BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781127|ref|YP_003065540.1| hypothetical protein
CLIBASIA_05145 [Candidatus Liberibacter asiaticus str. psy62]
         (48 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781127|ref|YP_003065540.1| hypothetical protein CLIBASIA_05145 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 48

 Score = 99.0 bits (245), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 48/48 (100%), Positives = 48/48 (100%)

Query: 1  MKSLVRDYFKIEITENIKQATEKALRAFDEFHFLRDKHKANVGRGEFI 48
          MKSLVRDYFKIEITENIKQATEKALRAFDEFHFLRDKHKANVGRGEFI
Sbjct: 1  MKSLVRDYFKIEITENIKQATEKALRAFDEFHFLRDKHKANVGRGEFI 48


>gi|254780143|ref|YP_003064556.1| DNA-directed RNA polymerase subunit beta [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1386

 Score = 20.8 bits (42), Expect = 4.4,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 12  EITENIKQATEKALRAFDE 30
           EIT +I   +E+ L+  DE
Sbjct: 860 EITRDIPNVSEEGLKNIDE 878


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.325    0.139    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,889
Number of Sequences: 1233
Number of extensions: 666
Number of successful extensions: 2
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 48
length of database: 328,796
effective HSP length: 21
effective length of query: 27
effective length of database: 302,903
effective search space:  8178381
effective search space used:  8178381
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 31 (16.5 bits)