RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781124|ref|YP_003065537.1| hypothetical protein
CLIBASIA_05130 [Candidatus Liberibacter asiaticus str. psy62]
         (101 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 28.4 bits (62), Expect = 0.39
 Identities = 6/19 (31%), Positives = 11/19 (57%), Gaps = 3/19 (15%)

Query: 31 LKSIEKALEPYVD---PLI 46
          LK ++ +L+ Y D   P +
Sbjct: 22 LKKLQASLKLYADDSAPAL 40


>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium
          free, APO, signaling protein; HET: MSE; 1.15A {Homo
          sapiens} SCOP: a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A
          1a03_A 1cnp_A 1jwd_A 2cnp_A 2jtt_A
          Length = 90

 Score = 26.3 bits (58), Expect = 1.8
 Identities = 12/52 (23%), Positives = 27/52 (51%)

Query: 7  MYAPKEGNQYRPLRKEVRNAFPKILKSIEKALEPYVDPLIEPVEIGKEGMVD 58
           Y+ +EG+++   +KE++    K L    K  +  +  L+E ++  K+  V+
Sbjct: 18 KYSGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEVN 69


>3lig_A Fructosyltransferase; five bladed beta-propeller fold, hydrolase;
          1.80A {Aspergillus japonicus} PDB: 3ldk_A* 3lem_A*
          3ldr_A 3lih_A* 3lf7_A 3lfi_A*
          Length = 634

 Score = 26.3 bits (57), Expect = 2.0
 Identities = 3/24 (12%), Positives = 5/24 (20%), Gaps = 6/24 (25%)

Query: 1  MN-PHGLMYAPKEGN-----QYRP 18
          +  P      P  G       +  
Sbjct: 39 IGDPCAHYTDPSTGLFHVGFLHDG 62


>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl
          phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
          Length = 497

 Score = 25.1 bits (54), Expect = 3.9
 Identities = 12/57 (21%), Positives = 22/57 (38%)

Query: 18 PLRKEVRNAFPKILKSIEKALEPYVDPLIEPVEIGKEGMVDEGYRLHICALIKLLEN 74
           LR  V     K+ +SIE  L      L+   ++   G+  +     +  L  L+ +
Sbjct: 5  FLRGTVEKEVTKVKQSIEDELIRSDSQLMNFPQLPSNGIPQDDVIEELNKLNDLIPH 61


>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein.,
          structural genomics, PSI-2, protein structure
          initiative; HET: CIT; 2.70A {Streptococcus mutans
          UA159}
          Length = 519

 Score = 24.8 bits (54), Expect = 5.5
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 3  PHGLMYAPKEGNQYRPLRKEVRNAFPKILKSIEKALE 39
            G +   K   +     K V+ +  K+L SI +A+E
Sbjct: 21 FEGELAHIKSYKESSRQVKPVKPSDDKLLSSIHEAIE 57


>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars,
          antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces
          venezuelae} PDB: 2oge_A*
          Length = 399

 Score = 24.5 bits (52), Expect = 6.3
 Identities = 7/19 (36%), Positives = 9/19 (47%)

Query: 15 QYRPLRKEVRNAFPKILKS 33
           Y  LR E   A  ++L S
Sbjct: 38 AYEELRAETDAAIARVLDS 56


>1xny_A Pccase, propionyl-COA carboxylase complex B subunit, PCC;
           polyketide, polyketide synthase, acyl-COA carboxylase,
           carboxyltransferase; HET: 191 BTN; 2.20A {Streptomyces
           coelicolor} SCOP: c.14.1.4 c.14.1.4 PDB: 1xnv_A* 1xo6_A
           1xnw_A
          Length = 530

 Score = 24.0 bits (51), Expect = 8.9
 Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 20  RKEVRNAFPKILKSIEKALEPYVDPLIEPVEIGKEGMVDE-----GYRLHICALIKLLEN 74
           R+ + +A      +  + ++ Y D L+ P    + G VD        R HI   ++ L  
Sbjct: 456 RRTIADAGDDAEATRARLIQEYEDALLNPYTAAERGYVDAVIMPSDTRRHIVRGLRQLRT 515

Query: 75  R 75
           +
Sbjct: 516 K 516


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.315    0.137    0.398 

Gapped
Lambda     K      H
   0.267   0.0619    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 858,325
Number of extensions: 35769
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 13
Length of query: 101
Length of database: 5,693,230
Length adjustment: 66
Effective length of query: 35
Effective length of database: 4,093,126
Effective search space: 143259410
Effective search space used: 143259410
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.3 bits)