RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781124|ref|YP_003065537.1| hypothetical protein
CLIBASIA_05130 [Candidatus Liberibacter asiaticus str. psy62]
         (101 letters)



>gnl|CDD|177550 PHA03173, PHA03173, UL37 tegument protein; Provisional.
          Length = 1028

 Score = 25.4 bits (56), Expect = 3.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query: 59  EGYRLHICALIKLLE 73
           +GYR  + ALI LLE
Sbjct: 638 DGYRTKLTALIALLE 652


>gnl|CDD|177874 PLN02229, PLN02229, alpha-galactosidase.
          Length = 427

 Score = 25.3 bits (55), Expect = 4.0
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 4/30 (13%)

Query: 43  DPLIEPVEIGKEGMVDEGYRLH--ICALIK 70
           DP  + +E+G  GM  E YR H  I AL+K
Sbjct: 267 DP--DMLEVGNGGMTYEEYRGHFSIWALMK 294


>gnl|CDD|130805 TIGR01744, XPRTase, xanthine phosphoribosyltransferase.  This model
           represent a xanthine-specific phosphoribosyltransferase
           of Bacillus subtilis and closely related proteins from
           other species, mostly from other Gram-positive bacteria.
           The adjacent gene is a xanthine transporter; B. subtilis
           can import xanthine for the purine salvage pathway or
           for catabolism to obtain nitrogen.
          Length = 191

 Score = 24.4 bits (53), Expect = 6.3
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 11/41 (26%)

Query: 34  IEKALEPYVDPLIEPVEIGKEGMVDEGYRLHICALIKLLEN 74
           IEK+ +            G++ +V+ GYR+   A I+ LE 
Sbjct: 154 IEKSFQN-----------GRQELVELGYRVESLARIQSLEE 183


>gnl|CDD|163198 TIGR03272, methan_mark_6, putative methanogenesis marker protein 6.
            Members of this protein family, to date, are found in a
           completed prokaryotic genome if and only if the species
           is one of the archaeal methanogens. The exact function
           is unknown, but likely is linked to methanogenesis or a
           process closely connected to it.
          Length = 132

 Score = 24.3 bits (53), Expect = 7.3
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 7/51 (13%)

Query: 9   APKEGNQYRPLRKEVRNAFPKILKSIEKALEPYVDPLIEPVEIGKEGMVDE 59
            P+ G  +  L  EV     ++L  I +ALE    P    VE  ++  VDE
Sbjct: 80  GPRPG--FHQLEAEV-----ELLDRIGEALEKLEKPKEVEVEEPEKISVDE 123


>gnl|CDD|177774 PLN00179, PLN00179, acyl- [acyl-carrier protein] desaturase.
          Length = 390

 Score = 23.9 bits (52), Expect = 8.8
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 4/38 (10%)

Query: 17 RPLRKEVRNAFPKILKSIEKALEPYVD----PLIEPVE 50
          R +  +V ++ P     I K+LE + +    PL++PVE
Sbjct: 47 REVHVQVTHSMPPEKLEIFKSLEGWAEENLLPLLKPVE 84


>gnl|CDD|161900 TIGR00487, IF-2, translation initiation factor IF-2.  This model
           discriminates eubacterial (and mitochondrial)
           translation initiation factor 2 (IF-2), encoded by the
           infB gene in bacteria, from similar proteins in the
           Archaea and Eukaryotes. In the bacteria and in
           organelles, the initiator tRNA is charged with
           N-formyl-Met instead of Met. This translation factor
           acts in delivering the initator tRNA to the ribosome. It
           is one of a number of GTP-binding translation factors
           recognized by the pfam model GTP_EFTU.
          Length = 587

 Score = 24.0 bits (52), Expect = 8.8
 Identities = 8/32 (25%), Positives = 15/32 (46%)

Query: 22  EVRNAFPKILKSIEKALEPYVDPLIEPVEIGK 53
              +   K++  I  A++  +DP  E   IG+
Sbjct: 463 RYYSVIYKLIDEIRAAMKGMLDPEYEEEIIGQ 494


>gnl|CDD|179229 PRK01122, PRK01122, potassium-transporting ATPase subunit B;
           Provisional.
          Length = 679

 Score = 24.0 bits (53), Expect = 9.8
 Identities = 9/14 (64%), Positives = 11/14 (78%), Gaps = 2/14 (14%)

Query: 43  DP--LIEPVEIGKE 54
           +P  LIE VEIGK+
Sbjct: 551 NPTKLIEVVEIGKQ 564


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.315    0.137    0.398 

Gapped
Lambda     K      H
   0.267   0.0679    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,622,406
Number of extensions: 90087
Number of successful extensions: 149
Number of sequences better than 10.0: 1
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 21
Length of query: 101
Length of database: 5,994,473
Length adjustment: 68
Effective length of query: 33
Effective length of database: 4,525,129
Effective search space: 149329257
Effective search space used: 149329257
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.1 bits)