RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781127|ref|YP_003065540.1| hypothetical protein CLIBASIA_05145 [Candidatus Liberibacter asiaticus str. psy62] (48 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 24.5 bits (53), Expect = 5.6 Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 27/59 (45%) Query: 2 KSLVRDYFK--IEITENIKQATEKAL-RA---------------------FDEFHFLRD 36 K L+++Y I + + AL RA F+E LRD Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE---LRD 175 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.325 0.139 0.391 Gapped Lambda K H 0.267 0.0453 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 403,389 Number of extensions: 12018 Number of successful extensions: 86 Number of sequences better than 10.0: 1 Number of HSP's gapped: 86 Number of HSP's successfully gapped: 3 Length of query: 48 Length of database: 5,693,230 Length adjustment: 21 Effective length of query: 27 Effective length of database: 5,184,106 Effective search space: 139970862 Effective search space used: 139970862 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 50 (23.7 bits)