Query gi|254781127|ref|YP_003065540.1| hypothetical protein CLIBASIA_05145 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 48
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 11:25:30 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781127.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1n1jb_ a.22.1.3 (B:) Nuclear 12.1 19 0.0014 16.2 -0.3 15 23-37 61-75 (78)
2 d1o3ua_ a.24.16.3 (A:) Hypothe 6.0 98 0.0071 12.5 2.1 14 15-28 28-41 (126)
3 d1xu0a_ d.6.1.1 (A:) Prion pro 5.5 49 0.0035 14.1 -0.6 20 2-21 51-70 (102)
4 d1ufba_ a.24.16.3 (A:) Hypothe 5.3 1.1E+02 0.0079 12.3 2.1 15 15-29 32-46 (127)
5 d2ejna1 a.101.1.1 (A:1-72) All 5.2 1.1E+02 0.0081 12.3 1.7 24 10-33 34-57 (72)
6 d3efza1 a.118.7.1 (A:46-268) 1 4.4 1.3E+02 0.0093 12.0 2.8 26 7-32 158-183 (223)
7 d2byka1 a.22.1.3 (A:29-100) Ch 3.7 1.2E+02 0.009 12.0 0.5 16 22-37 52-67 (72)
8 d2o8pa1 a.118.7.1 (A:8-227) 14 3.6 1.5E+02 0.011 11.6 2.4 25 7-31 172-199 (220)
9 d2o02a1 a.118.7.1 (A:1-230) ze 3.3 1.6E+02 0.012 11.4 2.3 24 8-31 176-199 (230)
10 d1u3ma_ d.6.1.1 (A:) Prion pro 3.1 1.7E+02 0.012 11.3 1.4 15 3-17 56-70 (117)
No 1
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.08 E-value=19 Score=16.24 Aligned_cols=15 Identities=47% Similarity=0.782 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999987876987666
Q gi|254781127|r 23 KALRAFDEFHFLRDK 37 (48)
Q Consensus 23 kalrafdefhflrdk 37 (48)
.|++..++|.||+|-
T Consensus 61 ~av~~~~~~~FL~d~ 75 (78)
T d1n1jb_ 61 MAITKFDQFDFLIDI 75 (78)
T ss_dssp HHHTTCGGGGGGTTT
T ss_pred HHHHCCCHHHHHHHH
T ss_conf 999648766788872
No 2
>d1o3ua_ a.24.16.3 (A:) Hypothetical protein TM0613 {Thermotoga maritima [TaxId: 2336]}
Probab=6.04 E-value=98 Score=12.55 Aligned_cols=14 Identities=43% Similarity=0.444 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 66999999999987
Q gi|254781127|r 15 ENIKQATEKALRAF 28 (48)
Q Consensus 15 enikqatekalraf 28 (48)
-+..||.||+|.|+
T Consensus 28 f~~qQavEk~lKa~ 41 (126)
T d1o3ua_ 28 FSSQQAAEKAVKAV 41 (126)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999999
No 3
>d1xu0a_ d.6.1.1 (A:) Prion protein domain {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=5.46 E-value=49 Score=14.13 Aligned_cols=20 Identities=30% Similarity=0.589 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 36767778865546699999
Q gi|254781127|r 2 KSLVRDYFKIEITENIKQAT 21 (48)
Q Consensus 2 kslvrdyfkieitenikqat 21 (48)
.+.|+|-+.|.++|.+-..+
T Consensus 51 ~~FV~DCvNiTV~e~~i~~~ 70 (102)
T d1xu0a_ 51 DRFVRDCYNMSVTEYIIKPA 70 (102)
T ss_dssp HHHHHHHHHHHHHHTTTGGG
T ss_pred CCHHHHHEEEEEEEEEECCC
T ss_conf 45324303546788883456
No 4
>d1ufba_ a.24.16.3 (A:) Hypothetical protein TT1696 {Thermus thermophilus [TaxId: 274]}
Probab=5.34 E-value=1.1e+02 Score=12.31 Aligned_cols=15 Identities=33% Similarity=0.388 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 669999999999878
Q gi|254781127|r 15 ENIKQATEKALRAFD 29 (48)
Q Consensus 15 enikqatekalrafd 29 (48)
-+..||.||+|.|.-
T Consensus 32 f~~qQavEk~lKAll 46 (127)
T d1ufba_ 32 FAAQQAAEAALKGLH 46 (127)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999999
No 5
>d2ejna1 a.101.1.1 (A:1-72) Allergen Fel d I-A chain {Cat (Felis catus) [TaxId: 9685]}
Probab=5.20 E-value=1.1e+02 Score=12.26 Aligned_cols=24 Identities=13% Similarity=0.124 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 865546699999999998787698
Q gi|254781127|r 10 KIEITENIKQATEKALRAFDEFHF 33 (48)
Q Consensus 10 kieitenikqatekalrafdefhf 33 (48)
-.|-+|+|||.....|..-|.-|-
T Consensus 34 vLEnae~iK~CvDstLTeEDK~ha 57 (72)
T d2ejna1 34 VLENARILKNCVDAKMTEEDKENA 57 (72)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 998589999874012008789989
No 6
>d3efza1 a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980 {Cryptosporidium parvum [TaxId: 5807]}
Probab=4.40 E-value=1.3e+02 Score=11.95 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77886554669999999999878769
Q gi|254781127|r 7 DYFKIEITENIKQATEKALRAFDEFH 32 (48)
Q Consensus 7 dyfkieitenikqatekalrafdefh 32 (48)
-.|--||-.+...|-+-|-.|||++.
T Consensus 158 SVF~YEi~~~~~~A~~lAk~Afd~~~ 183 (223)
T d3efza1 158 TILKYDLLGNPEGAMKFANRAIQAAE 183 (223)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 99999980799999999999999998
No 7
>d2byka1 a.22.1.3 (A:29-100) Chrac-16 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=3.74 E-value=1.2e+02 Score=12.01 Aligned_cols=16 Identities=13% Similarity=0.248 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999987876987666
Q gi|254781127|r 22 EKALRAFDEFHFLRDK 37 (48)
Q Consensus 22 ekalrafdefhflrdk 37 (48)
..+....+.|.||.|-
T Consensus 52 ~~aV~~~~~f~FL~di 67 (72)
T d2byka1 52 SQVVNKNKNLEFLLQI 67 (72)
T ss_dssp HHHHHTCSTTGGGTTT
T ss_pred HHHHCCCCHHHHHHHH
T ss_conf 9998068644578875
No 8
>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}
Probab=3.63 E-value=1.5e+02 Score=11.59 Aligned_cols=25 Identities=16% Similarity=-0.008 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHH
Q ss_conf 778865546699999999998---7876
Q gi|254781127|r 7 DYFKIEITENIKQATEKALRA---FDEF 31 (48)
Q Consensus 7 dyfkieitenikqatekalra---fdef 31 (48)
-.|.-||-.+...|-+-|-.| ||+-
T Consensus 172 SVF~yEi~~~~~~A~~lAk~A~~~fdea 199 (220)
T d2o8pa1 172 AYILSEKYGEKKQVFNMLNSLGKILELQ 199 (220)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 9999999369999999999998889999
No 9
>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.29 E-value=1.6e+02 Score=11.41 Aligned_cols=24 Identities=38% Similarity=0.373 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 788655466999999999987876
Q gi|254781127|r 8 YFKIEITENIKQATEKALRAFDEF 31 (48)
Q Consensus 8 yfkieitenikqatekalrafdef 31 (48)
.|.-||-.+...|-+-|-.|||+.
T Consensus 176 VF~YEi~~~~~~A~~lak~afd~a 199 (230)
T d2o02a1 176 VFYYEILNSPEKACSLAKTAFDEA 199 (230)
T ss_dssp HHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 999998279899999999999999
No 10
>d1u3ma_ d.6.1.1 (A:) Prion protein domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=3.11 E-value=1.7e+02 Score=11.31 Aligned_cols=15 Identities=40% Similarity=0.572 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 676777886554669
Q gi|254781127|r 3 SLVRDYFKIEITENI 17 (48)
Q Consensus 3 slvrdyfkieiteni 17 (48)
..|+|.+.|.+||.+
T Consensus 56 ~FV~DCvNiTVte~~ 70 (117)
T d1u3ma_ 56 VFVADCFNITVTEYS 70 (117)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred CHHHHCEEEEEEEEE
T ss_conf 511320454678776
Done!