Query gi|254781125|ref|YP_003065538.1| hypothetical protein CLIBASIA_05135 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 59
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 22:28:04 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781125.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2gso_A Phosphodiesterase-nucl 12.7 84 0.0025 14.7 1.1 20 18-37 38-57 (90)
2 >2zg6_A Putative uncharacteriz 10.8 1.4E+02 0.0041 13.5 2.1 22 34-56 53-74 (86)
3 >1mg7_A Early switch protein X 10.1 61 0.0018 15.5 -0.3 25 2-26 22-47 (417)
4 >1xrs_A D-lysine 5,6-aminomuta 9.2 34 0.001 16.9 -1.9 20 19-38 256-277 (516)
5 >3dwl_A Actin-related protein 7.9 58 0.0017 15.6 -1.1 44 3-46 107-154 (219)
6 >2fwk_A U6 snRNA-associated SM 7.5 1.9E+02 0.0057 12.8 1.6 17 18-34 54-70 (121)
7 >3kp1_A D-ornithine aminomutas 7.5 31 0.00092 17.1 -2.7 21 18-38 117-139 (393)
8 >3kwr_A Putative RNA-binding p 6.9 1.9E+02 0.0057 12.8 1.2 13 23-35 8-20 (97)
9 >3dkx_A Replication protein RE 6.7 2.1E+02 0.0063 12.5 1.5 16 20-35 50-65 (130)
10 >1q16_B Respiratory nitrate re 6.6 2.1E+02 0.0063 12.5 1.3 11 48-58 34-44 (86)
No 1
>>2gso_A Phosphodiesterase-nucleotide pyrophosphatase; alpha beta, NPP, hydrolase; 1.30A {Xanthomonas axonopodis PV} PDB: 2gsn_A 2gsu_A* 2rh6_A* (A:228-317)
Probab=12.65 E-value=84 Score=14.74 Aligned_cols=20 Identities=20% Similarity=0.394 Sum_probs=16.4
Q ss_pred EEECCCCCEEEEEECCCHHH
Q ss_conf 73025875037871114377
Q gi|254781125|r 18 RLSAKDPHYNVIFRDEVPSF 37 (59)
Q Consensus 18 rlsakdphynvifrdevpsf 37 (59)
.|..+.||++|-.++++|.-
T Consensus 38 ~L~~~~~h~~vy~k~~iP~r 57 (90)
T 2gso_A 38 SVLGAHDHYDCWRKAELPAR 57 (90)
T ss_dssp HHSEECSSEEEEEGGGSCGG
T ss_pred HHHHHHCCHHHHHHHHHHHH
T ss_conf 88763114334337679998
No 2
>>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii} (A:13-98)
Probab=10.77 E-value=1.4e+02 Score=13.53 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=16.7
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 43778986168711346888887
Q gi|254781125|r 34 VPSFIYETLNIPADKRKMAVIRS 56 (59)
Q Consensus 34 vpsfiyetlnipadkrkmavirs 56 (59)
+-.|.|| ||||.+.+-..-+.|
T Consensus 53 ~ke~LYe-L~i~Ps~~li~~l~~ 74 (86)
T 2zg6_A 53 PKDFLYI-LGIYPSERLVKELKE 74 (86)
T ss_dssp HHHHHHH-HTCCCCHHHHHHHHH
T ss_pred HHHHHHH-HCCCHHHHHHHHHHH
T ss_conf 9999998-266648999999999
No 3
>>1mg7_A Early switch protein XOL-1 2.2K splice form; alpha-beta, gene regulation; 1.55A {Caenorhabditis elegans} (A:)
Probab=10.09 E-value=61 Score=15.50 Aligned_cols=25 Identities=40% Similarity=0.620 Sum_probs=14.0
Q ss_pred CHHHHHHHHCCCCCEE-EEECCCCCE
Q ss_conf 2489999850786414-730258750
Q gi|254781125|r 2 SPILEYIRCLNDPNRY-RLSAKDPHY 26 (59)
Q Consensus 2 spileyirclndpnry-rlsakdphy 26 (59)
+|.+.|..|+||||-- .-.+-.||-
T Consensus 22 ~~~~t~~e~~~~~~~~~~~~g~APHv 47 (417)
T 1mg7_A 22 SPVLTYMETEDDPNFRNSKLAAAPHT 47 (417)
T ss_dssp CHHHHTC----------CEEEEEEEE
T ss_pred CCCEEEEEECCCCCCCCCCCCCCCEE
T ss_conf 76226887316877666534678717
No 4
>>1xrs_A D-lysine 5,6-aminomutase alpha subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'- deoxyadenosine, radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} (A:)
Probab=9.18 E-value=34 Score=16.86 Aligned_cols=20 Identities=30% Similarity=0.557 Sum_probs=14.3
Q ss_pred EECCCCCEEEEEECCCH--HHH
Q ss_conf 30258750378711143--778
Q gi|254781125|r 19 LSAKDPHYNVIFRDEVP--SFI 38 (59)
Q Consensus 19 lsakdphynvifrdevp--sfi 38 (59)
.--.||-||++|||--+ ||+
T Consensus 256 ~~lnD~~YgILfRdINm~Rtfv 277 (516)
T 1xrs_A 256 VMLNDALYGILFRDINMQRTMI 277 (516)
T ss_dssp EEECCSSHHHHHHCBCHHHHHH
T ss_pred HHHCCHHHCCEECCCCHHHHHH
T ss_conf 2320223320003653566788
No 5
>>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoplasm, cytoskeleton, nucleotide-binding; HET: ATP; 3.78A {Schizosaccharomyces pombe} (A:1-173,A:382-427)
Probab=7.89 E-value=58 Score=15.63 Aligned_cols=44 Identities=14% Similarity=0.225 Sum_probs=33.1
Q ss_pred HHHHHH---HHCCCCCEEEEECCCCCEEEE-EECCCHHHHHHHHCCCH
Q ss_conf 489999---850786414730258750378-71114377898616871
Q gi|254781125|r 3 PILEYI---RCLNDPNRYRLSAKDPHYNVI-FRDEVPSFIYETLNIPA 46 (59)
Q Consensus 3 pileyi---rclndpnryrlsakdphynvi-frdevpsfiyetlnipa 46 (59)
.+++|+ ...-+|....+-.-+|.+|.- .|+..-.+++|++|+|+
T Consensus 107 ~i~~~~~~~~l~~~p~e~pilltEp~~~~~~~Rek~~EilFE~f~vpa 154 (219)
T 3dwl_A 107 RFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAG 154 (219)
T ss_dssp HHHHHHHHTTSCCCGGGCEEEEEECTTCCHHHHHHHHHHHTTTTCCSE
T ss_pred HHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCE
T ss_conf 999987445407684447245523766789999999999874168974
No 6
>>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} (A:)
Probab=7.48 E-value=1.9e+02 Score=12.77 Aligned_cols=17 Identities=24% Similarity=0.225 Sum_probs=14.7
Q ss_pred EEECCCCCEEEEEECCC
Q ss_conf 73025875037871114
Q gi|254781125|r 18 RLSAKDPHYNVIFRDEV 34 (59)
Q Consensus 18 rlsakdphynvifrdev 34 (59)
+|.+-|.|.|++..|-+
T Consensus 54 ~L~~~D~~~NlvL~d~~ 70 (121)
T 2fwk_A 54 VLRGFDEYVNMVLDDVQ 70 (121)
T ss_dssp EEEEECTTCCEEEESCC
T ss_pred EEEEECCCCCEEEEEEE
T ss_conf 99998799983991169
No 7
>>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM); HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A* (A:63-455)
Probab=7.47 E-value=31 Score=17.08 Aligned_cols=21 Identities=43% Similarity=0.744 Sum_probs=14.7
Q ss_pred EEECCCCCEEEEEECCCH--HHH
Q ss_conf 730258750378711143--778
Q gi|254781125|r 18 RLSAKDPHYNVIFRDEVP--SFI 38 (59)
Q Consensus 18 rlsakdphynvifrdevp--sfi 38 (59)
..--.||.||++|||--+ ||+
T Consensus 117 d~~lnD~~YgILfRdINm~Rtfv 139 (393)
T 3kp1_A 117 NGAHQDPQYNVLYRNINMIRSFI 139 (393)
T ss_dssp CEEECCHHHHHHHHCBCHHHHHH
T ss_pred HHHHCCHHHCCEECCCCHHHHHH
T ss_conf 22220222330103664244588
No 8
>>3kwr_A Putative RNA-binding protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: GOL; 1.45A {Lactobacillus plantarum} (A:)
Probab=6.92 E-value=1.9e+02 Score=12.75 Aligned_cols=13 Identities=46% Similarity=0.751 Sum_probs=8.8
Q ss_pred CCCEEEEEECCCH
Q ss_conf 8750378711143
Q gi|254781125|r 23 DPHYNVIFRDEVP 35 (59)
Q Consensus 23 dphynvifrdevp 35 (59)
.-.|-.|||||-.
T Consensus 8 evkypaifrdegt 20 (97)
T 3kwr_A 8 EVKYPAIFRDEGT 20 (97)
T ss_dssp CCEEEEEEEECSS
T ss_pred EEECCEEEECCCC
T ss_conf 8754417814871
No 9
>>3dkx_A Replication protein REPB; replication initiation, plasmid replication, nuclease, hexamer, flexible nuclease domains, DNA replication; 2.70A {Streptococcus agalactiae} PDB: 3dky_A (A:1-130)
Probab=6.68 E-value=2.1e+02 Score=12.54 Aligned_cols=16 Identities=31% Similarity=0.669 Sum_probs=11.8
Q ss_pred ECCCCCEEEEEECCCH
Q ss_conf 0258750378711143
Q gi|254781125|r 20 SAKDPHYNVIFRDEVP 35 (59)
Q Consensus 20 sakdphynvifrdevp 35 (59)
.-|.|||.|+++-+-|
T Consensus 50 ~~KKpH~Hvil~f~~~ 65 (130)
T 3dkx_A 50 KYKKAHYHVLYIAKNP 65 (130)
T ss_dssp SBCCCBEEEEEEEEEE
T ss_pred CCCCCEEEEEEEECCC
T ss_conf 8268727999993797
No 10
>>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} (B:373-458)
Probab=6.63 E-value=2.1e+02 Score=12.53 Aligned_cols=11 Identities=27% Similarity=0.603 Sum_probs=8.7
Q ss_pred HHHHHHHHHHH
Q ss_conf 34688888751
Q gi|254781125|r 48 KRKMAVIRSYM 58 (59)
Q Consensus 48 krkmavirsym 58 (59)
-+||+..|+||
T Consensus 34 L~kL~amR~ym 44 (86)
T 1q16_B 34 LKRMLAMRHYK 44 (86)
T ss_dssp HHHHHHHHHHH
T ss_pred EHHHHHHHHHH
T ss_conf 35278889986
Done!