LivG), a heterodimer of six-helix TM domains (LivM and
LivH), and one of two alternative soluble periplasmic
substrate binding proteins (LivK or LivJ)..
Length = 236
Score = 98.2 bits (245), Expect = 5e-21
Identities = 55/206 (26%), Positives = 89/206 (43%), Gaps = 24/206 (11%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLG 344
LE +TK++ + + D S + GE G++GPNGAGKTTL L++G ++P G +
Sbjct: 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFD 60
Query: 345 ----TNLKIATIDQK-----------------REDIDPDKSLASYLTGSSGDSLMVRGES 383
T L I + E++ + + E+
Sbjct: 61 GEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREA 120
Query: 384 RHVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLD 443
R A + + + D A LS G++ R +AR LA L++DEP L+ E +
Sbjct: 121 RERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETE 180
Query: 444 FLERTITQLQG---TILIVSHDRDFL 466
L I +L+ T+L+V HD D +
Sbjct: 181 ELAELIRELRERGITVLLVEHDMDVV 206
Score = 87.4 bits (217), Expect = 1e-17
Identities = 56/221 (25%), Positives = 94/221 (42%), Gaps = 31/221 (14%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL- 64
L + ++ GG+ L DV S++P E L+G NG+GK+TL + +G P SG+V
Sbjct: 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFD 60
Query: 65 ---------HSSSRLGYLE--QN----PDLS---------HFSTISQYIDDTIKDTI-EA 99
H +RLG Q P+L+ T S + + EA
Sbjct: 61 GEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREA 120
Query: 100 PYSPYSLLKKFNL--REQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIH 157
LL++ L LS GQ R + + + L + P +L+LDEP L+
Sbjct: 121 RERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETE 180
Query: 158 WMEQELLKINS---ALIFVSHDRRFLETLSTTTVWLDRGCL 195
+ + + ++ ++ V HD + +L+ LD+G +
Sbjct: 181 ELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRV 221
>gnl|CDD|73016 cd03257, ABC_NikE_OppD_transporters, The ABC transporter subfamily
specific for the transport of dipeptides, oligopeptides
(OppD), and nickel (NikDE). The NikABCDE system of E.
coli belongs to this family and is composed of the
periplasmic binding protein NikA, two integral membrane
components (NikB and NikC), and two ATPase (NikD and
NikE). The NikABCDE transporter is synthesized under
anaerobic conditions to meet the increased demand for
nickel resulting from hydrogenase synthesis. The
molecular mechanism of nickel uptake in many bacteria
and most archaea is not known. Many other members of
this ABC family are also involved in the uptake of
dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF..
Length = 228
Score = 97.9 bits (244), Expect = 8e-21
Identities = 59/217 (27%), Positives = 94/217 (43%), Gaps = 30/217 (13%)
Query: 284 VLEADKITKQYDDRL----VVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCG 339
+LE ++ + + D S I GE +G+VG +G+GK+TL + + G +KP G
Sbjct: 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG 60
Query: 340 FITL-GTNLKIATIDQK---REDI-----DPDKSLASYLT--GSSGDSLMVRG------- 381
I G +L + + R++I DP SL +T + L + G
Sbjct: 61 SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEA 120
Query: 382 ESRHVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD--- 438
V + + + LSGG++ R +AR LA LI DEPT+ LD
Sbjct: 121 RKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSV 180
Query: 439 -FETLDFLERTITQLQGTILIVSHD----RDFLDRTV 470
+ LD L++ +L T+L ++HD DR
Sbjct: 181 QAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVA 217
Score = 93.7 bits (233), Expect = 1e-19
Identities = 57/230 (24%), Positives = 97/230 (42%), Gaps = 45/230 (19%)
Query: 5 ILRLDHISATI----GGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSG 60
+L + ++S + G + L DV SIK E + LVG +GSGKSTL + G+ +P SG
Sbjct: 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG 60
Query: 61 NVFLHS--------------SSRLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSL 106
++ + + Q+P S+++ + TI + I P +
Sbjct: 61 SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDP----MSSLNPRM--TIGEQIAEPLRIHGK 114
Query: 107 LKKFNLREQDRIEN-----------------LSVGQTRCVALMKMLISRPDILILDEPTN 149
L K R++ + LS GQ + VA+ + L P +LI DEPT+
Sbjct: 115 LSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTS 174
Query: 150 HLDFRTIHWMEQELLKI----NSALIFVSHDRRFLETLSTTTVWLDRGCL 195
LD + L K+ L+F++HD + ++ + G +
Sbjct: 175 ALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKI 224
>gnl|CDD|31325 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 97.5 bits (243), Expect = 9e-21
Identities = 58/204 (28%), Positives = 91/204 (44%), Gaps = 20/204 (9%)
Query: 277 TQSSGKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKP 336
S +LE I+K + + SL + GE ++G NGAGK+TL+K+L+G P
Sbjct: 1 MTMSTPPLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPP 60
Query: 337 DCGFITLG------------TNLKIATIDQKREDIDPDKSLAS--YLTG--SSGDSLMVR 380
D G I + IAT+ Q+ + P+ S+A +L + L+ R
Sbjct: 61 DSGEILIDGKPVAFSSPRDALAAGIATVHQELSLV-PNLSVAENIFLGREPTRRFGLIDR 119
Query: 381 GESRHVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFE 440
R A + L +L+ LS ++ +AR L+ LI+DEPT L +
Sbjct: 120 KAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVK 179
Query: 441 TLDFLERTITQL--QG-TILIVSH 461
+ L I +L QG I+ +SH
Sbjct: 180 ETERLFDLIRRLKAQGVAIIYISH 203
Score = 96.0 bits (239), Expect = 2e-20
Identities = 54/207 (26%), Positives = 92/207 (44%), Gaps = 39/207 (18%)
Query: 1 MSLPILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSG 60
+ P+L L IS + GG+ L V L+++P E L+G NG+GKSTL+KI +G+ P SG
Sbjct: 4 STPPLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSG 63
Query: 61 NVFLHSSSRLGYLEQNPDLSH---FSTISQYI----DDTIKDTI---EAPYSPYSLLKKF 110
+ + +P + +T+ Q + + ++ + I P + L+ +
Sbjct: 64 EILIDGKPVAFS---SPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRK 120
Query: 111 NLREQ---------------DRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLD--- 152
+R + + +LS+ Q + V + + L +LILDEPT L
Sbjct: 121 AMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKE 180
Query: 153 ----FRTIHWMEQELLKINSALIFVSH 175
F I L A+I++SH
Sbjct: 181 TERLFDLIR----RLKAQGVAIIYISH 203
Score = 75.9 bits (187), Expect = 3e-14
Identities = 59/209 (28%), Positives = 90/209 (43%), Gaps = 27/209 (12%)
Query: 277 TQSSGKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKP 336
+ G+ VLE ++ V+D S + GE +GI G GAG+T L + L G
Sbjct: 256 EEGIGEPVLEVRNLSG----GGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPA 311
Query: 337 DCGFITL-GTNLKIATI-------------DQKREDIDPDKSLASYLTGSSGDSLMVRG- 381
G I L G ++I + D+K E + D S+A +T +S RG
Sbjct: 312 SSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGL 371
Query: 382 -----ESRHVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTND 436
E YI+ + LSGG + + ++AR LA LI+DEPT
Sbjct: 372 IDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRG 431
Query: 437 LDFETLDFLERTITQL--QG-TILIVSHD 462
+D + R I +L +G IL++S +
Sbjct: 432 IDVGAKAEIYRLIRELAAEGKAILMISSE 460
Score = 60.1 bits (146), Expect = 2e-09
Identities = 43/209 (20%), Positives = 81/209 (38%), Gaps = 46/209 (22%)
Query: 4 PILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF 63
P+L + ++S ++DV +++ E + + G G+G++ L + G SG +
Sbjct: 262 PVLEVRNLSGG----GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEIL 317
Query: 64 LH------SSSR------LGYL---------------EQN---PDLSHFSTISQYIDDTI 93
L S R + Y+ +N L FS
Sbjct: 318 LDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKE 377
Query: 94 KDTIEAPYSPYSLLKKFNLR---EQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNH 150
+ E +++ ++ + I LS G + V L + L + P +LILDEPT
Sbjct: 378 RALAER------YIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRG 431
Query: 151 LDF---RTIHWMEQELLKINSALIFVSHD 176
+D I+ + +EL A++ +S +
Sbjct: 432 IDVGAKAEIYRLIRELAAEGKAILMISSE 460
>gnl|CDD|34593 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 96.4 bits (240), Expect = 2e-20
Identities = 52/210 (24%), Positives = 98/210 (46%), Gaps = 20/210 (9%)
Query: 271 QTHLQTTQSSGKLVLEADKITKQYDD-RLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKL 329
+ + + + ++ +Y D + + D +L I G+ +VG +GAGK+TLL L
Sbjct: 307 SGEKAEVANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNL 366
Query: 330 LTGKIKPDCGFITL-GTNLKIATIDQKREDID--PDKSLASYLTGSSGDSLMVRGESRHV 386
L G + P G I + G +L+ + + R+ I G+ +++++
Sbjct: 367 LLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPY--LFAGTIRENILLARPDASD 424
Query: 387 A--------GYIKDFLFHPDQAHSLM----KHLSGGEKMRAIVARVLAQPFNFLIMDEPT 434
+ +F+ PD +++ LSGG+ R +AR L P + L++DEPT
Sbjct: 425 EEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPT 484
Query: 435 NDLDFETLDFLERTITQL--QGTILIVSHD 462
LD ET + + + +L Q T+L+++H
Sbjct: 485 AHLDAETEQIILQALQELAKQKTVLVITHR 514
Score = 92.6 bits (230), Expect = 3e-19
Identities = 52/194 (26%), Positives = 86/194 (44%), Gaps = 23/194 (11%)
Query: 6 LRLDHISATIG-GIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL 64
+ L+++S G L D+ L+IK + LVG +G+GKSTLL + G P G + +
Sbjct: 321 ISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRV 380
Query: 65 HSSSR-----------LGYLEQNPDLSHFS---TISQYIDDTIKDTIEAPYSPYSLLKKF 110
+ + ++ QNP L + I D + I A LL+
Sbjct: 381 NGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFV 440
Query: 111 NLREQ------DRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELL 164
+ + LS GQ + +AL + L+S +L+LDEPT HLD T + Q L
Sbjct: 441 PKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQ 500
Query: 165 KI--NSALIFVSHD 176
++ ++ ++H
Sbjct: 501 ELAKQKTVLVITHR 514
>gnl|CDD|34235 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 94.9 bits (236), Expect = 7e-20
Identities = 63/212 (29%), Positives = 108/212 (50%), Gaps = 18/212 (8%)
Query: 284 VLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL 343
++ + ++K Y ++V+ D SL I G I+GPNGAGK+TLL +++ +K D G IT+
Sbjct: 1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITI 60
Query: 344 G----TNLKIATIDQKREDIDPDKSLASYLTGSS----GDSLMVRG-----ESRHVAGYI 390
T+ + +K + + + S LT G +G + R + I
Sbjct: 61 DGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAI 120
Query: 391 KDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDF----ETLDFLE 446
++L D + + LSGG++ RA +A VLAQ +++++DEP N+LD + + L
Sbjct: 121 -EYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILR 179
Query: 447 RTITQLQGTILIVSHDRDFLDRTVTSTIAAQN 478
R +L TI++V HD +F +A +N
Sbjct: 180 RLADELGKTIVVVLHDINFASCYSDHIVALKN 211
Score = 60.2 bits (146), Expect = 2e-09
Identities = 53/215 (24%), Positives = 97/215 (45%), Gaps = 29/215 (13%)
Query: 5 ILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL 64
++ ++++S + G +L DV L I ++G NG+GKSTLL + + + + SG + +
Sbjct: 1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITI 60
Query: 65 HSSSRLGYLEQNPDLSH-FSTISQYIDDTIKDTIEA-------PYSPYSL---------- 106
+ +L+ S + Q + T+ PYS L
Sbjct: 61 DGLELTSTPSK--ELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINE 118
Query: 107 -LKKFNLRE-QDR-IENLSVGQTRCVALMKMLISR-PDILILDEPTNHLDFRTIHWMEQE 162
++ +L + DR ++ LS GQ R A + M++++ D ++LDEP N+LD + + +
Sbjct: 119 AIEYLHLEDLSDRYLDELSGGQ-RQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKI 177
Query: 163 LLKI----NSALIFVSHDRRFLETLSTTTVWLDRG 193
L ++ ++ V HD F S V L G
Sbjct: 178 LRRLADELGKTIVVVLHDINFASCYSDHIVALKNG 212
>gnl|CDD|31332 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 94.1 bits (234), Expect = 1e-19
Identities = 62/201 (30%), Positives = 95/201 (47%), Gaps = 17/201 (8%)
Query: 284 VLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL 343
L A+ + K Y R VV D SL ++ GE +G++GPNGAGKTT ++ G ++PD G I L
Sbjct: 4 TLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILL 63
Query: 344 -GTNLKIATIDQK-REDIDPDKSLASYLTG-SSGDSLMVRGESRHVAGYIKDFLFHPDQ- 399
++ + ++ R I AS + D++M E R + D
Sbjct: 64 DDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDAL 123
Query: 400 ---------AHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTIT 450
S LSGGE+ R +AR LA F+++DEP +D + ++R I
Sbjct: 124 LEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIK 183
Query: 451 QLQGT---ILIVSHD-RDFLD 467
L+ +LI H+ R+ LD
Sbjct: 184 HLKDRGIGVLITDHNVRETLD 204
Score = 71.0 bits (174), Expect = 9e-13
Identities = 57/245 (23%), Positives = 100/245 (40%), Gaps = 31/245 (12%)
Query: 2 SLPILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGN 61
+ L ++++ + ++ DV L + E + L+G NG+GK+T + G+ P SG
Sbjct: 1 DMSTLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGK 60
Query: 62 VFL----------HSSSRLG--YLEQNPDLSHFSTISQYID------DTIKDTIEAPYSP 103
+ L H +RLG YL Q + T+ I + E
Sbjct: 61 ILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEEL 120
Query: 104 YSLLKKFNLR--EQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLD---FRTIHW 158
+LL++F++ + +LS G+ R V + + L + P ++LDEP +D I
Sbjct: 121 DALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQR 180
Query: 159 MEQELLKINSALIFVSHDRRFLETLSTTTVWLDRGCLHHLDQGFAYFESWKKNILQQEQI 218
+ + L ++ H+ R ETL DR + G E + I+ E +
Sbjct: 181 IIKHLKDRGIGVLITDHNVR--ETLDIC----DRAYIIS--DGKVLAEGSPEEIVNNEDV 232
Query: 219 RYHNL 223
R L
Sbjct: 233 RRVYL 237
>gnl|CDD|31331 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 93.7 bits (233), Expect = 1e-19
Identities = 54/204 (26%), Positives = 96/204 (47%), Gaps = 30/204 (14%)
Query: 5 ILRLDHISATIGG----IDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSG 60
++ L ++S G ++ L+DV L I+ E + +VG +GSGKSTLL + G+ +P SG
Sbjct: 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG 60
Query: 61 NVFLHSS---------------SRLGYLEQNPDLSHFSTISQ-------YIDDTIKDTIE 98
V ++ ++G++ QN +L T+ + +
Sbjct: 61 EVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKR 120
Query: 99 APYSPYSLLKKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHW 158
A +L + + + LS GQ + VA+ + LI+ P I++ DEPT +LD +T
Sbjct: 121 AAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKE 180
Query: 159 MEQELLKIN----SALIFVSHDRR 178
+ + L ++N +I V+HD
Sbjct: 181 VLELLRELNKERGKTIIMVTHDPE 204
Score = 91.0 bits (226), Expect = 1e-18
Identities = 62/214 (28%), Positives = 103/214 (48%), Gaps = 26/214 (12%)
Query: 284 VLEADKITKQY----DDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCG 339
++E ++K Y + +KD +L I GE + IVGP+G+GK+TLL LL G KP G
Sbjct: 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG 60
Query: 340 FITL-GTNLKIATIDQ----KREDID---PDKSLASYLTGSS--GDSLMVRGESRHVAG- 388
+ + G +L + + +R+ I + +L LT L++ G+S
Sbjct: 61 EVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKR 120
Query: 389 YIKDFLFHPDQAHSLMKH----LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFET--- 441
++ L L+K LSGG++ R +AR L ++ DEPT +LD +T
Sbjct: 121 AAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKE 180
Query: 442 -LDFLERTITQLQGTILIVSHDRD---FLDRTVT 471
L+ L + TI++V+HD + + DR +
Sbjct: 181 VLELLRELNKERGKTIIMVTHDPELAKYADRVIE 214
>gnl|CDD|73059 cd03300, ABC_PotA_N, PotA is an ABC-type transporter and the ATPase
component of the spermidine/putrescine-preferential
uptake system consisting of PotA, -B, -C, and -D. PotA
has two domains with the N-terminal domain containing
the ATPase activity and the residues required for
homodimerization with PotA and heterdimerization with
PotB. ABC transporters are a large family of proteins
involved in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 232
Score = 93.7 bits (233), Expect = 1e-19
Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 19/207 (9%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLH 65
+ L+++S GG L V L IK E L+G +G GK+TLL++ AG P SG + L
Sbjct: 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLD 60
Query: 66 SSS---------RLGYLEQN----PDLSHFSTIS--QYIDDTIKDTIEAPYSPYSLLKKF 110
+ + QN P L+ F I+ + K I+ + L +
Sbjct: 61 GKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQL 120
Query: 111 NLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINSAL 170
+ LS GQ + VA+ + L++ P +L+LDEP LD + M+ EL ++ L
Sbjct: 121 EGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKEL 180
Query: 171 ----IFVSHDRRFLETLSTTTVWLDRG 193
+FV+HD+ T+S +++G
Sbjct: 181 GITFVFVTHDQEEALTMSDRIAVMNKG 207
Score = 80.6 bits (199), Expect = 1e-15
Identities = 53/198 (26%), Positives = 87/198 (43%), Gaps = 24/198 (12%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLG 344
+E + ++K Y + + SL I GE ++GP+G GKTTLL+L+ G P G I L
Sbjct: 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLD 60
Query: 345 ----TNL-----KIATIDQKRE-----DIDPDKSLASYLTGSSGDSLMVRGESRHVAGYI 390
TNL + T+ Q + + + L + VA +
Sbjct: 61 GKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEI-----KERVAEAL 115
Query: 391 KDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTIT 450
D + A+ LSGG++ R +AR L L++DEP LD + ++ +
Sbjct: 116 -DLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELK 174
Query: 451 QLQG----TILIVSHDRD 464
+LQ T + V+HD++
Sbjct: 175 RLQKELGITFVFVTHDQE 192
>gnl|CDD|30760 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 93.3 bits (232), Expect = 2e-19
Identities = 59/212 (27%), Positives = 95/212 (44%), Gaps = 27/212 (12%)
Query: 282 KLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFI 341
+LE ++K++ V D SL + GE +G++GPNGAGKTTL L+TG KP G +
Sbjct: 2 TPLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTV 61
Query: 342 TL-GTNL------KIATIDQKR--EDIDPDKSL--------ASYLTGSSGDSLMVRG--- 381
G ++ +IA + R + L ++ L
Sbjct: 62 IFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARK 121
Query: 382 ---ESRHVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD 438
E+R A + +F+ + A +LS G++ R +AR LA L++DEP L+
Sbjct: 122 EEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLN 181
Query: 439 FETLDFLERTITQLQG----TILIVSHDRDFL 466
E + L I +L+ TIL++ HD +
Sbjct: 182 PEETEELAELIRELRDRGGVTILLIEHDMKLV 213
Score = 83.7 bits (207), Expect = 1e-16
Identities = 56/224 (25%), Positives = 95/224 (42%), Gaps = 34/224 (15%)
Query: 4 PILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF 63
P+L + +S GG+ + DV L ++P E + L+G NG+GK+TL + G +P SG V
Sbjct: 3 PLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVI 62
Query: 64 L----------HSSSRLGYLE--QNPDLSHFSTISQYI----------------DDTIKD 95
H +RLG Q L T+ + + K+
Sbjct: 63 FRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKE 122
Query: 96 TIEAPYSPYSLLKKFNL--REQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDF 153
EA LL+ L NLS GQ R + + + L ++P +L+LDEP L+
Sbjct: 123 EREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNP 182
Query: 154 RTIHWMEQELLKINS----ALIFVSHDRRFLETLSTTTVWLDRG 193
+ + + ++ ++ + HD + + L+ V L+ G
Sbjct: 183 EETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYG 226
>gnl|CDD|73015 cd03256, ABC_PhnC_transporter, ABC-type phosphate/phosphonate
transport system. Phosphonates are a class of
organophosphorus compounds characterized by a chemically
stable carbon-to-phosphorus (C-P) bond. Phosphonates
are widespread among naturally occurring compounds in
all kingdoms of wildlife, but only procaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 241
Score = 93.3 bits (232), Expect = 2e-19
Identities = 61/216 (28%), Positives = 105/216 (48%), Gaps = 30/216 (13%)
Query: 285 LEADKITKQY-DDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL 343
+E + ++K Y + + +KD SL I+ GE + ++GP+GAGK+TLL+ L G ++P G + +
Sbjct: 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI 60
Query: 344 -GTNL-------------KIATIDQKREDIDPDKSLASYLTGSSGDSLMVRG-------E 382
GT++ +I I Q+ I+ L + L+G G R E
Sbjct: 61 DGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKE 120
Query: 383 SRHVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFET- 441
+ A + + D+A+ LSGG++ R +AR L Q ++ DEP LD +
Sbjct: 121 EKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASS 180
Query: 442 ---LDFLERTITQLQGTILIVSHD----RDFLDRTV 470
+D L+R + T+++ H R++ DR V
Sbjct: 181 RQVMDLLKRINREEGITVIVSLHQVDLAREYADRIV 216
Score = 77.9 bits (192), Expect = 8e-15
Identities = 48/191 (25%), Positives = 91/191 (47%), Gaps = 29/191 (15%)
Query: 6 LRLDHISATIG-GIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL 64
+ ++++S T G L+DV LSI P E + L+G +G+GKSTLL+ G+ EP SG+V +
Sbjct: 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI 60
Query: 65 H--------------SSSRLGYLEQNPDLSHFSTISQYI------DDTIKDTIEAPYSP- 103
++G + Q +L ++ + + + ++ +
Sbjct: 61 DGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKE 120
Query: 104 -----YSLLKKFNLREQ--DRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTI 156
+ L++ L ++ R + LS GQ + VA+ + L+ +P +++ DEP LD +
Sbjct: 121 EKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASS 180
Query: 157 HWMEQELLKIN 167
+ L +IN
Sbjct: 181 RQVMDLLKRIN 191
>gnl|CDD|73014 cd03255, ABC_MJ0796_Lo1CDE_FtsE, This family is comprised of MJ0796
ATP-binding cassette, macrolide-specific ABC-type efflux
carrier (MacAB), and proteins involved in cell division
(FtsE), and release of liporoteins from the cytoplasmic
membrane (LolCDE). They are clustered together
phylogenetically. MacAB is an exporter that confers
resistance to macrolides, while the LolCDE system is not
a transporter at all. An FtsE null mutants showed
filamentous growth and appeared viable on high salt
medium only, indicating a role for FtsE in cell division
and/or salt transport. The LolCDE complex catalyses the
release of lipoproteins from the cytoplasmic membrane
prior to their targeting to the outer membrane..
Length = 218
Score = 92.9 bits (231), Expect = 2e-19
Identities = 58/212 (27%), Positives = 95/212 (44%), Gaps = 25/212 (11%)
Query: 285 LEADKITKQYDD----RLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGF 340
+E ++K Y +K SL I GE + IVGP+G+GK+TLL +L G +P G
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 341 ITLG----TNLKIATIDQKRED----IDPDKSLASYLTGSSGDSL------MVRGESRHV 386
+ + + L + R + +L LT L + + E R
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRER 120
Query: 387 AGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFET----L 442
A + + + D+ + LSGG++ R +AR LA ++ DEPT +LD ET +
Sbjct: 121 AEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVM 180
Query: 443 DFLERTITQLQGTILIVSHDRDFL---DRTVT 471
+ L + TI++V+HD + DR +
Sbjct: 181 ELLRELNKEAGTTIVVVTHDPELAEYADRIIE 212
Score = 88.6 bits (220), Expect = 4e-18
Identities = 61/217 (28%), Positives = 98/217 (45%), Gaps = 30/217 (13%)
Query: 6 LRLDHISATIGG----IDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGN 61
+ L ++S T GG + L+ V LSI+ E + +VG +GSGKSTLL I G+ P SG
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 62 VFLHSSS---------------RLGYLEQN----PDLSHFSTISQYIDDTIKDTIEAPYS 102
V + + +G++ Q+ PDL+ + + E
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRER 120
Query: 103 PYSLLKKFNL--REQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWME 160
LL++ L R LS GQ + VA+ + L + P I++ DEPT +LD T +
Sbjct: 121 AEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVM 180
Query: 161 QELLKINS----ALIFVSHDRRFLETLSTTTVWLDRG 193
+ L ++N ++ V+HD E + + L G
Sbjct: 181 ELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDG 216
>gnl|CDD|31321 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 92.2 bits (229), Expect = 3e-19
Identities = 57/204 (27%), Positives = 82/204 (40%), Gaps = 20/204 (9%)
Query: 285 LEADKITKQYDDR----LVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGF 340
L ++ Y + + SL I GE +GIVG +G+GK+TL +LL G KP G
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 341 ITLGTN--LKIATIDQKREDI-----DPDKSLASYLT--GSSGDSLMVRGES---RHVAG 388
I L + DP SL T + L G S + +A
Sbjct: 64 ILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAE 123
Query: 389 YIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDF----ETLDF 444
+ P LSGG++ R +AR L LI+DEPT+ LD + L+
Sbjct: 124 LLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNL 183
Query: 445 LERTITQLQGTILIVSHDRDFLDR 468
L + T L +SHD ++
Sbjct: 184 LLELKKERGLTYLFISHDLALVEH 207
Score = 88.4 bits (219), Expect = 5e-18
Identities = 58/220 (26%), Positives = 95/220 (43%), Gaps = 33/220 (15%)
Query: 4 PILRLDHISATIGG----IDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQS 59
+L + ++S GG L +V L I+ E + +VG +GSGKSTL ++ AG+ +P S
Sbjct: 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSS 61
Query: 60 GNVFLHSSSRLGYLEQNPDLSHFSTISQYIDD---------TIKDTIEAPYSPYS----- 105
G++ L + + + + D T+ + P P+
Sbjct: 62 GSILLDGKP---LAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQ 118
Query: 106 -----LLKKFNLRE---QDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIH 157
LL + L R LS GQ + +A+ + LI P +LILDEPT+ LD
Sbjct: 119 QRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQA 178
Query: 158 WMEQELLKI----NSALIFVSHDRRFLETLSTTTVWLDRG 193
+ LL++ +F+SHD +E + +D G
Sbjct: 179 QILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNG 218
>gnl|CDD|73020 cd03261, ABC_Org_Solvent_Resistant, ABC (ATP-binding cassette)
transport system involved in resistant to organic
solvents; ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 235
Score = 91.7 bits (228), Expect = 5e-19
Identities = 56/208 (26%), Positives = 88/208 (42%), Gaps = 26/208 (12%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL- 343
+E +TK + R V+K L + GE + I+GP+G+GK+TLL+L+ G ++PD G + +
Sbjct: 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLID 60
Query: 344 GTNLKIATIDQKREDIDPDKSLASYLTGSSG--DSLMV---------------RGESRHV 386
G ++ ++ + L S DSL V E R +
Sbjct: 61 GEDI----SGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREI 116
Query: 387 AGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLE 446
+ + LSGG K R +AR LA L+ DEPT LD ++
Sbjct: 117 VLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVID 176
Query: 447 RTITQLQG----TILIVSHDRDFLDRTV 470
I L+ T ++V+HD D
Sbjct: 177 DLIRSLKKELGLTSIMVTHDLDTAFAIA 204
Score = 77.8 bits (192), Expect = 8e-15
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 25/196 (12%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL- 64
+ L ++ + GG +L+ V L ++ E + ++G +GSGKSTLL++ G+ P SG V +
Sbjct: 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLID 60
Query: 65 -HSSSRLGYLEQNPDLSHFSTISQ----YIDDTIKDTIEAPYSPYSLLKKFNLREQDRI- 118
S L E + Q + T+ + + P ++ L + +RE
Sbjct: 61 GEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEK 120
Query: 119 --------------ENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELL 164
LS G + VAL + L P++L+ DEPT LD ++ +
Sbjct: 121 LEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIR 180
Query: 165 KINSAL----IFVSHD 176
+ L I V+HD
Sbjct: 181 SLKKELGLTSIMVTHD 196
>gnl|CDD|72979 cd03220, ABC_KpsT_Wzt, ABC_KpsT_Wzt The KpsT/Wzt ABC transporter
subfamily is involved in extracellular polysaccharide
export. Among the variety of membrane-linked or
extracellular polysaccharides excreted by bacteria, only
capsular polysaccharides, lipopolysaccharides, and
teichoic acids have been shown to be exported by ABC
transporters. A typical system is made of a conserved
integral membrane and an ABC. In addition to these
proteins, capsular polysaccharide exporter systems
require two 'accessory' proteins to perform their
function: a periplasmic (E.coli) or a lipid-anchored
outer membrane protein called OMA (Neisseria
meningitidis and Haemophilus influenzae) and a
cytoplasmic membrane protein MPA2..
Length = 224
Score = 91.0 bits (226), Expect = 9e-19
Identities = 54/205 (26%), Positives = 83/205 (40%), Gaps = 17/205 (8%)
Query: 273 HLQTTQSSGKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTG 332
SS L + + +KD S + GE IG++G NGAGK+TLL+LL G
Sbjct: 11 PTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAG 70
Query: 333 KIKPDCGFITLGTNLKIATIDQKREDIDPDKSLASYLTGSSGDSL------MVRGESRHV 386
PD G +T +++++ + LTG L + R E
Sbjct: 71 IYPPDSGTVT--VRGRVSSL------LGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEK 122
Query: 387 AGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLE 446
I +F D +K S G K R A A + L++DE D + +
Sbjct: 123 IDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQ 182
Query: 447 RTITQLQ---GTILIVSHDRDFLDR 468
R + +L T+++VSHD + R
Sbjct: 183 RRLRELLKQGKTVILVSHDPSSIKR 207
Score = 84.1 bits (208), Expect = 1e-16
Identities = 62/198 (31%), Positives = 89/198 (44%), Gaps = 30/198 (15%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHS--SSRLGY-LEQNP 77
L+DV + ERI L+G NG+GKSTLL++ AGI P SG V + SS LG NP
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNP 97
Query: 78 DLSHFSTI----------SQYIDDTIKDTIEAPYSPYSLLKKFNLREQDRIENLSVGQTR 127
+L+ I + ID+ I + IE +S L F ++ S G
Sbjct: 98 ELTGRENIYLNGRLLGLSRKEIDEKIDEIIE-----FSELGDF---IDLPVKTYSSGMKA 149
Query: 128 CVALMKMLISRPDILILDEPTNHLDFRTIHWME------QELLKINSALIFVSHDRRFLE 181
+A PDIL++DE D + E +ELLK +I VSHD ++
Sbjct: 150 RLAFAIATALEPDILLIDEVLAVGD---AAFQEKCQRRLRELLKQGKTVILVSHDPSSIK 206
Query: 182 TLSTTTVWLDRGCLHHLD 199
L + L++G +
Sbjct: 207 RLCDRALVLEKGKIRFDG 224
>gnl|CDD|34224 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 91.1 bits (226), Expect = 9e-19
Identities = 70/295 (23%), Positives = 114/295 (38%), Gaps = 50/295 (16%)
Query: 300 VKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKREDI 359
V+D S I GE +G +G NGAGK+T LK+LTG + P G + ++ D R
Sbjct: 40 VQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKV------RVNGKDPFRRRE 93
Query: 360 DPDKSLASYLTGSSG--------DSLMVRGESRHVAGY--------------IKDFLFHP 397
+ +S+ + DSL V + ++ FL P
Sbjct: 94 EYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWP 153
Query: 398 DQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFET----LDFLERTITQLQ 453
++ LS G++MRA +A L P L +DEPT LD +FL+ + Q
Sbjct: 154 ------VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQ 207
Query: 454 GTILIVSHDRDFLDRTVTSTI---AAQNIED-PNGYWIKYAGGYSDMLVQQKKSHPTPQK 509
T+L+ +H D + + Q + D + G Y + V+ K++
Sbjct: 208 ATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEFSVELKQAKSLS-- 265
Query: 510 KNPPAQSLQEETVKKEKKQKRKNRLS-YSQKLLLERLPQEIHKIQLKITEKEQQI 563
Q V E+ KN +S ++ +L E L + + E +
Sbjct: 266 -----QLALLGDVTIEEGLNIKNDVSREESADIIAKLLAEFEVRDLTVEDPEIED 315
Score = 70.3 bits (172), Expect = 2e-12
Identities = 48/202 (23%), Positives = 81/202 (40%), Gaps = 31/202 (15%)
Query: 18 IDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGYLEQNP 77
I+ +QD+ I E + +G NG+GKST LK+ G+ P SG V G
Sbjct: 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKV-----RVNGKDPFRR 91
Query: 78 DLSHFSTIS----QYI----DDTIKDTIEAPYSPYSL-LKKFNLRE-------------Q 115
+ +I Q + D D++E Y + +F R +
Sbjct: 92 REEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLK 151
Query: 116 DRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLD----FRTIHWMEQELLKINSALI 171
+ LS+GQ L L+ P +L LDEPT LD ++++ + + ++
Sbjct: 152 WPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVL 211
Query: 172 FVSHDRRFLETLSTTTVWLDRG 193
+H + TL + +D+G
Sbjct: 212 LTTHIFDDIATLCDRVLLIDQG 233
>gnl|CDD|31324 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 90.6 bits (225), Expect = 1e-18
Identities = 55/214 (25%), Positives = 102/214 (47%), Gaps = 21/214 (9%)
Query: 277 TQSSGKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKP 336
+S + ++E +TK + DR+++ L + GE + I+G +G+GK+TLL+L+ G ++P
Sbjct: 1 MSASPEPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP 60
Query: 337 DCGFITL-GTNLKIATIDQKREDIDP-------DKSLASYLTGSSGDSLMVRGESRHVAG 388
D G I + G ++ +++ +I +L S LT + +R ++
Sbjct: 61 DKGEILIDGEDIP-QLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPES 119
Query: 389 YIKDFL--------FHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFE 440
I++ + A LSGG + R +AR +A L +DEPT+ LD
Sbjct: 120 LIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPI 179
Query: 441 TLDFLERTITQLQ----GTILIVSHDRDFLDRTV 470
+ ++ I +L T+++V+HD D L
Sbjct: 180 SAGVIDELIRELNDALGLTVIMVTHDLDSLLTIA 213
Score = 81.0 bits (200), Expect = 9e-16
Identities = 53/207 (25%), Positives = 96/207 (46%), Gaps = 42/207 (20%)
Query: 4 PILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF 63
P++ + ++ + G +L V L + E + ++G +GSGKSTLL++ G+ P G +
Sbjct: 7 PLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEIL 66
Query: 64 LHSSS--------------RLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKK 109
+ R+G L Q L FS++ T+ + + P ++ L +
Sbjct: 67 IDGEDIPQLSEEELYEIRKRMGVLFQQGAL--FSSL------TVFENVAFPLREHTKLPE 118
Query: 110 FNLRE--QDRIE--------------NLSVGQTRCVALMKMLISRPDILILDEPTNHLDF 153
+RE ++E LS G + VAL + + P++L LDEPT+ LD
Sbjct: 119 SLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDP 178
Query: 154 RTIHWMEQELLKINSAL----IFVSHD 176
+ +++ + ++N AL I V+HD
Sbjct: 179 ISAGVIDELIRELNDALGLTVIMVTHD 205
>gnl|CDD|72983 cd03224, ABC_TM1139_LivF_branched, LivF (TM1139) is part of the
LIV-I bacterial ABC-type two-component transport system
that imports neutral, branched-chain amino acids. The
E. coli branched-chain amino acid transporter comprises
a heterodimer of ABC transporters (LivF and LivG), a
heterodimer of six-helix TM domains (LivM and LivH), and
one of two alternative soluble periplasmic substrate
binding proteins (LivK or LivJ). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules..
Length = 222
Score = 90.5 bits (225), Expect = 1e-18
Identities = 52/211 (24%), Positives = 101/211 (47%), Gaps = 26/211 (12%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL- 64
L +++++A G +L V L++ E + L+G NG+GK+TLLK G+ P+SG++
Sbjct: 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFD 60
Query: 65 ---------HSSSRLG--YLEQNPDLSHFSTISQYI--------DDTIKDTIEAPYSPYS 105
H +R G Y+ + + T+ + + K +E Y +
Sbjct: 61 GRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFP 120
Query: 106 LLKKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLK 165
LK+ R + LS G+ + +A+ + L+SRP +L+LDEP+ L + + + + + +
Sbjct: 121 RLKE---RRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRE 177
Query: 166 INS---ALIFVSHDRRFLETLSTTTVWLDRG 193
+ ++ V + RF ++ L+RG
Sbjct: 178 LRDEGVTILLVEQNARFALEIADRAYVLERG 208
Score = 71.6 bits (176), Expect = 5e-13
Identities = 58/200 (29%), Positives = 91/200 (45%), Gaps = 25/200 (12%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLG 344
LE + + Y ++ SL + GE + ++G NGAGKTTLLK + G + P G I
Sbjct: 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFD 60
Query: 345 ----TNLK--------IATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKD 392
T L I + + R I P+ ++ L G R + + + +
Sbjct: 61 GRDITGLPPHERARAGIGYVPEGRR-IFPELTVEENLL--LGAYARRRAKRKARLERVYE 117
Query: 393 FLFHP---DQAHSLMKHLSGGEK-MRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERT 448
LF P ++ L LSGGE+ M AI AR L L++DEP+ L + ++ +
Sbjct: 118 -LF-PRLKERRKQLAGTLSGGEQQMLAI-ARALMSRPKLLLLDEPSEGLAPKIVEEIFEA 174
Query: 449 ITQLQG---TILIVSHDRDF 465
I +L+ TIL+V + F
Sbjct: 175 IRELRDEGVTILLVEQNARF 194
>gnl|CDD|73021 cd03262, ABC_HisP_GlnQ_permeases, HisP and GlnQ are the ATP-binding
components of the bacterial periplasmic histidine and
glutamine permeases, repectively. Histidine permease is
a multisubunit complex containing the HisQ and HisM
integral membrane subunits and two copies of HisP. HisP
has properties intermediate between those of integral
and peripheral membrane proteins and is accessible from
both sides of the membrane, presumably by its
interaction with HisQ and HisM. The two HisP subunits
form a homodimer within the complex. The domain
structure of the amino acid uptake systems is typical
for prokaryote extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein..
Length = 213
Score = 90.2 bits (224), Expect = 1e-18
Identities = 57/200 (28%), Positives = 99/200 (49%), Gaps = 22/200 (11%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL- 343
+E + K + D V+K L + GE + I+GP+G+GK+TLL+ + +PD G I +
Sbjct: 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIID 60
Query: 344 GTNL-----KIATIDQK------REDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKD 392
G L I + QK + ++ P ++ +T + + V+G S+ A
Sbjct: 61 GLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLA---PIKVKGMSKAEAEERAL 117
Query: 393 FLFH----PDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERT 448
L D+A + LSGG++ R +AR LA ++ DEPT+ LD E + +
Sbjct: 118 ELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDV 177
Query: 449 ITQL--QG-TILIVSHDRDF 465
+ L +G T+++V+H+ F
Sbjct: 178 MKDLAEEGMTMVVVTHEMGF 197
Score = 78.2 bits (193), Expect = 5e-15
Identities = 50/211 (23%), Positives = 97/211 (45%), Gaps = 23/211 (10%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLH 65
+ + ++ + G +L+ + L++K E + ++G +GSGKSTLL+ + EP SG + +
Sbjct: 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIID 60
Query: 66 SS-------------SRLGYLEQNPDL-SHFSTISQYIDDTIK----DTIEAPYSPYSLL 107
++G + Q +L H + + IK EA LL
Sbjct: 61 GLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELL 120
Query: 108 KKFNL--REQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWME---QE 162
+K L + LS GQ + VA+ + L P +++ DEPT+ LD + + ++
Sbjct: 121 EKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKD 180
Query: 163 LLKINSALIFVSHDRRFLETLSTTTVWLDRG 193
L + ++ V+H+ F ++ +++D G
Sbjct: 181 LAEEGMTMVVVTHEMGFAREVADRVIFMDDG 211
>gnl|CDD|32710 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 89.1 bits (221), Expect = 3e-18
Identities = 61/207 (29%), Positives = 100/207 (48%), Gaps = 27/207 (13%)
Query: 284 VLEADKITKQY-DDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFIT 342
++ + ++K Y R ++D S I GE + + GP+GAGK+TLLKL+ G+ +P G I
Sbjct: 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKIL 60
Query: 343 LG----TNLKIATIDQKREDID---------PDKSLASYLTGSSGDSLMVRGES----RH 385
+ + LK I R I PD+++ + L V G+ R
Sbjct: 61 VNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP----LRVIGKPPREIRR 116
Query: 386 VAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD----FET 441
+ D + +A +L LSGGE+ R +AR + L+ DEPT +LD +E
Sbjct: 117 RVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEI 176
Query: 442 LDFLERTITQLQGTILIVSHDRDFLDR 468
+ E I +L T+L+ +HD + ++R
Sbjct: 177 MRLFEE-INRLGTTVLMATHDLELVNR 202
Score = 74.8 bits (184), Expect = 6e-14
Identities = 49/226 (21%), Positives = 98/226 (43%), Gaps = 36/226 (15%)
Query: 5 ILRLDHISATI-GGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF 63
++R +++S GG + L+DV I E + L G +G+GKSTLLK+ G P G +
Sbjct: 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKIL 60
Query: 64 LH-------SSSRLGYLEQN-----------PDLSHFSTIS------QYIDDTIKDTIEA 99
++ + +L + PD + + ++ I+ +
Sbjct: 61 VNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSE 120
Query: 100 PYSPYSLLKKFNLREQDRI--ENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIH 157
+L L+ + R LS G+ + VA+ + ++++P +L+ DEPT +LD
Sbjct: 121 ------VLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSW 174
Query: 158 WMEQELLKIN---SALIFVSHDRRFLETLSTTTVWLDRGCLHHLDQ 200
+ + +IN + ++ +HD + + + L+ G L +
Sbjct: 175 EIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220
>gnl|CDD|31323 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 88.6 bits (220), Expect = 4e-18
Identities = 61/209 (29%), Positives = 106/209 (50%), Gaps = 25/209 (11%)
Query: 284 VLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL 343
++E ++K + D+ V+K SL + GE + I+GP+G+GK+TLL+ L G +PD G IT+
Sbjct: 2 MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITV 61
Query: 344 -GTNLKIAT-IDQKREDID---------PDKSLASYLTGSSGDSLMVRGESRHVAGYIKD 392
G ++ I + R + P ++ +T + + V+ S+ A
Sbjct: 62 DGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLA---PVKVKKLSKAEAREKAL 118
Query: 393 FLFH----PDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERT 448
L D+A + LSGG++ R +AR LA ++ DEPT+ LD E + +
Sbjct: 119 ELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDV 178
Query: 449 ITQL--QG-TILIVSHD----RDFLDRTV 470
+ L +G T++IV+H+ R+ DR +
Sbjct: 179 MKDLAEEGMTMIIVTHEMGFAREVADRVI 207
Score = 87.1 bits (216), Expect = 1e-17
Identities = 51/212 (24%), Positives = 102/212 (48%), Gaps = 22/212 (10%)
Query: 4 PILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF 63
++ + ++S + G ++L+ + LS++ E + ++G +GSGKSTLL+ G+ EP SG++
Sbjct: 1 MMIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT 60
Query: 64 LHSS------------SRLGYLEQNPDL-SHFSTISQYIDDTIK----DTIEAPYSPYSL 106
+ ++G + Q +L H + + +K EA L
Sbjct: 61 VDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALEL 120
Query: 107 LKKFNLREQDRI--ENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELL 164
L+K L ++ LS GQ + VA+ + L P +++ DEPT+ LD + + +
Sbjct: 121 LEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMK 180
Query: 165 KINS---ALIFVSHDRRFLETLSTTTVWLDRG 193
+ +I V+H+ F ++ +++D+G
Sbjct: 181 DLAEEGMTMIIVTHEMGFAREVADRVIFMDQG 212
>gnl|CDD|31329 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 88.0 bits (218), Expect = 6e-18
Identities = 56/210 (26%), Positives = 85/210 (40%), Gaps = 23/210 (10%)
Query: 277 TQSSGKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKP 336
+ S K + K ++ + +KD S I+ GE +GI+G NGAGK+TLLKL+ G KP
Sbjct: 20 SYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKP 79
Query: 337 DCGFITLGTNLKIATIDQKREDIDPDKSLASYLTGSSGDSL------MVRGESRHVAGYI 390
G + K+A + I+ LTG L + R E I
Sbjct: 80 TSGKVK--VTGKVAPL------IELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEI 131
Query: 391 KDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTIT 450
+F D +K S G R + + L++DE D F E+ +
Sbjct: 132 IEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGD---AAFQEKCLE 188
Query: 451 QLQ------GTILIVSHDRDFLDRTVTSTI 474
+L TI++VSHD + + I
Sbjct: 189 RLNELVEKNKTIVLVSHDLGAIKQYCDRAI 218
Score = 84.9 bits (210), Expect = 6e-17
Identities = 54/209 (25%), Positives = 90/209 (43%), Gaps = 33/209 (15%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGYLEQ---NP 77
L+D+ I ER+ ++G NG+GKSTLLK+ AGI +P SG V + +P
Sbjct: 43 LKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDP 102
Query: 78 DLSHFSTI----------SQYIDDTIKDTIEAPYSPYSLLKKFNLREQDRIENLSVGQTR 127
+L+ I + ID+ + + IE ++ L F + ++ S G
Sbjct: 103 ELTGRENIYLRGLILGLTRKEIDEKVDEIIE-----FAELGDFIDQP---VKTYSSGMYA 154
Query: 128 CVALMKMLISRPDILILDEPTNHLDFRTIHWME------QELLKINSALIFVSHDRRFLE 181
+A PDIL+LDE D + E EL++ N ++ VSHD ++
Sbjct: 155 RLAFSVATHVEPDILLLDEVLAVGD---AAFQEKCLERLNELVEKNKTIVLVSHDLGAIK 211
Query: 182 TLSTTTVWLDRGCLHH---LDQGFAYFES 207
+WL+ G + ++ +E
Sbjct: 212 QYCDRAIWLEHGQIRMEGSPEEVIPAYEE 240
>gnl|CDD|73024 cd03265, ABC_DrrA, DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins..
Length = 220
Score = 87.6 bits (217), Expect = 9e-18
Identities = 63/199 (31%), Positives = 92/199 (46%), Gaps = 25/199 (12%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLG 344
+E + + K+Y D V+ S R+ GE G++GPNGAGKTT +K+LT +KP G
Sbjct: 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG----- 55
Query: 345 TNLKIATIDQKREDID---------PDKSLASYLTGSSGDSLMVR------GESRHVAGY 389
+A D RE + D S+ LTG + R E R
Sbjct: 56 -RATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDE 114
Query: 390 IKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTI 449
+ DF+ + A L+K SGG + R +AR L L +DEPT LD +T + I
Sbjct: 115 LLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYI 174
Query: 450 TQLQG----TILIVSHDRD 464
+L+ TIL+ +H +
Sbjct: 175 EKLKEEFGMTILLTTHYME 193
Score = 58.3 bits (141), Expect = 6e-09
Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 28/169 (16%)
Query: 9 DHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGN--VFLHS 66
+++ G + ++ V ++ E L+G NG+GK+T +K+ + +P SG V H
Sbjct: 4 ENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHD 63
Query: 67 SSR--------LGYLEQNP----------DLSHFSTISQYIDDTIKDTIEAPYSPYSLLK 108
R +G + Q+ +L + + ++ I+ LL
Sbjct: 64 VVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERID------ELLD 117
Query: 109 KFNLRE-QDR-IENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRT 155
L E DR ++ S G R + + + L+ RP++L LDEPT LD +T
Sbjct: 118 FVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQT 166
>gnl|CDD|72977 cd03218, ABC_YhbG, The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium..
Length = 232
Score = 87.5 bits (217), Expect = 1e-17
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 18/193 (9%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL- 343
L A+ ++K+Y R VV SL + GE +G++GPNGAGKTT ++ G +KPD G I L
Sbjct: 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLD 60
Query: 344 GTNLKIATIDQKRED----IDPDKSLASYLTGSSGDSLMVRGESRHVAGY-----IKDFL 394
G ++ + ++ + + S+ LT ++++ E R ++ +++ L
Sbjct: 61 GQDITKLPMHKRARLGIGYLPQEASIFRKLTVE--ENILAVLEIRGLSKKEREEKLEELL 118
Query: 395 --FHPDQ-AHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQ 451
FH S LSGGE+ R +AR LA FL++DEP +D + +++ I
Sbjct: 119 EEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKI 178
Query: 452 LQGT---ILIVSH 461
L+ +LI H
Sbjct: 179 LKDRGIGVLITDH 191
Score = 71.7 bits (176), Expect = 6e-13
Identities = 65/243 (26%), Positives = 110/243 (45%), Gaps = 37/243 (15%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL- 64
LR +++S G ++ V LS+K E + L+G NG+GK+T + G+ +P SG + L
Sbjct: 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLD 60
Query: 65 ---------HSSSRLG--YLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPY--------S 105
H +RLG YL Q S F ++ +++ I +E
Sbjct: 61 GQDITKLPMHKRARLGIGYLPQEA--SIFRKLT--VEENILAVLEIRGLSKKEREEKLEE 116
Query: 106 LLKKFNLRE--QDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLD---FRTIHWME 160
LL++F++ + + +LS G+ R V + + L + P L+LDEP +D + I +
Sbjct: 117 LLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKII 176
Query: 161 QELLKINSALIFVSHDRRFLETLSTTTVWLDRGCLHHLDQGFAYFESWKKNILQQEQIRY 220
+ L ++ H+ R ETLS T DR + + +G E + I E +R
Sbjct: 177 KILKDRGIGVLITDHNVR--ETLSIT----DRAYI--IYEGKVLAEGTPEEIAANELVRK 228
Query: 221 HNL 223
L
Sbjct: 229 VYL 231
>gnl|CDD|30759 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 87.1 bits (216), Expect = 1e-17
Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 22/165 (13%)
Query: 4 PILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF 63
P+L ++++SA G I L+ V L ++ E + L+G NG+GK+TLLK G+ P+SG +
Sbjct: 2 PMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRII 61
Query: 64 L----------HSSSRLG--YLEQNPDLSHFSTIS--------QYIDDTIKDTIEAPYSP 103
H +RLG Y+ + + F ++ Y +
Sbjct: 62 FDGEDITGLPPHERARLGIAYVPEGRRI--FPRLTVEENLLLGAYARRDKEAQERDLEEV 119
Query: 104 YSLLKKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPT 148
Y L + R R LS G+ + +A+ + L+SRP +L+LDEP+
Sbjct: 120 YELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPS 164
Score = 69.7 bits (171), Expect = 2e-12
Identities = 57/208 (27%), Positives = 95/208 (45%), Gaps = 37/208 (17%)
Query: 284 VLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL 343
+LE + ++ Y ++ SL + GE + ++G NGAGKTTLLK + G ++P G I
Sbjct: 3 MLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIF 62
Query: 344 G----TNLK--------IATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIK 391
T L IA + + R I P ++ ++L++ +R +
Sbjct: 63 DGEDITGLPPHERARLGIAYVPEGRR-IFPRLTVE--------ENLLLGAYARRDKEAQE 113
Query: 392 DF------LFHP---DQAHSLMKHLSGGEK-MRAIVARVLAQPFNFLIMDEPTNDLDFET 441
LF P ++ + LSGGE+ M AI AR L L++DEP+ L +
Sbjct: 114 RDLEEVYELF-PRLKERRNQRAGTLSGGEQQMLAI-ARALMSRPKLLLLDEPSEGLAPKI 171
Query: 442 LDFLERTITQLQG----TILIVSHDRDF 465
++ + I +L+ TIL+V + F
Sbjct: 172 VEEIFEAIKELRKEGGMTILLVEQNARF 199
>gnl|CDD|73028 cd03269, ABC_putative_ATPase, This subfamily is involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea,
the typical organization consists of one ABC and one or
two IMs. Eukaryote systems of the ABCA subfamily
display ABC domains strongly similar to this family.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region in addition to the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 210
Score = 87.2 bits (216), Expect = 1e-17
Identities = 55/212 (25%), Positives = 94/212 (44%), Gaps = 32/212 (15%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLH 65
L +++++ G + L D+ S++ E L+G NG+GK+T +++ GI P SG V
Sbjct: 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFD 60
Query: 66 SS-------SRLGYLEQNPDLSHFSTISQYIDDTIKDTI------------EAPYSPYSL 106
+R+GYL + L Y + D + EA
Sbjct: 61 GKPLDIAARNRIGYLPEERGL--------YPKMKVIDQLVYLAQLKGLKKEEARRRIDEW 112
Query: 107 LKKFNLRE--QDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQ--- 161
L++ L E R+E LS G + V + +I P++LILDEP + LD + ++
Sbjct: 113 LERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIR 172
Query: 162 ELLKINSALIFVSHDRRFLETLSTTTVWLDRG 193
EL + +I +H +E L + L++G
Sbjct: 173 ELARAGKTVILSTHQMELVEELCDRVLLLNKG 204
Score = 78.3 bits (193), Expect = 5e-15
Identities = 56/201 (27%), Positives = 96/201 (47%), Gaps = 25/201 (12%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL- 343
LE + +TK++ + D S + GE G++GPNGAGKTT ++++ G I PD G +
Sbjct: 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFD 60
Query: 344 GTNLKIATID------------QKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIK 391
G L IA + K + ID LA L G + + E+R
Sbjct: 61 GKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQ-LKG------LKKEEARRRIDEWL 113
Query: 392 DFLFHPDQAHSLMKHLSGGEKMRA-IVARVLAQPFNFLIMDEPTNDLDFETLDFLERTIT 450
+ L + A+ ++ LS G + + +A V+ P LI+DEP + LD ++ L+ I
Sbjct: 114 ERLELSEYANKRVEELSKGNQQKVQFIAAVIHDP-ELLILDEPFSGLDPVNVELLKDVIR 172
Query: 451 QLQG---TILIVSHDRDFLDR 468
+L T+++ +H + ++
Sbjct: 173 ELARAGKTVILSTHQMELVEE 193
>gnl|CDD|73027 cd03268, ABC_BcrA_bacitracin_resist, The BcrA subfamily represents
ABC transporters involved in peptide antibiotic
resistance. Bacitracin is a dodecapeptide antibiotic
produced by B. licheniformis and B. subtilis. The
synthesis of bacitracin is non-ribosomally catalyzed by
a multienzyme complex BcrABC. Bacitracin has potent
antibiotic activity against gram-positive bacteria. The
inhibition of peptidoglycan biosynthesis is the best
characterized bacterial effect of bacitracin. The
bacitracin resistance of B. licheniformis is mediated by
the ABC transporter Bcr which is composed of two
identical BcrA ATP-binding subunits and one each of the
integral membrane proteins, BcrB and BcrC. B. subtilis
cells carrying bcr genes on high-copy number plasmids
develop collateral detergent sensitivity, a similar
phenomenon in human cells with overexpressed multi-drug
resistance P-glycoprotein..
Length = 208
Score = 87.1 bits (216), Expect = 1e-17
Identities = 48/212 (22%), Positives = 94/212 (44%), Gaps = 30/212 (14%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLH 65
L+ + ++ T G +L D+ L +K E +G NG+GK+T +KI G+ +P SG +
Sbjct: 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFD 60
Query: 66 SSS---------RLGYLEQNP----------DLSHFSTISQYIDDTIKDTIEAPYSPYSL 106
S R+G L + P +L + + I + ++
Sbjct: 61 GKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLD-------- 112
Query: 107 LKKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKI 166
+ + +++ S+G + + + L+ PD+LILDEPTN LD I + + +L +
Sbjct: 113 VVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSL 172
Query: 167 NS---ALIFVSHDRRFLETLSTTTVWLDRGCL 195
++ SH ++ ++ +++G L
Sbjct: 173 RDQGITVLISSHLLSEIQKVADRIGIINKGKL 204
Score = 84.8 bits (210), Expect = 6e-17
Identities = 60/191 (31%), Positives = 89/191 (46%), Gaps = 21/191 (10%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLG 344
L+ + +TK Y + V+ D SL + GE G +GPNGAGKTT +K++ G IKPD G IT
Sbjct: 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITF- 59
Query: 345 TNLKIATIDQKREDIDPDKSLAS---------YLTGSS--GDSLMVRGESRHVAGYIKDF 393
+++I+ + + + LT + G + + D
Sbjct: 60 ------DGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDV 113
Query: 394 LFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQ 453
+ D A +K S G K R +A L + LI+DEPTN LD + + L I L+
Sbjct: 114 VGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLR 173
Query: 454 ---GTILIVSH 461
T+LI SH
Sbjct: 174 DQGITVLISSH 184
>gnl|CDD|34592 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 86.8 bits (215), Expect = 1e-17
Identities = 59/203 (29%), Positives = 90/203 (44%), Gaps = 18/203 (8%)
Query: 284 VLEADKITKQYDD--RLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFI 341
LE ++ Y +K+F+L + GE + I+G +G+GK+TLL+LL G P G I
Sbjct: 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSI 395
Query: 342 TL-GTNLKIATIDQKREDIDP--------DKSLASYLTGSSGDSLMVR-GESRHVAGYIK 391
TL G + RE I +L L ++ D+ + G K
Sbjct: 396 TLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEK 455
Query: 392 DFLFHPDQAHSLM----KHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFET-LDFLE 446
PD ++ + + LSGGE+ R +AR L ++DEPT LD T L
Sbjct: 456 LLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLA 515
Query: 447 RTITQLQG-TILIVSHDRDFLDR 468
+G T+L+V+H L+R
Sbjct: 516 LLFEHAEGKTLLMVTHRLRGLER 538
Score = 85.3 bits (211), Expect = 5e-17
Identities = 59/234 (25%), Positives = 99/234 (42%), Gaps = 41/234 (17%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGYLEQN-PDL 79
L++ L++ E++ ++G +GSGKSTLL++ AG +PQ G++ L+ EQ +
Sbjct: 354 LKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRET 413
Query: 80 SHFSTISQYI-DDTIKDTI---------EAPYSPY----------SLLKKFNLREQDRIE 119
T ++ T++D + E ++ S N +
Sbjct: 414 ISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGR 473
Query: 120 NLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKI------NSALIFV 173
LS G+ R +AL + L+ + +LDEPT LD T E+++L + L+ V
Sbjct: 474 RLSGGERRRLALARALLHDAPLWLLDEPTEGLDPIT----ERQVLALLFEHAEGKTLLMV 529
Query: 174 SHDRRFLETLSTTTVWLDRGCLHHLDQGFAYFESWKKNILQQEQIRYHNLKKKN 227
+H R LE +DR + LD G E L RY L + +
Sbjct: 530 THRLRGLER-------MDRIIV--LDNG-KIIEEGTHAELLANNGRYKRLYQLD 573
>gnl|CDD|31316 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 86.8 bits (215), Expect = 1e-17
Identities = 52/206 (25%), Positives = 87/206 (42%), Gaps = 32/206 (15%)
Query: 1 MSLPILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSG 60
++ P++ L ++S G +L D+ + P E +VG NG+GK+TLL + G P SG
Sbjct: 27 INEPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSG 86
Query: 61 NVFLHSSSRLGYLEQNPDL-SHFSTISQYIDDTIK--------------DTIEAPYSPYS 105
+V L R G E +L +S + + + +I +
Sbjct: 87 DVTLL-GRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLT 145
Query: 106 ---------LLKKFNL--REQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFR 154
LL+ +LS G+ R V + + L+ P++LILDEP LD
Sbjct: 146 AEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLI 205
Query: 155 TIHWMEQELLKINS-----ALIFVSH 175
+ L ++ + AL+FV+H
Sbjct: 206 AREQLLNRLEELAASPGAPALLFVTH 231
Score = 80.3 bits (198), Expect = 1e-15
Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 23/204 (11%)
Query: 281 GKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGF 340
+ ++E ++ + + + ++ D S +++ GE IVGPNGAGKTTLL LLTG+ P G
Sbjct: 28 NEPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGD 87
Query: 341 ITL--------GTNLKI--------ATIDQK-REDIDPDKSLASYLTGSSG-DSLMVRGE 382
+TL T ++ + + ++ R + S S G + E
Sbjct: 88 VTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAE 147
Query: 383 SRHVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETL 442
A ++ + L A LS GE+ R ++AR L + LI+DEP LD
Sbjct: 148 DLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAR 207
Query: 443 DFLERTITQLQG-----TILIVSH 461
+ L + +L +L V+H
Sbjct: 208 EQLLNRLEELAASPGAPALLFVTH 231
>gnl|CDD|31322 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 85.3 bits (211), Expect = 5e-17
Identities = 52/201 (25%), Positives = 92/201 (45%), Gaps = 35/201 (17%)
Query: 5 ILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL 64
++ +++S G + DV L+I+ E + L+G +GSGK+T LK+ + EP SG + +
Sbjct: 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILI 60
Query: 65 HSSS-----------RLGYLEQNPDLSHFSTISQYI----------DDTIKDTIEAPYSP 103
++GY+ Q L T+++ I + IK +
Sbjct: 61 DGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADE---- 116
Query: 104 YSLLKKFNLREQDRIE----NLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWM 159
LL L + + LS GQ + V + + L + P IL++DEP LD T +
Sbjct: 117 --LLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQL 174
Query: 160 EQELLKINSAL----IFVSHD 176
++E+ ++ L +FV+HD
Sbjct: 175 QEEIKELQKELGKTIVFVTHD 195
Score = 81.9 bits (202), Expect = 4e-16
Identities = 60/197 (30%), Positives = 96/197 (48%), Gaps = 18/197 (9%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLG 344
+E + ++K+Y ++ V D +L I GE + ++GP+G+GKTT LK++ I+P G I +
Sbjct: 2 IEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILID 61
Query: 345 TNLKIATID--QKREDID---PDKSLASYLTGSSGDSL---MVRGESRHVAGYIKDFL-- 394
I+ +D + R I L +LT + + ++ + + + L
Sbjct: 62 -GEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDL 120
Query: 395 --FHPDQ-AHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQ 451
P + A LSGG++ R VAR LA L+MDEP LD T L+ I +
Sbjct: 121 VGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKE 180
Query: 452 LQG----TILIVSHDRD 464
LQ TI+ V+HD D
Sbjct: 181 LQKELGKTIVFVTHDID 197
>gnl|CDD|31330 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 84.5 bits (209), Expect = 7e-17
Identities = 56/220 (25%), Positives = 99/220 (45%), Gaps = 33/220 (15%)
Query: 5 ILRLDHISATI-----GGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQS 59
++ L+++S T G + L DV L I E ++G +G+GKSTLL++ + P S
Sbjct: 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTS 60
Query: 60 GNVFLHS--------------SSRLGYLEQNPDLSHFSTISQ------YIDDTIKDTIEA 99
G+VF+ ++G + Q+ +L T+ + + K I+
Sbjct: 61 GSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQ 120
Query: 100 PYSPYSLLKKFNL--REQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIH 157
+ LL+ L + LS GQ + VA+ + L + P IL+ DE T+ LD T
Sbjct: 121 RVAE--LLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQ 178
Query: 158 WMEQELLKINSAL----IFVSHDRRFLETLSTTTVWLDRG 193
+ + L IN L + ++H+ ++ + LD+G
Sbjct: 179 SILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQG 218
Score = 79.5 bits (196), Expect = 3e-15
Identities = 61/208 (29%), Positives = 100/208 (48%), Gaps = 24/208 (11%)
Query: 284 VLEADKITKQYDDR-----LVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDC 338
++E + ++K + + D SL I GE GI+G +GAGK+TLL+L+ +P
Sbjct: 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTS 60
Query: 339 GFITLG----TNLKIATIDQKREDID---PDKSLASYLT--GSSGDSLMVRGESR----- 384
G + + T L A + Q R+ I +L S T + L + G +
Sbjct: 61 GSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQ 120
Query: 385 HVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFET--- 441
VA + + + D+A LSGG+K R +AR LA L+ DE T+ LD ET
Sbjct: 121 RVAELL-ELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQS 179
Query: 442 -LDFLERTITQLQGTILIVSHDRDFLDR 468
L+ L+ +L TI++++H+ + + R
Sbjct: 180 ILELLKDINRELGLTIVLITHEMEVVKR 207
>gnl|CDD|35278 KOG0055, KOG0055, KOG0055, Multidrug/pheromone exporter, ABC
superfamily [Secondary metabolites biosynthesis,
transport and catabolism].
Length = 1228
Score = 84.5 bits (209), Expect = 9e-17
Identities = 51/185 (27%), Positives = 87/185 (47%), Gaps = 27/185 (14%)
Query: 17 GIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSS--------- 67
+ +L+ V L I + + LVG +GSGKSTL+++ A +P SG V +
Sbjct: 365 DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKW 424
Query: 68 --SRLGYLEQNPDLSHFS-TISQYI--------DDTIKDTIEAPYSPY---SLLKKFNLR 113
S++G + Q P L F+ TI + I + I++ +A + L ++
Sbjct: 425 LRSQIGLVSQEPVL--FATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTL 482
Query: 114 EQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQEL--LKINSALI 171
+R LS GQ + +A+ + L+ P IL+LDE T+ LD + +++ L I
Sbjct: 483 VGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTI 542
Query: 172 FVSHD 176
V+H
Sbjct: 543 VVAHR 547
Score = 80.6 bits (199), Expect = 1e-15
Identities = 65/294 (22%), Positives = 125/294 (42%), Gaps = 36/294 (12%)
Query: 295 DDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-GTNLKIATID 353
D ++K SL+I G+ + +VGP+G+GK+TL++LL P G + + G +++ +
Sbjct: 364 PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLK 423
Query: 354 QKREDI-----DP---DKSLASYLTGSSGDSLMVRGESRHVAGYIKDF-LFHPDQAHSLM 404
R I +P ++ + D+ E A DF L PD +L+
Sbjct: 424 WLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLV 483
Query: 405 K----HLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG--TILI 458
LSGG+K R +AR L + L++DE T+ LD E+ ++ + + T ++
Sbjct: 484 GERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIV 543
Query: 459 VSHDRDFLDRTVTSTIAAQN----IEDPNGYW-------IKYAGGYSDML-VQQKKSHPT 506
V+H STI + +E+ I G YS ++ +Q+ +
Sbjct: 544 VAHR--------LSTIRNADKIAVMEEGKIVEQGTHDELIALGGIYSSLVRLQELEKAAE 595
Query: 507 PQKKNPPAQSLQEETVKKEKKQKRKNRLSYSQKLLLERLPQEIHKIQLKITEKE 560
+++ + + ++K +R S LL + E + + +++
Sbjct: 596 DEEEEESLKEERSRSLKSSSSSPSLSRGSNRSNLLSVKPEGEDPEEPVSEEDEK 649
Score = 61.0 bits (148), Expect = 9e-10
Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 14/159 (8%)
Query: 296 DRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-GTNLKIATIDQ 354
D V+ + SL I G+ + +VGP+G+GK+T++ LL PD G + + G ++K +
Sbjct: 1002 DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKW 1061
Query: 355 KREDI-----DP---DKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQAHSLM-- 404
R+ I +P + ++ + S + +F+ Q +
Sbjct: 1062 LRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVG 1121
Query: 405 ---KHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFE 440
LSGG+K R +AR + + L++DE T+ LD E
Sbjct: 1122 ERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSE 1160
Score = 57.9 bits (140), Expect = 7e-09
Identities = 45/158 (28%), Positives = 80/158 (50%), Gaps = 25/158 (15%)
Query: 18 IDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL-----------HS 66
+ +L ++ LSI+ + + LVG +GSGKST++ + +P +G V +
Sbjct: 1003 VPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWL 1062
Query: 67 SSRLGYLEQNPDLSHFS-TISQYI-----DDTIKDTIEAPYSPY------SLLKKFNLRE 114
++G + Q P L F+ TI + I + + ++ IEA SL + ++ R
Sbjct: 1063 RKQIGLVSQEPVL--FNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRV 1120
Query: 115 QDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLD 152
+R LS GQ + +A+ + ++ P IL+LDE T+ LD
Sbjct: 1121 GERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALD 1158
>gnl|CDD|73025 cd03266, ABC_NatA_sodium_exporter, NatA is the ATPase component of
a bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilus, NatAB is inducible by
agents such as ethanol and protonophores, which lower
the protonmotive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunomycin- and doxorubicin-efflux system.
Hence, the functional NatAB is presumably assembled
with two copies of a single ATP-binding protein and a
single intergral membrane protein..
Length = 218
Score = 84.2 bits (208), Expect = 1e-16
Identities = 56/203 (27%), Positives = 84/203 (41%), Gaps = 34/203 (16%)
Query: 284 VLEADKITKQYDDR----LVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCG 339
++ AD +TK++ D V S + GE G++GPNGAGKTT L++L G ++PD G
Sbjct: 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAG 60
Query: 340 FITLGTNLKIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFL-FHPD 398
F T + D +E + + L S L R +R Y D
Sbjct: 61 FAT------VDGFDVVKEPAEARRRLGFV---SDSTGLYDRLTARENLEYFAGLYGLKGD 111
Query: 399 QAHSLMKHL-----------------SGGEKMRAIVARVLAQPFNFLIMDEPTNDLD-FE 440
+ + ++ L S G + + +AR L L++DEPT LD
Sbjct: 112 ELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMA 171
Query: 441 TLDFLE--RTITQLQGTILIVSH 461
T E R + L IL +H
Sbjct: 172 TRALREFIRQLRALGKCILFSTH 194
Score = 74.9 bits (184), Expect = 7e-14
Identities = 51/201 (25%), Positives = 91/201 (45%), Gaps = 31/201 (15%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL----------HSSSRL 70
+ V ++KP E L+G NG+GK+T L++ AG+ EP +G + + RL
Sbjct: 21 VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL 80
Query: 71 GYLEQN----------PDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLRE--QDRI 118
G++ + +L +F+ + D + +E L + + E R+
Sbjct: 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLE------ELADRLGMEELLDRRV 134
Query: 119 ENLSVGQTRCVALMKMLISRPDILILDEPTNHLDF---RTIHWMEQELLKINSALIFVSH 175
S G + VA+ + L+ P +L+LDEPT LD R + ++L + ++F +H
Sbjct: 135 GGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTH 194
Query: 176 DRRFLETLSTTTVWLDRGCLH 196
+ +E L V L RG +
Sbjct: 195 IMQEVERLCDRVVVLHRGRVV 215
>gnl|CDD|33436 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 84.1 bits (208), Expect = 1e-16
Identities = 62/217 (28%), Positives = 99/217 (45%), Gaps = 30/217 (13%)
Query: 284 VLEADKITKQY-DDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFIT 342
++E ++K Y +KD +L I+ GE + I+GP+GAGK+TLL+ L G + P G I
Sbjct: 3 MIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEIL 62
Query: 343 LG----TNLKIATIDQKREDID---------PDKS-LASYLTGSSGDSLMVRG------- 381
T LK + + R DI P S L + L G G + R
Sbjct: 63 FNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSK 122
Query: 382 ESRHVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFET 441
E + A + + D+A+ LSGG++ R +AR L Q ++ DEP LD E+
Sbjct: 123 EDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPES 182
Query: 442 ----LDFLERTITQLQGTILIVSHD----RDFLDRTV 470
+D L+ + T+++ H + + DR +
Sbjct: 183 AKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRII 219
Score = 79.1 bits (195), Expect = 4e-15
Identities = 50/210 (23%), Positives = 86/210 (40%), Gaps = 41/210 (19%)
Query: 4 PILRLDHISAT-IGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNV 62
++ + ++S T GG L+DV L I E + ++G +G+GKSTLL+ G+ +P SG +
Sbjct: 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61
Query: 63 FLHSSS--------------RLGYLEQN----PDLSHFSTISQYIDDTI----------- 93
+ +G + Q P LS +
Sbjct: 62 LFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFS 121
Query: 94 -KDTIEAPYSPYSLLKKFNLREQ--DRIENLSVGQTRCVALMKMLISRPDILILDEPTNH 150
+D +A L++ + ++ R LS GQ + VA+ + L+ +P I++ DEP
Sbjct: 122 KEDKAQA----LDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVAS 177
Query: 151 LDFRTIHWMEQELLKIN----SALIFVSHD 176
LD + + L IN +I H
Sbjct: 178 LDPESAKKVMDILKDINQEDGITVIVNLHQ 207
>gnl|CDD|33636 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 84.0 bits (208), Expect = 1e-16
Identities = 58/215 (26%), Positives = 96/215 (44%), Gaps = 27/215 (12%)
Query: 279 SSGKLVLEADKIT-KQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPD 337
+ G++VLE + ++ K VKD S + GE +GI G G G++ L++ ++G KP
Sbjct: 252 TPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA 311
Query: 338 CGFITLG-------------TNLKIATI--DQKREDIDPDKSLA--------SYLTGSSG 374
G I L L +A + D+ + D SLA S G
Sbjct: 312 SGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRG 371
Query: 375 DSLMVRGESRHVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPT 434
L R + I++F + + LSGG + + I+AR LA+ + LI +PT
Sbjct: 372 GFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPT 431
Query: 435 NDLDFETLDFLERTITQL--QGT-ILIVSHDRDFL 466
LD ++F+ + +L G +L++S D D +
Sbjct: 432 RGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEI 466
Score = 82.9 bits (205), Expect = 2e-16
Identities = 53/205 (25%), Positives = 85/205 (41%), Gaps = 42/205 (20%)
Query: 4 PILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF 63
P L + I+ G+ DV LS+K E L+G NG+GKSTL+KI G+ +P SG +
Sbjct: 3 PALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIR 62
Query: 64 LH------------SSSRLGYLEQNPDLSHFSTISQY-IDDTIKDTIEAPYSPYSLLKK- 109
+ +G + Q HF + + + I +E ++
Sbjct: 63 VDGKEVRIKSPRDAIRLGIGMVHQ-----HFMLVPTLTVAENIILGLEPSKGGLIDRRQA 117
Query: 110 ------------FNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIH 157
+ ++ +LSVG+ + V ++K L +LILDEPT L +
Sbjct: 118 RARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEA- 176
Query: 158 WMEQELLKINSAL-------IFVSH 175
EL +I L IF++H
Sbjct: 177 ---DELFEILRRLAAEGKTIIFITH 198
Score = 74.8 bits (184), Expect = 7e-14
Identities = 51/199 (25%), Positives = 85/199 (42%), Gaps = 19/199 (9%)
Query: 281 GKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGF 340
+ LE ITK++ + D SL + GE ++G NGAGK+TL+K+L G +PD G
Sbjct: 1 MEPALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGE 60
Query: 341 ITLG------------TNLKIATIDQKREDIDPDKSLASYLTGSSGDSLMV---RGESRH 385
I + L I + Q + + + G + R
Sbjct: 61 IRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARAR 120
Query: 386 VAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFL 445
+ + + D + + LS GE+ R + + L + LI+DEPT L + D L
Sbjct: 121 IKELSERYGLPVD-PDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADEL 179
Query: 446 ERTITQL--QG-TILIVSH 461
+ +L +G TI+ ++H
Sbjct: 180 FEILRRLAAEGKTIIFITH 198
Score = 57.9 bits (140), Expect = 8e-09
Identities = 47/220 (21%), Positives = 90/220 (40%), Gaps = 38/220 (17%)
Query: 4 PILRLDHIS-ATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNV 62
+L ++ +S G+ ++DV ++ E + + G G+G+S L++ +G+ +P SG +
Sbjct: 256 VVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRI 315
Query: 63 FLHS---------------------SSRLGY-------LEQNPDLSHFSTISQYIDDTIK 94
L+ R G+ L +N L +
Sbjct: 316 LLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLD 375
Query: 95 -DTIEAPYSPYSLLKKFNLR---EQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNH 150
I L+++F++R +LS G + + L + L RPD+LI +PT
Sbjct: 376 RRAIRKFAR--ELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRG 433
Query: 151 LDFRTIHWMEQELLKI---NSALIFVSHDRRFLETLSTTT 187
LD I ++ + LL++ A++ +S D + LS
Sbjct: 434 LDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRI 473
>gnl|CDD|72975 cd03216, ABC_Carb_Monos_I, This family represents the domain I of
the carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses (such as xylose, arabinose, and ribose), that
cannot be broken down to simple sugars by hydrolysis.
Pentoses include xylose, arabinose, and ribose.
Important hexoses include glucose, galactose, and
fructose. In members of the Carb_monos family, the
single hydrophobic gene product forms a homodimer while
the ABC protein represents a fusion of two
nucleotide-binding domains. However, it is assumed that
two copies of the ABC domains are present in the
assembled transporter..
Length = 163
Score = 83.9 bits (208), Expect = 1e-16
Identities = 48/173 (27%), Positives = 77/173 (44%), Gaps = 36/173 (20%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLH 65
L L I+ GG+ L V LS++ E L+G NG+GKSTL+KI +G+ +P SG + +
Sbjct: 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVD 60
Query: 66 SSSRLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLREQDRIENLSVGQ 125
F++ D + I Y LSVG+
Sbjct: 61 GKEV-----------SFASPR----DARRAGIAMVY------------------QLSVGE 87
Query: 126 TRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINS---ALIFVSH 175
+ V + + L +LILDEPT L + + + + ++ + A+IF+SH
Sbjct: 88 RQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISH 140
Score = 83.9 bits (208), Expect = 1e-16
Identities = 50/184 (27%), Positives = 76/184 (41%), Gaps = 51/184 (27%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLG 344
LE ITK++ + SL + GE ++G NGAGK+TL+K+L+G KPD G
Sbjct: 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSG----- 55
Query: 345 TNLKIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQAHSL- 403
++V G+ A P A
Sbjct: 56 -------------------------------EILVDGKEVSFAS--------PRDARRAG 76
Query: 404 --MKH-LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG---TIL 457
M + LS GE+ +AR LA+ LI+DEPT L ++ L + I +L+ ++
Sbjct: 77 IAMVYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVI 136
Query: 458 IVSH 461
+SH
Sbjct: 137 FISH 140
>gnl|CDD|35280 KOG0057, KOG0057, KOG0057, Mitochondrial Fe/S cluster exporter, ABC
superfamily [Intracellular trafficking, secretion, and
vesicular transport].
Length = 591
Score = 83.4 bits (206), Expect = 2e-16
Identities = 58/197 (29%), Positives = 85/197 (43%), Gaps = 31/197 (15%)
Query: 295 DDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLL------TGKIKPDCGFITLGTNLK 348
R V+K S I GE + IVG NG+GK+T+L+LL +G I D G ++K
Sbjct: 363 PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILID------GQDIK 416
Query: 349 IATIDQKREDID--PDKSL---------ASYLTGSSGDSLMVRGESRHVAGYIKDFLFHP 397
+++ R+ I P S+ Y S+ D +V R AG P
Sbjct: 417 EVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKR--AGLHDVISRLP 474
Query: 398 D----QAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQ 453
D LSGGEK R +AR + L++DE T+ LD ET + I +
Sbjct: 475 DGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVM 534
Query: 454 G--TILIVSHDRDFLDR 468
T++++ H D L
Sbjct: 535 SGRTVIMIVHRLDLLKD 551
Score = 66.4 bits (162), Expect = 2e-11
Identities = 49/198 (24%), Positives = 83/198 (41%), Gaps = 50/198 (25%)
Query: 20 LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLH---------SSSR- 69
+L+ V +I E++ +VG NGSGKST+L++ + SG++ + S R
Sbjct: 367 VLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQ 425
Query: 70 -LGYLEQNPDLSHFSTISQYIDDTIKDTIE------APYSPYSLLKKFNLREQ------- 115
+G + Q+ S +DTI I+ + K+ L +
Sbjct: 426 SIGVVPQD---------SVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDG 476
Query: 116 ------DRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLK-INS 168
+R LS G+ + V+L + + IL+LDE T+ LD T E+E+L I
Sbjct: 477 YQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSET----EREILDMIMD 532
Query: 169 AL-----IFVSHDRRFLE 181
+ I + H L+
Sbjct: 533 VMSGRTVIMIVHRLDLLK 550
>gnl|CDD|73051 cd03292, ABC_FtsE_transporter, FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring..
Length = 214
Score = 83.0 bits (205), Expect = 2e-16
Identities = 58/212 (27%), Positives = 100/212 (47%), Gaps = 19/212 (8%)
Query: 285 LEADKITKQY-DDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL 343
+E +TK Y + + ++ I GE + +VGP+GAGK+TLLKL+ + P G I +
Sbjct: 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRV 60
Query: 344 -GTNL------KIATIDQKREDIDPDKSLASYLT--GSSGDSLMVRGES-RHVAGYIKDF 393
G ++ I + +K + D L + +L V G R + +
Sbjct: 61 NGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAA 120
Query: 394 LFH---PDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFET----LDFLE 446
L + +L LSGGE+ R +AR + LI DEPT +LD +T ++ L+
Sbjct: 121 LELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLK 180
Query: 447 RTITQLQGTILIVSHDRDFLDRTVTSTIAAQN 478
+ I + T+++ +H ++ +D T IA +
Sbjct: 181 K-INKAGTTVVVATHAKELVDTTRHRVIALER 211
Score = 74.9 bits (184), Expect = 7e-14
Identities = 54/201 (26%), Positives = 91/201 (45%), Gaps = 23/201 (11%)
Query: 16 GGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSS-------S 68
G L + +SI E + LVG +G+GKSTLLK+ P SG + ++
Sbjct: 12 NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGR 71
Query: 69 RLGYLEQN-----------PDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLREQDR 117
+ YL + PD + + ++ ++ T E + L+ L + R
Sbjct: 72 AIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHR 131
Query: 118 I--ENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINSA---LIF 172
LS G+ + VA+ + +++ P ILI DEPT +LD T + L KIN A ++
Sbjct: 132 ALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVV 191
Query: 173 VSHDRRFLETLSTTTVWLDRG 193
+H + ++T + L+RG
Sbjct: 192 ATHAKELVDTTRHRVIALERG 212
>gnl|CDD|73023 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 211
Score = 83.3 bits (206), Expect = 2e-16
Identities = 59/220 (26%), Positives = 99/220 (45%), Gaps = 39/220 (17%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLH 65
L+L++++ G L V L++ L+G NG+GK+TL++I A +T P SG + +
Sbjct: 1 LQLENLTKRYGKKRALDGVSLTL-GPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRID 59
Query: 66 SSS----------RLGYLEQNPD----------LSHFSTISQYIDDTIKDTIEAPYSPYS 105
R+GYL Q L + + + +K ++
Sbjct: 60 GQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDE------ 113
Query: 106 LLKKFNL--REQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLD------FRTIH 157
+L+ NL R + +I +LS G R V + + L+ P ILI+DEPT LD FR
Sbjct: 114 VLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRN-- 171
Query: 158 WMEQELLKINSALIFVSHDRRFLETLSTTTVWLDRGCLHH 197
+ EL + + +I +H +E+L L++G L
Sbjct: 172 -LLSELGE-DRIVILSTHIVEDVESLCNQVAVLNKGKLVF 209
Score = 74.0 bits (182), Expect = 1e-13
Identities = 49/186 (26%), Positives = 87/186 (46%), Gaps = 11/186 (5%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLG 344
L+ + +TK+Y + + SL + G G++GPNGAGKTTL+++L P G I +
Sbjct: 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRID 59
Query: 345 TNLKIATIDQKREDI---------DPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLF 395
+ + R I P+ ++ +L + + E + + + +
Sbjct: 60 GQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVN 119
Query: 396 HPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQL-QG 454
D+A + LSGG + R +A+ L + LI+DEPT LD E +++L +
Sbjct: 120 LGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGED 179
Query: 455 TILIVS 460
I+I+S
Sbjct: 180 RIVILS 185
>gnl|CDD|34201 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 82.6 bits (204), Expect = 3e-16
Identities = 70/262 (26%), Positives = 111/262 (42%), Gaps = 47/262 (17%)
Query: 284 VLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL 343
++ A+ ++ R ++ SL + GE + I+GPNGAGK+TLLK L+G++ PD G +TL
Sbjct: 1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTL 60
Query: 344 -GTNLKIATIDQ--KREDIDPDKSLASYLTGSSGDSLMVR------GESRHVAGYIKDFL 394
G L ++ + + P S ++ M R E L
Sbjct: 61 NGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQAL 120
Query: 395 FHPDQAH---SLMKHLSGGEKMRAIVARVLAQPFN------FLIMDEPTNDLDF---ETL 442
D + + LSGGE+ R +ARVLAQ + +L +DEPT+ LD
Sbjct: 121 AATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHT 180
Query: 443 DFLERTITQLQGTILIVSHDRDFLDRTVTSTIAAQNIEDPNGYWIKYAGGYSDMLVQQKK 502
L R + + G +L V HD + +AAQ Y+D +V +
Sbjct: 181 LRLARQLAREGGAVLAVLHDLN---------LAAQ---------------YADRIVLLHQ 216
Query: 503 SHPTPQKKNPPAQSLQEETVKK 524
P L +ET+++
Sbjct: 217 GRVI--ASGSPQDVLTDETLER 236
Score = 65.3 bits (159), Expect = 4e-11
Identities = 52/200 (26%), Positives = 88/200 (44%), Gaps = 28/200 (14%)
Query: 5 ILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL 64
++R +++S ++ G LL V L ++P E + ++G NG+GKSTLLK +G P SG V L
Sbjct: 1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTL 60
Query: 65 HS-----------SSRLGYLEQNPDLSHFSTISQYID------DTIKDTIEAPYSPYSLL 107
+ + L QN L+ T+ + + + ++ E L
Sbjct: 61 NGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQAL 120
Query: 108 KKFNLR--EQDRIENLSVGQTRCVALMKML------ISRPDILILDEPTNHLDFR---TI 156
+L LS G+ + V L ++L + L LDEPT+ LD
Sbjct: 121 AATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHT 180
Query: 157 HWMEQELLKINSALIFVSHD 176
+ ++L + A++ V HD
Sbjct: 181 LRLARQLAREGGAVLAVLHD 200
>gnl|CDD|73060 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed..
Length = 213
Score = 82.1 bits (203), Expect = 4e-16
Identities = 56/212 (26%), Positives = 99/212 (46%), Gaps = 29/212 (13%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLH 65
+ L++++ G + L D+ L I E + L+G +G GK+T L++ AG+ EP SG +++
Sbjct: 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYI- 59
Query: 66 SSSRLGYLEQNP-DLSH-FSTISQYIDDTIKDTIEAPYSPYSLLKKFNLREQDR------ 117
+ L D++ F + Y T+ D I L+K E D
Sbjct: 60 GGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLK----LRKVPKDEIDERVREVA 115
Query: 118 ----IEN--------LSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLK 165
IE+ LS GQ + VAL + ++ P + ++DEP ++LD + M EL +
Sbjct: 116 ELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKR 175
Query: 166 INSAL----IFVSHDRRFLETLSTTTVWLDRG 193
+ L I+V+HD+ T++ ++ G
Sbjct: 176 LQQRLGTTTIYVTHDQVEAMTMADRIAVMNDG 207
Score = 81.4 bits (201), Expect = 7e-16
Identities = 52/197 (26%), Positives = 88/197 (44%), Gaps = 26/197 (13%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLG 344
+E + +TK++ + + D +L I GE + ++GP+G GKTT L+++ G +P G I +G
Sbjct: 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIG 60
Query: 345 TNLKIATIDQKREDID---------PDKS----LASYLTGSSGDSLMVRGESRHVAGY-- 389
+ + K DI P + +A L + R VA
Sbjct: 61 GRD-VTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQ 119
Query: 390 IKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD----FETLDFL 445
I+ L K LSGG++ R + R + + +MDEP ++LD + L
Sbjct: 120 IEHLL------DRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAEL 173
Query: 446 ERTITQLQGTILIVSHD 462
+R +L T + V+HD
Sbjct: 174 KRLQQRLGTTTIYVTHD 190
>gnl|CDD|34177 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 81.5 bits (201), Expect = 6e-16
Identities = 48/192 (25%), Positives = 88/192 (45%), Gaps = 18/192 (9%)
Query: 3 LPILRLDHISATIGGI--DLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSG 60
+ +L + H+S + G L+DV L+I E + ++G +G GK+TLL + AG P G
Sbjct: 1 MCMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRG 60
Query: 61 NVFLHS------SSRLGYLEQNPDLSHFSTISQYIDDTIK----DTIEAPYSPYSLLKKF 110
++ L+ + G + QN L + + + ++ + + + +L
Sbjct: 61 SIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALV 120
Query: 111 NLREQDR--IENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKI-- 166
L + I LS G + V + + L P +L+LDEP LD T M++ LL +
Sbjct: 121 GLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQ 180
Query: 167 --NSALIFVSHD 176
++ ++HD
Sbjct: 181 ETGKQVLLITHD 192
Score = 79.6 bits (196), Expect = 2e-15
Identities = 56/190 (29%), Positives = 91/190 (47%), Gaps = 13/190 (6%)
Query: 285 LEADKITKQYDD--RLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFIT 342
L ++ Y+ R ++D SL I GE + ++GP+G GKTTLL L+ G + P G I
Sbjct: 4 LNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQ 63
Query: 343 LGTNLKIATIDQKREDIDPDKSLASYLTGSSGDS--LMVRG----ESRHVAGYIKDFLFH 396
L +I +R + +++L +L + L +RG + R +A + +
Sbjct: 64 LN-GRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGL 122
Query: 397 PDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDF---ETLDFLERTITQLQ 453
H + LSGG + R +AR LA L++DEP LD E + L + Q
Sbjct: 123 EGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQET 182
Query: 454 G-TILIVSHD 462
G +L+++HD
Sbjct: 183 GKQVLLITHD 192
>gnl|CDD|73019 cd03260, ABC_PstB_phosphate_transporter, Phosphate uptake is of
fundamental importance in the cell physiology of
bacteria because phosphate is required as a nutrient.
The Pst system of E. coli comprises four distinct
subunits encoded by the pstS, pstA, pstB, and pstC
genes. The PstS protein is a phosphate-binding protein
located in the periplasmic space. P stA and PstC are
hydrophobic and they form the transmembrane portion of
the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD)..
Length = 227
Score = 81.7 bits (202), Expect = 6e-16
Identities = 56/208 (26%), Positives = 85/208 (40%), Gaps = 39/208 (18%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLG 344
+E + Y D+ +KD SL I GE ++GP+G GK+TLL+LL G G
Sbjct: 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEG 60
Query: 345 TNLKIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQAHSLM 404
+ +DI L G MV + G I D + + + H +
Sbjct: 61 E------VLLDGKDIYDLDVDVLELRRRVG---MVFQKPNPFPGSIYDNVAYGLRLHGIK 111
Query: 405 K----------------------------HLSGGEKMRAIVARVLAQPFNFLIMDEPTND 436
LSGG++ R +AR LA L++DEPT+
Sbjct: 112 LKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSA 171
Query: 437 LDFETLDFLERTITQLQG--TILIVSHD 462
LD + +E I +L+ TI+IV+H+
Sbjct: 172 LDPISTAKIEELIAELKKEYTIVIVTHN 199
Score = 77.5 bits (191), Expect = 9e-15
Identities = 56/223 (25%), Positives = 96/223 (43%), Gaps = 38/223 (17%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGI-----TEPQSG 60
+ L ++ G L+D+ L I E L+G +G GKSTLL++ + P G
Sbjct: 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEG 60
Query: 61 NVFLHSSS-------------RLGYLEQNPDLSHFSTISQYIDDTI---------KDTIE 98
V L R+G + Q P+ S I D + K E
Sbjct: 61 EVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGS-----IYDNVAYGLRLHGIKLKEE 115
Query: 99 APYSPYSLLKKFNLREQ--DRIE--NLSVGQTRCVALMKMLISRPDILILDEPTNHLDFR 154
L+K L ++ DR+ LS GQ + + L + L + P++L+LDEPT+ LD
Sbjct: 116 LDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPI 175
Query: 155 TIHWMEQELLKINS--ALIFVSHDRRFLETLSTTTVWLDRGCL 195
+ +E+ + ++ ++ V+H+ + ++ T +L G L
Sbjct: 176 STAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRL 218
>gnl|CDD|34242 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 80.8 bits (199), Expect = 9e-16
Identities = 55/202 (27%), Positives = 92/202 (45%), Gaps = 37/202 (18%)
Query: 4 PILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF 63
+L L + G +L ++ LS++ E I + G +G GKSTLLKI A + P SG +
Sbjct: 2 MLLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLL 61
Query: 64 LHSSS-----------RLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYS------- 105
++ Y Q P L DT++D + P+ +
Sbjct: 62 FEGEDVSTLKPEAYRQQVSYCAQTPAL---------FGDTVEDNLIFPWQIRNRRPDRAA 112
Query: 106 ---LLKKFNLRE---QDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWM 159
LL +F L + I LS G+ + +AL++ L P IL+LDE T+ LD +
Sbjct: 113 ALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNI 172
Query: 160 EQELLKI----NSALIFVSHDR 177
E+ + + N A+++++HD+
Sbjct: 173 EEMIHRYVREQNVAVLWITHDK 194
Score = 72.7 bits (178), Expect = 3e-13
Identities = 47/194 (24%), Positives = 85/194 (43%), Gaps = 12/194 (6%)
Query: 283 LVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFIT 342
++LE ++ D ++ + SL + GE I I GP+G GK+TLLK++ I P G +
Sbjct: 2 MLLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLL 61
Query: 343 L-GTNLKIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRH-------VAGYIKDFL 394
G ++ + R+ + + + D+L+ + R+ + F
Sbjct: 62 FEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFA 121
Query: 395 FHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETL----DFLERTIT 450
+ LSGGEK R + R L L++DE T+ LD + + R +
Sbjct: 122 LPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVR 181
Query: 451 QLQGTILIVSHDRD 464
+ +L ++HD+D
Sbjct: 182 EQNVAVLWITHDKD 195
>gnl|CDD|73005 cd03246, ABCC_Protease_Secretion, This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They
export degradative enzymes by using a type I protein
secretion system and lack an N-terminal signal peptide,
but contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family
of ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA..
Length = 173
Score = 81.0 bits (200), Expect = 1e-15
Identities = 50/185 (27%), Positives = 85/185 (45%), Gaps = 39/185 (21%)
Query: 285 LEADKITKQYDD--RLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFIT 342
LE + ++ +Y V+++ S I GE + I+GP+G+GK+TL +L+ G ++P G +
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 343 LGTNLKIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYI--KDFLFHPDQA 400
L I+ D E GY+ D LF +
Sbjct: 61 LD-GADISQWD--------------------------PNELGDHVGYLPQDDELF----S 89
Query: 401 HSLMKH-LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQ---GTI 456
S+ ++ LSGG++ R +AR L L++DEP + LD E L + I L+ T
Sbjct: 90 GSIAENILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATR 149
Query: 457 LIVSH 461
++++H
Sbjct: 150 IVIAH 154
Score = 77.9 bits (192), Expect = 8e-15
Identities = 51/193 (26%), Positives = 84/193 (43%), Gaps = 48/193 (24%)
Query: 6 LRLDHISATIGGID--LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF 63
L ++++S G + +L++V SI+P E + ++G +GSGKSTL ++ G+ P SG V
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 64 L-----------HSSSRLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNL 112
L +GYL Q+ +L +I + I
Sbjct: 61 LDGADISQWDPNELGDHVGYLPQDDEL---------FSGSIAENI--------------- 96
Query: 113 REQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINSA--- 169
LS GQ + + L + L P IL+LDEP +HLD + Q + + +A
Sbjct: 97 --------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGAT 148
Query: 170 LIFVSHDRRFLET 182
I ++H L +
Sbjct: 149 RIVIAHRPETLAS 161
>gnl|CDD|33903 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 79.5 bits (196), Expect = 2e-15
Identities = 47/214 (21%), Positives = 95/214 (44%), Gaps = 32/214 (14%)
Query: 4 PILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF 63
L ++ ++ + G + ++ + P E L+G NG+GK+T ++ G+ EP G +
Sbjct: 1 MALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEIT 60
Query: 64 L-------HSSSRLGYLEQNPDLSHFSTISQYIDDTIKDTI------------EAPYSPY 104
+R+GYL + L Y T++D + E
Sbjct: 61 WNGGPLSQEIKNRIGYLPEERGL--------YPKMTVEDQLKYLAELKGMPKAEIQKKLQ 112
Query: 105 SLLKKFNL--REQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQE 162
+ L++ + ++ +I+ LS G + + + +I P++LILDEP + LD + ++
Sbjct: 113 AWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDA 172
Query: 163 LLKIN---SALIFVSHDRRFLETLSTTTVWLDRG 193
+ ++ + +IF SH +E L + L +G
Sbjct: 173 IFELKEEGATIIFSSHRMEHVEELCDRLLMLKKG 206
Score = 72.6 bits (178), Expect = 3e-13
Identities = 56/192 (29%), Positives = 93/192 (48%), Gaps = 21/192 (10%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL- 343
LE + +TK + D+ V + S + GE G++GPNGAGKTT +++ G ++P G IT
Sbjct: 3 LEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWN 62
Query: 344 ------GTNLKIATIDQKR---EDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFL 394
+I + ++R + + L YL G M + E + + L
Sbjct: 63 GGPLSQEIKNRIGYLPEERGLYPKMTVEDQLK-YLAELKG---MPKAEIQKKLQAWLERL 118
Query: 395 FHPDQAHSLMKHLSGG--EKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQL 452
+ +K LS G +K++ I A V+ +P LI+DEP + LD ++ L+ I +L
Sbjct: 119 EIVGKKTKKIKELSKGNQQKIQFISA-VIHEP-ELLILDEPFSGLDPVNVELLKDAIFEL 176
Query: 453 Q---GTILIVSH 461
+ TI+ SH
Sbjct: 177 KEEGATIIFSSH 188
>gnl|CDD|34291 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 79.5 bits (196), Expect = 2e-15
Identities = 55/223 (24%), Positives = 96/223 (43%), Gaps = 31/223 (13%)
Query: 1 MSLPILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSG 60
M+ IL LD +S + GG L D+ S+ P E L+G NG+GK+TL+ + G T PQ G
Sbjct: 1 MNPIILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEG 60
Query: 61 NVFLHSSSRLGYLEQNPDLSH------FSTISQYIDDTIKDTIE----APYSPYSLLK-K 109
V + L L + ++ F + + + T+++ +E S ++ L +
Sbjct: 61 EVLFDGDTDLTKLPE-HRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFAR 119
Query: 110 FNLREQDRIE-----------------NLSVGQTRCVALMKMLISRPDILILDEPTNHLD 152
E+ RI+ LS GQ + + + +L P +L+LDEP +
Sbjct: 120 LRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMT 179
Query: 153 FRTIHWMEQELLKINS--ALIFVSHDRRFLETLSTTTVWLDRG 193
+ L + +++ V HD F+ ++ L G
Sbjct: 180 DAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEG 222
Score = 75.7 bits (186), Expect = 4e-14
Identities = 51/209 (24%), Positives = 87/209 (41%), Gaps = 22/209 (10%)
Query: 282 KLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFI 341
++L D ++ + + D S + GE ++GPNGAGKTTL+ ++TGK +P G +
Sbjct: 3 PIILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEV 62
Query: 342 TLGTNLKIATIDQKR----------------EDIDPDKSLASYLTGSSG--DSLMVR--G 381
+ + + + R E++ ++L L SL R
Sbjct: 63 LFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRA 122
Query: 382 ESRHVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFET 441
E R + + D+ L LS G+K + +LAQ L++DEP +
Sbjct: 123 EERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAE 182
Query: 442 LDFLERTITQLQG--TILIVSHDRDFLDR 468
+ + L G +IL+V HD F+
Sbjct: 183 TEKTAELLKSLAGKHSILVVEHDMGFVRE 211
>gnl|CDD|72974 cd03215, ABC_Carb_Monos_II, This family represents domain II of the
carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses (such as xylose, arabinose, and ribose), that
cannot be broken down to simple sugars by hydrolysis.
In members of Carb_Monos family the single hydrophobic
gene product forms a homodimer, while the ABC protein
represents a fusion of two nucleotide-binding domains.
However, it is assumed that two copies of the ABC
domains are present in the assembled transporter..
Length = 182
Score = 79.3 bits (196), Expect = 2e-15
Identities = 53/190 (27%), Positives = 84/190 (44%), Gaps = 27/190 (14%)
Query: 281 GKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGF 340
G+ VLE ++ + V+D S + GE +GI G G G+T L + L G P G
Sbjct: 1 GEPVLEVRGLSV----KGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGE 56
Query: 341 ITL-GTNLKIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQ 399
ITL G + + ++ +Y+ E R G + D +
Sbjct: 57 ITLDGKPVTRRSPRDAI------RAGIAYVP-----------EDRKREGLVLDLSV--AE 97
Query: 400 AHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQL--QGT-I 456
+L LSGG + + ++AR LA+ LI+DEPT +D + R I +L G +
Sbjct: 98 NIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAV 157
Query: 457 LIVSHDRDFL 466
L++S + D L
Sbjct: 158 LLISSELDEL 167
Score = 56.6 bits (137), Expect = 2e-08
Identities = 41/182 (22%), Positives = 73/182 (40%), Gaps = 30/182 (16%)
Query: 4 PILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF 63
P+L + +S ++DV ++ E + + G G+G++ L + G+ P SG +
Sbjct: 3 PVLEVRGLS----VKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEIT 58
Query: 64 LHSSSRLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSP-----YSLLKKFNLREQDRI 118
L + I I Y P L+ ++ E +
Sbjct: 59 LDGKPV-----------TRRSPRDAIRAGIA------YVPEDRKREGLVLDLSVAENIAL 101
Query: 119 EN-LSVGQTRCVALMKMLISRPDILILDEPTNHLDF---RTIHWMEQELLKINSALIFVS 174
+ LS G + V L + L P +LILDEPT +D I+ + +EL A++ +S
Sbjct: 102 SSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLIS 161
Query: 175 HD 176
+
Sbjct: 162 SE 163
>gnl|CDD|73006 cd03247, ABCC_cytochrome_bd, The CYD subfamily implicated in
cytochrome bd biogenesis. The CydC and CydD proteins
are important for the formation of cytochrome bd
terminal oxidase of E. coli and it has been proposed
that they were necessary for biosynthesis of the
cytochrome bd quinol oxidase and for periplasmic c-type
cytochromes. CydCD were proposed to determine a
heterooligomeric complex important for heme export into
the periplasm or to be involved in the maintenance of
the proper redox state of the periplasmic space. In
Bacillus subtilius, the absence of CydCD does not affect
the presence of halo-cytochrome c in the membrane and
this observation suggests that CydCD proteins are not
involved in the export of heme in this organism..
Length = 178
Score = 79.1 bits (195), Expect = 3e-15
Identities = 53/181 (29%), Positives = 86/181 (47%), Gaps = 30/181 (16%)
Query: 285 LEADKITKQYD--DRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFIT 342
L + ++ Y ++ V+K+ SL + GE I ++G +G+GK+TLL+LLTG +KP G IT
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 343 LGTNLKIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQAHS 402
L D S L + + V + + LF ++
Sbjct: 61 L------------------DGVPVSDLEKALSSLISVLNQRPY--------LFDTTLRNN 94
Query: 403 LMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFET-LDFLERTITQLQG-TILIVS 460
L + SGGE+ R +AR+L Q +++DEPT LD T L L+ T++ ++
Sbjct: 95 LGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWIT 154
Query: 461 H 461
H
Sbjct: 155 H 155
Score = 69.9 bits (171), Expect = 2e-12
Identities = 47/181 (25%), Positives = 87/181 (48%), Gaps = 37/181 (20%)
Query: 6 LRLDHISATIGGID--LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF 63
L ++++S + + +L+++ L +K E+I L+G +GSGKSTLL++ G +PQ G +
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 64 LHSSSRLGYLEQNPDLSHFSTISQYI---DDTIKDTIEAPYSPYSLLKKFNLREQDRIEN 120
L + L S ++Q D T+++ +
Sbjct: 61 LDGVPVSDLEKALSSL--ISVLNQRPYLFDTTLRNNLGRR-------------------- 98
Query: 121 LSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKI------NSALIFVS 174
S G+ + +AL ++L+ I++LDEPT LD T E++LL + + LI+++
Sbjct: 99 FSGGERQRLALARILLQDAPIVLLDEPTVGLDPIT----ERQLLSLIFEVLKDKTLIWIT 154
Query: 175 H 175
H
Sbjct: 155 H 155
>gnl|CDD|34199 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 78.8 bits (194), Expect = 4e-15
Identities = 60/240 (25%), Positives = 101/240 (42%), Gaps = 32/240 (13%)
Query: 5 ILRLDHISATIGGI-DLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF 63
+L + ++ + G ++DV + E L+G NG+GK+TLL++ A + P SG V
Sbjct: 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVT 60
Query: 64 LHSSS----------RLGYL-EQNP---------DLSHFSTISQYIDDTIKDTIEAPYSP 103
+ ++G L + +L +F+ ++ IK I
Sbjct: 61 IDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIA----- 115
Query: 104 YSLLKKFNLRE--QDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDF---RTIHW 158
L K+ L E R+ S G + VA+ + L+ P IL+LDEPT+ LD R H
Sbjct: 116 -ELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHD 174
Query: 159 MEQELLKINSALIFVSHDRRFLETLSTTTVWLDRGCLHHLDQGFAYFESWKKNILQQEQI 218
++L A+IF SH + +E L + L +G + A L++
Sbjct: 175 FIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTVLRNLEEIFA 234
Score = 71.1 bits (174), Expect = 9e-13
Identities = 57/200 (28%), Positives = 85/200 (42%), Gaps = 29/200 (14%)
Query: 284 VLEADKITKQYDDRL-VVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFIT 342
+LE +TK Y ++ V+D S GE G++G NGAGKTTLL+++ + PD G +T
Sbjct: 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVT 60
Query: 343 LGTNLKIATIDQKREDIDPDKSLASYLTGSSG--DSLMVR----------GESRH----- 385
I +D R+ + + L G G L R G SR
Sbjct: 61 ------IDGVDTVRDPSFVRRKI-GVLFGERGLYARLTARENLKYFARLNGLSRKEIKAR 113
Query: 386 VAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFL 445
+A K + + S G K + +AR L + L++DEPT+ LD T
Sbjct: 114 IAELSKRLQLL-EYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKF 172
Query: 446 ERTITQLQG---TILIVSHD 462
I QL+ ++ SH
Sbjct: 173 HDFIKQLKNEGRAVIFSSHI 192
>gnl|CDD|33919 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 78.4 bits (193), Expect = 5e-15
Identities = 58/207 (28%), Positives = 101/207 (48%), Gaps = 29/207 (14%)
Query: 1 MSLPILRLDHISATIGG----IDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITE 56
+ I+ + H+S T+G + +L+ V L +K E + +VG +GSGKSTLL + AG+ +
Sbjct: 2 PAENIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD 61
Query: 57 PQSGNVFLHS---------------SSRLGYLEQN----PDLSHFSTISQYIDDTIKDTI 97
P SG V L + +G++ Q+ P+L+ ++ ++ + +
Sbjct: 62 PSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSA 121
Query: 98 EAPYSPYSLLKKFNL--REQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRT 155
++ +LL+ L R LS G+ + VAL + RPD+L DEPT +LD T
Sbjct: 122 DSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRAT 181
Query: 156 IHWMEQELLKIN----SALIFVSHDRR 178
+ L +N + L+ V+HD +
Sbjct: 182 GDKIADLLFALNRERGTTLVLVTHDPQ 208
Score = 69.2 bits (169), Expect = 3e-12
Identities = 55/193 (28%), Positives = 82/193 (42%), Gaps = 28/193 (14%)
Query: 299 VVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-GTNL---------- 347
++K L + GE + IVGP+G+GK+TLL +L G P G + L G L
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84
Query: 348 ----KIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGE----SRHVAGYIKDFLFHPDQ 399
+ + Q I +L + L +RGE SR A + + + +
Sbjct: 85 LRARHVGFVFQSFHLIPNLTALENVAL-----PLELRGESSADSRAGAKALLEAVGLGKR 139
Query: 400 AHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFET----LDFLERTITQLQGT 455
LSGGE+ R +AR A + L DEPT +LD T D L + T
Sbjct: 140 LTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTT 199
Query: 456 ILIVSHDRDFLDR 468
+++V+HD R
Sbjct: 200 LVLVTHDPQLAAR 212
>gnl|CDD|31327 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 78.2 bits (192), Expect = 7e-15
Identities = 57/194 (29%), Positives = 98/194 (50%), Gaps = 17/194 (8%)
Query: 285 LEADKITKQYD-DRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL 343
+E + ++ Y + V+KD S I GE + IVGP+G+GK+TL+KLL P G I +
Sbjct: 329 IEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI 388
Query: 344 -GTNLKIATIDQKREDI-----DP---DKSLASYLTGSSGDSLMVRGESRHVAGYIKDFL 394
G +++ ++D R+ I DP ++ + D+ E +F+
Sbjct: 389 DGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFI 448
Query: 395 FH-PDQAHSLM----KHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTI 449
+ PD +++ +LSGG++ R +AR L + LI+DE T+ LD ET ++ +
Sbjct: 449 ANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDAL 508
Query: 450 TQLQG--TILIVSH 461
+L T LI++H
Sbjct: 509 KKLLKGRTTLIIAH 522
Score = 76.3 bits (187), Expect = 3e-14
Identities = 53/194 (27%), Positives = 94/194 (48%), Gaps = 24/194 (12%)
Query: 6 LRLDHISATIGG-IDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL 64
+ +++S + G +L+D+ SI+P E++ +VG +GSGKSTL+K+ + +P SG + +
Sbjct: 329 IEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI 388
Query: 65 HSS-----------SRLGYLEQNPDL---SHFSTISQYIDDTIKDTIEAPYSPY------ 104
R+G + Q+P L + I+ D + IE
Sbjct: 389 DGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFI 448
Query: 105 -SLLKKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQEL 163
+L ++ +R NLS GQ + +A+ + L+ P ILILDE T+ LD T ++ L
Sbjct: 449 ANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDAL 508
Query: 164 LKI--NSALIFVSH 175
K+ + ++H
Sbjct: 509 KKLLKGRTTLIIAH 522
>gnl|CDD|34241 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 77.6 bits (191), Expect = 9e-15
Identities = 61/221 (27%), Positives = 97/221 (43%), Gaps = 45/221 (20%)
Query: 272 THLQTTQSSGKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLT 331
+ G L +E + ++K S + GE +GI+GP+G+GK+TL +LL
Sbjct: 324 ERMPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLV 383
Query: 332 GKIKPDCGFITL-GTNLK------------------------IA-TIDQKREDIDPDKSL 365
G P G + L G +L+ IA I + E+ DP+K +
Sbjct: 384 GIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVI 443
Query: 366 -ASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVL-AQ 423
A+ L G L++R GY D A LSGG++ R +AR L
Sbjct: 444 EAARLAGV--HELILRLPQ----GY--DTRIGEGGA-----TLSGGQRQRIALARALYGD 490
Query: 424 PFNFLIMDEPTNDLDFETLDFLERTITQLQ---GTILIVSH 461
PF +++DEP ++LD E L I + GT+++++H
Sbjct: 491 PF-LVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAH 530
Score = 74.9 bits (184), Expect = 6e-14
Identities = 52/181 (28%), Positives = 88/181 (48%), Gaps = 31/181 (17%)
Query: 1 MSLP----ILRLDHISATIGGID--LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGI 54
M LP L ++ ++A G +L+ + +++ E + ++G +GSGKSTL ++ GI
Sbjct: 326 MPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGI 385
Query: 55 TEPQSGNVFLHSSS-----------RLGYLEQNPDLSHFS-TISQYI-----DDTIKDTI 97
P SG+V L + +GYL Q+ +L F TI++ I + + I
Sbjct: 386 WPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVEL--FDGTIAENIARFGEEADPEKVI 443
Query: 98 EAPYSP--YSLLKKFNLREQDRI----ENLSVGQTRCVALMKMLISRPDILILDEPTNHL 151
EA + L+ + RI LS GQ + +AL + L P +++LDEP ++L
Sbjct: 444 EAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNL 503
Query: 152 D 152
D
Sbjct: 504 D 504
>gnl|CDD|72996 cd03237, ABC_RNaseL_inhibitor_domain2, The ATPase domain 2 of RNase
L inhibitor. The ABC ATPase, RNase L inhibitor (RLI),
is a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains which are
arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity of more than 48%. The high degree of
evolutionary conservation suggests that RLI performs a
central role in archaeal and eukaryotic physiology..
Length = 246
Score = 77.3 bits (190), Expect = 1e-14
Identities = 52/174 (29%), Positives = 81/174 (46%), Gaps = 23/174 (13%)
Query: 302 DFSLRIHYG-----ECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKR 356
+F+L + G E IGI+GPNG GKTT +K+L G +KPD G +++ T+ K
Sbjct: 12 EFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEG----DIEIELDTVSYKP 67
Query: 357 EDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQAHSLMKH----LSGGEK 412
+ I D G+ D L + + Y K + P Q ++ LSGGE
Sbjct: 68 QYIKADY------EGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGEL 121
Query: 413 MRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQL----QGTILIVSHD 462
R +A L++ + ++DEP+ LD E + I + + T +V HD
Sbjct: 122 QRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHD 175
Score = 58.8 bits (142), Expect = 4e-09
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 3/128 (2%)
Query: 27 SIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGYLEQNPDLSHFSTIS 86
SI E I ++G NG GK+T +K+ AG+ +P G++ + + Y Q + T+
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEI-ELDTVSYKPQYIKADYEGTVR 79
Query: 87 QYIDDTIKDTIEAPYSPYSLLKKFNLRE--QDRIENLSVGQTRCVALMKMLISRPDILIL 144
+ KD PY + K + + + LS G+ + VA+ L DI +L
Sbjct: 80 DLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLL 139
Query: 145 DEPTNHLD 152
DEP+ +LD
Sbjct: 140 DEPSAYLD 147
>gnl|CDD|33864 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 76.9 bits (189), Expect = 1e-14
Identities = 61/212 (28%), Positives = 100/212 (47%), Gaps = 29/212 (13%)
Query: 279 SSGKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDC 338
K +L ++K Y +D S ++ GE +GIVG +G+GKTTLLK ++G++ PD
Sbjct: 1 MMDKPLLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDA 60
Query: 339 GFITL----GTNLKIATIDQ-KREDI----------DPDKSLASYLT--GSSGDSLMVRG 381
G +T G + T+ + +R + +P L ++ G+ G+ LM G
Sbjct: 61 GTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIG 120
Query: 382 ESRH-------VAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPT 434
+RH ++++ D+ L + SGG + R +AR L + MDEPT
Sbjct: 121 -ARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPT 179
Query: 435 NDLDFET----LDFLERTITQLQGTILIVSHD 462
LD LD L + +L ++IV+HD
Sbjct: 180 GGLDVSVQARLLDLLRGLVRELGLAVVIVTHD 211
Score = 60.3 bits (146), Expect = 2e-09
Identities = 52/238 (21%), Positives = 92/238 (38%), Gaps = 56/238 (23%)
Query: 1 MSLPILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSG 60
M P+L + +S G +DV + P E + +VG +GSGK+TLLK +G P +G
Sbjct: 2 MDKPLLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAG 61
Query: 61 NVFLHSSSR--------------------LGYLEQNP------DLS-------------- 80
V G++ QNP +S
Sbjct: 62 TVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGA 121
Query: 81 -HFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLREQDRIENLSVGQTRCVALMKMLISRP 139
H+ I D +++ +E R D S G + + + + L++RP
Sbjct: 122 RHYGNIRAEAQDWLEE-VEIDLD----------RIDDLPRTFSGGMQQRLQIARNLVTRP 170
Query: 140 DILILDEPTNHLDF----RTIHWMEQELLKINSALIFVSHDRRFLETLSTTTVWLDRG 193
++ +DEPT LD R + + + ++ A++ V+HD L+ + + +G
Sbjct: 171 RLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQG 228
>gnl|CDD|33889 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 76.9 bits (189), Expect = 2e-14
Identities = 44/171 (25%), Positives = 70/171 (40%), Gaps = 31/171 (18%)
Query: 4 PILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF 63
+L +++S G L D+ ++ E + + G NG+GK+TLL+I AG+ P +G V+
Sbjct: 1 MMLEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVY 60
Query: 64 LHSS----------SRLGYLEQNP----------DLSHFSTISQYIDDTIKDTIEAPYSP 103
L YL P +L + + +
Sbjct: 61 WQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAA---------TI 111
Query: 104 YSLLKKFNL--REQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLD 152
+ L + L E + LS GQ R VAL ++ +S + ILDEP LD
Sbjct: 112 WEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALD 162
Score = 74.2 bits (182), Expect = 1e-13
Identities = 49/193 (25%), Positives = 80/193 (41%), Gaps = 21/193 (10%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLG 344
LEA+ ++ + +R + D S ++ GE + I GPNGAGKTTLL++L G ++PD G +
Sbjct: 3 LEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEV--- 59
Query: 345 TNLKIATIDQKREDIDPDKSLASYLTGSSGDSLMVR------------GESRHVAGYIKD 392
+ I RE + G + L G + + +
Sbjct: 60 -YWQGEPIQNVRESYHQALLYLGHQPGIKTE-LTALENLHFWQRFHGSGNAATIWEALAQ 117
Query: 393 FLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTI--- 449
+ LS G++ R +AR+ P I+DEP LD E + L +
Sbjct: 118 VGLA-GLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAH 176
Query: 450 TQLQGTILIVSHD 462
G +L+ +H
Sbjct: 177 AAQGGIVLLTTHQ 189
>gnl|CDD|73017 cd03258, ABC_MetN_methionine_transporter, MetN (also known as YusC)
is an ABC-type transporter encoded by metN of the metNPQ
operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate
binding protein. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 233
Score = 76.7 bits (189), Expect = 2e-14
Identities = 56/208 (26%), Positives = 95/208 (45%), Gaps = 33/208 (15%)
Query: 284 VLEADKITKQYDDR----LVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCG 339
++E ++K + D +KD SL + GE GI+G +GAGK+TL++ + G +P G
Sbjct: 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSG 60
Query: 340 FITL-GTNL-------------KIATIDQK-----REDIDPDKSLASYLTGSSGDSLMVR 380
+ + GT+L +I I Q + + +L + G + R
Sbjct: 61 SVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEER 120
Query: 381 GESRHVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFE 440
+ + + D+A + LSGG+K R +AR LA L+ DE T+ LD E
Sbjct: 121 VLE------LLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPE 174
Query: 441 T----LDFLERTITQLQGTILIVSHDRD 464
T L L +L TI++++H+ +
Sbjct: 175 TTQSILALLRDINRELGLTIVLITHEME 202
Score = 69.8 bits (171), Expect = 2e-12
Identities = 50/217 (23%), Positives = 95/217 (43%), Gaps = 28/217 (12%)
Query: 5 ILRLDHISATIGG----IDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSG 60
++ L ++S G + L+DV LS+ E ++G +G+GKSTL++ G+ P SG
Sbjct: 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSG 60
Query: 61 NVFLHS--------------SSRLGYLEQNPDLSHFSTISQYIDDTIK----DTIEAPYS 102
+V + R+G + Q+ +L T+ + + ++ E
Sbjct: 61 SVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEER 120
Query: 103 PYSLLKKFNL--REQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWME 160
LL+ L + LS GQ + V + + L + P +L+ DE T+ LD T +
Sbjct: 121 VLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSIL 180
Query: 161 QELLKINSAL----IFVSHDRRFLETLSTTTVWLDRG 193
L IN L + ++H+ ++ + +++G
Sbjct: 181 ALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKG 217
>gnl|CDD|72982 cd03223, ABCD_peroxisomal_ALDP, Peroxisomal ATP-binding cassette
transporter (Pat) is involved in the import of very
long-chain fatty acids (VLCFA) into the peroxisome. The
peroxisomal membrane forms a permeability barrier for a
wide variety of metabolites required for and formed
during fatty acid beta-oxidation. To communicate with
the cytoplasm and mitochondria, peroxisomes need
dedicated proteins to transport such hydrophilic
molecules across their membranes. X-linked
adrenoleukodystrophy (X-ALD) is caused by mutations in
the ALD gene, which encodes ALDP (adrenoleukodystrophy
protein ), a peroxisomal integral membrane protein that
is a member of the ATP-binding cassette (ABC)
transporter protein family. The disease is
characterized by a striking and unpredictable variation
in phenotypic expression. Phenotypes include the
rapidly progressive childhood cerebral form (CCALD), the
milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic)..
Length = 166
Score = 76.3 bits (188), Expect = 2e-14
Identities = 50/188 (26%), Positives = 88/188 (46%), Gaps = 27/188 (14%)
Query: 6 LRLDHIS-ATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL 64
+ L+++S AT G LL+D+ IKP +R+ + G +G+GKS+L + AG+ SG + +
Sbjct: 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM 60
Query: 65 HSSSRLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLREQDRIENLSVG 124
L +L Q P L T+++ + P+ + LS G
Sbjct: 61 PEGEDLLFLPQRPYLP---------LGTLREQLIYPWD----------------DVLSGG 95
Query: 125 QTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINSALIFVSHDRRFLETLS 184
+ + +A ++L+ +P + LDE T+ LD + + Q L ++ +I V H R L
Sbjct: 96 EQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGH-RPSLWKFH 154
Query: 185 TTTVWLDR 192
+ LD
Sbjct: 155 DRVLDLDG 162
Score = 67.1 bits (164), Expect = 1e-11
Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 32/167 (19%)
Query: 295 DDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQ 354
D R+++KD S I G+ + I GP+G GK++L + L G G I + + + Q
Sbjct: 12 DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQ 71
Query: 355 KREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQAHSLMKHLSGGEKMR 414
+ YL G +++ L +P LSGGE+ R
Sbjct: 72 R-----------PYLP----------------LGTLREQLIYP-----WDDVLSGGEQQR 99
Query: 415 AIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQGTILIVSH 461
AR+L F+ +DE T+ LD E+ D L + + +L T++ V H
Sbjct: 100 LAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGH 146
>gnl|CDD|30793 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 76.0 bits (187), Expect = 3e-14
Identities = 49/199 (24%), Positives = 76/199 (38%), Gaps = 39/199 (19%)
Query: 16 GGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQ-----SGNVFLHSS--- 67
G + + V +K E + +VG +GSGKS L K G+ G +
Sbjct: 16 GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLL 75
Query: 68 ------------SRLGYLEQNP--DLSHFSTISQYIDDTIK------DTIEAPYSPYSLL 107
+ + Q+P L+ TI I + ++ EA LL
Sbjct: 76 SLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELL 135
Query: 108 KKFNLREQDRIEN-----LSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQE 162
+ + + +R LS G + V + L P +LI DEPT LD T+ +
Sbjct: 136 ELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALD-VTVQAQILD 194
Query: 163 LLK-----INSALIFVSHD 176
LLK +ALI ++HD
Sbjct: 195 LLKELQREKGTALILITHD 213
Score = 68.7 bits (168), Expect = 5e-12
Identities = 52/199 (26%), Positives = 81/199 (40%), Gaps = 40/199 (20%)
Query: 299 VVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFIT------LGTNL----- 347
V S + GE +GIVG +G+GK+ L K + G + I G +L
Sbjct: 20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79
Query: 348 ---------KIATIDQKREDIDPDKSLASYLT--------GSSGDSLMVRGESRHVAGYI 390
+IA I Q DP SL +T + + E++ A +
Sbjct: 80 KELRKIRGKEIAMIFQ-----DPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIEL 134
Query: 391 KDFLFHPDQAHSLMKH---LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD----FETLD 443
+ + PD L + LSGG + R ++A LA LI DEPT LD + LD
Sbjct: 135 LELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILD 194
Query: 444 FLERTITQLQGTILIVSHD 462
L+ + +++++HD
Sbjct: 195 LLKELQREKGTALILITHD 213
>gnl|CDD|35282 KOG0059, KOG0059, KOG0059, Lipid exporter ABCA1 and related
proteins, ABC superfamily [Lipid transport and
metabolism, General function prediction only].
Length = 885
Score = 75.1 bits (184), Expect = 5e-14
Identities = 55/215 (25%), Positives = 89/215 (41%), Gaps = 26/215 (12%)
Query: 3 LPILRLDHISATIGGIDL-LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGN 61
L L+++S GG D ++ + ++ P E L+G NG+GK+T K+ G T+P SG
Sbjct: 562 SSALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGE 621
Query: 62 VFLHSSS------------RLGYLEQ----NPDLSHFSTISQY--IDDTIKDTIEAPYSP 103
+ +LGY Q +L+ + Y + + I +
Sbjct: 622 ALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEK 681
Query: 104 YSLLKKFNLREQ--DRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDF---RTIHW 158
LL+ L ++ S G R ++ LI P +++LDEP+ LD R +
Sbjct: 682 --LLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWD 739
Query: 159 MEQELLKINSALIFVSHDRRFLETLSTTTVWLDRG 193
+ L K A+I SH E L T T + G
Sbjct: 740 IIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIG 774
Score = 71.6 bits (175), Expect = 6e-13
Identities = 59/253 (23%), Positives = 104/253 (41%), Gaps = 22/253 (8%)
Query: 241 RRKRNVRRVKELHEIQKQLQEQKKSFHSTIQTHLQ-TTQSSGKLVLEADKITKQYDDR-L 298
++R + + + + ++ +K +SS L + ++K Y +
Sbjct: 520 FKRRMRALTQNMLKGFEPVEVEKLDVARERNRVETLLFRSSYSSALVLNNLSKVYGGKDG 579
Query: 299 VVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKRED 358
V+ S + GEC G++G NGAGKTT K+LTG+ KP G + + T+ +
Sbjct: 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGH--DITVSTDFQQ 637
Query: 359 I------DPDK-SLASYLTGSSGDSL--MVRGESRH-----VAGYIKDFLFHPDQAHSLM 404
+ P +L LTG +RG R + ++ P A+ +
Sbjct: 638 VRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGP-YANKQV 696
Query: 405 KHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQ---GTILIVSH 461
+ SGG K R A L + +++DEP+ LD + L I +L+ I++ SH
Sbjct: 697 RTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSH 756
Query: 462 DRDFLDRTVTSTI 474
+ + T T
Sbjct: 757 SMEEAEALCTRTA 769
>gnl|CDD|72993 cd03234, ABCG_White, The White subfamily represents ABC
transporters homologous to the Drosophila white gene,
which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners..
Length = 226
Score = 75.3 bits (185), Expect = 5e-14
Identities = 51/199 (25%), Positives = 82/199 (41%), Gaps = 16/199 (8%)
Query: 278 QSSGKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPD 337
Q K ++ D SL + G+ + I+G +G+GKTTLL ++G+++
Sbjct: 1 QRVLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGG 60
Query: 338 ---CGFITL-GTNLKIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGES-RHVAGYIKD 392
G I G K + + D L LT + R + I+
Sbjct: 61 GTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRK 120
Query: 393 F---------LFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLD 443
L +L+K +SGGE+ R +A L LI+DEPT+ LD T
Sbjct: 121 KRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTAL 180
Query: 444 FLERTITQL--QGTILIVS 460
L T++QL + I+I++
Sbjct: 181 NLVSTLSQLARRNRIVILT 199
Score = 63.3 bits (154), Expect = 2e-10
Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 21/160 (13%)
Query: 19 DLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQ---SGNVFLHSS-------- 67
+L DV L ++ + + ++G +GSGK+TLL +G E SG + +
Sbjct: 21 RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQ 80
Query: 68 SRLGYLEQNPDLSHFSTISQYIDDTI--------KDTIEAPYSPYSLLKKFNLRE--QDR 117
+ Y+ Q+ L T+ + + T D I LL+ L +
Sbjct: 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL 140
Query: 118 IENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIH 157
++ +S G+ R V++ L+ P +LILDEPT+ LD T
Sbjct: 141 VKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTAL 180
>gnl|CDD|35277 KOG0054, KOG0054, KOG0054, Multidrug resistance-associated
protein/mitoxantrone resistance protein, ABC superfamily
[Secondary metabolites biosynthesis, transport and
catabolism].
Length = 1381
Score = 74.9 bits (184), Expect = 6e-14
Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 24/157 (15%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF----------LHS-SSR 69
L+ + +IKP E++ +VG G+GKS+L+ + EP G + LH SR
Sbjct: 1156 LKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSR 1215
Query: 70 LGYLEQNPDLSHFS-TI-------SQYIDDTIKDTIE-APYSPY--SLLKKFNLREQDRI 118
L + Q+P L FS T+ +Y DD I + +E SL + +
Sbjct: 1216 LSIIPQDPVL--FSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGG 1273
Query: 119 ENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRT 155
EN SVGQ + + L + L+ + IL+LDE T +D T
Sbjct: 1274 ENFSVGQRQLLCLARALLRKSKILVLDEATASVDPET 1310
Score = 68.8 bits (168), Expect = 4e-12
Identities = 66/278 (23%), Positives = 122/278 (43%), Gaps = 37/278 (13%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGYLEQNPDLS 80
L+D+ IK + + +VG GSGKS+LL G SG+V ++ S + Y+ Q P +
Sbjct: 537 LKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS--VAYVPQQPWIQ 594
Query: 81 HFSTISQYIDDTIKDTI--EAPYSPY---------SLLKKFN-LREQDRIE------NLS 122
+ T+++ I +PY +L K L D E NLS
Sbjct: 595 N---------GTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLS 645
Query: 123 VGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKI---NSALIFVSHDRRF 179
GQ + ++L + + DI +LD+P + +D + +E ++ +I V+H +F
Sbjct: 646 GGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQF 705
Query: 180 LETLSTTTVWLDRGCLHHLDQGFAYFESWKKNILQQEQIRYHNLKKKNEAEKEWLRYGVT 239
L V L G + ++ G Y E K E +++ EA ++ L G +
Sbjct: 706 LPHADQIIV-LKDGKI--VESG-TYEELLKSGGDFAELAHEEESEQEEEASEKDLESGES 761
Query: 240 ARRKRNVRRVKELHEIQKQLQEQKKSFHSTIQTHLQTT 277
+R + R ++ L +++ +++K+ +Q + T
Sbjct: 762 SRESES-RSLESLSSEEEKSKDEKEEEDKLVQEEERET 798
Score = 62.2 bits (151), Expect = 5e-10
Identities = 48/191 (25%), Positives = 81/191 (42%), Gaps = 35/191 (18%)
Query: 297 RLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-GTNL-------- 347
LV+K S I GE +GIVG GAGK++L+ L ++P G I + G ++
Sbjct: 1153 PLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDL 1212
Query: 348 --KIATIDQK--------REDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHP 397
+++ I Q R ++DP S D + E + + P
Sbjct: 1213 RSRLSIIPQDPVLFSGTVRFNLDP-------FDEYSDDEIWEALERCQLKDVVSSL---P 1262
Query: 398 DQAHSLMKH----LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQL- 452
S + S G++ +AR L + L++DE T +D ET +++TI +
Sbjct: 1263 GGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF 1322
Query: 453 -QGTILIVSHD 462
T+L ++H
Sbjct: 1323 KDCTVLTIAHR 1333
Score = 54.9 bits (132), Expect = 7e-08
Identities = 65/292 (22%), Positives = 117/292 (40%), Gaps = 49/292 (16%)
Query: 295 DDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQ 354
+KD + I G+ + +VGP G+GK++LL + G++ G + + N +A + Q
Sbjct: 532 SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAV--NGSVAYVPQ 589
Query: 355 K--------REDIDPDKSLASYLTGSSGDSLMVRGESR-----HVAGYIKDF--LFHPDQ 399
+ RE+I L GS D E R KD L D
Sbjct: 590 QPWIQNGTVRENI---------LFGSPYD------EERYDKVIKACALKKDLEILPFGDL 634
Query: 400 AHSLMK--HLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFET-LDFLERTITQLQG-- 454
+ +LSGG+K R +AR + Q + ++D+P + +D E I L
Sbjct: 635 TEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGK 694
Query: 455 TILIVSHDRDFLDRTVTSTIAAQNIEDPNGYWIKYAGGYSDMLVQQKKSHPTPQKKNPPA 514
T+++V+H FL I ++ + I +G Y ++L +
Sbjct: 695 TVILVTHQLQFL-PHADQIIVLKDGK------IVESGTYEELL-----KSGGDFAELAHE 742
Query: 515 QSLQEETVKKEKKQKRKNRLSYSQKLLLERLPQEIHKIQLKITEKEQQINDQ 566
+ ++E EK + S+ LE L E K + + E+++ + ++
Sbjct: 743 EESEQEEEASEKDLESGESSRESESRSLESLSSEEEKSKDEKEEEDKLVQEE 794
>gnl|CDD|73003 cd03244, ABCC_MRP_domain2, Domain 2 of the ABC subfamily C. This
family is also known as MRP (mulrtidrug
resisitance-associated protein). Some of the MRP
members have five additional transmembrane segments in
their N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate..
Length = 221
Score = 74.7 bits (184), Expect = 7e-14
Identities = 59/200 (29%), Positives = 99/200 (49%), Gaps = 33/200 (16%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF----------LHS-SSR 69
L+++ SIKP E++ +VG GSGKS+LL + E SG++ LH SR
Sbjct: 20 LKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79
Query: 70 LGYLEQNPDLSHFS-TI-------SQYIDDTIKDTIEAPYSP---YSLLKKFNLREQDRI 118
+ + Q+P L FS TI +Y D+ + +E SL + ++
Sbjct: 80 ISIIPQDPVL--FSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGG 137
Query: 119 ENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLK---INSALIFVSH 175
ENLSVGQ + + L + L+ + IL+LDE T +D T + Q+ ++ + ++ ++H
Sbjct: 138 ENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALI-QKTIREAFKDCTVLTIAH 196
Query: 176 DRRFLETL--STTTVWLDRG 193
L+T+ S + LD+G
Sbjct: 197 R---LDTIIDSDRILVLDKG 213
Score = 64.3 bits (157), Expect = 9e-11
Identities = 47/186 (25%), Positives = 83/186 (44%), Gaps = 29/186 (15%)
Query: 298 LVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-GTNL--------- 347
V+K+ S I GE +GIVG G+GK++LL L ++ G I + G ++
Sbjct: 18 PVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLR 77
Query: 348 -KIATIDQK--------REDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPD 398
+I+ I Q R ++DP S + L E + +++ D
Sbjct: 78 SRISIIPQDPVLFSGTIRSNLDP-------FGEYSDEELWQALERVGLKEFVESLPGGLD 130
Query: 399 QAHSLM-KHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTI-TQLQG-T 455
++LS G++ +AR L + L++DE T +D ET +++TI + T
Sbjct: 131 TVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCT 190
Query: 456 ILIVSH 461
+L ++H
Sbjct: 191 VLTIAH 196
>gnl|CDD|73056 cd03297, ABC_ModC_molybdenum_transporter, ModC is an ABC-type
transporter and the ATPase component of a molybdate
transport system that also includes the periplasmic
binding protein ModA and the membrane protein ModB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 214
Score = 74.1 bits (182), Expect = 1e-13
Identities = 55/188 (29%), Positives = 82/188 (43%), Gaps = 33/188 (17%)
Query: 301 KDFSLRIHY---GECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLG------TNLKIAT 351
DF+L+I + E GI G +GAGK+TLL+ + G KPD G I L + KI
Sbjct: 11 PDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINL 70
Query: 352 IDQKRE------------DIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLF-HPD 398
Q+R+ ++ ++LA L + + + L +P
Sbjct: 71 PPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPA 130
Query: 399 QAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFET----LDFLERTITQLQG 454
Q LSGGEK R +AR LA L++DEP + LD L L++ L
Sbjct: 131 Q-------LSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNI 183
Query: 455 TILIVSHD 462
++ V+HD
Sbjct: 184 PVIFVTHD 191
Score = 74.1 bits (182), Expect = 1e-13
Identities = 52/191 (27%), Positives = 82/191 (42%), Gaps = 23/191 (12%)
Query: 30 PKERICLVGCNGSGKSTLLKIAAGITEPQSG--------------NVFLHSSSR-LGYLE 74
+E + G +G+GKSTLL+ AG+ +P G + L R +G +
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 75 QNPDLSHFSTISQYIDDTIKDTIEAP--YSPYSLLKKFNLRE--QDRIENLSVGQTRCVA 130
Q L + + + +K S LL L LS G+ + VA
Sbjct: 82 QQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVA 141
Query: 131 LMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINSAL----IFVSHDRRFLETLSTT 186
L + L ++P++L+LDEP + LD + EL +I L IFV+HD E L+
Sbjct: 142 LARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADR 201
Query: 187 TVWLDRGCLHH 197
V ++ G L +
Sbjct: 202 IVVMEDGRLQY 212
>gnl|CDD|73026 cd03267, ABC_NatA_like, Similar in sequence to NatA, this is the
ATPase component of a bacterial ABC-type Na+ transport
system called NatAB, which catalyzes ATP-dependent
electrogenic Na+ extrusion without mechanically coupled
to proton or K+ uptake. NatB possess six putative
membrane spanning regions at its C-terminus. In B.
subtilis, NatAB is inducible by agents such as ethanol
and protonophores, which lower the protonmotive force
across the membrane. The closest sequence similarity to
NatA is exhibited by DrrA of the two-component
daunomycin- and doxorubicin-efflux system. Hence, the
functional NatAB is presumably assembled with two copies
of the single ATP-binding protein and the single
intergral membrane protein..
Length = 236
Score = 74.1 bits (182), Expect = 1e-13
Identities = 48/186 (25%), Positives = 86/186 (46%), Gaps = 16/186 (8%)
Query: 292 KQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNL---- 347
++Y + +K S I GE +G +GPNGAGKTT LK+L+G ++P G + + +
Sbjct: 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR 88
Query: 348 ------KIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQAH 401
+I + ++ + D + + + + + + L +
Sbjct: 89 RKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLD 148
Query: 402 SLMKHLSGGEKMRA-IVARVLAQPFNFLIMDEPTNDLDF----ETLDFLERTITQLQGTI 456
+ ++ LS G++MRA I A +L +P L +DEPT LD +FL+ + T+
Sbjct: 149 TPVRQLSLGQRMRAEIAAALLHEP-EILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTV 207
Query: 457 LIVSHD 462
L+ SH
Sbjct: 208 LLTSHY 213
Score = 62.9 bits (153), Expect = 2e-10
Identities = 50/202 (24%), Positives = 89/202 (44%), Gaps = 27/202 (13%)
Query: 18 IDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNV----FLHSSSRLGYL 73
++ L+ + +I+ E + +G NG+GK+T LKI +G+ +P SG V + R +L
Sbjct: 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFL 93
Query: 74 EQNPDLSHFSTISQYIDDT--------IKDTIEAPYSPYS--------LLKKFNLREQDR 117
+ + F +Q D + + P + + LL L +
Sbjct: 94 RRIGVV--FGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTP- 150
Query: 118 IENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKIN----SALIFV 173
+ LS+GQ + L+ P+IL LDEPT LD + L + N + ++
Sbjct: 151 VRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLT 210
Query: 174 SHDRRFLETLSTTTVWLDRGCL 195
SH + +E L+ + +D+G L
Sbjct: 211 SHYMKDIEALARRVLVIDKGRL 232
>gnl|CDD|73178 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 73.7 bits (181), Expect = 1e-13
Identities = 47/195 (24%), Positives = 79/195 (40%), Gaps = 41/195 (21%)
Query: 282 KLVLEADKITKQYDDRL---------VVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTG 332
+ +LE + K + V S I GE +G+VG +G GK+TL +L+ G
Sbjct: 2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILG 61
Query: 333 KIKPDCGFITL-GTNLKIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIK 391
+P G I G ++ + +++RE V ++
Sbjct: 62 LEEPTSGEILFEGKDITKLSKEERRER---------------------------VLELLE 94
Query: 392 DFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDF----ETLDFLER 447
+ + LSGG++ R +AR LA ++ DEP + LD + L+ L+
Sbjct: 95 KVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKD 154
Query: 448 TITQLQGTILIVSHD 462
+L T L +SHD
Sbjct: 155 LQEELGLTYLFISHD 169
Score = 69.1 bits (169), Expect = 3e-12
Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 29/163 (17%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGYLEQNPDLS 80
+ V SIK E + LVG +G GKSTL ++ G+ EP SG + + D++
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILF----------EGKDIT 78
Query: 81 HFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLREQDRIENLSVGQTRCVALMKMLISRPD 140
S + + + + +E L ++F R LS GQ + + + + L P
Sbjct: 79 KLS--KEERRERVLELLEK----VGLPEEFLYRYPH---ELSGGQRQRIGIARALALNPK 129
Query: 141 ILILDEPTNHLD-------FRTIHWMEQELLKINSALIFVSHD 176
+++ DEP + LD + +++EL +F+SHD
Sbjct: 130 LIVADEPVSALDVSVQAQILNLLKDLQEEL---GLTYLFISHD 169
>gnl|CDD|73010 cd03251, ABCC_MsbA, MsbA is an essential ABC transporter, closely
related to eukaryotic MDR proteins. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 234
Score = 73.7 bits (181), Expect = 2e-13
Identities = 52/195 (26%), Positives = 94/195 (48%), Gaps = 18/195 (9%)
Query: 285 LEADKITKQY--DDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFIT 342
+E +T +Y D V++D SL I GE + +VGP+G+GK+TL+ L+ D G I
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 343 L-GTNLKIATIDQKREDI-----DP---DKSLASYLTGSSGDSLMVRGESRHVAGYIKDF 393
+ G +++ T+ R I D + ++A + + E A +F
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEF 120
Query: 394 LFH-PDQAHSLMKH----LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERT 448
+ P+ +++ LSGG++ R +AR L + LI+DE T+ LD E+ ++
Sbjct: 121 IMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAA 180
Query: 449 ITQLQG--TILIVSH 461
+ +L T +++H
Sbjct: 181 LERLMKNRTTFVIAH 195
Score = 66.0 bits (161), Expect = 3e-11
Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 25/183 (13%)
Query: 17 GIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF----------LHS 66
G +L+D+ L I E + LVG +GSGKSTL+ + + SG + L S
Sbjct: 14 GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLAS 73
Query: 67 -SSRLGYLEQNPDLSHFSTISQYI-----DDTIKDTIEAPYSPY------SLLKKFNLRE 114
++G + Q+ L + T+++ I T ++ EA + L + ++
Sbjct: 74 LRRQIGLVSQDVFLFN-DTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVI 132
Query: 115 QDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQEL--LKINSALIF 172
+R LS GQ + +A+ + L+ P ILILDE T+ LD + ++ L L N
Sbjct: 133 GERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFV 192
Query: 173 VSH 175
++H
Sbjct: 193 IAH 195
>gnl|CDD|73055 cd03296, ABC_CysA_sulfate_importer, Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The
complex is composed of two ATP-binding proteins (cysA),
two transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 239
Score = 73.0 bits (179), Expect = 2e-13
Identities = 52/211 (24%), Positives = 97/211 (45%), Gaps = 23/211 (10%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLH 65
+ + ++S G L DV L I E + L+G +GSGK+TLL++ AG+ P SG +
Sbjct: 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFG 62
Query: 66 SSS---------RLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKK-----FN 111
+G++ Q+ L T+ + ++ + P + ++
Sbjct: 63 GEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLK 122
Query: 112 LREQDRIEN-----LSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIH----WMEQE 162
L + D + + LS GQ + VAL + L P +L+LDEP LD + W+ +
Sbjct: 123 LVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRL 182
Query: 163 LLKINSALIFVSHDRRFLETLSTTTVWLDRG 193
+++ +FV+HD+ ++ V +++G
Sbjct: 183 HDELHVTTVFVTHDQEEALEVADRVVVMNKG 213
Score = 68.4 bits (167), Expect = 5e-12
Identities = 58/202 (28%), Positives = 94/202 (46%), Gaps = 28/202 (13%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLG 344
+E ++K++ D + + D SL I GE + ++GP+G+GKTTLL+L+ G +PD G I G
Sbjct: 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFG 62
Query: 345 TNLKIATIDQKRED--IDPDKSLASYLTGSSGDSLMVR---GESRHVAGYIKDFLFHPDQ 399
Q+R + +L ++T + +R R I+ +
Sbjct: 63 GEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIR------AK 116
Query: 400 AHSLMK-------------HLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDF----ETL 442
H L+K LSGG++ R +AR LA L++DEP LD E
Sbjct: 117 VHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELR 176
Query: 443 DFLERTITQLQGTILIVSHDRD 464
+L R +L T + V+HD++
Sbjct: 177 RWLRRLHDELHVTTVFVTHDQE 198
>gnl|CDD|143798 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide or belong in different
polypeptide chains.
Length = 119
Score = 72.7 bits (179), Expect = 3e-13
Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 26/125 (20%)
Query: 45 STLLKIAAGITEPQSGNVFLH------------SSSRLGYLEQNPDLSHFSTISQYI--- 89
STLLK+ G+ +P SG + L R+G + Q+P L T+ + +
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTDLSSRKALRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 90 --DDTIKDTIEAPYSPYSLLKKFNL---REQDRIENLSVGQTRCVALMKMLISRPDILIL 144
D E L++ L ++ + LS GQ + VA+ + L+ +P +L+L
Sbjct: 61 LRDKEADARAEE------ALERVGLPDFLDRSPVGTLSGGQKQRVAIARALLKKPKLLLL 114
Query: 145 DEPTN 149
DEPT
Sbjct: 115 DEPTA 119
Score = 62.0 bits (151), Expect = 5e-10
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 17/124 (13%)
Query: 324 TTLLKLLTGKIKPDCGFITLGTN------------LKIATIDQKREDIDPDKSLASYLTG 371
+TLLKL+TG ++P G I L +I + Q + P+ ++ L
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTDLSSRKALRKRIGVVFQDPQLF-PELTVRENLFF 59
Query: 372 SSGDSLMVRGESRHVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMD 431
D ++R ++ S + LSGG+K R +AR L + L++D
Sbjct: 60 GLRDKEA---DAR-AEEALERVGLPDFLDRSPVGTLSGGQKQRVAIARALLKKPKLLLLD 115
Query: 432 EPTN 435
EPT
Sbjct: 116 EPTA 119
>gnl|CDD|33918 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 71.8 bits (176), Expect = 5e-13
Identities = 51/211 (24%), Positives = 95/211 (45%), Gaps = 28/211 (13%)
Query: 6 LRLDHIS-ATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL 64
+ L+++S T G LL ++ ++P ER+ + G +G+GK++LL+ AG+ SG + +
Sbjct: 393 ITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISM 452
Query: 65 HSSSRLGYLEQNP---------DLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLREQ 115
+ S L +L Q P L + + + D + + L ++ + E
Sbjct: 453 PADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGD-LAERLD-EED 510
Query: 116 DRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLD----FRTIHWMEQELLKINSALI 171
LS G+ + +A ++L+ +P + LDE T+ LD R +++EL ++ +I
Sbjct: 511 RWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELP--DATVI 568
Query: 172 FVSHDRRFLETLSTTTVW-LDRGCLHHLDQG 201
V H T+W L LD
Sbjct: 569 SVGH---------RPTLWNFHSRQLELLDDA 590
Score = 65.7 bits (160), Expect = 4e-11
Identities = 58/250 (23%), Positives = 97/250 (38%), Gaps = 39/250 (15%)
Query: 233 WLR--YGVTARRKRNVRRVKELHEIQKQLQEQKKSFHSTIQTHLQTTQSSGKLVLEADKI 290
W Y A + + R+ E + + Q + T + + + LE +
Sbjct: 341 WFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSL 400
Query: 291 TKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLL-------TGKIK-------- 335
D + ++ + + + GE + I G +GAGKT+LL+ L +G+I
Sbjct: 401 RTP-DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALL 459
Query: 336 --PDCGFITLGTNLKIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDF 393
P ++ GT L+ A D L + L H G + D
Sbjct: 460 FLPQRPYLPQGT-LREALCYPNAAPDFSDAELVAVL---------------HKVG-LGDL 502
Query: 394 LFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTI-TQL 452
D+ + LSGGE+ R AR+L ++ +DE T+ LD ET D L + + +L
Sbjct: 503 AERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL 562
Query: 453 QGTILI-VSH 461
+I V H
Sbjct: 563 PDATVISVGH 572
>gnl|CDD|73054 cd03295, ABC_OpuCA_Osmoprotection, OpuCA is a the ATP binding
component of a bacterial solute transporter that serves
a protective role to cells growing in a hyperosmolar
environment. ABC (ATP-binding cassette) transporter
nucleotide-binding domain; ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 242
Score = 71.0 bits (174), Expect = 9e-13
Identities = 49/197 (24%), Positives = 88/197 (44%), Gaps = 28/197 (14%)
Query: 6 LRLDHISATIGGID-LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL 64
+ ++++ GG + ++ L I E + L+G +GSGK+T +K+ + EP SG +F+
Sbjct: 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI 60
Query: 65 HSSS-----------RLGYLEQNPDLSHFSTISQYIDDTIK------DTIEAPYSPYSLL 107
++GY+ Q L T+ + I K + I LL
Sbjct: 61 DGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRE--RADELL 118
Query: 108 KKFNLREQDRIE----NLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQEL 163
L + + LS GQ + V + + L + P +L++DEP LD T +++E
Sbjct: 119 ALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEF 178
Query: 164 LKINSAL----IFVSHD 176
++ L +FV+HD
Sbjct: 179 KRLQQELGKTIVFVTHD 195
Score = 70.2 bits (172), Expect = 2e-12
Identities = 57/197 (28%), Positives = 93/197 (47%), Gaps = 17/197 (8%)
Query: 285 LEADKITKQY-DDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL 343
+E + +TK+Y + V + +L I GE + ++GP+G+GKTT +K++ I+P G I +
Sbjct: 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI 60
Query: 344 -GTNLKIATIDQKREDID---PDKSLASYLTGSSGDSLM--VRGESRH-----VAGYIKD 392
G +++ + R I L ++T +L+ + + +
Sbjct: 61 DGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLAL 120
Query: 393 FLFHPDQ-AHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQ 451
P + A LSGG++ R VAR LA L+MDEP LD T D L+ +
Sbjct: 121 VGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKR 180
Query: 452 LQ----GTILIVSHDRD 464
LQ TI+ V+HD D
Sbjct: 181 LQQELGKTIVFVTHDID 197
>gnl|CDD|33632 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 71.1 bits (174), Expect = 9e-13
Identities = 58/212 (27%), Positives = 94/212 (44%), Gaps = 20/212 (9%)
Query: 302 DFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKR--EDI 359
F L + GE + I+GP+GAGK+TLL L+ G P G I + A+ +R +
Sbjct: 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML 76
Query: 360 DPDKSLASYLT-------GSSGDSLMVRGESRHVAGYIKDFLFHPDQAHSLMKHLSGGEK 412
+ +L ++LT G S L + E R + L LSGG++
Sbjct: 77 FQENNLFAHLTVAQNIGLGLS-PGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQR 135
Query: 413 MRAIVARVLAQPFNFLIMDEPTNDLD----FETLDFLERTITQLQGTILIVSHDRDFLDR 468
R +AR L + L++DEP + LD E L + + + + T+L+V+H + R
Sbjct: 136 QRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAAR 195
Query: 469 TVTSTIAAQNIEDPNGYWIKYAGGYSDMLVQQ 500
IA + + NG I G ++L +
Sbjct: 196 -----IADRVVFLDNGR-IAAQGSTQELLSGK 221
Score = 64.9 bits (158), Expect = 6e-11
Identities = 55/213 (25%), Positives = 91/213 (42%), Gaps = 33/213 (15%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLH 65
L LD + + G + + D L++ E + ++G +G+GKSTLL + AG P SG + ++
Sbjct: 2 LALDDVRFSYGHLPMRFD--LTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILIN 59
Query: 66 SSSRLGYLEQNPDLSHFSTISQ----YIDDTIKDTIEAPYSPYSLLKKFNLREQDRIEN- 120
P S + Q + T+ I SP L K N +++++E
Sbjct: 60 GVDHTA---SPPAERPVSMLFQENNLFAHLTVAQNIGLGLSP-GL--KLNAEQREKVEAA 113
Query: 121 ----------------LSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELL 164
LS GQ + VAL + L+ IL+LDEP + LD M +
Sbjct: 114 AAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVS 173
Query: 165 KINS----ALIFVSHDRRFLETLSTTTVWLDRG 193
++ L+ V+H ++ V+LD G
Sbjct: 174 QLCDERKMTLLMVTHHPEDAARIADRVVFLDNG 206
>gnl|CDD|73008 cd03249, ABC_MTABC3_MDL1_MDL2, MTABC3 (also known as ABCB6) is a
mitochondrial ATP-binding cassette protein involved in
iron homeostasis and one of four ABC transporters
expressed in the mitochondrial inner membrane, the other
three being MDL1(ABC7), MDL2, and ATM1. In fact, the
yeast MDL1 (multidrug resistance-like protein 1) and
MDL2 (multidrug resistance-like protein 2) transporters
are also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another..
Length = 238
Score = 70.9 bits (174), Expect = 1e-12
Identities = 47/156 (30%), Positives = 76/156 (48%), Gaps = 25/156 (16%)
Query: 20 LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL-----------HSSS 68
+L+ + L+I P + + LVG +G GKST++ + +P SG + L S
Sbjct: 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRS 77
Query: 69 RLGYLEQNPDLSHFS-TISQYI-----DDTIKDTIEAPYSPY------SLLKKFNLREQD 116
++G + Q P L F TI++ I D T ++ EA SL ++ +
Sbjct: 78 QIGLVSQEPVL--FDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGE 135
Query: 117 RIENLSVGQTRCVALMKMLISRPDILILDEPTNHLD 152
R LS GQ + +A+ + L+ P IL+LDE T+ LD
Sbjct: 136 RGSQLSGGQKQRIAIARALLRNPKILLLDEATSALD 171
Score = 68.6 bits (168), Expect = 4e-12
Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 16/182 (8%)
Query: 296 DRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-GTNLKIATIDQ 354
D ++K SL I G+ + +VG +G GK+T++ LL P G I L G +++ +
Sbjct: 15 DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRW 74
Query: 355 KREDI-----DP---DKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFH-PDQAHSLM- 404
R I +P D ++A + D+ E I DF+ PD +L+
Sbjct: 75 LRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVG 134
Query: 405 ---KHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG--TILIV 459
LSGG+K R +AR L + L++DE T+ LD E+ ++ + + T +++
Sbjct: 135 ERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVI 194
Query: 460 SH 461
+H
Sbjct: 195 AH 196
>gnl|CDD|72976 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multiprotein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet..
Length = 200
Score = 70.9 bits (174), Expect = 1e-12
Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 27/179 (15%)
Query: 295 DDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTG--KIKPDCGFITL-GTNLKIAT 351
+ ++K +L I GE ++GPNG+GK+TL K + G K + G I G ++
Sbjct: 11 GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDIT--- 67
Query: 352 IDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQAHSLMKHLSGGE 411
D+ P++ + + + G DFL + + SGGE
Sbjct: 68 ------DLPPEERARLGIFLAFQYPPEIPGVK------NADFL------RYVNEGFSGGE 109
Query: 412 KMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG---TILIVSHDRDFLD 467
K R + ++L + I+DEP + LD + L + I +L+ ++LI++H + LD
Sbjct: 110 KKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168
Score = 67.8 bits (166), Expect = 9e-12
Identities = 49/195 (25%), Positives = 89/195 (45%), Gaps = 28/195 (14%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGI--TEPQSGNVF 63
L + + ++GG ++L+ V L+IK E L+G NGSGKSTL K G E G +
Sbjct: 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEIL 60
Query: 64 LHSSSRLGYLEQNPDLSHFSTISQYIDDTIKDTIE-APYSPYSL----LKKFNLREQDRI 118
+ D++ ++ + I A P + F LR +
Sbjct: 61 F----------KGEDITDLP-----PEERARLGIFLAFQYPPEIPGVKNADF-LRYVN-- 102
Query: 119 ENLSVGQTRCVALMKMLISRPDILILDEPTNHLD---FRTIHWMEQELLKINSALIFVSH 175
E S G+ + ++++L+ PD+ ILDEP + LD R + + +L + +++ ++H
Sbjct: 103 EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITH 162
Query: 176 DRRFLETLSTTTVWL 190
+R L+ + V +
Sbjct: 163 YQRLLDYIKPDRVHV 177
>gnl|CDD|35281 KOG0058, KOG0058, KOG0058, Peptide exporter, ABC superfamily
[Intracellular trafficking, secretion, and vesicular
transport].
Length = 716
Score = 70.7 bits (173), Expect = 1e-12
Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 25/156 (16%)
Query: 20 LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL---------HSS--S 68
+L+++ +I+P E + LVG +GSGKST+ + +P SG + L H
Sbjct: 483 VLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRR 542
Query: 69 RLGYLEQNPDLSHFS-TISQYI--------DDTIKDTIEAPYSP---YSLLKKFNLREQD 116
++G + Q P L FS +I + I D+ I+ + + + +N +
Sbjct: 543 KIGLVGQEPVL--FSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGE 600
Query: 117 RIENLSVGQTRCVALMKMLISRPDILILDEPTNHLD 152
+ LS GQ + +A+ + L+ P +LILDE T+ LD
Sbjct: 601 KGSQLSGGQKQRIAIARALLRNPRVLILDEATSALD 636
Score = 70.0 bits (171), Expect = 2e-12
Identities = 54/192 (28%), Positives = 92/192 (47%), Gaps = 34/192 (17%)
Query: 295 DDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-GTNL------ 347
D V+K+ S I GE + +VGP+G+GK+T+ LL P G I L G +
Sbjct: 479 PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHK 538
Query: 348 ----KIATIDQK--------REDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLF 395
KI + Q+ RE+I A L ++ + + + + +I +F
Sbjct: 539 YLRRKIGLVGQEPVLFSGSIRENI------AYGLDNATDEEIEAAAKMANAHEFITNF-- 590
Query: 396 HPDQAHSLM----KHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQ 451
PD ++++ LSGG+K R +AR L + LI+DE T+ LD E+ ++ + +
Sbjct: 591 -PDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDR 649
Query: 452 LQG--TILIVSH 461
L T+L+++H
Sbjct: 650 LMQGRTVLVIAH 661
>gnl|CDD|73058 cd03299, ABC_ModC_like, Archeal protein closely related to ModC.
ModC is an ABC-type transporter and the ATPase component
of a molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 235
Score = 69.9 bits (171), Expect = 2e-12
Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 19/175 (10%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSS---------RLG 71
L++V L ++ + ++G GSGKS LL+ AG +P SG + L+ +
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDIS 74
Query: 72 YLEQN----PDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLRE--QDRIENLSVGQ 125
Y+ QN P ++ + I+ + D E + + + + E LS G+
Sbjct: 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGE 134
Query: 126 TRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKI----NSALIFVSHD 176
+ VA+ + L+ P IL+LDEP + LD RT + +EL KI ++ V+HD
Sbjct: 135 QQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHD 189
Score = 66.4 bits (162), Expect = 2e-11
Identities = 56/195 (28%), Positives = 92/195 (47%), Gaps = 23/195 (11%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLG 344
L+ + ++K + + +K+ SL + G+ I+GP G+GK+ LL+ + G IKPD G I L
Sbjct: 1 LKVENLSKDWKE-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLN 59
Query: 345 ----TNLK-----IATIDQKR---EDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIK- 391
TNL I+ + Q + K++A L D + + +A +
Sbjct: 60 GKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGI 119
Query: 392 DFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFET----LDFLER 447
D L + LSGGE+ R +AR L L++DEP + LD T + L++
Sbjct: 120 DHLLNRKPE-----TLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKK 174
Query: 448 TITQLQGTILIVSHD 462
+ T+L V+HD
Sbjct: 175 IRKEFGVTVLHVTHD 189
>gnl|CDD|30745 COG0396, SufC, ABC-type transport system involved in Fe-S cluster
assembly, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 251
Score = 69.4 bits (170), Expect = 3e-12
Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 21/194 (10%)
Query: 295 DDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTG--KIKPDCGFITL-GTNLKIAT 351
+ ++K +L + GE I+GPNG+GK+TL + G K + G I G ++ +
Sbjct: 15 GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELS 74
Query: 352 IDQK-REDID---------PDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFL----FHP 397
D++ R I P + + +L + RG +K+
Sbjct: 75 PDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDE 134
Query: 398 DQAH-SLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG-- 454
+ + + SGGEK R + ++L I+DEP + LD + L + I L+
Sbjct: 135 EFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEG 194
Query: 455 -TILIVSHDRDFLD 467
+LI++H + LD
Sbjct: 195 RGVLIITHYQRLLD 208
Score = 56.7 bits (137), Expect = 2e-08
Identities = 47/213 (22%), Positives = 86/213 (40%), Gaps = 29/213 (13%)
Query: 5 ILRLDHISATI-GGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGIT--EPQSGN 61
+L + + + G ++L+ V L++K E ++G NGSGKSTL G E G
Sbjct: 3 MLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGE 62
Query: 62 VFL----------HSSSRLG-YLE-QNPDLSHFSTISQYIDDTIKDTIEAPYSP------ 103
+ +R G +L Q P T S ++ + A
Sbjct: 63 ILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKE 122
Query: 104 -YSLLKKFNLREQ--DRI--ENLSVGQTRCVALMKMLISRPDILILDEPTNHLD---FRT 155
+ L E+ +R E S G+ + ++++L+ P + ILDEP + LD +
Sbjct: 123 LKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKI 182
Query: 156 IHWMEQELLKINSALIFVSHDRRFLETLSTTTV 188
+ L + ++ ++H +R L+ + V
Sbjct: 183 VAEGINALREEGRGVLIITHYQRLLDYIKPDKV 215
>gnl|CDD|73013 cd03254, ABCC_Glucan_exporter_like, Glucan exporter ATP-binding
protein. In A. tumefaciens cyclic beta-1, 2-glucan must
be transported into the periplasmic space to exert its
action as a virluence factor. This subfamily belongs to
the MRP-like family and is involved in drug, peptide,
and lipid export. The MRP-like family, similar to all
ABC proteins, have a common four-domain core structure
constituted by two membrane-spanning domains each
composed of six transmembrane (TM) helices and two
nucleotide-binding domains (NBD). ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 229
Score = 69.1 bits (169), Expect = 3e-12
Identities = 49/185 (26%), Positives = 84/185 (45%), Gaps = 27/185 (14%)
Query: 16 GGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL---------HS 66
+L+D+ SIKP E + +VG G+GK+TL+ + +PQ G + +
Sbjct: 14 EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRK 73
Query: 67 S--SRLGYLEQNPDLSHFS-TISQYI---DDTIKD--------TIEAPYSPYSLLKKFNL 112
S S +G + Q+ L FS TI + I D A L ++
Sbjct: 74 SLRSMIGVVLQDTFL--FSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDT 131
Query: 113 REQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKI--NSAL 170
+ NLS G+ + +A+ + ++ P ILILDE T+++D T +++ L K+
Sbjct: 132 VLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTS 191
Query: 171 IFVSH 175
I ++H
Sbjct: 192 IIIAH 196
Score = 65.6 bits (160), Expect = 4e-11
Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 18/183 (9%)
Query: 296 DRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-GTNLKIATIDQ 354
+ V+KD + I GE + IVGP GAGKTTL+ LL P G I + G +++ +
Sbjct: 15 KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKS 74
Query: 355 KREDID---------PDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFH-PDQAHSLM 404
R I + + G + E+ AG DF+ P+ +++
Sbjct: 75 LRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAG-AHDFIMKLPNGYDTVL 133
Query: 405 KH----LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG--TILI 458
LS GE+ +AR + + LI+DE T+++D ET ++ + +L T +I
Sbjct: 134 GENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSII 193
Query: 459 VSH 461
++H
Sbjct: 194 IAH 196
>gnl|CDD|35284 KOG0061, KOG0061, KOG0061, Transporter, ABC superfamily (Breast
cancer resistance protein) [Secondary metabolites
biosynthesis, transport and catabolism].
Length = 613
Score = 69.2 bits (169), Expect = 3e-12
Identities = 60/293 (20%), Positives = 112/293 (38%), Gaps = 50/293 (17%)
Query: 297 RLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDC---GFITL-GTNLKIATI 352
+ ++K S GE + I+GP+G+GKTTLL L G++ G I L G +
Sbjct: 43 KTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSF 102
Query: 353 DQK-----REDID-PDKSLASYLTGSS----GDSLMVRGESRHVAGYIKDF-LFHPDQAH 401
+ ++D+ P ++ L S+ SL + V I + L A
Sbjct: 103 RKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKC--AD 160
Query: 402 SLM-----KHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD----FETLDFLERTITQL 452
+L+ + LSGGE+ R +A L + L +DEPT+ LD + + L + + +
Sbjct: 161 TLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLL-KRLARS 219
Query: 453 QGTILIVSHD-----RDFLDRTVTSTIAAQNIEDPNGYWIKYAGGYSDML-VQQKKSHPT 506
T++ H + D+ + + G + Y+G ++L P
Sbjct: 220 GRTVICTIHQPSSELFELFDKLLLLS---------EGEVV-YSGSPRELLEFFSSLGFPC 269
Query: 507 PQKKNPP-------AQSLQEETVKKEKKQKRKNRLSYSQKLLLERLPQEIHKI 552
P+ +NP + +++ + + L + L +
Sbjct: 270 PELENPADFLLDLLSVDSGTRELEEAVRIAKLINKFSQTDNLKKTLEALEKSL 322
Score = 65.4 bits (159), Expect = 4e-11
Identities = 46/184 (25%), Positives = 81/184 (44%), Gaps = 28/184 (15%)
Query: 20 LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQ---SGNVFLHSSSRL------ 70
+L+ V + KP E + ++G +GSGK+TLL AG SG + L+ R
Sbjct: 45 ILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRK 104
Query: 71 --GYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYS-------LLKKFNLRE------- 114
GY++Q+ L T+ + + + + + S ++ + L +
Sbjct: 105 ISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIG 164
Query: 115 QDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKI---NSALI 171
I LS G+ + V++ L++ P IL LDEPT+ LD + + Q L ++ +I
Sbjct: 165 NPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVI 224
Query: 172 FVSH 175
H
Sbjct: 225 CTIH 228
>gnl|CDD|73009 cd03250, ABCC_MRP_domain1, Domain 1 of the ABC subfamily C. This
family is also known as MRP (mulrtidrug
resisitance-associated protein). Some of the MRP
members have five additional transmembrane segments in
their N-terminas, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate..
Length = 204
Score = 69.0 bits (169), Expect = 4e-12
Identities = 49/184 (26%), Positives = 79/184 (42%), Gaps = 33/184 (17%)
Query: 20 LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGYLEQNPDL 79
L+D+ L + E + +VG GSGKS+LL G E SG+V + S + Y+ Q P +
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGS--IAYVSQEPWI 77
Query: 80 SHFSTISQYIDDTIKDTI--EAPYSPY---------SLLKKF-NLREQDRIE------NL 121
+ TI++ I P+ +L L + D E NL
Sbjct: 78 ---------QNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINL 128
Query: 122 SVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQEL----LKINSALIFVSHDR 177
S GQ + ++L + + S DI +LD+P + +D + + L N I V+H
Sbjct: 129 SGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQL 188
Query: 178 RFLE 181
+ L
Sbjct: 189 QLLP 192
Score = 57.0 bits (138), Expect = 1e-08
Identities = 46/192 (23%), Positives = 81/192 (42%), Gaps = 28/192 (14%)
Query: 291 TKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIA 350
+ + + +KD +L + GE + IVGP G+GK++LL L G+++ G +++ IA
Sbjct: 12 SGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG--SIA 69
Query: 351 TIDQK--------REDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQAHS 402
+ Q+ RE+I L G D + D PD +
Sbjct: 70 YVSQEPWIQNGTIRENI---------LFGKPFDEERYE-KVIKACALEPDLEILPDGDLT 119
Query: 403 LMKH----LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFL-ERTIT---QLQG 454
+ LSGG+K R +AR + + ++D+P + +D + E I
Sbjct: 120 EIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNK 179
Query: 455 TILIVSHDRDFL 466
T ++V+H L
Sbjct: 180 TRILVTHQLQLL 191
>gnl|CDD|33892 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 68.8 bits (168), Expect = 4e-12
Identities = 57/197 (28%), Positives = 93/197 (47%), Gaps = 29/197 (14%)
Query: 5 ILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQ---SGN 61
+L L ++S + G LL +V +I E + L+G +G GKSTLL G Q +G
Sbjct: 2 MLCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGE 61
Query: 62 VFLHSSS---------RLGYLEQNPDL-SHFSTISQYIDDTIKDTIEAPY---SPYSLLK 108
++L+ ++G L Q+ L H S + Q + + T++ + + L+
Sbjct: 62 LWLNEQRLDMLPAAQRQIGILFQDALLFPHLS-VGQNLLFALPATLKGNARRNAANAALE 120
Query: 109 KFNLRE---QDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLD------FRTIHWM 159
+ L QD LS GQ VAL++ L+++P L+LDEP + LD FR W+
Sbjct: 121 RSGLDGAFHQDP-ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFR--QWV 177
Query: 160 EQELLKINSALIFVSHD 176
E+ + V+HD
Sbjct: 178 FSEVRAAGIPTVQVTHD 194
Score = 58.1 bits (140), Expect = 7e-09
Identities = 48/201 (23%), Positives = 85/201 (42%), Gaps = 28/201 (13%)
Query: 283 LVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPD---CG 339
+L ++ + ++ + + I GE + ++GP+G GK+TLL + G + G
Sbjct: 1 GMLCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTG 60
Query: 340 FITLG-TNLKIATIDQKREDI-DPDKSLASYLTGSSGDSLM------VRGESRHVAGYIK 391
+ L L + Q++ I D L +L S G +L+ ++G +R A
Sbjct: 61 ELWLNEQRLDMLPAAQRQIGILFQDALLFPHL--SVGQNLLFALPATLKGNARRNAANAA 118
Query: 392 ------DFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDF----ET 441
D FH D A LSGG++ R + R L L++DEP + LD +
Sbjct: 119 LERSGLDGAFHQDPA-----TLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQF 173
Query: 442 LDFLERTITQLQGTILIVSHD 462
++ + + V+HD
Sbjct: 174 RQWVFSEVRAAGIPTVQVTHD 194
>gnl|CDD|33915 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 68.8 bits (168), Expect = 5e-12
Identities = 56/200 (28%), Positives = 87/200 (43%), Gaps = 28/200 (14%)
Query: 288 DKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNL 347
+I K+ + V D SL + GE I+G +G+GK+TL++LL I+P G I +
Sbjct: 32 AEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVD-GK 90
Query: 348 KIATIDQK------REDID---------PDKSLASYLTGSSGDSLMVRG----ESRHVAG 388
IA + R+ I P +++ + L V+G E A
Sbjct: 91 DIAKLSAAELRELRRKKISMVFQSFALLPHRTVLE----NVAFGLEVQGVPKAEREERAL 146
Query: 389 YIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD----FETLDF 444
+ + A LSGG + R +AR LA + L+MDE + LD E D
Sbjct: 147 EALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDE 206
Query: 445 LERTITQLQGTILIVSHDRD 464
L +L+ TI+ ++HD D
Sbjct: 207 LLELQAKLKKTIVFITHDLD 226
Score = 57.7 bits (139), Expect = 1e-08
Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 25/181 (13%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSS------------- 67
+ D L ++ E ++G +GSGKSTL+++ + EP G + +
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 68 --SRLGYLEQNPDLSHFSTISQYIDDTIK----DTIEAPYSPYSLLKKFNL--REQDRIE 119
++ + Q+ L T+ + + ++ E L+ L
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN 163
Query: 120 NLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINSAL----IFVSH 175
LS G + V L + L + PDIL++DE + LD M+ ELL++ + L +F++H
Sbjct: 164 ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITH 223
Query: 176 D 176
D
Sbjct: 224 D 224
>gnl|CDD|72972 cd03213, ABCG_EPDR, ABCG transporters are involved in eye pigment
(EP) precursor transport, regulation of
lipid-trafficking mechanisms, and pleiotropic drug
resistance (DR). DR is a well-described phenomenon
occurring in fungi and shares several similarities with
processes in bacteria and higher eukaryotes. Compared
to other members of the ABC transporter subfamilies, the
ABCG transporter family is composed of proteins that
have an ATP-binding cassette domain at the N-terminus
and a TM (transmembrane) domain at the C-terminus..
Length = 194
Score = 68.3 bits (167), Expect = 6e-12
Identities = 47/162 (29%), Positives = 70/162 (43%), Gaps = 20/162 (12%)
Query: 19 DLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQ--SGNVFLHSSSRLGYLEQN 76
LL++V KP E ++G +G+GKSTLL AG SG V ++
Sbjct: 23 QLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPL------- 75
Query: 77 PDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLREQDRIENLSVGQTRCVALMKMLI 136
D F I Y+ +D I P L + L ++ LS G+ + V++ L+
Sbjct: 76 -DKRSFRKIIGYVP---QDDILHPT----LTVRETLMFAAKLRGLSGGERKRVSIALELV 127
Query: 137 SRPDILILDEPTNHLD-FRTIHWME--QELLKINSALIFVSH 175
S P +L LDEPT+ LD + M + L +I H
Sbjct: 128 SNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIH 169
Score = 67.5 bits (165), Expect = 1e-11
Identities = 47/171 (27%), Positives = 73/171 (42%), Gaps = 29/171 (16%)
Query: 297 RLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKP--DCGFITL-GTNLKIATID 353
+ ++K+ S + GE I+GP+GAGK+TLL L G+ G + + G L +
Sbjct: 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFR 81
Query: 354 QKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQAHSLMKHLSGGEKM 413
+ + D L LT VR E+ A + ++ LSGGE+
Sbjct: 82 KIIGYVPQDDILHPTLT--------VR-ETLMFA--------------AKLRGLSGGERK 118
Query: 414 RAIVARVLAQPFNFLIMDEPTNDLD-FETLDFLE--RTITQLQGTILIVSH 461
R +A L + L +DEPT+ LD L + R + TI+ H
Sbjct: 119 RVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIH 169
>gnl|CDD|33900 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 68.4 bits (167), Expect = 6e-12
Identities = 55/170 (32%), Positives = 79/170 (46%), Gaps = 20/170 (11%)
Query: 315 IVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKREDIDPDKSLASYLTGSSG 374
+ GP+G+GKT+L+ ++ G +PD G I L N ++ +K + P+K Y+ +
Sbjct: 29 LFGPSGSGKTSLINMIAGLTRPDEGRIEL--NGRVLVDAEKGIFLPPEKRRIGYVFQDAR 86
Query: 375 --DSLMVRGESRHVAGYIKDFLFHPDQAHSLM----------KHLSGGEKMRAIVARVLA 422
VRG R+ G K DQ +L+ LSGGEK R + R L
Sbjct: 87 LFPHYTVRGNLRY--GMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALL 144
Query: 423 QPFNFLIMDEPTNDLDF----ETLDFLERTITQLQGTILIVSHDRDFLDR 468
L+MDEP LD E L +LER ++ IL VSH D + R
Sbjct: 145 TAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLR 194
Score = 58.7 bits (142), Expect = 4e-09
Identities = 46/184 (25%), Positives = 84/184 (45%), Gaps = 20/184 (10%)
Query: 30 PKERIC-LVGCNGSGKSTLLKIAAGITEPQSGNV-----FLHSSS----------RLGYL 73
P I L G +GSGK++L+ + AG+T P G + L + R+GY+
Sbjct: 22 PARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYV 81
Query: 74 EQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLREQDRIENLSVGQTRCVALMK 133
Q+ L T+ + + ++ A + L LS G+ + VA+ +
Sbjct: 82 FQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGR 141
Query: 134 MLISRPDILILDEPTNHLDFRT----IHWMEQELLKINSALIFVSHDRRFLETLSTTTVW 189
L++ P++L++DEP LD + ++E+ +IN +++VSH + L+ V
Sbjct: 142 ALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVV 201
Query: 190 LDRG 193
L+ G
Sbjct: 202 LENG 205
>gnl|CDD|72990 cd03231, ABC_CcmA_heme_exporter, CcmA, the ATP-binding component of
the bacterial CcmAB transporter. The CCM family is
involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperone
that binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE..
Length = 201
Score = 68.1 bits (166), Expect = 8e-12
Identities = 50/188 (26%), Positives = 81/188 (43%), Gaps = 16/188 (8%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLG 344
LEAD++T + D R + S + GE + + GPNG+GKTTLL++L G P G + L
Sbjct: 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLN 60
Query: 345 TNLKIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESR-----HVAGYIKDFLFHPDQ 399
+D +R+ I + G +L V R H +++ L
Sbjct: 61 GG----PLDFQRDSIARGLLYLGHAPGIKT-TLSVLENLRFWHADHSDEQVEEALARVGL 115
Query: 400 A---HSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTI---TQLQ 453
+ LS G++ R +AR+L I+DEPT LD + +
Sbjct: 116 NGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARG 175
Query: 454 GTILIVSH 461
G +++ +H
Sbjct: 176 GMVVLTTH 183
Score = 65.7 bits (160), Expect = 3e-11
Identities = 50/163 (30%), Positives = 74/163 (45%), Gaps = 22/163 (13%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLH 65
L D ++ G L + ++ E + + G NGSGK+TLL+I AG++ P +G V L+
Sbjct: 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLN 60
Query: 66 S----------SSRLGYLEQNPD----LSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFN 111
+ L YL P LS + + D + +E L +
Sbjct: 61 GGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVE------EALARVG 114
Query: 112 LR--EQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLD 152
L E + LS GQ R VAL ++L+S + ILDEPT LD
Sbjct: 115 LNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALD 157
>gnl|CDD|72992 cd03233, ABC_PDR_domain1, The pleiotropic drug resistance (PDR)
family of ATP-binding cassette (ABC) transporters. PDR
is a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide-binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 202
Score = 67.1 bits (164), Expect = 1e-11
Identities = 45/180 (25%), Positives = 71/180 (39%), Gaps = 22/180 (12%)
Query: 288 DKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNL 347
K ++KDFS + GE + ++G G+G +TLLK L + N+
Sbjct: 11 FTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRT---------EGNV 61
Query: 348 KIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVA----GYIKDFLFHPDQAHSL 403
+ D I + Y G+ + V E H DF + +
Sbjct: 62 SVEG-DIHYNGIPYKEFAEKY----PGEIIYVSEEDVHFPTLTVRETLDFALRC-KGNEF 115
Query: 404 MKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFET-LDFLE--RTITQLQGTILIVS 460
++ +SGGE+ R +A L + L D T LD T L+ L+ RT+ + T VS
Sbjct: 116 VRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVS 175
Score = 54.4 bits (131), Expect = 8e-08
Identities = 36/150 (24%), Positives = 66/150 (44%), Gaps = 26/150 (17%)
Query: 14 TIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQ---SGNVF------- 63
I +L+D +KP E + ++G GSG STLLK A TE G++
Sbjct: 16 GRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYK 75
Query: 64 -LHSSSRLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLREQDRIENLS 122
+ + + HF T+ T+++T++ ++L + + + +S
Sbjct: 76 EFAEKYPGEIIYVSEEDVHFPTL------TVRETLD-----FAL----RCKGNEFVRGIS 120
Query: 123 VGQTRCVALMKMLISRPDILILDEPTNHLD 152
G+ + V++ + L+SR +L D T LD
Sbjct: 121 GGERKRVSIAEALVSRASVLCWDNSTRGLD 150
>gnl|CDD|34233 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 66.9 bits (163), Expect = 1e-11
Identities = 58/217 (26%), Positives = 102/217 (47%), Gaps = 28/217 (12%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLG 344
LE + + K+Y + V+K SL+ + G+ I I+G +G+GK+T L+ + KP G I +
Sbjct: 7 LEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVN 66
Query: 345 TNLKIATIDQKREDIDPDK-----------------SLASYLTGSSG---DSLMVRGESR 384
D+ + DK +L S++T + V G S+
Sbjct: 67 GEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSK 126
Query: 385 HVAGYIKDFLFHP----DQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFE 440
A + ++A + HLSGG++ R +AR LA ++ DEPT+ LD E
Sbjct: 127 AEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPE 186
Query: 441 TLDFLERTITQL--QG-TILIVSHDRDFLDRTVTSTI 474
+ + + + L +G T+++V+H+ F R V+S +
Sbjct: 187 LVGEVLKVMQDLAEEGRTMVVVTHEMGFA-RDVSSHV 222
Score = 65.3 bits (159), Expect = 5e-11
Identities = 53/231 (22%), Positives = 102/231 (44%), Gaps = 42/231 (18%)
Query: 1 MSLPILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSG 60
+ L ++ + G ++L+ V L + I ++G +GSGKST L+ + +P +G
Sbjct: 2 AAENALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAG 61
Query: 61 NVFLHSS------------------------SRLGYLEQNPDL-SHFSTISQYIDDTI-- 93
++ ++ +RLG + Q+ +L SH + + I+ +
Sbjct: 62 SIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHV 121
Query: 94 --KDTIEAPYSPYSLLKKFNLREQDRI--ENLSVGQTRCVALMKMLISRPDILILDEPTN 149
EA L K + E+ +LS GQ + VA+ + L P++++ DEPT+
Sbjct: 122 LGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTS 181
Query: 150 HLDFRTIHWMEQELLKINSAL-------IFVSHDRRFLETLSTTTVWLDRG 193
LD + E+LK+ L + V+H+ F +S+ ++L +G
Sbjct: 182 ALDPELV----GEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQG 228
>gnl|CDD|73053 cd03294, ABC_Pro_Gly_Bertaine, This family comprises the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system
belong to the larger ATP-Binding Cassette (ABC)
transporter superfamily. The characteristic feature of
these transporters is the obligatory coupling of ATP
hydrolysis to substrate translocation. ABC transporters
are a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 269
Score = 66.7 bits (163), Expect = 2e-11
Identities = 55/197 (27%), Positives = 88/197 (44%), Gaps = 20/197 (10%)
Query: 287 ADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTN 346
++I K+ + V D SL + GE I+G +G+GK+TLL+ + I+P G + +
Sbjct: 27 KEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLID-G 85
Query: 347 LKIATIDQK------REDID---------PDKSLASYLTGSSGDSLMVRGESRHVAGYIK 391
IA + +K R+ I P +++ + + R E A
Sbjct: 86 QDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEAL 145
Query: 392 DFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD----FETLDFLER 447
+ + H LSGG + R +AR LA + L+MDE + LD E D L R
Sbjct: 146 ELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLR 205
Query: 448 TITQLQGTILIVSHDRD 464
+LQ TI+ ++HD D
Sbjct: 206 LQAELQKTIVFITHDLD 222
Score = 61.7 bits (150), Expect = 5e-10
Identities = 46/181 (25%), Positives = 76/181 (41%), Gaps = 25/181 (13%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLH-------SSSRLGYL 73
+ DV L ++ E ++G +GSGKSTLL+ + EP SG V + S L L
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELREL 99
Query: 74 EQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLR--------------EQDRIE 119
+ F + + T+ + + + + E +
Sbjct: 100 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPD 159
Query: 120 NLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINSAL----IFVSH 175
LS G + V L + L PDIL++DE + LD M+ ELL++ + L +F++H
Sbjct: 160 ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITH 219
Query: 176 D 176
D
Sbjct: 220 D 220
>gnl|CDD|73057 cd03298, ABC_ThiQ_thiamine_transporter, ABC-type thiamine tranport
system; part of the binding-protein-dependent transport
system tbpA-thiPQ for thiamine and TPP. Probably
responsible for the translocation of thiamine across the
membrane. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 211
Score = 66.5 bits (162), Expect = 2e-11
Identities = 57/207 (27%), Positives = 92/207 (44%), Gaps = 21/207 (10%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLH 65
+RLD I + G + L+ E +VG +GSGKSTLL + AG PQSG V ++
Sbjct: 1 VRLDKIRFSYGEQPM--HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLIN 58
Query: 66 ---------SSSRLGYLEQNPDLSHFSTISQYID----DTIKDTIEAPYSPYSLLKKFNL 112
+ + L Q +L T+ Q + +K T E + L + L
Sbjct: 59 GVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGL 118
Query: 113 REQD--RIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINS-- 168
+ LS G+ + VAL ++L+ +L+LDEP LD M +L +++
Sbjct: 119 AGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAET 178
Query: 169 --ALIFVSHDRRFLETLSTTTVWLDRG 193
++ V+H + L+ V+LD G
Sbjct: 179 KMTVLMVTHQPEDAKRLAQRVVFLDNG 205
Score = 66.1 bits (161), Expect = 2e-11
Identities = 48/173 (27%), Positives = 74/173 (42%), Gaps = 14/173 (8%)
Query: 302 DFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKREDID- 360
F L GE IVGP+G+GK+TLL L+ G P G + + + + +
Sbjct: 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLIN-GVDVTAAPPADRPVSM 74
Query: 361 --PDKSLASYLTGSSG------DSLMVRGESRHVAGYIKDFLFHPDQAHSLMKHLSGGEK 412
+ +L ++LT L + E R + L LSGGE+
Sbjct: 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGER 134
Query: 413 MRAIVARVLAQPFNFLIMDEPTNDLD----FETLDFLERTITQLQGTILIVSH 461
R +ARVL + L++DEP LD E LD + + + T+L+V+H
Sbjct: 135 QRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTH 187
>gnl|CDD|72995 cd03236, ABC_RNaseL_inhibitor_domain1, The ATPase domain 1 of RNase
L inhibitor. The ABC ATPase, RNase L inhibitor (RLI),
is a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI s are not transport proteins and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLIs have an N-terminal
Fe-S domain and two nucleotide binding domains which are
arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology..
Length = 255
Score = 66.4 bits (162), Expect = 2e-11
Identities = 50/179 (27%), Positives = 78/179 (43%), Gaps = 22/179 (12%)
Query: 310 GECIGIVGPNGAGKTTLLKLLTGKIKPDCGFIT------------LGTNLKIATIDQKRE 357
G+ +G+VGPNG GK+T LK+L GK+KP+ G G+ L+
Sbjct: 26 GQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEG 85
Query: 358 DIDPDKS------LASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQAHSLMKHLSGGE 411
D+ + + G G+ L+ + + R + D L + LSGGE
Sbjct: 86 DVKVIVKPQYVDLIPKAVKGKVGE-LLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGE 144
Query: 412 KMRAIVARVLAQPFNFLIMDEPTNDLDFE---TLDFLERTITQLQGTILIVSHDRDFLD 467
R +A LA+ +F DEP++ LD + L R + + +L+V HD LD
Sbjct: 145 LQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLD 203
Score = 56.0 bits (135), Expect = 3e-08
Identities = 52/194 (26%), Positives = 80/194 (41%), Gaps = 49/194 (25%)
Query: 29 KPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGYLEQNPD----LSHF-- 82
+ + + LVG NG GKST LKI AG +P LG + PD L F
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGKLKPN-----------LGKFDDPPDWDEILDEFRG 72
Query: 83 STISQYIDDTIKDTIEAPYSPY--------------SLLKKFNLREQ------------- 115
S + Y ++ ++ P LLKK + R +
Sbjct: 73 SELQNYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHV 132
Query: 116 -DR-IENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFR---TIHWMEQELLKINSAL 170
DR I+ LS G+ + VA+ L D DEP+++LD + + +EL + ++ +
Sbjct: 133 LDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYV 192
Query: 171 IFVSHDRRFLETLS 184
+ V HD L+ LS
Sbjct: 193 LVVEHDLAVLDYLS 206
>gnl|CDD|73011 cd03252, ABCC_Hemolysin, The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy..
Length = 237
Score = 66.1 bits (161), Expect = 3e-11
Identities = 49/186 (26%), Positives = 88/186 (47%), Gaps = 22/186 (11%)
Query: 295 DDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQ 354
D +++ + SLRI GE +GIVG +G+GK+TL KL+ P+ G + + + +A D
Sbjct: 13 DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGH-DLALADP 71
Query: 355 K----------REDIDPDKSLASYLTGSSGDSLMVRGESRHVAGY--IKDFLFHPDQAHS 402
+E++ ++S+ + + D M A DF+ + +
Sbjct: 72 AWLRRQVGVVLQENVLFNRSIRDNI--ALADPGMSMERVIEAAKLAGAHDFISELPEGYD 129
Query: 403 LM-----KHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG--T 455
+ LSGG++ R +AR L LI DE T+ LD+E+ + R + + T
Sbjct: 130 TIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRT 189
Query: 456 ILIVSH 461
++I++H
Sbjct: 190 VIIIAH 195
Score = 63.0 bits (153), Expect = 2e-10
Identities = 46/187 (24%), Positives = 81/187 (43%), Gaps = 33/187 (17%)
Query: 17 GIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHS---------- 66
G +L ++ L IKP E + +VG +GSGKSTL K+ P++G V +
Sbjct: 14 GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAW 73
Query: 67 -SSRLGYLEQNPDLSHFSTISQYIDDTIKDTIEAP-----------YSPYSLLKK----F 110
++G + Q L ++ I D I + + + +
Sbjct: 74 LRRQVGVVLQENVL-----FNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGY 128
Query: 111 NLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKI--NS 168
+ ++ LS GQ + +A+ + LI P ILI DE T+ LD+ + H + + + I
Sbjct: 129 DTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGR 188
Query: 169 ALIFVSH 175
+I ++H
Sbjct: 189 TVIIIAH 195
>gnl|CDD|73012 cd03253, ABCC_ATM1_transporter, ATM1 is an ABC transporter that is
expressed in the mitochondria. Although the specific
function of ATM1 is unknown, its disruption results in
the accumulation of excess mitochondrial iron, loss of
mitochondrial cytochromes, oxidative damage to
mitochondrial DNA, and decreased levels of cytosolic
heme proteins. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 236
Score = 65.6 bits (160), Expect = 4e-11
Identities = 54/197 (27%), Positives = 93/197 (47%), Gaps = 23/197 (11%)
Query: 285 LEADKITKQYDD-RLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL 343
+E + +T YD R V+KD S I G+ + IVGP+G+GK+T+L+LL G I +
Sbjct: 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILI 60
Query: 344 -GTNLKIATIDQKREDI-----------DPDKSLASYLTGSSGDSLMVRG-ESRHVAGYI 390
G +++ T+D R I D Y + D ++ ++ + I
Sbjct: 61 DGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKI 120
Query: 391 KDFLFHPDQAHSLMKH----LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLE 446
F PD +++ LSGGEK R +AR + + L++DE T+ LD T ++
Sbjct: 121 MRF---PDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177
Query: 447 RTITQLQG--TILIVSH 461
+ + T ++++H
Sbjct: 178 AALRDVSKGRTTIVIAH 194
Score = 62.5 bits (152), Expect = 3e-10
Identities = 59/247 (23%), Positives = 98/247 (39%), Gaps = 54/247 (21%)
Query: 6 LRLDHIS-ATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSG---- 60
+ ++++ A G +L+DV +I +++ +VG +GSGKST+L++ + SG
Sbjct: 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILI 60
Query: 61 ------NVFLHS-SSRLGYLEQ----------------NPDLSHFSTISQYIDDTIKDTI 97
V L S +G + Q PD + I I D I
Sbjct: 61 DGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKI 120
Query: 98 EAPYSPYSLLKKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIH 157
++ +R LS G+ + VA+ + ++ P IL+LDE T+ LD T
Sbjct: 121 M------RFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTER 174
Query: 158 WMEQELLKI--NSALIFVSHDRRFLETLSTTT-----VWLDRGCL-----HH--LDQGFA 203
++ L + I ++H LST + L G + H L +G
Sbjct: 175 EIQAALRDVSKGRTTIVIAH------RLSTIVNADKIIVLKDGRIVERGTHEELLAKGGL 228
Query: 204 YFESWKK 210
Y E WK
Sbjct: 229 YAEMWKA 235
>gnl|CDD|73007 cd03248, ABCC_TAP, TAP, the Transporter Associated with Antigen
Processing; TAP is essential for peptide delivery from
the cytosol into the lumen of the endoplasmic reticulum
(ER), where these peptides are loaded on major
histocompatibility complex (MHC) I molecules. Loaded
MHC I leave the ER and display their antigenic cargo on
the cell surface to cytotoxic T cells. Subsequently,
virus-infected or malignantly transformed cells can be
eliminated. TAP belongs to the large family of
ATP-binding cassette (ABC) transporters, which
translocate a vast variety of solutes across membranes..
Length = 226
Score = 65.4 bits (159), Expect = 5e-11
Identities = 52/184 (28%), Positives = 91/184 (49%), Gaps = 20/184 (10%)
Query: 296 DRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-GTNL------- 347
D LV++D S +H GE +VGP+G+GK+T++ LL +P G + L G +
Sbjct: 26 DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKY 85
Query: 348 ---KIATIDQKREDIDPDKSLA---SY-LTGSSGDSLMVRGESRHVAGYIKDFLFHPD-Q 399
K++ + Q E + +SL +Y L S + + + H +I + D +
Sbjct: 86 LHSKVSLVGQ--EPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTE 143
Query: 400 AHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQ--LQGTIL 457
LSGG+K R +AR L + LI+DE T+ LD E+ +++ + + T+L
Sbjct: 144 VGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVL 203
Query: 458 IVSH 461
+++H
Sbjct: 204 VIAH 207
Score = 59.2 bits (143), Expect = 3e-09
Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 23/166 (13%)
Query: 20 LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL-----------HSSS 68
+LQDV ++ P E LVG +GSGKST++ + +PQ G V L + S
Sbjct: 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88
Query: 69 RLGYLEQNPDLSHFST-------ISQYIDDTIKDTIEAPYSPYSLLKKFNLREQ----DR 117
++ + Q P L S + + +K+ + +S + + ++
Sbjct: 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQK-AHAHSFISELASGYDTEVGEK 147
Query: 118 IENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQEL 163
LS GQ + VA+ + LI P +LILDE T+ LD + ++Q L
Sbjct: 148 GSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQAL 193
>gnl|CDD|34390 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 64.2 bits (156), Expect = 1e-10
Identities = 54/189 (28%), Positives = 90/189 (47%), Gaps = 24/189 (12%)
Query: 299 VVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL---GTNLKIATIDQK 355
V+++ SL ++ GEC+ + GP+G+GK+TLL+ L PD G I + G + + T +
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTA-EP 84
Query: 356 REDIDPDKSLASYLT------------GSSGDSLMVRGESRHVA-GYIKDFLFH---PDQ 399
RE ++ ++ Y++ + L+ RG R VA D L P++
Sbjct: 85 REVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPER 144
Query: 400 AHSLM-KHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTI--TQLQGTI 456
SL SGGE+ R +AR + L++DEPT LD + I + +G
Sbjct: 145 LWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAA 204
Query: 457 LI-VSHDRD 464
L+ + HD +
Sbjct: 205 LVGIFHDEE 213
Score = 51.8 bits (124), Expect = 5e-07
Identities = 52/202 (25%), Positives = 85/202 (42%), Gaps = 35/202 (17%)
Query: 16 GGIDL--LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSS------ 67
GG+ L L++V LS+ E + L G +GSGKSTLL+ P G + +
Sbjct: 20 GGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDL 79
Query: 68 -------------SRLGYLEQN----PDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKF 110
+ +GY+ Q P +S +++ + A LL +
Sbjct: 80 VTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRL 139
Query: 111 NLREQDRIENL-----SVGQTRCVALMKMLISRPDILILDEPTNHLDF---RTIHWMEQE 162
NL E R+ +L S G+ + V + + I IL+LDEPT LD + + +E
Sbjct: 140 NLPE--RLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIRE 197
Query: 163 LLKINSALIFVSHDRRFLETLS 184
+AL+ + HD E ++
Sbjct: 198 AKARGAALVGIFHDEEVREAVA 219
>gnl|CDD|73061 cd03369, ABCC_NFT1, Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (mulrtidrug
resisitance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminas,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate..
Length = 207
Score = 63.4 bits (154), Expect = 2e-10
Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 24/170 (14%)
Query: 20 LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHS-----------SS 68
+L++V +K E+I +VG G+GKSTL+ E + G + + S
Sbjct: 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82
Query: 69 RLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFN-LREQDRIENLSVGQTR 127
L + Q+P L TI+ ++ P+ YS + + LR + NLS GQ +
Sbjct: 83 SLTIIPQDPTL---------FSGTIRSNLD-PFDEYSDEEIYGALRVSEGGLNLSQGQRQ 132
Query: 128 CVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKI--NSALIFVSH 175
+ L + L+ RP +L+LDE T +D+ T +++ + + NS ++ ++H
Sbjct: 133 LLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAH 182
Score = 57.6 bits (139), Expect = 9e-09
Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 15/169 (8%)
Query: 299 VVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKRED 358
V+K+ S ++ GE IGIVG GAGK+TL+ L ++ + G I + + I+TI +
Sbjct: 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEI-DGIDISTIPLED-- 79
Query: 359 IDPDKSLASYLTGSSGDSLMVRGESRH----VAGYIKDFLFHPDQAHSLMKHLSGGEKMR 414
L S LT D + G R Y + ++ + +LS G++
Sbjct: 80 ------LRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQL 133
Query: 415 AIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQL--QGTILIVSH 461
+AR L + L++DE T +D+ T +++TI + TIL ++H
Sbjct: 134 LCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAH 182
>gnl|CDD|34862 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 63.0 bits (153), Expect = 2e-10
Identities = 47/185 (25%), Positives = 84/185 (45%), Gaps = 22/185 (11%)
Query: 296 DRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-GTNLKIATIDQ 354
R ++ S I G+ + IVG +GAGK+T+L+LL + G IT+ G +++ T
Sbjct: 275 RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQS 334
Query: 355 KREDI-----------DPDKSLASY-LTGSSGDSLMVRGESRHVAGYIKDFLFHPDQAHS 402
R I D Y ++ + + E+ + +I+ P+ +
Sbjct: 335 LRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSL---PEGYDT 391
Query: 403 LMKH----LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQG--TI 456
+ LSGGEK R +AR + + LI+DE T+ LD T ++ + ++ T
Sbjct: 392 GVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTT 451
Query: 457 LIVSH 461
L+++H
Sbjct: 452 LVIAH 456
Score = 45.2 bits (107), Expect = 5e-05
Identities = 56/229 (24%), Positives = 92/229 (40%), Gaps = 49/229 (21%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGYLEQNPDLS 80
L + +I + + +VG +G+GKST+L++ + SG++ + + + Q
Sbjct: 279 LNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITI-DGQDIRDVTQQSLRR 337
Query: 81 HFSTISQ---YIDDTIKDTIE------APYSPYSLLKKFNLREQDRIEN----------- 120
+ Q +DTI I+ + + + D I++
Sbjct: 338 AIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAA--QIHDFIQSLPEGYDTGVGE 395
Query: 121 ----LSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINSALIFVSHD 176
LS G+ + VA+ + ++ P ILILDE T+ LD T EQ I +AL VS
Sbjct: 396 RGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHT----EQA---IQAALREVSAG 448
Query: 177 RRFL---ETLSTTT-----VWLDRGCL-------HHLDQGFAYFESWKK 210
R L LST + LD G + L G Y E W++
Sbjct: 449 RTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGLYAEMWRR 497
>gnl|CDD|31314 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 63.2 bits (154), Expect = 2e-10
Identities = 56/213 (26%), Positives = 88/213 (41%), Gaps = 36/213 (16%)
Query: 278 QSSGKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPD 337
++ +E + Y D+ +KD +L I + ++GP+G GK+TLL+ L
Sbjct: 1 ETMKIPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLI 60
Query: 338 CGFITLGTNLKIATIDQKREDIDP-----------------DKSL---ASY---LTGSSG 374
G G + + + +D S+ +Y L G
Sbjct: 61 PGARVEG-EVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKD 119
Query: 375 DSLMVRGESR----HVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIM 430
L ES + +KD L A L SGG++ R +AR LA L+M
Sbjct: 120 KELDEIVESSLKKAALWDEVKDRL--HKSALGL----SGGQQQRLCIARALAVKPEVLLM 173
Query: 431 DEPTNDLDFETLDFLERTITQLQG--TILIVSH 461
DEPT+ LD + +E IT+L+ TI+IV+H
Sbjct: 174 DEPTSALDPISTLKIEELITELKKKYTIVIVTH 206
Score = 53.2 bits (128), Expect = 2e-07
Identities = 50/210 (23%), Positives = 94/210 (44%), Gaps = 41/210 (19%)
Query: 1 MSLPILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQS- 59
M +P + + ++ G L+D+ L I + L+G +G GKSTLL+ + +
Sbjct: 3 MKIPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPG 62
Query: 60 ----GNVFLHSSS-------------RLGYLEQNP---DLSHFSTIS------QYIDDTI 93
G V L + R+G + Q P +S + ++ D +
Sbjct: 63 ARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKEL 122
Query: 94 KDTIEAPYSPYSLLKKFNLREQ--DRIEN----LSVGQTRCVALMKMLISRPDILILDEP 147
+ +E+ LKK L ++ DR+ LS GQ + + + + L +P++L++DEP
Sbjct: 123 DEIVESS------LKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEP 176
Query: 148 TNHLDFRTIHWMEQEL--LKINSALIFVSH 175
T+ LD + +E+ + LK ++ V+H
Sbjct: 177 TSALDPISTLKIEELITELKKKYTIVIVTH 206
>gnl|CDD|37566 KOG2355, KOG2355, KOG2355, Predicted ABC-type transport, ATPase
component/CCR4 associated factor [General function
prediction only, Transcription].
Length = 291
Score = 63.1 bits (153), Expect = 2e-10
Identities = 65/268 (24%), Positives = 109/268 (40%), Gaps = 39/268 (14%)
Query: 299 VVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKRED 358
+ DF+L + G +VG NGAGKTTLLK+L+GK + G +++ +
Sbjct: 29 IFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGK------HMVGGGVVQVLGRSAFHDT 82
Query: 359 IDPDKSLASYLTGSSGDSLMVRGESRH-----VAGYIKDFLF-HPDQAHSL--------- 403
SYL G ++ + GE I P++ L
Sbjct: 83 SLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDIDLR 142
Query: 404 --MKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDF----ETLDFLERTITQLQGTIL 457
M +S G++ R + L +PF L++DE T DLD + L+FL+ Q TI+
Sbjct: 143 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIV 202
Query: 458 IVSHDRDFLDRTVTSTIAAQNIEDPNGYWIKYAGGYSDMLVQQKKSHPTPQKKNPPAQSL 517
+H D L+ T + ++ + + Y + K+ +P + L
Sbjct: 203 YATHIFDGLETWPTHLVYIKSGK------LVDNLKYQKI----KEFSTSPNLLSTVESWL 252
Query: 518 QEETVKKEKKQKRKNRLSYSQKLLLERL 545
++E K K+ RK + + +LE L
Sbjct: 253 RKEN--KNNKKTRKEKKNSLHPPVLESL 278
Score = 50.4 bits (120), Expect = 2e-06
Identities = 60/255 (23%), Positives = 103/255 (40%), Gaps = 27/255 (10%)
Query: 20 LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAG--ITEPQSGNVFLHSSSRLGYLEQNP 77
+ D L + R LVG NG+GK+TLLKI +G + V S+ LE +
Sbjct: 29 IFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSG 88
Query: 78 DLSHFST-----------ISQYIDDTIKDTIEA-----PYSPYSLLKKFNLREQDRIENL 121
DLS+ + D + + I P L+ ++ + R+ +
Sbjct: 89 DLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDIDLRWRMHKV 148
Query: 122 SVGQTRCVALMKMLISRPDILILDEPTNHLDF----RTIHWMEQELLKINSALIFVSHDR 177
S GQ R V + L+ +L+LDE T LD + ++++E + + +++ +H
Sbjct: 149 SDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIF 208
Query: 178 RFLETLSTTTVWLDRGCLHHL-----DQGFAYFESWKKNILQQEQIRYHNLKKKNEAEKE 232
LET T V++ G L + F+ + + + N KK + +K
Sbjct: 209 DGLETWPTHLVYIKSGKLVDNLKYQKIKEFSTSPNLLSTVESWLRKENKNNKKTRKEKKN 268
Query: 233 WLRYGVTARRKRNVR 247
L V KR+ R
Sbjct: 269 SLHPPVLESLKRSSR 283
>gnl|CDD|35279 KOG0056, KOG0056, KOG0056, Heavy metal exporter HMT1, ABC
superfamily [Inorganic ion transport and metabolism].
Length = 790
Score = 62.7 bits (152), Expect = 3e-10
Identities = 50/196 (25%), Positives = 92/196 (46%), Gaps = 21/196 (10%)
Query: 285 LEADKITKQYDDRL-VVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL 343
+E +T YD V+ D S + G+ + +VGP+GAGK+T+++LL + G IT+
Sbjct: 538 IEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITI 597
Query: 344 -GTNLKIATIDQKREDID--PDKSL---------ASYLTGSSGDSLMVRGESRHVAGYIK 391
G +++ T R I P ++ Y S+ + + + A
Sbjct: 598 DGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVY--AAAKAAQIHD 655
Query: 392 DFLFHPDQAHSLMKH----LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLER 447
L P+ ++ + LSGGEK R +AR + + + +++DE T+ LD T ++
Sbjct: 656 RILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQA 715
Query: 448 TITQLQG--TILIVSH 461
+ +L T ++V+H
Sbjct: 716 ALARLCANRTTIVVAH 731
Score = 57.3 bits (138), Expect = 1e-08
Identities = 58/245 (23%), Positives = 100/245 (40%), Gaps = 60/245 (24%)
Query: 17 GIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSG----------NVFLHS 66
G +L D+ +++P + + LVG +G+GKST++++ + SG NV S
Sbjct: 550 GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSS 609
Query: 67 -SSRLGYLEQNPDLSHFSTISQYIDDTIKDTI---------EAPYSP----------YSL 106
S +G + Q+ L +DTI I E Y+
Sbjct: 610 LRSSIGVVPQDTVL---------FNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQF 660
Query: 107 LKKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKI 166
+ +N R +R LS G+ + VA+ + ++ P I++LDE T+ LD T ++ L ++
Sbjct: 661 PEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARL 720
Query: 167 --NSALIFVSHDRRFLETLSTTT-----VWLDRGCL-----HH---LDQGFAYFESWKKN 211
N I V+H LST + + G + H G AY + W+
Sbjct: 721 CANRTTIVVAH------RLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQAQ 774
Query: 212 ILQQE 216
+
Sbjct: 775 QAMGK 779
>gnl|CDD|33894 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 62.3 bits (151), Expect = 4e-10
Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 19/183 (10%)
Query: 303 FSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLG----TNLKIATIDQKRED 358
S + GE + +VGPNGAGK+TLL + G G I + + R
Sbjct: 18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAY 76
Query: 359 IDPDKSLASYLTGSSGDSLMVRGESRHVA-GYIKDFLFHPDQAHSLMKHLSGGEKMRAIV 417
+ ++ + +L ++R + L D+ LSGGE R +
Sbjct: 77 LSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRL 136
Query: 418 ARVLAQPF-------NFLIMDEPTNDLDFETLDFLERTITQLQG---TILIVSHDRDFLD 467
A V+ Q L++DEP N LD L+R ++ L I++ SHD L+
Sbjct: 137 AAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHD---LN 193
Query: 468 RTV 470
T+
Sbjct: 194 HTL 196
Score = 39.2 bits (91), Expect = 0.003
Identities = 47/172 (27%), Positives = 70/172 (40%), Gaps = 33/172 (19%)
Query: 32 ERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL-------HSSSRL----GYLEQNPDLS 80
E + LVG NG+GKSTLL AG+T SG++ S++ L YL Q
Sbjct: 26 EILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPP 84
Query: 81 HFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLREQ--DRIENLSVGQTRCVALMKMLIS- 137
+ Y+ D + L ++ LS G+ + V L +++
Sbjct: 85 FAMPVWHYLTLHQPDKTRTELLND-VAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQI 143
Query: 138 RPDI------LILDEPTNHLD-------FRTIHWMEQELLKINSALIFVSHD 176
PD L+LDEP N LD R + + Q+ L A++ SHD
Sbjct: 144 TPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGL----AIVMSSHD 191
>gnl|CDD|32537 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 60.8 bits (147), Expect = 1e-09
Identities = 56/196 (28%), Positives = 99/196 (50%), Gaps = 18/196 (9%)
Query: 284 VLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIK-------- 335
+LE+ + ++ +R V+++ +L I G+ + +VG +GAGKTTLL+++ G K
Sbjct: 383 ILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYR 442
Query: 336 PDCGFITLGTNLKIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLF 395
PD G + + N A I + E + ++ +L +GD L E + AG L+
Sbjct: 443 PDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGD-LNAAVEILNRAGLSDAVLY 501
Query: 396 HPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQL--- 452
LS G+K RA +A++LA+ N L++DE LD T + R I++L
Sbjct: 502 -----RRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELARE 556
Query: 453 -QGTILIVSHDRDFLD 467
T+++V+H + +
Sbjct: 557 AGITLIVVTHRPEVGN 572
Score = 55.8 bits (134), Expect = 4e-08
Identities = 41/182 (22%), Positives = 80/182 (43%), Gaps = 13/182 (7%)
Query: 20 LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGYLEQN--- 76
+L+++ L IKP + + +VG +G+GK+TLL++ G + + + S ++ +
Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSA 457
Query: 77 --PDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNL----REQDRIENLSVGQTRCVA 130
P I + ++ + +L + L + + LS GQ
Sbjct: 458 LIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAK 517
Query: 131 LMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKI----NSALIFVSHDRRFLETLSTT 186
L K+L RP++L++DE HLD T + +++ ++ LI V+H L
Sbjct: 518 LAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPD 577
Query: 187 TV 188
T+
Sbjct: 578 TL 579
>gnl|CDD|31298 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 60.3 bits (146), Expect = 2e-09
Identities = 49/211 (23%), Positives = 81/211 (38%), Gaps = 44/211 (20%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL-----------HSSSR 69
L + L I + + ++G NG+GKSTLL AG +P SG + + ++
Sbjct: 22 LNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANL 81
Query: 70 LGYLEQNPDLSHFS--TISQYI---DDTIKDTIEAPYSPYSLLKKFNL-----------R 113
L + Q+P TI + + + K + F R
Sbjct: 82 LARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENR 141
Query: 114 EQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINSALIFV 173
DRI LS GQ + ++L+ + P IL+LDE T LD +T A +
Sbjct: 142 LSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKT-------------AEFVM 188
Query: 174 SHDRRFLETLSTTTVWLDRGCLHHLDQGFAY 204
+ +E TT+ + H+++ Y
Sbjct: 189 ELTAKIVEEHKLTTLMVT----HNMEDALDY 215
Score = 57.6 bits (139), Expect = 9e-09
Identities = 48/198 (24%), Positives = 89/198 (44%), Gaps = 25/198 (12%)
Query: 295 DDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-GTNLKIATID 353
++ + SL I G+ + ++G NGAGK+TLL + G +KP G I + G ++ ++
Sbjct: 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVA 76
Query: 354 QKREDI-----DPDKSLASYLTGSSGDSL-MVRGESRHVAGYIKDFLFHPDQA------- 400
++ + DP A LT +L RG+ R ++ + + +
Sbjct: 77 KRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGL 136
Query: 401 ------HSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFL----ERTIT 450
+ LSGG++ + P L++DE T LD +T +F+ + +
Sbjct: 137 GLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVE 196
Query: 451 QLQGTILIVSHD-RDFLD 467
+ + T L+V+H+ D LD
Sbjct: 197 EHKLTTLMVTHNMEDALD 214
>gnl|CDD|72991 cd03232, ABC_PDR_domain2, The pleiotropic drug resistance-like
(PDR) family of ATP-binding cassette (ABC) transporters.
PDR is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 192
Score = 59.8 bits (145), Expect = 2e-09
Identities = 50/194 (25%), Positives = 78/194 (40%), Gaps = 45/194 (23%)
Query: 20 LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQ--SGNVFLHSSSR-------L 70
LL ++ +KP L+G +G+GK+TLL + AG +G + ++
Sbjct: 22 LLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRST 81
Query: 71 GYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLREQDRIENLSVGQTRCVA 130
GY+EQ S T+ + +L LR LSV Q + +
Sbjct: 82 GYVEQQDVHSPNLTVRE-----------------ALRFSALLRG------LSVEQRKRLT 118
Query: 131 LMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKIN-------------SALIFVSHDR 177
+ L ++P IL LDEPT+ LD + + + + L K+ SA IF DR
Sbjct: 119 IGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDR 178
Query: 178 RFLETLSTTTVWLD 191
L TV+
Sbjct: 179 LLLLKRGGKTVYFG 192
Score = 36.7 bits (85), Expect = 0.018
Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 37/155 (23%)
Query: 295 DDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQ 354
R ++ + S + G ++G +GAGKTTLL +L G + G IT G I+
Sbjct: 18 GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAG--RKTAGVIT-GE----ILING 70
Query: 355 KREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQA--------HSLMKH 406
+ D + + GY++ H +L++
Sbjct: 71 RPLDKN----------------------FQRSTGYVEQQDVHSPNLTVREALRFSALLRG 108
Query: 407 LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFET 441
LS ++ R + LA + L +DEPT+ LD +
Sbjct: 109 LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQA 143
>gnl|CDD|33907 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 59.3 bits (143), Expect = 3e-09
Identities = 56/225 (24%), Positives = 102/225 (45%), Gaps = 29/225 (12%)
Query: 6 LRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLH 65
++L+ I+ G L D+ L E + L+G +G+GKS+LL++ + P+SG + +
Sbjct: 3 IQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62
Query: 66 SSS-----------------RLGYLEQNPDL-SHFSTISQYIDDTIK----DTIEAPYSP 103
+ +G + Q +L H + I+ + +A
Sbjct: 63 GNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARA 122
Query: 104 YSLLKKFNLRE-QDRIE-NLSVGQTRCVALMKMLISRPDILILDEPTNHLD---FRTIHW 158
LLK+ L+ DR +LS GQ + VA+ + L+ P +L+ DEPT LD I
Sbjct: 123 EKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS 182
Query: 159 MEQELLKINSALIFVSHDRRFLETLSTTTVWLDRGCLHHLDQGFA 203
+ +EL + + V+H+ ++ V+++ G H ++QG A
Sbjct: 183 IIKELAETGITQVIVTHEVEVARKTASRVVYMENG--HIVEQGDA 225
Score = 58.9 bits (142), Expect = 4e-09
Identities = 51/216 (23%), Positives = 91/216 (42%), Gaps = 20/216 (9%)
Query: 283 LVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFIT 342
+ ++ + I Y + D +L GE + ++GP+GAGK++LL++L P G +
Sbjct: 1 MSIQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLN 60
Query: 343 LGTN-------LKIATIDQKREDID---------PDKSLASYLTGSSGDSL-MVRGESRH 385
+ N I R ++ P ++ L + L + + ++
Sbjct: 61 IAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALA 120
Query: 386 VAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFL 445
A + L A HLSGG++ R +AR L L+ DEPT LD E +
Sbjct: 121 RAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQI 180
Query: 446 ERTITQLQG---TILIVSHDRDFLDRTVTSTIAAQN 478
I +L T +IV+H+ + +T + + +N
Sbjct: 181 VSIIKELAETGITQVIVTHEVEVARKTASRVVYMEN 216
>gnl|CDD|35283 KOG0060, KOG0060, KOG0060, Long-chain acyl-CoA transporter, ABC
superfamily (involved in peroxisome organization and
biogenesis) [Lipid transport and metabolism, General
function prediction only].
Length = 659
Score = 59.2 bits (143), Expect = 3e-09
Identities = 57/252 (22%), Positives = 104/252 (41%), Gaps = 46/252 (18%)
Query: 248 RVKELHEIQKQLQ--EQKKSFHSTIQTH----LQTTQSSGKL-----VLEADKITKQ--Y 294
R+ EL E+ L Q+ + L SGK +E ++++
Sbjct: 386 RIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPT 445
Query: 295 DDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLL-------TGKIK------------ 335
+ L++++ SL + G+ + I GP+G GKT+LL++L GK+
Sbjct: 446 NGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFF 505
Query: 336 -PDCGFITLGTNLKIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFL 394
P ++TLGT + + I P K+ +S + ++ E+ + G++ +
Sbjct: 506 LPQRPYMTLGT--------LRDQVIYPLKAEDMDSKSASDEDILRILENVQL-GHLLERE 556
Query: 395 --FHPDQAHSLMKHLSGGEKMRAIVARV-LAQPFNFLIMDEPTNDLDFETLDFLERTITQ 451
M LS GE+ R AR+ +P F I+DE T+ + + L R +
Sbjct: 557 GGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKP-KFAILDECTSAVTEDVEGALYRKCRE 615
Query: 452 LQGTILIVSHDR 463
+ T + V H +
Sbjct: 616 MGITFISVGHRK 627
Score = 50.7 bits (121), Expect = 1e-06
Identities = 38/199 (19%), Positives = 82/199 (41%), Gaps = 23/199 (11%)
Query: 5 ILRLDH--ISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNV 62
+ + +S G L++++ L + + + + G +G GK++LL++ G+ G +
Sbjct: 433 AIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKL 492
Query: 63 FLH---SSSRLGYLEQNPDLSHFSTISQYI-DDTIKDTIEAPYSPYSLLKK-FNLR---- 113
L +L Q P ++ + Q I +D S +L+ N++
Sbjct: 493 TKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHL 552
Query: 114 -----------EQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQE 162
+ D ++ LS G+ + +A ++ +P ILDE T+ + + ++
Sbjct: 553 LEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRK 612
Query: 163 LLKINSALIFVSHDRRFLE 181
++ I V H R+ L
Sbjct: 613 CREMGITFISVGH-RKSLW 630
>gnl|CDD|72999 cd03240, ABC_Rad50, The catalytic domains of Rad50 are similar to
the ATP-binding cassette of ABC transporters, but are
not associated with membrane-spanning domains. The
conserved ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence..
Length = 204
Score = 59.1 bits (143), Expect = 4e-09
Identities = 40/173 (23%), Positives = 72/173 (41%), Gaps = 30/173 (17%)
Query: 315 IVGPNGAGKTTLLK----LLTGKIKPDCGFITLGTNLKIATIDQKREDIDPDKSLASYLT 370
IVG NGAGKTT+++ LTG++ P+ K+ + R +
Sbjct: 27 IVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDP--KLIREGEVRAQVK------LAFE 78
Query: 371 GSSGDSLMVRGESRHVAGYIKDFLFHPDQAHSLM----KHLSGGEKM------RAIVARV 420
++G + R +A H +++ + SGGEK+ R +A
Sbjct: 79 NANGKKYTIT---RSLAILENVIFCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAET 135
Query: 421 LAQPFNFLIMDEPTNDLDFETL-----DFLERTITQLQGTILIVSHDRDFLDR 468
L +DEPT +LD E + + +E +Q +++++HD + +D
Sbjct: 136 FGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA 188
Score = 45.6 bits (108), Expect = 4e-05
Identities = 39/172 (22%), Positives = 63/172 (36%), Gaps = 31/172 (18%)
Query: 36 LVGCNGSGKSTL---LKIAAGITEPQSGNVFLHSSSRLG--------YLEQNPDLSHFST 84
+VG NG+GK+T+ LK A P + H + L T
Sbjct: 27 IVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYT 86
Query: 85 ISQYIDDTIKDTIEAPYSPYSLLKKFNLREQDRIENLSVGQT-------RCVALMKMLIS 137
I++ + +++ I + L + R S G+ R AL + S
Sbjct: 87 ITRSL-AILENVI---FCHQGESNWPLLDMRGR---CSGGEKVLASLIIRL-ALAETFGS 138
Query: 138 RPDILILDEPTNHLD-----FRTIHWMEQELLKINSALIFVSHDRRFLETLS 184
IL LDEPT +LD +E+ + N LI ++HD ++
Sbjct: 139 NCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAAD 190
>gnl|CDD|35286 KOG0063, KOG0063, KOG0063, RNAse L inhibitor, ABC superfamily [RNA
processing and modification].
Length = 592
Score = 58.8 bits (142), Expect = 4e-09
Identities = 54/199 (27%), Positives = 88/199 (44%), Gaps = 59/199 (29%)
Query: 29 KPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGYLEQNPD----LSHF-- 82
+P + + LVG NG GKST LKI AG +P LG + PD L++F
Sbjct: 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPN-----------LGRYDNPPDWQEILTYFRG 146
Query: 83 STISQY----IDDTIKDTIEAPYSPY----------SLLKKF----------------NL 112
S + Y ++D +K I+ Y SLL + NL
Sbjct: 147 SELQNYFTKILEDNLKAIIKPQYVDQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNL 206
Query: 113 REQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFR-------TIHWMEQELLK 165
+++ +E LS G+ + A+ + + + D+ + DEP+++LD + TI + L+
Sbjct: 207 LDRE-VEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITI----RSLIN 261
Query: 166 INSALIFVSHDRRFLETLS 184
+ +I V HD L+ LS
Sbjct: 262 PDRYIIVVEHDLSVLDYLS 280
Score = 56.8 bits (137), Expect = 1e-08
Identities = 53/188 (28%), Positives = 78/188 (41%), Gaps = 40/188 (21%)
Query: 310 GECIGIVGPNGAGKTTLLKLLTGKIKPDCG----------------------FIT--LGT 345
G+ +G+VG NG GK+T LK+L GK KP+ G + T L
Sbjct: 100 GQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILED 159
Query: 346 NLKIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQAHSL-- 403
NLK K + +D + + G+ G L + E + D + L
Sbjct: 160 NLKAII---KPQYVD---QIPRAVKGTVGSLLDRKDERDNKEEVCDQL----DLNNLLDR 209
Query: 404 -MKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQGT---ILIV 459
++ LSGGE R +A V Q + + DEP++ LD + TI L I++V
Sbjct: 210 EVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVV 269
Query: 460 SHDRDFLD 467
HD LD
Sbjct: 270 EHDLSVLD 277
Score = 53.4 bits (128), Expect = 2e-07
Identities = 55/195 (28%), Positives = 86/195 (44%), Gaps = 31/195 (15%)
Query: 286 EADKITKQY---DDRLVVKDFSLRIHYG-----ECIGIVGPNGAGKTTLLKLLTGKIKPD 337
D+ T +Y + V DF L I G E I ++G NG GKTT +++L G++KPD
Sbjct: 335 SEDRRTGRYSYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPD 394
Query: 338 CG--FITLGTNLKIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLF 395
G L + K I KRE G+ L + ++ + +
Sbjct: 395 EGGEIPVLNVSYKPQKISPKRE-------------GTVRQLLHTKIRDAYMHPQFVNDVM 441
Query: 396 HPDQAHSLM----KHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFET----LDFLER 447
P Q +++ + LSGGE R +A L +P + ++DEP+ LD E ++R
Sbjct: 442 KPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKR 501
Query: 448 TITQLQGTILIVSHD 462
I + T +V HD
Sbjct: 502 FILHAKKTAFVVEHD 516
Score = 43.7 bits (103), Expect = 1e-04
Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 11/141 (7%)
Query: 20 LLQDVCLSIKP-----KERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGYLE 74
+ D CL IK E I ++G NG+GK+T +++ AG +P G + + Y
Sbjct: 351 TVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLN--VSYKP 408
Query: 75 QNPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKF---NLREQDRIENLSVGQTRCVAL 131
Q T+ Q + I+D P ++K N+ +Q+ ++ LS G+ + VAL
Sbjct: 409 QKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQIENIIDQE-VQGLSGGELQRVAL 467
Query: 132 MKMLISRPDILILDEPTNHLD 152
L D+ ++DEP+ +LD
Sbjct: 468 ALCLGKPADVYLIDEPSAYLD 488
>gnl|CDD|34240 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 58.4 bits (141), Expect = 6e-09
Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 24/177 (13%)
Query: 24 VCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGYLEQNPD--LSH 81
+ L+IK E + L+G NGSGKSTL + G+ +PQSG + L + +
Sbjct: 342 INLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSA---EQLEDYRKL 398
Query: 82 FSTI-SQY--IDDTI-KDTIEAPYSPYSLLKKFNLREQDRIEN-------LSVGQTRCVA 130
FS + S Y D + + +P L++ L + + + LS GQ + +A
Sbjct: 399 FSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLA 458
Query: 131 LMKMLISRPDILILDEPTNHLD--FRTIHWMEQELL----KINSALIFVSHDRRFLE 181
L+ L+ DIL+LDE D FR Q LL + + +SHD +
Sbjct: 459 LLLALLEERDILVLDEWAADQDPAFR--REFYQVLLPLLKEQGKTIFAISHDDHYFI 513
Score = 53.4 bits (128), Expect = 2e-07
Identities = 47/177 (26%), Positives = 78/177 (44%), Gaps = 19/177 (10%)
Query: 304 SLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKREDIDPDK 363
+L I GE + ++G NG+GK+TL LLTG +P G I L + ++ + D K
Sbjct: 343 NLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKP----VSAEQLE-DYRK 397
Query: 364 SLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQAH---------SLMKHLSGGEKMR 414
++ + ++ E + I+ +L + AH S +K LS G+K R
Sbjct: 398 LFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLK-LSTGQKKR 456
Query: 415 AIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQL---QG-TILIVSHDRDFLD 467
+ L + + L++DE D D + + L QG TI +SHD +
Sbjct: 457 LALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFI 513
>gnl|CDD|35288 KOG0065, KOG0065, KOG0065, Pleiotropic drug resistance proteins
(PDR1-15), ABC superfamily [Secondary metabolites
biosynthesis, transport and catabolism].
Length = 1391
Score = 58.0 bits (140), Expect = 7e-09
Identities = 50/197 (25%), Positives = 81/197 (41%), Gaps = 36/197 (18%)
Query: 295 DDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQ 354
++KD S I GE ++GP G+GKTTLLK L GK+ L ++ +I
Sbjct: 126 KKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDN-----FLKSSGEITYNGH 180
Query: 355 KREDIDPDKSLA---------SYLT--------------GSSGDSLMVRGESRHVAGYIK 391
++ P K++A LT GS D + R + + Y+
Sbjct: 181 DLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLL 240
Query: 392 -----DFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFET-LDFL 445
D + +++ +SGGE+ R + +L P + L DE T LD T +
Sbjct: 241 KILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQII 300
Query: 446 E--RTITQLQGTILIVS 460
+ R + + G +VS
Sbjct: 301 KALRQLAHITGATALVS 317
Score = 53.7 bits (129), Expect = 2e-07
Identities = 58/242 (23%), Positives = 89/242 (36%), Gaps = 72/242 (29%)
Query: 20 LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAA-----GITE--------PQSGNVFLHS 66
LL +V + KP L+G +G+GK+TLL + A G E P+ F
Sbjct: 806 LLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARV 865
Query: 67 SSRLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKK--------------FNL 112
S GY+EQ H + T+++++ +S L K L
Sbjct: 866 S---GYVEQQDI--HSPEL------TVRESLR--FSAALRLPKEVSDEEKYEYVEEVIEL 912
Query: 113 REQDRIEN---------LSVGQTRCVALMKMLISRPD-ILILDEPTNHLDFRTIHWMEQE 162
E + LS Q + + + L++ P IL LDEPT+ LD + +
Sbjct: 913 LELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAA-AIVMR 971
Query: 163 LLK------------IN--SALIFVSHDRRFLETLSTTTVW---LDRGCLHHLDQGFAYF 205
L+ I+ S IF + D L TV+ L ++ YF
Sbjct: 972 FLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIE----YF 1027
Query: 206 ES 207
ES
Sbjct: 1028 ES 1029
Score = 47.9 bits (114), Expect = 8e-06
Identities = 54/205 (26%), Positives = 83/205 (40%), Gaps = 38/205 (18%)
Query: 5 ILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEP---QSGN 61
ILR+ I +L+D+ IKP E ++G GSGK+TLLK AG + SG
Sbjct: 116 ILRMLGKRKK-KKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGE 174
Query: 62 VFL--------HSSSRLGYLEQN----PDLSHFSTI---------SQYIDDTIKDTIEAP 100
+ + Y + P+L+ T+ D+ + A
Sbjct: 175 ITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYDEVSRREKLAA 234
Query: 101 YSPYSLLKKFNLRE-------QDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLD- 152
+ Y LLK L D + +S G+ + V++ +ML+ IL DE T LD
Sbjct: 235 MTDY-LLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDS 293
Query: 153 ---FRTIHWMEQELLKINSALIFVS 174
F+ I + ++L I A VS
Sbjct: 294 STAFQIIKAL-RQLAHITGATALVS 317
Score = 38.7 bits (90), Expect = 0.005
Identities = 53/276 (19%), Positives = 99/276 (35%), Gaps = 49/276 (17%)
Query: 220 YHNLKKKNEAEKEWLRYGVTARRKRN--VRRVKELHEIQKQLQEQKKSFHSTIQTHLQTT 277
Y KK+ A + + + K +++L + Q + + + + +
Sbjct: 728 YLKPLKKSGAILVFKKGKEKKKVKSAGSSSEIEKLDDSSHQEKNKMVLPFTPLSLTFKDV 787
Query: 278 QSSGKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLL------- 330
L E + Q R ++ + S G ++G +GAGKTTLL +L
Sbjct: 788 FYWVDLPYE---MPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGG 844
Query: 331 --TGKIKPD------------CGFITLGTNLKIATIDQKREDIDPDKSL--ASYLTGSSG 374
G I G++ ++ + + +SL ++ L
Sbjct: 845 YIEGDILISGFPKDQETFARVSGYVE-QQDIHSPELTVR-------ESLRFSAALRLPKE 896
Query: 375 DSLMVRGESRHVAGYIKDFLFHPDQAHSLM----KHLSGGEKMRAIVA-RVLAQPFNFLI 429
S E + + L + A +L+ LS ++ R + ++A P + L
Sbjct: 897 VSD---EEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILF 953
Query: 430 MDEPTNDLDFET----LDFLERTITQLQGTILIVSH 461
+DEPT+ LD + + FL + Q TIL H
Sbjct: 954 LDEPTSGLDSQAAAIVMRFLRKLADTGQ-TILCTIH 988
>gnl|CDD|33909 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 55.0 bits (132), Expect = 6e-08
Identities = 46/195 (23%), Positives = 84/195 (43%), Gaps = 25/195 (12%)
Query: 24 VCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSS-------------RL 70
V +++ + + ++G NGSGKSTL K+ AG+ EP SG + ++ R+
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRM 91
Query: 71 GYLEQNPDLSHFSTISQYIDDTIK--------DTIEAPYSPYSLLKKFNLREQDRIENLS 122
+ + N L+ I Q +D ++ + + ++ L+
Sbjct: 92 IFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLA 151
Query: 123 VGQTRCVALMKMLISRPDILILDEPTNHLDF----RTIHWMEQELLKINSALIFVSHDRR 178
GQ + VAL + LI RP I+I DE LD + I+ M + K + I+V+
Sbjct: 152 PGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIG 211
Query: 179 FLETLSTTTVWLDRG 193
++ +S + + G
Sbjct: 212 MIKHISDQVLVMHEG 226
Score = 53.4 bits (128), Expect = 2e-07
Identities = 46/178 (25%), Positives = 71/178 (39%), Gaps = 23/178 (12%)
Query: 284 VLEADKITKQYDDRL---------VVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKI 334
+LE ++K + R VK S + G+ + I+G NG+GK+TL K+L G I
Sbjct: 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMI 63
Query: 335 KPDCGFITL-GTNLKIATIDQKREDI-----DPDKSLASYLTGSS--------GDSLMVR 380
+P G I + L + + I DP+ SL L L
Sbjct: 64 EPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPE 123
Query: 381 GESRHVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD 438
+ + ++ PD A+ L+ G+K R +AR L +I DE LD
Sbjct: 124 QRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLD 181
>gnl|CDD|72981 cd03222, ABC_RNaseL_inhibitor, The ABC ATPase RNase L inhibitor
(RLI) is a key enzyme in ribosomal biogenesis, formation
of translation preinitiation complexes, and assembly of
HIV capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology..
Length = 177
Score = 54.6 bits (131), Expect = 7e-08
Identities = 47/162 (29%), Positives = 60/162 (37%), Gaps = 54/162 (33%)
Query: 310 GECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKREDIDPDKSLASYL 369
GE IGIVGPNG GKTT +K+L G++ P+ T K + ID
Sbjct: 25 GEVIGIVGPNGTGKTTAVKILAGQLIPNGD----NDEWDGITPVYKPQYID--------- 71
Query: 370 TGSSGDSLMVRGESRHVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLI 429
LSGGE R +A L + F +
Sbjct: 72 -------------------------------------LSGGELQRVAIAAALLRNATFYL 94
Query: 430 MDEPTNDLDFETLDFLERTITQL----QGTILIVSHDRDFLD 467
DEP+ LD E R I +L + T L+V HD LD
Sbjct: 95 FDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136
Score = 43.4 bits (102), Expect = 2e-04
Identities = 44/164 (26%), Positives = 61/164 (37%), Gaps = 53/164 (32%)
Query: 28 IKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGYLEQNPDLSHFSTISQ 87
+K E I +VG NG+GK+T +KI AG P N D Q
Sbjct: 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEW-------------DGITPVYKPQ 68
Query: 88 YIDDTIKDTIEAPYSPYSLLKKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEP 147
YID LS G+ + VA+ L+ + DEP
Sbjct: 69 YID------------------------------LSGGELQRVAIAAALLRNATFYLFDEP 98
Query: 148 TNHLDF-------RTIHWMEQELLKINSALIFVSHDRRFLETLS 184
+ +LD R I + +E K +AL+ V HD L+ LS
Sbjct: 99 SAYLDIEQRLNAARAIRRLSEEGKK--TALV-VEHDLAVLDYLS 139
>gnl|CDD|177053 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 54.3 bits (131), Expect = 1e-07
Identities = 54/221 (24%), Positives = 96/221 (43%), Gaps = 48/221 (21%)
Query: 1 MSLPILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAG-----IT 55
+ PIL + ++ A++ ++L+ + LSI E ++G NGSGKSTL K+ AG I
Sbjct: 3 KNKPILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKIL 62
Query: 56 EPQSGNVFLHSSSRLGYLEQNPDL-SHFSTI--SQYIDD----TIKDTIEAPYSPYSLLK 108
E G++ S L+ P+ +H QY + + D + Y+ S K
Sbjct: 63 E---GDILFKGES---ILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYN--SKRK 114
Query: 109 KFNLREQDRIENLSVGQ-------------TRCV------------ALMKMLISRPDILI 143
L E D +E L + +R V +++M + ++ I
Sbjct: 115 FQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAI 174
Query: 144 LDEPTNHLD---FRTIHWMEQELLKINSALIFVSHDRRFLE 181
LDE + LD + I +L+ +++I ++H +R L+
Sbjct: 175 LDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLD 215
Score = 43.1 bits (102), Expect = 2e-04
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 282 KLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTG 332
K +LE + ++ ++K +L I+ GE I+GPNG+GK+TL K++ G
Sbjct: 5 KPILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAG 55
>gnl|CDD|73050 cd03291, ABCC_CFTR1, The CFTR subfamily domain 1. The cystic
fibrosis transmembrane regulator (CFTR), the product of
the gene mutated in patients with cystic fibrosis, has
adapted the ABC transporter structural motif to form a
tightly regulated anion channel at the apical surface of
many epithelia. Use of the term assembly of a
functional ion channel implies the coming together of
subunits, or at least smaller not-yet functional
components of the active whole. In fact, on the basis
of current knowledge only the CFTR polypeptide itself is
required to form an ATP- and protein kinase A-dependent
low-conductance chloride channel of the type present in
the apical membrane of many epithelial cells. CFTR
displays the typical organization (IM-ABC)2 and carries
a characteristic hydrophilic R-domain that separates
IM1-ABC1 from IM2-ABC2..
Length = 282
Score = 49.6 bits (118), Expect = 3e-06
Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 29/154 (18%)
Query: 20 LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGYLEQNPDL 79
+L+++ L I+ E + + G GSGK++LL + G EP G + S R+ + Q
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKI--KHSGRISFSSQ---- 105
Query: 80 SHFSTISQYIDDTIKDTIEA--PYSPY---SLLKKFNLR-------EQDRIE------NL 121
S + TIK+ I Y Y S++K L E+D L
Sbjct: 106 -----FSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITL 160
Query: 122 SVGQTRCVALMKMLISRPDILILDEPTNHLDFRT 155
S GQ ++L + + D+ +LD P +LD T
Sbjct: 161 SGGQRARISLARAVYKDADLYLLDSPFGYLDVFT 194
Score = 49.2 bits (117), Expect = 3e-06
Identities = 38/147 (25%), Positives = 72/147 (48%), Gaps = 8/147 (5%)
Query: 299 VVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKRED 358
V+K+ +L+I GE + I G G+GKT+LL L+ G+++P G I + ++ +
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSS---QFSW 108
Query: 359 IDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQAHSLMKH----LSGGEKMR 414
I P + + G S D + + +D P++ ++++ LSGG++ R
Sbjct: 109 IMPGTIKENIIFGVSYDEYRYKSVVK-ACQLEEDITKFPEKDNTVLGEGGITLSGGQRAR 167
Query: 415 AIVARVLAQPFNFLIMDEPTNDLDFET 441
+AR + + + ++D P LD T
Sbjct: 168 ISLARAVYKDADLYLLDSPFGYLDVFT 194
>gnl|CDD|35287 KOG0064, KOG0064, KOG0064, Peroxisomal long-chain acyl-CoA
transporter, ABC superfamily [Lipid transport and
metabolism].
Length = 728
Score = 49.2 bits (117), Expect = 3e-06
Identities = 36/171 (21%), Positives = 72/171 (42%), Gaps = 15/171 (8%)
Query: 20 LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGYLEQNPDL 79
L+ + I+P + + G NG GKS+L +I G+ +G + + + + Y+ Q P +
Sbjct: 497 LVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYM 556
Query: 80 SHFSTISQYI-DDTIKDTIEAPYSPYSLLKKFNLREQDRI--------------ENLSVG 124
S + Q I D+ + Y+ L ++ + I + LS G
Sbjct: 557 SGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGG 616
Query: 125 QTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINSALIFVSH 175
+ + + + +M RP +LDE T+ + + Q +L+ ++H
Sbjct: 617 EKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGISLLSITH 667
Score = 42.6 bits (100), Expect = 3e-04
Identities = 38/186 (20%), Positives = 74/186 (39%), Gaps = 34/186 (18%)
Query: 297 RLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTG----------KIKPDCGF------ 340
++V + +I G + I GPNG GK++L ++L G +P+ F
Sbjct: 495 DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRP 554
Query: 341 -ITLGT----NLKIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLF 395
++ GT + + +Q + D+ L + L + ++ R KD
Sbjct: 555 YMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDV-- 612
Query: 396 HPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQGT 455
LSGGEK R +AR+ + ++DE T+ + + + + +
Sbjct: 613 -----------LSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGIS 661
Query: 456 ILIVSH 461
+L ++H
Sbjct: 662 LLSITH 667
>gnl|CDD|73038 cd03279, ABC_sbcCD, SbcCD and other Mre11/Rad50 (MR) complexes are
implicated in the metabolism of DNA ends. They cleave
ends sealed by hairpin structures and are thought to
play a role in removing protein bound to DNA termini..
Length = 213
Score = 47.2 bits (112), Expect = 2e-05
Identities = 42/193 (21%), Positives = 66/193 (34%), Gaps = 41/193 (21%)
Query: 302 DFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKREDIDP 361
DF+ + I GP GAGK+T+L +T + G + + R P
Sbjct: 21 DFTG-LDNNGLFLICGPTGAGKSTILDAIT--------YALYGKTPRYGRQENLRSVFAP 71
Query: 362 DKSLASY-LTGSSGDSLMVRGESRHV------------AGYIKDFLFHPDQAHSLMKHLS 408
+ A T G SR + G FL P + LS
Sbjct: 72 GEDTAEVSFTFQLGGKKYRVERSRGLDYDQFTRIVLLPQGEFDRFLARP------VSTLS 125
Query: 409 GGEKMRAIVARVLA----------QPFNFLIMDEPTNDLDFETLDFLERTITQLQGT--- 455
GGE A ++ LA L +DE LD E L+ + + ++
Sbjct: 126 GGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRM 185
Query: 456 ILIVSHDRDFLDR 468
+ ++SH + +R
Sbjct: 186 VGVISHVEELKER 198
>gnl|CDD|33911 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 46.5 bits (110), Expect = 2e-05
Identities = 53/225 (23%), Positives = 90/225 (40%), Gaps = 50/225 (22%)
Query: 299 VVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATID----- 353
V S+ ++ GE G+VG +G+GK+ + K + G K + + ++ ID
Sbjct: 22 AVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDN--WRVTADRMRFDDIDLLRLS 79
Query: 354 --QKREDI---------------DPDKSLASYLTGSSGDSLMVRG--------------E 382
++R+ + DP + + L + + +G E
Sbjct: 80 PRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLI-QNIPAWTYKGRWWQRFGWRKRRAIE 138
Query: 383 SRHVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETL 442
H G IKD H D S L+ GE + ++A LA LI DEPTN ++ T
Sbjct: 139 LLHRVG-IKD---HKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQ 194
Query: 443 DFLERTIT---QLQGT-ILIVSHDRDFLDR---TVTSTIAAQNIE 480
+ R ++ Q T IL++SHD + + + Q +E
Sbjct: 195 AQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVE 239
Score = 36.1 bits (83), Expect = 0.031
Identities = 48/192 (25%), Positives = 80/192 (41%), Gaps = 47/192 (24%)
Query: 15 IGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLG--Y 72
IDLL+ + P+ER LVG N ++ EPQS L S R+G
Sbjct: 70 FDDIDLLR-----LSPRERRKLVGHN---------VSMIFQEPQS---CLDPSERVGRQL 112
Query: 73 LEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLREQDRI-----ENLSVGQTR 127
++ P ++ Q + IE LL + +++ I L+ G+ +
Sbjct: 113 IQNIPAWTYKGRWWQRFGWRKRRAIE-------LLHRVGIKDHKDIMRSYPYELTEGECQ 165
Query: 128 CVALMKMLISRPDILILDEPTNHLD-------FRTIHWMEQELLKINSALIFVSHDRRFL 180
V + L ++P +LI DEPTN ++ FR + + Q N+ ++ +SHD
Sbjct: 166 KVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNS---NTTILLISHD---- 218
Query: 181 ETLSTTTVWLDR 192
L + W D+
Sbjct: 219 --LQMISQWADK 228
>gnl|CDD|72997 cd03238, ABC_UvrA, The excision repair protein UvrA; Nucleotide
excision repair in eubacteria is a process that repairs
DNA damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins, and UvrB having one ATP binding
site that is structurally related to that of helicases..
Length = 176
Score = 44.1 bits (104), Expect = 1e-04
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 30/168 (17%)
Query: 21 LQDVCLSIKPKERICLV-GCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGYLEQNPDL 79
LQ++ +SI P + +V G +GSGKSTL+ N L++S + + P
Sbjct: 11 LQNLDVSI-PLNVLVVVTGVSGSGKSTLV------------NEGLYASGKARLISFLPKF 57
Query: 80 SHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLREQDRIENLSVGQTRCVALMKMLISRP 139
S I D ++ I+ +L +K + LS G+ + V L L S P
Sbjct: 58 SRNKLIFI---DQLQFLIDVGLGYLTLGQKLS--------TLSGGELQRVKLASELFSEP 106
Query: 140 D--ILILDEPTNHLDFRTI-HWMEQ--ELLKINSALIFVSHDRRFLET 182
+ ILDEP+ L + I +E L+ + + +I + H+ L +
Sbjct: 107 PGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS 154
Score = 42.5 bits (100), Expect = 3e-04
Identities = 39/176 (22%), Positives = 68/176 (38%), Gaps = 39/176 (22%)
Query: 300 VKDFSLRIHYGECIGIVGPNGAGKTTLLK--LLTGKIKPDCGFITLGTNLKIATIDQKRE 357
+++ + I + + G +G+GK+TL+ L F+ + K+ IDQ +
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQF 70
Query: 358 DIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIV 417
ID G GY+ Q + LSGGE R +
Sbjct: 71 LID---------VG---------------LGYLT-----LGQK---LSTLSGGELQRVKL 98
Query: 418 ARVLAQPF--NFLIMDEPTNDLDFETLD-FLE--RTITQLQGTILIVSHDRDFLDR 468
A L I+DEP+ L + ++ LE + + L T++++ H+ D L
Sbjct: 99 ASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS 154
>gnl|CDD|30768 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 43.5 bits (102), Expect = 2e-04
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 407 LSGGEKMRAIVARVLA--------QPFNFLIMDEPTNDLDFETLDFLERTITQLQ---GT 455
LSGGE+ A +A LA L +DEP LD E L+ L + +L
Sbjct: 816 LSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQ 875
Query: 456 ILIVSHDRDFLDR 468
I+I+SH + +R
Sbjct: 876 IIIISHVEELKER 888
Score = 35.4 bits (81), Expect = 0.053
Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 11/112 (9%)
Query: 81 HFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLREQDRIENLSVGQTRCV------ALMKM 134
S +S D + TI + ++ ++ E I+ LS G+ AL +
Sbjct: 776 ILSKLSLNRYDLRRLTIRKDGNGGLVVVVYDGGEVRPIKTLSGGERFLASLALRLALSDL 835
Query: 135 LISRP--DILILDEPTNHLDFRTIHWMEQELLKINS---ALIFVSHDRRFLE 181
L R ++L LDEP LD + + + L ++ S +I +SH E
Sbjct: 836 LQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKE 887
>gnl|CDD|33697 COG3910, COG3910, Predicted ATPase [General function prediction
only].
Length = 233
Score = 43.0 bits (101), Expect = 2e-04
Identities = 39/155 (25%), Positives = 57/155 (36%), Gaps = 18/155 (11%)
Query: 315 IVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKREDIDPDKSLASYLTGSSG 374
I G NG+GK+TLL+ + GF G + K E +L Y
Sbjct: 42 ITGENGSGKSTLLEAIAAG----MGFNAAG-----GGKNFKGELDASHSALVDYAKLHKR 92
Query: 375 ----DSLMVRGESR-HVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLI 429
+R ES +VA Y+ + + + H+S GE AI I
Sbjct: 93 KKPPIGFFLRAESFYNVASYLDEADGEANYGGRSLHHMSHGESFLAIFHNRFNGQ-GIYI 151
Query: 430 MDEPTNDLDF-ETLDFLE--RTITQLQGTILIVSH 461
+DEP L L+ L R + I+I +H
Sbjct: 152 LDEPEAALSPSRQLELLAILRDLADSGAQIIIATH 186
Score = 33.3 bits (76), Expect = 0.19
Identities = 40/162 (24%), Positives = 64/162 (39%), Gaps = 39/162 (24%)
Query: 36 LVGCNGSGKSTLLK-IAAGITEPQSGN------------VFLHSSSRLGYLEQNPD---- 78
+ G NGSGKSTLL+ IAAG+ +G L ++L ++ P
Sbjct: 42 ITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKLHKRKKPPIGFFL 101
Query: 79 --LSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLREQDRIENLSVGQTRCVALMKMLI 136
S ++ S Y+D+ EA Y SL S G++ +A+
Sbjct: 102 RAESFYNVAS-YLDEADG---EANYGGRSLHHM------------SHGES-FLAIFHNRF 144
Query: 137 SRPDILILDEPTNHLDFR---TIHWMEQELLKINSALIFVSH 175
+ I ILDEP L + + ++L + +I +H
Sbjct: 145 NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATH 186
>gnl|CDD|72986 cd03227, ABC_Class2, ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterised by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins..
Length = 162
Score = 41.9 bits (98), Expect = 5e-04
Identities = 30/164 (18%), Positives = 49/164 (29%), Gaps = 47/164 (28%)
Query: 315 IVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKREDIDPDKSLASYLTGSSG 374
I GPNG+GK+T+L G G
Sbjct: 26 ITGPNGSGKSTILD--------AIGLALGGAQSATRRRSG-------------------- 57
Query: 375 DSLMVRGESRHVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLA----QPFNFLIM 430
++ + + L LSGGEK + +A +LA +P I+
Sbjct: 58 ------VKAGCIVAAVSAEL------IFTRLQLSGGEKELSALALILALASLKPRPLYIL 105
Query: 431 DEPTNDLDFETLDFLERTI---TQLQGTILIVSHDRDFLDRTVT 471
DE LD L I +++++H + +
Sbjct: 106 DEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELADK 149
Score = 37.2 bits (86), Expect = 0.013
Identities = 31/158 (19%), Positives = 43/158 (27%), Gaps = 40/158 (25%)
Query: 35 CLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGYLEQNPDLSHFSTISQYIDDTIK 94
+ G NGSGKST+L S + G + T Q
Sbjct: 25 IITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQ------- 77
Query: 95 DTIEAPYSPYSLLKKFNLREQDRIENLSVGQTRCVALMKML----ISRPDILILDEPTNH 150
LS G+ AL +L + + ILDE
Sbjct: 78 --------------------------LSGGEKELSALALILALASLKPRPLYILDEIDRG 111
Query: 151 LDFRTIH---WMEQELLKINSALIFVSHDRRFLETLST 185
LD R E L + +I ++H E
Sbjct: 112 LDPRDGQALAEAILEHLVKGAQVIVITHLPELAELADK 149
>gnl|CDD|73049 cd03290, ABCC_SUR1_N, The SUR domain 1. The sulfonylurea receptor
SUR is an ATP transporter of the ABCC/MRP family with
tandem ATPase binding domains. Unlike other ABC
proteins, it has no intrinsic transport function,
neither active nor passive, but associates with the
potassium channel proteins Kir6.1 or Kir6.2 to form the
ATP-sensitive potassium (K(ATP)) channel. Within the
channel complex, SUR serves as a regulatory subunit that
fine-tunes the gating of Kir6.x in response to
alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity..
Length = 218
Score = 40.5 bits (94), Expect = 0.001
Identities = 44/189 (23%), Positives = 79/189 (41%), Gaps = 22/189 (11%)
Query: 300 VKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFI----TLGTNLKIATIDQK 355
+ + ++RI G+ IVG G GK++LL + G+++ G + + +
Sbjct: 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76
Query: 356 REDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIK-----------DFLFHPDQAHSLM 404
+ +L ++ + + G + Y D L DQ
Sbjct: 77 NRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGE 136
Query: 405 K--HLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFL--ERTITQLQG---TIL 457
+ +LSGG++ R VAR L Q N + +D+P + LD D L E + LQ T++
Sbjct: 137 RGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLV 196
Query: 458 IVSHDRDFL 466
+V+H +L
Sbjct: 197 LVTHKLQYL 205
Score = 38.5 bits (89), Expect = 0.005
Identities = 41/193 (21%), Positives = 83/193 (43%), Gaps = 29/193 (15%)
Query: 17 GIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGYLEQN 76
G+ L ++ + I + +VG G GKS+LL G + G V + + +
Sbjct: 13 GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEA 72
Query: 77 PD------LSHFSTISQYIDDTIKDTI--EAPYS--------------PYSLLKKFNLRE 114
+++ + ++ T+++ I +P++ P L F +
Sbjct: 73 TRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQT 132
Query: 115 Q--DRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFR-TIHWMEQELLKI----N 167
+ +R NLS GQ + + + + L +I+ LD+P + LD + H M++ +LK
Sbjct: 133 EIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDK 192
Query: 168 SALIFVSHDRRFL 180
L+ V+H ++L
Sbjct: 193 RTLVLVTHKLQYL 205
>gnl|CDD|73048 cd03289, ABCC_CFTR2, The CFTR subfamily domain 2. The cystic
fibrosis transmembrane regulator (CFTR), the product of
the gene mutated in patients with cystic fibrosis, has
adapted the ABC transporter structural motif to form a
tightly regulated anion channel at the apical surface of
many epithelia. Use of the term assembly of a
functional ion channel implies the coming together of
subunits or at least smaller not-yet functional
components of the active whole. In fact, on the basis
of current knowledge only the CFTR polypeptide itself is
required to form an ATP- and protein kinase A-dependent
low-conductance chloride channel of the type present in
the apical membrane of many epithelial cells. CFTR
displays the typical organization (IM-ABC)2 and carries
a characteristic hydrophilic R-domain that separates
IM1-ABC1 from IM2-ABC2..
Length = 275
Score = 40.0 bits (93), Expect = 0.002
Identities = 63/290 (21%), Positives = 117/290 (40%), Gaps = 63/290 (21%)
Query: 14 TIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTL----LKIAAGITEPQSGNVFLHSSSR 69
T GG +L+++ SI P +R+ L+G GSGKSTL L++ + Q V +S
Sbjct: 13 TEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPL 72
Query: 70 LGYLEQNPDLSHFSTISQYI---DDTIKDTIEAPYSPYS---LLK--------------- 108
+ + F I Q + T + ++ PY +S + K
Sbjct: 73 QKWRKA------FGVIPQKVFIFSGTFRKNLD-PYGKWSDEEIWKVAEEVGLKSVIEQFP 125
Query: 109 -KFNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKIN 167
+ + D LS G + + L + ++S+ IL+LDEP+ HLD T + + L
Sbjct: 126 GQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTL---- 181
Query: 168 SALIFVSHDRRFLETLSTTTVWLDRGCLHHLDQGFAYFESWKKNILQQEQIRYHNLKKKN 227
+ + TV L H ++ A E + ++++ ++R ++ +K
Sbjct: 182 ------------KQAFADCTVIL---SEHRIE---AMLECQRFLVIEENKVRQYDSIQKL 223
Query: 228 EAEKEWLRYGVTA--------RRKRNVRRVKELHEIQKQLQEQKKSFHST 269
EK + ++ RR + + K +IQ +E ++ T
Sbjct: 224 LNEKSHFKQAISPSDRLKLFPRRNSSKSKRKPRPQIQALQEETEEEVQDT 273
Score = 37.7 bits (87), Expect = 0.009
Identities = 58/268 (21%), Positives = 107/268 (39%), Gaps = 35/268 (13%)
Query: 285 LEADKITKQYDD--RLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFIT 342
+ +T +Y + V+++ S I G+ +G++G G+GK+TLL + +
Sbjct: 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQI 62
Query: 343 LGTNLKIATIDQKREDIDPDKSLASYLTGS-----------SGDSLMVRGESRHVAGYIK 391
G + + + R+ +G+ S + + E + I+
Sbjct: 63 DGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIE 122
Query: 392 DFLFHPDQAHSLMKH----LSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLER 447
F P Q ++ LS G K +AR + L++DEP+ LD T + +
Sbjct: 123 QF---PGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRK 179
Query: 448 TITQLQG--TILIVSHD-------RDFL---DRTVTSTIAAQNIEDPNGYWIKYAGGYSD 495
T+ Q T+++ H + FL + V + Q + + + K A SD
Sbjct: 180 TLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSH-FKQAISPSD 238
Query: 496 --MLVQQKKSHPTPQKKNPPAQSLQEET 521
L ++ S + +K P Q+LQEET
Sbjct: 239 RLKLFPRRNSSKSKRKPRPQIQALQEET 266
>gnl|CDD|73047 cd03288, ABCC_SUR2, The SUR domain 2. The sulfonylurea receptor
SUR is an ATP binding cassette (ABC) protein of the
ABCC/MRP family. Unlike other ABC proteins, it has no
intrinsic transport function, neither active nor
passive, but associates with the potassium channel
proteins Kir6.1 or Kir6.2 to form the ATP-sensitive
potassium (K(ATP)) channel. Within the channel complex,
SUR serves as a regulatory subunit that fine-tunes the
gating of Kir6.x in response to alterations in cellular
metabolism. It constitutes a major pharmaceutical
target as it binds numerous drugs, K(ATP) channel
openers and blockers, capable of up- or down-regulating
channel activity..
Length = 257
Score = 39.6 bits (92), Expect = 0.002
Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 24/158 (15%)
Query: 20 LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF----------LHS-SS 68
+L+ V IKP +++ + G GSGKS+L + + G + LH+ S
Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95
Query: 69 RLGYLEQNPDLSHFS-TISQYIDDTIKDTIEAPYSPYSLLKKFNLREQ-----DRI---- 118
RL + Q+P L FS +I +D K T + + + + N+ + D +
Sbjct: 96 RLSIILQDPIL--FSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEG 153
Query: 119 -ENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRT 155
EN SVGQ + L + + + ILI+DE T +D T
Sbjct: 154 GENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMAT 191
Score = 35.4 bits (81), Expect = 0.045
Identities = 52/208 (25%), Positives = 85/208 (40%), Gaps = 48/208 (23%)
Query: 293 QYDDRL--VVKDFSLRIHYGECIGIVGPNGAGKTTL-------LKLLTGKIKPDCGFI-- 341
+Y++ L V+K I G+ +GI G G+GK++L + + GKI D I
Sbjct: 28 RYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISK 87
Query: 342 ----TLGTNLKIATID------QKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIK 391
TL + L I D R ++DP+ + D L E + +K
Sbjct: 88 LPLHTLRSRLSIILQDPILFSGSIRFNLDPECK-------CTDDRLWEALEIAQLKNMVK 140
Query: 392 DFLFHPDQAHSLM----KHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLER 447
P +++ ++ S G++ +AR + + LIMDE T +D T + L++
Sbjct: 141 SL---PGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQK 197
Query: 448 TITQLQGTILIVSHDRDFLDRTVTSTIA 475
+ F DRTV TIA
Sbjct: 198 VVMTA------------FADRTVV-TIA 212
>gnl|CDD|30975 COG0630, VirB11, Type IV secretory pathway, VirB11 components, and
related ATPases involved in archaeal flagella
biosynthesis [Cell motility and secretion /
Intracellular trafficking and secretion].
Length = 312
Score = 36.9 bits (85), Expect = 0.017
Identities = 20/82 (24%), Positives = 28/82 (34%), Gaps = 9/82 (10%)
Query: 296 DRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQK 355
L I + I I G +GKTTLL L I P+ +I TI+
Sbjct: 129 SPEQAAYLWLAIEARKSIIICGGTASGKTTLLNALLDFIPPE---------ERIVTIEDT 179
Query: 356 REDIDPDKSLASYLTGSSGDSL 377
E P ++ +T
Sbjct: 180 PELKLPHENWVQLVTREGESGS 201
>gnl|CDD|73030 cd03271, ABC_UvrA_II, The excision repair protein UvrA domain II;
Nucleotide excision repair in eubacteria is a process
that repairs DNA damage by the removal of a 12-13-mer
oligonucleotide containing the lesion. Recognition and
cleavage of the damaged DNA is a multistep ATP-dependent
reaction that requires the UvrA, UvrB, and UvrC
proteins. Both UvrA and UvrB are ATPases, with UvrA
having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins
and UvrB having one ATP binding site that is
structurally related to that of helicases..
Length = 261
Score = 35.6 bits (82), Expect = 0.038
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 407 LSGGEKMRAIVARVLAQPFN---FLIMDEPTNDLDFET----LDFLERTITQLQGTILIV 459
LSGGE R +A+ L++ I+DEPT L F L+ L+R + T++++
Sbjct: 170 LSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQR-LVDKGNTVVVI 228
Query: 460 SHDRD 464
H+ D
Sbjct: 229 EHNLD 233
Score = 28.2 bits (63), Expect = 7.5
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLL 48
L+++ + I C+ G +GSGKS+L+
Sbjct: 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLI 38
>gnl|CDD|133370 cd04170, EF-G_bact, Elongation factor G (EF-G) subfamily.
Translocation is mediated by EF-G (also called
translocase). The structure of EF-G closely resembles
that of the complex between EF-Tu and tRNA. This is an
example of molecular mimicry; a protein domain evolved
so that it mimics the shape of a tRNA molecule. EF-G in
the GTP form binds to the ribosome, primarily through
the interaction of its EF-Tu-like domain with the 50S
subunit. The binding of EF-G to the ribosome in this
manner stimulates the GTPase activity of EF-G. On GTP
hydrolysis, EF-G undergoes a conformational change that
forces its arm deeper into the A site on the 30S
subunit. To accommodate this domain, the peptidyl-tRNA
in the A site moves to the P site, carrying the mRNA and
the deacylated tRNA with it. The ribosome may be
prepared for these rearrangements by the initial binding
of EF-G as well. The dissociation of EF-G leaves the
ribosome ready to accept the next aminoacyl-tRNA into
the A site. This group contains only bacterial members.
Length = 268
Score = 35.6 bits (83), Expect = 0.038
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 312 CIGIVGPNGAGKTTLL-KLL--TGKIK 335
I +VG +G+GKTTL LL TG I
Sbjct: 1 NIALVGHSGSGKTTLAEALLYATGAID 27
Score = 28.3 bits (64), Expect = 7.3
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 34 ICLVGCNGSGKSTLL 48
I LVG +GSGK+TL
Sbjct: 2 IALVGHSGSGKTTLA 16
>gnl|CDD|73037 cd03278, ABC_SMC_barmotin, Barmotin is a tight junction-associated
protein expressed in rat epithelial cells which is
thought to have an important regulatory role in tight
junction barrier function. Barmotin belongs to the SMC
protein family. SMC proteins are large (approximately
110 to 170 kDa), and each is arranged into five
recognizable domains. Amino-acid sequence homology of
SMC proteins between species is largely confined to the
amino- and carboxy-terminal globular domains. The
amino-terminal domain contains a 'Walker A'
nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B' motif,
and a motif with homology to the signature sequence of
the ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these
sequences. In eukaryotic cells, the proteins are found
as heterodimers of SMC1 paired with SMC3, SMC2 with
SMC4, and SMC5 with SMC6 (formerly known as Rad18)..
Length = 197
Score = 35.4 bits (82), Expect = 0.041
Identities = 34/171 (19%), Positives = 63/171 (36%), Gaps = 41/171 (23%)
Query: 314 GIVGPNGAGKTTLL------------KLLTGKIKPDCGFITLGTNLKIATIDQKREDIDP 361
IVGPNG+GK+ ++ K L G+ D I G+ +
Sbjct: 26 AIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSD--VIFAGSETR------------K 71
Query: 362 DKSLAS---YLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQAHSLMKHLSGGEK----MR 414
+ A S G ++ G + + + P + + LSGGEK +
Sbjct: 72 PANFAEVTLTFDNSDGRYSIIS------QGDVSEIIEAPGKKVQRLSLLSGGEKALTALA 125
Query: 415 AIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQGT--ILIVSHDR 463
+ A +P F ++DE LD ++ R + + ++++H +
Sbjct: 126 LLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRK 176
>gnl|CDD|146080 pfam03266, DUF265, Protein of unknown function, DUF265.
Length = 168
Score = 35.6 bits (83), Expect = 0.042
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 312 CIGIVGPNGAGKTTLLKLLTGKIKPD----CGFIT 342
I I GP G GKTTL+K + +K + GF T
Sbjct: 1 RIFITGPPGVGKTTLVKKVIELLKSEGVKVGGFYT 35
>gnl|CDD|48380 cd03116, MobB, Molybdenum is an essential trace element in the form
of molybdenum cofactor (Moco) which is associated with
the metabolism of nitrogen, carbon and sulfur by redox
active enzymes. In E. coli, the synthesis of Moco
involves genes from several loci: moa, mob, mod, moe and
mog. The mob locus contains mobA and mobB genes. MobB
catalyzes the attachment of the guanine dinucleotide to
molybdopterin..
Length = 159
Score = 35.6 bits (82), Expect = 0.042
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
Query: 313 IGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKREDIDPDK 363
IG VG +G+GKTTLL+ L + L++A I D D D
Sbjct: 4 IGFVGYSGSGKTTLLEKLIPALS--------ARGLRVAVIKHDHHDFDIDT 46
>gnl|CDD|29996 cd01130, VirB11-like_ATPase, Type IV secretory pathway component
VirB11, and related ATPases. The homohexamer, VirB11 is
one of eleven Vir proteins, which are required for
T-pilus biogenesis and virulence in the transfer of
T-DNA from the Ti (tumor-inducing) plasmid of bacterial
to plant cells. The pilus is a fibrous cell surface
organelle, which mediates adhesion between bacteria
during conjugative transfer or between bacteria and host
eukaryotic cells during infection. VirB11- related
ATPases include the archaeal flagella biosynthesis
protein and the pilus assembly proteins CpaF/TadA and
TrbB. This alignment contains the C-terminal domain,
which is the ATPase..
Length = 186
Score = 35.6 bits (82), Expect = 0.044
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 307 IHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL 343
+ + I I G G+GKTTLL L I PD IT+
Sbjct: 22 VEARKNILISGGTGSGKTTLLNALLAFIPPDERIITI 58
>gnl|CDD|30527 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 34.0 bits (78), Expect = 0.13
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 407 LSGGEKMRAIVARVLAQPFN---FLIMDEPTNDLDFETLDFLERTITQL--QG-TILIVS 460
LSGGE R +A+ L++ I+DEPT L F+ + L + +L +G T++++
Sbjct: 823 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIE 882
Query: 461 HDRD 464
H+ D
Sbjct: 883 HNLD 886
Score = 29.8 bits (67), Expect = 2.6
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 407 LSGGEKMRAIVARVL-AQPFNFL-IMDEPTNDLDFETLDFLERTITQLQ---GTILIVSH 461
LSGGE R +A + + L ++DEP+ L + L T+ +L+ T+++V H
Sbjct: 482 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEH 541
Query: 462 DRD 464
D D
Sbjct: 542 DED 544
Score = 28.2 bits (63), Expect = 6.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 21 LQDVCLSIKPKERICLVGCNGSGKSTLL 48
L+++ + I C+ G +GSGKSTL+
Sbjct: 617 LKNIDVEIPLGVFTCVTGVSGSGKSTLI 644
>gnl|CDD|145808 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain.
Transcription of the anti-viral guanylate-binding
protein (GBP) is induced by interferon-gamma during
macrophage induction. This family contains GBP1 and
GPB2, both GTPases capable of binding GTP, GDP and GMP.
Length = 297
Score = 33.4 bits (77), Expect = 0.17
Identities = 20/92 (21%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 515 QSLQEETVKKEKKQKRKNRLSYSQKLLLERLPQEIHKIQLKITEKEQQINDQNLISNEGK 574
Q+L + E ++ + Q+LL E+ +E ++ + E+ Q + + LI
Sbjct: 197 QALTAKEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQ--ERSYQEHVKQLIEKMEA 254
Query: 575 EIHQLYHDLDQMYQDVKEKEEQWLTLEIMQEE 606
E +L + ++M + K +E++ L E + E
Sbjct: 255 EREKLLAEQERM-LEHKLQEQEELLKEGFKTE 285
>gnl|CDD|143799 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family,
nucleotide-binding domain. This family includes the ATP
synthase alpha and beta subunits, the ATP synthase
associated with flagella and the termination factor Rho.
Length = 213
Score = 33.6 bits (78), Expect = 0.17
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
Query: 313 IGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKREDI 359
IGI G +G GKT LL ++ K D + I ++ ++
Sbjct: 18 IGIFGGSGTGKTVLLGMIARNAKADVVEV-------YVLIGERGREV 57
>gnl|CDD|31949 COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis
protein [Coenzyme metabolism].
Length = 161
Score = 33.4 bits (76), Expect = 0.18
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 313 IGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKREDIDPDKS-LASYLTG 371
+GIVG +GKTTL++ L K+K ++AT+ D D DK +Y
Sbjct: 5 LGIVGYKNSGKTTLIEKLVRKLK--------ARGYRVATVKHAHHDFDLDKPGKDTYRHR 56
Query: 372 SSGDSLMV 379
+G +V
Sbjct: 57 KAGADQVV 64
>gnl|CDD|36214 KOG0996, KOG0996, KOG0996, Structural maintenance of chromosome
protein 4 (chromosome condensation complex Condensin,
subunit C) [Chromatin structure and dynamics, Cell cycle
control, cell division, chromosome partitioning].
Length = 1293
Score = 33.4 bits (76), Expect = 0.19
Identities = 18/93 (19%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 517 LQEETVKKEKKQKRKNRLSYSQKLLLERLPQEIHKIQLKITEKEQQINDQNL-ISNEGKE 575
LQE+ KK + ++ +N++ ++ ++ KI ++ + E I + I +
Sbjct: 877 LQEKAAKKARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRN 936
Query: 576 IHQLYHDLDQMYQDVKEKEEQWLTLEIMQEEEK 608
I + L ++ +++++ E++ L+ + EE K
Sbjct: 937 IAKAQKKLSELEREIEDTEKE---LDDLTEELK 966
>gnl|CDD|146543 pfam03962, Mnd1, Mnd1 family. This family of proteins includes
MND1 from S. cerevisiae. The mnd1 protein forms a
complex with hop2 to promote homologous chromosome
pairing and meiotic double-strand break repair.
Length = 188
Score = 33.4 bits (77), Expect = 0.21
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 523 KKEKKQKRKNRLSYSQKLLLERLPQEIHKIQLKITEKEQQINDQNLISNEGKEIHQLYHD 582
+ K K K RL E+L +E+ +++ +I E + QI + E +E +L +
Sbjct: 60 PSQAKNKLKTRL--------EKLKKELEELKQRIAELQAQIEKLKVGREETEERTELLEE 111
Query: 583 LDQMYQDVKEKEEQWLTLE 601
L Q+ +++K+ + + E
Sbjct: 112 LKQLEKELKKLKAELEKYE 130
>gnl|CDD|133359 cd04159, Arl10_like, Arl10-like subfamily. Arl9/Arl10 was
identified from a human cancer-derived EST dataset. No
functional information about the subfamily is available
at the current time, but crystal structures of human
Arl10b and Arl10c have been solved.
Length = 159
Score = 33.1 bits (76), Expect = 0.23
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 313 IGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATI 352
I +VG +GKTTL+ ++ G + T+G N++ T
Sbjct: 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTK 41
>gnl|CDD|31297 COG1100, COG1100, GTPase SAR1 and related small G proteins [General
function prediction only].
Length = 219
Score = 33.0 bits (74), Expect = 0.23
Identities = 18/49 (36%), Positives = 24/49 (48%)
Query: 312 CIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKREDID 360
I ++G G GKTTLL L G P+ T+G TI+ R +I
Sbjct: 7 KIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIK 55
>gnl|CDD|31805 COG1618, COG1618, Predicted nucleotide kinase [Nucleotide transport
and metabolism].
Length = 179
Score = 32.9 bits (75), Expect = 0.25
Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 11/58 (18%)
Query: 313 IGIVGPNGAGKTTLLKLLTGKIKPD----CGFITLG-------TNLKIATIDQKREDI 359
I I G G GKTTL+ + K++ GFIT KI + E I
Sbjct: 8 IFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGI 65
>gnl|CDD|32443 COG2262, HflX, GTPases [General function prediction only].
Length = 411
Score = 33.0 bits (75), Expect = 0.25
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 313 IGIVGPNGAGKTTLLKLLTGKIKP--DCGFITLGTNLKIATIDQKR 356
+ +VG AGK+TL LTG D F TL + + R
Sbjct: 195 VALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGR 240
>gnl|CDD|31352 COG1158, Rho, Transcription termination factor [Transcription].
Length = 422
Score = 32.9 bits (75), Expect = 0.26
Identities = 42/178 (23%), Positives = 72/178 (40%), Gaps = 26/178 (14%)
Query: 193 GCLHHLDQGFAYFESWKKNILQQE--------QIRYHNLKKKNEAEKEWLRYGVTARRKR 244
G L L GF + S + L QIR NL+ + E + +R R
Sbjct: 56 GVLEILPDGFGFLRSADSSYLPGPDDIYVSPSQIRRFNLRTGDTVEGK-VRPPKEGERYF 114
Query: 245 NVRRVKELHEIQKQLQEQKKSFHSTIQTHLQTTQSSGKLVLEADKITKQYDDRLVVKDFS 304
+ +V+ ++ + + + F + + + +L LE + + R++ D
Sbjct: 115 ALLKVEAVNGDDPEKAKNRVLFENLTPLY-----PNERLKLERENGSTDLSTRVI--DLI 167
Query: 305 LRIHYGECIGIVGPNGAGKTTLLKLLTGKI---KPDCGFITLGTNLKIATIDQKREDI 359
I G+ IV P AGKTTLL+ + I P+C I L ID++ E++
Sbjct: 168 SPIGKGQRGLIVAPPKAGKTTLLQNIANAITTNHPECELIVL-------LIDERPEEV 218
>gnl|CDD|133305 cd04105, SR_beta, Signal recognition particle receptor, beta
subunit (SR-beta). SR-beta and SR-alpha form the
heterodimeric signal recognition particle (SRP or SR)
receptor that binds SRP to regulate protein
translocation across the ER membrane. Nascent
polypeptide chains are synthesized with an N-terminal
hydrophobic signal sequence that binds SRP54, a
component of the SRP. SRP directs targeting of the
ribosome-nascent chain complex (RNC) to the ER membrane
via interaction with the SR, which is localized to the
ER membrane. The RNC is then transferred to the
protein-conducting channel, or translocon, which
facilitates polypeptide translation across the ER
membrane or integration into the ER membrane. SR-beta
is found only in eukaryotes; it is believed to control
the release of the signal sequence from SRP54 upon
binding of the ribosome to the translocon. High
expression of SR-beta has been observed in human colon
cancer, suggesting it may play a role in the development
of this type of cancer.
Length = 203
Score = 32.7 bits (75), Expect = 0.27
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 315 IVGPNGAGKTTLLKLLTGKIKPD 337
++GP+ +GKT L LT
Sbjct: 5 LLGPSDSGKTALFTKLTTGKYRS 27
>gnl|CDD|73033 cd03274, ABC_SMC4_euk, Eukaryotic SMC4 proteins; SMC proteins are
large (approximately 110 to 170 kDa), and each is
arranged into five recognizable domains. Amino-acid
sequence homology of SMC proteins between species is
largely confined to the amino- and carboxy-terminal
globular domains. The amino-terminal domain contains a
'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B' motif,
and a motif with homology to the signature sequence of
the ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these
sequences. In eukaryotic cells, the proteins are found
as heterodimers of SMC1 paired with SMC3, SMC2 with
SMC4, and SMC5 with SMC6 (formerly known as Rad18)..
Length = 212
Score = 32.9 bits (75), Expect = 0.29
Identities = 36/152 (23%), Positives = 60/152 (39%), Gaps = 44/152 (28%)
Query: 315 IVGPNGAGKTTLL------------KLLTGKI---------KPDCGFITLGTNLKIATID 353
IVGPNG+GK+ ++ K+ K+ P+ ++ + +
Sbjct: 30 IVGPNGSGKSNVIDSMLFVFGFRASKMRQKKLSDLIHNSAGHPNLDSCSVEVHFQEIIDK 89
Query: 354 Q--KREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFLFHPDQAHSLMKHLSGGE 411
K + ID D L+++GE +A P ++ + +LSGGE
Sbjct: 90 PLLKSKGIDLD----------HNRFLILQGEVEQIA-------QMPKKSWKNISNLSGGE 132
Query: 412 KMRAIVARVLA----QPFNFLIMDEPTNDLDF 439
K + +A V A +P +MDE LDF
Sbjct: 133 KTLSSLALVFALHHYKPTPLYVMDEIDAALDF 164
>gnl|CDD|36000 KOG0781, KOG0781, KOG0781, Signal recognition particle receptor,
alpha subunit [Intracellular trafficking, secretion, and
vesicular transport].
Length = 587
Score = 32.7 bits (74), Expect = 0.29
Identities = 19/38 (50%), Positives = 26/38 (68%), Gaps = 5/38 (13%)
Query: 18 IDLLQDVCLSIKPKER---ICLVGCNGSGKST-LLKIA 51
+DLL+D+ +S + ++R I VG NG GKST L KIA
Sbjct: 363 VDLLRDI-MSARRRKRPYVISFVGVNGVGKSTNLAKIA 399
>gnl|CDD|31609 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and
secretion].
Length = 407
Score = 32.6 bits (74), Expect = 0.31
Identities = 27/154 (17%), Positives = 54/154 (35%), Gaps = 12/154 (7%)
Query: 210 KNILQQEQIRYHNLKKKNEAEKEWLRYGVTARRKRNVRRVKELHEIQKQLQEQKKSFHST 269
L + + + + AE + L++ + Q + +
Sbjct: 101 TPSLIERKTQEVKDSGEEIAEMMRDEKVPIRELEEIPPEFVALYKQEIQSPTRLNLINEL 160
Query: 270 IQTHLQTTQSSGKLVLEADKITKQYDDRLVVKDFSL----RIHYGECIGIVGPNGAGKTT 325
++ L+ + E+ + + + ++L SL + I +VGP G GKTT
Sbjct: 161 LRAGLE--LEILDMKDESYEDLRYFSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTT 218
Query: 326 LL-----KLLTGKIKPDCGFITLGTNLKIATIDQ 354
L + + K K IT T +I ++Q
Sbjct: 219 TLAKLAARYVMLKKKKKVAIITTDT-YRIGAVEQ 251
>gnl|CDD|112137 pfam03308, ArgK, ArgK protein. The ArgK protein acts as an ATPase
enzyme and as a kinase, and phosphorylates periplasmic
binding proteins involved in the LAO (lysine, arginine,
ornithine)/AO transport systems.
Length = 267
Score = 32.3 bits (74), Expect = 0.35
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 19/81 (23%)
Query: 313 IGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKREDIDPDKSLASYLTGS 372
+GI G GAGK+TL++ L G ++A + +DP +S TG
Sbjct: 32 VGITGVPGAGKSTLIEALG------MELRRRG--HRVAVL-----AVDP----SSPFTGG 74
Query: 373 S--GDSLMVRGESRHVAGYIK 391
S GD ++ + +I+
Sbjct: 75 SILGDRTRMQRLAVDPGAFIR 95
>gnl|CDD|31889 COG1703, ArgK, Putative periplasmic protein kinase ArgK and related
GTPases of G3E family [Amino acid transport and
metabolism].
Length = 323
Score = 32.6 bits (74), Expect = 0.37
Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 19/109 (17%)
Query: 285 LEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLG 344
+E+ + + R +++ R IGI G GAGK+TL++ L G
Sbjct: 26 VESRRPDHRALARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALG------RELRERG 79
Query: 345 TNLKIATIDQKREDIDPDKSLASYLTGSS--GDSLMVRGESRHVAGYIK 391
++A + +DP +S TG S GD + ++ + +I+
Sbjct: 80 --HRVAVL-----AVDP----SSPFTGGSILGDRIRMQRLAVDPGVFIR 117
>gnl|CDD|33254 COG3451, VirB4, Type IV secretory pathway, VirB4 components
[Intracellular trafficking and secretion].
Length = 796
Score = 32.2 bits (73), Expect = 0.38
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 303 FSLRIHYGECIG---IVGPNGAGKTTLLKLL 330
F H GE +G I+GP GAGKT LL L
Sbjct: 426 FYFNFHVGEDVGHTLIIGPTGAGKTVLLSFL 456
>gnl|CDD|147726 pfam05729, NACHT, NACHT domain. This NTPase domain is found in
apoptosis proteins as well as those involved in MHC
transcription activation. This family is closely
related to pfam00931.
Length = 165
Score = 32.3 bits (74), Expect = 0.42
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 33 RICLVGCNGSGKSTLL-KIAAGITEPQSGN----VFLHSSSRL 70
+ L G GSGK+TLL K+A + + VF L
Sbjct: 2 TVILQGEAGSGKTTLLQKLALLWAQGKLPQDFDFVFFLPCREL 44
>gnl|CDD|30828 COG0480, FusA, Translation elongation factors (GTPases)
[Translation, ribosomal structure and biogenesis].
Length = 697
Score = 32.1 bits (73), Expect = 0.48
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 312 CIGIVGPNGAGKTTLLKLL---TGKIKP 336
IGIV AGKTTL + + TG I
Sbjct: 12 NIGIVAHIDAGKTTLTERILFYTGIISK 39
>gnl|CDD|73034 cd03275, ABC_SMC1_euk, Eukaryotic SMC1 proteins; SMC proteins are
large (approximately 110 to 170 kDa), and each is
arranged into five recognizable domains. Amino-acid
sequence homology of SMC proteins between species is
largely confined to the amino- and carboxy-terminal
globular domains. The amino-terminal domain contains a
'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B' motif,
and a motif with homology to the signature sequence of
the ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these
sequences. In eukaryotic cells, the proteins are found
as heterodimers of SMC1 paired with SMC3, SMC2 with
SMC4, and SMC5 with SMC6 (formerly known as Rad18)..
Length = 247
Score = 32.1 bits (73), Expect = 0.50
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 404 MKHLSGGEKMRAIVARVLA----QPFNFLIMDEPTNDLD 438
M +LSGGEK A +A + A QP F ++DE LD
Sbjct: 153 MDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALD 191
>gnl|CDD|31564 COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General
function prediction only].
Length = 398
Score = 31.5 bits (71), Expect = 0.64
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 313 IGIVGPNGAGKTTLLKLLTGKIKPDCGFI 341
I I+GP GKTTLLKLL + + +I
Sbjct: 40 ILILGPRQVGKTTLLKLLIKGLLEEIIYI 68
>gnl|CDD|37002 KOG1791, KOG1791, KOG1791, Uncharacterized conserved protein
[Function unknown].
Length = 1758
Score = 31.5 bits (71), Expect = 0.65
Identities = 27/192 (14%), Positives = 53/192 (27%), Gaps = 17/192 (8%)
Query: 58 QSGNVFLHSSSRLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSP-YSLLKKFNLREQD 116
S +S + N L T + ++ IE Y ++ N+ + +
Sbjct: 507 ISIIFNNYSKMFPNWFSINLPLEKIKT--DIMQKSLIHGIEFILLDLYLQFQQKNVTQTN 564
Query: 117 RIENLSVGQTRCVALMK--------MLISRPDILILDEPTNHLDFRTIHWMEQELLKINS 168
S G + L+K I +LDE T I + +N
Sbjct: 565 WWNPSSGGNSLFTLLLKLASSKLDSNDILTRLSELLDELTRTNVIFLILLFSPVMALVNP 624
Query: 169 ALI------FVSHDRRFLETLSTTTVWLDRGCLHHLDQGFAYFESWKKNILQQEQIRYHN 222
+ + + L T + + L ++D Y + +Y +
Sbjct: 625 LQLLSLQVTGIDAMESVWKWLDETISSVSKDPLAYVDMAKEYNYICPFIMCLSALWKYGD 684
Query: 223 LKKKNEAEKEWL 234
E +
Sbjct: 685 KSSNPEFLIKLE 696
>gnl|CDD|73029 cd03270, ABC_UvrA_I, The excision repair protein UvrA domain I;
Nucleotide excision repair in eubacteria is a process
that repairs DNA damage by the removal of a 12-13-mer
oligonucleotide containing the lesion. Recognition and
cleavage of the damaged DNA is a multistep ATP-dependent
reaction that requires the UvrA, UvrB, and UvrC
proteins. Both UvrA and UvrB are ATPases, with UvrA
having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases..
Length = 226
Score = 31.3 bits (71), Expect = 0.72
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 407 LSGGEKMRAIVARVLAQPFNFL--IMDEPTNDLDFETLDFLERTITQLQ---GTILIVSH 461
LSGGE R +A + + ++DEP+ L D L T+ +L+ T+L+V H
Sbjct: 138 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH 197
Query: 462 DRD 464
D D
Sbjct: 198 DED 200
>gnl|CDD|29677 cd01915, CODH, Carbon monoxide dehydrogenase (CODH) is found in
acetogenic and methanogenic organisms and is responsible
for the synthesis and breakdown of acetyl-CoA,
respectively. CODH has two types of metal clusters, a
cubane [Fe4-S4] center (B-cluster) similar to that of
hybrid cluster protein (HCP) and a Ni-Fe-S center
(C-cluster) where carbon monoxide oxidation occurs.
Bifunctional CODH forms a heterotetramer with acetyl-CoA
synthase (ACS) consisting of two CODH and two ACS
subunits while monofunctional CODH forms a homodimer.
Bifunctional CODH reduces carbon dioxide to carbon
monoxide and ACS then synthesizes acetyl-CoA from carbon
monoxide, CoA, and a methyl group donated by another
protein (CoFeSP), while monofunctional CODH oxidizes
carbon monoxide to carbon dioxide. CODH and ACS each
have a metal cluster referred to as the C- and
A-clusters, respectively..
Length = 613
Score = 31.3 bits (71), Expect = 0.75
Identities = 26/121 (21%), Positives = 46/121 (38%), Gaps = 16/121 (13%)
Query: 335 KPDCGFITLGTNLKIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGESRHVAGYIKDFL 394
+P CGF LG ++ + R IDP + G++ D+++ R R VA
Sbjct: 27 QPQCGFGELGLCCRLCSNGPCR--IDPKGPGKRGVCGATADTIVARNLLRMVAAGAAAHS 84
Query: 395 FHPDQAHSLMKHLSGG---------EKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFL 445
H A +K + G EK++A+ A+ + N++ E +
Sbjct: 85 HHARHAARTLKAAAEGKTDYEIKDEEKLKAL-----AKRLGIDTEGKSINEIAVEVAEIA 139
Query: 446 E 446
Sbjct: 140 L 140
>gnl|CDD|73180 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine
triphosphate (ATP) to guanosine monophosphate (GMP) to
yield adenosine diphosphate (ADP) and guanosine
diphosphate (GDP). It plays an essential role in the
biosynthesis of guanosine triphosphate (GTP). This
enzyme is also important for the activation of some
antiviral and anticancer agents, such as acyclovir,
ganciclovir, carbovir, and thiopurines..
Length = 137
Score = 31.3 bits (71), Expect = 0.76
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 315 IVGPNGAGKTTLLKLLTGKIKPDCGF 340
+ GP+G GK+TLLK L + P+ GF
Sbjct: 4 LSGPSGVGKSTLLKRLLEEFDPNFGF 29
>gnl|CDD|36180 KOG0962, KOG0962, KOG0962, DNA repair protein RAD50, ABC-type
ATPase/SMC superfamily [Replication, recombination and
repair].
Length = 1294
Score = 31.0 bits (70), Expect = 0.84
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 129 VALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKI--------NSALIFVSHDRRFL 180
+AL + S +L LDEPT +LD I + + L +I N LI ++HD F+
Sbjct: 1198 LALAETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLIVITHDEDFV 1257
Query: 181 ETLS 184
+ L
Sbjct: 1258 QLLG 1261
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase
fold. The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons,
ATPase subunits of proteases, helicases, or
nucleic-acid stimulated ATPases. The AAA+ proteins
contain several distinct features in addition to the
conserved alpha-beta-alpha core domain structure and
the Walker A and B motifs of the P-loop NTPases..
Length = 151
Score = 31.0 bits (70), Expect = 0.98
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 26 LSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRL 70
L + P + + L G G+GK+TL + A ++S L
Sbjct: 14 LELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDL 58
Score = 27.9 bits (62), Expect = 8.1
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 305 LRIHYGECIGIVGPNGAGKTTLLKLL 330
L + + + + GP G GKTTL + +
Sbjct: 14 LELPPPKNLLLYGPPGTGKTTLARAI 39
>gnl|CDD|35296 KOG0073, KOG0073, KOG0073, GTP-binding ADP-ribosylation factor-like
protein ARL2 [Intracellular trafficking, secretion, and
vesicular transport, Cytoskeleton].
Length = 185
Score = 31.0 bits (70), Expect = 1.1
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 313 IGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKR---EDIDPDKSLASY 368
I I+G + +GKTT++K L G+ D TLG +K D+ K+L SY
Sbjct: 19 ILILGLDNSGKTTIVKKLLGE-DTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSY 76
>gnl|CDD|133258 cd00882, Ras_like_GTPase, Ras-like GTPase superfamily. The Ras-like
superfamily of small GTPases consists of several
families with an extremely high degree of structural and
functional similarity. The Ras superfamily is divided
into at least four families in eukaryotes: the Ras, Rho,
Rab, and Sar1/Arf families. This superfamily also
includes proteins like the GTP translation factors,
Era-like GTPases, and G-alpha chain of the
heterotrimeric G proteins. Members of the Ras
superfamily regulate a wide variety of cellular
functions: the Ras family regulates gene expression, the
Rho family regulates cytoskeletal reorganization and
gene expression, the Rab and Sar1/Arf families regulate
vesicle trafficking, and the Ran family regulates
nucleocytoplasmic transport and microtubule
organization. The GTP translation factor family regulate
initiation, elongation, termination, and release in
translation, and the Era-like GTPase family regulates
cell division, sporulation, and DNA replication. Members
of the Ras superfamily are identified by the GTP binding
site, which is made up of five characteristic sequence
motifs, and the switch I and switch II regions.
Length = 157
Score = 30.9 bits (70), Expect = 1.2
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 315 IVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKREDID 360
+VG +G GKT+LL L G + T + TI+ + +
Sbjct: 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVK 46
>gnl|CDD|35383 KOG0161, KOG0161, KOG0161, Myosin class II heavy chain
[Cytoskeleton].
Length = 1930
Score = 30.6 bits (69), Expect = 1.2
Identities = 22/107 (20%), Positives = 48/107 (44%), Gaps = 9/107 (8%)
Query: 508 QKKNPPAQSLQEET----VKKEKKQKRKNRLSYSQKLLLERLPQEIHKIQLKITEKEQQI 563
+K Q L+E+ K +K KNRL + LE L ++ + + + E++
Sbjct: 1382 KKLQQRLQELEEQIEAANAKNASLEKAKNRL----QQELEDLQLDLERSRAAVAALEKKQ 1437
Query: 564 -NDQNLISNEGKEIHQLYHDLDQMYQDVKEKEEQWLTLEIMQEEEKN 609
+ L++ K++ +L +LD +++++ + L+ EE
Sbjct: 1438 KRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLE 1484
Score = 28.3 bits (63), Expect = 6.3
Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 11/93 (11%)
Query: 519 EETVKKEKKQKRKNRLSYSQKLLLERLPQEIHKIQLKITEKEQQINDQNLISNEGKEIHQ 578
E +K++K +++ + Q LE L + K++L+ E ++ + +EI+
Sbjct: 925 AELERKKRKLEQEVQELKEQ---LEELELTLQKLELEKNAAENKLKNLE------EEINS 975
Query: 579 LYHDLDQMYQDVKEKEE--QWLTLEIMQEEEKN 609
L ++ ++ ++ KE EE + L ++ EEEK
Sbjct: 976 LDENISKLSKEKKELEERIRELQDDLQAEEEKA 1008
>gnl|CDD|30190 cd01672, TMPK, Thymidine monophosphate kinase (TMPK), also known as
thymidylate kinase, catalyzes the phosphorylation of
thymidine monophosphate (TMP) to thymidine diphosphate
(TDP) utilizing ATP as its preferred phophoryl donor.
TMPK represents the rate-limiting step in either de novo
or salvage biosynthesis of thymidine triphosphate
(TTP)..
Length = 200
Score = 30.2 bits (68), Expect = 1.5
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 313 IGIVGPNGAGKTTLLKLLTGKIKP 336
I G +GAGKTTL++LL +++
Sbjct: 3 IVFEGIDGAGKTTLIELLAERLEA 26
>gnl|CDD|99797 cd06200, SiR_like1, Cytochrome p450- like alpha subunits of E. coli
sulfite reductase (SiR) multimerize with beta subunits
to catalyze the NADPH dependent reduction of sulfite to
sulfide. Beta subunits have an Fe4S4 cluster and a
siroheme, while the alpha subunits (cysJ gene) are of
the cytochrome p450 (CyPor) family having FAD and FMN as
prosthetic groups and utilizing NADPH. Cypor (including
cyt -450 reductase, nitric oxide synthase, and
methionine synthase reductase) are ferredoxin reductase
(FNR)-like proteins with an additional N-terminal FMN
domain and a connecting sub-domain inserted within the
flavin binding portion of the FNR-like domain. The
connecting domain orients the N-terminal FMN domain with
the C-terminal FNR domain. NADPH cytochrome p450
reductase (CYPOR) serves as an electron donor in several
oxygenase systems and is a component of nitric oxide
synthases and methionine synthase reductases. CYPOR
transfers two electrons from NADPH to the heme of
cytochrome p450 via FAD and FMN. Ferredoxin-NADP+
(oxido)reductase is an FAD-containing enzyme that
catalyzes the reversible electron transfer between
NADP(H) and electron carrier proteins such as ferredoxin
and flavodoxin. Isoforms of these flavoproteins (i.e.
having a non-covalently bound FAD as a prosthetic group)
are present in chloroplasts, mitochondria, and bacteria
in which they participate in a wide variety of redox
metabolic pathways. The C-terminal domain contains most
of the NADP(H) binding residues, and the N-terminal
domain interacts non-covalently with the isoalloxazine
rings of the flavin molecule, which lies largely in a
large gap betweed the two domains. Ferredoxin-NADP+
reductase first accepts one electron from reduced
ferredoxin to form a flavin semiquinone intermediate.
The enzyme then accepts a second electron to form FADH2
which then transfers two electrons and a proton to NADP+
to form NADPH..
Length = 245
Score = 30.3 bits (69), Expect = 1.5
Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 14/65 (21%)
Query: 175 HDRRFLETLSTTTVWLDRGCLHHLDQGFAYFESWKKNILQQEQIRY--HNLKKKNEAEKE 232
HD E L W G L LD F+ Q Q RY L+ + +
Sbjct: 150 HDFFCREELEA---WQAAGHLARLDLAFSR---------DQAQKRYVQDRLRAAADELRA 197
Query: 233 WLRYG 237
W+ G
Sbjct: 198 WVAEG 202
>gnl|CDD|111395 pfam02492, cobW, CobW/HypB/UreG, nucleotide-binding domain. This
domain is found in HypB, a hydrogenase expression /
formation protein, and UreG a urease accessory protein.
Both these proteins contain a P-loop nucleotide binding
motif. HypB has GTPase activity and is a guanine
nucleotide binding protein. It is not known whether UreG
binds GTP or some other nucleotide. Both enzymes are
involved in nickel binding. HypB can store nickel and is
required for nickel dependent hydrogenase expression.
UreG is required for functional incorporation of the
urease nickel metallocenter. GTP hydrolysis may required
by these proteins for nickel incorporation into other
nickel proteins. This family of domains also contains
P47K, a Pseudomonas chlororaphis protein needed for
nitrile hydratase expression, and the cobW gene product,
which may be involved in cobalamin biosynthesis in
Pseudomonas denitrificans.
Length = 174
Score = 30.3 bits (69), Expect = 1.6
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 312 CIGIVGPNGAGKTTLL 327
+ G G+GKTTLL
Sbjct: 2 VTVLTGFLGSGKTTLL 17
>gnl|CDD|133255 cd00879, Sar1, Sar1 subfamily. Sar1 is an essential component of
COPII vesicle coats involved in export of cargo from the
ER. The GTPase activity of Sar1 functions as a
molecular switch to control protein-protein and
protein-lipid interactions that direct vesicle budding
from the ER. Activation of the GDP to the GTP-bound
form of Sar1 involves the membrane-associated guanine
nucleotide exchange factor (GEF) Sec12. Sar1 is unlike
all Ras superfamily GTPases that use either myristoyl or
prenyl groups to direct membrane association and
function, in that Sar1 lacks such modification.
Instead, Sar1 contains a unique nine-amino-acid
N-terminal extension. This extension contains an
evolutionarily conserved cluster of bulky hydrophobic
amino acids, referred to as the Sar1-N-terminal
activation recruitment (STAR) motif. The STAR motif
mediates the recruitment of Sar1 to ER membranes and
facilitates its interaction with mammalian Sec12 GEF
leading to activation.
Length = 190
Score = 30.3 bits (69), Expect = 1.7
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 9/49 (18%)
Query: 313 IGIVGPNGAGKTTLL-KLLTGKI-------KPDCGFITLGTNLKIATID 353
I +G + AGKTTLL L ++ P +T+G N+K T D
Sbjct: 22 ILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIG-NIKFKTFD 69
>gnl|CDD|39383 KOG4181, KOG4181, KOG4181, Uncharacterized conserved protein
[Function unknown].
Length = 491
Score = 30.1 bits (67), Expect = 1.8
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 313 IGIVGPNGAGKTTLLKLLTG 332
IG++G G+GK+TLL LL
Sbjct: 191 IGVLGGQGSGKSTLLSLLAA 210
>gnl|CDD|35689 KOG0468, KOG0468, KOG0468, U5 snRNP-specific protein [Translation,
ribosomal structure and biogenesis].
Length = 971
Score = 30.0 bits (67), Expect = 2.0
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 301 KDFSLRIHYGEC----IGIVGPNGAGKTTLLKLLTGKIKPD 337
++ + +G+VG GKT L+ LL + PD
Sbjct: 115 LEYLAGLMDNPERIRNVGLVGHLHHGKTALMDLLVEQTHPD 155
>gnl|CDD|33731 COG3950, COG3950, Predicted ATP-binding protein involved in
virulence [General function prediction only].
Length = 440
Score = 30.0 bits (67), Expect = 2.0
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Query: 296 DRLVVKDFSLRIHY------GECIGIVGPNGAGKTTLLKLLTGKIKP--DCGFITLGTNL 347
++ + +F ++ E IVGPNG+GKTT+L + + D +L
Sbjct: 4 RKISLNNFRCFLNLDITFGESETTIIVGPNGSGKTTVLDAIRNALNKFIDFFIYLRFKSL 63
Query: 348 KIATIDQKR 356
KI D +
Sbjct: 64 KIELDDIEL 72
Score = 28.8 bits (64), Expect = 4.8
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 30 PKERICLVGCNGSGKSTLLKIAAGITEP 57
E +VG NGSGK+T+L
Sbjct: 23 ESETTIIVGPNGSGKTTVLDAIRNALNK 50
>gnl|CDD|39857 KOG4658, KOG4658, KOG4658, Apoptotic ATPase [Signal transduction
mechanisms].
Length = 889
Score = 29.9 bits (67), Expect = 2.0
Identities = 34/187 (18%), Positives = 68/187 (36%), Gaps = 29/187 (15%)
Query: 156 IHWMEQELLKINSALIFVSHDRRFLETLSTTTVWLDRGCLHHLDQGFAYFESWKKNILQQ 215
I +++ L + SAL + R LE + D + + +++
Sbjct: 30 ILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFL-------VEE 82
Query: 216 EQIRYHNLKKKNEAEKEWLR------------YGVTARRKRNVRRVKELHEIQKQLQEQK 263
+ + ++L E++ L Y R + +R V+ L + +
Sbjct: 83 IERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESL-GSKGVFEVVG 141
Query: 264 KSFHSTIQTHLQTTQSSGKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGK 323
+S + + QS + LE ++ +RL+ D + +GI G G GK
Sbjct: 142 ESLDPREKVETRPIQSESDVGLETML--EKLWNRLMEDDVGI-------VGIYGMGGVGK 192
Query: 324 TTLLKLL 330
TTL + +
Sbjct: 193 TTLARQI 199
>gnl|CDD|30917 COG0572, Udk, Uridine kinase [Nucleotide transport and metabolism].
Length = 218
Score = 29.8 bits (67), Expect = 2.3
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 313 IGIVGPNGAGKTTLLKLLTGKIKP 336
IGI G +G+GKTT+ K L+ ++
Sbjct: 11 IGIAGGSGSGKTTVAKELSEQLGV 34
>gnl|CDD|36022 KOG0804, KOG0804, KOG0804, Cytoplasmic Zn-finger protein BRAP2
(BRCA1 associated protein) [General function prediction
only].
Length = 493
Score = 29.6 bits (66), Expect = 2.4
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 11/96 (11%)
Query: 494 SDMLVQQKKSHPTPQKKNPPAQSLQEET--VKKEKKQKRKNRLSYSQKL--LLERLPQEI 549
SD+ ++K Q+ + Q+E ++E K+ KN+ + KL L ER + +
Sbjct: 371 SDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEAL 430
Query: 550 HKIQLKITEKEQQIND-------QNLISNEGKEIHQ 578
KIT+ ++Q+ D Q + ++ EI +
Sbjct: 431 GSKDEKITDLQEQLRDLMFFLEAQQKLKSDTDEIQE 466
>gnl|CDD|146036 pfam03205, MobB, Molybdopterin guanine dinucleotide synthesis
protein B. This protein contains a P-loop.
Length = 122
Score = 29.6 bits (67), Expect = 2.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 313 IGIVGPNGAGKTTLLKLLTGKIK 335
+ +VGP +GKTTL++ L +K
Sbjct: 3 VLVVGPKDSGKTTLIRKLLNYLK 25
>gnl|CDD|30201 cd02028, UMPK_like, Uridine monophosphate kinase_like (UMPK_like)
is a family of proteins highly similar to the uridine
monophosphate kinase (UMPK, EC 2.7.1.48), also known as
uridine kinase or uridine-cytidine kinase (UCK)..
Length = 179
Score = 29.5 bits (66), Expect = 2.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 312 CIGIVGPNGAGKTTLLKLL 330
+GI GP+G+GKTT K L
Sbjct: 1 VVGIAGPSGSGKTTFAKKL 19
>gnl|CDD|34569 COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF
[Intracellular trafficking and secretion].
Length = 355
Score = 29.5 bits (66), Expect = 2.8
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 313 IGIVGPNGAGKTTLLKLLTGKIKPDCGFITL 343
I I G G+GKTTLL L+G I D IT+
Sbjct: 176 ILISGGTGSGKTTLLNALSGFIDSDERVITI 206
>gnl|CDD|37960 KOG2749, KOG2749, KOG2749, mRNA cleavage and polyadenylation factor
IA/II complex, subunit CLP1 [RNA processing and
modification].
Length = 415
Score = 29.5 bits (66), Expect = 2.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 309 YGECIGIVGPNGAGKTTLLKLL 330
YG + +VGP GK+TL ++L
Sbjct: 102 YGPRVMVVGPTDVGKSTLCRIL 123
>gnl|CDD|30727 COG0378, HypB, Ni2+-binding GTPase involved in regulation of
expression and maturation of urease and hydrogenase
[Posttranslational modification, protein turnover,
chaperones / Transcription].
Length = 202
Score = 29.4 bits (66), Expect = 2.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 312 CIGIVGPNGAGKTTLLKLLTGKIK 335
IG+ GP G+GKT L++ +K
Sbjct: 15 RIGVGGPPGSGKTALIEKTLRALK 38
>gnl|CDD|30843 COG0497, RecN, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 557
Score = 29.4 bits (66), Expect = 3.0
Identities = 12/75 (16%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 515 QSLQEETVKKEKKQKRKNRLSYSQKLLLERLPQEIHKIQLKITEKEQQINDQNLISNEGK 574
+ L++ K+ ++ +R + L + +E+ ++ L+ E E+ ++ +SN K
Sbjct: 171 RELEDLQEKERERAQRADLLQFQL--------EELEELNLQPGEDEELEEERKRLSNSEK 222
Query: 575 EIHQLYHDLDQMYQD 589
+ + L+ + +
Sbjct: 223 LAEAIQNALELLSGE 237
>gnl|CDD|133254 cd00878, Arf_Arl, Arf (ADP-ribosylation factor)/Arl (Arf-like)
small GTPases. Arf proteins are activators of
phospholipase D isoforms. Unlike Ras proteins they lack
cysteine residues at their C-termini and therefore are
unlikely to be prenylated. Arfs are N-terminally
myristoylated. Members of the Arf family are regulators
of vesicle formation in intracellular traffic that
interact reversibly with membranes of the secretory and
endocytic compartments in a GTP-dependent manner. They
depart from other small GTP-binding proteins by a unique
structural device, interswitch toggle, that implements
front-back communication from N-terminus to the
nucleotide binding site. Arf-like (Arl) proteins are
close relatives of the Arf, but only Arl1 has been shown
to function in membrane traffic like the Arf proteins.
Arl2 has an unrelated function in the folding of native
tubulin, and Arl4 may function in the nucleus. Most
other Arf family proteins are so far relatively poorly
characterized. Thus, despite their significant sequence
homologies, Arf family proteins may regulate unrelated
functions.
Length = 158
Score = 29.5 bits (67), Expect = 3.0
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 11/48 (22%)
Query: 312 CIGIVGPNGAGKTTLL-KLLTGK---IKPDCGFITLGTNLKIATIDQK 355
I I+G +GAGKTT+L KL G+ P T+G N++ T++ K
Sbjct: 1 RILILGLDGAGKTTILYKLKLGEVVTTIP-----TIGFNVE--TVEYK 41
>gnl|CDD|133282 cd01882, BMS1, Bms1. Bms1 is an essential, evolutionarily
conserved, nucleolar protein. Its depletion interferes
with processing of the 35S pre-rRNA at sites A0, A1, and
A2, and the formation of 40S subunits. Bms1, the
putative endonuclease Rc11, and the essential U3 small
nucleolar RNA form a stable subcomplex that is believed
to control an early step in the formation of the 40S
subumit. The C-terminal domain of Bms1 contains a
GTPase-activating protein (GAP) that functions
intramolecularly. It is believed that Rc11 activates
Bms1 by acting as a guanine-nucleotide exchange factor
(GEF) to promote GDP/GTP exchange, and that activated
(GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Length = 225
Score = 29.6 bits (67), Expect = 3.0
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 313 IGIVGPNGAGKTTLLKLL 330
+ +VGP G GKTTL+K L
Sbjct: 42 VAVVGPPGVGKTTLIKSL 59
>gnl|CDD|30474 COG0125, Tmk, Thymidylate kinase [Nucleotide transport and
metabolism].
Length = 208
Score = 29.5 bits (66), Expect = 3.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 313 IGIVGPNGAGKTTLLKLLTGKIK 335
I I G +GAGKTT +LL +++
Sbjct: 6 IVIEGIDGAGKTTQAELLKERLE 28
>gnl|CDD|144151 pfam00448, SRP54, SRP54-type protein, GTPase domain. This family
includes relatives of the G-domain of the SRP54 family
of proteins.
Length = 196
Score = 29.4 bits (67), Expect = 3.1
Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Query: 313 IGIVGPNGAGKTTLL-KL 329
I +VG G+GKTT + KL
Sbjct: 4 ILLVGLQGSGKTTTIAKL 21
>gnl|CDD|35631 KOG0410, KOG0410, KOG0410, Predicted GTP binding protein [General
function prediction only].
Length = 410
Score = 29.2 bits (65), Expect = 3.2
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 313 IGIVGPNGAGKTTLLKLLTG-KIKP-DCGFITLGTNLKIATIDQKRE 357
I +VG AGK+TL+K LT + P D F TL L A +
Sbjct: 181 IAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNF 227
>gnl|CDD|30909 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide
transport and metabolism].
Length = 178
Score = 29.1 bits (65), Expect = 3.9
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 10/54 (18%)
Query: 313 IGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKREDIDPDKSLA 366
I I+GP GAGK+TL K L K+ + T D R I L
Sbjct: 3 ILILGPPGAGKSTLAKKLAKKLGL----------PHLDTGDILRAAIAERTELG 46
Score = 27.9 bits (62), Expect = 7.7
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 33 RICLVGCNGSGKSTLLK 49
RI ++G G+GKSTL K
Sbjct: 2 RILILGPPGAGKSTLAK 18
>gnl|CDD|39873 KOG4674, KOG4674, KOG4674, Uncharacterized conserved coiled-coil
protein [Function unknown].
Length = 1822
Score = 28.8 bits (64), Expect = 4.0
Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Query: 508 QKKNPPAQSLQEETVK-KEKKQKRKNRLSYSQKLLLERLPQEIHKIQLKITEKEQQINDQ 566
Q+K + L+EE + K++ Q + S K E+L EI +++ ++ EKE I +
Sbjct: 1274 QEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELEEKENLIAEL 1333
Query: 567 NLISNEGKE-IHQLYHDLDQMYQDVKEKEEQWLTLEIMQEE 606
N +E I + +L+ ++ ++ EQ L+
Sbjct: 1334 KKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAA 1374
>gnl|CDD|133279 cd01878, HflX, HflX subfamily. A distinct conserved domain with a
glycine-rich segment N-terminal of the GTPase domain
characterizes the HflX subfamily. The E. coli HflX has
been implicated in the control of the lambda cII
repressor proteolysis, but the actual biological
functions of these GTPases remain unclear. HflX is
widespread, but not universally represented in all three
superkingdoms.
Length = 204
Score = 28.9 bits (66), Expect = 4.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 313 IGIVGPNGAGKTTLLKLLTG 332
+ +VG AGK+TL LTG
Sbjct: 44 VALVGYTNAGKSTLFNALTG 63
>gnl|CDD|31532 COG1341, COG1341, Predicted GTPase or GTP-binding protein [General
function prediction only].
Length = 398
Score = 28.8 bits (64), Expect = 4.4
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 7/72 (9%)
Query: 307 IHYGEC-IGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKREDIDPDKSL 365
+ +VGP +GK+TL L K + G + I D + +I P +
Sbjct: 69 SAGKVGVVMVVGPVDSGKSTLTTYLANK------LLARGRKVAIIDADVGQSEIGPPGFI 122
Query: 366 ASYLTGSSGDSL 377
+ S SL
Sbjct: 123 SLAFPESPVISL 134
>gnl|CDD|133360 cd04160, Arfrp1, Arfrp1 subfamily. Arfrp1 (Arf-related protein 1),
formerly known as ARP, is a membrane-associated Arf
family member that lacks the N-terminal myristoylation
motif. Arfrp1 is mainly associated with the trans-Golgi
compartment and the trans-Golgi network, where it
regulates the targeting of Arl1 and the GRIP
domain-containing proteins, golgin-97 and golgin-245,
onto Golgi membranes. It is also involved in the
anterograde transport of the vesicular stomatitis virus
G protein from the Golgi to the plasma membrane, and in
the retrograde transport of TGN38 and Shiga toxin from
endosomes to the trans-Golgi network. Arfrp1 also
inhibits Arf/Sec7-dependent activation of phospholipase
D. Deletion of Arfrp1 in mice causes embryonic
lethality at the gastrulation stage and apoptosis of
mesodermal cells, indicating its importance in
development.
Length = 167
Score = 28.8 bits (65), Expect = 4.6
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 312 CIGIVGPNGAGKTTLLKLLTGKIKPDCGF----ITLGTNLKIATID 353
+ I+G + AGKTT L+ L G IT L I TI+
Sbjct: 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIE 46
>gnl|CDD|30882 COG0536, Obg, Predicted GTPase [General function prediction only].
Length = 369
Score = 28.6 bits (64), Expect = 4.7
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 301 KDFSLRIHYGECIGIVG-PNGAGKTTLLKLLTGKIKPDCG---FITLGTNLKIATIDQKR 356
+D L + +G+VG PN AGK+TLL ++ KP F TL NL + +D
Sbjct: 150 RDLRLELKLLADVGLVGLPN-AGKSTLLSAVSAA-KPKIADYPFTTLVPNLGVVRVDGGE 207
>gnl|CDD|147760 pfam05783, DLIC, Dynein light intermediate chain (DLIC). This
family consists of several eukaryotic dynein light
intermediate chain proteins. The light intermediate
chains (LICs) of cytoplasmic dynein consist of multiple
isoforms, which undergo post-translational modification
to produce a large number of species. DLIC1 is known to
be involved in assembly, organisation, and function of
centrosomes and mitotic spindles when bound to
pericentrin. DLIC2 is a subunit of cytoplasmic dynein 2
that may play a role in maintaining Golgi organisation
by binding cytoplasmic dynein 2 to its Golgi-associated
cargo.
Length = 490
Score = 28.7 bits (64), Expect = 4.8
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 310 GECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKREDID 360
G+ + ++G +G+GKTTL+ L G P G L+ ++ ED D
Sbjct: 45 GKNVLVLGEDGSGKTTLIAKLQGVEHP-----KKGRGLEYLYLNVHDEDRD 90
>gnl|CDD|73295 cd02019, NK, Nucleoside/nucleotide kinase (NK) is a protein
superfamily consisting of multiple families of enzymes
that share structural similarity and are functionally
related to the catalysis of the reversible phosphate
group transfer from nucleoside triphosphates to
nucleosides/nucleotides, nucleoside monophosphates, or
sugars. Members of this family play a wide variety of
essential roles in nucleotide metabolism, the
biosynthesis of coenzymes and aromatic compounds, as
well as the metabolism of sugar and sulfate..
Length = 69
Score = 28.8 bits (64), Expect = 5.0
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 313 IGIVGPNGAGKTTLLKLLT 331
I I G +G+GK+T+ K L
Sbjct: 2 IAITGGSGSGKSTVAKKLA 20
>gnl|CDD|57925 cd01854, YjeQ_engC, YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis)
represents a protein family whose members are broadly
conserved in bacteria and have been shown to be
essential to the growth of E. coli and B. subtilis.
Proteins of the YjeQ family contain all sequence motifs
typical of the vast class of P-loop-containing GTPases,
but show a circular permutation, with a G4-G1-G3 pattern
of motifs as opposed to the regular G1-G3-G4 pattern
seen in most GTPases. All YjeQ family proteins display a
unique domain architecture, which includes an N-terminal
OB-fold RNA-binding domain, the central permuted GTPase
domain, and a zinc knuckle-like C-terminal cysteine
domain. This domain architecture suggests a role for
YjeQ as a regulator of translation..
Length = 287
Score = 28.6 bits (64), Expect = 5.1
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 316 VGPNGAGKTTLLKLLTGKIK 335
VG +G GK+TL+ L +
Sbjct: 167 VGQSGVGKSTLINALLPDLD 186
>gnl|CDD|31195 COG0854, PdxJ, Pyridoxal phosphate biosynthesis protein [Coenzyme
metabolism].
Length = 243
Score = 28.7 bits (64), Expect = 5.2
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 341 ITLGTNL-KIATIDQKREDIDPDKSLASYLT---GSSGDSLMVRGESRHV 386
+ LG N+ IAT+ R PD A+++ G+ G ++ +R + RH+
Sbjct: 1 MLLGVNIDHIATLRNARGTPYPDPVEAAFIAEQAGADGITVHLREDRRHI 50
>gnl|CDD|73001 cd03242, ABC_RecF, RecF is a recombinational DNA repair ATPase that
maintains replication in the presence of DNA damage.
When replication is prematurely disrupted by DNA damage,
several recF pathway gene products play critical roles
processing the arrested replication fork, allowing it to
resume and complete its task. This CD represents the
nucleotide binding domain of RecF. RecF belongs to a
large superfamily of ABC transporters involved in the
transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases with a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 270
Score = 28.7 bits (64), Expect = 5.4
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 9/52 (17%)
Query: 110 FNLREQDRIENLSVGQTRCVA---------LMKMLISRPDILILDEPTNHLD 152
F L ++ + S GQ R +A L+K + +L+LD+ LD
Sbjct: 173 FFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELD 224
>gnl|CDD|133298 cd01898, Obg, Obg subfamily. The Obg nucleotide binding protein
subfamily has been implicated in stress response,
chromosome partitioning, replication initiation,
mycelium development, and sporulation. Obg proteins are
among a large group of GTP binding proteins conserved
from bacteria to humans. The E. coli homolog, ObgE is
believed to function in ribosomal biogenesis. Members
of the subfamily contain two equally and highly
conserved domains, a C-terminal GTP binding domain and
an N-terminal glycine-rich domain.
Length = 170
Score = 28.5 bits (65), Expect = 5.6
Identities = 11/20 (55%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
Query: 313 IGIVG-PNGAGKTTLLKLLT 331
+G+VG PN AGK+TLL ++
Sbjct: 3 VGLVGLPN-AGKSTLLSAIS 21
>gnl|CDD|36127 KOG0909, KOG0909, KOG0909, Peptide:N-glycanase [Posttranslational
modification, protein turnover, chaperones].
Length = 500
Score = 28.4 bits (63), Expect = 5.6
Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 204 YFESWKKNILQQEQIRYHNLKKKNEAEKEWLRYGVTARRKRN--VRRVKELHEIQKQLQE 261
Y K+N+L ++ + L++ + + RY +T RK+ R +E E+ +
Sbjct: 305 YILDHKENLLPRDLCKESVLQQTLQFINKRRRYSLTDDRKKELAQRDEREQIELIRGKTP 364
Query: 262 QKKS 265
+ +
Sbjct: 365 ETPT 368
>gnl|CDD|146027 pfam03193, DUF258, Protein of unknown function, DUF258.
Length = 161
Score = 28.3 bits (64), Expect = 5.7
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 315 IVGPNGAGKTTLLKLLTGKIK 335
+ G +G GK+TLL L ++
Sbjct: 40 LAGQSGVGKSTLLNALLPELD 60
>gnl|CDD|37481 KOG2270, KOG2270, KOG2270, Serine/threonine protein kinase involved
in cell cycle control [Signal transduction mechanisms,
Cell cycle control, cell division, chromosome
partitioning].
Length = 520
Score = 28.4 bits (63), Expect = 5.9
Identities = 24/132 (18%), Positives = 48/132 (36%), Gaps = 7/132 (5%)
Query: 413 MRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQLQGTILIVSHDRDFLDRTVTS 472
M+A + R L + NF + L TIT L + D + +V
Sbjct: 390 MKAYIPRRLDEVGNFERDVGKFAAGSLVARNLLYTTITGLDFDLAKHEKDDSLGEDSVEE 449
Query: 473 TIAAQNIEDPNGYWIKYAGGYSDMLVQQKKSHPTPQKKNPPAQSLQEETVKKEKKQKRKN 532
++ + + + ++KK +K +++ VK+ K++KRK
Sbjct: 450 EDGSEAESEGSEEEGEEGDEDIREHAKRKKKTAREKK-------ERKKKVKEAKREKRKT 502
Query: 533 RLSYSQKLLLER 544
++ K E+
Sbjct: 503 KIPKHVKKRKEK 514
>gnl|CDD|32858 COG3044, COG3044, Predicted ATPase of the ABC class [General
function prediction only].
Length = 554
Score = 28.4 bits (63), Expect = 5.9
Identities = 33/167 (19%), Positives = 55/167 (32%), Gaps = 18/167 (10%)
Query: 315 IVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKREDIDPDKSLASYLTGSSG 374
I G N GKTTLL I G + I RE + D LA +
Sbjct: 247 ITGGNFHGKTTLLTA-----------IERGVDNHI--PGDGRERVVTDVKLAK---AEAE 290
Query: 375 DSLMVRGESRHVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPT 434
+ V G ++ +I D + SG M A + + L++DE T
Sbjct: 291 EGRCVSGLD--LSLFINHLPGGKDTPDFVTGDASGSTSMAAWIQEAIEAGAKTLLIDEDT 348
Query: 435 NDLDFETLDFLERTITQLQGTILIVSHDRDFLDRTVTSTIAAQNIED 481
+ + D L + + +V +++ ++D
Sbjct: 349 SATNLLVRDVLAKESEGERTLTPLVDEIGSLRGDLISTIAVTGGLDD 395
>gnl|CDD|33504 COG3709, COG3709, Uncharacterized component of phosphonate
metabolism [Inorganic ion transport and metabolism].
Length = 192
Score = 28.4 bits (63), Expect = 5.9
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 306 RIHYGECIGIVGPNGAGKTTLL 327
R G I +VGP+GAGK TLL
Sbjct: 1 RTFMGRLIAVVGPSGAGKDTLL 22
>gnl|CDD|30002 cd01136, ATPase_flagellum-secretory_path_III, Flagellum-specific
ATPase/type III secretory pathway virulence-related
protein. This group of ATPases are responsible for the
export of flagellum and virulence-related proteins. The
bacterial flagellar motor is similar to the F0F1-ATPase,
in that they both are proton driven rotary molecular
devices. However, the main function of the bacterial
flagellar motor is to rotate the flagellar filament for
cell motility. Intracellular pathogens such as
Salmonella and Chlamydia also have proteins which are
similar to the flagellar-specific ATPase, but function
in the secretion of virulence-related proteins via the
type III secretory pathway..
Length = 326
Score = 28.3 bits (63), Expect = 6.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 310 GECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL 343
G+ +GI +G GK+TLL ++ D I L
Sbjct: 69 GQRLGIFAGSGVGKSTLLGMIARGTTADVNVIAL 102
>gnl|CDD|143815 pfam00025, Arf, ADP-ribosylation factor family. Pfam combines a
number of different Prosite families together.
Length = 174
Score = 28.4 bits (64), Expect = 6.2
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 313 IGIVGPNGAGKTTLLKLLTGK----IKPDCGF 340
I I+G + AGKTT+L L P GF
Sbjct: 17 ILILGLDNAGKTTILYKLKLGEIVTTIPTIGF 48
>gnl|CDD|32202 COG2019, AdkA, Archaeal adenylate kinase [Nucleotide transport
and metabolism].
Length = 189
Score = 28.3 bits (63), Expect = 6.4
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 28 IKPKERICLVGCNGSGKSTLLKIAAGITEP----QSGNVFLHSSSRLGYLEQNPDL 79
+K ++ + + G G GK+T+LKIA G++ L + + G +E ++
Sbjct: 1 MKGRKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKGLVEHRDEM 56
>gnl|CDD|35832 KOG0612, KOG0612, KOG0612, Rho-associated, coiled-coil containing
protein kinase [Signal transduction mechanisms].
Length = 1317
Score = 28.5 bits (63), Expect = 6.5
Identities = 20/104 (19%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Query: 514 AQSLQEETVKKEKKQKRKNRLSYSQKLLLERLPQEIHKIQLKIT-EKEQQINDQNLISNE 572
A ++ E K + + + + +L L+ ++ +I+ K++ EK + +NL+
Sbjct: 667 ALEIKLERKLKMLQNELEQENAEHHRLRLQDKEAQMKEIESKLSEEKSAREKAENLLLEI 726
Query: 573 GKEIHQLYHDLDQMYQ-------DVKEKEEQWLTLEIMQEEEKN 609
E+ L +D Q + + + L L+ M E+E +
Sbjct: 727 EAELEYLSNDYKQSQEKLNELRRSKDQLITEVLKLQSMLEQEIS 770
>gnl|CDD|133281 cd01881, Obg_like, The Obg-like subfamily consists of five
well-delimited, ancient subfamilies, namely Obg, DRG,
YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg,
DRG, YyaF/YchF, and Ygr210) are characterized by a
distinct glycine-rich motif immediately following the
Walker B motif (G3 box). Obg/CgtA is an essential gene
that is involved in the initiation of sporulation and
DNA replication in the bacteria Caulobacter and
Bacillus, but its exact molecular role is unknown.
Furthermore, several OBG family members possess a
C-terminal RNA-binding domain, the TGS domain, which is
also present in threonyl-tRNA synthetase and in
bacterial guanosine polyphosphatase SpoT. Nog1 is a
nucleolar protein that might function in ribosome
assembly. The DRG and Nog1 subfamilies are ubiquitous
in archaea and eukaryotes, the Ygr210 subfamily is
present in archaea and fungi, and the Obg and YyaF/YchF
subfamilies are ubiquitous in bacteria and eukaryotes.
The Obg/Nog1 and DRG subfamilies appear to form one
major branch of the Obg family and the Ygr210 and YchF
subfamilies form another branch. No GEFs, GAPs, or GDIs
for Obg have been identified.
Length = 176
Score = 28.2 bits (64), Expect = 6.6
Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 6/37 (16%)
Query: 315 IVG-PNGAGKTTLLKLLTGKIKPDCG---FITLGTNL 347
+VG PN GK+TLL LT KP F TL NL
Sbjct: 1 LVGLPN-VGKSTLLNALTNA-KPKVANYPFTTLEPNL 35
>gnl|CDD|30188 cd00464, SK, Shikimate kinase (SK) is the fifth enzyme in the
shikimate pathway, a seven-step biosynthetic pathway
which converts erythrose-4-phosphate to chorismic acid,
found in bacteria, fungi and plants. Chorismic acid is a
important intermediate in the synthesis of aromatic
compounds, such as aromatic amino acids, p-aminobenzoic
acid, folate and ubiquinone. Shikimate kinase catalyses
the phosphorylation of the 3-hydroxyl group of shikimic
acid using ATP..
Length = 154
Score = 28.2 bits (63), Expect = 6.7
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 313 IGIVGPNGAGKTTLLKLL 330
I ++G GAGKTT+ +LL
Sbjct: 2 IVLIGMMGAGKTTVGRLL 19
>gnl|CDD|36359 KOG1144, KOG1144, KOG1144, Translation initiation factor 5B
(eIF-5B) [Translation, ribosomal structure and
biogenesis].
Length = 1064
Score = 28.1 bits (62), Expect = 6.8
Identities = 21/136 (15%), Positives = 52/136 (38%), Gaps = 11/136 (8%)
Query: 480 EDPNGYWIKYAGGYSDMLVQQKKSHPTPQKKNPPAQSLQEETVKKEKKQKRKNRLSYSQK 539
ED + G + +++K P+ P + ++E +K +K+K + +K
Sbjct: 109 EDDLDKLLASLGEKDEPASEKEKKEAQPENVAPVEAAGEKEKKEKAAAKKKKEKKEKEKK 168
Query: 540 -------LLLERLPQEIHKIQLKITEKEQQINDQNLISNEGKEIHQLYHDLDQMYQDVKE 592
+ + + K + +TE + + K+ + + + +E
Sbjct: 169 KEDSAAAAAEKSVEAKEEKKEKSVTEPAEPEKKEAKGKKAEKKKPKGVRAMQEALAKRQE 228
Query: 593 KEEQWLTLEIMQEEEK 608
+EE+ + +EEE+
Sbjct: 229 EEER----QKREEEER 240
>gnl|CDD|30197 cd02024, NRK1, Nicotinamide riboside kinase (NRK) is an enzyme
involved in the metabolism of nicotinamide adenine
dinucleotide (NAD+). This enzyme catalyzes the
phosphorylation of nicotinamide riboside (NR) to form
nicotinamide mononucleotide (NMN). It defines the NR
salvage pathway of NAD+ biosynthesis in addition to the
pathways through nicotinic acid mononucleotide (NaMN).
This enzyme can also phosphorylate the anticancer drug
tiazofurin, which is an analog of nicotinamide
riboside..
Length = 187
Score = 28.3 bits (63), Expect = 6.8
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 313 IGIVGPNGAGKTTLLKLLTGKIKPDCGFI 341
+GI G +GKTTL KLL +I P+C I
Sbjct: 2 VGISGVTNSGKTTLAKLLQ-RILPNCCVI 29
>gnl|CDD|31299 COG1102, Cmk, Cytidylate kinase [Nucleotide transport and
metabolism].
Length = 179
Score = 28.3 bits (63), Expect = 6.9
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 17/77 (22%)
Query: 33 RICLVGCNGSGKSTLLKIAA---GITEPQSGNVFLHSSSRLG--------YLEQNPDLSH 81
I + G GSGK+T+ + A G+ +G +F + G Y E++P+
Sbjct: 2 VITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEFSRYAEEDPE--- 58
Query: 82 FSTISQYIDDTIKDTIE 98
I + ID K+ +
Sbjct: 59 ---IDKEIDRRQKELAK 72
>gnl|CDD|32496 COG2348, COG2348, Uncharacterized protein involved in methicillin
resistance [Defense mechanisms].
Length = 418
Score = 28.0 bits (62), Expect = 7.3
Identities = 10/64 (15%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 209 KKNILQQEQIRYHNLKKKNEAEKEWLRYGVTARRKRNVRRV-KELHEIQKQLQEQKKSFH 267
K + Q R+H++ + ++ L + + +RN+++ K+ ++++ +E+ F
Sbjct: 145 TKGLDDSIQPRWHSVLDLKDKTEDQLLKSFSKKTRRNIKKAEKKGVKVRRLSREELDLFS 204
Query: 268 STIQ 271
++
Sbjct: 205 ELMK 208
>gnl|CDD|147025 pfam04665, Pox_A32, Poxvirus A32 protein. The A32 protein is
thought to be involved in viral DNA packaging.
Length = 241
Score = 28.1 bits (63), Expect = 7.6
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 315 IVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLK 348
IVG +G+GKTT L L + I L T +
Sbjct: 18 IVGGSGSGKTTYLLSLLRTLVRKFKHIFLFTPVY 51
>gnl|CDD|29986 cd01120, RecA-like_NTPases, RecA-like NTPases. This family includes
the NTP binding domain of F1 and V1 H+ATPases, DnaB and
related helicases as well as bacterial RecA and related
eukaryotic and archaeal recombinases. This group also
includes bacterial conjugation proteins and related DNA
transfer proteins involved in type II and type IV
secretion..
Length = 165
Score = 28.2 bits (62), Expect = 7.6
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 5/65 (7%)
Query: 313 IGIVGPNGAGKTTLLKLLTGKI-KPDCGFITLGTNLKI----ATIDQKREDIDPDKSLAS 367
I + GP G+GKTTL L I + + +I + + D +
Sbjct: 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIV 61
Query: 368 YLTGS 372
+ T
Sbjct: 62 FATAD 66
>gnl|CDD|143801 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain. This
domain contains a P-loop motif, also found in several
other families such as pfam00071, pfam00025 and
pfam00063. Elongation factor Tu consists of three
structural domains, this plus two C-terminal beta barrel
domains.
Length = 185
Score = 27.9 bits (63), Expect = 7.6
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 313 IGIVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKI-ATID 353
IGI+G GKTTL L G I +K +D
Sbjct: 6 IGIIGHVDHGKTTLTDALLY----VTGAIDKRGEVKQEGELD 43
>gnl|CDD|35756 KOG0536, KOG0536, KOG0536, Flavohemoprotein b5+b5R [Energy
production and conversion].
Length = 145
Score = 28.0 bits (62), Expect = 7.9
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 494 SDMLVQQKKSHPTPQKKNPPAQSLQEETVKKEKKQKRKNRL 534
S + + +S+ TPQ PPA S K+++++ K L
Sbjct: 2 SKDGLNRPESNGTPQFAAPPATSGAHMPRSKKQRKRTKVAL 42
>gnl|CDD|144489 pfam00910, RNA_helicase, RNA helicase. This family includes RNA
helicases thought to be involved in duplex unwinding
during viral RNA replication. Members of this family
are found in a variety of single stranded RNA viruses.
Length = 105
Score = 28.0 bits (63), Expect = 7.9
Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 19/67 (28%)
Query: 34 ICLVGCNGSGKSTLLK-----IAAGITEPQSGNVFLHSSSRLGYLEQNPDLSHFSTISQY 88
I L G G GKSTL K + + P+ +V+ NPD + +
Sbjct: 1 IWLYGPPGCGKSTLAKYLARALLDHLGLPKKDSVYSR----------NPDDDFWDGYTGQ 50
Query: 89 ----IDD 91
IDD
Sbjct: 51 PVVIIDD 57
>gnl|CDD|133293 cd01893, Miro1, Miro1 subfamily. Miro (mitochondrial Rho)
proteins have tandem GTP-binding domains separated by a
linker region containing putative calcium-binding EF
hand motifs. Genes encoding Miro-like proteins were
found in several eukaryotic organisms. This CD
represents the N-terminal GTPase domain of Miro
proteins. These atypical Rho GTPases have roles in
mitochondrial homeostasis and apoptosis. Most Rho
proteins contain a lipid modification site at the
C-terminus; however, Miro is one of few Rho subfamilies
that lack this feature.
Length = 166
Score = 28.1 bits (63), Expect = 8.0
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 33 RICLVGCNGSGKSTLLKIAAGITEPQSGNV 62
RI L+G G GKS+L I + ++E NV
Sbjct: 2 RIVLIGDEGVGKSSL--IMSLVSEEFPENV 29
>gnl|CDD|35182 COG5623, CLP1, Predicted GTPase subunit of the pre-mRNA cleavage
complex [Translation, ribosomal structure and
biogenesis].
Length = 424
Score = 28.1 bits (62), Expect = 8.1
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 309 YGECIGIVGPNGAGKTTLLKLL 330
G + +VG + GKT+ L
Sbjct: 98 KGPTVMVVGGSQNGKTSFCFTL 119
>gnl|CDD|73042 cd03283, ABC_MutS-like, MutS-like homolog in eukaryotes. The
MutS protein initiates DNA mismatch repair by
recognizing mispaired and unpaired bases embedded in
duplex DNA and activating endo- and exonucleases to
remove the mismatch. Members of the MutS family
possess C-terminal domain with a conserved ATPase
activity that belongs to the ATP binding cassette (ABC)
superfamily. MutS homologs (MSH) have been identified
in most prokaryotic and all eukaryotic organisms
examined. Prokaryotes have two homologs (MutS1 and
MutS2), whereas seven MSH proteins (MSH1 to MSH7) have
been identified in eukaryotes. The homodimer MutS1 and
heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily
involved in mitotic mismatch repair, whereas MSH4-MSH5
is involved in resolution of Holliday junctions during
meiosis. All members of the MutS family contain the
highly conserved Walker A/B ATPase domain, and many
share a common mechanism of action. MutS1, MSH2-MSH3,
MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding
clamps, and recognition of specific DNA structures or
lesions results in ADP/ATP exchange..
Length = 199
Score = 27.9 bits (62), Expect = 8.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 26 LSIKPKERICLVGCNGSGKSTLLK 49
+ ++ K I + G N SGKST L+
Sbjct: 20 IDMEKKNGILITGSNMSGKSTFLR 43
>gnl|CDD|40010 KOG4813, KOG4813, KOG4813, Translation initiation factor eIF3, p35
subunit [Translation, ribosomal structure and
biogenesis].
Length = 248
Score = 27.7 bits (61), Expect = 8.7
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 500 QKKSHPTPQKKNPPAQSLQEETVKKEKKQKRKNRLSYSQKLL-LERLPQEIHKIQLKITE 558
K P KK +++ Q+E KE+++K K R + + L+ L QE K++L+ +
Sbjct: 50 VKPEAPEKVKKKKASKADQKERKAKERQEKAKKRKAEPESPAALKPLGQEAEKLRLRALQ 109
Query: 559 KEQ 561
+E
Sbjct: 110 EES 112
>gnl|CDD|133353 cd04153, Arl5_Arl8, Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and
Arl8, like Arl4 and Arl7, are localized to the nucleus
and nucleolus. Arl5 is developmentally regulated during
embryogenesis in mice. Human Arl5 interacts with the
heterochromatin protein 1-alpha (HP1alpha), a nonhistone
chromosomal protein that is associated with
heterochromatin and telomeres, and prevents telomere
fusion. Arl5 may also play a role in embryonic nuclear
dynamics and/or signaling cascades. Arl8 was identified
from a fetal cartilage cDNA library. It is found in
brain, heart, lung, cartilage, and kidney. No function
has been assigned for Arl8 to date.
Length = 174
Score = 27.7 bits (62), Expect = 8.8
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 16/69 (23%)
Query: 315 IVGPNGAGKTTLL-KLLTGKI---KPDCGFITLGTN---LKIATIDQKREDIDPDKSL-- 365
IVG + AGKTT+L + L G++ P T+G+N + I DI +SL
Sbjct: 20 IVGLDNAGKTTILYQFLLGEVVHTSP-----TIGSNVEEIVYKNIRFLMWDIGGQESLRS 74
Query: 366 --ASYLTGS 372
+Y T +
Sbjct: 75 SWNTYYTNT 83
>gnl|CDD|145920 pfam03029, ATP_bind_1, Conserved hypothetical ATP binding protein.
Members of this family are found in a range of archaea
and eukaryotes and have hypothesized ATP binding
activity.
Length = 234
Score = 27.7 bits (62), Expect = 8.9
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 315 IVGPNGAGKTTLLKLLTGKIKPDCGFITLGTNLKIA 350
+VG G+GKTT + L+ +I P G NL A
Sbjct: 1 VVGGAGSGKTTFVGALS-EILPLRGRSVYVVNLDPA 35
>gnl|CDD|37239 KOG2028, KOG2028, KOG2028, ATPase related to the helicase subunit
of the Holliday junction resolvase [Replication,
recombination and repair].
Length = 554
Score = 27.7 bits (61), Expect = 9.0
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 296 DRLVVKDFSLR--IHYGECIGIV--GPNGAGKTTLLKLLTGKIK-PDCGFITL 343
LV +D LR I ++ GP G GKTTL +L+ K F+ L
Sbjct: 144 SHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVEL 196
>gnl|CDD|109493 pfam00437, GSPII_E, Type II/IV secretion system protein. This
family contains both type II and type IV pathway
secretion proteins from bacteria. VirB11 ATPase is a
subunit of the Agrobacterium tumefaciens transfer DNA
(T-DNA) transfer system, a type IV secretion pathway
required for delivery of T-DNA and effector proteins to
plant cells during infection.
Length = 283
Score = 27.6 bits (62), Expect = 9.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 313 IGIVGPNGAGKTTLLKLLTGKIKPD 337
I + G G+GKTTLL L +I D
Sbjct: 142 ILVSGGTGSGKTTLLYALLNEINTD 166
>gnl|CDD|73041 cd03282, ABC_MSH4_euk, MutS4 homolog in eukaryotes. The MutS
protein initiates DNA mismatch repair by recognizing
mispaired and unpaired bases embedded in duplex DNA and
activating endo- and exonucleases to remove the
mismatch. Members of the MutS family possess
C-terminal domain with a conserved ATPase activity that
belongs to the ATP binding cassette (ABC) superfamily.
MutS homologs (MSH) have been identified in most
prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2),
whereas seven MSH proteins (MSH1 to MSH7) have been
identified in eukaryotes. The homodimer MutS1 and
heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily
involved in mitotic mismatch repair, whereas MSH4-MSH5
is involved in resolution of Holliday junctions during
meiosis. All members of the MutS family contain the
highly conserved Walker A/B ATPase domain, and many
share a common mechanism of action. MutS1, MSH2-MSH3,
MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding
clamps, and recognition of specific DNA structures or
lesions results in ADP/ATP exchange..
Length = 204
Score = 28.0 bits (62), Expect = 9.2
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 17/66 (25%)
Query: 33 RICLV-GCNGSGKSTLLK------IAAGITEPQSGN-----VFLHSSSRLGY---LEQNP 77
R ++ G N SGKST LK I A I +F SRL +E+N
Sbjct: 30 RFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDSMERN- 88
Query: 78 DLSHFS 83
LS F+
Sbjct: 89 -LSTFA 93
>gnl|CDD|144508 pfam00931, NB-ARC, NB-ARC domain.
Length = 285
Score = 27.7 bits (62), Expect = 9.5
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 313 IGIVGPNGAGKTTLLK 328
+GIVG G GKTTL K
Sbjct: 22 VGIVGMGGVGKTTLAK 37
>gnl|CDD|35701 KOG0480, KOG0480, KOG0480, DNA replication licensing factor, MCM6
component [Replication, recombination and repair].
Length = 764
Score = 27.6 bits (61), Expect = 9.7
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 15 IGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLG 71
GG+ S++ +C+VG G+GKS LK + P+S +SS G
Sbjct: 362 FGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFS-PRSVYTSGKASSAAG 417
>gnl|CDD|30191 cd01673, dNK, Deoxyribonucleoside kinase (dNK) catalyzes the
phosphorylation of deoxyribonucleosides to yield
corresponding monophosphates (dNMPs). This family
consists of various deoxynucleoside kinases including
deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC
2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC
2.7.1.21) kinases. They are key enzymes in the salvage
of deoxyribonucleosides originating from extra- or
intracellular breakdown of DNA..
Length = 193
Score = 27.5 bits (61), Expect = 9.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 313 IGIVGPNGAGKTTLLKLL 330
I + G GAGK+TL K L
Sbjct: 2 IVVEGNIGAGKSTLAKEL 19
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.317 0.134 0.387
Gapped
Lambda K H
0.267 0.0626 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 7,350,758
Number of extensions: 393769
Number of successful extensions: 2815
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2537
Number of HSP's successfully gapped: 669
Length of query: 610
Length of database: 6,263,737
Length adjustment: 99
Effective length of query: 511
Effective length of database: 4,124,446
Effective search space: 2107591906
Effective search space used: 2107591906
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.1 bits)