RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781125|ref|YP_003065538.1| hypothetical protein
CLIBASIA_05135 [Candidatus Liberibacter asiaticus str. psy62]
         (59 letters)



>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT.  This
          family consists of several bacterial cobalamin
          biosynthesis (CobT) proteins. CobT is involved in the
          transformation of precorrin-3 into cobyrinic acid.
          Length = 282

 Score = 27.9 bits (62), Expect = 0.67
 Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 5/43 (11%)

Query: 18 RLSAKDPHYNVIFRDEVPSFIYETLNIP-----ADKRKMAVIR 55
          R  A D    V F  + P        +P     A K   A++R
Sbjct: 21 RAIAGDKELEVAFAGDRPGLAGNRARLPELPKDASKTDAAIVR 63


>gnl|CDD|178745 PLN03206, PLN03206, phosphoribosylformylglycinamidine synthase;
            Provisional.
          Length = 1307

 Score = 26.3 bits (58), Expect = 2.0
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%)

Query: 20   SAKDPHYNVIFRDEVPSFIYETLNIPADKRKMAVIR 55
            S K P + + F    P+F  + +     K K+A+IR
Sbjct: 1012 SRKAPTWKLSF---TPAFTDKKIMNATSKPKVAIIR 1044


>gnl|CDD|185621 PTZ00442, PTZ00442, sexual stage antigen s48/45-like protein;
           Provisional.
          Length = 347

 Score = 25.6 bits (56), Expect = 2.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 25  HYNVIFRDEVPSFIYETLN 43
           HYN  F   VPS IY+ + 
Sbjct: 264 HYNKTFYARVPSRIYQNMK 282


>gnl|CDD|184009 PRK13370, mhpB, 3-(2,3-dihydroxyphenyl)propionate dioxygenase;
          Provisional.
          Length = 313

 Score = 24.9 bits (55), Expect = 4.9
 Identities = 7/13 (53%), Positives = 8/13 (61%)

Query: 25 HYNVIFRDEVPSF 37
          HYN  F D +P F
Sbjct: 53 HYNGFFYDVMPPF 65


>gnl|CDD|149197 pfam07982, Herpes_UL74, Herpes UL74 glycoproteins.  Members of this
           family are viral glycoproteins that form part of an
           envelope complex.
          Length = 457

 Score = 24.2 bits (52), Expect = 8.3
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 10  CLNDPNRYRLSAKDPHYNVIFRDEVPSFIYETLNI 44
           C  D NR  +S    + +V+ R+E P  IY TL++
Sbjct: 344 CKPDRNRTAVSEFMKNTHVLIRNETPYTIYGTLDM 378


>gnl|CDD|184796 PRK14701, PRK14701, reverse gyrase; Provisional.
          Length = 1638

 Score = 24.1 bits (52), Expect = 9.5
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 16  RYRLSAKDPHYNVIFRDEVPSFIYETLNI 44
           R     K   ++ IF D+V +F+  + NI
Sbjct: 191 RNFPEMKHLKFDFIFVDDVDAFLKASKNI 219


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.326    0.141    0.426 

Gapped
Lambda     K      H
   0.267   0.0691    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,004,008
Number of extensions: 46194
Number of successful extensions: 118
Number of sequences better than 10.0: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 11
Length of query: 59
Length of database: 5,994,473
Length adjustment: 31
Effective length of query: 28
Effective length of database: 5,324,625
Effective search space: 149089500
Effective search space used: 149089500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.1 bits)