RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781125|ref|YP_003065538.1| hypothetical protein
CLIBASIA_05135 [Candidatus Liberibacter asiaticus str. psy62]
         (59 letters)



>gnl|CDD|37837 KOG2626, KOG2626, KOG2626, Histone H3 (Lys4) methyltransferase
           complex, subunit CPS60/ASH2/BRE2 [Chromatin structure
           and dynamics, Transcription].
          Length = 544

 Score = 26.2 bits (57), Expect = 2.2
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 11  LNDPNRYRLSAKDPH--YNVIFRDEVPSFIYETLNIPAD 47
             D  RY L+  DP    ++ F   +P F+Y  L  P D
Sbjct: 253 SKDGYRYILAEPDPSAPEDIKFAKPIPGFLYRALLSPMD 291


>gnl|CDD|176949 CHL00004, psbD, photosystem II protein D2.
          Length = 353

 Score = 24.8 bits (54), Expect = 4.8
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)

Query: 11  LNDPNRYRLSAKD-PHYNVIFRDEV 34
           LN+  R  ++A+D PH N+IF +EV
Sbjct: 322 LNEGIRAWMAAQDQPHENLIFPEEV 346


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.326    0.141    0.426 

Gapped
Lambda     K      H
   0.267   0.0737    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 782,271
Number of extensions: 31026
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 4
Length of query: 59
Length of database: 6,263,737
Length adjustment: 31
Effective length of query: 28
Effective length of database: 5,593,858
Effective search space: 156628024
Effective search space used: 156628024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.4 bits)