RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781127|ref|YP_003065540.1| hypothetical protein
CLIBASIA_05145 [Candidatus Liberibacter asiaticus str. psy62]
         (48 letters)



>gnl|CDD|165443 PHA03172, PHA03172, UL37 tegument protein; Provisional.
          Length = 951

 Score = 26.2 bits (57), Expect = 1.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 3   SLVRDYFKIEITENIKQATEKALRAFD 29
           S+V +YF  E     ++  +KAL AFD
Sbjct: 233 SMVAEYFDPETKPAYRKFPQKALAAFD 259


>gnl|CDD|179291 PRK01390, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase; Provisional.
          Length = 460

 Score = 24.4 bits (54), Expect = 6.7
 Identities = 6/14 (42%), Positives = 8/14 (57%)

Query: 19  QATEKALRAFDEFH 32
            A  KAL +FD  +
Sbjct: 344 DAAAKALSSFDRIY 357


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.325    0.139    0.391 

Gapped
Lambda     K      H
   0.267   0.0707    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 752,392
Number of extensions: 30243
Number of successful extensions: 148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 15
Length of query: 48
Length of database: 5,994,473
Length adjustment: 21
Effective length of query: 27
Effective length of database: 5,540,705
Effective search space: 149599035
Effective search space used: 149599035
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.1 bits)