RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781125|ref|YP_003065538.1| hypothetical protein
CLIBASIA_05135 [Candidatus Liberibacter asiaticus str. psy62]
         (59 letters)



>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
           II, ligase; 3.23A {Methanococcus maripaludis S2}
          Length = 701

 Score = 24.6 bits (53), Expect = 5.6
 Identities = 3/16 (18%), Positives = 8/16 (50%)

Query: 38  IYETLNIPADKRKMAV 53
           I +T +    K+ + +
Sbjct: 412 IEKTFSFGKTKKNVKI 427


>2vx5_A Cellvibrio japonicus mannanase cjman26C; hydrolase; HET: BMA; 1.47A
           {Cellvibrio japonicus} PDB: 2vx4_A* 2vx6_A* 2vx7_A*
          Length = 396

 Score = 23.9 bits (51), Expect = 10.0
 Identities = 6/29 (20%), Positives = 12/29 (41%), Gaps = 3/29 (10%)

Query: 12  NDPNRYRLSAKDPHYNVIFRDEVPSFIYE 40
              + ++   +     V+F DE+P   Y 
Sbjct: 371 ATADDFKRFYQSE--VVLFEDELPPL-YR 396


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.326    0.141    0.426 

Gapped
Lambda     K      H
   0.267   0.0531    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 537,537
Number of extensions: 19333
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 6
Length of query: 59
Length of database: 5,693,230
Length adjustment: 30
Effective length of query: 29
Effective length of database: 4,965,910
Effective search space: 144011390
Effective search space used: 144011390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.5 bits)