Query gi|254781126|ref|YP_003065539.1| hypothetical protein CLIBASIA_05140 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 85
No_of_seqs 2 out of 4
Neff 1.2
Searched_HMMs 13730
Date Wed Jun 1 11:26:20 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781126.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2guka1 d.360.1.1 (A:4-114) Hy 18.5 24 0.0018 14.6 1.6 30 1-30 59-89 (111)
2 d2ifxa1 d.58.4.19 (A:1-108) Hy 12.9 42 0.003 13.2 1.8 18 27-44 81-98 (108)
3 d5csma_ a.130.1.2 (A:) Alloste 6.8 73 0.0053 11.9 2.2 17 5-21 145-161 (256)
4 d1n8va_ a.118.21.1 (A:) Chemos 5.2 91 0.0066 11.3 2.6 52 13-68 44-95 (101)
5 d1g40a1 g.18.1.1 (A:1-64) Comp 5.0 90 0.0065 11.3 0.5 12 41-52 20-31 (64)
6 d1xhca3 d.87.1.1 (A:290-351) N 5.0 6.4 0.00046 17.8 -5.4 18 24-41 31-48 (62)
7 d2hbaa1 d.100.1.1 (A:1-52) Rib 4.8 82 0.006 11.6 0.2 28 12-39 25-52 (52)
8 d1iwpg_ a.23.2.1 (G:) Diol deh 4.6 83 0.006 11.5 0.1 55 15-69 69-138 (138)
9 d1lnla1 a.86.1.1 (A:-3-304) Mo 4.3 1E+02 0.0073 11.1 0.3 26 17-42 5-30 (307)
10 d1d0da_ g.8.1.2 (A:) Anticoagu 4.3 9 0.00066 17.0 -5.0 16 27-42 19-34 (60)
No 1
>d2guka1 d.360.1.1 (A:4-114) Hypothetical protein PG1857 {Porphyromonas gingivalis [TaxId: 837]}
Probab=18.50 E-value=24 Score=14.58 Aligned_cols=30 Identities=27% Similarity=0.525 Sum_probs=23.6
Q ss_pred CCEEHHHHHHHHHHH-HHHHHHHHHCCHHHH
Q ss_conf 942011489999999-999776652483678
Q gi|254781126|r 1 MNIFVRDISCLRALV-FVITRGVARLPKDQK 30 (85)
Q Consensus 1 mnifvrdisclralv-fvITR~~~~L~~~~K 30 (85)
.|+|--.-.|..++- ||.+|-++.|+..|.
T Consensus 59 vNlFFG~~~ci~~ir~~~~~rpL~~lt~EED 89 (111)
T d2guka1 59 TNLFFGCKECMEAIRLFVSGRSLNSLTPEED 89 (111)
T ss_dssp EEEEEECHHHHHHHHHHHTTSCGGGCCHHHH
T ss_pred EEEEECCHHHHHHHHHHHCCCCHHHCCHHHH
T ss_conf 7887587799999999974896232783988
No 2
>d2ifxa1 d.58.4.19 (A:1-108) Hypothetical protein Reut_A1503 {Ralstonia eutropha [TaxId: 106590]}
Probab=12.88 E-value=42 Score=13.24 Aligned_cols=18 Identities=39% Similarity=0.654 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHC
Q ss_conf 367899998787677516
Q gi|254781126|r 27 KDQKKAFFRHEKKVADHL 44 (85)
Q Consensus 27 ~~~KKAFF~HEKKV~~~L 44 (85)
.|-.||+|||.|-....|
T Consensus 81 sdirkawfehgk~figql 98 (108)
T d2ifxa1 81 SDIRKAWFEHGKTFIGQL 98 (108)
T ss_dssp CHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHCCEEEEEC
T ss_conf 889999997260622202
No 3
>d5csma_ a.130.1.2 (A:) Allosteric chorismate mutase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.79 E-value=73 Score=11.87 Aligned_cols=17 Identities=47% Similarity=0.718 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 11489999999999776
Q gi|254781126|r 5 VRDISCLRALVFVITRG 21 (85)
Q Consensus 5 vrdisclralvfvITR~ 21 (85)
+.||.||.||---|.-|
T Consensus 145 ~cDi~cLQALSRRIHyG 161 (256)
T d5csma_ 145 TRDIECLQSLSRRIHFG 161 (256)
T ss_dssp HHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999886654
No 4
>d1n8va_ a.118.21.1 (A:) Chemosensory protein Csp2 {Cabbage moth (Mamestra brassicae) [TaxId: 55057]}
Probab=5.17 E-value=91 Score=11.32 Aligned_cols=52 Identities=23% Similarity=0.298 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999977665248367899998787677516867320122189999863201337
Q gi|254781126|r 13 ALVFVITRGVARLPKDQKKAFFRHEKKVADHLNYNAGDRKSNIDKLYKARCKYRKE 68 (85)
Q Consensus 13 alvfvITR~~~~L~~~~KKAFF~HEKKV~~~LNYNA~DRK~NI~~~Y~AR~KYRke 68 (85)
.|--+|..+-+.-++.||..+ +||..+|.-|-.+--.-+-+-|..-|+||+-
T Consensus 44 ~lPeal~t~C~kCT~kQK~~~----~kvi~~l~~~~p~~w~~l~~KYDP~g~y~~k 95 (101)
T d1n8va_ 44 HLQDAIENGCKKCTENQEKGA----YRVIEHLIKNEIEIWRELTAKYDPTGNWRKK 95 (101)
T ss_dssp HHHHHHHHTTTTCCHHHHHHH----HHHHHHHHHHCHHHHHHHHHHHCTTCSSHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHH----HHHHHHHHHCCCHHHHHHHHHHCCCCHHHHH
T ss_conf 849998714668999999999----9999999990909999999987969569999
No 5
>d1g40a1 g.18.1.1 (A:1-64) Complement control protein {Vaccinia virus [TaxId: 10245]}
Probab=4.98 E-value=90 Score=11.35 Aligned_cols=12 Identities=42% Similarity=0.639 Sum_probs=8.8
Q ss_pred HHHCCCCCCHHH
Q ss_conf 751686732012
Q gi|254781126|r 41 ADHLNYNAGDRK 52 (85)
Q Consensus 41 ~~~LNYNA~DRK 52 (85)
..|-|||.||.-
T Consensus 20 dananynigdti 31 (64)
T d1g40a1 20 DANANYNIGDTI 31 (64)
T ss_dssp CSSCCSSSCCEE
T ss_pred CCCCCCCCCCCE
T ss_conf 566665646505
No 6
>d1xhca3 d.87.1.1 (A:290-351) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}
Probab=4.96 E-value=6.4 Score=17.84 Aligned_cols=18 Identities=22% Similarity=0.501 Sum_probs=11.9
Q ss_pred HCCHHHHHHHHHHHHHHH
Q ss_conf 248367899998787677
Q gi|254781126|r 24 RLPKDQKKAFFRHEKKVA 41 (85)
Q Consensus 24 ~L~~~~KKAFF~HEKKV~ 41 (85)
+--..+-|+|+++||-|.
T Consensus 31 ~Wid~~tK~Fy~d~KiiG 48 (62)
T d1xhca3 31 KWIEDNTKVFYENGKIIG 48 (62)
T ss_dssp EEEETTEEEEC-----CE
T ss_pred EEECCCCEEEEECCCEEE
T ss_conf 120211326666795889
No 7
>d2hbaa1 d.100.1.1 (A:1-52) Ribosomal protein L9 N-domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=4.75 E-value=82 Score=11.57 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 9999999776652483678999987876
Q gi|254781126|r 12 RALVFVITRGVARLPKDQKKAFFRHEKK 39 (85)
Q Consensus 12 ralvfvITR~~~~L~~~~KKAFF~HEKK 39 (85)
-|--|.|.+++|..+..+..+.++.+++
T Consensus 25 yarN~LiP~g~A~~at~~n~~~~~~~k~ 52 (52)
T d2hbaa1 25 YANNFLFKQGLAIEATPANLKALEAQKQ 52 (52)
T ss_dssp HHHHTTTTTTSEEECCHHHHHHHHHHHC
T ss_pred CHHHHHCCCCCHHHCCHHHHHHHHHHHC
T ss_conf 0567606678625479999999998519
No 8
>d1iwpg_ a.23.2.1 (G:) Diol dehydratase, gamma subunit {Klebsiella pneumoniae [TaxId: 573]}
Probab=4.62 E-value=83 Score=11.54 Aligned_cols=55 Identities=24% Similarity=0.358 Sum_probs=23.5
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHH----------HHHHHHC--CCCCCHHH---HHHHHHHHHHHHHHHHH
Q ss_conf 99997766524836789999878----------7677516--86732012---21899998632013377
Q gi|254781126|r 15 VFVITRGVARLPKDQKKAFFRHE----------KKVADHL--NYNAGDRK---SNIDKLYKARCKYRKES 69 (85)
Q Consensus 15 vfvITR~~~~L~~~~KKAFF~HE----------KKV~~~L--NYNA~DRK---~NI~~~Y~AR~KYRkes 69 (85)
-|--.-|+...|.+.--+.++-- -.+++.| .|+|---- ..--.+|+.|++.||.|
T Consensus 69 Nf~RAAELt~vPD~rvLeiYnaLRP~RStk~ELl~iA~eL~~~Y~A~~cA~~vrEAAe~Ye~R~~Lkk~~ 138 (138)
T d1iwpg_ 69 NFRRAAELIAIPDERILAIYNALRPFRSSQAELLAIADELEHTWHATVNAAFVRESAEVYQQRHKLRKGS 138 (138)
T ss_dssp HHHHHHTTTTSCHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHTTCSCSCC
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 8999886106986999999997288834099999999999998597989999999999999853230489
No 9
>d1lnla1 a.86.1.1 (A:-3-304) Mollusc hemocyanin {Mollusca (Rapana thomasiana) [TaxId: 29165]}
Probab=4.27 E-value=1e+02 Score=11.10 Aligned_cols=26 Identities=12% Similarity=0.322 Sum_probs=19.2
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 99776652483678999987876775
Q gi|254781126|r 17 VITRGVARLPKDQKKAFFRHEKKVAD 42 (85)
Q Consensus 17 vITR~~~~L~~~~KKAFF~HEKKV~~ 42 (85)
+|-|+...|+..|+++|.+--++...
T Consensus 5 ~VRke~~~Ls~~Er~~fi~Al~~l~~ 30 (307)
T d1lnla1 5 LVRKSVRNLSPAERASLVAALKSLQE 30 (307)
T ss_dssp EEECBGGGCCHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHCCHHHHHHHHHHHHHHHH
T ss_conf 52098177999999999999999986
No 10
>d1d0da_ g.8.1.2 (A:) Anticoagulant protein, factor Xa inhibitor {Soft tick (Ornithodoros moubata) [TaxId: 6938]}
Probab=4.26 E-value=9 Score=16.98 Aligned_cols=16 Identities=31% Similarity=0.580 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 3678999987876775
Q gi|254781126|r 27 KDQKKAFFRHEKKVAD 42 (85)
Q Consensus 27 ~~~KKAFF~HEKKV~~ 42 (85)
|+..++||+|.|+--+
T Consensus 19 e~~~~~~f~~~k~~c~ 34 (60)
T d1d0da_ 19 EGGERAYFRNGKGGCD 34 (60)
T ss_dssp GTCEEEEEECSSSSEE
T ss_pred CCCEEEECCCCCCCCC
T ss_conf 7843776148998877
Done!