RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781126|ref|YP_003065539.1| hypothetical protein
CLIBASIA_05140 [Candidatus Liberibacter asiaticus str. psy62]
         (85 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.4 bits (63), Expect = 0.45
 Identities = 8/50 (16%), Positives = 16/50 (32%), Gaps = 26/50 (52%)

Query: 13  ALV-----FVIT-------------RGV--------ARLPKDQKKAFFRH 36
           +LV      V++             R          +R+P  ++K  F +
Sbjct: 369 SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSN 418


>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding,
           HOST-virus interaction, metal-binding, nucleus,
           polymorphism, receptor, transcription, transcription
           regulation; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
           3dzu_D* 3e00_D* 2env_A
          Length = 419

 Score = 26.1 bits (56), Expect = 1.8
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 31  KAFFRHEKKVADHLNYNAGDRKSNIDKLYKARCKY 65
           K FFR  + +   L Y+  D    I K  + +C+Y
Sbjct: 74  KGFFR--RTIRLKLIYDRCDLNCRIHKKSRNKCQY 106


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.325    0.136    0.389 

Gapped
Lambda     K      H
   0.267   0.0627    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 658,874
Number of extensions: 24636
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 4
Length of query: 85
Length of database: 5,693,230
Length adjustment: 53
Effective length of query: 32
Effective length of database: 4,408,298
Effective search space: 141065536
Effective search space used: 141065536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.3 bits)