BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781127|ref|YP_003065540.1| hypothetical protein CLIBASIA_05145 [Candidatus Liberibacter asiaticus str. psy62] (48 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781127|ref|YP_003065540.1| hypothetical protein CLIBASIA_05145 [Candidatus Liberibacter asiaticus str. psy62] Length = 48 Score = 99.0 bits (245), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 48/48 (100%), Positives = 48/48 (100%) Query: 1 MKSLVRDYFKIEITENIKQATEKALRAFDEFHFLRDKHKANVGRGEFI 48 MKSLVRDYFKIEITENIKQATEKALRAFDEFHFLRDKHKANVGRGEFI Sbjct: 1 MKSLVRDYFKIEITENIKQATEKALRAFDEFHFLRDKHKANVGRGEFI 48 >gi|254780143|ref|YP_003064556.1| DNA-directed RNA polymerase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 1386 Score = 20.8 bits (42), Expect = 4.4, Method: Composition-based stats. Identities = 8/19 (42%), Positives = 12/19 (63%) Query: 12 EITENIKQATEKALRAFDE 30 EIT +I +E+ L+ DE Sbjct: 860 EITRDIPNVSEEGLKNIDE 878 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.325 0.139 0.391 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,889 Number of Sequences: 1233 Number of extensions: 666 Number of successful extensions: 2 Number of sequences better than 100.0: 2 Number of HSP's better than 100.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2 length of query: 48 length of database: 328,796 effective HSP length: 21 effective length of query: 27 effective length of database: 302,903 effective search space: 8178381 effective search space used: 8178381 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 31 (16.5 bits)