Query gi|254781126|ref|YP_003065539.1| hypothetical protein CLIBASIA_05140 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 85
No_of_seqs 2 out of 4
Neff 1.2
Searched_HMMs 23785
Date Wed Jun 1 01:46:06 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781126.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2guk_A Hypothetical protein PG 28.7 25 0.0011 15.8 2.1 40 1-47 65-105 (120)
2 3ljm_A Coil Ser L9C; de novo d 8.2 1.1E+02 0.0045 12.3 1.1 10 67-76 13-22 (31)
3 3dzy_D Peroxisome proliferator 7.6 65 0.0027 13.5 -0.2 11 7-17 325-335 (419)
4 2e2z_A TIM15; protein import, 6.6 1.2E+02 0.005 12.0 0.8 25 39-64 49-73 (100)
5 5csm_A Chorismate mutase; chor 6.4 1.3E+02 0.0055 11.8 2.2 17 5-21 145-161 (256)
6 2zfn_A RTT109, regulator of TY 5.8 1.4E+02 0.006 11.5 1.2 42 22-71 306-347 (460)
7 1jgn_B PAIP2, polyadenylate-bi 5.1 1.1E+02 0.0046 12.2 -0.2 11 40-50 2-12 (26)
8 1d0d_A TAP, anticoagulant prot 4.3 16 0.00066 17.0 -5.0 16 27-42 19-34 (60)
9 2vxz_A Pyrsv_GP04; viral prote 3.8 2E+02 0.0084 10.7 1.9 26 5-30 66-91 (165)
10 3hbk_A Putative glycosyl hydro 3.6 1.5E+02 0.0062 11.5 -0.4 23 10-32 6-28 (245)
No 1
>2guk_A Hypothetical protein PG1857; alpha-beta, alpha-helical bundle, structural genomics, PSI, protein structure initiative; 1.91A {Porphyromonas gingivalis W83} SCOP: d.360.1.1
Probab=28.72 E-value=25 Score=15.82 Aligned_cols=40 Identities=25% Similarity=0.530 Sum_probs=28.4
Q ss_pred CCEEHHHHHHHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9420114899999999-9977665248367899998787677516867
Q gi|254781126|r 1 MNIFVRDISCLRALVF-VITRGVARLPKDQKKAFFRHEKKVADHLNYN 47 (85)
Q Consensus 1 mnifvrdisclralvf-vITR~~~~L~~~~KKAFF~HEKKV~~~LNYN 47 (85)
.|+|--+-.|+.++-- |.+|-|+.|+..|. | -...-|.|+
T Consensus 65 iNlFFG~~~Ci~~ir~~v~~rpL~~lTpEED--F-----iLG~mLGYD 105 (120)
T 2guk_A 65 TNLFFGCKECMEAIRLFVSGRSLNSLTPEED--F-----IIGAMLGYD 105 (120)
T ss_dssp EEEEEECHHHHHHHHHHHTTSCGGGCCHHHH--H-----HHHHHTTCC
T ss_pred EEEEECCHHHHHHHHHHHCCCCHHHCCHHHH--H-----HHHHHHCCC
T ss_conf 7988698899999999836896232790998--9-----999886554
No 2
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 1coi_A
Probab=8.19 E-value=1.1e+02 Score=12.29 Aligned_cols=10 Identities=70% Similarity=0.687 Sum_probs=6.7
Q ss_pred HHHHHHHHHH
Q ss_conf 3778987423
Q gi|254781126|r 67 KESKLQKLSK 76 (85)
Q Consensus 67 kesklqklsk 76 (85)
-|||+|.|.|
T Consensus 13 lesk~qalek 22 (31)
T 3ljm_A 13 LESKLQALEK 22 (31)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 3
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=7.63 E-value=65 Score=13.50 Aligned_cols=11 Identities=18% Similarity=0.522 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q ss_conf 48999999999
Q gi|254781126|r 7 DISCLRALVFV 17 (85)
Q Consensus 7 disclralvfv 17 (85)
++.||.|+++.
T Consensus 325 E~~lLkaivl~ 335 (419)
T 3dzy_D 325 DLAIFIAVIIL 335 (419)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHHH
T ss_conf 99999999971
No 4
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=6.63 E-value=1.2e+02 Score=12.00 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=20.6
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 67751686732012218999986320
Q gi|254781126|r 39 KVADHLNYNAGDRKSNIDKLYKARCK 64 (85)
Q Consensus 39 KV~~~LNYNA~DRK~NI~~~Y~AR~K 64 (85)
.++|||+.- +|.+-||..+..++|.
T Consensus 49 lIaDnLg~F-~d~~~~iEdil~~kGe 73 (100)
T 2e2z_A 49 LIADHLKIF-HDHHVTVEQLMKANGE 73 (100)
T ss_dssp ESCCSSCSG-GGSCCCHHHHHHHHCC
T ss_pred EEHHCCCEE-CCCCCCHHHHHHHHCC
T ss_conf 441103602-6799799999997097
No 5
>5csm_A Chorismate mutase; chorismate pyruvatemutase, allosteric protein, complex (isomerase/peptide), transition state analog; HET: TRP; 2.00A {Saccharomyces cerevisiae} SCOP: a.130.1.2 PDB: 3csm_A* 2csm_A* 4csm_A* 1csm_A*
Probab=6.44 E-value=1.3e+02 Score=11.77 Aligned_cols=17 Identities=47% Similarity=0.718 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 11489999999999776
Q gi|254781126|r 5 VRDISCLRALVFVITRG 21 (85)
Q Consensus 5 vrdisclralvfvITR~ 21 (85)
+.||.||.||---|.-|
T Consensus 145 ~cDi~cLQALSRRIHyG 161 (256)
T 5csm_A 145 TRDIECLQSLSRRIHFG 161 (256)
T ss_dssp HHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999998885532
No 6
>2zfn_A RTT109, regulator of TY1 transposition protein 109; histone H3 lysine 56 acetylation, DNA damage, DNA repair, nucleus, transcription; HET: ALY ACO; 1.90A {Saccharomyces cerevisiae} PDB: 2rim_A 3d35_A* 3cz7_A*
Probab=5.78 E-value=1.4e+02 Score=11.55 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=28.6
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 65248367899998787677516867320122189999863201337789
Q gi|254781126|r 22 VARLPKDQKKAFFRHEKKVADHLNYNAGDRKSNIDKLYKARCKYRKESKL 71 (85)
Q Consensus 22 ~~~L~~~~KKAFF~HEKKV~~~LNYNA~DRK~NI~~~Y~AR~KYRkeskl 71 (85)
+-+.|.|-|--|.++-. -..++++-.++||++- -.||.|-.|
T Consensus 306 IP~FPDDPK~RFL~eL~-------~E~~~~~vsl~~FWe~-m~~RQEFrL 347 (460)
T 2zfn_A 306 IPLFPDDPKARFIHQLA-------EEDRLLKVSLSSFWIE-LQERQEFKL 347 (460)
T ss_dssp CBCCTTCHHHHHHHHHH-------HTTCTTTCBHHHHHHH-HHHHTGGGG
T ss_pred CCCCCCCCHHHHHHHHH-------HHCCCCCCCHHHHHHH-HHHHHHHCC
T ss_conf 78899896066899998-------6432147789999999-888753234
No 7
>1jgn_B PAIP2, polyadenylate-binding protein-interacting protein 2; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens}
Probab=5.09 E-value=1.1e+02 Score=12.23 Aligned_cols=11 Identities=45% Similarity=0.522 Sum_probs=7.8
Q ss_pred HHHHCCCCCCH
Q ss_conf 77516867320
Q gi|254781126|r 40 VADHLNYNAGD 50 (85)
Q Consensus 40 V~~~LNYNA~D 50 (85)
|.||||-||..
T Consensus 2 vksnlnpnake 12 (26)
T 1jgn_B 2 VKSNLNPNAKE 12 (26)
T ss_dssp CCCSSCTTCCC
T ss_pred CCCCCCCCHHH
T ss_conf 33668988535
No 8
>1d0d_A TAP, anticoagulant protein; factor XA inhibitor, kunitz inhibitor, blood clotting inhibitor; 1.62A {Ornithodoros moubata} SCOP: g.8.1.2 PDB: 1kig_I 1tap_A 1tcp_A
Probab=4.26 E-value=16 Score=16.98 Aligned_cols=16 Identities=31% Similarity=0.580 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 3678999987876775
Q gi|254781126|r 27 KDQKKAFFRHEKKVAD 42 (85)
Q Consensus 27 ~~~KKAFF~HEKKV~~ 42 (85)
|+..++||+|.|+--+
T Consensus 19 e~~~~~~f~~~k~~c~ 34 (60)
T 1d0d_A 19 EGGERAYFRNGKGGCD 34 (60)
T ss_dssp GTCEEEEEECSSSSEE
T ss_pred CCCEEEECCCCCCCCC
T ss_conf 7843776148998877
No 9
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=3.81 E-value=2e+02 Score=10.72 Aligned_cols=26 Identities=31% Similarity=0.298 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 11489999999999776652483678
Q gi|254781126|r 5 VRDISCLRALVFVITRGVARLPKDQK 30 (85)
Q Consensus 5 vrdisclralvfvITR~~~~L~~~~K 30 (85)
.-|-.-.+.+||-|-|++-||-++-+
T Consensus 66 Cl~~d~y~nlV~~i~Rei~RlV~~~~ 91 (165)
T 2vxz_A 66 CLSMDQYRQLVDGMIREVERLVTTNK 91 (165)
T ss_dssp ESCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EECHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 95637999999999999999997146
No 10
>3hbk_A Putative glycosyl hydrolase; YP_001302580.1, WAS domain of unknown function (DUF1080), structural genomics; HET: MSE; 2.36A {Parabacteroides distasonis atcc 8503}
Probab=3.64 E-value=1.5e+02 Score=11.46 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 99999999977665248367899
Q gi|254781126|r 10 CLRALVFVITRGVARLPKDQKKA 32 (85)
Q Consensus 10 clralvfvITR~~~~L~~~~KKA 32 (85)
|+-.+++++|-.+|+++..|++.
T Consensus 6 ~~~~~~~~~~~~~n~~~~~e~~~ 28 (245)
T 3hbk_A 6 AKVVPMAVITPAINQLTDQEKAE 28 (245)
T ss_dssp ---------CCCTTSCCSHHHHT
T ss_pred HHHHHHHHHHCCCCCCCHHHHHC
T ss_conf 31023454420146588538657
Done!