BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254781124|ref|YP_003065537.1| hypothetical protein
CLIBASIA_05130 [Candidatus Liberibacter asiaticus str. psy62]
(101 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|254781124|ref|YP_003065537.1| hypothetical protein CLIBASIA_05130 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040801|gb|ACT57597.1| hypothetical protein CLIBASIA_05130 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 101
Score = 187 bits (476), Expect = 3e-46, Method: Composition-based stats.
Identities = 101/101 (100%), Positives = 101/101 (100%)
Query: 1 MNPHGLMYAPKEGNQYRPLRKEVRNAFPKILKSIEKALEPYVDPLIEPVEIGKEGMVDEG 60
MNPHGLMYAPKEGNQYRPLRKEVRNAFPKILKSIEKALEPYVDPLIEPVEIGKEGMVDEG
Sbjct: 1 MNPHGLMYAPKEGNQYRPLRKEVRNAFPKILKSIEKALEPYVDPLIEPVEIGKEGMVDEG 60
Query: 61 YRLHICALIKLLENRSNHQTKNDINKCVLSEEFTIQNNKGK 101
YRLHICALIKLLENRSNHQTKNDINKCVLSEEFTIQNNKGK
Sbjct: 61 YRLHICALIKLLENRSNHQTKNDINKCVLSEEFTIQNNKGK 101
>gi|254780203|ref|YP_003064616.1| hypothetical protein CLIBASIA_00440 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254039880|gb|ACT56676.1| hypothetical protein CLIBASIA_00440 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 82
Score = 94.4 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 28/62 (45%), Positives = 45/62 (72%), Gaps = 3/62 (4%)
Query: 15 QYRPLRKEVRNAFPKILKSIEKALEPY-VDPLIEPVEIGKEGMVDEGYRLHICALIKLLE 73
+YRP ++EVR+AFP+++K++EK L + V+PL PV+ +G E Y H+C LI+LL+
Sbjct: 5 KYRPSKEEVRDAFPELIKALEKGLSTFDVEPLKNPVKSHGKGY--ESYISHVCELIELLK 62
Query: 74 NR 75
N+
Sbjct: 63 NK 64
>gi|254781189|ref|YP_003065602.1| hypothetical protein CLIBASIA_05480 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040866|gb|ACT57662.1| hypothetical protein CLIBASIA_05480 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 252
Score = 41.2 bits (95), Expect = 0.042, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 14 NQYRPLRKEVRNAFP-KILKSIEKALEPYVDPLIEPVEIGKEGMVDEGYRLHICALIKLL 72
N+YRP + +R P K++K E + YVDPL + Y H CAL+ L
Sbjct: 178 NKYRPSAEAMRTICPTKLMKIFEDTISLYVDPLT------PRDISFTQYEKHACALVNWL 231
Query: 73 E 73
E
Sbjct: 232 E 232
>gi|145323938|ref|NP_001077558.1| unknown protein [Arabidopsis thaliana]
gi|332191615|gb|AEE29736.1| uncharacterized protein [Arabidopsis thaliana]
Length = 1014
Score = 38.9 bits (89), Expect = 0.26, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 12/92 (13%)
Query: 20 RKEVRNAFPKILKSIEKALEPYVDPLIEPVEIGKEGMVDEGYRLHICALIKLLENRSNHQ 79
RK V +A ++L +E YVDP ++ + K+ + + +C+ I++L+ ++ +
Sbjct: 874 RKLVFDAVNEMLGKKLAFVESYVDPWMKQAKARKKVLSAQNLLKELCSEIEILQKQAKKR 933
Query: 80 T------------KNDINKCVLSEEFTIQNNK 99
+ + D KC+L E+ IQ+ K
Sbjct: 934 SENLLLLEEEEEEEEDFLKCILDEDMAIQSEK 965
>gi|15221824|ref|NP_173297.1| unknown protein [Arabidopsis thaliana]
gi|9795593|gb|AAF98411.1|AC026238_3 Unknown protein [Arabidopsis thaliana]
gi|20856609|gb|AAM26675.1| At1g18620/F25I16_13 [Arabidopsis thaliana]
gi|32306507|gb|AAP78937.1| At1g18620 [Arabidopsis thaliana]
gi|332191614|gb|AEE29735.1| uncharacterized protein [Arabidopsis thaliana]
Length = 978
Score = 38.5 bits (88), Expect = 0.28, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 12/92 (13%)
Query: 20 RKEVRNAFPKILKSIEKALEPYVDPLIEPVEIGKEGMVDEGYRLHICALIKLLENRSNHQ 79
RK V +A ++L +E YVDP ++ + K+ + + +C+ I++L+ ++ +
Sbjct: 838 RKLVFDAVNEMLGKKLAFVESYVDPWMKQAKARKKVLSAQNLLKELCSEIEILQKQAKKR 897
Query: 80 T------------KNDINKCVLSEEFTIQNNK 99
+ + D KC+L E+ IQ+ K
Sbjct: 898 SENLLLLEEEEEEEEDFLKCILDEDMAIQSEK 929
>gi|91216863|ref|ZP_01253827.1| hypothetical protein P700755_04997 [Psychroflexus torquis ATCC
700755]
gi|91185024|gb|EAS71403.1| hypothetical protein P700755_04997 [Psychroflexus torquis ATCC
700755]
Length = 349
Score = 35.0 bits (79), Expect = 3.1, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 7/54 (12%)
Query: 37 ALEPYVDPLIEPVE-----IGKEGMVDEGYRLHICALIKLLENRSN--HQTKND 83
ALEP++DP+I+ V K G V + + LH+ L+ + +N+ N H K++
Sbjct: 108 ALEPFIDPVIQKVSASVSSSFKRGQVLQSHLLHLKRLLAIQKNKFNTLHNFKSE 161
>gi|261332578|emb|CBH15573.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 1366
Score = 35.0 bits (79), Expect = 3.5, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 7 MYAPKEGNQYRPLRKEVRNAFPKILKSIEKALEPYV-DPLIEPVEIGKEGMVDEGYRLHI 65
+YAP + RP + R+++ + + + PY+ P+ + G +D L
Sbjct: 902 LYAPSTSHVLRPTAADTRDSYVSKILKLARQTSPYILKPIARENSKNRRGFMDNSTTLRE 961
Query: 66 CALIKLLENRSNHQ 79
+L RS H+
Sbjct: 962 FQATRLAIQRSLHE 975
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.308 0.134 0.380
Lambda K H
0.267 0.0414 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 941,334,900
Number of Sequences: 14124377
Number of extensions: 34517233
Number of successful extensions: 68969
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 68962
Number of HSP's gapped (non-prelim): 9
length of query: 101
length of database: 4,842,793,630
effective HSP length: 70
effective length of query: 31
effective length of database: 3,854,087,240
effective search space: 119476704440
effective search space used: 119476704440
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 75 (33.5 bits)