RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781124|ref|YP_003065537.1| hypothetical protein
CLIBASIA_05130 [Candidatus Liberibacter asiaticus str. psy62]
         (101 letters)



>gnl|CDD|37232 KOG2021, KOG2021, KOG2021, Nuclear mRNA export factor receptor
           LOS1/Exportin-t (importin beta superfamily) [Nuclear
           structure, Intracellular trafficking, secretion, and
           vesicular transport, Translation, ribosomal structure
           and biogenesis].
          Length = 980

 Score = 25.7 bits (56), Expect = 2.9
 Identities = 9/34 (26%), Positives = 19/34 (55%)

Query: 14  NQYRPLRKEVRNAFPKILKSIEKALEPYVDPLIE 47
           N++  +R  VR  F +++  +   + P++  LIE
Sbjct: 708 NKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIE 741


>gnl|CDD|37518 KOG2307, KOG2307, KOG2307, Low density lipoprotein receptor
           [Intracellular trafficking, secretion, and vesicular
           transport].
          Length = 705

 Score = 24.6 bits (53), Expect = 6.9
 Identities = 11/44 (25%), Positives = 18/44 (40%)

Query: 22  EVRNAFPKILKSIEKALEPYVDPLIEPVEIGKEGMVDEGYRLHI 65
           +V   +    K +      YV   + PV+  KEG+  E  + H 
Sbjct: 555 DVPRLYRWTNKEVPTTHSSYVVTALRPVKALKEGLKCELEQPHT 598


>gnl|CDD|88599 cd04823, ALAD_PBGS_aspartate_rich, Porphobilinogen synthase (PBGS),
           which is also called delta-aminolevulinic acid
           dehydratase (ALAD), catalyzes the condensation of two
           5-aminolevulinic acid (ALA) molecules to form the
           pyrrole porphobilinogen (PBG), which is the second step
           in the biosynthesis of tetrapyrroles, such as heme,
           vitamin B12 and chlorophyll. This reaction involves the
           formation of a Schiff base link between the substrate
           and the enzyme. PBGSs are metalloenzymes, some of which
           have a second, allosteric metal binding site, beside the
           metal ion binding site in their active site. Although
           PBGS is a family of homologous enzymes, its metal ion
           utilization at catalytic site varies between zinc and
           magnesium and/or potassium. PBGS can be classified into
           two groups based on differences in their active site
           metal binding site. All of PBGS_aspartate_rich contain
           an aspartate rich metal binding site with the general
           sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an
           allosteric magnesium binding sequence RX~164DX~65EXXXD
           and are activated by magnesium and/or potassium, but not
           by zinc. PBGSs_aspartate_rich are found in some
           bacterial species and photosynthetic organisms such as
           vascular plants, mosses and algae, but not in archaea..
          Length = 320

 Score = 24.3 bits (53), Expect = 8.0
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 16/61 (26%)

Query: 1   MNPHGLMYAPKEGNQYRPLRKEVRNAFPKILKSIEKALEPYVDPLIEPVEIGKEGMVDEG 60
            NP  L+         R +R  ++ AFP++    + AL+PY          G +G+V +G
Sbjct: 90  YNPDNLVC--------RAIRA-IKEAFPELGIITDVALDPYTSH-------GHDGIVRDG 133

Query: 61  Y 61
            
Sbjct: 134 G 134


>gnl|CDD|48119 cd03192, GST_C_Sigma_like, GST_C family, Class Sigma_like;
          composed of GSTs belonging to class Sigma and similar
          proteins, including GSTs from class Mu, Pi, and Alpha.
          GSTs are cytosolic dimeric proteins involved in
          cellular detoxification by catalyzing the conjugation
          of glutathione (GSH) with a wide range of endogenous
          and xenobiotic alkylating agents, including
          carcinogens, therapeutic drugs, environmental toxins,
          and products of oxidative stress. The GST fold contains
          an N-terminal thioredoxin-fold domain and a C-terminal
          alpha helical domain, with an active site located in a
          cleft between the two domains. GSH binds to the
          N-terminal domain while the hydrophobic substrate
          occupies a pocket in the C-terminal domain. Vertebrate
          class Sigma GSTs are characterized as GSH-dependent
          hematopoietic prostaglandin (PG) D synthases and are
          responsible for the production of PGD2 by catalyzing
          the isomerization of PGH2. The functions of PGD2
          include the maintenance of body temperature, inhibition
          of platelet aggregation, bronchoconstriction,
          vasodilation, and mediation of allergy and
          inflammation. Other class Sigma members include the
          class II insect GSTs, S-crystallins from cephalopods,
          nematode-specific GSTs, and 28-kDa GSTs from parasitic
          flatworms. Drosophila GST2 is associated with indirect
          flight muscle and exhibits preference for catalyzing
          GSH conjugation to lipid peroxidation products,
          indicating an anti-oxidant role. S-crystallin
          constitutes the major lens protein in cephalopod eyes
          and is responsible for lens transparency and proper
          refractive index. The 28-kDa GST from Schistosoma is a
          multifunctional enzyme, exhibiting GSH transferase, GSH
          peroxidase, and PGD2 synthase activities, and may play
          an important role in host-parasite interactions. Also
          members are novel GSTs from the fungus Cunninghamella
          elegans, designated as class Gamma, and from the
          protozoan Blepharisma japonicum, described as a
          light-inducible GST..
          Length = 104

 Score = 24.1 bits (52), Expect = 9.3
 Identities = 9/36 (25%), Positives = 16/36 (44%)

Query: 4  HGLMYAPKEGNQYRPLRKEVRNAFPKILKSIEKALE 39
              Y      +    ++ ++ A PK LK +EK L+
Sbjct: 21 AKYFYEKDGEEKKEKKKEFLKEAIPKYLKKLEKILK 56


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.315    0.137    0.398 

Gapped
Lambda     K      H
   0.267   0.0479    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,198,594
Number of extensions: 53628
Number of successful extensions: 120
Number of sequences better than 10.0: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 14
Length of query: 101
Length of database: 6,263,737
Length adjustment: 68
Effective length of query: 33
Effective length of database: 4,794,325
Effective search space: 158212725
Effective search space used: 158212725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.0 bits)